Query 000737
Match_columns 1322
No_of_seqs 254 out of 411
Neff 7.1
Searched_HMMs 29240
Date Tue Mar 26 17:35:38 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000737.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_506-510//hhsearch_pdb/000737hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fdd_A Transportin-1; heat rep 1.0 1 1 156.8 45.9 595 389-1177 105-743 (852)
2 4fdd_A Transportin-1; heat rep 1.0 1 1 155.2 49.2 175 997-1175 601-783 (852)
3 1u6g_C TIP120 protein, CAND1; 1.0 1 1 153.8 40.8 979 3-1176 11-1035(1230)
4 1b3u_A Protein (protein phosph 1.0 1 1 149.1 42.9 291 984-1292 283-586 (588)
5 2bpt_A Importin beta-1 subunit 1.0 1 1 148.0 42.1 262 999-1293 573-857 (861)
6 1u6g_C TIP120 protein, CAND1; 1.0 1 1 140.6 74.3 883 225-1299 127-1100(1230)
7 1qgr_A Protein (importin beta 1.0 1 1 139.4 47.1 249 1021-1295 605-873 (876)
8 1b3u_A Protein (protein phosph 1.0 1 1 138.8 28.8 182 985-1176 366-548 (588)
9 2bpt_A Importin beta-1 subunit 1.0 1 1 136.9 57.5 421 646-1178 408-859 (861)
10 1qgr_A Protein (importin beta 1.0 1 1 131.6 49.0 195 978-1175 645-870 (876)
No 1
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=156.83 Aligned_cols=595 Identities=12% Similarity=0.096 Sum_probs=260.5
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 69999999899998309924689999887544556543103754689999999999999975322169976887879999
Q 000737 389 DIHAALALMYGYAAKYAPSTVIEARIDALVGTNMLSRLLHVRHHTAKQAVITAIDLLGRAVINAAENGASFPLKKRDQLL 468 (1322)
Q Consensus 389 ~~ks~l~l~yG~va~~ap~~~il~~ve~~I~~~i~~~~~~~kd~~~K~s~l~si~~i~~ai~~~~~~~~~f~f~~k~eLl 468 (1322)
.++..+..+.+.++.+.++..-- +++..+... ....+...+...+.++..+++........ ......-..++
T Consensus 105 ~vr~~~a~~i~~ia~~~~~~~wp-----~ll~~L~~~-l~~~~~~~r~~al~~L~~i~~~~~~~~~~--~~~~~~~~~il 176 (852)
T 4fdd_A 105 LIRATVGILITTIASKGELQNWP-----DLLPKLCSL-LDSEDYNTCEGAFGALQKICEDSAEILDS--DVLDRPLNIMI 176 (852)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTCT-----THHHHHHHH-HSCSSHHHHHHHHHHHHHHHHHHTTHHHH--CSSSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHCH--HHHCCHHHHHH
T ss_conf 99999999999999864813568-----999999998-70999899999999999999985787563--43133299999
Q ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99998724688987778234556799999987200134577779367989988736332268999010899999999999
Q 000737 469 DYILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEPKLTIETRNHVMKATLGFFALPNDPIDVVNPLIDNLITLL 548 (1322)
Q Consensus 469 ~~l~~~i~~Ep~~~l~t~~~~l~~~r~~al~a~~~L~~l~P~l~~e~~~~ll~~~~~~~~lp~~~~~l~~~~~~aL~~lL 548 (1322)
..+...++.+ ++ .+|..|+.++..+++..| +..
T Consensus 177 ~~l~~~l~~~------~~-----~vR~~A~~aL~~~~~~~~----------------------------~~~-------- 209 (852)
T 4fdd_A 177 PKFLQFFKHS------SP-----KIRSHAVACVNQFIISRT----------------------------QAL-------- 209 (852)
T ss_dssp HHHTTTTTCS------SH-----HHHHHHHHHHHTTTTTTC----------------------------HHH--------
T ss_pred HHHHHHHCCC------CH-----HHHHHHHHHHHHHHHCCC----------------------------HHH--------
T ss_conf 9999985679------78-----999999999999986463----------------------------879--------
Q ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHC
Q ss_conf 99970158887774999999999777873092488765799999999999984221034457888876512445442103
Q 000737 549 CAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLG 628 (1322)
Q Consensus 549 ~~ll~~~~~d~~~~~~~L~~il~~l~pwl~S~~~hER~RA~~~~~~lL~~f~~~~~~~~c~~~~~~~~~~~~~~~~~~~~ 628 (1322)
...+..+++.+...++++...-|..|+.+...+...+.+ . +.
T Consensus 210 --------------~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~----------------~---~~----- 251 (852)
T 4fdd_A 210 --------------MLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMD----------------R---LL----- 251 (852)
T ss_dssp --------------HTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHH----------------H---HG-----
T ss_pred --------------HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHH----------------H---HH-----
T ss_conf --------------988999999999871799778999999999999985779----------------8---99-----
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCHH-HHHHHHHCHH
Q ss_conf 5778997656771122234568898524656899369999999999999988309888-8898886123-3255421018
Q 000737 629 NFSNLPSAYVLPSREALCLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRP-VGSSSGIDLE-LSYGALSSLE 706 (1322)
Q Consensus 629 ~~~~~ps~f~~~~~~~~~lG~Lvg~l~prC~D~~~~ir~~A~~~i~~Ll~I~l~~~~~-~~~~~~~~~~-~~~~~l~~~~ 706 (1322)
+.+..++..+.-...|++..||..|.+.+..+-.-.... +. .+... ... .....+...+
T Consensus 252 ----------------~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~-~~~~~~~~--~l~p~ll~~l~~~e 312 (852)
T 4fdd_A 252 ----------------PHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICK-DVLVRHLP--KLIPVLVNGMKYSD 312 (852)
T ss_dssp ----------------GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHH-HHHTTTHH--HHHHHHHHHTSCCH
T ss_pred ----------------HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHH-HHHHHHHH--HHHHHHHHHCCCCH
T ss_conf ----------------889999999998706996899999999999986036579-88788898--89999998757867
Q ss_pred HHHHHHHCC-----------CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999985059-----------999916999999999950089127999999999831689900288999999999851047
Q 000737 707 DVIAILRSD-----------ASIDPSEVFNRIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGN 775 (1322)
Q Consensus 707 ~~i~~l~~~-----------~~~~~~~~~~~i~~~i~~~L~~~el~~li~~lle~L~d~~~~~~~~A~~~L~~il~~rG~ 775 (1322)
+.+..+..+ ...............++..++..-+..++..+.+.+.+++...+.+|...+..+.+..+.
T Consensus 313 ~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~ 392 (852)
T 4fdd_A 313 IDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ 392 (852)
T ss_dssp HHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHH
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHH
T ss_conf 67998669844322245640111699999999999987461878999999999985599889999999999999863568
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCHHHHHHHHCCCCCCHHHHHCCC
Q ss_conf 66644287899999987411271999999999999987304997662046651058301446762208974001100377
Q 000737 776 ELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHGDM 855 (1322)
Q Consensus 776 ~L~e~~V~~I~~~i~~~L~~i~~~~~r~~~l~aI~~La~~h~~~lp~d~w~al~~~~~~~~~l~~l~~~~~~~~~~~~~~ 855 (1322)
.+... ++.++..+...+.+. .+.+|..+..+++.++...... +. .......+.. +.+.+ +
T Consensus 393 ~~~~~-l~~~l~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~-~~--------~~~~~~ll~~------L~~~L-~-- 452 (852)
T 4fdd_A 393 GMIPY-LPELIPHLIQCLSDK-KALVRSITCWTLSRYAHWVVSQ-PP--------DTYLKPLMTE------LLKRI-L-- 452 (852)
T ss_dssp HHGGG-HHHHHHHHHHHTTCS-SHHHHHHHHHHHHHTHHHHHHS-CT--------TTTHHHHHHH------HHHHH-T--
T ss_pred HHHHH-HHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHCCC-HH--------HHHHHHHHHH------HHHHH-H--
T ss_conf 89987-999999999871799-8899999999999999886110-47--------8999999999------99998-5--
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 77887888988762104799999999998803882107889986399999999986333157989998827999999999
Q 000737 856 EKGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEPLRAILTSFQA 935 (1322)
Q Consensus 856 ~~~~~~~~~~~~~~~~~~~laa~~aL~Ell~~~~~~~~~~v~~~fp~Ll~aLL~ql~~~~~l~~~~~~~P~~~al~Alk~ 935 (1322)
. ..+ ..-.+|..||..+....+ ..+..++|+++-.|+.-+.... ..-...+++|+..
T Consensus 453 -d-------~~~----~vr~~a~~aL~~l~~~~~----~~l~~~l~~ll~~L~~~l~~~~-------~~~~~~~~~ai~~ 509 (852)
T 4fdd_A 453 -D-------SNK----RVQEAACSAFATLEEEAC----TELVPYLAYILDTLVFAFSKYQ-------HKNLLILYDAIGT 509 (852)
T ss_dssp -C-------SSH----HHHHHHHHHHHHHHHHHG----GGGGGGHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHH
T ss_pred -C-------CCH----HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHHHH
T ss_conf -8-------988----899999999999999736----7667679999999999998837-------4799999999999
Q ss_pred HHHHHCCHH----HH-HHHH-------HCCC-CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 999827378----99-9997-------4399-886242798699999888510972289999999863206674523899
Q 000737 936 FCECVGDLE----MR-KILA-------RDGE-QNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAA 1002 (1322)
Q Consensus 936 ll~~~g~~~----v~-~~Le-------~~~~-w~~~~~~~~gV~lLar~l~~~~~~~i~~il~~l~~~l~s~~~~~Ri~a 1002 (1322)
+....|..- .. ..|. .-.+ -.+.....+.+..++.++-..-.|.+++++.
