Query 000737
Match_columns 1322
No_of_seqs 268 out of 411
Neff 7.1
Searched_HMMs 46136
Date Mon Apr 1 22:58:12 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000737.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000737hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2032 Uncharacterized conser 100.0 2.1E-51 4.5E-56 467.2 32.5 421 869-1294 85-532 (533)
2 KOG2171 Karyopherin (importin) 99.8 1.1E-14 2.3E-19 182.5 47.9 527 727-1296 103-716 (1075)
3 PRK09687 putative lyase; Provi 99.2 2.8E-09 6E-14 122.1 22.1 54 1223-1290 226-279 (280)
4 KOG2171 Karyopherin (importin) 99.1 1.4E-06 3E-11 111.0 47.3 636 493-1300 53-769 (1075)
5 PRK09687 putative lyase; Provi 99.1 3.5E-09 7.7E-14 121.2 19.5 224 1024-1293 25-250 (280)
6 PRK13800 putative oxidoreducta 99.0 1E-08 2.3E-13 135.5 19.8 287 924-1289 606-895 (897)
7 PRK13800 putative oxidoreducta 99.0 2.7E-08 5.8E-13 131.6 22.8 238 983-1289 622-863 (897)
8 KOG1824 TATA-binding protein-i 98.8 0.0023 5.1E-08 80.2 72.5 931 3-1175 10-1035(1233)
9 PTZ00429 beta-adaptin; Provisi 98.8 2.6E-06 5.6E-11 108.8 29.5 309 958-1292 46-396 (746)
10 KOG2032 Uncharacterized conser 98.7 3.2E-06 6.9E-11 99.1 26.0 489 427-1050 21-530 (533)
11 PF01602 Adaptin_N: Adaptin N 98.7 1.5E-06 3.2E-11 109.1 24.4 310 957-1296 19-336 (526)
12 KOG1242 Protein containing ada 98.6 3.2E-06 6.9E-11 102.2 21.8 306 981-1299 133-450 (569)
13 PF01602 Adaptin_N: Adaptin N 98.5 4.2E-06 9.1E-11 104.9 21.0 311 965-1300 62-377 (526)
14 KOG1241 Karyopherin (importin) 98.5 7.9E-05 1.7E-09 91.3 29.3 157 979-1136 361-535 (859)
15 TIGR02270 conserved hypothetic 98.5 1.1E-05 2.3E-10 97.0 21.9 206 1024-1291 88-294 (410)
16 PLN03200 cellulose synthase-in 98.4 5.6E-06 1.2E-10 113.1 20.7 269 984-1295 448-725 (2102)
17 KOG1824 TATA-binding protein-i 98.4 0.018 3.9E-07 72.6 52.6 542 730-1292 200-885 (1233)
18 KOG0211 Protein phosphatase 2A 98.3 0.00035 7.6E-09 88.9 32.0 291 989-1292 362-663 (759)
19 KOG0213 Splicing factor 3b, su 98.3 0.0085 1.8E-07 73.5 41.3 614 569-1291 399-1063(1172)
20 KOG2023 Nuclear transport rece 98.2 2.2E-05 4.8E-10 94.3 16.6 274 980-1295 172-507 (885)
21 PF10508 Proteasom_PSMB: Prote 98.2 0.00075 1.6E-08 84.2 29.4 299 987-1293 43-366 (503)
22 KOG2023 Nuclear transport rece 98.1 0.003 6.5E-08 76.7 31.5 579 645-1292 86-731 (885)
23 COG5181 HSH155 U2 snRNP splice 98.1 0.019 4.2E-07 69.2 37.1 611 569-1288 204-907 (975)
24 KOG1248 Uncharacterized conser 98.1 0.1 2.2E-06 68.2 55.7 231 1031-1296 663-901 (1176)
25 KOG1242 Protein containing ada 98.1 0.0013 2.8E-08 80.2 27.8 300 976-1287 210-558 (569)
26 KOG0915 Uncharacterized conser 98.1 0.0033 7.2E-08 82.5 31.9 319 933-1256 945-1313(1702)
27 KOG0166 Karyopherin (importin) 98.1 0.00015 3.3E-09 87.5 18.9 270 987-1297 157-440 (514)
28 KOG0166 Karyopherin (importin) 98.0 0.00012 2.7E-09 88.3 17.9 293 984-1292 68-392 (514)
29 KOG1060 Vesicle coat complex A 98.0 0.0014 3E-08 80.9 26.2 290 980-1292 69-457 (968)
30 PLN03200 cellulose synthase-in 98.0 0.0016 3.6E-08 90.0 29.6 295 957-1294 501-812 (2102)
31 PTZ00429 beta-adaptin; Provisi 98.0 0.0018 3.8E-08 83.4 27.4 278 954-1252 113-400 (746)
32 TIGR02270 conserved hypothetic 97.9 0.00049 1.1E-08 82.9 19.3 192 1022-1292 54-266 (410)
33 KOG0213 Splicing factor 3b, su 97.9 0.0039 8.5E-08 76.2 26.3 360 900-1298 607-1029(1172)
34 KOG1241 Karyopherin (importin) 97.8 0.032 7E-07 69.3 31.9 460 734-1296 27-533 (859)
35 KOG0915 Uncharacterized conser 97.8 0.0021 4.5E-08 84.3 22.8 330 957-1297 938-1310(1702)
36 PF12348 CLASP_N: CLASP N term 97.7 0.00049 1.1E-08 76.7 14.8 185 1072-1297 19-210 (228)
37 COG1413 FOG: HEAT repeat [Ener 97.7 0.00059 1.3E-08 80.7 16.2 110 1022-1163 43-153 (335)
38 COG5181 HSH155 U2 snRNP splice 97.7 0.0073 1.6E-07 72.7 23.6 343 929-1297 301-763 (975)
39 COG1413 FOG: HEAT repeat [Ener 97.6 0.0017 3.7E-08 76.7 18.4 268 981-1303 42-314 (335)
40 PF12348 CLASP_N: CLASP N term 97.6 0.00047 1E-08 76.8 12.2 190 992-1188 17-218 (228)
41 COG5215 KAP95 Karyopherin (imp 97.5 0.2 4.3E-06 60.6 32.1 281 979-1274 363-690 (858)
42 PF10508 Proteasom_PSMB: Prote 97.5 0.0088 1.9E-07 74.7 22.7 278 981-1293 118-420 (503)
43 PF13646 HEAT_2: HEAT repeats; 97.4 0.0004 8.7E-09 64.9 6.6 86 1025-1127 2-88 (88)
44 PF05004 IFRD: Interferon-rela 97.3 0.012 2.7E-07 68.7 19.7 214 1061-1296 44-260 (309)
45 KOG1062 Vesicle coat complex A 97.3 0.014 3.1E-07 72.7 20.3 289 988-1301 76-387 (866)
46 COG5240 SEC21 Vesicle coat com 97.2 0.88 1.9E-05 55.3 34.0 245 1018-1292 299-554 (898)
47 PF13646 HEAT_2: HEAT repeats; 97.2 0.0028 6.1E-08 59.2 10.1 85 1151-1289 3-88 (88)
48 PF12717 Cnd1: non-SMC mitotic 97.1 0.0056 1.2E-07 65.8 13.2 113 997-1112 3-115 (178)
49 COG5096 Vesicle coat complex, 97.1 0.042 9E-07 70.0 22.2 296 970-1292 80-385 (757)
50 PF13513 HEAT_EZ: HEAT-like re 97.1 0.0011 2.4E-08 56.6 5.6 55 1234-1291 1-55 (55)
51 PF12755 Vac14_Fab1_bd: Vacuol 97.1 0.0021 4.6E-08 61.8 8.1 87 1077-1168 3-89 (97)
52 KOG1240 Protein kinase contain 96.9 0.019 4.1E-07 74.2 17.1 150 1094-1252 570-728 (1431)
53 KOG1059 Vesicle coat complex A 96.9 0.11 2.5E-06 64.2 22.6 201 957-1174 120-363 (877)
54 PF13513 HEAT_EZ: HEAT-like re 96.8 0.002 4.4E-08 55.0 5.1 52 1036-1087 1-55 (55)
55 COG5064 SRP1 Karyopherin (impo 96.8 0.011 2.3E-07 67.0 11.9 258 1000-1294 133-444 (526)
56 KOG0211 Protein phosphatase 2A 96.8 0.016 3.5E-07 74.2 14.7 247 998-1289 214-462 (759)
57 PF12719 Cnd3: Nuclear condens 96.6 0.12 2.7E-06 60.2 19.3 131 1019-1155 23-163 (298)
58 PF12717 Cnd1: non-SMC mitotic 96.5 0.077 1.7E-06 57.0 16.0 91 1074-1176 2-92 (178)
59 PF12755 Vac14_Fab1_bd: Vacuol 96.5 0.0033 7.2E-08 60.5 4.7 86 1038-1124 2-90 (97)
60 KOG1943 Beta-tubulin folding c 96.5 0.086 1.9E-06 68.0 18.2 265 1018-1298 337-616 (1133)
61 cd00020 ARM Armadillo/beta-cat 96.5 0.0038 8.3E-08 61.3 5.3 106 1023-1130 8-119 (120)
62 KOG0212 Uncharacterized conser 96.5 0.21 4.6E-06 60.5 20.3 278 978-1296 38-324 (675)
63 cd00020 ARM Armadillo/beta-cat 96.5 0.011 2.4E-07 58.0 8.4 110 1060-1175 7-119 (120)
64 KOG4224 Armadillo repeat prote 96.4 0.099 2.1E-06 60.0 16.4 287 991-1293 176-493 (550)
65 KOG2956 CLIP-associating prote 96.4 0.067 1.5E-06 63.5 15.2 190 956-1153 299-499 (516)
66 PF04826 Arm_2: Armadillo-like 96.3 0.09 1.9E-06 59.7 15.9 165 982-1153 12-184 (254)
67 KOG1243 Protein kinase [Genera 96.3 0.021 4.6E-07 70.8 11.4 193 1057-1299 327-521 (690)
68 COG5096 Vesicle coat complex, 96.3 0.079 1.7E-06 67.6 16.2 188 958-1160 33-220 (757)
69 PF02985 HEAT: HEAT repeat; I 96.2 0.0064 1.4E-07 45.6 3.9 31 1264-1295 1-31 (31)
70 KOG0212 Uncharacterized conser 96.2 0.54 1.2E-05 57.1 21.7 245 1018-1298 163-411 (675)
71 KOG2025 Chromosome condensatio 96.2 0.093 2E-06 64.9 15.7 185 979-1173 41-256 (892)
72 PF05004 IFRD: Interferon-rela 96.2 0.32 6.9E-06 57.0 19.6 230 1026-1280 47-289 (309)
73 smart00638 LPD_N Lipoprotein N 96.1 0.23 5E-06 63.4 19.8 210 931-1171 344-573 (574)
74 KOG1062 Vesicle coat complex A 96.1 1.2 2.6E-05 56.5 24.3 352 873-1292 159-543 (866)
75 KOG0567 HEAT repeat-containing 96.0 0.3 6.5E-06 54.4 16.9 157 1062-1248 38-215 (289)
76 PF05804 KAP: Kinesin-associat 96.0 0.34 7.5E-06 62.2 20.0 306 979-1296 287-652 (708)
77 KOG1240 Protein kinase contain 95.9 0.19 4.1E-06 65.5 17.3 240 997-1296 438-688 (1431)
78 COG5215 KAP95 Karyopherin (imp 95.9 4.9 0.00011 49.3 27.5 225 928-1179 194-440 (858)
79 KOG2259 Uncharacterized conser 95.6 0.21 4.6E-06 61.5 15.3 247 982-1286 234-509 (823)
80 COG5218 YCG1 Chromosome conden 95.6 0.29 6.3E-06 59.4 16.1 209 958-1172 24-262 (885)
81 PF01347 Vitellogenin_N: Lipop 95.5 0.14 3.1E-06 65.8 14.4 166 980-1171 429-617 (618)
82 KOG1077 Vesicle coat complex A 95.3 1.9 4.2E-05 53.8 21.8 139 988-1134 80-219 (938)
83 KOG1020 Sister chromatid cohes 95.3 18 0.00039 49.4 43.0 285 957-1298 1050-1411(1692)
84 COG5240 SEC21 Vesicle coat com 95.3 2.5 5.3E-05 51.7 22.0 266 1003-1292 248-515 (898)
85 KOG2259 Uncharacterized conser 95.2 0.27 5.9E-06 60.5 14.1 104 1023-1132 199-311 (823)
86 KOG2062 26S proteasome regulat 95.1 0.74 1.6E-05 57.6 17.6 63 1228-1299 597-659 (929)
87 KOG1967 DNA repair/transcripti 95.1 0.78 1.7E-05 58.8 18.1 210 954-1172 786-1020(1030)
88 KOG4653 Uncharacterized conser 95.1 0.42 9.2E-06 60.6 15.6 203 962-1173 745-961 (982)
89 KOG4535 HEAT and armadillo rep 95.0 1.9 4E-05 51.7 19.6 208 1058-1292 388-602 (728)
90 KOG4653 Uncharacterized conser 94.8 0.96 2.1E-05 57.6 17.6 229 1025-1296 730-967 (982)
91 KOG1820 Microtubule-associated 94.7 1.1 2.4E-05 58.5 18.5 187 1068-1297 261-447 (815)
92 KOG1517 Guanine nucleotide bin 94.6 0.71 1.5E-05 59.7 15.9 259 898-1176 448-732 (1387)
93 KOG1820 Microtubule-associated 94.5 0.34 7.3E-06 63.0 13.3 198 980-1186 251-454 (815)
94 PF14225 MOR2-PAG1_C: Cell mor 94.4 3.4 7.5E-05 47.2 19.8 220 1059-1292 6-250 (262)
95 KOG4224 Armadillo repeat prote 94.2 0.22 4.8E-06 57.3 9.7 139 1031-1174 176-319 (550)
96 KOG1061 Vesicle coat complex A 94.1 8.2 0.00018 49.2 23.6 164 958-1132 27-190 (734)
97 KOG1078 Vesicle coat complex C 94.0 25 0.00054 45.1 28.2 268 1001-1292 227-531 (865)
98 KOG2956 CLIP-associating prote 93.7 1.7 3.8E-05 52.1 16.0 200 979-1188 284-490 (516)
99 PF14500 MMS19_N: Dos2-interac 93.6 1.1 2.3E-05 51.3 14.0 199 985-1189 2-217 (262)
100 KOG1943 Beta-tubulin folding c 93.5 36 0.00078 45.3 35.5 70 742-815 341-410 (1133)
101 KOG1060 Vesicle coat complex A 93.3 7.1 0.00015 49.7 20.9 169 986-1176 39-209 (968)
102 PF02985 HEAT: HEAT repeat; I 93.1 0.028 6.1E-07 42.1 0.1 28 1023-1050 1-28 (31)
103 PF04826 Arm_2: Armadillo-like 93.0 2 4.4E-05 48.9 14.8 147 983-1131 55-205 (254)
104 PF12460 MMS19_C: RNAPII trans 92.9 2.4 5.1E-05 52.0 16.5 167 979-1156 226-414 (415)
105 cd00256 VATPase_H VATPase_H, r 92.7 31 0.00068 42.3 27.2 290 986-1292 105-424 (429)
106 KOG1058 Vesicle coat complex C 92.4 16 0.00034 46.5 22.0 108 1145-1252 314-428 (948)
107 PF11864 DUF3384: Domain of un 92.4 14 0.0003 46.1 22.4 294 963-1301 9-343 (464)
108 PF10363 DUF2435: Protein of u 91.9 0.65 1.4E-05 44.3 7.8 69 1222-1294 5-73 (92)
109 KOG1949 Uncharacterized conser 91.7 5 0.00011 50.3 16.5 142 987-1131 179-331 (1005)
110 KOG1517 Guanine nucleotide bin 91.7 1.5 3.3E-05 56.8 12.7 196 1059-1293 475-671 (1387)
111 smart00638 LPD_N Lipoprotein N 91.3 2.2 4.8E-05 54.6 14.1 176 983-1180 358-549 (574)
112 KOG2274 Predicted importin 9 [ 90.9 65 0.0014 42.2 32.1 53 762-815 729-781 (1005)
113 KOG0414 Chromosome condensatio 90.8 2.7 5.9E-05 55.5 13.9 184 958-1162 894-1086(1251)
114 PF01347 Vitellogenin_N: Lipop 90.4 2.9 6.2E-05 54.0 14.2 149 1018-1186 431-601 (618)
115 PF13251 DUF4042: Domain of un 90.2 4.5 9.8E-05 43.6 13.0 163 1117-1292 1-173 (182)
116 PF05918 API5: Apoptosis inhib 89.9 22 0.00047 44.8 20.2 156 960-1131 4-163 (556)
117 KOG0414 Chromosome condensatio 89.9 9.6 0.00021 50.7 17.6 127 1093-1252 292-431 (1251)
118 PF08064 UME: UME (NUC010) dom 89.8 0.52 1.1E-05 46.3 5.1 87 1024-1112 13-106 (107)
119 KOG1061 Vesicle coat complex A 89.8 11 0.00024 48.2 17.6 156 970-1131 108-268 (734)
120 PF12719 Cnd3: Nuclear condens 89.7 14 0.0003 43.1 17.9 109 979-1090 23-144 (298)
121 KOG2025 Chromosome condensatio 89.3 9.5 0.00021 48.1 16.1 194 979-1180 82-299 (892)
122 PF12830 Nipped-B_C: Sister ch 89.2 1.3 2.9E-05 47.9 8.3 69 1217-1292 5-73 (187)
123 smart00802 UME Domain in UVSB 89.2 0.7 1.5E-05 45.3 5.5 88 1023-1112 12-106 (107)
124 KOG1967 DNA repair/transcripti 88.9 1 2.3E-05 57.7 7.9 128 957-1084 883-1019(1030)
125 COG5116 RPN2 26S proteasome re 88.8 4.1 8.9E-05 49.7 12.3 133 1108-1299 522-656 (926)
126 PF10363 DUF2435: Protein of u 88.5 1.2 2.6E-05 42.5 6.4 69 983-1051 4-72 (92)
127 KOG1243 Protein kinase [Genera 88.4 2.9 6.2E-05 52.7 11.2 223 941-1180 252-480 (690)
128 PF12460 MMS19_C: RNAPII trans 88.4 71 0.0015 39.2 26.0 294 873-1174 59-392 (415)
129 KOG0567 HEAT repeat-containing 88.1 1.6 3.4E-05 49.0 7.8 49 1112-1174 230-278 (289)
130 KOG1059 Vesicle coat complex A 88.1 19 0.00042 45.6 17.6 207 1067-1292 98-364 (877)
131 PF14868 DUF4487: Domain of un 87.8 38 0.00082 42.9 20.5 261 1025-1297 269-556 (559)
132 KOG1525 Sister chromatid cohes 87.5 1.3E+02 0.0028 41.9 26.3 272 960-1292 41-328 (1266)
133 PF10274 ParcG: Parkin co-regu 87.4 1.6 3.5E-05 46.8 7.2 87 1059-1145 37-125 (183)
134 PF08064 UME: UME (NUC010) dom 87.3 2.7 5.9E-05 41.3 8.3 78 1073-1153 28-105 (107)
135 KOG2062 26S proteasome regulat 86.8 3.5 7.6E-05 51.9 10.4 135 1106-1292 558-695 (929)
136 PF08167 RIX1: rRNA processing 86.7 2.4 5.2E-05 45.0 8.1 119 979-1103 22-156 (165)
137 KOG1078 Vesicle coat complex C 86.3 29 0.00062 44.6 17.9 162 954-1131 218-383 (865)
138 PF08506 Cse1: Cse1; InterPro 85.8 22 0.00048 42.8 16.6 52 1231-1288 319-370 (370)
139 KOG0803 Predicted E3 ubiquitin 85.7 16 0.00036 50.1 16.7 220 1062-1298 43-268 (1312)
140 KOG2160 Armadillo/beta-catenin 84.9 16 0.00035 42.9 14.2 138 992-1131 93-240 (342)
141 KOG2274 Predicted importin 9 [ 84.8 53 0.0011 43.0 19.4 255 993-1283 502-770 (1005)
142 KOG1058 Vesicle coat complex C 84.8 1.3E+02 0.0029 38.8 23.8 47 1202-1248 299-345 (948)
143 PF13251 DUF4042: Domain of un 84.4 3.8 8.2E-05 44.2 8.2 102 1031-1132 49-175 (182)
144 KOG2973 Uncharacterized conser 83.6 29 0.00063 40.1 14.9 83 1220-1305 174-287 (353)
145 KOG1991 Nuclear transport rece 83.4 33 0.00071 45.2 17.0 136 495-678 390-532 (1010)
146 COG5116 RPN2 26S proteasome re 83.0 7.5 0.00016 47.6 10.6 133 1107-1291 556-691 (926)
147 PF05804 KAP: Kinesin-associat 82.8 1.7E+02 0.0037 38.4 25.5 138 1034-1177 503-650 (708)
148 KOG1293 Proteins containing ar 82.4 8.9 0.00019 48.1 11.2 142 1115-1292 390-532 (678)
149 PF08167 RIX1: rRNA processing 82.3 7.1 0.00015 41.5 9.4 133 1018-1153 21-164 (165)
150 PF10274 ParcG: Parkin co-regu 80.9 6.2 0.00013 42.5 8.1 112 1021-1133 37-166 (183)
151 PF03224 V-ATPase_H_N: V-ATPas 80.6 56 0.0012 38.4 17.0 161 1061-1235 106-274 (312)
152 COG5064 SRP1 Karyopherin (impo 80.3 12 0.00026 43.4 10.4 190 1061-1288 158-351 (526)
153 KOG1077 Vesicle coat complex A 80.0 1.9E+02 0.0041 37.2 25.4 259 996-1300 162-441 (938)
154 PF08569 Mo25: Mo25-like; Int 79.8 1.4E+02 0.0031 35.6 20.7 179 1110-1292 84-282 (335)
155 PF14500 MMS19_N: Dos2-interac 79.7 67 0.0014 36.9 16.6 228 1026-1269 3-256 (262)
156 COG5098 Chromosome condensatio 79.6 8.3 0.00018 48.3 9.5 128 962-1089 279-415 (1128)
157 KOG1949 Uncharacterized conser 79.5 17 0.00037 45.8 12.1 192 1023-1221 175-397 (1005)
158 KOG2122 Beta-catenin-binding p 79.2 1.4E+02 0.0031 41.3 20.6 218 872-1091 312-603 (2195)
159 KOG4199 Uncharacterized conser 79.2 1.2E+02 0.0025 35.8 17.7 196 1062-1304 243-456 (461)
160 PF12074 DUF3554: Domain of un 76.9 40 0.00087 40.0 14.5 186 979-1175 19-234 (339)
161 PF04118 Dopey_N: Dopey, N-ter 76.6 27 0.00059 40.9 12.5 169 1075-1287 70-248 (307)
162 COG5098 Chromosome condensatio 76.5 53 0.0011 41.7 14.9 109 1107-1249 304-415 (1128)
163 COG5218 YCG1 Chromosome conden 75.1 11 0.00023 46.6 8.7 87 1202-1294 70-162 (885)
164 PF14664 RICTOR_N: Rapamycin-i 74.7 99 0.0021 37.4 16.9 144 1022-1173 25-173 (371)
165 PF13001 Ecm29: Proteasome sta 74.6 20 0.00042 45.2 11.4 130 1085-1249 349-488 (501)
166 KOG0392 SNF2 family DNA-depend 74.0 19 0.00041 48.4 10.9 110 1022-1131 816-925 (1549)
167 KOG4413 26S proteasome regulat 73.8 1.9E+02 0.004 33.9 18.9 228 1018-1252 78-336 (524)
168 PF00514 Arm: Armadillo/beta-c 73.1 4.7 0.0001 32.0 3.6 29 1263-1292 12-40 (41)
169 KOG1020 Sister chromatid cohes 73.0 1.7E+02 0.0037 40.7 19.3 103 1023-1130 817-920 (1692)
170 KOG3678 SARM protein (with ste 72.7 93 0.002 37.7 15.2 218 1065-1295 185-454 (832)
171 KOG2160 Armadillo/beta-catenin 72.7 7.6 0.00016 45.6 6.5 69 1224-1293 128-196 (342)
172 KOG2022 Nuclear transport rece 72.4 3.3E+02 0.0071 36.1 23.8 146 955-1105 481-635 (982)
173 KOG0413 Uncharacterized conser 72.2 16 0.00035 47.5 9.5 126 1017-1159 963-1094(1529)
174 PF12726 SEN1_N: SEN1 N termin 71.7 3.4E+02 0.0074 36.0 25.5 98 1149-1249 443-553 (727)
175 KOG2973 Uncharacterized conser 71.6 7.5 0.00016 44.7 6.0 65 1222-1292 5-70 (353)
176 PF11698 V-ATPase_H_C: V-ATPas 71.1 9.5 0.00021 38.2 5.9 80 1213-1294 36-116 (119)
177 smart00802 UME Domain in UVSB 71.1 15 0.00034 36.1 7.4 75 1076-1153 31-105 (107)
178 PF10521 DUF2454: Protein of u 70.9 1.4E+02 0.0031 34.5 16.6 132 1048-1179 107-256 (282)
179 KOG0946 ER-Golgi vesicle-tethe 70.4 3.4E+02 0.0075 35.5 34.1 35 782-816 20-54 (970)
180 KOG0168 Putative ubiquitin fus 70.3 31 0.00068 44.6 11.4 195 988-1189 173-380 (1051)
181 KOG2933 Uncharacterized conser 69.4 21 0.00046 41.3 8.9 97 1074-1180 184-281 (334)
182 KOG2137 Protein kinase [Signal 68.8 39 0.00085 43.2 11.9 178 981-1169 348-530 (700)
183 KOG4535 HEAT and armadillo rep 68.3 16 0.00036 44.1 8.0 142 1033-1174 402-557 (728)
184 PF14664 RICTOR_N: Rapamycin-i 68.2 1.2E+02 0.0025 36.8 15.5 35 1264-1298 335-369 (371)
185 KOG1525 Sister chromatid cohes 65.9 4E+02 0.0087 37.3 21.1 263 979-1294 141-406 (1266)
186 PF10521 DUF2454: Protein of u 64.8 1.2E+02 0.0026 35.2 14.4 163 1090-1278 107-279 (282)
187 PF05536 Neurochondrin: Neuroc 63.3 4.2E+02 0.009 33.9 23.9 292 959-1301 94-415 (543)
188 PF12530 DUF3730: Protein of u 62.3 2.5E+02 0.0055 31.6 16.0 213 907-1126 1-234 (234)
189 KOG2149 Uncharacterized conser 61.8 33 0.00072 41.0 9.0 110 1024-1133 60-172 (393)
190 KOG1991 Nuclear transport rece 61.4 5.5E+02 0.012 34.6 50.1 305 971-1286 398-793 (1010)
191 cd06561 AlkD_like A new struct 58.6 31 0.00066 37.3 7.7 83 1203-1294 89-171 (197)
192 PF11865 DUF3385: Domain of un 57.4 61 0.0013 34.3 9.4 74 1057-1131 83-157 (160)
193 PF12765 Cohesin_HEAT: HEAT re 57.0 13 0.00028 30.1 3.2 28 1260-1288 15-42 (42)
194 KOG4500 Rho/Rac GTPase guanine 56.7 81 0.0018 38.1 10.8 109 983-1091 316-433 (604)
195 KOG1822 Uncharacterized conser 56.1 4.4E+02 0.0096 37.9 18.7 187 979-1166 819-1022(2067)
196 PLN03076 ARF guanine nucleotid 55.8 5.8E+02 0.013 37.3 20.7 165 993-1157 1194-1403(1780)
197 KOG0946 ER-Golgi vesicle-tethe 54.2 1.1E+02 0.0024 39.6 12.0 272 1022-1296 22-349 (970)
198 PF08713 DNA_alkylation: DNA a 53.6 1.3E+02 0.0028 32.8 11.7 156 1109-1294 26-185 (213)
199 PRK14707 hypothetical protein; 53.5 1E+03 0.022 35.3 28.4 338 924-1310 893-1263(2710)
200 KOG4500 Rho/Rac GTPase guanine 52.1 5.3E+02 0.011 31.6 18.8 161 1103-1297 316-479 (604)
201 PF05536 Neurochondrin: Neuroc 52.1 4.3E+02 0.0093 33.8 17.2 145 981-1132 4-169 (543)
202 PF12830 Nipped-B_C: Sister ch 51.1 1.3E+02 0.0029 32.5 11.0 117 1108-1233 14-143 (187)
203 KOG2137 Protein kinase [Signal 51.0 87 0.0019 40.3 10.5 109 1057-1174 386-494 (700)
204 PF12765 Cohesin_HEAT: HEAT re 50.4 15 0.00033 29.7 2.7 25 1021-1045 17-41 (42)
205 KOG0392 SNF2 family DNA-depend 49.0 1.8E+02 0.0038 39.9 13.0 160 1018-1179 204-388 (1549)
206 PF03130 HEAT_PBS: PBS lyase H 47.3 11 0.00025 27.2 1.4 27 1038-1071 1-27 (27)
207 KOG2933 Uncharacterized conser 46.7 3.7E+02 0.008 31.6 13.7 110 1061-1176 89-199 (334)
208 PF00514 Arm: Armadillo/beta-c 46.4 26 0.00055 27.8 3.4 29 1147-1175 12-40 (41)
209 KOG2005 26S proteasome regulat 43.6 4.5E+02 0.0098 33.9 14.6 53 1232-1293 652-704 (878)
210 COG5231 VMA13 Vacuolar H+-ATPa 41.7 5.7E+02 0.012 30.2 14.1 89 1200-1294 340-429 (432)
211 cd00197 VHS_ENTH_ANTH VHS, ENT 41.2 42 0.00092 33.1 4.8 66 2-67 41-114 (115)
212 KOG3961 Uncharacterized conser 40.8 51 0.0011 36.2 5.5 87 1059-1146 113-201 (262)
213 PF00790 VHS: VHS domain; Int 39.8 2.2E+02 0.0047 29.3 10.0 93 1202-1295 25-120 (140)
214 cd03572 ENTH_epsin_related ENT 39.7 2.1E+02 0.0045 29.0 9.3 91 1202-1294 21-120 (122)
215 PF14228 MOR2-PAG1_mid: Cell m 39.7 1.3E+03 0.027 32.4 22.7 84 1203-1294 490-573 (1120)
216 PF12054 DUF3535: Domain of un 39.7 7.8E+02 0.017 30.6 16.4 58 978-1035 121-181 (441)
217 KOG4413 26S proteasome regulat 39.2 7.1E+02 0.015 29.4 16.2 169 1017-1189 254-451 (524)
218 PF14961 BROMI: Broad-minded p 39.2 1.8E+02 0.0039 39.8 11.0 197 1025-1233 164-385 (1296)
219 KOG2081 Nuclear transport regu 36.4 9.7E+02 0.021 30.4 15.9 215 881-1105 318-552 (559)
220 PF08569 Mo25: Mo25-like; Int 35.5 8.4E+02 0.018 29.1 17.1 203 954-1167 54-274 (335)
221 cd03568 VHS_STAM VHS domain fa 35.4 3.3E+02 0.0072 28.3 10.5 88 726-816 23-112 (144)
222 PF01603 B56: Protein phosphat 35.3 5.7E+02 0.012 31.3 14.3 212 960-1175 105-369 (409)
223 cd03561 VHS VHS domain family; 35.1 3.3E+02 0.0072 27.7 10.4 90 1202-1293 20-112 (133)
224 PF11935 DUF3453: Domain of un 34.5 6.6E+02 0.014 28.4 13.6 70 1031-1131 2-72 (239)
225 PF12054 DUF3535: Domain of un 34.3 1E+03 0.022 29.6 18.2 202 1076-1296 103-345 (441)
226 PRK14707 hypothetical protein; 33.8 1.9E+03 0.041 32.7 30.1 378 876-1290 142-568 (2710)
227 KOG0413 Uncharacterized conser 33.7 4.1E+02 0.0088 35.6 12.4 160 1113-1293 483-645 (1529)
228 PF14225 MOR2-PAG1_C: Cell mor 33.4 8E+02 0.017 28.2 17.2 84 926-1012 132-218 (262)
229 PF01603 B56: Protein phosphat 33.3 3.4E+02 0.0074 33.3 11.9 132 958-1089 231-370 (409)
230 PF06685 DUF1186: Protein of u 33.3 7.7E+02 0.017 28.2 13.7 133 1060-1206 73-213 (249)
231 smart00288 VHS Domain present 31.5 3.3E+02 0.0072 27.8 9.6 90 1202-1293 20-111 (133)
232 KOG1048 Neural adherens juncti 31.1 8.9E+02 0.019 31.8 15.0 92 975-1071 230-330 (717)
233 smart00185 ARM Armadillo/beta- 31.1 67 0.0014 24.7 3.6 28 1264-1292 13-40 (41)
234 KOG2759 Vacuolar H+-ATPase V1 30.8 1.5E+02 0.0033 35.9 7.7 99 940-1046 327-433 (442)
235 PF08713 DNA_alkylation: DNA a 30.7 5.9E+02 0.013 27.6 12.3 65 1023-1090 121-185 (213)
236 cd03572 ENTH_epsin_related ENT 30.7 86 0.0019 31.7 5.0 67 1-67 41-118 (122)
237 cd03568 VHS_STAM VHS domain fa 30.0 3.5E+02 0.0075 28.2 9.6 89 1202-1292 20-109 (144)
238 KOG4524 Uncharacterized conser 29.8 1.9E+02 0.0041 38.5 9.0 81 1099-1180 800-880 (1014)
239 KOG2122 Beta-catenin-binding p 29.8 9.4E+02 0.02 34.2 15.1 227 1032-1292 360-600 (2195)
240 PF11935 DUF3453: Domain of un 29.1 5.7E+02 0.012 28.9 11.9 114 1156-1293 2-145 (239)
241 smart00567 EZ_HEAT E-Z type HE 28.4 40 0.00087 24.7 1.7 28 1037-1071 2-29 (30)
242 COG5234 CIN1 Beta-tubulin fold 28.0 5.2E+02 0.011 33.5 11.8 120 1052-1173 238-413 (993)
243 PF10304 DUF2411: Domain of un 27.7 1.2E+02 0.0025 23.9 4.2 30 1262-1291 4-33 (36)
244 KOG1293 Proteins containing ar 27.5 1.5E+03 0.032 29.4 21.4 209 989-1225 338-557 (678)
245 COG5209 RCD1 Uncharacterized p 27.4 3.7E+02 0.0081 30.0 9.3 144 1073-1238 113-274 (315)
246 cd03561 VHS VHS domain family; 26.8 1.3E+02 0.0029 30.6 5.8 65 3-68 42-112 (133)
247 PF13001 Ecm29: Proteasome sta 26.4 1E+03 0.022 30.1 14.7 106 1024-1131 321-443 (501)
248 cd00256 VATPase_H VATPase_H, r 26.3 1.3E+03 0.029 28.5 23.0 64 752-815 111-174 (429)
249 KOG0168 Putative ubiquitin fus 26.0 1.7E+03 0.038 29.8 21.8 84 1209-1293 540-629 (1051)
250 COG5101 CRM1 Importin beta-rel 25.9 3.8E+02 0.0082 34.2 10.0 85 268-364 487-580 (1053)
251 KOG2149 Uncharacterized conser 25.9 1.7E+02 0.0037 35.3 7.1 67 1064-1131 62-128 (393)
252 KOG1993 Nuclear transport rece 25.8 2.9E+02 0.0064 36.1 9.4 123 1161-1297 434-560 (978)
253 PF11698 V-ATPase_H_C: V-ATPas 25.8 97 0.0021 31.2 4.4 25 1064-1088 90-114 (119)
254 PF04003 Utp12: Dip2/Utp12 Fam 25.4 1.7E+02 0.0038 28.4 6.2 67 727-793 17-85 (110)
255 PF00790 VHS: VHS domain; Int 25.3 4.8E+02 0.01 26.7 9.7 88 726-816 28-120 (140)
256 cd03569 VHS_Hrs_Vps27p VHS dom 25.2 1.5E+02 0.0032 30.8 5.8 65 3-68 46-114 (142)
257 KOG4524 Uncharacterized conser 25.1 3.1E+02 0.0067 36.7 9.6 60 1124-1187 570-630 (1014)
258 PF08767 CRM1_C: CRM1 C termin 24.8 3.1E+02 0.0067 32.5 9.2 71 1018-1088 161-243 (319)
259 PF12397 U3snoRNP10: U3 small 24.8 4.6E+02 0.01 26.0 9.2 73 739-816 3-76 (121)
260 KOG2021 Nuclear mRNA export fa 24.5 1.5E+03 0.033 29.8 15.0 294 959-1279 413-750 (980)
261 cd03569 VHS_Hrs_Vps27p VHS dom 24.5 3.9E+02 0.0085 27.7 8.8 88 1204-1292 26-113 (142)
262 KOG2753 Uncharacterized conser 23.6 1.3E+03 0.028 27.5 13.7 89 1058-1152 45-133 (378)
263 KOG2021 Nuclear mRNA export fa 23.0 1.9E+03 0.04 29.1 17.0 65 975-1039 526-593 (980)
264 KOG1822 Uncharacterized conser 22.7 2.7E+03 0.058 30.9 21.8 153 957-1112 889-1049(2067)
265 PF12397 U3snoRNP10: U3 small 22.5 1.3E+02 0.0029 29.9 4.8 58 979-1036 3-61 (121)
266 cd00872 PI3Ka_I Phosphoinositi 21.3 2.2E+02 0.0048 30.6 6.3 45 1021-1067 72-116 (171)
267 COG5110 RPN1 26S proteasome re 21.0 1.8E+03 0.038 28.1 17.2 137 980-1125 411-551 (881)
268 PF07539 DRIM: Down-regulated 20.9 3.9E+02 0.0083 27.8 7.8 40 1021-1060 16-55 (141)
269 smart00185 ARM Armadillo/beta- 20.7 1.1E+02 0.0025 23.4 3.1 28 1061-1088 13-40 (41)
270 KOG2022 Nuclear transport rece 20.4 2.2E+03 0.048 29.0 27.9 396 295-789 457-884 (982)
271 smart00288 VHS Domain present 20.3 1.9E+02 0.0042 29.5 5.5 66 2-68 41-111 (133)
272 KOG3961 Uncharacterized conser 20.2 97 0.0021 34.2 3.3 56 1052-1107 147-204 (262)
273 cd08050 TAF6 TATA Binding Prot 20.0 1E+03 0.023 28.4 12.4 75 1075-1151 232-316 (343)
No 1
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.1e-51 Score=467.20 Aligned_cols=421 Identities=23% Similarity=0.262 Sum_probs=398.3
Q ss_pred ccchHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHHHHHhhhhccCCCCC-----------------CCChHHHHHH
Q 000737 869 IDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSG-----------------QHEPLRAILT 931 (1322)
Q Consensus 869 ~~~~~~laA~~aL~Ell~~~~~~~~~~v~~~fp~Lf~aLL~ql~~~~~l~~~~-----------------~~~P~~~ale 931 (1322)
.+.+.++-+|++++|...+. +....|-..||+||.-+++..++..++..+. -.+||+.+..
T Consensus 85 ~a~~~~~~~t~vl~e~~lti--~~g~~v~~lypqlf~llLllvscvlg~k~p~~lqa~~r~~~~~al~~~~~~pc~~~ta 162 (533)
T KOG2032|consen 85 QALALNACTTLVLVEPKLTI--ETGNRVMKLYPQLFSLLLLLVSCVLGLKSPDSLQALSRLEDVIALLKSLVAPCHSCTA 162 (533)
T ss_pred HHHHHHHHHHHHHHHHhhhh--hcCchHHHhhHHHHHHHHHHHHHHhhccCcccHHHHHHHHhHHHHHHhhhhHHHHhHH
Confidence 47788999999999999998 8899999999999999999999999986552 3779999999
Q ss_pred HHHHHHHHhCcHHHHHHHHhcCC-CC---chhhHHHhHHHHHHHHhhhCChhHHHHHHHHHhhhcccCccchHHHHHHHH
Q 000737 932 SFQAFCECVGDLEMRKILARDGE-QN---DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALS 1007 (1322)
Q Consensus 932 Alk~ll~~~g~~~~~~~Le~~~~-w~---~~~~~~~GV~lLar~l~~~~~~~~~~il~~l~~~l~s~~~~~Ri~a~afls 1007 (1322)
+++.+..+++.+.+.+..++.++ |. ++..|+.|++-++|.|+.+.++.++.|+.++.....|..+.+|++.+|||+
T Consensus 163 tl~cl~lqsa~e~~~~~sde~~~~w~qls~~~~h~~g~trlqr~m~~~~~~~~~~il~q~~ss~ts~~~~~ritd~Af~a 242 (533)
T KOG2032|consen 163 TLCCLILQSAEEAIQAVSDEVSRRWSQLSDNDIHRVGLTRLQRFMACVQDLEMGKILAQLLSSITSEKENGRITDIAFFA 242 (533)
T ss_pred HHHHHHHHHhHHHHHHhhhcccchhhhcccCcccHHHHHHHHHHHHhhCCccHHHHHhhcccccchhcccchHHHHHHHH
Confidence 99999999999999999999876 98 999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCc-hhchHHHHHHHHHhhcCCCChhHHhhhhhcccCCCc---hhHhhhHhHHHHHHHhhcccCC-hHHHHHHHH
Q 000737 1008 EFVRYSGG-FDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS---IHIHQYATQVLSVILALLDDLD-ESVQLTAVS 1082 (1322)
Q Consensus 1008 Ell~~~~~-~~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~---~~v~~~~~~lL~all~~L~d~d-~~V~leam~ 1082 (1322)
|+.+.+.. ...++.+++..+.+..+|||..+|.+|+|||||++. +|++.|.++++.+++.||+|.+ ++|++|||.
T Consensus 243 el~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~ 322 (533)
T KOG2032|consen 243 ELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMK 322 (533)
T ss_pred HHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 99998765 357888899999999999999999999999999975 8999999999999999999964 789999999
Q ss_pred HHHHHhccCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHHhccCCChh
Q 000737 1083 CLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLS 1162 (1322)
Q Consensus 1083 ~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~ 1162 (1322)
+|.++++.....++++|+++++.|+|+||++|++++|.+||.+||+|+++++|++++.|.|||.+.+.||++|++|++|.
T Consensus 323 ~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~ 402 (533)
T KOG2032|consen 323 CLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPY 402 (533)
T ss_pred HHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcchhhh-hhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhhHHHHH
Q 000737 1163 VRQACRNTLKQVAPFMEI-GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAI 1241 (1322)
Q Consensus 1163 V~~ack~tL~~~a~~L~~-~l~~lf~~~~~~~~~~l~~~~f~~~~~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~ 1241 (1322)
|+.||+.++..|.|.++. .+..+|+++. ++....+.+|++..|+.|...+|+.+..++.+...||+|.|+.+|.+|+
T Consensus 403 va~ACr~~~~~c~p~l~rke~~~~~q~~l--d~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t~~~~~f~sswe~vr~aav 480 (533)
T KOG2032|consen 403 VARACRSELRTCYPNLVRKELYHLFQESL--DTDMARFQAFYNQWCIQLNHIHPDILMLLLTEDQHIFSSSWEQVREAAV 480 (533)
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHHhhhh--HHhHHHHHHHHHHHHHHHhhhCHHHHHHHHHhchhheecchHHHHHHHH
Confidence 999999999999999999 9999999874 4434488999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccCchhhhhhccHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHH
Q 000737 1242 YFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKS 1294 (1322)
Q Consensus 1242 ~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~ 1294 (1322)
.+.|....++.++.+...|.+++..+|.. |.+||.|.|+..|.+|++.+.+.
T Consensus 481 l~t~~~vd~l~~~~c~~~d~~qL~~~ls~-l~~dp~pev~~~a~~al~~l~~~ 532 (533)
T KOG2032|consen 481 LKTTRSVDSLVRAACSSADGLQLRSSLST-LWRDPRPEVTDSARKALDLLSVK 532 (533)
T ss_pred HHHHHHHHHhHHHHHHHhhHHHHHHHHHH-HccCCCchhHHHHHHHhhhHhhc
Confidence 99999999999999999999999999999 89999999999999999998764
No 2
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=1.1e-14 Score=182.50 Aligned_cols=527 Identities=17% Similarity=0.194 Sum_probs=355.2
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHhhccCccccccHHHHHHHHHHHhhhcCcHHHHHHHH
Q 000737 727 IVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETL 806 (1322)
Q Consensus 727 i~~~i~~~L~~~el~~li~~ll~~L~d~~~~~~~~A~~~L~~~l~~~g~~L~e~~V~eI~~~i~~~L~~i~~~~~r~~~l 806 (1322)
++..+++.+-+++|.+++.-++++..+++.+-.+.|-.+|..+.+..|..+..- ..++...+-+.|.+.+.+ +|...+
T Consensus 103 viAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~-~~~l~~lf~q~~~d~s~~-vr~~a~ 180 (1075)
T KOG2171|consen 103 VIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPH-LDDLLRLFSQTMTDPSSP-VRVAAV 180 (1075)
T ss_pred HHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchh-HHHHHHHHHHhccCCcch-HHHHHH
Confidence 333455666666999999999999999999999999999999999999999655 889999999999999999 999999
Q ss_pred HHHHHHHhhcC-CCcccchhhhhhcCcchhhhHhhhcCCCcchhhhhcCCCCCCCCCCCCCCcccchHHHHHHHHHHHHH
Q 000737 807 GAISCLAENTN-SKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHGDMEKGDYSSHSADTWIDDDILQAAILALTAFF 885 (1322)
Q Consensus 807 ~aI~lLa~~h~-~~lp~d~w~al~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~laA~~aL~Ell 885 (1322)
+|+...+..+. .+ +.|..++ ..+..+.. ..++ +.+ .+ .+.....+..+|-|++
T Consensus 181 rA~~a~~~~~~~~~---~~~~~~~------~llP~~l~--vl~~-~i~---~~-----------d~~~a~~~l~~l~El~ 234 (1075)
T KOG2171|consen 181 RALGAFAEYLENNK---SEVDKFR------DLLPSLLN--VLQE-VIQ---DG-----------DDDAAKSALEALIELL 234 (1075)
T ss_pred HHHHHHHHHhccch---HHHHHHH------HHhHHHHH--HhHh-hhh---cc-----------chHHHHHHHHHHHHHH
Confidence 99999998872 11 1122110 00110000 0000 000 00 0111234455555655
Q ss_pred hcCCcchHHHHHHhhHHHHHHHHHHhhhhccCCCCCCCCh-HHHHHHHHHHHHHHh----------CcHHHHHHHH----
Q 000737 886 RGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEP-LRAILTSFQAFCECV----------GDLEMRKILA---- 950 (1322)
Q Consensus 886 ~~~~~~~~~~v~~~fp~Lf~aLL~ql~~~~~l~~~~~~~P-~~~aleAlk~ll~~~----------g~~~~~~~Le---- 950 (1322)
... -+.....+-++ ..+.++++.+.++ .++ +..|++-+-.+.... |..=+...|.
T Consensus 235 e~~----pk~l~~~l~~i-i~~~l~Ia~n~~l-----~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte 304 (1075)
T KOG2171|consen 235 ESE----PKLLRPHLSQI-IQFSLEIAKNKEL-----ENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTE 304 (1075)
T ss_pred hhc----hHHHHHHHHHH-HHHHHHHhhcccc-----cHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCC
Confidence 543 11222222222 4455666666665 233 335666333333220 1111111111
Q ss_pred --hcCCCC---------chhhHHHhHHHHHHHHhhhCCh--hHHHHHHHHHhhhcccCccchHHHHHHHHHHhhcCCc-h
Q 000737 951 --RDGEQN---------DKEKWINLIGDVAGCVSIKRPK--EVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGG-F 1016 (1322)
Q Consensus 951 --~~~~w~---------~~~~~~~GV~lLar~l~~~~~~--~~~~il~~l~~~l~s~~~~~Ri~a~aflsEll~~~~~-~ 1016 (1322)
.+..|. ...++.-|...|.| ++-+.++ .+++++.++..+++|++-.+|.+|...++-...+|.+ -
T Consensus 305 ~~~D~ew~~~d~~ded~~~~~~~~A~~~lDr-lA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m 383 (1075)
T KOG2171|consen 305 EEDDDEWSNEDDLDEDDEETPYRAAEQALDR-LALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVM 383 (1075)
T ss_pred cccchhhccccccccccccCcHHHHHHHHHH-HHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHH
Confidence 234663 35588899988776 4556554 6799999999999999999999999999999988866 3
Q ss_pred hchHHHHHHHHHhhcCCCChhHHhhhhhcccCCCc---hhH-hhhHhHHHHHHHhhcccCC-hHHHHHHHHHHHHHhccC
Q 000737 1017 DSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS---IHI-HQYATQVLSVILALLDDLD-ESVQLTAVSCLLTILKSS 1091 (1322)
Q Consensus 1017 ~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~---~~v-~~~~~~lL~all~~L~d~d-~~V~leam~~L~~ll~~l 1091 (1322)
...++++++..+++++||+|.||.+|+.++|+++. ..+ +++++.++++++..+++.. ..|..-|..+|-+..+..
T Consensus 384 ~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~ 463 (1075)
T KOG2171|consen 384 IGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEEC 463 (1075)
T ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhC
Confidence 45778899999999999999999999999999985 455 4566677779999999975 579999999999999999
Q ss_pred CcccchhhHHhHHH-HhccccccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHHhccC-CChhHHHHHHH
Q 000737 1092 SKDAVEPILLNLSV-RLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYD-DDLSVRQACRN 1169 (1322)
Q Consensus 1092 ~~~~~~~~l~~l~~-~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D-~~~~V~~ack~ 1169 (1322)
+...++||+..|.. ++.-+.++....||..+..+.|.++-.+ +....+|.+.++..|.-.+..-.| +.-.+|.++-.
T Consensus 464 ~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA-~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmE 542 (1075)
T KOG2171|consen 464 DKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAA-QEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTME 542 (1075)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH-hhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHH
Confidence 99999999999999 7778888899999999999999999744 677888988888887777665553 44567777777
Q ss_pred HHHhhcchhhh-hhh----hhhc---cc---cCCCCC-CCCh-HHHHHHHHHHHHHhCcchHHHHHHHHHhhh-------
Q 000737 1170 TLKQVAPFMEI-GVY----GIFN---SH---CFNSDH-RSDY-ETFVRDLTRQFVQHFPSRIDSYMGSTIQAF------- 1229 (1322)
Q Consensus 1170 tL~~~a~~L~~-~l~----~lf~---~~---~~~~~~-~l~~-~~f~~~~~k~L~~~~~~~~~~~l~~~l~yl------- 1229 (1322)
++.-+|.-.|- +.. ++.+ .. ...+++ ..+| -.|+..+|+.|.++|-..+...+--.+.--
T Consensus 543 cisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~ 622 (1075)
T KOG2171|consen 543 CLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVA 622 (1075)
T ss_pred HHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCccc
Confidence 77666655553 221 1111 11 111111 1233 458889999999988776665443322110
Q ss_pred ------------cCCC----------hhh-------HHHHHHHHHHhcccCchhhhhhccHHHHHH-HHHHHhccCCChH
Q 000737 1230 ------------EAPW----------PII-------QANAIYFSSSILCLCDDQHILSLFYTQVFG-LLVVKLSQSADAI 1279 (1322)
Q Consensus 1230 ------------kS~~----------~~I-------R~aA~~fiG~l~~~l~~~~~~~~~~e~l~~-~L~~~Ll~Dpdp~ 1279 (1322)
...| -.| |..|+-.+|.+..++.... ..+.++++. .+-. |+-...-.
T Consensus 623 ~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F--~pYve~v~~l~v~~-l~f~fhdg 699 (1075)
T KOG2171|consen 623 LSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKEAF--APYVEQVVELMVPL-LKFYFHDG 699 (1075)
T ss_pred CcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhh--hhHHHHHHHHHHHH-HHhhhhhH
Confidence 0111 111 3445555555543332222 234667777 3333 67789999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 000737 1280 VRATCSSSLGWLLKSIN 1296 (1322)
Q Consensus 1280 VR~~Aa~aL~~l~k~~~ 1296 (1322)
||..|++++..+.+.-+
T Consensus 700 VR~aa~~~~p~ll~~~~ 716 (1075)
T KOG2171|consen 700 VRKAAAESMPQLLTCAL 716 (1075)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999885544
No 3
>PRK09687 putative lyase; Provisional
Probab=99.15 E-value=2.8e-09 Score=122.09 Aligned_cols=54 Identities=11% Similarity=0.015 Sum_probs=38.0
Q ss_pred HHHHhhhcCCChhhHHHHHHHHHHhcccCchhhhhhccHHHHHHHHHHHhccCCChHHHHHHHHHHHH
Q 000737 1223 GSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGW 1290 (1322)
Q Consensus 1223 ~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~ 1290 (1322)
...+.+++++. +|..|+.-+|.+ +.+..+++|+..+.++||+.|+.+|.+|+..
T Consensus 226 ~~Li~~L~~~~--~~~~a~~ALg~i------------g~~~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 226 SVLIKELKKGT--VGDLIIEAAGEL------------GDKTLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHHHHcCCc--hHHHHHHHHHhc------------CCHhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 34445666655 566677667755 3466788898844459999999999999753
No 4
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=1.4e-06 Score=110.95 Aligned_cols=636 Identities=15% Similarity=0.162 Sum_probs=383.5
Q ss_pred HHHHHHHHhhccc-ccCCCCChhHHHHHHHHhh-hccccCCCCcccHHHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHH
Q 000737 493 TQALALSACTTLV-TVEPKLTIETRNHVMKATL-GFFALPNDPIDVVNPLIDNLITLLCAILLTSGEDGRSRADQLLHIL 570 (1322)
Q Consensus 493 ~r~~am~a~~~L~-~l~P~L~~e~~~~ll~~c~-~v~~lp~~~~~l~~~~~~aL~~lL~~ll~~~~~d~~~~~~~L~~il 570 (1322)
+||.|-.-+..|+ +.=|.++.|.|+.+.+..+ .++.=|. ...-+.+-++...+-.+.. +++--++|
T Consensus 53 ~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~~~~E~~------~~vr~k~~dviAeia~~~l------~e~WPell 120 (1075)
T KOG2171|consen 53 VRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQSETE------PSVRHKLADVIAEIARNDL------PEKWPELL 120 (1075)
T ss_pred HHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhccc------hHHHHHHHHHHHHHHHhcc------ccchHHHH
Confidence 8888877666554 6788899999999988777 6554442 2334556666666666655 23555677
Q ss_pred HHHHHHhcChhHHHhhHHHHHHHHHHHHHHhhhhcccccCCCCCCccchhhhhhhhhccCCCCCCcccCCchhhhhhhhH
Q 000737 571 RQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGNR 650 (1322)
Q Consensus 571 ~~l~pwl~S~~~~eR~RA~~~~~~lL~~f~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ps~f~~~~~~f~~lG~L 650 (1322)
+-|..-.+|+.+..||-|+.+...+...|-+ .. .+.+-.+
T Consensus 121 ~~L~q~~~S~~~~~rE~al~il~s~~~~~~~-----------------------------~~-----------~~~~~~l 160 (1075)
T KOG2171|consen 121 QFLFQSTKSPNPSLRESALLILSSLPETFGN-----------------------------TL-----------QPHLDDL 160 (1075)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHhhhhhhcc-----------------------------cc-----------chhHHHH
Confidence 7778888999999999999888777774421 01 1356677
Q ss_pred HHHhhccccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCcchhhhhhhhhchHHHHHHhhcCCCCChhHHHHHHHHH
Q 000737 651 VIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSEVFNRIVSS 730 (1322)
Q Consensus 651 vg~l~prC~D~~~~ir~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~~~~~~~~i~~~ 730 (1322)
.++|.=.-+|+...||-.|+.++.....- + + . +. ......++.
T Consensus 161 ~~lf~q~~~d~s~~vr~~a~rA~~a~~~~---~---~---~--~~----~~~~~~~~l---------------------- 203 (1075)
T KOG2171|consen 161 LRLFSQTMTDPSSPVRVAAVRALGAFAEY---L---E---N--NK----SEVDKFRDL---------------------- 203 (1075)
T ss_pred HHHHHHhccCCcchHHHHHHHHHHHHHHH---h---c---c--ch----HHHHHHHHH----------------------
Confidence 88899999999999999999998766422 1 0 0 00 011111111
Q ss_pred HhhcCChhHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHhhccCccccccHHHHHHHHHHHhhhc-CcHHHHHHHHHHH
Q 000737 731 VCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHI-TDKHLRLETLGAI 809 (1322)
Q Consensus 731 i~~~L~~~el~~li~~ll~~L~d~~~~~~~~A~~~L~~~l~~~g~~L~e~~V~eI~~~i~~~L~~i-~~~~~r~~~l~aI 809 (1322)
+..++..+-+-+.+.+...+..+-..|+.+++..+.=+.. .+..|++....-...- -+..+|+.++..|
T Consensus 204 ---------lP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~-~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~i 273 (1075)
T KOG2171|consen 204 ---------LPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRP-HLSQIIQFSLEIAKNKELENSIRHLALEFL 273 (1075)
T ss_pred ---------hHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHH-HHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 1223333334444444333334444455555544444422 2666666555544444 3677888899988
Q ss_pred HHHHhhcCCCcccchhhhhhcCcchhhhHhhhcCCCcchhhhhcCCCCCCCCCCCCCCcccchHHHHHHHHHHHHHhcCC
Q 000737 810 SCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHGDMEKGDYSSHSADTWIDDDILQAAILALTAFFRGGG 889 (1322)
Q Consensus 810 ~lLa~~h~~~lp~d~w~al~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~laA~~aL~Ell~~~~ 889 (1322)
+.++..-+. +-| +..++. ..+.|.. |..+-...+
T Consensus 274 vs~~e~Ap~-------------------~~k--~~~~~~---------------------~~lv~~~----l~~mte~~~ 307 (1075)
T KOG2171|consen 274 VSLSEYAPA-------------------MCK--KLALLG---------------------HTLVPVL----LAMMTEEED 307 (1075)
T ss_pred HHHHHhhHH-------------------Hhh--hchhhh---------------------ccHHHHH----HHhcCCccc
Confidence 888886210 000 000000 0000000 000000000
Q ss_pred cchHHHHHHhhHHHHHHHHHHhhhhccCCCC---CCCChHHHHHHHHHHHHHHhCcHHHHH----HHHh---cCCCCchh
Q 000737 890 KVGKKAVEKSYAPVLAALTLQLGSCHGLASS---GQHEPLRAILTSFQAFCECVGDLEMRK----ILAR---DGEQNDKE 959 (1322)
Q Consensus 890 ~~~~~~v~~~fp~Lf~aLL~ql~~~~~l~~~---~~~~P~~~aleAlk~ll~~~g~~~~~~----~Le~---~~~w~~~~ 959 (1322)
+ . -+.+.... ...+|.+.|.+++-.+=...|-..++- +++. ...|..-
T Consensus 308 -D-----~---------------ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R- 365 (1075)
T KOG2171|consen 308 -D-----D---------------EWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKER- 365 (1075)
T ss_pred -c-----h---------------hhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHH-
Confidence 0 0 00010000 124577788887766555556555543 2322 2456421
Q ss_pred hHHHhHHHHHHHHhhhCC----hhHHHHHHHHHhhhcccCccchHHHHHHHHHHhhc-CCc-hhchHHHHHHHHHhhcCC
Q 000737 960 KWINLIGDVAGCVSIKRP----KEVQTICLILTKSINRQQRFQREAAAAALSEFVRY-SGG-FDSLLEQMVEALCRHVSD 1033 (1322)
Q Consensus 960 ~~~~GV~lLar~l~~~~~----~~~~~il~~l~~~l~s~~~~~Ri~a~aflsEll~~-~~~-~~~ll~~~~~~L~~~l~D 1033 (1322)
+-|+.- ..++++..+ +.+++|+..++++++.++++-|-+|.-+++.+=-. ++. ....-+.+...|..-+.|
T Consensus 366 --~AaL~A-ls~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~ 442 (1075)
T KOG2171|consen 366 --HAALLA-LSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDS 442 (1075)
T ss_pred --HHHHHH-HHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcc
Confidence 222211 123333222 37899999999999999999999998888776433 122 223334466677777777
Q ss_pred C-ChhHHhhhhhcccCCCc----hhHhhhHhHHHHHHHhhcccCCh-HHHHHHHHHHHHHhccCCcccchhhHHhHHHHh
Q 000737 1034 E-SPTVRGLCLRGLVQIPS----IHIHQYATQVLSVILALLDDLDE-SVQLTAVSCLLTILKSSSKDAVEPILLNLSVRL 1107 (1322)
Q Consensus 1034 ~-~~~VR~lalrGLg~l~~----~~v~~~~~~lL~all~~L~d~d~-~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~l 1107 (1322)
+ ++.|..-|.-++-|... +.+..|-+.++...+..|.+.+. .|.-.++.+++.+-...+ ..+.+|+..+..-+
T Consensus 443 ~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~-~~F~pY~d~~Mp~L 521 (1075)
T KOG2171|consen 443 TQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ-EKFIPYFDRLMPLL 521 (1075)
T ss_pred cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh-hhhHhHHHHHHHHH
Confidence 6 67888888888887764 67889999999977777777664 588888999999988764 56789999999999
Q ss_pred ccccccCC----hhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHHhccCCChhHHH--------HHHHHHHhhc
Q 000737 1108 RNLQVSMN----VKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQ--------ACRNTLKQVA 1175 (1322)
Q Consensus 1108 rpffede~----~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~--------ack~tL~~~a 1175 (1322)
+.++.+.+ -.+|+..+...|-++..++++.+.++-+++++.+.-+-....|++.-.+. -||-=--..+
T Consensus 522 ~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~ 601 (1075)
T KOG2171|consen 522 KNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFA 601 (1075)
T ss_pred HHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhH
Confidence 88887544 56888999999999887766778888899988887774333333333332 2332223344
Q ss_pred chhhhhhhhhhccccCCCC---------------CCCCh----------------HH------HHHHHHHHHHHhCcchH
Q 000737 1176 PFMEIGVYGIFNSHCFNSD---------------HRSDY----------------ET------FVRDLTRQFVQHFPSRI 1218 (1322)
Q Consensus 1176 ~~L~~~l~~lf~~~~~~~~---------------~~l~~----------------~~------f~~~~~k~L~~~~~~~~ 1218 (1322)
|+|..-+..+|..-...++ .+.++ ++ -+..+++.+...|-.++
T Consensus 602 p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYv 681 (1075)
T KOG2171|consen 602 PFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYV 681 (1075)
T ss_pred hHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 5555433333332100000 00000 11 33445667777777766
Q ss_pred HHHHHH-HHhhhcCCChhhHHHHHHHHHHhcccC------chhhhhhccHHHHHHHHHHHhccCCChHHHHHHHHHHHHH
Q 000737 1219 DSYMGS-TIQAFEAPWPIIQANAIYFSSSILCLC------DDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWL 1291 (1322)
Q Consensus 1219 ~~~l~~-~l~ylkS~~~~IR~aA~~fiG~l~~~l------~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l 1291 (1322)
...+.. +....=-.+..+|.+|+..++.++... .+.....+ -+-++++++..+...|++.|-...-++++..
T Consensus 682 e~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l-~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~ 760 (1075)
T KOG2171|consen 682 EQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPEYLKQL-WEAIRPALIKALEEEPETEVLSEILESFAEC 760 (1075)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHH-HHHHHHHHHHHhhcCCcHHHHHHHHHHHHHH
Confidence 665552 222222344569999999999987522 12222212 2446667777688899999999999999999
Q ss_pred HHHhccccc
Q 000737 1292 LKSINSHSW 1300 (1322)
Q Consensus 1292 ~k~~~~~~~ 1300 (1322)
.|.++.+.-
T Consensus 761 i~~~G~~~L 769 (1075)
T KOG2171|consen 761 IEVMGDNCL 769 (1075)
T ss_pred HHhcCcccC
Confidence 988885543
No 5
>PRK09687 putative lyase; Provisional
Probab=99.09 E-value=3.5e-09 Score=121.21 Aligned_cols=224 Identities=13% Similarity=0.045 Sum_probs=113.5
Q ss_pred HHHHHhhcCCCChhHHhhhhhcccCCCchhHhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhH
Q 000737 1024 VEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNL 1103 (1322)
Q Consensus 1024 ~~~L~~~l~D~~~~VR~lalrGLg~l~~~~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l 1103 (1322)
++.|...+.|++..||..+++.|+.++.+ .+++.+...+.+.|..++..|..+|+.+...-. . ....
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~~-------~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~--~----~~~a 91 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGGQ-------DVFRLAIELCSSKNPIERDIGADILSQLGMAKR--C----QDNV 91 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCcc-------hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc--c----hHHH
Confidence 33455555666666666666666666542 234444444555556666666666666543110 0 0011
Q ss_pred HHHhcc-ccccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHHhccCCChhHHHHHHHHHHhhcchhhh-h
Q 000737 1104 SVRLRN-LQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-G 1181 (1322)
Q Consensus 1104 ~~~lrp-ffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~~-~ 1181 (1322)
...|.. +.+|+++.||.+|+.++|.+... +.... ...+-.+..++.|+++.||.++..+|+.++.--.. .
T Consensus 92 ~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~--~~~~~------~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~ 163 (280)
T PRK09687 92 FNILNNLALEDKSACVRASAINATGHRCKK--NPLYS------PKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPL 163 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhccccc--ccccc------hHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHH
Confidence 111222 24556666666666666665431 10000 01222334455566666666666666555432222 2
Q ss_pred hhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhhHHHHHHHHHHhcccCchhhhhhccH
Q 000737 1182 VYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFY 1261 (1322)
Q Consensus 1182 l~~lf~~~~~~~~~~l~~~~f~~~~~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~~~~~~~~~~ 1261 (1322)
+..++... + .+.=...+..|.+. +..-.......+..++++.+.||.+|++.+|.+. .
T Consensus 164 L~~~L~d~----~-----~~VR~~A~~aLg~~-~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~------------~ 221 (280)
T PRK09687 164 LINLLKDP----N-----GDVRNWAAFALNSN-KYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRK------------D 221 (280)
T ss_pred HHHHhcCC----C-----HHHHHHHHHHHhcC-CCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccC------------C
Confidence 22222111 0 00111112222221 1001112222344558889999999999888652 3
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHHHH
Q 000737 1262 TQVFGLLVVKLSQSADAIVRATCSSSLGWLLK 1293 (1322)
Q Consensus 1262 e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k 1293 (1322)
+.+++.|+. .++|++ ||..|++|||.++.
T Consensus 222 ~~av~~Li~-~L~~~~--~~~~a~~ALg~ig~ 250 (280)
T PRK09687 222 KRVLSVLIK-ELKKGT--VGDLIIEAAGELGD 250 (280)
T ss_pred hhHHHHHHH-HHcCCc--hHHHHHHHHHhcCC
Confidence 567788888 677766 78899999998873
No 6
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.98 E-value=1e-08 Score=135.51 Aligned_cols=287 Identities=18% Similarity=0.145 Sum_probs=188.3
Q ss_pred ChHHHHHHHHHHHHHHhCcHHHHHHHHhcCCCCchhhHHHhHHHHHHHHhhhCChhHHHHHHHHHhhhcccCccchHHHH
Q 000737 924 EPLRAILTSFQAFCECVGDLEMRKILARDGEQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAA 1003 (1322)
Q Consensus 924 ~P~~~aleAlk~ll~~~g~~~~~~~Le~~~~w~~~~~~~~GV~lLar~l~~~~~~~~~~il~~l~~~l~s~~~~~Ri~a~ 1003 (1322)
+|.+.-+-++.++ +...+...++... -+++.--..+|..|++ . .-+..+..|.+.|+.+++.-|.+|+
T Consensus 606 ~~~~~~~~~~~~l----~~~~~~~L~~~L~-D~d~~VR~~Av~~L~~----~---~~~~~~~~L~~aL~D~d~~VR~~Aa 673 (897)
T PRK13800 606 EPPSPRILAVLAL----DAPSVAELAPYLA-DPDPGVRRTAVAVLTE----T---TPPGFGPALVAALGDGAAAVRRAAA 673 (897)
T ss_pred CCchHHHHHHHhc----cchhHHHHHHHhc-CCCHHHHHHHHHHHhh----h---cchhHHHHHHHHHcCCCHHHHHHHH
Confidence 4445555556555 4443333333222 1144444444444333 2 2388889999999999999999999
Q ss_pred HHHHHHhhcCCchhchHHHHHHHHHhhcCCCChhHHhhhhhcccCCCchhHhhhHhHHHHHHHhhcccCChHHHHHHHHH
Q 000737 1004 AALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSC 1083 (1322)
Q Consensus 1004 aflsEll~~~~~~~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~~~v~~~~~~lL~all~~L~d~d~~V~leam~~ 1083 (1322)
..+.++...... ...|.+.+.|+++.||..+++.|+.+..... ..++..|.|.|..|+.+|+.+
T Consensus 674 ~aL~~l~~~~~~--------~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~--------~~l~~~L~D~d~~VR~~Av~a 737 (897)
T PRK13800 674 EGLRELVEVLPP--------APALRDHLGSPDPVVRAAALDVLRALRAGDA--------ALFAAALGDPDHRVRIEAVRA 737 (897)
T ss_pred HHHHHHHhccCc--------hHHHHHHhcCCCHHHHHHHHHHHHhhccCCH--------HHHHHHhcCCCHHHHHHHHHH
Confidence 999988543211 1356677889999999999999998764221 245677889999999999999
Q ss_pred HHHHhccCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHHhccCCChhH
Q 000737 1084 LLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSV 1163 (1322)
Q Consensus 1084 L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V 1163 (1322)
|+++-. ... +..+++|++..||.+|+..+|.+..... ..+..|+--++|+++.|
T Consensus 738 L~~~~~------~~~--------l~~~l~D~~~~VR~~aa~aL~~~~~~~~------------~~~~~L~~ll~D~d~~V 791 (897)
T PRK13800 738 LVSVDD------VES--------VAGAATDENREVRIAVAKGLATLGAGGA------------PAGDAVRALTGDPDPLV 791 (897)
T ss_pred HhcccC------cHH--------HHHHhcCCCHHHHHHHHHHHHHhccccc------------hhHHHHHHHhcCCCHHH
Confidence 998521 111 2357899999999999999999865111 01233344578999999
Q ss_pred HHHHHHHHHhhcch--hhhhhhhhhccccCCCCCCCChHHHHHH-HHHHHHHhCcchHHHHHHHHHhhhcCCChhhHHHH
Q 000737 1164 RQACRNTLKQVAPF--MEIGVYGIFNSHCFNSDHRSDYETFVRD-LTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANA 1240 (1322)
Q Consensus 1164 ~~ack~tL~~~a~~--L~~~l~~lf~~~~~~~~~~l~~~~f~~~-~~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA 1240 (1322)
|.++..+|+.++.- .--.+...+ .+. +..++. ....|..-.+. .-+...+..+++|.+.||.+|
T Consensus 792 R~aA~~aLg~~g~~~~~~~~l~~aL-----~d~-----d~~VR~~Aa~aL~~l~~~---~a~~~L~~~L~D~~~~VR~~A 858 (897)
T PRK13800 792 RAAALAALAELGCPPDDVAAATAAL-----RAS-----AWQVRQGAARALAGAAAD---VAVPALVEALTDPHLDVRKAA 858 (897)
T ss_pred HHHHHHHHHhcCCcchhHHHHHHHh-----cCC-----ChHHHHHHHHHHHhcccc---chHHHHHHHhcCCCHHHHHHH
Confidence 99999999998742 111122222 121 012233 34444433222 233556667899999999999
Q ss_pred HHHHHHhcccCchhhhhhccHHHHHHHHHHHhccCCChHHHHHHHHHHH
Q 000737 1241 IYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLG 1289 (1322)
Q Consensus 1241 ~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~ 1289 (1322)
+..+|.+- +......+|.. .++|+|+.||..|++||.
T Consensus 859 ~~aL~~~~-----------~~~~a~~~L~~-al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 859 VLALTRWP-----------GDPAARDALTT-ALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHHhccC-----------CCHHHHHHHHH-HHhCCCHHHHHHHHHHHh
Confidence 98888751 12345567777 788999999999999975
No 7
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.96 E-value=2.7e-08 Score=131.64 Aligned_cols=238 Identities=15% Similarity=0.058 Sum_probs=169.3
Q ss_pred HHHHHHhhhcccCccchHHHHHHHHHHhhcCCchhchHHHHHHHHHhhcCCCChhHHhhhhhcccCCCchhHhhhHhHHH
Q 000737 983 ICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVL 1062 (1322)
Q Consensus 983 il~~l~~~l~s~~~~~Ri~a~aflsEll~~~~~~~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~~~v~~~~~~lL 1062 (1322)
.+..|...|+++++.-|..|+..++++-. +..++.|.+.++|+++.||..|+.+|+.+..... ..
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~---------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~------~~ 686 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP---------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP------PA 686 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc---------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC------ch
Confidence 45577788899999999999999998632 3356788889999999999999999988853100 12
Q ss_pred HHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccCCcchHhHH
Q 000737 1063 SVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFL 1142 (1322)
Q Consensus 1063 ~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~ 1142 (1322)
+++...|++.|+.|+..|+.+|+.+-. .... .+...++|+++.||.+|+..+|.+.. .
T Consensus 687 ~~L~~~L~~~d~~VR~~A~~aL~~~~~----~~~~--------~l~~~L~D~d~~VR~~Av~aL~~~~~------~---- 744 (897)
T PRK13800 687 PALRDHLGSPDPVVRAAALDVLRALRA----GDAA--------LFAAALGDPDHRVRIEAVRALVSVDD------V---- 744 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhcc----CCHH--------HHHHHhcCCCHHHHHHHHHHHhcccC------c----
Confidence 456666777889999999999988642 1111 12246799999999999999998632 1
Q ss_pred HHHHHhHHHHHHhccCCChhHHHHHHHHHHhhcchhh--h-hhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCc-chH
Q 000737 1143 EQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFME--I-GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFP-SRI 1218 (1322)
Q Consensus 1143 eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~--~-~l~~lf~~~~~~~~~~l~~~~f~~~~~k~L~~~~~-~~~ 1218 (1322)
..|+..+.|+++.||.++..+|+..+.--. . .+..++ ++.. ...-......|.+..- ..+
T Consensus 745 -------~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll-----~D~d----~~VR~aA~~aLg~~g~~~~~ 808 (897)
T PRK13800 745 -------ESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALT-----GDPD----PLVRAAALAALAELGCPPDD 808 (897)
T ss_pred -------HHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHh-----cCCC----HHHHHHHHHHHHhcCCcchh
Confidence 123456899999999999999999875322 1 233332 2221 2232333444544432 222
Q ss_pred HHHHHHHHhhhcCCChhhHHHHHHHHHHhcccCchhhhhhccHHHHHHHHHHHhccCCChHHHHHHHHHHH
Q 000737 1219 DSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLG 1289 (1322)
Q Consensus 1219 ~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~ 1289 (1322)
....+..++++.+.||.+|+..+|.+- .++....|.. +++||++.||..|+.||+
T Consensus 809 ---~~~l~~aL~d~d~~VR~~Aa~aL~~l~------------~~~a~~~L~~-~L~D~~~~VR~~A~~aL~ 863 (897)
T PRK13800 809 ---VAAATAALRASAWQVRQGAARALAGAA------------ADVAVPALVE-ALTDPHLDVRKAAVLALT 863 (897)
T ss_pred ---HHHHHHHhcCCChHHHHHHHHHHHhcc------------ccchHHHHHH-HhcCCCHHHHHHHHHHHh
Confidence 223456789999999999999988653 2345577888 899999999999999984
No 8
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.77 E-value=0.0023 Score=80.20 Aligned_cols=931 Identities=16% Similarity=0.165 Sum_probs=459.4
Q ss_pred hhhhhcccccchhhHHHHHHhhhcCCChhhhh-cchHHHHHHHHHhhhcccHHHHHHHHHHHHHHhhcccccCCccccee
Q 000737 3 LLNKCRLKEEHLSVGALYVLKHLLPRSSEAWH-SKRPLLLEAVKSLLDEQNLAVQKAISELIVVMASHCYLIGPSGELFV 81 (1322)
Q Consensus 3 ll~~l~~~~E~~Rvg~L~vlrhlins~~~~~~-~k~~~i~~~~k~~l~d~~~kVr~a~~~~I~ama~~~yl~~~~g~~~i 81 (1322)
|+.||.+++--.|.-|.+=|-.=+|.+.-.++ +.-+-+++.+-.+|.|.|-.|..--++.+.-++.+ -++.=+
T Consensus 10 LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsK------vke~~l 83 (1233)
T KOG1824|consen 10 LLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSK------VKEDQL 83 (1233)
T ss_pred HHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhh------chHHHH
Confidence 67899999999999988877766665544443 44566777777788999999988777776666633 233346
Q ss_pred eeeeecccccCcccccccccccccCCCChhHHHHHHHHHHHHHhcccch---------hhhhhHHHHHhhccCcC-Cccc
Q 000737 82 EYLVRHCALSDQKKYVNESSKVKIGAFCPTELRAICEKGLLLLTITIPE---------MQHILWPLLLKMIIPRA-YTSA 151 (1322)
Q Consensus 82 ~fiv~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~L~lltttv~~---------m~~~LWP~LL~~i~~~~-yt~a 151 (1322)
++++...+-. .- ...++.|.++.=+|+.+-.-++. .=.-+-|.|-.++.-.+ +.++
T Consensus 84 e~~ve~L~~~---~~-----------s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai 149 (1233)
T KOG1824|consen 84 ETIVENLCSN---ML-----------SGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAI 149 (1233)
T ss_pred HHHHHHHhhh---hc-----------cchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhh
Confidence 7777554421 00 12246677777777665444431 11223344444444322 2222
Q ss_pred hhhHHHHHHHHHHhhccCCCcccccccCCCCCCChHHHHHHHHHHhcCccc-cchhHHHHHHHHHHhCCCCCcchhhhHH
Q 000737 152 AATVCRCISELCRHRSSSSNVMLSECKARDDIPNPEELFARLVVLLHDPLA-REQQATQILMVLYYLSPLFPTNIDLFWQ 230 (1322)
Q Consensus 152 l~~ick~l~~La~k~~~~~~~~~~~~~~~~~lPsp~~llaRllvl~~~P~~-~~~rg~~~L~lL~~l~~~i~~~l~~~W~ 230 (1322)
-|-|+-.++.-.+.. .++..+|+ ..++.=++--+++|-. -..+..-.|..|-...+ .....
T Consensus 150 ---~~e~lDil~d~lsr~-g~ll~~fh--------~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~------~~ly~ 211 (1233)
T KOG1824|consen 150 ---KCEVLDILADVLSRF-GTLLPNFH--------LSILKCLLPQLQSPRLAVRKKAITALGHLASSCN------RDLYV 211 (1233)
T ss_pred ---HHHHHHHHHHHHHhh-cccCcchH--------HHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcC------HHHHH
Confidence 222222222221111 11222332 1222222222333322 12345555555544444 34677
Q ss_pred hhHHHHHhhcccCCCCCCCcchHhhHHHHHHHHHHHhhhccccChHHHHHHHH---HHhhhccCC-CChhhHhHHHHHHH
Q 000737 231 DEIPKMKAYVSDTEDLKLDPSYQETWDDMIINFLAESLDVVQETDWLISLGNA---FTEQYVLYT-PDDDHSALLHRCLG 306 (1322)
Q Consensus 231 ~~Ip~Ll~~L~~~~~~~~~~~~~~~We~~Ll~fL~~sl~~i~d~~W~~~L~~e---l~~q~~~y~-~~~~eK~fL~k~~G 306 (1322)
.-|..|+.-|.+.+.+ +--.++=..|-...+.+ +..+..++..- +.+....-+ .+++-+-+..+.+|
T Consensus 212 ~li~~Ll~~L~~~~q~----~~~rt~Iq~l~~i~r~a-----g~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale 282 (1233)
T KOG1824|consen 212 ELIEHLLKGLSNRTQM----SATRTYIQCLAAICRQA-----GHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALE 282 (1233)
T ss_pred HHHHHHHhccCCCCch----HHHHHHHHHHHHHHHHh-----cchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHH
Confidence 8888888888776521 11123333333333332 22222222221 112111112 33445677788888
Q ss_pred HHHHhcCCh--hHHHHHHHHHHHh----cCcCCcc-------------------------c-----hhhHHHHHHHHhhh
Q 000737 307 ILLQKVADR--NYVCDKIDWMYKQ----ANIAIPT-------------------------N-----RLGLAKAMGLVAAS 350 (1322)
Q Consensus 307 ~~L~~~~~~--~~V~~~L~~ll~~----~~~~~~~-------------------------e-----reG~A~~~G~~A~~ 350 (1322)
..|..|... -++.+-+..+++- .||.... + |..-|+|+--.-++
T Consensus 283 ~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsS 362 (1233)
T KOG1824|consen 283 SFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISS 362 (1233)
T ss_pred HHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhc
Confidence 888877432 1222223333321 1222111 1 88889999888888
Q ss_pred cHHHHHHHHHHHHhhhcccchhhhhhhccccccccchHhHHHHHHHHHHHHHhcCCchhHHHHH-HHHhhhhhhhhhhhc
Q 000737 351 HLDAVLEMLKGILDNIGQSLFQRLLSFFSNSYRMEESDDIHAALALMYGYAAKYAPSTVIEARI-DALVGTNMLSRLLHV 429 (1322)
Q Consensus 351 Hld~vL~~L~~~~~~~~~~~~~~~l~~~k~~~~~~e~~~~ks~l~l~yg~va~~ap~~~il~~v-e~~I~~~i~~~~~~~ 429 (1322)
|.+-+.+..+..+- ..++-||++- |.+|+-++-.|=..-.+.++-. .+. |++- +.+ .
T Consensus 363 R~E~L~~~~q~l~p--------~lI~RfkERE-----EnVk~dvf~~yi~ll~qt~~~~--~~~~d~d~----~e~---~ 420 (1233)
T KOG1824|consen 363 RLEMLPDFYQTLGP--------ALISRFKERE-----ENVKADVFHAYIALLKQTRPVI--EVLADNDA----MEQ---G 420 (1233)
T ss_pred cHHHHHHHHHHhCH--------HHHHHHHHHh-----hhHHHHHHHHHHHHHHcCCCCc--ccccCchh----hhc---c
Confidence 88888887766654 2345566662 3688888777766666655321 010 0000 000 0
Q ss_pred CchhHHHHHHHHHHHHHHHHhhhhhcCCCcCCCCHHHHHHHHHHHhccCCCCCCCCchhhhhHHHHHHHHHhhcccccCC
Q 000737 430 RHHTAKQAVITAIDLLGRAVINAAENGASFPLKKRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEP 509 (1322)
Q Consensus 430 kd~~~K~s~l~si~~l~~av~~~~~~~~~f~f~~k~eLl~~l~~~i~~Ep~~~l~t~~~~l~~~r~~am~a~~~L~~l~P 509 (1322)
.-++-.-.+-+.+-.|.++|++. ++ | ++. + +|+.++.-.+.|+.+-|
T Consensus 421 g~~s~~~~L~~~~~~iVkai~~q----------------------lr-~--ks~--k------t~~~cf~lL~eli~~lp 467 (1233)
T KOG1824|consen 421 GTPSDLSMLSDQVPLIVKAIQKQ----------------------LR-E--KSV--K------TRQGCFLLLTELINVLP 467 (1233)
T ss_pred CCccchHHHHhhhHHHHHHHHHH----------------------Hh-h--ccc--c------chhhHHHHHHHHHHhCc
Confidence 00111133334445555555442 22 1 121 2 56777777777766655
Q ss_pred CCChhHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHhcC-hhH--H-Hh
Q 000737 510 KLTIETRNHVMKATLGFFALPNDPIDVVNPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSS-PVE--Y-QR 585 (1322)
Q Consensus 510 ~L~~e~~~~ll~~c~~v~~lp~~~~~l~~~~~~aL~~lL~~ll~~~~~d~~~~~~~L~~il~~l~pwl~S-~~~--~-eR 585 (1322)
-.-.+....++... .|.+| ..+..-+.-|++|.-+...+...+ |+.+..+++.|.|-+.- -.+ | --
T Consensus 468 ~~l~~~~~slvpgI--~~~l~-DkSsss~~ki~~L~fl~~~L~s~~-------p~~fhp~~~~Ls~~v~~aV~d~fyKis 537 (1233)
T KOG1824|consen 468 GALAQHIPSLVPGI--IYSLN-DKSSSSNLKIDALVFLYSALISHP-------PEVFHPHLSALSPPVVAAVGDPFYKIS 537 (1233)
T ss_pred chhhhcccccchhh--hhhcC-CccchHHHHHHHHHHHHHHHhcCC-------hhhcccchhhhhhHHHHHhcCchHhhh
Confidence 44433333333221 12333 112355667888887777777665 46777777666554421 111 1 11
Q ss_pred hHHHHHHHHHHHHHHhhhhcccccCCCCCCccchhhhhhhhhccCCCCCCcccCCchhhhhhhhHHH--HhhccccCCCh
Q 000737 586 RRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRVI--MYLPRCADTDS 663 (1322)
Q Consensus 586 ~RA~~~~~~lL~~f~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ps~f~~~~~~f~~lG~Lvg--~l~prC~D~~~ 663 (1322)
.-|+..+..+.++-+ ....|+.|+.++ ..|.+.. +=-+.-.|.|.
T Consensus 538 aEAL~v~~~lvkvir-----------------------------pl~~~~~~d~~~----~v~~m~~~tl~rL~a~d~Dq 584 (1233)
T KOG1824|consen 538 AEALLVCQQLVKVIR-----------------------------PLQPPSSFDASP----YVKTMYDCTLQRLKATDSDQ 584 (1233)
T ss_pred HHHHHHHHHHHHHhc-----------------------------ccCCCccCCCCh----hHHHHHHHHHHHHhcccccH
Confidence 223333333333111 112233344332 3444432 22345789999
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCCCCCCCcchhhhhhhhhchHHHHHHhhcCCCCChhHHHHHHHHHHhhcCC-hhHHHH
Q 000737 664 EVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSEVFNRIVSSVCILLT-KDELVA 742 (1322)
Q Consensus 664 ~ir~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~~~~~~~~i~~~i~~~L~-~~el~~ 742 (1322)
+||..|+.||..+..- + . ..-+... ..... --++++++.+..+.. ..-+..|+-+- -.++ ...++.
T Consensus 585 eVkeraIscmgq~i~~-f-g-D~l~~eL--~~~L~-il~eRl~nEiTRl~A------vkAlt~Ia~S~-l~i~l~~~l~~ 651 (1233)
T KOG1824|consen 585 EVKERAISCMGQIIAN-F-G-DFLGNEL--PRTLP-ILLERLGNEITRLTA------VKALTLIAMSP-LDIDLSPVLTE 651 (1233)
T ss_pred HHHHHHHHHHHHHHHH-H-h-hhhhhhh--HHHHH-HHHHHHhchhHHHHH------HHHHHHHHhcc-ceeehhhhHHH
Confidence 9999999999887543 2 1 0000000 00000 011222222111100 00011222210 1222 233444
Q ss_pred HHHHHHHhccCCChhhHHHHHHHHHHHHhhccCccccccHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHhhcCCCccc
Q 000737 743 TLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSKIVF 822 (1322)
Q Consensus 743 li~~ll~~L~d~~~~~~~~A~~~L~~~l~~~g~~L~e~~V~eI~~~i~~~L~~i~~~~~r~~~l~aI~lLa~~h~~~lp~ 822 (1322)
.+..+..-++-.+.....+.-..++.+++..|..+ -++.++.+..+|+..-+++-...+-.|+..|+.-..-+ |
T Consensus 652 il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~----~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~-p- 725 (1233)
T KOG1824|consen 652 ILPELASFLRKNQRALRLATLTALDKLVKNYSDSI----PAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQ-P- 725 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----cHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcc-c-
Confidence 44445444544444455666677899999998888 24667888888888877777777777776666543110 0
Q ss_pred chhhhhhcCcchhhhHhhhcCCCcchhhhhcCCCCCCCCCCCCCCcccchHHHHHHHHHHHHHhcCCcchHHHHHHhhHH
Q 000737 823 NEVLATAGKDIVTKDISRLRGGWPMQDAFHGDMEKGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAP 902 (1322)
Q Consensus 823 d~w~al~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~laA~~aL~Ell~~~~~~~~~~v~~~fp~ 902 (1322)
... ++....+...+.++.+++ +....|..++-.+|. ..|..-+|.
T Consensus 726 s~l--~~~~~~iL~~ii~ll~Sp--------------------------llqg~al~~~l~~f~-------alV~t~~~~ 770 (1233)
T KOG1824|consen 726 SSL--LKISNPILDEIIRLLRSP--------------------------LLQGGALSALLLFFQ-------ALVITKEPD 770 (1233)
T ss_pred HHH--HHHhhhhHHHHHHHhhCc--------------------------cccchHHHHHHHHHH-------HHHhcCCCC
Confidence 000 000001111111111000 011122222222111 112211111
Q ss_pred HHHHHHHHhhhhccCCCCCCCChHHHHHHHHHHHHHHhCcHHHHHHHHhcCCCCchhhHHHhHHHHHHHHh---hhCChh
Q 000737 903 VLAALTLQLGSCHGLASSGQHEPLRAILTSFQAFCECVGDLEMRKILARDGEQNDKEKWINLIGDVAGCVS---IKRPKE 979 (1322)
Q Consensus 903 Lf~aLL~ql~~~~~l~~~~~~~P~~~aleAlk~ll~~~g~~~~~~~Le~~~~w~~~~~~~~GV~lLar~l~---~~~~~~ 979 (1322)
+ + ...+-..+.+--++++. ...|.++-.-+|++.| ...|..
T Consensus 771 l---------------------~----y~~l~s~lt~PV~~~~~-----------~~l~kqa~~siA~cvA~Lt~~~~~~ 814 (1233)
T KOG1824|consen 771 L---------------------D----YISLLSLLTAPVYEQVT-----------DGLHKQAYYSIAKCVAALTCACPQK 814 (1233)
T ss_pred c---------------------c----HHHHHHHHcCCcccccc-----------cchhHHHHHHHHHHHHHHHHhcccc
Confidence 1 0 11111111111222111 1233333333455443 334445
Q ss_pred HHHHHHHHHhhhcc--cCccchHHHHHHHHHHhhcCCchhchHHHHHHHHHhhcCCCChhHHhhhhhcccCCCchhHhhh
Q 000737 980 VQTICLILTKSINR--QQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQY 1057 (1322)
Q Consensus 980 ~~~il~~l~~~l~s--~~~~~Ri~a~aflsEll~~~~~~~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~~~v~~~ 1057 (1322)
-+++...+..-+++ .+++-|+.|+..|+|+-+.-... .-..+-..+.+.++.|+..|+.+|-.+||+++.....+|
T Consensus 815 s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s--~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~y 892 (1233)
T KOG1824|consen 815 SKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLS--PQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKY 892 (1233)
T ss_pred chhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCC--cchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhH
Confidence 67788888777775 45667788888899988765431 111223377788999999999999999999987455555
Q ss_pred HhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhh------
Q 000737 1058 ATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN------ 1131 (1322)
Q Consensus 1058 ~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~------ 1131 (1322)
-|-++.-+-. ++.-..--+.+|..++....-....++..+|=-.+..--|...+..|..-.+.+|.|+-
T Consensus 893 Lpfil~qi~s-----qpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epesL 967 (1233)
T KOG1824|consen 893 LPFILEQIES-----QPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPESL 967 (1233)
T ss_pred HHHHHHHHhc-----chHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChHHH
Confidence 4444433321 12222222333444443333333444444444444444444555555555555555543
Q ss_pred ------------------------ccCCcchHhHHHHHHHhHHHHHHhccCCChhHHHHHHHHHHhhc
Q 000737 1132 ------------------------FGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVA 1175 (1322)
Q Consensus 1132 ------------------------~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a 1175 (1322)
|.......++..-+.+.+-.++.-++|++..||+.+--+|-..+
T Consensus 968 lpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaa 1035 (1233)
T KOG1824|consen 968 LPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAA 1035 (1233)
T ss_pred HHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence 12222333444445667778888999999999999998887666
No 9
>PTZ00429 beta-adaptin; Provisional
Probab=98.76 E-value=2.6e-06 Score=108.82 Aligned_cols=309 Identities=12% Similarity=0.110 Sum_probs=201.4
Q ss_pred hhhHHHhHHHHHHHHhhhCChhHHHHHHHHHhhhcccCccchHHHHHHHHHHhhcCCchhchHHHHHHHHHhhcCCCChh
Q 000737 958 KEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPT 1037 (1322)
Q Consensus 958 ~~~~~~GV~lLar~l~~~~~~~~~~il~~l~~~l~s~~~~~Ri~a~aflsEll~~~~~~~~ll~~~~~~L~~~l~D~~~~ 1037 (1322)
...-.+|+..+...|... ..+..++-.+++.+++.+-..|...-.++..+....++. .--++|.+.+-++|+||.
T Consensus 46 ~~~kk~alKkvIa~mt~G--~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pel---alLaINtl~KDl~d~Np~ 120 (746)
T PTZ00429 46 SYRKKAAVKRIIANMTMG--RDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEK---ALLAVNTFLQDTTNSSPV 120 (746)
T ss_pred HHHHHHHHHHHHHHHHCC--CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHH---HHHHHHHHHHHcCCCCHH
Confidence 455578887777777654 357788888888999999999999988888876643331 122588999999999999
Q ss_pred HHhhhhhcccCCCchhHhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCChh
Q 000737 1038 VRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVK 1117 (1322)
Q Consensus 1038 VR~lalrGLg~l~~~~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~ 1117 (1322)
||.+|||.|+++...++ .+.+++++..++.|.++-|+..|..++.++.+.-. +.+. -..+..++..++.|.++.
T Consensus 121 IRaLALRtLs~Ir~~~i---~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p-elv~--~~~~~~~L~~LL~D~dp~ 194 (746)
T PTZ00429 121 VRALAVRTMMCIRVSSV---LEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM-QLFY--QQDFKKDLVELLNDNNPV 194 (746)
T ss_pred HHHHHHHHHHcCCcHHH---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc-cccc--ccchHHHHHHHhcCCCcc
Confidence 99999999999987543 56789999999999999999999999999986432 2111 001234455578999999
Q ss_pred HHHHHHHHHHHHhhccCC-----------------cchHhH------------------HHHHHHhHHHHHHhccCCChh
Q 000737 1118 MRRNAFAAFGALSNFGVG-----------------SQREAF------------------LEQIHAMLPRLILHIYDDDLS 1162 (1322)
Q Consensus 1118 vR~aAi~lfG~L~~~~~~-----------------~~~~~~------------------~eqv~~~LvpLLlHL~D~~~~ 1162 (1322)
|...|+.++-++...... +..++. .+.++..+. -+|+-.|+.
T Consensus 195 Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~---~~Lq~~N~A 271 (746)
T PTZ00429 195 VASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVL---PRMSHQNPA 271 (746)
T ss_pred HHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHH---HHhcCCCHH
Confidence 999999988887642110 000111 112333333 355667899
Q ss_pred HHHHHHHHHHhhcchhhh-hhhhhhcc------ccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChh
Q 000737 1163 VRQACRNTLKQVAPFMEI-GVYGIFNS------HCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPI 1235 (1322)
Q Consensus 1163 V~~ack~tL~~~a~~L~~-~l~~lf~~------~~~~~~~~l~~~~f~~~~~k~L~~~~~~~~~~~l~~~l~ylkS~~~~ 1235 (1322)
|+-+|..++...++...- ....++.+ .....+....|- .++. ...+.+.+|+.+..++..-.-.+++|..
T Consensus 272 VVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~ss~~eiqyv-aLr~-I~~i~~~~P~lf~~~~~~Ff~~~~Dp~y- 348 (746)
T PTZ00429 272 VVMGAIKVVANLASRCSQELIERCTVRVNTALLTLSRRDAETQYI-VCKN-IHALLVIFPNLLRTNLDSFYVRYSDPPF- 348 (746)
T ss_pred HHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhCCCccHHHH-HHHH-HHHHHHHCHHHHHHHHHhhhcccCCcHH-
Confidence 999999998888765432 22222111 001111223341 2222 3666777787766665543344455553
Q ss_pred hHHHHHHHHHHhcccCchhhhhhccHHHHHHHHHHHhccCCChHHHHHHHHHHHHHH
Q 000737 1236 IQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1292 (1322)
Q Consensus 1236 IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1292 (1322)
||..+.-.+-.+.+. + ..+.+++-|.+ -..|.|+.+++.|.+|+|.+.
