Query 000739
Match_columns 1322
No_of_seqs 490 out of 3009
Neff 6.4
Searched_HMMs 46136
Date Mon Apr 1 22:51:24 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000739.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000739hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0298 DEAD box-containing he 100.0 1.2E-95 3E-100 897.3 25.2 1099 45-1320 3-1128(1394)
2 KOG0385 Chromatin remodeling c 100.0 2.8E-81 6.2E-86 737.8 26.9 365 498-926 217-616 (971)
3 KOG0387 Transcription-coupled 100.0 1.3E-75 2.8E-80 694.2 23.3 365 499-924 256-673 (923)
4 KOG0392 SNF2 family DNA-depend 100.0 3.9E-75 8.4E-80 708.8 21.3 372 498-924 1031-1469(1549)
5 KOG0384 Chromodomain-helicase 100.0 2.7E-75 6E-80 714.9 18.1 475 498-1042 420-951 (1373)
6 KOG0389 SNF2 family DNA-depend 100.0 5.1E-71 1.1E-75 654.0 17.1 375 498-929 448-908 (941)
7 PLN03142 Probable chromatin-re 100.0 9.9E-69 2.1E-73 682.7 28.2 364 498-925 219-615 (1033)
8 KOG4439 RNA polymerase II tran 100.0 4.3E-67 9.2E-72 613.0 27.5 397 500-924 385-873 (901)
9 KOG1002 Nucleotide excision re 100.0 5.4E-67 1.2E-71 590.5 25.8 389 499-924 232-764 (791)
10 KOG0391 SNF2 family DNA-depend 100.0 8.2E-68 1.8E-72 635.4 17.4 232 499-788 666-904 (1958)
11 KOG0388 SNF2 family DNA-depend 100.0 8.7E-67 1.9E-71 605.8 16.1 357 498-923 617-1168(1185)
12 KOG0386 Chromatin remodeling c 100.0 4.2E-64 9.2E-69 606.8 16.3 364 498-922 444-851 (1157)
13 KOG0390 DNA repair protein, SN 100.0 1.5E-55 3.2E-60 539.3 27.7 365 498-924 298-722 (776)
14 KOG1001 Helicase-like transcri 100.0 3.9E-52 8.4E-57 513.2 27.0 370 497-924 188-665 (674)
15 COG0553 HepA Superfamily II DN 100.0 1.4E-52 3E-57 546.2 21.9 375 498-922 390-835 (866)
16 KOG1015 Transcription regulato 100.0 2E-48 4.3E-53 462.8 22.3 383 498-919 728-1287(1567)
17 PF00176 SNF2_N: SNF2 family N 100.0 3E-45 6.6E-50 418.7 19.0 241 499-789 59-299 (299)
18 KOG1016 Predicted DNA helicase 100.0 2.3E-41 5E-46 396.0 15.2 391 498-919 312-859 (1387)
19 KOG1000 Chromatin remodeling p 100.0 2.1E-39 4.6E-44 368.7 20.2 352 499-932 242-628 (689)
20 PRK04914 ATP-dependent helicas 100.0 8.2E-38 1.8E-42 399.0 31.1 342 498-923 199-619 (956)
21 KOG0383 Predicted helicase [Ge 100.0 3.2E-38 6.9E-43 384.5 10.7 313 498-876 345-690 (696)
22 TIGR00603 rad25 DNA repair hel 99.9 7.9E-23 1.7E-27 254.4 25.0 299 499-927 299-623 (732)
23 PRK13766 Hef nuclease; Provisi 99.8 1.2E-17 2.6E-22 216.4 19.6 368 499-918 59-488 (773)
24 COG1061 SSL2 DNA or RNA helica 99.4 2.2E-11 4.8E-16 148.0 25.1 298 500-920 82-405 (442)
25 PHA02558 uvsW UvsW helicase; P 99.3 1.8E-10 4E-15 142.5 23.4 99 500-638 160-261 (501)
26 PF04851 ResIII: Type III rest 99.3 3.5E-11 7.5E-16 127.5 13.3 124 500-637 52-183 (184)
27 cd00046 DEXDc DEAD-like helica 99.2 4.4E-11 9.5E-16 119.4 11.5 110 499-636 31-144 (144)
28 smart00487 DEXDc DEAD-like hel 99.2 4.3E-11 9.2E-16 126.9 11.7 114 499-639 55-173 (201)
29 KOG1123 RNA polymerase II tran 98.9 1.3E-09 2.8E-14 126.6 5.5 130 499-656 346-476 (776)
30 PRK11448 hsdR type I restricti 98.9 1.2E-08 2.6E-13 135.3 14.8 116 499-639 464-597 (1123)
31 COG1111 MPH1 ERCC4-like helica 98.8 2.6E-07 5.7E-12 109.4 20.2 128 499-655 59-190 (542)
32 cd00268 DEADc DEAD-box helicas 98.6 4E-07 8.6E-12 99.0 13.6 111 499-637 70-185 (203)
33 TIGR00348 hsdR type I site-spe 98.5 4.3E-07 9.3E-12 116.2 13.3 110 499-639 294-405 (667)
34 TIGR00643 recG ATP-dependent D 98.5 7.5E-07 1.6E-11 113.5 13.7 112 500-641 286-401 (630)
35 PF00270 DEAD: DEAD/DEAH box h 98.4 1.2E-06 2.7E-11 91.8 10.7 118 499-644 45-169 (169)
36 PF13872 AAA_34: P-loop contai 98.3 5.8E-06 1.3E-10 94.3 14.3 144 552-725 136-302 (303)
37 PRK10917 ATP-dependent DNA hel 98.2 4.4E-06 9.4E-11 107.4 12.0 110 500-640 312-423 (681)
38 COG4096 HsdR Type I site-speci 98.2 5.8E-06 1.3E-10 103.2 10.7 106 499-638 216-322 (875)
39 TIGR00614 recQ_fam ATP-depende 98.2 9.5E-06 2.1E-10 100.2 12.6 129 499-653 52-189 (470)
40 PRK01172 ski2-like helicase; P 98.1 2E-05 4.4E-10 101.5 15.3 120 499-654 66-192 (674)
41 PRK10689 transcription-repair 98.1 1.3E-05 2.8E-10 107.4 13.6 112 499-641 650-763 (1147)
42 PRK11192 ATP-dependent RNA hel 98.1 1.8E-05 3.9E-10 96.7 13.8 118 499-643 74-195 (434)
43 TIGR00580 mfd transcription-re 98.1 1.5E-05 3.2E-10 104.7 13.2 112 499-641 501-614 (926)
44 PRK02362 ski2-like helicase; P 98.1 3.2E-05 7E-10 100.6 15.6 115 499-646 68-189 (737)
45 PRK10590 ATP-dependent RNA hel 98.0 3.9E-05 8.4E-10 94.5 14.3 111 500-637 77-191 (456)
46 PRK00254 ski2-like helicase; P 98.0 6.7E-05 1.4E-09 97.5 16.0 115 499-646 69-187 (720)
47 TIGR01389 recQ ATP-dependent D 98.0 4E-05 8.7E-10 97.3 13.2 126 499-651 54-187 (591)
48 PRK11776 ATP-dependent RNA hel 98.0 5.3E-05 1.1E-09 93.3 13.4 111 500-637 74-189 (460)
49 PRK11057 ATP-dependent DNA hel 98.0 4.9E-05 1.1E-09 96.7 13.3 127 499-652 66-200 (607)
50 PTZ00424 helicase 45; Provisio 97.9 7.3E-05 1.6E-09 90.1 13.5 111 499-637 97-212 (401)
51 KOG0354 DEAD-box like helicase 97.9 0.00012 2.5E-09 92.0 15.1 125 499-653 107-237 (746)
52 PLN00206 DEAD-box ATP-dependen 97.9 9.4E-05 2E-09 92.5 13.9 112 499-637 197-311 (518)
53 COG1204 Superfamily II helicas 97.9 6.2E-05 1.3E-09 97.1 12.5 122 499-656 77-205 (766)
54 PTZ00110 helicase; Provisional 97.9 8.8E-05 1.9E-09 93.2 13.4 110 500-636 205-318 (545)
55 PRK04837 ATP-dependent RNA hel 97.8 0.00015 3.2E-09 88.4 14.0 111 499-637 84-201 (423)
56 PRK01297 ATP-dependent RNA hel 97.8 0.0002 4.3E-09 88.7 14.1 113 499-637 163-281 (475)
57 PRK04537 ATP-dependent RNA hel 97.7 0.00026 5.5E-09 89.5 14.1 113 499-637 85-203 (572)
58 PRK11634 ATP-dependent RNA hel 97.7 0.00032 6.9E-09 89.4 14.4 110 500-636 76-190 (629)
59 COG1200 RecG RecG-like helicas 97.7 0.00015 3.3E-09 89.9 9.9 112 500-642 313-427 (677)
60 PRK09401 reverse gyrase; Revie 97.6 0.00042 9.1E-09 93.5 14.3 88 499-611 124-214 (1176)
61 PRK05580 primosome assembly pr 97.6 0.0004 8.7E-09 89.4 13.4 107 499-638 191-306 (679)
62 KOG0298 DEAD box-containing he 97.6 2.6E-05 5.6E-10 100.5 2.0 107 815-921 1214-1338(1394)
63 KOG0331 ATP-dependent RNA heli 97.6 0.0016 3.5E-08 79.6 17.1 107 500-635 167-280 (519)
64 PRK13767 ATP-dependent helicas 97.6 0.00063 1.4E-08 90.1 14.8 113 499-636 85-217 (876)
65 COG1205 Distinct helicase fami 97.6 0.00033 7.1E-09 91.7 12.0 113 500-635 117-241 (851)
66 TIGR03158 cas3_cyano CRISPR-as 97.6 0.00071 1.5E-08 80.8 13.8 125 500-638 41-193 (357)
67 TIGR03817 DECH_helic helicase/ 97.5 0.00094 2E-08 86.8 13.9 112 500-636 83-204 (742)
68 COG4889 Predicted helicase [Ge 97.4 0.00023 4.9E-09 88.5 6.5 115 499-636 207-350 (1518)
69 TIGR00595 priA primosomal prot 97.3 0.00092 2E-08 83.3 10.5 107 499-638 26-141 (505)
70 PLN03137 ATP-dependent DNA hel 97.1 0.0026 5.7E-08 83.8 12.7 130 499-651 501-641 (1195)
71 TIGR01587 cas3_core CRISPR-ass 97.1 0.0014 3E-08 78.0 9.2 120 499-637 30-166 (358)
72 PF07652 Flavi_DEAD: Flaviviru 97.0 0.0028 6E-08 65.5 9.1 101 499-638 34-138 (148)
73 TIGR03714 secA2 accessory Sec 96.9 0.005 1.1E-07 78.9 11.3 118 500-648 113-232 (762)
74 COG1197 Mfd Transcription-repa 96.8 0.0046 1E-07 81.1 10.9 113 499-642 644-758 (1139)
75 PRK15483 type III restriction- 96.8 0.018 3.8E-07 75.5 15.7 159 499-670 90-276 (986)
76 KOG0350 DEAD-box ATP-dependent 96.6 0.0049 1.1E-07 73.6 8.1 96 498-614 215-311 (620)
77 KOG0952 DNA/RNA helicase MER3/ 96.6 0.0078 1.7E-07 77.3 10.1 136 500-667 166-311 (1230)
78 PHA02653 RNA helicase NPH-II; 96.5 0.089 1.9E-06 67.7 19.3 104 499-637 223-332 (675)
79 TIGR01054 rgy reverse gyrase. 96.5 0.0064 1.4E-07 82.5 9.5 88 499-612 122-213 (1171)
80 TIGR02621 cas3_GSU0051 CRISPR- 96.2 0.045 9.8E-07 71.2 13.8 39 599-637 172-216 (844)
81 COG1201 Lhr Lhr-like helicases 95.9 0.04 8.6E-07 71.4 11.6 125 500-654 75-206 (814)
82 PRK09200 preprotein translocas 95.5 0.058 1.2E-06 70.1 10.5 102 499-636 120-226 (790)
83 PRK14701 reverse gyrase; Provi 95.4 0.042 9.1E-07 76.6 9.4 87 500-611 124-213 (1638)
84 PRK09751 putative ATP-dependen 95.1 0.094 2E-06 72.2 11.2 119 499-646 38-177 (1490)
85 TIGR00963 secA preprotein tran 94.8 0.079 1.7E-06 68.0 8.7 89 499-612 98-190 (745)
86 PF11496 HDA2-3: Class II hist 94.3 0.1 2.3E-06 60.7 7.5 126 707-845 4-140 (297)
87 PF13086 AAA_11: AAA domain; P 94.2 0.76 1.7E-05 50.3 13.9 36 598-638 192-228 (236)
88 COG0610 Type I site-specific r 94.0 0.2 4.3E-06 67.3 10.2 114 500-643 305-420 (962)
89 PRK09694 helicase Cas3; Provis 93.4 0.42 9.2E-06 63.3 11.6 76 553-645 411-489 (878)