T Consensus 510 l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~~~~~~l~~i~~~~g~~~~~~~~~i~~----------------- 572 (852)
T 4fdd_A 510 LADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQ----------------- 572 (852)
T ss_dssp HHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHGGGGHHHHHHHHH-----------------
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
T ss_conf 999742431367899998899999987333046999999999999999974867988999999-----------------
Q ss_pred HHHHHHHHHCCCCHHCHHHHHHHHHHH-------------HCCCCCHHHHHHHHHCCCCCCC---HHHHHHH--HHHHHH
Q ss_conf 999999720687411059999999974-------------1079992478564200258884---2576668--679999
Q 000737 1003 AAALSEFVRYSGGFDSLLEQMVEALCR-------------HVSDESPTVRGLCLRGLVQIPS---IHIHQYA--TQVLSV 1064 (1322)
Q Consensus 1003 ~aflsEll~~~~~~~~ll~~~~~~L~~-------------~l~D~~~~VR~lalrGLg~la~---~~v~~~~--~~lL~a 1064 (1322)
.++..+.. ....++..+|..++..+|.++. .+...|. +.+++.
T Consensus 573 -------------------~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~ 633 (852)
T 4fdd_A 573 -------------------RCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTL 633 (852)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHH
T ss_pred -------------------HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf -------------------9999999999999875338866688761199999999978999874769988367718999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 99310368858999999999998623994651142786798732536569956899999999997510588605769999
Q 000737 1065 ILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQ 1144 (1322)
Q Consensus 1065 ll~~L~d~d~~V~leam~~L~~il~~l~~~~~~~~~~~i~~~lr~lf~de~~~vR~aAi~lfG~L~~~~~~~~~~~~~~q 1144 (1322)
++..+.|.+.+|+..+...++.+....+ ..+.+++..+...+...+++++..+|..|+.++|.++... +....+|.+.
T Consensus 634 l~~~l~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~-~~~~~p~~~~ 711 (852)
T 4fdd_A 634 MYQCMQDKMPEVRQSSFALLGDLTKACF-QHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQM-GIEMQPYIPM 711 (852)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHCG-GGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHH-GGGGGGGTHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_conf 9998389984499999999999999816-8889879999999998769420689999999999999971-1767878999
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCH
Q ss_conf 998677898732689966999999999961101
Q 000737 1145 IHAMLPRLILHIYDDDLSVRQACRNTLKQVAPF 1177 (1322)
Q Consensus 1145 v~~~LvpLllHL~D~~~~V~~ack~tL~~~a~~ 1177 (1322)
++..|++++-+ .+....|+..+..|+++++..
T Consensus 712 il~~L~~~l~~-~~~~~~~~~~a~~~igrl~~~ 743 (852)
T 4fdd_A 712 VLHQLVEIINR-PNTPKTLLENTAITIGRLGYV 743 (852)
T ss_dssp HHHHHHHHHTC-SSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999998579-988720778899999999986
No 2
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=155.18 Aligned_cols=175 Identities=15% Similarity=0.127 Sum_probs=119.7
Q ss_pred CCHHHHHHHHHHHHHCCCC-HHCHH--HHHHHHHHHHCCCCCHHHHHHHHHCCCCCCC---HHHHHHHHHHHHHHHHHCC
Q ss_conf 5238999999997206874-11059--9999999741079992478564200258884---2576668679999993103
Q 000737 997 FQREAAAAALSEFVRYSGG-FDSLL--EQMVEALCRHVSDESPTVRGLCLRGLVQIPS---IHIHQYATQVLSVILALLD 1070 (1322)
Q Consensus 997 ~~Ri~a~aflsEll~~~~~-~~~ll--~~~~~~L~~~l~D~~~~VR~lalrGLg~la~---~~v~~~~~~lL~all~~L~ 1070 (1322)
.-|.+++-.++.+....+. ....+ ..+++.+..+++|+++.||.-+..-+|.++. .++..|.+.+++.+++.|+
T Consensus 601 ~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~ 680 (852)
T 4fdd_A 601 DFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLN 680 (852)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 19999999997899987476998836771899999983899844999999999999998168889879999999998769
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCC--CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 68858999999999998623994651142786798732536569--9568999999999975105886057699999986
Q 000737 1071 DLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSM--NVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAM 1148 (1322)
Q Consensus 1071 d~d~~V~leam~~L~~il~~l~~~~~~~~~~~i~~~lr~lf~de--~~~vR~aAi~lfG~L~~~~~~~~~~~~~~qv~~~ 1148 (1322)
+.+..+...|+.+++.+....+. .+.+|...+..++-+.+++. +..++..|+.++|.++..+ .....|+..|+...
T Consensus 681 ~~~~~v~~~a~~alg~i~~~~~~-~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~-~~~~~~~l~~~~~~ 758 (852)
T 4fdd_A 681 PEFISVCNNATWAIGEISIQMGI-EMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVC-PQEVAPMLQQFIRP 758 (852)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHGG-GGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHC-HHHHGGGHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHC-HHHHCCCHHHHHHH
T ss_conf 42068999999999999997117-67878999999999985799887207788999999999868-89767558999999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHC
Q ss_conf 778987326899669999999999611
Q 000737 1149 LPRLILHIYDDDLSVRQACRNTLKQVA 1175 (1322)
Q Consensus 1149 LvpLllHL~D~~~~V~~ack~tL~~~a 1175 (1322)
+..-+-+..|. +.+..+-.+|+.+.
T Consensus 759 ~~~~l~~~~d~--~e~~~a~~~l~~li 783 (852)
T 4fdd_A 759 WCTSLRNIRDN--EEKDSAFRGICTMI 783 (852)
T ss_dssp HHHHHHTSCSS--HHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCC--HHHHHHHHHHHHHH
T ss_conf 99986536660--79999999999999
No 3
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=153.76 Aligned_cols=979 Identities=14% Similarity=0.121 Sum_probs=452.7
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHH-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEE
Q ss_conf 22030254421046798997653079903320-53689999997752001289999999999998611531177665224
Q 000737 3 LLNKCRLKEEHLSVGALYVLKHLLPRSSEAWH-SKRPLLLEAVKSLLDEQNLAVQKAISELIVVMASHCYLIGPSGELFV 81 (1322)
Q Consensus 3 ll~~l~~~~E~~Rvg~L~ilrhlins~~~~~~-~k~~~i~~~~k~~l~d~~~kVr~a~~~~I~ama~~~yl~~~~g~~~i 81 (1322)
++.++.+.+...|..++.-|...++.....+. .....++..+-..+.|++.+||.+-+..+..++.+.. ...+
T Consensus 11 lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~------~~~~ 84 (1230)
T 1u6g_C 11 LLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVK------EYQV 84 (1230)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSC------HHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC------HHHH
T ss_conf 9975589878599999999999974166578756799999999998669998999999999999997587------9899
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHH----------HHHHHHHHHHHCCCCCCCCC
Q ss_conf 46620222368522123443334678891579999887788983030022----------36058987721067477320
Q 000737 82 EYLVRHCALSDQKKYVNESSKVKIGAFCPTELRAICEKGLLLLTITIPEM----------QHILWPLLLKMIIPRAYTSA 151 (1322)
Q Consensus 82 ~fiv~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~L~lltttv~~m----------~~~LWP~LL~~i~~~~yt~a 151 (1322)
++++..+.-. . . + ....+|..+.++|.-+....+.. ...+-|.|+..+-..+-...
T Consensus 85 ~~i~~~Ll~~---l----~---d----~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~ 150 (1230)
T 1u6g_C 85 ETIVDTLCTN---M----L---S----DKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSV 150 (1230)
T ss_dssp HHHHHHHHHH---T----T---C----SSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHH
T ss_pred HHHHHHHHHH---H----C---C----CCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 9999999998---6----6---9----83889999999999999967974444411788999999999998757884679
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 33488999999974125898654444577899986999999999825964430459999999987088898401443786
Q 000737 152 AATVCRCISELCRHRSSSSNVMLSECKARDDIPNPEELFARLVVLLHDPLAREQQATQILMVLYYLSPLFPTNIDLFWQD 231 (1322)
Q Consensus 152 l~~i~k~l~~La~k~~~~~~~~~~~~~~~~~lPsp~~llaRllvl~~~P~~~~~rg~~~L~lL~~l~~~i~~~l~~~W~~ 231 (1322)
-...+.++..++... +... .|.-..++..++-.+.+|... --.+++..+..+........ ...
T Consensus 151 ~~~al~~l~~~~~~~---~~~l---------~~~~~~ll~~l~~~L~~~~~~--vR~~a~~al~~l~~~~~~~~---~~~ 213 (1230)
T 1u6g_C 151 QLEALDIMADMLSRQ---GGLL---------VNFHPSILTCLLPQLTSPRLA--VRKRTIIALGHLVMSCGNIV---FVD 213 (1230)
T ss_dssp HHHHHHHHHHHHHHT---CSSC---------TTTHHHHHHHHGGGGGCSSHH--HHHHHHHHHHHHTTTC-------CTT
T ss_pred HHHHHHHHHHHHHHH---HHHH---------HHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHHHHHCCHHH---HHH
T ss_conf 999999999999982---7677---------887999999999987599689--99999999999998568999---999
Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 28888710036777789940474299999999997231005570899999999843201899936676999999999881
Q 000737 232 EIPKMKAYVSDTEDLKLDPSYQETWDDMIINFLAESLDVVQETDWLISLGNAFTEQYVLYTPDDDHSALLHRCLGILLQK 311 (1322)
Q Consensus 232 ~Ip~L~~~L~~~~~~~~~~~~~~~We~~Ll~fL~~sl~~i~d~~W~~~L~~~l~~q~~~y~~~~~eK~fL~k~~G~~L~~ 311 (1322)
.+|.|+++|...++ ......--+.+-.+....=+.+. .+...+...+.+.+. .+++.-+..-+.++|.....