T Consensus 349 IK~~KLeIL~~Lane---~-----Nv~~IL~EL~e-Ya~d~D~ef~r~aIrAIg~lA 396 (746)
T PTZ00429 349 VKLEKLRLLLKLVTP---S-----VAPEILKELAE-YASGVDMVFVVEVVRAIASLA 396 (746)
T ss_pred HHHHHHHHHHHHcCc---c-----cHHHHHHHHHH-HhhcCCHHHHHHHHHHHHHHH
Confidence 777666555544432 1 23555555666 355777777777777777766
No 10
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=3.2e-06 Score=99.10 Aligned_cols=489 Identities=28% Similarity=0.269 Sum_probs=271.3
Q ss_pred hhcCchhHHHHHHHHHHHHHHHHhhhhhcCCCcCCCCHHHHHHHHHHHhccCCCCCCCCchhhhhHHHHHHHHHhhcccc
Q 000737 427 LHVRHHTAKQAVITAIDLLGRAVINAAENGASFPLKKRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVT 506 (1322)
Q Consensus 427 ~~~kd~~~K~s~l~si~~l~~av~~~~~~~~~f~f~~k~eLl~~l~~~i~~Ep~~~l~t~~~~l~~~r~~am~a~~~L~~ 506 (1322)
++....+.|++-+.+....+.++....+.+.-|+.+++++.++++...|..|-.. -+..+.......+..+|+.++-
T Consensus 21 ~h~~h~~a~~~~~~s~~l~~~s~i~a~~~~~~~pl~~rdq~l~~i~~~mg~~~~a---~sl~~v~~~~a~~~~~~~t~vl 97 (533)
T KOG2032|consen 21 LHVRHQTAKQAVITAIDLLGRSVINAAETGATFPLKRRDQMLDYILTLMGREGFA---ESLLEVLHTQALALNACTTLVL 97 (533)
T ss_pred HHHHHHHHHHHHHHcccccchHHHHHHHhhcCCchhhHHHHHHHHHHhhchhhhh---hhhcchhhhHHHHHHHHHHHHH
Confidence 3556778899999999999999998887777889999999999999999875322 1222334467788999999999
Q ss_pred cCCCCChhHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHhcChhHHHhh
Q 000737 507 VEPKLTIETRNHVMKATLGFFALPNDPIDVVNPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEYQRR 586 (1322)
Q Consensus 507 l~P~L~~e~~~~ll~~c~~v~~lp~~~~~l~~~~~~aL~~lL~~ll~~~~~d~~~~~~~L~~il~~l~pwl~S~~~~eR~ 586 (1322)
.+|.++.+++..++. +|.+++.-+. +...-.|..-..++-++
T Consensus 98 ~e~~lti~~g~~v~~--------------lypqlf~llL------------------------llvscvlg~k~p~~lqa 139 (533)
T KOG2032|consen 98 VEPKLTIETGNRVMK--------------LYPQLFSLLL------------------------LLVSCVLGLKSPDSLQA 139 (533)
T ss_pred HHHhhhhhcCchHHH--------------hhHHHHHHHH------------------------HHHHHHhhccCcccHHH
Confidence 999999988888773 3333333222 22223333222222222
Q ss_pred HHHHHHHHHHHHHHhhhhcccccCCCCCCccchhhhhhhhhccCCCCCCcccCCchhhhhhhhHHH-HhhccccCCChhH
Q 000737 587 RSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRVI-MYLPRCADTDSEV 665 (1322)
Q Consensus 587 RA~~~~~~lL~~f~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ps~f~~~~~~f~~lG~Lvg-~l~prC~D~~~~i 665 (1322)
+-...+...++ +....+-.+| .. +..|+|.+.| ..+..|+|-++.+
T Consensus 140 ~~r~~~~~al~-~~~~~pc~~~---------------------ta-----------tl~cl~lqsa~e~~~~~sde~~~~ 186 (533)
T KOG2032|consen 140 LSRLEDVIALL-KSLVAPCHSC---------------------TA-----------TLCCLILQSAEEAIQAVSDEVSRR 186 (533)
T ss_pred HHHHHhHHHHH-HhhhhHHHHh---------------------HH-----------HHHHHHHHHhHHHHHHhhhcccch
Confidence 22233444444 3221111111 11 2359999999 8999999999998
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCCCCCcchhhhhhhhhchHHHHHHhhcCCCCChhHHH---HHHHHHHhhcCCh--hHH
Q 000737 666 RKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSEVF---NRIVSSVCILLTK--DEL 740 (1322)
Q Consensus 666 r~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~~~~~~---~~i~~~i~~~L~~--~el 740 (1322)
-.++.....|...++- +++..+... +.+ -.+.+..+ +.++++..++... ..+++...+..-+ +-+
T Consensus 187 w~qls~~~~h~~g~tr-lqr~m~~~~--~~~----~~~il~q~---~ss~ts~~~~~ritd~Af~ael~~~~~l~~~~lL 256 (533)
T KOG2032|consen 187 WSQLSDNDIHRVGLTR-LQRFMACVQ--DLE----MGKILAQL---LSSITSEKENGRITDIAFFAELKRPKELDKTGLL 256 (533)
T ss_pred hhhcccCcccHHHHHH-HHHHHHhhC--Ccc----HHHHHhhc---ccccchhcccchHHHHHHHHHHhCcccccccccH
Confidence 8888888888888754 333211111 110 00111111 1111111112211 1345555555555 667
Q ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHHHhhccCccccccHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHhhcCCCc
Q 000737 741 VATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSKI 820 (1322)
Q Consensus 741 ~~li~~ll~~L~d~~~~~~~~A~~~L~~~l~~~g~~L~e~~V~eI~~~i~~~L~~i~~~~~r~~~l~aI~lLa~~h~~~l 820 (1322)
.+++..+.+...||+.....-|+..|-.+......+. .+.++.++++|+..|.+....+|. +.+|..|+.-.....
T Consensus 257 ~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv-~th~~~~ldaii~gL~D~~~~~V~---leam~~Lt~v~~~~~ 332 (533)
T KOG2032|consen 257 GSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKV-RTHKTTQLDAIIRGLYDDLNEEVQ---LEAMKCLTMVLEKAS 332 (533)
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHH-HHhHHHHHHHHHHHHhcCCccHHH---HHHHHHHHHHHHhhh
Confidence 8999999999999999888888877777776645555 345899999999999999886665 455555554321111
Q ss_pred ccchhhhhhcCcchhhhHhhhcCCCcchhhhhcCCCCCCCCCCCCCCcccchHHHHHHHHHHHHHhcCCcchHH----HH
Q 000737 821 VFNEVLATAGKDIVTKDISRLRGGWPMQDAFHGDMEKGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKK----AV 896 (1322)
Q Consensus 821 p~d~w~al~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~laA~~aL~Ell~~~~~~~~~----~v 896 (1322)
.|. + .+..+...+. ++ ++++ .+. +-+..+|...++.+...-++..++ +|
T Consensus 333 ---~~~-l-~~~~l~ialr-lR---~l~~-----se~-------------~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v 385 (533)
T KOG2032|consen 333 ---NDD-L-ESYLLNIALR-LR---TLFD-----SED-------------DKMRAAAFVLFGALAKLAGGGWEEFFTEQV 385 (533)
T ss_pred ---hcc-h-hhhchhHHHH-HH---HHHH-----hcC-------------hhhhhhHHHHHHHHHHHcCCCchhhhHHHH
Confidence 011 0 0000001111 11 2332 001 011223333333333222212221 22
Q ss_pred HHhhHHHHHHHHHHhhhhccCCCCCCCChHHHHHHHHHHHHHH----hCcHHHHHHHHhcCCCCchhhHHHhHHHHHHH-
Q 000737 897 EKSYAPVLAALTLQLGSCHGLASSGQHEPLRAILTSFQAFCEC----VGDLEMRKILARDGEQNDKEKWINLIGDVAGC- 971 (1322)
Q Consensus 897 ~~~fp~Lf~aLL~ql~~~~~l~~~~~~~P~~~aleAlk~ll~~----~g~~~~~~~Le~~~~w~~~~~~~~GV~lLar~- 971 (1322)
.+-+..++.-+ ...+| +...|.+..+.. .+..++.....+.- +.-.+ +-++ .-+.
T Consensus 386 ~k~~~~lllhl-------------~d~~p--~va~ACr~~~~~c~p~l~rke~~~~~q~~l--d~~~~-~~q~--Fyn~~ 445 (533)
T KOG2032|consen 386 KKRLAPLLLHL-------------QDPNP--YVARACRSELRTCYPNLVRKELYHLFQESL--DTDMA-RFQA--FYNQW 445 (533)
T ss_pred Hhccccceeee-------------CCCCh--HHHHHHHHHHHhcCchhHHHHHHHHHhhhh--HHhHH-HHHH--HHHHH
Confidence 22222222211 12345 444445554443 23333333333211 10011 1111 1223
Q ss_pred ---HhhhCChhHHHHHHHHHhhhcccCccchHHHHHHHHHHhhcCCc---hhchHHHHHHHHHhhcCCCChhHHhhhhhc
Q 000737 972 ---VSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGG---FDSLLEQMVEALCRHVSDESPTVRGLCLRG 1045 (1322)
Q Consensus 972 ---l~~~~~~~~~~il~~l~~~l~s~~~~~Ri~a~aflsEll~~~~~---~~~ll~~~~~~L~~~l~D~~~~VR~lalrG 1045 (1322)
+.+++|...--......-++++..|.+|.+|+.+-+.+..+-.. ...-...+...|.....||.|.|+..|..+
T Consensus 446 c~~L~~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~a 525 (533)
T KOG2032|consen 446 CIQLNHIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKA 525 (533)
T ss_pred HHHHhhhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHH
Confidence 33444444444445556788999999999988776665544221 112224577788888999999999999999
Q ss_pred ccCCC
Q 000737 1046 LVQIP 1050 (1322)
Q Consensus 1046 Lg~l~ 1050 (1322)
++.+.
T Consensus 526 l~~l~ 530 (533)
T KOG2032|consen 526 LDLLS 530 (533)
T ss_pred hhhHh
Confidence 87653
No 11
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.70 E-value=1.5e-06 Score=109.09 Aligned_cols=310 Identities=18% Similarity=0.215 Sum_probs=207.3
Q ss_pred chhhHHHhHHHHHHHHhhhCChhHHHHHHHHHhhhcccCccchHHHHHHHHHHhhcCCchhchHHHHHHHHHhhcCCCCh
Q 000737 957 DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESP 1036 (1322)
Q Consensus 957 ~~~~~~~GV~lLar~l~~~~~~~~~~il~~l~~~l~s~~~~~Ri~a~aflsEll~~~~~~~~ll~~~~~~L~~~l~D~~~ 1036 (1322)
+...-.+++..|...+.. +..+...+-.++.++.+.+...|..+-.+++.+....++ ..--+++.+.+-+.|+||
T Consensus 19 ~~~~~~~~l~kli~~~~~--G~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~---~~~l~~n~l~kdl~~~n~ 93 (526)
T PF01602_consen 19 DISKKKEALKKLIYLMML--GYDISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPE---LLILIINSLQKDLNSPNP 93 (526)
T ss_dssp HHHHHHHHHHHHHHHHHT--T---GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHH---HHHHHHHHHHHHHCSSSH
T ss_pred CHHHHHHHHHHHHHHHHc--CCCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchh---HHHHHHHHHHHhhcCCCH
Confidence 455666777766665544 334567777888999999999999999999998886544 222268899999999999
Q ss_pred hHHhhhhhcccCCCchhHhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCCh
Q 000737 1037 TVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNV 1116 (1322)
Q Consensus 1037 ~VR~lalrGLg~l~~~~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~ 1116 (1322)
.+|.+|||.|++++..++ .+.+++.+...+.|.++.|+..|+.++.++... +++.+... +...+..++.|.++
T Consensus 94 ~~~~lAL~~l~~i~~~~~---~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~-~p~~~~~~---~~~~l~~lL~d~~~ 166 (526)
T PF01602_consen 94 YIRGLALRTLSNIRTPEM---AEPLIPDVIKLLSDPSPYVRKKAALALLKIYRK-DPDLVEDE---LIPKLKQLLSDKDP 166 (526)
T ss_dssp HHHHHHHHHHHHH-SHHH---HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-CHCCHHGG---HHHHHHHHTTHSSH
T ss_pred HHHHHHHhhhhhhcccch---hhHHHHHHHHHhcCCchHHHHHHHHHHHHHhcc-CHHHHHHH---HHHHHhhhccCCcc
Confidence 999999999999997554 567899999999999999999999999999976 33333332 45667788899999
Q ss_pred hHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHHhccCCChhHHHHHHHHHHhhcchhhh-h-----hhhhhcccc
Q 000737 1117 KMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-G-----VYGIFNSHC 1190 (1322)
Q Consensus 1117 ~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~~-~-----l~~lf~~~~ 1190 (1322)
.|+.+|+.++..+ +. .......+..++...|..++ .+.+|-+...+-..|...++.-.. . +..+....
T Consensus 167 ~V~~~a~~~l~~i-~~-~~~~~~~~~~~~~~~L~~~l---~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l- 240 (526)
T PF01602_consen 167 SVVSAALSLLSEI-KC-NDDSYKSLIPKLIRILCQLL---SDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLL- 240 (526)
T ss_dssp HHHHHHHHHHHHH-HC-THHHHTTHHHHHHHHHHHHH---TCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHH-
T ss_pred hhHHHHHHHHHHH-cc-CcchhhhhHHHHHHHhhhcc---cccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHh-
Confidence 9999999999999 21 01110133333333333333 788888888888888877764333 2 11111110
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhCcc--hHHHHHHHHHhhhcCCChhhHHHHHHHHHHhcccCchhhhhhccHHHHHHHH
Q 000737 1191 FNSDHRSDYETFVRDLTRQFVQHFPS--RIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLL 1268 (1322)
Q Consensus 1191 ~~~~~~l~~~~f~~~~~k~L~~~~~~--~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L 1268 (1322)
. ......+-+.++.+..-.+. .+...+.....++.|+.+++|-.|..-+..+....++.- . ..... +
T Consensus 241 -~----s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v-~--~~~~~---~ 309 (526)
T PF01602_consen 241 -Q----SSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAV-F--NQSLI---L 309 (526)
T ss_dssp -H----HHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHH-G--THHHH---H
T ss_pred -h----ccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhh-h--hhhhh---h
Confidence 0 11133444555555543333 356677778889999999999998888777776542211 1 11111 2
Q ss_pred HHHhccCCChHHHHHHHHHHHHHHHHhc
Q 000737 1269 VVKLSQSADAIVRATCSSSLGWLLKSIN 1296 (1322)
Q Consensus 1269 ~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~ 1296 (1322)
.- ++.|+|+.||..|.+.|..+....|
T Consensus 310 ~~-l~~~~d~~Ir~~~l~lL~~l~~~~n 336 (526)
T PF01602_consen 310 FF-LLYDDDPSIRKKALDLLYKLANESN 336 (526)
T ss_dssp HH-HHCSSSHHHHHHHHHHHHHH--HHH
T ss_pred he-ecCCCChhHHHHHHHHHhhcccccc
Confidence 12 4558888888888777776665444
No 12
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=3.2e-06 Score=102.15 Aligned_cols=306 Identities=18% Similarity=0.189 Sum_probs=206.2
Q ss_pred HHHHHHHHhhhcccCccchHHHHHHHHHHhhcCCchhchHHHHHHHHHhhcCCCChhHHh-hhhhcc----cCCCchhHh
Q 000737 981 QTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRG-LCLRGL----VQIPSIHIH 1055 (1322)
Q Consensus 981 ~~il~~l~~~l~s~~~~~Ri~a~aflsEll~~~~~~~~ll~~~~~~L~~~l~D~~~~VR~-lalrGL----g~l~~~~v~ 1055 (1322)
-.+...+...++++....|.-|.--+.-++++......--..++..|.+...|-++.-|. .++.+. ++++ ....
T Consensus 133 ~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg-~~~E 211 (569)
T KOG1242|consen 133 EYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG-PPFE 211 (569)
T ss_pred HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC-CCCC
Confidence 344455556666777788888887788888876543333344788999999998776655 333322 2333 2334
Q ss_pred hhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccCC
Q 000737 1056 QYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVG 1135 (1322)
Q Consensus 1056 ~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~ 1135 (1322)
.|.-.++|.++..+.|.+..|+-.|+.+...++..++..++..+++++.. .++++ ...-+.+|+.++|.++...
T Consensus 212 Pyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~---~l~~~-kWrtK~aslellg~m~~~a-- 285 (569)
T KOG1242|consen 212 PYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLG---SLLEA-KWRTKMASLELLGAMADCA-- 285 (569)
T ss_pred chHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHH---HHHHH-hhhhHHHHHHHHHHHHHhc--
Confidence 57777899999999999999999999999999999999999988887755 33444 7788899999999887622
Q ss_pred cchHhHHHHHHHhHHHHHH-hccCCChhHHHHHHHHHHhhcchhhh-hhhhhhcccc--CCCCCCCCh-HHHHHHHH-HH
Q 000737 1136 SQREAFLEQIHAMLPRLIL-HIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNSHC--FNSDHRSDY-ETFVRDLT-RQ 1209 (1322)
Q Consensus 1136 ~~~~~~~eqv~~~LvpLLl-HL~D~~~~V~~ack~tL~~~a~~L~~-~l~~lf~~~~--~~~~~~l~~-~~f~~~~~-k~ 1209 (1322)
..-.+.-+..++|-+- -|.|..+.|++++..|+.+.+....- .+.....+.. +++- ..| ++-+..+. +.
T Consensus 286 ---p~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp--~~~~~e~~~~L~~tt 360 (569)
T KOG1242|consen 286 ---PKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADP--SCYTPECLDSLGATT 360 (569)
T ss_pred ---hHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCc--ccchHHHHHhhccee
Confidence 2223444556666665 89999999999999999999987776 4443333220 1111 101 11111100 00
Q ss_pred HHHh-CcchHHHHHHHHHhhhcCCChhhHHHHHHHHHHhcccCchhhhhhccHHHHHHHHHHHhccCCChHHHHHHHHHH
Q 000737 1210 FVQH-FPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSL 1288 (1322)
Q Consensus 1210 L~~~-~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL 1288 (1322)
++.. -+..+...+--.-.-+..-...+++.++..+|.+....++...-......+++.|.. -..||+|.||..|+.||
T Consensus 361 FV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~-~~~d~~PEvR~vaarAL 439 (569)
T KOG1242|consen 361 FVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKE-NLDDAVPEVRAVAARAL 439 (569)
T ss_pred eeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHH-HhcCCChhHHHHHHHHH
Confidence 0000 011111111112223444455678889999999998887666656678889999998 79999999999999999
Q ss_pred HHHHHHhcccc
Q 000737 1289 GWLLKSINSHS 1299 (1322)
Q Consensus 1289 ~~l~k~~~~~~ 1299 (1322)
|.+.|.-....
T Consensus 440 ~~l~e~~g~~~ 450 (569)
T KOG1242|consen 440 GALLERLGEVS 450 (569)
T ss_pred HHHHHHHHhhc
Confidence 99887665544
No 13
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.51 E-value=4.2e-06 Score=104.94 Aligned_cols=311 Identities=19% Similarity=0.161 Sum_probs=207.5
Q ss_pred HHHHHHHHhhhCChhHHHHHHHHHhhhcccCccchHHHHHHHHHHhhcCCchhchHHHHHHHHHhhcCCCChhHHhhhhh
Q 000737 965 IGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLR 1044 (1322)
Q Consensus 965 V~lLar~l~~~~~~~~~~il~~l~~~l~s~~~~~Ri~a~aflsEll~~~~~~~~ll~~~~~~L~~~l~D~~~~VR~lalr 1044 (1322)
+.+.+..+...++..+.-+.+.+.+-++++++.-|..|.-+++.+.. ....+.+.+.+.+.+.|++|.||+-|+-
T Consensus 62 ~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~-----~~~~~~l~~~v~~ll~~~~~~VRk~A~~ 136 (526)
T PF01602_consen 62 GYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIRT-----PEMAEPLIPDVIKLLSDPSPYVRKKAAL 136 (526)
T ss_dssp HHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S-----HHHHHHHHHHHHHHHHSSSHHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc-----cchhhHHHHHHHHHhcCCchHHHHHHHH
Confidence 34434555566666678889999999999999999999999988652 3555778888899999999999999999
Q ss_pred cccCCCchhHhhhHhH-HHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCChhHHHHHH
Q 000737 1045 GLVQIPSIHIHQYATQ-VLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAF 1123 (1322)
Q Consensus 1045 GLg~l~~~~v~~~~~~-lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi 1123 (1322)
++..+...... ..+. +++.+...|.|.|..|+..|+..+..+ ...++....++..+..++...+.+.++-++...+
T Consensus 137 ~l~~i~~~~p~-~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il 213 (526)
T PF01602_consen 137 ALLKIYRKDPD-LVEDELIPKLKQLLSDKDPSVVSAALSLLSEI--KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKIL 213 (526)
T ss_dssp HHHHHHHHCHC-CHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH--HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred HHHHHhccCHH-HHHHHHHHHHhhhccCCcchhHHHHHHHHHHH--ccCcchhhhhHHHHHHHhhhcccccchHHHHHHH
Confidence 99988641111 1112 688888888999999999999999999 2223332366777777777777899999999999
Q ss_pred HHHHHHhhccCCcchHhHHHHHHHhHHHHHHhccCCChhHHHHHHHHHHhhcchhh-h-hhhhhhccccCCCCCCCChHH
Q 000737 1124 AAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFME-I-GVYGIFNSHCFNSDHRSDYET 1201 (1322)
Q Consensus 1124 ~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~-~-~l~~lf~~~~~~~~~~l~~~~ 1201 (1322)
.+++.++.. ....+-...+. .++.-.++..++.|+-.|-.++..+.+.-. + ..-..+.+.....+..+.|
T Consensus 214 ~~l~~~~~~---~~~~~~~~~~i---~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~s~~~nvr~-- 285 (526)
T PF01602_consen 214 RLLRRYAPM---EPEDADKNRII---EPLLNLLQSSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLSSSDPNVRY-- 285 (526)
T ss_dssp HHHTTSTSS---SHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHTSSSHHHHH--
T ss_pred HHHHhcccC---ChhhhhHHHHH---HHHHHHhhccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhhcccchheh--
Confidence 999987752 22222112333 333334557888999999999988777655 2 2222233321111212333
Q ss_pred HHHHHHHHHHHhCcchHHHHHHHHHhhhc-CCChhhHHHHHHHHHHhcccCchhhhhhccHHHHHHHHHHHhccCCChHH
Q 000737 1202 FVRDLTRQFVQHFPSRIDSYMGSTIQAFE-APWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIV 1280 (1322)
Q Consensus 1202 f~~~~~k~L~~~~~~~~~~~l~~~l~ylk-S~~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~V 1280 (1322)
+.-+....+.+.++..+. ...-.+.+++ ++...||..|.-.+..+... +. .+.++..|...+..=+|+.+
T Consensus 286 ~~L~~L~~l~~~~~~~v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~---~n-----~~~Il~eL~~~l~~~~d~~~ 356 (526)
T PF01602_consen 286 IALDSLSQLAQSNPPAVF-NQSLILFFLLYDDDPSIRKKALDLLYKLANE---SN-----VKEILDELLKYLSELSDPDF 356 (526)
T ss_dssp HHHHHHHHHCCHCHHHHG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--H---HH-----HHHHHHHHHHHHHHC--HHH
T ss_pred hHHHHHHHhhcccchhhh-hhhhhhheecCCCChhHHHHHHHHHhhcccc---cc-----hhhHHHHHHHHHHhccchhh
Confidence 333445555666655555 4444456777 88899999998777766532 22 45577777774323348889
Q ss_pred HHHHHHHHHHHH-HHhccccc
Q 000737 1281 RATCSSSLGWLL-KSINSHSW 1300 (1322)
Q Consensus 1281 R~~Aa~aL~~l~-k~~~~~~~ 1300 (1322)
|..+..+++.+. ++.....|
T Consensus 357 ~~~~i~~I~~la~~~~~~~~~ 377 (526)
T PF01602_consen 357 RRELIKAIGDLAEKFPPDAEW 377 (526)
T ss_dssp HHHHHHHHHHHHHHHGSSHHH
T ss_pred hhhHHHHHHHHHhccCchHHH
Confidence 999999999887 44443334
No 14
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=7.9e-05 Score=91.28 Aligned_cols=157 Identities=18% Similarity=0.202 Sum_probs=118.4
Q ss_pred hHHHHHHHHHhhhcccCccchHHHHHHHHHHhhcCCc-h-hchHHHHHHHHHhhcCCCChhHHhhhhhcccCCCc---hh
Q 000737 979 EVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGG-F-DSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS---IH 1053 (1322)
Q Consensus 979 ~~~~il~~l~~~l~s~~~~~Ri~a~aflsEll~~~~~-~-~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~---~~ 1053 (1322)
.+++++.++-..+++++=++|-+|+..|+-.+.+|.. . .......++.+.+...||+-.||..+.-.+|.+++ +.
T Consensus 361 Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~ 440 (859)
T KOG1241|consen 361 IVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEA 440 (859)
T ss_pred chhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhh
Confidence 6788999999899999999999999999888888754 2 23345578888888899999999999999998875 22
Q ss_pred H--hhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccch--------hhHHhHHHHhcccccc---CChhHHH
Q 000737 1054 I--HQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVE--------PILLNLSVRLRNLQVS---MNVKMRR 1120 (1322)
Q Consensus 1054 v--~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~--------~~l~~l~~~lrpffed---e~~~vR~ 1120 (1322)
+ ..+-+.++++++.||.| .+.|.-.++.++-.+.+...+...+ |++..|...|-.-=+- ....+|.
T Consensus 441 ~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~ 519 (859)
T KOG1241|consen 441 IINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRS 519 (859)
T ss_pred cccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHH
Confidence 1 24667889999999987 5778888888887777443333222 4666666555332222 4467999
Q ss_pred HHHHHHHHHhhccCCc
Q 000737 1121 NAFAAFGALSNFGVGS 1136 (1322)
Q Consensus 1121 aAi~lfG~L~~~~~~~ 1136 (1322)
+|++++|.+.+++...
T Consensus 520 AAYeALmElIk~st~~ 535 (859)
T KOG1241|consen 520 AAYEALMELIKNSTDD 535 (859)
T ss_pred HHHHHHHHHHHcCcHH
Confidence 9999999999976543
No 15
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.47 E-value=1.1e-05 Score=97.00 Aligned_cols=206 Identities=11% Similarity=-0.021 Sum_probs=142.6
Q ss_pred HHHHHhhcCCCChhHHhhhhhcccCCCchhHhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhH
Q 000737 1024 VEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNL 1103 (1322)
Q Consensus 1024 ~~~L~~~l~D~~~~VR~lalrGLg~l~~~~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l 1103 (1322)
+..|.+.+.|+++.||.-+.++||.+.. +...+.++..|.+.+..|...++.+++.... . ..
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~-------~~a~~~L~~~L~~~~p~vR~aal~al~~r~~----~-~~------ 149 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGG-------RQAEPWLEPLLAASEPPGRAIGLAALGAHRH----D-PG------ 149 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCc-------hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc----C-hH------
Confidence 6788889999999999999999999986 3457778888888888898888877776321 1 11
Q ss_pred HHHhccccccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHHhccCCChhHHHHHHHHHHhhcchhhh-hh
Q 000737 1104 SVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GV 1182 (1322)
Q Consensus 1104 ~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~~-~l 1182 (1322)
..+.++++|+++.||..|+..+|.+... . .+..|...+.|+++.||.++..++..++.--.| .+
T Consensus 150 -~~L~~~L~d~d~~Vra~A~raLG~l~~~---~-----------a~~~L~~al~d~~~~VR~aA~~al~~lG~~~A~~~l 214 (410)
T TIGR02270 150 -PALEAALTHEDALVRAAALRALGELPRR---L-----------SESTLRLYLRDSDPEVRFAALEAGLLAGSRLAWGVC 214 (410)
T ss_pred -HHHHHHhcCCCHHHHHHHHHHHHhhccc---c-----------chHHHHHHHcCCCHHHHHHHHHHHHHcCCHhHHHHH
Confidence 2345678899999999999999998751 1 223344568999999999999999988875445 33
Q ss_pred hhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhhHHHHHHHHHHhcccCchhhhhhccHH
Q 000737 1183 YGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYT 1262 (1322)
Q Consensus 1183 ~~lf~~~~~~~~~~l~~~~f~~~~~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e 1262 (1322)
...... .| .. ....+...+..--.+ ..+......++++. +|.+|+..+|.+.. .
T Consensus 215 ~~~~~~----~g-~~----~~~~l~~~lal~~~~---~a~~~L~~ll~d~~--vr~~a~~AlG~lg~------------p 268 (410)
T TIGR02270 215 RRFQVL----EG-GP----HRQRLLVLLAVAGGP---DAQAWLRELLQAAA--TRREALRAVGLVGD------------V 268 (410)
T ss_pred HHHHhc----cC-cc----HHHHHHHHHHhCCch---hHHHHHHHHhcChh--hHHHHHHHHHHcCC------------c
Confidence 332222 12 11 111222333222222 33444445677765 99999999997752 3
Q ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHHH
Q 000737 1263 QVFGLLVVKLSQSADAIVRATCSSSLGWL 1291 (1322)
Q Consensus 1263 ~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l 1291 (1322)
.....|+. +..|+. +|+.|.+|+..+
T Consensus 269 ~av~~L~~-~l~d~~--~aR~A~eA~~~I 294 (410)
T TIGR02270 269 EAAPWCLE-AMREPP--WARLAGEAFSLI 294 (410)
T ss_pred chHHHHHH-HhcCcH--HHHHHHHHHHHh
Confidence 34566777 455554 999999996654
No 16
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.45 E-value=5.6e-06 Score=113.13 Aligned_cols=269 Identities=13% Similarity=0.110 Sum_probs=193.5
Q ss_pred HHHHHhhhcccCccchHHHHHHHHHHhhcCCc-hhchHHH-HHHHHHhhcCCCChhHHhhhhhcccCCCc--hhHhhhH-
Q 000737 984 CLILTKSINRQQRFQREAAAAALSEFVRYSGG-FDSLLEQ-MVEALCRHVSDESPTVRGLCLRGLVQIPS--IHIHQYA- 1058 (1322)
Q Consensus 984 l~~l~~~l~s~~~~~Ri~a~aflsEll~~~~~-~~~ll~~-~~~~L~~~l~D~~~~VR~lalrGLg~l~~--~~v~~~~- 1058 (1322)
+..|+.+|.++++..+..|+..++-+-.+... .....+. .++.|.+-+..+++.+|.-|.-.|+|++. ++.+...
T Consensus 448 Ip~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~ 527 (2102)
T PLN03200 448 VQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVE 527 (2102)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 45566777777777777777777666543322 1122222 77888888999999999999999999985 3333323
Q ss_pred -hHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccCCcc
Q 000737 1059 -TQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQ 1137 (1322)
Q Consensus 1059 -~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~ 1137 (1322)
..+++.+++.|.+.+..+...|..+|.+++..-+.+.+ .++..++..+++.++..++..+|.+...+.+.
T Consensus 528 ~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I--------~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~- 598 (2102)
T PLN03200 528 SAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATI--------SQLTALLLGDLPESKVHVLDVLGHVLSVASLE- 598 (2102)
T ss_pred HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHH--------HHHHHHhcCCChhHHHHHHHHHHHHHhhcchh-
Confidence 35789999999998899999999999999876555433 22345688899999999999999998854322
Q ss_pred hHhHHHHH---HHhHHHHHHhccCCChhHHHHHHHHHHhhcchhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhC
Q 000737 1138 REAFLEQI---HAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHF 1214 (1322)
Q Consensus 1138 ~~~~~eqv---~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~~~l~~lf~~~~~~~~~~l~~~~f~~~~~k~L~~~~ 1214 (1322)
.+..+. .+++.+|.--++.+++.+.+.+..++..++.- + .+.|..++...
T Consensus 599 --d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~-----------~--------------~d~~~avv~ag 651 (2102)
T PLN03200 599 --DLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSS-----------R--------------QDLCESLATDE 651 (2102)
T ss_pred --HHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-----------C--------------hHHHHHHHHcC
Confidence 233332 35666666677778899999998888876641 0 01122222111
Q ss_pred cchHHHHHHHHHhhhcCCChhhHHHHHHHHHHhcccCchhhhhhccHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHH
Q 000737 1215 PSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKS 1294 (1322)
Q Consensus 1215 ~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~ 1294 (1322)
-+-.++..+++...++|+.|++-+|.+......++...+-...+++.|.+ |++++|..|+..|+.||+.+.+.
T Consensus 652 ------aIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~-LL~~~d~~v~e~Al~ALanLl~~ 724 (2102)
T PLN03200 652 ------IINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIK-LAKSSSIEVAEQAVCALANLLSD 724 (2102)
T ss_pred ------CHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHH-HHhCCChHHHHHHHHHHHHHHcC
Confidence 13345667888999999999999999997666555443333457888999 89999999999999999999865
Q ss_pred h
Q 000737 1295 I 1295 (1322)
Q Consensus 1295 ~ 1295 (1322)
.
T Consensus 725 ~ 725 (2102)
T PLN03200 725 P 725 (2102)
T ss_pred c
Confidence 4
No 17
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.42 E-value=0.018 Score=72.64 Aligned_cols=542 Identities=18% Similarity=0.173 Sum_probs=304.2
Q ss_pred HHhhcCChhHHHHHHHHHHHhccCCC-hhhHHHHHHHHHHHHhhccCccccccHHHHHHHHHHHhh--hcCcHHHHHHHH
Q 000737 730 SVCILLTKDELVATLHSCTTAICDRT-KQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAV--HITDKHLRLETL 806 (1322)
Q Consensus 730 ~i~~~L~~~el~~li~~ll~~L~d~~-~~~~~~A~~~L~~~l~~~g~~L~e~~V~eI~~~i~~~L~--~i~~~~~r~~~l 806 (1322)
.++-..+.+-+..++..++++|..+- ....+.-.++|..+....|.++... .+.|+-.+..-.+ .-...+.|+..+
T Consensus 200 ~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h-~~~ivp~v~~y~~~~e~~dDELrE~~l 278 (1233)
T KOG1824|consen 200 HLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSH-LDKIVPLVADYCNKIEEDDDELREYCL 278 (1233)
T ss_pred HHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcc-cchhhHHHHHHhcccccCcHHHHHHHH
Confidence 45667888889999999999998763 3344778889999999999999544 7777666654443 445788999999
Q ss_pred HHHHHHHhhcCCCc-ccch------hhhhhcCcchhhhHhhhcCCCcchhhhhcCCCCCCCCCCC-CCCcccchHHHHHH
Q 000737 807 GAISCLAENTNSKI-VFNE------VLATAGKDIVTKDISRLRGGWPMQDAFHGDMEKGDYSSHS-ADTWIDDDILQAAI 878 (1322)
Q Consensus 807 ~aI~lLa~~h~~~l-p~d~------w~al~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~laA~ 878 (1322)
+|+-++....++++ |+-. -..+.-||-...+.+ . + .- .-++++.+..+..+.- ...++.--+--||.
T Consensus 279 Qale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~--e-D-ed-~~~~ed~eDde~~deYsDDeD~SWkVRRaAa 353 (1233)
T KOG1824|consen 279 QALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTE--E-D-ED-AMFLEDEEDDEQDDEYSDDEDMSWKVRRAAA 353 (1233)
T ss_pred HHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCc--c-c-hh-hhhhhccccchhccccccccchhHHHHHHHH
Confidence 99999998876553 3222 011111211111110 0 0 00 0011111111110110 11112112222444
Q ss_pred HHHHHHHhcCCcchHHHHHHhhHH----------------------HHHHHHHHhhhhccCCCC-----CCCCh------
Q 000737 879 LALTAFFRGGGKVGKKAVEKSYAP----------------------VLAALTLQLGSCHGLASS-----GQHEP------ 925 (1322)
Q Consensus 879 ~aL~Ell~~~~~~~~~~v~~~fp~----------------------Lf~aLL~ql~~~~~l~~~-----~~~~P------ 925 (1322)
-++--++... .+-+..+|.. .+.+|+.|..-+.+.-.. ..-.|
T Consensus 354 Kcl~a~IsSR----~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L 429 (1233)
T KOG1824|consen 354 KCLEAVISSR----LEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSML 429 (1233)
T ss_pred HHHHHHHhcc----HHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHH
Confidence 4444444322 1222222222 235566666655554211 00111
Q ss_pred ---HHHHHHHHHHHHHH------hCcHHHHHHHHh-c-CCC---------------C----chhhHHHhHHHHHHHHhhh
Q 000737 926 ---LRAILTSFQAFCEC------VGDLEMRKILAR-D-GEQ---------------N----DKEKWINLIGDVAGCVSIK 975 (1322)
Q Consensus 926 ---~~~aleAlk~ll~~------~g~~~~~~~Le~-~-~~w---------------~----~~~~~~~GV~lLar~l~~~ 975 (1322)
....+.|+.-.+.. .|+-.+...+-. . |+. . +...-.+...-|-.++..+
T Consensus 430 ~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~ 509 (1233)
T KOG1824|consen 430 SDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISH 509 (1233)
T ss_pred HhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcC
Confidence 23445555555543 122211111110 0 100 0 2222334444455677777
Q ss_pred CChhHHHHHHHHHhhh-ccc-CccchHHHHHHH--HHHhh-----cC---CchhchHHHHHHHHHhhc--CCCChhHHhh
Q 000737 976 RPKEVQTICLILTKSI-NRQ-QRFQREAAAAAL--SEFVR-----YS---GGFDSLLEQMVEALCRHV--SDESPTVRGL 1041 (1322)
Q Consensus 976 ~~~~~~~il~~l~~~l-~s~-~~~~Ri~a~afl--sEll~-----~~---~~~~~ll~~~~~~L~~~l--~D~~~~VR~l 1041 (1322)
.|+.+++....+.|-+ .+. ++.+.++|=|.+ .+|++ .+ .+......++.+.-.+.+ +|.+..||.-
T Consensus 510 ~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVker 589 (1233)
T KOG1824|consen 510 PPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKER 589 (1233)
T ss_pred ChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHH
Confidence 8877777777776543 333 344555554444 34544 12 123345566666666665 7889999999
Q ss_pred hhhcccCCCc---hhHhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCChhH
Q 000737 1042 CLRGLVQIPS---IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKM 1118 (1322)
Q Consensus 1042 alrGLg~l~~---~~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~v 1118 (1322)
|+-.+|.+-. +-....-+.+|+.+++-|. ++.-++.|..+|+.|...--.-+..+.+-++...+..|.-+-....
T Consensus 590 aIscmgq~i~~fgD~l~~eL~~~L~il~eRl~--nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~l 667 (1233)
T KOG1824|consen 590 AISCMGQIIANFGDFLGNELPRTLPILLERLG--NEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRAL 667 (1233)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh--chhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHH
Confidence 9888886632 4445556778888888886 6778899999999999876666778888888888899999989999
Q ss_pred HHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHHhccCCChhHHHH---HHHHHHhhc--chhhh---hhhhh---hc
Q 000737 1119 RRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQA---CRNTLKQVA--PFMEI---GVYGI---FN 1187 (1322)
Q Consensus 1119 R~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~a---ck~tL~~~a--~~L~~---~l~~l---f~ 1187 (1322)
|.+...++-.|.+.-.++......+-++.-++||+- +.+..|.+- +-.|+...- .+++. .+.++ ++
T Consensus 668 r~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lis---esdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~ 744 (1233)
T KOG1824|consen 668 RLATLTALDKLVKNYSDSIPAELLEAVLVELPPLIS---ESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLR 744 (1233)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhh---HHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhh
Confidence 999999999999854445555566677777777763 233333321 212211110 01110 00000 01
Q ss_pred cccCCC-----------------CCCCChHH-----------------------HHHHHHHHHHHhCcchHHHHHHHHHh
Q 000737 1188 SHCFNS-----------------DHRSDYET-----------------------FVRDLTRQFVQHFPSRIDSYMGSTIQ 1227 (1322)
Q Consensus 1188 ~~~~~~-----------------~~~l~~~~-----------------------f~~~~~k~L~~~~~~~~~~~l~~~l~ 1227 (1322)
...++- ..+++|.. .+......|...+|++........+.
T Consensus 745 Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~ 824 (1233)
T KOG1824|consen 745 SPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQ 824 (1233)
T ss_pred CccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHH
Confidence 100000 01122211 12233455667788776667777777
Q ss_pred hhcCCCh--hhHHHHHHHHHHhcccCchhhhhhccHHHHHHHHHHHhccCCChHHHHHHHHHHHHHH
Q 000737 1228 AFEAPWP--IIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1292 (1322)
Q Consensus 1228 ylkS~~~--~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1292 (1322)
-++||.. .||--|.+-+|.+..+.+..-. ..+....++ -...|...|+.+|+.|||.+.
T Consensus 825 ~~~s~~s~~~ikvfa~LslGElgr~~~~s~~-----~e~~~~iie-af~sp~edvksAAs~ALGsl~ 885 (1233)
T KOG1824|consen 825 DLQSPKSSDSIKVFALLSLGELGRRKDLSPQ-----NELKDTIIE-AFNSPSEDVKSAASYALGSLA 885 (1233)
T ss_pred HHhCCCCchhHHHHHHhhhhhhccCCCCCcc-----hhhHHHHHH-HcCCChHHHHHHHHHHhhhhh
Confidence 7776664 4888899999999876542211 222233444 466799999999999999764
No 18
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.35 E-value=0.00035 Score=88.92 Aligned_cols=291 Identities=15% Similarity=0.127 Sum_probs=205.6
Q ss_pred hhhcccCccchHHHHH---HHHHHhhcCCchhchHHHHHHHHHhhcCCCChhHHhhhhhcccCCCc-hhHhhhHhHHHHH
Q 000737 989 KSINRQQRFQREAAAA---ALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS-IHIHQYATQVLSV 1064 (1322)
Q Consensus 989 ~~l~s~~~~~Ri~a~a---flsEll~~~~~~~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~-~~v~~~~~~lL~a 1064 (1322)
-.++.++...|.+++. -|.++++.+.-.......+++.+..-..|+++.||.+...+..++.+ -...+-.+.++|.
T Consensus 362 ~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~ 441 (759)
T KOG0211|consen 362 NLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPL 441 (759)
T ss_pred HHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChh
Confidence 3444556666665543 34445553222334445567888888999999999998888887765 1122234567899
Q ss_pred HHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccCCcchHhHHHH
Q 000737 1065 ILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQ 1144 (1322)
Q Consensus 1065 ll~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eq 1144 (1322)
.+..+.|.+..|+......++.+....+..++..+.-++...|..+-+|-...+|.+.+..+=.++. ..| ..|.++
T Consensus 442 ~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~-q~~---~~~~~~ 517 (759)
T KOG0211|consen 442 LIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLAL-QLG---VEFFDE 517 (759)
T ss_pred hhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHH-hhh---hHHhhH
Confidence 9999999888899999988888888888888888888888888888888899999999999888876 111 233333
Q ss_pred HHHhHHHHHH-hccCCChhHHHHHHHHHHhhcchhh--h-hhhhhhccccCCCCC-CCChHHHHHHHHHHHHHhCcch--
Q 000737 1145 IHAMLPRLIL-HIYDDDLSVRQACRNTLKQVAPFME--I-GVYGIFNSHCFNSDH-RSDYETFVRDLTRQFVQHFPSR-- 1217 (1322)
Q Consensus 1145 v~~~LvpLLl-HL~D~~~~V~~ack~tL~~~a~~L~--~-~l~~lf~~~~~~~~~-~l~~~~f~~~~~k~L~~~~~~~-- 1217 (1322)
- +.+++. -+.|-.-++|.+|...|...+..+| | .......... .+++ ++-++.-.-+-+..+..-+...
T Consensus 518 ~---~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~-~~~q~~y~~R~t~l~si~~la~v~g~ei~ 593 (759)
T KOG0211|consen 518 K---LAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLA-MDLQDNYLVRMTTLFSIHELAEVLGQEIT 593 (759)
T ss_pred H---HHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHH-HhcCcccchhhHHHHHHHHHHHHhccHHH
Confidence 3 444444 5778889999999999999999999 8 4443333221 1221 1333322223333444444332
Q ss_pred HHHHHHHHHhhhcCCChhhHHHHHHHHHHhcccCchhhhhhccHHHHHHHHHHHhccCCChHHHHHHHHHHHHHH
Q 000737 1218 IDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1292 (1322)
Q Consensus 1218 ~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1292 (1322)
...++--.....++|-++||-+|+.++=-++..+....+ .+.+.++++. |.+|+|..||-+|..|.+.+.
T Consensus 594 ~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~----~~~v~pll~~-L~~d~~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 594 CEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVR----DEEVLPLLET-LSSDQELDVRYRAILAFGSIE 663 (759)
T ss_pred HHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHH----HHHHHHHHHH-hccCcccchhHHHHHHHHHHH
Confidence 233555666788999999999999999888887765443 5788899988 899999999999999998876
No 19
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.34 E-value=0.0085 Score=73.48 Aligned_cols=614 Identities=14% Similarity=0.154 Sum_probs=336.5
Q ss_pred HHHHHHHHhcCh--hHHHhhHHHHHHHHHHHHHHhhhhcccccCCCCCCccchhhhhhhhhccCCCCCCcccCCchhhhh
Q 000737 569 ILRQIDQYVSSP--VEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALC 646 (1322)
Q Consensus 569 il~~l~pwl~S~--~~~eR~RA~~~~~~lL~~f~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ps~f~~~~~~f~~ 646 (1322)
+|+++.|.+-|. .++||+-.+..+.++|-+.=+... +.
T Consensus 399 lfnqiLpllMs~tLeDqerhllVkvidriLyklDdlvr----------------------------------------pY 438 (1172)
T KOG0213|consen 399 LFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVR----------------------------------------PY 438 (1172)
T ss_pred HHHHHHHHHcCccccchhhhhHHHHHHHHHHhhcccch----------------------------------------hc
Confidence 677788877544 568999999999998874432110 12
Q ss_pred hhhHHHHhhccccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCcchhhhhhhhhchHHHHHHhhcCCCCChhHHHHH
Q 000737 647 LGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSEVFNR 726 (1322)
Q Consensus 647 lG~Lvg~l~prC~D~~~~ir~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~~~~~~~~ 726 (1322)
.-+.+--..|.-.|++.-.|-.-.|.|.-|-+-+ .+ +++.. ... ..+++..+.. .+.-.+
T Consensus 439 VhkILvViepllided~yar~egreIisnLakaa-Gl----a~mis-tmr---pDidn~deYV-----------Rnttar 498 (1172)
T KOG0213|consen 439 VHKILVVIEPLLIDEDYYARVEGREIISNLAKAA-GL----ATMIS-TMR---PDIDNKDEYV-----------RNTTAR 498 (1172)
T ss_pred eeeeEEEeecceecchHHHhhchHHHHHHHHHHh-hh----HHHHH-hhc---CCcccccHHH-----------HHHHHH
Confidence 2333445678889999999999988888665432 11 11110 000 0011111110 111124
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHhhccCccccccHHHHHHHHHHHhhhcCcHHHHHHHH
Q 000737 727 IVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETL 806 (1322)
Q Consensus 727 i~~~i~~~L~~~el~~li~~ll~~L~d~~~~~~~~A~~~L~~~l~~~g~~L~e~~V~eI~~~i~~~L~~i~~~~~r~~~l 806 (1322)
...+|+..|--.++..|+..+-.+=.+- +.......+...+-..-|-..-.. +.-+++ |..+.-.-.+.-+|..+-
T Consensus 499 afavvasalgip~llpfLkavc~SkkSw--qaRhTgIkivqqIail~Gcsvlph-l~~lv~-ii~~gl~De~qkVR~itA 574 (1172)
T KOG0213|consen 499 AFAVVASALGIPALLPFLKAVCGSKKSW--QARHTGIKIVQQIAILSGCSVLPH-LKPLVK-IIEHGLKDEQQKVRTITA 574 (1172)
T ss_pred HHHHHHHHhCcHHHHHHHHHHhccccch--hhhchhhHHHHHHHHHhcchhhhh-hHHHHH-HHHHhhcccchhhhhHHH
Confidence 5556778888889888776654443322 223334445555544445433122 333333 334444456666888888
Q ss_pred HHHHHHHhhcCCCc---ccch-----hhhhhcCcchhhhHhhhcCCCcchhhhhcCCCCCCCCCCCCCCcccchHH-HHH
Q 000737 807 GAISCLAENTNSKI---VFNE-----VLATAGKDIVTKDISRLRGGWPMQDAFHGDMEKGDYSSHSADTWIDDDIL-QAA 877 (1322)
Q Consensus 807 ~aI~lLa~~h~~~l---p~d~-----w~al~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-laA 877 (1322)
.+++.||... .|. .||+ |+..-... .+-+. .|.++. ..-+++ ..+..+.+-. -++
T Consensus 575 lalsalaeaa-~Pygie~fDsVlkpLwkgir~hr--gk~la------afLkAi-----gylipl--md~eya~yyTrevm 638 (1172)
T KOG0213|consen 575 LALSALAEAA-TPYGIEQFDSVLKPLWKGIRQHR--GKELA------AFLKAI-----GYLIPL--MDAEYASYYTREVM 638 (1172)
T ss_pred HHHHHHHHhc-CCcchHHHHHHHHHHHHHHHHcc--ChHHH------HHHHHH-----hhcccc--ccHHHHHHhHHHHH
Confidence 8899999875 232 2555 66321110 11110 111110 000000 0111122222 233
Q ss_pred HHHHHHHHhcCCcchHHHHHHhhHHHHHHHHHHhhhhccCCCC--------------------CCCChHHHHHHHHHHHH
Q 000737 878 ILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASS--------------------GQHEPLRAILTSFQAFC 937 (1322)
Q Consensus 878 ~~aL~Ell~~~~~~~~~~v~~~fp~Lf~aLL~ql~~~~~l~~~--------------------~~~~P~~~aleAlk~ll 937 (1322)
.-.+.| +..|+++.++.|..+|.+... ..|+.+. ++-.-.++.+++--.+.
T Consensus 639 lil~rE-f~sPDeemkkivLKVv~qcc~--------t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia 709 (1172)
T KOG0213|consen 639 LILIRE-FGSPDEEMKKIVLKVVKQCCA--------TDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIA 709 (1172)
T ss_pred HHHHHh-hCCChHHHHHHHHHHHHHHhc--------ccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHH
Confidence 444444 667888999999888876542 2222111 11111355666666677
Q ss_pred HHhCcHHHHHHHHhcCCCCchhhHHHhHHHHHHHHhhhCCh----------hHHHHHHHHHhhhcccCccchHHHHHHHH
Q 000737 938 ECVGDLEMRKILARDGEQNDKEKWINLIGDVAGCVSIKRPK----------EVQTICLILTKSINRQQRFQREAAAAALS 1007 (1322)
Q Consensus 938 ~~~g~~~~~~~Le~~~~w~~~~~~~~GV~lLar~l~~~~~~----------~~~~il~~l~~~l~s~~~~~Ri~a~afls 1007 (1322)
..+|+.+....+-.+ --++++.|..-+...+.-++-..+. .+..|+..+ +.+.-..- +-..-|+
T Consensus 710 ~KvG~~~~v~R~v~~-lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Af----qeqtt~d~-vml~gfg 783 (1172)
T KOG0213|consen 710 AKVGSDPIVSRVVLD-LKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAF----QEQTTEDS-VMLLGFG 783 (1172)
T ss_pred HHhCchHHHHHHhhh-hccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHH----Hhcccchh-hhhhhHH
Confidence 777888776544432 1125677777665555444433331 233333332 22222221 1111222
Q ss_pred HHhhcCCc-hhchHHHHHHHHHhhcCCCChhHHhhhhhcccCCCc-hhH---hhhHhHHHHHHHhhcccCChHHHHHHHH
Q 000737 1008 EFVRYSGG-FDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS-IHI---HQYATQVLSVILALLDDLDESVQLTAVS 1082 (1322)
Q Consensus 1008 Ell~~~~~-~~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~-~~v---~~~~~~lL~all~~L~d~d~~V~leam~ 1082 (1322)
-..+.-.. ..-.+-+++.....+|++++|.||.-|+.-+|.++. -+. .+.-..+=..+++.|+...++|.-.-+.
T Consensus 784 ~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILg 863 (1172)
T KOG0213|consen 784 TVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILG 863 (1172)
T ss_pred HHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHH
Confidence 22221111 122334577788889999999999999999998875 111 1122223345677887777777666666
Q ss_pred HHHHHhccCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHHhccCCChh
Q 000737 1083 CLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLS 1162 (1322)
Q Consensus 1083 ~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~ 1162 (1322)
++..|.+..+-...-+=.-.|..+|.|-+.+-..+|.+..|.+.|.++..+ ..+-+-+| -++.-.-|+--|+--+.+
T Consensus 864 AikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~Iadrg--pE~v~aRE-WMRIcfeLlelLkahkK~ 940 (1172)
T KOG0213|consen 864 AIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRG--PEYVSARE-WMRICFELLELLKAHKKE 940 (1172)
T ss_pred HHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcC--cccCCHHH-HHHHHHHHHHHHHHHHHH
Confidence 666666666555555555678888899999999999999999999999743 22322222 122223344455566889
Q ss_pred HHHHHHHHHHhhcchhhh--hhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcc---hHHHHHHHHHhhhcCCChhhH
Q 000737 1163 VRQACRNTLKQVAPFMEI--GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPS---RIDSYMGSTIQAFEAPWPIIQ 1237 (1322)
Q Consensus 1163 V~~ack~tL~~~a~~L~~--~l~~lf~~~~~~~~~~l~~~~f~~~~~k~L~~~~~~---~~~~~l~~~l~ylkS~~~~IR 1237 (1322)
+|.++-.||+-+|...|. .+..++++.-.++- .+..|..+.-.--. .--..+-..+.=..-|..+++
T Consensus 941 iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeR--------q~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQ 1012 (1172)
T KOG0213|consen 941 IRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQER--------QNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQ 1012 (1172)
T ss_pred HHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHH--------HhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHH
Confidence 999999999999999999 55777766422221 22223222110000 011123344445566777777
Q ss_pred HHHHHHHHHhcccCchhhhhhccHHHHHHHHHHHhccCCChHHHHHHHHHHHHH
Q 000737 1238 ANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWL 1291 (1322)
Q Consensus 1238 ~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l 1291 (1322)
..--.-+.++..+...... .+.=-+.+.|.+ -+-|.|++=|..|+.++..+
T Consensus 1013 nGVLkalsf~Feyigemsk--dYiyav~PlleD-AlmDrD~vhRqta~~~I~Hl 1063 (1172)
T KOG0213|consen 1013 NGVLKALSFMFEYIGEMSK--DYIYAVTPLLED-ALMDRDLVHRQTAMNVIKHL 1063 (1172)
T ss_pred HhHHHHHHHHHHHHHHHhh--hHHHHhhHHHHH-hhccccHHHHHHHHHHHHHH
Confidence 7655555555433221111 122335566777 68899999999998877654
No 20
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=2.2e-05 Score=94.34 Aligned_cols=274 Identities=19% Similarity=0.260 Sum_probs=199.1
Q ss_pred HHHHHHHHHhhhcccCccchHHHHHHHHHHhhcCCc-hhchHHHHHHHHHhhcCCCChhHHhhhhhcccCCCc---hhHh
Q 000737 980 VQTICLILTKSINRQQRFQREAAAAALSEFVRYSGG-FDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS---IHIH 1055 (1322)
Q Consensus 980 ~~~il~~l~~~l~s~~~~~Ri~a~aflsEll~~~~~-~~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~---~~v~ 1055 (1322)
+..++..+..+.+++.+.-|.-|++.+-.++-.... .-.-+++.+..|-...+|++|.||+-..|++.-+.+ +++-
T Consensus 172 l~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~ 251 (885)
T KOG2023|consen 172 LNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLV 251 (885)
T ss_pred hHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcc
Confidence 345555666777888999999898887666543322 123457778888888899999999999999997754 7777
Q ss_pred hhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCC-cccchhhHHhHHHHhcc----------ccc------------
Q 000737 1056 QYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSS-KDAVEPILLNLSVRLRN----------LQV------------ 1112 (1322)
Q Consensus 1056 ~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~-~~~~~~~l~~l~~~lrp----------ffe------------ 1112 (1322)
.+-..++.-++..-+|.|++|.+||+.=...+-+.-- ...+.|++.+|+.-|.. +++
T Consensus 252 phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDre 331 (885)
T KOG2023|consen 252 PHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDRE 331 (885)
T ss_pred cchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchh
Confidence 8888999999999999999999999998887765432 34466777777665521 111
Q ss_pred --------------------------cCC--------hhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHH-hcc
Q 000737 1113 --------------------------SMN--------VKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLIL-HIY 1157 (1322)
Q Consensus 1113 --------------------------de~--------~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLl-HL~ 1157 (1322)
||. ..+|.-+..+++-|++ .|.++++..+.|++- ||.
T Consensus 332 eDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLan--------vf~~elL~~l~PlLk~~L~ 403 (885)
T KOG2023|consen 332 EDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLAN--------VFGDELLPILLPLLKEHLS 403 (885)
T ss_pred hhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHH--------hhHHHHHHHHHHHHHHHcC
Confidence 110 3488888888888877 377889999999997 999
Q ss_pred CCChhHHHHHHHHHHhhcchhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhhH
Q 000737 1158 DDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQ 1237 (1322)
Q Consensus 1158 D~~~~V~~ack~tL~~~a~~L~~~l~~lf~~~~~~~~~~l~~~~f~~~~~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR 1237 (1322)
.++--|+.+.-.|||.+|- | +++ .+..+.|+.+..+ +..+.+.|+-||
T Consensus 404 ~~~W~vrEagvLAlGAIAE-----------------G-cM~----------g~~p~LpeLip~l----~~~L~DKkplVR 451 (885)
T KOG2023|consen 404 SEEWKVREAGVLALGAIAE-----------------G-CMQ----------GFVPHLPELIPFL----LSLLDDKKPLVR 451 (885)
T ss_pred cchhhhhhhhHHHHHHHHH-----------------H-Hhh----------hcccchHHHHHHH----HHHhccCcccee
Confidence 9999999999999999873 3 222 2233344443333 446889999999
Q ss_pred HHHHHHHHHhcccCchhhhhhccHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHh
Q 000737 1238 ANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSI 1295 (1322)
Q Consensus 1238 ~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~ 1295 (1322)
.-.+|-++...+..-.++. +....-+...|.. .+-|..-.|+.+|-.|...+-+..
T Consensus 452 sITCWTLsRys~wv~~~~~-~~~f~pvL~~ll~-~llD~NK~VQEAAcsAfAtleE~A 507 (885)
T KOG2023|consen 452 SITCWTLSRYSKWVVQDSR-DEYFKPVLEGLLR-RLLDSNKKVQEAACSAFATLEEEA 507 (885)
T ss_pred eeeeeeHhhhhhhHhcCCh-HhhhHHHHHHHHH-HHhcccHHHHHHHHHHHHHHHHhc
Confidence 9999998888765543332 1122334444544 455999999999999988776543
No 21
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.17 E-value=0.00075 Score=84.15 Aligned_cols=299 Identities=20% Similarity=0.219 Sum_probs=190.7
Q ss_pred HHhhhcccCccchHHHHHHHHHHhhcCCchhchHHHHHHHHHhhcCCCChhHHhhhhhcccCCCchh---Hh-hhHhHHH
Q 000737 987 LTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIH---IH-QYATQVL 1062 (1322)
Q Consensus 987 l~~~l~s~~~~~Ri~a~aflsEll~~~~~~~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~~~---v~-~~~~~lL 1062 (1322)
+...+++.+..+=..+..++..++... ....+.......|..++.+|++.||.++++.++++..+. +. -....++
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~-~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~ 121 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSAL-SPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELL 121 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHH
Confidence 444445443333333344566666642 223446778899999999999999999999999987521 11 1225689
Q ss_pred HHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhh-HHhHHHHhccccccCChhHHHHHHHHHHHHhhccCCcchHhH
Q 000737 1063 SVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPI-LLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAF 1141 (1322)
Q Consensus 1063 ~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~-l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~~~~ 1141 (1322)
+.++..+.|.|..|...|+.+|.++...- .+...+ -.++...|..++...++.+|.-...++..+++.. .+.+
T Consensus 122 ~~i~~~L~~~d~~Va~~A~~~L~~l~~~~--~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S----~~~~ 195 (503)
T PF10508_consen 122 PLIIQCLRDPDLSVAKAAIKALKKLASHP--EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHS----PEAA 195 (503)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHhCCc--hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcC----HHHH
Confidence 99999999999999999999999999753 233222 1223667788888889999999999999998732 2233
Q ss_pred HHHHHHhHHHHHH-hccCCChhHHHHHHHHHHhhcch------hh-h----hhhhhhccccCCC-CCCCChHH---HHHH
Q 000737 1142 LEQIHAMLPRLIL-HIYDDDLSVRQACRNTLKQVAPF------ME-I----GVYGIFNSHCFNS-DHRSDYET---FVRD 1205 (1322)
Q Consensus 1142 ~eqv~~~LvpLLl-HL~D~~~~V~~ack~tL~~~a~~------L~-~----~l~~lf~~~~~~~-~~~l~~~~---f~~~ 1205 (1322)
..-+-..+.+.++ -+.++|.-|+..|-..|..+|.. |. . ++..++....-.. ...+...- |...
T Consensus 196 ~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~ 275 (503)
T PF10508_consen 196 EAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGN 275 (503)
T ss_pred HHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHH
Confidence 2222234666666 68888889999999999888752 11 1 1222222211111 11111122 3323
Q ss_pred HHHHHHHhCcchHHHHHHHHHhhhcCCChhhHHHHHHHHHHhcccCchhhhh-h---ccHHHHHHHHHHHhccCCChHHH
Q 000737 1206 LTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHIL-S---LFYTQVFGLLVVKLSQSADAIVR 1281 (1322)
Q Consensus 1206 ~~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~~~~~~-~---~~~e~l~~~L~~~Ll~Dpdp~VR 1281 (1322)
+...--....+.+..|+......+.|..+.++..|.--+|.+.....-...- . ...+.++.+.-. ..+.....+|
T Consensus 276 la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~-~~~~~~~~lk 354 (503)
T PF10508_consen 276 LARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGD-AIKSGSTELK 354 (503)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHH-HhcCCchHHH
Confidence 2221011112233456666677899999999999999999987544322211 1 123445555555 4666888999
Q ss_pred HHHHHHHHHHHH
Q 000737 1282 ATCSSSLGWLLK 1293 (1322)
Q Consensus 1282 ~~Aa~aL~~l~k 1293 (1322)
.++-.|++.+..
T Consensus 355 ~r~l~al~~il~ 366 (503)
T PF10508_consen 355 LRALHALASILT 366 (503)
T ss_pred HHHHHHHHHHHh
Confidence 999999999974
No 22
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.003 Score=76.73 Aligned_cols=579 Identities=15% Similarity=0.138 Sum_probs=321.9
Q ss_pred hhhhhHHHHhhccccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCcchhhhhhhhhchHHHHHHhhcCCCCC---hh
Q 000737 645 LCLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASID---PS 721 (1322)
Q Consensus 645 ~~lG~Lvg~l~prC~D~~~~ir~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~---~~ 721 (1322)
..+|..=......-+|+++-||-..--.|..+... .|... | .+-+..+-+. +.+..... .-
T Consensus 86 ~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~-------~~~~~-----w-pelLp~L~~~---L~s~d~n~~EgA~ 149 (885)
T KOG2023|consen 86 EVLDYIKSECLHGLGDASPLIRATVGIVITTIAST-------GGLQH-----W-PELLPQLCEL---LDSPDYNTCEGAF 149 (885)
T ss_pred HHHHHHHHHHHhhccCchHHHHhhhhheeeeeecc-------ccccc-----c-hhHHHHHHHH---hcCCcccccchhH
Confidence 35566666667777899998886654444433222 11111 1 0123333222 22210000 01
Q ss_pred HHHHHHHHHHhhcCCh----hHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHhhccCccccccHHHHHHHHHHHhhhcC
Q 000737 722 EVFNRIVSSVCILLTK----DELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHIT 797 (1322)
Q Consensus 722 ~~~~~i~~~i~~~L~~----~el~~li~~ll~~L~d~~~~~~~~A~~~L~~~l~~~g~~L~e~~V~eI~~~i~~~L~~i~ 797 (1322)
.-+++|+...++.|.. .-+.-++-..++=...+++..+.-|..-+|+++-.+...+--. +..-++.++. +..-.
T Consensus 150 ~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~-iD~Fle~lFa-lanD~ 227 (885)
T KOG2023|consen 150 GALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVH-IDKFLEILFA-LANDE 227 (885)
T ss_pred HHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHH-HHHHHHHHHH-HccCC
Confidence 1123555554444444 3444555556666677777777778778899987777666322 5555555554 44677
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCcccchhhhhhcCcchhhhHhhhcCCCcchhhhhcCCCCCCCCCCCCCCcccchHHHHH
Q 000737 798 DKHLRLETLGAISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHGDMEKGDYSSHSADTWIDDDILQAA 877 (1322)
Q Consensus 798 ~~~~r~~~l~aI~lLa~~h~~~lp~d~w~al~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~laA 877 (1322)
.++||+.+=+|+..|..-++.++. |++..-++-+ ++. .+ .. ..-+.+-|
T Consensus 228 ~~eVRk~vC~alv~Llevr~dkl~----------phl~~IveyM----------L~~--tq-------d~--dE~VALEA 276 (885)
T KOG2023|consen 228 DPEVRKNVCRALVFLLEVRPDKLV----------PHLDNIVEYM----------LQR--TQ-------DV--DENVALEA 276 (885)
T ss_pred CHHHHHHHHHHHHHHHHhcHHhcc----------cchHHHHHHH----------HHH--cc-------Cc--chhHHHHH
Confidence 899999999999999988744331 1111111110 000 00 00 11133333
Q ss_pred HHHHHHHHhcCCcchHHHHHHhhHHHHHHHHHHhhhhccC----CCC----------CCCChHHHHHHHHHHHHHHhCcH
Q 000737 878 ILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGL----ASS----------GQHEPLRAILTSFQAFCECVGDL 943 (1322)
Q Consensus 878 ~~aL~Ell~~~~~~~~~~v~~~fp~Lf~aLL~ql~~~~~l----~~~----------~~~~P~~~aleAlk~ll~~~g~~ 943 (1322)
-.-...+-..+ .++..+..+.++|.-.|+-...|+=.- +.. ++..| |..-.-. ...|..
T Consensus 277 CEFwla~aeqp--i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkP-Rfhksk~----~~~~~~ 349 (885)
T KOG2023|consen 277 CEFWLALAEQP--ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKP-RFHKSKE----HGNGED 349 (885)
T ss_pred HHHHHHHhcCc--CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccc-hhhhchh----ccCccc
Confidence 33333333445 788899999999998888777764321 100 12334 2211100 011111
Q ss_pred H----HH-HHHHh---cCCCCchhhHHHhHHHHHHHHhhhCChhHHHHHHHHHhhhcccCccchHHHHHHHHHHhhcCCc
Q 000737 944 E----MR-KILAR---DGEQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGG 1015 (1322)
Q Consensus 944 ~----~~-~~Le~---~~~w~~~~~~~~GV~lLar~l~~~~~~~~~~il~~l~~~l~s~~~~~Ri~a~aflsEll~~~~~ 1015 (1322)
+ .+ ...+- .++|+=-..--.++..||... ....++-++-.+...|.+.+=..|-+++.+++..-.+|..
T Consensus 350 ~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf---~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~ 426 (885)
T KOG2023|consen 350 ADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVF---GDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQ 426 (885)
T ss_pred cccccccccccccccccccccHhhccHHHHHHHHHhh---HHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhh
Confidence 1 00 11111 124661111112233355533 2235566666666777776667777887777776666543
Q ss_pred -hhchHHHHHHHHHhhcCCCChhHHhhhhhcccCCCc----hhHhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhcc
Q 000737 1016 -FDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS----IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKS 1090 (1322)
Q Consensus 1016 -~~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~----~~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~ 1090 (1322)
--..+-.+++.|.+-+.|-.|.||.+..=-|++.+. +.-.+|...+|..++..+-|.+..|.-.|+.++..+-+.
T Consensus 427 g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~ 506 (885)
T KOG2023|consen 427 GFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEE 506 (885)
T ss_pred hcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 112223588999999999999999999888887765 455588888999999999999999999999999999887
Q ss_pred CCcccchhhHHhHHHHhccccccCC---hhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHH---hccCCChhHH
Q 000737 1091 SSKDAVEPILLNLSVRLRNLQVSMN---VKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLIL---HIYDDDLSVR 1164 (1322)
Q Consensus 1091 l~~~~~~~~l~~l~~~lrpffede~---~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLl---HL~D~~~~V~ 1164 (1322)
.+. .+.||+-.|..++--.|.+-. -.+=.-||+.|.+-+. ..-.+..|.+- .++||+- -|.|+++++-
T Consensus 507 A~~-eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg--~~Ln~~~Yiqi---LmPPLi~KW~~lsd~DKdLf 580 (885)
T KOG2023|consen 507 AGE-ELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVG--HALNKPAYIQI---LMPPLIEKWELLSDSDKDLF 580 (885)
T ss_pred ccc-hhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHH--HhcCcHHHHHH---hccHHHHHHHhcCcccchHH
Confidence 764 456788888777766665543 3344455555544332 22334444443 3456654 6788887743
Q ss_pred ----------HH--------HHHHHHhhcchhhhhhhhhhccccCCCCC--CCChHHHHHHHHHHHHHhCcchHHHHHHH
Q 000737 1165 ----------QA--------CRNTLKQVAPFMEIGVYGIFNSHCFNSDH--RSDYETFVRDLTRQFVQHFPSRIDSYMGS 1224 (1322)
Q Consensus 1165 ----------~a--------ck~tL~~~a~~L~~~l~~lf~~~~~~~~~--~l~~~~f~~~~~k~L~~~~~~~~~~~l~~ 1224 (1322)
+| |..++.||..++.--+..+...+.=..+. .-+|-..-.|+..-|.+-.++.+..++.+
T Consensus 581 PLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~ 660 (885)
T KOG2023|consen 581 PLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQ 660 (885)
T ss_pred HHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhh
Confidence 32 44556677766663222222221100110 01110011244455555555555555544
Q ss_pred ------HHhhhcCCChhhHHHHHHHHHHhcccCchhhhhhccHHHHHHHHHHHhccCCC-hHHHHHHHHHHHHHH
Q 000737 1225 ------TIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSAD-AIVRATCSSSLGWLL 1292 (1322)
Q Consensus 1225 ------~l~ylkS~~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpd-p~VR~~Aa~aL~~l~ 1292 (1322)
.+.-++++-|+||+.|--++|-+.+..++.-.. ..+..+..+.. .-||+ -+|...|.-|+|.+.
T Consensus 661 snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p--~~~~fl~~lg~--Nl~~~~isv~nNA~WAiGeia 731 (885)
T KOG2023|consen 661 SNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIP--NLADFLPILGA--NLNPENISVCNNAIWAIGEIA 731 (885)
T ss_pred ccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccc--hHHHHHHHHhh--cCChhhchHHHHHHHHHHHHH
Confidence 456789999999999999999887654322221 22333333321 22333 356667777777765
No 23
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.11 E-value=0.019 Score=69.21 Aligned_cols=611 Identities=15% Similarity=0.140 Sum_probs=328.9
Q ss_pred HHHHHHHHh--cChhHHHhhHHHHHHHHHHHHHHhhhhcccccCCCCCCccchhhhhhhhhccCCCCCCcccCCchhhhh
Q 000737 569 ILRQIDQYV--SSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALC 646 (1322)
Q Consensus 569 il~~l~pwl--~S~~~~eR~RA~~~~~~lL~~f~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ps~f~~~~~~f~~ 646 (1322)
+|+.+.|-+ .+-.++||+..+..+.++|-..-+.++ +.
T Consensus 204 vfnkvLp~lm~r~LeDqerhl~vk~idr~Ly~lddl~~----------------------------------------py 243 (975)
T COG5181 204 VFNKVLPMLMSRELEDQERHLVVKLIDRLLYGLDDLKV----------------------------------------PY 243 (975)
T ss_pred HHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHhcccccc----------------------------------------cc
Confidence 455555554 455678999999999999874422111 12
Q ss_pred hhhHHHHhhccccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCcchhhhhhhhhchHHHHHHhhcCCCCChhHHHHH
Q 000737 647 LGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSEVFNR 726 (1322)
Q Consensus 647 lG~Lvg~l~prC~D~~~~ir~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~~~~~~~~ 726 (1322)
.-+.+--.+|.-.|++.-.|-...|.|..|-+- ..+ +++... .. ..+.+-.+. ..++-.+
T Consensus 244 vhkILvVv~pllided~~~r~~g~eii~nL~~~-~Gl----~~~vs~-mr---pDi~~~deY-----------VRnvt~r 303 (975)
T COG5181 244 VHKILVVVGPLLIDEDLKRRCMGREIILNLVYR-CGL----GFSVSS-MR---PDITSKDEY-----------VRNVTGR 303 (975)
T ss_pred eeeEEEEeeccccCccHHHhcccHHHHHHHHHH-hcc----ceeeee-cc---CCcccccHH-----------HHHHHHH
Confidence 233344567888999999999999988777654 222 222210 00 001110100 0122235
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHhhccCccccccHHHHHHHHHHHhhhcCcHHHHHHHH
Q 000737 727 IVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETL 806 (1322)
Q Consensus 727 i~~~i~~~L~~~el~~li~~ll~~L~d~~~~~~~~A~~~L~~~l~~~g~~L~e~~V~eI~~~i~~~L~~i~~~~~r~~~l 806 (1322)
.+.++++.|-..|+..|+..+-.+=++- ........+...+-..-|-..-.. +.-+++-|-+ +-.-.+.-+|..+-
T Consensus 304 a~~vva~algv~~llpfl~a~c~SrkSw--~aRhTgiri~qqI~~llG~s~l~h-l~~l~~ci~~-~l~D~~~~vRi~tA 379 (975)
T COG5181 304 AVGVVADALGVEELLPFLEALCGSRKSW--EARHTGIRIAQQICELLGRSRLSH-LGPLLKCISK-LLKDRSRFVRIDTA 379 (975)
T ss_pred HHHHHHHhhCcHHHHHHHHHHhcCccch--hhhchhhHHHHHHHHHhCccHHhh-hhhHHHHHHH-HhhccceeeeehhH
Confidence 6778899999999988876654433322 222334445555555555433122 4444444433 33344555788888
Q ss_pred HHHHHHHhhcCCCc---ccch-----hhhhhcCc-chhhhHhhhcC-CCcchhhhhcCCCCCCCCCCCCCCcccchHHHH
Q 000737 807 GAISCLAENTNSKI---VFNE-----VLATAGKD-IVTKDISRLRG-GWPMQDAFHGDMEKGDYSSHSADTWIDDDILQA 876 (1322)
Q Consensus 807 ~aI~lLa~~h~~~l---p~d~-----w~al~~~~-~~~~~l~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 876 (1322)
.+++.||... .|. .||+ |+...... .......+-.| -.|+-+ |.-+..-.--
T Consensus 380 ~alS~lae~~-~Pygie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~-----------------peYa~h~tre 441 (975)
T COG5181 380 NALSYLAELV-GPYGIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMS-----------------PEYACHDTRE 441 (975)
T ss_pred hHHHHHHHhc-CCcchHHHHHHHHHHHHHHHhcCCchHHHHHHHhccccccCC-----------------hHhhhhhHHH
Confidence 8899998876 232 2454 65321111 00000000000 011110 0011111223
Q ss_pred HHHHHHHHHhcCCcchHHHHH-------------------HhhHHHHHHHHHH-hhh------------hccCCCC----
Q 000737 877 AILALTAFFRGGGKVGKKAVE-------------------KSYAPVLAALTLQ-LGS------------CHGLASS---- 920 (1322)
Q Consensus 877 A~~aL~Ell~~~~~~~~~~v~-------------------~~fp~Lf~aLL~q-l~~------------~~~l~~~---- 920 (1322)
++..+.-.|..++++.++.+. +.-|.+|..+--+ .+. .+-....
T Consensus 442 ~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~ 521 (975)
T COG5181 442 HMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPR 521 (975)
T ss_pred HHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCChH
Confidence 344444445555555555443 2334444333222 110 0000000
Q ss_pred ----------CCCChHH-HHHHHHHHHHHHhCcHHHHHHHHhcCCCCchhhHHHhHHH------------------HHHH
Q 000737 921 ----------GQHEPLR-AILTSFQAFCECVGDLEMRKILARDGEQNDKEKWINLIGD------------------VAGC 971 (1322)
Q Consensus 921 ----------~~~~P~~-~aleAlk~ll~~~g~~~~~~~Le~~~~w~~~~~~~~GV~l------------------Lar~ 971 (1322)
.+..|.| .+..+.--.+.+.|--+..+.++ +.+++||.- +.-+
T Consensus 522 v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErle--------erl~d~il~Afqeq~~t~~~il~~f~tv~vs 593 (975)
T COG5181 522 VSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLE--------ERLYDSILNAFQEQDTTVGLILPCFSTVLVS 593 (975)
T ss_pred HHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHH--------HHHHHHHHHHHHhccccccEEEecccceeee
Confidence 1233433 23333333334433333333333 444444421 0011
Q ss_pred HhhhCChhHHHHHHHHHhhhcccCccchHHHH---HHHHHHhhcCCchhchHHHHHHHHHhhcCCCChhHHhhhhhcccC
Q 000737 972 VSIKRPKEVQTICLILTKSINRQQRFQREAAA---AALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQ 1048 (1322)
Q Consensus 972 l~~~~~~~~~~il~~l~~~l~s~~~~~Ri~a~---aflsEll~~~~~~~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~ 1048 (1322)
+-...-|+.++|++.....|+++.+.-|+-|+ +.++-.|..|... ..+..+-++|.+.+....|.|-.--+.++-.
T Consensus 594 l~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~-~~l~klg~iLyE~lge~ypEvLgsil~Ai~~ 672 (975)
T COG5181 594 LEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGET-KELAKLGNILYENLGEDYPEVLGSILKAICS 672 (975)
T ss_pred hhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchH-HHHHHHhHHHHHhcCcccHHHHHHHHHHHHH
Confidence 11122368999999999999999999998774 5566667666553 4456678889999999999998877776665
Q ss_pred CCc----hhHhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCChhHHHHHHH
Q 000737 1049 IPS----IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFA 1124 (1322)
Q Consensus 1049 l~~----~~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~ 1124 (1322)
|-. .++..-...+||.+..-|......|+...+.-++.|.....+..-..--..||.-|-..+..-+-++|.+|..
T Consensus 673 I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~ 752 (975)
T COG5181 673 IYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATE 752 (975)
T ss_pred HhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhh
Confidence 543 3333345567888888888888899999999999998776554433445678888888888899999999999
Q ss_pred HHHHHhhccCCcchHhHHHHHHHhHHHHHHhccCCChhHHHHHHHHHHhhcchhhh--hhhhhhccccCCCCCCCChHHH
Q 000737 1125 AFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI--GVYGIFNSHCFNSDHRSDYETF 1202 (1322)
Q Consensus 1125 lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~~--~l~~lf~~~~~~~~~~l~~~~f 1202 (1322)
-||-+++.. |.. ..|.-|+-.|+-++-.-|.-..-|.+.+|..-|. .+..+...-. ..+-....+ .
T Consensus 753 tfG~Is~ai-GPq---------dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~-TPe~nVQnG-v 820 (975)
T COG5181 753 TFGCISRAI-GPQ---------DVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYE-TPEANVQNG-V 820 (975)
T ss_pred hhhhHHhhc-CHH---------HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhccc-CchhHHHHh-H
Confidence 999999843 332 3455566556555555554444455554444333 3333333210 001000000 2
Q ss_pred HHHHHH---HHHHhCcchHHHHHHHHHhhhcCCChhhHHHHHHHHHHhcccCchhhhhhccHHHHHHHHHHHhc----cC
Q 000737 1203 VRDLTR---QFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLS----QS 1275 (1322)
Q Consensus 1203 ~~~~~k---~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll----~D 1275 (1322)
++.+|- +..+...+++....--.-..+-+-.+.-|+.|+-.|-.+.-+-+ ..+.|++.=.|.. |+ -|
T Consensus 821 Lkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~-----gtg~eda~IHLlN-llwpNIle 894 (975)
T COG5181 821 LKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCP-----GTGDEDAAIHLLN-LLWPNILE 894 (975)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCC-----CcccHHHHHHHHH-HhhhhccC
Confidence 222222 22222222222211112225667788889999998888765422 1223433333434 33 37
Q ss_pred CChHHHHHHHHHH
Q 000737 1276 ADAIVRATCSSSL 1288 (1322)
Q Consensus 1276 pdp~VR~~Aa~aL 1288 (1322)
|.|-|...--+.+
T Consensus 895 ~sPhvi~~~~Eg~ 907 (975)
T COG5181 895 PSPHVIQSFDEGM 907 (975)
T ss_pred CCcHHHHHHHHHH
Confidence 8888887665554
No 24
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=0.1 Score=68.16 Aligned_cols=231 Identities=19% Similarity=0.225 Sum_probs=152.2
Q ss_pred cCCCChhHHhhhhhcccCCCc-----hhHhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhHHH
Q 000737 1031 VSDESPTVRGLCLRGLVQIPS-----IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSV 1105 (1322)
Q Consensus 1031 l~D~~~~VR~lalrGLg~l~~-----~~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~ 1105 (1322)
.+..++.|++=+-|=|+.+.. .-+.++...+-+.+.+++++....+...++.+|..|++.++.+....+.-.|..
T Consensus 663 e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~E 742 (1176)
T KOG1248|consen 663 ENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPE 742 (1176)
T ss_pred hccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 345588888887777765543 234566677888889999888899999999999999999987766666667777
Q ss_pred HhccccccCChhHHHHHHHHHHHHhh--ccCCcchHhHHHHHHHhHHHHHH-hccCCChhHHHHHHHHHHhhcchhhhhh
Q 000737 1106 RLRNLQVSMNVKMRRNAFAAFGALSN--FGVGSQREAFLEQIHAMLPRLIL-HIYDDDLSVRQACRNTLKQVAPFMEIGV 1182 (1322)
Q Consensus 1106 ~lrpffede~~~vR~aAi~lfG~L~~--~~~~~~~~~~~eqv~~~LvpLLl-HL~D~~~~V~~ack~tL~~~a~~L~~~l 1182 (1322)
-|... .+.+..-|..||.++=.+++ .......++ -+.+.+..++.+- -+--+ .-+..|.+ +-.+..
T Consensus 743 vIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~lnefl~~Isagl~gd--~~~~~as~-Ivai~~------ 811 (1176)
T KOG1248|consen 743 VILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEP-ASAILNEFLSIISAGLVGD--STRVVASD-IVAITH------ 811 (1176)
T ss_pred HHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccc-hHHHHHHHHHHHHhhhccc--HHHHHHHH-HHHHHH------
Confidence 77776 99999999999999877773 111111122 2223333333332 11122 22222222 222111
Q ss_pred hhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhhHHHHHHHHHHhcccCchhhhhhccHH
Q 000737 1183 YGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYT 1262 (1322)
Q Consensus 1183 ~~lf~~~~~~~~~~l~~~~f~~~~~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e 1262 (1322)
++.+. ... ++ -+.+..++.+...|+.|..+.|+.+|+-|+--++..+|...+ .-..+
T Consensus 812 --il~e~--~~~--ld----------------~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l-~~~~~ 868 (1176)
T KOG1248|consen 812 --ILQEF--KNI--LD----------------DETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECL-SPHLE 868 (1176)
T ss_pred --HHHHH--hcc--cc----------------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHH-hhhHH
Confidence 11110 000 10 123445677778899999999999999888888877765554 34457
Q ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhc
Q 000737 1263 QVFGLLVVKLSQSADAIVRATCSSSLGWLLKSIN 1296 (1322)
Q Consensus 1263 ~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~ 1296 (1322)
++...+.. |.+|--.-||.++-.=+..|.+.+.
T Consensus 869 ~LL~sll~-ls~d~k~~~r~Kvr~LlekLirkfg 901 (1176)
T KOG1248|consen 869 ELLPSLLA-LSHDHKIKVRKKVRLLLEKLIRKFG 901 (1176)
T ss_pred HHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHhC
Confidence 78888877 8999999999988887777775543
No 25
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=0.0013 Score=80.19 Aligned_cols=300 Identities=13% Similarity=0.105 Sum_probs=185.9
Q ss_pred CChhHHHHHHHHHhhhcccCccchHHHHHHHHHHhhcCCchhchHHHHHHHHHhhcCCCChhHHhhhhhcccCCCc---h
Q 000737 976 RPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS---I 1052 (1322)
Q Consensus 976 ~~~~~~~il~~l~~~l~s~~~~~Ri~a~aflsEll~~~~~~~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~---~ 1052 (1322)
.-|.+.+++..+.....+....-|-+|.-...-++++-... -.+.++..+...+.+..-.-...+++++|.++. .
T Consensus 210 ~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~--aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~ 287 (569)
T KOG1242|consen 210 FEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAY--AVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPK 287 (569)
T ss_pred CCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcc--hhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchH
Confidence 34688888888888887778888888777777766653221 112233344444444455566677888887654 6
Q ss_pred hHhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhcc-----------------------
Q 000737 1053 HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRN----------------------- 1109 (1322)
Q Consensus 1053 ~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrp----------------------- 1109 (1322)
.+....+.++|.+.+.|.|....|.-.+..+|.++....+..++.++.+.+...+.+
T Consensus 288 qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~ 367 (569)
T KOG1242|consen 288 QLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDA 367 (569)
T ss_pred HHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecc
Confidence 677888889999999999988888888888888888887777777777666555421
Q ss_pred ------------ccccCChhHHHHHHHHHHHHhhcc-CCcchHhHHHHHHHhHHHHHHhccCCChhHHHHHHHHHHhhcc
Q 000737 1110 ------------LQVSMNVKMRRNAFAAFGALSNFG-VGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAP 1176 (1322)
Q Consensus 1110 ------------ffede~~~vR~aAi~lfG~L~~~~-~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~ 1176 (1322)
=+.+-+..++..++..+|.+++-. +..+..+|..+++..+-. -+.|..|+||..+.+||+..-.
T Consensus 368 psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~---~~~d~~PEvR~vaarAL~~l~e 444 (569)
T KOG1242|consen 368 PSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKE---NLDDAVPEVRAVAARALGALLE 444 (569)
T ss_pred hhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHH---HhcCCChhHHHHHHHHHHHHHH
Confidence 122344557888888999998855 344556666665444433 4568889999999999865443
Q ss_pred hhhh--------hhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhh--cCCChhhHHHHHHHHHH
Q 000737 1177 FMEI--------GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAF--EAPWPIIQANAIYFSSS 1246 (1322)
Q Consensus 1177 ~L~~--------~l~~lf~~~~~~~~~~l~~~~f~~~~~k~L~~~~~~~~~~~l~~~l~yl--kS~~~~IR~aA~~fiG~ 1246 (1322)
=+|- .+.+....+. ...... .-..+++..+....-++....+...+.+- .-.|+.+|-.=++|+++
T Consensus 445 ~~g~~~f~d~~p~l~e~~~~~k-~~~~~~---g~aq~l~evl~~~~v~~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~ 520 (569)
T KOG1242|consen 445 RLGEVSFDDLIPELSETLTSEK-SLVDRS---GAAQDLSEVLAGLGVEKVEDILPEILANASSVLIDERIRDGVIWLFYL 520 (569)
T ss_pred HHHhhcccccccHHHHhhccch-hhhhhH---HHhhhHHHHHhcccchHHHHHHHHHHHHHhhccchhhhccCeeehhhc
Confidence 3332 1222211110 000011 12223333343333445555555544443 34556699888888876
Q ss_pred hcccCchhhhhhccHHHHHHHHHHHhccCCChHHHHHHHHH
Q 000737 1247 ILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSS 1287 (1322)
Q Consensus 1247 l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~a 1287 (1322)
+--....+. +...-+++..+.. -+-|.|+.+|..+.++
T Consensus 521 lp~~~~~~~--~~yi~~i~~~~~k-~~ad~de~~~~~~~~~ 558 (569)
T KOG1242|consen 521 LPYIFGFQF--QPYIHEILDEFLK-GLADNDEKGRDTALEA 558 (569)
T ss_pred cchhhhHHh--HHHHHHHHHHHHH-HhhhcCCccccchhhh
Confidence 643333333 2334455666655 3559999999888776
No 26
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=0.0033 Score=82.51 Aligned_cols=319 Identities=11% Similarity=0.113 Sum_probs=210.2
Q ss_pred HHHHHHHhCcHHHH-HHHHh---cCCCCchhhHHHhHHHHHHHHhhhCChhHHHHHHHHHhhhcccCccchHHHHHHHHH
Q 000737 933 FQAFCECVGDLEMR-KILAR---DGEQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSE 1008 (1322)
Q Consensus 933 lk~ll~~~g~~~~~-~~Le~---~~~w~~~~~~~~GV~lLar~l~~~~~~~~~~il~~l~~~l~s~~~~~Ri~a~aflsE 1008 (1322)
+-+|-.-.|.-++. ++|.. +.-|++..+.--|.+.++..=-+...|+++.+.--|+.|--.|+..-+-+-+-+---
T Consensus 945 Lc~LASdl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~ 1024 (1702)
T KOG0915|consen 945 LCNLASDLGQPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNA 1024 (1702)
T ss_pred HHHHHhhcCChHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHH
Confidence 33433445777765 67775 358997777777777666543344445666666666666444444444444444455
Q ss_pred HhhcCC-chhchHHHHHHHHHhhcCCCChhHHhhhhhcccCCC---c-hhHhhhHhHHHHHHHhhcccCChH---HHHHH
Q 000737 1009 FVRYSG-GFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIP---S-IHIHQYATQVLSVILALLDDLDES---VQLTA 1080 (1322)
Q Consensus 1009 ll~~~~-~~~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~---~-~~v~~~~~~lL~all~~L~d~d~~---V~lea 1080 (1322)
++..+. ........++.-|.-.+.+-.-.||..|.-+|..+- + +++....+.+..+++..+||--+. +.-.+
T Consensus 1025 Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~ 1104 (1702)
T KOG0915|consen 1025 LITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKA 1104 (1702)
T ss_pred hccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555432 223444557777888888999999999877777664 2 677788889999999999986554 44567
Q ss_pred HHHHHHHhccCCcccchhhHHhHHHHhccccccC-----ChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHHh
Q 000737 1081 VSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSM-----NVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILH 1155 (1322)
Q Consensus 1081 m~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede-----~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlH 1155 (1322)
..+|+++.-.+.+-+=+.-.-++.--+.||+=|+ =.+||..||...-+++++.++ .-.|+. .-|+|+++.
T Consensus 1105 ~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~-~lkP~~----~~LIp~ll~ 1179 (1702)
T KOG0915|consen 1105 ARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGK-ELKPHF----PKLIPLLLN 1179 (1702)
T ss_pred HHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchh-hhcchh----hHHHHHHHH
Confidence 7888888755544333333344455566777664 478999999999999997654 334432 345666665
Q ss_pred ccCC-ChhHH-----------HHHHH--------------HHHhhcchhhh-hhhhhhccc------cCCCCCCCChHHH
Q 000737 1156 IYDD-DLSVR-----------QACRN--------------TLKQVAPFMEI-GVYGIFNSH------CFNSDHRSDYETF 1202 (1322)
Q Consensus 1156 L~D~-~~~V~-----------~ack~--------------tL~~~a~~L~~-~l~~lf~~~------~~~~~~~l~~~~f 1202 (1322)
.-++ +|.|- +.+-+ |+..|-+.... .+.++..+. -.+-|-+.+...|
T Consensus 1180 ~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~f 1259 (1702)
T KOG0915|consen 1180 AYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASF 1259 (1702)
T ss_pred HccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHH
Confidence 5554 33432 22222 35556665555 444444321 0111223445779
Q ss_pred HHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhhHHHHHHHHHHhcccCchhhh
Q 000737 1203 VRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHI 1256 (1322)
Q Consensus 1203 ~~~~~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~~~~~ 1256 (1322)
+--+.+.+.++.....+-++..++.-+++-.+.+|++=+.-.|++.+...+++.
T Consensus 1260 I~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~ 1313 (1702)
T KOG0915|consen 1260 ISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQM 1313 (1702)
T ss_pred HHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHH
Confidence 888899999999999999999999999999999999999999999997766554
No 27
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=0.00015 Score=87.49 Aligned_cols=270 Identities=17% Similarity=0.154 Sum_probs=171.5
Q ss_pred HHhhhcccCccchHHHHHHHHHHhhcCCc-hhchHHH-HHHHHHhhcCCCCh--hHHhhhhhcccCCCc-----hhHhhh
Q 000737 987 LTKSINRQQRFQREAAAAALSEFVRYSGG-FDSLLEQ-MVEALCRHVSDESP--TVRGLCLRGLVQIPS-----IHIHQY 1057 (1322)
Q Consensus 987 l~~~l~s~~~~~Ri~a~aflsEll~~~~~-~~~ll~~-~~~~L~~~l~D~~~--~VR~lalrGLg~l~~-----~~v~~~ 1057 (1322)
++..++|+++.-|--|+=+++.....++. ...+++. ++..|+.-+..+++ .+|. +.-.|.|+.. .... .
T Consensus 157 fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn-~tW~LsNlcrgk~P~P~~~-~ 234 (514)
T KOG0166|consen 157 FIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRN-ATWTLSNLCRGKNPSPPFD-V 234 (514)
T ss_pred HHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHH-HHHHHHHHHcCCCCCCcHH-H
Confidence 34444555555555554444444443332 2233322 45555555555554 3333 2233333322 1111 2
Q ss_pred HhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccCCcc
Q 000737 1058 ATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQ 1137 (1322)
Q Consensus 1058 ~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~ 1137 (1322)
...+||++...++..|+.|...|+.+++-+.+.-.++.---+-..++.++-.++.+....++..|.++.|.++. |.+
T Consensus 235 v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvt---G~d 311 (514)
T KOG0166|consen 235 VAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVT---GSD 311 (514)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceee---ccH
Confidence 35689999999999999999999999999997765443223344678888999999999999999999999776 332
Q ss_pred hHhHHHHHH-HhHHHHHHhcc--CCChhHHHHHHHHHHhhcchhhh--hhhhhhccccCCCCCCCChHHHHHHHHHHHHH
Q 000737 1138 REAFLEQIH-AMLPRLILHIY--DDDLSVRQACRNTLKQVAPFMEI--GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQ 1212 (1322)
Q Consensus 1138 ~~~~~eqv~-~~LvpLLlHL~--D~~~~V~~ack~tL~~~a~~L~~--~l~~lf~~~~~~~~~~l~~~~f~~~~~k~L~~ 1212 (1322)
...+.|. ....|.+.++- -+...+++.|..|+..++. |. .+.++++..
T Consensus 312 --~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA--G~~~qiqaVida~----------------------- 364 (514)
T KOG0166|consen 312 --EQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA--GNQEQIQAVIDAN----------------------- 364 (514)
T ss_pred --HHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc--CCHHHHHHHHHcc-----------------------
Confidence 2223333 33355554333 3444588989899888775 33 344444331
Q ss_pred hCcchHHHHHHHHHhhhcCCChhhHHHHHHHHHHhcccCchhhhhhccHHHHHHHHHHHhccCCChHHHHHHHHHHHHHH
Q 000737 1213 HFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1292 (1322)
Q Consensus 1213 ~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1292 (1322)
++-..+.-+++..-++|+.|+|.|+-+...-+++++..+-..-+++.|.. |+.=+|+.+-..+..|++.+.
T Consensus 365 --------l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcd-lL~~~D~~ii~v~Ld~l~nil 435 (514)
T KOG0166|consen 365 --------LIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCD-LLTCPDVKIILVALDGLENIL 435 (514)
T ss_pred --------cHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhh-cccCCChHHHHHHHHHHHHHH
Confidence 12223445556668899999999998876656666655433338888999 778888888899999999998
Q ss_pred HHhcc
Q 000737 1293 KSINS 1297 (1322)
Q Consensus 1293 k~~~~ 1297 (1322)
|.-..
T Consensus 436 ~~~e~ 440 (514)
T KOG0166|consen 436 KVGEA 440 (514)
T ss_pred HHHHH
Confidence 76543
No 28
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.00012 Score=88.27 Aligned_cols=293 Identities=16% Similarity=0.150 Sum_probs=184.8
Q ss_pred HHHHHhhhcccCccchHHHHHHHHHHhhcC---CchhchHHHHHHHHHhhc-CCCChhHHhhhhhcccCCCc---hhHhh
Q 000737 984 CLILTKSINRQQRFQREAAAAALSEFVRYS---GGFDSLLEQMVEALCRHV-SDESPTVRGLCLRGLVQIPS---IHIHQ 1056 (1322)
Q Consensus 984 l~~l~~~l~s~~~~~Ri~a~aflsEll~~~---~~~~~ll~~~~~~L~~~l-~D~~~~VR~lalrGLg~l~~---~~v~~ 1056 (1322)
...+...+.|.+...+..|+..|-.++... +........+++.+.+.+ .+.+|.+|.-|.-+|.||+. ++-+.
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 444455566788888999999988888653 222222223777777777 48889999999999999987 22111
Q ss_pred -hHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHh--HHHHhccccccCC-hhHHHHHHHHHHHHhhc
Q 000737 1057 -YATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLN--LSVRLRNLQVSMN-VKMRRNAFAAFGALSNF 1132 (1322)
Q Consensus 1057 -~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~--l~~~lrpffede~-~~vR~aAi~lfG~L~~~ 1132 (1322)
-..-.+|.++..+..++++|.-.|+.+|++|...- ...+.+.++ +...|-.++.+.. ..+...+.-++..+++
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds--~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcr- 224 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDS--PDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCR- 224 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCC--hHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHc-
Confidence 11235888999999999999999999999998532 222222221 1222223333333 4677777777777776
Q ss_pred cCCcchHhHHHHHHHhHHHHHHhccCCChhHHHHHHHHHHhhcchh----------hh--hhhhhhccccC-------CC
Q 000737 1133 GVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFM----------EI--GVYGIFNSHCF-------NS 1193 (1322)
Q Consensus 1133 ~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L----------~~--~l~~lf~~~~~-------~~ 1193 (1322)
|+...|=.++|...|+-|..+++..|++|..-+..|+.-++.-. |. .+.+++..... ..