90 KOG0330 ATP-dependent RNA heli 93.0 0.42 9.1E-06 56.4 9.4 118 500-644 131-252 (476)
91 PRK12899 secA preprotein trans 92.9 0.49 1.1E-05 62.1 10.9 113 500-649 137-253 (970)
92 TIGR01407 dinG_rel DnaQ family 92.9 0.61 1.3E-05 62.3 12.1 42 550-613 414-455 (850)
93 PRK12898 secA preprotein trans 92.5 1.1 2.3E-05 57.5 12.9 116 499-636 145-269 (656)
94 COG1203 CRISPR-associated heli 92.0 0.77 1.7E-05 60.2 11.3 131 499-638 247-382 (733)
95 COG0513 SrmB Superfamily II DN 91.8 0.86 1.9E-05 57.4 10.9 110 501-638 102-217 (513)
96 TIGR01970 DEAH_box_HrpB ATP-de 91.6 0.61 1.3E-05 61.6 9.7 38 891-933 318-355 (819)
97 KOG1513 Nuclear helicase MOP-3 91.5 0.63 1.4E-05 58.8 8.9 150 551-730 367-541 (1300)
98 KOG0338 ATP-dependent RNA heli 91.4 1.4 2.9E-05 53.8 11.3 122 496-647 250-378 (691)
99 PF00628 PHD: PHD-finger; Int 91.0 0.079 1.7E-06 44.9 0.5 30 417-450 4-33 (51)
100 COG1110 Reverse gyrase [DNA re 90.9 0.48 1E-05 61.8 7.3 87 499-610 126-215 (1187)
101 PRK11664 ATP-dependent RNA hel 90.3 1.1 2.3E-05 59.4 10.1 105 499-638 49-161 (812)
102 PRK13104 secA preprotein trans 90.0 0.82 1.8E-05 60.0 8.5 101 500-636 125-229 (896)
103 COG0514 RecQ Superfamily II DN 89.9 0.46 1E-05 59.8 6.0 131 498-655 57-195 (590)
104 KOG0947 Cytoplasmic exosomal R 89.9 0.76 1.7E-05 59.4 7.8 93 509-640 352-447 (1248)
105 COG4098 comFA Superfamily II D 88.5 5.3 0.00012 46.9 12.5 41 598-638 202-245 (441)
106 KOG0335 ATP-dependent RNA heli 87.6 1.7 3.7E-05 53.3 8.4 86 499-611 153-239 (482)
107 PRK13103 secA preprotein trans 86.7 1.5 3.3E-05 57.5 7.8 102 499-636 124-229 (913)
108 COG3587 Restriction endonuclea 86.0 1.9 4.2E-05 55.5 7.9 122 499-635 105-241 (985)
109 KOG1802 RNA helicase nonsense 86.0 1.6 3.4E-05 54.7 7.0 36 498-537 454-490 (935)
110 PRK13107 preprotein translocas 85.7 2.5 5.4E-05 55.7 8.9 112 499-648 124-239 (908)
111 PRK11131 ATP-dependent RNA hel 85.2 4.5 9.8E-05 55.6 11.3 83 1229-1318 1129-1212(1294)
112 KOG0343 RNA Helicase [RNA proc 85.1 1.9 4E-05 53.1 6.9 119 500-646 143-265 (758)
113 COG4581 Superfamily II RNA hel 83.4 5.4 0.00012 53.4 10.7 94 508-635 173-269 (1041)
114 KOG1132 Helicase of the DEAD s 82.6 3.8 8.3E-05 53.1 8.5 24 359-382 42-65 (945)
115 PRK12904 preprotein translocas 82.3 3.3 7.1E-05 54.4 8.0 102 500-637 124-229 (830)
116 KOG0951 RNA helicase BRR2, DEA 81.6 6.6 0.00014 52.8 10.1 114 500-646 366-492 (1674)
117 cd00079 HELICc Helicase superf 81.3 1 2.3E-05 44.6 2.5 82 822-903 28-131 (131)
118 KOG0336 ATP-dependent RNA heli 80.9 5 0.00011 47.8 8.0 107 499-634 295-405 (629)
119 smart00249 PHD PHD zinc finger 80.8 1.1 2.4E-05 36.4 2.0 23 428-450 11-33 (47)
120 PRK14873 primosome assembly pr 79.6 6.1 0.00013 51.3 9.1 107 499-637 189-304 (665)
121 PRK04296 thymidine kinase; Pro 79.6 9.8 0.00021 41.5 9.5 36 598-635 78-114 (190)
122 PF06733 DEAD_2: DEAD_2; Inte 76.6 1.8 3.8E-05 46.4 2.6 45 548-613 115-160 (174)
123 PRK12326 preprotein translocas 75.6 9 0.0002 49.6 8.7 119 499-653 120-243 (764)
124 COG1202 Superfamily II helicas 72.6 10 0.00022 47.3 7.7 124 497-646 260-390 (830)
125 TIGR01967 DEAH_box_HrpA ATP-de 72.2 13 0.00028 51.4 9.5 84 1229-1319 1119-1203(1283)
126 KOG1844 PHD Zn-finger proteins 71.6 1.8 4E-05 54.3 1.4 36 412-450 85-120 (508)
127 PF09848 DUF2075: Uncharacteri 70.9 15 0.00032 44.0 8.8 17 596-612 81-97 (352)
128 KOG1803 DNA helicase [Replicat 69.9 14 0.0003 46.5 8.2 40 594-638 354-393 (649)
129 TIGR00376 DNA helicase, putati 68.5 33 0.00072 44.6 11.7 41 593-638 356-396 (637)
130 COG0556 UvrB Helicase subunit 68.3 7.6 0.00016 48.1 5.4 32 499-530 58-90 (663)
131 KOG1973 Chromatin remodeling p 67.8 2.4 5.3E-05 49.0 1.2 49 411-488 217-268 (274)
132 KOG0345 ATP-dependent RNA heli 66.6 22 0.00048 43.5 8.7 110 500-635 81-197 (567)
133 smart00488 DEXDc2 DEAD-like he 65.6 3.5 7.6E-05 48.1 2.0 44 548-612 207-250 (289)
134 smart00489 DEXDc3 DEAD-like he 65.6 3.5 7.6E-05 48.1 2.0 44 548-612 207-250 (289)
135 PRK12906 secA preprotein trans 64.3 13 0.00029 48.8 6.9 87 499-610 122-212 (796)
136 PF13401 AAA_22: AAA domain; P 62.9 6.2 0.00013 39.4 3.0 35 600-636 89-125 (131)
137 KOG0348 ATP-dependent RNA heli 62.2 22 0.00047 44.2 7.6 93 501-623 214-317 (708)
138 PRK11747 dinG ATP-dependent DN 59.1 6.2 0.00013 51.7 2.7 48 548-614 215-262 (697)
139 PF07517 SecA_DEAD: SecA DEAD- 56.2 56 0.0012 37.8 9.5 87 499-610 119-209 (266)
140 PRK12902 secA preprotein trans 55.7 34 0.00073 45.5 8.3 88 499-611 127-218 (939)
141 PRK14960 DNA polymerase III su 55.0 50 0.0011 42.9 9.5 60 598-657 118-178 (702)
142 KOG0333 U5 snRNP-like RNA heli 54.9 24 0.00051 43.8 6.3 86 500-612 324-410 (673)
143 TIGR03117 cas_csf4 CRISPR-asso 54.7 8.2 0.00018 49.7 2.7 44 550-615 180-223 (636)
144 KOG0926 DEAH-box RNA helicase 53.9 28 0.00061 45.1 6.9 34 553-609 350-383 (1172)
145 PF02562 PhoH: PhoH-like prote 53.7 11 0.00024 41.9 3.1 44 597-642 118-161 (205)
146 KOG0339 ATP-dependent RNA heli 53.6 56 0.0012 40.5 9.0 115 492-635 289-410 (731)
147 COG1198 PriA Primosomal protei 51.3 57 0.0012 42.9 9.3 106 499-637 246-360 (730)
148 PRK10536 hypothetical protein; 50.2 13 0.00029 42.6 3.2 41 599-641 177-217 (262)
149 KOG4284 DEAD box protein [Tran 49.8 60 0.0013 41.4 8.6 121 496-645 91-217 (980)
150 KOG4323 Polycomb-like PHD Zn-f 49.8 6 0.00013 48.4 0.3 54 415-488 171-224 (464)
151 TIGR00604 rad3 DNA repair heli 49.1 9.7 0.00021 50.0 2.2 65 514-613 171-235 (705)
152 TIGR02881 spore_V_K stage V sp 48.9 37 0.00079 38.9 6.6 20 359-378 44-63 (261)
153 KOG0948 Nuclear exosomal RNA h 47.9 34 0.00074 44.2 6.3 68 508-613 183-250 (1041)
154 PRK14964 DNA polymerase III su 47.5 1.4E+02 0.0031 37.6 11.7 40 598-639 116-158 (491)
155 KOG0342 ATP-dependent RNA heli 45.2 45 0.00098 41.2 6.6 110 500-635 156-270 (543)
156 PF02399 Herpes_ori_bp: Origin 45.0 1E+02 0.0023 40.7 10.2 101 499-636 79-190 (824)
157 CHL00122 secA preprotein trans 44.6 50 0.0011 43.9 7.3 88 499-611 118-209 (870)
158 PF07227 DUF1423: Protein of u 44.6 17 0.00038 44.2 3.1 77 413-522 129-208 (446)
159 KOG0347 RNA helicase [RNA proc 44.5 54 0.0012 41.1 7.1 112 500-635 265-385 (731)
160 COG5034 TNG2 Chromatin remodel 41.9 11 0.00025 42.3 1.0 49 410-487 218-269 (271)
161 KOG0351 ATP-dependent DNA heli 41.7 34 0.00074 46.1 5.4 137 496-657 302-451 (941)
162 PRK08074 bifunctional ATP-depe 39.0 18 0.00039 49.0 2.4 44 548-613 427-470 (928)
163 PRK07764 DNA polymerase III su 38.6 81 0.0017 42.3 8.1 20 361-380 41-60 (824)
164 KOG0340 ATP-dependent RNA heli 38.3 1.3E+02 0.0028 36.0 8.7 121 500-644 77-201 (442)
165 PRK07246 bifunctional ATP-depe 38.3 20 0.00043 47.9 2.5 41 549-612 410-450 (820)
166 KOG0353 ATP-dependent DNA heli 37.2 50 0.0011 39.2 5.1 131 498-649 134-273 (695)
167 KOG1805 DNA replication helica 35.4 2.7E+02 0.0058 37.7 11.5 41 593-638 791-831 (1100)
168 TIGR00269 conserved hypothetic 34.2 66 0.0014 31.7 4.9 62 1063-1126 36-101 (104)
169 PF13173 AAA_14: AAA domain 33.8 37 0.0008 34.2 3.2 41 598-639 61-101 (128)
170 PRK12900 secA preprotein trans 33.5 1.2E+02 0.0025 41.2 8.2 98 511-645 196-293 (1025)
171 KOG0328 Predicted ATP-dependen 33.5 2.7E+02 0.0058 32.6 9.8 125 499-655 96-225 (400)
172 PRK12901 secA preprotein trans 31.6 1E+02 0.0023 41.8 7.3 101 511-647 227-327 (1112)
173 KOG0949 Predicted helicase, DE 31.5 86 0.0019 41.9 6.3 142 477-649 538-682 (1330)
174 KOG1133 Helicase of the DEAD s 31.3 21 0.00046 45.6 1.0 57 525-614 308-364 (821)
175 PHA00673 acetyltransferase dom 29.5 78 0.0017 33.7 4.7 45 598-642 87-134 (154)
176 PRK14965 DNA polymerase III su 29.5 1.5E+02 0.0032 38.3 8.1 20 361-380 42-61 (576)
177 KOG3259 Peptidyl-prolyl cis-tr 28.7 41 0.00088 35.1 2.3 59 322-383 8-66 (163)
178 PLN03025 replication factor C 27.2 87 0.0019 37.0 5.2 60 598-657 99-159 (319)
179 PRK07940 DNA polymerase III su 26.1 1.2E+02 0.0025 37.2 6.1 22 359-380 38-59 (394)
180 PRK06647 DNA polymerase III su 25.9 2.4E+02 0.0052 36.3 9.0 20 361-380 42-61 (563)
181 TIGR02880 cbbX_cfxQ probable R 25.8 91 0.002 36.3 5.0 20 359-378 60-79 (284)
182 PRK12903 secA preprotein trans 25.8 1.7E+02 0.0037 39.2 7.7 86 500-610 121-210 (925)
183 PF05876 Terminase_GpA: Phage 25.1 2.3E+02 0.005 36.4 8.7 56 592-647 128-190 (557)
184 PRK14971 DNA polymerase III su 25.0 4.8E+02 0.01 34.0 11.6 59 598-658 121-182 (614)
185 PF08824 Serine_rich: Serine r 24.9 1.2E+02 0.0027 32.4 5.2 119 990-1111 4-134 (159)