T Consensus 214 ~l~~l~~~L~~~~~----~~~r~~a~~~l~~l~~~~~~~~~--~~l~~l~~~ll~~l~--d~~~~vR~~a~~~l~~l~~~ 285 (1230)
T 1u6g_C 214 LIEHLLSELSKNDS----MSTTRTYIQCIAAISRQAGHRIG--EYLEKIIPLVVKFCN--VDDDELREYCIQAFESFVRR 285 (1230)
T ss_dssp HHHHHHHHHHHTCS----SCSCTTHHHHHHHHHHHSSGGGT--TSCTTHHHHHHHHHS--SCCTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCCC----HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHH
T ss_conf 99999998616775----56899999999999998689899--889999999999866--89778999999999999997
Q ss_pred CCCH--HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHH-HHHHCCCCHHHHHHHCCCCCCCCCHH
Q ss_conf 1795--58999999998831868851014699999999620689999999998-85100110012221014653331147
Q 000737 312 VADR--NYVCDKIDWMYKQANIAIPTNRLGLAKAMGLVAASHLDAVLEMLKGI-LDNIGQSLFQRLLSFFSNSYRMEESD 388 (1322)
Q Consensus 312 ~~~~--~~V~~~L~~ll~~~~~~~~~ereG~A~~~G~~A~~Hld~vL~~L~~~-~~~~~~~~~~~~l~~~k~~~~~~e~~ 388 (1322)
+... .++..-+..++....+.... ...-. +......++. .... ..... ..+.+. +....
T Consensus 286 ~~~~~~~~l~~li~~ll~~l~~d~~~-------~~~~d-----~~~~~~~~~~~~~~~-~~~~~---~~~~~~--~d~~~ 347 (1230)
T 1u6g_C 286 CPKEVYPHVSTIINICLKYLTYDPNY-------NYDDE-----DEDENAMDADGGDDD-DQGSD---DEYSDD--DDMSW 347 (1230)
T ss_dssp TTCCCHHHHHHHHHHHTTCCCCC------------------------------------------------------CTT
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCC-------CCCCC-----CCCCCCCCCCCCCCC-HHHCC---CCCCCC--CCCCH
T ss_conf 84877776899999999982789988-------87644-----110112233446530-11001---366645--55677
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCC----
Q ss_conf 699999998999983099246899998875445565431037546899999999999999753221-699768878----
Q 000737 389 DIHAALALMYGYAAKYAPSTVIEARIDALVGTNMLSRLLHVRHHTAKQAVITAIDLLGRAVINAAE-NGASFPLKK---- 463 (1322)
Q Consensus 389 ~~ks~l~l~yG~va~~ap~~~il~~ve~~I~~~i~~~~~~~kd~~~K~s~l~si~~i~~ai~~~~~-~~~~f~f~~---- 463 (1322)
.+|.+.+.+.+.++...| +.+.+.++. ++..+..++ ...+..++.+.++++..+.+++....+ .+....+++
T Consensus 348 ~vR~~A~~~l~~l~~~~~-~~~~~~~~~-l~~~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 424 (1230)
T 1u6g_C 348 KVRRAAAKCLDAVVSTRH-EMLPEFYKT-VSPALISRF-KEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETP 424 (1230)
T ss_dssp HHHHHHHHHHHHHHTTCC-TTHHHHHTT-THHHHHSTT-SCSSSHHHHHHHHHHHHHHHHHCCC------------CCCH
T ss_pred HHHHHHHHHHHHHHHHCH-HHHHHHHHH-HHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCH
T ss_conf 999999999999997466-679999999-989999871-79865799999999999999724243434675201356455
Q ss_pred -------HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf -------7999999998724688987778234556799999987200134577779367989988736332268999010
Q 000737 464 -------RDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEPKLTIETRNHVMKATLGFFALPNDPIDV 536 (1322)
Q Consensus 464 -------k~eLl~~l~~~i~~Ep~~~l~t~~~~l~~~r~~al~a~~~L~~l~P~l~~e~~~~ll~~~~~~~~lp~~~~~l 536 (1322)
-++++..+...++.+. + ++|+.++.++..++..-|..-...-..++..++..+.-+......
T Consensus 425 ~~~~~~~l~~ll~~l~~~l~~~~------~-----~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v 493 (1230)
T 1u6g_C 425 LTMLQSQVPNIVKALHKQMKEKS------V-----KTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNL 493 (1230)
T ss_dssp HHHHHHHTTHHHHHHHHHTTCSC------H-----HHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCC------H-----HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 99999874699999999861377------8-----799999999999999761105777999999999997487885168
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 89999999999999970158887774999999999777873092488765799999999999984221034457888876
Q 000737 537 VNPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSC 616 (1322)
Q Consensus 537 ~~~~~~aL~~lL~~ll~~~~~d~~~~~~~L~~il~~l~pwl~S~~~hER~RA~~~~~~lL~~f~~~~~~~~c~~~~~~~~ 616 (1322)
...+..++..+ +..... ......+..+++.+..++......-|..|+.++..+.+.+..
T Consensus 494 ~~~a~~~l~~~----~~~~~~--~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~--------------- 552 (1230)
T 1u6g_C 494 KIDALSCLYVI----LCNHSP--QVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRP--------------- 552 (1230)
T ss_dssp HHHHHHHHHHH----HHSSCG--GGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCC---------------
T ss_pred HHHHHHHHHHH----HHHCCH--HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC---------------
T ss_conf 99999999999----983898--878867999999999997142468999999999999987167---------------
Q ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC--CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 512445442103577899765677112223456889852465--689936999999999999998830988888988861
Q 000737 617 THIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRVIMYLPRC--ADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGID 694 (1322)
Q Consensus 617 ~~~~~~~~~~~~~~~~~ps~f~~~~~~~~~lG~Lvg~l~prC--~D~~~~ir~~A~~~i~~Ll~I~l~~~~~~~~~~~~~ 694 (1322)
. ....+..| .+-+..++..+...+ .|++.++|..|+.|+..+..- . |......
T Consensus 553 -~-----------~~~~~~~~------~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~-~------g~~~~~~ 607 (1230)
T 1u6g_C 553 -L-----------DQPSSFDA------TPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICN-L------GDNLGSD 607 (1230)
T ss_dssp -S-----------SSCCCCCC------HHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHH-T------GGGCCTH
T ss_pred -C-----------CCCCCCCH------HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH-H------CCHHHHH
T ss_conf -5-----------55653232------78999999999998732699889999999999999998-2------7032443
Q ss_pred HHHHHHHHHCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 233255421018999985059999916999999999950089----1279999999998316899002889999999998
Q 000737 695 LELSYGALSSLEDVIAILRSDASIDPSEVFNRIVSSVCILLT----KDELVATLHSCTTAICDRTKQSAEGAIQAVVEFV 770 (1322)
Q Consensus 695 ~~~~~~~l~~~~~~i~~l~~~~~~~~~~~~~~i~~~i~~~L~----~~el~~li~~lle~L~d~~~~~~~~A~~~L~~il 770 (1322)
.. ..+..+. +.+.. ........+....++.... ..-+.+++..+...+.+.+...+..|+..+..++
T Consensus 608 ~~---~~l~~L~---~~l~~---e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~ 678 (1230)
T 1u6g_C 608 LP---NTLQIFL---ERLKN---EITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILI 678 (1230)
T ss_dssp HH---HHHHHHH---HHTTS---SSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHH
T ss_pred HH---HHHHHHH---HHHCC---CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 88---9999999---88445---305999999999998185644368889999999999998678889999999999999
Q ss_pred HHCCCCCCCCCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCHHHHHHHHCCCCCCH
Q ss_conf 5104766644287899999987411--27199999999999998730499766204665105830144676220897400
Q 000737 771 TKRGNELSETDVSRTTQSLLSAAVH--ITDKHLRLETLGAISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQ 848 (1322)
Q Consensus 771 ~~rG~~L~e~~V~~I~~~i~~~L~~--i~~~~~r~~~l~aI~~La~~h~~~lp~d~w~al~~~~~~~~~l~~l~~~~~~~ 848 (1322)
+..|..+. ...+...+..-++. ..+.+.+..++.++..+.......+ ..+ .+..+...+..+.. +
T Consensus 679 ~~~~~~~~---~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~--~~~----~~~~l~~~~~~l~~--~-- 745 (1230)
T 1u6g_C 679 KNYSDSLT---AAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSL--SKI----SGSILNELIGLVRS--P-- 745 (1230)
T ss_dssp HHCCTTCC---HHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGG--GGT----TTTTHHHHHHHHTC--T--
T ss_pred HCCCCCCC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHH--HHH----HHHHHHHHHHHHCC--C--
T ss_conf 60433389---89999999998763575418789999999999988491267--776----77689999999758--6--
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH-H-
Q ss_conf 11003777788788898876210479999999999880388210788998639999999998633315798999882-7-
Q 000737 849 DAFHGDMEKGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEP-L- 926 (1322)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~laa~~aL~Ell~~~~~~~~~~v~~~fp~Ll~aLL~ql~~~~~l~~~~~~~P-~- 926 (1322)
... ...+.+...+...+...+.. ...|+.++-.++..+.. ...+.... .