T Consensus 225 --gk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRa 302 (514)
T KOG0166|consen 225 --GKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRA 302 (514)
T ss_pred --CCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhh
Confidence 55566667889999999999999999999988888887655211 11 22222222100 00
Q ss_pred CCCCCh-HHHHHHHHHHHHHhCcchHHHHHHHHHhhhc-CCChhhHHHHHHHHHHhcccCchhhhhhccHHHHHHHHHHH
Q 000737 1194 DHRSDY-ETFVRDLTRQFVQHFPSRIDSYMGSTIQAFE-APWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVK 1271 (1322)
Q Consensus 1194 ~~~l~~-~~f~~~~~k~L~~~~~~~~~~~l~~~l~ylk-S~~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~ 1271 (1322)
.++.-. .+.. ...++. .-.+......+. ||-..||+.|+|+++-+.-.- .+++..+=...+++.|+.
T Consensus 303 iGNIvtG~d~Q---Tq~vi~------~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~-~~qiqaVida~l~p~Li~- 371 (514)
T KOG0166|consen 303 IGNIVTGSDEQ---TQVVIN------SGALPVLSNLLSSSPKESIKKEACWTISNITAGN-QEQIQAVIDANLIPVLIN- 371 (514)
T ss_pred ccceeeccHHH---HHHHHh------cChHHHHHHHhccCcchhHHHHHHHHHHHhhcCC-HHHHHHHHHcccHHHHHH-
Confidence 000000 0000 000000 012233334455 777789999999999887642 344444433468888999
Q ss_pred hccCCChHHHHHHHHHHHHHH
Q 000737 1272 LSQSADAIVRATCSSSLGWLL 1292 (1322)
Q Consensus 1272 Ll~Dpdp~VR~~Aa~aL~~l~ 1292 (1322)
+++.-|-..|+.|+=|++.+-
T Consensus 372 ~l~~~ef~~rKEAawaIsN~t 392 (514)
T KOG0166|consen 372 LLQTAEFDIRKEAAWAISNLT 392 (514)
T ss_pred HHhccchHHHHHHHHHHHhhc
Confidence 777788999999999987653
No 29
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=0.0014 Score=80.88 Aligned_cols=290 Identities=15% Similarity=0.113 Sum_probs=186.3
Q ss_pred HHHHHHHHHhhhcccCccchHHHHHHHHHHhhcCCchhchHHHHHHHHHhhcCCCChhHHhhhhhcccCCCchhHhhhHh
Q 000737 980 VQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYAT 1059 (1322)
Q Consensus 980 ~~~il~~l~~~l~s~~~~~Ri~a~aflsEll~~~~~~~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~~~v~~~~~ 1059 (1322)
+...|-.+.+...+.+..-|...-..+..+-...++...+ .++.+-+.|+|||+.+|..|||.|+.|.. ....|
T Consensus 69 vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL---SIntfQk~L~DpN~LiRasALRvlSsIRv---p~IaP 142 (968)
T KOG1060|consen 69 VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL---SINTFQKALKDPNQLIRASALRVLSSIRV---PMIAP 142 (968)
T ss_pred HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee---eHHHHHhhhcCCcHHHHHHHHHHHHhcch---hhHHH
Confidence 5555555556666666555555445554444444443222 37889999999999999999999999874 33466
Q ss_pred HHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhc-------
Q 000737 1060 QVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNF------- 1132 (1322)
Q Consensus 1060 ~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~------- 1132 (1322)
.+|-|+-+.-.|...-|+..|..++-|+.. ++...-. +|..-|..++.|-++.|=.+|.-+|-.++.-
T Consensus 143 I~llAIk~~~~D~s~yVRk~AA~AIpKLYs-Ld~e~k~----qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHk 217 (968)
T KOG1060|consen 143 IMLLAIKKAVTDPSPYVRKTAAHAIPKLYS-LDPEQKD----QLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHK 217 (968)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHhhHHHhc-CChhhHH----HHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhH
Confidence 778888888888888899999999999875 3433222 5556677889999999999999998776640
Q ss_pred -----cC-----Ccc-----------------h--------------------------Hh-----HHHHHHHhHHHHHH
Q 000737 1133 -----GV-----GSQ-----------------R--------------------------EA-----FLEQIHAMLPRLIL 1154 (1322)
Q Consensus 1133 -----~~-----~~~-----------------~--------------------------~~-----~~eqv~~~LvpLLl 1154 (1322)
|. .+| . .| =..-.+++.-||+
T Consensus 218 nyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl- 296 (968)
T KOG1060|consen 218 NYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLL- 296 (968)
T ss_pred HHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHH-
Confidence 00 000 0 01 0111334444443
Q ss_pred hccCCChhHHHHHHHHHHhhcchhhh-h-hhhhhccccCCCCCCCChH-----------------------------HHH
Q 000737 1155 HIYDDDLSVRQACRNTLKQVAPFMEI-G-VYGIFNSHCFNSDHRSDYE-----------------------------TFV 1203 (1322)
Q Consensus 1155 HL~D~~~~V~~ack~tL~~~a~~L~~-~-l~~lf~~~~~~~~~~l~~~-----------------------------~f~ 1203 (1322)
+-.|+.|+.||..++.++||.... + .++++.- +.+.+...|- -..
T Consensus 297 --~S~n~sVVmA~aql~y~lAP~~~~~~i~kaLvrL--Lrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~ 372 (968)
T KOG1060|consen 297 --QSRNPSVVMAVAQLFYHLAPKNQVTKIAKALVRL--LRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQ 372 (968)
T ss_pred --hcCCcHHHHHHHhHHHhhCCHHHHHHHHHHHHHH--HhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHH
Confidence 456889999999999999998777 3 3555553 2222222220 000
Q ss_pred HHHHHHHH---HhCcchHHHHHHHHHhhhcCCChhhHHHHHHHHHHhcccCchhhhhhccHHHHHHHHHHHhccCCChHH
Q 000737 1204 RDLTRQFV---QHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIV 1280 (1322)
Q Consensus 1204 ~~~~k~L~---~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~V 1280 (1322)
-.++|.=+ --+...+...+.....|.+|+...+=++|+.-||-..+....= .+...+.|+. |++..|..|
T Consensus 373 vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv------~~tCL~gLv~-Llsshde~V 445 (968)
T KOG1060|consen 373 VKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGSV------TDTCLNGLVQ-LLSSHDELV 445 (968)
T ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCch------hhHHHHHHHH-HHhcccchh
Confidence 11111111 1123456667777888999999989999999999887643211 1345567777 677778877
Q ss_pred HHHHHHHHHHHH
Q 000737 1281 RATCSSSLGWLL 1292 (1322)
Q Consensus 1281 R~~Aa~aL~~l~ 1292 (1322)
-+.|.-.+..|.
T Consensus 446 v~eaV~vIk~Ll 457 (968)
T KOG1060|consen 446 VAEAVVVIKRLL 457 (968)
T ss_pred HHHHHHHHHHHH
Confidence 777766665544
No 30
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.01 E-value=0.0016 Score=89.95 Aligned_cols=295 Identities=15% Similarity=0.079 Sum_probs=197.5
Q ss_pred chhhHHHhHHHHHHHHhhhCChhHHH------HHHHHHhhhcccCccchHHHHHHHHHHhhcCCchhchHHHHHHHHHhh
Q 000737 957 DKEKWINLIGDVAGCVSIKRPKEVQT------ICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRH 1030 (1322)
Q Consensus 957 ~~~~~~~GV~lLar~l~~~~~~~~~~------il~~l~~~l~s~~~~~Ri~a~aflsEll~~~~~~~~ll~~~~~~L~~~ 1030 (1322)
+.....+++..|... +.+ .+.++. .+..+...|++++...+..|+..+..++.+.... .+..|...
T Consensus 501 ~~~iqeeAawAL~NL-a~~-~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~------~I~~Lv~L 572 (2102)
T PLN03200 501 SQKAKEDSATVLWNL-CCH-SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA------TISQLTAL 572 (2102)
T ss_pred CHHHHHHHHHHHHHH-hCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh------HHHHHHHH
Confidence 345555566555442 222 222222 3445666788888888888888888988764321 22445555
Q ss_pred cCCCChhHHhhhhhcccCCCc----hhHhh---hHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhH
Q 000737 1031 VSDESPTVRGLCLRGLVQIPS----IHIHQ---YATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNL 1103 (1322)
Q Consensus 1031 l~D~~~~VR~lalrGLg~l~~----~~v~~---~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l 1103 (1322)
+..+++.++..+++++|++.. +++.. -....++.+.+.|+..++.+..+|..+|.++...-.+..-.-+....
T Consensus 573 Llsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~aga 652 (2102)
T PLN03200 573 LLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEI 652 (2102)
T ss_pred hcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCC
Confidence 788889999999999999853 22111 12347899999999999999999999999998743222111222334
Q ss_pred HHHhccccccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHHhccCCChhHHHHHHHHHHhhcchhhhhhh
Q 000737 1104 SVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVY 1183 (1322)
Q Consensus 1104 ~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~~~l~ 1183 (1322)
...+-.++.+.+.++|..|..+++.+...+....+..+.+ .+.++||+-.|.+.+.+|+..|..+|..++.-
T Consensus 653 IpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~--~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~------ 724 (2102)
T PLN03200 653 INPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAA--EDAIKPLIKLAKSSSIEVAEQAVCALANLLSD------ 724 (2102)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHH--cCCHHHHHHHHhCCChHHHHHHHHHHHHHHcC------
Confidence 4445557788999999999999999997332222222222 25678888899999999999999999887641
Q ss_pred hhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhhHHHHHHHHHHhcccCchhh-h-hhccH
Q 000737 1184 GIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQH-I-LSLFY 1261 (1322)
Q Consensus 1184 ~lf~~~~~~~~~~l~~~~f~~~~~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~~~~-~-~~~~~ 1261 (1322)
+++ ..-+.+ ...+...+.++++-.+..|.+|++.+..+.++-+.++ + ..+..
T Consensus 725 --------~e~------------~~ei~~------~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~ 778 (2102)
T PLN03200 725 --------PEV------------AAEALA------EDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQC 778 (2102)
T ss_pred --------chH------------HHHHHh------cCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 111 011111 1124566779999999999999999999987766333 2 22333
Q ss_pred HHHHHHHHHHhccCCChHHHHH--HHHHHHHHHHH
Q 000737 1262 TQVFGLLVVKLSQSADAIVRAT--CSSSLGWLLKS 1294 (1322)
Q Consensus 1262 e~l~~~L~~~Ll~Dpdp~VR~~--Aa~aL~~l~k~ 1294 (1322)
.-.+.+|.. +++-+|..+-.. |.++|..+-|.
T Consensus 779 ~g~v~~l~~-~L~~~~~~~~~~~~al~~l~~l~~~ 812 (2102)
T PLN03200 779 RGTVLALVD-LLNSTDLDSSATSEALEALALLART 812 (2102)
T ss_pred hCcHHHHHH-HHhcCCcchhhHHHHHHHHHHHHhh
Confidence 446677888 777666666665 99999999874
No 31
>PTZ00429 beta-adaptin; Provisional
Probab=97.97 E-value=0.0018 Score=83.42 Aligned_cols=278 Identities=10% Similarity=0.089 Sum_probs=174.9
Q ss_pred CCCchhhHHHhHHHHHHHHhhhCC-hhHHHHHHHHHhhhcccCccchHHHHHHHHHHhhcCCchhchHHHHHHHHHhhcC
Q 000737 954 EQNDKEKWINLIGDVAGCVSIKRP-KEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVS 1032 (1322)
Q Consensus 954 ~w~~~~~~~~GV~lLar~l~~~~~-~~~~~il~~l~~~l~s~~~~~Ri~a~aflsEll~~~~~~~~ll~~~~~~L~~~l~ 1032 (1322)
+-.++.++..|..+ |+|+.-+- ..+..++..+.+.+...++--|.+|+..+..+....+.. ......++.|.+.+.
T Consensus 113 Dl~d~Np~IRaLAL--RtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pel-v~~~~~~~~L~~LL~ 189 (746)
T PTZ00429 113 DTTNSSPVVRALAV--RTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQL-FYQQDFKKDLVELLN 189 (746)
T ss_pred HcCCCCHHHHHHHH--HHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCccc-ccccchHHHHHHHhc
Confidence 33367778888766 77775443 355667777788888888888888888888776543321 122347888888888
Q ss_pred CCChhHHhhhhhcccCCCc---hhHhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhcc
Q 000737 1033 DESPTVRGLCLRGLVQIPS---IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRN 1109 (1322)
Q Consensus 1033 D~~~~VR~lalrGLg~l~~---~~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrp 1109 (1322)
|+||.|..-|+..|-.+.. +... .....+.-++..|.+.++--....+..|.+-- ..+ ..-...+..++.|
T Consensus 190 D~dp~Vv~nAl~aL~eI~~~~~~~l~-l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~----P~~-~~e~~~il~~l~~ 263 (746)
T PTZ00429 190 DNNPVVASNAAAIVCEVNDYGSEKIE-SSNEWVNRLVYHLPECNEWGQLYILELLAAQR----PSD-KESAETLLTRVLP 263 (746)
T ss_pred CCCccHHHHHHHHHHHHHHhCchhhH-HHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC----CCC-cHHHHHHHHHHHH
Confidence 8888888888888887753 1221 12233455666666656555555555554311 111 2234577888889
Q ss_pred ccccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHHhccCCChhHHHHHHHHHHhhcc----hhhhhhhhh
Q 000737 1110 LQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAP----FMEIGVYGI 1185 (1322)
Q Consensus 1110 ffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~----~L~~~l~~l 1185 (1322)
.+.+.|+.|-.+|+.+|=.+.... ...+.+++..-+.+.++-|...+++++-.+-..+..+.. ++.-.++..
T Consensus 264 ~Lq~~N~AVVl~Aik~il~l~~~~----~~~~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~F 339 (746)
T PTZ00429 264 RMSHQNPAVVMGAIKVVANLASRC----SQELIERCTVRVNTALLTLSRRDAETQYIVCKNIHALLVIFPNLLRTNLDSF 339 (746)
T ss_pred HhcCCCHHHHHHHHHHHHHhcCcC----CHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhh
Confidence 999999999999999999887633 134666766555333333344566666555544433322 222233333
Q ss_pred hccccCCCCCCCChHHHHHHH--HHHHHHhCcchHHHHHHHHHhhhcCCChhhHHHHHHHHHHhcccCc
Q 000737 1186 FNSHCFNSDHRSDYETFVRDL--TRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCD 1252 (1322)
Q Consensus 1186 f~~~~~~~~~~l~~~~f~~~~--~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~ 1252 (1322)
|.+. .|- .| ++.. --...--.++.+...+.+...|..+...++++.|+.-||.+...++
T Consensus 340 f~~~--~Dp---~y---IK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~ 400 (746)
T PTZ00429 340 YVRY--SDP---PF---VKLEKLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVD 400 (746)
T ss_pred hccc--CCc---HH---HHHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCh
Confidence 3442 121 12 2111 1111223567788889999999999999999999999999976544
No 32
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.89 E-value=0.00049 Score=82.94 Aligned_cols=192 Identities=17% Similarity=0.068 Sum_probs=129.3
Q ss_pred HHHHHHHhhc-CCCChhHHhhhhhcccCCCchhHhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhH
Q 000737 1022 QMVEALCRHV-SDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPIL 1100 (1322)
Q Consensus 1022 ~~~~~L~~~l-~D~~~~VR~lalrGLg~l~~~~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l 1100 (1322)
..+..|...+ .|+++.||..+..++...... ..+.+++..|+|.++.|..++..+|+.+-. ....
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~~-------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~----~~a~--- 119 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQEDA-------LDLRSVLAVLQAGPEGLCAGIQAALGWLGG----RQAE--- 119 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhccCCh-------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCc----hHHH---
Confidence 3566778888 689999999999998866532 248889999999999999999999997553 2233
Q ss_pred HhHHHHhccccccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHHhccCCChhHHHHHHHHHHhhcchhhh
Q 000737 1101 LNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI 1180 (1322)
Q Consensus 1101 ~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~~ 1180 (1322)
..|.+.++++++.||.+++.+.|.-.. . ...+++-.|+|+++.|+.++-.+|+.+..--..
T Consensus 120 ----~~L~~~L~~~~p~vR~aal~al~~r~~-----~----------~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~a~ 180 (410)
T TIGR02270 120 ----PWLEPLLAASEPPGRAIGLAALGAHRH-----D----------PGPALEAALTHEDALVRAAALRALGELPRRLSE 180 (410)
T ss_pred ----HHHHHHhcCCChHHHHHHHHHHHhhcc-----C----------hHHHHHHHhcCCCHHHHHHHHHHHHhhccccch
Confidence 334567899999999999988887211 1 223455567899999999999999986532111
Q ss_pred -hhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhhHHHHHHHHHHhccc---------
Q 000737 1181 -GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCL--------- 1250 (1322)
Q Consensus 1181 -~l~~lf~~~~~~~~~~l~~~~f~~~~~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~--------- 1250 (1322)
.+. .+++|+.+.||.+|+.-+|.+...
T Consensus 181 ~~L~-------------------------------------------~al~d~~~~VR~aA~~al~~lG~~~A~~~l~~~ 217 (410)
T TIGR02270 181 STLR-------------------------------------------LYLRDSDPEVRFAALEAGLLAGSRLAWGVCRRF 217 (410)
T ss_pred HHHH-------------------------------------------HHHcCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Confidence 111 234555555555555444333210
Q ss_pred Cc----hh------hhhhccHHHHHHHHHHHhccCCChHHHHHHHHHHHHHH
Q 000737 1251 CD----DQ------HILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1292 (1322)
Q Consensus 1251 l~----~~------~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1292 (1322)
+. +. -+...+.+.....|+. +++|++ ||..|+.|+|.++
T Consensus 218 ~~~~g~~~~~~l~~~lal~~~~~a~~~L~~-ll~d~~--vr~~a~~AlG~lg 266 (410)
T TIGR02270 218 QVLEGGPHRQRLLVLLAVAGGPDAQAWLRE-LLQAAA--TRREALRAVGLVG 266 (410)
T ss_pred HhccCccHHHHHHHHHHhCCchhHHHHHHH-HhcChh--hHHHHHHHHHHcC
Confidence 00 00 0000123456677887 788876 9999999999876
No 33
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.88 E-value=0.0039 Score=76.24 Aligned_cols=360 Identities=16% Similarity=0.160 Sum_probs=228.6
Q ss_pred hHHHHHHHHHHhhhhccCCCCC----------------CCCh----HHHHHHHHHHHHHHhCcHHHHHHHHh-----cCC
Q 000737 900 YAPVLAALTLQLGSCHGLASSG----------------QHEP----LRAILTSFQAFCECVGDLEMRKILAR-----DGE 954 (1322)
Q Consensus 900 fp~Lf~aLL~ql~~~~~l~~~~----------------~~~P----~~~aleAlk~ll~~~g~~~~~~~Le~-----~~~ 954 (1322)
=..-|.+||.-+||.+-+-.+. ...| -.+.+..++.-+.+.|-+.-...-+. ..-
T Consensus 607 rgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~f 686 (1172)
T KOG0213|consen 607 RGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSF 686 (1172)
T ss_pred cChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhh
Confidence 3344799999999988873220 1122 23455555554444444332222221 234
Q ss_pred CC-----chhhHHHhHHHHHHHHhhhCChhHHHHHHHHHhhhcccCccchHHHHHHHHHHhhcCCc---hhchHHHHHHH
Q 000737 955 QN-----DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGG---FDSLLEQMVEA 1026 (1322)
Q Consensus 955 w~-----~~~~~~~GV~lLar~l~~~~~~~~~~il~~l~~~l~s~~~~~Ri~a~aflsEll~~~~~---~~~ll~~~~~~ 1026 (1322)
|. +-..|.+-|.. +-.+|..-+ ..+++..++--+.+..+.+|..++...+..+..-+. .+.+-+.++..
T Consensus 687 w~rrmA~drr~ykqlv~t-tv~ia~KvG--~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidg 763 (1172)
T KOG0213|consen 687 WGRRMALDRRNYKQLVDT-TVEIAAKVG--SDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDG 763 (1172)
T ss_pred hhhhhhccccchhhHHHH-HHHHHHHhC--chHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHH
Confidence 54 44455555544 666776655 356667777778899999999998888887775432 34455556666
Q ss_pred HHhhcCCCChhHHhhhhhcccCCCc---hhHhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhH
Q 000737 1027 LCRHVSDESPTVRGLCLRGLVQIPS---IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNL 1103 (1322)
Q Consensus 1027 L~~~l~D~~~~VR~lalrGLg~l~~---~~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l 1103 (1322)
++..+......+- .-+.|+|-+.. ..+..|.+++...++..|..+...|+..|....+.+.-.+..-+-...+-.+
T Consensus 764 il~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~l 842 (1172)
T KOG0213|consen 764 ILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHL 842 (1172)
T ss_pred HHHHHHhcccchh-hhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHh
Confidence 6666665555544 44677776653 5667899999999999999998888888877777665444333323333344
Q ss_pred HHHhccccccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHHhccCCChhHHHHHHHHHHhhcchhhhhhh
Q 000737 1104 SVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVY 1183 (1322)
Q Consensus 1104 ~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~~~l~ 1183 (1322)
-.-|--.++.|.++|=.+-+.++-++.++.+.....|=..++ |+.|.--|+.-+..|...|-+-++.+|-.
T Consensus 843 GvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dl---lPrltPILknrheKVqen~IdLvg~Iadr------ 913 (1172)
T KOG0213|consen 843 GVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDL---LPRLTPILKNRHEKVQENCIDLVGTIADR------ 913 (1172)
T ss_pred hHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhh---cccchHhhhhhHHHHHHHHHHHHHHHHhc------
Confidence 444556889999999888888888887755444444433444 44444455667778998898888887741
Q ss_pred hhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhhHHHHHHHHHHhcccCchhhh-------
Q 000737 1184 GIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHI------- 1256 (1322)
Q Consensus 1184 ~lf~~~~~~~~~~l~~~~f~~~~~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~~~~~------- 1256 (1322)
+.. ..+..+++ .||= ..+..+|+-...||+||+--.|++.+...++..
T Consensus 914 --------gpE-~v~aREWM-RIcf---------------eLlelLkahkK~iRRaa~nTfG~IakaIGPqdVLatLlnn 968 (1172)
T KOG0213|consen 914 --------GPE-YVSAREWM-RICF---------------ELLELLKAHKKEIRRAAVNTFGYIAKAIGPQDVLATLLNN 968 (1172)
T ss_pred --------Ccc-cCCHHHHH-HHHH---------------HHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHHHHHHHHhc
Confidence 111 34456665 3333 245578888999999999999998654433332
Q ss_pred ------hh-----cc---------HHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhccc
Q 000737 1257 ------LS-----LF---------YTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSINSH 1298 (1322)
Q Consensus 1257 ------~~-----~~---------~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~~~ 1298 (1322)
.+ +. .-.+.++|.. ==+-|+..|+.....||++++++.+.-
T Consensus 969 LkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmn-eYrtPe~nVQnGVLkalsf~Feyigem 1029 (1172)
T KOG0213|consen 969 LKVQERQNRVCTTVAIAIVAETCGPFTVLPALMN-EYRTPEANVQNGVLKALSFMFEYIGEM 1029 (1172)
T ss_pred chHHHHHhchhhhhhhhhhhhhcCchhhhHHHHh-hccCchhHHHHhHHHHHHHHHHHHHHH
Confidence 11 11 1124444444 234599999999999999999887653
No 34
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=0.032 Score=69.32 Aligned_cols=460 Identities=15% Similarity=0.156 Sum_probs=239.2
Q ss_pred cCChhHHHHHHHHHHHhccCCC--hhhHHHHHHHHHHHHhhccCccccccHHHHHHHHHHHhhhcCcHHHHHHHHHHHHH
Q 000737 734 LLTKDELVATLHSCTTAICDRT--KQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISC 811 (1322)
Q Consensus 734 ~L~~~el~~li~~ll~~L~d~~--~~~~~~A~~~L~~~l~~~g~~L~e~~V~eI~~~i~~~L~~i~~~~~r~~~l~aI~l 811 (1322)
.+..+-+..|+..+-+-|.|.+ ...+.+|+-.|+.-+..+.++.+.. .+.--.++++-.-..+|..+++++..
T Consensus 27 ~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~-----~~qRWl~l~~e~reqVK~~il~tL~~ 101 (859)
T KOG1241|consen 27 QAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQ-----YQQRWLQLPAEIREQVKNNILRTLGS 101 (859)
T ss_pred HHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHH-----HHHHHHcCCHHHHHHHHHHHHHHcCC
Confidence 3344456677778888886654 3455889989998888776665211 22223356666666677766666541
Q ss_pred H------------HhhcCCCcccchhhhhhcCcchhhhHhhhcCCCcchhhhhcCCCCCCCCCCCCCCcccchHHHHHHH
Q 000737 812 L------------AENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHGDMEKGDYSSHSADTWIDDDILQAAIL 879 (1322)
Q Consensus 812 L------------a~~h~~~lp~d~w~al~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~laA~~ 879 (1322)
= |.--.-++|-..|..+ +.. +..+. . .+ .+...--.++-|+.
T Consensus 102 ~ep~~~s~Aaq~va~IA~~ElP~n~wp~l---------i~~------lv~nv-----~----~~--~~~~~k~~slealG 155 (859)
T KOG1241|consen 102 PEPRRPSSAAQCVAAIACIELPQNQWPEL---------IVT------LVSNV-----G----EE--QASMVKESSLEALG 155 (859)
T ss_pred CCCCccchHHHHHHHHHHhhCchhhCHHH---------HHH------HHHhc-----c----cc--cchHHHHHHHHHHH
Confidence 1 1100123444444321 110 11111 0 00 00000011233333
Q ss_pred HHHHHHhcCCcchHHHHHHhhHHHHHHHHHHhhhhccCCCCCCCChHHHHHHHHHHHHHHhCcHH-HH-HHHHh------
Q 000737 880 ALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEPLRAILTSFQAFCECVGDLE-MR-KILAR------ 951 (1322)
Q Consensus 880 aL~Ell~~~~~~~~~~v~~~fp~Lf~aLL~ql~~~~~l~~~~~~~P~~~aleAlk~ll~~~g~~~-~~-~~Le~------ 951 (1322)
-++| . -...++.+-+-.++.+. +.|..+.+..+ ..=+.|+++|..+.+..+ -| +.+|+
T Consensus 156 yice---~---i~pevl~~~sN~iLtaI------v~gmrk~e~s~--~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqv 221 (859)
T KOG1241|consen 156 YICE---D---IDPEVLEQQSNDILTAI------VQGMRKEETSA--AVRLAALNALYNSLEFTKANFNNEMERNYIMQV 221 (859)
T ss_pred HHHc---c---CCHHHHHHHHhHHHHHH------HhhccccCCch--hHHHHHHHHHHHHHHHHHHhhccHhhhceeeee
Confidence 3333 2 22235666666666555 34554443222 233456677777754333 12 33343
Q ss_pred -cCCCC--chhhHHHhHHHHHHHHhhhC---ChhH-HHHHHHHHhhhcccCccchHHHHHHHHHHhhcCCchhchHHHHH
Q 000737 952 -DGEQN--DKEKWINLIGDVAGCVSIKR---PKEV-QTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMV 1024 (1322)
Q Consensus 952 -~~~w~--~~~~~~~GV~lLar~l~~~~---~~~~-~~il~~l~~~l~s~~~~~Ri~a~aflsEll~~~~~~~~ll~~~~ 1024 (1322)
...|. +.+--.-+..=|.|-|.-|. .+.+ ++++..-...+.|+++.--+-|+=|-+-.-..-.+ +....-
T Consensus 222 vcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD---~~~e~~ 298 (859)
T KOG1241|consen 222 VCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEID---LAIEYG 298 (859)
T ss_pred eeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 23565 33333333344556665443 3344 44777777888888888777777776543211111 111111
Q ss_pred HHHHhhcCCCChhHHhhhhhcccCCCchhHhhhHhHHHHHHHhhcccCC----h---HHHHHHHHHHHHHhccCCcccch
Q 000737 1025 EALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLD----E---SVQLTAVSCLLTILKSSSKDAVE 1097 (1322)
Q Consensus 1025 ~~L~~~l~D~~~~VR~lalrGLg~l~~~~v~~~~~~lL~all~~L~d~d----~---~V~leam~~L~~ll~~l~~~~~~ 1097 (1322)
....+++. |.-...+ +.-.+.++|.+++.|...| + ++.+.|=.+|.-.-+..+++-+.
T Consensus 299 e~~d~~~~---p~~~~fa------------~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~ 363 (859)
T KOG1241|consen 299 EAVDQGLP---PSSKYFA------------RQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVP 363 (859)
T ss_pred HHhhcCCC---chhhHHH------------HHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchh
Confidence 11111111 2111111 1122346666666665432 2 27777777777777766665554
Q ss_pred hhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHHhccCCChhHHHHHHHHHHhhcch
Q 000737 1098 PILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPF 1177 (1322)
Q Consensus 1098 ~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~ 1177 (1322)
+++.= +..-+.+++.+-|.+|+-+||.+.. |.+..-++.-|.+.++.++.-+.|++.-|+..+..||++++.+
T Consensus 364 ~Vl~F----iee~i~~pdwr~reaavmAFGSIl~---gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~ 436 (859)
T KOG1241|consen 364 HVLPF----IEENIQNPDWRNREAAVMAFGSILE---GPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADF 436 (859)
T ss_pred hhHHH----HHHhcCCcchhhhhHHHHHHHhhhc---CCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhh
Confidence 43321 1223447999999999999999997 5666666667777888888888899999999999999999976
Q ss_pred hhh-hhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhhHHHHHHHHHHhcccCc----
Q 000737 1178 MEI-GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCD---- 1252 (1322)
Q Consensus 1178 L~~-~l~~lf~~~~~~~~~~l~~~~f~~~~~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~---- 1252 (1322)
+-- -.++. ........+ +.-++ ..|++=.++.|-.-.+..+..
T Consensus 437 l~e~~~n~~----------------~l~~~l~~l---------------~~gL~-DePrva~N~CWAf~~Laea~~eA~~ 484 (859)
T KOG1241|consen 437 LPEAIINQE----------------LLQSKLSAL---------------LEGLN-DEPRVASNVCWAFISLAEAAYEAAV 484 (859)
T ss_pred chhhcccHh----------------hhhHHHHHH---------------HHHhh-hCchHHHHHHHHHHHHHHHHHHhcc
Confidence 543 11111 000111111 11222 234455555554444442211
Q ss_pred hhh---hhhccHHHHHHHHHHHhcc--C-CChHHHHHHHHHHHHHHHHhc
Q 000737 1253 DQH---ILSLFYTQVFGLLVVKLSQ--S-ADAIVRATCSSSLGWLLKSIN 1296 (1322)
Q Consensus 1253 ~~~---~~~~~~e~l~~~L~~~Ll~--D-pdp~VR~~Aa~aL~~l~k~~~ 1296 (1322)
... ..+.-.+.+++.|.+. -. | -+...|..|=+||+.+.|.|-
T Consensus 485 s~~qt~~~t~~y~~ii~~Ll~~-tdr~dgnqsNLR~AAYeALmElIk~st 533 (859)
T KOG1241|consen 485 SNGQTDPATPFYEAIIGSLLKV-TDRADGNQSNLRSAAYEALMELIKNST 533 (859)
T ss_pred CCCCCCccchhHHHHHHHHHhh-ccccccchhhHHHHHHHHHHHHHHcCc
Confidence 110 0112345666666652 22 3 568899999999999887764
No 35
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=0.0021 Score=84.30 Aligned_cols=330 Identities=15% Similarity=0.145 Sum_probs=216.9
Q ss_pred chhhHHHhHHHHHHHHhhhCChhHHHHHHHHHhhhcccCccchHHHHHH-HHHHhhcCCc-hhchHHHHHHHHHhhcCCC
Q 000737 957 DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAA-LSEFVRYSGG-FDSLLEQMVEALCRHVSDE 1034 (1322)
Q Consensus 957 ~~~~~~~GV~lLar~l~~~~~~~~~~il~~l~~~l~s~~~~~Ri~a~af-lsEll~~~~~-~~~ll~~~~~~L~~~l~D~ 1034 (1322)
...||-+-..+ |.-|.+ |.+++.+...-++.--+.-.-++|| |+-+...... .+-.++.+++.|-+.--||
T Consensus 938 ~isTYKELc~L-ASdl~q------PdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP 1010 (1702)
T KOG0915|consen 938 KISTYKELCNL-ASDLGQ------PDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDP 1010 (1702)
T ss_pred cchHHHHHHHH-HhhcCC------hHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCC
Confidence 55677776655 876643 5555655555555544444444444 3444444433 3456678999999999999
Q ss_pred ChhHHhhhhhcccCCC--c--hhHhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccc
Q 000737 1035 SPTVRGLCLRGLVQIP--S--IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNL 1110 (1322)
Q Consensus 1035 ~~~VR~lalrGLg~l~--~--~~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpf 1110 (1322)
++.|+.. ...+.|.- + .-+.+|...++.-++.+|-+..=.|+-.++.+|..+++.-+...+.--++.+=..+..-
T Consensus 1011 ~~~Vq~a-M~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRv 1089 (1702)
T KOG0915|consen 1011 DKKVQDA-MTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRV 1089 (1702)
T ss_pred cHHHHHH-HHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 9999974 34444432 2 34689999999999999998877899999999999999988888888889999999999
Q ss_pred cccCChhHHHHHHHHHHHHhhccCC---cchHhHHHHHHHhHHHHHH--hccCCChhHHHHHHHHHHhhcchhhhhhhhh
Q 000737 1111 QVSMNVKMRRNAFAAFGALSNFGVG---SQREAFLEQIHAMLPRLIL--HIYDDDLSVRQACRNTLKQVAPFMEIGVYGI 1185 (1322)
Q Consensus 1111 fede~~~vR~aAi~lfG~L~~~~~~---~~~~~~~eqv~~~LvpLLl--HL~D~~~~V~~ack~tL~~~a~~L~~~l~~l 1185 (1322)
.||-.+.||.+|=.+-..+++.+.. .....=-.+++.++.|.++ |.--.-++||..|-.|+-.++.+-|-.++.-
T Consensus 1090 mDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~ 1169 (1702)
T KOG0915|consen 1090 MDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPH 1169 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcch
Confidence 9999999999998776666663221 1111122578889999998 7666678999999999877775544422222
Q ss_pred hccc------cCCCC--CCCChH---------HHH--------------HHHHHHHHHhCcchHHHHHHHHHhhhcCCC-
Q 000737 1186 FNSH------CFNSD--HRSDYE---------TFV--------------RDLTRQFVQHFPSRIDSYMGSTIQAFEAPW- 1233 (1322)
Q Consensus 1186 f~~~------~~~~~--~~l~~~---------~f~--------------~~~~k~L~~~~~~~~~~~l~~~l~ylkS~~- 1233 (1322)
+.+. ..++- .-++|- +.+ .++=+++-.-.-..+...+--.....++.-
T Consensus 1170 ~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVg 1249 (1702)
T KOG0915|consen 1170 FPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVG 1249 (1702)
T ss_pred hhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCC
Confidence 2211 01110 012220 011 111111111111111112222233333332
Q ss_pred hhhHHHHHHHHHHhcccCchhhhhhccHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhcc
Q 000737 1234 PIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSINS 1297 (1322)
Q Consensus 1234 ~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~~ 1297 (1322)
-.-|-+++.||-.+.+-+..|+- ....-++.++.. ..+|-.+.||+.-+-|+|++.|++..
T Consensus 1250 l~Tkvg~A~fI~~L~~r~~~emt--P~sgKll~al~~-g~~dRNesv~kafAsAmG~L~k~Ss~ 1310 (1702)
T KOG0915|consen 1250 LGTKVGCASFISLLVQRLGSEMT--PYSGKLLRALFP-GAKDRNESVRKAFASAMGYLAKFSSP 1310 (1702)
T ss_pred CCcchhHHHHHHHHHHHhccccC--cchhHHHHHHhh-ccccccHHHHHHHHHHHHHHHhcCCh
Confidence 34688899999999876665553 344567888888 89999999999999999999998764
No 36
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.73 E-value=0.00049 Score=76.75 Aligned_cols=185 Identities=19% Similarity=0.204 Sum_probs=115.1
Q ss_pred CChHHHHHHHHHHHHHhccC-Ccccchhh---HHhHHHHhccccccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHH
Q 000737 1072 LDESVQLTAVSCLLTILKSS-SKDAVEPI---LLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHA 1147 (1322)
Q Consensus 1072 ~d~~V~leam~~L~~ll~~l-~~~~~~~~---l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~ 1147 (1322)
.|=+.+.+|+..|..++..- .......+ +.++...+-..+.|.+..|-..|..+++.++... +...++ .+-.
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l-~~~~~~---~~~~ 94 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQL-GSHFEP---YADI 94 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHH-GGGGHH---HHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-hHhHHH---HHHH
Confidence 34468899999999998654 12222222 3333456667888999999999999999999843 233344 4445
Q ss_pred hHHHHHHhccCCChhHHHHHHHHHHhhcchhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHh
Q 000737 1148 MLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQ 1227 (1322)
Q Consensus 1148 ~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~~~l~~lf~~~~~~~~~~l~~~~f~~~~~k~L~~~~~~~~~~~l~~~l~ 1227 (1322)
.+++|+-.+.|.+..|+++|..||..+....+. .... ...-...
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~------------------~~~~------------------~~~~l~~ 138 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSY------------------SPKI------------------LLEILSQ 138 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--------------------HH------------------HHHHHHH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCc------------------HHHH------------------HHHHHHH
Confidence 667777799999999999999998876642110 0001 0112233
Q ss_pred hhcCCChhhHHHHHHHHHHhcccCc--hhhhhh-ccHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhcc
Q 000737 1228 AFEAPWPIIQANAIYFSSSILCLCD--DQHILS-LFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSINS 1297 (1322)
Q Consensus 1228 ylkS~~~~IR~aA~~fiG~l~~~l~--~~~~~~-~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~~ 1297 (1322)
..++..+.+|..++.++..++...+ ...+.. ...+.+.+.+.. ++.|++|.||..|.+++..+.+....
T Consensus 139 ~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~-~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 139 GLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVK-LLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp HTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHH-HHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 6688889999999999999988766 232221 235778899988 89999999999999999999765443
No 37
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.72 E-value=0.00059 Score=80.72 Aligned_cols=110 Identities=26% Similarity=0.284 Sum_probs=85.5
Q ss_pred HHHHHHHhhcCCCChhHHhhhhhcccCCCchhHhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHH
Q 000737 1022 QMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILL 1101 (1322)
Q Consensus 1022 ~~~~~L~~~l~D~~~~VR~lalrGLg~l~~~~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~ 1101 (1322)
..+..+.+.+.|+++.||..+..-+|.++. ...++.+...+.|.+..|+..|..+|+++... ..+ +.+
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~---~a~-~~l- 110 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS-------EEAVPLLRELLSDEDPRVRDAAADALGELGDP---EAV-PPL- 110 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCh---hHH-HHH-
Confidence 356788888899999999999999999985 35688999999999999999999988877642 222 222
Q ss_pred hHHHHhccccc-cCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHHhccCCChhH
Q 000737 1102 NLSVRLRNLQV-SMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSV 1163 (1322)
Q Consensus 1102 ~l~~~lrpffe-de~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V 1163 (1322)
..+++ |++..||..|...+|.+..- +.+.|++-.++|+...+
T Consensus 111 ------i~~l~~d~~~~vR~~aa~aL~~~~~~--------------~a~~~l~~~l~~~~~~~ 153 (335)
T COG1413 111 ------VELLENDENEGVRAAAARALGKLGDE--------------RALDPLLEALQDEDSGS 153 (335)
T ss_pred ------HHHHHcCCcHhHHHHHHHHHHhcCch--------------hhhHHHHHHhccchhhh
Confidence 33455 89999999999999997641 24778888888877443
No 38
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.67 E-value=0.0073 Score=72.70 Aligned_cols=343 Identities=16% Similarity=0.168 Sum_probs=212.8
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHh----cCCCCchhhHHHhHHHHHHHHhh----hCChhHHHHHHHHHhhhcccCccchH
Q 000737 929 ILTSFQAFCECVGDLEMRKILAR----DGEQNDKEKWINLIGDVAGCVSI----KRPKEVQTICLILTKSINRQQRFQRE 1000 (1322)
Q Consensus 929 aleAlk~ll~~~g~~~~~~~Le~----~~~w~~~~~~~~GV~lLar~l~~----~~~~~~~~il~~l~~~l~s~~~~~Ri 1000 (1322)
+-.|+-.+-..-|..++.-.++. ...|+.- +.||.. +..++. ..-+++.+++..+.+.+....-.-|+
T Consensus 301 t~ra~~vva~algv~~llpfl~a~c~SrkSw~aR---hTgiri-~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi 376 (975)
T COG5181 301 TGRAVGVVADALGVEELLPFLEALCGSRKSWEAR---HTGIRI-AQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRI 376 (975)
T ss_pred HHHHHHHHHHhhCcHHHHHHHHHHhcCccchhhh---chhhHH-HHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeee
Confidence 34455555566688887777774 1377633 334433 333333 23358999999999999999999998
Q ss_pred HHHHHHHHHhhc--CCchhchHHHHHHHHHhhcCCCChhHHhhhhhcccCCCc----hhHhhhHhHHHHHHHhhcccCCh
Q 000737 1001 AAAAALSEFVRY--SGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS----IHIHQYATQVLSVILALLDDLDE 1074 (1322)
Q Consensus 1001 ~a~aflsEll~~--~~~~~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~----~~v~~~~~~lL~all~~L~d~d~ 1074 (1322)
.++-.++-+-.. |-. -...+.++.-|-++.+..-..+=..-|++.|.+-+ +=...+....+..+...|+.+|+
T Consensus 377 ~tA~alS~lae~~~Pyg-ie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spde 455 (975)
T COG5181 377 DTANALSYLAELVGPYG-IEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDE 455 (975)
T ss_pred hhHhHHHHHHHhcCCcc-hHHHHHHHHHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchh
Confidence 887776655543 222 24456667777777776666666667888887743 22223334445555555555543
Q ss_pred H------HHH------------------------------------------HHHHHHHHHhccCCcccchhhHHhHHHH
Q 000737 1075 S------VQL------------------------------------------TAVSCLLTILKSSSKDAVEPILLNLSVR 1106 (1322)
Q Consensus 1075 ~------V~l------------------------------------------eam~~L~~ll~~l~~~~~~~~l~~l~~~ 1106 (1322)
+ ++. .+-..|.+.+. -..+..+
T Consensus 456 emkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g----------~~~v~~k 525 (975)
T COG5181 456 EMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGG----------DPRVSRK 525 (975)
T ss_pred hcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcC----------ChHHHHH
Confidence 3 111 11111221111 1245567
Q ss_pred hccccccCChhHHHHHHHH----HHHHhhccCCcc-h--------HhHHHH------H------------------HHhH
Q 000737 1107 LRNLQVSMNVKMRRNAFAA----FGALSNFGVGSQ-R--------EAFLEQ------I------------------HAML 1149 (1322)
Q Consensus 1107 lrpffede~~~vR~aAi~l----fG~L~~~~~~~~-~--------~~~~eq------v------------------~~~L 1149 (1322)
+...|.||.+.-|..+..+ ||.|...+-++. . .+|.|| | ..-+
T Consensus 526 il~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~i 605 (975)
T COG5181 526 ILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMI 605 (975)
T ss_pred HHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHHH
Confidence 7788999999988877755 555554322211 1 233444 0 1223
Q ss_pred HHHHH-hccCCChhHHHHHHHHHHhhcchhhh--------hhhhhhccccCCCCCCCChHH----HHHHHHHHHH----H
Q 000737 1150 PRLIL-HIYDDDLSVRQACRNTLKQVAPFMEI--------GVYGIFNSHCFNSDHRSDYET----FVRDLTRQFV----Q 1212 (1322)
Q Consensus 1150 vpLLl-HL~D~~~~V~~ack~tL~~~a~~L~~--------~l~~lf~~~~~~~~~~l~~~~----f~~~~~k~L~----~ 1212 (1322)
|+-++ ||+...|+||..+.++.+.+++.++. ++..++-+. +++ .|++ .++.+|..-. .
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~-lge----~ypEvLgsil~Ai~~I~sv~~~~ 680 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYEN-LGE----DYPEVLGSILKAICSIYSVHRFR 680 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHh-cCc----ccHHHHHHHHHHHHHHhhhhccc
Confidence 33334 99999999999999999999998883 222222222 222 2444 4444444332 2
Q ss_pred hCcchHHHHHHHHHhhhcCCChhhHHHHHHHHHHhcccCc----hhhhhhccHHHHHHHHHHHhccCCChHHHHHHHHHH
Q 000737 1213 HFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCD----DQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSL 1288 (1322)
Q Consensus 1213 ~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~----~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL 1288 (1322)
+.+.-++..+-...+-+++-+..|..+-+-|+|.+..+.+ ..++-. ++=.|++ +++.-.-.+|+.|.+|+
T Consensus 681 ~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR-----IcfeLvd-~Lks~nKeiRR~A~~tf 754 (975)
T COG5181 681 SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR-----ICFELVD-SLKSWNKEIRRNATETF 754 (975)
T ss_pred ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH-----HHHHHHH-HHHHhhHHHHHhhhhhh
Confidence 3344677777788889999999999999999999876544 333322 3444778 78889999999999999
Q ss_pred HHHHHHhcc
Q 000737 1289 GWLLKSINS 1297 (1322)
Q Consensus 1289 ~~l~k~~~~ 1297 (1322)
|++-|..+-
T Consensus 755 G~Is~aiGP 763 (975)
T COG5181 755 GCISRAIGP 763 (975)
T ss_pred hhHHhhcCH
Confidence 999876553
No 39
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.63 E-value=0.0017 Score=76.74 Aligned_cols=268 Identities=20% Similarity=0.177 Sum_probs=165.9
Q ss_pred HHHHHHHHhhhcccCccchHHHHHHHHHHhhcCCchhchHHHHHHHHHhhcCCCChhHHhhhhhcccCCCchhHhhhHhH
Q 000737 981 QTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQ 1060 (1322)
Q Consensus 981 ~~il~~l~~~l~s~~~~~Ri~a~aflsEll~~~~~~~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~~~v~~~~~~ 1060 (1322)
+.....+...+.+++..-|..|+..++++- .+..+..+.+.+.|+++.||..+..+||++..+ .
T Consensus 42 ~~~~~~~~~~l~~~~~~vr~~aa~~l~~~~---------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~-------~ 105 (335)
T COG1413 42 PEAADELLKLLEDEDLLVRLSAAVALGELG---------SEEAVPLLRELLSDEDPRVRDAAADALGELGDP-------E 105 (335)
T ss_pred hhhHHHHHHHHcCCCHHHHHHHHHHHhhhc---------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCh-------h
Confidence 467778888888888888877776655531 145677888999999999999999999999963 3
Q ss_pred HHHHHHhhcc-cCChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHh----ccccccCChhHHHHHHHHHHHHhhccCC
Q 000737 1061 VLSVILALLD-DLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRL----RNLQVSMNVKMRRNAFAAFGALSNFGVG 1135 (1322)
Q Consensus 1061 lL~all~~L~-d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~l----rpffede~~~vR~aAi~lfG~L~~~~~~ 1135 (1322)
.++.++..|. |.+..|+..+..+|+++... ..+.+++..+.... -.-.+.....+|.+|+..+|.+.. .
T Consensus 106 a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~---~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~---~ 179 (335)
T COG1413 106 AVPPLVELLENDENEGVRAAAARALGKLGDE---RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD---P 179 (335)
T ss_pred HHHHHHHHHHcCCcHhHHHHHHHHHHhcCch---hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC---h
Confidence 4666667776 67888999999999998753 22333222110000 000011223689999999998764 1
Q ss_pred cchHhHHHHHHHhHHHHHHhccCCChhHHHHHHHHHHhhcchhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCc
Q 000737 1136 SQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFP 1215 (1322)
Q Consensus 1136 ~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~~~l~~lf~~~~~~~~~~l~~~~f~~~~~k~L~~~~~ 1215 (1322)
....++.-++.|++..||.++..+|+..+....+....++.. .++. . ...-......|.....
T Consensus 180 -----------~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~~~~~~~l~~~--~~~~-~---~~vr~~~~~~l~~~~~ 242 (335)
T COG1413 180 -----------EAIPLLIELLEDEDADVRRAAASALGQLGSENVEAADLLVKA--LSDE-S---LEVRKAALLALGEIGD 242 (335)
T ss_pred -----------hhhHHHHHHHhCchHHHHHHHHHHHHHhhcchhhHHHHHHHH--hcCC-C---HHHHHHHHHHhcccCc
Confidence 133455668899999999999999999887642211111111 1111 0 0011122233333322
Q ss_pred chHHHHHHHHHhhhcCCChhhHHHHHHHHHHhcccCchhhhhhccHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHh
Q 000737 1216 SRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSI 1295 (1322)
Q Consensus 1216 ~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~ 1295 (1322)
.. .......++++....++..+....|.. +.......+.. ...|.+..+|..++.+++..+...
T Consensus 243 ~~---~~~~l~~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~~~~~ 306 (335)
T COG1413 243 EE---AVDALAKALEDEDVILALLAAAALGAL------------DLAEAALPLLL-LLIDEANAVRLEAALALGQIGQEK 306 (335)
T ss_pred ch---hHHHHHHHHhccchHHHHHHHHHhccc------------CchhhHHHHHH-HhhcchhhHHHHHHHHHHhhcccc
Confidence 22 223334467777777777666555511 11222233444 578899999999999988888666
Q ss_pred cccccccc
Q 000737 1296 NSHSWRST 1303 (1322)
Q Consensus 1296 ~~~~~~~~ 1303 (1322)
...-|...
T Consensus 307 ~~~a~~~~ 314 (335)
T COG1413 307 AVAALLLA 314 (335)
T ss_pred hHHHHHHH
Confidence 65555443
No 40
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.60 E-value=0.00047 Score=76.85 Aligned_cols=190 Identities=19% Similarity=0.187 Sum_probs=117.0
Q ss_pred cccCccchHHHHHHHHHHhhcC--Cc-hhc---hHHHHHHHHHhhcCCCChhHHhhhhhcccCCCc---hhHhhhHhHHH
Q 000737 992 NRQQRFQREAAAAALSEFVRYS--GG-FDS---LLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS---IHIHQYATQVL 1062 (1322)
Q Consensus 992 ~s~~~~~Ri~a~aflsEll~~~--~~-~~~---ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~---~~v~~~~~~lL 1062 (1322)
++.+=..|..|+--+-.++.+. .. ... .++.++..+...+.|.+..|-+.|+.-++.++. ..+..+...++
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 3444555677777777777655 11 122 233455788899999999999999998888875 56888899999
Q ss_pred HHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhH-HHHhccccccCChhHHHHHHHHHHHHhhccCCcchHhH
Q 000737 1063 SVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNL-SVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAF 1141 (1322)
Q Consensus 1063 ~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l-~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~~~~ 1141 (1322)
|.++.-+.+....|.-.|..+|..+..... +...+ ...+.+...+.++.+|..+...+..+..... .....+
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~------~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~-~~~~~l 169 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCS------YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWG-SDSSVL 169 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT------GGG
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCC------cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcc-chHhhh
Confidence 999999999888899999999999998764 11122 3445678899999999999999999987433 111222
Q ss_pred HH-HHHHhHHHHHH-hccCCChhHHHHHHHHHHhhcchhhhhhhhhhcc
Q 000737 1142 LE-QIHAMLPRLIL-HIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNS 1188 (1322)
Q Consensus 1142 ~e-qv~~~LvpLLl-HL~D~~~~V~~ack~tL~~~a~~L~~~l~~lf~~ 1188 (1322)
.. ..+..+++.+. .+.|.+++||++||.+|..+....+-....+++.
T Consensus 170 ~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~~~ 218 (228)
T PF12348_consen 170 QKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAESILSM 218 (228)
T ss_dssp --HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH------
T ss_pred cccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccchhc
Confidence 22 22334444443 7789999999999999998866554444444433
No 41
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.50 E-value=0.2 Score=60.58 Aligned_cols=281 Identities=15% Similarity=0.124 Sum_probs=162.7
Q ss_pred hHHHHHHHHHhhhcccCccchHHHHHHHHHHhhcCCc--hhchHHHHHHHHHhhcCCCChhHHhhhhhcccCCCc---hh
Q 000737 979 EVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGG--FDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS---IH 1053 (1322)
Q Consensus 979 ~~~~il~~l~~~l~s~~~~~Ri~a~aflsEll~~~~~--~~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~---~~ 1053 (1322)
.++|++.++-..+++++-.+|-+|+..|+..+.+|.. .-....+.++.+.+--+|++--|..-..-.+|.+++ +-
T Consensus 363 i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~ 442 (858)
T COG5215 363 IMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMI 442 (858)
T ss_pred hHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999999998765 234456678888888899999998888778888875 11
Q ss_pred H--hhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcc------cchhhHHhHHHHhc---cccccCChhHHHHH
Q 000737 1054 I--HQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKD------AVEPILLNLSVRLR---NLQVSMNVKMRRNA 1122 (1322)
Q Consensus 1054 v--~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~------~~~~~l~~l~~~lr---pffede~~~vR~aA 1122 (1322)
+ ..|.+....+++-||.| .+.+........-++.+++.+. .+.++.+.|...|- ..- +.....|.++
T Consensus 443 i~p~~Hl~~~vsa~liGl~D-~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~-~Ne~n~R~s~ 520 (858)
T COG5215 443 ISPCGHLVLEVSASLIGLMD-CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELA-LNESNLRVSL 520 (858)
T ss_pred cCccccccHHHHHHHhhhhc-cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhh-ccchhHHHHH
Confidence 1 23556678888888887 3445555555555555444332 24455555544441 122 4456799999
Q ss_pred HHHHHHHhhccCCcchHhHHHHHHHhHHHHHHhccCCChhHH-----------------------HHHHHHHHhhcchhh
Q 000737 1123 FAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVR-----------------------QACRNTLKQVAPFME 1179 (1322)
Q Consensus 1123 i~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~-----------------------~ack~tL~~~a~~L~ 1179 (1322)
|+++|.+.-++... ..+ +..++-.....=-|++.+|- .+--.+.+ +-.+
T Consensus 521 fsaLgtli~~~~d~-V~~----~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~---~~ie 592 (858)
T COG5215 521 FSALGTLILICPDA-VSD----ILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRR---RDIE 592 (858)
T ss_pred HHHHHHHHhhcchh-HHH----HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC---CCcc
Confidence 99999999876432 111 11111111111112222221 11111111 1011
Q ss_pred h---hhhhhhccccCCCC-CCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhh----hcCCChhhHHHHHHHHHHhcccC
Q 000737 1180 I---GVYGIFNSHCFNSD-HRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQA----FEAPWPIIQANAIYFSSSILCLC 1251 (1322)
Q Consensus 1180 ~---~l~~lf~~~~~~~~-~~l~~~~f~~~~~k~L~~~~~~~~~~~l~~~l~y----lkS~~~~IR~aA~~fiG~l~~~l 1251 (1322)
. .+-++|-+. ++.. ...-+++.+..|. .|+.+..++...|+..-++| ++.....+-..|+-|+|-+.+.+
T Consensus 593 ~v~D~lm~Lf~r~-les~~~t~~~~dV~~aIs-al~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl 670 (858)
T COG5215 593 DVEDQLMELFIRI-LESTKPTTAFGDVYTAIS-ALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTL 670 (858)
T ss_pred cHHHHHHHHHHHH-HhccCCchhhhHHHHHHH-HHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHh
Confidence 1 122222221 1111 1233455544442 34443334444444444444 45556778889999999998887
Q ss_pred chhhhhhccHHHHHHHHHHHhcc
Q 000737 1252 DDQHILSLFYTQVFGLLVVKLSQ 1274 (1322)
Q Consensus 1252 ~~~~~~~~~~e~l~~~L~~~Ll~ 1274 (1322)
..+.. ...+.+.+.|.. +++
T Consensus 671 ~~df~--~y~d~~ms~LvQ-~ls 690 (858)
T COG5215 671 GTDFN--IYADVLMSSLVQ-CLS 690 (858)
T ss_pred hhhHH--HHHHHHHHHHHH-Hhc
Confidence 76654 344555566655 443
No 42
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.49 E-value=0.0088 Score=74.74 Aligned_cols=278 Identities=20% Similarity=0.227 Sum_probs=180.6
Q ss_pred HHHHHHHHhhhcccCccchHHHHHHHHHHhhcCCchhchH-HHHHHHHHhhcCCCChhHHhhhhhcccCCCc--hhHhhh
Q 000737 981 QTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLL-EQMVEALCRHVSDESPTVRGLCLRGLVQIPS--IHIHQY 1057 (1322)
Q Consensus 981 ~~il~~l~~~l~s~~~~~Ri~a~aflsEll~~~~~~~~ll-~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~--~~v~~~ 1057 (1322)
..++..+...+.+++..--..|+.++..+..++...+.+. ...+..|.+.+..+|..+|.-++.-+.+++. ++...+
T Consensus 118 ~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~ 197 (503)
T PF10508_consen 118 NELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEA 197 (503)
T ss_pred ccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 5677888888999999999999999999998765533332 2246677777777788888777777777764 344344
Q ss_pred HhH--HHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHH--hHHHHhccccccCChhHHHHHH------HHHH
Q 000737 1058 ATQ--VLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILL--NLSVRLRNLQVSMNVKMRRNAF------AAFG 1127 (1322)
Q Consensus 1058 ~~~--lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~--~l~~~lrpffede~~~vR~aAi------~lfG 1127 (1322)
... +++.+++.|++.|.-|.+.++..|+.+.. ...+.. |+. .+..+|-..+.+...+-|..++ ..||
T Consensus 198 ~~~sgll~~ll~eL~~dDiLvqlnalell~~La~--~~~g~~-yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g 274 (503)
T PF10508_consen 198 VVNSGLLDLLLKELDSDDILVQLNALELLSELAE--TPHGLQ-YLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFG 274 (503)
T ss_pred HHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc--ChhHHH-HHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHH
Confidence 433 89999999999777899999999999976 223322 221 1333333333332222243333 5566
Q ss_pred HHhhccCCcchHhHHHHHHHhHHHHHHh-ccCCChhHHHHHHHHHHhhcchhhhhhhhhhccccCCCCCCCChHHHHHHH
Q 000737 1128 ALSNFGVGSQREAFLEQIHAMLPRLILH-IYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDL 1206 (1322)
Q Consensus 1128 ~L~~~~~~~~~~~~~eqv~~~LvpLLlH-L~D~~~~V~~ack~tL~~~a~~L~~~l~~lf~~~~~~~~~~l~~~~f~~~~ 1206 (1322)
.++... ...+. +.+..++..+++ ++..++..+..+-+||+.+|.. .+|
T Consensus 275 ~la~~~----~~~v~-~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst--------------~~G------------ 323 (503)
T PF10508_consen 275 NLARVS----PQEVL-ELYPAFLERLFSMLESQDPTIREVAFDTLGQIGST--------------VEG------------ 323 (503)
T ss_pred HHHhcC----hHHHH-HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCC--------------HHH------------
Confidence 666531 11111 233344444454 4667889999999999998852 223
Q ss_pred HHHHHHhCcchHHHHHHHHHhhhcCCChhhHHHHHHHHHHhcccCc---hhhhhhccHHH--------HHHHHHHHhccC
Q 000737 1207 TRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCD---DQHILSLFYTQ--------VFGLLVVKLSQS 1275 (1322)
Q Consensus 1207 ~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~---~~~~~~~~~e~--------l~~~L~~~Ll~D 1275 (1322)
...|..++++....++.....+.++...++|..|.--++.++..-+ ++++..+...+ ....+.. +.+-
T Consensus 324 ~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~-~~~q 402 (503)
T PF10508_consen 324 KQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMS-LLKQ 402 (503)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHH-HhcC
Confidence 1233467777888888898999999999999999999998864322 22221111111 1114555 7788
Q ss_pred CChHHHHHHHHHHHHHHH
Q 000737 1276 ADAIVRATCSSSLGWLLK 1293 (1322)
Q Consensus 1276 pdp~VR~~Aa~aL~~l~k 1293 (1322)
|=|.+|+.|-.-|.-+..
T Consensus 403 PF~elr~a~~~~l~~l~~ 420 (503)
T PF10508_consen 403 PFPELRCAAYRLLQALAA 420 (503)
T ss_pred CchHHHHHHHHHHHHHhc
Confidence 999999988776665553
No 43
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.36 E-value=0.0004 Score=64.94 Aligned_cols=86 Identities=29% Similarity=0.371 Sum_probs=64.9
Q ss_pred HHHHhhc-CCCChhHHhhhhhcccCCCchhHhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhH
Q 000737 1025 EALCRHV-SDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNL 1103 (1322)
Q Consensus 1025 ~~L~~~l-~D~~~~VR~lalrGLg~l~~~~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l 1103 (1322)
+.|.+.+ +|+++.||..+++.||++.. +.+++.+...+.|.+..|+..|..+|+++.. ....+.+.++
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~----~~~~~~L~~~ 70 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELGD-------PEAIPALIELLKDEDPMVRRAAARALGRIGD----PEAIPALIKL 70 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCTH-------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH----HHTHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCC-------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----HHHHHHHHHH
Confidence 4667777 89999999999999998874 3568888888999999999999999998752 2222333221
Q ss_pred HHHhccccccCChhHHHHHHHHHH
Q 000737 1104 SVRLRNLQVSMNVKMRRNAFAAFG 1127 (1322)
Q Consensus 1104 ~~~lrpffede~~~vR~aAi~lfG 1127 (1322)
+.++++..||.+|+..+|
T Consensus 71 ------l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 71 ------LQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ------HTC-SSHHHHHHHHHHHH
T ss_pred ------HcCCCcHHHHHHHHhhcC
Confidence 345566778999998876
No 44
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.32 E-value=0.012 Score=68.67 Aligned_cols=214 Identities=17% Similarity=0.112 Sum_probs=139.7
Q ss_pred HHHHHHhhcccCChHHHHHHHHHHHHHh-ccCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhh-ccCCcch
Q 000737 1061 VLSVILALLDDLDESVQLTAVSCLLTIL-KSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN-FGVGSQR 1138 (1322)
Q Consensus 1061 lL~all~~L~d~d~~V~leam~~L~~ll-~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~-~~~~~~~ 1138 (1322)
-|...+..+.++....+.+++.++.+++ .+.-.+.+......|+-.+...+.+.+.+=+..|..++|-++= .+.|...
T Consensus 44 ~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 44 KLKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence 3666777788878889999999999988 3333445556667777778888888887778889899988864 3445666
Q ss_pred HhHHHHHHHhHHHHHHhccCCChhHHHHHHHHHHhhcchhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchH
Q 000737 1139 EAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRI 1218 (1322)
Q Consensus 1139 ~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~~~l~~lf~~~~~~~~~~l~~~~f~~~~~k~L~~~~~~~~ 1218 (1322)
+.+.+++...|.+.+. -....+.+|.+|..||+.|+-+-+-...++... -+-+..++....-+-.+.
T Consensus 124 ~ei~~~~~~~L~~~l~-d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~-----------~~~le~if~~~~~~~~~~- 190 (309)
T PF05004_consen 124 EEIFEELKPVLKRILT-DSSASPKARAACLEALAICTFVGGSDEEETEEL-----------MESLESIFLLSILKSDGN- 190 (309)
T ss_pred HHHHHHHHHHHHHHHh-CCccchHHHHHHHHHHHHHHHhhcCChhHHHHH-----------HHHHHHHHHHHhcCcCCC-
Confidence 6666666666655443 223456788999999998875321111100000 011111111111000000
Q ss_pred HHHHHHHHhhhc-CCChhhHHHHHHHHHHhcccCchhhhhhccHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhc
Q 000737 1219 DSYMGSTIQAFE-APWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSIN 1296 (1322)
Q Consensus 1219 ~~~l~~~l~ylk-S~~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~ 1296 (1322)
.+... .|.+.+..+|..--|+++..+++..+. ...+..++.|.. ++..+|..||..|.+++.++++..+
T Consensus 191 -------~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~-~~~~~~~~~l~~-lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 191 -------APVVAAEDDAALVAAALSAWALLLTTLPDSKLE-DLLEEALPALSE-LLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred -------cccccCCCccHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 00112 234678999988889999888876654 224667788999 8889999999999999999998877
No 45
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.29 E-value=0.014 Score=72.74 Aligned_cols=289 Identities=14% Similarity=0.151 Sum_probs=180.2
Q ss_pred HhhhcccCccchHHHHHHHHHHhhcCCchhchHHHHHHHHHhhcCCCChhHHhhhhhcccCCCchhHhhhHhHHHHHHHh
Q 000737 988 TKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILA 1067 (1322)
Q Consensus 988 ~~~l~s~~~~~Ri~a~aflsEll~~~~~~~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~~~v~~~~~~lL~all~ 1067 (1322)
++...|+.=..+.++-...+=||...-+ ++-=+.|.|.+-|+.+|.-|-.+||-.||+++..++ .+.+.|-+-+
T Consensus 76 lKLias~~f~dKRiGYLaamLlLdE~qd---vllLltNslknDL~s~nq~vVglAL~alg~i~s~Em---ardlapeVe~ 149 (866)
T KOG1062|consen 76 LKLIASDNFLDKRIGYLAAMLLLDERQD---LLLLLTNSLKNDLNSSNQYVVGLALCALGNICSPEM---ARDLAPEVER 149 (866)
T ss_pred HHHhcCCCchHHHHHHHHHHHHhccchH---HHHHHHHHHHhhccCCCeeehHHHHHHhhccCCHHH---hHHhhHHHHH
Confidence 4556666655554444444444443322 222258899999999999999999999999998554 3345555556
Q ss_pred hcccCChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHH
Q 000737 1068 LLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHA 1147 (1322)
Q Consensus 1068 ~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~ 1147 (1322)
.+...++-|+..|..++-++.....+ -++ .+....|.++-+-+..|=.++..++-++++.+. +.-.-|++ +..
T Consensus 150 Ll~~~~~~irKKA~Lca~r~irK~P~-l~e----~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~-~~l~~fr~-l~~ 222 (866)
T KOG1062|consen 150 LLQHRDPYIRKKAALCAVRFIRKVPD-LVE----HFVIAFRKLLCEKHHGVLIAGLHLITELCKISP-DALSYFRD-LVP 222 (866)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHcCch-HHH----HhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCH-HHHHHHHH-HHH
Confidence 66667889999999999999976532 222 333455677777888899999999999988432 23344444 445
Q ss_pred hHHHHHHhccC----CChhHHHHHHHHHHhhcchhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHH---hCcchHHH
Q 000737 1148 MLPRLILHIYD----DDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQ---HFPSRIDS 1220 (1322)
Q Consensus 1148 ~LvpLLlHL~D----~~~~V~~ack~tL~~~a~~L~~~l~~lf~~~~~~~~~~l~~~~f~~~~~k~L~~---~~~~~~~~ 1220 (1322)
.+|..|-.+.. ++=+|. +.++|||...+-.++.- ++.| ..++-+.++|+...... ...+.-+.
T Consensus 223 ~lV~iLk~l~~~~yspeydv~-------gi~dPFLQi~iLrlLri--LGq~-d~daSd~M~DiLaqvatntdsskN~GnA 292 (866)
T KOG1062|consen 223 SLVKILKQLTNSGYSPEYDVH-------GISDPFLQIRILRLLRI--LGQN-DADASDLMNDILAQVATNTDSSKNAGNA 292 (866)
T ss_pred HHHHHHHHHhcCCCCCccCcc-------CCCchHHHHHHHHHHHH--hcCC-CccHHHHHHHHHHHHHhcccccccchhH
Confidence 55554443332 222343 46789998844333332 2333 24455566666555543 22333333
Q ss_pred HHHHHHh--hhcCCChhhHHHHHHHHHHhcccCchhhhhhc-----------cHHH---HHHHHHHHhccCCChHHHHHH
Q 000737 1221 YMGSTIQ--AFEAPWPIIQANAIYFSSSILCLCDDQHILSL-----------FYTQ---VFGLLVVKLSQSADAIVRATC 1284 (1322)
Q Consensus 1221 ~l~~~l~--ylkS~~~~IR~aA~~fiG~l~~~l~~~~~~~~-----------~~e~---l~~~L~~~Ll~Dpdp~VR~~A 1284 (1322)
.+-+|+. |-=.|.+.+|-.|+-.+|.++.+-+... .++ |..- =-.+..+ .++|||+++|++|
T Consensus 293 ILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~Ni-rYvaLn~L~r~V~~d~~avqrHr~tIle-CL~DpD~SIkrra 370 (866)
T KOG1062|consen 293 ILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNI-RYVALNMLLRVVQQDPTAVQRHRSTILE-CLKDPDVSIKRRA 370 (866)
T ss_pred HHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccce-eeeehhhHHhhhcCCcHHHHHHHHHHHH-HhcCCcHHHHHHH
Confidence 4444444 2333556789999998888875432211 111 1111 1234667 8999999999999
Q ss_pred HHHHHHHHHHhcccccc
Q 000737 1285 SSSLGWLLKSINSHSWR 1301 (1322)
Q Consensus 1285 a~aL~~l~k~~~~~~~~ 1301 (1322)
-+=+..|...+|....-
T Consensus 371 lELs~~lvn~~Nv~~mv 387 (866)
T KOG1062|consen 371 LELSYALVNESNVRVMV 387 (866)
T ss_pred HHHHHHHhccccHHHHH
Confidence 99999999888876543
No 46
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.25 E-value=0.88 Score=55.30 Aligned_cols=245 Identities=13% Similarity=0.131 Sum_probs=154.9
Q ss_pred chHHHHHHHHHhhcCCCChhHHhhhhhcccCCCc---hhHhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcc
Q 000737 1018 SLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS---IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKD 1094 (1322)
Q Consensus 1018 ~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~---~~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~ 1094 (1322)
...++.+..|...|+.+....|-.|+|-|.+++. +++.--.+. ++.+ ..|.+..|..=|+.+|-+-. .++
T Consensus 299 ~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~e-vEsL---Isd~Nr~IstyAITtLLKTG---t~e 371 (898)
T COG5240 299 QFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKE-VESL---ISDENRTISTYAITTLLKTG---TEE 371 (898)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChh-HHHH---hhcccccchHHHHHHHHHcC---chh
Confidence 5667788999999999999999999999999985 444221111 2222 23345556665555555443 334
Q ss_pred cchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHHhccCCChhHHHHHHHHHHhh
Q 000737 1095 AVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQV 1174 (1322)
Q Consensus 1095 ~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~ 1174 (1322)
.+. .+...|..|..|.++..+.-+|.+...|+-.-..+ +. -.+..|...|+. +..-.-.++.-+|+-..
T Consensus 372 ~id----rLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k-~~----s~l~FL~~~L~~--eGg~eFK~~~Vdaisd~ 440 (898)
T COG5240 372 TID----RLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSK-KL----SYLDFLGSSLLQ--EGGLEFKKYMVDAISDA 440 (898)
T ss_pred hHH----HHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHH-HH----HHHHHHHHHHHh--cccchHHHHHHHHHHHH
Confidence 443 56667788999999999999999999998622211 12 233444444432 44556666777776665
Q ss_pred cchh-hh--hhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCc-----chHHHHHHHHHhhhcCCChhhHHHHHHHHHH
Q 000737 1175 APFM-EI--GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFP-----SRIDSYMGSTIQAFEAPWPIIQANAIYFSSS 1246 (1322)
Q Consensus 1175 a~~L-~~--~l~~lf~~~~~~~~~~l~~~~f~~~~~k~L~~~~~-----~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~ 1246 (1322)
-.+- .. ..-+.++.. .++ -.|.+..-+|...|.++-| +++-.++- .-+-=....||.||+.-+..
T Consensus 441 ~~~~p~skEraLe~LC~f-IED---cey~~I~vrIL~iLG~EgP~a~~P~~yvrhIy---NR~iLEN~ivRsaAv~aLsk 513 (898)
T COG5240 441 MENDPDSKERALEVLCTF-IED---CEYHQITVRILGILGREGPRAKTPGKYVRHIY---NRLILENNIVRSAAVQALSK 513 (898)
T ss_pred HhhCchHHHHHHHHHHHH-Hhh---cchhHHHHHHHHHhcccCCCCCCcchHHHHHH---HHHHHhhhHHHHHHHHHHHH
Confidence 5443 22 223334442 222 3456677777777776554 44333333 33333456799999977766
Q ss_pred hcccCchhhhhhccHHHHHHHHHHHhccCCChHHHHHHHHHHHHHH
Q 000737 1247 ILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1292 (1322)
Q Consensus 1247 l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1292 (1322)
+.-+..+- ...+.+..+|.. .+.|.|-.||.+|+-++..+.
T Consensus 514 f~ln~~d~----~~~~sv~~~lkR-clnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 514 FALNISDV----VSPQSVENALKR-CLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred hccCcccc----ccHHHHHHHHHH-HhhcccHHHHHHHHHHHHhhh
Confidence 55433222 124567777876 899999999999999998876
No 47
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.17 E-value=0.0028 Score=59.19 Aligned_cols=85 Identities=20% Similarity=0.276 Sum_probs=62.4
Q ss_pred HHHHhc-cCCChhHHHHHHHHHHhhcchhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhh
Q 000737 1151 RLILHI-YDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAF 1229 (1322)
Q Consensus 1151 pLLlHL-~D~~~~V~~ack~tL~~~a~~L~~~l~~lf~~~~~~~~~~l~~~~f~~~~~k~L~~~~~~~~~~~l~~~l~yl 1229 (1322)
.|+-.| +|+++.||..+..+|+.++. ++. +...+..+
T Consensus 3 ~L~~~l~~~~~~~vr~~a~~~L~~~~~-----------------------~~~-------------------~~~L~~~l 40 (88)
T PF13646_consen 3 ALLQLLQNDPDPQVRAEAARALGELGD-----------------------PEA-------------------IPALIELL 40 (88)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHCCTH-----------------------HHH-------------------HHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCC-----------------------HhH-------------------HHHHHHHH
Confidence 444567 89999999999888885321 112 22234466
Q ss_pred cCCChhhHHHHHHHHHHhcccCchhhhhhccHHHHHHHHHHHhccCCChHHHHHHHHHHH
Q 000737 1230 EAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLG 1289 (1322)
Q Consensus 1230 kS~~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~ 1289 (1322)
+|+.+.||.+|+..+|.+. .+.....|...+.+|++..||..|++|||
T Consensus 41 ~d~~~~vr~~a~~aL~~i~------------~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 41 KDEDPMVRRAAARALGRIG------------DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp TSSSHHHHHHHHHHHHCCH------------HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhC------------CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 8999999999999999763 35566777775667789999999999986
No 48
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.13 E-value=0.0056 Score=65.78 Aligned_cols=113 Identities=25% Similarity=0.243 Sum_probs=93.1
Q ss_pred cchHHHHHHHHHHhhcCCchhchHHHHHHHHHhhcCCCChhHHhhhhhcccCCCchhHhhhHhHHHHHHHhhcccCChHH
Q 000737 997 FQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESV 1076 (1322)
Q Consensus 997 ~~Ri~a~aflsEll~~~~~~~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~~~v~~~~~~lL~all~~L~d~d~~V 1076 (1322)
.-|..++..++.|.-.. ..+++..++.+...++|++|.||+.|+..|.++..++.-+..++++..++..+.|.|++|
T Consensus 3 ~vR~n~i~~l~DL~~r~---~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~I 79 (178)
T PF12717_consen 3 SVRNNAIIALGDLCIRY---PNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEI 79 (178)
T ss_pred HHHHHHHHHHHHHHHhC---cHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHH
Confidence 34777888888776543 245677888999999999999999999999999876666667788889999999999999
Q ss_pred HHHHHHHHHHHhccCCcccchhhHHhHHHHhccccc
Q 000737 1077 QLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQV 1112 (1322)
Q Consensus 1077 ~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffe 1112 (1322)
+..|-..+..+....++..+...++.+..++-..-+
T Consensus 80 r~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~ 115 (178)
T PF12717_consen 80 RSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYE 115 (178)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccc
Confidence 999999999999987777788888888777765443
No 49
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.10 E-value=0.042 Score=69.98 Aligned_cols=296 Identities=15% Similarity=0.130 Sum_probs=172.2
Q ss_pred HHHhhhCChhHHHHHHHHHhhhcccCccchHHHHHHHHHHhhcCCchhchHHHHHHHHHhhcCCCChhHHhhhhhcccCC
Q 000737 970 GCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQI 1049 (1322)
Q Consensus 970 r~l~~~~~~~~~~il~~l~~~l~s~~~~~Ri~a~aflsEll~~~~~~~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l 1049 (1322)
.-.++.+|....-.++.+.+-++++++.-|..|+-|++-+ ....+++.+++.+.+.+.|+++-||+-|.-+++++
T Consensus 80 ~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l-----~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kl 154 (757)
T COG5096 80 ERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLL-----RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKL 154 (757)
T ss_pred HHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhc-----ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHH
Confidence 3446677777778888888888888888888888887753 22366777888888888888888888888888877
Q ss_pred CchhHhhhHhH-HHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCChh-HHHHHHHHHH
Q 000737 1050 PSIHIHQYATQ-VLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVK-MRRNAFAAFG 1127 (1322)
Q Consensus 1050 ~~~~v~~~~~~-lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~-vR~aAi~lfG 1127 (1322)
=.-+-+.+... ....+-..+.|.|+.|+..|+.+|..+-+. ....++..++.++-.+--..... .+..=...++
T Consensus 155 y~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e----~a~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~le 230 (757)
T COG5096 155 YRLDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE----LAHGYSLEVILRIPQLDLLSLSVSTEWLLLIILE 230 (757)
T ss_pred HhcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh----hhhhHHHHHHHHhhhccchhhhhhHHHHHHHHHH
Confidence 54122223333 455556666677888888888888877654 44566666666554433111221 3555556666
Q ss_pred HHhhccCCcchHhHHHHHHHhHHHHHHhccCCChhHHHHHHHHHHhhcchhhh-hhhhhhcccc--CCCCCCCChHHHHH
Q 000737 1128 ALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNSHC--FNSDHRSDYETFVR 1204 (1322)
Q Consensus 1128 ~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~~-~l~~lf~~~~--~~~~~~l~~~~f~~ 1204 (1322)
.|..........+ +. ..-.+..|++-.|+.|...+-..+.++.+++.. .......... +-+....--..++.
T Consensus 231 ~L~~~~~~~~~s~---~~--~~~~~~~~~~~~n~~vl~~av~~i~~l~~~~~~~~~~~~~~~~l~~Ll~~~~~~~~~vl~ 305 (757)
T COG5096 231 VLTERVPTTPDSA---ED--FEERLSPPLQHNNAEVLLIAVKVILRLLVFLPSNNLFLISSPPLVTLLAKPESLIQYVLR 305 (757)
T ss_pred HHHccCCCCCCcH---HH--HHHhccchhhhCcHHHHHHHHHHHHHHhhhhccccHHHhhccHHHHHHcCCHHHHHHHHH
Confidence 6665322111111 11 112233467778999999999999999888766 4322111110 00000000022444
Q ss_pred HHHHHHHHhCcchHHHHHHHHHhhhcCCChhhHHHHHHHHHHhccc---CchhhhhhccHHHHHHHHHHHhccC--CChH
Q 000737 1205 DLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCL---CDDQHILSLFYTQVFGLLVVKLSQS--ADAI 1279 (1322)
Q Consensus 1205 ~~~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~---l~~~~~~~~~~e~l~~~L~~~Ll~D--pdp~ 1279 (1322)
..-....+.++..++.-.....-.+++| +..+.-.+.+. -+.+.. .++...++. .-.+ .|+.
T Consensus 306 ~~~~~~l~~~~k~~~~~~~~f~~~~~~~-------i~~~lek~~~~t~l~~~~n~-----~~~L~e~~~-y~~~~~~~~e 372 (757)
T COG5096 306 RNIQIDLEVCSKLLDKVKKLFLIEYNDD-------IYIKLEKLDQLTRLADDQNL-----SQILLELIY-YIAENHIDAE 372 (757)
T ss_pred HhhHHHHHhhHHHHHHHhhhhhhhccch-------HHHHHHHHHHHhhcCCchhh-----HHHHHHHHH-HHhhccccHH
Confidence 5555555555555555444433333433 33333333321 112222 223333444 2445 8888
Q ss_pred HHHHHHHHHHHHH
Q 000737 1280 VRATCSSSLGWLL 1292 (1322)
Q Consensus 1280 VR~~Aa~aL~~l~ 1292 (1322)
+-..|-++||.+.
T Consensus 373 ~v~~~ik~lgd~~ 385 (757)
T COG5096 373 MVSEAIKALGDLA 385 (757)
T ss_pred HHHHHHHHHHhhh
Confidence 8888888888876
No 50
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.06 E-value=0.0011 Score=56.58 Aligned_cols=55 Identities=24% Similarity=0.320 Sum_probs=44.8
Q ss_pred hhhHHHHHHHHHHhcccCchhhhhhccHHHHHHHHHHHhccCCChHHHHHHHHHHHHH
Q 000737 1234 PIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWL 1291 (1322)
Q Consensus 1234 ~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l 1291 (1322)
+.+|.+|++.+|.+....+.... .....++..|.. +++|+++.||..|+.|||.|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~--~~~~~~~~~L~~-~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQ--PYLPELLPALIP-LLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHH--HHHHHHHHHHHH-HTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHH--HHHHHHHHHHHH-HHcCCCHHHHHHHHHHHhcC
Confidence 46999999999997765553332 246788999998 89999999999999999865
No 51
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.06 E-value=0.0021 Score=61.79 Aligned_cols=87 Identities=18% Similarity=0.178 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHHhc
Q 000737 1077 QLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHI 1156 (1322)
Q Consensus 1077 ~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL 1156 (1322)
+..+|-+|+.+--.++.. +..++..|...+...|+|++..||..|.+.+..+++..+ ...-+++++|+..|..++
T Consensus 3 R~ggli~Laa~ai~l~~~-~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~-~~~l~~f~~IF~~L~kl~--- 77 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKD-ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVAR-GEILPYFNEIFDALCKLS--- 77 (97)
T ss_pred hhHHHHHHHHHHHHchHh-HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH---
Confidence 346777888887777654 889999999999999999999999999999999999654 345667888888887764
Q ss_pred cCCChhHHHHHH
Q 000737 1157 YDDDLSVRQACR 1168 (1322)
Q Consensus 1157 ~D~~~~V~~ack 1168 (1322)
.|++++|+.+|.
T Consensus 78 ~D~d~~Vr~~a~ 89 (97)
T PF12755_consen 78 ADPDENVRSAAE 89 (97)
T ss_pred cCCchhHHHHHH
Confidence 699999999884
No 52
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=96.93 E-value=0.019 Score=74.19 Aligned_cols=150 Identities=12% Similarity=0.170 Sum_probs=102.2
Q ss_pred ccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhc-cCCcchHhHHHHHHHhHHHHHHhccCCChhHHHHHHHHHH
Q 000737 1094 DAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNF-GVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLK 1172 (1322)
Q Consensus 1094 ~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~-~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~ 1172 (1322)
.+...+...+......|..|+.+-||.+-..-++.|+.| +..+.-+.+. .=|+..|+|.+...|.|==+++-
T Consensus 570 ~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iL-------shLiTfLNDkDw~LR~aFfdsI~ 642 (1431)
T KOG1240|consen 570 TELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVIL-------SHLITFLNDKDWRLRGAFFDSIV 642 (1431)
T ss_pred hHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchH-------HHHHHHhcCccHHHHHHHHhhcc
Confidence 344555556666667889999999999999999999985 4433333322 22445789999999999999999
Q ss_pred hhcchhhh-hhhhhh----ccccCCCCCCCChHHHHHHHHHHHHH-hC--cchHHHHHHHHHhhhcCCChhhHHHHHHHH
Q 000737 1173 QVAPFMEI-GVYGIF----NSHCFNSDHRSDYETFVRDLTRQFVQ-HF--PSRIDSYMGSTIQAFEAPWPIIQANAIYFS 1244 (1322)
Q Consensus 1173 ~~a~~L~~-~l~~lf----~~~~~~~~~~l~~~~f~~~~~k~L~~-~~--~~~~~~~l~~~l~ylkS~~~~IR~aA~~fi 1244 (1322)
-++.++|| .+.+.+ +.. +.|++..=-...+.- .+.|.+ .+ .-.+-.++.....|+=-|.--||++|+.||
T Consensus 643 gvsi~VG~rs~seyllPLl~Q~-ltD~EE~Viv~aL~~-ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI 720 (1431)
T KOG1240|consen 643 GVSIFVGWRSVSEYLLPLLQQG-LTDGEEAVIVSALGS-LSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGII 720 (1431)
T ss_pred ceEEEEeeeeHHHHHHHHHHHh-ccCcchhhHHHHHHH-HHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHH
Confidence 99999999 455433 332 455522111112222 222322 22 335666888899999999999999999999
Q ss_pred HHhcccCc
Q 000737 1245 SSILCLCD 1252 (1322)
Q Consensus 1245 G~l~~~l~ 1252 (1322)
-.+.+.+.
T Consensus 721 ~~~~~~ls 728 (1431)
T KOG1240|consen 721 AAIARQLS 728 (1431)
T ss_pred HHHHhhhh
Confidence 88876554
No 53
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.91 E-value=0.11 Score=64.25 Aligned_cols=201 Identities=14% Similarity=0.197 Sum_probs=124.9
Q ss_pred chhhHHHhHHHHHHHHhhh-CChhHHHHHHHHHhhhcccCccchHHHHHH-HHHHhhcCCchhchHHHHHHHHHhhcCCC
Q 000737 957 DKEKWINLIGDVAGCVSIK-RPKEVQTICLILTKSINRQQRFQREAAAAA-LSEFVRYSGGFDSLLEQMVEALCRHVSDE 1034 (1322)
Q Consensus 957 ~~~~~~~GV~lLar~l~~~-~~~~~~~il~~l~~~l~s~~~~~Ri~a~af-lsEll~~~~~~~~ll~~~~~~L~~~l~D~ 1034 (1322)
+..-|.-||.+ .+++.. .|..-+.+..-+...|+|.-+--|.-|+.. |--|+++|.. ++..++.|.+.|.||
T Consensus 120 S~n~ye~giAL--~GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA----lr~~FprL~EkLeDp 193 (877)
T KOG1059|consen 120 SSNVYEVGLAL--SGLSCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA----LRPCFPRLVEKLEDP 193 (877)
T ss_pred cCccchhhhee--cccccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh----HhhhHHHHHHhccCC
Confidence 56677777766 444433 456778888888899999888888777644 4567887743 466788999999999
Q ss_pred ChhHHhhhhhcccCCCch--------------------------hH-----------hhhHhHHHHHHHhhcccCC-hHH
Q 000737 1035 SPTVRGLCLRGLVQIPSI--------------------------HI-----------HQYATQVLSVILALLDDLD-ESV 1076 (1322)
Q Consensus 1035 ~~~VR~lalrGLg~l~~~--------------------------~v-----------~~~~~~lL~all~~L~d~d-~~V 1076 (1322)
+|.|..+|.--+-.+|.. |+ -++.+-+++.+.+.+..+. -.+
T Consensus 194 Dp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSL 273 (877)
T KOG1059|consen 194 DPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSL 273 (877)
T ss_pred CchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHH
Confidence 999998865444333310 00 1233445555555554432 124
Q ss_pred HHHHHHHHHHH--hccCCcccchhhHHhH-HHHhccccccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHH
Q 000737 1077 QLTAVSCLLTI--LKSSSKDAVEPILLNL-SVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLI 1153 (1322)
Q Consensus 1077 ~leam~~L~~l--l~~l~~~~~~~~l~~l-~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLL 1153 (1322)
..|.++++-.. +..+. ++..+ +++ +.+||-|++|.++.+|..+.-++|.+++. .-+.....++-|+++
T Consensus 274 lYECvNTVVa~s~s~g~~-d~~as--iqLCvqKLr~fiedsDqNLKYlgLlam~KI~kt-Hp~~Vqa~kdlIlrc----- 344 (877)
T KOG1059|consen 274 LYECVNTVVAVSMSSGMS-DHSAS--IQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKT-HPKAVQAHKDLILRC----- 344 (877)
T ss_pred HHHHHHHheeehhccCCC-CcHHH--HHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhh-CHHHHHHhHHHHHHH-----
Confidence 44444443322 22221 22222 233 36799999999999999999999999982 222333444444443
Q ss_pred HhccCCChhHHHHHHHHHHhh
Q 000737 1154 LHIYDDDLSVRQACRNTLKQV 1174 (1322)
Q Consensus 1154 lHL~D~~~~V~~ack~tL~~~ 1174 (1322)
|.|.++++|-.+-+=|..+
T Consensus 345 --L~DkD~SIRlrALdLl~gm 363 (877)
T KOG1059|consen 345 --LDDKDESIRLRALDLLYGM 363 (877)
T ss_pred --hccCCchhHHHHHHHHHHH
Confidence 4567777775555444333
No 54
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.80 E-value=0.002 Score=54.96 Aligned_cols=52 Identities=27% Similarity=0.404 Sum_probs=47.1
Q ss_pred hhHHhhhhhcccCCCc---hhHhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHH
Q 000737 1036 PTVRGLCLRGLVQIPS---IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTI 1087 (1322)
Q Consensus 1036 ~~VR~lalrGLg~l~~---~~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~l 1087 (1322)
|.||..|+.+||+++. +....+.+.+++.++..|.|.++.|+..|+.+|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 5799999999999874 677889999999999999999899999999999875
No 55
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=96.80 E-value=0.011 Score=66.99 Aligned_cols=258 Identities=15% Similarity=0.141 Sum_probs=143.0
Q ss_pred HHHHHHHHHHhhcCCc-hhchHHH-HHHHHHhhcCCCChhHHhhhhhcccCCCc--hhHhhh------------------
Q 000737 1000 EAAAAALSEFVRYSGG-FDSLLEQ-MVEALCRHVSDESPTVRGLCLRGLVQIPS--IHIHQY------------------ 1057 (1322)
Q Consensus 1000 i~a~aflsEll~~~~~-~~~ll~~-~~~~L~~~l~D~~~~VR~lalrGLg~l~~--~~v~~~------------------ 1057 (1322)
.-|+=+++..-.+... ...+.+. .++.+.+.|.+++..||.-++=+|||++- +..+-|
T Consensus 133 fEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~ 212 (526)
T COG5064 133 FEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSA 212 (526)
T ss_pred HHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhcc
Confidence 3444455554443222 2233333 77889999999999999999999999974 111111
Q ss_pred ----------------------------HhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhcc
Q 000737 1058 ----------------------------ATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRN 1109 (1322)
Q Consensus 1058 ----------------------------~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrp 1109 (1322)
..+.+|.+.+.++..|++|+..|+.+++=+.+.-.+..-.-+=..+..||.-
T Consensus 213 ~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvE 292 (526)
T COG5064 213 IHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVE 292 (526)
T ss_pred chHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHH
Confidence 1334555555555555556666666665555433221111111235667788
Q ss_pred ccccCChhHHHHHHHHHHHHhhccCCcchHhHH-HHHHHhHHHHHHhccCCChhHHHHHHHHHHhhcchhhhhhhhhhcc
Q 000737 1110 LQVSMNVKMRRNAFAAFGALSNFGVGSQREAFL-EQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNS 1188 (1322)
Q Consensus 1110 ffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~-eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~~~l~~lf~~ 1188 (1322)
++.+|+..|..-|++..|.+.... ...-..+. --++..+.|||-| +-..+|+.+..|+..+..==--...++...
T Consensus 293 lLs~~sa~iqtPalR~vGNIVTG~-D~QTqviI~~G~L~a~~~lLs~---~ke~irKEaCWTiSNITAGnteqiqavid~ 368 (526)
T COG5064 293 LLSHESAKIQTPALRSVGNIVTGS-DDQTQVIINCGALKAFRSLLSS---PKENIRKEACWTISNITAGNTEQIQAVIDA 368 (526)
T ss_pred HhcCccccccCHHHHhhcCeeecC-ccceehheecccHHHHHHHhcC---hhhhhhhhhheeecccccCCHHHHHHHHhc
Confidence 899999999999999999988621 11111111 1234555666444 444899988877766442000022222211
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhhHHHHHHHHHHhcc---cCchhhhhhccHHHHH
Q 000737 1189 HCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILC---LCDDQHILSLFYTQVF 1265 (1322)
Q Consensus 1189 ~~~~~~~~l~~~~f~~~~~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~---~l~~~~~~~~~~e~l~ 1265 (1322)
.. -|.. +..+.+-.-.+|+.|+|.|.-... .. ++.+..+=....+
T Consensus 369 nl-----------------------iPpL--------i~lls~ae~k~kKEACWAisNatsgg~~~-PD~iryLv~qG~I 416 (526)
T COG5064 369 NL-----------------------IPPL--------IHLLSSAEYKIKKEACWAISNATSGGLNR-PDIIRYLVSQGFI 416 (526)
T ss_pred cc-----------------------chHH--------HHHHHHHHHHHHHHHHHHHHhhhccccCC-chHHHHHHHccch
Confidence 10 0111 222333344588889998876543 23 3444443334466
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHHHH
Q 000737 1266 GLLVVKLSQSADAIVRATCSSSLGWLLKS 1294 (1322)
Q Consensus 1266 ~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~ 1294 (1322)
+.|.. |+.=.|-.|-..|..++..+.|.
T Consensus 417 kpLc~-~L~~~dNkiiev~LD~~eniLk~ 444 (526)
T COG5064 417 KPLCD-LLDVVDNKIIEVALDAIENILKV 444 (526)
T ss_pred hHHHH-HHhccCccchhhhHHHHHHHHhh
Confidence 77777 66655555666667777766654
No 56
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=96.75 E-value=0.016 Score=74.20 Aligned_cols=247 Identities=17% Similarity=0.188 Sum_probs=165.5
Q ss_pred chHHHHHHHHHHhhcCCchhchHHHHHHHHHhhcCCCChhHHhhhhhcccCCCc-hhHhhhHhHHHHHHHhhcccCChHH
Q 000737 998 QREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS-IHIHQYATQVLSVILALLDDLDESV 1076 (1322)
Q Consensus 998 ~Ri~a~aflsEll~~~~~~~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~-~~v~~~~~~lL~all~~L~d~d~~V 1076 (1322)
-|..|...|.....+..+ ..+-..+.+...+.-+|.+|.||..+.+-+|+++. -.-..-...+++-..+...|..+.|
T Consensus 214 sr~sacglf~~~~~~~~~-~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsV 292 (759)
T KOG0211|consen 214 SRLSACGLFGKLYVSLPD-DAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSV 292 (759)
T ss_pred cchhhhhhhHHhccCCCh-HHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhH
Confidence 467777888877665442 22333455666667799999999999999999986 1113345566777777777767889
Q ss_pred HHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHHhc
Q 000737 1077 QLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHI 1156 (1322)
Q Consensus 1077 ~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL 1156 (1322)
+..|+.++..+++.++..+ +.-..+...++.+.+|.+..+|......|-++.+..+...-.+ ....|...-+
T Consensus 293 r~~a~~~~~~l~~l~~~~~--d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~------~~~~~~~~l~ 364 (759)
T KOG0211|consen 293 REAAVESLVSLLDLLDDDD--DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRT------QLVPPVSNLL 364 (759)
T ss_pred HHHHHHHHHHHHHhcCCch--hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcc------cchhhHHHHh
Confidence 9999999999999988773 4455666777889999999999999999999887432211111 2445666678
Q ss_pred cCCChhHHHHHHHHHHhhcchhhh-hhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChh
Q 000737 1157 YDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPI 1235 (1322)
Q Consensus 1157 ~D~~~~V~~ack~tL~~~a~~L~~-~l~~lf~~~~~~~~~~l~~~~f~~~~~k~L~~~~~~~~~~~l~~~l~ylkS~~~~ 1235 (1322)
+|+..+++.+...--...+.+++- ....+.. .+ .+-....+.-++..+
T Consensus 365 ~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~--------------------~~-----------ilp~~~~lv~d~~~~ 413 (759)
T KOG0211|consen 365 KDEEWEVRYAIAKKVQKLACYLNASCYPNIPD--------------------SS-----------ILPEVQVLVLDNALH 413 (759)
T ss_pred cchhhhhhHHhhcchHHHhhhcCcccccccch--------------------hh-----------hhHHHHHHHhcccch
Confidence 888888887654333332222211 1111111 11 122334466778899
Q ss_pred hHHHHHHHHHHhcccCchhhhhhccHHHHHHHHHHHhccCCChHHHHHHHHHHH
Q 000737 1236 IQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLG 1289 (1322)
Q Consensus 1236 IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~ 1289 (1322)
+|.+.+.++..+.-.++.+. ..+.+...+.. +++|.+|.||-.-...+.