186 COG1702 PhoH Phosphate starvat 24.4 35 0.00076 40.6 1.2 40 599-641 244-284 (348)
187 KOG0344 ATP-dependent RNA heli 24.4 1.1E+02 0.0024 38.7 5.5 90 500-613 211-303 (593)
188 TIGR00631 uvrb excinuclease AB 23.8 1.3E+02 0.0028 39.4 6.2 24 499-522 55-79 (655)
189 PRK07003 DNA polymerase III su 23.4 94 0.002 41.1 4.7 59 597-657 118-179 (830)
190 KOG0337 ATP-dependent RNA heli 23.4 1.1E+02 0.0023 37.5 4.8 106 499-636 91-205 (529)
191 PF13604 AAA_30: AAA domain; P 22.7 99 0.0021 33.9 4.2 39 598-638 93-132 (196)
192 PF12387 Peptidase_C74: Pestiv 22.1 81 0.0018 33.7 3.1 65 1060-1124 103-182 (200)
193 PF13177 DNA_pol3_delta2: DNA 21.7 7.3E+02 0.016 26.2 10.4 21 361-381 23-43 (162)
194 CHL00181 cbbX CbbX; Provisiona 21.5 1.3E+02 0.0029 35.0 5.2 18 361-378 63-80 (287)
195 COG1875 NYN ribonuclease and A 21.2 69 0.0015 38.5 2.7 40 598-639 351-390 (436)
196 TIGR00595 priA primosomal prot 20.3 1.9E+02 0.0042 36.6 6.6 51 509-561 270-321 (505)
No 1
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=100.00 E-value=1.2e-95 Score=897.30 Aligned_cols=1099 Identities=26% Similarity=0.273 Sum_probs=841.3
Q ss_pred CCCCCeEEEEcCcccccc--CCCchhhhhhccccccccc---cceeeecccccccceEEEEEEccccccccceeccCccc
Q 000739 45 DVDHPFFVEVNRTCWLLD--EHLDISEIVLTDLKLREEF---SGFIISEDFYQVSRYTLRLHVCHVNEFIGRIKLGHWPL 119 (1322)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (1322)
+++.|+.++.+-+...+. +..+..++|++.++..+.+ +++..+-+..++..+ +|+.|++.+||.+++.||||+
T Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~vit~~s~l~r~~~~~t~t~~~~~~~~~~~--~~~~~~~~n~v~~~~~~~~~~ 80 (1394)
T KOG0298|consen 3 KKYPLDESMSEDEEYIETWKDLPKNRVIVITKRSPLVRGVLLRTITSHFQIPAAQYG--TLLAYVSDNVVRFYAETYRRN 80 (1394)
T ss_pred CccchhhhhhhhHHHHHHHHhcCCCceEEEecCChhhhcceeeEEeecccchhhhcc--eeEeecchhHHHHHHhhhccc
Confidence 345566666655443332 4788999999999988776 555555555555555 999999999999999999999
Q ss_pred ccCCCchHHHHHhhhccccceeeEEEecccCCCCccchhhHhhhhcceEEEeecCCCCcccccccceeeEEeccchhhhh
Q 000739 120 LSSNDVTLEFVEKCMEEEMETCKIMLSGSFDAPDEGITGLVHLASMEFLTLRPTLGITFSEDMSSLRVRVEILKSAFDAC 199 (1322)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~lr~~~~~~~~~~~~~~~~~v~vl~~~~~~~ 199 (1322)
.|+.|++.+++....+-+ +.+...++-+|.++.++.++.++...+.+++++-+.+ ........+++.-+...++.|
T Consensus 81 ~s~~d~~~~~~~~k~~~~-~~~es~~~~~~~~~~~~~s~~~~~~~~~~l~~ic~~~---Nq~r~t~~l~~~ki~~s~~s~ 156 (1394)
T KOG0298|consen 81 NSPMDGTVLCEDNKEVPP-ESPESPTLFSYGKKREVFSDNAVEHKGIELILICIPK---NQNRRTRYLKVRKIRQSSGSC 156 (1394)
T ss_pred CCccccceeeccccccCC-CCCCcchHHHhcccccccchHHHHhhcchhhhhcccc---cccccchhhhHHHHhccchhh
Confidence 999999999987766666 7888999999999999999999999999887764332 234455688888889999999
Q ss_pred hhhhhcchHHHHHHHHHHHhhcCCCcCCcccccccccccchhhhcccccccCccccccCCCCCHHHHHHHhccCCCCCCc
Q 000739 200 ESLLENSRKTWKKSMINVMSWLRPEVLTSEARYGVSKSMEMDVELMTRTKNDVSASQKHASFDVARFYEAIKRSKAEPML 279 (1322)
Q Consensus 200 ~~l~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~y~~i~~~~~~~~~ 279 (1322)
...+.++.+-|++.|...|.|.++..+++...|+...+... ....-....+-........+|-..++..+.+.......
T Consensus 157 ~~~lt~t~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~d-~e~~~~l~~~~k~t~~n~~~d~~~~~~~i~~l~~s~~~ 235 (1394)
T KOG0298|consen 157 ILVLTNTQTHVRKRLIREMIVGLQKLTLFFKDFPGSFEFKD-AEQEKVLKFELKTTSTNKLFDALYEKHRITVLVESERS 235 (1394)
T ss_pred hHhhhhhhhhHHHHHHHHHHhcccccccccccCCceeeech-HHHHHHHhhhhhhhhhhhhhhhHHhhhhccccchhccC
Confidence 99999999999999999999999999888776664322111 00001111111122234456666666665554433222
Q ss_pred cCCCCCccCCChHHHHHHHHHHHHcccCCCC------CCchhhhccccCCCCCcccccCccccceeccCCCcccCCCCCC
Q 000739 280 EEDLPDLLPLLRPYQRRAAYWMVQREKGDSA------SSSERERSQFFSPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYT 353 (1322)
Q Consensus 280 ~~~~p~L~~~LrPyQ~~aV~WMl~RE~~~~~------~~~~~~~~~~~~plw~~~~~~d~~~~~yyn~~tG~is~~~~~~ 353 (1322)
...+....+++|+||.+++.||.+|+..-.. ........+..-++-.++.+.+-+..++ .
T Consensus 236 ~D~~~~~~~~~r~~~~r~~~~~~~~~~e~~~~s~~~It~~~~~di~~~~~~~l~~~~~~~~~~l~--------------~ 301 (1394)
T KOG0298|consen 236 LDLIKRFQSQLRKYQQRTVSWMPSREQEYTQVSANFITLHLIDDITRVFKLKLCFQFYSFEEELP--------------K 301 (1394)
T ss_pred chHHHHhhhhccHHHHHHHHhccccchhhhhccccccccccccchHHHhhhccceecccccccch--------------h
Confidence 2334557899999999999999999984321 0011111111111111111111111111 1
Q ss_pred CCCcccceeecCCCccHHHHHHHHHHHhcCCCCCCccccccccccchhhhhHHHHhhhhhhhhhcccccccccccccccc
Q 000739 354 SSYVFGGILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQKVNLRRLKRERVECICGAVSESRKYKGLWVQ 433 (1322)
Q Consensus 354 ~~~vrGGILADEMGLGKTvq~LALIl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~c~c~~~~~~~~~~g~~v~ 433 (1322)
.+...||.+|||||||||++-+|++..|+.+... ++........|.|+...+...+.+.|++
T Consensus 302 e~l~~~~t~~de~gl~k~~E~~a~~~~n~~p~~~------------------~~~s~~~~~~~~~~~~~e~~~~r~nq~~ 363 (1394)
T KOG0298|consen 302 ESLSPGGTLADEMGLGKTVEFLAMLTSNRRPPDS------------------YRNSYLHQRLEEYSDEVELKRSRINQKD 363 (1394)
T ss_pred ccCCCcchHHHHhhhHHHHHHHHHHhccCCCccc------------------ccchHHHHHHHHHhhhhHhHHhHhhhhh
Confidence 2334589999999999999999999999877422 2334445677888888888888888999
Q ss_pred ccccccccccc-------ccCcCCCCCcccchhhhhhhcccccccccccccCcccccchhhhhhccCCCCCCCcEEEEeC
Q 000739 434 CDICDAWQHAD-------CVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELIEATDSPVATGATLIVCP 506 (1322)
Q Consensus 434 c~~c~~w~h~~-------cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~~~~~~~~~~~~tLIV~P 506 (1322)
|..|..|+++. |-|....-. -.+........+.|..|++.......+..+|+||||||
T Consensus 364 ~~~~~~~~~~g~~~~~ade~~~qk~~~---------------~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P 428 (1394)
T KOG0298|consen 364 EVLCSGDKKHGKRVQCADEMGWQKTSE---------------KLILELSDLPKLCPSCCSELVKEGENLVETGATLIICP 428 (1394)
T ss_pred HHhhcCCccCCcceeehhhhhccchHH---------------HHHHHHhcccccchhhhhHHHhcccceeecCceEEECc
Confidence 98888887764 222111000 00112233455667777777777888899999999999
Q ss_pred CchhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccchhhhhhccc
Q 000739 507 APILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKR 586 (1322)
Q Consensus 507 ~SLl~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~~~~r~~kr 586 (1322)
.+++.||..||.+|+++ .++|+.|.|.++.... .+..+..||||+|||++|+.++.|. ...++.|.+|++++
T Consensus 429 ~aIl~QW~~EI~kH~~~-~lKv~~Y~Girk~~~~-----~~~el~~yDIVlTtYdiLr~El~ht--e~~~~~R~lR~qsr 500 (1394)
T KOG0298|consen 429 NAILMQWFEEIHKHISS-LLKVLLYFGIRKTFWL-----SPFELLQYDIVLTTYDILRNELYHT--EDFGSDRQLRHQSR 500 (1394)
T ss_pred HHHHHHHHHHHHHhccc-cceEEEEechhhhccc-----CchhhhccCEEEeehHHHHhHhhcc--cccCChhhhhcccC
Confidence 99999999999999985 4799999999876542 5588899999999999999999875 56788999999999
Q ss_pred CCCcchhccccceeeeeccCccccCCchHHHHHHHHHhccceEEEEeccCCCCChhhhHhhhhccCCCCCCChhHHHHHH
Q 000739 587 YPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVI 666 (1322)
Q Consensus 587 y~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f~~~~~F~~~~ 666 (1322)
|+.+++||..+.|||||||||||+....|.+++|+.+|++.||||+||||||+ ++|||+||.||+..||+...+|.+.+
T Consensus 501 ~~~~~SPL~~v~wWRIclDEaQMvesssS~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v 579 (1394)
T KOG0298|consen 501 YMRPNSPLLMVNWWRICLDEAQMVESSSSAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTV 579 (1394)
T ss_pred CCCCCCchHHHHHHHHhhhHHHhhcchHHHHHHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred cCCCCCCccchHHHHHHHhhhhheecccccccccCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000739 667 RDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNIL 746 (1322)
Q Consensus 667 ~~p~~~g~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~a~~~~~~~~~~~~ 746 (1322)
..++... .....+..++...++|+.|.+|..++.+||+.+.++++.+++.|-++|+..+..|..++...+..++++.+
T Consensus 580 ~~~~~~r--a~~~~~~dl~~q~l~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l 657 (1394)
T KOG0298|consen 580 DKAYQLR--AKCEPLLDLFKQLLWRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNL 657 (1394)
T ss_pred HHHHHHH--hhhhhHHHHHHhhhhhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhcc
Confidence 8877654 44567889999999999999999999999999999999999999999999999999999988888776654
Q ss_pred hccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHccCCcCCCcccccccCCCCCHHHHHHHHHHHHHHhhhhhcchhh
Q 000739 747 KRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLV 826 (1322)
Q Consensus 747 ~r~~~g~~~~~~~~~~~l~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~~~~t~eelL~~Ll~~~~~e~~e~~rkvL 826 (1322)
.. ..+.+.+++...+.++.+|++|||+||||+++.+.+.+.... +++|+|..|+.+...++.+..|...