T Consensus 746 ----------------~~~----~~~~~~l~~~~~~l~~~~~~-----~~~~~~ll~~l~~~~~~----~~~~~~~~~~~ 796 (1230)
T 1u6g_C 746 ----------------LLQ----GGALSAMLDFFQALVVTGTN-----NLGYMDLLRMLTGPVYS----QSTALTHKQSY 796 (1230)
T ss_dssp ----------------TCC----HHHHHHHHHHHHHHHTTCCT-----TCSHHHHHHHHSTTTTT----C----CCHHHH
T ss_pred ----------------CCC----HHHHHHHHHHHHHHHHCCCC-----CCCHHHHHHHHHCCCCC----CCCCCCCCHHH
T ss_conf ----------------210----57899999999999834788-----78899999998500357----88732000104
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHC-CCCCC---HHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 99999999999982737899999743-99886---242798699999888510--9722899999998632066745238
Q 000737 927 RAILTSFQAFCECVGDLEMRKILARD-GEQND---KEKWINLIGDVAGCVSIK--RPKEVQTICLILTKSINRQQRFQRE 1000 (1322)
Q Consensus 927 ~~al~Alk~ll~~~g~~~v~~~Le~~-~~w~~---~~~~~~gV~lLar~l~~~--~~~~i~~il~~l~~~l~s~~~~~Ri 1000 (1322)
..+-.++-.++...|... ...++.- ..-.+ .+.-.........-+..+ ..+ .+.+...+.+.++++.+.-|.
T Consensus 797 ~~~a~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~-~~~l~~~~~~~l~~~~~~Vr~ 874 (1230)
T 1u6g_C 797 YSIAKCVAALTRACPKEG-PAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSG-QLELKSVILEAFSSPSEEVKS 874 (1230)
T ss_dssp HHHHHHHHHHHHHSCCCS-HHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHSCCCS-CTHHHHHHHHGGGCSCHHHHH
T ss_pred HHHHHHHHHHHHHCCHHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCC-CCCHHHHHHHHHCCCCHHHHH
T ss_conf 899999999998465666-899999999837887667999999999998615678765-641899999984799778999
Q ss_pred HHHHHHHHHHHCCCCHHCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCC----CHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 99999999720687411059999999974107999247856420025888----42576668679999993103688589
Q 000737 1001 AAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIP----SIHIHQYATQVLSVILALLDDLDESV 1076 (1322)
Q Consensus 1001 ~a~aflsEll~~~~~~~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~la----~~~v~~~~~~lL~all~~L~d~d~~V 1076 (1322)
+|...++.+.... ++..++.+.+.+.+. +.+|...+++|..+. .+....+.+++++.++..+.+.++.+
T Consensus 875 aAa~aLg~l~~~~------~~~~lp~ll~~l~~~-~~~~~~~l~al~e~i~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~ 947 (1230)
T 1u6g_C 875 AASYALGSISVGN------LPEYLPFVLQEITSQ-PKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGT 947 (1230)
T ss_dssp HHHHHHHHHHHHT------HHHHHHHHHHHHHSC-GGGHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSSTTH
T ss_pred HHHHHHHHHHCCC------HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 9999968775269------998899999987266-032498899999998238766677669999999998733830446
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999998623994651142786798732536569956899999999997510588605769999998677898732
Q 000737 1077 QLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHI 1156 (1322)
Q Consensus 1077 ~leam~~L~~il~~l~~~~~~~~~~~i~~~lr~lf~de~~~vR~aAi~lfG~L~~~~~~~~~~~~~~qv~~~LvpLllHL 1156 (1322)
...+..+|+++..... . .+...+...+.+.+..+|..++.+++.+..... . .+...+-..+.+++.++
T Consensus 948 r~~~a~~lg~l~~~~~----~----~l~p~l~~~l~~~~~~~R~~~~~~l~~~~~~~~-~---~~~~~l~~~~~~ll~~l 1015 (1230)
T 1u6g_C 948 RNVVAECLGKLTLIDP----E----TLLPRLKGYLISGSSYARSSVVTAVKFTISDHP-Q---PIDPLLKNCIGDFLKTL 1015 (1230)
T ss_dssp HHHHHHHHHHHHHSSG----G----GTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSC-C---THHHHHHHHSTTTHHHH
T ss_pred HHHHHHHHHHHHCCCH----H----HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC-H---HHHHHHHHHHHHHHHHC
T ss_conf 8999988756650676----8----888999998569978899999999999970682-3---35898999899999864
Q ss_pred CCCCHHHHHHHHHHHHHHCC
Q ss_conf 68996699999999996110
Q 000737 1157 YDDDLSVRQACRNTLKQVAP 1176 (1322)
Q Consensus 1157 ~D~~~~V~~ack~tL~~~a~ 1176 (1322)
+|++++||+++-.+++.++.
T Consensus 1016 ~d~~~~vr~~a~~~l~~~~~ 1035 (1230)
T 1u6g_C 1016 EDPDLNVRRVALVTFNSAAH 1035 (1230)
T ss_dssp SSSSTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH
T ss_conf 89858799999999999984
No 4
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=149.10 Aligned_cols=291 Identities=16% Similarity=0.131 Sum_probs=146.7
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCH---HCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCC--HHHHHHH
Q ss_conf 999986320667452389999999972068741---10599999999741079992478564200258884--2576668
Q 000737 984 CLILTKSINRQQRFQREAAAAALSEFVRYSGGF---DSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS--IHIHQYA 1058 (1322)
Q Consensus 984 l~~l~~~l~s~~~~~Ri~a~aflsEll~~~~~~---~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~la~--~~v~~~~ 1058 (1322)
+..+...++.+++.-|.+|...++++....... ....+.+++.+...++|+++.||..+...|+.++. .+ ....
T Consensus 283 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~-~~~~ 361 (588)
T 1b3u_A 283 VPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK-DNTI 361 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH-HHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_conf 999999858995899999998799999972744436579999999999986199889999999999999888627-6788
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 67999999310368858999999999998623994651142786798732536569956899999999997510588605
Q 000737 1059 TQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQR 1138 (1322)
Q Consensus 1059 ~~lL~all~~L~d~d~~V~leam~~L~~il~~l~~~~~~~~~~~i~~~lr~lf~de~~~vR~aAi~lfG~L~~~~~~~~~ 1138 (1322)
+.++|.+...+.|.+++|+..++.+|+.+....+... +...+...+..+++|.+..+|.+++.++|.++...+..
T Consensus 362 ~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~---~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~-- 436 (588)
T 1b3u_A 362 EHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQ---LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE-- 436 (588)
T ss_dssp HHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHH---HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG--
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHH---HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHH--
T ss_conf 8899999998379836899999998999997549898---98888999999835998139999999999999880989--
Q ss_pred HHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHCCHHHH-HH-HHHHCCC--CCCCCC---CCCHHHHHHHHHHHH
Q ss_conf 7699999986778987-32689966999999999961101334-56-6421256--677789---887589999999999
Q 000737 1139 EAFLEQIHAMLPRLIL-HIYDDDLSVRQACRNTLKQVAPFMEI-GV-YGIFNSH--CFNSDH---RSDYETFVRDLTRQF 1210 (1322)
Q Consensus 1139 ~~~~~qv~~~LvpLll-HL~D~~~~V~~ack~tL~~~a~~L~~-~l-~~l~~~~--~~~~~~---~l~~~~f~~~l~k~L 1210 (1322)
.+.++ ++|.++ .++|++..||.++..+++.++..++. .. ..++... ...+.. +..+-..+..++..+
T Consensus 437 -~~~~~----l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~ 511 (588)
T 1b3u_A 437 -FFDEK----LNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVC 511 (588)
T ss_dssp -GCCHH----HHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHH----HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
T ss_conf -89999----9999998825981999999999999999996844578889999999831898799999999999999766
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 98291049999999976520999246798999998730259135531016999999999886229884789999999999
Q 000737 1211 VQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGW 1290 (1322)
Q Consensus 1211 ~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~ 1290 (1322)
... .....++...+..++++.+.+|.+|+..+|.+...+..+.. .+.+.+.|.. +..|+|+.||..|.+|++.
T Consensus 512 ~~~--~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~----~~~~~p~l~~-l~~d~d~~vr~~a~~al~~ 584 (588)
T 1b3u_A 512 GQD--ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL----QSEVKPILEK-LTQDQDVDVKYFAQEALTV 584 (588)
T ss_dssp HHH--HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHH----HHHHHHHHHH-HTTCSSHHHHHHHHHHHHH
T ss_pred CHH--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHHH----HHHHHHHHHH-HCCCCCHHHHHHHHHHHHH
T ss_conf 989--99999999998667899862799999999999998653645----9999999998-7479966699999999997
Q ss_pred HH
Q ss_conf 99
Q 000737 1291 LL 1292 (1322)
Q Consensus 1291 l~ 1292 (1322)
+.