T Consensus 414 vr~a~a~~~~~~~p~~~k~~----ti~~llp~~~~-~l~de~~~V~lnli~~ls 462 (759)
T KOG0211|consen 414 VRSALASVITGLSPILPKER----TISELLPLLIG-NLKDEDPIVRLNLIDKLS 462 (759)
T ss_pred HHHHHhccccccCccCCcCc----CccccChhhhh-hcchhhHHHHHhhHHHHH
Confidence 99999988877755444222 24556667777 899999999987775543
No 57
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.55 E-value=0.12 Score=60.17 Aligned_cols=131 Identities=24% Similarity=0.236 Sum_probs=88.1
Q ss_pred hHHHHHHHH-HhhcCCCChhHHhhhhhcccCCCc-hhHhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccc
Q 000737 1019 LLEQMVEAL-CRHVSDESPTVRGLCLRGLVQIPS-IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAV 1096 (1322)
Q Consensus 1019 ll~~~~~~L-~~~l~D~~~~VR~lalrGLg~l~~-~~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~ 1096 (1322)
.++.+++.| .-++..+++.||..|++.||=.+. ++ +...+-++-++..++..++.|...|+.++-+++-.=+...+
T Consensus 23 ~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~--~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 23 SLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK--ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 334544444 468899999999999999996654 22 22334455566666445788999999999999743222222
Q ss_pred h--------hhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHHh
Q 000737 1097 E--------PILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILH 1155 (1322)
Q Consensus 1097 ~--------~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlH 1155 (1322)
. .....+..-+..+++++++++|+.|...|..|.-.+.-.. ...++..|+-+.++
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~ 163 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFN 163 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcC
Confidence 2 2234566667889999999999999999999987443222 34556666555553
No 58
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.51 E-value=0.077 Score=57.02 Aligned_cols=91 Identities=18% Similarity=0.184 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHH
Q 000737 1074 ESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLI 1153 (1322)
Q Consensus 1074 ~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLL 1153 (1322)
+.|+..++.+++.+.-.-+ .-+.++. ..+...+.|+++.||..|+..+-+|...+ .-.++.+++..+ +
T Consensus 2 ~~vR~n~i~~l~DL~~r~~-~~ve~~~----~~l~~~L~D~~~~VR~~al~~Ls~Li~~d----~ik~k~~l~~~~---l 69 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYP-NLVEPYL----PNLYKCLRDEDPLVRKTALLVLSHLILED----MIKVKGQLFSRI---L 69 (178)
T ss_pred HHHHHHHHHHHHHHHHhCc-HHHHhHH----HHHHHHHCCCCHHHHHHHHHHHHHHHHcC----ceeehhhhhHHH---H
Confidence 5677888888888886542 3344444 44556778999999999999999999732 223344443333 3
Q ss_pred HhccCCChhHHHHHHHHHHhhcc
Q 000737 1154 LHIYDDDLSVRQACRNTLKQVAP 1176 (1322)
Q Consensus 1154 lHL~D~~~~V~~ack~tL~~~a~ 1176 (1322)
.-+.|+|++|+..|+..|..++.
T Consensus 70 ~~l~D~~~~Ir~~A~~~~~e~~~ 92 (178)
T PF12717_consen 70 KLLVDENPEIRSLARSFFSELLK 92 (178)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHH
Confidence 34489999999999988887553
No 59
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.49 E-value=0.0033 Score=60.46 Aligned_cols=86 Identities=24% Similarity=0.290 Sum_probs=73.2
Q ss_pred HHhhhhhcccCCCc---hhHhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccC
Q 000737 1038 VRGLCLRGLVQIPS---IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSM 1114 (1322)
Q Consensus 1038 VR~lalrGLg~l~~---~~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede 1114 (1322)
.|+-++-||+.++. +.+.+|.+.+++.++.++.|.|..|+.-|+.+|-+|...... .+-+++.+|-..+..++.|.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~-~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARG-EILPYFNEIFDALCKLSADP 80 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCC
Confidence 36777778887653 668999999999999999999999999999999999877654 44458889999999999999
Q ss_pred ChhHHHHHHH
Q 000737 1115 NVKMRRNAFA 1124 (1322)
Q Consensus 1115 ~~~vR~aAi~ 1124 (1322)
++.||.+|-.
T Consensus 81 d~~Vr~~a~~ 90 (97)
T PF12755_consen 81 DENVRSAAEL 90 (97)
T ss_pred chhHHHHHHH
Confidence 9999999843
No 60
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.086 Score=68.05 Aligned_cols=265 Identities=17% Similarity=0.177 Sum_probs=159.7
Q ss_pred chHHHHHHHHHhhcCCCChhHHhhhhhcccCCCchhHhhhHhHHHHHHHhhcccCC-hHHHHHHHHHHHHHhccCCcccc
Q 000737 1018 SLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLD-ESVQLTAVSCLLTILKSSSKDAV 1096 (1322)
Q Consensus 1018 ~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~~~v~~~~~~lL~all~~L~d~d-~~V~leam~~L~~ll~~l~~~~~ 1096 (1322)
.-+|.++..|..+++|.+..||+-|.+|+|.++..--..+..+++...++.+-..+ +..-..||.+|..+-.. .-..
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~r--GlLl 414 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALR--GLLL 414 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhc--CCcc
Confidence 44567889999999999999999999999999863335677889999998555544 56888999999988642 0111
Q ss_pred hhhHHhHHHHh--ccccccCC------hhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHHhccCCChhHHHHHH
Q 000737 1097 EPILLNLSVRL--RNLQVSMN------VKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACR 1168 (1322)
Q Consensus 1097 ~~~l~~l~~~l--rpffede~------~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack 1168 (1322)
.+.+..+..-| .=+|++.. ..||-+|-.+.=++++.-.....+||.+++..+|+-- -+=|++..+|.||-
T Consensus 415 ps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~--AlFDrevncRRAAs 492 (1133)
T KOG1943|consen 415 PSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIV--ALFDREVNCRRAAS 492 (1133)
T ss_pred hHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHH--HhcCchhhHhHHHH
Confidence 11111111111 12344433 5799999988888877433344566666555555433 34599999999999
Q ss_pred HHHHhhc----ch-hhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCC-hhhHHHHHH
Q 000737 1169 NTLKQVA----PF-MEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPW-PIIQANAIY 1242 (1322)
Q Consensus 1169 ~tL~~~a----~~-L~~~l~~lf~~~~~~~~~~l~~~~f~~~~~k~L~~~~~~~~~~~l~~~l~ylkS~~-~~IR~aA~~ 1242 (1322)
.||.... ++ -|-.+-...+=...+. +.. -+.++|..+ .+|++....++...+.-==+.| +.||.-|++
T Consensus 493 AAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~-rsN----cy~~l~~~i-a~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~ 566 (1133)
T KOG1943|consen 493 AALQENVGRQGNFPHGISLISTIDYFSVTN-RSN----CYLDLCVSI-AEFSGYREPVFNHLLTKKVCHWDVKIRELAAY 566 (1133)
T ss_pred HHHHHHhccCCCCCCchhhhhhcchhhhhh-hhh----HHHHHhHHH-HhhhhHHHHHHHHHHhcccccccHHHHHHHHH
Confidence 8885432 22 1112211111100000 001 134555554 4577777777777555423456 558888988
Q ss_pred HHHHhcccCchhhhhhccHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhccc
Q 000737 1243 FSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSINSH 1298 (1322)
Q Consensus 1243 fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~~~ 1298 (1322)
-+-.+...- ++... +.++.-++. ..--+|+.-|..+.-|.|.+--.++.+
T Consensus 567 aL~~Ls~~~-pk~~a----~~~L~~lld-~~ls~~~~~r~g~~la~~ev~~~~~~l 616 (1133)
T KOG1943|consen 567 ALHKLSLTE-PKYLA----DYVLPPLLD-STLSKDASMRHGVFLAAGEVIGALRKL 616 (1133)
T ss_pred HHHHHHHhh-HHhhc----ccchhhhhh-hhcCCChHHhhhhHHHHHHHHHHhhhh
Confidence 777654332 33322 233344444 344578888888877777765444433
No 61
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.48 E-value=0.0038 Score=61.26 Aligned_cols=106 Identities=24% Similarity=0.236 Sum_probs=79.7
Q ss_pred HHHHHHhhcCCCChhHHhhhhhcccCCCc---hhHhhhH-hHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchh
Q 000737 1023 MVEALCRHVSDESPTVRGLCLRGLVQIPS---IHIHQYA-TQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEP 1098 (1322)
Q Consensus 1023 ~~~~L~~~l~D~~~~VR~lalrGLg~l~~---~~v~~~~-~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~ 1098 (1322)
+++.|.+-+.|+++.+|.-++..|++++. +...... ..+++.+++.|.+.+..++..|+.+|+++...-.. ...
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~--~~~ 85 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED--NKL 85 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH--HHH
Confidence 45677777789999999999999999985 2222222 37899999999998999999999999999865321 111
Q ss_pred hHH--hHHHHhccccccCChhHHHHHHHHHHHHh
Q 000737 1099 ILL--NLSVRLRNLQVSMNVKMRRNAFAAFGALS 1130 (1322)
Q Consensus 1099 ~l~--~l~~~lrpffede~~~vR~aAi~lfG~L~ 1130 (1322)
... .+...+..++++++..+|..|..+++.++
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 111 23455566778889999999999999875
No 62
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.47 E-value=0.21 Score=60.51 Aligned_cols=278 Identities=16% Similarity=0.201 Sum_probs=174.6
Q ss_pred hhHHHHHH-HHHhhhcccCccchHHHH---HHHHHHhhcCCchhchHHHHHHHHHhhcCCCChhHHhhhhhcccCCCc--
Q 000737 978 KEVQTICL-ILTKSINRQQRFQREAAA---AALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS-- 1051 (1322)
Q Consensus 978 ~~~~~il~-~l~~~l~s~~~~~Ri~a~---aflsEll~~~~~~~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~-- 1051 (1322)
.+++++.+ ....+..|+...+|..+. |+.+--+. ..+. ...+.++.-....++|++..||-.|...|-|++.
T Consensus 38 ~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg-~~~~-~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~ 115 (675)
T KOG0212|consen 38 DQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALG-IKDA-GYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVA 115 (675)
T ss_pred HHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhc-cccH-HHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHh
Confidence 47888888 556788888888886443 33332232 2222 3778888888999999999999999999999985
Q ss_pred -hhHhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhh-HHhHHHHhccccccCChhHHHHHHHHHHHH
Q 000737 1052 -IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPI-LLNLSVRLRNLQVSMNVKMRRNAFAAFGAL 1129 (1322)
Q Consensus 1052 -~~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~-l~~l~~~lrpffede~~~vR~aAi~lfG~L 1129 (1322)
..+-.|.+.+-.++-...-|.|..| ..+..-|.+++...-.+....| +..+..-|+--.-.-++..|..-++-+-.|
T Consensus 116 k~~v~~~Fn~iFdvL~klsaDsd~~V-~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~L 194 (675)
T KOG0212|consen 116 KGEVLVYFNEIFDVLCKLSADSDQNV-RGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVL 194 (675)
T ss_pred ccCcccchHHHHHHHHHHhcCCcccc-ccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 4455566666666666666655444 4455555555533222222122 223333344445556888998888877776
Q ss_pred hhccCCcchHhHHHHHHHhHHHHHHhccCCChhHHHHHHHHHHhhcchhhhhhhhhhccccCCCCCCCChHHHHHHHHHH
Q 000737 1130 SNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQ 1209 (1322)
Q Consensus 1130 ~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~~~l~~lf~~~~~~~~~~l~~~~f~~~~~k~ 1209 (1322)
-. ..+ ..|...+-..+.-|+--|.|++++||+.|-.++.. .++++-.+.. +++|++.
T Consensus 195 ds-~P~---~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~-------fL~eI~s~P~-----s~d~~~~------- 251 (675)
T KOG0212|consen 195 DS-VPD---LEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSE-------FLAEIRSSPS-----SMDYDDM------- 251 (675)
T ss_pred hc-CCc---HHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHH-------HHHHHhcCcc-----ccCcccc-------
Confidence 65 222 22333333445555668999999999988777655 2222222221 1233222
Q ss_pred HHHhCcchHHHHHHHHHhhhcCCChhhHHHHHHHHHHhcccCchhhhhhccHHHHHHHHHHHhccCCCh-HHHHHHHHHH
Q 000737 1210 FVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADA-IVRATCSSSL 1288 (1322)
Q Consensus 1210 L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp-~VR~~Aa~aL 1288 (1322)
+.-.+..+.||.+.|+.-|...|--+++..+++-+. ....++.++.. +..|.++ .++..|...-
T Consensus 252 ------------i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~--~~s~il~~iLp-c~s~~e~~~i~~~a~~~n 316 (675)
T KOG0212|consen 252 ------------INVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLL--YLSGILTAILP-CLSDTEEMSIKEYAQMVN 316 (675)
T ss_pred ------------hhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhh--hhhhhhhhccc-CCCCCccccHHHHHHHHH
Confidence 222355789999999999999999888877766653 33445566666 6667666 4777777666
Q ss_pred HHHHHHhc
Q 000737 1289 GWLLKSIN 1296 (1322)
Q Consensus 1289 ~~l~k~~~ 1296 (1322)
+.+.+.+.
T Consensus 317 ~~l~~l~s 324 (675)
T KOG0212|consen 317 GLLLKLVS 324 (675)
T ss_pred HHHHHHHh
Confidence 66665443
No 63
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.45 E-value=0.011 Score=58.00 Aligned_cols=110 Identities=17% Similarity=0.126 Sum_probs=80.4
Q ss_pred HHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHH-hHHHHhccccccCChhHHHHHHHHHHHHhhccCCcch
Q 000737 1060 QVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILL-NLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQR 1138 (1322)
Q Consensus 1060 ~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~-~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~ 1138 (1322)
.+++.+++.|.+.+.++...|+.+|+++....+ .....+.- .+...+.+++.+.++.+|..|..+++.++....
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~---- 81 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNN-DNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE---- 81 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCH-HHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH----
Confidence 368888889998888999999999999986532 22222222 566667778889999999999999999987221
Q ss_pred HhHHHHHH-HhHHHHHH-hccCCChhHHHHHHHHHHhhc
Q 000737 1139 EAFLEQIH-AMLPRLIL-HIYDDDLSVRQACRNTLKQVA 1175 (1322)
Q Consensus 1139 ~~~~eqv~-~~LvpLLl-HL~D~~~~V~~ack~tL~~~a 1175 (1322)
...+.+. ..+++.+. +++|++..|++.+..+|..++
T Consensus 82 -~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 -DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred -HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 2222222 33555555 778889999999999998765
No 64
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.42 E-value=0.099 Score=60.01 Aligned_cols=287 Identities=15% Similarity=0.112 Sum_probs=164.5
Q ss_pred hcccCccchHHHHHHHHHHhhcCCchhchHHH-HHHHHHhhcCCCChhHHhhhhhcccCCCc-----hhHhhhHhHHHHH
Q 000737 991 INRQQRFQREAAAAALSEFVRYSGGFDSLLEQ-MVEALCRHVSDESPTVRGLCLRGLVQIPS-----IHIHQYATQVLSV 1064 (1322)
Q Consensus 991 l~s~~~~~Ri~a~aflsEll~~~~~~~~ll~~-~~~~L~~~l~D~~~~VR~lalrGLg~l~~-----~~v~~~~~~lL~a 1064 (1322)
-++.+.+-|.-|+.++..+-.+....+.+... .+++|...++..++.||-.|-.++||++- +...+-.|.++++
T Consensus 176 akskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~ 255 (550)
T KOG4224|consen 176 AKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPA 255 (550)
T ss_pred cccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHH
Confidence 33455555555555554433322222222222 45678888899999999999999999986 2334445679999
Q ss_pred HHhhcccCChHHHHHHHHHHHHHhccCC------cccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccCCcch
Q 000737 1065 ILALLDDLDESVQLTAVSCLLTILKSSS------KDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQR 1138 (1322)
Q Consensus 1065 ll~~L~d~d~~V~leam~~L~~ll~~l~------~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~ 1138 (1322)
+++.++|.++.|.+.|-.+|+.+-..-. +.+.-|.++. ++.++.-..=.+++.....++-. .+ ..
T Consensus 256 Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~-------Llqs~~~plilasVaCIrnisih-pl-Ne 326 (550)
T KOG4224|consen 256 LVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVE-------LLQSPMGPLILASVACIRNISIH-PL-NE 326 (550)
T ss_pred HHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHH-------HHhCcchhHHHHHHHHHhhcccc-cC-cc
Confidence 9999999999999999999999863211 1122233332 33555555666666666665531 11 11
Q ss_pred HhHHHHHHHhHHHHHHhcc-CCChhHHHHHHHHHHhhcchhhhhhhhhhcccc-------CCCCCCCChHHHHHHHHHHH
Q 000737 1139 EAFLEQIHAMLPRLILHIY-DDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHC-------FNSDHRSDYETFVRDLTRQF 1210 (1322)
Q Consensus 1139 ~~~~eqv~~~LvpLLlHL~-D~~~~V~~ack~tL~~~a~~L~~~l~~lf~~~~-------~~~~~~l~~~~f~~~~~k~L 1210 (1322)
-...++ +.|-||+--|. -+|.++.-.+-.||...|..-+-..+..+...+ +-++ .++ |..++..++
T Consensus 327 ~lI~da--gfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~-pvs---vqseisac~ 400 (550)
T KOG4224|consen 327 VLIADA--GFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDG-PVS---VQSEISACI 400 (550)
T ss_pred cceecc--cchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC-Chh---HHHHHHHHH
Confidence 222222 23444443222 335567778889999888643333333333221 1122 233 344444444
Q ss_pred HH---hCcch--HHHH--HHHHHhhhcCCChhhHHHHHHHHHHhcccCc--hhhhhhc--cHHHHHHHHHHHhccCCChH
Q 000737 1211 VQ---HFPSR--IDSY--MGSTIQAFEAPWPIIQANAIYFSSSILCLCD--DQHILSL--FYTQVFGLLVVKLSQSADAI 1279 (1322)
Q Consensus 1211 ~~---~~~~~--~~~~--l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~--~~~~~~~--~~e~l~~~L~~~Ll~Dpdp~ 1279 (1322)
.+ +.-++ +..+ +.-.++++.|...++|.+|+-.+|-+-...+ ..-+... ..+.+-.-|.. .+...+..
T Consensus 401 a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~R-fl~S~~~t 479 (550)
T KOG4224|consen 401 AQLALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLAR-FLASHELT 479 (550)
T ss_pred HHHHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHH-HHhhhHHH
Confidence 32 11111 1111 2236778999999999999976666543222 1111111 12445566666 67788888
Q ss_pred HHHHHHHHHHHHHH
Q 000737 1280 VRATCSSSLGWLLK 1293 (1322)
Q Consensus 1280 VR~~Aa~aL~~l~k 1293 (1322)
+|..|.-|+-.|..
T Consensus 480 f~hia~wTI~qLle 493 (550)
T KOG4224|consen 480 FRHIARWTIQQLLE 493 (550)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888777663
No 65
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=96.36 E-value=0.067 Score=63.52 Aligned_cols=190 Identities=16% Similarity=0.164 Sum_probs=140.1
Q ss_pred CchhhHHHhHHHHHHHHhhhCC--h--hHHHHHHHHHhhhcc-cCccchHHHHHHHHHHhhcCCch-hchHHHHHHHHHh
Q 000737 956 NDKEKWINLIGDVAGCVSIKRP--K--EVQTICLILTKSINR-QQRFQREAAAAALSEFVRYSGGF-DSLLEQMVEALCR 1029 (1322)
Q Consensus 956 ~~~~~~~~GV~lLar~l~~~~~--~--~~~~il~~l~~~l~s-~~~~~Ri~a~aflsEll~~~~~~-~~ll~~~~~~L~~ 1029 (1322)
+..+..-+|...|-..++.... | ++..|+..+.-.|.. .++..|..|.-.+.|.+.+.+.. ..--+-.+.-+.+
T Consensus 299 e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Le 378 (516)
T KOG2956|consen 299 ERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLE 378 (516)
T ss_pred cchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHH
Confidence 3445566677777777776533 2 588888888888887 78899999999999999987652 1122334555666
Q ss_pred hcCCCChhH-Hhh---hhhcccCCCc-hhHhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhHH
Q 000737 1030 HVSDESPTV-RGL---CLRGLVQIPS-IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLS 1104 (1322)
Q Consensus 1030 ~l~D~~~~V-R~l---alrGLg~l~~-~~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~ 1104 (1322)
..+|+.+.| |.+ |++-++...+ ..+.. +-+.++. .|++....++..+.++.+.++.+.+..++..|+
T Consensus 379 aa~ds~~~v~~~Aeed~~~~las~~P~~~I~~----i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~dia 450 (516)
T KOG2956|consen 379 AAKDSQDEVMRVAEEDCLTTLASHLPLQCIVN----ISPLILT----ADEPRAVAVIKMLTKLFERLSAEELLNLLPDIA 450 (516)
T ss_pred HHhCCchhHHHHHHHHHHHHHHhhCchhHHHH----HhhHHhc----CcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhh
Confidence 677776655 554 3555555544 44422 2333333 578888999999999999999999999999999
Q ss_pred HHhccccccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHH
Q 000737 1105 VRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLI 1153 (1322)
Q Consensus 1105 ~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLL 1153 (1322)
.-+-.-++..+..||..|+..+=++.+..+.+..+|.++++-.+-.-|+
T Consensus 451 P~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~Ll 499 (516)
T KOG2956|consen 451 PCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNLL 499 (516)
T ss_pred hHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHHH
Confidence 9999999999999999999999999886655888998888655544443
No 66
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.34 E-value=0.09 Score=59.68 Aligned_cols=165 Identities=20% Similarity=0.221 Sum_probs=107.9
Q ss_pred HHHHHHHhhhccc-CccchHHHHHHHHHHhhcCCchhchHHH--HHHHHHhhcCCCChhHHhhhhhcccCCCc-----hh
Q 000737 982 TICLILTKSINRQ-QRFQREAAAAALSEFVRYSGGFDSLLEQ--MVEALCRHVSDESPTVRGLCLRGLVQIPS-----IH 1053 (1322)
Q Consensus 982 ~il~~l~~~l~s~-~~~~Ri~a~aflsEll~~~~~~~~ll~~--~~~~L~~~l~D~~~~VR~lalrGLg~l~~-----~~ 1053 (1322)
.-++-+..+|++. ++.-+-.|...++..-..+.. +..+.. .+..+..-+.+|+|.||.-|+.+|.|++. .+
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~n-q~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~ 90 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAAFPFN-QDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQ 90 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhH-HHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHH
Confidence 3344555555543 333444444444443333322 222222 57788888999999999999999999986 46
Q ss_pred HhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhcc
Q 000737 1054 IHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFG 1133 (1322)
Q Consensus 1054 v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~ 1133 (1322)
++.|.++++.-+.+. ..|+++.+.++..|.++- ++ .+...++.+-...+.+++...+..+|.-+..++-.|+...
T Consensus 91 Ik~~i~~Vc~~~~s~--~lns~~Q~agLrlL~nLt--v~-~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np 165 (254)
T PF04826_consen 91 IKMYIPQVCEETVSS--PLNSEVQLAGLRLLTNLT--VT-NDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENP 165 (254)
T ss_pred HHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHccC--CC-cchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCH
Confidence 777888888877764 346789998888888874 22 2334444455555667888999999999999999988621
Q ss_pred CCcchHhHHHHHHHhHHHHH
Q 000737 1134 VGSQREAFLEQIHAMLPRLI 1153 (1322)
Q Consensus 1134 ~~~~~~~~~eqv~~~LvpLL 1153 (1322)
.--++-+..|+...++.|+
T Consensus 166 -~~~~~Ll~~q~~~~~~~Lf 184 (254)
T PF04826_consen 166 -DMTRELLSAQVLSSFLSLF 184 (254)
T ss_pred -HHHHHHHhccchhHHHHHH
Confidence 1124445556666666433
No 67
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.33 E-value=0.021 Score=70.75 Aligned_cols=193 Identities=17% Similarity=0.282 Sum_probs=142.2
Q ss_pred hHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccch-hhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccCC
Q 000737 1057 YATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVE-PILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVG 1135 (1322)
Q Consensus 1057 ~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~-~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~ 1135 (1322)
|...++|.++..+...|..|++--+..+-+..++++++.+. .+++++ -.-|-|.++.+|+-.+..+-.|+..
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv----~~G~~DTn~~Lre~Tlksm~~La~k--- 399 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHV----ALGFLDTNATLREQTLKSMAVLAPK--- 399 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHH----HhhcccCCHHHHHHHHHHHHHHHhh---
Confidence 77788999999998888889988888888888888876654 344443 4578889999999999888888762
Q ss_pred cchHhHHHHHHHhHHHHHHhccCCChhHHHHHHHHHHhhcchhhh-hhhhhhccccCCCCCCCChHHHHHHHHHHHHHhC
Q 000737 1136 SQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHF 1214 (1322)
Q Consensus 1136 ~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~~-~l~~lf~~~~~~~~~~l~~~~f~~~~~k~L~~~~ 1214 (1322)
-.+..+-.++++.+-.+-- |++..+|+..-..++.+++++.. ..+-+.... |
T Consensus 400 L~~~~Ln~Ellr~~ar~q~---d~~~~irtntticlgki~~~l~~~~R~~vL~~a------------f------------ 452 (690)
T KOG1243|consen 400 LSKRNLNGELLRYLARLQP---DEHGGIRTNTTICLGKIAPHLAASVRKRVLASA------------F------------ 452 (690)
T ss_pred hchhhhcHHHHHHHHhhCc---cccCcccccceeeecccccccchhhhccccchh------------h------------
Confidence 1223455566666655443 88999999999999999988766 422111110 1
Q ss_pred cchHHHHHHHHHhhhcCCChhhHHHHHHHHHHhcccCchhhhhhccHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHH
Q 000737 1215 PSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKS 1294 (1322)
Q Consensus 1215 ~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~ 1294 (1322)
..-+++|.++-|.++++-.-...++++.+.. ...+...+.- +.-||++.||..|-.++..+...
T Consensus 453 -----------tralkdpf~paR~a~v~~l~at~~~~~~~~v----a~kIlp~l~p-l~vd~e~~vr~~a~~~i~~fl~k 516 (690)
T KOG1243|consen 453 -----------TRALKDPFVPARKAGVLALAATQEYFDQSEV----ANKILPSLVP-LTVDPEKTVRDTAEKAIRQFLEK 516 (690)
T ss_pred -----------hhhhcCCCCCchhhhhHHHhhcccccchhhh----hhhccccccc-cccCcccchhhHHHHHHHHHHhh
Confidence 2257899999999999866666667666554 3567777877 89999999999999998887766
Q ss_pred hcccc
Q 000737 1295 INSHS 1299 (1322)
Q Consensus 1295 ~~~~~ 1299 (1322)
...++
T Consensus 517 l~~~~ 521 (690)
T KOG1243|consen 517 LEKVS 521 (690)
T ss_pred hhhhc
Confidence 65554
No 68
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.26 E-value=0.079 Score=67.56 Aligned_cols=188 Identities=17% Similarity=0.199 Sum_probs=123.4
Q ss_pred hhhHHHhHHHHHHHHhhhCChhHHHHHHHHHhhhcccCccchHHHHHHHHHHhhcCCchhchHHHHHHHHHhhcCCCChh
Q 000737 958 KEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPT 1037 (1322)
Q Consensus 958 ~~~~~~GV~lLar~l~~~~~~~~~~il~~l~~~l~s~~~~~Ri~a~aflsEll~~~~~~~~ll~~~~~~L~~~l~D~~~~ 1037 (1322)
...=.+|+.-+...|..... ++.++..+++...+.+...+..--.. +.+.+.......--.+|.+.+-+.||||.
T Consensus 33 ~~~kidAmK~iIa~M~~G~d--mssLf~dViK~~~trd~ElKrL~ylY---l~~yak~~P~~~lLavNti~kDl~d~N~~ 107 (757)
T COG5096 33 DYKKIDAMKKIIAQMSLGED--MSSLFPDVIKNVATRDVELKRLLYLY---LERYAKLKPELALLAVNTIQKDLQDPNEE 107 (757)
T ss_pred hHHHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHhcCHHHHHHHHHH---HHHHhccCHHHHHHHHHHHHhhccCCCHH
Confidence 34455566555555554333 55556666655554443333322111 12222222222223688899999999999
Q ss_pred HHhhhhhcccCCCchhHhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCChh
Q 000737 1038 VRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVK 1117 (1322)
Q Consensus 1038 VR~lalrGLg~l~~~~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~ 1117 (1322)
+|.+|+|-||.+...+ ..+++++++.+.+.|.+.-|+..|..++.++.+. +..-+... .....+.-+..|+++.
T Consensus 108 iR~~AlR~ls~l~~~e---l~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l-d~~l~~~~--g~~~~l~~l~~D~dP~ 181 (757)
T COG5096 108 IRGFALRTLSLLRVKE---LLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL-DKDLYHEL--GLIDILKELVADSDPI 181 (757)
T ss_pred HHHHHHHHHHhcChHH---HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc-CHhhhhcc--cHHHHHHHHhhCCCch
Confidence 9999999999998644 4678999999999999999999999999999853 33222211 0233345567799999
Q ss_pred HHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHHhccCCC
Q 000737 1118 MRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDD 1160 (1322)
Q Consensus 1118 vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~ 1160 (1322)
|-+.|+..+-.+-. +...+|...+...+..|.+-+.+.+
T Consensus 182 Vi~nAl~sl~~i~~----e~a~~~~~~~~~~i~~l~~~~~~~~ 220 (757)
T COG5096 182 VIANALASLAEIDP----ELAHGYSLEVILRIPQLDLLSLSVS 220 (757)
T ss_pred HHHHHHHHHHHhch----hhhhhHHHHHHHHhhhccchhhhhh
Confidence 99999999888765 2456677777777766665444443
No 69
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.21 E-value=0.0064 Score=45.59 Aligned_cols=31 Identities=19% Similarity=0.321 Sum_probs=25.7
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHHHHh
Q 000737 1264 VFGLLVVKLSQSADAIVRATCSSSLGWLLKSI 1295 (1322)
Q Consensus 1264 l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~ 1295 (1322)
+++.+.. +++||+|.||..|+++||.+.+.+
T Consensus 1 llp~l~~-~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQ-LLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHH-HHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHH-HcCCCCHHHHHHHHHHHHHHHhhC
Confidence 3566777 899999999999999999998754
No 70
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.21 E-value=0.54 Score=57.15 Aligned_cols=245 Identities=13% Similarity=0.130 Sum_probs=169.3
Q ss_pred chHHHHHHHHHhhcCCCChhHHhhhhhcc---cCCCchhHhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcc
Q 000737 1018 SLLEQMVEALCRHVSDESPTVRGLCLRGL---VQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKD 1094 (1322)
Q Consensus 1018 ~ll~~~~~~L~~~l~D~~~~VR~lalrGL---g~l~~~~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~ 1094 (1322)
.-++.+++.|.+++.+-||.+|..-+.=| -+.++-++-.|-+.+++.++.-|.|..++|+.-+=.+|+..|.....+
T Consensus 163 FsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~ 242 (675)
T KOG0212|consen 163 FSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSS 242 (675)
T ss_pred cCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 34566889999999999999999875444 455556777889999999999999999999988888888998777655
Q ss_pred cchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHHhccCCChh-HHHHHHHHHHh
Q 000737 1095 AVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLS-VRQACRNTLKQ 1173 (1322)
Q Consensus 1095 ~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~-V~~ack~tL~~ 1173 (1322)
..+--..++..-+.+-.....+.++..|+.-.-...+.. |...-++..-++..+.|. +.|.++. ...
T Consensus 243 P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~-g~~~l~~~s~il~~iLpc---~s~~e~~~i~~-------- 310 (675)
T KOG0212|consen 243 PSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIP-GRDLLLYLSGILTAILPC---LSDTEEMSIKE-------- 310 (675)
T ss_pred ccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCC-CcchhhhhhhhhhhcccC---CCCCccccHHH--------
Confidence 444234455566677788889999999999888888743 455566666666666554 4555553 222
Q ss_pred hcchhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhhHHHHHHHHHHhcccCch
Q 000737 1174 VAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDD 1253 (1322)
Q Consensus 1174 ~a~~L~~~l~~lf~~~~~~~~~~l~~~~f~~~~~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~~ 1253 (1322)
++...+-.+..++...-.++ .++|+..++- ...|+.+...+-|-+|--.|-.+....+.
T Consensus 311 ~a~~~n~~l~~l~s~~~~~~--~id~~~ii~v-------------------l~~~l~~~~~~tri~~L~Wi~~l~~~~p~ 369 (675)
T KOG0212|consen 311 YAQMVNGLLLKLVSSERLKE--EIDYGSIIEV-------------------LTKYLSDDREETRIAVLNWIILLYHKAPG 369 (675)
T ss_pred HHHHHHHHHHHHHhhhhhcc--ccchHHHHHH-------------------HHHHhhcchHHHHHHHHHHHHHHHhhCcc
Confidence 22222222223333221122 2666555433 34588888888999999888888877776
Q ss_pred hhhhhccHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhccc
Q 000737 1254 QHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSINSH 1298 (1322)
Q Consensus 1254 ~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~~~ 1298 (1322)
|.. .....++..|.. -+.|++-.|--.+-+-+..+.+..++.
T Consensus 370 ql~--~h~~~if~tLL~-tLsd~sd~vvl~~L~lla~i~~s~~~~ 411 (675)
T KOG0212|consen 370 QLL--VHNDSIFLTLLK-TLSDRSDEVVLLALSLLASICSSSNSP 411 (675)
T ss_pred hhh--hhccHHHHHHHH-hhcCchhHHHHHHHHHHHHHhcCcccc
Confidence 665 334567888887 588999999888777777666655553
No 71
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.21 E-value=0.093 Score=64.87 Aligned_cols=185 Identities=17% Similarity=0.152 Sum_probs=121.0
Q ss_pred hHHHHHHHHHhhhcccCccchHHHH-HHHHHHhhcCCchhchHHHHHHHHHhhcCCCChhHHhhhhhcccCCCc------
Q 000737 979 EVQTICLILTKSINRQQRFQREAAA-AALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS------ 1051 (1322)
Q Consensus 979 ~~~~il~~l~~~l~s~~~~~Ri~a~-aflsEll~~~~~~~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~------ 1051 (1322)
++-.++++..+.-+++.-..|+... +-|.+-+...+....++..++..+.++...++..||.-+++=|.-+..
T Consensus 41 eflr~vn~il~vkKresi~dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eid 120 (892)
T KOG2025|consen 41 EFLRVVNYILLVKKRESIPDRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEID 120 (892)
T ss_pred HHHHHHHHheeeccCCCcHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccC
Confidence 5666677777777777777776652 333333333333345888899999999999999999888776664432
Q ss_pred hhHhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhc-cCCcc-cchhhHHhHHHHhccccccCChhHHHHHHHHHHH-
Q 000737 1052 IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILK-SSSKD-AVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGA- 1128 (1322)
Q Consensus 1052 ~~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~-~l~~~-~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~- 1128 (1322)
+.+ ...+..+++.-+.|..+.|+.+|+.+|+++=+ -.+++ .+...+..+ .-.|++++||.+|..-..-
T Consensus 121 d~v---fn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~v~n~l~~l------iqnDpS~EVRRaaLsnI~vd 191 (892)
T KOG2025|consen 121 DDV---FNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEECPVVNLLKDL------IQNDPSDEVRRAALSNISVD 191 (892)
T ss_pred HHH---HHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcccHHHHHHHH------HhcCCcHHHHHHHHHhhccC
Confidence 333 45678999999999999999999999999873 22222 345555554 3489999999999865432
Q ss_pred ------HhhccCCcchHhHHHHHHHhH--------------HHHHH-hccCCChhHHHHHHHHHHh
Q 000737 1129 ------LSNFGVGSQREAFLEQIHAML--------------PRLIL-HIYDDDLSVRQACRNTLKQ 1173 (1322)
Q Consensus 1129 ------L~~~~~~~~~~~~~eqv~~~L--------------vpLLl-HL~D~~~~V~~ack~tL~~ 1173 (1322)
+..-+ ++-..+-+.-+.+-+ +-|+- -|.|-+.+|++||++++..
T Consensus 192 nsTlp~IveRa-rDV~~anRrlvY~r~lpkid~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~ 256 (892)
T KOG2025|consen 192 NSTLPCIVERA-RDVSGANRRLVYERCLPKIDLRSLSIDKRVLLLEWGLNDREFSVKGALVDAILS 256 (892)
T ss_pred cccchhHHHHh-hhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 22111 011111111122221 22333 5789999999999999865
No 72
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.15 E-value=0.32 Score=56.99 Aligned_cols=230 Identities=15% Similarity=0.110 Sum_probs=133.1
Q ss_pred HHHhhcCCCChhHHhhhhhcccCCCc-----hhHhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCC-cccchhh
Q 000737 1026 ALCRHVSDESPTVRGLCLRGLVQIPS-----IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSS-KDAVEPI 1099 (1322)
Q Consensus 1026 ~L~~~l~D~~~~VR~lalrGLg~l~~-----~~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~-~~~~~~~ 1099 (1322)
-....+.|-+...|..+|+++-++-. +.+.....+++++++.++.....+-..-|..+++-+.=.++ ......+
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei 126 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI 126 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence 34455577789999999999987642 66777888999999999987654444456666666644444 2345566
Q ss_pred HHhHHHHhccccccCC--hhHHHHHHHHHHHHhhccCCcchHhHHH--HHHHhHHHHHHhccCCChhHHHHHHHHHHhhc
Q 000737 1100 LLNLSVRLRNLQVSMN--VKMRRNAFAAFGALSNFGVGSQREAFLE--QIHAMLPRLILHIYDDDLSVRQACRNTLKQVA 1175 (1322)
Q Consensus 1100 l~~l~~~lrpffede~--~~vR~aAi~lfG~L~~~~~~~~~~~~~e--qv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a 1175 (1322)
+-.+-..|++...|.. ..+|.+++.++|-+.-++.+ ..+...+ +.+..+.....+-.|.+..+..+.-.+--.+|
T Consensus 127 ~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~-d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~a 205 (309)
T PF05004_consen 127 FEELKPVLKRILTDSSASPKARAACLEALAICTFVGGS-DEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAA 205 (309)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcC-ChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHH
Confidence 6666666777666654 46888999999988765543 3333321 44444444443333443111111111122233
Q ss_pred chhhh-hhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhhHHHHHHHHHHhcccCch-
Q 000737 1176 PFMEI-GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDD- 1253 (1322)
Q Consensus 1176 ~~L~~-~l~~lf~~~~~~~~~~l~~~~f~~~~~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~~- 1253 (1322)
.+-.| .+-..... .++. +. +...+......++|+..+||-||.-.|..+.-...+
T Consensus 206 AL~aW~lLlt~~~~-----------~~~~-~~-----------~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~ 262 (309)
T PF05004_consen 206 ALSAWALLLTTLPD-----------SKLE-DL-----------LEEALPALSELLDSDDVDVRIAAGEAIALLYELARDH 262 (309)
T ss_pred HHHHHHHHHhcCCH-----------HHHH-HH-----------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 34445 33322111 0010 11 112233345588999999999999999988643221
Q ss_pred -hhhhhccHHHHHHHHHHHhccCCChHH
Q 000737 1254 -QHILSLFYTQVFGLLVVKLSQSADAIV 1280 (1322)
Q Consensus 1254 -~~~~~~~~e~l~~~L~~~Ll~Dpdp~V 1280 (1322)
+.....+.+.++..+.+ |-+|..-.+
T Consensus 263 ~~~~~~~~~~~l~~~l~~-La~dS~K~~ 289 (309)
T PF05004_consen 263 EEDFLYEDMEELLEQLRE-LATDSSKSR 289 (309)
T ss_pred cccccccCHHHHHHHHHH-HHHhccCcc
Confidence 11223466777777777 666653333
No 73
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=96.09 E-value=0.23 Score=63.41 Aligned_cols=210 Identities=20% Similarity=0.190 Sum_probs=121.6
Q ss_pred HHHHHHHHHhCcHHHHHHHHhc--CCCCchhhHHHhHHHHHHHHhh-hCChhHHHHHHHHHhhhcccC----ccchHHHH
Q 000737 931 TSFQAFCECVGDLEMRKILARD--GEQNDKEKWINLIGDVAGCVSI-KRPKEVQTICLILTKSINRQQ----RFQREAAA 1003 (1322)
Q Consensus 931 eAlk~ll~~~g~~~~~~~Le~~--~~w~~~~~~~~GV~lLar~l~~-~~~~~~~~il~~l~~~l~s~~----~~~Ri~a~ 1003 (1322)
..|.-.+..+|...-...+... .+ .-+-.+...+++..+.. .+| -+.+++.+..++.++. ..-|.+|+
T Consensus 344 ~~~~Dal~~~GT~~a~~~i~~~i~~~---~~~~~ea~~~~~~~~~~~~~P--t~~~l~~l~~l~~~~~~~~~~~l~~sa~ 418 (574)
T smart00638 344 RIFLDAVAQAGTPPALKFIKQWIKNK---KITPLEAAQLLAVLPHTARYP--TEEILKALFELAESPEVQKQPYLRESAL 418 (574)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhhhcC--CHHHHHHHHHHhcCccccccHHHHHHHH
Confidence 3344445556766666555531 11 11223344444433322 123 3566666666666543 33457788
Q ss_pred HHHHHHhhc-CCch--------hchHHHHHHHHHhhcCCCChhHHhhhhhcccCCCchhHhhhHhHHHHHHHhhcc---c
Q 000737 1004 AALSEFVRY-SGGF--------DSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLD---D 1071 (1322)
Q Consensus 1004 aflsEll~~-~~~~--------~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~~~v~~~~~~lL~all~~L~---d 1071 (1322)
..++.+++. |... ..+.+.+...|.+..++.+...+.+.|+||||++.... ++.+..-+. +
T Consensus 419 l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~-------i~~l~~~l~~~~~ 491 (574)
T smart00638 419 LAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPSS-------IKVLEPYLEGAEP 491 (574)
T ss_pred HHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChhH-------HHHHHHhcCCCCC
Confidence 888888872 3321 24455566666666667788889999999999996332 333333333 2
Q ss_pred CChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccc-cCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHH
Q 000737 1072 LDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQV-SMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLP 1150 (1322)
Q Consensus 1072 ~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffe-de~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~Lv 1150 (1322)
....++..|+.+|+++...- ...+.+.+..| |++ .++.+||.+|+.++=.-- ......++| .
T Consensus 492 ~~~~iR~~Av~Alr~~a~~~-p~~v~~~l~~i------~~n~~e~~EvRiaA~~~lm~t~------P~~~~l~~i----a 554 (574)
T smart00638 492 LSTFIRLAAILALRNLAKRD-PRKVQEVLLPI------YLNRAEPPEVRMAAVLVLMETK------PSVALLQRI----A 554 (574)
T ss_pred CCHHHHHHHHHHHHHHHHhC-chHHHHHHHHH------HcCCCCChHHHHHHHHHHHhcC------CCHHHHHHH----H
Confidence 34569999999999886543 34555666554 333 578999999998765421 122233333 2
Q ss_pred HHHHhccCCChhHHHHHHHHH
Q 000737 1151 RLILHIYDDDLSVRQACRNTL 1171 (1322)
Q Consensus 1151 pLLlHL~D~~~~V~~ack~tL 1171 (1322)
-.+- .|++..|+.....+|
T Consensus 555 ~~l~--~E~~~QV~sfv~S~l 573 (574)
T smart00638 555 ELLN--KEPNLQVASFVYSHI 573 (574)
T ss_pred HHHh--hcCcHHHHHHhHHhh
Confidence 2222 377888887655443
No 74
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.06 E-value=1.2 Score=56.47 Aligned_cols=352 Identities=14% Similarity=0.149 Sum_probs=184.1
Q ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHH-----HHHHHhhhhccCCCCCCCChHHHHHHHHHHHHHHhCcHHHHH
Q 000737 873 ILQAAILALTAFFRGGGKVGKKAVEKSYAPVLA-----ALTLQLGSCHGLASSGQHEPLRAILTSFQAFCECVGDLEMRK 947 (1322)
Q Consensus 873 ~~laA~~aL~Ell~~~~~~~~~~v~~~fp~Lf~-----aLL~ql~~~~~l~~~~~~~P~~~aleAlk~ll~~~g~~~~~~ 947 (1322)
+=-|+.||.+-+..+| +...-....|.+++. .|+.-++-+.++- +.+| .+++-||.+. .+.+.
T Consensus 159 rKKA~Lca~r~irK~P--~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c---~~~~--~~l~~fr~l~-----~~lV~ 226 (866)
T KOG1062|consen 159 RKKAALCAVRFIRKVP--DLVEHFVIAFRKLLCEKHHGVLIAGLHLITELC---KISP--DALSYFRDLV-----PSLVK 226 (866)
T ss_pred HHHHHHHHHHHHHcCc--hHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHH---hcCH--HHHHHHHHHH-----HHHHH
Confidence 3448899998888888 454444444444441 1112222222220 1122 3455555521 12334
Q ss_pred HHHh--cC----CCC---chhhHHHhH-HHHHHHHhhhCChhHHHHHHHHHhhhcccCccchHHHHHHHHHHhhcCCc--
Q 000737 948 ILAR--DG----EQN---DKEKWINLI-GDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGG-- 1015 (1322)
Q Consensus 948 ~Le~--~~----~w~---~~~~~~~GV-~lLar~l~~~~~~~~~~il~~l~~~l~s~~~~~Ri~a~aflsEll~~~~~-- 1015 (1322)
.|+. .+ +.+ =+.+|.+== -.+.|-+-+..+ ....+|.-+.--....-+..|=++=|++-|.+..-.+
T Consensus 227 iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~-daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~ 305 (866)
T KOG1062|consen 227 ILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDA-DASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIR 305 (866)
T ss_pred HHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhcc
Confidence 4442 11 222 234444411 112455555444 5566666666555566677777888889888875322
Q ss_pred -hhchHHHHHHHHHhhcCCCChhHHhhhhhcccCCCc---hhHhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccC
Q 000737 1016 -FDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS---IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSS 1091 (1322)
Q Consensus 1016 -~~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~---~~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l 1091 (1322)
...+..-.+++|.+.+..++-..|=+||.+|+..-. .-+.+|+.++ ++.|+|+|..+..+||.-+-.+++.
T Consensus 306 ~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tI----leCL~DpD~SIkrralELs~~lvn~- 380 (866)
T KOG1062|consen 306 SNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTI----LECLKDPDVSIKRRALELSYALVNE- 380 (866)
T ss_pred CCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHH----HHHhcCCcHHHHHHHHHHHHHHhcc-
Confidence 345666678888888888888888888888887654 3455665554 4456777778888888777777653
Q ss_pred CcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhh-ccCCcchHhHHHHHHHhHHHHHHhccCCChhHHHHHHHH
Q 000737 1092 SKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN-FGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNT 1170 (1322)
Q Consensus 1092 ~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~-~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~t 1170 (1322)
..+. .++..+-.|++.-++++|+--+.-.-.++. |+ ..+.++.+++.+.+-.
T Consensus 381 --~Nv~----~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfa--P~k~W~idtml~Vl~~------------------- 433 (866)
T KOG1062|consen 381 --SNVR----VMVKELLEFLESSDEDFKADIASKIAELAEKFA--PDKRWHIDTMLKVLKT------------------- 433 (866)
T ss_pred --ccHH----HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcC--CcchhHHHHHHHHHHh-------------------
Confidence 2222 333444445555555555544433333332 22 2344444443332211
Q ss_pred HHhhcchhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHH---HHHHHh---hhcCCChhhHHHHHHHH
Q 000737 1171 LKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSY---MGSTIQ---AFEAPWPIIQANAIYFS 1244 (1322)
Q Consensus 1171 L~~~a~~L~~~l~~lf~~~~~~~~~~l~~~~f~~~~~k~L~~~~~~~~~~~---l~~~l~---ylkS~~~~IR~aA~~fi 1244 (1322)
.+.+=-++.++++...+.+.|++.-..- +..++. ...-+++.+-+.|+|-|
T Consensus 434 -----------------------aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~I 490 (866)
T KOG1062|consen 434 -----------------------AGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCI 490 (866)
T ss_pred -----------------------cccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHh
Confidence 1111112344444444444433321110 111122 23456777888999999
Q ss_pred HHhcccCc----hhhhhhccHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHH
Q 000737 1245 SSILCLCD----DQHILSLFYTQVFGLLVVKLS-QSADAIVRATCSSSLGWLL 1292 (1322)
Q Consensus 1245 G~l~~~l~----~~~~~~~~~e~l~~~L~~~Ll-~Dpdp~VR~~Aa~aL~~l~ 1292 (1322)
|.-...+- .++-.++.-+++...|...+. ...++.++.-|..|+-.|-
T Consensus 491 GEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLS 543 (866)
T KOG1062|consen 491 GEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLS 543 (866)
T ss_pred hhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 97664221 122223444555555555222 3455777777777755554
No 75
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=95.98 E-value=0.3 Score=54.44 Aligned_cols=157 Identities=17% Similarity=0.219 Sum_probs=83.1
Q ss_pred HHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccCCcchHhH
Q 000737 1062 LSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAF 1141 (1322)
Q Consensus 1062 L~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~~~~ 1141 (1322)
+.++.+.+.|...---.+....|+..- ..+.-+++.++ +.-++..+-||-.|..+||++.. ..
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~~----~~~Av~~l~~v-----l~desq~pmvRhEAaealga~~~----~~---- 100 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQMQ----DEDAVPVLVEV-----LLDESQEPMVRHEAAEALGAIGD----PE---- 100 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhhc----cchhhHHHHHH-----hcccccchHHHHHHHHHHHhhcc----hh----
Confidence 555666665532222235555554432 33344454443 34466668899999999999873 11
Q ss_pred HHHHHHhHHHHHH-hccCCChhHHHHHHHHHHhhcchhhh--hhhhhhccccCCCCC-CCC-hHHHHHHHHHHHHHhCcc
Q 000737 1142 LEQIHAMLPRLIL-HIYDDDLSVRQACRNTLKQVAPFMEI--GVYGIFNSHCFNSDH-RSD-YETFVRDLTRQFVQHFPS 1216 (1322)
Q Consensus 1142 ~eqv~~~LvpLLl-HL~D~~~~V~~ack~tL~~~a~~L~~--~l~~lf~~~~~~~~~-~l~-~~~f~~~~~k~L~~~~~~ 1216 (1322)
.++.+- -.+|++..|+..|..|+.+ +.| ......+...+...+ ... ...-+.++-..|......
T Consensus 101 -------~~~~l~k~~~dp~~~v~ETc~lAi~r----le~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~ 169 (289)
T KOG0567|consen 101 -------SLEILTKYIKDPCKEVRETCELAIKR----LEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKP 169 (289)
T ss_pred -------hHHHHHHHhcCCccccchHHHHHHHH----HHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchh
Confidence 122232 1269999999999999988 455 222211111111110 000 111234455555554444
Q ss_pred hHHHHHHHHHhh----------------hcCCChhhHHHHHHHHHHhc
Q 000737 1217 RIDSYMGSTIQA----------------FEAPWPIIQANAIYFSSSIL 1248 (1322)
Q Consensus 1217 ~~~~~l~~~l~y----------------lkS~~~~IR~aA~~fiG~l~ 1248 (1322)
.+..| +++.| ++.+..-+|-.++...|++-
T Consensus 170 l~~Ry--~amF~LRn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl~ 215 (289)
T KOG0567|consen 170 LFERY--RAMFYLRNIGTEEAINALIDGLADDSALFRHEVAFVFGQLQ 215 (289)
T ss_pred HHHHH--hhhhHhhccCcHHHHHHHHHhcccchHHHHHHHHHHHhhcc
Confidence 44444 33333 44455667777887778774
No 76
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=95.96 E-value=0.34 Score=62.24 Aligned_cols=306 Identities=15% Similarity=0.169 Sum_probs=156.3
Q ss_pred hHHHHHHHHHhhhcccCccchHHHHHHHHHHhhcCCchh-chHHHHHHHHHhhcCCCChhHHhhhhhcccCCCc-hhHhh
Q 000737 979 EVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFD-SLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS-IHIHQ 1056 (1322)
Q Consensus 979 ~~~~il~~l~~~l~s~~~~~Ri~a~aflsEll~~~~~~~-~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~-~~v~~ 1056 (1322)
.-+.++..|.+.|.+.+..-.+.++.|+..|--...... +.-..+++.|.+-+..++..++..++|-|.|++. .+++.
T Consensus 287 ~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~ 366 (708)
T PF05804_consen 287 VNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRS 366 (708)
T ss_pred HhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 346778888899999888888888888877643322222 2223378888888899999999999999999997 33322
Q ss_pred --hHhHHHHHHHhhcccCCh-HHHHHHHHHHHHHh---ccCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHh
Q 000737 1057 --YATQVLSVILALLDDLDE-SVQLTAVSCLLTIL---KSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALS 1130 (1322)
Q Consensus 1057 --~~~~lL~all~~L~d~d~-~V~leam~~L~~ll---~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~ 1130 (1322)
-..-++|.+...|.+.+- .+++..+.-|+.-= .....++.-+.+.++ +++..+..+...++.+.-.++
T Consensus 367 ~mV~~GlIPkLv~LL~d~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~------Ll~~~~~~v~~eliaL~iNLa 440 (708)
T PF05804_consen 367 QMVSLGLIPKLVELLKDPNFREVALKILYNLSMDDEARSMFAYTDCIPQLMQM------LLENSEEEVQLELIALLINLA 440 (708)
T ss_pred HHHHCCCcHHHHHHhCCCchHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHH------HHhCCCccccHHHHHHHHHHh
Confidence 223357888888876542 23333333322210 001111111222221 233344445444555554444
Q ss_pred hc-------cCCcchHhHHHHHH--------------------------HhHHHHHHhccC-CChhHHHHHHHHHHhhc-
Q 000737 1131 NF-------GVGSQREAFLEQIH--------------------------AMLPRLILHIYD-DDLSVRQACRNTLKQVA- 1175 (1322)
Q Consensus 1131 ~~-------~~~~~~~~~~eqv~--------------------------~~LvpLLlHL~D-~~~~V~~ack~tL~~~a- 1175 (1322)
.. +.|..-..+.+... ..+.+|+-.+.. ++++..-.|-.+|+..+
T Consensus 441 ~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~ 520 (708)
T PF05804_consen 441 LNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTI 520 (708)
T ss_pred cCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccc
Confidence 31 11111122222211 122222222222 35566666777776665
Q ss_pred chhhh-hhh-h-----hhccccCCCCCCCChHHHHHHHHHHHHH--hCcchHHH-----HHHHHHhhhcCCCh--hhHHH
Q 000737 1176 PFMEI-GVY-G-----IFNSHCFNSDHRSDYETFVRDLTRQFVQ--HFPSRIDS-----YMGSTIQAFEAPWP--IIQAN 1239 (1322)
Q Consensus 1176 ~~L~~-~l~-~-----lf~~~~~~~~~~l~~~~f~~~~~k~L~~--~~~~~~~~-----~l~~~l~ylkS~~~--~IR~a 1239 (1322)
+-++| .+- . ...+. +.+| ..-++.+.+++..+.. ..++-+.. ++.+.+..|++-+. ++=-.
T Consensus 521 ~~ld~~~ll~~~~llp~L~~~-L~~g--~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQ 597 (708)
T PF05804_consen 521 PDLDWAQLLQEYNLLPWLKDL-LKPG--ASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQ 597 (708)
T ss_pred CCcCHHHHHHhCCHHHHHHHH-hCCC--CCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHH
Confidence 33455 331 1 11111 2222 1112333333333221 11111111 23334444444442 22222
Q ss_pred HHHHHHHhcccCc-hhhhhhccHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhc
Q 000737 1240 AIYFSSSILCLCD-DQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSIN 1296 (1322)
Q Consensus 1240 A~~fiG~l~~~l~-~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~ 1296 (1322)
-+...+.++.|=. .+.+ +...++...|++ |.+|..+.||+.|..+|..+..+..
T Consensus 598 il~~f~~ll~h~~tr~~l--l~~~~~~~ylid-L~~d~N~~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 598 ILYVFYQLLFHEETREVL--LKETEIPAYLID-LMHDKNAEIRKVCDNALDIIAEYDE 652 (708)
T ss_pred HHHHHHHHHcChHHHHHH--HhccchHHHHHH-HhcCCCHHHHHHHHHHHHHHHHhCH
Confidence 3333444444422 1211 233557788999 8999999999999999999987664
No 77
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=95.95 E-value=0.19 Score=65.54 Aligned_cols=240 Identities=17% Similarity=0.161 Sum_probs=145.5
Q ss_pred cchHHHHHHHHHHhhcCCchhchHHHHHHHHHhhcCCCChhHHhhhhhcccCCC-------chhHhhhHhHHHHHHHhhc
Q 000737 997 FQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIP-------SIHIHQYATQVLSVILALL 1069 (1322)
Q Consensus 997 ~~Ri~a~aflsEll~~~~~~~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~-------~~~v~~~~~~lL~all~~L 1069 (1322)
.-|+.|+-.+.+|-..- +.+..++.+++.+...+.|+.+.||..|+..|..+. +.+.+.+.++++|-+-..+
T Consensus 438 ~tK~~ALeLl~~lS~~i-~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~ 516 (1431)
T KOG1240|consen 438 QTKLAALELLQELSTYI-DDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLL 516 (1431)
T ss_pred hhHHHHHHHHHHHhhhc-chHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhh
Confidence 34566766666654432 345778889999999999999999999999888542 3566789999999999999
Q ss_pred ccCCh-HHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccc--cccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHH
Q 000737 1070 DDLDE-SVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNL--QVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIH 1146 (1322)
Q Consensus 1070 ~d~d~-~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpf--fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~ 1146 (1322)
.|.+. .|+..=...|+.+-.. ...++..++++|-- .++++.+ +. .....+.-.++++
T Consensus 517 ~d~~~~~vRiayAsnla~LA~t------A~rFle~~q~~~~~g~~n~~nse---------t~-----~~~~~~~~~~~L~ 576 (1431)
T KOG1240|consen 517 NDSSAQIVRIAYASNLAQLAKT------AYRFLELTQELRQAGMLNDPNSE---------TA-----PEQNYNTELQALH 576 (1431)
T ss_pred ccCccceehhhHHhhHHHHHHH------HHHHHHHHHHHHhcccccCcccc---------cc-----cccccchHHHHHH
Confidence 88543 3444444555554321 23455666766654 5555554 11 1122233333333
Q ss_pred HhHHHHHH-hccCCChhHHHHHHHHHHhhcchhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHH
Q 000737 1147 AMLPRLIL-HIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGST 1225 (1322)
Q Consensus 1147 ~~LvpLLl-HL~D~~~~V~~ack~tL~~~a~~L~~~l~~lf~~~~~~~~~~l~~~~f~~~~~k~L~~~~~~~~~~~l~~~ 1225 (1322)
..+--.+. -|.|+.+-|+++=-..++..+.| +.+.-.+ +..++..
T Consensus 577 ~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~F--------------------------------FGk~ksN--D~iLshL 622 (1431)
T KOG1240|consen 577 HTVEQMVSSLLSDSPPIVKRALLESIIPLCVF--------------------------------FGKEKSN--DVILSHL 622 (1431)
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH--------------------------------hhhcccc--cchHHHH
Confidence 33322222 34688888877655554444433 2221111 1134456
Q ss_pred HhhhcCCChhhHHHHHHHHHHhcccCchhhhhhccHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhc
Q 000737 1226 IQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSIN 1296 (1322)
Q Consensus 1226 l~ylkS~~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~ 1296 (1322)
+.|+++-.+.+|.|=---|-++--.+..+- -.|.+.+-|+. =+.|+++.|-..|.+++..|.|...
T Consensus 623 iTfLNDkDw~LR~aFfdsI~gvsi~VG~rs----~seyllPLl~Q-~ltD~EE~Viv~aL~~ls~Lik~~l 688 (1431)
T KOG1240|consen 623 ITFLNDKDWRLRGAFFDSIVGVSIFVGWRS----VSEYLLPLLQQ-GLTDGEEAVIVSALGSLSILIKLGL 688 (1431)
T ss_pred HHHhcCccHHHHHHHHhhccceEEEEeeee----HHHHHHHHHHH-hccCcchhhHHHHHHHHHHHHHhcc
Confidence 679999999899752211211111111111 12556777776 6889999999999999999987644
No 78
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=95.91 E-value=4.9 Score=49.25 Aligned_cols=225 Identities=17% Similarity=0.178 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHH-------hCcHHHHHHHHh--cCCCC--chhhHHHhHHHHHHHHhhhC---ChhH-HHHHHHHHhhhc
Q 000737 928 AILTSFQAFCEC-------VGDLEMRKILAR--DGEQN--DKEKWINLIGDVAGCVSIKR---PKEV-QTICLILTKSIN 992 (1322)
Q Consensus 928 ~aleAlk~ll~~-------~g~~~~~~~Le~--~~~w~--~~~~~~~GV~lLar~l~~~~---~~~~-~~il~~l~~~l~ 992 (1322)
.=+.||++|... -.+++..+++.. ...|. +.+--+...+=|.+-|.-+. ++.+ ..+..+...+++
T Consensus 194 vRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mk 273 (858)
T COG5215 194 VRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMK 273 (858)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445667776663 134444444443 24666 34444444444566665442 2333 344455667888
Q ss_pred ccCccchHHHHHHHHHHhhcCCchhchHHHHHHHHHhhcCCCChhHHhhhhhcccCCCchhHhhhHhHHHHHHHhhcccC
Q 000737 993 RQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDL 1072 (1322)
Q Consensus 993 s~~~~~Ri~a~aflsEll~~~~~~~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~~~v~~~~~~lL~all~~L~d~ 1072 (1322)
|+++.-.+-|+-|-+-....-.+.+..++ -+. +.|. . -.|. .+.-...++|-+++.|...
T Consensus 274 s~nd~va~qavEfWsticeEeid~~~e~~--------~~p-e~p~-q---n~~f-------a~aav~dvlP~lL~LL~~q 333 (858)
T COG5215 274 SQNDEVAIQAVEFWSTICEEEIDGEMEDK--------YLP-EVPA-Q---NHGF-------ARAAVADVLPELLSLLEKQ 333 (858)
T ss_pred CcchHHHHHHHHHHHHHHHHHhhhHHHHh--------hcc-cCch-h---hcch-------HHHHHHHHHHHHHHHHHhc
Confidence 88888777777766443222111111111 110 1111 0 0111 1112345788888888764
Q ss_pred Ch-------HHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccCCcchHhHHHHH
Q 000737 1073 DE-------SVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQI 1145 (1322)
Q Consensus 1073 d~-------~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv 1145 (1322)
++ ++-+.|-.+|.-.-+..++.-++|++-=+=. -...++..-|.+|.-+||++.. |.++..+..-|
T Consensus 334 ~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEq----ni~~~~w~nreaavmAfGSvm~---gp~~~~lT~~V 406 (858)
T COG5215 334 GEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQ----NIRSESWANREAAVMAFGSVMH---GPCEDCLTKIV 406 (858)
T ss_pred CCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHH----hccCchhhhHHHHHHHhhhhhc---CccHHHHHhhH
Confidence 32 2778888888877777777777775543333 3446889999999999999987 77888887888
Q ss_pred HHhHHHHHHhccCCChhHHHHHHHHHHhhcchhh
Q 000737 1146 HAMLPRLILHIYDDDLSVRQACRNTLKQVAPFME 1179 (1322)
Q Consensus 1146 ~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~ 1179 (1322)
++.++.++.-..|++.-|...+..+++++|.++.
T Consensus 407 ~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va 440 (858)
T COG5215 407 PQALPGIENEMSDSCLWVKSTTAWCFGAIADHVA 440 (858)
T ss_pred HhhhHHHHHhcccceeehhhHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999986644
No 79
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.65 E-value=0.21 Score=61.47 Aligned_cols=247 Identities=17% Similarity=0.141 Sum_probs=142.5
Q ss_pred HHHHHHHhhhcccCccchHHHHHHHHHHhhcCCc-------hhchHHHHHHHHHhhcCCCChhHHhhhhhcccCCCc--h
Q 000737 982 TICLILTKSINRQQRFQREAAAAALSEFVRYSGG-------FDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS--I 1052 (1322)
Q Consensus 982 ~il~~l~~~l~s~~~~~Ri~a~aflsEll~~~~~-------~~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~--~ 1052 (1322)
.+-+...+.++..++.-|++|+-.+.-.-|-++. ...+.+.....++..++|-+-.||+.|.+.||.+.. +
T Consensus 234 ~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe 313 (823)
T KOG2259|consen 234 ACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE 313 (823)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHH
Confidence 3344455666777888888886555444442211 235557788899999999999999999999998863 2
Q ss_pred hH--hhhHhHHHH-------------HHHhhccc-----CChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccc
Q 000737 1053 HI--HQYATQVLS-------------VILALLDD-----LDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQV 1112 (1322)
Q Consensus 1053 ~v--~~~~~~lL~-------------all~~L~d-----~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffe 1112 (1322)
++ .-+-+.++. .+++..+= .+.+|.-|. .+.+..+-+----|-.+-.=||
T Consensus 314 e~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee----------~d~~~~siI~sGACGA~VhGlE 383 (823)
T KOG2259|consen 314 EIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEE----------DDEEEESIIPSGACGALVHGLE 383 (823)
T ss_pred HHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhh----------ccccccccccccccceeeeech
Confidence 21 011122222 22222200 012222222 1111111111111233345689
Q ss_pred cCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHHhccCCChhHHHHHHHHHHhhcchhhhhhhhhhccccCC
Q 000737 1113 SMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFN 1192 (1322)
Q Consensus 1113 de~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~~~l~~lf~~~~~~ 1192 (1322)
||-.+||.+|+.-++.|+-...+ |-.. ++--|+=-++|+-..||-.|-+||..++..+. +
T Consensus 384 DEf~EVR~AAV~Sl~~La~ssP~-----FA~~---aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~-----------i- 443 (823)
T KOG2259|consen 384 DEFYEVRRAAVASLCSLATSSPG-----FAVR---ALDFLVDMFNDEIEVVRLKAIFALTMISVHLA-----------I- 443 (823)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCC-----cHHH---HHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe-----------e-
Confidence 99999999999999999974433 2222 22333335789999999999999999886411 1
Q ss_pred CCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhhHHHHHHHHHHhcccCchhhhhhccHHHHHHHHHHHh
Q 000737 1193 SDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKL 1272 (1322)
Q Consensus 1193 ~~~~l~~~~f~~~~~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~L 1272 (1322)
. ++-++.+++ -+.+..++||.++--+++.. .+++.++-.+-+..+...|.. -
T Consensus 444 -~-----eeql~~il~-------------------~L~D~s~dvRe~l~elL~~~--~~~d~~~i~m~v~~lL~~L~k-y 495 (823)
T KOG2259|consen 444 -R-----EEQLRQILE-------------------SLEDRSVDVREALRELLKNA--RVSDLECIDMCVAHLLKNLGK-Y 495 (823)
T ss_pred -c-----HHHHHHHHH-------------------HHHhcCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHhhh-C
Confidence 1 334444444 44556778888777655533 233444322333444444444 3
Q ss_pred ccCCChHHHHHHHH
Q 000737 1273 SQSADAIVRATCSS 1286 (1322)
Q Consensus 1273 l~Dpdp~VR~~Aa~ 1286 (1322)
=+|.|...+|.+-.
T Consensus 496 PqDrd~i~~cm~~i 509 (823)
T KOG2259|consen 496 PQDRDEILRCMGRI 509 (823)
T ss_pred CCCcHHHHHHHHHH
Confidence 46888888775543
No 80
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.63 E-value=0.29 Score=59.37 Aligned_cols=209 Identities=15% Similarity=0.135 Sum_probs=132.4
Q ss_pred hhhHHHhHHHHHHHHhhhC-ChhHHHHHHHHHhhhcccCccchHHHH-HHHHH-HhhcCCchhchHHHHHHHHHhhcCCC
Q 000737 958 KEKWINLIGDVAGCVSIKR-PKEVQTICLILTKSINRQQRFQREAAA-AALSE-FVRYSGGFDSLLEQMVEALCRHVSDE 1034 (1322)
Q Consensus 958 ~~~~~~GV~lLar~l~~~~-~~~~~~il~~l~~~l~s~~~~~Ri~a~-aflsE-ll~~~~~~~~ll~~~~~~L~~~l~D~ 1034 (1322)
..+|..-+..|-.-.-++. ..++-+++..+.+.=+.+.-+.|+... +.|.+ .+..-+.-..+.+.++..+.+++..+
T Consensus 24 ~aGhrk~~a~l~~~~t~~~f~~~flr~vn~IL~~Kk~~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~esk 103 (885)
T COG5218 24 SAGHRKSLAELMEMLTAHEFSEEFLRVVNTILACKKNPSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESK 103 (885)
T ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccccCCCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCc
Confidence 3445554444433322222 235666777777776667777777652 22333 22221122466778899999999999
Q ss_pred ChhHHhhhhhcccCCCc--hhH-hhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcc--cchhhHHhHHHHhcc
Q 000737 1035 SPTVRGLCLRGLVQIPS--IHI-HQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKD--AVEPILLNLSVRLRN 1109 (1322)
Q Consensus 1035 ~~~VR~lalrGLg~l~~--~~v-~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~--~~~~~l~~l~~~lrp 1109 (1322)
+..||.-+++-|+-+.. .++ .-....++..+.+-+.|.+..|+.+|+.+|++.=+--+.. .+...+..+
T Consensus 104 dk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~~~n~l~~~------ 177 (885)
T COG5218 104 DKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENRIVNLLKDI------ 177 (885)
T ss_pred chhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHHHHHHHHHH------
Confidence 99999999988885543 111 1245668888999999999999999999999986433222 233444443
Q ss_pred ccccCChhHHHHHHHHH-------HHHhh---ccCCcchHhHHHHHHHhH-----------HHHHH-hccCCChhHHHHH
Q 000737 1110 LQVSMNVKMRRNAFAAF-------GALSN---FGVGSQREAFLEQIHAML-----------PRLIL-HIYDDDLSVRQAC 1167 (1322)
Q Consensus 1110 ffede~~~vR~aAi~lf-------G~L~~---~~~~~~~~~~~eqv~~~L-----------vpLLl-HL~D~~~~V~~ac 1167 (1322)
...|++++||.+|.--. +-+.. -+.+..+.-+.+.++..+ +-|+- -|.|-+.+|+.||
T Consensus 178 vqnDPS~EVRr~allni~vdnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi~kri~l~ewgl~dRe~sv~~a~ 257 (885)
T COG5218 178 VQNDPSDEVRRLALLNISVDNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLSIDKRILLMEWGLLDREFSVKGAL 257 (885)
T ss_pred HhcCcHHHHHHHHHHHeeeCCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccccceehhhhhcchhhhhhHHHHH
Confidence 45899999999997532 22222 122334455555555444 11222 5789999999999
Q ss_pred HHHHH
Q 000737 1168 RNTLK 1172 (1322)
Q Consensus 1168 k~tL~ 1172 (1322)
++++.
T Consensus 258 ~d~ia 262 (885)
T COG5218 258 VDAIA 262 (885)
T ss_pred HHHHH
Confidence 99973
No 81
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=95.47 E-value=0.14 Score=65.83 Aligned_cols=166 Identities=15% Similarity=0.217 Sum_probs=91.8
Q ss_pred HHHHHHHHHhhhcccC----ccchHHHHHHHHHHhhc-CCc--------------hhchHHHHHHHHHhhcCCCChhHHh
Q 000737 980 VQTICLILTKSINRQQ----RFQREAAAAALSEFVRY-SGG--------------FDSLLEQMVEALCRHVSDESPTVRG 1040 (1322)
Q Consensus 980 ~~~il~~l~~~l~s~~----~~~Ri~a~aflsEll~~-~~~--------------~~~ll~~~~~~L~~~l~D~~~~VR~ 1040 (1322)
-..++..+..+++++. ..-|.+|+..++.+++. |.. ...+.+.+...|.......+...+.
T Consensus 429 t~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 508 (618)
T PF01347_consen 429 TEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKI 508 (618)
T ss_dssp -HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHH
T ss_pred CHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHH
Confidence 3566666666665543 33456788888888763 111 2345555666666667777888888
Q ss_pred hhhhcccCCCchhHhhhHhHHHHHHHhhcccC---ChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccc-cCCh
Q 000737 1041 LCLRGLVQIPSIHIHQYATQVLSVILALLDDL---DESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQV-SMNV 1116 (1322)
Q Consensus 1041 lalrGLg~l~~~~v~~~~~~lL~all~~L~d~---d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffe-de~~ 1116 (1322)
++|+||||++. +..++.+..-+.+. ...++..|+.+|+++...- ...+.+++..| |++ .|+.
T Consensus 509 ~~LkaLgN~g~-------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~-~~~v~~~l~~I------~~n~~e~~ 574 (618)
T PF01347_consen 509 VYLKALGNLGH-------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC-PEKVREILLPI------FMNTTEDP 574 (618)
T ss_dssp HHHHHHHHHT--------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT--HHHHHHHHHHH------HH-TTS-H
T ss_pred HHHHHhhccCC-------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC-cHHHHHHHHHH------hcCCCCCh
Confidence 89999999884 23466666666655 3558888888888774432 33344444443 333 3557
Q ss_pred hHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHHhccCCChhHHHHHHHHH
Q 000737 1117 KMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTL 1171 (1322)
Q Consensus 1117 ~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL 1171 (1322)
+||.+|+.++=.- ........ .+.-.+- .|++.+|+.....+|
T Consensus 575 EvRiaA~~~lm~~------~P~~~~l~----~i~~~l~--~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 575 EVRIAAYLILMRC------NPSPSVLQ----RIAQSLW--NEPSNQVASFVYSHL 617 (618)
T ss_dssp HHHHHHHHHHHHT---------HHHHH----HHHHHHT--T-S-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHhc------CCCHHHHH----HHHHHHh--hCchHHHHHHHHHhc
Confidence 7888887554331 11122222 2222221 477777777665554
No 82
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.33 E-value=1.9 Score=53.78 Aligned_cols=139 Identities=17% Similarity=0.261 Sum_probs=102.2
Q ss_pred HhhhcccCccchHHHHHHHHHHhhcCCchhchHHHHHHHHHhhcCCCChhHHhhhhhcccCCCchhH-hhhHhHHHHHHH
Q 000737 988 TKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHI-HQYATQVLSVIL 1066 (1322)
Q Consensus 988 ~~~l~s~~~~~Ri~a~aflsEll~~~~~~~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~~~v-~~~~~~lL~all 1066 (1322)
...|+|+--..+..+-.|++-|++.. ..+++-+++.+.+-+...||+.-.+||.-+||++..+. ..+...+=..++
T Consensus 80 V~LLss~kysEKqIGYl~is~L~n~n---~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlLv 156 (938)
T KOG1077|consen 80 VNLLSSNKYSEKQIGYLFISLLLNEN---SDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIPKLLV 156 (938)
T ss_pred HHHhhcCCccHHHHhHHHHHHHHhcc---hHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHh
Confidence 35667777788888888888888865 45667788888899999999999999999999998443 334443333333
Q ss_pred hhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccC
Q 000737 1067 ALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGV 1134 (1322)
Q Consensus 1067 ~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~ 1134 (1322)
++ +..+-|.-.|..+|-+++..-+ +-+.+- .-+.|+..+++|..-.|-.+|+.+.-.+++.-.
T Consensus 157 S~--~~~~~vkqkaALclL~L~r~sp-Dl~~~~--~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p 219 (938)
T KOG1077|consen 157 SG--SSMDYVKQKAALCLLRLFRKSP-DLVNPG--EWAQRIVHLLDDQHMGVVTAATSLIEALVKKNP 219 (938)
T ss_pred CC--cchHHHHHHHHHHHHHHHhcCc-cccChh--hHHHHHHHHhCccccceeeehHHHHHHHHHcCC
Confidence 33 1123477888999999997632 222221 346788889999999999999999999998443
No 83
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.31 E-value=18 Score=49.39 Aligned_cols=285 Identities=15% Similarity=0.144 Sum_probs=155.7
Q ss_pred chhhHHHhHHHHHHHHhhhCChhHH-HHHHHHHhhhccc----CccchHHHHHHHHHHh----hcCCchhchHHHHHHHH
Q 000737 957 DKEKWINLIGDVAGCVSIKRPKEVQ-TICLILTKSINRQ----QRFQREAAAAALSEFV----RYSGGFDSLLEQMVEAL 1027 (1322)
Q Consensus 957 ~~~~~~~GV~lLar~l~~~~~~~~~-~il~~l~~~l~s~----~~~~Ri~a~aflsEll----~~~~~~~~ll~~~~~~L 1027 (1322)
+...+..-+..|+ ..+.-+|..+. .=+..+.|||.+. .+.+=+-.++++-|.+ +.+ .+.++.++=..|
T Consensus 1050 ~~~~~~~~lstL~-~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~--sesfL~sLEe~L 1126 (1692)
T KOG1020|consen 1050 SEVRLLAYLSTLF-VFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANP--SESFLASLEEDL 1126 (1692)
T ss_pred chhHHHHHHHHHH-HHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccc--hHHHHHHHHHHH
Confidence 5566777777755 55666776554 7778899999988 4444455555555532 221 123333333333
Q ss_pred HhhcCCCChhHHhhhhhcccCCCchhHhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcc-----cchhhHHh
Q 000737 1028 CRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKD-----AVEPILLN 1102 (1322)
Q Consensus 1028 ~~~l~D~~~~VR~lalrGLg~l~~~~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~-----~~~~~l~~ 1102 (1322)
+..+--- +-..+.+||.+|+.+..+.... +.-..+..
T Consensus 1127 ~~~i~k~--------------------------------------g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k 1168 (1692)
T KOG1020|consen 1127 LKRIVKM--------------------------------------GMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLK 1168 (1692)
T ss_pred HHHHHhc--------------------------------------chHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHH
Confidence 3333111 1223334444444444321100 01111112
Q ss_pred HHHHhccccccC----ChhHHHHHHHHHHHHhhc-------cCCcchHhHHHHHH-HhHHHHHHhccCCChhHHHHHHHH
Q 000737 1103 LSVRLRNLQVSM----NVKMRRNAFAAFGALSNF-------GVGSQREAFLEQIH-AMLPRLILHIYDDDLSVRQACRNT 1170 (1322)
Q Consensus 1103 l~~~lrpffede----~~~vR~aAi~lfG~L~~~-------~~~~~~~~~~eqv~-~~LvpLLlHL~D~~~~V~~ack~t 1170 (1322)
....++.-++++ +...=.-++.+.|-++++ .+|+....+.+.+. ..+..|..|.++.+-.+|+.+-.+
T Consensus 1169 ~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~ 1248 (1692)
T KOG1020|consen 1169 LLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALIN 1248 (1692)
T ss_pred HHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 222233333333 333344578888988883 23343332333333 344666778999999999999999
Q ss_pred HHhhcc----hhhh-hhhhhhccccCCCCC-C-C-------ChHH-----------------------------------
Q 000737 1171 LKQVAP----FMEI-GVYGIFNSHCFNSDH-R-S-------DYET----------------------------------- 1201 (1322)
Q Consensus 1171 L~~~a~----~L~~-~l~~lf~~~~~~~~~-~-l-------~~~~----------------------------------- 1201 (1322)
|+.++. ++-. .+..++++- +.+.. . . +++.
T Consensus 1249 Lg~~ci~hp~l~~~~~v~nly~~i-la~~n~~~~~ki~~l~n~~~yL~eee~~l~~~~~~w~~~~k~edlkem~~v~sg~ 1327 (1692)
T KOG1020|consen 1249 LGFICIQHPSLFTSREVLNLYDEI-LADDNSDIKSKIQLLQNLELYLLEEEKKLRNKGKNWTKSNKSEDLKEMLDVSSGM 1327 (1692)
T ss_pred HHHHHhhCchhhhhHHHHHHHHHH-HhhhcccHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhccccccc
Confidence 988762 2222 333333322 11110 0 0 0111
Q ss_pred HHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhhHHHHHHHHHHhcc-cCchhhhhhccHHHHHHHHHHHhccCCChHH
Q 000737 1202 FVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILC-LCDDQHILSLFYTQVFGLLVVKLSQSADAIV 1280 (1322)
Q Consensus 1202 f~~~~~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~-~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~V 1280 (1322)
+-++.|.. -++.|+.+.+.-+=+-+-.+|.+|+..+-.+++ .+ +..-.-++.|+. |-.||.+..
T Consensus 1328 ~s~~~~~~-------i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~QGL-------VhP~~cvPtLIA-L~Tdp~~~~ 1392 (1692)
T KOG1020|consen 1328 GSSDGVSA-------IMQLFLDNILESCLDRDLQVRLVAIKVLKLILNQGL-------VHPVHCVPTLIA-LETDPSQAI 1392 (1692)
T ss_pred ccccchHH-------HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccC-------CCccchhhhhee-ecCChHHHH
Confidence 22222222 455677888887777888999999999988774 22 222334677888 889999999
Q ss_pred HHHHHHHHHHHH-HHhccc
Q 000737 1281 RATCSSSLGWLL-KSINSH 1298 (1322)
Q Consensus 1281 R~~Aa~aL~~l~-k~~~~~ 1298 (1322)
|..|-+-|..+. |+...+
T Consensus 1393 r~~Ad~LL~eid~kY~gfv 1411 (1692)
T KOG1020|consen 1393 RHVADELLKEIDEKYEGFV 1411 (1692)
T ss_pred HHHHHHHHHHHHHhhHHHH
Confidence 998888887776 444443
No 84
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=95.27 E-value=2.5 Score=51.65 Aligned_cols=266 Identities=13% Similarity=0.148 Sum_probs=161.6
Q ss_pred HHHHHHHhhcCCchhchHHHHHHHHHhhcCCCChhHHhhhhhcccCCCchh-HhhhHhHHHHHHHhhcccCChHHHHHHH
Q 000737 1003 AAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIH-IHQYATQVLSVILALLDDLDESVQLTAV 1081 (1322)
Q Consensus 1003 ~aflsEll~~~~~~~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~~~-v~~~~~~lL~all~~L~d~d~~V~leam 1081 (1322)
+-+.++++.... ..+.++.+.|..|++|--..|-.-+.|.+..++.+. ...+..+.+.++-..|......-+-.||
T Consensus 248 vr~~~~ll~~n~---q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~ 324 (898)
T COG5240 248 VRATVELLKENS---QALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAM 324 (898)
T ss_pred HHHHHHHHHhCh---HHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 444566665432 344667889999999965555444444444333211 1123345566666666555556778899
Q ss_pred HHHHHHhccCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHHhccCCCh
Q 000737 1082 SCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDL 1161 (1322)
Q Consensus 1082 ~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~ 1161 (1322)
+.|..+-..-+ +.++..=+ .+-.+..|+|-.+---||. .|.+.|..+. .+.+++.++.++--..|.=.
T Consensus 325 Riln~lam~~P-~kv~vcN~----evEsLIsd~Nr~IstyAIT---tLLKTGt~e~----idrLv~~I~sfvhD~SD~FK 392 (898)
T COG5240 325 RILNQLAMKYP-QKVSVCNK----EVESLISDENRTISTYAIT---TLLKTGTEET----IDRLVNLIPSFVHDMSDGFK 392 (898)
T ss_pred HHHHHHHhhCC-ceeeecCh----hHHHHhhcccccchHHHHH---HHHHcCchhh----HHHHHHHHHHHHHhhccCce
Confidence 99999875433 22322211 2356777777666555554 5666443332 23444555555555566555
Q ss_pred hHHHHHHHHHHhhcchhhh-hhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhhHHHH
Q 000737 1162 SVRQACRNTLKQVAPFMEI-GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANA 1240 (1322)
Q Consensus 1162 ~V~~ack~tL~~~a~~L~~-~l~~lf~~~~~~~~~~l~~~~f~~~~~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA 1240 (1322)
-++--+-.+|+-.-|. +| ..-..+..-+.++| ++.|-..+-|...-+++.-|+.-...+...-.|..+..- -+-+
T Consensus 393 iI~ida~rsLsl~Fp~-k~~s~l~FL~~~L~~eG-g~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey--~~I~ 468 (898)
T COG5240 393 IIAIDALRSLSLLFPS-KKLSYLDFLGSSLLQEG-GLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEY--HQIT 468 (898)
T ss_pred EEeHHHHHHHHhhCcH-HHHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcch--hHHH
Confidence 5555555555554443 33 22233333323444 566655555656667788888877778877788877654 3457
Q ss_pred HHHHHHhcccCchhhhhhccHHHHHHHHHHHhccCCChHHHHHHHHHHHHHH
Q 000737 1241 IYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1292 (1322)
Q Consensus 1241 ~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1292 (1322)
+..+|.+...-|...-.....-.+++.++- +...||.+|.+||..++
T Consensus 469 vrIL~iLG~EgP~a~~P~~yvrhIyNR~iL-----EN~ivRsaAv~aLskf~ 515 (898)
T COG5240 469 VRILGILGREGPRAKTPGKYVRHIYNRLIL-----ENNIVRSAAVQALSKFA 515 (898)
T ss_pred HHHHHHhcccCCCCCCcchHHHHHHHHHHH-----hhhHHHHHHHHHHHHhc
Confidence 888999988777555455667888888864 78999999999997766
No 85
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.16 E-value=0.27 Score=60.51 Aligned_cols=104 Identities=16% Similarity=0.152 Sum_probs=74.2
Q ss_pred HHHHHHhhcCCCChhHHhhhhhcccCCCchhHhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccC---------Cc
Q 000737 1023 MVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSS---------SK 1093 (1322)
Q Consensus 1023 ~~~~L~~~l~D~~~~VR~lalrGLg~l~~~~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l---------~~ 1093 (1322)
+...|.....|.++.||..|+.||=.+.. +-++.+.+-.-..+.+.|.+++|+.+|++.+.-..+.- +.
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~e--g~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~ 276 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLALSE--GFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE 276 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhcc--cccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence 33346666788899999999999877765 44555666677778888888999999988877666543 11
Q ss_pred ccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhc
Q 000737 1094 DAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNF 1132 (1322)
Q Consensus 1094 ~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~ 1132 (1322)
+-....+.+||. -..|-+-.||.-|+.+||..-..
T Consensus 277 kl~D~aF~~vC~----~v~D~sl~VRV~AaK~lG~~~~v 311 (823)
T KOG2259|consen 277 KLKDAAFSSVCR----AVRDRSLSVRVEAAKALGEFEQV 311 (823)
T ss_pred hhHHHHHHHHHH----HHhcCceeeeehHHHHhchHHHh
Confidence 122344445554 44577888999999999998763
No 86
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.12 E-value=0.74 Score=57.58 Aligned_cols=63 Identities=14% Similarity=0.042 Sum_probs=46.3
Q ss_pred hhcCCChhhHHHHHHHHHHhcccCchhhhhhccHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhcccc
Q 000737 1228 AFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSINSHS 1299 (1322)
Q Consensus 1228 ylkS~~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~~~~ 1299 (1322)
..+|-.++||..||+.+|..--.- +....++-|.. |-+||.-.||..|-.|++.+.-.++.-+
T Consensus 597 Lses~N~HVRyGaA~ALGIaCAGt--------G~~eAi~lLep-l~~D~~~fVRQgAlIa~amIm~Q~t~~~ 659 (929)
T KOG2062|consen 597 LSESYNPHVRYGAAMALGIACAGT--------GLKEAINLLEP-LTSDPVDFVRQGALIALAMIMIQQTEQL 659 (929)
T ss_pred HhhhcChhhhhhHHHHHhhhhcCC--------CcHHHHHHHhh-hhcChHHHHHHHHHHHHHHHHHhccccc
Confidence 345678899999999999664322 23334555656 8889999999999999999886655444
No 87
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=95.08 E-value=0.78 Score=58.75 Aligned_cols=210 Identities=16% Similarity=0.154 Sum_probs=147.9
Q ss_pred CCC-chhhHHHhHHHHHHHHhhhCChhHHHHHHHHHhhhcccCccchHHHHHHHHHHhhcCC-c--------hhchHHH-
Q 000737 954 EQN-DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSG-G--------FDSLLEQ- 1022 (1322)
Q Consensus 954 ~w~-~~~~~~~GV~lLar~l~~~~~~~~~~il~~l~~~l~s~~~~~Ri~a~aflsEll~~~~-~--------~~~ll~~- 1022 (1322)
||- ..+-..++..-+.+++.-.+.+...++...+.-.|++++-..- |.-.|+=++..+. . .+.+-++
T Consensus 786 gs~dls~~al~~l~Wv~KaLl~R~~~~s~~ia~klld~Ls~~~~g~~--aa~~fsiim~D~~~~~~r~~~a~~riLykQR 863 (1030)
T KOG1967|consen 786 GSLDLSEIALTVLAWVTKALLLRNHPESSEIAEKLLDLLSGPSTGSP--AAKLFSIIMSDSNPLLKRKGHAEPRILYKQR 863 (1030)
T ss_pred CCcchhhHHHHHHHHHHHHHHHcCCcccchHHHHHHHhcCCccccch--HHHhhHhhhccChHHhhhccccchhHHHHHH
Confidence 664 4455556666667787777777888999999999998664432 2233333333221 1 1123333
Q ss_pred ----HHHHHHhhcCCCChhHHhhhhhcccCC----CchhHhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhc---cC
Q 000737 1023 ----MVEALCRHVSDESPTVRGLCLRGLVQI----PSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILK---SS 1091 (1322)
Q Consensus 1023 ----~~~~L~~~l~D~~~~VR~lalrGLg~l----~~~~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~---~l 1091 (1322)
+++.|.+...-....+|..=+.||.++ +.+-+-...+.++|.++.+|.=.|-.|..++...+...+. .+
T Consensus 864 fF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL 943 (1030)
T KOG1967|consen 864 FFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETL 943 (1030)
T ss_pred HHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcccc
Confidence 888999999877778888888888754 4455666778999999999998888888888888877764 44
Q ss_pred CcccchhhHHhHHHHhccccccCC---hhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHHhccCCChhHHHHHH
Q 000737 1092 SKDAVEPILLNLSVRLRNLQVSMN---VKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACR 1168 (1322)
Q Consensus 1092 ~~~~~~~~l~~l~~~lrpffede~---~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack 1168 (1322)
..++++.+.+.+.. +=.|.+ .-||..|+..+|.|.++.....-.+|+.+|.++|.|- |.|+---||+.|-
T Consensus 944 ~t~~~~Tlvp~lLs----ls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~---LdDkKRlVR~eAv 1016 (1030)
T KOG1967|consen 944 QTEHLSTLVPYLLS----LSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKI---LDDKKRLVRKEAV 1016 (1030)
T ss_pred chHHHhHHHHHHHh----cCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhc---cCcHHHHHHHHHH
Confidence 44555544443322 222222 6799999999999999878888899999999999886 4677778999887
Q ss_pred HHHH
Q 000737 1169 NTLK 1172 (1322)
Q Consensus 1169 ~tL~ 1172 (1322)
+|=.
T Consensus 1017 ~tR~ 1020 (1030)
T KOG1967|consen 1017 DTRQ 1020 (1030)
T ss_pred HHhh
Confidence 7643
No 88
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.06 E-value=0.42 Score=60.62 Aligned_cols=203 Identities=12% Similarity=0.125 Sum_probs=121.2
Q ss_pred HHhHHHHHHHHhh--hCCh--hHHHHHHHHHhhhcccCccchHHHHHHHHHHhhcCCchhchHHHHHHHHHh----hcCC
Q 000737 962 INLIGDVAGCVSI--KRPK--EVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCR----HVSD 1033 (1322)
Q Consensus 962 ~~GV~lLar~l~~--~~~~--~~~~il~~l~~~l~s~~~~~Ri~a~aflsEll~~~~~~~~ll~~~~~~L~~----~l~D 1033 (1322)
-.|++.|++ +.+ ++++ .-..++....-++...+.--..-|+--++-|..-- .+.+++-|.+ --+.
T Consensus 745 ~~gL~~l~~-l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy------~e~il~dL~e~Y~s~k~k 817 (982)
T KOG4653|consen 745 GYGLQMLRH-LIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVY------PEDILPDLSEEYLSEKKK 817 (982)
T ss_pred HHHHHHHHH-HHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhc------chhhHHHHHHHHHhcccC
Confidence 345666444 344 3344 33577788888888777777777777777765431 1223333333 2222
Q ss_pred CChhHHhhhhhcccCCCc---hhHhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccc
Q 000737 1034 ESPTVRGLCLRGLVQIPS---IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNL 1110 (1322)
Q Consensus 1034 ~~~~VR~lalrGLg~l~~---~~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpf 1110 (1322)
+-+..|...=.+++++.. +=+.+|...++..+++|.+|+|..-++.+|..|+.+...+..+ ++.++.+++..|-..
T Consensus 818 ~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~-vsd~~~ev~~~Il~l 896 (982)
T KOG4653|consen 818 LQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQ-VSDFFHEVLQLILSL 896 (982)
T ss_pred CCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHH
Confidence 213333332244444433 3356788899999999999998889999999999998877533 444666665555322
Q ss_pred -cccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHH--hccCCChhHHHHHHHHHHh
Q 000737 1111 -QVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLIL--HIYDDDLSVRQACRNTLKQ 1173 (1322)
Q Consensus 1111 -fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLl--HL~D~~~~V~~ack~tL~~ 1173 (1322)
-.|.+..||.+|+.+..++.+. .|...-|+...+.-=+.-.+. |-.|++..++.-++.++..
T Consensus 897 ~~~d~s~~vRRaAv~li~~lL~~-tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~lee 961 (982)
T KOG4653|consen 897 ETTDGSVLVRRAAVHLLAELLNG-TGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEE 961 (982)
T ss_pred HccCCchhhHHHHHHHHHHHHhc-cchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 1278899999999999999983 344445544322211222222 3344444455444444444
No 89
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=94.96 E-value=1.9 Score=51.67 Aligned_cols=208 Identities=13% Similarity=0.068 Sum_probs=121.7
Q ss_pred HhHHHHHHHhhcccCChH-HHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhc--cC
Q 000737 1058 ATQVLSVILALLDDLDES-VQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNF--GV 1134 (1322)
Q Consensus 1058 ~~~lL~all~~L~d~d~~-V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~--~~ 1134 (1322)
+.+..++++.|=+|..+. |..+|++++.-.+-+-.-.....+..+-+.-+..-++|..-.+|+.|+-..|.+... .+
T Consensus 388 ~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~ 467 (728)
T KOG4535|consen 388 RQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVN 467 (728)
T ss_pred chhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcC
Confidence 446788888888865444 777788777765544333444445555555555556666788999999999988762 34
Q ss_pred CcchHhHHHHHHHhHHHHHHhc---cCC-ChhHHHHHHHHHHhhcchhhhhhhhhhccccCCCCCCCChHHHHHHHHHHH
Q 000737 1135 GSQREAFLEQIHAMLPRLILHI---YDD-DLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQF 1210 (1322)
Q Consensus 1135 ~~~~~~~~eqv~~~LvpLLlHL---~D~-~~~V~~ack~tL~~~a~~L~~~l~~lf~~~~~~~~~~l~~~~f~~~~~k~L 1210 (1322)
....+.+.+.+.+.+.--++.+ .|. +-.|+..+-.+|+....++....+--|.. ..++ +...-++.-.
T Consensus 468 ~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e--~~~~------~~~~l~~~v~ 539 (728)
T KOG4535|consen 468 MPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAE--IIEE------SIQALISTVL 539 (728)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHH--HHHH------HHHhccccee
Confidence 4555666666655554433322 222 33477777777777666555311100111 0000 0000000000
Q ss_pred HHhCcchHHHHHHHHHhhhcCCChhhHHHHHHHHHHhcccCchhhhhhccHHHHHHHHHHHhccCCChHHHHHHHHHHHH
Q 000737 1211 VQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGW 1290 (1322)
Q Consensus 1211 ~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~ 1290 (1322)
+- -.-.+|.||+..+|-+.+|-.-..-.+.=..+++++|..++.+-..--||..||.||..
T Consensus 540 --------------~~-----~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~v 600 (728)
T KOG4535|consen 540 --------------TE-----AAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSV 600 (728)
T ss_pred --------------cc-----cccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcC
Confidence 00 11248999999999998763211111122467899998855556888999999999876
Q ss_pred HH
Q 000737 1291 LL 1292 (1322)
Q Consensus 1291 l~ 1292 (1322)
-+
T Consensus 601 p~ 602 (728)
T KOG4535|consen 601 PG 602 (728)
T ss_pred CC
Confidence 54
No 90
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.78 E-value=0.96 Score=57.60 Aligned_cols=229 Identities=15% Similarity=0.169 Sum_probs=149.9
Q ss_pred HHHHhhcCCCChhHHhhhhhcccCCCc---hhHhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHH
Q 000737 1025 EALCRHVSDESPTVRGLCLRGLVQIPS---IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILL 1101 (1322)
Q Consensus 1025 ~~L~~~l~D~~~~VR~lalrGLg~l~~---~~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~ 1101 (1322)
+--...+.||-+-+|..+++-|..+.. ++-.....-++.+.++.|.|.|+-|=+.|++++..+-+.-++ + ++.
T Consensus 730 qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e-~---il~ 805 (982)
T KOG4653|consen 730 QEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE-D---ILP 805 (982)
T ss_pred HHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch-h---hHH
Confidence 344456789999999999999998875 223345566899999999999999999999988888776433 2 333
Q ss_pred hHHHHhccccccCC----hhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHHhccCCChhHHHHHHHHHHhhcch
Q 000737 1102 NLSVRLRNLQVSMN----VKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPF 1177 (1322)
Q Consensus 1102 ~l~~~lrpffede~----~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~ 1177 (1322)
.++. +.++++ .+.|..-=.+||.++. ..|+-...|++++.++...-+ .|++-.-|..+-..||.|+..
T Consensus 806 dL~e----~Y~s~k~k~~~d~~lkVGEai~k~~q-a~Gel~~~y~~~Li~tfl~gv---repd~~~RaSS~a~lg~Lcq~ 877 (982)
T KOG4653|consen 806 DLSE----EYLSEKKKLQTDYRLKVGEAILKVAQ-ALGELVFKYKAVLINTFLSGV---REPDHEFRASSLANLGQLCQL 877 (982)
T ss_pred HHHH----HHHhcccCCCccceehHHHHHHHHHH-HhccHHHHHHHHHHHHHHHhc---CCchHHHHHhHHHHHHHHHHH
Confidence 3332 222222 2333333488888887 446777778887666655443 377777788888888888765
Q ss_pred hhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhhHHHHHHHHHHhcccCchhhhh
Q 000737 1178 MEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHIL 1257 (1322)
Q Consensus 1178 L~~~l~~lf~~~~~~~~~~l~~~~f~~~~~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~~~~~~ 1257 (1322)
+.-.+ .+|+.+....+..--. -+..+.+|+||+..+-.+++....+.+.