T Consensus 658 ~~---------~sd~~~l~~~~~a~i~~~l~rLRq~Cchplv~~~~ls~~k~~--s~~DiL~~lle~~ed~~~~~~R~~~ 726 (1394)
T KOG0298|consen 658 DN---------SSDLASLSPQLLAIILKWLLRLRQACCHPLVGNSNLSSTKYL--SIQDILARLLENTEDECKTELRTLA 726 (1394)
T ss_pred cc---------ccccccCChhhHHHHHHHHHHHHHhhcccccccCCcchhcCC--CHHHHHHHHHHhcchhhhHHHHHHH
Confidence 21 222344566778899999999999999999999888776554 9999999999999999999999999
Q ss_pred hhhhhHhHHHHHHHhHhH----HHHHHHHHHHHHHHHhhhcc-CCCCcceeeEecCCCCChhhhhhhhhhhccCCCCceE
Q 000739 827 MALNGLAGIALIEKNLSQ----AVSLYKEAMAVVEEHSEDFR-LDPLLNIHLHHNLTEILPMVANCATELSQNEQHFPGC 901 (1322)
Q Consensus 827 ifsq~la~L~ile~~l~~----a~~~y~~~l~~~~e~~~~f~-~D~~~~l~~~~nl~dwNp~~d~QA~d~hRIGQ~k~V~ 901 (1322)
..+++++.+..+.+++.. ....|+..+....+...+.. .|.....|-.+++. |+.+
T Consensus 727 ~~~~~~a~i~~~~n~f~~~~l~i~k~y~~~~nl~~~~~~~~~~~d~d~h~~ei~~~~--------~~~~----------- 787 (1394)
T KOG0298|consen 727 SSKNGLAAIYFEKNDFPGGILQIIKYYRLKLNLANEPNEQNISVDSDLHIHEIYNLL--------QASS----------- 787 (1394)
T ss_pred HHhhhhHHHHHHHhcCchhHHHHHHHhccccccCCCchhcccccchhhHHHHHhhhh--------cccc-----------
Confidence 999999999999998875 34455555443322222111 22222223333322 1110
Q ss_pred EEEcccCCcccccchhHhhhhccccccCCCCCCCCCCCCCCCccccCCCCCCCCCCcCCCCCCCChhhHHHHHHHHHHHH
Q 000739 902 SEKAFKIHSIETCDENARKCQRVSREENSDFTDAEDPSGHLSDLSENGFNGDRKSDCCVSSSSFDDASLITVCENLKQKY 981 (1322)
Q Consensus 902 VyRlit~~TiEE~i~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~l~~~Y 981 (1322)
+-+-+......++++.-.... .-++..+.|.+ -.+.--|..++++|
T Consensus 788 -------~~~sd~~~~~~~~~~~~~~~s---------------~~~~~~~~d~~------------~~~~~~~q~~~~kl 833 (1394)
T KOG0298|consen 788 -------LAPSDRKLTELEHKKYQAQMS---------------RLEWKYLEDET------------RVLYSLLQDLNEKL 833 (1394)
T ss_pred -------ccchhhhHHHHHHHhhhhhhc---------------cccchhhchhh------------HHHHHHHHHHHHHH
Confidence 000000011111111111100 00111112211 13666789999999
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHhhhcccccChhHHHHHHHhhcCCcchHHHHHHHHHHhhccccccccccccccccC
Q 000739 982 LSGFSVKLSVAQQEFRKSYMQVCNALDDREKQYSAWWLEALHHAEGNKDFSAELIRKIEEAISGSLNKSRALRTASRYRS 1061 (1322)
Q Consensus 982 l~~~~~~~~~a~~~~~~~~~~v~~~~~~~~~~~~~Ww~~~l~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 1061 (1322)
++.+..+...++.+|...+.++.+.++.++.....||++.....+.+.++..+|- .|+.+++.
T Consensus 834 ~s~~~~~~t~~~~e~~~~~~~~~~v~s~m~~k~~~~v~~~~~lqe~~~~~~~eLr-----------------ai~~~~~~ 896 (1394)
T KOG0298|consen 834 ESVSILKKTFELEEFDLLATNMVNVKSSMGDKIWNKVRDDRLLQEINVEFLEELR-----------------AIAFRARF 896 (1394)
T ss_pred HHHHhhhhhhhHHHHHHHhhhhhhhhccccchhHHHHHhhhHHHHHHHHHHHHHH-----------------HHHhhhhc
Confidence 9999999999999999999999999999999999999999999999887766665 26668999
Q ss_pred ccchHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhcccccccccCCCCCccccccccchHHHHHHhhccccc
Q 000739 1062 ISGLTYHIQSSLDQLEASRKTLLDRLLEIDQTMEKPKEEDMDRMRHCRICYGVGDGPICVHCELDESFQDYEARLFRLKK 1141 (1322)
Q Consensus 1062 ~~gL~~~L~~~ld~L~~~R~~l~~~l~~l~~~~~~p~~~~ve~~~~C~~C~~~~~~~~C~~C~~~~~f~~yE~~LF~~~~ 1141 (1322)
+.+++..|++...+|..+++.+..+++++++.++.+...+..+...|-.|-...-++.|.+|.+|..+..|+++.|+.+.
T Consensus 897 i~i~~l~L~~~~~~l~~s~~e~~~~~~~i~~~Ie~~~~~~~n~~~i~d~~~k~~~~h~~~~~~~d~~~~i~~~r~~~~~~ 976 (1394)
T KOG0298|consen 897 IHIMKLKLQNLKSDLIASFEEVKGVMQEICEAIETGGALVLNRMEIIDFIEKVTVCHLTDIEDYDKDKPIKPKRHRRCRL 976 (1394)
T ss_pred cccchhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHhccCCCcchHhhcccccccccchhhhhhh
Confidence 99999999999999999999999999999999999999988888888888877778889999999999999999988665
Q ss_pred cCCCc---cchHHHHHHHhhhccccccccccCCCCCCCCCCCCchhhhhccccccceeeccCCchHHHHHHHHHHH-Hhh
Q 000739 1142 SQGDI---ASAEEAVDLQKKNSSLNRFYWYLSQPNKNSTSSSVGNEEIKRRDVRETVVVSKSPSELEVILGVIKNY-CKT 1217 (1322)
Q Consensus 1142 ~~~g~---~s~e~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Se~E~vLk~i~~~-~k~ 1217 (1322)
..++- +-+++-+.+|.+.+.++-+.-++++ -.-..-|.|..+ .+.
T Consensus 977 ~~~~~~~i~~~ce~~~~q~k~~~~~s~~~~l~~-------------------------------~~~~~ekSi~~~~~~~ 1025 (1394)
T KOG0298|consen 977 CLRRKSLILFECELFALQPKEDATVSESLELSS-------------------------------MEKSFEKSIIAFLRKK 1025 (1394)
T ss_pred hhhhhHHHHHHHHHHhcCccccchhhhhhccch-------------------------------hhhcchhhHHHHHHHH
Confidence 43332 5566667776555444433222221 111112334444 455
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhcccccCCCCCcccccCccccchhhhhchhh
Q 000739 1218 QLGREAISASSKQLHILEAMRKEYANARSLATAQAQFLRAHDEIRMATTRLHLKEDDNDTSVDALSPDELASASVTNSSE 1297 (1322)
Q Consensus 1218 ~~~~~~~~~~~~hl~lle~mrkEf~~~r~l~~a~~~~l~A~DEL~Mat~Rlrlr~~~e~~~~~~i~~~Ev~~~~~~~~~e 1297 (1322)
++.+++..+|+.||++|+.|+.++...++||..+.|.+.|+||++|+++||.|++..|..++|.|+.++++.+.+-.+++
T Consensus 1026 ~l~~e~~~~~t~~~~~l~~lqnt~~~~~~~~~~~qq~~~~~~~~~~~~m~l~lkd~~~~~~~y~i~~~qld~~~~~nt~s 1105 (1394)
T KOG0298|consen 1026 QLFSEWKEEATPLLELLSCLQNTYKFRIEYWIEVQQMVDALDELEMSKMRLYLKDDEEEQSIYRILACQLDEQSQLNTYS 1105 (1394)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhheeeecCcHHHHHHHHHHHhhHHHHHHHhHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHhhccccccccccc
Q 000739 1298 KFISMTLLSQVKGKLRYLKVSTE 1320 (1322)
Q Consensus 1298 k~~a~~~l~r~~gqL~YL~~l~~ 1320 (1322)
++++...+..+.|-+|||++|.+
T Consensus 1106 ~~~~q~~~ls~~G~~r~lk~l~e 1128 (1394)
T KOG0298|consen 1106 LQTSQLSFLSIPGLLRYLKGLKE 1128 (1394)
T ss_pred HHHhhhhhhccchHHHHHHHHHH
Confidence 99999999999999999999975
No 2
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=2.8e-81 Score=737.81 Aligned_cols=365 Identities=22% Similarity=0.331 Sum_probs=307.5
Q ss_pred CCcEEEEeCCchhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccc
Q 000739 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1322)
Q Consensus 498 ~~~tLIV~P~SLl~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1322)
.||+||+||.|++.||.+||.+|+| ++++++|+|.+..+....+ ....-..+||+||||++..++-
T Consensus 217 ~GPfLVi~P~StL~NW~~Ef~rf~P--~l~~~~~~Gdk~eR~~~~r--~~~~~~~fdV~iTsYEi~i~dk---------- 282 (971)
T KOG0385|consen 217 PGPFLVIAPKSTLDNWMNEFKRFTP--SLNVVVYHGDKEERAALRR--DIMLPGRFDVCITSYEIAIKDK---------- 282 (971)
T ss_pred CCCeEEEeeHhhHHHHHHHHHHhCC--CcceEEEeCCHHHHHHHHH--HhhccCCCceEeehHHHHHhhH----------
Confidence 4899999999999999999999998 9999999999876532211 2222348999999999999873
Q ss_pred hhhhhhcccCCCcchhccccceeeeeccCccccCCchHHHHHHHHHhccceEEEEeccCCCCChhhhHhhhhccCCCCCC
Q 000739 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS 657 (1322)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f~ 657 (1322)
+.|.++.|.++|+||||+|||.+|.+++.++.+.+.+|++|||||+||||.|||+||+||.|+.|+
T Consensus 283 --------------~~lk~~~W~ylvIDEaHRiKN~~s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~ 348 (971)
T KOG0385|consen 283 --------------SFLKKFNWRYLVIDEAHRIKNEKSKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFN 348 (971)
T ss_pred --------------HHHhcCCceEEEechhhhhcchhhHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhcc
Confidence 579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHcCCCCCCccchHHHHHHHhhhhheecccccccccCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHH
Q 000739 658 ISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREV 737 (1322)
Q Consensus 658 ~~~~F~~~~~~p~~~g~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~a~~~ 737 (1322)
+...|..+|......++.+.+.+|+.+++||+|||.|.+|... |||+++.+++|.||+.|+++|.+++.+-....
T Consensus 349 ~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~s--LppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~--- 423 (971)
T KOG0385|consen 349 SAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKS--LPPKKELIIYVGMSSMQKKWYKAILMKDLDAL--- 423 (971)
T ss_pred CHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhc--CCCcceeeEeccchHHHHHHHHHHHHhcchhh---
Confidence 9999999998877778888999999999999999999999655 99999999999999999999999865422111
Q ss_pred HHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHccCCcCCCcccccccCCCCCHHH----------HH
Q 000739 738 IQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDE----------IL 807 (1322)
Q Consensus 738 ~~~~~~~~~~r~~~g~~~~~~~~~~~l~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~~~~t~ee----------lL 807 (1322)
+ +. ...+...+++.+|+||+|||||+|+.+.. ++.+.+.++ +|
T Consensus 424 --------n-----------~~-----~~~~k~kL~NI~mQLRKccnHPYLF~g~e---Pg~pyttdehLv~nSGKm~vL 476 (971)
T KOG0385|consen 424 --------N-----------GE-----GKGEKTKLQNIMMQLRKCCNHPYLFDGAE---PGPPYTTDEHLVTNSGKMLVL 476 (971)
T ss_pred --------c-----------cc-----ccchhhHHHHHHHHHHHhcCCccccCCCC---CCCCCCcchHHHhcCcceehH
Confidence 0 00 01135789999999999999999988732 223444333 67
Q ss_pred HHHHHHHHHhhhhhcchhhhhhhhHhHHHHHHHhHhHHHHHHHHHHH-----HHHHHhhhccCCCCc---ce------ee
Q 000739 808 MVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMA-----VVEEHSEDFRLDPLL---NI------HL 873 (1322)
Q Consensus 808 ~~Ll~~~~~e~~e~~rkvLifsq~la~L~ile~~l~~a~~~y~~~l~-----~~~e~~~~f~~D~~~---~l------~~ 873 (1322)
++|+.+++.+| |+||||||++.|||||+++.......|-...+ .+...++.|+.++.- ++ ++
T Consensus 477 DkLL~~Lk~~G----hRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGL 552 (971)
T KOG0385|consen 477 DKLLPKLKEQG----HRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGL 552 (971)
T ss_pred HHHHHHHHhCC----CeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccccc
Confidence 77777777666 99999999999999999988777666654443 667778889888742 22 56
Q ss_pred EecCC----------CCChhhhhhhhh-hhccCCCCceEEEEcccCCcccccchhHhhhhcccc
Q 000739 874 HHNLT----------EILPMVANCATE-LSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSR 926 (1322)
Q Consensus 874 ~~nl~----------dwNp~~d~QA~d-~hRIGQ~k~V~VyRlit~~TiEE~i~~~~k~~~~~~ 926 (1322)
|.||+ ||||++|.||+| ||||||+|+|.||||||++||||+|++.+-+|.-.+
T Consensus 553 GINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL~Ld 616 (971)
T KOG0385|consen 553 GINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKLRLD 616 (971)
T ss_pred ccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHhchh
Confidence 77776 899999999999 999999999999999999999999999988775444
No 3
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.3e-75 Score=694.23 Aligned_cols=365 Identities=21% Similarity=0.298 Sum_probs=296.7
Q ss_pred CcEEEEeCCchhHHHHHHHHhcCCCCCCeEEEEcCCCccccc-cc-------ccchhhhccCcCEEEEehHHHhhhcccC
Q 000739 499 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLS-DT-------SIMDISELVGADIVLTTYDVLKEDLSHD 570 (1322)
Q Consensus 499 ~~tLIV~P~SLl~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~-~~-------~~~~~~~l~~~DVVITTYe~L~~d~~~~ 570 (1322)
+|+|||||++|+.||.+|+.+|+| .++|.+|||....... .. ............|+||||+.++..-
T Consensus 256 ~paLIVCP~Tii~qW~~E~~~w~p--~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~--- 330 (923)
T KOG0387|consen 256 KPALIVCPATIIHQWMKEFQTWWP--PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQG--- 330 (923)
T ss_pred CceEEEccHHHHHHHHHHHHHhCc--ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccC---
Confidence 799999999999999999999998 8999999998653110 00 0011223345679999999998753
Q ss_pred CCCCccchhhhhhcccCCCcchhccccceeeeeccCccccCCchHHHHHHHHHhccceEEEEeccCCCCChhhhHhhhhc
Q 000739 571 SDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRF 650 (1322)
Q Consensus 571 ~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~F 650 (1322)
..+..+.|++|||||||+|||++|+.+.+|++|++.+|++||||||||+|.|||+|++|
T Consensus 331 ---------------------d~l~~~~W~y~ILDEGH~IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDF 389 (923)
T KOG0387|consen 331 ---------------------DDLLGILWDYVILDEGHRIRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDF 389 (923)
T ss_pred ---------------------cccccccccEEEecCcccccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhh
Confidence 25889999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCChhHHHHHHcCCCCCCcc------------chHHHHHHHhhhhheecccccccccCCCCCCeEEEEEecCCHH
Q 000739 651 LKSSPFSISRWWIEVIRDPYENGDV------------GAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPI 718 (1322)
Q Consensus 651 L~p~~f~~~~~F~~~~~~p~~~g~~------------~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~ 718 (1322)
+.|+.+|+...|.+.|..||..|.. ...-.|+.+++||+|||+|+||.. +.||.|.+.|++|.||+.