T Consensus 585 l~ 586 (588)
T 1b3u_A 585 LS 586 (588)
T ss_dssp TT
T ss_pred HH
T ss_conf 63
No 5
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=148.03 Aligned_cols=262 Identities=13% Similarity=0.129 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHHHCCCC-HHCHHHHHHHHHHHHCCCCCH-HHHHHHHHCCCCCCC---HHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 38999999997206874-110599999999741079992-478564200258884---2576668679999993103688
Q 000737 999 REAAAAALSEFVRYSGG-FDSLLEQMVEALCRHVSDESP-TVRGLCLRGLVQIPS---IHIHQYATQVLSVILALLDDLD 1073 (1322)
Q Consensus 999 Ri~a~aflsEll~~~~~-~~~ll~~~~~~L~~~l~D~~~-~VR~lalrGLg~la~---~~v~~~~~~lL~all~~L~d~d 1073 (1322)
|..++..++.++...+. .....+.+++.+.+.+++.++ .||.-++..++.++. .+...|.+.+++.++..+.+.+
T Consensus 573 ~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~ 652 (861)
T 2bpt_A 573 QSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVD 652 (861)
T ss_dssp HHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999998556347899999999999974678875799999999999999766099999999999998865566
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCC--HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 589999999999986239946511427867987325365699--568999999999975105886057699999986778
Q 000737 1074 ESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMN--VKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPR 1151 (1322)
Q Consensus 1074 ~~V~leam~~L~~il~~l~~~~~~~~~~~i~~~lr~lf~de~--~~vR~aAi~lfG~L~~~~~~~~~~~~~~qv~~~Lvp 1151 (1322)
..++..++.+++.+...++ ..+.++...+...+...+++++ ..+|..++.++|.++... |....+|.++++..+..
T Consensus 653 ~~vr~~a~~~l~~l~~~~~-~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~-~~~~~~~l~~~l~~l~~ 730 (861)
T 2bpt_A 653 SPVSITAVGFIADISNSLE-EDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNI-GADFIPYLNDIMALCVA 730 (861)
T ss_dssp SHHHHHHHHHHHHHHHHTG-GGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHH-GGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHC-HHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_conf 7899999999999998745-403111999999999972786556766599999999999984-05089999999999999
Q ss_pred HHHHCC---CCC-----HHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 987326---899-----669999999999611013345664212566777898875899999999999829104999999
Q 000737 1152 LILHIY---DDD-----LSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMG 1223 (1322)
Q Consensus 1152 LllHL~---D~~-----~~V~~ack~tL~~~a~~L~~~l~~l~~~~~~~~~~~l~~~~f~~~l~k~L~~~~~~~~~~~l~ 1223 (1322)
.+-+-. |++ ..|+.++-.++..++.-++-. ...| ..++..+...+..
T Consensus 731 ~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~-~~~~-------------~~~~~~i~~~l~~----------- 785 (861)
T 2bpt_A 731 AQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDK-PEAL-------------FPYVGTIFQFIAQ----------- 785 (861)
T ss_dssp HHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTC-HHHH-------------GGGHHHHHHHHHH-----------
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHH-------------HHHHHHHHHHHHH-----------
T ss_conf 97367899975889999999999999999999998267-7889-------------9999999999999-----------
Q ss_pred HHHHHHCC---C-CHHHHHHHHHHHHHHCCCC-CHHHHHHCCHH-HHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHH
Q ss_conf 99765209---9-9246798999998730259-13553101699-99999998862--29884789999999999999
Q 000737 1224 STIQAFEA---P-WPIIQANAIYFSSSILCLC-DDQHILSLFYT-QVFGLLVVKLS--QSADAIVRATCSSSLGWLLK 1293 (1322)
Q Consensus 1224 ~~l~y~kS---~-~~~IR~aA~~fiG~l~~~l-~~~~~~~~~~e-~l~~~L~~~Ll--~Dpdp~VR~~Aa~aL~~l~k 1293 (1322)
.+.+ + ...+|.+|+..+|.+...+ ..+... ... .++..|...+. ++.+..|+..|+-|++.+.+
T Consensus 786 ----~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~--~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~~ 857 (861)
T 2bpt_A 786 ----VAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQ--FYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQKR 857 (861)
T ss_dssp ----HHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGG--GTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred ----HHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHH--HHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf ----87485557869999999999999998828824889--8726799999998853557887789999999999998
No 6
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=140.60 Aligned_cols=883 Identities=13% Similarity=0.098 Sum_probs=405.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 1443786288887100367777899404742999999999972310055--70899999999843201899936676999
Q 000737 225 IDLFWQDEIPKMKAYVSDTEDLKLDPSYQETWDDMIINFLAESLDVVQE--TDWLISLGNAFTEQYVLYTPDDDHSALLH 302 (1322)
Q Consensus 225 l~~~W~~~Ip~L~~~L~~~~~~~~~~~~~~~We~~Ll~fL~~sl~~i~d--~~W~~~L~~~l~~q~~~y~~~~~eK~fL~ 302 (1322)
....|..-+|.|.+.++++.+ + .-.+.-+..+.+.+....+ ......+...+...+. .+.+.-+.--.
T Consensus 127 ~~~~~~~llp~L~~~l~~~~~------~--~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~--~~~~~vR~~a~ 196 (1230)
T 1u6g_C 127 AANVCKKITGRLTSAIAKQED------V--SVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLT--SPRLAVRKRTI 196 (1230)
T ss_dssp HHHHHHHHHHHHHHHHSCCSC------H--HHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGG--CSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCC------H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHH
T ss_conf 788999999999998757884------6--7999999999999998276778879999999999875--99689999999
Q ss_pred HHHHHHHHHCCCHH---HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHHCC
Q ss_conf 99999988117955---899999999883186885101469999999962068999999999885100110012221014
Q 000737 303 RCLGILLQKVADRN---YVCDKIDWMYKQANIAIPTNRLGLAKAMGLVAASHLDAVLEMLKGILDNIGQSLFQRLLSFFS 379 (1322)
Q Consensus 303 k~~G~~L~~~~~~~---~V~~~L~~ll~~~~~~~~~ereG~A~~~G~~A~~Hld~vL~~L~~~~~~~~~~~~~~~l~~~k 379 (1322)
+++|.+.....+.. ++...+..+.. . .+...|.+.+.++|..+...-+ .+..+.. ....-++..+.
T Consensus 197 ~al~~l~~~~~~~~~~~~l~~l~~~L~~-~--~~~~~r~~a~~~l~~l~~~~~~----~~~~~l~----~l~~~ll~~l~ 265 (1230)
T 1u6g_C 197 IALGHLVMSCGNIVFVDLIEHLLSELSK-N--DSMSTTRTYIQCIAAISRQAGH----RIGEYLE----KIIPLVVKFCN 265 (1230)
T ss_dssp HHHHHHTTTC----CTTHHHHHHHHHHH-T--CSSCSCTTHHHHHHHHHHHSSG----GGTTSCT----THHHHHHHHHS
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHCC-C--CCHHHHHHHHHHHHHHHHHHHH----HHHHHHH----HHHHHHHHHHC
T ss_conf 9999999856899999999999998616-7--7556899999999999998689----8998899----99999999866
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 65333114769999999899998309924689999887544556543103754689999999999999975322169976
Q 000737 380 NSYRMEESDDIHAALALMYGYAAKYAPSTVIEARIDALVGTNMLSRLLHVRHHTAKQAVITAIDLLGRAVINAAENGASF 459 (1322)
Q Consensus 380 ~~~~~~e~~~~ks~l~l~yG~va~~ap~~~il~~ve~~I~~~i~~~~~~~kd~~~K~s~l~si~~i~~ai~~~~~~~~~f 459 (1322)
|. .+.+|.+.+.+.|.++..++.+ +.+.++. ++..++..+ ..|+... +-..-.. ........+....+
T Consensus 266 d~-----~~~vR~~a~~~l~~l~~~~~~~-~~~~l~~-li~~ll~~l--~~d~~~~--~~~d~~~-~~~~~~~~~~~~~~ 333 (1230)
T 1u6g_C 266 VD-----DDELREYCIQAFESFVRRCPKE-VYPHVST-IINICLKYL--TYDPNYN--YDDEDED-ENAMDADGGDDDDQ 333 (1230)
T ss_dssp SC-----CTTTHHHHHHHHHHHHHCTTCC-CHHHHHH-HHHHHTTCC--CCC----------------------------
T ss_pred CC-----CHHHHHHHHHHHHHHHHHCHHH-HHHHHHH-HHHHHHHHH--CCCCCCC--CCCCCCC-CCCCCCCCCCCCHH
T ss_conf 89-----7789999999999999978487-7776899-999999982--7899888--7644110-11223344653011
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH-HCCCCCCCCC-CCH
Q ss_conf 88787999999998724688987778234556799999987200134577779367989988736-3322689990-108
Q 000737 460 PLKKRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEPKLTIETRNHVMKATL-GFFALPNDPI-DVV 537 (1322)
Q Consensus 460 ~f~~k~eLl~~l~~~i~~Ep~~~l~t~~~~l~~~r~~al~a~~~L~~l~P~l~~e~~~~ll~~~~-~~~~lp~~~~-~l~ 537 (1322)
.. -+ .+.. + .+. .-.+|..|..++..+....|. .-...+...+ .+......+. ..-
T Consensus 334 ~~------~~---~~~~-~-~d~-------~~~vR~~A~~~l~~l~~~~~~----~~~~~~~~l~~~l~~~l~d~~~~Vr 391 (1230)
T 1u6g_C 334 GS------DD---EYSD-D-DDM-------SWKVRRAAAKCLDAVVSTRHE----MLPEFYKTVSPALISRFKEREENVK 391 (1230)
T ss_dssp ----------------------C-------TTHHHHHHHHHHHHHHTTCCT----THHHHHTTTHHHHHSTTSCSSSHHH
T ss_pred HC------CC---CCCC-C-CCC-------CHHHHHHHHHHHHHHHHHCHH----HHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 00------13---6664-5-556-------779999999999999974666----7999999998999987179865799
Q ss_pred HHHHHHHHHHHHHHHHHCC-CCC-------CCCHHHH----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999999970158-887-------7749999----999997778730924887657999999999999842210
Q 000737 538 NPLIDNLITLLCAILLTSG-EDG-------RSRADQL----LHILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVI 605 (1322)
Q Consensus 538 ~~~~~aL~~lL~~ll~~~~-~d~-------~~~~~~L----~~il~~l~pwl~S~~~hER~RA~~~~~~lL~~f~~~~~~ 605 (1322)
...+.++..++..+-.... .++ +.....+ ..+++.+.+.++++....|+.++.....+......