T Consensus 878 ~a~~v-----------------sd~~~ev~~~Il~l~~--------------~d~s~~vRRaAv~li~~lL~~tg~dlLp 926 (982)
T KOG4653|consen 878 LAFQV-----------------SDFFHEVLQLILSLET--------------TDGSVLVRRAAVHLLAELLNGTGEDLLP 926 (982)
T ss_pred Hhhhh-----------------hHHHHHHHHHHHHHHc--------------cCCchhhHHHHHHHHHHHHhccchhhHH
Confidence 33211 1244444444432111 1566779999999999888755433321
Q ss_pred hc--cHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhc
Q 000737 1258 SL--FYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSIN 1296 (1322)
Q Consensus 1258 ~~--~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~ 1296 (1322)
-. ..-++...+......++|-.++-.|-.++..+.....
T Consensus 927 ilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a~l~ 967 (982)
T KOG4653|consen 927 ILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQAALE 967 (982)
T ss_pred HHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Confidence 00 0113334455556789999999999999988886655
No 91
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=94.65 E-value=1.1 Score=58.48 Aligned_cols=187 Identities=14% Similarity=0.138 Sum_probs=134.3
Q ss_pred hcccCChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHH
Q 000737 1068 LLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHA 1147 (1322)
Q Consensus 1068 ~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~ 1147 (1322)
.+.+.+=.-..||+.++-.++..-.......+.--++.-++.-+-|.|..|-..|...++.+++. ....|+.-+..
T Consensus 261 ~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~----lr~~~~~~~~~ 336 (815)
T KOG1820|consen 261 EMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKK----LRPLFRKYAKN 336 (815)
T ss_pred hhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHh----cchhhHHHHHh
Confidence 33444445666777777777665442233334444455556678899999999999999999983 34457778888
Q ss_pred hHHHHHHhccCCChhHHHHHHHHHHhhcchhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHh
Q 000737 1148 MLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQ 1227 (1322)
Q Consensus 1148 ~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~~~l~~lf~~~~~~~~~~l~~~~f~~~~~k~L~~~~~~~~~~~l~~~l~ 1227 (1322)
.+++++-.+.|.-+.++.+.+.++-.++. ...+..+....+.
T Consensus 337 v~p~lld~lkekk~~l~d~l~~~~d~~~n--------------------------------------s~~l~~~~~~I~e 378 (815)
T KOG1820|consen 337 VFPSLLDRLKEKKSELRDALLKALDAILN--------------------------------------STPLSKMSEAILE 378 (815)
T ss_pred hcchHHHHhhhccHHHHHHHHHHHHHHHh--------------------------------------cccHHHHHHHHHH
Confidence 88999999999999999888777766443 0111222333456
Q ss_pred hhcCCChhhHHHHHHHHHHhcccCchhhhhhccHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhcc
Q 000737 1228 AFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSINS 1297 (1322)
Q Consensus 1228 ylkS~~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~~ 1297 (1322)
++++..+.+|.--..|.+..+..+++.-...-....+.+.++. .-.|-|+.||..|.++++-++|....
T Consensus 379 ~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~-~~~D~~~~VR~Aa~e~~~~v~k~~Ge 447 (815)
T KOG1820|consen 379 ALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIK-HINDTDKDVRKAALEAVAAVMKVHGE 447 (815)
T ss_pred HhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhh-hccCCcHHHHHHHHHHHHHHHHHhhH
Confidence 7888888899887777777777666554455567889999988 89999999999999999998876543
No 92
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.56 E-value=0.71 Score=59.66 Aligned_cols=259 Identities=14% Similarity=0.082 Sum_probs=144.3
Q ss_pred HhhHHHHHHHHHHhhhhccCCCCCCCChHHHHHHHHHHHHHHhCcHHHHHHHHhcCCCCchhhHHHhHHHHHHHHhhhCC
Q 000737 898 KSYAPVLAALTLQLGSCHGLASSGQHEPLRAILTSFQAFCECVGDLEMRKILARDGEQNDKEKWINLIGDVAGCVSIKRP 977 (1322)
Q Consensus 898 ~~fp~Lf~aLL~ql~~~~~l~~~~~~~P~~~aleAlk~ll~~~g~~~~~~~Le~~~~w~~~~~~~~GV~lLar~l~~~~~ 977 (1322)
.||.+=|.||=.=|-|-.+.+.|.+.-| ..++.|.+..-|..--......---|-|. |.+ +
T Consensus 448 ~FFteQLTAFevWLd~gse~r~PPeQLP--iVLQVLLSQvHRlRAL~LL~RFLDlGpWA--------V~L---a------ 508 (1387)
T KOG1517|consen 448 PFFTEQLTAFEVWLDYGSESRTPPEQLP--IVLQVLLSQVHRLRALVLLARFLDLGPWA--------VDL---A------ 508 (1387)
T ss_pred chHHHHHHHHHHHHHhccccCCChHhcc--hHHHHHHHHHHHHHHHHHHHHHhccchhh--------hhh---h------
Confidence 5788888888666666666554433444 45544444333322111111111124452 222 1
Q ss_pred hhHHHHHHHHHhhhcccCccchHHHHHHHHHHhhc-CCchhchHHH-HHHHHHhhcCC---CChhHHhhhhhcccCCCc-
Q 000737 978 KEVQTICLILTKSINRQQRFQREAAAAALSEFVRY-SGGFDSLLEQ-MVEALCRHVSD---ESPTVRGLCLRGLVQIPS- 1051 (1322)
Q Consensus 978 ~~~~~il~~l~~~l~s~~~~~Ri~a~aflsEll~~-~~~~~~ll~~-~~~~L~~~l~D---~~~~VR~lalrGLg~l~~- 1051 (1322)
.-.+|+-++.+.|+|+-..-|.+-+=+-+..|.= +.....+++. .-....+-+.+ =++.=|.||..-|+.+..
T Consensus 509 -LsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~n 587 (1387)
T KOG1517|consen 509 -LSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRN 587 (1387)
T ss_pred -hccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcc
Confidence 1256777777777777766664433222333220 0000011111 00011111121 135667777777775543
Q ss_pred ---hhHhhhHhHHHHHHHhhcccC-ChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHH
Q 000737 1052 ---IHIHQYATQVLSVILALLDDL-DESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFG 1127 (1322)
Q Consensus 1052 ---~~v~~~~~~lL~all~~L~d~-d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG 1127 (1322)
.+-.-+...++..|++.|.|. +.-...=.+-+|+++-+.-+.....-.-.+-..++-..+.|+-++||+||+.++|
T Consensus 588 f~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALg 667 (1387)
T KOG1517|consen 588 FKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALG 667 (1387)
T ss_pred cchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 233345667888899888874 3445566777888887544433222222333455667889999999999999999
Q ss_pred HHhhccCC---cch-------------HhHHHHHHHhHHHHHHhccCCChhHHHHHHHHHHhhcc
Q 000737 1128 ALSNFGVG---SQR-------------EAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAP 1176 (1322)
Q Consensus 1128 ~L~~~~~~---~~~-------------~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~ 1176 (1322)
.+...+.. +.. ....+.+..++.+++--++|..|-||++-.-+|.+.+.
T Consensus 668 tfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~ 732 (1387)
T KOG1517|consen 668 TFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVV 732 (1387)
T ss_pred HHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 99984311 111 11223455667789999999999999998888877653
No 93
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=94.46 E-value=0.34 Score=63.02 Aligned_cols=198 Identities=17% Similarity=0.167 Sum_probs=142.1
Q ss_pred HHHHHHHHHhhhcccCccchHHHHHHHHHHhhcCC-c-hhchHHHHHHHHHhhcCCCChhHHhhhhhcccCCCc---hhH
Q 000737 980 VQTICLILTKSINRQQRFQREAAAAALSEFVRYSG-G-FDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS---IHI 1054 (1322)
Q Consensus 980 ~~~il~~l~~~l~s~~~~~Ri~a~aflsEll~~~~-~-~~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~---~~v 1054 (1322)
...+-..+..-+.|..-.+|.-|+.-+...+..+. . ......-+...+.-.++|.|-.|-..++.-|+-|+. ...
T Consensus 251 ~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~ 330 (815)
T KOG1820|consen 251 LSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLF 330 (815)
T ss_pred hhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhh
Confidence 34444455566667788888888888877777665 1 111112233345557799999999998888887764 557
Q ss_pred hhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccC
Q 000737 1055 HQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGV 1134 (1322)
Q Consensus 1055 ~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~ 1134 (1322)
..|...+.|++++.+.+.-..++-.+..++..+++.-. +. .+..-+--+..+-++.+|.--..+|+...+.-+
T Consensus 331 ~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~---l~----~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~ 403 (815)
T KOG1820|consen 331 RKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP---LS----KMSEAILEALKGKNPQIKGECLLLLDRKLRKLG 403 (815)
T ss_pred HHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc---HH----HHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcC
Confidence 88999999999999998877777777777777776322 22 333344457889999999999999999887322
Q ss_pred CcchHhHHHHHHHhHHHHHHhccCCChhHHHHHHHHHHhhcchhhh-hhhhhh
Q 000737 1135 GSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIF 1186 (1322)
Q Consensus 1135 ~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~~-~l~~lf 1186 (1322)
..-.+++-++....-++-|.+|-+.+||+|+..++..+-..+|- ....++
T Consensus 404 --~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L 454 (815)
T KOG1820|consen 404 --PKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLL 454 (815)
T ss_pred --CcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 14456666666666667799999999999999999888777776 444333
No 94
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=94.36 E-value=3.4 Score=47.20 Aligned_cols=220 Identities=18% Similarity=0.163 Sum_probs=148.6
Q ss_pred hHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhcccccc--CChh-------------HHHHHH
Q 000737 1059 TQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVS--MNVK-------------MRRNAF 1123 (1322)
Q Consensus 1059 ~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffed--e~~~-------------vR~aAi 1123 (1322)
||+.=+..+.|+...+..-.+|+.-|.++++.++-.+ +-..+.....+|--.+ .-+. --..++
T Consensus 6 pQlFW~~vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~--~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~t~e~tl 83 (262)
T PF14225_consen 6 PQLFWTAVACLESIHEHEFLEALSLLNKLLDKLDLDD--PDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSSTYELTL 83 (262)
T ss_pred hHHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhcCCch--HHHHHHHHHhCCccccCCCchhHHHHHhCccCCCCcHHHHH
Confidence 4555566677777778889999999999998876443 2222333344443322 2222 345678
Q ss_pred HHHHHHhhcc----CCcchHhHHHHHHHhHHHHHHhccCCCh----hHHHHHHHHHHhhcchhhh-hhhhhhccccCCCC
Q 000737 1124 AAFGALSNFG----VGSQREAFLEQIHAMLPRLILHIYDDDL----SVRQACRNTLKQVAPFMEI-GVYGIFNSHCFNSD 1194 (1322)
Q Consensus 1124 ~lfG~L~~~~----~~~~~~~~~eqv~~~LvpLLlHL~D~~~----~V~~ack~tL~~~a~~L~~-~l~~lf~~~~~~~~ 1194 (1322)
.++..+.... .|....-+.-.+..+++-++.|+.+++| .-...+..++...|.--+. .+..++... ..+
T Consensus 84 ~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~~~La~il~~y--a~~ 161 (262)
T PF14225_consen 84 RLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGLPNLARILSSY--AKG 161 (262)
T ss_pred HHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCCccHHHHHHHH--Hhc
Confidence 8888888731 1222235667899999999999999982 4555667888888866566 665555542 122
Q ss_pred CCCChHHHHHHHHHHHHHhC-cchHHHHHHHHHhhhcCCChhhHHHHHHHHHHhcccCchhhhhhccHHHHHHHHHHHhc
Q 000737 1195 HRSDYETFVRDLTRQFVQHF-PSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLS 1273 (1322)
Q Consensus 1195 ~~l~~~~f~~~~~k~L~~~~-~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll 1273 (1322)
+--+-++|++.+++++-+.| |+.-...+.=.+..+.+.-+-+|......+-.++++.+.+.- .+ .+++..+.. ++
T Consensus 162 ~fr~~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~-~dlispllr-lL 237 (262)
T PF14225_consen 162 RFRDKDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HG-ADLISPLLR-LL 237 (262)
T ss_pred CCCCHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cc-hHHHHHHHH-Hh
Confidence 22234889999999999998 776666666678888988899999999999999998775432 44 446677766 45
Q ss_pred cCCChHHHHHHHHHHHHHH
Q 000737 1274 QSADAIVRATCSSSLGWLL 1292 (1322)
Q Consensus 1274 ~Dpdp~VR~~Aa~aL~~l~ 1292 (1322)
+.+ .+.+||..+.
T Consensus 238 ~t~------~~~eAL~VLd 250 (262)
T PF14225_consen 238 QTD------LWMEALEVLD 250 (262)
T ss_pred CCc------cHHHHHHHHH
Confidence 433 4567777665
No 95
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.25 E-value=0.22 Score=57.31 Aligned_cols=139 Identities=17% Similarity=0.115 Sum_probs=86.3
Q ss_pred cCCCChhHHhhhhhcccCCCc-hhH-h-hhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhc-cCCcccchhhHHhHHHH
Q 000737 1031 VSDESPTVRGLCLRGLVQIPS-IHI-H-QYATQVLSVILALLDDLDESVQLTAVSCLLTILK-SSSKDAVEPILLNLSVR 1106 (1322)
Q Consensus 1031 l~D~~~~VR~lalrGLg~l~~-~~v-~-~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~-~l~~~~~~~~l~~l~~~ 1106 (1322)
.+..+-.||+-+.-+|.||.. .+- + .-+.--+|.+++.+...|.+|..-+..++++|.- ....+.+..-=+.+...
T Consensus 176 akskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~ 255 (550)
T KOG4224|consen 176 AKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPA 255 (550)
T ss_pred cccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHH
Confidence 344566888889888888875 111 1 1122237788888888899999999999988851 11111111222345566
Q ss_pred hccccccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHH-HhHHHHHHhccCCChhHHHHHHHHHHhh
Q 000737 1107 LRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIH-AMLPRLILHIYDDDLSVRQACRNTLKQV 1174 (1322)
Q Consensus 1107 lrpffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~-~~LvpLLlHL~D~~~~V~~ack~tL~~~ 1174 (1322)
+-.++++.+++++.-|--++|.++. . .+.-++-+- ++++.|+--++|+--...-+.-+..+.+
T Consensus 256 Lv~Lmd~~s~kvkcqA~lALrnlas--d---t~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrni 319 (550)
T KOG4224|consen 256 LVDLMDDGSDKVKCQAGLALRNLAS--D---TEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNI 319 (550)
T ss_pred HHHHHhCCChHHHHHHHHHHhhhcc--c---chhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhc
Confidence 6779999999999999999999987 1 122222233 3444444477777554444444444333
No 96
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.09 E-value=8.2 Score=49.22 Aligned_cols=164 Identities=22% Similarity=0.271 Sum_probs=113.0
Q ss_pred hhhHHHhHHHHHHHHhhhCChhHHHHHHHHHhhhcccCccchHHHHHHHHHHhhcCCchhchHHHHHHHHHhhcCCCChh
Q 000737 958 KEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPT 1037 (1322)
Q Consensus 958 ~~~~~~GV~lLar~l~~~~~~~~~~il~~l~~~l~s~~~~~Ri~a~aflsEll~~~~~~~~ll~~~~~~L~~~l~D~~~~ 1037 (1322)
++...+|+..+.+.|.. +..+..++.-+++.++..+-..+...-..+.-.-...++ .-.-.++.+..-..||||.
T Consensus 27 ~~kr~~a~kkvIa~Mt~--G~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~---~a~~avnt~~kD~~d~np~ 101 (734)
T KOG1061|consen 27 KEKRKDAVKKVIAYMTV--GKDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPD---LAILAVNTFLKDCEDPNPL 101 (734)
T ss_pred hhhHHHHHHHHHhcCcc--CcchHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCch---HHHhhhhhhhccCCCCCHH
Confidence 36667777776666653 356777777777777766655555444443333222222 2233678888899999999
Q ss_pred HHhhhhhcccCCCchhHhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCChh
Q 000737 1038 VRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVK 1117 (1322)
Q Consensus 1038 VR~lalrGLg~l~~~~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~ 1117 (1322)
+|.+|+|-+|.+..+++ ..++...|..++.|.+.-|+..|..+..++.+. +.+.+.. ..++..+..+..|+++.
T Consensus 102 iR~lAlrtm~~l~v~~i---~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~-~~~~~~~--~gl~~~L~~ll~D~~p~ 175 (734)
T KOG1061|consen 102 IRALALRTMGCLRVDKI---TEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDI-DPDLVED--SGLVDALKDLLSDSNPM 175 (734)
T ss_pred HHHHHhhceeeEeehHH---HHHHHHHHHHhccCCChhHHHHHHHHHHHhhcC-Chhhccc--cchhHHHHHHhcCCCch
Confidence 99999999999987665 445778889999998888888888888887643 2222111 12333445566699999
Q ss_pred HHHHHHHHHHHHhhc
Q 000737 1118 MRRNAFAAFGALSNF 1132 (1322)
Q Consensus 1118 vR~aAi~lfG~L~~~ 1132 (1322)
|=+.|..++..+...
T Consensus 176 VVAnAlaaL~eI~e~ 190 (734)
T KOG1061|consen 176 VVANALAALSEIHES 190 (734)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998873
No 97
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.02 E-value=25 Score=45.11 Aligned_cols=268 Identities=16% Similarity=0.150 Sum_probs=141.2
Q ss_pred HHHHHHHHHhhcCCchhchHHHHHHHHHhhcCCCChhHHhhhhhcccCCCchhHhhhHhHHHHHHHhhcccCChHHHHHH
Q 000737 1001 AAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTA 1080 (1322)
Q Consensus 1001 ~a~aflsEll~~~~~~~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~~~v~~~~~~lL~all~~L~d~d~~V~lea 1080 (1322)
.-+..-++++... .....++...+..|+.+-...|--=|.|++-++...-.+...+ .+.++--.+.....-.+-.|
T Consensus 227 ~lir~~~~~l~~~---~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p-avs~Lq~flssp~~~lRfaA 302 (865)
T KOG1078|consen 227 MLIRIASELLKEN---QQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP-AVSVLQLFLSSPKVALRFAA 302 (865)
T ss_pred HHHHHHHHHhhhc---ccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch-HHHHHHHHhcCcHHHHHHHH
Confidence 3344445555432 1122346677888888777777666667777666532333333 34444444444455577788
Q ss_pred HHHHHHHhccCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHHhccCCC
Q 000737 1081 VSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDD 1160 (1322)
Q Consensus 1081 m~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~ 1160 (1322)
+.+|.++-..-. ..+...= .-+-++..|.|-.+--.||..+ .+.|..+..+.+.+|+ ..++--+.|+.
T Consensus 303 vRtLnkvAm~~P-~~v~~cN----~elE~lItd~NrsIat~AITtL---LKTG~e~sv~rLm~qI----~~fv~disDeF 370 (865)
T KOG1078|consen 303 VRTLNKVAMKHP-QAVTVCN----LDLESLITDSNRSIATLAITTL---LKTGTESSVDRLMKQI----SSFVSDISDEF 370 (865)
T ss_pred HHHHHHHHHhCC-ccccccc----hhHHhhhcccccchhHHHHHHH---HHhcchhHHHHHHHHH----HHHHHhccccc
Confidence 888888764322 1111111 2245677777766666666544 4434455566666554 34444678888
Q ss_pred hhHHHHHHHHHHhhcchhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCC--------
Q 000737 1161 LSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAP-------- 1232 (1322)
Q Consensus 1161 ~~V~~ack~tL~~~a~~L~~~l~~lf~~~~~~~~~~l~~~~f~~~~~k~L~~~~~~~~~~~l~~~l~ylkS~-------- 1232 (1322)
.-|+-.+-.+|+..-|..+..+-..+.+-.-+ .+++.|-..+-+..--.++.+|+.=..-+...-.|+.|.
T Consensus 371 Kivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~-eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce~~~i~~r 449 (865)
T KOG1078|consen 371 KIVVVDAIRSLCLKFPRKHTVMMNFLSNMLRE-EGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCEFTQIAVR 449 (865)
T ss_pred eEEeHHHHHHHHhhccHHHHHHHHHHHHHHHh-ccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhccchHHHHH
Confidence 88888888888888876555332222222122 335555222222223333444443333333333333322
Q ss_pred -----------------------------ChhhHHHHHHHHHHhcccCchhhhhhccHHHHHHHHHHHhccCCChHHHHH
Q 000737 1233 -----------------------------WPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRAT 1283 (1322)
Q Consensus 1233 -----------------------------~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~ 1283 (1322)
...+|++|+..+..+.. ..+. -...+...|.. .+.|+|-.||.+
T Consensus 450 ILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~--~~~~----l~~sI~vllkR-c~~D~DdevRdr 522 (865)
T KOG1078|consen 450 ILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGA--QDVV----LLPSILVLLKR-CLNDSDDEVRDR 522 (865)
T ss_pred HHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhc--CCCC----ccccHHHHHHH-HhcCchHHHHHH
Confidence 23455555544444431 1111 12334444544 677888888888
Q ss_pred HHHHHHHHH
Q 000737 1284 CSSSLGWLL 1292 (1322)
Q Consensus 1284 Aa~aL~~l~ 1292 (1322)
|+-+|..+.
T Consensus 523 Atf~l~~l~ 531 (865)
T KOG1078|consen 523 ATFYLKNLE 531 (865)
T ss_pred HHHHHHHhh
Confidence 888888776
No 98
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=93.69 E-value=1.7 Score=52.07 Aligned_cols=200 Identities=15% Similarity=0.145 Sum_probs=126.4
Q ss_pred hHHHHHHHHHhhhcccCccchHHHHHHHHHHhhc--CCchhchHHHHHHHHHhhcCC-CChhHHhhhhhcccCCCchhH-
Q 000737 979 EVQTICLILTKSINRQQRFQREAAAAALSEFVRY--SGGFDSLLEQMVEALCRHVSD-ESPTVRGLCLRGLVQIPSIHI- 1054 (1322)
Q Consensus 979 ~~~~il~~l~~~l~s~~~~~Ri~a~aflsEll~~--~~~~~~ll~~~~~~L~~~l~D-~~~~VR~lalrGLg~l~~~~v- 1054 (1322)
+..-+.+.+..+=.+....+|.-|+.=+-+++.. ..+++.....++..+.+-+.| .++..|++|+|-|+.+...+.
T Consensus 284 ~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~ 363 (516)
T KOG2956|consen 284 QSALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA 363 (516)
T ss_pred hhHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH
Confidence 4444444444444444567778887755555542 234666666788888899999 899999999999998875333
Q ss_pred --hhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhc
Q 000737 1055 --HQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNF 1132 (1322)
Q Consensus 1055 --~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~ 1132 (1322)
.-+....+--+++.=.|.++.|+..|-....+++....+. .-+.+|+..|.. +++..=.+++...-.+..
T Consensus 364 ~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~---~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e- 435 (516)
T KOG2956|consen 364 RLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPL---QCIVNISPLILT----ADEPRAVAVIKMLTKLFE- 435 (516)
T ss_pred hhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCch---hHHHHHhhHHhc----CcchHHHHHHHHHHHHHh-
Confidence 3334444444555555566789999999888888765432 223344444444 555555566645555443
Q ss_pred cCCcchHhHHHHHHHhHHHHHHhccCCChhHHHHHHHHHHhhcchhhh-hhhhhhcc
Q 000737 1133 GVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNS 1188 (1322)
Q Consensus 1133 ~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~~-~l~~lf~~ 1188 (1322)
+-..+.+..+|-...+.++---.-....||++|-|.|-.+..-+|. .+.--+..
T Consensus 436 --~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~ 490 (516)
T KOG2956|consen 436 --RLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQ 490 (516)
T ss_pred --hcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhh
Confidence 2234455555545555555566666888999999999888887776 55444443
No 99
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=93.61 E-value=1.1 Score=51.35 Aligned_cols=199 Identities=15% Similarity=0.181 Sum_probs=118.6
Q ss_pred HHHHhhhcccCccchHHHHHHHHHHhhcCCc---hhchHHHHHHHHHhhcCCCChhHHhhhhhcccCCCc-hhH-hhhHh
Q 000737 985 LILTKSINRQQRFQREAAAAALSEFVRYSGG---FDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS-IHI-HQYAT 1059 (1322)
Q Consensus 985 ~~l~~~l~s~~~~~Ri~a~aflsEll~~~~~---~~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~-~~v-~~~~~ 1059 (1322)
..|.++|+|.++..|.-|+-++++.+..-+. .....+.++..+.+++.|. +.+... ++|+..+.. ... .....
T Consensus 2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~-~~~~~~-l~gl~~L~~~~~~~~~~~~ 79 (262)
T PF14500_consen 2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH-ACVQPA-LKGLLALVKMKNFSPESAV 79 (262)
T ss_pred cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH-hhHHHH-HHHHHHHHhCcCCChhhHH
Confidence 4578999999999999999999999987432 3445566889999999655 445554 777766543 110 11234
Q ss_pred HHHHHHHhhcccC--ChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCC-hhHHHHHHHHHHHHhhccCCc
Q 000737 1060 QVLSVILALLDDL--DESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMN-VKMRRNAFAAFGALSNFGVGS 1136 (1322)
Q Consensus 1060 ~lL~all~~L~d~--d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~-~~vR~aAi~lfG~L~~~~~~~ 1136 (1322)
.++.++.+..+-. -...+......|..+++.-. ..+..+-......+....+.|+ +.-=.-+|.++-.+.+.-.
T Consensus 80 ~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~-~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~-- 156 (262)
T PF14500_consen 80 KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHR-EALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD-- 156 (262)
T ss_pred HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhH-HHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--
Confidence 4566665543322 24578888888888876521 1112122223333444666666 4445567777777766221
Q ss_pred chHhHHHHHHHhH---HHHHHhccCCCh------hHHHHHHHHHHhhcchhhhhhhhhhccc
Q 000737 1137 QREAFLEQIHAML---PRLILHIYDDDL------SVRQACRNTLKQVAPFMEIGVYGIFNSH 1189 (1322)
Q Consensus 1137 ~~~~~~eqv~~~L---vpLLlHL~D~~~------~V~~ack~tL~~~a~~L~~~l~~lf~~~ 1189 (1322)
...+.|+++..+ .|.-++=.-.+| +.+.+.+.+|.....|-.+-+..+++|.
T Consensus 157 -~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL 217 (262)
T PF14500_consen 157 -ISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKL 217 (262)
T ss_pred -cchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHH
Confidence 256677766555 555565443343 5666666666543333334556666664
No 100
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=93.52 E-value=36 Score=45.27 Aligned_cols=70 Identities=14% Similarity=0.067 Sum_probs=51.1
Q ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHHHhhccCccccccHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHhh
Q 000737 742 ATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAEN 815 (1322)
Q Consensus 742 ~li~~ll~~L~d~~~~~~~~A~~~L~~~l~~~g~~L~e~~V~eI~~~i~~~L~~i~~~~~r~~~l~aI~lLa~~ 815 (1322)
-++..++++|.|.+...+..||.-+.-+-..-..+| +.+.++.+.....-...+.+..+..-|+.-||..
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~L----ad~vi~svid~~~p~e~~~aWHgacLaLAELA~r 410 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPEL----ADQVIGSVIDLFNPAEDDSAWHGACLALAELALR 410 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHH----HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhc
Confidence 457789999999999999999988877776656666 3444666666455555677777777777777764
No 101
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.34 E-value=7.1 Score=49.69 Aligned_cols=169 Identities=14% Similarity=0.192 Sum_probs=116.1
Q ss_pred HHHhhhcccCccchHHHHHHHHHHhhcCCchhchHHHHHHHHHhhcCCCChhHHhhhhhcccCCCch--hHhhhHhHHHH
Q 000737 986 ILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI--HIHQYATQVLS 1063 (1322)
Q Consensus 986 ~l~~~l~s~~~~~Ri~a~aflsEll~~~~~~~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~~--~v~~~~~~lL~ 1063 (1322)
.+.+.|+|..+.-..=|+-++..++-+-.+...+ .+...+.....|+.||++.--=|-+-|++ +...+ =++
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~G~dvS~~----Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL---SIn 111 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAKGKDVSLL----FPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL---SIN 111 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhcCCcHHHH----HHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee---eHH
Confidence 4556777888888888888887777654442222 33344445677889999876555555541 11111 145
Q ss_pred HHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccCCcchHhHHH
Q 000737 1064 VILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLE 1143 (1322)
Q Consensus 1064 all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~e 1143 (1322)
.+=.+|.|++..++.-|+++|+.|= +..+-+=+...++..-.|..+-||..|..+.-.|=.. +...+.
T Consensus 112 tfQk~L~DpN~LiRasALRvlSsIR-------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsL--d~e~k~--- 179 (968)
T KOG1060|consen 112 TFQKALKDPNQLIRASALRVLSSIR-------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSL--DPEQKD--- 179 (968)
T ss_pred HHHhhhcCCcHHHHHHHHHHHHhcc-------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcC--ChhhHH---
Confidence 5667899999999999999998763 3334444556778899999999999999998887653 223222
Q ss_pred HHHHhHHHHHHhccCCChhHHHHHHHHHHhhcc
Q 000737 1144 QIHAMLPRLILHIYDDDLSVRQACRNTLKQVAP 1176 (1322)
Q Consensus 1144 qv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~ 1176 (1322)
|+...+-- -|.|..|-|+.++..||..|+|
T Consensus 180 qL~e~I~~---LLaD~splVvgsAv~AF~evCP 209 (968)
T KOG1060|consen 180 QLEEVIKK---LLADRSPLVVGSAVMAFEEVCP 209 (968)
T ss_pred HHHHHHHH---HhcCCCCcchhHHHHHHHHhch
Confidence 33333222 2579999999999999999886
No 102
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=93.08 E-value=0.028 Score=42.12 Aligned_cols=28 Identities=29% Similarity=0.363 Sum_probs=20.1
Q ss_pred HHHHHHhhcCCCChhHHhhhhhcccCCC
Q 000737 1023 MVEALCRHVSDESPTVRGLCLRGLVQIP 1050 (1322)
Q Consensus 1023 ~~~~L~~~l~D~~~~VR~lalrGLg~l~ 1050 (1322)
+++.+.+.++||++.||..|+++||+++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 3567777788888888888888877664
No 103
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=92.98 E-value=2 Score=48.87 Aligned_cols=147 Identities=15% Similarity=0.178 Sum_probs=89.4
Q ss_pred HHHHHHhhhcccCccchHHHHHHHHHHhhcCCchhchHHHHHHHHHhhc-CCC-ChhHHhhhhhcccCCCc-hhHhhhHh
Q 000737 983 ICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHV-SDE-SPTVRGLCLRGLVQIPS-IHIHQYAT 1059 (1322)
Q Consensus 983 il~~l~~~l~s~~~~~Ri~a~aflsEll~~~~~~~~ll~~~~~~L~~~l-~D~-~~~VR~lalrGLg~l~~-~~v~~~~~ 1059 (1322)
.+..+...++++++.-|.-|+-.+.-+- ........++.-++.+++.. .++ |..+...++|.|+|++- ++.+....
T Consensus 55 gi~lI~~lL~~p~~~vr~~AL~aL~Nls-~~~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~ 133 (254)
T PF04826_consen 55 GISLIGSLLNDPNPSVREKALNALNNLS-VNDENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA 133 (254)
T ss_pred CHHHHHHHcCCCChHHHHHHHHHHHhcC-CChhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH
Confidence 4455667777788777766665555431 12223344455555555544 333 78899999999999975 32222233
Q ss_pred HHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhcccccc-CChhHHHHHHHHHHHHhh
Q 000737 1060 QVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVS-MNVKMRRNAFAAFGALSN 1131 (1322)
Q Consensus 1060 ~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffed-e~~~vR~aAi~lfG~L~~ 1131 (1322)
..++.++..|...+..+...++..|.++-..-+-. -.-+.-+....+-.+|+. ++.++-.-++.+|+.+.+
T Consensus 134 ~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~-~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 134 NYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMT-RELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINE 205 (254)
T ss_pred hhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHH-HHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 34666777777668888888888888775322100 000111111222346666 578899999999999976
No 104
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=92.88 E-value=2.4 Score=51.98 Aligned_cols=167 Identities=17% Similarity=0.182 Sum_probs=116.9
Q ss_pred hHHHHHHHHHhhh-cccCccchHHHHHHHHH-----HhhcCCchhchHHHHHHHHHhhcCCCChhHHhhhhhcccCCCch
Q 000737 979 EVQTICLILTKSI-NRQQRFQREAAAAALSE-----FVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI 1052 (1322)
Q Consensus 979 ~~~~il~~l~~~l-~s~~~~~Ri~a~aflsE-----ll~~~~~~~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~~ 1052 (1322)
.+..++..+.... .+..+..|..++-.++= ++++.+.. ..+++.|.+.+.| +.+...+.+|++-+..+
T Consensus 226 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~----~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d 299 (415)
T PF12460_consen 226 DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA----TELLDKLLELLSS--PELGQQAAKAFGILLSD 299 (415)
T ss_pred hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH----HHHHHHHHHHhCC--hhhHHHHHHHHhhHhcC
Confidence 3445555555444 44555555555444422 23332222 3345566667776 77888888999866431
Q ss_pred --h--------------HhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCCh
Q 000737 1053 --H--------------IHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNV 1116 (1322)
Q Consensus 1053 --~--------------v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~ 1116 (1322)
+ -.++...++|.++++..+.++.+...-+.+|+.++.+++..-+.+.+.+|..-+-.-++-++.
T Consensus 300 ~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~ 379 (415)
T PF12460_consen 300 SDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDA 379 (415)
T ss_pred cHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 1 146678899999999999887788888999999999999888888888888888777888999
Q ss_pred hHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHHhc
Q 000737 1117 KMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHI 1156 (1322)
Q Consensus 1117 ~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL 1156 (1322)
++|.++...+-.+.. +..+.+.+++ +++||-++-+
T Consensus 380 ~v~~s~L~tL~~~l~----~~~~~i~~hl-~sLI~~LL~l 414 (415)
T PF12460_consen 380 DVLLSSLETLKMILE----EAPELISEHL-SSLIPRLLKL 414 (415)
T ss_pred HHHHHHHHHHHHHHH----cCHHHHHHHH-HHHHHHHHhc
Confidence 999999999999987 2244455544 4777766643
No 105
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=92.68 E-value=31 Score=42.26 Aligned_cols=290 Identities=14% Similarity=0.103 Sum_probs=152.6
Q ss_pred HHHhhhcccCccchHHHHHHHHHHhhcCCc--hhchHHHHHHHHHhhcCCC-ChhHHhhhhhcccCCCc-hhHhh-h-Hh
Q 000737 986 ILTKSINRQQRFQREAAAAALSEFVRYSGG--FDSLLEQMVEALCRHVSDE-SPTVRGLCLRGLVQIPS-IHIHQ-Y-AT 1059 (1322)
Q Consensus 986 ~l~~~l~s~~~~~Ri~a~aflsEll~~~~~--~~~ll~~~~~~L~~~l~D~-~~~VR~lalrGLg~l~~-~~v~~-~-~~ 1059 (1322)
.+.+++++++..--..|.-+++-++..... ....++.+.+.|...++.+ +...+..+++.|+.+.. +..+. + ..
T Consensus 105 ~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~ 184 (429)
T cd00256 105 PFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLA 184 (429)
T ss_pred HHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHc
Confidence 334455666555556666666777654222 1123333455555555543 35556667788877754 22221 0 11
Q ss_pred HHHHHHHhhcccC--ChHHHHHHHHHHHHH------hccCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhh
Q 000737 1060 QVLSVILALLDDL--DESVQLTAVSCLLTI------LKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN 1131 (1322)
Q Consensus 1060 ~lL~all~~L~d~--d~~V~leam~~L~~l------l~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~ 1131 (1322)
..++.+.+.|... +-+...+++.++=-+ .+.+...++-+.+.+|+. +...++|=..++..|-.+..
T Consensus 185 ~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k------~s~KEKvvRv~l~~l~Nll~ 258 (429)
T cd00256 185 DGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILK------ESTKEKVIRIVLAIFRNLIS 258 (429)
T ss_pred cCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHH------hhhhHHHHHHHHHHHHHHhh
Confidence 1344455544432 123444444333222 122222233333333322 22356676777777888876
Q ss_pred ccCCc-chHhHHHHHHH-hHHHHHHhccCC---ChhHHH---HHHHHHHhhcc-hhhh-hh-hhhhcccc-CCCCCCCC-
Q 000737 1132 FGVGS-QREAFLEQIHA-MLPRLILHIYDD---DLSVRQ---ACRNTLKQVAP-FMEI-GV-YGIFNSHC-FNSDHRSD- 1198 (1322)
Q Consensus 1132 ~~~~~-~~~~~~eqv~~-~LvpLLlHL~D~---~~~V~~---ack~tL~~~a~-~L~~-~l-~~lf~~~~-~~~~~~l~- 1198 (1322)
..... ....+...+.. .+++++-.|+.. |+++.. .-...|...-. +-.| +. .++...+. |.. .|
T Consensus 259 ~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp---~H~ 335 (429)
T cd00256 259 KRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSP---VHK 335 (429)
T ss_pred cccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCC---CCC
Confidence 32211 12233344333 556655444432 333332 33334433322 2234 33 45554442 433 34
Q ss_pred hHHHHHHHHHHHHHhCcchHHHHHHHHHhhh-cCCChhhHHHHHHHHHHhcccCc--hhhhhhccHHHHHHHHHHHhccC
Q 000737 1199 YETFVRDLTRQFVQHFPSRIDSYMGSTIQAF-EAPWPIIQANAIYFSSSILCLCD--DQHILSLFYTQVFGLLVVKLSQS 1275 (1322)
Q Consensus 1199 ~~~f~~~~~k~L~~~~~~~~~~~l~~~l~yl-kS~~~~IR~aA~~fiG~l~~~l~--~~~~~~~~~e~l~~~L~~~Ll~D 1275 (1322)
-+.|+++=...+-++. ...+...+.++ +|..+.+=+-|+.=||.+++++| ...+.+++.. ..... |..+
T Consensus 336 se~FW~EN~~kf~~~~----~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K---~~vM~-Lm~h 407 (429)
T cd00256 336 SEKFWRENADRLNEKN----YELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGK---QRVMR-LLNH 407 (429)
T ss_pred CchHHHHHHHHHHhcc----hHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcH---HHHHH-HhcC
Confidence 3678887777776554 34455666666 46677778888888999999987 3443444432 33445 7789
Q ss_pred CChHHHHHHHHHHHHHH
Q 000737 1276 ADAIVRATCSSSLGWLL 1292 (1322)
Q Consensus 1276 pdp~VR~~Aa~aL~~l~ 1292 (1322)
|||.||.-|-.|.+.|.
T Consensus 408 ~d~~Vr~eAL~avQklm 424 (429)
T cd00256 408 EDPNVRYEALLAVQKLM 424 (429)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999988764
No 106
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.44 E-value=16 Score=46.54 Aligned_cols=108 Identities=12% Similarity=0.172 Sum_probs=72.2
Q ss_pred HHHhH-HHHHHhccCCChhHHHHHHHHHHhhcchhhh-hh-----hhhhccccCCCCCCCChHHHHHHHHHHHHHhCcch
Q 000737 1145 IHAML-PRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GV-----YGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSR 1217 (1322)
Q Consensus 1145 v~~~L-vpLLlHL~D~~~~V~~ack~tL~~~a~~L~~-~l-----~~lf~~~~~~~~~~l~~~~f~~~~~k~L~~~~~~~ 1217 (1322)
|++.+ ...|--|.-++.+||++|-+--..++..=+. .+ +++-.++.-+.+++-.|+.-+-.......-+||+.
T Consensus 314 il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~ 393 (948)
T KOG1058|consen 314 ILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEV 393 (948)
T ss_pred HHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHH
Confidence 44444 3444467788999999887655444432222 22 22222332222234567777777777778899999
Q ss_pred HHHHHHHHHhhhcCCChhhHHHHHHHHHHhcccCc
Q 000737 1218 IDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCD 1252 (1322)
Q Consensus 1218 ~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~ 1252 (1322)
....+.-++.|+.|.++.--.....|+-..+..+|
T Consensus 394 aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p 428 (948)
T KOG1058|consen 394 AATVVSLLLDFISDSNEAAASDVLMFVREAIEKFP 428 (948)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCc
Confidence 99999999999999999777777778877776554
No 107
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=92.43 E-value=14 Score=46.11 Aligned_cols=294 Identities=14% Similarity=0.159 Sum_probs=147.4
Q ss_pred HhHHHHHHHHhhhCChhHHHHHHHHHhhhcccC-ccchHHHHHHHHHHhhcCCc-hhchHHHHHHHHHhhcCCCChhHHh
Q 000737 963 NLIGDVAGCVSIKRPKEVQTICLILTKSINRQQ-RFQREAAAAALSEFVRYSGG-FDSLLEQMVEALCRHVSDESPTVRG 1040 (1322)
Q Consensus 963 ~GV~lLar~l~~~~~~~~~~il~~l~~~l~s~~-~~~Ri~a~aflsEll~~~~~-~~~ll~~~~~~L~~~l~D~~~~VR~ 1040 (1322)
..+..|++++..+....+..|.+...-.+.... ..-|.+|.-++.+++.++.. ...........+.+.-.|++---|.
T Consensus 9 ~a~~~l~~~i~~~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~~d~~~~l 88 (464)
T PF11864_consen 9 KAAEELCESIQKYPLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSNDDDFDLRL 88 (464)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCchhHHHHH
Confidence 344555666655555566777766666665543 33578888888888887655 2222233455555554555555666
Q ss_pred hhhhcccCCCchhHhhhHhHHHHHHHhhccc---------------------------CChHHHHHHHHHHHHHh----c
Q 000737 1041 LCLRGLVQIPSIHIHQYATQVLSVILALLDD---------------------------LDESVQLTAVSCLLTIL----K 1089 (1322)
Q Consensus 1041 lalrGLg~l~~~~v~~~~~~lL~all~~L~d---------------------------~d~~V~leam~~L~~ll----~ 1089 (1322)
-+++.|.+=+. ++.-+...+.+-+...|.+ .++......+.-+.+++ .
T Consensus 89 ~aL~~LT~~Gr-di~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~ 167 (464)
T PF11864_consen 89 EALIALTDNGR-DIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFN 167 (464)
T ss_pred HHHHHHHcCCc-CchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCC
Confidence 67777765442 1111122222222222211 12233444444455554 3
Q ss_pred cCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHHhccCCChhHHHHHHH
Q 000737 1090 SSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRN 1169 (1322)
Q Consensus 1090 ~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~ 1169 (1322)
.+++..++.++-+++.-.+. ....+++ .+++.+|.++..++.=+ ..-..++...|-.. |=.. +..+.
T Consensus 168 ~l~e~~i~~lv~~i~~iC~~--Ts~~~di-~~~L~vldaii~y~~iP--~~sl~~~i~vLCsi--~~~~---~l~~~--- 234 (464)
T PF11864_consen 168 YLDEDEISSLVDQICTICKS--TSSEDDI-EACLSVLDAIITYGDIP--SESLSPCIEVLCSI--VNSV---SLCKP--- 234 (464)
T ss_pred CCCHHHHHHHHHHHHHHHhc--cCcHHHH-HHHHHHHHHHHHcCcCC--hHHHHHHHHHHhhH--hccc---ccchh---
Confidence 45555555555554443222 2222334 67788888888765322 11122222222221 1000 11111
Q ss_pred HHHhhcchhhh-hhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhhHHHHHHHHHHhc
Q 000737 1170 TLKQVAPFMEI-GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSIL 1248 (1322)
Q Consensus 1170 tL~~~a~~L~~-~l~~lf~~~~~~~~~~l~~~~f~~~~~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~ 1248 (1322)
-| -+..++..|. | ...++.+|..|.+..+.. .+...+-+.|+.|+|.++
T Consensus 235 ---------~w~~m~nL~~S~~---g-----~~~i~~L~~iL~~~~~~~-------------~~~~~~lRGAv~~l~~ll 284 (464)
T PF11864_consen 235 ---------SWRTMRNLLKSHL---G-----HSAIRTLCDILRSPDPQN-------------KRDINVLRGAVFFLRMLL 284 (464)
T ss_pred ---------HHHHHHHHHcCcc---H-----HHHHHHHHHHHcccCccc-------------cccHHHHhhHHHHHHHHH
Confidence 23 3344444442 1 235667777774333322 223344446999999998
Q ss_pred ccCchhhhhhccHHH--HHHHHHHHhccCCChHHHHHHHHHHH-----HHHHHhcccccc
Q 000737 1249 CLCDDQHILSLFYTQ--VFGLLVVKLSQSADAIVRATCSSSLG-----WLLKSINSHSWR 1301 (1322)
Q Consensus 1249 ~~l~~~~~~~~~~e~--l~~~L~~~Ll~Dpdp~VR~~Aa~aL~-----~l~k~~~~~~~~ 1301 (1322)
.....+....+.... ++++|...|. -+++.|-.-..+.+. .+++......|.
T Consensus 285 ~~~~~~~~~~l~~~~~~vl~sl~~al~-~~~~~v~~eIl~~i~~ll~~~~~~~l~~~~W~ 343 (464)
T PF11864_consen 285 WGSGEQGYPSLPFSPSSVLPSLLNALK-SNSPRVDYEILLLINRLLDGKYGRELSEEDWD 343 (464)
T ss_pred hccccCCcceecccHHHHHHHHHHHHh-CCCCeehHHHHHHHHHHHhHhhhhhhcccCch
Confidence 776666665555455 8899888544 455555444444433 333444455665
No 108
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=91.95 E-value=0.65 Score=44.32 Aligned_cols=69 Identities=12% Similarity=0.199 Sum_probs=57.8
Q ss_pred HHHHHhhhcCCChhhHHHHHHHHHHhcccCchhhhhhccHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHH
Q 000737 1222 MGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKS 1294 (1322)
Q Consensus 1222 l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~ 1294 (1322)
+.+++.++.||.++||+.|...+..++..-+ ....+.+.+...+.. .++|+||.|=-.|.++|.-|...
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~-~L~d~DsyVYL~aI~~L~~La~~ 73 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLS-QLKDEDSYVYLNAIKGLAALADR 73 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHH-HcCCCCchHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999987654 223456788888888 89999999999999999888744
No 109
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.68 E-value=5 Score=50.28 Aligned_cols=142 Identities=23% Similarity=0.226 Sum_probs=101.2
Q ss_pred HHhhhcccCccchHHHHHHHHHHhh--cCCch----hchHHHHHHHHHhhcCCCChhHHhhhhhcccCCCc---hhH-hh
Q 000737 987 LTKSINRQQRFQREAAAAALSEFVR--YSGGF----DSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS---IHI-HQ 1056 (1322)
Q Consensus 987 l~~~l~s~~~~~Ri~a~aflsEll~--~~~~~----~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~---~~v-~~ 1056 (1322)
++..|+-++..-|.-|+-.|.++-. .|... ...++.=...|...|.||.|.||.-|+.|+..+-. +=+ ..
T Consensus 179 l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~ 258 (1005)
T KOG1949|consen 179 LWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPT 258 (1005)
T ss_pred HHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHH
Confidence 4567888888899999988888754 33331 23444445567788999999999999999986643 100 00
Q ss_pred hHhHHHHHHHhhcc-cCChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhh
Q 000737 1057 YATQVLSVILALLD-DLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN 1131 (1322)
Q Consensus 1057 ~~~~lL~all~~L~-d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~ 1131 (1322)
-...+|.-+.+-+- |...+|++....+|..++.. ....+.+-.+..++++.+-|....||.|+..++-.+-+
T Consensus 259 i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n---p~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 259 ILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN---PLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred HHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC---ccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 01123333333322 23467999999999999964 34567788888899999999999999999999887755
No 110
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.68 E-value=1.5 Score=56.76 Aligned_cols=196 Identities=14% Similarity=0.105 Sum_probs=117.2
Q ss_pred hHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccCCcch
Q 000737 1059 TQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQR 1138 (1322)
Q Consensus 1059 ~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~ 1138 (1322)
|.||-.+|+.- =++.|+.-|++.|+.=.|..--++.+-|-.-...++...-.++|-.-+.....+.+.-..-..
T Consensus 475 PiVLQVLLSQv------HRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~ 548 (1387)
T KOG1517|consen 475 PIVLQVLLSQV------HRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQA 548 (1387)
T ss_pred chHHHHHHHHH------HHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHH
Confidence 44555554432 467888889998874333211133333333334567788889999999999999985433233
Q ss_pred HhHHHHHHHhHHHHHHhccCCChhHHHHHHHHHHhhcchhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchH
Q 000737 1139 EAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRI 1218 (1322)
Q Consensus 1139 ~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~~~l~~lf~~~~~~~~~~l~~~~f~~~~~k~L~~~~~~~~ 1218 (1322)
+-++|-.+...+..+---+--+++-|..|.+.|..+..-..---++.++.
T Consensus 549 dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~------------------------------ 598 (1387)
T KOG1517|consen 549 DLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNG------------------------------ 598 (1387)
T ss_pred HHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccc------------------------------
Confidence 44444333333322211122245677777777766543211100111111
Q ss_pred HHHHHHHHhhhcCC-ChhhHHHHHHHHHHhcccCchhhhhhccHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHH
Q 000737 1219 DSYMGSTIQAFEAP-WPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLK 1293 (1322)
Q Consensus 1219 ~~~l~~~l~ylkS~-~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k 1293 (1322)
.++.-|+..+.++ .+=+|++.++-+|.+-++++...+.-.. .-...-|.. +++||-|.||++|.-|||-|..
T Consensus 599 -~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r-~~AhekL~~-~LsD~vpEVRaAAVFALgtfl~ 671 (1387)
T KOG1517|consen 599 -NLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRR-DNAHEKLIL-LLSDPVPEVRAAAVFALGTFLS 671 (1387)
T ss_pred -cHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhcccc-ccHHHHHHH-HhcCccHHHHHHHHHHHHHHhc
Confidence 1344566677774 6789999999999999887755442111 113344666 8999999999999999998875
No 111
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=91.27 E-value=2.2 Score=54.56 Aligned_cols=176 Identities=15% Similarity=0.109 Sum_probs=104.0
Q ss_pred HHHHHHhhhcccCccchHHHHHHH--HHHhhcCCchhchHHHHHHHHHhhcCCCChhHHhhhhhcccCCCc------hh-
Q 000737 983 ICLILTKSINRQQRFQREAAAAAL--SEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS------IH- 1053 (1322)
Q Consensus 983 il~~l~~~l~s~~~~~Ri~a~afl--sEll~~~~~~~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~------~~- 1053 (1322)
-+.++...+.+..-....++.+++ ...+..|.. ..++.+...+.....-+++.+|..|+-++|++.. +.
T Consensus 358 a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~--~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~ 435 (574)
T smart00638 358 ALKFIKQWIKNKKITPLEAAQLLAVLPHTARYPTE--EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSC 435 (574)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCCH--HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 334444444454444333333322 233333322 3334444444333334588899999999998863 11
Q ss_pred ----HhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccc-c--CChhHHHHHHHHH
Q 000737 1054 ----IHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQV-S--MNVKMRRNAFAAF 1126 (1322)
Q Consensus 1054 ----v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffe-d--e~~~vR~aAi~lf 1126 (1322)
+..+.+.+..-+-.+.++.|++.+.-.+.+|+++.... ....+.|+.. + -...+|.+|+.+|
T Consensus 436 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Al 504 (574)
T smart00638 436 PDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPS-----------SIKVLEPYLEGAEPLSTFIRLAAILAL 504 (574)
T ss_pred ChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 23444555555555555567777888889988877532 1222334444 3 3467999999999
Q ss_pred HHHhhccCCcchHhHHHHHHHhHHHHHHhccCCChhHHHHHHHHHHhhcchhhh
Q 000737 1127 GALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI 1180 (1322)
Q Consensus 1127 G~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~~ 1180 (1322)
..++.... +.+...+.|+. +-.+++++||.+|-..|.+|-|-..+
T Consensus 505 r~~a~~~p--------~~v~~~l~~i~-~n~~e~~EvRiaA~~~lm~t~P~~~~ 549 (574)
T smart00638 505 RNLAKRDP--------RKVQEVLLPIY-LNRAEPPEVRMAAVLVLMETKPSVAL 549 (574)
T ss_pred HHHHHhCc--------hHHHHHHHHHH-cCCCCChHHHHHHHHHHHhcCCCHHH
Confidence 98875222 24445566655 45678899999999999999665544
No 112
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=90.85 E-value=65 Score=42.22 Aligned_cols=53 Identities=11% Similarity=0.154 Sum_probs=44.5
Q ss_pred HHHHHHHHHhhccCccccccHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHhh
Q 000737 762 AIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAEN 815 (1322)
Q Consensus 762 A~~~L~~~l~~~g~~L~e~~V~eI~~~i~~~L~~i~~~~~r~~~l~aI~lLa~~ 815 (1322)
.+.++.+++...|.++.+. +..|++++..+|+......+-+.++.+..-|...
T Consensus 729 VG~lV~tLit~a~~el~~n-~d~IL~Avisrmq~ae~lsviQsLi~VfahL~~t 781 (1005)
T KOG2274|consen 729 VGPLVLTLITHASSELGPN-LDQILRAVISRLQQAETLSVIQSLIMVFAHLVHT 781 (1005)
T ss_pred HhHHHHHHHHHHHHHhchh-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhC
Confidence 3558888999999999666 9999999999999999888888887777776654
No 113
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.82 E-value=2.7 Score=55.45 Aligned_cols=184 Identities=18% Similarity=0.193 Sum_probs=117.8
Q ss_pred hhhHHHhHHHHHHHHhhhCC-hhHHHHHHHHHhhhcccC----ccchHHHHHHHHHHhhcCCchhchHHHHHHHHHhhc-
Q 000737 958 KEKWINLIGDVAGCVSIKRP-KEVQTICLILTKSINRQQ----RFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHV- 1031 (1322)
Q Consensus 958 ~~~~~~GV~lLar~l~~~~~-~~~~~il~~l~~~l~s~~----~~~Ri~a~aflsEll~~~~~~~~ll~~~~~~L~~~l- 1031 (1322)
.++..+.+.-++--..-+.+ ..+.+....+....+++. +.-+.+|+..++.|+.=. ...-+.-++.|...+
T Consensus 894 eDd~~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iS---a~fces~l~llftime 970 (1251)
T KOG0414|consen 894 EDDLADLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCIS---AEFCESHLPLLFTIME 970 (1251)
T ss_pred chhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHh
Confidence 44555555443332222231 133333334444443333 445688889998887522 122233344455545
Q ss_pred CCCChhHHhhhhhcccCCCc---hhHhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhc
Q 000737 1032 SDESPTVRGLCLRGLVQIPS---IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLR 1108 (1322)
Q Consensus 1032 ~D~~~~VR~lalrGLg~l~~---~~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lr 1108 (1322)
+.|+|.||.=+.-|+|.++- .=+.. -=+-++..|.|.+..|+..|+..|+.++-. +--.+.-++-.+|.
T Consensus 971 ksp~p~IRsN~VvalgDlav~fpnlie~----~T~~Ly~rL~D~~~~vRkta~lvlshLILn-dmiKVKGql~eMA~--- 1042 (1251)
T KOG0414|consen 971 KSPSPRIRSNLVVALGDLAVRFPNLIEP----WTEHLYRRLRDESPSVRKTALLVLSHLILN-DMIKVKGQLSEMAL--- 1042 (1251)
T ss_pred cCCCceeeecchheccchhhhcccccch----hhHHHHHHhcCccHHHHHHHHHHHHHHHHh-hhhHhcccHHHHHH---
Confidence 48999999999999999874 21222 234578889999999999999999998732 12233444445554
Q ss_pred cccccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHHhccCCChh
Q 000737 1109 NLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLS 1162 (1322)
Q Consensus 1109 pffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~ 1162 (1322)
+++|++.+||..|=.-|-.|++.+ +-|.+.|+-.+-||.|.+.+
T Consensus 1043 -cl~D~~~~IsdlAk~FF~Els~k~---------n~iynlLPdil~~Ls~~~l~ 1086 (1251)
T KOG0414|consen 1043 -CLEDPNAEISDLAKSFFKELSSKG---------NTIYNLLPDILSRLSNGNLE 1086 (1251)
T ss_pred -HhcCCcHHHHHHHHHHHHHhhhcc---------cchhhhchHHHHhhccCccc
Confidence 789999999999999999998722 23667777777899888543
No 114
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=90.38 E-value=2.9 Score=53.96 Aligned_cols=149 Identities=17% Similarity=0.161 Sum_probs=94.4
Q ss_pred chHHHHHHHHHhhcCCCChhHHhhhhhcccCCCc----h-------------hHhhhHhHHHHHHHhhcccCChHHHHHH
Q 000737 1018 SLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS----I-------------HIHQYATQVLSVILALLDDLDESVQLTA 1080 (1322)
Q Consensus 1018 ~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~----~-------------~v~~~~~~lL~all~~L~d~d~~V~lea 1080 (1322)
.+++.+...+.......++.+|..|+-++|.+.. . -.+++.+.+...+-.+....|+..++-+
T Consensus 431 e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 510 (618)
T PF01347_consen 431 ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVY 510 (618)
T ss_dssp HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHH
Confidence 3444444343333334678899999999987643 1 1245666666666666666778899999
Q ss_pred HHHHHHHhccCCcccchhhHHhHHHHhccccccC---ChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHHhcc
Q 000737 1081 VSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSM---NVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIY 1157 (1322)
Q Consensus 1081 m~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede---~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~ 1157 (1322)
+.||+++... .++..+.|+..++ ...+|.+|+.+|..++.. .-+.+...+.|+... .
T Consensus 511 LkaLgN~g~~-----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~--------~~~~v~~~l~~I~~n-~ 570 (618)
T PF01347_consen 511 LKALGNLGHP-----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH--------CPEKVREILLPIFMN-T 570 (618)
T ss_dssp HHHHHHHT-G-----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT---------HHHHHHHHHHHHH--T
T ss_pred HHHhhccCCc-----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhc--------CcHHHHHHHHHHhcC-C
Confidence 9999998742 2334456677766 788999999999987542 235666777776554 5
Q ss_pred CCChhHHHHHHHHHHhhcchhhh--hhhhhh
Q 000737 1158 DDDLSVRQACRNTLKQVAPFMEI--GVYGIF 1186 (1322)
Q Consensus 1158 D~~~~V~~ack~tL~~~a~~L~~--~l~~lf 1186 (1322)
.++++||-||-..|.+|-|-..+ .+....
T Consensus 571 ~e~~EvRiaA~~~lm~~~P~~~~l~~i~~~l 601 (618)
T PF01347_consen 571 TEDPEVRIAAYLILMRCNPSPSVLQRIAQSL 601 (618)
T ss_dssp TS-HHHHHHHHHHHHHT---HHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 56888999999999999776555 444333
No 115
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=90.19 E-value=4.5 Score=43.63 Aligned_cols=163 Identities=17% Similarity=0.160 Sum_probs=92.1
Q ss_pred hHHHHHHHHHHHHhhccCCcchHhHHHHHH--------HhHHHHHH-hccCCChhHHHHHHHHHHhhcchhhhhhhhhhc
Q 000737 1117 KMRRNAFAAFGALSNFGVGSQREAFLEQIH--------AMLPRLIL-HIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFN 1187 (1322)
Q Consensus 1117 ~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~--------~~LvpLLl-HL~D~~~~V~~ack~tL~~~a~~L~~~l~~lf~ 1187 (1322)
+||.+|+.+++++++..+.+....|-...+ ..-.+|+. =+.|+++.||.++..++..+=.-.+-.+..- +
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~A-e 79 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQA-E 79 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHH-H
Confidence 489999999999999644443333332221 11122222 4579999999999888866433222212111 1
Q ss_pred cccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCC-ChhhHHHHHHHHHHhcccCchhhhhhccHHHHHH
Q 000737 1188 SHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAP-WPIIQANAIYFSSSILCLCDDQHILSLFYTQVFG 1266 (1322)
Q Consensus 1188 ~~~~~~~~~l~~~~f~~~~~k~L~~~~~~~~~~~l~~~l~ylkS~-~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~ 1266 (1322)
. ..+...+|-.|-..++..+++-+...+. .+..+ ...+-.....-+..++++-|=+.+..--...++.
T Consensus 80 ~---~~~~~~sFtslS~tLa~~i~~lH~~Ll~--------~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~ 148 (182)
T PF13251_consen 80 E---SKGPSGSFTSLSSTLASMIMELHRGLLL--------ALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVT 148 (182)
T ss_pred h---cCCCCCCcccHHHHHHHHHHHHHHHHHH--------HHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHH
Confidence 1 1133456666766666666653333222 22222 2223333344445556554433332222456667
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHHH
Q 000737 1267 LLVVKLSQSADAIVRATCSSSLGWLL 1292 (1322)
Q Consensus 1267 ~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1292 (1322)
.+.. +..+-|+.||..+.-++|.+.
T Consensus 149 ~v~~-~l~~~d~~v~v~~l~~~~~l~ 173 (182)
T PF13251_consen 149 QVRP-LLRHRDPNVRVAALSCLGALL 173 (182)
T ss_pred HHHH-HHhcCCCcHHHHHHHHHHHHH
Confidence 7777 677799999999999998875
No 116
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=89.88 E-value=22 Score=44.81 Aligned_cols=156 Identities=17% Similarity=0.193 Sum_probs=84.2
Q ss_pred hHHHhHHHHHHHHhhhCChhHHHHHHHHHhhhcccCccchHHHHHHHHHHhhcCCchhchHHHHHHHHHhhcCCCChhHH
Q 000737 960 KWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVR 1039 (1322)
Q Consensus 960 ~~~~GV~lLar~l~~~~~~~~~~il~~l~~~l~s~~~~~Ri~a~aflsEll~~~~~~~~ll~~~~~~L~~~l~D~~~~VR 1039 (1322)
..++--..|+.+ .....+. .-...++...+ ..+.-+..|.-|+..+..+.+. +-+..++.+.....|++..||
T Consensus 4 ~lY~~~~~L~~a--~d~~~~~-~~y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~---l~~~Ai~a~~DLcEDed~~iR 76 (556)
T PF05918_consen 4 KLYENYEILADA--KDKSQHE-EDYKEILDGVK-GSPKEKRLAAQFIPKFFKHFPD---LQEEAINAQLDLCEDEDVQIR 76 (556)
T ss_dssp HHHHHHHHHHHT--GGGGGGH-HHHHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GG---GHHHHHHHHHHHHT-SSHHHH
T ss_pred HHHHHHhHhhcC--CCcccCH-HHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChh---hHHHHHHHHHHHHhcccHHHH
Confidence 344444455653 2222232 23333334434 3455667777888888887544 447788999999999999999
Q ss_pred hhhhhcccCCCchhHhhhHhHHHHHHHhhcccCChH---HHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCCh
Q 000737 1040 GLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDES---VQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNV 1116 (1322)
Q Consensus 1040 ~lalrGLg~l~~~~v~~~~~~lL~all~~L~d~d~~---V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~ 1116 (1322)
+.|+|||..+..+ -..+.+.+...|...|...|.. ++..|+. .++..=....++.++-+ |.+- ..+++
T Consensus 77 ~~aik~lp~~ck~-~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~---~ll~~d~k~tL~~lf~~----i~~~-~~~de 147 (556)
T PF05918_consen 77 KQAIKGLPQLCKD-NPEHVSKVADVLVQLLQTDDPVELDAVKNSLM---SLLKQDPKGTLTGLFSQ----IESS-KSGDE 147 (556)
T ss_dssp HHHHHHGGGG--T---T-HHHHHHHHHHHTT---HHHHHHHHHHHH---HHHHH-HHHHHHHHHHH----HH----HS-H
T ss_pred HHHHHhHHHHHHh-HHHHHhHHHHHHHHHHhcccHHHHHHHHHHHH---HHHhcCcHHHHHHHHHH----HHhc-ccCch
Confidence 9999999999852 1234455666666666543332 4444444 44432112233444433 3321 35567
Q ss_pred hHHHHHHHHH-HHHhh
Q 000737 1117 KMRRNAFAAF-GALSN 1131 (1322)
Q Consensus 1117 ~vR~aAi~lf-G~L~~ 1131 (1322)
.+|.-++.-+ ..+..
T Consensus 148 ~~Re~~lkFl~~kl~~ 163 (556)
T PF05918_consen 148 QVRERALKFLREKLKP 163 (556)
T ss_dssp HHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHhh
Confidence 8999998655 44443
No 117
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.87 E-value=9.6 Score=50.66 Aligned_cols=127 Identities=19% Similarity=0.161 Sum_probs=86.1
Q ss_pred cccchhhHHhHHHHh-----------ccccccCChhHHHHHHHHHHHHhhc-cCCcchHhHHHHHHHhH-HHHHHhccCC
Q 000737 1093 KDAVEPILLNLSVRL-----------RNLQVSMNVKMRRNAFAAFGALSNF-GVGSQREAFLEQIHAML-PRLILHIYDD 1159 (1322)
Q Consensus 1093 ~~~~~~~l~~l~~~l-----------rpffede~~~vR~aAi~lfG~L~~~-~~~~~~~~~~eqv~~~L-vpLLlHL~D~ 1159 (1322)
.++++.++.+++.++ -++++.|+..+|.+-..+.|++... -.+..-++.-.++-..+ --|.-|+.|-
T Consensus 292 ~k~v~~fL~elS~~~P~l~~~~l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dv 371 (1251)
T KOG0414|consen 292 PKIVGNFLVELSERVPKLMLRQLTLLVDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDV 371 (1251)
T ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcc
Confidence 344555555555444 4689999999999999999999862 22333355555666644 4455599999
Q ss_pred ChhHHHHHHHHHHhhcchhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhhHHH
Q 000737 1160 DLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQAN 1239 (1322)
Q Consensus 1160 ~~~V~~ack~tL~~~a~~L~~~l~~lf~~~~~~~~~~l~~~~f~~~~~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~a 1239 (1322)
++-||..+-..+.++. +.+. ...++.+.++.-++.-+.|-..-||++
T Consensus 372 sa~vRskVLqv~~~l~-----------~~~s----------------------~p~~~~~eV~~la~grl~DkSslVRk~ 418 (1251)
T KOG0414|consen 372 SAYVRSKVLQVFRRLF-----------QQHS----------------------IPLGSRTEVLELAIGRLEDKSSLVRKN 418 (1251)
T ss_pred cHHHHHHHHHHHHHHH-----------HccC----------------------CCccHHHHHHHHHhcccccccHHHHHH
Confidence 9999998755555432 2221 112344556667788888888999999
Q ss_pred HHHHHHHhcccCc
Q 000737 1240 AIYFSSSILCLCD 1252 (1322)
Q Consensus 1240 A~~fiG~l~~~l~ 1252 (1322)
|+..+..++.+.|
T Consensus 419 Ai~Ll~~~L~~~P 431 (1251)
T KOG0414|consen 419 AIQLLSSLLDRHP 431 (1251)
T ss_pred HHHHHHHHHhcCC
Confidence 9998877776555
No 118
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=89.82 E-value=0.52 Score=46.32 Aligned_cols=87 Identities=17% Similarity=0.263 Sum_probs=69.8
Q ss_pred HHHHHhhcCC----CChhHHhhhhhcccCCCc---hhHhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccc
Q 000737 1024 VEALCRHVSD----ESPTVRGLCLRGLVQIPS---IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAV 1096 (1322)
Q Consensus 1024 ~~~L~~~l~D----~~~~VR~lalrGLg~l~~---~~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~ 1096 (1322)
+..+.+-++| .+..-|+.+++|+|.+-. +.++...++++.++-.+++.+ +....|+.+-..++..++++++
T Consensus 13 l~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l 90 (107)
T PF08064_consen 13 LTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDL 90 (107)
T ss_pred HHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHH
Confidence 3344444444 455568889999997743 778889999999999998754 7888899999999999999999
Q ss_pred hhhHHhHHHHhccccc
Q 000737 1097 EPILLNLSVRLRNLQV 1112 (1322)
Q Consensus 1097 ~~~l~~l~~~lrpffe 1112 (1322)
++++.++..-+.|+++
T Consensus 91 ~~ll~~~~~~l~~~~~ 106 (107)
T PF08064_consen 91 GPLLDQIFAILLPLWD 106 (107)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999888888765
No 119
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.81 E-value=11 Score=48.19 Aligned_cols=156 Identities=18% Similarity=0.189 Sum_probs=103.5
Q ss_pred HHHhhh-CChhHHHHHHHHHhhhcccCccchHHHHHHHHHHhhcCCchhchHHHHHHHHHhhcCCCChhHHhhhhhcccC
Q 000737 970 GCVSIK-RPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQ 1048 (1322)
Q Consensus 970 r~l~~~-~~~~~~~il~~l~~~l~s~~~~~Ri~a~aflsEll~~~~~~~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~ 1048 (1322)
|.|+.- -+.....++.-+...+++.++.-|.+|+.....+-.-.+. ......+++.|...+.|+||.|-.-|+.+|..
T Consensus 108 rtm~~l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~-~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~e 186 (734)
T KOG1061|consen 108 RTMGCLRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPD-LVEDSGLVDALKDLLSDSNPMVVANALAALSE 186 (734)
T ss_pred hceeeEeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChh-hccccchhHHHHHHhcCCCchHHHHHHHHHHH
Confidence 444422 2335567777788888999999998888777665543322 11112356677778889999999999999998
Q ss_pred CCch----hHhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCChhHHHHHHH
Q 000737 1049 IPSI----HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFA 1124 (1322)
Q Consensus 1049 l~~~----~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~ 1124 (1322)
|... ..-...++++.-++..|.+ -.-+.-+..|..+......+.. =..+|+.++.|++.+-++.|-.+|.-
T Consensus 187 I~e~~~~~~~~~l~~~~~~~lL~al~e---c~EW~qi~IL~~l~~y~p~d~~--ea~~i~~r~~p~Lqh~n~avvlsavK 261 (734)
T KOG1061|consen 187 IHESHPSVNLLELNPQLINKLLEALNE---CTEWGQIFILDCLAEYVPKDSR--EAEDICERLTPRLQHANSAVVLSAVK 261 (734)
T ss_pred HHHhCCCCCcccccHHHHHHHHHHHHH---hhhhhHHHHHHHHHhcCCCCch--hHHHHHHHhhhhhccCCcceEeehHH
Confidence 8652 2223344556666666533 3445555555666555555542 24578999999999999888888887
Q ss_pred HHHHHhh
Q 000737 1125 AFGALSN 1131 (1322)
Q Consensus 1125 lfG~L~~ 1131 (1322)
+|=.+.+
T Consensus 262 v~l~~~~ 268 (734)
T KOG1061|consen 262 VILQLVK 268 (734)
T ss_pred HHHHHHH
Confidence 7766665
No 120
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=89.74 E-value=14 Score=43.13 Aligned_cols=109 Identities=17% Similarity=0.161 Sum_probs=78.5
Q ss_pred hHHHHHHHHH-hhhcccCccchHHHHHHHHHHhhcCCchhchHHHHHHHHHhhcCCCChhHHhhhhhcccCCCc----hh
Q 000737 979 EVQTICLILT-KSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS----IH 1053 (1322)
Q Consensus 979 ~~~~il~~l~-~~l~s~~~~~Ri~a~aflsEll~~~~~~~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~----~~ 1053 (1322)
.+..+++.++ |.++|.+..-|..|+-.++=+- ......-++-+..+...++..++.||..|++++..+.. +.
T Consensus 23 ~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~---Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 23 SLESLLDSLILPAVQSSDPAVRELALKCLGLCC---LLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH---HhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 5568887766 9999999999999987776431 11112333444555555655699999999999987642 11
Q ss_pred H--------hhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhcc
Q 000737 1054 I--------HQYATQVLSVILALLDDLDESVQLTAVSCLLTILKS 1090 (1322)
Q Consensus 1054 v--------~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~ 1090 (1322)
. ......++..+.+.|++.++++...|..|+.|++-.
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 1 123457888899999998889999999999999843
No 121
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.32 E-value=9.5 Score=48.13 Aligned_cols=194 Identities=15% Similarity=0.164 Sum_probs=114.3
Q ss_pred hHHHHHHHHHhhhcccCccchHHHHHHHHHHhhcCCc-hhchHHHHHHHHHhhcCCCChhHHhhhhhcccCCCchhHhhh
Q 000737 979 EVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGG-FDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQY 1057 (1322)
Q Consensus 979 ~~~~il~~l~~~l~s~~~~~Ri~a~aflsEll~~~~~-~~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~~~v~~~ 1057 (1322)
.+.+++.+++++..|++..-|.-..-.+.-++++... ...+...+...+..++.|-.|.||.-|+.+|..+-.+.....
T Consensus 82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee 161 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEE 161 (892)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCc
Confidence 5778889999999999988888888888887775433 345666777888889999999999999988887753110000
Q ss_pred HhHHHHHHHhhcc-cCChHHHHHHHHHHH-------HHhccCCcccchhhHHh-HHHHhccccccCChhHHHHHHHHHHH
Q 000737 1058 ATQVLSVILALLD-DLDESVQLTAVSCLL-------TILKSSSKDAVEPILLN-LSVRLRNLQVSMNVKMRRNAFAAFGA 1128 (1322)
Q Consensus 1058 ~~~lL~all~~L~-d~d~~V~leam~~L~-------~ll~~l~~~~~~~~l~~-l~~~lrpffede~~~vR~aAi~lfG~ 1128 (1322)
-.+.+++...++ |++++|+..||..+. .|+++.. +++..--. +=.++.| +-++|..+|.-+--
T Consensus 162 -~~v~n~l~~liqnDpS~EVRRaaLsnI~vdnsTlp~IveRar--DV~~anRrlvY~r~lp-----kid~r~lsi~krv~ 233 (892)
T KOG2025|consen 162 -CPVVNLLKDLIQNDPSDEVRRAALSNISVDNSTLPCIVERAR--DVSGANRRLVYERCLP-----KIDLRSLSIDKRVL 233 (892)
T ss_pred -ccHHHHHHHHHhcCCcHHHHHHHHHhhccCcccchhHHHHhh--hhhHHHHHHHHHHhhh-----hhhhhhhhHHHHHH
Confidence 112333333333 455778888876543 2333221 11100000 0011111 22566777776666
Q ss_pred HhhccCCcc----hHhHHHHHHH--------hHHHHHHhccCCCh-hHHHHHHHHHHh-hcchhhh
Q 000737 1129 LSNFGVGSQ----REAFLEQIHA--------MLPRLILHIYDDDL-SVRQACRNTLKQ-VAPFMEI 1180 (1322)
Q Consensus 1129 L~~~~~~~~----~~~~~eqv~~--------~LvpLLlHL~D~~~-~V~~ack~tL~~-~a~~L~~ 1180 (1322)
|..+|..+. +.++.+.+.+ .++-+|-.|.=++. +|+..+-.||+. ..+..++
T Consensus 234 LlewgLnDRe~sVk~A~~d~il~~Wl~~~dgni~ElL~~ldvsnss~vavk~lealf~~v~e~v~~ 299 (892)
T KOG2025|consen 234 LLEWGLNDREFSVKGALVDAILSGWLRFSDGNILELLERLDVSNSSEVAVKALEALFSGVREDVGS 299 (892)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHhhhccccHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhh
Confidence 666443222 2233333443 55666666655555 799999888888 4443333
No 122
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=89.20 E-value=1.3 Score=47.93 Aligned_cols=69 Identities=16% Similarity=0.107 Sum_probs=57.6
Q ss_pred hHHHHHHHHHhhhcCCChhhHHHHHHHHHHhcccCchhhhhhccHHHHHHHHHHHhccCCChHHHHHHHHHHHHHH
Q 000737 1217 RIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1292 (1322)
Q Consensus 1217 ~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1292 (1322)
-++.|+...+...-|+...+|.+|..+++.+++. +-+..-+.++.|+. |..||++.||..|.+.+..+.
T Consensus 5 l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~q------GLvnP~~cvp~lIA-L~ts~~~~ir~~A~~~l~~l~ 73 (187)
T PF12830_consen 5 LVQRYLKNILELCLSSDDSVRLAALQVLELILRQ------GLVNPKQCVPTLIA-LETSPNPSIRSRAYQLLKELH 73 (187)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhc------CCCChHHHHhHhhh-hhCCCChHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999999852 11234455788999 999999999999999998875
No 123
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=89.19 E-value=0.7 Score=45.34 Aligned_cols=88 Identities=17% Similarity=0.294 Sum_probs=71.1
Q ss_pred HHHHHHhhcCCCC---hh-HHhhhhhcccCCCc---hhHhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCccc
Q 000737 1023 MVEALCRHVSDES---PT-VRGLCLRGLVQIPS---IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDA 1095 (1322)
Q Consensus 1023 ~~~~L~~~l~D~~---~~-VR~lalrGLg~l~~---~~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~ 1095 (1322)
+++.+.+-++|++ |. -|+-+++++|.+-. ..+....|++..++-.+|+ .++....|+.+...++..+++++
T Consensus 12 il~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~~ 89 (107)
T smart00802 12 ILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEEE 89 (107)
T ss_pred HHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHHH
Confidence 4555556666666 33 27789999997643 7888899999999999997 45699999999999999999999
Q ss_pred chhhHHhHHHHhccccc
Q 000737 1096 VEPILLNLSVRLRNLQV 1112 (1322)
Q Consensus 1096 ~~~~l~~l~~~lrpffe 1112 (1322)
+++++-++..-+.|+++
T Consensus 90 l~~ll~~~~~~i~~~~~ 106 (107)
T smart00802 90 LGPLLDQIFAAILPLWP 106 (107)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999988888877765
No 124
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=88.86 E-value=1 Score=57.68 Aligned_cols=128 Identities=17% Similarity=0.190 Sum_probs=99.5
Q ss_pred chhhHHHhHHHHHHHHh-hhCChhHHHHHHHHHhhhcccCccchHHHHHHHHHHhhc-CCchhchHHHHHHHHHhhcCCC
Q 000737 957 DKEKWINLIGDVAGCVS-IKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRY-SGGFDSLLEQMVEALCRHVSDE 1034 (1322)
Q Consensus 957 ~~~~~~~GV~lLar~l~-~~~~~~~~~il~~l~~~l~s~~~~~Ri~a~aflsEll~~-~~~~~~ll~~~~~~L~~~l~D~ 1034 (1322)
...-|+.|...+....- +---|.++.++..+...|+=++..-|+.+.-.+.-++-. +......+.++++.++.--.|+
T Consensus 883 ~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~ 962 (1030)
T KOG1967|consen 883 QKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDN 962 (1030)
T ss_pred chhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCC
Confidence 45677777766554321 112357888888889999989999999888888776654 3344566678899998888887
Q ss_pred C---hhHHhhhhhcccCCCc----hhHhhhHhHHHHHHHhhcccCChHHHHHHHHHH
Q 000737 1035 S---PTVRGLCLRGLVQIPS----IHIHQYATQVLSVILALLDDLDESVQLTAVSCL 1084 (1322)
Q Consensus 1035 ~---~~VR~lalrGLg~l~~----~~v~~~~~~lL~all~~L~d~d~~V~leam~~L 1084 (1322)
+ .+||..|+++|+.++. .-...|++.|+.|+...|+|+-.-|+.||..+=
T Consensus 963 ~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 963 DNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred CcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence 7 7899999999998865 456789999999999999998888999998863
No 125
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=88.78 E-value=4.1 Score=49.74 Aligned_cols=133 Identities=17% Similarity=0.134 Sum_probs=88.2
Q ss_pred ccccccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHHhc--cCCChhHHHHHHHHHHhhcchhhhhhhhh
Q 000737 1108 RNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHI--YDDDLSVRQACRNTLKQVAPFMEIGVYGI 1185 (1322)
Q Consensus 1108 rpffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL--~D~~~~V~~ack~tL~~~a~~L~~~l~~l 1185 (1322)
..+..|.++-+|..-+...|- ++++... ...|.=++|. .|.|.+||.|+--||+-++-
T Consensus 522 ~ell~d~ds~lRy~G~fs~al--Ay~GTgn---------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~--------- 581 (926)
T COG5116 522 NELLYDKDSILRYNGVFSLAL--AYVGTGN---------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCC--------- 581 (926)
T ss_pred HHHhcCchHHhhhccHHHHHH--HHhcCCc---------chhHhhhheeecccCchHHHHHHHHheeeeEe---------
Confidence 346778888899887666553 3333222 2456667775 89999999999888876441
Q ss_pred hccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhhHHHHHHHHHHhcccCchhhhhhccHHHHH
Q 000737 1186 FNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVF 1265 (1322)
Q Consensus 1186 f~~~~~~~~~~l~~~~f~~~~~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~ 1265 (1322)
+ +- +.+ +.+.-...+|..+++|.+.|..+|.....-.+ ....
T Consensus 582 --~----D~------~~l------------------v~tvelLs~shN~hVR~g~AvaLGiacag~G~--------~~a~ 623 (926)
T COG5116 582 --D----DR------DLL------------------VGTVELLSESHNFHVRAGVAVALGIACAGTGD--------KVAT 623 (926)
T ss_pred --c----Cc------chh------------------hHHHHHhhhccchhhhhhhHHHhhhhhcCCcc--------HHHH
Confidence 1 11 111 11122244678889999999999976544322 2233
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHHHHhcccc
Q 000737 1266 GLLVVKLSQSADAIVRATCSSSLGWLLKSINSHS 1299 (1322)
Q Consensus 1266 ~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~~~~ 1299 (1322)
.-|.. |-.||...||..|-.|++.+.-.||.-.
T Consensus 624 diL~~-L~~D~~dfVRQ~AmIa~~mIl~Q~n~~L 656 (926)
T COG5116 624 DILEA-LMYDTNDFVRQSAMIAVGMILMQCNPEL 656 (926)
T ss_pred HHHHH-HhhCcHHHHHHHHHHHHHHHHhhcCccc
Confidence 34444 7789999999999999999988877543
No 126
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=88.54 E-value=1.2 Score=42.55 Aligned_cols=69 Identities=12% Similarity=0.111 Sum_probs=40.6
Q ss_pred HHHHHHhhhcccCccchHHHHHHHHHHhhcCCchhchHHHHHHHHHhhcCCCChhHHhhhhhcccCCCc
Q 000737 983 ICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS 1051 (1322)
Q Consensus 983 il~~l~~~l~s~~~~~Ri~a~aflsEll~~~~~~~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~ 1051 (1322)
.++.....++++..+-|.-|..-+..++..........+.++..+...++|+++-|=--|++||+.++.
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 344555556666666666666666666665441122334556666666666666666666666666654
No 127
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=88.42 E-value=2.9 Score=52.68 Aligned_cols=223 Identities=13% Similarity=0.137 Sum_probs=142.0
Q ss_pred CcHHHHHHHHhcC--CCCchhhHHHhHHHHHHHHhhhCChhHHHHHHHHHhhhcccCccchHHHHHHHHHHhhcCC--ch
Q 000737 941 GDLEMRKILARDG--EQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSG--GF 1016 (1322)
Q Consensus 941 g~~~~~~~Le~~~--~w~~~~~~~~GV~lLar~l~~~~~~~~~~il~~l~~~l~s~~~~~Ri~a~aflsEll~~~~--~~ 1016 (1322)
+.-++...|++-. .-++...|..|...-.+.+.+.-+ ...++..+...+.... +|-.|++=++..-. +.
T Consensus 252 ~fvd~~~fLeel~lks~~eK~~Ff~~L~~~l~~~pe~i~--~~kvlp~Ll~~~~~g~-----a~~~~ltpl~k~~k~ld~ 324 (690)
T KOG1243|consen 252 DFVDTLLFLEELRLKSVEEKQKFFSGLIDRLDNFPEEII--ASKVLPILLAALEFGD-----AASDFLTPLFKLGKDLDE 324 (690)
T ss_pred hHHHHHHHHHhcccCcHHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHhhccc-----cchhhhhHHHHhhhhccc
Confidence 3334445555422 212566777777664454443222 2344444444433333 44455555444311 12
Q ss_pred hchHHHHHHHHHhhcCCCChhHHhhhhhcccCCCc-hhHhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCccc
Q 000737 1017 DSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS-IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDA 1095 (1322)
Q Consensus 1017 ~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~-~~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~ 1095 (1322)
+..-..+++.|.+.++-++..||..=|+++-+... =.-..+..+++|-+..|+.|.+..++..++..+..+...|+...
T Consensus 325 ~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~ 404 (690)
T KOG1243|consen 325 EEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRN 404 (690)
T ss_pred cccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhh
Confidence 23445689999999999999999999999886654 11123567899999999999999999999999999999998887
Q ss_pred chhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhH-HHHHHhccCCChhHHHHHHHHHHhh
Q 000737 1096 VEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAML-PRLILHIYDDDLSVRQACRNTLKQV 1174 (1322)
Q Consensus 1096 ~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~L-vpLLlHL~D~~~~V~~ack~tL~~~ 1174 (1322)
++.=+....-++++ |+...+|.....++|.++.+-.... ++ +.| .++.--++|+=+.-|+|.-.+|...
T Consensus 405 Ln~Ellr~~ar~q~---d~~~~irtntticlgki~~~l~~~~----R~---~vL~~aftralkdpf~paR~a~v~~l~at 474 (690)
T KOG1243|consen 405 LNGELLRYLARLQP---DEHGGIRTNTTICLGKIAPHLAASV----RK---RVLASAFTRALKDPFVPARKAGVLALAAT 474 (690)
T ss_pred hcHHHHHHHHhhCc---cccCcccccceeeecccccccchhh----hc---cccchhhhhhhcCCCCCchhhhhHHHhhc
Confidence 77777777777777 8899999999988888876421000 01 122 2222246666666666666666665
Q ss_pred cchhhh
Q 000737 1175 APFMEI 1180 (1322)
Q Consensus 1175 a~~L~~ 1180 (1322)
..++--
T Consensus 475 ~~~~~~ 480 (690)
T KOG1243|consen 475 QEYFDQ 480 (690)
T ss_pred ccccch
Confidence 554433
No 128
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=88.41 E-value=71 Score=39.18 Aligned_cols=294 Identities=18% Similarity=0.171 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHHHhcCCcch-HHHHHHhhHHHHHHHHHHhhhhccCCCCCCCCh--HHHHHHHHHHHHHHhCcHHHHHHH
Q 000737 873 ILQAAILALTAFFRGGGKVG-KKAVEKSYAPVLAALTLQLGSCHGLASSGQHEP--LRAILTSFQAFCECVGDLEMRKIL 949 (1322)
Q Consensus 873 ~~laA~~aL~Ell~~~~~~~-~~~v~~~fp~Lf~aLL~ql~~~~~l~~~~~~~P--~~~aleAlk~ll~~~g~~~~~~~L 949 (1322)
...++..+|+.++....+.. .....++|.+.+.-.++...........+ .++ ...+-..++.......-.+.-+.+
T Consensus 59 ~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~-~~~~~L~~~~~l~~~iv~~l~~~~q~~~~ 137 (415)
T PF12460_consen 59 YCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSD-LDDRVLELLSRLINLIVRSLSPEKQQEIL 137 (415)
T ss_pred HHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccc-cchHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 35678888998888764333 23566666664544444443333221111 122 111112121211111111111112
Q ss_pred Hh----------cCCCC-----chhhHHHhHHHHHHHHhhhCC----hhHHHHHHHHHhhhcc-cCccchHHHHHHHHHH
Q 000737 950 AR----------DGEQN-----DKEKWINLIGDVAGCVSIKRP----KEVQTICLILTKSINR-QQRFQREAAAAALSEF 1009 (1322)
Q Consensus 950 e~----------~~~w~-----~~~~~~~GV~lLar~l~~~~~----~~~~~il~~l~~~l~s-~~~~~Ri~a~aflsEl 1009 (1322)
++ ...+. ..+....-+.+.+..++--++ +....++..+.....+ .++..|..+.-.++-+
T Consensus 138 ~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~L 217 (415)
T PF12460_consen 138 DELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASL 217 (415)
T ss_pred HHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 20 01111 112344455555655553322 2455677777776555 4588889999999999
Q ss_pred hhcCCchhchHHHHHHHHHhhc-CCCChhHHhhhhhcccCCCc---hhHhhhHhHHHHHHHhhcccCChHHHHHHHHHHH
Q 000737 1010 VRYSGGFDSLLEQMVEALCRHV-SDESPTVRGLCLRGLVQIPS---IHIHQYATQVLSVILALLDDLDESVQLTAVSCLL 1085 (1322)
Q Consensus 1010 l~~~~~~~~ll~~~~~~L~~~l-~D~~~~VR~lalrGLg~l~~---~~v~~~~~~lL~all~~L~d~d~~V~leam~~L~ 1085 (1322)
+|...... .++.++..+.... .+.++.-|.-+++.+++++. -+.++....+++-++..|++ +++-..|..+++
T Consensus 218 vNK~~~~~-~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~ 294 (415)
T PF12460_consen 218 VNKWPDDD-DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFG 294 (415)
T ss_pred HcCCCChh-hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHh
Confidence 99843322 3444555555544 56677777778888877764 22334566678888888876 556666666666
Q ss_pred HHhccCCc-------ccch-----hhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHH
Q 000737 1086 TILKSSSK-------DAVE-----PILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLI 1153 (1322)
Q Consensus 1086 ~ll~~l~~-------~~~~-----~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLL 1153 (1322)
-++...+. -.++ .++..+...+-..|...++..|..-..++..+.+... +..+..+ +..+.||+
T Consensus 295 il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP---~~vl~~~-l~~LlPLL 370 (415)
T PF12460_consen 295 ILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVP---KSVLLPE-LPTLLPLL 370 (415)
T ss_pred hHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCC---HHHHHHH-HHHHHHHH
Confidence 66643111 1111 3455667777777888888899999999999998543 4445555 45577777
Q ss_pred H-hccCCChhHHHHHHHHHHhh
Q 000737 1154 L-HIYDDDLSVRQACRNTLKQV 1174 (1322)
Q Consensus 1154 l-HL~D~~~~V~~ack~tL~~~ 1174 (1322)
+ -|.=+|++|+.++-.||..+
T Consensus 371 lqsL~~~~~~v~~s~L~tL~~~ 392 (415)
T PF12460_consen 371 LQSLSLPDADVLLSSLETLKMI 392 (415)
T ss_pred HHHhCCCCHHHHHHHHHHHHHH
Confidence 7 56556777888877776653
No 129
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=88.11 E-value=1.6 Score=49.01 Aligned_cols=49 Identities=22% Similarity=0.343 Sum_probs=34.2
Q ss_pred ccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHHhccCCChhHHHHHHHHHHhh
Q 000737 1112 VSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQV 1174 (1322)
Q Consensus 1112 ede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~ 1174 (1322)
+.|.+-||.-|..++|+++. .+ ++--|--++.|+++-|++.|-.+|-.+
T Consensus 230 ~~E~pMVRhEaAeALGaIa~---e~-----------~~~vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 230 ETEHPMVRHEAAEALGAIAD---ED-----------CVEVLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred hhcchHHHHHHHHHHHhhcC---HH-----------HHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 45667788888888888775 11 333344478888888888888887553
No 130
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.11 E-value=19 Score=45.63 Aligned_cols=207 Identities=18% Similarity=0.182 Sum_probs=125.4
Q ss_pred hhcccCChHHHHHHHHHHHHHhccCCcccch------------hhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccC
Q 000737 1067 ALLDDLDESVQLTAVSCLLTILKSSSKDAVE------------PILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGV 1134 (1322)
Q Consensus 1067 ~~L~d~d~~V~leam~~L~~ll~~l~~~~~~------------~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~ 1134 (1322)
.++.+ +.+|.+-++..+.+.+..-..-.++ ...-.|+.-+..++.+.++=+|--||.++-.+--
T Consensus 98 qSf~~-~tdvlmL~tn~~rkdl~S~n~ye~giAL~GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFL--- 173 (877)
T KOG1059|consen 98 QSFHD-DTDVLMLTTNLLRKDLNSSNVYEVGLALSGLSCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFL--- 173 (877)
T ss_pred HhhcC-CccHHHHHHHHHHHHhccCccchhhheecccccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH---
Confidence 34443 4567777777777776532221111 1233555666778888888899888877665432
Q ss_pred CcchHhHHHHHHHhHHHHHHhccCCChhHHHHHHHHHHhhcc-----hh---------------hh---hhhhhhcccc-
Q 000737 1135 GSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAP-----FM---------------EI---GVYGIFNSHC- 1190 (1322)
Q Consensus 1135 ~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~-----~L---------------~~---~l~~lf~~~~- 1190 (1322)
-|=|-+-.+++.|.-.|.|++|.|..|+-..+|..|. +| +| ++-.+|....
T Consensus 174 -----kYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtp 248 (877)
T KOG1059|consen 174 -----KYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTP 248 (877)
T ss_pred -----hhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHHHhhccc
Confidence 1334566788999999999999999999999998881 11 45 4456666542
Q ss_pred CCCCCCCC--------------------hHHHHHHHHHH-HHH---hCcchHHHHHHHHHhhhcCCChhhHHHHHHHHHH
Q 000737 1191 FNSDHRSD--------------------YETFVRDLTRQ-FVQ---HFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSS 1246 (1322)
Q Consensus 1191 ~~~~~~l~--------------------~~~f~~~~~k~-L~~---~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~ 1246 (1322)
++. ++. |+ -++.+..- +.. .+...+.-.+.-.=.|+.++.+++|=-+.+..|.
T Consensus 249 lEP--RLgKKLieplt~li~sT~AmSLlYE-CvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~K 325 (877)
T KOG1059|consen 249 LEP--RLGKKLIEPITELMESTVAMSLLYE-CVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSK 325 (877)
T ss_pred cCc--hhhhhhhhHHHHHHHhhHHHHHHHH-HHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHH
Confidence 111 111 11 11111111 111 2233444455555568888888888877777777
Q ss_pred hcccCchhhhhhccHHHHHHHHHHHhccCCChHHHHHHHHHHHHHH
Q 000737 1247 ILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1292 (1322)
Q Consensus 1247 l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1292 (1322)
+++..+.-- +....++-+++.|.|++||-+|..=++-+.
T Consensus 326 I~ktHp~~V-------qa~kdlIlrcL~DkD~SIRlrALdLl~gmV 364 (877)
T KOG1059|consen 326 ILKTHPKAV-------QAHKDLILRCLDDKDESIRLRALDLLYGMV 364 (877)
T ss_pred HhhhCHHHH-------HHhHHHHHHHhccCCchhHHHHHHHHHHHh
Confidence 776544221 112224444788999999998887766554
No 131
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=87.84 E-value=38 Score=42.92 Aligned_cols=261 Identities=11% Similarity=0.098 Sum_probs=136.8
Q ss_pred HHHHhhcCCCChhHHhhhhhc---ccCCCchhHhhhHhHHHHHHHhhcccCC-hHHHHHHHHHHHHHhccCCcccchhhH
Q 000737 1025 EALCRHVSDESPTVRGLCLRG---LVQIPSIHIHQYATQVLSVILALLDDLD-ESVQLTAVSCLLTILKSSSKDAVEPIL 1100 (1322)
Q Consensus 1025 ~~L~~~l~D~~~~VR~lalrG---Lg~l~~~~v~~~~~~lL~all~~L~d~d-~~V~leam~~L~~ll~~l~~~~~~~~l 1100 (1322)
..|.+.+=.|+....-++..- +++.+..+.-.++=..+--+++.+-... ..+.+..+ |++++..+.++.-.
T Consensus 269 ~~LL~~vL~~~~l~~lLa~DvWCFlaRygtaeLc~~hv~~L~~Lik~lp~~~~~~~~L~~L--L~Rl~~~m~~~~q~--- 343 (559)
T PF14868_consen 269 RFLLENVLHPHFLCSLLAMDVWCFLARYGTAELCAHHVNLLAHLIKSLPSSSYQLINLSIL--LRRLFFLMAPDHQS--- 343 (559)
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHcCCcchhHhhHHHH--HHHHHHhcCHHHHH---
Confidence 356666667888888888777 6777764333333334445555554222 22334444 77777666655433
Q ss_pred HhHHHHhccccc-------------cCChhHHHHHHHHHHHHh-----hccC-CcchHhHHHHHHHhHHHHHHhccCCCh
Q 000737 1101 LNLSVRLRNLQV-------------SMNVKMRRNAFAAFGALS-----NFGV-GSQREAFLEQIHAMLPRLILHIYDDDL 1161 (1322)
Q Consensus 1101 ~~l~~~lrpffe-------------de~~~vR~aAi~lfG~L~-----~~~~-~~~~~~~~eqv~~~LvpLLlHL~D~~~ 1161 (1322)
++..+..|.-+ .=.+.+|.-+..=+.+.+ ++-. +.....-.++....+..++...++...