T Consensus 390 v~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~-~~Lp~K~E~VlfC~LT~~ 468 (923)
T KOG0387|consen 390 VFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKG-LKLPKKEEIVLFCRLTKL 468 (923)
T ss_pred ccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh-ccCCCccceEEEEeccHH
Confidence 9999999999999999999988653 233478999999999999999987 679999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHccCCcCCCcccccccC
Q 000739 719 EEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQ 798 (1322)
Q Consensus 719 Qr~lY~~l~e~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~l~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~ 798 (1322)
|+.+|+++.+. .++ ..+.+ . ...+|..|..||++||||.|..+.......
T Consensus 469 QR~~Y~~fl~s--~~v----~~i~n----g--------------------~~~~l~Gi~iLrkICnHPdll~~~~~~~~~ 518 (923)
T KOG0387|consen 469 QRRLYQRFLNS--SEV----NKILN----G--------------------KRNCLSGIDILRKICNHPDLLDRRDEDEKQ 518 (923)
T ss_pred HHHHHHHHhhh--HHH----HHHHc----C--------------------CccceechHHHHhhcCCcccccCccccccc
Confidence 99999998753 111 11111 1 124677888999999999998764211111
Q ss_pred CC---C-----CHHHHHHHHHHHHHHhhhhhcchhhhhhhhHhHHHHHHHhHhH-HHHHHHH-----HHHHHHHHhhhcc
Q 000739 799 SP---L-----SMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQ-AVSLYKE-----AMAVVEEHSEDFR 864 (1322)
Q Consensus 799 ~~---~-----t~eelL~~Ll~~~~~e~~e~~rkvLifsq~la~L~ile~~l~~-a~~~y~~-----~l~~~~e~~~~f~ 864 (1322)
++ . -.-+++..|+..+..++ +++|+|+|...||+|||..+.. ....|.. ....++..+++|+
T Consensus 519 ~~D~~g~~k~sGKm~vl~~ll~~W~kqg----~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fn 594 (923)
T KOG0387|consen 519 GPDYEGDPKRSGKMKVLAKLLKDWKKQG----DRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFN 594 (923)
T ss_pred CCCcCCChhhcchHHHHHHHHHHHhhCC----CEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhc
Confidence 11 1 12367888888777776 8999999999999999988874 3334433 3348899999999
Q ss_pred CCCCcce--------eeEecCC----------CCChhhhhhhhh-hhccCCCCceEEEEcccCCcccccchhHhhhhcc
Q 000739 865 LDPLLNI--------HLHHNLT----------EILPMVANCATE-LSQNEQHFPGCSEKAFKIHSIETCDENARKCQRV 924 (1322)
Q Consensus 865 ~D~~~~l--------~~~~nl~----------dwNp~~d~QA~d-~hRIGQ~k~V~VyRlit~~TiEE~i~~~~k~~~~ 924 (1322)
.|...++ +.+.||+ ||||..|+||.+ ||||||+|+|.||||+|+|||||+|+..|=-|--
T Consensus 595 e~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~Kq~ 673 (923)
T KOG0387|consen 595 EDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIFKQF 673 (923)
T ss_pred CCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHHHHH
Confidence 9887554 5567777 899999999999 9999999999999999999999999887755433
No 4
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=3.9e-75 Score=708.78 Aligned_cols=372 Identities=23% Similarity=0.337 Sum_probs=306.1
Q ss_pred CCcEEEEeCCchhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccc
Q 000739 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1322)
Q Consensus 498 ~~~tLIV~P~SLl~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1322)
..|.|||||++|..+|+.|+.+|+| .++|..|.|....+.. ......+++|+||||+++++|+.
T Consensus 1031 ~~PSLIVCPsTLtGHW~~E~~kf~p--fL~v~~yvg~p~~r~~-----lR~q~~~~~iiVtSYDv~RnD~d--------- 1094 (1549)
T KOG0392|consen 1031 RLPSLIVCPSTLTGHWKSEVKKFFP--FLKVLQYVGPPAERRE-----LRDQYKNANIIVTSYDVVRNDVD--------- 1094 (1549)
T ss_pred cCCeEEECCchhhhHHHHHHHHhcc--hhhhhhhcCChHHHHH-----HHhhccccceEEeeHHHHHHHHH---------
Confidence 3589999999999999999999998 7999999998766532 34556778999999999999975
Q ss_pred hhhhhhcccCCCcchhccccceeeeeccCccccCCchHHHHHHHHHhccceEEEEeccCCCCChhhhHhhhhccCCCCCC
Q 000739 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS 657 (1322)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f~ 657 (1322)
.|.++.|.++||||||.|||..++++++++.|++.||++||||||||++.|||+||+||+|+++|
T Consensus 1095 ---------------~l~~~~wNYcVLDEGHVikN~ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLG 1159 (1549)
T KOG0392|consen 1095 ---------------YLIKIDWNYCVLDEGHVIKNSKTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLG 1159 (1549)
T ss_pred ---------------HHHhcccceEEecCcceecchHHHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccC
Confidence 58999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHcCCCCCCc------------cchHHHHHHHhhhhheecccccccccCCCCCCeEEEEEecCCHHHHHHHHH
Q 000739 658 ISRWWIEVIRDPYENGD------------VGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQS 725 (1322)
Q Consensus 658 ~~~~F~~~~~~p~~~g~------------~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~ 725 (1322)
+.+.|.+.|..|+.... ..+++.||+.+-|||+||+|+||..+ ||||..+.++|+|||.|+++|+.
T Consensus 1160 tEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRlKedVL~D--LPpKIIQDyyCeLs~lQ~kLY~d 1237 (1549)
T KOG0392|consen 1160 TEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRLKEDVLKD--LPPKIIQDYYCELSPLQKKLYRD 1237 (1549)
T ss_pred cHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhh--CChhhhhheeeccCHHHHHHHHH
Confidence 99999999999996521 25678999999999999999999887 99999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHccCCcCCCccccc----c-----
Q 000739 726 QHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRS----L----- 796 (1322)
Q Consensus 726 l~e~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~l~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~----l----- 796 (1322)
+.++...... +..+ + . .....+ ...+|++.|..||+.|+||.|+.....+ +
T Consensus 1238 f~~~~k~~~~----~~~d--------~----~--~~S~gt--~~~HvFqaLqYlrKLcnHpaLvlt~~hp~la~i~~~l~ 1297 (1549)
T KOG0392|consen 1238 FVKKAKQCVS----SQID--------G----G--EESLGT--DKTHVFQALQYLRKLCNHPALVLTPVHPDLAAIVSHLA 1297 (1549)
T ss_pred HHHHhccccc----cccc--------c----c--hhccCc--chHHHHHHHHHHHHhcCCcceeeCCCcchHHHHHHHHH
Confidence 8765221111 1000 0 0 000111 2689999999999999999997653211 0
Q ss_pred ---------cCCCCCHHHHHHHHHHHHHHhhh----------hhcchhhhhhhhHhHHHHHHHhHhHHHH-H--HHHHH-
Q 000739 797 ---------QQSPLSMDEILMVLIGKTKIEGE----------EALRKLVMALNGLAGIALIEKNLSQAVS-L--YKEAM- 853 (1322)
Q Consensus 797 ---------~~~~~t~eelL~~Ll~~~~~e~~----------e~~rkvLifsq~la~L~ile~~l~~a~~-~--y~~~l- 853 (1322)
..++ .-..|..|+..|...-. -.+|++|||+|+..||+++++++-++-. . |-...
T Consensus 1298 ~~~~~LHdi~hsp--Kl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDG 1375 (1549)
T KOG0392|consen 1298 HFNSSLHDIQHSP--KLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDG 1375 (1549)
T ss_pred HhhhhHHHhhhch--hHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecC
Confidence 1111 12356666666543311 2689999999999999999999877622 1 22222
Q ss_pred ----HHHHHHhhhccCCCCcce--------eeEecCC----------CCChhhhhhhhh-hhccCCCCceEEEEcccCCc
Q 000739 854 ----AVVEEHSEDFRLDPLLNI--------HLHHNLT----------EILPMVANCATE-LSQNEQHFPGCSEKAFKIHS 910 (1322)
Q Consensus 854 ----~~~~e~~~~f~~D~~~~l--------~~~~nl~----------dwNp~~d~QA~d-~hRIGQ~k~V~VyRlit~~T 910 (1322)
+.|.+.+++|+.||...+ ++|.||+ |||||+|.||+| ||||||||.|+||||||+||
T Consensus 1376 SVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGT 1455 (1549)
T KOG0392|consen 1376 SVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGT 1455 (1549)
T ss_pred CCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhccc
Confidence 388999999999986443 5689998 999999999999 99999999999999999999
Q ss_pred ccccchhHhhhhcc
Q 000739 911 IETCDENARKCQRV 924 (1322)
Q Consensus 911 iEE~i~~~~k~~~~ 924 (1322)
+|||||.+||.|+=
T Consensus 1456 LEEKVMgLQkFKmn 1469 (1549)
T KOG0392|consen 1456 LEEKVMGLQKFKMN 1469 (1549)
T ss_pred HHHHHhhHHHHhhH
Confidence 99999999999873
No 5
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=2.7e-75 Score=714.88 Aligned_cols=475 Identities=19% Similarity=0.261 Sum_probs=352.4
Q ss_pred CCcEEEEeCCchhHHHHHHHHhcCCCCCCeEEEEcCCCccccccccc---chh-hhccCcCEEEEehHHHhhhcccCCCC
Q 000739 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSI---MDI-SELVGADIVLTTYDVLKEDLSHDSDR 573 (1322)
Q Consensus 498 ~~~tLIV~P~SLl~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~---~~~-~~l~~~DVVITTYe~L~~d~~~~~~~ 573 (1322)
.||+|||+|.|++.+|++||..|+ .+++++|+|....+-..+.. ... ...-+++++||||+++.++.