T Consensus 392 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~---- 467 (1230)
T 1u6g_C 392 ADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPG---- 467 (1230)
T ss_dssp HHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTT----
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHH----
T ss_conf 9999999999997242434346752013564559999987469999999986137787999999999999997611----
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCH--HHHHHHHHHHHHHHHHHHHC
Q ss_conf 3445788887651244544210357789976567711222345688985246568993--69999999999999988309
Q 000737 606 GYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRVIMYLPRCADTDS--EVRKISAQILDQLFSISLSL 683 (1322)
Q Consensus 606 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~ps~f~~~~~~~~~lG~Lvg~l~prC~D~~~--~ir~~A~~~i~~Ll~I~l~~ 683 (1322)
.+. +.+..++..+.-...|++. .+|..|+..+..++.- .
T Consensus 468 --------------------------~l~----------~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~---~ 508 (1230)
T 1u6g_C 468 --------------------------ALT----------QHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCN---H 508 (1230)
T ss_dssp --------------------------TTG----------GGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHS---S
T ss_pred --------------------------HHH----------HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH---C
T ss_conf --------------------------057----------7799999999999748788516899999999999983---8
Q ss_pred CCCCCCCCCCCHHHHHHHHHCHHHH-HHHHHCCCCCCHHHHHH---HHHHHHHHCCCH----------HHHHHHHHHHHH
Q ss_conf 8888898886123325542101899-99850599999169999---999999500891----------279999999998
Q 000737 684 PRPVGSSSGIDLELSYGALSSLEDV-IAILRSDASIDPSEVFN---RIVSSVCILLTK----------DELVATLHSCTT 749 (1322)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~l~~~~~~-i~~l~~~~~~~~~~~~~---~i~~~i~~~L~~----------~el~~li~~lle 749 (1322)
.+... . .-+..+-.. +..+ .+ .. ..+-. ..+..+.+.+.+ .-+..++..++.
T Consensus 509 ---~~~~~----~---~~l~~llp~L~~~l-~d--~~-~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~ 574 (1230)
T 1u6g_C 509 ---SPQVF----H---PHVQALVPPVVACV-GD--PF-YKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIK 574 (1230)
T ss_dssp ---CGGGG----H---HHHTTTHHHHHHHH-TC--SS-HHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHH
T ss_pred ---CHHHH----H---HHHHHHHHHHHHHH-CC--CC-HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf ---98878----8---67999999999997-14--24-689999999999999871675556532327899999999999
Q ss_pred HC--CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 31--6899002889999999998510476664428789999998741127199999999999998730499766204665
Q 000737 750 AI--CDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSKIVFNEVLA 827 (1322)
Q Consensus 750 ~L--~d~~~~~~~~A~~~L~~il~~rG~~L~e~~V~~I~~~i~~~L~~i~~~~~r~~~l~aI~~La~~h~~~lp~d~w~a 827 (1322)
.+ .|.+...+.+|...+..+.+.-|..+... ++.++..+...+.. +..|..+.+++..++... .+..++.|..
T Consensus 575 ~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~-~~~~l~~L~~~l~~---e~~r~~~~~al~~i~~~~-~~~~~~~~~~ 649 (1230)
T 1u6g_C 575 RLKAADIDQEVKERAISCMGQIICNLGDNLGSD-LPNTLQIFLERLKN---EITRLTTVKALTLIAGSP-LKIDLRPVLG 649 (1230)
T ss_dssp HHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTH-HHHHHHHHHHHTTS---SSHHHHHHHHHHHHTTCS-SCCCCHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHCC-CCCCHHHHHH
T ss_conf 873269988999999999999999827032443-88999999988445---305999999999998185-6443688899
Q ss_pred H---------HCCCCH-----HHHHHHHCC----CCC---CHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 1---------058301-----446762208----974---0011003777788788898876210479999999999880
Q 000737 828 T---------AGKDIV-----TKDISRLRG----GWP---MQDAFHGDMEKGDYSSHSADTWIDDDILQAAILALTAFFR 886 (1322)
Q Consensus 828 l---------~~~~~~-----~~~l~~l~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~laa~~aL~Ell~ 886 (1322)
. ..+... ...+..+.. ..+ +...| ....+- .. .+ .......+..+|..++.
T Consensus 650 ~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l-~~ll~l---l~--~~--D~~~~~~~~~~L~~l~~ 721 (1230)
T 1u6g_C 650 EGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVL-DELPPL---IS--ES--DMHVSQMAISFLTTLAK 721 (1230)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHH-TTCGGG---SC--TT--CHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH-HHHHHH---CC--CC--HHHHHHHHHHHHHHHHH
T ss_conf 999999999986788899999999999996043338989999999-998763---57--54--18789999999999988
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH---CC--HHHHHHHHH-CCCCCC-HH
Q ss_conf 388210788998639999999998633315798999882799999999999982---73--789999974-399886-24
Q 000737 887 GGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEPLRAILTSFQAFCECV---GD--LEMRKILAR-DGEQND-KE 959 (1322)
Q Consensus 887 ~~~~~~~~~v~~~fp~Ll~aLL~ql~~~~~l~~~~~~~P~~~al~Alk~ll~~~---g~--~~v~~~Le~-~~~w~~-~~ 959 (1322)
..+ ..+...++.++-.++..+.... .. ..+++++..++... +. ......+.. ...|.. ..
T Consensus 722 ~~~----~~~~~~~~~~l~~~~~~l~~~~-------~~--~~~~~~l~~~~~~l~~~~~~~~~~~~ll~~l~~~~~~~~~ 788 (1230)
T 1u6g_C 722 VYP----SSLSKISGSILNELIGLVRSPL-------LQ--GGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQST 788 (1230)
T ss_dssp SCG----GGGGGTTTTTHHHHHHHHTCTT-------CC--HHHHHHHHHHHHHHHTTCCTTCSHHHHHHHHSTTTTTC--
T ss_pred HCC----HHHHHHHHHHHHHHHHHHCCCC-------CC--HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 491----2677767768999999975862-------10--5789999999999983478878899999998500357887
Q ss_pred --HHHHHHHHHHHHH---HHHCCHHHHHHHHHHHHHHCCC--CCCCHHHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHCC
Q ss_conf --2798699999888---5109722899999998632066--74523899999999720687411059999999974107
Q 000737 960 --KWINLIGDVAGCV---SIKRPKEVQTICLILTKSINRQ--QRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVS 1032 (1322)
Q Consensus 960 --~~~~gV~lLar~l---~~~~~~~i~~il~~l~~~l~s~--~~~~Ri~a~aflsEll~~~~~~~~ll~~~~~~L~~~l~ 1032 (1322)
.+.+....+++++ +...++....++..+...++++ .+..+..+..+++|+-...... .. ..+...+...+.
T Consensus 789 ~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~-~~-~~l~~~~~~~l~ 866 (1230)
T 1u6g_C 789 ALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLS-GQ-LELKSVILEAFS 866 (1230)
T ss_dssp --CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHSCCC-SC-THHHHHHHHGGG
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCC-CC-CCHHHHHHHHHC
T ss_conf 3200010489999999999846566689999999983788766799999999999861567876-56-418999999847
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 99924785642002588842576668679999993103688589999999999986239946511427867987325365
Q 000737 1033 DESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQV 1112 (1322)
Q Consensus 1033 D~~~~VR~lalrGLg~la~~~v~~~~~~lL~all~~L~d~d~~V~leam~~L~~il~~l~~~~~~~~~~~i~~~lr~lf~ 1112 (1322)
|+++.||..|..+||.++.... +..+|.+++++.+. ......++.+|+.++...+...+.++...|...+....+
T Consensus 867 ~~~~~Vr~aAa~aLg~l~~~~~----~~~lp~ll~~l~~~-~~~~~~~l~al~e~i~~~~~~~~~~~~~~i~~~L~~~~~ 941 (1230)
T 1u6g_C 867 SPSEEVKSAASYALGSISVGNL----PEYLPFVLQEITSQ-PKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCE 941 (1230)
T ss_dssp CSCHHHHHHHHHHHHHHHHHTH----HHHHHHHHHHHHSC-GGGHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHHHHCCCH----HHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 9977899999999687752699----98899999987266-032498899999998238766677669999999998733
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCC
Q ss_conf 699568999999999975105886057699999986778987-3268996699999999996110133456642125667
Q 000737 1113 SMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLIL-HIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCF 1191 (1322)
Q Consensus 1113 de~~~vR~aAi~lfG~L~~~~~~~~~~~~~~qv~~~LvpLll-HL~D~~~~V~~ack~tL~~~a~~L~~~l~~l~~~~~~ 1191 (1322)
++++.+|..+...+|.+..... ..+.|.+. ++.|+++.+|..|-.+++.+....+
T Consensus 942 ~~~~~~r~~~a~~lg~l~~~~~------------~~l~p~l~~~l~~~~~~~R~~~~~~l~~~~~~~~------------ 997 (1230)
T 1u6g_C 942 CAEEGTRNVVAECLGKLTLIDP------------ETLLPRLKGYLISGSSYARSSVVTAVKFTISDHP------------ 997 (1230)
T ss_dssp CSSTTHHHHHHHHHHHHHHSSG------------GGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSC------------
T ss_pred CCCHHHHHHHHHHHHHHHCCCH------------HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC------------
T ss_conf 8304468999988756650676------------8888999998569978899999999999970682------------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHH
Q ss_conf 77898875899999999999829104999999997652099924679899999873025913553101699999999988
Q 000737 1192 NSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVK 1271 (1322)
Q Consensus 1192 ~~~~~l~~~~f~~~l~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~l~~~~~~~~~~e~l~~~L~~~ 1271 (1322)
-.+.. .+..++...+..++++..+||++|+.-+|.+.++.+.-... ....+.+.|..