T Consensus 344 -~~v~~f~p~~~~~n~~lw~~~~~~~L~~~lr~~~~~~i~~~~~~~~~~~~~~~~~s~g~l~~~~~~LsalL~~c~~~~~ 422 (559)
T PF14868_consen 344 -EFVQDFSPSAETENLLLWEGFPLNALSDELRKQIVQEIFTLCFAFCQKWLSPSSCSLGELGQLNFALSALLQVCNSSGS 422 (559)
T ss_pred -HHHHhcCccccccchHHHHhccHHhCCHHHHHHHHHHHHHHHHHHHHHhcccCCcCcchHhHHHHHHHHHHHHhccccc
Confidence 33344444412 223334444332211111 1111 222333445555556566655555554
Q ss_pred hHHHHHHHHHHhhcchhhhhh--hhhhccccCCCCCCCChHHHHHHHHHHHHHhC-cchHHHHHHHHHhhhcC-CChhhH
Q 000737 1162 SVRQACRNTLKQVAPFMEIGV--YGIFNSHCFNSDHRSDYETFVRDLTRQFVQHF-PSRIDSYMGSTIQAFEA-PWPIIQ 1237 (1322)
Q Consensus 1162 ~V~~ack~tL~~~a~~L~~~l--~~lf~~~~~~~~~~l~~~~f~~~~~k~L~~~~-~~~~~~~l~~~l~ylkS-~~~~IR 1237 (1322)
.+-.....++-.+..-+...+ +.+-..+.++. . -..+-.+...+.+.. |+.+...+...-..+++ |-..+|
T Consensus 423 ~~d~~~~~~i~~ii~~lw~~~~~~~v~~~~~l~~----~-~~~lL~l~~~~~~~l~~~~i~qv~~~l~~l~~~~pp~~~k 497 (559)
T PF14868_consen 423 TIDMKDQTFIVEIISQLWSFLSSKQVSSQPYLQQ----T-LSLLLSLLSFFIQLLDPQLIEQVLTELTSLFKSEPPDHVK 497 (559)
T ss_pred ccCHHHHHHHHHHHHHHHHHhchhhhccchHHHH----H-HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhhCCCccch
Confidence 444444444433332222222 11111110000 0 112233344444444 66777777766667744 344599
Q ss_pred HHHHHHHHHhcccCchhhhhhccHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhcc
Q 000737 1238 ANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSINS 1297 (1322)
Q Consensus 1238 ~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~~ 1297 (1322)
-+++.|+|.+.+...++.....-...+..-+ ..|++|.+..|+..|-+|.|+|...++.
T Consensus 498 l~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf-~~LL~d~~Wll~q~ALeAF~~FAe~T~~ 556 (559)
T PF14868_consen 498 LALLDFLSSLGKLFIPESDQNPVSPALSELF-HMLLADRHWLLHQHALEAFGQFAERTSH 556 (559)
T ss_pred HHHHHHHHHhccccCCccccchhhhHHHHHH-HHHhcCCcHHHHHHHHHHHHHHhccCCc
Confidence 9999999999975544443222233343333 4489999999999999999999887764
No 132
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=87.46 E-value=1.3e+02 Score=41.86 Aligned_cols=272 Identities=13% Similarity=0.126 Sum_probs=150.4
Q ss_pred hHHHhHHHHHHHHhhhCChhHHHHHHHHHhhhcccCccchHHHHHHHHHHhhc-CCc---hhchHHHHHHHHHhhcCCCC
Q 000737 960 KWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRY-SGG---FDSLLEQMVEALCRHVSDES 1035 (1322)
Q Consensus 960 ~~~~GV~lLar~l~~~~~~~~~~il~~l~~~l~s~~~~~Ri~a~aflsEll~~-~~~---~~~ll~~~~~~L~~~l~D~~ 1035 (1322)
.-.+++.-|+++++.. .+|++++..-|+-.+..++|+++- .+. ....++.+...+..
T Consensus 41 ~~~~~~~pl~~~l~~~-------------~~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~------ 101 (1266)
T KOG1525|consen 41 LDLASLLPLADHLIKD-------------FLLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILS------ 101 (1266)
T ss_pred hhHHHHHHHHHHHhhH-------------HHhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHH------
Confidence 4455555666666542 467799999999999999999983 232 22355554444422
Q ss_pred hhHHhhhhhcccCCCchhHhhhH---hHH---HHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhcc
Q 000737 1036 PTVRGLCLRGLVQIPSIHIHQYA---TQV---LSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRN 1109 (1322)
Q Consensus 1036 ~~VR~lalrGLg~l~~~~v~~~~---~~l---L~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrp 1109 (1322)
.++|||..-...-.+|. ..+ -.+++--+.| .++.+.+-....-.++..--.+.+-.
T Consensus 102 ------q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d-~~e~~~~~f~~f~d~~~~~~~~~v~~----------- 163 (1266)
T KOG1525|consen 102 ------QFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLED-CQELVHELFRTFFDLARKGHPKKVFN----------- 163 (1266)
T ss_pred ------HHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccc-hHHHHHHHHHHHHHHHhccccHHHHH-----------
Confidence 34677766531111111 011 1222222222 23444444444444442211111110
Q ss_pred ccccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHH-hccCCChhH----HHHHHHHHHhhcchhhhhhhh
Q 000737 1110 LQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLIL-HIYDDDLSV----RQACRNTLKQVAPFMEIGVYG 1184 (1322)
Q Consensus 1110 ffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLl-HL~D~~~~V----~~ack~tL~~~a~~L~~~l~~ 1184 (1322)
|++++... ..-.+.|...++-++| ||--+.++. +.-+..-+.+||.-+...+..
T Consensus 164 ----------------~~~i~~~l-----i~e~d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~ 222 (1266)
T KOG1525|consen 164 ----------------MLDIAIML-----ITEEDTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIAN 222 (1266)
T ss_pred ----------------HHHHHHHH-----HHhhccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHH
Confidence 33333310 0011223333333333 555554443 333444478888776664443
Q ss_pred hhccccCCCC-CCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhhHHHHHHHHHHhcccCchhhhhhccHHH
Q 000737 1185 IFNSHCFNSD-HRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQ 1263 (1322)
Q Consensus 1185 lf~~~~~~~~-~~l~~~~f~~~~~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~ 1263 (1322)
.++....... ..++-..++.++.-.|-.-.|+.+.-.+-+.-.-+.|.+...|.-|+..+|.+......+.- -....
T Consensus 223 f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~--~~~~~ 300 (1266)
T KOG1525|consen 223 FLNSCLTEYKSRQSSLKIKYHELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS--ETYDD 300 (1266)
T ss_pred HHHHHHhhccccccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc--ccchH
Confidence 3333321111 22333444555556666667778888888888889999999999999999999865433322 22466
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHH
Q 000737 1264 VFGLLVVKLSQSADAIVRATCSSSLGWLL 1292 (1322)
Q Consensus 1264 l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1292 (1322)
++.++.. -..|-++.||..+.+......
T Consensus 301 ~~~~fl~-r~~D~~~~vR~~~v~~~~~~l 328 (1266)
T KOG1525|consen 301 LWSAFLG-RFNDISVEVRMECVESIKQCL 328 (1266)
T ss_pred HHHHHHH-HhccCChhhhhhHHHHhHHHH
Confidence 8888888 488999999999888765544
No 133
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=87.39 E-value=1.6 Score=46.77 Aligned_cols=87 Identities=15% Similarity=0.237 Sum_probs=73.4
Q ss_pred hHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhc--cCCc
Q 000737 1059 TQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNF--GVGS 1136 (1322)
Q Consensus 1059 ~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~--~~~~ 1136 (1322)
...||.+.+||.+.+.+-..-|..+...++..-..+.+-|++++|...||.-++..+++|..++..++-.|+.. +.|+
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~ 116 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGE 116 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhH
Confidence 35799999999999999999999999999998566778999999999999999999999999999999999542 3344
Q ss_pred chHhHHHHH
Q 000737 1137 QREAFLEQI 1145 (1322)
Q Consensus 1137 ~~~~~~eqv 1145 (1322)
.--|+..|+
T Consensus 117 aLvPyyrqL 125 (183)
T PF10274_consen 117 ALVPYYRQL 125 (183)
T ss_pred HHHHHHHHH
Confidence 445554443
No 134
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=87.27 E-value=2.7 Score=41.27 Aligned_cols=78 Identities=14% Similarity=0.142 Sum_probs=68.9
Q ss_pred ChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHH
Q 000737 1073 DESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRL 1152 (1322)
Q Consensus 1073 d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpL 1152 (1322)
+..-...++.+++.++. +....+.++.++|+--|+.-++.+ ++|..|++....+.+.-..++-.++.+|+...++|+
T Consensus 28 ~~~ek~~~l~si~~lI~-~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l~~~ 104 (107)
T PF08064_consen 28 PIPEKKRALRSIEELIK-LGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDLGPLLDQIFAILLPL 104 (107)
T ss_pred CHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHh
Confidence 34577889999999998 778899999999999999998876 999999999999999777788899999999998886
Q ss_pred H
Q 000737 1153 I 1153 (1322)
Q Consensus 1153 L 1153 (1322)
.
T Consensus 105 ~ 105 (107)
T PF08064_consen 105 W 105 (107)
T ss_pred c
Confidence 4
No 135
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=86.78 E-value=3.5 Score=51.92 Aligned_cols=135 Identities=16% Similarity=0.191 Sum_probs=85.1
Q ss_pred Hhccc-cccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHHhccC-CChhHHHHHHHHHHhhcchhhhhhh
Q 000737 1106 RLRNL-QVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYD-DDLSVRQACRNTLKQVAPFMEIGVY 1183 (1322)
Q Consensus 1106 ~lrpf-fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D-~~~~V~~ack~tL~~~a~~L~~~l~ 1183 (1322)
++.++ ..|.|++||.+|..++|=++- ++| +|.... +--|.+ -||-||-.+..||+.++.
T Consensus 558 ~lLh~aVsD~nDDVrRaAVialGFVl~------~dp--~~~~s~----V~lLses~N~HVRyGaA~ALGIaCA------- 618 (929)
T KOG2062|consen 558 RLLHVAVSDVNDDVRRAAVIALGFVLF------RDP--EQLPST----VSLLSESYNPHVRYGAAMALGIACA------- 618 (929)
T ss_pred HhhcccccccchHHHHHHHHHheeeEe------cCh--hhchHH----HHHHhhhcChhhhhhHHHHHhhhhc-------
Confidence 33444 689999999999999998774 122 222222 222333 489999999999998764
Q ss_pred hhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhhHHHHHHHHHHhcccCchhhhhhcc-HH
Q 000737 1184 GIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLF-YT 1262 (1322)
Q Consensus 1184 ~lf~~~~~~~~~~l~~~~f~~~~~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~~~~~~~~~-~e 1262 (1322)
+.| + .-|..|.+ +..++|-..||+.|.+-.+.++..-+++.+.++. .-
T Consensus 619 --------GtG--~-------~eAi~lLe--------------pl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~fr 667 (929)
T KOG2062|consen 619 --------GTG--L-------KEAINLLE--------------PLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFR 667 (929)
T ss_pred --------CCC--c-------HHHHHHHh--------------hhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHH
Confidence 233 1 11122221 2445788889999999999888655555554431 12
Q ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHHHH
Q 000737 1263 QVFGLLVVKLSQSADAIVRATCSSSLGWLL 1292 (1322)
Q Consensus 1263 ~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1292 (1322)
..+..++. -+.+|..+.-.|.-|-|.+-
T Consensus 668 k~l~kvI~--dKhEd~~aK~GAilAqGild 695 (929)
T KOG2062|consen 668 KQLEKVIN--DKHEDGMAKFGAILAQGILD 695 (929)
T ss_pred HHHHHHhh--hhhhHHHHHHHHHHHhhhhh
Confidence 22222222 35688888888988888775
No 136
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=86.71 E-value=2.4 Score=45.03 Aligned_cols=119 Identities=17% Similarity=0.227 Sum_probs=86.1
Q ss_pred hHHHHHHHHHhhhcccCccchHHHHHHHHHHhhcCC-c-----hhchHHHHHHHHHhhcCCCChhHHhhhhhcccCCCc-
Q 000737 979 EVQTICLILTKSINRQQRFQREAAAAALSEFVRYSG-G-----FDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS- 1051 (1322)
Q Consensus 979 ~~~~il~~l~~~l~s~~~~~Ri~a~aflsEll~~~~-~-----~~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~- 1051 (1322)
.+......+...++|.+...|.+|+..+...+..++ + -..+++.++..|.+ +..+.++.+++..|+.+-.
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~---~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEK---PDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHHHHH
Confidence 778889999999999999999999999888877642 2 23455555555544 4567789999999886632
Q ss_pred ---------hhHhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhH
Q 000737 1052 ---------IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNL 1103 (1322)
Q Consensus 1052 ---------~~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l 1103 (1322)
+-.....+.++.+++..+++ +.+...++.+|..++..- ....+|+.-++
T Consensus 99 ~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~-ptt~rp~~~ki 156 (165)
T PF08167_consen 99 IRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHH-PTTFRPFANKI 156 (165)
T ss_pred hcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHC-CccccchHHHH
Confidence 22345567778888887765 578889999999999754 34555555444
No 137
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.34 E-value=29 Score=44.63 Aligned_cols=162 Identities=15% Similarity=0.111 Sum_probs=89.8
Q ss_pred CCCchhhHHHhHHHHHHHHhhhCChhHHHHHHHHHhhhcccCccchHHHHHHHHHHhhcCCchhchHHHHHHHHHhhcCC
Q 000737 954 EQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSD 1033 (1322)
Q Consensus 954 ~w~~~~~~~~GV~lLar~l~~~~~~~~~~il~~l~~~l~s~~~~~Ri~a~aflsEll~~~~~~~~ll~~~~~~L~~~l~D 1033 (1322)
+..++-.+..+|...++++-+ .++...+++.++-..+.+..+.--.=|+-..+.|=+... ..+...+.+|.-.+..
T Consensus 218 ~~~~~~A~~~lir~~~~~l~~-~~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~---r~l~pavs~Lq~flss 293 (865)
T KOG1078|consen 218 SLKSPLAVCMLIRIASELLKE-NQQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNS---RELAPAVSVLQLFLSS 293 (865)
T ss_pred cccchhHHHHHHHHHHHHhhh-cccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCH---hhcchHHHHHHHHhcC
Confidence 333666677777775555543 354566677777777766665544444333333322211 1112256677777888
Q ss_pred CChhHHhhhhhcccCCCchhHhhhHhHHHHHHHhhc----ccCChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhcc
Q 000737 1034 ESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALL----DDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRN 1109 (1322)
Q Consensus 1034 ~~~~VR~lalrGLg~l~~~~v~~~~~~lL~all~~L----~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrp 1109 (1322)
|.+..|-.|+|-|-.+|.. +|+.+.++=--| .|.+..|..-|+..|-+-.. ..-...+..+|-.
T Consensus 294 p~~~lRfaAvRtLnkvAm~-----~P~~v~~cN~elE~lItd~NrsIat~AITtLLKTG~-------e~sv~rLm~qI~~ 361 (865)
T KOG1078|consen 294 PKVALRFAAVRTLNKVAMK-----HPQAVTVCNLDLESLITDSNRSIATLAITTLLKTGT-------ESSVDRLMKQISS 361 (865)
T ss_pred cHHHHHHHHHHHHHHHHHh-----CCccccccchhHHhhhcccccchhHHHHHHHHHhcc-------hhHHHHHHHHHHH
Confidence 9999999999988877751 122222221112 22234455555555544332 2223455566667
Q ss_pred ccccCChhHHHHHHHHHHHHhh
Q 000737 1110 LQVSMNVKMRRNAFAAFGALSN 1131 (1322)
Q Consensus 1110 ffede~~~vR~aAi~lfG~L~~ 1131 (1322)
|..|-+++.+...+.+..+|+.
T Consensus 362 fv~disDeFKivvvdai~sLc~ 383 (865)
T KOG1078|consen 362 FVSDISDEFKIVVVDAIRSLCL 383 (865)
T ss_pred HHHhccccceEEeHHHHHHHHh
Confidence 7777777766666666666654
No 138
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=85.79 E-value=22 Score=42.82 Aligned_cols=52 Identities=27% Similarity=0.366 Sum_probs=43.3
Q ss_pred CCChhhHHHHHHHHHHhcccCchhhhhhccHHHHHHHHHHHhccCCChHHHHHHHHHH
Q 000737 1231 APWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSL 1288 (1322)
Q Consensus 1231 S~~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL 1288 (1322)
+..|-+|+.|.+|+-.+.++++++++ ..+++.+.. .+++++..|+.-||.|+
T Consensus 319 ~~~piLka~aik~~~~Fr~~l~~~~l-----~~~~~~l~~-~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 319 NSHPILKADAIKFLYTFRNQLPKEQL-----LQIFPLLVN-HLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp -S-HHHHHHHHHHHHHHGGGS-HHHH-----HHHHHHHHH-HTTSS-HHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHhhCCHHHH-----HHHHHHHHH-HhCCCCcchhhhhhhhC
Confidence 56788999999999999999998874 778899998 89999999999999884
No 139
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.65 E-value=16 Score=50.12 Aligned_cols=220 Identities=15% Similarity=0.179 Sum_probs=150.5
Q ss_pred HHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccCCcchHhH
Q 000737 1062 LSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAF 1141 (1322)
Q Consensus 1062 L~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~~~~ 1141 (1322)
+.-+++.|.-.|+.--..|+.-|+.+.+..+......+++..+.-...+.-|++..||.+.+..|-.+.... ++.+
T Consensus 43 l~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~l----kk~l 118 (1312)
T KOG0803|consen 43 LDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKL----KKKL 118 (1312)
T ss_pred HHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHH----HHHh
Confidence 555666666678888899999999999888777776777777777777888999999999999999999733 2333
Q ss_pred HHHHHHhHHHHHHhccCCChhHHHHHHHHHHhhcchhhh-hhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHH
Q 000737 1142 LEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDS 1220 (1322)
Q Consensus 1142 ~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~~-~l~~lf~~~~~~~~~~l~~~~f~~~~~k~L~~~~~~~~~~ 1220 (1322)
-..+..-++|.++--.|....|+.+++.++..+.+-=+| .+-..|+- +...-....+..+.|+.+..
T Consensus 119 sp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~------------~i~~~~~~~~~~~~~~slSd 186 (1312)
T KOG0803|consen 119 SPFLKSLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDP------------EIFYLVTEILVKETPDSLSD 186 (1312)
T ss_pred hHHHHhhhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhH------------HHHHHHHHHHhccCccccch
Confidence 334445567777788999999999999999999883333 22222221 12122244557777887777
Q ss_pred HHHHHHhhhcCCChhhHHHHHHHHHHhc-ccCchhhhhhccH-H---HHHHHHHHHhccCCChHHHHHHHHHHHHHHHHh
Q 000737 1221 YMGSTIQAFEAPWPIIQANAIYFSSSIL-CLCDDQHILSLFY-T---QVFGLLVVKLSQSADAIVRATCSSSLGWLLKSI 1295 (1322)
Q Consensus 1221 ~l~~~l~ylkS~~~~IR~aA~~fiG~l~-~~l~~~~~~~~~~-e---~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~ 1295 (1322)
.-.-+-.+..+--.++-..+....-.++ +..+.+++..... + ---+.+-. +.+++.|.|+..+-+.+..+.+..
T Consensus 187 ~~~~s~Ee~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk-~~~~k~~~i~~~~~ell~~l~~~i 265 (1312)
T KOG0803|consen 187 LRTLSSEELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWK-LLKSKSPSIKVALLELLLSLIDDI 265 (1312)
T ss_pred hhhcchHHHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHH-HhcCCCcchhHHHHHHHHHHHhhh
Confidence 6666667777777676666666555555 3444444331110 0 01123444 788999999999999988887665
Q ss_pred ccc
Q 000737 1296 NSH 1298 (1322)
Q Consensus 1296 ~~~ 1298 (1322)
..+
T Consensus 266 ~~~ 268 (1312)
T KOG0803|consen 266 LNR 268 (1312)
T ss_pred HHh
Confidence 544
No 140
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.92 E-value=16 Score=42.92 Aligned_cols=138 Identities=20% Similarity=0.234 Sum_probs=89.9
Q ss_pred cccCccchHHHHHHHHHHhhcCCchhchHHH-HHHHHHhhcCCCChhHHhhhhhcccCCCc------hhHhhhHhHHHHH
Q 000737 992 NRQQRFQREAAAAALSEFVRYSGGFDSLLEQ-MVEALCRHVSDESPTVRGLCLRGLVQIPS------IHIHQYATQVLSV 1064 (1322)
Q Consensus 992 ~s~~~~~Ri~a~aflsEll~~~~~~~~ll~~-~~~~L~~~l~D~~~~VR~lalrGLg~l~~------~~v~~~~~~lL~a 1064 (1322)
.+.....|..|.--|-+++.+-.....+..- .+..+...++++++.+|..|.+-+|.... +.+-.+. -++.
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~--~L~~ 170 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELG--ALSK 170 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcc--cHHH
Confidence 3556667777777777777653322222211 23344458999999999999999997754 2332222 4666
Q ss_pred HHhhcccCC-hHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhcccccc--CChhHHHHHHHHHHHHhh
Q 000737 1065 ILALLDDLD-ESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVS--MNVKMRRNAFAAFGALSN 1131 (1322)
Q Consensus 1065 ll~~L~d~d-~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffed--e~~~vR~aAi~lfG~L~~ 1131 (1322)
++..|...+ ..+...|+.+++.++.+-....-.-+..+=..-|++.++. .+..++..|+.+++.+..
T Consensus 171 Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~ 240 (342)
T KOG2160|consen 171 LLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQ 240 (342)
T ss_pred HHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence 777776433 4588999999999987543222111222223445777777 677888999999999998
No 141
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=84.80 E-value=53 Score=43.00 Aligned_cols=255 Identities=13% Similarity=0.126 Sum_probs=152.3
Q ss_pred ccCccchHHHHHHHHHHhhcCCchhchHHHHHHHHHhhcCCCChhHHhhhhhcccCCCc---hhH----hhhHhHHHHHH
Q 000737 993 RQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS---IHI----HQYATQVLSVI 1065 (1322)
Q Consensus 993 s~~~~~Ri~a~aflsEll~~~~~~~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~---~~v----~~~~~~lL~al 1065 (1322)
+..+.-|+.|...|.-+. ++.+.......++..|.+-..+.+..|-.+-...|..+.. +.. ++-.|..+..+
T Consensus 502 ~~~~~~ki~a~~~~~~~~-~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF 580 (1005)
T KOG2274|consen 502 DVPPPVKISAVRAFCGYC-KVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLF 580 (1005)
T ss_pred CCCCchhHHHHHHHHhcc-CceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHH
Confidence 344666777777766655 2333345556688899999999999999999988887642 222 22234444444
Q ss_pred HhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCC----hhHHHHHHHHHHHHhhccCCcchHhH
Q 000737 1066 LALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMN----VKMRRNAFAAFGALSNFGVGSQREAF 1141 (1322)
Q Consensus 1066 l~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~----~~vR~aAi~lfG~L~~~~~~~~~~~~ 1141 (1322)
+..=+ |+.|+-.+-..+.++++.. ...+|+.-.....+-+-++-+. ..+-..|+..+--+.+.+..+...-+
T Consensus 581 ~k~s~--DP~V~~~~qd~f~el~q~~--~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l 656 (1005)
T KOG2274|consen 581 LKYSE--DPQVASLAQDLFEELLQIA--ANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLL 656 (1005)
T ss_pred HHhcC--CchHHHHHHHHHHHHHHHH--HhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHH
Confidence 44433 3456667777777777643 2344544444444444444444 78899999999999998777777888
Q ss_pred HHHHHHhHHHHHHhccCCCh-hHHHHHHHHHHhhcchhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHH
Q 000737 1142 LEQIHAMLPRLILHIYDDDL-SVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDS 1220 (1322)
Q Consensus 1142 ~eqv~~~LvpLLlHL~D~~~-~V~~ack~tL~~~a~~L~~~l~~lf~~~~~~~~~~l~~~~f~~~~~k~L~~~~~~~~~~ 1220 (1322)
..+++..+.-.++|-.|... .-++.|-.+|-. ..+.++.+++ .+.+.+ -|
T Consensus 657 ~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is------~~~eq~~t~~---~e~g~~--------------------~~ 707 (1005)
T KOG2274|consen 657 ICYAFPAVAKITLHSDDHETLQNATECLRALIS------VTLEQLLTWH---DEPGHN--------------------LW 707 (1005)
T ss_pred HHHHhHHhHhheeecCChHHHHhHHHHHHHHHh------cCHHHHHhhc---cCCCcc--------------------HH
Confidence 88988888888899766533 233445444322 2344555443 332322 24
Q ss_pred HHHHHHhhhcCCChhhHHHHHHHHHHhcccCchhhhhhc--cHHHHHHHHHHHhccCCChHHHHH
Q 000737 1221 YMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSL--FYTQVFGLLVVKLSQSADAIVRAT 1283 (1322)
Q Consensus 1221 ~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~~~~~~~~--~~e~l~~~L~~~Ll~Dpdp~VR~~ 1283 (1322)
|+++.+.-+=+|.. -..|+.|+|-++-.+-...-.++ ..+++..+.+.+|++-+.+.|-..
T Consensus 708 yImqV~sqLLdp~~--sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisrmq~ae~lsviQs 770 (1005)
T KOG2274|consen 708 YIMQVLSQLLDPET--SDSAAAFVGPLVLTLITHASSELGPNLDQILRAVISRLQQAETLSVIQS 770 (1005)
T ss_pred HHHHHHHHHcCCcc--chhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHhhhHHHHHH
Confidence 66677776666643 34456699988753322111112 234455555555665555555443
No 142
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.75 E-value=1.3e+02 Score=38.76 Aligned_cols=47 Identities=6% Similarity=0.144 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhhHHHHHHHHHHhc
Q 000737 1202 FVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSIL 1248 (1322)
Q Consensus 1202 f~~~~~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~ 1248 (1322)
++.|....+...+.+-+..+++..+..+.+|.-++|+-+--|+=-++
T Consensus 299 Ivldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLv 345 (948)
T KOG1058|consen 299 IVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLV 345 (948)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhh
Confidence 34455555667777788899999999999999999998887664444
No 143
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=84.35 E-value=3.8 Score=44.21 Aligned_cols=102 Identities=19% Similarity=0.298 Sum_probs=67.7
Q ss_pred cCCCChhHHhhhhhcccCCCc---------h--h------------HhhhHhHHHHHHHhhcccC-ChHHHHHHHHHHHH
Q 000737 1031 VSDESPTVRGLCLRGLVQIPS---------I--H------------IHQYATQVLSVILALLDDL-DESVQLTAVSCLLT 1086 (1322)
Q Consensus 1031 l~D~~~~VR~lalrGLg~l~~---------~--~------------v~~~~~~lL~all~~L~d~-d~~V~leam~~L~~ 1086 (1322)
++||++.||..|+..|..+-+ + + ...-..++=.+++..|+.. +..+....+.+|+-
T Consensus 49 l~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~ 128 (182)
T PF13251_consen 49 LKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAV 128 (182)
T ss_pred HcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 578888888887777765521 0 0 0001112223344455543 45677788888888
Q ss_pred HhccCCcccc-hhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhc
Q 000737 1087 ILKSSSKDAV-EPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNF 1132 (1322)
Q Consensus 1087 ll~~l~~~~~-~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~ 1132 (1322)
++..-.-..+ ..++..+...++++..+-+.+||.+|...+|.+...
T Consensus 129 Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 129 LVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 8754332222 256778888899999999999999999999999873
No 144
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.59 E-value=29 Score=40.14 Aligned_cols=83 Identities=10% Similarity=0.063 Sum_probs=50.9
Q ss_pred HHHHHHHhhhcCCChhhHHHHHHHHHHhcccCc-------------------------hhhhhhccHHHHHHHHHHHh--
Q 000737 1220 SYMGSTIQAFEAPWPIIQANAIYFSSSILCLCD-------------------------DQHILSLFYTQVFGLLVVKL-- 1272 (1322)
Q Consensus 1220 ~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~-------------------------~~~~~~~~~e~l~~~L~~~L-- 1272 (1322)
.+..|-+--|+++...+|+.-+ +|.+.+... +++...-|.+-+-.-|+- |
T Consensus 174 ~~p~~kll~ft~~~s~vRr~Gv--agtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~~LP~eLQy-Lp~ 250 (353)
T KOG2973|consen 174 RFPDQKLLPFTSEDSQVRRGGV--AGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDMAKLPVELQY-LPE 250 (353)
T ss_pred hhhHhhhhcccccchhhhccch--HHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHHhcCCHhhhc-CCc
Confidence 4566667777888888999765 455543111 111111112222223432 2
Q ss_pred --ccCCChHHHHHHHHHHHHHH--HHhcccccccccc
Q 000737 1273 --SQSADAIVRATCSSSLGWLL--KSINSHSWRSTRL 1305 (1322)
Q Consensus 1273 --l~Dpdp~VR~~Aa~aL~~l~--k~~~~~~~~~~~~ 1305 (1322)
.+||||.||+.-.+|+..|. +..+...|+..-+
T Consensus 251 dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvY 287 (353)
T KOG2973|consen 251 DKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVY 287 (353)
T ss_pred cccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCch
Confidence 36999999999999999988 6666677766544
No 145
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.42 E-value=33 Score=45.23 Aligned_cols=136 Identities=21% Similarity=0.213 Sum_probs=77.3
Q ss_pred HHHHHHhhcccccCCCCChhHHHHHHHHhhhccc------cCCCCcccHHHHHHHHHHHHHHHHhhcCCCCCCcHHHHHH
Q 000737 495 ALALSACTTLVTVEPKLTIETRNHVMKATLGFFA------LPNDPIDVVNPLIDNLITLLCAILLTSGEDGRSRADQLLH 568 (1322)
Q Consensus 495 ~~am~a~~~L~~l~P~L~~e~~~~ll~~c~~v~~------lp~~~~~l~~~~~~aL~~lL~~ll~~~~~d~~~~~~~L~~ 568 (1322)
..|+..+..+++=+- .|.-..+|+.|..+|+ .|..+.-.-.-.+..+..+-..|..+++ -.+++..
T Consensus 390 ~Aa~~~l~~~~~KR~---ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~-----~~~~mE~ 461 (1010)
T KOG1991|consen 390 TAALDFLTTLVSKRG---KETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSP-----YKSQMEY 461 (1010)
T ss_pred HHHHHHHHHHHHhcc---hhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCc-----hHHHHHH
Confidence 455555555554332 2333455555555554 3322222233445566666633444443 2466644
Q ss_pred -HHHHHHHHhcChhHHHhhHHHHHHHHHHHHHHhhhhcccccCCCCCCccchhhhhhhhhccCCCCCCcccCCchhhhhh
Q 000737 569 -ILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCL 647 (1322)
Q Consensus 569 -il~~l~pwl~S~~~~eR~RA~~~~~~lL~~f~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ps~f~~~~~~f~~l 647 (1322)
+..|.-|-++|+-.|-|.|||..+. +|.+ .+|. + |+ . -.
T Consensus 462 flv~hVfP~f~s~~g~Lrarac~vl~----~~~~------------~df~--------------d-~~-------~--l~ 501 (1010)
T KOG1991|consen 462 FLVNHVFPEFQSPYGYLRARACWVLS----QFSS------------IDFK--------------D-PN-------N--LS 501 (1010)
T ss_pred HHHHHhhHhhcCchhHHHHHHHHHHH----HHHh------------ccCC--------------C-hH-------H--HH
Confidence 4589999999999999999998765 2421 1111 1 10 0 01
Q ss_pred hhHHHHhhccccCCChhHHHHHHHHHHHHHH
Q 000737 648 GNRVIMYLPRCADTDSEVRKISAQILDQLFS 678 (1322)
Q Consensus 648 G~Lvg~l~prC~D~~~~ir~~A~~~i~~Ll~ 678 (1322)
--+=+-....|.|++-.||-+|+.|+..+..
T Consensus 502 ~ale~t~~~l~~d~~lPV~VeAalALq~fI~ 532 (1010)
T KOG1991|consen 502 EALELTHNCLLNDNELPVRVEAALALQSFIS 532 (1010)
T ss_pred HHHHHHHHHhccCCcCchhhHHHHHHHHHHh
Confidence 1112234456679999999999999998864
No 146
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=83.05 E-value=7.5 Score=47.61 Aligned_cols=133 Identities=13% Similarity=0.154 Sum_probs=77.8
Q ss_pred hccc-cccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHHhccCC-ChhHHHHHHHHHHhhcchhhhhhhh
Q 000737 1107 LRNL-QVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDD-DLSVRQACRNTLKQVAPFMEIGVYG 1184 (1322)
Q Consensus 1107 lrpf-fede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~-~~~V~~ack~tL~~~a~~L~~~l~~ 1184 (1322)
+.+. ..|.+++||.+|+-++|=++= +.. ..+|.-+--|.|. |+-||-....+|+..+.
T Consensus 556 lLh~avsD~nDDVrRAAViAlGfvc~--~D~----------~~lv~tvelLs~shN~hVR~g~AvaLGiaca-------- 615 (926)
T COG5116 556 LLHYAVSDGNDDVRRAAVIALGFVCC--DDR----------DLLVGTVELLSESHNFHVRAGVAVALGIACA-------- 615 (926)
T ss_pred hheeecccCchHHHHHHHHheeeeEe--cCc----------chhhHHHHHhhhccchhhhhhhHHHhhhhhc--------
Confidence 3344 689999999999999998763 111 2344444444454 88899999999987442
Q ss_pred hhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhhHHHHHHHHHHhcccCchhhhhhccHHHH
Q 000737 1185 IFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQV 1264 (1322)
Q Consensus 1185 lf~~~~~~~~~~l~~~~f~~~~~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l 1264 (1322)
+.| .....++... ..+++...+|++|++-.|.++-...++.-. .+..+
T Consensus 616 -------g~G-----~~~a~diL~~------------------L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp--~v~~I 663 (926)
T COG5116 616 -------GTG-----DKVATDILEA------------------LMYDTNDFVRQSAMIAVGMILMQCNPELNP--NVKRI 663 (926)
T ss_pred -------CCc-----cHHHHHHHHH------------------HhhCcHHHHHHHHHHHHHHHHhhcCcccCh--hHHHH
Confidence 223 1122233332 346788889999999999887443333321 12333
Q ss_pred HHHHHHHh-ccCCChHHHHHHHHHHHHH
Q 000737 1265 FGLLVVKL-SQSADAIVRATCSSSLGWL 1291 (1322)
Q Consensus 1265 ~~~L~~~L-l~Dpdp~VR~~Aa~aL~~l 1291 (1322)
.+.+.... -+.++-.+.-.|.-|-|.+
T Consensus 664 ~k~f~~vI~~Khe~glaklGA~laqGi~ 691 (926)
T COG5116 664 IKKFNRVIVDKHESGLAKLGAVLAQGIS 691 (926)
T ss_pred HHHHHHHHhhhhHhHHHHHHHHHHhhhh
Confidence 33333311 2234555555555555544
No 147
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=82.80 E-value=1.7e+02 Score=38.42 Aligned_cols=138 Identities=22% Similarity=0.268 Sum_probs=85.8
Q ss_pred CChhHHhhhhhcccCCCc--hhHhhhH--hHHHHHHHhhcccC--ChHHHHHHHHHHHHHhccCCcccchhhHH--hHHH
Q 000737 1034 ESPTVRGLCLRGLVQIPS--IHIHQYA--TQVLSVILALLDDL--DESVQLTAVSCLLTILKSSSKDAVEPILL--NLSV 1105 (1322)
Q Consensus 1034 ~~~~VR~lalrGLg~l~~--~~v~~~~--~~lL~all~~L~d~--d~~V~leam~~L~~ll~~l~~~~~~~~l~--~l~~ 1105 (1322)
.++..-.-++=-|+|+.. .+..+.. ..++|-+.+.|... ++++++|++..++.+... ......+. .+..
T Consensus 503 ~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d---~~~A~lL~~sgli~ 579 (708)
T PF05804_consen 503 DSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASD---PECAPLLAKSGLIP 579 (708)
T ss_pred CcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCC---HHHHHHHHhCChHH
Confidence 355555556666677763 1222211 25788888888764 467999999999987642 12222221 2333
Q ss_pred Hhccccc--cCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHHhccCCChhHHHHHHHHHHhhcch
Q 000737 1106 RLRNLQV--SMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPF 1177 (1322)
Q Consensus 1106 ~lrpffe--de~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~ 1177 (1322)
.+-.+|. .|++++=.--...|+.+... +.-++.+..+. +..--|+-.++|.|+.||+.|-.+|-.++.+
T Consensus 580 ~Li~LL~~kqeDdE~VlQil~~f~~ll~h--~~tr~~ll~~~-~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~ 650 (708)
T PF05804_consen 580 TLIELLNAKQEDDEIVLQILYVFYQLLFH--EETREVLLKET-EIPAYLIDLMHDKNAEIRKVCDNALDIIAEY 650 (708)
T ss_pred HHHHHHHhhCchHHHHHHHHHHHHHHHcC--hHHHHHHHhcc-chHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 3333333 24577777788889999874 33344444442 3444555589999999999999999888754
No 148
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=82.40 E-value=8.9 Score=48.05 Aligned_cols=142 Identities=15% Similarity=0.185 Sum_probs=89.9
Q ss_pred ChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHHhccCCChhHHHHHHHHHHhhcchhhh-hhhhhhccccCCC
Q 000737 1115 NVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNSHCFNS 1193 (1322)
Q Consensus 1115 ~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~~-~l~~lf~~~~~~~ 1193 (1322)
+..+++||--.|-.+++....-.-.+=...|.+-||+++ .|++..|-.++-.|++.+. ++. .++.-
T Consensus 390 d~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll---~dp~~~i~~~~lgai~NlV--mefs~~ksk-------- 456 (678)
T KOG1293|consen 390 DHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLL---MDPEIMIMGITLGAICNLV--MEFSNLKSK-------- 456 (678)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHh---hCcchhHHHHHHHHHHHHH--hhcccHHHH--------
Confidence 356788888888887763211000111246777888877 7898888887766665533 111 11111
Q ss_pred CCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhhHHHHHHHHHHhcccCchhhhhhccHHHHHHHHHHHhc
Q 000737 1194 DHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLS 1273 (1322)
Q Consensus 1194 ~~~l~~~~f~~~~~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll 1273 (1322)
|+ .+-++.+...|+.+|.+..|+.+.|++-.+.=+-+..+..+.+...-.+-+.. +-
T Consensus 457 --------fl--------------~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~-l~ 513 (678)
T KOG1293|consen 457 --------FL--------------RNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILD-LI 513 (678)
T ss_pred --------HH--------------HcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHH-HH
Confidence 11 11245667889999999999999999987764444444333333333334445 77
Q ss_pred cCCChHHHHHHHHHHHHHH
Q 000737 1274 QSADAIVRATCSSSLGWLL 1292 (1322)
Q Consensus 1274 ~Dpdp~VR~~Aa~aL~~l~ 1292 (1322)
.|||+.|+..+-+-|-.|.
T Consensus 514 nd~d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 514 NDPDWAVQEQCFQLLRNLT 532 (678)
T ss_pred hCCCHHHHHHHHHHHHHhh
Confidence 8999999998888776664
No 149
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=82.35 E-value=7.1 Score=41.46 Aligned_cols=133 Identities=20% Similarity=0.185 Sum_probs=101.2
Q ss_pred chHHHHHHHHHhhcCCCChhHHhhhhhcccCCCc----hhHhhhHhHHHHHHHhhcccCCh-HHHHHHHHHHHHHhccCC
Q 000737 1018 SLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS----IHIHQYATQVLSVILALLDDLDE-SVQLTAVSCLLTILKSSS 1092 (1322)
Q Consensus 1018 ~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~----~~v~~~~~~lL~all~~L~d~d~-~V~leam~~L~~ll~~l~ 1092 (1322)
..++..+..+.+.++++++.-|..++.=++-+.. +-...+..+-+..+++-|++.++ .+...++.+|++|+..+.
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4556678888889999999999988776665433 33445667789999999998775 477788999999986554
Q ss_pred c------ccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHH
Q 000737 1093 K------DAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLI 1153 (1322)
Q Consensus 1093 ~------~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLL 1153 (1322)
. +..-|.+..+...+-.+.++ ..+...+..++..+...- -....||..++...+.+++
T Consensus 101 ~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~-ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 101 GKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHH-PTTFRPFANKIESALLSLL 164 (165)
T ss_pred CCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHC-CccccchHHHHHHHHHHHh
Confidence 3 33456677777777777766 778899999999999832 3457889999999988875
No 150
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=80.86 E-value=6.2 Score=42.46 Aligned_cols=112 Identities=13% Similarity=0.128 Sum_probs=76.7
Q ss_pred HHHHHHHHhhcCCCChhHHhhhhhcccCC----CchhHhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHH---hccCCc
Q 000737 1021 EQMVEALCRHVSDESPTVRGLCLRGLVQI----PSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTI---LKSSSK 1093 (1322)
Q Consensus 1021 ~~~~~~L~~~l~D~~~~VR~lalrGLg~l----~~~~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~l---l~~l~~ 1093 (1322)
+..+..+.+++...+.=-|-+|.+|.-.+ +.+++-...++++..+-.+|...|.+|...++.+|..+ .+..+
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG- 115 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG- 115 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh-
Confidence 44566677777776666677777776655 33667777889999999999999999999999999999 44443
Q ss_pred ccchhhHHhHHHHhccccccC-----------ChhHHHHHHHHHHHHhhcc
Q 000737 1094 DAVEPILLNLSVRLRNLQVSM-----------NVKMRRNAFAAFGALSNFG 1133 (1322)
Q Consensus 1094 ~~~~~~l~~l~~~lrpffede-----------~~~vR~aAi~lfG~L~~~~ 1133 (1322)
+.+.|++-+|...+.-|.++- +..++..--..+..+-+.|
T Consensus 116 ~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~G 166 (183)
T PF10274_consen 116 EALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNG 166 (183)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhc
Confidence 457788888776666544432 2344444444555554433
No 151
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=80.56 E-value=56 Score=38.37 Aligned_cols=161 Identities=16% Similarity=0.091 Sum_probs=84.5
Q ss_pred HHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccch---hhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccCCcc
Q 000737 1061 VLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVE---PILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQ 1137 (1322)
Q Consensus 1061 lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~---~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~ 1137 (1322)
....++..++..|..+...|+..|+.++..-+..... ..+..+..-++......+.++...|+.+++.+.+. ...
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~--~~~ 183 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS--KEY 183 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS--HHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc--chh
Confidence 4566677777778889999999999999876655554 45666666666666677788899999999999972 233
Q ss_pred hHhHHH-HHHHhHHHHHHhcc-CCChhHHHHHHHHHHhhcchhhh--hhhhhhccccCCCCCCCChHHHHHHHHHHHHHh
Q 000737 1138 REAFLE-QIHAMLPRLILHIY-DDDLSVRQACRNTLKQVAPFMEI--GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQH 1213 (1322)
Q Consensus 1138 ~~~~~e-qv~~~LvpLLlHL~-D~~~~V~~ack~tL~~~a~~L~~--~l~~lf~~~~~~~~~~l~~~~f~~~~~k~L~~~ 1213 (1322)
+..|.+ ...+.+++++.-.. ..+....+ ..+-..-|-=+|-- ...+-+.++ . ++..++..+...
T Consensus 184 R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Q-l~Y~~ll~lWlLSF~~~~~~~~~~~----------~-~i~~L~~i~~~~ 251 (312)
T PF03224_consen 184 RQVFWKSNGVSPLFDILRKQATNSNSSGIQ-LQYQALLCLWLLSFEPEIAEELNKK----------Y-LIPLLADILKDS 251 (312)
T ss_dssp HHHHHTHHHHHHHHHHHH---------HHH-HHHHHHHHHHHHTTSHHHHHHHHTT----------S-HHHHHHHHHHH-
T ss_pred HHHHHhcCcHHHHHHHHHhhcccCCCCchh-HHHHHHHHHHHHhcCHHHHHHHhcc----------c-hHHHHHHHHHhc
Confidence 344433 34444444332001 12222222 22222222211111 111112111 1 667788888888
Q ss_pred CcchHHHH-HHHHHhhhcCCChh
Q 000737 1214 FPSRIDSY-MGSTIQAFEAPWPI 1235 (1322)
Q Consensus 1214 ~~~~~~~~-l~~~l~ylkS~~~~ 1235 (1322)
-.+++-.. +....+.+..+...
T Consensus 252 ~KEKvvRv~la~l~Nl~~~~~~~ 274 (312)
T PF03224_consen 252 IKEKVVRVSLAILRNLLSKAPKS 274 (312)
T ss_dssp -SHHHHHHHHHHHHHTTSSSSTT
T ss_pred ccchHHHHHHHHHHHHHhccHHH
Confidence 88888886 44444577766655
No 152
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=80.30 E-value=12 Score=43.36 Aligned_cols=190 Identities=19% Similarity=0.205 Sum_probs=102.9
Q ss_pred HHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHh--HHHHhccccccCCh--hHHHHHHHHHHHHhhccCCc
Q 000737 1061 VLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLN--LSVRLRNLQVSMNV--KMRRNAFAAFGALSNFGVGS 1136 (1322)
Q Consensus 1061 lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~--l~~~lrpffede~~--~vR~aAi~lfG~L~~~~~~~ 1136 (1322)
.+|.++..|.+.+.+|.-.|+.+|++|-.- ..+.+.+.++ ....+..+|..... .+=..|-=.+..|++ |+
T Consensus 158 AVPlfiqlL~s~~~~V~eQavWALGNiAGD--S~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcR---Gk 232 (526)
T COG5064 158 AVPLFIQLLSSTEDDVREQAVWALGNIAGD--SEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCR---GK 232 (526)
T ss_pred chHHHHHHHcCchHHHHHHHHHHhccccCC--chhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhC---CC
Confidence 478889999999999999999999999752 2333333221 11222233443333 222334444555554 66
Q ss_pred chHhHHHHHHHhHHHHHHhccCCChhHHHHHHHHHHhhcchhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcc
Q 000737 1137 QREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPS 1216 (1322)
Q Consensus 1137 ~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~~~l~~lf~~~~~~~~~~l~~~~f~~~~~k~L~~~~~~ 1216 (1322)
...|=-.-+-++++-|---+.-.+++|..-+..|+.-+. +|. ...+-..+-.-.|.
T Consensus 233 nP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYls-----------------Dg~-------~E~i~avld~g~~~ 288 (526)
T COG5064 233 NPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLS-----------------DGP-------NEKIQAVLDVGIPG 288 (526)
T ss_pred CCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhc-----------------cCc-------HHHHHHHHhcCCcH
Confidence 555544444444444333344456666555555554422 220 01111122222333
Q ss_pred hHHHHHHHHHhhhcCCChhhHHHHHHHHHHhcccCchhhhhhccHHHHHHHHHHHhccCCChHHHHHHHHHH
Q 000737 1217 RIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSL 1288 (1322)
Q Consensus 1217 ~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL 1288 (1322)
+ .+..+.+|...|..-|...+|-++-.-+++----++ -...++|.. |+..|-..+|.-|-=|+
T Consensus 289 R-------LvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~-~G~L~a~~~-lLs~~ke~irKEaCWTi 351 (526)
T COG5064 289 R-------LVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIIN-CGALKAFRS-LLSSPKENIRKEACWTI 351 (526)
T ss_pred H-------HHHHhcCccccccCHHHHhhcCeeecCccceehhee-cccHHHHHH-HhcChhhhhhhhhheee
Confidence 3 344555677788888888889887554433221122 124567777 78888888888665444
No 153
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.99 E-value=1.9e+02 Score=37.19 Aligned_cols=259 Identities=16% Similarity=0.165 Sum_probs=141.1
Q ss_pred ccchHHHHHHHHHHhhcCCc---hhchHHHHHHHHHhhcCCCChhHHhhhhhcccCCCchhHhhhHhHHHHHHHhhcccC
Q 000737 996 RFQREAAAAALSEFVRYSGG---FDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDL 1072 (1322)
Q Consensus 996 ~~~Ri~a~aflsEll~~~~~---~~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~~~v~~~~~~lL~all~~L~d~ 1072 (1322)
+--|.-|+..|-.+.++.++ ...+.+.++.. |+|.+..|--.+ ..++.++..--.+.
T Consensus 162 ~~vkqkaALclL~L~r~spDl~~~~~W~~riv~L----L~D~~~gv~ta~----------------~sLi~~lvk~~p~~ 221 (938)
T KOG1077|consen 162 DYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHL----LDDQHMGVVTAA----------------TSLIEALVKKNPES 221 (938)
T ss_pred HHHHHHHHHHHHHHHhcCccccChhhHHHHHHHH----hCccccceeeeh----------------HHHHHHHHHcCCHH
Confidence 34455566666666776555 23555555544 477664433222 23455555543332
Q ss_pred ChHHHHHHHHHHHHHhccCCcc--cc------hhh-HHhHHHHhccccccCChhHHHHHHHHHHHHhhccCC--cchHhH
Q 000737 1073 DESVQLTAVSCLLTILKSSSKD--AV------EPI-LLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVG--SQREAF 1141 (1322)
Q Consensus 1073 d~~V~leam~~L~~ll~~l~~~--~~------~~~-l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~--~~~~~~ 1141 (1322)
-...+.-|+.-|+++....+-. +. .|- .++++--|.-+=.-+++..|+.-++.+-.+.+.... +.+++.
T Consensus 222 yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq 301 (938)
T KOG1077|consen 222 YKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQ 301 (938)
T ss_pred HhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchH
Confidence 2345566677777776443221 10 122 233333333333456688999999999998873221 222332
Q ss_pred H----HHHHHhHHHHHHhccCCChhHHHHHHHHHHhhcchhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhC-cc
Q 000737 1142 L----EQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHF-PS 1216 (1322)
Q Consensus 1142 ~----eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~~~l~~lf~~~~~~~~~~l~~~~f~~~~~k~L~~~~-~~ 1216 (1322)
. +-|+=..+.|..|+ |++++.-..|...||..-. .+ +-++.|-. +..+|+....++ .+
T Consensus 302 ~~na~naVLFeaI~l~~h~-D~e~~ll~~~~~~Lg~fls-----------~r----E~NiRYLa-LEsm~~L~ss~~s~d 364 (938)
T KOG1077|consen 302 HSNAKNAVLFEAISLAIHL-DSEPELLSRAVNQLGQFLS-----------HR----ETNIRYLA-LESMCKLASSEFSID 364 (938)
T ss_pred hhhhHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHhh-----------cc----cccchhhh-HHHHHHHHhccchHH
Confidence 2 23444558888997 6667766666666665321 11 12355542 356677666655 45
Q ss_pred hHHHHHHHHHhhhc-CCChhhHHHHHHHHHHhcccCchhhhhhccHHHHHHHHHHHhccCCChHHHHHHHHHHHHH-HHH
Q 000737 1217 RIDSYMGSTIQAFE-APWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWL-LKS 1294 (1322)
Q Consensus 1217 ~~~~~l~~~l~ylk-S~~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l-~k~ 1294 (1322)
.+-.+..+.+.-+| .+...||+-|+-++=.+ + +.+ ...++...|... +.--|+.+|.--+--...| -|+
T Consensus 365 avK~h~d~Ii~sLkterDvSirrravDLLY~m-c--D~~-----Nak~IV~elLqY-L~tAd~sireeivlKvAILaEKy 435 (938)
T KOG1077|consen 365 AVKKHQDTIINSLKTERDVSIRRRAVDLLYAM-C--DVS-----NAKQIVAELLQY-LETADYSIREEIVLKVAILAEKY 435 (938)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHHHH-h--chh-----hHHHHHHHHHHH-HhhcchHHHHHHHHHHHHHHHHh
Confidence 66667778888899 88899999998554332 1 111 134444444443 3337788776433333333 366
Q ss_pred hccccc
Q 000737 1295 INSHSW 1300 (1322)
Q Consensus 1295 ~~~~~~ 1300 (1322)
.-..+|
T Consensus 436 AtDy~W 441 (938)
T KOG1077|consen 436 ATDYSW 441 (938)
T ss_pred cCCcch
Confidence 666666
No 154
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=79.80 E-value=1.4e+02 Score=35.57 Aligned_cols=179 Identities=9% Similarity=0.173 Sum_probs=102.6
Q ss_pred ccccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHh---HHHHHHhccCCChhHHHHHHHHHHhhcchhh---hhh-
Q 000737 1110 LQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAM---LPRLILHIYDDDLSVRQACRNTLKQVAPFME---IGV- 1182 (1322)
Q Consensus 1110 ffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~---LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~---~~l- 1182 (1322)
.+..=+.+.|..+..+|+.+.+...+....|..+-+.+. +...|+.--+ +++++--|..-|+.|...=. .-+
T Consensus 84 ~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~-~~dial~~g~mlRec~k~e~l~~~iL~ 162 (335)
T PF08569_consen 84 NLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE-NPDIALNCGDMLRECIKHESLAKIILY 162 (335)
T ss_dssp TGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG-STTTHHHHHHHHHHHTTSHHHHHHHHT
T ss_pred HhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc-CccccchHHHHHHHHHhhHHHHHHHhC
Confidence 444556789999999999999965554443556655544 3333333223 77888899999999885421 111
Q ss_pred hhhhccccCCCCCCCChHHHHH---HHHHHHHHhCcc--------hHHHHHHHHHhhhcCCChhhHHHHHHHHHHhcccC
Q 000737 1183 YGIFNSHCFNSDHRSDYETFVR---DLTRQFVQHFPS--------RIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLC 1251 (1322)
Q Consensus 1183 ~~lf~~~~~~~~~~l~~~~f~~---~~~k~L~~~~~~--------~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l 1251 (1322)
.+.|.+. ++--+..+|+. .. .+.+-+...+++ .+++|+..-...+.|+.--.|+-+..++|.++-.-
T Consensus 163 ~~~f~~f-f~~~~~~~Fdi-asdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr 240 (335)
T PF08569_consen 163 SECFWKF-FKYVQLPNFDI-ASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDR 240 (335)
T ss_dssp SGGGGGH-HHHTTSSSHHH-HHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSG
T ss_pred cHHHHHH-HHHhcCCccHh-HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHch
Confidence 2222221 00011122321 11 223333334443 44555555667889999999999999999998432
Q ss_pred chhh--hhhccHHHHHHHHHHHhccCCChHHHHHHHHHHHHHH
Q 000737 1252 DDQH--ILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1292 (1322)
Q Consensus 1252 ~~~~--~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1292 (1322)
..-. ...++...-...+.. |++|+...||--|---...+.
T Consensus 241 ~n~~vm~~yi~~~~nLkl~M~-lL~d~sk~Iq~eAFhvFKvFV 282 (335)
T PF08569_consen 241 SNFNVMTRYISSPENLKLMMN-LLRDKSKNIQFEAFHVFKVFV 282 (335)
T ss_dssp GGHHHHHHHTT-HHHHHHHHH-HTT-S-HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHCCHHHHHHHHH-HhcCcchhhhHHHHHHHHHHH
Confidence 2211 234555555666666 899999999998877766665
No 155
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=79.69 E-value=67 Score=36.89 Aligned_cols=228 Identities=15% Similarity=0.181 Sum_probs=123.3
Q ss_pred HHHhhcCCCChhHHhhhhhcccCCCc----hhHh-hhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhH
Q 000737 1026 ALCRHVSDESPTVRGLCLRGLVQIPS----IHIH-QYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPIL 1100 (1322)
Q Consensus 1026 ~L~~~l~D~~~~VR~lalrGLg~l~~----~~v~-~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l 1100 (1322)
.|...+.++++.+|.-|++-|+++.. +..+ +....++.-+.+-|+ |...+..++.|+..+...- . ......
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~--D~~~~~~~l~gl~~L~~~~-~-~~~~~~ 78 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLD--DHACVQPALKGLLALVKMK-N-FSPESA 78 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhc--cHhhHHHHHHHHHHHHhCc-C-CChhhH
Confidence 45677899999999999888886542 2222 233445555666664 5567777788888887332 1 111122
Q ss_pred HhHHHHhccccccC-----ChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHHhccCCChhHH------HHHHH
Q 000737 1101 LNLSVRLRNLQVSM-----NVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVR------QACRN 1169 (1322)
Q Consensus 1101 ~~l~~~lrpffede-----~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~------~ack~ 1169 (1322)
..++ +.+|++. ....|...+.++..+... ....+ ...-...+.-++|+-|.+.+=| +-.+.
T Consensus 79 ~~i~---~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~----~~~~l-~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~ 150 (262)
T PF14500_consen 79 VKIL---RSLFQNVDVQSLPQSTRYAVYQLLDSLLEN----HREAL-QSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKV 150 (262)
T ss_pred HHHH---HHHHHhCChhhhhHHHHHHHHHHHHHHHHH----hHHHH-HhchhHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 2332 2334333 356899999999998862 11111 2222233444444444433322 11111
Q ss_pred HHHhhcchhhhhhhhhhccc----------cCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhhHHH
Q 000737 1170 TLKQVAPFMEIGVYGIFNSH----------CFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQAN 1239 (1322)
Q Consensus 1170 tL~~~a~~L~~~l~~lf~~~----------~~~~~~~l~~~~f~~~~~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~a 1239 (1322)
-+.... + +-...++|.-- .-++.-+.+-++--..+-.+|. ..|......+-..+.=+.|+.+.+|.-
T Consensus 151 i~~~~~-~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~-s~~~fa~~~~p~LleKL~s~~~~~K~D 227 (262)
T PF14500_consen 151 ILQEFD-I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS-STPLFAPFAFPLLLEKLDSTSPSVKLD 227 (262)
T ss_pred HHHhcc-c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc-CcHhhHHHHHHHHHHHHcCCCcHHHHH
Confidence 111111 1 11334444421 1011113444555444455554 445566677777888899999999999
Q ss_pred HHHHHHHhcccCchhhhhhccHHHHHHHHH
Q 000737 1240 AIYFSSSILCLCDDQHILSLFYTQVFGLLV 1269 (1322)
Q Consensus 1240 A~~fiG~l~~~l~~~~~~~~~~e~l~~~L~ 1269 (1322)
+...+...+..++.+.+ ......+.++|.
T Consensus 228 ~L~tL~~c~~~y~~~~~-~~~~~~iw~~lk 256 (262)
T PF14500_consen 228 SLQTLKACIENYGADSL-SPHWSTIWNALK 256 (262)
T ss_pred HHHHHHHHHHHCCHHHH-HHHHHHHHHHHH
Confidence 99888888776664433 122344555543
No 156
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=79.60 E-value=8.3 Score=48.30 Aligned_cols=128 Identities=16% Similarity=0.076 Sum_probs=94.7
Q ss_pred HHhHHHHHHHHhhhCChhHHHHHHHHHhhhcccCccchHHHHHHHHHHhhcCCch-------hchHHHHHHHHHhhcCCC
Q 000737 962 INLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGF-------DSLLEQMVEALCRHVSDE 1034 (1322)
Q Consensus 962 ~~GV~lLar~l~~~~~~~~~~il~~l~~~l~s~~~~~Ri~a~aflsEll~~~~~~-------~~ll~~~~~~L~~~l~D~ 1034 (1322)
+..|.+-..-+++-.|..+-+=++++...|.|..-.-|-.-+-+++.++.+.... ...+..++..|.+++.|.
T Consensus 279 pk~islFl~kls~l~p~i~lrq~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~ 358 (1128)
T COG5098 279 PKDISLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDT 358 (1128)
T ss_pred hHHHHHHHHHHhhcCchHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhcc
Confidence 3445555555566566667777888999999999888877776666655542111 123455889999999999
Q ss_pred ChhHHhhhhhcccCCCc--hhHhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhc
Q 000737 1035 SPTVRGLCLRGLVQIPS--IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILK 1089 (1322)
Q Consensus 1035 ~~~VR~lalrGLg~l~~--~~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~ 1089 (1322)
+|-+|--|++|+..+-. .+-.+-+..+..-....|+|...-|+..|+.-++++|-
T Consensus 359 ~py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 359 YPYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred chHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 99999999999997754 23333345577778888999888899999999999984
No 157
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.52 E-value=17 Score=45.83 Aligned_cols=192 Identities=18% Similarity=0.188 Sum_probs=121.6
Q ss_pred HHHHHHhhcCCCChhHHhhhhhcccCCCc--------hhHhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcc
Q 000737 1023 MVEALCRHVSDESPTVRGLCLRGLVQIPS--------IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKD 1094 (1322)
Q Consensus 1023 ~~~~L~~~l~D~~~~VR~lalrGLg~l~~--------~~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~ 1094 (1322)
.=+.|-++|+-+|..||.-|+.=+-+.-+ +++....+..-.-+++.|.|.-+.|+-+|..++.++...- |.
T Consensus 175 ~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~f-We 253 (1005)
T KOG1949|consen 175 YKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKF-WE 253 (1005)
T ss_pred HhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH-HH
Confidence 34567789999999999998877776532 2333334444667888899888999999999999998543 22
Q ss_pred cc-hhhHHhHHHHhccccc-cCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHHhccCCChhHHHHHHHHHH
Q 000737 1095 AV-EPILLNLSVRLRNLQV-SMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLK 1172 (1322)
Q Consensus 1095 ~~-~~~l~~l~~~lrpffe-de~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~ 1172 (1322)
-+ ..++..+...|..-.. |...+||.+-|.-+-.++. -+...+.++|++..+-|. |+|....||-|.-+-|-
T Consensus 254 ~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~---np~sh~~le~~Lpal~~~---l~D~se~VRvA~vd~ll 327 (1005)
T KOG1949|consen 254 MIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILD---NPLSHPLLEQLLPALRYS---LHDNSEKVRVAFVDMLL 327 (1005)
T ss_pred HcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHc---CccchhHHHHHHHhcchh---hhccchhHHHHHHHHHH
Confidence 21 2344444444432222 3446899999998888876 456788899988776665 45888899987776664
Q ss_pred hh-----cchhhh-hhhhhhccccCCCC---CC------------CChHHHHHHHHHHHHHhCcchHHHH
Q 000737 1173 QV-----APFMEI-GVYGIFNSHCFNSD---HR------------SDYETFVRDLTRQFVQHFPSRIDSY 1221 (1322)
Q Consensus 1173 ~~-----a~~L~~-~l~~lf~~~~~~~~---~~------------l~~~~f~~~~~k~L~~~~~~~~~~~ 1221 (1322)
++ +.+... .+..++.+.+...- ++ ..-++.+..-|.+|++.++-....|
T Consensus 328 ~ik~vra~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~lP~~k~ee~~c~Rc~tlv~~n~~A~~rf 397 (1005)
T KOG1949|consen 328 KIKAVRAAKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSFLPVNKPEEVWCERCVTLVQMNHAAARRF 397 (1005)
T ss_pred HHHhhhhhhhhccccHHHHHHHHhccccHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCHHHHHHH
Confidence 33 333333 44444433221111 00 0014566667777777776554444
No 158
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=79.16 E-value=1.4e+02 Score=41.30 Aligned_cols=218 Identities=15% Similarity=0.104 Sum_probs=128.6
Q ss_pred hHHH-HHHHHHHHHHhcCCcchHHHHHHhhHHHHHHHHHHhhhhccCCCC---------------------CC------C
Q 000737 872 DILQ-AAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASS---------------------GQ------H 923 (1322)
Q Consensus 872 ~~~l-aA~~aL~Ell~~~~~~~~~~v~~~fp~Lf~aLL~ql~~~~~l~~~---------------------~~------~ 923 (1322)
.-++ ||+|+|-.+=+.. |++.++.++=.==-++=|+|+-|-++-..+ |+ +
T Consensus 312 ~H~lcaA~~~lMK~SFDE--EhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~L 389 (2195)
T KOG2122|consen 312 EHQLCAALCTLMKLSFDE--EHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATL 389 (2195)
T ss_pred chhhHHHHHHHHHhhccH--HHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhh
Confidence 4456 9999988776654 888887554211112223444433332111 11 1
Q ss_pred ChHHHHHHHHHHHHHHh--CcHHHHHHHHhcCCCC----chhhHHHhH--HHHHHHHhhhCC-hhHHHHHHHHHhhhccc
Q 000737 924 EPLRAILTSFQAFCECV--GDLEMRKILARDGEQN----DKEKWINLI--GDVAGCVSIKRP-KEVQTICLILTKSINRQ 994 (1322)
Q Consensus 924 ~P~~~aleAlk~ll~~~--g~~~~~~~Le~~~~w~----~~~~~~~GV--~lLar~l~~~~~-~~~~~il~~l~~~l~s~ 994 (1322)
-..+.+++|+-+.|... ...||.+-+-++-.|. ....+.+.+ +-||.+-.+.+- --++.|+..|+.+-..-
T Consensus 390 Cs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHc 469 (2195)
T KOG2122|consen 390 CSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHC 469 (2195)
T ss_pred hhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcc
Confidence 12345666666655554 4555666666777997 334444433 444555444433 57899999999985544
Q ss_pred CccchHH-----HHHHHHHHhhcC------------C--------------c-hhchHHH-HHHHHHhhcCCCChhHHhh
Q 000737 995 QRFQREA-----AAAALSEFVRYS------------G--------------G-FDSLLEQ-MVEALCRHVSDESPTVRGL 1041 (1322)
Q Consensus 995 ~~~~Ri~-----a~aflsEll~~~------------~--------------~-~~~ll~~-~~~~L~~~l~D~~~~VR~l 1041 (1322)
.+..+-. |.+||+-.|.+- + + .+.+.+. .+.+|++.|+..+.+|-.=
T Consensus 470 teNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSN 549 (2195)
T KOG2122|consen 470 TENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSN 549 (2195)
T ss_pred cccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeec
Confidence 4444422 468887766431 1 1 0122222 7888999999999998888
Q ss_pred hhhcccCCCc--hhHhh--hHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccC
Q 000737 1042 CLRGLVQIPS--IHIHQ--YATQVLSVILALLDDLDESVQLTAVSCLLTILKSS 1091 (1322)
Q Consensus 1042 alrGLg~l~~--~~v~~--~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l 1091 (1322)
++-.|.|+.- .+..+ .--..++-+.+.+..++..|++.+..+|.+++..=
T Consensus 550 aCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 550 ACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred chhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 8888999863 11111 11123444555556667889999999999999653
No 159
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.16 E-value=1.2e+02 Score=35.77 Aligned_cols=196 Identities=16% Similarity=0.124 Sum_probs=106.0
Q ss_pred HHHHHhhcccC-ChHHHHHHHHHHHHHh------ccC-CcccchhhHHhHHHHhcccccc-CChhHHHHHH---HHHHHH
Q 000737 1062 LSVILALLDDL-DESVQLTAVSCLLTIL------KSS-SKDAVEPILLNLSVRLRNLQVS-MNVKMRRNAF---AAFGAL 1129 (1322)
Q Consensus 1062 L~all~~L~d~-d~~V~leam~~L~~ll------~~l-~~~~~~~~l~~l~~~lrpffed-e~~~vR~aAi---~lfG~L 1129 (1322)
+.++.+.+... |+++..++..+|+.+- ... +..++..+ ..+++| ....+|.++= +++.+|
T Consensus 243 l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl--------~~~i~d~n~~~~r~l~k~~lslLral 314 (461)
T KOG4199|consen 243 LTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTL--------LRCIDDSNEQGNRTLAKTCLSLLRAL 314 (461)
T ss_pred HHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHH--------HHHHhhhchhhHHHHHHHHHHHHHHH
Confidence 44444444432 4567777777777663 111 12233322 234566 4466886554 455555
Q ss_pred hhccCCcchHh-HHHHHHHhHHHHHH-hccCCChhHHHHHHHHHHhhcchhhh-hhhhhhccccCCCCCCCChHHHHHHH
Q 000737 1130 SNFGVGSQREA-FLEQIHAMLPRLIL-HIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNSHCFNSDHRSDYETFVRDL 1206 (1322)
Q Consensus 1130 ~~~~~~~~~~~-~~eqv~~~LvpLLl-HL~D~~~~V~~ack~tL~~~a~~L~~-~l~~lf~~~~~~~~~~l~~~~f~~~~ 1206 (1322)
+. ..+-+.. ...+....++.|++ |+. +|.|.+++..+++.++ |+. .=.+-+ .+.| ..++
T Consensus 315 AG--~DsvKs~IV~~gg~~~ii~l~~~h~~--~p~Vi~~~~a~i~~l~--LR~pdhsa~~----ie~G--------~a~~ 376 (461)
T KOG4199|consen 315 AG--SDSVKSTIVEKGGLDKIITLALRHSD--DPLVIQEVMAIISILC--LRSPDHSAKA----IEAG--------AADL 376 (461)
T ss_pred hC--CCchHHHHHHhcChHHHHHHHHHcCC--ChHHHHHHHHHHHHHH--hcCcchHHHH----Hhcc--------hHHH
Confidence 54 2223333 44567788888888 544 4577776655554433 121 111111 1111 1234
Q ss_pred HHHHHHhCcchHHHHHHHHHhhhcCCChhhHHHHHHHHHHhcccCc--hhhhhhccHHHHHHHHHHHhccCCChHHHHHH
Q 000737 1207 TRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCD--DQHILSLFYTQVFGLLVVKLSQSADAIVRATC 1284 (1322)
Q Consensus 1207 ~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~--~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~A 1284 (1322)
.-.-|+.||-+ ..++++|++.|--++-+.. ...+...+.|. |+. .-+-..+.++..|
T Consensus 377 avqAmkahP~~----------------a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~----Li~-~A~~~h~tce~~a 435 (461)
T KOG4199|consen 377 AVQAMKAHPVA----------------AQVQRNACNMIRNIVVRSAENRTILLANGIEK----LIR-TAKANHETCEAAA 435 (461)
T ss_pred HHHHHHhCcHH----------------HHHHHHHHHHHHHHHHhhhhccchHHhccHHH----HHH-HHHhcCccHHHHH
Confidence 44555555543 3488999999988875433 22223334443 444 4556889999999
Q ss_pred HHHHHHHH-HHhccccccccc
Q 000737 1285 SSSLGWLL-KSINSHSWRSTR 1304 (1322)
Q Consensus 1285 a~aL~~l~-k~~~~~~~~~~~ 1304 (1322)
..||.-|+ ..-+.-.|++.+
T Consensus 436 kaALRDLGc~v~lre~wtg~~ 456 (461)
T KOG4199|consen 436 KAALRDLGCDVYLREEWTGAE 456 (461)
T ss_pred HHHHHhcCcchhhHHHhcccc
Confidence 99998887 233334576643
No 160
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=76.87 E-value=40 Score=40.04 Aligned_cols=186 Identities=18% Similarity=0.111 Sum_probs=102.9
Q ss_pred hHHHHHHHHHhhhcc-cCccchHHHHHHHH-HHhhcCCchhchHHHHHHHHHhhcCCCChhHHhhhhhcccCCCc----h
Q 000737 979 EVQTICLILTKSINR-QQRFQREAAAAALS-EFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS----I 1052 (1322)
Q Consensus 979 ~~~~il~~l~~~l~s-~~~~~Ri~a~afls-Ell~~~~~~~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~----~ 1052 (1322)
.-..|++.+.|++.. .+|.-...++..|. .+... ...+.+.++..+.++++|..+.||+.-++.+|..-. .
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~---~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~ 95 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL---SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNS 95 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh---CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCc
Confidence 568899999999887 44555555554433 33222 234557789999999999999999999999997642 3
Q ss_pred hHhhhHhHHHHHHHhhcccCC----hH----HHHHHHHHHHH---Hhc------------cCCcccchhhHHhHHHHhcc
Q 000737 1053 HIHQYATQVLSVILALLDDLD----ES----VQLTAVSCLLT---ILK------------SSSKDAVEPILLNLSVRLRN 1109 (1322)
Q Consensus 1053 ~v~~~~~~lL~all~~L~d~d----~~----V~leam~~L~~---ll~------------~l~~~~~~~~l~~l~~~lrp 1109 (1322)
....+...++|.+++.+++.. .. ....|.-.+.. -+. .++++ .+++.+- .
T Consensus 96 ~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~k--ps~ll~~-----k 168 (339)
T PF12074_consen 96 DSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPK--PSFLLSE-----K 168 (339)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCC--cchhcCH-----H
Confidence 444555667777777765521 11 12222222220 000 00111 0111110 1
Q ss_pred cccc-CChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHHhccCCChhHHHHHHHHHHhhc
Q 000737 1110 LQVS-MNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVA 1175 (1322)
Q Consensus 1110 ffed-e~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a 1175 (1322)
++.+ -+++--...++++-.+.................++++-++.|- -..+.||+.|..++.++.
T Consensus 169 vyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~-~~~~~vR~~A~~~l~~l~ 234 (339)
T PF12074_consen 169 VYSKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSS-NVSWKVRRAALSALKKLY 234 (339)
T ss_pred HHhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHH
Confidence 1222 2222223333444344332111111222567888999998873 237789999999988654
No 161
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=76.60 E-value=27 Score=40.90 Aligned_cols=169 Identities=12% Similarity=0.042 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHH
Q 000737 1075 SVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLIL 1154 (1322)
Q Consensus 1075 ~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLl 1154 (1322)
-|=..|+.+-..|+..++.+.+..-+.=...-|.|||..-+-.||-.-+.+|-.-.= . ....++-.+...+..++-
T Consensus 70 GVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~l-p---L~~~L~p~l~~li~slLp 145 (307)
T PF04118_consen 70 GVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYL-P---LGPALRPCLKGLILSLLP 145 (307)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-C---ccHHHHHHHHHHHHHhcc
Confidence 377788888899998888887766665566778999999999999999999988442 1 112445555556666667
Q ss_pred hccCCChhHHHHHHHHHHhhcchhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCCh
Q 000737 1155 HIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWP 1234 (1322)
Q Consensus 1155 HL~D~~~~V~~ack~tL~~~a~~L~~~l~~lf~~~~~~~~~~l~~~~f~~~~~k~L~~~~~~~~~~~l~~~l~ylkS~~~ 1234 (1322)
=+.|++.++-..+-..+..+... ++...|+..+|.+++. .+
T Consensus 146 GLede~sE~~~~~~~ll~~l~~~-------------------v~~~~F~~~lwl~ii~--------------------sp 186 (307)
T PF04118_consen 146 GLEDEGSEFFDRTLKLLDKLKEA-------------------VGDKYFWQCLWLCIIT--------------------SP 186 (307)
T ss_pred ccccCCchHHHHHHHHHHHHHHh-------------------cChhHHHHHHHHHHhc--------------------Cc
Confidence 78899988888776666553321 1112377777777763 34
Q ss_pred hhHHHHHHHHHHhcccC-------ch---hhhhhccHHHHHHHHHHHhccCCChHHHHHHHHH
Q 000737 1235 IIQANAIYFSSSILCLC-------DD---QHILSLFYTQVFGLLVVKLSQSADAIVRATCSSS 1287 (1322)
Q Consensus 1235 ~IR~aA~~fiG~l~~~l-------~~---~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~a 1287 (1322)
.+|..|..|+-.-.... .. +.+-..+.+.+++++.. .++|++..|++.+-.-
T Consensus 187 ~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~-~L~D~~iLVqR~~LDl 248 (307)
T PF04118_consen 187 SRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCA-CLEDENILVQRGFLDL 248 (307)
T ss_pred chhHHHHHHHHHhCCcccccccccchHHHHHhcCCCccHHHHHHHH-HhCCchHHHHHHHHHH
Confidence 45666665443322111 11 11222367789999998 7999999999966544
No 162
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=76.45 E-value=53 Score=41.66 Aligned_cols=109 Identities=17% Similarity=0.164 Sum_probs=75.0
Q ss_pred hccccccCChhHHHHHHHHHHHHhh-ccC-CcchHhHHHHHHHhHHHHHH-hccCCChhHHHHHHHHHHhhcchhhhhhh
Q 000737 1107 LRNLQVSMNVKMRRNAFAAFGALSN-FGV-GSQREAFLEQIHAMLPRLIL-HIYDDDLSVRQACRNTLKQVAPFMEIGVY 1183 (1322)
Q Consensus 1107 lrpffede~~~vR~aAi~lfG~L~~-~~~-~~~~~~~~eqv~~~LvpLLl-HL~D~~~~V~~ack~tL~~~a~~L~~~l~ 1183 (1322)
+-.++++|+..+|.+-+.+.|.+.. +.. +.-.+-+. |-.+.|+-|+. .++|.+|-+|.++--.+-.+..
T Consensus 304 ~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~-~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifd------- 375 (1128)
T COG5098 304 FDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYK-QKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFD------- 375 (1128)
T ss_pred HHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHH-HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHh-------
Confidence 4568899999999999999999986 221 11122222 34456666655 9999999999988555544321
Q ss_pred hhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhhHHHHHHHHHHhcc
Q 000737 1184 GIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILC 1249 (1322)
Q Consensus 1184 ~lf~~~~~~~~~~l~~~~f~~~~~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~ 1249 (1322)
. -.+++++-+.++.-+..-+.+-...+|++|+.+...++-
T Consensus 376 ----l----------------------~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 376 ----L----------------------NSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred ----C----------------------cccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 1 123455556666667778888889999999988766653
No 163
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=75.11 E-value=11 Score=46.59 Aligned_cols=87 Identities=11% Similarity=0.106 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHhCcc---hHHHHHHHHHhhhcCCChhhHHHHHHHHHHhcccCchhhhhhccHHHHHHHHHHHhcc---C
Q 000737 1202 FVRDLTRQFVQHFPS---RIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQ---S 1275 (1322)
Q Consensus 1202 f~~~~~k~L~~~~~~---~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~---D 1275 (1322)
|+..+..|.++..|+ .+.-++...+..+.|+...+|......+..+..... .+| |.+++.|.++|.+ |
T Consensus 70 fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~-----eID-e~l~N~L~ekl~~R~~D 143 (885)
T COG5218 70 FLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVR-----EID-EVLANGLLEKLSERLFD 143 (885)
T ss_pred HHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcc-----hHH-HHHHHHHHHHHHHHHhc
Confidence 555556666666665 445566677889999999999998887777764432 122 6677776665554 9
Q ss_pred CChHHHHHHHHHHHHHHHH
Q 000737 1276 ADAIVRATCSSSLGWLLKS 1294 (1322)
Q Consensus 1276 pdp~VR~~Aa~aL~~l~k~ 1294 (1322)
.+|.||.-|.-+|.++++-
T Consensus 144 RE~~VR~eAv~~L~~~Qe~ 162 (885)
T COG5218 144 REKAVRREAVKVLCYYQEM 162 (885)
T ss_pred chHHHHHHHHHHHHHHHhc
Confidence 9999999999999999843
No 164
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=74.72 E-value=99 Score=37.40 Aligned_cols=144 Identities=15% Similarity=0.137 Sum_probs=83.1
Q ss_pred HHHHHHHhhcCCCChhHHhhhhhcccCCCc--hhHhhhHhHHHH-HHHhhcccC--ChHHHHHHHHHHHHHhccCCcccc
Q 000737 1022 QMVEALCRHVSDESPTVRGLCLRGLVQIPS--IHIHQYATQVLS-VILALLDDL--DESVQLTAVSCLLTILKSSSKDAV 1096 (1322)
Q Consensus 1022 ~~~~~L~~~l~D~~~~VR~lalrGLg~l~~--~~v~~~~~~lL~-all~~L~d~--d~~V~leam~~L~~ll~~l~~~~~ 1096 (1322)
.....+...+-+++..||.++.|-+-.+.. +.+......=++ -+..+|+-. .+.=+.+|+.-.+++++.- ++.
T Consensus 25 ~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~--~~~ 102 (371)
T PF14664_consen 25 FFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIK--KGP 102 (371)
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhc--CCc
Confidence 334444433444449999999998875533 222221111111 233344332 2335567888888888752 345
Q ss_pred hhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHHhccCCChhHHHHHHHHHHh
Q 000737 1097 EPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQ 1173 (1322)
Q Consensus 1097 ~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~ 1173 (1322)
..+-..++..|-..-|++++.+|..++..+..++-... .+.- -.+++-.|+--+.|...++...+..++..
T Consensus 103 ~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P-----~lv~-~~gG~~~L~~~l~d~~~~~~~~l~~~lL~ 173 (371)
T PF14664_consen 103 KEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP-----ELVA-ECGGIRVLLRALIDGSFSISESLLDTLLY 173 (371)
T ss_pred ccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH-----HHHH-HcCCHHHHHHHHHhccHhHHHHHHHHHHH
Confidence 55667777788888888999999999999999875110 0000 01233444445666655666666666554
No 165
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=74.56 E-value=20 Score=45.19 Aligned_cols=130 Identities=16% Similarity=0.184 Sum_probs=79.2
Q ss_pred HHHhccCCcccchhhHHhHHHHhccccc--------cCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHH-h
Q 000737 1085 LTILKSSSKDAVEPILLNLSVRLRNLQV--------SMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLIL-H 1155 (1322)
Q Consensus 1085 ~~ll~~l~~~~~~~~l~~l~~~lrpffe--------de~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLl-H 1155 (1322)
..++...+...+..+...|-.+++|..+ .++...|..|-..+|.|++.... .+.+. + .++-.++ .
T Consensus 349 ~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~----l~~~d-~-~li~~LF~s 422 (501)
T PF13001_consen 349 SWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPS----LFSKD-L-SLIEFLFDS 422 (501)
T ss_pred hHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCcc----ccccc-H-HHHHHHHHH
Confidence 4444444444455555555555666663 46788999999999999984322 12111 1 2222233 5
Q ss_pred ccCCChhHHHHHHHHHHhhcchhhh-hhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCCh
Q 000737 1156 IYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWP 1234 (1322)
Q Consensus 1156 L~D~~~~V~~ack~tL~~~a~~L~~-~l~~lf~~~~~~~~~~l~~~~f~~~~~k~L~~~~~~~~~~~l~~~l~ylkS~~~ 1234 (1322)
|.++.++|+.+-..||..+++.+.+ .- . ++ .-.......+. ..|..+...
T Consensus 423 L~~~~~evr~sIqeALssl~~af~~~~~-----~----~~------~~~~~~~~~l~--------------~~~~~~~~~ 473 (501)
T PF13001_consen 423 LEDESPEVRVSIQEALSSLAPAFKDLPD-----D----ED------EQKRLLLELLL--------------LSYIQSEVR 473 (501)
T ss_pred hhCcchHHHHHHHHHHHHHHHHHhcccc-----c----hh------HHHHHHHHHHH--------------HhhccchhH
Confidence 6899999999999999998876555 21 0 00 01111111122 234447778
Q ss_pred hhHHHHHHHHHHhcc
Q 000737 1235 IIQANAIYFSSSILC 1249 (1322)
Q Consensus 1235 ~IR~aA~~fiG~l~~ 1249 (1322)
..|-+|+.|+..+.-
T Consensus 474 ~~R~~avk~an~~fp 488 (501)
T PF13001_consen 474 SCRYAAVKYANACFP 488 (501)
T ss_pred HHHHHHHHHHHHhCC
Confidence 899999999988764
No 166
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=74.02 E-value=19 Score=48.37 Aligned_cols=110 Identities=21% Similarity=0.157 Sum_probs=87.4
Q ss_pred HHHHHHHhhcCCCChhHHhhhhhcccCCCchhHhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHH
Q 000737 1022 QMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILL 1101 (1322)
Q Consensus 1022 ~~~~~L~~~l~D~~~~VR~lalrGLg~l~~~~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~ 1101 (1322)
+..+.+......+.+.||..+.|.+|.+...--......+++.++..+++.+.-+..++...+=.++..+...++.+|.+
T Consensus 816 ~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~ 895 (1549)
T KOG0392|consen 816 SLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNP 895 (1549)
T ss_pred hhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccce
Confidence 45677888889999999999999999887522222234567777777777666666666666666666666788889999
Q ss_pred hHHHHhccccccCChhHHHHHHHHHHHHhh
Q 000737 1102 NLSVRLRNLQVSMNVKMRRNAFAAFGALSN 1131 (1322)
Q Consensus 1102 ~l~~~lrpffede~~~vR~aAi~lfG~L~~ 1131 (1322)
=++.-|.+...|..+.||.+|-..|..+..
T Consensus 896 Llv~pllr~msd~~d~vR~aat~~fa~lip 925 (1549)
T KOG0392|consen 896 LLVVPLLRRMSDQIDSVREAATKVFAKLIP 925 (1549)
T ss_pred eehhhhhcccccchHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999987
No 167
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=73.83 E-value=1.9e+02 Score=33.90 Aligned_cols=228 Identities=18% Similarity=0.199 Sum_probs=124.7
Q ss_pred chHHHHHHHHHhhcCCCChhHHhhhhhcccCCCc----hhHhh----hHhHHHHHHHhhcccCChHHHHHHHHHHHHHhc
Q 000737 1018 SLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS----IHIHQ----YATQVLSVILALLDDLDESVQLTAVSCLLTILK 1089 (1322)
Q Consensus 1018 ~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~----~~v~~----~~~~lL~all~~L~d~d~~V~leam~~L~~ll~ 1089 (1322)
.+..+.+..|..++..++..|+.++++-+|.+.+ +.|.. -...+++-++......|++|...|...+++|-.
T Consensus 78 hlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrial 157 (524)
T KOG4413|consen 78 HLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIAL 157 (524)
T ss_pred hhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHh
Confidence 4456678899999999999999999999998865 23321 123456667777777789999999999999863
Q ss_pred cCCcccchhhHHhH---HHHhccccccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHH-hccC-CChhHH
Q 000737 1090 SSSKDAVEPILLNL---SVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLIL-HIYD-DDLSVR 1164 (1322)
Q Consensus 1090 ~l~~~~~~~~l~~l---~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLl-HL~D-~~~~V~ 1164 (1322)
. +.+++.++.+= -.++|.+--+-++-+|.--.++.=.+...+. +..-+--...|+.+++ -++- ++.-|+
T Consensus 158 f--paaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSp----esaneckkSGLldlLeaElkGteDtLVi 231 (524)
T KOG4413|consen 158 F--PAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISP----ESANECKKSGLLDLLEAELKGTEDTLVI 231 (524)
T ss_pred c--HHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCH----HHHhHhhhhhHHHHHHHHhcCCcceeeh
Confidence 2 23333332210 0011222222333344444444444433221 1111222245555555 5555 455566
Q ss_pred HHHHHHHHhhc------chhhh-hhhhhhccccCCCCCCCChHHH--HHHHHHHHHH---------hCcchHHHHHHHHH
Q 000737 1165 QACRNTLKQVA------PFMEI-GVYGIFNSHCFNSDHRSDYETF--VRDLTRQFVQ---------HFPSRIDSYMGSTI 1226 (1322)
Q Consensus 1165 ~ack~tL~~~a------~~L~~-~l~~lf~~~~~~~~~~l~~~~f--~~~~~k~L~~---------~~~~~~~~~l~~~l 1226 (1322)
-.|-.-....+ .|+.- .+-.++++--.+.+ .=.|+.| +--+.|.+.+ .--+.+-+++...+
T Consensus 232 anciElvteLaeteHgreflaQeglIdlicnIIsGad-sdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsf 310 (524)
T KOG4413|consen 232 ANCIELVTELAETEHGREFLAQEGLIDLICNIISGAD-SDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSF 310 (524)
T ss_pred hhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCC-CCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhH
Confidence 66654443333 12222 22333333211111 1123333 1111222211 11124456777888
Q ss_pred hhhcCCChhhHHHHHHHHHHhcccCc
Q 000737 1227 QAFEAPWPIIQANAIYFSSSILCLCD 1252 (1322)
Q Consensus 1227 ~ylkS~~~~IR~aA~~fiG~l~~~l~ 1252 (1322)
....+..++...+|+--+|.+..+..
T Consensus 311 EmiEmnDpdaieaAiDalGilGSnte 336 (524)
T KOG4413|consen 311 EMIEMNDPDAIEAAIDALGILGSNTE 336 (524)
T ss_pred HhhhcCCchHHHHHHHHHHhccCCcc
Confidence 99999999999999999999987654
No 168
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=73.06 E-value=4.7 Score=32.04 Aligned_cols=29 Identities=31% Similarity=0.242 Sum_probs=25.5
Q ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHHHH
Q 000737 1263 QVFGLLVVKLSQSADAIVRATCSSSLGWLL 1292 (1322)
Q Consensus 1263 ~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1292 (1322)
..++.|+. |++++++.||..|+.||+.|-
T Consensus 12 g~i~~Lv~-ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQ-LLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHH-HTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHH-HHcCCCHHHHHHHHHHHHHHh
Confidence 36788998 889999999999999999874
No 169
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=72.98 E-value=1.7e+02 Score=40.72 Aligned_cols=103 Identities=14% Similarity=0.147 Sum_probs=45.4
Q ss_pred HHHHHHhhcCCCChhHHhhhhhcccCCCc-hhHhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHH
Q 000737 1023 MVEALCRHVSDESPTVRGLCLRGLVQIPS-IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILL 1101 (1322)
Q Consensus 1023 ~~~~L~~~l~D~~~~VR~lalrGLg~l~~-~~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~ 1101 (1322)
.+..+...+..+.+.+|.-|+|.|+++.. +..-.-.+.+..++-.-+-|....|+-.|+.-+|+-+-.- ++.+..|.-
T Consensus 817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~-~e~~~qyY~ 895 (1692)
T KOG1020|consen 817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSI-PELIFQYYD 895 (1692)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhcc-HHHHHHHHH
Confidence 33444444445555555555555555543 2222223334444444444444445544555444443221 222333333
Q ss_pred hHHHHhccccccCChhHHHHHHHHHHHHh
Q 000737 1102 NLSVRLRNLQVSMNVKMRRNAFAAFGALS 1130 (1322)
Q Consensus 1102 ~l~~~lrpffede~~~vR~aAi~lfG~L~ 1130 (1322)
.|+.|| .|....||--+|....+++
T Consensus 896 ~i~erI----lDtgvsVRKRvIKIlrdic 920 (1692)
T KOG1020|consen 896 QIIERI----LDTGVSVRKRVIKILRDIC 920 (1692)
T ss_pred HHHhhc----CCCchhHHHHHHHHHHHHH
Confidence 333332 3444555555555555544
No 170
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=72.74 E-value=93 Score=37.75 Aligned_cols=218 Identities=16% Similarity=0.166 Sum_probs=112.0
Q ss_pred HHhhcccCC--hHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccCCcchHhHH
Q 000737 1065 ILALLDDLD--ESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFL 1142 (1322)
Q Consensus 1065 ll~~L~d~d--~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~ 1142 (1322)
++..|..++ ..|.+++-..|-.++-.-..+.+..+...+...+- =+.|..+.-.+..+++|++-+.+.. ...
T Consensus 185 Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lA--K~~e~~e~aR~~~~il~~mFKHSee----t~~ 258 (832)
T KOG3678|consen 185 LLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLA--KEREPVELARSVAGILEHMFKHSEE----TCQ 258 (832)
T ss_pred HHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhh--hhcCcHHHHHHHHHHHHHHhhhhHH----HHH
Confidence 344444433 34667776666666533222222222222222222 2455667777788888888763211 111
Q ss_pred HHH-HHhHHHHHHhccCCChhHHHHHHHHHHhhcchhhh-hhhhhhcccc--C------CCCC--C--------------
Q 000737 1143 EQI-HAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNSHC--F------NSDH--R-------------- 1196 (1322)
Q Consensus 1143 eqv-~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~~-~l~~lf~~~~--~------~~~~--~-------------- 1196 (1322)
.-| -..+--.++...-.+|++-.-|..||+.|+-.-+- .-+.+.++.. | +.++ +
T Consensus 259 ~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat~K 338 (832)
T KOG3678|consen 259 RLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLATNK 338 (832)
T ss_pred HHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhhh
Confidence 111 13344556677777899999999999999855444 2233444331 0 0000 0
Q ss_pred ---------------------CChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhhHHHHHHHHH--HhcccCch
Q 000737 1197 ---------------------SDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSS--SILCLCDD 1253 (1322)
Q Consensus 1197 ---------------------l~~~~f~~~~~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG--~l~~~l~~ 1253 (1322)
++-+.|.+|--++- +++-..-+...+..++|..-+-|.-++...- ..++.+
T Consensus 339 E~E~~VrkS~TlaLVEPlva~~DP~~FARD~hd~a----QG~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs~-- 412 (832)
T KOG3678|consen 339 EVEREVRKSGTLALVEPLVASLDPGRFARDAHDYA----QGRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIKSL-- 412 (832)
T ss_pred hhhHHHhhccchhhhhhhhhccCcchhhhhhhhhh----ccCChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHHHHh--
Confidence 00011222222211 2233344555778888887777665554321 111111
Q ss_pred hhhhhccHH-HHHHHHHHHhccCCChHHHHHHHHHHHHHHHHh
Q 000737 1254 QHILSLFYT-QVFGLLVVKLSQSADAIVRATCSSSLGWLLKSI 1295 (1322)
Q Consensus 1254 ~~~~~~~~e-~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~ 1295 (1322)
|.-..+-.| ..+.+|.+ +-..||..-..+|.+||-.+++.-
T Consensus 413 Q~K~kVFseIGAIQaLKe-vaSS~d~vaakfAseALtviGEEV 454 (832)
T KOG3678|consen 413 QGKTKVFSEIGAIQALKE-VASSPDEVAAKFASEALTVIGEEV 454 (832)
T ss_pred ccchhHHHHHHHHHHHHH-HhcCchHHHHHHHHHHHHHhcccc
Confidence 111111111 14456666 567999999999999999998543
No 171
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=72.69 E-value=7.6 Score=45.59 Aligned_cols=69 Identities=12% Similarity=0.041 Sum_probs=52.4
Q ss_pred HHHhhhcCCChhhHHHHHHHHHHhcccCchhhhhhccHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHH
Q 000737 1224 STIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLK 1293 (1322)
Q Consensus 1224 ~~l~ylkS~~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k 1293 (1322)
-.+.|++++.+.+|..|++.||...++-|.-+..-+... -...|...+.+|.+-.||.+|--|++-+.+
T Consensus 128 ~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~-~L~~Ll~~ls~~~~~~~r~kaL~AissLIR 196 (342)
T KOG2160|consen 128 PLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELG-ALSKLLKILSSDDPNTVRTKALFAISSLIR 196 (342)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcc-cHHHHHHHHccCCCchHHHHHHHHHHHHHh
Confidence 356699999999999999999999998885543222222 233444446789999999999999888774
No 172
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.41 E-value=3.3e+02 Score=36.12 Aligned_cols=146 Identities=14% Similarity=0.146 Sum_probs=78.9
Q ss_pred CCchhhHHHhHHHHHHHHhhhCChhHHHHHHHHHhhhcccCccch-HHH---HHHHHHHhhcCCchhchHHHHHHHHHhh
Q 000737 955 QNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQR-EAA---AAALSEFVRYSGGFDSLLEQMVEALCRH 1030 (1322)
Q Consensus 955 w~~~~~~~~GV~lLar~l~~~~~~~~~~il~~l~~~l~s~~~~~R-i~a---~aflsEll~~~~~~~~ll~~~~~~L~~~ 1030 (1322)
|+..+.-.-+..-+|..+.....++++++++.....--|....+= .++ ++.+++.+... ...+...++.|.++
T Consensus 481 ~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~---P~~ln~sl~~L~~~ 557 (982)
T KOG2022|consen 481 LNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEH---PMYLNPSLPLLFQG 557 (982)
T ss_pred HHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcC---CcccCchHHHHHHH
Confidence 444444444444455555555555666666654433223221111 122 23334433322 23344567788888
Q ss_pred cCCCChhHHhhhhhcccCCC---chhHhhhHhHHHHHHHhhcccCC--hHHHHHHHHHHHHHhccCCcccchhhHHhHHH
Q 000737 1031 VSDESPTVRGLCLRGLVQIP---SIHIHQYATQVLSVILALLDDLD--ESVQLTAVSCLLTILKSSSKDAVEPILLNLSV 1105 (1322)
Q Consensus 1031 l~D~~~~VR~lalrGLg~l~---~~~v~~~~~~lL~all~~L~d~d--~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~ 1105 (1322)
+..+...+...+ +|-.+. .++...|....+.++-+.+-..+ ..+.+..|.++|.++..+..+..-.++..|..
T Consensus 558 Lh~sk~s~q~i~--tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin 635 (982)
T KOG2022|consen 558 LHNSKESEQAIS--TLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLIN 635 (982)
T ss_pred hcCchHHHHHHH--HHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHH
Confidence 875555444332 233333 25666777777777777665533 56888889999999888775555555544443
No 173
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=72.16 E-value=16 Score=47.48 Aligned_cols=126 Identities=16% Similarity=0.160 Sum_probs=88.6
Q ss_pred hchHHHHHHHHHhhc-CCCChhHHhhhhhcccCCCc---hhHhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhcc--
Q 000737 1017 DSLLEQMVEALCRHV-SDESPTVRGLCLRGLVQIPS---IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKS-- 1090 (1322)
Q Consensus 1017 ~~ll~~~~~~L~~~l-~D~~~~VR~lalrGLg~l~~---~~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~-- 1090 (1322)
..+.+..++.|.+-| .+.+..+|.=-+-++|.+.. ..+.+|.| -+-..|.|+++-|+..++.-|+++++.
T Consensus 963 ~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP----~I~~~L~Dp~~iVRrqt~ilL~rLLq~~~ 1038 (1529)
T KOG0413|consen 963 DRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIP----MIAASLCDPSVIVRRQTIILLARLLQFGI 1038 (1529)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhH----HHHHHhcCchHHHHHHHHHHHHHHHhhhh
Confidence 456677788888777 45678888888888888765 45666754 466778999999999999999999953
Q ss_pred CCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHHhccCC
Q 000737 1091 SSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDD 1159 (1322)
Q Consensus 1091 l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~ 1159 (1322)
..|.+ .|.+|.-.-+-|++++||..|=.+||++... ......+ ++.|-.++|++|-
T Consensus 1039 vKw~G------~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~-~~P~~f~------~~FVe~i~~ln~~ 1094 (1529)
T KOG0413|consen 1039 VKWNG------ELFIRFMLALLDANEDIRNDAKFYISEVLQS-EEPNFFP------LNFVEYIIALNQA 1094 (1529)
T ss_pred hhcch------hhHHHHHHHHcccCHHHHHHHHHHHHHHHhh-cCccchH------HHHHHHHHHHHHH
Confidence 33332 3344444456799999999999999999982 2222222 3556666666543
No 174
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=71.72 E-value=3.4e+02 Score=35.99 Aligned_cols=98 Identities=8% Similarity=0.109 Sum_probs=54.2
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHhhcchhhhhhhhhhccccCCCCCCCCh----HHHHHHHH---HHHHHhCcchHHHH
Q 000737 1149 LPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDY----ETFVRDLT---RQFVQHFPSRIDSY 1221 (1322)
Q Consensus 1149 LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~~~l~~lf~~~~~~~~~~l~~----~~f~~~~~---k~L~~~~~~~~~~~ 1221 (1322)
.-.+..|+..+++..++.--.++..++.+..-.-+. .+..+... ..+| +.+..-++ ..+..-.|+.+..+
T Consensus 443 W~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~--~~~~~~~~-~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l 519 (727)
T PF12726_consen 443 WKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK--EKDELDPA-KTQFNKSLGQITDLISQILERLSDFDPSHLKEL 519 (727)
T ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc--cccCcchH-HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 355666888888887777766666666554442121 11111111 1112 22222222 22233345555555
Q ss_pred HH------HHHhhhcCCChhhHHHHHHHHHHhcc
Q 000737 1222 MG------STIQAFEAPWPIIQANAIYFSSSILC 1249 (1322)
Q Consensus 1222 l~------~~l~ylkS~~~~IR~aA~~fiG~l~~ 1249 (1322)
+. ..+..+=||..+++.+|.-+++....