T Consensus 420 ~gpflvvvplst~~~W~~ef~~w~---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk------ 490 (1373)
T KOG0384|consen 420 HGPFLVVVPLSTITAWEREFETWT---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDK------ 490 (1373)
T ss_pred cCCeEEEeehhhhHHHHHHHHHHh---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccH------
Confidence 489999999999999999999999 79999999986543211100 000 22347999999999999875
Q ss_pred CccchhhhhhcccCCCcchhccccceeeeeccCccccCCchHHHHHHHHHhccceEEEEeccCCCCChhhhHhhhhccCC
Q 000739 574 HEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKS 653 (1322)
Q Consensus 574 ~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p 653 (1322)
..|..++|.++++||||++||..|+++..+..+...||+++||||+||++.|||+|++||.|
T Consensus 491 ------------------~~L~~i~w~~~~vDeahrLkN~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P 552 (1373)
T KOG0384|consen 491 ------------------AELSKIPWRYLLVDEAHRLKNDESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMP 552 (1373)
T ss_pred ------------------hhhccCCcceeeecHHhhcCchHHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCC
Confidence 36999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHcCCCCCCccchHHHHHHHhhhhheecccccccccCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHH
Q 000739 654 SPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGY 733 (1322)
Q Consensus 654 ~~f~~~~~F~~~~~~p~~~g~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~ 733 (1322)
+.|.+...|...+ .......+..|+.+|+|+||||.|+||. ..|||+.+.++.|+||+.|+++|+.++++....
T Consensus 553 ~kf~~~~~f~~~~----~~~~e~~~~~L~~~L~P~~lRr~kkdve--kslp~k~E~IlrVels~lQk~yYk~ILtkN~~~ 626 (1373)
T KOG0384|consen 553 GKFDSWDEFLEEF----DEETEEQVRKLQQILKPFLLRRLKKDVE--KSLPPKEETILRVELSDLQKQYYKAILTKNFSA 626 (1373)
T ss_pred CCCCcHHHHHHhh----cchhHHHHHHHHHHhhHHHHHHHHhhhc--cCCCCCcceEEEeehhHHHHHHHHHHHHhhHHH
Confidence 9999999998877 2345667889999999999999999995 459999999999999999999999998864432
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHccCCcCCCcccccccCCC--CCHHHHHHH--
Q 000739 734 AREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSP--LSMDEILMV-- 809 (1322)
Q Consensus 734 a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~l~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~~~--~t~eelL~~-- 809 (1322)
.. + |. ......+|+.+|.||+|||||+|+.+......... ..-++.|..
T Consensus 627 Lt------------K---G~------------~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI 679 (1373)
T KOG0384|consen 627 LT------------K---GA------------KGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALI 679 (1373)
T ss_pred Hh------------c---cC------------CCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHH
Confidence 21 1 10 11125799999999999999999876543321110 112333322
Q ss_pred -------HHHHHHHhhhhhcchhhhhhhhHhHHHHHHHhHhHHHHHHHHHHH-----HHHHHhhhccCCC---Ccce---
Q 000739 810 -------LIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMA-----VVEEHSEDFRLDP---LLNI--- 871 (1322)
Q Consensus 810 -------Ll~~~~~e~~e~~rkvLifsq~la~L~ile~~l~~a~~~y~~~l~-----~~~e~~~~f~~D~---~~~l--- 871 (1322)
||+++.....+.+|+||||||++.|||||.+++......|+...+ .++..++.|+... |.+|
T Consensus 680 ~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLST 759 (1373)
T KOG0384|consen 680 QSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLST 759 (1373)
T ss_pred HhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEec
Confidence 233444444455599999999999999999999998888877665 6666677777533 4444
Q ss_pred ---eeEecCC----------CCChhhhhhhhh-hhccCCCCceEEEEcccCCcccccchhHhhhhcccc-----------
Q 000739 872 ---HLHHNLT----------EILPMVANCATE-LSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSR----------- 926 (1322)
Q Consensus 872 ---~~~~nl~----------dwNp~~d~QA~d-~hRIGQ~k~V~VyRlit~~TiEE~i~~~~k~~~~~~----------- 926 (1322)
++|+||+ ||||++|+|||+ ||||||+|.|+||||||++||||.|.+.||+|+|..
T Consensus 760 RAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~KmvLD~aVIQ~m~t~~ 839 (1373)
T KOG0384|consen 760 RAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLKMVLDHAVIQRMDTKG 839 (1373)
T ss_pred ccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHHHhhhHHHHHHhhcccc
Confidence 7788988 999999999999 999999999999999999999999999999999876
Q ss_pred -ccCCCCCCCCCCCCCCCccccCCCCCC-CCCCcCCCCCCCChhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 000739 927 -EENSDFTDAEDPSGHLSDLSENGFNGD-RKSDCCVSSSSFDDASLITVCENLKQKYLSGFSVKLSVAQQEFRKSYMQVC 1004 (1322)
Q Consensus 927 -~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~l~~~~~~l~~~Yl~~~~~~~~~a~~~~~~~~~~v~ 1004 (1322)
++.++.-.++++++...++.+++++.. ++ ..-+...++++-.+..+.+-..... ... .+|.-+.-+|.
T Consensus 840 ~~s~~~~f~K~ELsaILKfGA~~lfke~ene------~s~~~e~DIDeIL~rae~~~t~~~~---~~~-a~e~ls~fkva 909 (1373)
T KOG0384|consen 840 KTSKSNPFSKEELSAILKFGAYELFKEEENE------ESKFCEMDIDEILERAETRITEESD---FMK-ASELLSQFKVA 909 (1373)
T ss_pred ccCCCCCCCHHHHHHHHHhchHHhhhccccc------cccccccCHHHHHhhcccccccccc---cch-hHHHHhhcccc
Confidence 222222278888899999999999873 22 1234445566555555444333222 112 22333333443
Q ss_pred HHhhh----cccccChhHHHHHHHhhcCCcchHHHHHHHHHH
Q 000739 1005 NALDD----REKQYSAWWLEALHHAEGNKDFSAELIRKIEEA 1042 (1322)
Q Consensus 1005 ~~~~~----~~~~~~~Ww~~~l~~~~~~~~~~~~l~~~i~~~ 1042 (1322)
++..+ .-....-=|-+++..-+..+-.+++-.+.+++.
T Consensus 910 d~~~dd~~~~~~~~didwd~iipe~~r~~~~eeer~ke~ee~ 951 (1373)
T KOG0384|consen 910 DIKADDPADLEAERDIDWDRIIPEEERERIEEEERLKELEEL 951 (1373)
T ss_pred ccccCChhhhhhhccCChhhhCCHHHHhcchhhhhHHHHHhh
Confidence 33210 000011236677766665554555544444443
No 6
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=5.1e-71 Score=653.96 Aligned_cols=375 Identities=21% Similarity=0.264 Sum_probs=294.4
Q ss_pred CCcEEEEeCCchhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccc
Q 000739 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1322)
Q Consensus 498 ~~~tLIV~P~SLl~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1322)
.||.|||||+|++.||.+||.+||| +|+|..|+|+...|...+.... ..-..|||++|||..+....+ +
T Consensus 448 ~gpHLVVvPsSTleNWlrEf~kwCP--sl~Ve~YyGSq~ER~~lR~~i~-~~~~~ydVllTTY~la~~~kd--------D 516 (941)
T KOG0389|consen 448 PGPHLVVVPSSTLENWLREFAKWCP--SLKVEPYYGSQDERRELRERIK-KNKDDYDVLLTTYNLAASSKD--------D 516 (941)
T ss_pred CCCcEEEecchhHHHHHHHHHHhCC--ceEEEeccCcHHHHHHHHHHHh-ccCCCccEEEEEeecccCChH--------H
Confidence 3799999999999999999999998 9999999999876543332222 222389999999999875321 1
Q ss_pred hhhhhhcccCCCcchhccccceeeeeccCccccCCchHHHHHHHHHhccceEEEEeccCCCCChhhhHhhhhccCCCCCC
Q 000739 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS 657 (1322)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f~ 657 (1322)
++.|....|++||.||||++||..|.+++.+..++|.+|++|||||+||+|.||++||.|+.|..|.
T Consensus 517 -------------Rsflk~~~~n~viyDEgHmLKN~~SeRy~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~ 583 (941)
T KOG0389|consen 517 -------------RSFLKNQKFNYVIYDEGHMLKNRTSERYKHLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFD 583 (941)
T ss_pred -------------HHHHHhccccEEEecchhhhhccchHHHHHhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhh
Confidence 2578889999999999999999999999999999999999999999999999999999999999998
Q ss_pred Ch-hHHHHHHcCCCC-CCc-------cchHHHHHHHhhhhheecccccccccCCCCCCeEEEEEecCCHHHHHHHHHHHH
Q 000739 658 IS-RWWIEVIRDPYE-NGD-------VGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHE 728 (1322)
Q Consensus 658 ~~-~~F~~~~~~p~~-~g~-------~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e 728 (1322)
+. ..+...|...-. .++ .+.+.+.+.+++||+|||.|++|+.+ ||||..+|.+|+|+..|+.+|+.+.+
T Consensus 584 ~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILRR~K~qVL~~--LPpK~~~Ie~c~mse~Q~~~Y~~~~~ 661 (941)
T KOG0389|consen 584 SSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILRRLKSQVLKQ--LPPKIQRIEYCEMSEKQKQLYDELIE 661 (941)
T ss_pred ccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCccceeEeeecchHHHHHHHHHHH
Confidence 64 445555532211 122 24577888999999999999999887 99999999999999999999998766
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHccCCcCCCccccc-----cc------
Q 000739 729 TCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRS-----LQ------ 797 (1322)
Q Consensus 729 ~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~l~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~-----l~------ 797 (1322)
... ...... +.+. . ... -+.||+|||+++||-|...-... +.
T Consensus 662 ~~~-----------~~~~~~------~~ns--~-------~~~-~~vlmqlRK~AnHPLL~R~~Y~de~L~~mak~il~e 714 (941)
T KOG0389|consen 662 LYD-----------VKLNEV------SKNS--E-------LKS-GNVLMQLRKAANHPLLFRSIYTDEKLRKMAKRILNE 714 (941)
T ss_pred HHh-----------hhcccc------cccc--c-------ccc-chHHHHHHHHhcChhHHHHhccHHHHHHHHHHHhCc
Confidence 421 000000 1110 0 001 35899999999999985432210 00
Q ss_pred ----------------------------------CCCCC--------HHHHHHHHHHHHHHhhhhhcchhhhhhhhHhHH
Q 000739 798 ----------------------------------QSPLS--------MDEILMVLIGKTKIEGEEALRKLVMALNGLAGI 835 (1322)
Q Consensus 798 ----------------------------------~~~~t--------~eelL~~Ll~~~~~e~~e~~rkvLifsq~la~L 835 (1322)
...+. .=..|..|+.+++.+| ++||+||||+.||
T Consensus 715 ~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G----~RVLiFSQFTqmL 790 (941)
T KOG0389|consen 715 PAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKG----DRVLIFSQFTQML 790 (941)
T ss_pred hhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcC----CEEEEeeHHHHHH
Confidence 00000 0125567777776666 8999999999999
Q ss_pred HHHHHhHhHHHHHHHHHHH-----HHHHHhhhccCCCCcce--------eeEecCC----------CCChhhhhhhhh-h
Q 000739 836 ALIEKNLSQAVSLYKEAMA-----VVEEHSEDFRLDPLLNI--------HLHHNLT----------EILPMVANCATE-L 891 (1322)
Q Consensus 836 ~ile~~l~~a~~~y~~~l~-----~~~e~~~~f~~D~~~~l--------~~~~nl~----------dwNp~~d~QA~d-~ 891 (1322)
||||-.+......|....+ .|+..+++|+.|...++ +.|+||+ ++||..|.||.| |
T Consensus 791 DILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRc 870 (941)
T KOG0389|consen 791 DILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRC 870 (941)
T ss_pred HHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHHH
Confidence 9999988887766665443 88999999999886544 4566666 799999999999 9
Q ss_pred hccCCCCceEEEEcccCCcccccchhHhhhhccccccC
Q 000739 892 SQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSREEN 929 (1322)
Q Consensus 892 hRIGQ~k~V~VyRlit~~TiEE~i~~~~k~~~~~~~~~ 929 (1322)
||+||+|+|+||||||++||||.|+.++|+|...+-..
T Consensus 871 HRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~l 908 (941)
T KOG0389|consen 871 HRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADL 908 (941)
T ss_pred HhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhh
Confidence 99999999999999999999999999999998877543
No 7
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=9.9e-69 Score=682.69 Aligned_cols=364 Identities=20% Similarity=0.248 Sum_probs=291.3
Q ss_pred CCcEEEEeCCchhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccc
Q 000739 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1322)
Q Consensus 498 ~~~tLIV~P~SLl~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1322)
.+|+|||||+|++.||.+||.+|+| .+++++|+|....+.... ........+|||||||+++.++.