T Consensus 998 -----~~~~~---------------~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~--~l~~~lp~l~~- 1054 (1230)
T 1u6g_C 998 -----QPIDP---------------LLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRD--LLDTVLPHLYN- 1054 (1230)
T ss_dssp -----CTHHH---------------HHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGG--GHHHHHHHHHH-
T ss_pred -----HHHHH---------------HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHH--HHHHHHHHHHH-
T ss_conf -----33589---------------89998999998648985879999999999998428576897--79889899998-
Q ss_pred HCCCCC------------------HHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 622988------------------4789999999999999810045
Q 000737 1272 LSQSAD------------------AIVRATCSSSLGWLLKSINSHS 1299 (1322)
Q Consensus 1272 Ll~Dpd------------------p~VR~~Aa~aL~~l~k~~~~~~ 1299 (1322)
..+.++ -.||..|-++++.+.+.+....
T Consensus 1055 ~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~~i 1100 (1230)
T 1u6g_C 1055 ETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRL 1100 (1230)
T ss_dssp TTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSS
T ss_pred HHCCCHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 8302687601330589602367748999999999999999888747
No 7
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=139.41 Aligned_cols=249 Identities=12% Similarity=0.072 Sum_probs=141.8
Q ss_pred HHHHHHHHHHCCCCC--HHHHHHHHHCCCCCCC---HHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 999999974107999--2478564200258884---257666867999999310368-8589999999999986239946
Q 000737 1021 EQMVEALCRHVSDES--PTVRGLCLRGLVQIPS---IHIHQYATQVLSVILALLDDL-DESVQLTAVSCLLTILKSSSKD 1094 (1322)
Q Consensus 1021 ~~~~~~L~~~l~D~~--~~VR~lalrGLg~la~---~~v~~~~~~lL~all~~L~d~-d~~V~leam~~L~~il~~l~~~ 1094 (1322)
..+++.+.+.+++++ +.||.-+++.++.++. .+...|.+.+++.++..+.+. +..|...++.+++.+....+ .
T Consensus 605 ~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~-~ 683 (876)
T 1qgr_A 605 DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQ-S 683 (876)
T ss_dssp HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHG-G
T ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-H
T ss_conf 999999999998536888850899999999999987609999999999999987586508799999999999999887-8
Q ss_pred CCHHHHHHHHHHHCCCCCC--CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC--CCH-------HH
Q ss_conf 5114278679873253656--995689999999999751058860576999999867789873268--996-------69
Q 000737 1095 AVEPILLNLSVRLRNLQVS--MNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYD--DDL-------SV 1163 (1322)
Q Consensus 1095 ~~~~~~~~i~~~lr~lf~d--e~~~vR~aAi~lfG~L~~~~~~~~~~~~~~qv~~~LvpLllHL~D--~~~-------~V 1163 (1322)
.+.++...+...+...+.+ .+.++|..++.++|.++... |....++..+++..+...+ +..+ +++ .+
T Consensus 684 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~-g~~~~~~l~~~~~~l~~~~-~~~~~~~d~~~~~~~~~~ 761 (876)
T 1qgr_A 684 NIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAI-GGEFKKYLEVVLNTLQQAS-QAQVDKSDYDMVDYLNEL 761 (876)
T ss_dssp GGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHH-GGGGGGGHHHHHHHHHHHH-TCCCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHH-HCCCCCCCHHHHHHHHHH
T ss_conf 54645999999999974871233876399999999999970-3527999999999999998-555899975889999999
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC--CHHHHHHHH
Q ss_conf 999999999611013345664212566777898875899999999999829104999999997652099--924679899
Q 000737 1164 RQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAP--WPIIQANAI 1241 (1322)
Q Consensus 1164 ~~ack~tL~~~a~~L~~~l~~l~~~~~~~~~~~l~~~~f~~~l~k~L~~~~~~~~~~~l~~~l~y~kS~--~~~IR~aA~ 1241 (1322)
+.++..++..+...++......+.+. ..+...+...+.-.....+++ +..+|.+|+
T Consensus 762 r~~~~~~~~~i~~~~~~~~~~~~~~~----------------------~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~ 819 (876)
T 1qgr_A 762 RESCLEAYTGIVQGLKGDQENVHPDV----------------------MLVQPRVEFILSFIDHIAGDEDHTDGVVACAA 819 (876)
T ss_dssp HHHHHHHHHHHHHHHHCSSSSCCGGG----------------------GGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHH----------------------HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 99999999999999745755555438----------------------89999999999999998658888889999999
Q ss_pred HHHHHHCCCCCH-HHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999873025913-553101699999999988622988478999999999999981
Q 000737 1242 YFSSSILCLCDD-QHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSI 1295 (1322)
Q Consensus 1242 ~fiG~l~~~l~~-~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~ 1295 (1322)
..+|.+....+. +...... +.++..|....++|+++.||..|+.|+|.+.+.-
T Consensus 820 ~~l~~l~~~~~~~~~~~~~~-~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~~~~ 873 (876)
T 1qgr_A 820 GLIGDLCTAFGKDVLKLVEA-RPMIHELLTEGRRSKTNKAKTLARWATKELRKLK 873 (876)
T ss_dssp HHHHHHHHHHCTHHHHHHHT-SHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHH-CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999998828488999970-4899999998754688768999999999999753
No 8
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=138.82 Aligned_cols=182 Identities=15% Similarity=0.141 Sum_probs=82.7
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCH-HHHHHHHHHHH
Q ss_conf 99986320667452389999999972068741105999999997410799924785642002588842-57666867999
Q 000737 985 LILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-HIHQYATQVLS 1063 (1322)
Q Consensus 985 ~~l~~~l~s~~~~~Ri~a~aflsEll~~~~~~~~ll~~~~~~L~~~l~D~~~~VR~lalrGLg~la~~-~v~~~~~~lL~ 1063 (1322)
..+...++..++.-|..++..++.+...... ....+.+++.+.+.++|++..||..++..++.++.. ....+.+.+++
T Consensus 366 p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~-~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~ 444 (588)
T 1b3u_A 366 PLFLAQLKDECPEVRLNIISNLDCVNEVIGI-RQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNS 444 (588)
T ss_dssp HHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH-HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 9999983798368999999989999975498-989888899999983599813999999999999988098989999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 99931036885899999999999862399465114278679873253656995689999999999751058860576999
Q 000737 1064 VILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLE 1143 (1322)
Q Consensus 1064 all~~L~d~d~~V~leam~~L~~il~~l~~~~~~~~~~~i~~~lr~lf~de~~~vR~aAi~lfG~L~~~~~~~~~~~~~~ 1143 (1322)
.++..|.|.+..|+..|+.+++.+....+.. .+...+...+..++.+++..+|.+++.++|.++...+ ...+.+
T Consensus 445 ~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~---~~~~~~ 518 (588)
T 1b3u_A 445 LCMAWLVDHVYAIREAATSNLKKLVEKFGKE---WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG---QDITTK 518 (588)
T ss_dssp HHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH---HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC---HHHHHH
T ss_conf 9998825981999999999999999996844---5788899999998318987999999999999997669---899999
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 999867789873268996699999999996110
Q 000737 1144 QIHAMLPRLILHIYDDDLSVRQACRNTLKQVAP 1176 (1322)
Q Consensus 1144 qv~~~LvpLllHL~D~~~~V~~ack~tL~~~a~ 1176 (1322)
+ .++.++-.+.|++++||..+..+|+.++.
T Consensus 519 ~---~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 548 (588)
T 1b3u_A 519 H---MLPTVLRMAGDPVANVRFNVAKSLQKIGP 548 (588)
T ss_dssp H---THHHHHHGGGCSCHHHHHHHHHHHHHHGG
T ss_pred H---HHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 9---99999866789986279999999999999
No 9
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=136.88 Aligned_cols=421 Identities=12% Similarity=0.131 Sum_probs=252.4
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 34568898524656899369999999999999988309888889888612332554210189999850599999169999
Q 000737 646 CLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSEVFN 725 (1322)
Q Consensus 646 ~lG~Lvg~l~prC~D~~~~ir~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~~~~~~~ 725 (1322)
.+..++..+...+.|+++.||..|..++..+... ..