T Consensus 520 ~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d 553 (727)
T PF12726_consen 520 LSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFD 553 (727)
T ss_pred HcCcchhhHHHhheeCCChHHHHHHHHHHHHHhc
Confidence 44 24556778999999999999987764
No 175
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.59 E-value=7.5 Score=44.66 Aligned_cols=65 Identities=12% Similarity=0.076 Sum_probs=45.0
Q ss_pred HHHHHhhhcCCChhhHHHHHH-HHHHhcccCchhhhhhccHHHHHHHHHHHhccCCChHHHHHHHHHHHHHH
Q 000737 1222 MGSTIQAFEAPWPIIQANAIY-FSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1292 (1322)
Q Consensus 1222 l~~~l~ylkS~~~~IR~aA~~-fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1292 (1322)
+...+.+++|++|.+|++|+. .+|++.+ +.+-+. -+.+..++++.. |.+|++| -.-|++||..+.
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~-~~~~~~lk~l~q-L~~~~~~--~~~a~~alVnls 70 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLS-KYSEALLKDLTQ-LLKDLDP--AEPAATALVNLS 70 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhc-cchhhhHHHHHH-HccCccc--ccHHHHHHHHHH
Confidence 456788999999999999993 3455554 222221 245677888888 8999999 455666666654
No 176
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=71.13 E-value=9.5 Score=38.19 Aligned_cols=80 Identities=13% Similarity=-0.019 Sum_probs=52.0
Q ss_pred hCcchHHHHHHHHHhhh-cCCChhhHHHHHHHHHHhcccCchhhhhhccHHHHHHHHHHHhccCCChHHHHHHHHHHHHH
Q 000737 1213 HFPSRIDSYMGSTIQAF-EAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWL 1291 (1322)
Q Consensus 1213 ~~~~~~~~~l~~~l~yl-kS~~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l 1291 (1322)
+|.+.=...+...+.++ +|..+.+-+-|+.=||.+++++|. .+.-+..-..-..+.. |..+|||.||.-|-.|+..+
T Consensus 36 kf~~~~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~-gr~ii~~lg~K~~vM~-Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 36 KFEENNFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPN-GRNIIEKLGAKERVME-LMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp GGSSGGGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GG-GHHHHHHHSHHHHHHH-HTS-SSHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChh-HHHHHHhcChHHHHHH-HhcCCCHHHHHHHHHHHHHH
Confidence 33444445666677777 455666777788889999999873 2211222223344555 78899999999999998887
Q ss_pred HHH
Q 000737 1292 LKS 1294 (1322)
Q Consensus 1292 ~k~ 1294 (1322)
.-.
T Consensus 114 m~~ 116 (119)
T PF11698_consen 114 MVN 116 (119)
T ss_dssp HHH
T ss_pred HHh
Confidence 643
No 177
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=71.11 E-value=15 Score=36.08 Aligned_cols=75 Identities=16% Similarity=0.127 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHH
Q 000737 1076 VQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLI 1153 (1322)
Q Consensus 1076 V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLL 1153 (1322)
-...++.+++.++.. ....+.+++++|+--|+.-++. +++|..|++....+.+.-..++-.++.+|+...++|..
T Consensus 31 ek~~~i~ai~~lI~~-~g~~i~~a~pQI~acL~saL~~--~eL~~~al~~W~~~i~~L~~~~l~~ll~~~~~~i~~~~ 105 (107)
T smart00802 31 EKKRALRSIGFLIKL-MGKHISSALPQIMACLQSALEI--PELRSLALRCWHVLIKTLKEEELGPLLDQIFAAILPLW 105 (107)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 478888899998885 4578999999999999999974 56999999999999997777788899999888887753
No 178
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=70.89 E-value=1.4e+02 Score=34.52 Aligned_cols=132 Identities=14% Similarity=0.169 Sum_probs=82.4
Q ss_pred CCCchhHhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCccc--------chhhHHhHHHHhcccc-----ccC
Q 000737 1048 QIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDA--------VEPILLNLSVRLRNLQ-----VSM 1114 (1322)
Q Consensus 1048 ~l~~~~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~--------~~~~l~~l~~~lrpff-----ede 1114 (1322)
++....+.++-+-++|+++..+||.+..+...++..|..++....... +..++.+......-|+ +++
T Consensus 107 ~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~ 186 (282)
T PF10521_consen 107 QLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDE 186 (282)
T ss_pred cCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchh
Confidence 444467788889999999999999999999999999999998765443 3333333333222222 256
Q ss_pred ChhHHHHHHHHHHHHhhc---cCCcchHhHHHH-HHHhHHHHHHhccC-CChhHHHHHHHHHHhhcchhh
Q 000737 1115 NVKMRRNAFAAFGALSNF---GVGSQREAFLEQ-IHAMLPRLILHIYD-DDLSVRQACRNTLKQVAPFME 1179 (1322)
Q Consensus 1115 ~~~vR~aAi~lfG~L~~~---~~~~~~~~~~eq-v~~~LvpLLlHL~D-~~~~V~~ack~tL~~~a~~L~ 1179 (1322)
...+=..|+.++-.|++. ..+..+.....+ +..++..-+.|-.+ +++.++..--..+..+..-||
T Consensus 187 s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lG 256 (282)
T PF10521_consen 187 SLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELG 256 (282)
T ss_pred hHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhc
Confidence 666667777777777652 122233333333 33446666666655 456666655555555444433
No 179
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.40 E-value=3.4e+02 Score=35.52 Aligned_cols=35 Identities=11% Similarity=0.094 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHhhc
Q 000737 782 VSRTTQSLLSAAVHITDKHLRLETLGAISCLAENT 816 (1322)
Q Consensus 782 V~eI~~~i~~~L~~i~~~~~r~~~l~aI~lLa~~h 816 (1322)
++|.++.++.+..+-+-.+-|+.+.+++-.+++.+
T Consensus 20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~srkY 54 (970)
T KOG0946|consen 20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKY 54 (970)
T ss_pred HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999998
No 180
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=70.33 E-value=31 Score=44.61 Aligned_cols=195 Identities=15% Similarity=0.133 Sum_probs=117.0
Q ss_pred Hhhhccc-CccchHHHHHHHHHHhhcCC-c--hhchHHHHHHHHHhhcCCC-ChhHHhhhhhcccCCCc---hhHhh-hH
Q 000737 988 TKSINRQ-QRFQREAAAAALSEFVRYSG-G--FDSLLEQMVEALCRHVSDE-SPTVRGLCLRGLVQIPS---IHIHQ-YA 1058 (1322)
Q Consensus 988 ~~~l~s~-~~~~Ri~a~aflsEll~~~~-~--~~~ll~~~~~~L~~~l~D~-~~~VR~lalrGLg~l~~---~~v~~-~~ 1058 (1322)
+..+++. ++.+.+-|..=+.|.|---. + .....++++++|.+.++++ |+.+-.+|.|+|.++.+ ..+.. -.
T Consensus 173 L~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~ 252 (1051)
T KOG0168|consen 173 LQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVD 252 (1051)
T ss_pred HHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeec
Confidence 3344443 77777777777777665321 1 3466788999999999886 89999999999998853 11110 01
Q ss_pred hHHHHHHHhhcccCC-hHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccCCcc
Q 000737 1059 TQVLSVILALLDDLD-ESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQ 1137 (1322)
Q Consensus 1059 ~~lL~all~~L~d~d-~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~ 1137 (1322)
.-.+|+++.-|.--. -+|+-.++.+|-+|-..=+..-+..--+..+..-.-|| +-.+...|+..-...++.-..+.
T Consensus 253 ~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFF---Si~aQR~AlaiaaN~Cksi~sd~ 329 (1051)
T KOG0168|consen 253 EHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFF---SIHAQRVALAIAANCCKSIRSDE 329 (1051)
T ss_pred ccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCCCcc
Confidence 125788877776432 46888888888887654332223333333444334455 66888899988888887544333
Q ss_pred hHhHHHHHHHhHHHHHHhccCCChhHHHHHHHHHHhhcc-hhhh--hhhhhhccc
Q 000737 1138 REAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAP-FMEI--GVYGIFNSH 1189 (1322)
Q Consensus 1138 ~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~-~L~~--~l~~lf~~~ 1189 (1322)
.-|.-+++-.|-||+- -.+..+......+|.+++- +..- ++.+++...
T Consensus 330 -f~~v~ealPlL~~lLs---~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~d 380 (1051)
T KOG0168|consen 330 -FHFVMEALPLLTPLLS---YQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHD 380 (1051)
T ss_pred -chHHHHHHHHHHHHHh---hccchhHHHHHHHHHHHHHhcccChHHHHHHhchh
Confidence 3344444444444444 3444555555555555553 3333 556665543
No 181
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.38 E-value=21 Score=41.25 Aligned_cols=97 Identities=16% Similarity=0.091 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHH
Q 000737 1074 ESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLI 1153 (1322)
Q Consensus 1074 ~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLL 1153 (1322)
.-|.-.|-.+|..+......+.+ ...|.|...+-++.+|+.|.-.|-.... .-...+..+|...-+++-+
T Consensus 184 rFvreda~kAL~aMV~~vtp~~~-------L~~L~~~~~~~n~r~r~~a~~~~~~~v~---rl~v~~~~~~~~~dl~~a~ 253 (334)
T KOG2933|consen 184 RFVREDAEKALVAMVNHVTPQKL-------LRKLIPILQHSNPRVRAKAALCFSRCVI---RLGVLPVLLQGSCDLSRAA 253 (334)
T ss_pred hHHHHHHHHHHHHHHhccChHHH-------HHHHHHHHhhhchhhhhhhhccccccce---eccccchhhHhHHHHHHHH
Confidence 34666777777777776655432 2344567778888888888777665444 1125566666665555555
Q ss_pred H-hccCCChhHHHHHHHHHHhhcchhhh
Q 000737 1154 L-HIYDDDLSVRQACRNTLKQVAPFMEI 1180 (1322)
Q Consensus 1154 l-HL~D~~~~V~~ack~tL~~~a~~L~~ 1180 (1322)
- |+.|.=|.++.++++.+-....-++|
T Consensus 254 ~~~~~d~Lp~~~~~a~~~~~~~~~v~~~ 281 (334)
T KOG2933|consen 254 QEQGSDKLPELREAARFVRLELKEVLKT 281 (334)
T ss_pred HhhhcccccccccchhHHHHhHHHHHHH
Confidence 4 89999999999999998887777776
No 182
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=68.78 E-value=39 Score=43.19 Aligned_cols=178 Identities=17% Similarity=0.174 Sum_probs=106.3
Q ss_pred HHHHHHHHhhhcccCccchHHHHHHHHH---HhhcCCchhchHHHHHHHHHhhcCCCChhHHhhhhhcccCCCc-hhHhh
Q 000737 981 QTICLILTKSINRQQRFQREAAAAALSE---FVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS-IHIHQ 1056 (1322)
Q Consensus 981 ~~il~~l~~~l~s~~~~~Ri~a~aflsE---ll~~~~~~~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~-~~v~~ 1056 (1322)
..++-.+.|.++-++..+ +.+||-| +|-.-...+.+.+.+++.|...++|.+..+...+|++++.+++ -++.-
T Consensus 348 ~~~~p~l~pi~~~~~~~~---~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~ 424 (700)
T KOG2137|consen 348 PKMLPALKPIYSASDPKQ---ALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPF 424 (700)
T ss_pred hhhhHHHHHHhccCCccc---chhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHH
Confidence 334444444444433222 3344444 3333333456778899999999999999999999999999986 33444
Q ss_pred hHhHHHHHHHhhcccC-ChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccCC
Q 000737 1057 YATQVLSVILALLDDL-DESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVG 1135 (1322)
Q Consensus 1057 ~~~~lL~all~~L~d~-d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~ 1135 (1322)
-++.++|.+....... +-.|...++-+++.+++.+|...+...++-+...+ .-.++.+--.-..+|-.+.-.-.+
T Consensus 425 vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~----~~~dp~iv~~~~~i~~~l~~~~~~ 500 (700)
T KOG2137|consen 425 VKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCI----KTRDPAIVMGFLRIYEALALIIYS 500 (700)
T ss_pred HHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh----cCCCcHHHHHHHHHHHHHHhhccc
Confidence 4566788876664332 35688899999999998887655444443333222 223455666666667666642111
Q ss_pred cchHhHHHHHHHhHHHHHHhccCCChhHHHHHHH
Q 000737 1136 SQREAFLEQIHAMLPRLILHIYDDDLSVRQACRN 1169 (1322)
Q Consensus 1136 ~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~ 1169 (1322)
. ++.+-++|.-.++|| ...+-..+.+=|++
T Consensus 501 g-~ev~~~~VlPlli~l---s~~~~L~~~Qy~~~ 530 (700)
T KOG2137|consen 501 G-VEVMAENVLPLLIPL---SVAPSLNGEQYNKY 530 (700)
T ss_pred c-eeeehhhhhhhhhhh---hhcccccHHHHHHH
Confidence 1 445555555444444 33444555554443
No 183
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=68.27 E-value=16 Score=44.08 Aligned_cols=142 Identities=20% Similarity=0.171 Sum_probs=89.0
Q ss_pred CCChhHHhhhhhcccCCCc----hhHhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcc---------cchhh
Q 000737 1033 DESPTVRGLCLRGLVQIPS----IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKD---------AVEPI 1099 (1322)
Q Consensus 1033 D~~~~VR~lalrGLg~l~~----~~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~---------~~~~~ 1099 (1322)
+.|..||..|+|++|-.-. .....+....-++++..|.|+.-.++..+..++++|-+.+-.. .++..
T Consensus 402 ~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ 481 (728)
T KOG4535|consen 402 SKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGL 481 (728)
T ss_pred hHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHH
Confidence 3577899999999996543 3445666777888999999877789999999999986543211 11222
Q ss_pred HHhHHHHhccccccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHH-hccCCChhHHHHHHHHHHhh
Q 000737 1100 LLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLIL-HIYDDDLSVRQACRNTLKQV 1174 (1322)
Q Consensus 1100 l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLl-HL~D~~~~V~~ack~tL~~~ 1174 (1322)
++.=..+.-..=+-.+++||..|++.+|.+..+...-.+-.+.+-+-..+..++- -.-..+..|+--+.++++..
T Consensus 482 ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNL 557 (728)
T KOG4535|consen 482 LLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNL 557 (728)
T ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHh
Confidence 3333334444556688999999999999999854322233333333333333332 11233445666666666553
No 184
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=68.17 E-value=1.2e+02 Score=36.82 Aligned_cols=35 Identities=23% Similarity=0.233 Sum_probs=26.3
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHHHHhccc
Q 000737 1264 VFGLLVVKLSQSADAIVRATCSSSLGWLLKSINSH 1298 (1322)
Q Consensus 1264 l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~~~ 1298 (1322)
++++|.+....++|+.++.+|+-=||.+.+-++..
T Consensus 335 L~~~L~~li~~~~d~~l~~KAtlLL~elL~la~~l 369 (371)
T PF14664_consen 335 LLEALVELIESSEDSSLSRKATLLLGELLHLASRL 369 (371)
T ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHhc
Confidence 56777774444559999999999999888776543
No 185
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=65.89 E-value=4e+02 Score=37.34 Aligned_cols=263 Identities=13% Similarity=0.082 Sum_probs=129.0
Q ss_pred hHHHHHHHHHhhhcccCccchHHH-HHHHHHHhhcCC-chhchHHHHHHHHHhhcCCCChhHHhhhhhcccCCCchhHhh
Q 000737 979 EVQTICLILTKSINRQQRFQREAA-AAALSEFVRYSG-GFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQ 1056 (1322)
Q Consensus 979 ~~~~il~~l~~~l~s~~~~~Ri~a-~aflsEll~~~~-~~~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~~~v~~ 1056 (1322)
.++.++..+....+ ...++++.- .-++++++.... +...+++-++..|...-.|..+.=|.++-.=+-..+...-.-
T Consensus 141 ~~~~~f~~f~d~~~-~~~~~~v~~~~~i~~~li~e~d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~ 219 (1266)
T KOG1525|consen 141 LVHELFRTFFDLAR-KGHPKKVFNMLDIAIMLITEEDTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDT 219 (1266)
T ss_pred HHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchh
Confidence 34555555555443 223333332 233445554332 234556666666666667777777776643333334310011
Q ss_pred hHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccCCc
Q 000737 1057 YATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGS 1136 (1322)
Q Consensus 1057 ~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~ 1136 (1322)
+..-+..+++..-. .-.++....-..+..+-. .....+..+..+|..=+-.++..+|..|+.+.|.+..--
T Consensus 220 i~~f~~~~~~~~~s-~~~~~~~~~he~i~~L~~-----~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~--- 290 (1266)
T KOG1525|consen 220 IANFLNSCLTEYKS-RQSSLKIKYHELILELWR-----IAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDK--- 290 (1266)
T ss_pred HHHHHHHHHhhccc-cccchhhHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcc---
Confidence 11112222222110 111111111222222211 111223344444444555689999999999999988611
Q ss_pred chHhHHHHHHHhHHHHHHhccCCChhHHHHHHHHHHhhcchhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcc
Q 000737 1137 QREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPS 1216 (1322)
Q Consensus 1137 ~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~~~l~~lf~~~~~~~~~~l~~~~f~~~~~k~L~~~~~~ 1216 (1322)
...+.++=-..+-.++=.+.|-.++||.+|-..-..|- + ++|+
T Consensus 291 -~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l----------~--------------------------~~~~ 333 (1266)
T KOG1525|consen 291 -DSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCL----------L--------------------------NNPS 333 (1266)
T ss_pred -hhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHH----------h--------------------------cCch
Confidence 11111222234455566788999999998843332221 1 1222
Q ss_pred hHHHHHHHHHhhhcCCChhhHHHHHHHHHHhcccCchhhh-hhccHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHH
Q 000737 1217 RIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHI-LSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKS 1294 (1322)
Q Consensus 1217 ~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~~~~~-~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~ 1294 (1322)
..........--+.+..+++|..-...++.+ +-... ...... +++...+ .++|.-+.||..|-..|..+++.
T Consensus 334 ~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~----~v~~~~l~~~~~-ll~~~~e-R~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 334 IAKASTILLALRERDLDEDVRVRTQVVIVAC----DVMKFKLVYIPL-LLKLVAE-RLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred hhhHHHHHHHHHhhcCChhhhheeeEEEEEe----ehhHhhhhhhHH-HHHHHHH-HHhhhhHHHHHHHHHHHHHHHHH
Confidence 2222111111223455555555444333322 11111 111223 7788888 68999999999999999999985
No 186
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=64.80 E-value=1.2e+02 Score=35.15 Aligned_cols=163 Identities=10% Similarity=0.089 Sum_probs=99.7
Q ss_pred cCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccCCcc-----hHhHHHHHHHhHHHHHHhcc-----CC
Q 000737 1090 SSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQ-----REAFLEQIHAMLPRLILHIY-----DD 1159 (1322)
Q Consensus 1090 ~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~-----~~~~~eqv~~~LvpLLlHL~-----D~ 1159 (1322)
.++...++....-+..-+-.+.||.+..+|.-+..++..+........ ...+.+.+..++.|.+.||- |+
T Consensus 107 ~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~ 186 (282)
T PF10521_consen 107 QLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDE 186 (282)
T ss_pred cCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchh
Confidence 667778888888888888899999999999999999999998543332 22234456678888888774 67
Q ss_pred ChhHHHHHHHHHHhhcchhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhhHHH
Q 000737 1160 DLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQAN 1239 (1322)
Q Consensus 1160 ~~~V~~ack~tL~~~a~~L~~~l~~lf~~~~~~~~~~l~~~~f~~~~~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~a 1239 (1322)
...+-.++=-|+..++.... ... ...+...+.+++++ .+.+ ......+.+.+.++..
T Consensus 187 s~~Ll~~ay~~L~~L~~~~~-------~~~--~~~r~~~l~~~l~e---~IL~-----------~~~~~~~~~~~~l~~~ 243 (282)
T PF10521_consen 187 SLELLQAAYPALLSLLKTQE-------NDD--SNPRSTWLDKILRE---GILS-----------SMEHESSFSYPRLRTV 243 (282)
T ss_pred hHHHHHHHHHHHHHHHHhhc-------cCC--cccchHHHHHHHHH---HHhh-----------hceeccccCchhHHHH
Confidence 77788888788777665432 110 00011112222211 1111 1111112456777777
Q ss_pred HHHHHHHhcccCchhhhhhccHHHHHHHHHHHhccCCCh
Q 000737 1240 AIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADA 1278 (1322)
Q Consensus 1240 A~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp 1278 (1322)
....+..++..+.-.-. .....++..|-+ ..+||+.
T Consensus 244 ll~~l~~~i~~lGi~~~--~hL~rii~~l~~-~l~npf~ 279 (282)
T PF10521_consen 244 LLQQLPPIIDELGISSV--KHLQRIIPVLSQ-ILENPFG 279 (282)
T ss_pred HHHHHHHHHHHhccHHH--HHHHHHHHHHHH-HhcCCCc
Confidence 77777766665442221 124556666766 6777753
No 187
>PF05536 Neurochondrin: Neurochondrin
Probab=63.31 E-value=4.2e+02 Score=33.88 Aligned_cols=292 Identities=14% Similarity=0.098 Sum_probs=147.4
Q ss_pred hhHHHhHHHHHHHHhhhCC-hhHHHHHHHHHhhhcccCccchHHH---HHHHHHHhhcCCchhchHHHHHHHHHhhcCCC
Q 000737 959 EKWINLIGDVAGCVSIKRP-KEVQTICLILTKSINRQQRFQREAA---AAALSEFVRYSGGFDSLLEQMVEALCRHVSDE 1034 (1322)
Q Consensus 959 ~~~~~GV~lLar~l~~~~~-~~~~~il~~l~~~l~s~~~~~Ri~a---~aflsEll~~~~~~~~ll~~~~~~L~~~l~D~ 1034 (1322)
.....-|..|..++..... ..+...++.|.-...++...+.+.. +..+++.+.+
T Consensus 94 ~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~---------------------- 151 (543)
T PF05536_consen 94 PQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN---------------------- 151 (543)
T ss_pred HHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh----------------------
Confidence 4455556666666655544 3444555555555545555555444 3344444433
Q ss_pred ChhHHhhhhhcccCCCc-------hhHhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcc-----cchhhHHh
Q 000737 1035 SPTVRGLCLRGLVQIPS-------IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKD-----AVEPILLN 1102 (1322)
Q Consensus 1035 ~~~VR~lalrGLg~l~~-------~~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~-----~~~~~l~~ 1102 (1322)
++.....+++-+.++.. .+-.+....+++.+-..+.........+++.-|+.++...+.. ....-..+
T Consensus 152 ~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~ 231 (543)
T PF05536_consen 152 QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSD 231 (543)
T ss_pred CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHH
Confidence 22222233222222211 1112223345555555555445567788899999998877421 11123334
Q ss_pred HHHHhccccc-cCChhHHHHHHHHHHHHhhccCC-------c-chHhHHHHHHHhH---HHHHHhc--cCCChhHHHHHH
Q 000737 1103 LSVRLRNLQV-SMNVKMRRNAFAAFGALSNFGVG-------S-QREAFLEQIHAML---PRLILHI--YDDDLSVRQACR 1168 (1322)
Q Consensus 1103 l~~~lrpffe-de~~~vR~aAi~lfG~L~~~~~~-------~-~~~~~~eqv~~~L---vpLLlHL--~D~~~~V~~ack 1168 (1322)
|..-|+..+. +..+.-|..|..+.+.+....+. + ...+|.--+.+.. |...++- ...++.-.....
T Consensus 232 l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~wl~~~~~~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~~~ 311 (543)
T PF05536_consen 232 LRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPEWLFADDKKSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPEKQ 311 (543)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChHhhcCCCCCCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHHHH
Confidence 4444444443 45678899999999999874221 1 1234444433222 2333322 114545556677
Q ss_pred HHHHhhcchhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhhHHHHHHHHHHhc
Q 000737 1169 NTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSIL 1248 (1322)
Q Consensus 1169 ~tL~~~a~~L~~~l~~lf~~~~~~~~~~l~~~~f~~~~~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~ 1248 (1322)
..|..|-.++...+..+.+... .++..++.+.+ ..+-+ .+..-+...+.|+++-|.+-.+--...
T Consensus 312 ~~L~~cf~ilE~~I~~l~~~~~-~~~~~~~~~~l-~kl~~--------~l~e~~~~vle~L~~~~d~~~~d~~~v----- 376 (543)
T PF05536_consen 312 RLLASCFSILEHFIGYLVRSLE-EESLDLDPDTL-LKLRT--------SLSETFSAVLEYLRDVWDESQKDPDFV----- 376 (543)
T ss_pred HHHHHHHHHHHHHHHHHHhccc-cccCCCCHHHH-HHHHH--------HHHHHHHHHHHHHHHhhhccccchHHH-----
Confidence 7788888777776665555321 12223443333 23323 344456667788888777211100000
Q ss_pred ccCchhhhhhccHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhcccccc
Q 000737 1249 CLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSINSHSWR 1301 (1322)
Q Consensus 1249 ~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~~~~~~ 1301 (1322)
=-.+..|-.-|..||+. .|..+..-|.+|.++.+.-...
T Consensus 377 -------------lAsvR~L~~WLaEe~~~-lr~~v~~Ll~~ll~~~~~~~~~ 415 (543)
T PF05536_consen 377 -------------LASVRVLGAWLAEETSA-LRKEVYGLLPFLLSLYRESFQE 415 (543)
T ss_pred -------------HHHHHHHHHHHHhChHH-HHHHHHHHHHHHHHHHhhhhhh
Confidence 00122233324456655 7777778888877776665443
No 188
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=62.30 E-value=2.5e+02 Score=31.55 Aligned_cols=213 Identities=13% Similarity=0.051 Sum_probs=0.0
Q ss_pred HHHHhhhhccCCCCCCCChHHHHHHHHHHHHHHh-CcHHHH-HHHHhcCCCCchhhHHHhHHHHHHHHhhhCChhHHHHH
Q 000737 907 LTLQLGSCHGLASSGQHEPLRAILTSFQAFCECV-GDLEMR-KILARDGEQNDKEKWINLIGDVAGCVSIKRPKEVQTIC 984 (1322)
Q Consensus 907 LL~ql~~~~~l~~~~~~~P~~~aleAlk~ll~~~-g~~~~~-~~Le~~~~w~~~~~~~~GV~lLar~l~~~~~~~~~~il 984 (1322)
||.-+-|- .......+.....++++..+.... .+-..+ ..+..-..-.+.+.+.-+..++++...+..- .++.+-
T Consensus 1 ll~~L~~~--l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r-~f~~L~ 77 (234)
T PF12530_consen 1 LLPLLLYK--LGKISDPELQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDR-HFPFLQ 77 (234)
T ss_pred ChHHHHHH--hcCCCChHHHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCch-HHHHHH
Q ss_pred HHHHh---------hhcccCccchHHHHHHHHHHhhcCCchhchHHHHHHHHHhhc-CCCChhHHhhhhhcccCCCchhH
Q 000737 985 LILTK---------SINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHV-SDESPTVRGLCLRGLVQIPSIHI 1054 (1322)
Q Consensus 985 ~~l~~---------~l~s~~~~~Ri~a~aflsEll~~~~~~~~ll~~~~~~L~~~l-~D~~~~VR~lalrGLg~l~~~~v 1054 (1322)
..+.. .-.+......++.++..-++....+. ....++..+..-+ ++.++.++.+|+++|..+...++
T Consensus 78 ~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~---~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~v 154 (234)
T PF12530_consen 78 PLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD---HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEV 154 (234)
T ss_pred HHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh---hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhh
Q ss_pred hhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHh--ccCCcccchhhHHhHHHHhccccccCC-------hhHHHHHHHH
Q 000737 1055 HQYATQVLSVILALLDDLDESVQLTAVSCLLTIL--KSSSKDAVEPILLNLSVRLRNLQVSMN-------VKMRRNAFAA 1125 (1322)
Q Consensus 1055 ~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll--~~l~~~~~~~~l~~l~~~lrpffede~-------~~vR~aAi~l 1125 (1322)
-.+.+. ..++..-|+....+.+..++..|-.++ ...+.+....+-.++...+..+-.+.+ ..+|.+|+..
T Consensus 155 vd~~s~-w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~~~~~~~~~~~~~a~~a 233 (234)
T PF12530_consen 155 VDFYSA-WKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDVNVASQWTSVRLAAFEA 233 (234)
T ss_pred ccHHHH-HHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccccchHHHHHHHHHHHHhc
Q ss_pred H
Q 000737 1126 F 1126 (1322)
Q Consensus 1126 f 1126 (1322)
+
T Consensus 234 l 234 (234)
T PF12530_consen 234 L 234 (234)
T ss_pred C
No 189
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.85 E-value=33 Score=41.04 Aligned_cols=110 Identities=15% Similarity=0.184 Sum_probs=92.8
Q ss_pred HHHHHhhcCCCChhHHhhhhhcccCCCc---hhHhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhH
Q 000737 1024 VEALCRHVSDESPTVRGLCLRGLVQIPS---IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPIL 1100 (1322)
Q Consensus 1024 ~~~L~~~l~D~~~~VR~lalrGLg~l~~---~~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l 1100 (1322)
+.-|+..+++.|..||+=+++|+-.+-. .....+.-.++..+....-|.+..|+-.+...+..++.....+.++++.
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~ 139 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMV 139 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchH
Confidence 4456777899999999999999986643 3444444567888888888888899999999999988887777799999
Q ss_pred HhHHHHhccccccCChhHHHHHHHHHHHHhhcc
Q 000737 1101 LNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFG 1133 (1322)
Q Consensus 1101 ~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~ 1133 (1322)
.-++..+..-+.+-.+++|.-|+--+--|+...
T Consensus 140 ~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~ 172 (393)
T KOG2149|consen 140 SLLMPYISSAMTHITPEIQEDSLKFLSLLLERY 172 (393)
T ss_pred HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHc
Confidence 999999999999999999999999999888754
No 190
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.42 E-value=5.5e+02 Score=34.61 Aligned_cols=305 Identities=15% Similarity=0.187 Sum_probs=153.3
Q ss_pred HHhhhC-ChhHHHHHHHHHhhhc------ccCccch-----HHHHHHHHHHhhcCCchhchHHH-HHHHHHhhcCCCChh
Q 000737 971 CVSIKR-PKEVQTICLILTKSIN------RQQRFQR-----EAAAAALSEFVRYSGGFDSLLEQ-MVEALCRHVSDESPT 1037 (1322)
Q Consensus 971 ~l~~~~-~~~~~~il~~l~~~l~------s~~~~~R-----i~a~aflsEll~~~~~~~~ll~~-~~~~L~~~l~D~~~~ 1037 (1322)
.++.++ ...+++++.++...++ .++...| .-+++.+.+.|.....-...++. +++.+.=-+++|-.-
T Consensus 398 ~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~ 477 (1010)
T KOG1991|consen 398 TLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGY 477 (1010)
T ss_pred HHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhH
Confidence 445566 5578999999999888 5555555 22233334555443222233444 556666667888888
Q ss_pred HHhhhhhcccCCCc---hhHhhhHhHHHHHHHhhcc-cCChHHHHHHHHHHHHHhccCCc--------------------
Q 000737 1038 VRGLCLRGLVQIPS---IHIHQYATQVLSVILALLD-DLDESVQLTAVSCLLTILKSSSK-------------------- 1093 (1322)
Q Consensus 1038 VR~lalrGLg~l~~---~~v~~~~~~lL~all~~L~-d~d~~V~leam~~L~~ll~~l~~-------------------- 1093 (1322)
.|.-|.--++..+. .+- ....+++.+..++|. |.+-+|..+|..||+.++.....
T Consensus 478 Lrarac~vl~~~~~~df~d~-~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ 556 (1010)
T KOG1991|consen 478 LRARACWVLSQFSSIDFKDP-NNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLS 556 (1010)
T ss_pred HHHHHHHHHHHHHhccCCCh-HHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHH
Confidence 88877777776663 121 223446777777777 55556777777777777654331
Q ss_pred --------------------ccchhhHHhHHHHhcccc-------ccCChhHHHHHHHHHHHHhhc----cCCcchHhHH
Q 000737 1094 --------------------DAVEPILLNLSVRLRNLQ-------VSMNVKMRRNAFAAFGALSNF----GVGSQREAFL 1142 (1322)
Q Consensus 1094 --------------------~~~~~~l~~l~~~lrpff-------ede~~~vR~aAi~lfG~L~~~----~~~~~~~~~~ 1142 (1322)
+.+.||-..+|.+|..-| +++++..-..|+.+.|=|-.. ..-+...-..
T Consensus 557 ne~End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl 636 (1010)
T KOG1991|consen 557 NEVENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVL 636 (1010)
T ss_pred HhcchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 123444555555553322 123333333344444433321 0112223355
Q ss_pred HHHHHhHHHHHHhccCCChh-HHHHH-H------HHHHhhcchhhh----hhhhhhccccCCCCCCCCh-HHHHHHHHHH
Q 000737 1143 EQIHAMLPRLILHIYDDDLS-VRQAC-R------NTLKQVAPFMEI----GVYGIFNSHCFNSDHRSDY-ETFVRDLTRQ 1209 (1322)
Q Consensus 1143 eqv~~~LvpLLlHL~D~~~~-V~~ac-k------~tL~~~a~~L~~----~l~~lf~~~~~~~~~~l~~-~~f~~~~~k~ 1209 (1322)
.|+...+.|.+-|.-+.+.. +-..| - +....++|.+ | .+-++|++. | ..| .+++--+-.+
T Consensus 637 ~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~m-W~ll~li~e~~~~~----~--~dyf~d~~~~l~N~ 709 (1010)
T KOG1991|consen 637 KQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIM-WGLLELILEVFQDD----G--IDYFTDMMPALHNY 709 (1010)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHH-HHHHHHHHHHHhhh----h--HHHHHHHHHHHhhh
Confidence 66666666666665554432 22222 1 1122244432 3 224444442 2 333 1121111111
Q ss_pred ------HHHhCcchHHHHHHHHHhhhcC---CChhhHHHHHHHHHHhcccCchhhhhhccHHHHHHHHHHHhcc-CCChH
Q 000737 1210 ------FVQHFPSRIDSYMGSTIQAFEA---PWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQ-SADAI 1279 (1322)
Q Consensus 1210 ------L~~~~~~~~~~~l~~~l~ylkS---~~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~-Dpdp~ 1279 (1322)
-..++|++....+.-+-..+-| ...+++. |+.+++.++.++.. .+.+ ..+-..+.-..++++ +....
T Consensus 710 vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~-a~kLle~iiL~~kg-~~dq-~iplf~~~a~~~l~~~~e~s~ 786 (1010)
T KOG1991|consen 710 VTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDSDCES-ACKLLEVIILNCKG-LLDQ-YIPLFLELALSRLTREVETSE 786 (1010)
T ss_pred eeeCchhhhccchHHHHHHHHHHHHHcCCCCchHHHHH-HHHHHHHHHHHhcC-cHhh-HhHHHHHHHHHHHhccccchH
Confidence 1356676666665555555555 2344444 78888888865543 1111 122222222222444 67777
Q ss_pred HHHHHHH
Q 000737 1280 VRATCSS 1286 (1322)
Q Consensus 1280 VR~~Aa~ 1286 (1322)
.|..+-+
T Consensus 787 ~~~~~le 793 (1010)
T KOG1991|consen 787 LRVMLLE 793 (1010)
T ss_pred HHHHHHH
Confidence 7776543
No 191
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=58.59 E-value=31 Score=37.29 Aligned_cols=83 Identities=10% Similarity=0.027 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhhHHHHHHHHHHhcccCchhhhhhccHHHHHHHHHHHhccCCChHHHH
Q 000737 1203 VRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRA 1282 (1322)
Q Consensus 1203 ~~~~~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~ 1282 (1322)
...+|..+...++.....+ .....+.+|+.+-+|++|..+....... ..+.+.++..+.. ++.|++..||.
T Consensus 89 ~D~~~~~~~~~~~~~~~~~-~~~~~w~~s~~~~~rR~~~~~~~~~~~~-------~~~~~~~l~~~~~-~~~d~~~~Vqk 159 (197)
T cd06561 89 VDSLCANLLGKLLYAEPEL-DLLEEWAKSENEWVRRAAIVLLLRLIKK-------ETDFDLLLEIIER-LLHDEEYFVQK 159 (197)
T ss_pred HHHHHHHHHHHHHhcCcch-HHHHHHHhCCcHHHHHHHHHHHHHHHHh-------cccHHHHHHHHHH-hCCCHHHHHHH
Confidence 3444555555444333323 5567799999999999987665444332 1345777777766 89999999999
Q ss_pred HHHHHHHHHHHH
Q 000737 1283 TCSSSLGWLLKS 1294 (1322)
Q Consensus 1283 ~Aa~aL~~l~k~ 1294 (1322)
..+-+|..+++.
T Consensus 160 av~w~L~~~~~~ 171 (197)
T cd06561 160 AVGWALREYGKK 171 (197)
T ss_pred HHHHHHHHHHhh
Confidence 999999988876
No 192
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=57.38 E-value=61 Score=34.26 Aligned_cols=74 Identities=20% Similarity=0.279 Sum_probs=45.2
Q ss_pred hHhHHHHHHHhhcccCC-hHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhh
Q 000737 1057 YATQVLSVILALLDDLD-ESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN 1131 (1322)
Q Consensus 1057 ~~~~lL~all~~L~d~d-~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~ 1131 (1322)
|...++.+++.-|.|+. ..---.++.++-.|+..++.+- .+|+.++...+-.-+..-.+..|..-+.-++.|.+
T Consensus 83 y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 83 YPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 33445666777666653 1222245556666666655544 67777777766666666666777777777776665
No 193
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=57.03 E-value=13 Score=30.11 Aligned_cols=28 Identities=14% Similarity=0.086 Sum_probs=23.1
Q ss_pred cHHHHHHHHHHHhccCCChHHHHHHHHHH
Q 000737 1260 FYTQVFGLLVVKLSQSADAIVRATCSSSL 1288 (1322)
Q Consensus 1260 ~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL 1288 (1322)
+.+.+.+++.. -+.|++|.||..|-+.+
T Consensus 15 ~~~~v~~~i~~-rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 15 DSSDVQSAIIR-RLSDSSPSVREAAVDLL 42 (42)
T ss_pred chHHHHHHHHH-HhcCCChHHHHHHHHHC
Confidence 45678888888 58999999999998753
No 194
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=56.72 E-value=81 Score=38.11 Aligned_cols=109 Identities=17% Similarity=0.167 Sum_probs=79.3
Q ss_pred HHHHHHhhhcccCccchHHHHHHHHHHhhcCCc-----hhchHHHHHHHHHh-hcCCCChhHHhhhhhcccCCCc---hh
Q 000737 983 ICLILTKSINRQQRFQREAAAAALSEFVRYSGG-----FDSLLEQMVEALCR-HVSDESPTVRGLCLRGLVQIPS---IH 1053 (1322)
Q Consensus 983 il~~l~~~l~s~~~~~Ri~a~aflsEll~~~~~-----~~~ll~~~~~~L~~-~l~D~~~~VR~lalrGLg~l~~---~~ 1053 (1322)
++.++...+.|.+-.--.++..+++.|.+.-.- ....++.++..|.+ .-.|.|..+.++++-+|-|+.. +|
T Consensus 316 ~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nk 395 (604)
T KOG4500|consen 316 FLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNK 395 (604)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCch
Confidence 666666777777766667777888888774211 23344556666666 6678899999999999999875 34
Q ss_pred HhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccC
Q 000737 1054 IHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSS 1091 (1322)
Q Consensus 1054 v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l 1091 (1322)
.+-...-+..+++..+.-..++|+-.-+.+|+.+.+..
T Consensus 396 a~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~q 433 (604)
T KOG4500|consen 396 AHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQ 433 (604)
T ss_pred hhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhch
Confidence 33344456778888888888899999999999888654
No 195
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.13 E-value=4.4e+02 Score=37.94 Aligned_cols=187 Identities=12% Similarity=0.133 Sum_probs=112.7
Q ss_pred hHHHHHHHHHhhhcc-cCccchHHHHHHHH--HHhh------cCC-----chhchHHHHHHHHHhhcCCCChhHHhhhhh
Q 000737 979 EVQTICLILTKSINR-QQRFQREAAAAALS--EFVR------YSG-----GFDSLLEQMVEALCRHVSDESPTVRGLCLR 1044 (1322)
Q Consensus 979 ~~~~il~~l~~~l~s-~~~~~Ri~a~afls--Ell~------~~~-----~~~~ll~~~~~~L~~~l~D~~~~VR~lalr 1044 (1322)
+.-.|++++.-...+ ...+++.+.+.+++ ++.. ... +...+.......+.+.+..++|..|-.+..
T Consensus 819 ~~~~ile~~~esi~~sk~~r~qsV~~~a~t~~al~s~lk~l~e~~~~~~lg~e~v~~~~~~l~~~sl~~~~p~~rc~~~e 898 (2067)
T KOG1822|consen 819 IRLSILEHFPESIKQSKSARQQSVQVNAVTWQALLSALKYLAEFKGATSLGPEEVRSSALTLIVNSLINPNPKLRCAAAE 898 (2067)
T ss_pred HHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhhhhccCChHHHHHHHH
Confidence 334455554433333 33367777776666 4332 111 122333445666778889999999999999
Q ss_pred cccCCCc-hhHhhhHhHHHHHHHhhcccCChHH-HHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccC-ChhHHHH
Q 000737 1045 GLVQIPS-IHIHQYATQVLSVILALLDDLDESV-QLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSM-NVKMRRN 1121 (1322)
Q Consensus 1045 GLg~l~~-~~v~~~~~~lL~all~~L~d~d~~V-~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede-~~~vR~a 1121 (1322)
++|.++. ..-..+...+..-+++.|-+.++.| +..-..+|+.|....+.-+-+..+.+=...+..+-.|. .+.|+..
T Consensus 899 a~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~illal~~Ds~~p~Vqtw 978 (2067)
T KOG1822|consen 899 ALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSILLALATDSTSPVVQTW 978 (2067)
T ss_pred HHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHHHHHHhhcCCCchhhhh
Confidence 9998875 1112233445555666666655443 34445667777665554443333333222333444444 4599999
Q ss_pred HHHHHHHHhhccCCcchHhHHHHHHHhHHHHHHhccCCChhHHHH
Q 000737 1122 AFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQA 1166 (1322)
Q Consensus 1122 Ai~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~a 1166 (1322)
|..+..-++..+ ++-...+.++.+..+..|++--.+...+|++.
T Consensus 979 SL~al~~i~~s~-~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~ 1022 (2067)
T KOG1822|consen 979 SLHALALILDSS-GPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQC 1022 (2067)
T ss_pred HHHHHHHHHcCC-CceehhhHHHHHHHHHHHcCCCCcchhhhhhh
Confidence 999988877633 45557778888888888888766766677664
No 196
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=55.82 E-value=5.8e+02 Score=37.31 Aligned_cols=165 Identities=14% Similarity=0.086 Sum_probs=92.1
Q ss_pred ccCccchHHHHHHHHHHhhcCCc-hhchHHHHHHHHHhhcCCCChhHHhhhhhcccCCCchhHh-------hhHhHHHHH
Q 000737 993 RQQRFQREAAAAALSEFVRYSGG-FDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIH-------QYATQVLSV 1064 (1322)
Q Consensus 993 s~~~~~Ri~a~aflsEll~~~~~-~~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~~~v~-------~~~~~lL~a 1064 (1322)
+....-|-..+-.+.+++..... ...=-+.++.++.....|+++.+-.+|-..+..+..+... .-...++.|
T Consensus 1194 s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~c 1273 (1780)
T PLN03076 1194 SNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNC 1273 (1780)
T ss_pred cCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHH
Confidence 44445555555566666654332 1122256777888778888877766666655544321111 112234444
Q ss_pred HHhhcccC-ChHHHHHHHHHHHHHhccCC-----------------------------------cccchhhHHhHHHHhc
Q 000737 1065 ILALLDDL-DESVQLTAVSCLLTILKSSS-----------------------------------KDAVEPILLNLSVRLR 1108 (1322)
Q Consensus 1065 ll~~L~d~-d~~V~leam~~L~~ll~~l~-----------------------------------~~~~~~~l~~l~~~lr 1108 (1322)
+.+.-... +.++-+.|+.-|..+...+- .++...+-.-+...+.
T Consensus 1274 L~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls 1353 (1780)
T PLN03076 1274 LIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLS 1353 (1780)
T ss_pred HHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHH
Confidence 44333222 35688888888886632220 0011123444555555
Q ss_pred cccccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHH-hHHHHHHhcc
Q 000737 1109 NLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHA-MLPRLILHIY 1157 (1322)
Q Consensus 1109 pffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~-~LvpLLlHL~ 1157 (1322)
..-.|++.+||..|+..|=++...-+......+-+.+++ .|.|++-+++
T Consensus 1354 ~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~ 1403 (1780)
T PLN03076 1354 ELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVR 1403 (1780)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 566689999999999866555553333444457777776 5677765543
No 197
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.22 E-value=1.1e+02 Score=39.60 Aligned_cols=272 Identities=14% Similarity=0.156 Sum_probs=142.5
Q ss_pred HHHHHHHhhcCCC-ChhHHhhhhhcccCCCchhHhhhHhHHHHHHHhhccc--CChHHHHHHHHHHHHHhccCC------
Q 000737 1022 QMVEALCRHVSDE-SPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDD--LDESVQLTAVSCLLTILKSSS------ 1092 (1322)
Q Consensus 1022 ~~~~~L~~~l~D~-~~~VR~lalrGLg~l~~~~v~~~~~~lL~all~~L~d--~d~~V~leam~~L~~ll~~l~------ 1092 (1322)
..+..|+.++... =+.=|+-|+|||-.++.+=-..-..+-|++++..|.- .|++++.-++.++-.++.+=+
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~d 101 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMD 101 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcc
Confidence 3566777777543 4556999999998887411011123347778888765 357777777777777775432
Q ss_pred ccc-chhhHHhHHHHh----------ccccccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHHhccCCCh
Q 000737 1093 KDA-VEPILLNLSVRL----------RNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDL 1161 (1322)
Q Consensus 1093 ~~~-~~~~l~~l~~~l----------rpffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~ 1161 (1322)
... ...+-..++... ..+.+..+..||..||.||.++.+-.+.+..+.+... -.++-.++--|.|...
T Consensus 102 ds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~-P~gIS~lmdlL~DsrE 180 (970)
T KOG0946|consen 102 DSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVS-PMGISKLMDLLRDSRE 180 (970)
T ss_pred cchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHC-chhHHHHHHHHhhhhh
Confidence 111 223333333322 4677889999999999999999984333333332211 1233444445567666
Q ss_pred hHHHHHHHHHHhhcchhhh--h-------hhhhhccccCCCCCCCChHHHHHHHHH---HHHHhCcchHHHHHHH-----
Q 000737 1162 SVRQACRNTLKQVAPFMEI--G-------VYGIFNSHCFNSDHRSDYETFVRDLTR---QFVQHFPSRIDSYMGS----- 1224 (1322)
Q Consensus 1162 ~V~~ack~tL~~~a~~L~~--~-------l~~lf~~~~~~~~~~l~~~~f~~~~~k---~L~~~~~~~~~~~l~~----- 1224 (1322)
-||-.+-.=|..+..--.. + ...+|.- .++.++++-+..+.|... .|.+.+-..-++|...
T Consensus 181 ~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsI--IeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~r 258 (970)
T KOG0946|consen 181 PIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSI--IEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPR 258 (970)
T ss_pred hhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHH--HHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHH
Confidence 6776665555443321110 1 1122221 222234444445555322 2334444444444321
Q ss_pred H------HhhhcC---CChhhHHHHHHHHHHhcccC-c--------hhhhhhccHHHHHHHHHHHhc-cCCChHHHHHHH
Q 000737 1225 T------IQAFEA---PWPIIQANAIYFSSSILCLC-D--------DQHILSLFYTQVFGLLVVKLS-QSADAIVRATCS 1285 (1322)
Q Consensus 1225 ~------l~ylkS---~~~~IR~aA~~fiG~l~~~l-~--------~~~~~~~~~e~l~~~L~~~Ll-~Dpdp~VR~~Aa 1285 (1322)
. ..|-+. -|..=|-+-+.++=++++.+ + .+.-..+....++..|...+. .+--..|+.-+-
T Consensus 259 L~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesi 338 (970)
T KOG0946|consen 259 LLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESI 338 (970)
T ss_pred HHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHH
Confidence 1 112222 57777777777776666522 1 111112334444555554222 233456777777
Q ss_pred HHHHHHHHHhc
Q 000737 1286 SSLGWLLKSIN 1296 (1322)
Q Consensus 1286 ~aL~~l~k~~~ 1296 (1322)
-|.....+.+.
T Consensus 339 itvAevVRgn~ 349 (970)
T KOG0946|consen 339 ITVAEVVRGNA 349 (970)
T ss_pred HHHHHHHHhch
Confidence 77666665443
No 198
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=53.63 E-value=1.3e+02 Score=32.83 Aligned_cols=156 Identities=9% Similarity=-0.017 Sum_probs=82.0
Q ss_pred cccccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHHhccCCChhHHHHHHHHHHhhcchhhh----hhhh
Q 000737 1109 NLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI----GVYG 1184 (1322)
Q Consensus 1109 pffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~~----~l~~ 1184 (1322)
|+++=..+.+|..|=..+-++... ++.....-. -.+++.-+.+-.+-..+......... .+..
T Consensus 26 ~~~GV~~p~lr~lak~~~~~~~~~----------~~~~~l~~~---L~~~~~~E~~~la~~il~~~~~~~~~~~~~~~~~ 92 (213)
T PF08713_consen 26 PFLGVRTPDLRKLAKDIYKELKLS----------EELYELADE---LWESGYREERYLALLILDKRRKKLTEEDLELLEK 92 (213)
T ss_dssp B-----HHHHHHHHHHHHHHHCTS----------HHHHHHHHH---HHCSSCHHHHHHHHHHHHHCGGG--HHHHHHHHH
T ss_pred cccCcCcHHHHHHHHHHHhhcccc----------hHHHHHHHH---HcCCchHHHHHHHHHHhHHHhhhhhHHHHHHHHH
Confidence 455555566666666655554331 111111111 12345566666666666555554432 2222
Q ss_pred hhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhhHHHHHHHHHHhcccCchhhhhhccHHHH
Q 000737 1185 IFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQV 1264 (1322)
Q Consensus 1185 lf~~~~~~~~~~l~~~~f~~~~~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l 1264 (1322)
.+.. .+.=+....+|..+..........+......+.+|+.+-+|++|....-..+. . .+.+.+
T Consensus 93 ~~~~--------~~~W~~~D~~~~~~~~~~~~~~~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~---~-----~~~~~~ 156 (213)
T PF08713_consen 93 WLPD--------IDNWATCDSLCSKLLGPLLKKHPEALELLEKWAKSDNEWVRRAAIVMLLRYIR---K-----EDFDEL 156 (213)
T ss_dssp CCCC--------CCCHHHHHHHTHHHHHHHHHHHGGHHHHHHHHHHCSSHHHHHHHHHCTTTHGG---G-----CHHHHH
T ss_pred Hhcc--------CCcchhhhHHHHHHHHHHHHhhHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH---h-----cCHHHH
Confidence 2221 11122334444444444322224456666779999999999988743211111 1 345677
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHHHH
Q 000737 1265 FGLLVVKLSQSADAIVRATCSSSLGWLLKS 1294 (1322)
Q Consensus 1265 ~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~ 1294 (1322)
+..+.. +.+||+..||...+=+|..+++.
T Consensus 157 l~~~~~-~~~d~~~~vq~ai~w~L~~~~~~ 185 (213)
T PF08713_consen 157 LEIIEA-LLKDEEYYVQKAIGWALREIGKK 185 (213)
T ss_dssp HHHHHH-CTTGS-HHHHHHHHHHHHHHCTT
T ss_pred HHHHHH-HcCCchHHHHHHHHHHHHHHHHh
Confidence 777776 78999999999999888877644
No 199
>PRK14707 hypothetical protein; Provisional
Probab=53.54 E-value=1e+03 Score=35.25 Aligned_cols=338 Identities=12% Similarity=0.025 Sum_probs=181.8
Q ss_pred ChHHHHHHHHHHHHHH-------hCcHHHHHHHHhcCCCCchhhHHHhHHHHHHHHhhh-------CChhHHHHHHHHHh
Q 000737 924 EPLRAILTSFQAFCEC-------VGDLEMRKILARDGEQNDKEKWINLIGDVAGCVSIK-------RPKEVQTICLILTK 989 (1322)
Q Consensus 924 ~P~~~aleAlk~ll~~-------~g~~~~~~~Le~~~~w~~~~~~~~GV~lLar~l~~~-------~~~~~~~il~~l~~ 989 (1322)
..|+.+..+|=.-+.+ -.-+++.+.|.-...|-+.+.-..++..||+.++.. +++.+...++.|.+
T Consensus 893 ~~C~~AA~aLA~rL~~d~~Lrqal~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa~d~~Lr~Aln~Q~lsNtLNALSK 972 (2710)
T PRK14707 893 PVCAAAASALAERLADEPELRKALSAHRVATALNALSKWPDIPVCATAASALAERLSDDPDLREALDASNLPQVLNALSK 972 (2710)
T ss_pred HHHHHHHHHHHHHHhcCHHHHhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHhccChhhhhhccHHHHHHHHhhhcc
Confidence 4577777766554422 345556666666679988888888999999988743 34567777777777
Q ss_pred hhcccCccchHHHHHHHHHHhhcCCchh----chHHHHHHHHHhhcCCCChhHHhhhhhcccCCCc--hhHhhhHhHHHH
Q 000737 990 SINRQQRFQREAAAAALSEFVRYSGGFD----SLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS--IHIHQYATQVLS 1063 (1322)
Q Consensus 990 ~l~s~~~~~Ri~a~aflsEll~~~~~~~----~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~--~~v~~~~~~lL~ 1063 (1322)
- -..+..|.+|.+.-..|.+.+.... --+-.++|.|.+|-. .+.-|..+.+=-+.++. ..-+.+..+-+.
T Consensus 973 W--Pd~~~c~~AA~aLA~rL~~~~~LR~al~aQ~vAN~LNALSKWPd--~~~Cr~AA~~LA~rLa~ep~L~~amdaQ~la 1048 (2710)
T PRK14707 973 W--PDVPAGGEVVDALAERLVDEPALRNALDPIGMANALNALSKWLQ--MPVCAATVEALAARLSNDPGLCKALSSQGLT 1048 (2710)
T ss_pred C--CCchHHHHHHHHHHHHHhccHHHHhhcchHHHHHHHhhhhcCCC--chHHHHHHHHHHHHhccCHhhhhhcchHHHH
Confidence 6 2334455666666566655543321 122336677777753 23334444333334443 122334445566
Q ss_pred HHHhhccc-CChHHHHHHHHHHHHHh-------ccCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccCC
Q 000737 1064 VILALLDD-LDESVQLTAVSCLLTIL-------KSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVG 1135 (1322)
Q Consensus 1064 all~~L~d-~d~~V~leam~~L~~ll-------~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~ 1135 (1322)
..+++|.. ++++.-..|...|..-| ..++.+++...+-.++. . -+.+.-|.+|..+-+.|+. .+
T Consensus 1049 n~LNALSKWPde~~Cr~Aa~aLA~rL~~d~~Lr~Al~aQ~vAN~LNaLSK----W--P~~~~Cr~Aa~~LA~rL~~--~~ 1120 (2710)
T PRK14707 1049 TVLNALCKWPEMPVCLAAASALAERLSDDLVLRNALDSQGFGNALNALSK----W--PDSPVCAAAASALAKRLTD--DA 1120 (2710)
T ss_pred HHHHhhccCCCchhHHHHHHHHHHHhhccHHHHHhhchHHHHHHHHHHhc----C--CCcHHHHHHHHHHHHHhcc--cc
Confidence 66666665 34444444444444422 23555555554443322 1 2456778888888888865 22
Q ss_pred cchHhHHHH-HHHhHHHHHHhccCCChhHHHHHHHHHHhhcchhhh--hhhhhhccccCCCCCCCChHHHHHHHHHHHHH
Q 000737 1136 SQREAFLEQ-IHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI--GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQ 1212 (1322)
Q Consensus 1136 ~~~~~~~eq-v~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~~--~l~~lf~~~~~~~~~~l~~~~f~~~~~k~L~~ 1212 (1322)
.....|-.| |-+.+--|- ..-+++ .|+.+-..+|.-|.+ .+..-++
T Consensus 1121 ~l~~~fd~q~vA~~LNALS-KWp~~~-----~cr~Aa~~LA~RL~~d~~Lr~a~~------------------------- 1169 (2710)
T PRK14707 1121 GLRHVFDPINVSQALNALS-KWPGTQ-----ACESAIDVLAATLANAPGLRNALS------------------------- 1169 (2710)
T ss_pred chhccCCHHHHHHHHHHHh-cCCCch-----HHHHHHHHHHHHhccchhhhhhcC-------------------------
Confidence 333344333 222222222 122221 344433333322211 2221111
Q ss_pred hCcchHHHHHHHHHhhhcCCCh-hhHHHHHHHHHHhcc-cCchhhhhhccHHHHHHHHHHHhccCCChHHHHHHHHHHHH
Q 000737 1213 HFPSRIDSYMGSTIQAFEAPWP-IIQANAIYFSSSILC-LCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGW 1290 (1322)
Q Consensus 1213 ~~~~~~~~~l~~~l~ylkS~~~-~IR~aA~~fiG~l~~-~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~ 1290 (1322)
|..+-.-+ -.+-|=|.. .-|+++..+++.+.. ..+-....+.+..++-+++-. +..+.+...-..++-+...
T Consensus 1170 --~Q~vAn~L---NaLSKWp~~~ac~~A~~~La~rlG~a~~P~r~F~m~~lAqiaNa~sR-l~~~~~ed~~~~~~~a~~~ 1243 (2710)
T PRK14707 1170 --AQGVAIAL---NALSKCLARPVCRSAFVLLAERAGSAELPWRQFEMRGIAVVANAMSR-LSPLDEEDDEQFRTLAVAK 1243 (2710)
T ss_pred --HHHHHHHH---HHhhcCcCcHHHHHHHHHHHHhhcCCCCCchhcCHHHHHHHHHHHHH-hhhcccchhHHHHHHHHHH
Confidence 11111111 224444443 456666666666654 445455555677889999877 5544444443444666679
Q ss_pred HHHHhccccccccccccccc
Q 000737 1291 LLKSINSHSWRSTRLERVES 1310 (1322)
Q Consensus 1291 l~k~~~~~~~~~~~~~~~~~ 1310 (1322)
|++-..+.--+..||+.+|.
T Consensus 1244 L~~LA~HL~l~~erfe~A~~ 1263 (2710)
T PRK14707 1244 LQAMAGHLDLHRELFASASV 1263 (2710)
T ss_pred HHHHHHHHhhcHHHHhhccc
Confidence 99999999888888888764
No 200
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=52.11 E-value=5.3e+02 Score=31.61 Aligned_cols=161 Identities=14% Similarity=0.092 Sum_probs=99.3
Q ss_pred HHHHhccccccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHH--hccCCChhHHHHHHHHHHhhcchhhh
Q 000737 1103 LSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLIL--HIYDDDLSVRQACRNTLKQVAPFMEI 1180 (1322)
Q Consensus 1103 l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLl--HL~D~~~~V~~ack~tL~~~a~~L~~ 1180 (1322)
+..++.+.|...+...-.++.-+.|..++ .+.-+...+..++++-|+.++. |-.|.|..+.-||-.||+..+.-.-.
T Consensus 316 ~l~~~~sw~~S~d~~l~t~g~LaigNfaR-~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~n 394 (604)
T KOG4500|consen 316 FLDFLESWFRSDDSNLITMGSLAIGNFAR-RDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSN 394 (604)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhhhc-cchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCc
Confidence 44566789999999999999999999998 3344566667789999998887 67777888889999999987642111
Q ss_pred hhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhhHHHHHHHHHHhcccCchhhhhhcc
Q 000737 1181 GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLF 1260 (1322)
Q Consensus 1181 ~l~~lf~~~~~~~~~~l~~~~f~~~~~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~~~~~~~~~ 1260 (1322)
+- .+ ...| ....+...+..+.|. +.+-+..++..+.+.++.+-. .+. +
T Consensus 395 ka-~~-----~~aG-------vteaIL~~lk~~~pp-v~fkllgTlrM~~d~qe~~a~-------eL~-----------k 442 (604)
T KOG4500|consen 395 KA-HF-----APAG-------VTEAILLQLKLASPP-VTFKLLGTLRMIRDSQEYIAC-------ELA-----------K 442 (604)
T ss_pred hh-hc-----cccc-------hHHHHHHHHHhcCCc-chHHHHHHHHHHHhchHHHHH-------HHh-----------c
Confidence 10 11 1112 233344433333332 233333334444444443211 111 1
Q ss_pred HHHHHHHHHHHhccCCChH-HHHHHHHHHHHHHHHhcc
Q 000737 1261 YTQVFGLLVVKLSQSADAI-VRATCSSSLGWLLKSINS 1297 (1322)
Q Consensus 1261 ~e~l~~~L~~~Ll~Dpdp~-VR~~Aa~aL~~l~k~~~~ 1297 (1322)
-..++.-|.+ ..+.||-. |---.-+.|.-|.|.+++
T Consensus 443 n~~l~ekLv~-Wsks~D~aGv~gESnRll~~lIkHs~~ 479 (604)
T KOG4500|consen 443 NPELFEKLVD-WSKSPDFAGVAGESNRLLLGLIKHSKY 479 (604)
T ss_pred CHHHHHHHHH-hhhCCccchhhhhhhHHHHHHHHhhHh
Confidence 2345566777 77778766 766677777777777665
No 201
>PF05536 Neurochondrin: Neurochondrin
Probab=52.09 E-value=4.3e+02 Score=33.78 Aligned_cols=145 Identities=14% Similarity=0.120 Sum_probs=86.8
Q ss_pred HHHHHHHHhhhcccCccchHHHHHHHHHHhhcCCch----hchHHH----HHHHHHhhcCC----CChhHHhhhhhcccC
Q 000737 981 QTICLILTKSINRQQRFQREAAAAALSEFVRYSGGF----DSLLEQ----MVEALCRHVSD----ESPTVRGLCLRGLVQ 1048 (1322)
Q Consensus 981 ~~il~~l~~~l~s~~~~~Ri~a~aflsEll~~~~~~----~~ll~~----~~~~L~~~l~D----~~~~VR~lalrGLg~ 1048 (1322)
.+.+......|++..+.+|.+|.+.++.++...... +.+.+. .++.|.+.-.- +....+.+|+-=|+.
T Consensus 4 ~~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~ 83 (543)
T PF05536_consen 4 SASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA 83 (543)
T ss_pred hHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence 345666778889999999999999999999864321 112233 44444443322 234556666655554
Q ss_pred CCc-hhHh--hhHhHHHHHHHhhcccCCh-HHHHHHHHHHHHHhccCCcccchhh-----HHhHHHHhccccccCChhHH
Q 000737 1049 IPS-IHIH--QYATQVLSVILALLDDLDE-SVQLTAVSCLLTILKSSSKDAVEPI-----LLNLSVRLRNLQVSMNVKMR 1119 (1322)
Q Consensus 1049 l~~-~~v~--~~~~~lL~all~~L~d~d~-~V~leam~~L~~ll~~l~~~~~~~~-----l~~l~~~lrpffede~~~vR 1119 (1322)
+.. +++. ...-.-+|.+++.+...++ .++-+++..|..|... ++|...+ +..++..+.. ++...
T Consensus 84 f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~--~~G~~aLl~~g~v~~L~ei~~~-----~~~~~ 156 (543)
T PF05536_consen 84 FCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASS--PEGAKALLESGAVPALCEIIPN-----QSFQM 156 (543)
T ss_pred HcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC--cHhHHHHHhcCCHHHHHHHHHh-----CcchH
Confidence 432 2221 1122236666666666566 8999999999999843 2222211 1122222222 66778
Q ss_pred HHHHHHHHHHhhc
Q 000737 1120 RNAFAAFGALSNF 1132 (1322)
Q Consensus 1120 ~aAi~lfG~L~~~ 1132 (1322)
..|+.++..+...
T Consensus 157 E~Al~lL~~Lls~ 169 (543)
T PF05536_consen 157 EIALNLLLNLLSR 169 (543)
T ss_pred HHHHHHHHHHHHh
Confidence 8899888888773
No 202
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=51.12 E-value=1.3e+02 Score=32.50 Aligned_cols=117 Identities=15% Similarity=0.162 Sum_probs=75.4
Q ss_pred ccccccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHHhccCCChhHHHHHHHHHHhhc----chhhh---
Q 000737 1108 RNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVA----PFMEI--- 1180 (1322)
Q Consensus 1108 rpffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a----~~L~~--- 1180 (1322)
..+.-+.+..+|.+|+.+.+-+.+.| ...| ..+++.|+--..|+++.++..|...+..+. .++..
T Consensus 14 l~~~~~~~~~vr~~Al~~l~~il~qG---LvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~~ 85 (187)
T PF12830_consen 14 LELCLSSDDSVRLAALQVLELILRQG---LVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRYS 85 (187)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHhcC---CCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 44677889999999999999999844 2334 246677777788999999999988776654 12221
Q ss_pred ---hhhhhhccccCCCCCCCC---hHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCC
Q 000737 1181 ---GVYGIFNSHCFNSDHRSD---YETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPW 1233 (1322)
Q Consensus 1181 ---~l~~lf~~~~~~~~~~l~---~~~f~~~~~k~L~~~~~~~~~~~l~~~l~ylkS~~ 1233 (1322)
+..--|++...++..+.. ...++..+...+. .....-..|+.+.+..|+...
T Consensus 86 ~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~-~~r~~R~~Fl~~l~k~f~~~~ 143 (187)
T PF12830_consen 86 EGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLR-SNRKSRRKFLKSLLKQFDFDL 143 (187)
T ss_pred HHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHh-cccHhHHHHHHHHHHHHHhhc
Confidence 222233333222221111 4556666665555 555666778888888877754
No 203
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=50.97 E-value=87 Score=40.26 Aligned_cols=109 Identities=17% Similarity=0.157 Sum_probs=83.1
Q ss_pred hHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccCCc
Q 000737 1057 YATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGS 1136 (1322)
Q Consensus 1057 ~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~ 1136 (1322)
....+||.++..+++.+-.+.-+++.++..+.+.+|...+...++--...+ +|...+..||..+.-.||.++...+
T Consensus 386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l--~~~tt~~~vkvn~L~c~~~l~q~lD-- 461 (700)
T KOG2137|consen 386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNL--AFKTTNLYVKVNVLPCLAGLIQRLD-- 461 (700)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcc--hhcccchHHHHHHHHHHHHHHHHHH--
Confidence 456799999999999888999999999999999998666553332222223 7888899999999999999996332
Q ss_pred chHhHHHHHHHhHHHHHHhccCCChhHHHHHHHHHHhh
Q 000737 1137 QREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQV 1174 (1322)
Q Consensus 1137 ~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~ 1174 (1322)
+ -+|..-+.|++...+=.+|.+...|-......
T Consensus 462 -~----~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l 494 (700)
T KOG2137|consen 462 -K----AAVLDELLPILKCIKTRDPAIVMGFLRIYEAL 494 (700)
T ss_pred -H----HHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 1 24556677888888888999988876655443
No 204
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=50.36 E-value=15 Score=29.67 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=21.6
Q ss_pred HHHHHHHHhhcCCCChhHHhhhhhc
Q 000737 1021 EQMVEALCRHVSDESPTVRGLCLRG 1045 (1322)
Q Consensus 1021 ~~~~~~L~~~l~D~~~~VR~lalrG 1045 (1322)
..+...+.+++.|++|.||..++.-
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 3578899999999999999998753
No 205
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=49.00 E-value=1.8e+02 Score=39.89 Aligned_cols=160 Identities=18% Similarity=0.166 Sum_probs=95.7
Q ss_pred chHHHHHHHHHhhcCCCChhHHhhhhhcccCCCc-------hhHhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhcc
Q 000737 1018 SLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS-------IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKS 1090 (1322)
Q Consensus 1018 ~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~-------~~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~ 1090 (1322)
.+...+++...+++.|.+-.||.-|...+..++. .++.+....+...+..+++ .. .-.-.-|..|.++...
T Consensus 204 ~~~~~vl~~~i~~L~ds~ddv~~~aa~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~ldd-l~-~s~~si~~ll~~l~~~ 281 (1549)
T KOG0392|consen 204 QLLNLVLDFVIEGLEDSDDDVRSVAAQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDD-LS-SSTASIMHLLDELCIE 281 (1549)
T ss_pred HHHHHHHHHHHhhhhhcchHHHHHHHHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhh-cc-hhhHHHHHHHHHHhhh
Confidence 3455678899999999999999999999988775 3444444444444444433 21 1122223344444322
Q ss_pred CCcccc---hhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccCCcc--hHh---------HHHHHHHhHHHHHHhc
Q 000737 1091 SSKDAV---EPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQ--REA---------FLEQIHAMLPRLILHI 1156 (1322)
Q Consensus 1091 l~~~~~---~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~--~~~---------~~eqv~~~LvpLLlHL 1156 (1322)
....++ -+.-..|+.++.||.-++=..+|.++....-.+.....+.. .-+ |..-++...++.|.|+
T Consensus 282 ~evl~l~~~~n~~~~Lvp~~~p~l~~~i~sv~~a~l~~l~~lle~~~qs~~~~~~~l~~~~r~ifq~ll~e~~~e~L~~~ 361 (1549)
T KOG0392|consen 282 NEVLDLFEQQNLEVGLVPRLWPFLRHTISSVRRAALETLAMLLEADDQSDSWQIRILGKLFRKIFQILLLESFNEILDLS 361 (1549)
T ss_pred HHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHHHHHHHhCCcHHHHHhh
Confidence 100000 01113577888999999999999999999999987544333 222 2222344456777777
Q ss_pred cCCChh----HHHHHHHHHHhhcchhh
Q 000737 1157 YDDDLS----VRQACRNTLKQVAPFME 1179 (1322)
Q Consensus 1157 ~D~~~~----V~~ack~tL~~~a~~L~ 1179 (1322)
.+--.. ++.+|.+.+.++.+.++
T Consensus 362 ~~~~v~v~~~~k~a~~~~~~~~~l~~~ 388 (1549)
T KOG0392|consen 362 EKVWVTVSKIEKTAAAYLLSWIYLLIQ 388 (1549)
T ss_pred hheeeehHHHHHHHHHHHHHHHHhhhC
Confidence 665432 24566666766665443
No 206
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=47.35 E-value=11 Score=27.23 Aligned_cols=27 Identities=30% Similarity=0.464 Sum_probs=19.6
Q ss_pred HHhhhhhcccCCCchhHhhhHhHHHHHHHhhccc
Q 000737 1038 VRGLCLRGLVQIPSIHIHQYATQVLSVILALLDD 1071 (1322)
Q Consensus 1038 VR~lalrGLg~l~~~~v~~~~~~lL~all~~L~d 1071 (1322)
||..+.++||+++. +..++.|++.|+|
T Consensus 1 VR~~Aa~aLg~igd-------~~ai~~L~~~L~d 27 (27)
T PF03130_consen 1 VRRAAARALGQIGD-------PRAIPALIEALED 27 (27)
T ss_dssp HHHHHHHHHGGG-S-------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC-------HHHHHHHHHHhcC
Confidence 79999999999996 3456777666643
No 207
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.75 E-value=3.7e+02 Score=31.55 Aligned_cols=110 Identities=14% Similarity=0.156 Sum_probs=79.7
Q ss_pred HHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccCCcchHh
Q 000737 1061 VLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREA 1140 (1322)
Q Consensus 1061 lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~~~ 1140 (1322)
.|.-.+..|++.|=.+-.+++..++++...- .+.+.+.+..+++.+..-..+.+..|-.+|+-..|++...- ..
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh-~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~l-----n~ 162 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFH-PESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSL-----NN 162 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH-----HH
Confidence 4555566777666567777777777776543 36778888889999988899999999999999999998731 12
Q ss_pred HHHHHHHhHHHHHHhccCC-ChhHHHHHHHHHHhhcc
Q 000737 1141 FLEQIHAMLPRLILHIYDD-DLSVRQACRNTLKQVAP 1176 (1322)
Q Consensus 1141 ~~eqv~~~LvpLLlHL~D~-~~~V~~ack~tL~~~a~ 1176 (1322)
-..|-+..++..|+|=.++ +.-|+..+-.||..+..
T Consensus 163 ~i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~ 199 (334)
T KOG2933|consen 163 SIDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVN 199 (334)
T ss_pred HHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHh
Confidence 2233556667777765544 67799999888877553
No 208
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=46.44 E-value=26 Score=27.76 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=24.9
Q ss_pred HhHHHHHHhccCCChhHHHHHHHHHHhhc
Q 000737 1147 AMLPRLILHIYDDDLSVRQACRNTLKQVA 1175 (1322)
Q Consensus 1147 ~~LvpLLlHL~D~~~~V~~ack~tL~~~a 1175 (1322)
+.+++|+-.|++++++|++.|..||+.++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 45677777889999999999999999875
No 209
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=43.63 E-value=4.5e+02 Score=33.85 Aligned_cols=53 Identities=17% Similarity=0.140 Sum_probs=38.3
Q ss_pred CChhhHHHHHHHHHHhcccCchhhhhhccHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHH
Q 000737 1232 PWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLK 1293 (1322)
Q Consensus 1232 ~~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k 1293 (1322)
-.+.||++-.+-.|.+- -.+++ -.++.+|.. ..+|.|+.|-..|.-|||.++.
T Consensus 652 ge~~iRravPLal~lls-vSNPq-------~~vlDtLsk-~shd~D~eva~naIfamGLiGA 704 (878)
T KOG2005|consen 652 GEPHIRRAVPLALGLLS-VSNPQ-------VNVLDTLSK-FSHDGDLEVAMNAIFAMGLIGA 704 (878)
T ss_pred CCHHHHHHHHHHHhhhc-cCCCc-------chHHHHHHH-hccCcchHHHHHHHHHhccccC
Confidence 34679998888888653 22222 235677776 7899999999999999988773
No 210
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=41.66 E-value=5.7e+02 Score=30.16 Aligned_cols=89 Identities=11% Similarity=-0.027 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChh-hHHHHHHHHHHhcccCchhhhhhccHHHHHHHHHHHhccCCCh
Q 000737 1200 ETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPI-IQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADA 1278 (1322)
Q Consensus 1200 ~~f~~~~~k~L~~~~~~~~~~~l~~~l~ylkS~~~~-IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp 1278 (1322)
.+|+.+=.+-|.+.+ ...+.+...|+++..++ +=+-|..=||+++..+|. ...-++.-.+-..+.+ |...|||
T Consensus 340 ~dFWs~N~d~l~kdn----y~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE-~~~vl~Kyg~k~~im~-L~nh~d~ 413 (432)
T COG5231 340 KDFWSTNLDMLIKDN----YEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPE-INAVLSKYGVKEIIMN-LINHDDD 413 (432)
T ss_pred cCchhhhHHHHhhhh----HHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCch-HHHHHHHhhhHHHHHH-HhcCCCc
Confidence 446555555444432 22466788899999888 556688778888877663 2222445556666777 7888999
Q ss_pred HHHHHHHHHHHHHHHH
Q 000737 1279 IVRATCSSSLGWLLKS 1294 (1322)
Q Consensus 1279 ~VR~~Aa~aL~~l~k~ 1294 (1322)
.||--|.+|+..+..+
T Consensus 414 ~VkfeAl~a~q~~i~~ 429 (432)
T COG5231 414 DVKFEALQALQTCISS 429 (432)
T ss_pred hhhHHHHHHHHHHHhh
Confidence 9999999998876644
No 211
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=41.16 E-value=42 Score=33.10 Aligned_cols=66 Identities=24% Similarity=0.346 Sum_probs=50.7
Q ss_pred hhhhhhcccccchhhHHHHHHhhhcCCChhhhh---cchHHHHHHHHH----hh-hcccHHHHHHHHHHHHHHh
Q 000737 2 FLLNKCRLKEEHLSVGALYVLKHLLPRSSEAWH---SKRPLLLEAVKS----LL-DEQNLAVQKAISELIVVMA 67 (1322)
Q Consensus 2 fll~~l~~~~E~~Rvg~L~vlrhlins~~~~~~---~k~~~i~~~~k~----~l-~d~~~kVr~a~~~~I~ama 67 (1322)
++..||++++.+....||.+|-+++...++... .+...+.+.++. .. .+.+..||..+.++|.+.+
T Consensus 41 ~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 41 AIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 577899999999999999999999998876543 234455565552 22 4678999999999987654
No 212
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.78 E-value=51 Score=36.20 Aligned_cols=87 Identities=17% Similarity=0.243 Sum_probs=72.8
Q ss_pred hHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhc--cCCc
Q 000737 1059 TQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNF--GVGS 1136 (1322)
Q Consensus 1059 ~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~--~~~~ 1136 (1322)
...|+.+.+||.+.+-+-..-|-.+...++-..+ +.+-++++++..-|+.-|..-+.+|-..+...+-.+... +.|.
T Consensus 113 ~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g-~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~ 191 (262)
T KOG3961|consen 113 CPYLPLFFDGLAETDHPYRFVARQGITDLLLAGG-EKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGA 191 (262)
T ss_pred hHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcc-cccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccch
Confidence 4579999999999988888888889999988776 678899999999999999999999999999999988874 3466
Q ss_pred chHhHHHHHH
Q 000737 1137 QREAFLEQIH 1146 (1322)
Q Consensus 1137 ~~~~~~eqv~ 1146 (1322)
.--||..|++
T Consensus 192 aLVPfYRQlL 201 (262)
T KOG3961|consen 192 ALVPFYRQLL 201 (262)
T ss_pred hhhhHHHHhh
Confidence 6666666643
No 213
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=39.85 E-value=2.2e+02 Score=29.28 Aligned_cols=93 Identities=11% Similarity=0.114 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhhHHHHHHHHHHhcccCchhhhhhccHHHHHHHHHHHhcc-CCChH-
Q 000737 1202 FVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQ-SADAI- 1279 (1322)
Q Consensus 1202 f~~~~~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~-Dpdp~- 1279 (1322)
.+-++|-.+-.. ++.....+...-..++++.+.+...|..++..++++-.+....++........|..++.. ..++.
T Consensus 25 ~~l~icD~i~~~-~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~ 103 (140)
T PF00790_consen 25 LILEICDLINSS-PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPET 103 (140)
T ss_dssp HHHHHHHHHHTS-TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHS
T ss_pred HHHHHHHHHHcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchh
Confidence 334778855554 778888888888899999999999999999999998876666666555666777662222 23333
Q ss_pred -HHHHHHHHHHHHHHHh
Q 000737 1280 -VRATCSSSLGWLLKSI 1295 (1322)
Q Consensus 1280 -VR~~Aa~aL~~l~k~~ 1295 (1322)
||.++.+-+.......
T Consensus 104 ~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 104 PVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 8999888876665443
No 214
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=39.68 E-value=2.1e+02 Score=29.01 Aligned_cols=91 Identities=5% Similarity=0.039 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhhHHHHHHHHHHhcccCchhhhhhc-cHHHHHHHHHHHhccCCCh--
Q 000737 1202 FVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSL-FYTQVFGLLVVKLSQSADA-- 1278 (1322)
Q Consensus 1202 f~~~~~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~~~~~~~~-~~e~l~~~L~~~Ll~Dpdp-- 1278 (1322)
-+++|++.-.. .++.....+.-...-+++..++||.=|-..|-++...-+++....+ ....++..+.+ -..-|||
T Consensus 21 ~~~Eia~~t~~-s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~-f~g~~Dp~~ 98 (122)
T cd03572 21 LYEEIAKLTRK-SVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECAN-YKGPPDPLK 98 (122)
T ss_pred HHHHHHHHHHc-CHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHH-cCCCCCccc
Confidence 44566665444 6666777777777888888899999999999998876553333221 22335556666 4655555
Q ss_pred ------HHHHHHHHHHHHHHHH
Q 000737 1279 ------IVRATCSSSLGWLLKS 1294 (1322)
Q Consensus 1279 ------~VR~~Aa~aL~~l~k~ 1294 (1322)
.||..|.+++..++-+
T Consensus 99 Gd~~~~~VR~~A~El~~~if~~ 120 (122)
T cd03572 99 GDSLNEKVREEAQELIKAIFSY 120 (122)
T ss_pred CcchhHHHHHHHHHHHHHHhcc
Confidence 8999999999988743
No 215
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=39.67 E-value=1.3e+03 Score=32.38 Aligned_cols=84 Identities=13% Similarity=0.177 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhhHHHHHHHHHHhcccCchhhhhhccHHHHHHHHHHHhccCCChHHHH
Q 000737 1203 VRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRA 1282 (1322)
Q Consensus 1203 ~~~~~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~ 1282 (1322)
-+.-.+.|..++++.+++.+.+| |..++ . -+...|.- +..-+-.......+...+++-- -...-||+..||.
T Consensus 490 gr~AL~nLL~~N~dLl~~~IdrC--Yss~~--~--va~gYF~v-laev~~~~~~~~~~~~~LL~L~-Lfklg~~~~eIR~ 561 (1120)
T PF14228_consen 490 GRRALKNLLEHNPDLLDWVIDRC--YSSSP--R--VAEGYFTV-LAEVFSEREYPPCPFWELLNLV-LFKLGDESSEIRS 561 (1120)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHh--cCCCh--h--HHHHHHHH-HHHHHHcCCCCCCCHHHhHHHH-HHhhcCCcHHHHH
Confidence 34446778889999999999988 55442 2 22333321 1111111111123344555422 2258899999999
Q ss_pred HHHHHHHHHHHH
Q 000737 1283 TCSSSLGWLLKS 1294 (1322)
Q Consensus 1283 ~Aa~aL~~l~k~ 1294 (1322)
.|.+=|..+-+.
T Consensus 562 ~A~qLL~~Le~R 573 (1120)
T PF14228_consen 562 KAMQLLRALEER 573 (1120)
T ss_pred HHHHHHHHHHHH
Confidence 999988887654
No 216
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=39.67 E-value=7.8e+02 Score=30.58 Aligned_cols=58 Identities=19% Similarity=0.185 Sum_probs=40.4
Q ss_pred hhHHHHHH-HHHhhhcccCccchHHHHHHHHHHhhcCCchh--chHHHHHHHHHhhcCCCC
Q 000737 978 KEVQTICL-ILTKSINRQQRFQREAAAAALSEFVRYSGGFD--SLLEQMVEALCRHVSDES 1035 (1322)
Q Consensus 978 ~~~~~il~-~l~~~l~s~~~~~Ri~a~aflsEll~~~~~~~--~ll~~~~~~L~~~l~D~~ 1035 (1322)
+....++. .+.++|+|+...||.+|..++.|.-....... ...+.+...|...|.+|+
T Consensus 121 ~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~~~ 181 (441)
T PF12054_consen 121 SSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILENPE 181 (441)
T ss_pred chHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcCCC
Confidence 34556666 58999999999999999999999877643311 113455666666666543
No 217
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=39.20 E-value=7.1e+02 Score=29.39 Aligned_cols=169 Identities=14% Similarity=0.101 Sum_probs=100.7
Q ss_pred hchHHHHHHHHHhhcCCCChhHHhhh--hhcccCCCchh-----HhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhc
Q 000737 1017 DSLLEQMVEALCRHVSDESPTVRGLC--LRGLVQIPSIH-----IHQYATQVLSVILALLDDLDESVQLTAVSCLLTILK 1089 (1322)
Q Consensus 1017 ~~ll~~~~~~L~~~l~D~~~~VR~la--lrGLg~l~~~~-----v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~ 1089 (1322)
..+++.+-+++...=.||=...|.+- -|=+|+.+.-+ +-+--+..++.-++..+-.|.+.+-.|+.+|+.+..
T Consensus 254 eglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGS 333 (524)
T KOG4413|consen 254 EGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGS 333 (524)
T ss_pred hhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccC
Confidence 34555555566555567766666553 23344444322 212112223333344444567788888888888876
Q ss_pred cCCcccch-----hhHHhHHHHhccccccCChhHHHHHHHHHHHHhh--------ccCCcchHhHHHHHHHhHH------
Q 000737 1090 SSSKDAVE-----PILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN--------FGVGSQREAFLEQIHAMLP------ 1150 (1322)
Q Consensus 1090 ~l~~~~~~-----~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~--------~~~~~~~~~~~eqv~~~Lv------ 1150 (1322)
..+..++- |-.-++.. .-|+.....-..+|+.++.+++. ..+|+..+.++.-++.++-
T Consensus 334 nteGadlllkTgppaaehlla---rafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkld 410 (524)
T KOG4413|consen 334 NTEGADLLLKTGPPAAEHLLA---RAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLD 410 (524)
T ss_pred CcchhHHHhccCChHHHHHHH---HHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCC
Confidence 55433221 12222222 23444444456778888888875 2556677777777776553
Q ss_pred HHHH---hccCCChhHHHHHHHHHHhhcchhhhhhhhhhccc
Q 000737 1151 RLIL---HIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSH 1189 (1322)
Q Consensus 1151 pLLl---HL~D~~~~V~~ack~tL~~~a~~L~~~l~~lf~~~ 1189 (1322)
|+=+ -++.+-|+++-++-.||..++.- -|-++++|.+.
T Consensus 411 PleLFlgilqQpfpEihcAalktfTAiaaq-PWalkeifake 451 (524)
T KOG4413|consen 411 PLELFLGILQQPFPEIHCAALKTFTAIAAQ-PWALKEIFAKE 451 (524)
T ss_pred hHHHHHHHHcCCChhhHHHHHHHHHHHHcC-cHHHHHHhcCc
Confidence 3333 57888999999999999988864 57888888875
No 218
>PF14961 BROMI: Broad-minded protein
Probab=39.17 E-value=1.8e+02 Score=39.76 Aligned_cols=197 Identities=14% Similarity=0.149 Sum_probs=118.0
Q ss_pred HHHHhhcCCC-ChhHHhhhhhcccCCCchhH--hhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHH
Q 000737 1025 EALCRHVSDE-SPTVRGLCLRGLVQIPSIHI--HQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILL 1101 (1322)
Q Consensus 1025 ~~L~~~l~D~-~~~VR~lalrGLg~l~~~~v--~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~ 1101 (1322)
+.+.+.+.-. --.||.-|++-|-.+.+.+| ...-+.+-..+..+|.|+|+.+...++.-..+.+...+-.....+..
T Consensus 164 q~i~d~ld~~~P~evR~eAlq~Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSpl~~trEiYt 243 (1296)
T PF14961_consen 164 QLIADKLDPGQPKEVRLEALQILCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSPLNMTREIYT 243 (1296)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCchhhhHHHHH
Confidence 4555555443 44689999999999887554 34567778889999999999999999999999998776555556677
Q ss_pred hHHHHhccccccCChhHH-------------HH---HHHHHHHHhh----ccCCcchHhHHHHHHHhHHHHHH-hccCCC
Q 000737 1102 NLSVRLRNLQVSMNVKMR-------------RN---AFAAFGALSN----FGVGSQREAFLEQIHAMLPRLIL-HIYDDD 1160 (1322)
Q Consensus 1102 ~l~~~lrpffede~~~vR-------------~a---Ai~lfG~L~~----~~~~~~~~~~~eqv~~~LvpLLl-HL~D~~ 1160 (1322)
+++..+-..|-..+..+. .. .|++.-+.-+ ++. ...+.|.|+|...-..|+- |... +
T Consensus 244 sL~~~l~~~Fls~~~~lptl~~giDi~~~~~~rLLk~vrLlneyq~E~ps~Wi-RhpeK~mEeIVEsTLsLLs~~~~~-~ 321 (1296)
T PF14961_consen 244 SLANHLESYFLSQKNSLPTLSSGIDITFPDIERLLKKVRLLNEYQKEVPSFWI-RHPEKYMEEIVESTLSLLSTHHDQ-N 321 (1296)
T ss_pred HHHHHHHHHHHhccccCccccccccccCccHHHHHHHHHHHHHHHHhcchhhh-cCcHHHHHHHHHHHHHHhcccccC-C
Confidence 777777555533332221 11 2222222211 111 1345677777776666654 4333 3
Q ss_pred hhHHHHHHHHHHhhcchhhh-hhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCC
Q 000737 1161 LSVRQACRNTLKQVAPFMEI-GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPW 1233 (1322)
Q Consensus 1161 ~~V~~ack~tL~~~a~~L~~-~l~~lf~~~~~~~~~~l~~~~f~~~~~k~L~~~~~~~~~~~l~~~l~ylkS~~ 1233 (1322)
.-+..++-..+ .++.. +.++..-+. |-.| ..-+. .+.+.|.++++..+..-+.||+.|+.+..
T Consensus 322 ~~~s~k~L~pi----~~lslLD~kA~WFkK-WmHg--~ySR~---vvlr~L~kky~sli~~av~qCi~y~~~~~ 385 (1296)
T PF14961_consen 322 SLGSPKTLTPI----HFLSLLDPKAVWFKK-WMHG--YYSRT---VVLRLLEKKYKSLIVNAVQQCIQYVESCE 385 (1296)
T ss_pred Ccccccccchh----hhhhhhccchHHHHH-HHhh--cchHH---HHHHHHccccchHHHHHHHHHHHHHHHhh
Confidence 33232222222 23333 333333222 5554 11121 23567777888888899999999988654
No 219
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.42 E-value=9.7e+02 Score=30.39 Aligned_cols=215 Identities=11% Similarity=0.079 Sum_probs=108.5
Q ss_pred HHHHHhcCC-cchHHHHHHhhHHHHHHHHHHhhhhccCC-CCCCCC----hHHHHHHHHHHHHHHhCcHHHHHHHH----
Q 000737 881 LTAFFRGGG-KVGKKAVEKSYAPVLAALTLQLGSCHGLA-SSGQHE----PLRAILTSFQAFCECVGDLEMRKILA---- 950 (1322)
Q Consensus 881 L~Ell~~~~-~~~~~~v~~~fp~Lf~aLL~ql~~~~~l~-~~~~~~----P~~~aleAlk~ll~~~g~~~~~~~Le---- 950 (1322)
+.|++...+ +++...-+..|-+|...+..+++|--+.. .+.+.+ -+....+.+|-.-.-.|..+..+.+-
T Consensus 318 lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~ 397 (559)
T KOG2081|consen 318 LSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDECLKQMYIRLK 397 (559)
T ss_pred hHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHc
Confidence 455555542 12333335666677777766666543221 111111 13456666666555567766665433
Q ss_pred h-cCCCCchhhHHHhHHHHHHHHhhhCCh----hHHHHHHHHHhhhcccCccchHHHHHHHHHHhhcCCchhchHHHHHH
Q 000737 951 R-DGEQNDKEKWINLIGDVAGCVSIKRPK----EVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVE 1025 (1322)
Q Consensus 951 ~-~~~w~~~~~~~~GV~lLar~l~~~~~~----~~~~il~~l~~~l~s~~~~~Ri~a~aflsEll~~~~~~~~ll~~~~~ 1025 (1322)
+ +..|+..+- .--..++++++-++ .++.|++.+... ....+-|-+++..++++=.=-.....+++.+..
T Consensus 398 e~~~~We~~EA----aLF~l~~~~~~~~~~e~~i~pevl~~i~nl--p~Q~~~~~ts~ll~g~~~ew~~~~p~~le~v~~ 471 (559)
T KOG2081|consen 398 ENNASWEEVEA----ALFILRAVAKNVSPEENTIMPEVLKLICNL--PEQAPLRYTSILLLGEYSEWVEQHPELLEPVLR 471 (559)
T ss_pred cCCCchHHHHH----HHHHHHHHhccCCccccchHHHHHHHHhCC--ccchhHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 2 347763332 22235666666555 566666655544 233346677776666542211112345566666
Q ss_pred HHHhhcCCCChhHHhhhhhcccCCCc---hhHhhhHhHHHHHHHhhccc--CChHHHHHHHHHHHHHhccCCcccchhhH
Q 000737 1026 ALCRHVSDESPTVRGLCLRGLVQIPS---IHIHQYATQVLSVILALLDD--LDESVQLTAVSCLLTILKSSSKDAVEPIL 1100 (1322)
Q Consensus 1026 ~L~~~l~D~~~~VR~lalrGLg~l~~---~~v~~~~~~lL~all~~L~d--~d~~V~leam~~L~~ll~~l~~~~~~~~l 1100 (1322)
.+.+++.+.. .-.++..+.-++.. .++..+.+.++. ++..|+. .+++.+. -+++++.++.++.+..+...+
T Consensus 472 ~~~~~~~~~~--~as~~a~~~~~i~~~c~~~~~~l~~~~~~-l~~~l~~~~~~~e~a~-l~~~~s~i~~~lp~~k~~~~~ 547 (559)
T KOG2081|consen 472 YIRQGLQLKR--LASAAALAFHRICSACRVQMTCLIPSLLE-LIRSLDSTQINEEAAC-LLQGISLIISNLPAHKAKIAL 547 (559)
T ss_pred HHHHHhhhcc--hhHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHhccHHHHH-HHHHHHHHHhcCCHhhhhHHH
Confidence 7777766554 11111122222221 233223333221 2222222 1355555 899999999999988887777
Q ss_pred HhHHH
Q 000737 1101 LNLSV 1105 (1322)
Q Consensus 1101 ~~l~~ 1105 (1322)
-+++.
T Consensus 548 ~el~~ 552 (559)
T KOG2081|consen 548 EELCE 552 (559)
T ss_pred HHHhh
Confidence 66654
No 220
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=35.51 E-value=8.4e+02 Score=29.14 Aligned_cols=203 Identities=15% Similarity=0.147 Sum_probs=111.9
Q ss_pred CCCchhhHHHhHHHHHHHHhhhCChhHHHHHHHHHhhhcccCccchHHHHHHHHHHhhcCCchhc------hH---HHHH
Q 000737 954 EQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDS------LL---EQMV 1024 (1322)
Q Consensus 954 ~w~~~~~~~~GV~lLar~l~~~~~~~~~~il~~l~~~l~s~~~~~Ri~a~aflsEll~~~~~~~~------ll---~~~~ 1024 (1322)
|+++.++-.+.|..|+..+.. ..++..++..|..-+=.-|.-++.+|+-+++...+... +. ..++
T Consensus 54 G~~e~ep~~e~v~qLa~Ei~~------~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil 127 (335)
T PF08569_consen 54 GDGEPEPNPEQVAQLAQEIYR------SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEIL 127 (335)
T ss_dssp S-SS----HHHHHHHHHHHHH------HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHH
T ss_pred CCCCCCCCHHHHHHHHHHHHH------hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHH
Confidence 666666667778888887764 35555566666666666777777888888876433221 11 2266
Q ss_pred HHHHhhcCCCChhHHh-hhhhcccCCCchhHhhh--HhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhH-
Q 000737 1025 EALCRHVSDESPTVRG-LCLRGLVQIPSIHIHQY--ATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPIL- 1100 (1322)
Q Consensus 1025 ~~L~~~l~D~~~~VR~-lalrGLg~l~~~~v~~~--~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l- 1100 (1322)
..|..+-.+|+...=- .-+|-.-.- +.+.++ ....+.-+.+..+..+=+|...|+.++..++..= ..-++.++
T Consensus 128 ~~L~~gy~~~dial~~g~mlRec~k~--e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~h-k~~~a~fl~ 204 (335)
T PF08569_consen 128 DILLRGYENPDIALNCGDMLRECIKH--ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRH-KKLVAEFLS 204 (335)
T ss_dssp HHHHHGGGSTTTHHHHHHHHHHHTTS--HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSS-HHHHHHHHH
T ss_pred HHHHHHhcCccccchHHHHHHHHHhh--HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhcc-HHHHHHHHH
Confidence 6677777666543211 111110000 111110 0111222334444455679999999999998641 22223332
Q ss_pred ---HhHHHHhccccccCChhHHHHHHHHHHHHhhccCCcchHhHHHHH--HHhHHHHHHhccCCChhHHHHH
Q 000737 1101 ---LNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQI--HAMLPRLILHIYDDDLSVRQAC 1167 (1322)
Q Consensus 1101 ---~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv--~~~LvpLLlHL~D~~~~V~~ac 1167 (1322)
-......-.+++.+|.-.|.-|+.++|++.- .......+..=| -.+|--++.+|.|....|+-.|
T Consensus 205 ~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~elll--dr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eA 274 (335)
T PF08569_consen 205 NNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLL--DRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEA 274 (335)
T ss_dssp HTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHH--SGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHH--chhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHH
Confidence 2344455678889999999999999999996 223333332221 2566677779999999988766
No 221
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=35.40 E-value=3.3e+02 Score=28.30 Aligned_cols=88 Identities=10% Similarity=0.067 Sum_probs=61.2
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHhhccCccccccHH--HHHHHHHHHhhhcCcHHHHH
Q 000737 726 RIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVS--RTTQSLLSAAVHITDKHLRL 803 (1322)
Q Consensus 726 ~i~~~i~~~L~~~el~~li~~ll~~L~d~~~~~~~~A~~~L~~~l~~~g~~L~e~~V~--eI~~~i~~~L~~i~~~~~r~ 803 (1322)
.||..|... +..=.+-+..+...|.+++++...-|-.+|.++++..|..+..+ |+ +.++.+..-+..-....|+.