T Consensus 219 ~gp~LIVvP~SlL~nW~~Ei~kw~p--~l~v~~~~G~~~eR~~~~--~~~~~~~~~dVvITSYe~l~~e~---------- 284 (1033)
T PLN03142 219 TGPHMVVAPKSTLGNWMNEIRRFCP--VLRAVKFHGNPEERAHQR--EELLVAGKFDVCVTSFEMAIKEK---------- 284 (1033)
T ss_pred CCCEEEEeChHHHHHHHHHHHHHCC--CCceEEEeCCHHHHHHHH--HHHhcccCCCcceecHHHHHHHH----------
Confidence 4799999999999999999999997 899999999765431100 01122357999999999998764
Q ss_pred hhhhhhcccCCCcchhccccceeeeeccCccccCCchHHHHHHHHHhccceEEEEeccCCCCChhhhHhhhhccCCCCCC
Q 000739 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS 657 (1322)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f~ 657 (1322)
..|..+.|++||+||||+|||..|+++++++.|++.+||+|||||+||++.|||+||+||.|+.|+
T Consensus 285 --------------~~L~k~~W~~VIvDEAHrIKN~~Sklskalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~ 350 (1033)
T PLN03142 285 --------------TALKRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFS 350 (1033)
T ss_pred --------------HHhccCCCCEEEEcCccccCCHHHHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCC
Confidence 357888999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHcCCCCCCccchHHHHHHHhhhhheecccccccccCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHH
Q 000739 658 ISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREV 737 (1322)
Q Consensus 658 ~~~~F~~~~~~p~~~g~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~a~~~ 737 (1322)
+...|...|..+...+....+..|+.+++|||+||+|++|... |||+.+.+++|.||+.|+++|+.+.......+
T Consensus 351 s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~--LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l--- 425 (1033)
T PLN03142 351 SAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKG--LPPKKETILKVGMSQMQKQYYKALLQKDLDVV--- 425 (1033)
T ss_pred CHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhh--CCCceeEEEeeCCCHHHHHHHHHHHHHHHHHH---
Confidence 9999999998765555667788999999999999999999655 99999999999999999999998876432211
Q ss_pred HHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHccCCcCCCcccccccCC-------CCCHHHHHHHH
Q 000739 738 IQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQS-------PLSMDEILMVL 810 (1322)
Q Consensus 738 ~~~~~~~~~~r~~~g~~~~~~~~~~~l~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~~-------~~t~eelL~~L 810 (1322)
+ . ......+++.+++||++|+||+|+.+........ ....-.+|+.|
T Consensus 426 -~--------~-----------------g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdkL 479 (1033)
T PLN03142 426 -N--------A-----------------GGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDKL 479 (1033)
T ss_pred -h--------c-----------------cccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHHHHH
Confidence 0 0 0013468899999999999999976543211000 01122456666
Q ss_pred HHHHHHhhhhhcchhhhhhhhHhHHHHHHHhHhHHHHHHH-----HHHHHHHHHhhhccCCCCc---ce-----------
Q 000739 811 IGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYK-----EAMAVVEEHSEDFRLDPLL---NI----------- 871 (1322)
Q Consensus 811 l~~~~~e~~e~~rkvLifsq~la~L~ile~~l~~a~~~y~-----~~l~~~~e~~~~f~~D~~~---~l----------- 871 (1322)
+.+++.. ++++|||||++.+|++|++.+......|. .....+++.++.|+.+... .|
T Consensus 480 L~~Lk~~----g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGIN 555 (1033)
T PLN03142 480 LPKLKER----DSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGIN 555 (1033)
T ss_pred HHHHHhc----CCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCc
Confidence 6665544 48999999999999999998765533332 2234788888999765421 11
Q ss_pred ------eeEecCCCCChhhhhhhhh-hhccCCCCceEEEEcccCCcccccchhHhhhhccc
Q 000739 872 ------HLHHNLTEILPMVANCATE-LSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVS 925 (1322)
Q Consensus 872 ------~~~~nl~dwNp~~d~QA~d-~hRIGQ~k~V~VyRlit~~TiEE~i~~~~k~~~~~ 925 (1322)
+++|++ ||||+++.||++ ||||||+++|.||||+++|||||+|++.+.+|.-.
T Consensus 556 Lt~Ad~VIiyD~-dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl~L 615 (1033)
T PLN03142 556 LATADIVILYDS-DWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLAL 615 (1033)
T ss_pred hhhCCEEEEeCC-CCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHHHHH
Confidence 334444 599999999999 99999999999999999999999999999887654
No 8
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=4.3e-67 Score=613.03 Aligned_cols=397 Identities=25% Similarity=0.366 Sum_probs=296.1
Q ss_pred cEEEEeCCchhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccchh
Q 000739 500 ATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRR 579 (1322)
Q Consensus 500 ~tLIV~P~SLl~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~~ 579 (1322)
+||||||+||+.||..||++-.....|+|++|||.++. .+.+..+.+||||||||..+.+.-.....
T Consensus 385 ~TLII~PaSli~qW~~Ev~~rl~~n~LsV~~~HG~n~r------~i~~~~L~~YDvViTTY~lva~~~~~e~~------- 451 (901)
T KOG4439|consen 385 KTLIICPASLIHQWEAEVARRLEQNALSVYLYHGPNKR------EISAKELRKYDVVITTYNLVANKPDDELE------- 451 (901)
T ss_pred CeEEeCcHHHHHHHHHHHHHHHhhcceEEEEecCCccc------cCCHHHHhhcceEEEeeeccccCCchhhh-------
Confidence 69999999999999999999988788999999998752 24688899999999999999872110000
Q ss_pred hhhhcccCCCcchhccccceeeeeccCccccCCchHHHHHHHHHhccceEEEEeccCCCCChhhhHhhhhccCCCCCCCh
Q 000739 580 FMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSIS 659 (1322)
Q Consensus 580 ~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f~~~ 659 (1322)
. ....++|..+.|.||||||||.|||++|+.+.+++.|.+.+|||||||||||++-|+|+|+.||+..||++.
T Consensus 452 ------~-~~~~spL~~I~W~RVILDEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~ 524 (901)
T KOG4439|consen 452 ------E-GKNSSPLARIAWSRVILDEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDL 524 (901)
T ss_pred ------c-ccCccHHHHhhHHHhhhhhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchH
Confidence 0 112378999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHcCCCCCCccchHHHHHHHhhhhheecccccccc---cCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 000739 660 RWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSD---ELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYARE 736 (1322)
Q Consensus 660 ~~F~~~~~~p~~~g~~~~~~~L~~lL~~~mLRRtK~dV~~---eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~a~~ 736 (1322)
..|++.+..+- ....+++.-+.+++||||||..... ...||++...++.++|+..|...|+-+.+........
T Consensus 525 ~~Wke~i~~~s----~~g~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq 600 (901)
T KOG4439|consen 525 KQWKENIDNMS----KGGANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQ 600 (901)
T ss_pred HHHHHhccCcc----ccchhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHH
Confidence 99999886543 2335678888999999999998643 3469999999999999999999999887654444333
Q ss_pred HHHHHHHHHhhccCCCCCCC--------CCccCc----------ccchhhHHHHHHHHHHHHHHccCCcCCCcccccccC
Q 000739 737 VIQRLKDNILKRNVPGHASS--------DALYNP----------IITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQ 798 (1322)
Q Consensus 737 ~~~~~~~~~~~r~~~g~~~~--------~~~~~~----------~l~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~ 798 (1322)
++.+ -..+.-.+.+.+ ...+++ ........+||..|+||||+||||.+..+++.....
T Consensus 601 ~L~~----~e~~~~~~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~ 676 (901)
T KOG4439|consen 601 FLLQ----REDRNNDGGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEF 676 (901)
T ss_pred HHHh----hhhhccccCccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHh
Confidence 3322 111111111100 000000 001234567999999999999999765544332110
Q ss_pred ---CC--------------------CC--------------HHHH---------HHHHHHHHHHhhhhhcchhhhhhhhH
Q 000739 799 ---SP--------------------LS--------------MDEI---------LMVLIGKTKIEGEEALRKLVMALNGL 832 (1322)
Q Consensus 799 ---~~--------------------~t--------------~eel---------L~~Ll~~~~~e~~e~~rkvLifsq~l 832 (1322)
+. +| .+++ +...++.........-.+++|-||++
T Consensus 677 ~~~g~~~sde~~~e~~~l~el~k~~~T~~~~D~~ed~p~~~~~q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwt 756 (901)
T KOG4439|consen 677 QMNGGDDSDEEQLEEDNLAELEKNDETDCSDDNCEDLPTAFPDQAFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWT 756 (901)
T ss_pred hhcCcchhhhhhhhhhHHHhhhhcccccccccccccccccchhhhcccccchhHHHHHHHHHHHHhhcccceeeehhHHH
Confidence 00 00 0000 01111111112234446999999999
Q ss_pred hHHHHHHHhHhHHHHHHHH-----HHHHHHHHhhhccCCCC---------cceeeEecCC----------CCChhhhhhh
Q 000739 833 AGIALIEKNLSQAVSLYKE-----AMAVVEEHSEDFRLDPL---------LNIHLHHNLT----------EILPMVANCA 888 (1322)
Q Consensus 833 a~L~ile~~l~~a~~~y~~-----~l~~~~e~~~~f~~D~~---------~~l~~~~nl~----------dwNp~~d~QA 888 (1322)
.+|.+++..+..-...|.. ....+++.++.|+...- ..-+++.||. -|||+-+.||
T Consensus 757 svLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQA 836 (901)
T KOG4439|consen 757 SVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQA 836 (901)
T ss_pred HHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHH
Confidence 9999999998887766653 33477888888765443 1115556655 7999999999
Q ss_pred hh-hhccCCCCceEEEEcccCCcccccchhHhhhhcc
Q 000739 889 TE-LSQNEQHFPGCSEKAFKIHSIETCDENARKCQRV 924 (1322)
Q Consensus 889 ~d-~hRIGQ~k~V~VyRlit~~TiEE~i~~~~k~~~~ 924 (1322)
.| +||+||+|+|.|||++++||||+.|+.+|..|.-
T Consensus 837 cDRIYR~GQkK~V~IhR~~~~gTvEqrV~~LQdkKld 873 (901)
T KOG4439|consen 837 CDRIYRMGQKKDVFIHRLMCKGTVEQRVKSLQDKKLD 873 (901)
T ss_pred HHHHHHhcccCceEEEEEEecCcHHHHHHHHHHHHHH
Confidence 99 9999999999999999999999999999998753
No 9
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=5.4e-67 Score=590.54 Aligned_cols=389 Identities=29% Similarity=0.391 Sum_probs=298.6
Q ss_pred CcEEEEeCCchhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccch
Q 000739 499 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1322)
Q Consensus 499 ~~tLIV~P~SLl~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~ 578 (1322)
.|||||||.-.+.||.+||.+|+. |++++++|||.++.. ...++..||+|+|||.++.+.+.... .|-+
T Consensus 232 a~tLVvaP~VAlmQW~nEI~~~T~-gslkv~~YhG~~R~~-------nikel~~YDvVLTty~vvEs~yRk~~---~Gfr 300 (791)
T KOG1002|consen 232 APTLVVAPTVALMQWKNEIERHTS-GSLKVYIYHGAKRDK-------NIKELMNYDVVLTTYAVVESVYRKQD---YGFR 300 (791)
T ss_pred CCeeEEccHHHHHHHHHHHHHhcc-CceEEEEEecccccC-------CHHHhhcCcEEEEecHHHHHHHHhcc---cccc
Confidence 579999999999999999999997 899999999987753 67899999999999999998764311 1111
Q ss_pred hhhhhcccCCCcchhccccceeeeeccCccccCCchHHHHHHHHHhccceEEEEeccCCCCChhhhHhhhhccCCCCCCC
Q 000739 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI 658 (1322)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f~~ 658 (1322)
+ +.--.+.+++|+.+.|.||||||||.||+..|.+++++..|.+.+||||||||+||++.|||+|++||+..||..
T Consensus 301 r----Kngv~ke~SlLHsi~~~RiIlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsy 376 (791)
T KOG1002|consen 301 R----KNGVDKEKSLLHSIKFYRIILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSY 376 (791)
T ss_pred c----cCCcccccchhhhceeeeeehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchh
Confidence 1 111223458999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred h-------------------------------hHHHHHHcCCCCCC-----ccchHHHHHHHhhhhheecccccccccCC
Q 000739 659 S-------------------------------RWWIEVIRDPYENG-----DVGAMEFTHKFFKEIMCRSSKVHVSDELQ 702 (1322)
Q Consensus 659 ~-------------------------------~~F~~~~~~p~~~g-----~~~~~~~L~~lL~~~mLRRtK~dV~~eL~ 702 (1322)
+ -+|......|+... +..+....+.+++.+|+||||-.-+++|.