T Consensus 408 ~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~-~~------------------------------------------- 443 (861)
T 2bpt_A 408 YVHQALPSILNLMNDQSLQVKETTAWCIGRIADS-VA------------------------------------------- 443 (861)
T ss_dssp HHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH-HG-------------------------------------------
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH-HH-------------------------------------------
T ss_conf 8999999999882899599999999999999987-35-------------------------------------------
Q ss_pred HHHHHHHHCC-CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC----CCCCCCCHHHHHHHHHHHHHHCC-CH
Q ss_conf 9999995008-912799999999983168990028899999999985104----76664428789999998741127-19
Q 000737 726 RIVSSVCILL-TKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRG----NELSETDVSRTTQSLLSAAVHIT-DK 799 (1322)
Q Consensus 726 ~i~~~i~~~L-~~~el~~li~~lle~L~d~~~~~~~~A~~~L~~il~~rG----~~L~e~~V~~I~~~i~~~L~~i~-~~ 799 (1322)
..+ +...+..++..+++++.|. .....+|+..+..+.+..+ ..+... ++.|+..+...+.+.. +.
T Consensus 444 -------~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~-~~~il~~L~~~l~~~d~~~ 514 (861)
T 2bpt_A 444 -------ESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNF-YPALVDGLIGAANRIDNEF 514 (861)
T ss_dssp -------GGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGG-HHHHHHHHHHHHTCSCCGG
T ss_pred -------HHCCCHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHHHHHHHHCCCCCH
T ss_conf -------40487888999999999976447-28999999999999986231354246899-9999999999985758615
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 99999999999987304997662046651058301446762208974001100377778878889887621047999999
Q 000737 800 HLRLETLGAISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHGDMEKGDYSSHSADTWIDDDILQAAIL 879 (1322)
Q Consensus 800 ~~r~~~l~aI~~La~~h~~~lp~d~w~al~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~laa~~ 879 (1322)
.+|..++.++..++....... .... +..+...+..+....++..... + . .........-..+..
T Consensus 515 ~vr~~a~~al~~l~~~~~~~~--~~~~----~~l~~~l~~~l~~~~~~~~~i~----~-----~-~~~~~~~~~~~~~~~ 578 (861)
T 2bpt_A 515 NARASAFSALTTMVEYATDTV--AETS----ASISTFVMDKLGQTMSVDENQL----T-----L-EDAQSLQELQSNILT 578 (861)
T ss_dssp GHHHHHHHHHHHHHHHCCGGG--HHHH----HHHHHHHHHHHHHHTTSCGGGC----C-----H-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCHHH--HHHH----HHHHHHHHHHHHHHHHHHCCCC----C-----H-HHHHHHHHHHHHHHH
T ss_conf 899999999999999762656--9999----9999999999998875320138----8-----5-567779999999999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC-CCH
Q ss_conf 9999880388210788998639999999998633315798999882799999999999982737899999743998-862
Q 000737 880 ALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEPLRAILTSFQAFCECVGDLEMRKILARDGEQ-NDK 958 (1322)
Q Consensus 880 aL~Ell~~~~~~~~~~v~~~fp~Ll~aLL~ql~~~~~l~~~~~~~P~~~al~Alk~ll~~~g~~~v~~~Le~~~~w-~~~ 958 (1322)
+|..+...-++.....+ ++++-.++ ..+... .+ .-.
T Consensus 579 ~l~~l~~~~~~~~~~~~----~~l~~~l~--------------------------~~l~~~-------------~~~~v~ 615 (861)
T 2bpt_A 579 VLAAVIRKSPSSVEPVA----DMLMGLFF--------------------------RLLEKK-------------DSAFIE 615 (861)
T ss_dssp HHHHHHHHCGGGTGGGH----HHHHHHHH--------------------------HHHHST-------------TGGGTH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHH--------------------------HHHCCC-------------CCCCHH
T ss_conf 99999998556347899----99999999--------------------------997467-------------887579
Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCC-HHCHHHHHHHHHHHHCCCCC--
Q ss_conf 427986999998885109722899999998632066745238999999997206874-11059999999974107999--
Q 000737 959 EKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGG-FDSLLEQMVEALCRHVSDES-- 1035 (1322)
Q Consensus 959 ~~~~~gV~lLar~l~~~~~~~i~~il~~l~~~l~s~~~~~Ri~a~aflsEll~~~~~-~~~ll~~~~~~L~~~l~D~~-- 1035 (1322)
+.....+..++.++-..-.++++.++..+...+++.+..-|..++..++.+...... .......+++.+.+.+.|++
T Consensus 616 ~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 695 (861)
T 2bpt_A 616 DDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNAR 695 (861)
T ss_dssp HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999999997660999999999999988655667899999999999998745403111999999999972786556
Q ss_pred HHHHHHHHHCCCCCCC---HHHHHHHHHHHHHHHHHCCCCC-----------HHHHHHHHHHHHHHHCCCCC--CCCHHH
Q ss_conf 2478564200258884---2576668679999993103688-----------58999999999998623994--651142
Q 000737 1036 PTVRGLCLRGLVQIPS---IHIHQYATQVLSVILALLDDLD-----------ESVQLTAVSCLLTILKSSSK--DAVEPI 1099 (1322)
Q Consensus 1036 ~~VR~lalrGLg~la~---~~v~~~~~~lL~all~~L~d~d-----------~~V~leam~~L~~il~~l~~--~~~~~~ 1099 (1322)
+.+|..++.++|.++. +....|.+.+++.++..+.... ..++..++.++..+...++. ..+.++
T Consensus 696 ~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~ 775 (861)
T 2bpt_A 696 RELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPY 775 (861)
T ss_dssp TTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 76659999999999998405089999999999999973678999758899999999999999999999982677889999
Q ss_pred HHHHHHHHCCCCCCC----CHHHHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 786798732536569----95689999999999751058860576999-9998677898732689966999999999961
Q 000737 1100 LLNLSVRLRNLQVSM----NVKMRRNAFAAFGALSNFGVGSQREAFLE-QIHAMLPRLILHIYDDDLSVRQACRNTLKQV 1174 (1322)
Q Consensus 1100 ~~~i~~~lr~lf~de----~~~vR~aAi~lfG~L~~~~~~~~~~~~~~-qv~~~LvpLllHL~D~~~~V~~ack~tL~~~ 1174 (1322)
...+...+.....|. +..+|.+|+.++|+++...+|....+|.. +++..+...+-+.++.+..|++.|+++++.+
T Consensus 776 ~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~ 855 (861)
T 2bpt_A 776 VGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQ 855 (861)
T ss_dssp HHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999998748555786999999999999999882882488987267999999988535578877899999999999
Q ss_pred CCHH
Q ss_conf 1013
Q 000737 1175 APFM 1178 (1322)
Q Consensus 1175 a~~L 1178 (1322)
+..+
T Consensus 856 ~~~~ 859 (861)
T 2bpt_A 856 KRQL 859 (861)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9873
No 10
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=131.65 Aligned_cols=195 Identities=11% Similarity=0.062 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHCCCC-HHCHHHHHHHHHHHHCCC--CCHHHHHHHHHCCCCCCC--
Q ss_conf 22899999998632066-745238999999997206874-110599999999741079--992478564200258884--
Q 000737 978 KEVQTICLILTKSINRQ-QRFQREAAAAALSEFVRYSGG-FDSLLEQMVEALCRHVSD--ESPTVRGLCLRGLVQIPS-- 1051 (1322)
Q Consensus 978 ~~i~~il~~l~~~l~s~-~~~~Ri~a~aflsEll~~~~~-~~~ll~~~~~~L~~~l~D--~~~~VR~lalrGLg~la~-- 1051 (1322)
+.+..++..+.+.+... ++.-|..|+..++.++..... .....+.++..+.+.+++ .+..+|..++..+|+++.
T Consensus 645 ~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~ 724 (876)
T 1qgr_A 645 KYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAI 724 (876)
T ss_dssp GGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999987586508799999999999999887854645999999999974871233876399999999999970
Q ss_pred -HHHHHHHHHHHHHHHHHCCCCC----H-------HHHHHHHHHHHHHHCCCCC---------CCCHHHHHHHHHHHCCC
Q ss_conf -2576668679999993103688----5-------8999999999998623994---------65114278679873253
Q 000737 1052 -IHIHQYATQVLSVILALLDDLD----E-------SVQLTAVSCLLTILKSSSK---------DAVEPILLNLSVRLRNL 1110 (1322)
Q Consensus 1052 -~~v~~~~~~lL~all~~L~d~d----~-------~V~leam~~L~~il~~l~~---------~~~~~~~~~i~~~lr~l 1110 (1322)
.+...|.+.+++.+...+.+.. + .+...++.++..++..++. ..+.+++..+..-+...
T Consensus 725 g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 804 (876)
T 1qgr_A 725 GGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHI 804 (876)
T ss_dssp GGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 35279999999999999985558999758899999999999999999999974575555543889999999999999998
Q ss_pred CCCC--CHHHHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHC
Q ss_conf 6569--956899999999997510588605769-9999986778987-326899669999999999611
Q 000737 1111 QVSM--NVKMRRNAFAAFGALSNFGVGSQREAF-LEQIHAMLPRLIL-HIYDDDLSVRQACRNTLKQVA 1175 (1322)
Q Consensus 1111 f~de--~~~vR~aAi~lfG~L~~~~~~~~~~~~-~~qv~~~LvpLll-HL~D~~~~V~~ack~tL~~~a 1175 (1322)
.+++ ++.+|.+|+.++|.++...++....+| .+++ +.+++. .+.|+++.||+++.++++.++
T Consensus 805 ~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~---i~~ll~~~l~~~~~~~r~~a~~a~~~~~ 870 (876)
T 1qgr_A 805 AGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPM---IHELLTEGRRSKTNKAKTLARWATKELR 870 (876)
T ss_dssp HTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHH---HHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCHH---HHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 65888888999999999999998828488999970489---9999998754688768999999999999
Done!