T Consensus 23 ~icD~I~~~--~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~e-vask~Fl~eL~kl~~~~~~~~Vk~ 99 (144)
T cd03568 23 DVCDKVKSD--ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQE-VASRDFTQELKKLINDRVHPTVKE 99 (144)
T ss_pred HHHHHHhcC--CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHH-HhhHHHHHHHHHHhcccCCHHHHH
Confidence 555555443 33445667777788888888888889999999999999988432 43 23333333333337788999
Q ss_pred HHHHHHHHHHhhc
Q 000737 804 ETLGAISCLAENT 816 (1322)
Q Consensus 804 ~~l~aI~lLa~~h 816 (1322)
.++..|...+..+
T Consensus 100 kil~li~~W~~~f 112 (144)
T cd03568 100 KLREVVKQWADEF 112 (144)
T ss_pred HHHHHHHHHHHHh
Confidence 9999988888776
No 222
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=35.31 E-value=5.7e+02 Score=31.34 Aligned_cols=212 Identities=15% Similarity=0.143 Sum_probs=113.3
Q ss_pred hHHHhHHHHHHHHhhhCCh------hHHHHHHHHHhhhcccCccchHHHHHHHHHHhhcCCc-hhchHHHHHHHHHhhcC
Q 000737 960 KWINLIGDVAGCVSIKRPK------EVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGG-FDSLLEQMVEALCRHVS 1032 (1322)
Q Consensus 960 ~~~~GV~lLar~l~~~~~~------~~~~il~~l~~~l~s~~~~~Ri~a~aflsEll~~~~~-~~~ll~~~~~~L~~~l~ 1032 (1322)
+|.+-|..+.-.+....+. .-+..+..++..+.|++++.|-....++..+...... .....+.+.+.+.+-+.
T Consensus 105 pHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~ 184 (409)
T PF01603_consen 105 PHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIY 184 (409)
T ss_dssp HHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhc
Confidence 4677776666666655432 4468888899999999999998777777665544333 22233334444443332
Q ss_pred CCChh------HHhh--hhhccc----------------CCCc-hhHhhhHhHHHHHHHhhcccCChH------------
Q 000737 1033 DESPT------VRGL--CLRGLV----------------QIPS-IHIHQYATQVLSVILALLDDLDES------------ 1075 (1322)
Q Consensus 1033 D~~~~------VR~l--alrGLg----------------~l~~-~~v~~~~~~lL~all~~L~d~d~~------------ 1075 (1322)
+...- .+.+ -++|.. .+-. .....|.+++..++..-++ .|+.
T Consensus 185 e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~-kdp~l~~~~i~~llk~ 263 (409)
T PF01603_consen 185 ETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLE-KDPSLAEPVIKGLLKH 263 (409)
T ss_dssp TTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHH-H-GGGHHHHHHHHHHH
T ss_pred CcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH-hCchhHHHHHHHHHHh
Confidence 21111 1111 133322 1111 3345566665555544443 3322
Q ss_pred -------HHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHh
Q 000737 1076 -------VQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAM 1148 (1322)
Q Consensus 1076 -------V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~ 1148 (1322)
=..--+.-+..|+..++......+...+..++..+...++..|=..|+.++..=-=. .......+.++..
T Consensus 264 WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~---~li~~~~~~i~p~ 340 (409)
T PF01603_consen 264 WPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFL---SLISQNSRVILPI 340 (409)
T ss_dssp S-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHH---HHHHCTHHHHHHH
T ss_pred CCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHH---HHHHhChHHHHHH
Confidence 122335567777888887788888888888888888888888888887665432100 0011122334444
Q ss_pred HHHHHHhccCC--ChhHHHHHHHHHHhhc
Q 000737 1149 LPRLILHIYDD--DLSVRQACRNTLKQVA 1175 (1322)
Q Consensus 1149 LvpLLlHL~D~--~~~V~~ack~tL~~~a 1175 (1322)
+.|-+...... |..|+..+..++..+-
T Consensus 341 i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~ 369 (409)
T PF01603_consen 341 IFPALYRNSKNHWNQTVRNLAQNVLKILM 369 (409)
T ss_dssp HHHHHSSTTSS-SSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 44433332222 6678877777766543
No 223
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=35.14 E-value=3.3e+02 Score=27.67 Aligned_cols=90 Identities=13% Similarity=0.062 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhhHHHHHHHHHHhcccCchhhhhhccHHHHHHHHHHHhccC---CCh
Q 000737 1202 FVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQS---ADA 1278 (1322)
Q Consensus 1202 f~~~~~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~D---pdp 1278 (1322)
..-++|-.+- +.+......+...-..++++.+.+.-.|...+..++++.......++....-...|+. +..+ .++
T Consensus 20 ~il~icd~I~-~~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~-l~~~~~~~~~ 97 (133)
T cd03561 20 LNLELCDLIN-LKPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVK-IAKNSPKYDP 97 (133)
T ss_pred HHHHHHHHHh-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHH-HhCCCCCCCH
Confidence 3446676654 4466666677777779999999999999999999998877655445555444444777 4544 689
Q ss_pred HHHHHHHHHHHHHHH
Q 000737 1279 IVRATCSSSLGWLLK 1293 (1322)
Q Consensus 1279 ~VR~~Aa~aL~~l~k 1293 (1322)
.||.++.+.+.....
T Consensus 98 ~Vk~kil~ll~~W~~ 112 (133)
T cd03561 98 KVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999888766553
No 224
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=34.47 E-value=6.6e+02 Score=28.38 Aligned_cols=70 Identities=14% Similarity=0.126 Sum_probs=40.1
Q ss_pred cCCCChhHHhhhhhcccCCCchhHhhhHhHHHHHHHhhc-ccCChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhcc
Q 000737 1031 VSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALL-DDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRN 1109 (1322)
Q Consensus 1031 l~D~~~~VR~lalrGLg~l~~~~v~~~~~~lL~all~~L-~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrp 1109 (1322)
++|+++.|-+-++.+.+++-+ .++.-+ .+.+.+-.+++|..+..- |..
T Consensus 2 l~d~d~~v~K~~I~~~~~iy~------------~~~~~i~~~~~~~~~W~~~~~lK~~-------------------Il~ 50 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSIYP------------LVFRWICVNPSDEQLWESMNELKDR-------------------ILS 50 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHHHH------------HHHHHHS--HHHHHHHHHHHHHHHH-------------------HHH
T ss_pred CCCCcHHHHHHHHHHHHHHHH------------HHHHHHcCCchHHHHHHHHHHHHHH-------------------HHH
Confidence 578888888888877665532 112222 111233555555555432 223
Q ss_pred ccccCChhHHHHHHHHHHHHhh
Q 000737 1110 LQVSMNVKMRRNAFAAFGALSN 1131 (1322)
Q Consensus 1110 ffede~~~vR~aAi~lfG~L~~ 1131 (1322)
.|+++++.||..|+-....+.-
T Consensus 51 ~~~~~~~gvk~~~iKFle~vIl 72 (239)
T PF11935_consen 51 LWDSENPGVKLAAIKFLERVIL 72 (239)
T ss_dssp GGGSSSHHHHHHHHHHHHHHHH
T ss_pred HhcCCCchHHHHHHHHHHHHHH
Confidence 5777778888888877776664
No 225
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=34.28 E-value=1e+03 Score=29.65 Aligned_cols=202 Identities=10% Similarity=0.084 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccCCcch----HhHHHHHHHhHHH
Q 000737 1076 VQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQR----EAFLEQIHAMLPR 1151 (1322)
Q Consensus 1076 V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~----~~~~eqv~~~Lvp 1151 (1322)
.+..|..+|+.++..+.......++-. .+.+.++....-=|..|--++..-++....... ..|.++++..|
T Consensus 103 ~Ri~aA~ALG~l~~~~~~~~~~~~~~~---~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L-- 177 (441)
T PF12054_consen 103 ARIAAAKALGLLLSYWPESSLQEIFQP---LLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEIL-- 177 (441)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHH---HHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHH--
Confidence 567888999999988866655544332 367788888888888888777777764322211 23333333333
Q ss_pred HHHhccCCCh----hHHHHHHHHHHhhcchhhh-hhhhh---------hccccCCC--C-CCCCh---HHHHHHHHHHHH
Q 000737 1152 LILHIYDDDL----SVRQACRNTLKQVAPFMEI-GVYGI---------FNSHCFNS--D-HRSDY---ETFVRDLTRQFV 1211 (1322)
Q Consensus 1152 LLlHL~D~~~----~V~~ack~tL~~~a~~L~~-~l~~l---------f~~~~~~~--~-~~l~~---~~f~~~~~k~L~ 1211 (1322)
.++.+ +++...+.....|..++.. .-... -..-.... + ..++. +.++.+....+.
T Consensus 178 -----~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~ 252 (441)
T PF12054_consen 178 -----ENPEPPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLK 252 (441)
T ss_pred -----cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHH
Confidence 22222 2333444444445544444 22222 11000000 1 12332 334443333344
Q ss_pred HhCcc--hH---------HHHHHHHHhhhcCCCh----hhHHHHHHHHHHhc--ccCchhhhhhccHHHHHHHHHHHhcc
Q 000737 1212 QHFPS--RI---------DSYMGSTIQAFEAPWP----IIQANAIYFSSSIL--CLCDDQHILSLFYTQVFGLLVVKLSQ 1274 (1322)
Q Consensus 1212 ~~~~~--~~---------~~~l~~~l~ylkS~~~----~IR~aA~~fiG~l~--~~l~~~~~~~~~~e~l~~~L~~~Ll~ 1274 (1322)
...+. +. ..-+..++.+++..|. .|+++++ |.++ +.+|+. ..-++..|.+..++
T Consensus 253 ~~l~~~~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A---~A~v~l~~lP~K------LnPiIrpLMdSIK~ 323 (441)
T PF12054_consen 253 KSLSPSQKLSALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAA---SALVALGGLPKK------LNPIIRPLMDSIKR 323 (441)
T ss_pred HhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhccCCCC------ccHHHHHHHHHhhc
Confidence 43321 11 1224445666666553 3444433 4444 344433 26678889998999
Q ss_pred CCChHHHHHHHHHHHHHHHHhc
Q 000737 1275 SADAIVRATCSSSLGWLLKSIN 1296 (1322)
Q Consensus 1275 Dpdp~VR~~Aa~aL~~l~k~~~ 1296 (1322)
++++..+..||.++..|...|.
T Consensus 324 Een~~LQ~rsA~slA~Li~~~~ 345 (441)
T PF12054_consen 324 EENELLQQRSAESLARLIQLCV 345 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998887
No 226
>PRK14707 hypothetical protein; Provisional
Probab=33.75 E-value=1.9e+03 Score=32.75 Aligned_cols=378 Identities=18% Similarity=0.118 Sum_probs=193.0
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHhhHHHHHHHHHHhhhhccCCCCCCCChHHHHHHHHHHHHHH-------hCcHHHHHH
Q 000737 876 AAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEPLRAILTSFQAFCEC-------VGDLEMRKI 948 (1322)
Q Consensus 876 aA~~aL~Ell~~~~~~~~~~v~~~fp~Lf~aLL~ql~~~~~l~~~~~~~P~~~aleAlk~ll~~-------~g~~~~~~~ 948 (1322)
|+...=++++..+ +.++++-++-...|+.-++-+.+ ..+|+.+...|-..+.+ ..-+.+...
T Consensus 142 a~a~i~~~~~~~~-----~~~~~l~~~~~~lllNafSKw~~------~~~c~~aa~~la~~~~~~d~~~~~~~~q~ia~~ 210 (2710)
T PRK14707 142 AVARLARHLRRED-----KARQTLNAQNISLALNAFSKWSD------NPDCQAVAPRFAALVASDDRLRSAMDAQGVATV 210 (2710)
T ss_pred HHHHHHHHhcccc-----chhhhhccccHHHHHHHhhcCCC------CchHHHHHHHHHHHhcCChhhhcccchHHHHHH
Confidence 3333334555443 55666777777777666654444 25688888888665543 233445555
Q ss_pred HHhcCCCCchhhHHHhHHHHHHHHhhh-------CChhHHHHHHHHHhhhcccCccchHHHHHHHHHHhhcCCchh----
Q 000737 949 LARDGEQNDKEKWINLIGDVAGCVSIK-------RPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFD---- 1017 (1322)
Q Consensus 949 Le~~~~w~~~~~~~~GV~lLar~l~~~-------~~~~~~~il~~l~~~l~s~~~~~Ri~a~aflsEll~~~~~~~---- 1017 (1322)
+.--..|-+..+-...+..||--++.. .++.+-..++.|.+.-.. ...+-++.+.-..+...+....
T Consensus 211 lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~~~~q~va~~lN~lsKwp~~--~~C~~a~~~lA~rl~~~~~l~~al~~ 288 (2710)
T PRK14707 211 LNALCKWPDTPDCGNAVSALAERLADESRLRNELKPQELGNALNALSKWADT--PVCAAAASALAERLVDDPGLRKALDP 288 (2710)
T ss_pred HHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHhCChHHHHHHHHHHhcCCCc--hHHHHHHHHHHHHHhhhHHHHHhcCH
Confidence 555568887777777887777766542 345777778888877333 3445566666666766554321
Q ss_pred chHHHHHHHHHhhcCCCChhHHhhhhhccc-CCCc-hhH-hhhHhHHHHHHHhhccc-CChHHHHHHHHHHHHH------
Q 000737 1018 SLLEQMVEALCRHVSDESPTVRGLCLRGLV-QIPS-IHI-HQYATQVLSVILALLDD-LDESVQLTAVSCLLTI------ 1087 (1322)
Q Consensus 1018 ~ll~~~~~~L~~~l~D~~~~VR~lalrGLg-~l~~-~~v-~~~~~~lL~all~~L~d-~d~~V~leam~~L~~l------ 1087 (1322)
.-+-..+|.|.+| |+..|-..+.-.|+ .+.. .+. ..+-++-+.-++++|.. +|..+-.+|..+|..=
T Consensus 289 q~vanalNalSKw---pd~~vc~~Aa~~la~rl~~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~ 365 (2710)
T PRK14707 289 INVTQALNALSKW---ADLPVCAEAAIALAERLADDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPE 365 (2710)
T ss_pred HHHHHHHhhhhcC---CCchHHHHHHHHHHHHHhccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHh
Confidence 1112234444443 55556555544444 3333 111 22333344445555544 3444555555555432
Q ss_pred -hccCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccCCcchHhHHHH-HHHhHHHHHHhccCCChhHHH
Q 000737 1088 -LKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQ-IHAMLPRLILHIYDDDLSVRQ 1165 (1322)
Q Consensus 1088 -l~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eq-v~~~LvpLLlHL~D~~~~V~~ 1165 (1322)
...++.+++++.+-.++. =.|++.-|.+|..|=|.++. +-+..+.|-.| |-+.|--|- +=++..+..
T Consensus 366 l~~~l~~q~~a~~lNalsK------Wp~~~~c~~aa~~LA~~l~~--d~~l~~~~~~Q~van~lnals---KWPd~~~C~ 434 (2710)
T PRK14707 366 LRKDLEPQGVSSVLNALSK------WPDTPVCAAAASALAEHVVD--DLELRKGLDPQGVSNALNALA---KWPDLPICG 434 (2710)
T ss_pred hhcccchhHHHHHHhhhhc------CCCchHHHHHHHHHHHHhcc--ChhhhhhcchhhHHHHHHHhh---cCCcchhHH
Confidence 356666677666544422 13667889999999998885 34455555555 223322221 223333333
Q ss_pred HHHHHH-Hhhcc------hhhh-hh---hhhhccccCCCCCCCChHHHHHHHHHHHH------HhC-cchHHHHHHHHHh
Q 000737 1166 ACRNTL-KQVAP------FMEI-GV---YGIFNSHCFNSDHRSDYETFVRDLTRQFV------QHF-PSRIDSYMGSTIQ 1227 (1322)
Q Consensus 1166 ack~tL-~~~a~------~L~~-~l---~~lf~~~~~~~~~~l~~~~f~~~~~k~L~------~~~-~~~~~~~l~~~l~ 1227 (1322)
++..+| ++++. -|.. .+ -..+.| |-+. -..++..+.+...|. +.+ |..+...+..
T Consensus 435 ~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSK--WPd~--p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~a--- 507 (2710)
T PRK14707 435 QAVSALAGRLAHDTELCKALDPINVTQALDALSK--WPDT--PICGQTASALAARLAHERRLRKALKPQEVVIALHS--- 507 (2710)
T ss_pred HHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhc--CCCC--hhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHH---
Confidence 333333 11111 0111 11 112233 4443 112222222222222 111 2233333333
Q ss_pred hhcCCC-hhhHHHHHHHHHHhcccCchhhhhhccHHHHHHHHHHHhccCCChHHHHHHHHHHHH
Q 000737 1228 AFEAPW-PIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGW 1290 (1322)
Q Consensus 1228 ylkS~~-~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~ 1290 (1322)
..|=|. +.-..++.+.+|.+.+.... ....+.-++...+-. +.|-|+....+.|+.++..
T Consensus 508 LSK~Pd~~~c~~A~~~lA~rl~~~~~l--~~~~~~~~~~~~lna-lSKwp~s~~C~~A~~~iA~ 568 (2710)
T PRK14707 508 LSKWPDTPICAEAASALAERVVDELQL--RKAFDAHQVVNTLKA-LSKWPDKQLCAVAASGLAE 568 (2710)
T ss_pred hhcCCCcHHHHHHHHHHHHHhccchhh--hhhhhhHHHHHHHHh-hhcCCchhHHHHHHHHHHH
Confidence 334344 24667788889988853221 111233444444544 6778888877777776654
No 227
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=33.71 E-value=4.1e+02 Score=35.61 Aligned_cols=160 Identities=15% Similarity=0.180 Sum_probs=99.4
Q ss_pred cCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHHhccCCChhHHHHHHHHHHhhc-chhhhhhhhhhccccC
Q 000737 1113 SMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVA-PFMEIGVYGIFNSHCF 1191 (1322)
Q Consensus 1113 de~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a-~~L~~~l~~lf~~~~~ 1191 (1322)
|+-+.||..|...|.++.....+.... +|+. .++---.|+--.++++.-.++-+-. ++-.- --... |
T Consensus 483 DkaaavR~~al~s~tk~l~l~~~~~~~----sIl~---~~inS~~d~~fs~ves~~~~~~~~~~~~s~~----~~tt~-~ 550 (1529)
T KOG0413|consen 483 DKAAAVRLHALNSLTKILQLQSHREAF----SILC---ATINSEMDEKFSAVESLEDLNVSGKAPSSKT----KKTTD-L 550 (1529)
T ss_pred hhhHHHHHHHHHHHHHHHHHhcccchH----HHHH---HhcCCccccchhHHHhchhhhhcccCccccc----ccchh-h
Confidence 567889999999999998854443222 2222 2222445666778877766653311 11111 00011 1
Q ss_pred CCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHH-Hhhhc-CCChhhHHHHHHHHHHhcccCchhhhhhccHHHHHHHHH
Q 000737 1192 NSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGST-IQAFE-APWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLV 1269 (1322)
Q Consensus 1192 ~~~~~l~~~~f~~~~~k~L~~~~~~~~~~~l~~~-l~ylk-S~~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~ 1269 (1322)
-.+-++..-|.-.-++.+...++...+..- +..+. +.-.++|.+|...+-....+-+.+.. .|.+.--|+
T Consensus 551 ----l~~~~~ii~d~~~~~~~~ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~----fe~~L~iLq 622 (1529)
T KOG0413|consen 551 ----LLDEQQIIQDFKLKLMNKGETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASK----FEVVLSILQ 622 (1529)
T ss_pred ----cCcchhhhhhcchhhhhccccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhc----chhHHHHHH
Confidence 111233444555566777767777765543 34555 56677999999887777766654443 355567788
Q ss_pred HHhccCCChHHHHHHHHHHHHHHH
Q 000737 1270 VKLSQSADAIVRATCSSSLGWLLK 1293 (1322)
Q Consensus 1270 ~~Ll~Dpdp~VR~~Aa~aL~~l~k 1293 (1322)
+ +=+||-..||..++++|+.+..
T Consensus 623 ~-lCrd~~vsvrk~~~~Sltel~~ 645 (1529)
T KOG0413|consen 623 M-LCRDRMVSVRKTGADSLTELML 645 (1529)
T ss_pred H-HhcCcchHHHHHHHHHHHHHHh
Confidence 8 7899999999999999998773
No 228
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=33.38 E-value=8e+02 Score=28.24 Aligned_cols=84 Identities=15% Similarity=0.223 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHh--cCCCCchhhHHHhHHHHHHHHhhhC-ChhHHHHHHHHHhhhcccCccchHHH
Q 000737 926 LRAILTSFQAFCECVGDLEMRKILAR--DGEQNDKEKWINLIGDVAGCVSIKR-PKEVQTICLILTKSINRQQRFQREAA 1002 (1322)
Q Consensus 926 ~~~aleAlk~ll~~~g~~~~~~~Le~--~~~w~~~~~~~~GV~lLar~l~~~~-~~~~~~il~~l~~~l~s~~~~~Ri~a 1002 (1322)
+..+-+++-.++...|+.+....|.. .+...+.+.|..-| ++.+..+- |.+-..++.++...+.++....|...
T Consensus 132 ~~~~A~~La~~a~~~~~~~La~il~~ya~~~fr~~~dfl~~v---~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~ 208 (262)
T PF14225_consen 132 CIEIAEALAQVAEAQGLPNLARILSSYAKGRFRDKDDFLSQV---VSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKT 208 (262)
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHhcCCCCHHHHHHHH---HHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHH
Confidence 45566677777766666666665553 23334444444433 44555443 34445566666666665555555555
Q ss_pred HHHHHHHhhc
Q 000737 1003 AAALSEFVRY 1012 (1322)
Q Consensus 1003 ~aflsEll~~ 1012 (1322)
+-++--++..
T Consensus 209 L~iL~~ll~~ 218 (262)
T PF14225_consen 209 LQILKVLLPH 218 (262)
T ss_pred HHHHHHHhcc
Confidence 5555555544
No 229
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=33.33 E-value=3.4e+02 Score=33.30 Aligned_cols=132 Identities=14% Similarity=0.095 Sum_probs=88.8
Q ss_pred hhhHHHhHHHHHHHHhhhCChhHHHHHHHHHhhhcccCccchHHHHHHHHHHhhcCCc--hhchHHHHHHHHHhhcCCCC
Q 000737 958 KEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGG--FDSLLEQMVEALCRHVSDES 1035 (1322)
Q Consensus 958 ~~~~~~GV~lLar~l~~~~~~~~~~il~~l~~~l~s~~~~~Ri~a~aflsEll~~~~~--~~~ll~~~~~~L~~~l~D~~ 1035 (1322)
-..|+.-+.-.....+.+.|.....++..+.++=-..+....+.-+-.+.+++..... .......+...+.+.++.++
T Consensus 231 ~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h 310 (409)
T PF01603_consen 231 LSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPH 310 (409)
T ss_dssp GGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3455555555566677778888888888888776666666666666666777765332 34555678899999999999
Q ss_pred hhHHhhhhhcccCCCc-hhHhhhHhHHHHHHHhhcccC-----ChHHHHHHHHHHHHHhc
Q 000737 1036 PTVRGLCLRGLVQIPS-IHIHQYATQVLSVILALLDDL-----DESVQLTAVSCLLTILK 1089 (1322)
Q Consensus 1036 ~~VR~lalrGLg~l~~-~~v~~~~~~lL~all~~L~d~-----d~~V~leam~~L~~ll~ 1089 (1322)
..|-.-|+.=..|=.. .-+..+...++|.++..|+.. +..|.-.|..+|.-+.+
T Consensus 311 ~qVAErAl~~w~n~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~ 370 (409)
T PF01603_consen 311 FQVAERALYFWNNEYFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILME 370 (409)
T ss_dssp HHHHHHHHGGGGSHHHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 9997766665555432 344566777888888888873 35677777777776664
No 230
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=33.33 E-value=7.7e+02 Score=28.20 Aligned_cols=133 Identities=17% Similarity=0.141 Sum_probs=68.5
Q ss_pred HHHHHHHhhcccCChH---HHHH-HHHHHHHHhccCCcccchhhHHhHHHHhccccccCC--hhHHHHHHHHHHHHhhcc
Q 000737 1060 QVLSVILALLDDLDES---VQLT-AVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMN--VKMRRNAFAAFGALSNFG 1133 (1322)
Q Consensus 1060 ~lL~all~~L~d~d~~---V~le-am~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~--~~vR~aAi~lfG~L~~~~ 1133 (1322)
..++.++..+...++. +.-. .-..|.+++..+.+.+..+ |..+.++++ .=+|.+|+++++.++..+
T Consensus 73 ~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~G~~~~--------L~~li~~~~~~~yvR~aa~~aL~~l~~~~ 144 (249)
T PF06685_consen 73 RALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGDGDIEP--------LKELIEDPDADEYVRMAAISALAFLVHEG 144 (249)
T ss_pred hhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhCCCHHH--------HHHHHhCCcHHHHHHHHHHHHHHHHHHcC
Confidence 3466666666544321 1111 2233444444444443332 334556655 459999999999999844
Q ss_pred CCcchHhHHHHHHHhHHHHHH-hccCCChhHHHHHHHHH-HhhcchhhhhhhhhhccccCCCCCCCChHHHHHHH
Q 000737 1134 VGSQREAFLEQIHAMLPRLIL-HIYDDDLSVRQACRNTL-KQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDL 1206 (1322)
Q Consensus 1134 ~~~~~~~~~eqv~~~LvpLLl-HL~D~~~~V~~ack~tL-~~~a~~L~~~l~~lf~~~~~~~~~~l~~~~f~~~~ 1206 (1322)
.. -+++|.+.+..++- ++...+..|-..=-.+. --++.=|-..++.+|.......+ ..+.+++-..+
T Consensus 145 ~~-----~Re~vi~~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~~~f~~~lVd~~-~i~~e~ve~~l 213 (249)
T PF06685_consen 145 PI-----SREEVIQYFRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIRKAFEDGLVDPS-FIDLEDVEEAL 213 (249)
T ss_pred CC-----CHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHHHHHHcCCCCcc-ccCHHHHHHHH
Confidence 32 25677777777776 35444333222111111 12222233366777877644332 34555554433
No 231
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=31.48 E-value=3.3e+02 Score=27.77 Aligned_cols=90 Identities=10% Similarity=0.102 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhhHHHHHHHHHHhcccCchhhhhhccHHHHHHHHHHHhccCCC--hH
Q 000737 1202 FVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSAD--AI 1279 (1322)
Q Consensus 1202 f~~~~~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpd--p~ 1279 (1322)
..-++|-.+-.. ++.....+...-.-++++.+.+..-|...+..++++-......++........|.. +..++. |.
T Consensus 20 ~~l~icD~i~~~-~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~-l~~~~~~~~~ 97 (133)
T smart00288 20 LILEICDLINST-PDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVK-LIKPKYPLPL 97 (133)
T ss_pred HHHHHHHHHhCC-CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHH-HHcCCCCcHH
Confidence 335778777555 67777778888889999999999999999999998876655555666667777877 555433 34
Q ss_pred HHHHHHHHHHHHHH
Q 000737 1280 VRATCSSSLGWLLK 1293 (1322)
Q Consensus 1280 VR~~Aa~aL~~l~k 1293 (1322)
|+.++.+.+..-..
T Consensus 98 Vk~kil~li~~W~~ 111 (133)
T smart00288 98 VKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888887665543
No 232
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=31.09 E-value=8.9e+02 Score=31.82 Aligned_cols=92 Identities=14% Similarity=0.133 Sum_probs=50.0
Q ss_pred hCChhHHHHHHHHHhhhcccCccchHHHHHHHHHHhhcCCc-hhchHHH--HHHHHHhhcCCCChhHHhhhhhcccCCCc
Q 000737 975 KRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGG-FDSLLEQ--MVEALCRHVSDESPTVRGLCLRGLVQIPS 1051 (1322)
Q Consensus 975 ~~~~~~~~il~~l~~~l~s~~~~~Ri~a~aflsEll~~~~~-~~~ll~~--~~~~L~~~l~D~~~~VR~lalrGLg~l~~ 1051 (1322)
+..+.++.++.++ .++++... +.+|++.+.+..... ......+ -+..|..-+..++..|++-+.=+|-|+..
T Consensus 230 w~d~~lpe~i~mL----~~q~~~~q-snaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf 304 (717)
T KOG1048|consen 230 WRDPTLPEVISML----MSQDPSVQ-SNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVF 304 (717)
T ss_pred ccccccHHHHHHH----hccChhhh-HHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhc
Confidence 3444555555444 34444444 444555555543322 2223333 46678888999999999888777777753
Q ss_pred ------hhHhhhHhHHHHHHHhhccc
Q 000737 1052 ------IHIHQYATQVLSVILALLDD 1071 (1322)
Q Consensus 1052 ------~~v~~~~~~lL~all~~L~d 1071 (1322)
+|+..-...=+++++..|..
T Consensus 305 ~~~~~~NKlai~~~~Gv~~l~~~Lr~ 330 (717)
T KOG1048|consen 305 GKSTDSNKLAIKELNGVPTLVRLLRH 330 (717)
T ss_pred ccCCcccchhhhhcCChHHHHHHHHh
Confidence 23322222225556666654
No 233
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=31.05 E-value=67 Score=24.71 Aligned_cols=28 Identities=29% Similarity=0.145 Sum_probs=23.2
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHH
Q 000737 1264 VFGLLVVKLSQSADAIVRATCSSSLGWLL 1292 (1322)
Q Consensus 1264 l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1292 (1322)
.++.|.. |++++++.|+..|..||+.+.
T Consensus 13 ~i~~L~~-ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVE-LLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHH-HHcCCCHHHHHHHHHHHHHHc
Confidence 4566777 677889999999999998863
No 234
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=30.77 E-value=1.5e+02 Score=35.92 Aligned_cols=99 Identities=18% Similarity=0.154 Sum_probs=0.0
Q ss_pred hCcHHHHHHHHhcC-CCC----chhhHHHhHHHHHHHHhhhCChhHHHHHHHHHhhhcccCccchHHHHHH-HHHHhhcC
Q 000737 940 VGDLEMRKILARDG-EQN----DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAA-LSEFVRYS 1013 (1322)
Q Consensus 940 ~g~~~~~~~Le~~~-~w~----~~~~~~~GV~lLar~l~~~~~~~~~~il~~l~~~l~s~~~~~Ri~a~af-lsEll~~~ 1013 (1322)
+...+..+.+.... .|. +...|.+-+..+-. -.-.|+..|..+|.+.+++.=+..+++ ++|++++.
T Consensus 327 sSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlne--------nnyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~y 398 (442)
T KOG2759|consen 327 SSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNE--------NNYELLKILIKLLETSNDPIILCVACHDIGEYVRHY 398 (442)
T ss_pred ccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhh--------ccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhC
Q ss_pred CchhchHHH--HHHHHHhhcCCCChhHHhhhhhcc
Q 000737 1014 GGFDSLLEQ--MVEALCRHVSDESPTVRGLCLRGL 1046 (1322)
Q Consensus 1014 ~~~~~ll~~--~~~~L~~~l~D~~~~VR~lalrGL 1046 (1322)
+....+++. .-..+.+.++++||.||-=||.+.
T Consensus 399 P~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlav 433 (442)
T KOG2759|consen 399 PEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAV 433 (442)
T ss_pred chHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHH
No 235
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=30.72 E-value=5.9e+02 Score=27.61 Aligned_cols=65 Identities=25% Similarity=0.176 Sum_probs=51.6
Q ss_pred HHHHHHhhcCCCChhHHhhhhhcccCCCchhHhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhcc
Q 000737 1023 MVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKS 1090 (1322)
Q Consensus 1023 ~~~~L~~~l~D~~~~VR~lalrGLg~l~~~~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~ 1090 (1322)
+.+.+.+|.+++|+-+|+.++.++-..... .+.+.++..+-..+.|.+.-|.+..-.+|..+...
T Consensus 121 ~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~---~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~ 185 (213)
T PF08713_consen 121 ALELLEKWAKSDNEWVRRAAIVMLLRYIRK---EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK 185 (213)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHCTTTHGGG---CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh
Confidence 577899999999999999999888655432 45567888888888888778888888888887754
No 236
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=30.69 E-value=86 Score=31.69 Aligned_cols=67 Identities=19% Similarity=0.304 Sum_probs=44.2
Q ss_pred ChhhhhhcccccchhhHHHHHHhhhcCCChhh---hhcchHHHHHHHHHhh--------hcccHHHHHHHHHHHHHHh
Q 000737 1 MFLLNKCRLKEEHLSVGALYVLKHLLPRSSEA---WHSKRPLLLEAVKSLL--------DEQNLAVQKAISELIVVMA 67 (1322)
Q Consensus 1 ~fll~~l~~~~E~~Rvg~L~vlrhlins~~~~---~~~k~~~i~~~~k~~l--------~d~~~kVr~a~~~~I~ama 67 (1322)
+||+.+|+.++-.++.++|.||+|++....+. +--+...+|...+.-- .+++-+||.+-=+++.++-
T Consensus 41 d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 41 EYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred HHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence 48999999988899999999999999865433 2233344554443322 2345567776666665543
No 237
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=30.03 E-value=3.5e+02 Score=28.15 Aligned_cols=89 Identities=9% Similarity=0.087 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChhhHHHHHHHHHHhcccCchhhhhhccHHHHHHHHHHHhccC-CChHH
Q 000737 1202 FVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQS-ADAIV 1280 (1322)
Q Consensus 1202 f~~~~~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~D-pdp~V 1280 (1322)
..-++|-.+-.. +......+.....-++++.+++.--|..++..++++-......++......+.|.. +..+ .++.|
T Consensus 20 ~il~icD~I~~~-~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~k-l~~~~~~~~V 97 (144)
T cd03568 20 LILDVCDKVKSD-ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKK-LINDRVHPTV 97 (144)
T ss_pred HHHHHHHHHhcC-CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHH-HhcccCCHHH
Confidence 345778777655 67777777777788999999999999999999999887666666767778888888 6777 89999
Q ss_pred HHHHHHHHHHHH
Q 000737 1281 RATCSSSLGWLL 1292 (1322)
Q Consensus 1281 R~~Aa~aL~~l~ 1292 (1322)
+.++.+-+....
T Consensus 98 k~kil~li~~W~ 109 (144)
T cd03568 98 KEKLREVVKQWA 109 (144)
T ss_pred HHHHHHHHHHHH
Confidence 998877765543
No 238
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.81 E-value=1.9e+02 Score=38.51 Aligned_cols=81 Identities=16% Similarity=0.179 Sum_probs=63.5
Q ss_pred hHHhHHHHhccccccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHHhccCCChhHHHHHHHHHHhhcchh
Q 000737 1099 ILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFM 1178 (1322)
Q Consensus 1099 ~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L 1178 (1322)
+..+|..|...|+.+++-.+|..|..+|..-..+- .....-+.--||+++++++-.+.+.||-++..|-.++..++..-
T Consensus 800 iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~L-a~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~s 878 (1014)
T KOG4524|consen 800 IVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLL-ATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYS 878 (1014)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHH-hccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHh
Confidence 44566666778999999999999999987755421 24556677889999999999999999999998877777766544
Q ss_pred hh
Q 000737 1179 EI 1180 (1322)
Q Consensus 1179 ~~ 1180 (1322)
|-
T Consensus 879 gD 880 (1014)
T KOG4524|consen 879 GD 880 (1014)
T ss_pred hh
Confidence 43
No 239
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=29.80 E-value=9.4e+02 Score=34.18 Aligned_cols=227 Identities=16% Similarity=0.169 Sum_probs=123.0
Q ss_pred CCC-ChhHHhhhhhcccCCCchhHhhh-----HhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhHHH
Q 000737 1032 SDE-SPTVRGLCLRGLVQIPSIHIHQY-----ATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSV 1105 (1322)
Q Consensus 1032 ~D~-~~~VR~lalrGLg~l~~~~v~~~-----~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~ 1105 (1322)
+|+ +-..|+++.-+|.|+..-+++.. ....+.|++.-|...-+++ ...+..||..|.|..=... ..+
T Consensus 360 nd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL----~QV~AsvLRNLSWRAD~nm-Kkv-- 432 (2195)
T KOG2122|consen 360 NDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEEL----LQVYASVLRNLSWRADSNM-KKV-- 432 (2195)
T ss_pred CcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHH----HHHHHHHHHhccccccccH-HHH--
Confidence 443 56789999999999986333211 2456888888887643332 3455566667766532111 111
Q ss_pred HhccccccCChhHHHHHHHHHHHHhhccCCcchHhHHHHHHHhHHHHHHhccCCChhHHHHHHHHHHhhcchhhhhhhhh
Q 000737 1106 RLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGI 1185 (1322)
Q Consensus 1106 ~lrpffede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~~~l~~l 1185 (1322)
|++ -..|-+.| ..+ ....++.-..-|+.+|--|--|..+.-.++.. .-.||+-++..|-.+-..=
T Consensus 433 -LrE-----~GsVtaLa-----~~a---l~~~kEsTLKavLSALWNLSAHcteNKA~iCa-VDGALaFLVg~LSY~~qs~ 497 (2195)
T KOG2122|consen 433 -LRE-----TGSVTALA-----ACA---LRNKKESTLKAVLSALWNLSAHCTENKAEICA-VDGALAFLVGTLSYEGQSN 497 (2195)
T ss_pred -HHh-----hhhHHHHH-----HHH---HHhcccchHHHHHHHHhhhhhcccccchhhhc-ccchHHHHHhhccccCCcc
Confidence 111 11111111 111 12233444556677777777787765444321 1122222222221110000
Q ss_pred hccccCCCCCCCChHHHHHHHHHHHHHhCcc----hHHHHHHHHHhhhcCCChhhHHHHHHHHHHhcccCc----hhhhh
Q 000737 1186 FNSHCFNSDHRSDYETFVRDLTRQFVQHFPS----RIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCD----DQHIL 1257 (1322)
Q Consensus 1186 f~~~~~~~~~~l~~~~f~~~~~k~L~~~~~~----~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~----~~~~~ 1257 (1322)
+-+ ..+.+++ +++.+..++....+= +-+.++...++.|||..-.|=.||+ |.|-+..- +|+.
T Consensus 498 tLa-IIEsaGG-----ILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaC---GTLWNLSAR~p~DQq~- 567 (2195)
T KOG2122|consen 498 TLA-IIESAGG-----ILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNAC---GTLWNLSARSPEDQQM- 567 (2195)
T ss_pred hhh-hhhcCcc-----HHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecch---hhhhhhhcCCHHHHHH-
Confidence 000 0112212 666666666544332 2344688889999999999999998 87765322 2322
Q ss_pred hccHHHHHHHHHHHhccCCChHHHHHHHHHHHHHH
Q 000737 1258 SLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1292 (1322)
Q Consensus 1258 ~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1292 (1322)
+=..-.+..|.. |.+....++-+.++.||..+.
T Consensus 568 -LwD~gAv~mLrn-LIhSKhkMIa~GSaaALrNLl 600 (2195)
T KOG2122|consen 568 -LWDDGAVPMLRN-LIHSKHKMIAMGSAAALRNLL 600 (2195)
T ss_pred -HHhcccHHHHHH-HHhhhhhhhhhhHHHHHHHHh
Confidence 211224566777 788899999999999999887
No 240
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=29.07 E-value=5.7e+02 Score=28.87 Aligned_cols=114 Identities=14% Similarity=0.145 Sum_probs=67.9
Q ss_pred ccCCChhHHHHHHHHHHhhcch-hhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCCh
Q 000737 1156 IYDDDLSVRQACRNTLKQVAPF-MEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWP 1234 (1322)
Q Consensus 1156 L~D~~~~V~~ack~tL~~~a~~-L~~~l~~lf~~~~~~~~~~l~~~~f~~~~~k~L~~~~~~~~~~~l~~~l~ylkS~~~ 1234 (1322)
|+|+++.|.+.+-.+...+=++ +.|- .. .....+.|..+.+ +=.+.+..+++..+
T Consensus 2 l~d~d~~v~K~~I~~~~~iy~~~~~~i-----~~-----------~~~~~~~W~~~~~--------lK~~Il~~~~~~~~ 57 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSIYPLVFRWI-----CV-----------NPSDEQLWESMNE--------LKDRILSLWDSENP 57 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHHHHHHHHHH-----S-------------HHHHHHHHHHHH--------HHHHHHHGGGSSSH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHH-----cC-----------CchHHHHHHHHHH--------HHHHHHHHhcCCCc
Confidence 6799999999888777665543 2221 11 1123344544432 44566778999999
Q ss_pred hhHHHHHHHHHHhcccCc--hh--------------------hh------hhccHHHHHHHHHHHhccCC-ChHHHHHHH
Q 000737 1235 IIQANAIYFSSSILCLCD--DQ--------------------HI------LSLFYTQVFGLLVVKLSQSA-DAIVRATCS 1285 (1322)
Q Consensus 1235 ~IR~aA~~fiG~l~~~l~--~~--------------------~~------~~~~~e~l~~~L~~~Ll~Dp-dp~VR~~Aa 1285 (1322)
.||-+|+.|+-.++.... +. |- .+-+-..++..|...+..++ ++.+=....
T Consensus 58 gvk~~~iKFle~vIl~qs~~~~~~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~i 137 (239)
T PF11935_consen 58 GVKLAAIKFLERVILVQSPGSSDSPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHISSPLLTAII 137 (239)
T ss_dssp HHHHHHHHHHHHHHHHTS---TTS---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCCccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHH
Confidence 999999999987763211 00 00 00113346666777455555 577777777
Q ss_pred HHHHHHHH
Q 000737 1286 SSLGWLLK 1293 (1322)
Q Consensus 1286 ~aL~~l~k 1293 (1322)
-+|..+.|
T Consensus 138 nsL~~Iak 145 (239)
T PF11935_consen 138 NSLSNIAK 145 (239)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777765
No 241
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=28.40 E-value=40 Score=24.69 Aligned_cols=28 Identities=21% Similarity=0.253 Sum_probs=20.5
Q ss_pred hHHhhhhhcccCCCchhHhhhHhHHHHHHHhhccc
Q 000737 1037 TVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDD 1071 (1322)
Q Consensus 1037 ~VR~lalrGLg~l~~~~v~~~~~~lL~all~~L~d 1071 (1322)
.||..+..+||+++.+ ..++.+...|.|
T Consensus 2 ~vR~~aa~aLg~~~~~-------~a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLGDE-------EAVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcCCH-------hHHHHHHHHhcC
Confidence 6899999999999753 345666666654
No 242
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=28.02 E-value=5.2e+02 Score=33.48 Aligned_cols=120 Identities=20% Similarity=0.292 Sum_probs=80.0
Q ss_pred hhHhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccc-cc----------cCChhHHH
Q 000737 1052 IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNL-QV----------SMNVKMRR 1120 (1322)
Q Consensus 1052 ~~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpf-fe----------de~~~vR~ 1120 (1322)
+..+.+.+.++.-+.+.+.+.+..+..++..++.++...++|..-.+++- ++...-+. |- +.++-+-.
T Consensus 238 ~~sh~~l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi~-ii~~~~en~~~s~l~~~cdii~tnel~w~ 316 (993)
T COG5234 238 EESHIYLEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESFID-IIELMTENMFLSPLENTCDIIITNELVWH 316 (993)
T ss_pred cchhHHHHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHHHH-HHHhcccccchhhhhCccceeecchHHHH
Confidence 44667778888888888888888999999999999999999887777654 55544433 11 24445666
Q ss_pred HHHHHHHHHhhccCCcc-------------------------------------------hHhHHHHHHHhHHHHHH--h
Q 000737 1121 NAFAAFGALSNFGVGSQ-------------------------------------------REAFLEQIHAMLPRLIL--H 1155 (1322)
Q Consensus 1121 aAi~lfG~L~~~~~~~~-------------------------------------------~~~~~eqv~~~LvpLLl--H 1155 (1322)
.+|.-|| +++.+.-+- ...+-+++..+|.-|++ -
T Consensus 317 ~~i~~~a-la~~~~id~~d~~i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~lqt~L~hll~~~a 395 (993)
T COG5234 317 GAILFFA-LAGAGLIDYSDCLILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHLLLQTA 395 (993)
T ss_pred HHHHHHH-HhhccccchhhhhhhhheccccceeehheeeeccceeecccceeeeeeeeccccccchhHHHHHHHHHHhhh
Confidence 6776666 544211110 12233344444555554 3
Q ss_pred ccCCChhHHHHHHHHHHh
Q 000737 1156 IYDDDLSVRQACRNTLKQ 1173 (1322)
Q Consensus 1156 L~D~~~~V~~ack~tL~~ 1173 (1322)
+-|++..||.++..||..
T Consensus 396 lFDpel~vRr~a~Aal~E 413 (993)
T COG5234 396 LFDPELNVRRAATAALFE 413 (993)
T ss_pred hcCchhhhhhHHHHHHHH
Confidence 669999999998888754
No 243
>PF10304 DUF2411: Domain of unknown function (DUF2411); InterPro: IPR019414 This entry represents a 38 residue domain of unknown function that is found at the extreme C-terminal end of some HEAT repeats.
Probab=27.72 E-value=1.2e+02 Score=23.90 Aligned_cols=30 Identities=23% Similarity=0.276 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHH
Q 000737 1262 TQVFGLLVVKLSQSADAIVRATCSSSLGWL 1291 (1322)
Q Consensus 1262 e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l 1291 (1322)
+.+...|...-..|+|+.||.-|..+|..|
T Consensus 4 ~~l~r~Lk~V~~~D~D~lvr~hA~~~Le~L 33 (36)
T PF10304_consen 4 EDLYRTLKYVESTDNDDLVREHAQDALEEL 33 (36)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 556666766556899999999999998765
No 244
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=27.46 E-value=1.5e+03 Score=29.45 Aligned_cols=209 Identities=14% Similarity=0.077 Sum_probs=116.4
Q ss_pred hhhcccCccchHHHHH---HHHHHhhcCCc--hhchH-HHHHHHHHhhcCCCChhHHhhhhhcccCCCchhHh-----hh
Q 000737 989 KSINRQQRFQREAAAA---ALSEFVRYSGG--FDSLL-EQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIH-----QY 1057 (1322)
Q Consensus 989 ~~l~s~~~~~Ri~a~a---flsEll~~~~~--~~~ll-~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~~~v~-----~~ 1057 (1322)
..+++..+..|..++. ...++-.+..- ...++ ..+...+....-..+..++.+++--+-+.+. -|. ..
T Consensus 338 ~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~sr-sV~aL~tg~~ 416 (678)
T KOG1293|consen 338 ASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSR-SVSALRTGLK 416 (678)
T ss_pred HHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHH-HHHHHHcCCc
Confidence 4556677777766532 33333322211 11223 3345555555555566777665433332221 000 00
Q ss_pred HhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccCCcc
Q 000737 1058 ATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQ 1137 (1322)
Q Consensus 1058 ~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~ 1137 (1322)
...+...++..|-|++..|...+..++-+++-.-+.-.-.-+--+...++-....+....+|+.+...+.++.-.+..+.
T Consensus 417 ~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~ 496 (678)
T KOG1293|consen 417 RNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEE 496 (678)
T ss_pred cchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHH
Confidence 11234445555567777888888888888874333222222223445566677788899999999999999987554444
Q ss_pred hHhHHHHHHHhHHHHHHhccCCChhHHHHHHHHHHhhcchhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcch
Q 000737 1138 REAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSR 1217 (1322)
Q Consensus 1138 ~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~~~l~~lf~~~~~~~~~~l~~~~f~~~~~k~L~~~~~~~ 1217 (1322)
++.+...+....+ +...+|+++.|-.+|---|+... .+ + ++...++.+++++.
T Consensus 497 k~~~~~ki~a~~i--~~l~nd~d~~Vqeq~fqllRNl~-----------------c~-~-------~~svdfll~~~~~~ 549 (678)
T KOG1293|consen 497 KFQLLAKIPANLI--LDLINDPDWAVQEQCFQLLRNLT-----------------CN-S-------RKSVDFLLEKFKDV 549 (678)
T ss_pred HHHHHHHhhHHHH--HHHHhCCCHHHHHHHHHHHHHhh-----------------cC-c-------HHHHHHHHHhhhHH
Confidence 4444444444332 23568999999999855544421 11 0 13345667777777
Q ss_pred HHHHHHHH
Q 000737 1218 IDSYMGST 1225 (1322)
Q Consensus 1218 ~~~~l~~~ 1225 (1322)
++.-..|.
T Consensus 550 ld~i~l~l 557 (678)
T KOG1293|consen 550 LDKIDLQL 557 (678)
T ss_pred HHHHHHHH
Confidence 66655554
No 245
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=27.37 E-value=3.7e+02 Score=30.02 Aligned_cols=144 Identities=13% Similarity=0.115 Sum_probs=76.7
Q ss_pred ChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCC-----hhHHHHHHHHHHHHhhccCCcchHhHHHHHHH
Q 000737 1073 DESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMN-----VKMRRNAFAAFGALSNFGVGSQREAFLEQIHA 1147 (1322)
Q Consensus 1073 d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~-----~~vR~aAi~lfG~L~~~~~~~~~~~~~eqv~~ 1147 (1322)
...-+..|+..|..+..+-+.+.+ -.--++..-|-||+.-.+ +-+|..|.+..|+|.+.+ ..+..+--.-.
T Consensus 113 ~snRvcnaL~lLQclaShPetk~~-Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNd---sq~vi~fLltT 188 (315)
T COG5209 113 ESNRVCNALNLLQCLASHPETKKV-FLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKND---SQYVIKFLLTT 188 (315)
T ss_pred hhhHHHHHHHHHHHHhcCcchhee-eeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCC---CHHHHHHHHhh
Confidence 344666777777777655332211 111112222345554322 349999999999999843 22222222335
Q ss_pred hHHHHHHhccCCChhHHHHH-HHHHHhhcchhhhhhhhhhccccCCCCCCCCh-----------HHHHHHHHHHHHHhCc
Q 000737 1148 MLPRLILHIYDDDLSVRQAC-RNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDY-----------ETFVRDLTRQFVQHFP 1215 (1322)
Q Consensus 1148 ~LvpLLlHL~D~~~~V~~ac-k~tL~~~a~~L~~~l~~lf~~~~~~~~~~l~~-----------~~f~~~~~k~L~~~~~ 1215 (1322)
-+|||.+...|...+..+.. .+-++ .++ +++.++.| ...++++..+++...+
T Consensus 189 eivPLcLrIme~gSElSktvaifI~q---kil-------------~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~ 252 (315)
T COG5209 189 EIVPLCLRIMELGSELSKTVAIFIFQ---KIL-------------GDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGS 252 (315)
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHH---HHh-------------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 67999999999877765432 22222 222 22223333 2345666777777776
Q ss_pred chHHHHHHHHHhhhc-CCChhhHH
Q 000737 1216 SRIDSYMGSTIQAFE-APWPIIQA 1238 (1322)
Q Consensus 1216 ~~~~~~l~~~l~ylk-S~~~~IR~ 1238 (1322)
.++-..+..| |++ |..+++|+
T Consensus 253 ~RLlKh~iRc--YlRLsd~p~aR~ 274 (315)
T COG5209 253 TRLLKHAIRC--YLRLSDKPHARA 274 (315)
T ss_pred hhHHHHHHHH--heeecCCHhHHH
Confidence 6644333222 444 44566665
No 246
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=26.85 E-value=1.3e+02 Score=30.60 Aligned_cols=65 Identities=22% Similarity=0.375 Sum_probs=51.5
Q ss_pred hhhhhcccccchhhHHHHHHhhhcCCChhhhh---cchHHHHHHHHHhhh---cccHHHHHHHHHHHHHHhh
Q 000737 3 LLNKCRLKEEHLSVGALYVLKHLLPRSSEAWH---SKRPLLLEAVKSLLD---EQNLAVQKAISELIVVMAS 68 (1322)
Q Consensus 3 ll~~l~~~~E~~Rvg~L~vlrhlins~~~~~~---~k~~~i~~~~k~~l~---d~~~kVr~a~~~~I~ama~ 68 (1322)
|..+|..++.....-||.+|-.++..+++.+. ..+.++.+ +..++. ..+..||+-++++|...+.
T Consensus 42 L~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~-l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 42 IRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLE-LVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHH-HHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999887654 33455666 444553 4688999999999988875
No 247
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=26.38 E-value=1e+03 Score=30.10 Aligned_cols=106 Identities=16% Similarity=0.125 Sum_probs=72.8
Q ss_pred HHHHHhhcCCC--ChhHHhhhhhcc---cCC----CchhHhhhHhHHHHHHHhhccc--------CChHHHHHHHHHHHH
Q 000737 1024 VEALCRHVSDE--SPTVRGLCLRGL---VQI----PSIHIHQYATQVLSVILALLDD--------LDESVQLTAVSCLLT 1086 (1322)
Q Consensus 1024 ~~~L~~~l~D~--~~~VR~lalrGL---g~l----~~~~v~~~~~~lL~all~~L~d--------~d~~V~leam~~L~~ 1086 (1322)
+.+...++..+ +..+|.++++=+ .+. +...+...++.++..+...+++ .+...+.-+..+|+.
T Consensus 321 ~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~ 400 (501)
T PF13001_consen 321 LQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGL 400 (501)
T ss_pred HHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHH
Confidence 44555566666 667777776655 443 3355677777888877777741 134588888899999
Q ss_pred HhccCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhh
Q 000737 1087 ILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN 1131 (1322)
Q Consensus 1087 ll~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~ 1131 (1322)
|+.+.+.-.... ..++..+..-++++.+++|.+-=++++.++.
T Consensus 401 L~~~~p~l~~~d--~~li~~LF~sL~~~~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 401 LAKRAPSLFSKD--LSLIEFLFDSLEDESPEVRVSIQEALSSLAP 443 (501)
T ss_pred HHccCccccccc--HHHHHHHHHHhhCcchHHHHHHHHHHHHHHH
Confidence 987765432222 3555556555599999999999999999997
No 248
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=26.34 E-value=1.3e+03 Score=28.54 Aligned_cols=64 Identities=8% Similarity=0.013 Sum_probs=42.6
Q ss_pred cCCChhhHHHHHHHHHHHHhhccCccccccHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHhh
Q 000737 752 CDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAEN 815 (1322)
Q Consensus 752 ~d~~~~~~~~A~~~L~~~l~~~g~~L~e~~V~eI~~~i~~~L~~i~~~~~r~~~l~aI~lLa~~ 815 (1322)
...+......|+.+|..++........+.+.+.+++.+..++........+..+++.+..|.+.
T Consensus 111 ~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~ 174 (429)
T cd00256 111 NRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV 174 (429)
T ss_pred cCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC
Confidence 3456677888999999988654443322234456777887887666566666667777666665
No 249
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=25.95 E-value=1.7e+03 Score=29.81 Aligned_cols=84 Identities=14% Similarity=0.137 Sum_probs=57.2
Q ss_pred HHHHhCcchHHHHHHHHHh-----hhcCCChhhHHHHHHHHHHhcccCchhhhhhccHHH-HHHHHHHHhccCCChHHHH
Q 000737 1209 QFVQHFPSRIDSYMGSTIQ-----AFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQ-VFGLLVVKLSQSADAIVRA 1282 (1322)
Q Consensus 1209 ~L~~~~~~~~~~~l~~~l~-----ylkS~~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~-l~~~L~~~Ll~Dpdp~VR~ 1282 (1322)
.++.+.|+.++.|....++ |-.|-.++||.---..|+.++.....+.+..+-... +-..+-. ++.-.|+-|-.
T Consensus 540 ~~l~nqpel~q~F~~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG-~lsskD~~vlV 618 (1051)
T KOG0168|consen 540 GLLKNQPELLQSFGKDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAG-MLSSKDLTVLV 618 (1051)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHh-hhhcCCCeeEe
Confidence 5667889999999988665 788999999998888888888777766665432222 2233333 55556666666
Q ss_pred HHHHHHHHHHH
Q 000737 1283 TCSSSLGWLLK 1293 (1322)
Q Consensus 1283 ~Aa~aL~~l~k 1293 (1322)
.|.|-...|.+
T Consensus 619 gALQvAEiLme 629 (1051)
T KOG0168|consen 619 GALQVAEILME 629 (1051)
T ss_pred ehHHHHHHHHH
Confidence 66666665553
No 250
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=25.89 E-value=3.8e+02 Score=34.18 Aligned_cols=85 Identities=14% Similarity=0.154 Sum_probs=55.3
Q ss_pred hhccccChHHHHHHHHHHhhhccCC---CChhhHhHHHHHHHHHHHhc------CChhHHHHHHHHHHHhcCcCCccchh
Q 000737 268 LDVVQETDWLISLGNAFTEQYVLYT---PDDDHSALLHRCLGILLQKV------ADRNYVCDKIDWMYKQANIAIPTNRL 338 (1322)
Q Consensus 268 l~~i~d~~W~~~L~~el~~q~~~y~---~~~~eK~fL~k~~G~~L~~~------~~~~~V~~~L~~ll~~~~~~~~~ere 338 (1322)
-..++|.+|.++=.+.++=-+.+-. +...||.|+...+--.|+-| +||++|.+.+.-.+.+ | |
T Consensus 487 arq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvGQ--Y--p---- 558 (1053)
T COG5101 487 ARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVGQ--Y--P---- 558 (1053)
T ss_pred HHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeeecc--c--h----
Confidence 3567889999876666665555544 44789999998776666644 7888887666554441 1 1
Q ss_pred hHHHHHHHHhhhcHHHHHHHHHHHHh
Q 000737 339 GLAKAMGLVAASHLDAVLEMLKGILD 364 (1322)
Q Consensus 339 G~A~~~G~~A~~Hld~vL~~L~~~~~ 364 (1322)
-|=.+--+-|.+|..||=+|..
T Consensus 559 ----RFLkahw~FLkTVv~KLFEFMh 580 (1053)
T COG5101 559 ----RFLKAHWSFLKTVVKKLFEFMH 580 (1053)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHh
Confidence 1222344567888888877764
No 251
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.89 E-value=1.7e+02 Score=35.34 Aligned_cols=67 Identities=22% Similarity=0.289 Sum_probs=53.9
Q ss_pred HHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhh
Q 000737 1064 VILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN 1131 (1322)
Q Consensus 1064 all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~ 1131 (1322)
-++.-+...+..|..+|..+|..++-. -...+..-.-.+...+++.+-|++..||..++.++-.++-
T Consensus 62 eLl~qlkHhNakvRkdal~glkd~l~s-~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~ 128 (393)
T KOG2149|consen 62 ELLSQLKHHNAKVRKDALNGLKDLLKS-HPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLIL 128 (393)
T ss_pred HHHhhhcCchHhhhHHHHHHHHHHHHh-ChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHh
Confidence 345556666888999999999999976 3344555566788899999999999999999999988665
No 252
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.80 E-value=2.9e+02 Score=36.13 Aligned_cols=123 Identities=11% Similarity=0.121 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhhcchhhhhhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCChh---hH
Q 000737 1161 LSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPI---IQ 1237 (1322)
Q Consensus 1161 ~~V~~ack~tL~~~a~~L~~~l~~lf~~~~~~~~~~l~~~~f~~~~~k~L~~~~~~~~~~~l~~~l~ylkS~~~~---IR 1237 (1322)
|.|.+.-..+...++|--.-.+++++.++ .-|..| ....+=..+.-+--.||..+.+.=+.....+ ||
T Consensus 434 P~~l~~i~~a~~~~~pt~~~~l~a~L~KD-------AiYaa~--g~~a~~l~~~~dF~~Wl~~~llpEl~~~~~~~RiiR 504 (978)
T KOG1993|consen 434 PPVLDMIYSAQELQSPTVTEDLTALLLKD-------AIYAAF--GLAAYELSNILDFDKWLQEALLPELANDHGNSRIIR 504 (978)
T ss_pred HHHHHHHHHHHhcCCCCccchHHHHHHHH-------HHHHHH--HHHHHHHHhcCCHHHHHHHhhCHHhhhcccchhHHH
Q ss_pred HHHHHHHHHhcccCchhhhhhccHHHHHHHHHHHhccCC-ChHHHHHHHHHHHHHHHHhcc
Q 000737 1238 ANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSA-DAIVRATCSSSLGWLLKSINS 1297 (1322)
Q Consensus 1238 ~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dp-dp~VR~~Aa~aL~~l~k~~~~ 1297 (1322)
+--||++|.-+.---.++. ..-++.++.+ |++|. |-.||-.|++|+......-|+
T Consensus 505 RRVa~ilg~Wvsvq~~~e~----k~l~Y~a~ln-LL~d~~D~vV~Ltt~~tlkl~vDD~nF 560 (978)
T KOG1993|consen 505 RRVAWILGQWVSVQQKLEL----KPLLYCAFLN-LLQDQNDLVVRLTTARTLKLVVDDWNF 560 (978)
T ss_pred HHHHHHHhhhhheechHhH----HHHHHHHHHH-hcCccccceeehHHHHHHHHhhhhccC
No 253
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=25.79 E-value=97 Score=31.18 Aligned_cols=25 Identities=16% Similarity=0.377 Sum_probs=14.5
Q ss_pred HHHhhcccCChHHHHHHHHHHHHHh
Q 000737 1064 VILALLDDLDESVQLTAVSCLLTIL 1088 (1322)
Q Consensus 1064 all~~L~d~d~~V~leam~~L~~ll 1088 (1322)
.+++.+.+.|++|..+|+.++++++
T Consensus 90 ~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 90 RVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3444555556666666666666665
No 254
>PF04003 Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This domain is found at the C terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein. In yeast, these proteins are called Utp5, Utp1 or Pwp2, Utp12 or DIP2 Q12220 from SWISSPROT. They interact with snoRNA U3 and with MPP10 []. Pwp2 is an essential Saccharomyces cerevisiae (Baker's yeast) protein involved in cell separation.
Probab=25.37 E-value=1.7e+02 Score=28.35 Aligned_cols=67 Identities=13% Similarity=0.091 Sum_probs=49.0
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHhhccCccccc--cHHHHHHHHHHHh
Q 000737 727 IVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSET--DVSRTTQSLLSAA 793 (1322)
Q Consensus 727 i~~~i~~~L~~~el~~li~~ll~~L~d~~~~~~~~A~~~L~~~l~~~g~~L~e~--~V~eI~~~i~~~L 793 (1322)
.++.....||......++..+.+.+.-.......-...++..+++.+|..+... +....++.+++.+
T Consensus 17 ~I~~tv~~Lp~~~~~~LL~~l~~~l~~~~~~~~e~~l~Wl~~ll~~H~~~l~~~~~~~~~~L~~L~~~l 85 (110)
T PF04003_consen 17 DIENTVRSLPFSYAERLLQFLSERLQTRKSPHVEFLLRWLKALLKTHGSYLSSSSPELRPVLRSLQKIL 85 (110)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 344556789999999999999998874445678888999999999999998433 2333444444443
No 255
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=25.26 E-value=4.8e+02 Score=26.72 Aligned_cols=88 Identities=11% Similarity=0.062 Sum_probs=59.6
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHhhccCccccccHH--HHHHHHHHHhhhcCc-HH--
Q 000737 726 RIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVS--RTTQSLLSAAVHITD-KH-- 800 (1322)
Q Consensus 726 ~i~~~i~~~L~~~el~~li~~ll~~L~d~~~~~~~~A~~~L~~~l~~~g~~L~e~~V~--eI~~~i~~~L~~i~~-~~-- 800 (1322)
.||..|... +..-.+.+..+-..|..+++....-|-.+|.++++..|..+..+ |+ +.++.+..-+..-.. +.
T Consensus 28 ~icD~i~~~--~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~e-v~~~~fl~~l~~l~~~~~~~~~~~ 104 (140)
T PF00790_consen 28 EICDLINSS--PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHRE-VASKEFLDELVKLIKSKKTDPETP 104 (140)
T ss_dssp HHHHHHHTS--TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHH-HTSHHHHHHHHHHHHHTTTHHHSH
T ss_pred HHHHHHHcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHH-HhHHHHHHHHHHHHccCCCCchhH
Confidence 566665555 44445667777788888888888889999999999999888533 42 344444443333332 32
Q ss_pred HHHHHHHHHHHHHhhc
Q 000737 801 LRLETLGAISCLAENT 816 (1322)
Q Consensus 801 ~r~~~l~aI~lLa~~h 816 (1322)
||..++..|...+..+
T Consensus 105 Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 105 VKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888887777765
No 256
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=25.17 E-value=1.5e+02 Score=30.83 Aligned_cols=65 Identities=25% Similarity=0.368 Sum_probs=51.2
Q ss_pred hhhhhcccccchhhHHHHHHhhhcCCChhhhh---cchHHHHHHHHHhh-hcccHHHHHHHHHHHHHHhh
Q 000737 3 LLNKCRLKEEHLSVGALYVLKHLLPRSSEAWH---SKRPLLLEAVKSLL-DEQNLAVQKAISELIVVMAS 68 (1322)
Q Consensus 3 ll~~l~~~~E~~Rvg~L~vlrhlins~~~~~~---~k~~~i~~~~k~~l-~d~~~kVr~a~~~~I~ama~ 68 (1322)
+..||..+|.+.-.-||.+|-.++..++..+. ..+.++ ..++.++ ..+..+||+-++++|.+.+.
T Consensus 46 l~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl-~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 46 LKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFM-DELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHH-HHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999887654 234444 4444555 47788999999999998874
No 257
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.13 E-value=3.1e+02 Score=36.71 Aligned_cols=60 Identities=10% Similarity=0.174 Sum_probs=46.4
Q ss_pred HHHHHHhhccCCcchHhHHHHHHHhHHHHHHhccCCChhHHHHHHHHHHhhcchhhh-hhhhhhc
Q 000737 1124 AAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFN 1187 (1322)
Q Consensus 1124 ~lfG~L~~~~~~~~~~~~~eqv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~~L~~-~l~~lf~ 1187 (1322)
.-.|..+++. -+.|...++..+.|++.|+.++++.|.+.+..++.+++.-++. .+..+..
T Consensus 570 d~I~~~a~~~----g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~ 630 (1014)
T KOG4524|consen 570 DSIGTIAAVM----GEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIR 630 (1014)
T ss_pred hhhHHHHHHh----HHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 3355555532 2458899999999999999999999999999999999877666 5554444
No 258
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=24.85 E-value=3.1e+02 Score=32.48 Aligned_cols=71 Identities=15% Similarity=0.221 Sum_probs=45.9
Q ss_pred chHHHHHHHHHhhcCCCChhHHhhhhhcccCCCc--hh---------HhhhHhHHHHHHHhhcccCCh-HHHHHHHHHHH
Q 000737 1018 SLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS--IH---------IHQYATQVLSVILALLDDLDE-SVQLTAVSCLL 1085 (1322)
Q Consensus 1018 ~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~--~~---------v~~~~~~lL~all~~L~d~d~-~V~leam~~L~ 1085 (1322)
...+.+++.+.-+.++++..|-..|++.|..+.. .+ .+.|.-.++.-++..+-|.+- ..--.-...|.
T Consensus 161 ~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~ 240 (319)
T PF08767_consen 161 EQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILS 240 (319)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHH
Confidence 3456678889899999999999999999998754 11 133444456666666666542 23333345555
Q ss_pred HHh
Q 000737 1086 TIL 1088 (1322)
Q Consensus 1086 ~ll 1088 (1322)
+++
T Consensus 241 ~Lf 243 (319)
T PF08767_consen 241 NLF 243 (319)
T ss_dssp HHH
T ss_pred HHH
Confidence 555
No 259
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=24.82 E-value=4.6e+02 Score=25.97 Aligned_cols=73 Identities=11% Similarity=0.144 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhccCCChhhHHHHHHHHHHHHhhccCccccccHHHHHHHHHHHhhhcCcHH-HHHHHHHHHHHHHhhc
Q 000737 739 ELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKH-LRLETLGAISCLAENT 816 (1322)
Q Consensus 739 el~~li~~ll~~L~d~~~~~~~~A~~~L~~~l~~~g~~L~e~~V~eI~~~i~~~L~~i~~~~-~r~~~l~aI~lLa~~h 816 (1322)
-+..++-.+.+||........++|++|+...+-.+. .|.+ ++++.+...+....... ..+..+.++..+.+++
T Consensus 3 ~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~-~L~~----~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 3 ILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKV-PLSD----EVLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhc-CCcH----HHHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 356678889999996666789999999999997664 4522 33444444444333222 2355666677777666
No 260
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=24.55 E-value=1.5e+03 Score=29.85 Aligned_cols=294 Identities=13% Similarity=0.104 Sum_probs=146.7
Q ss_pred hhHHHhHHHHHHHHhhhCChhH-HHHHHHHH-hhhcccCccchHHHHHH-----HHHHhhcCCc--------hhchHHHH
Q 000737 959 EKWINLIGDVAGCVSIKRPKEV-QTICLILT-KSINRQQRFQREAAAAA-----LSEFVRYSGG--------FDSLLEQM 1023 (1322)
Q Consensus 959 ~~~~~GV~lLar~l~~~~~~~~-~~il~~l~-~~l~s~~~~~Ri~a~af-----lsEll~~~~~--------~~~ll~~~ 1023 (1322)
+.++.-...+-+.++.-.|..+ ..|-..+. ...+++++++-.+-.|. |+|.+..+.. ...++..+
T Consensus 413 ~e~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~ 492 (980)
T KOG2021|consen 413 EEVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLN 492 (980)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHH
Confidence 3445555556666666555432 23333333 23456667776655444 4676664321 11233333
Q ss_pred HHHHHh--hcCCCChhHHhhhhhcccCCCc--hhHhhhHhHHHHHHHh--hcccCChHHHHHHHHHHHHHhccCCcccch
Q 000737 1024 VEALCR--HVSDESPTVRGLCLRGLVQIPS--IHIHQYATQVLSVILA--LLDDLDESVQLTAVSCLLTILKSSSKDAVE 1097 (1322)
Q Consensus 1024 ~~~L~~--~l~D~~~~VR~lalrGLg~l~~--~~v~~~~~~lL~all~--~L~d~d~~V~leam~~L~~ll~~l~~~~~~ 1097 (1322)
+..+.. -..++++.|.-+=+.-+..-.. ..-.++.|.+|.++++ ||..+++.|+..|-.-..+.+..+. +.+.
T Consensus 493 ~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLk-kqlv 571 (980)
T KOG2021|consen 493 ELLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLK-KQLV 571 (980)
T ss_pred HHHHHHcccccCCchHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHH-HHHH
Confidence 333333 3366777777665544443111 1113345666666654 4555678899999999999988874 5577
Q ss_pred hhHHhHHHHhccccccCChhHHHHHH------------HHHHHHhhccCC--c--------chHhHHHHHHHhHHHHHHh
Q 000737 1098 PILLNLSVRLRNLQVSMNVKMRRNAF------------AAFGALSNFGVG--S--------QREAFLEQIHAMLPRLILH 1155 (1322)
Q Consensus 1098 ~~l~~l~~~lrpffede~~~vR~aAi------------~lfG~L~~~~~~--~--------~~~~~~eqv~~~LvpLLlH 1155 (1322)
|+.-+|..+|.+++...-+.+-+++. +..|-+.....- + .-.|+.++..-.+.-.-+-
T Consensus 572 pfie~iln~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI~l~n~paE~qaay~~~litpl~~~~~igl~~a~la 651 (980)
T KOG2021|consen 572 PFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGVIITLNNSPAELQAAYANTLITPLILDQIIGLLFAQLA 651 (980)
T ss_pred HHHHHHHHHHHHHHcCcCCCcCccccccccccccceeeecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHh
Confidence 89999999998888332222222222 223333321111 1 1122222222222222333
Q ss_pred ccCCChhHHHHHHHHHHhhcchhhh-hhhhhhccccCCCCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHhhhcCCCh
Q 000737 1156 IYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWP 1234 (1322)
Q Consensus 1156 L~D~~~~V~~ack~tL~~~a~~L~~-~l~~lf~~~~~~~~~~l~~~~f~~~~~k~L~~~~~~~~~~~l~~~l~ylkS~~~ 1234 (1322)
-..+.|.+--.|-.++-.+|.+-+- ...-+-.+ +.+.... |.+-.+.++-....+-| .+
T Consensus 652 sde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~-------qvg~~~v-----------f~~~ldvil~~ls~f~k--~E 711 (980)
T KOG2021|consen 652 SDEASPVVIAECHHILMAIGTLAKGFHIRLVTEN-------QVGNMVV-----------FSNILDVILVTLSFFNK--FE 711 (980)
T ss_pred ccccccHHHHHHHHHHHHHHHHhhcccccCcchh-------cccHHHH-----------HHHHHHHHHHHHhhccc--cc
Confidence 3333455666787777777765332 11111001 1111111 22223333333222322 45
Q ss_pred hhHHHHHHHHHHhcccCchhhhhhccHHHHHHHHHHHhccCCChH
Q 000737 1235 IIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAI 1279 (1322)
Q Consensus 1235 ~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~ 1279 (1322)
+||.+.-.|+|.++..+.++-+..+. +++.. |++|-|+-
T Consensus 712 ~iRsavrft~hRmI~~lg~~vlPfip-----klie~-lL~s~d~k 750 (980)
T KOG2021|consen 712 NIRSAVRFTFHRMIPILGNKVLPFIP-----KLIEL-LLSSTDLK 750 (980)
T ss_pred hhHHHHHHHHHHHHHhcchhhhcchH-----HHHHH-HHhcCCHH
Confidence 79998888889998766655543221 22333 66666653
No 261
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=24.48 E-value=3.9e+02 Score=27.66 Aligned_cols=88 Identities=10% Similarity=0.017 Sum_probs=64.7
Q ss_pred HHHHHHHHHhCcchHHHHHHHHHhhhcCCChhhHHHHHHHHHHhcccCchhhhhhccHHHHHHHHHHHhccCCChHHHHH
Q 000737 1204 RDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRAT 1283 (1322)
Q Consensus 1204 ~~~~k~L~~~~~~~~~~~l~~~l~ylkS~~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~ 1283 (1322)
.++|-.+- ..+......+...-.-++++.+++.--|..++..++++.....-.++......+.|...+...+++.|+.+
T Consensus 26 leicD~In-~~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~k 104 (142)
T cd03569 26 LEICDMIR-SKDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQK 104 (142)
T ss_pred HHHHHHHh-CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHH
Confidence 46676654 34555666677777788999999999999999999988765544455567777778874445799999998
Q ss_pred HHHHHHHHH
Q 000737 1284 CSSSLGWLL 1292 (1322)
Q Consensus 1284 Aa~aL~~l~ 1292 (1322)
+.+-+..-.
T Consensus 105 il~li~~W~ 113 (142)
T cd03569 105 ILELIQAWA 113 (142)
T ss_pred HHHHHHHHH
Confidence 888765544
No 262
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=23.65 E-value=1.3e+03 Score=27.51 Aligned_cols=89 Identities=11% Similarity=0.134 Sum_probs=61.1
Q ss_pred HhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhccccccCChhHHHHHHHHHHHHhhccCCcc
Q 000737 1058 ATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQ 1137 (1322)
Q Consensus 1058 ~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpffede~~~vR~aAi~lfG~L~~~~~~~~ 1137 (1322)
..+++.+|.-....++.+ +-..+..+..|+.....+...+....+|.++-+.+++..+.+|..... .|-+ +.+.
T Consensus 45 l~~ii~~c~v~~k~~ekd-le~vlnsi~sLi~~~~~e~~e~~v~a~~ekva~q~n~~~~~l~L~vLs---nLfn--~~d~ 118 (378)
T KOG2753|consen 45 LLMIIEACDVLAKIPEKD-LECVLNSIVSLIKNAPPEKVEEMVKAICEKVAKQPNDKTASLRLQVLS---NLFN--GVDK 118 (378)
T ss_pred HHHHHHHhHHhhcCCcch-HHHHHHHHHHHHHhCCHHHhHHHHHHHHHHHhcCccCCCcccHHHHHH---HHHh--ccCC
Confidence 456777877776665544 444455566666666678889999999999999999999888765443 2323 1223
Q ss_pred hHhHHHHHHHhHHHH
Q 000737 1138 REAFLEQIHAMLPRL 1152 (1322)
Q Consensus 1138 ~~~~~eqv~~~LvpL 1152 (1322)
..|.+.||+.+++.+
T Consensus 119 ~~~aR~~Vy~~lv~l 133 (378)
T KOG2753|consen 119 PTPARYQVYMSLVTL 133 (378)
T ss_pred CchHHHHHHHHHHHH
Confidence 455788888877753
No 263
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=22.95 E-value=1.9e+03 Score=29.13 Aligned_cols=65 Identities=9% Similarity=0.182 Sum_probs=43.3
Q ss_pred hCChhHHHHHHHHH--hhhcccCccchHHHHHHHHHHhhcCCc-hhchHHHHHHHHHhhcCCCChhHH
Q 000737 975 KRPKEVQTICLILT--KSINRQQRFQREAAAAALSEFVRYSGG-FDSLLEQMVEALCRHVSDESPTVR 1039 (1322)
Q Consensus 975 ~~~~~~~~il~~l~--~~l~s~~~~~Ri~a~aflsEll~~~~~-~~~ll~~~~~~L~~~l~D~~~~VR 1039 (1322)
..+.++|.++.++. ..+.+.++.-|.-|-=.|+.++..-.. .....+.+++.+...|+-+.|+.-
T Consensus 526 ~esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~~~vtt~N 593 (980)
T KOG2021|consen 526 TESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLHIKVTTIN 593 (980)
T ss_pred cchhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCcC
Confidence 35568888888776 567788888888888888887765211 113456677777766655545443
No 264
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.75 E-value=2.7e+03 Score=30.86 Aligned_cols=153 Identities=15% Similarity=0.137 Sum_probs=92.1
Q ss_pred chhhHHHhHHHHHHHH-hhhCChhHHHHHHHHHhhhcccCccchHHHH-HHHHHHhhcCCc--hhchHHHHHHHHHhhcC
Q 000737 957 DKEKWINLIGDVAGCV-SIKRPKEVQTICLILTKSINRQQRFQREAAA-AALSEFVRYSGG--FDSLLEQMVEALCRHVS 1032 (1322)
Q Consensus 957 ~~~~~~~GV~lLar~l-~~~~~~~~~~il~~l~~~l~s~~~~~Ri~a~-aflsEll~~~~~--~~~ll~~~~~~L~~~l~ 1032 (1322)
.+..-.-+..-+||-. +...++-+..+.+..+.-++|-.+..+.++. ..++-+.++.+. ...-+.+.+.+|..--.
T Consensus 889 ~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~illal~~ 968 (2067)
T KOG1822|consen 889 NPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSILLALAT 968 (2067)
T ss_pred ChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHHHHHHhh
Confidence 3333333555566642 2335567788999999999988777776664 445555555433 33444555667777778
Q ss_pred CCCh-hHHhhhhhcccCCCc---hhHhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCCcccchhhHHhHHHHhc
Q 000737 1033 DESP-TVRGLCLRGLVQIPS---IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLR 1108 (1322)
Q Consensus 1033 D~~~-~VR~lalrGLg~l~~---~~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lr 1108 (1322)
|+++ .|+.++|++|.-+.. .-.+.+...-+..++..|-. +++...+--.+.++.+.. ..+.+.++-.+-..++
T Consensus 969 Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls-~p~~~~ev~q~~~R~~~~--~~~~~alittlgpeL~ 1045 (2067)
T KOG1822|consen 969 DSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLS-VPTSHVEVHQCYNRCFNG--DDDEDALITTLGPELG 1045 (2067)
T ss_pred cCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCC-CCcchhhhhhhhcccccc--chhHHHHHHhcccccC
Confidence 8765 999999999997765 11245666666666665543 344455555555555542 2334444444445555
Q ss_pred cccc
Q 000737 1109 NLQV 1112 (1322)
Q Consensus 1109 pffe 1112 (1322)
|-++
T Consensus 1046 ~N~~ 1049 (2067)
T KOG1822|consen 1046 PNGD 1049 (2067)
T ss_pred CCCc
Confidence 5444
No 265
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=22.52 E-value=1.3e+02 Score=29.88 Aligned_cols=58 Identities=17% Similarity=0.160 Sum_probs=48.4
Q ss_pred hHHHHHHHHHhhhc-ccCccchHHHHHHHHHHhhcCCchhchHHHHHHHHHhhcCCCCh
Q 000737 979 EVQTICLILTKSIN-RQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESP 1036 (1322)
Q Consensus 979 ~~~~il~~l~~~l~-s~~~~~Ri~a~aflsEll~~~~~~~~ll~~~~~~L~~~l~D~~~ 1036 (1322)
.++.++.++...++ +.....|+++-..++.+..........++.++..+.+.....+.
T Consensus 3 ~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~ 61 (121)
T PF12397_consen 3 ILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV 61 (121)
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh
Confidence 56788889999999 78889999999999999988777777888888888877776655
No 266
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=21.26 E-value=2.2e+02 Score=30.57 Aligned_cols=45 Identities=29% Similarity=0.368 Sum_probs=35.7
Q ss_pred HHHHHHHHhhcCCCChhHHhhhhhcccCCCchhHhhhHhHHHHHHHh
Q 000737 1021 EQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILA 1067 (1322)
Q Consensus 1021 ~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~~~v~~~~~~lL~all~ 1067 (1322)
+..+..|.....| +.||..|++-|.+++++++..|-+|++.|+--
T Consensus 72 ~~aLeLL~~~f~d--~~VR~yAV~~L~~~sd~eL~~yL~QLVQaLKy 116 (171)
T cd00872 72 EQALELLDCNFPD--EHVREFAVRCLEKLSDDELLQYLLQLVQVLKY 116 (171)
T ss_pred HHHHHHCCCcCCC--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHc
Confidence 4456666655554 89999999999999999998998888887643
No 267
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=21.02 E-value=1.8e+03 Score=28.14 Aligned_cols=137 Identities=15% Similarity=0.028 Sum_probs=69.7
Q ss_pred HHHHHHHHHhhhcccCccchHHHHHHHHHHhhcCCchhchHHHHHHHHHhhcCCCChhHHhhhhhcccCCCc-hhHhhhH
Q 000737 980 VQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS-IHIHQYA 1058 (1322)
Q Consensus 980 ~~~il~~l~~~l~s~~~~~Ri~a~aflsEll~~~~~~~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~-~~v~~~~ 1058 (1322)
.-..++.+-+++-+.+ .+|.++... +-=+....+ ..-.+.++..|.+.+..++...|..++-|||-.-. .+.
T Consensus 411 ~d~gl~~Ldkyly~de-~~~KaGaLL-Gig~s~~~v-~~E~~palalLs~yl~s~s~k~~~aaiLGlg~afsGt~~---- 483 (881)
T COG5110 411 SDKGLETLDKYLYADE-SYRKAGALL-GIGLSGLRV-FEERPPALALLSNYLQSSSSKHVIAAILGLGAAFSGTQA---- 483 (881)
T ss_pred hHhhHHHHHHHHhcCc-cccccccee-eeeeccccc-ccccchHHHHHHHhccCCchHHHHHHHhhhHHhhcCCcH----
Confidence 3446667777776443 444444211 110111111 01123466678888888899999999999995532 111
Q ss_pred hHHHHHHHhhcccCCh--HHHHHHHHHHHHHhccCCcccchhhH-HhHHHHhccccccCChhHHHHHHHH
Q 000737 1059 TQVLSVILALLDDLDE--SVQLTAVSCLLTILKSSSKDAVEPIL-LNLSVRLRNLQVSMNVKMRRNAFAA 1125 (1322)
Q Consensus 1059 ~~lL~all~~L~d~d~--~V~leam~~L~~ll~~l~~~~~~~~l-~~l~~~lrpffede~~~vR~aAi~l 1125 (1322)
..++.-+..-..+.|. +++.-|-.+|+.++-.--..++-+.. .+...| .-.+.+..-+|-.|..+
T Consensus 484 eevl~lL~Pi~~std~pie~~~~asltLg~vFvGtcngD~ts~ilqtf~Er--~~~e~~tqw~RFlaLgL 551 (881)
T COG5110 484 EEVLELLQPIMFSTDSPIEVVFFASLTLGSVFVGTCNGDLTSLILQTFVER--GKIESETQWFRFLALGL 551 (881)
T ss_pred HHHHHHhhhhhcCCCCcHHHHHHHHHhhhheEeeccCchHHHHHHHHHHHh--hhhhhhhHHHHHHHHHH
Confidence 2234444444445565 45555666677776544455554333 222222 11233344466655543
No 268
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=20.94 E-value=3.9e+02 Score=27.77 Aligned_cols=40 Identities=25% Similarity=0.409 Sum_probs=32.8
Q ss_pred HHHHHHHHhhcCCCChhHHhhhhhcccCCCchhHhhhHhH
Q 000737 1021 EQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQ 1060 (1322)
Q Consensus 1021 ~~~~~~L~~~l~D~~~~VR~lalrGLg~l~~~~v~~~~~~ 1060 (1322)
+.+-..+...+.++++.|+++||+.+...-.+.+.+|...
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k~~~l~pY~d~ 55 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWKDPYLTPYKDN 55 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHhHHHH
Confidence 3456677788999999999999999998877777778765
No 269
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=20.66 E-value=1.1e+02 Score=23.36 Aligned_cols=28 Identities=29% Similarity=0.275 Sum_probs=23.1
Q ss_pred HHHHHHhhcccCChHHHHHHHHHHHHHh
Q 000737 1061 VLSVILALLDDLDESVQLTAVSCLLTIL 1088 (1322)
Q Consensus 1061 lL~all~~L~d~d~~V~leam~~L~~ll 1088 (1322)
.++.++..|...+.+++..|..+|++|.
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5777888888778889999999998874
No 270
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.36 E-value=2.2e+03 Score=28.99 Aligned_cols=396 Identities=12% Similarity=0.143 Sum_probs=190.1
Q ss_pred hhhHhHHHHHHHHHHHhcCChhHHHHHHHHHHHh----cCcCCccchhhHHHHHHHHhhhcHH--------HHHHHHHHH
Q 000737 295 DDHSALLHRCLGILLQKVADRNYVCDKIDWMYKQ----ANIAIPTNRLGLAKAMGLVAASHLD--------AVLEMLKGI 362 (1322)
Q Consensus 295 ~~eK~fL~k~~G~~L~~~~~~~~V~~~L~~ll~~----~~~~~~~ereG~A~~~G~~A~~Hld--------~vL~~L~~~ 362 (1322)
..--+||+.-+|-.++..+..-.+-.|.+.++-. +.|-...+---+-.+||.+|+..+. ++...+...
T Consensus 457 d~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~ 536 (982)
T KOG2022|consen 457 DGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSL 536 (982)
T ss_pred HHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHHHHHHHHHHHH
Confidence 3445788888999999888444555566655432 3444455555688889999887654 333333222
Q ss_pred Hhhhcccchh--hhhh-hcccc-ccccchHhHHHHHHHHHHHHHhcCCchhHHHHHHHHhhhhhhhhhhh--cCchhHHH
Q 000737 363 LDNIGQSLFQ--RLLS-FFSNS-YRMEESDDIHAALALMYGYAAKYAPSTVIEARIDALVGTNMLSRLLH--VRHHTAKQ 436 (1322)
Q Consensus 363 ~~~~~~~~~~--~~l~-~~k~~-~~~~e~~~~ks~l~l~yg~va~~ap~~~il~~ve~~I~~~i~~~~~~--~kd~~~K~ 436 (1322)
..-.+...+. -.+. .|.-- ..+. ..-.+...-.++..|| +.+.+..|..+ . ...-+.. ....+...
T Consensus 537 s~~l~e~P~~ln~sl~~L~~~Lh~sk~-----s~q~i~tl~tlC~~C~-~~L~py~d~~~-a-~~~e~l~~~~~~~S~~~ 608 (982)
T KOG2022|consen 537 SNWLGEHPMYLNPSLPLLFQGLHNSKE-----SEQAISTLKTLCETCP-ESLDPYADQFS-A-VCYEVLNKSNAKDSDRL 608 (982)
T ss_pred HHHHhcCCcccCchHHHHHHHhcCchH-----HHHHHHHHHHHHHhhh-hhCchHHHHHH-H-HHHHHhcccccCchHHH
Confidence 2110001000 0000 11100 1111 1111223566677775 55677776532 2 2232222 23446677
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCcCCCCHHHHHHHHHHHhccCCCCCCCCchhhhhHHHHHHHHHhhcccccCCCCChhHH
Q 000737 437 AVITAIDLLGRAVINAAENGASFPLKKRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEPKLTIETR 516 (1322)
Q Consensus 437 s~l~si~~l~~av~~~~~~~~~f~f~~k~eLl~~l~~~i~~Ep~~~l~t~~~~l~~~r~~am~a~~~L~~l~P~L~~e~~ 516 (1322)
.+++||.-+.+.+.+. |..+++|.++. +.+ -| +.++ +.|-++ .+
T Consensus 609 klm~sIGyvls~~~pE-------------e~~kyl~~lin---------~il-----~q--le~~-----l~~~i~--~~ 652 (982)
T KOG2022|consen 609 KLMKSIGYVLSRLKPE-------------EIPKYLMKLIN---------PIL-----SQ--LEIN-----LAPGID--DQ 652 (982)
T ss_pred HHHHHHHHHHHhccHH-------------hHHHHHHHHHH---------HHH-----HH--HHHh-----hcCCCC--CH
Confidence 8888888877776542 34444444441 100 00 0000 111111 22
Q ss_pred HHHHHHhhhccccCCCCcccHHHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHhcChhHHHhhHHHHHHHHHH
Q 000737 517 NHVMKATLGFFALPNDPIDVVNPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEYQRRRSCLAVYEML 596 (1322)
Q Consensus 517 ~~ll~~c~~v~~lp~~~~~l~~~~~~aL~~lL~~ll~~~~~d~~~~~~~L~~il~~l~pwl~S~~~~eR~RA~~~~~~lL 596 (1322)
.+.+.+|+ .+..+..|.++++-+...+ .-..-.....||=+++-..-++|++..+-+++
T Consensus 653 e~~l~~~~---------------~l~~iS~LftSL~~~~~~~------d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~ 711 (982)
T KOG2022|consen 653 ENHLRIAF---------------QLNTISALFTSLINKKDII------DTDQPEQREEPFQQFPILQVLQKAIPVFEKVL 711 (982)
T ss_pred HHHHHHHH---------------HHHHHHHHHhccCCCCccc------cccchhhhccccccCCHHHHHHHHHHHHHHHH
Confidence 22222232 1122344455555444321 11222346678888888888899988888887
Q ss_pred HHHHhh--hhcccccCCCCCCccchhhhhhhhhccCCCCCCcccCCchhhhhhhhHHHHhhccccCCChhHHHHHHHHHH
Q 000737 597 LKFRTL--CVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRVIMYLPRCADTDSEVRKISAQILD 674 (1322)
Q Consensus 597 ~~f~~~--~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ps~f~~~~~~f~~lG~Lvg~l~prC~D~~~~ir~~A~~~i~ 674 (1322)
..+.+. -|.+.|..-.|+ .....+| |..| -.+.+=..++++.++|.=+-.++-..++-+=+
T Consensus 712 s~~~~~s~vve~~C~i~~~~--------------v~~~~~s-F~~p--~l~~l~~Fi~r~~~~~~a~tl~l~~~~l~~~~ 774 (982)
T KOG2022|consen 712 SMWLGLSDVVEASCIIMVKG--------------VRSLLTS-FPEP--MLPSLCPFIVRFLTSCLAVTLSLIAACLLAKS 774 (982)
T ss_pred HHHhcchhHHHHHHHHHHhc--------------ccccccc-chhh--hHHHHHHHHHHhccchHHHHHHHHHHHHHhhh
Confidence 766531 112233211222 1122233 3111 22456677888999997665544433222211
Q ss_pred HHHHHHhhCCCCCCCCCCc--chhhhhhhhhchHHHHHHhhcCC-CCChh--HHHH----HHHHHHhhcCCh--hHHHHH
Q 000737 675 QLFSISLSLPRPVGSSSGI--DLELSYGALSSLEDVIAILRSDA-SIDPS--EVFN----RIVSSVCILLTK--DELVAT 743 (1322)
Q Consensus 675 ~Ll~I~l~~~~~~~~~~~~--~~~~~~~~l~~~~~~i~~l~~~~-~~~~~--~~~~----~i~~~i~~~L~~--~el~~l 743 (1322)
+ .++..... +.. ..+.+ -+-...... .+++. ..|. ++.|.+-+.+.+ -..+.+
T Consensus 775 ----~------~~~~~~lv~~~~~---~~~q~---sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~ts~ 838 (982)
T KOG2022|consen 775 ----T------VEQCKPLVGQDMA---NAFQQ---SLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFTSL 838 (982)
T ss_pred ----c------cccccccHHHHHH---HHHHH---HHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccchHHHHHH
Confidence 0 01111000 111 11111 001111111 12221 1122 233333333333 456778
Q ss_pred HH-HHHHhccCCChhhHHHHHHHHHHHHhhccCccccccHHHHHHHH
Q 000737 744 LH-SCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSL 789 (1322)
Q Consensus 744 i~-~ll~~L~d~~~~~~~~A~~~L~~~l~~~g~~L~e~~V~eI~~~i 789 (1322)
+. ..+.+|+.|.+.-..+|++.+..++...+...-.+ |.+.|..+
T Consensus 839 i~~~a~~ll~~pE~~~i~aa~qF~t~~~~~~~s~~~~t-v~~~V~~~ 884 (982)
T KOG2022|consen 839 ILICAFILLNSPEPTTIRAASQFLTALATYATSHDLVT-VTSVVAEI 884 (982)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHhhcccchhHH-HHHHHHhc
Confidence 88 88999999999999999999999987776644244 55544433
No 271
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=20.33 E-value=1.9e+02 Score=29.50 Aligned_cols=66 Identities=26% Similarity=0.362 Sum_probs=49.7
Q ss_pred hhhhhhcccccchhhHHHHHHhhhcCCChhhhh---cchHHHHHHHHHhhhc-ccHH-HHHHHHHHHHHHhh
Q 000737 2 FLLNKCRLKEEHLSVGALYVLKHLLPRSSEAWH---SKRPLLLEAVKSLLDE-QNLA-VQKAISELIVVMAS 68 (1322)
Q Consensus 2 fll~~l~~~~E~~Rvg~L~vlrhlins~~~~~~---~k~~~i~~~~k~~l~d-~~~k-Vr~a~~~~I~ama~ 68 (1322)
.|..||.++|...-.-||.+|-.++..+++.+. ..+.++ ..++.++.+ ++.. ||+.++++|...+.
T Consensus 41 ~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl-~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 41 LLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFL-NELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHH-HHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999998887654 234444 455555533 3334 99999999988775
No 272
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.22 E-value=97 Score=34.15 Aligned_cols=56 Identities=21% Similarity=0.173 Sum_probs=39.9
Q ss_pred hhHhhhHhHHHHHHHhhcccCChHHHHHHHHHHHHHhccCC--cccchhhHHhHHHHh
Q 000737 1052 IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSS--KDAVEPILLNLSVRL 1107 (1322)
Q Consensus 1052 ~~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~ll~~l~--~~~~~~~l~~l~~~l 1107 (1322)
+|+-..-|+++..+-++|...|.+|+..++.+|..+.-..+ ...+.||.-+|..-+
T Consensus 147 ~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aLVPfYRQlLp~~ 204 (262)
T KOG3961|consen 147 EKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAALVPFYRQLLPVL 204 (262)
T ss_pred cccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhhhhHHHHhhhhh
Confidence 44444567888888888888899999999999999876543 334556665554433
No 273
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=20.02 E-value=1e+03 Score=28.39 Aligned_cols=75 Identities=12% Similarity=0.106 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHhccCCcccchhhHHhHHHHhcccc----------ccCChhHHHHHHHHHHHHhhccCCcchHhHHHH
Q 000737 1075 SVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQ----------VSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQ 1144 (1322)
Q Consensus 1075 ~V~leam~~L~~ll~~l~~~~~~~~l~~l~~~lrpff----------ede~~~vR~aAi~lfG~L~~~~~~~~~~~~~eq 1144 (1322)
......|..+..++..- .-.+.+|+.++..-+..+. .++...+|..|..+.+.+++.- +.....++..
T Consensus 232 ~~L~~lm~~v~ALl~N~-~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f-~~~y~~l~~r 309 (343)
T cd08050 232 ALLIYLMRMVRALLDNP-NLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKF-STSYNTLQPR 309 (343)
T ss_pred HHHHHHHHHHHHHhcCC-CCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHc-CCCCCcHHHH
Confidence 34444555555555442 2245566666555543332 4566899999999999999732 2333445556
Q ss_pred HHHhHHH
Q 000737 1145 IHAMLPR 1151 (1322)
Q Consensus 1145 v~~~Lvp 1151 (1322)
|.+.+.-
T Consensus 310 i~~tl~k 316 (343)
T cd08050 310 ITRTLLK 316 (343)
T ss_pred HHHHHHH
Confidence 6554433
Done!