T Consensus 377 yfc~~cdc~~~~~~ftdr~~c~~c~h~~m~h~~~~n~~mlk~IqkfG~eGpGk~af~~~h~llk~ImlrrTkl~RAdDLg 456 (791)
T KOG1002|consen 377 YFCTKCDCASLDWKFTDRMHCDHCSHNIMQHTCFFNHFMLKPIQKFGVEGPGKEAFNNIHTLLKNIMLRRTKLERADDLG 456 (791)
T ss_pred hhhhhccccccceeecccccCCcccchhhhhhhhhcccccccchhhcccCchHHHHHHHHHHHHHHHHHHhhcccccccC
Confidence 3 23445555666552 22455677889999999999999999999
Q ss_pred CCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHH
Q 000739 703 LPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQA 782 (1322)
Q Consensus 703 LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~l~~~~~~~iL~~L~rLRQi 782 (1322)
|||+...+..=-|+.+|..+|+.++.........+++. | .--.++++|+..|+||||+
T Consensus 457 LPPRiv~vRrD~fn~eE~D~YeSLY~dSkrkfntyiee-----------G-----------vvlNNYAnIF~LitRmRQ~ 514 (791)
T KOG1002|consen 457 LPPRIVTVRRDFFNEEEKDLYESLYKDSKRKFNTYIEE-----------G-----------VVLNNYANIFTLITRMRQA 514 (791)
T ss_pred CCccceeeehhhhhhHHHHHHHHHHHhhHHhhhhHHhh-----------h-----------hhhhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999986543322222111 1 1123578999999999999
Q ss_pred ccCCcCCCcccc-ccc---C------------------C------------------------------CC---------
Q 000739 783 CCHPQVGSSGLR-SLQ---Q------------------S------------------------------PL--------- 801 (1322)
Q Consensus 783 C~HP~L~~~~~~-~l~---~------------------~------------------------------~~--------- 801 (1322)
..||+|+..... .+. + + ++
T Consensus 515 aDHP~LVl~S~~~n~~~enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~al 594 (791)
T KOG1002|consen 515 ADHPDLVLYSANANLPDENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPAL 594 (791)
T ss_pred ccCcceeeehhhcCCCccccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccchhh
Confidence 999998543110 000 0 0 00
Q ss_pred -----------------CHHH-----HHHHHHHHHHHhh-hhhcchhhhhhhhHhHHHHHHHhHhHHHHHH---H--HHH
Q 000739 802 -----------------SMDE-----ILMVLIGKTKIEG-EEALRKLVMALNGLAGIALIEKNLSQAVSLY---K--EAM 853 (1322)
Q Consensus 802 -----------------t~ee-----lL~~Ll~~~~~e~-~e~~rkvLifsq~la~L~ile~~l~~a~~~y---~--~~l 853 (1322)
.|++ -++.|++++.--. .+---|-++||||+.|||+|+-.+.++.... . .+.
T Consensus 595 ek~~l~~Fk~sSIlnRinm~~~qsSTKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~ 674 (791)
T KOG1002|consen 595 EKTDLKGFKASSILNRINMDDWQSSTKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSP 674 (791)
T ss_pred hhcchhhhhhHHHhhhcchhhhcchhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCCh
Confidence 0111 1122332221110 1111267899999999999999998885432 2 233
Q ss_pred HHHHHHhhhccCCCCcce--------eeEecCC----------CCChhhhhhhhh-hhccCCCCceEEEEcccCCccccc
Q 000739 854 AVVEEHSEDFRLDPLLNI--------HLHHNLT----------EILPMVANCATE-LSQNEQHFPGCSEKAFKIHSIETC 914 (1322)
Q Consensus 854 ~~~~e~~~~f~~D~~~~l--------~~~~nl~----------dwNp~~d~QA~d-~hRIGQ~k~V~VyRlit~~TiEE~ 914 (1322)
..+.+.++.|..|+...+ ++-.||+ ||||+++-||+| .|||||.|||.|.||+-++||||+
T Consensus 675 ~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~k 754 (791)
T KOG1002|consen 675 AARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEK 754 (791)
T ss_pred HHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHH
Confidence 477788888999987544 5666776 899999999999 999999999999999999999999
Q ss_pred chhHhhhhcc
Q 000739 915 DENARKCQRV 924 (1322)
Q Consensus 915 i~~~~k~~~~ 924 (1322)
|.++||+|..
T Consensus 755 IieLQeKKa~ 764 (791)
T KOG1002|consen 755 IIELQEKKAN 764 (791)
T ss_pred HHHHHHHHhh
Confidence 9999999754
No 10
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=8.2e-68 Score=635.38 Aligned_cols=232 Identities=25% Similarity=0.435 Sum_probs=201.1
Q ss_pred CcEEEEeCCchhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccch
Q 000739 499 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1322)
Q Consensus 499 ~~tLIV~P~SLl~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~ 578 (1322)
||.|||||+|++-||.-||++||| +++++.|.|..+.+...+. ....-..|.|.||||.++-.++.
T Consensus 666 GPHLIVVpTsviLnWEMElKRwcP--glKILTYyGs~kErkeKRq--gW~kPnaFHVCItSYklv~qd~~---------- 731 (1958)
T KOG0391|consen 666 GPHLIVVPTSVILNWEMELKRWCP--GLKILTYYGSHKERKEKRQ--GWAKPNAFHVCITSYKLVFQDLT---------- 731 (1958)
T ss_pred CCceEEeechhhhhhhHHHhhhCC--cceEeeecCCHHHHHHHhh--cccCCCeeEEeehhhHHHHhHHH----------
Confidence 899999999999999999999998 8999999999877543222 23344568899999999999863
Q ss_pred hhhhhcccCCCcchhccccceeeeeccCccccCCchHHHHHHHHHhccceEEEEeccCCCCChhhhHhhhhccCCCCCCC
Q 000739 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI 658 (1322)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f~~ 658 (1322)
.|.+..|.++||||||+|||.+|+.++++..+++.+|++|||||+||++.|||+|++||.|..|.+
T Consensus 732 --------------AFkrkrWqyLvLDEaqnIKnfksqrWQAllnfnsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~s 797 (1958)
T KOG0391|consen 732 --------------AFKRKRWQYLVLDEAQNIKNFKSQRWQALLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFAS 797 (1958)
T ss_pred --------------HHHhhccceeehhhhhhhcchhHHHHHHHhccchhheeeecCCchhhHHHHHHHHHHHhhchhhhh
Confidence 578889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHcCCCCC---C----ccchHHHHHHHhhhhheecccccccccCCCCCCeEEEEEecCCHHHHHHHHHHHHHHH
Q 000739 659 SRWWIEVIRDPYEN---G----DVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCV 731 (1322)
Q Consensus 659 ~~~F~~~~~~p~~~---g----~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~ 731 (1322)
...|+.+|.+|... + +...+.+||++++||+|||+|.||.++ ||.|.++|++|.||..|+.+|+.+..+..
T Consensus 798 hd~fk~wfsnPltgmiEgsqeyn~klV~RLHkVlrPfiLRRlK~dVEKQ--lpkKyEHvv~CrLSkRQR~LYDDfmsq~~ 875 (1958)
T KOG0391|consen 798 HDIFKPWFSNPLTGMIEGSQEYNHKLVIRLHKVLRPFILRRLKRDVEKQ--LPKKYEHVVKCRLSKRQRALYDDFMSQPG 875 (1958)
T ss_pred hhhHHHHhcCcchhhcccchhhchHHHHHHHHHhHHHHHHHHHHHHHHh--cchhhhhheeeehhhhHHHHHHHHhhccc
Confidence 99999999998764 2 235678999999999999999999665 99999999999999999999998754311
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHccCCcC
Q 000739 732 GYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQV 788 (1322)
Q Consensus 732 ~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~l~~~~~~~iL~~L~rLRQiC~HP~L 788 (1322)
. +. .+...+.++|++.||+||++||||.|
T Consensus 876 T---------Ke-------------------tLkSGhfmsVlnilmqLrKvCNHPnL 904 (1958)
T KOG0391|consen 876 T---------KE-------------------TLKSGHFMSVLNILMQLRKVCNHPNL 904 (1958)
T ss_pred h---------hh-------------------HhhcCchhHHHHHHHHHHHHcCCCCc
Confidence 0 00 11122467899999999999999987
No 11
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=8.7e-67 Score=605.76 Aligned_cols=357 Identities=24% Similarity=0.314 Sum_probs=293.2
Q ss_pred CCcEEEEeCCchhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccch----hhhccCcCEEEEehHHHhhhcccCCCC
Q 000739 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMD----ISELVGADIVLTTYDVLKEDLSHDSDR 573 (1322)
Q Consensus 498 ~~~tLIV~P~SLl~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~----~~~l~~~DVVITTYe~L~~d~~~~~~~ 573 (1322)
.||+|||+|+|++.||.+||.+|+| .++++.|.|....+...+.... -...+.++||||||.++..|..
T Consensus 617 wGPFLVVtpaStL~NWaqEisrFlP--~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDek----- 689 (1185)
T KOG0388|consen 617 WGPFLVVTPASTLHNWAQEISRFLP--SFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEK----- 689 (1185)
T ss_pred CCceEEeehHHHHhHHHHHHHHhCc--cceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHH-----
Confidence 4899999999999999999999998 9999999998776532211111 2345678999999999988742
Q ss_pred CccchhhhhhcccCCCcchhccccceeeeeccCccccCCchHHHHHHHHHhccceEEEEeccCCCCChhhhHhhhhccCC
Q 000739 574 HEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKS 653 (1322)
Q Consensus 574 ~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p 653 (1322)
.|.++.|.++||||||-||+..|.+++.+..+++++|++||||||||+..|||+||+|+.|
T Consensus 690 -------------------y~qkvKWQYMILDEAQAIKSSsS~RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMP 750 (1185)
T KOG0388|consen 690 -------------------YLQKVKWQYMILDEAQAIKSSSSSRWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMP 750 (1185)
T ss_pred -------------------HHHhhhhhheehhHHHHhhhhhhhHHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhh
Confidence 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHcCCCCCC-------ccchHHHHHHHhhhhheecccccccccCCCCCCeEEEEEecCCHHHHHHHHHH
Q 000739 654 SPFSISRWWIEVIRDPYENG-------DVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQ 726 (1322)
Q Consensus 654 ~~f~~~~~F~~~~~~p~~~g-------~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l 726 (1322)
..|.+...|.++|...|+.. +...+.+||.+|+||||||.|+||..+ |-.|++..++|.||-.|+.+|+.+
T Consensus 751 sLFDshneFseWFSKdIEshAe~~~tlneqqL~RLH~ILKPFMLRRvKkdV~sE--Lg~Kteidv~CdLs~RQ~~lYq~i 828 (1185)
T KOG0388|consen 751 SLFDSHNEFSEWFSKDIESHAEMNTTLNEQQLQRLHAILKPFMLRRVKKDVISE--LGQKTEIDVYCDLSYRQKVLYQEI 828 (1185)
T ss_pred HhhhchHHHHHHHhhhhHhHHHhcCCcCHHHHHHHHHHHhHHHHHHHHHHHHHH--hccceEEEEEechhHHHHHHHHHH
Confidence 99999999999998777642 346789999999999999999999877 999999999999999999999987
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHccCCcCCCcc-------------c
Q 000739 727 HETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSG-------------L 793 (1322)
Q Consensus 727 ~e~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~l~~~~~~~iL~~L~rLRQiC~HP~L~~~~-------------~ 793 (1322)
...+. ...+...+|+||++||||.|+... +
T Consensus 829 k~~iS-------------------------------------~~E~~~~vmQlrKVCNHPdLFer~e~~s~L~~~V~~nl 871 (1185)
T KOG0388|consen 829 KRSIS-------------------------------------SMEMENLVMQLRKVCNHPDLFERLEPRSGLSLEVSDNL 871 (1185)
T ss_pred HHHhh-------------------------------------HHHHHHHHHHHHHhcCChHHHhhcCCcceeEEEcccCH
Confidence 65432 123445788999999999873210 0
Q ss_pred c--------c----------------------------------ccC----------------CCC--------------
Q 000739 794 R--------S----------------------------------LQQ----------------SPL-------------- 801 (1322)
Q Consensus 794 ~--------~----------------------------------l~~----------------~~~-------------- 801 (1322)
. + +.+ +++
T Consensus 872 ~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~w~~~l~~e~k~G~~~~~n~e~~~Kavtr 951 (1185)
T KOG0388|consen 872 GDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNAWYLRLSLEFKYGGYVFRNVEEAGKAVTR 951 (1185)
T ss_pred HHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcchhcccceeeeccCCcccccHHHHHHHHHH
Confidence 0 0 000 000
Q ss_pred -------------------------------------------------------------------CHHH---------
Q 000739 802 -------------------------------------------------------------------SMDE--------- 805 (1322)
Q Consensus 802 -------------------------------------------------------------------t~ee--------- 805 (1322)
.|+.
T Consensus 952 ~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId~E~~~~pLn~~i~~Ppm~~FitdSgKL~ 1031 (1185)
T KOG0388|consen 952 NLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEIDLENRHIPLNTTIYVPPMNTFITDSGKLV 1031 (1185)
T ss_pred HhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCCccccCcccccceecCcHHhhhcccccee
Confidence 0110
Q ss_pred HHHHHHHHHHHhhhhhcchhhhhhhhHhHHHHHHHhHhHHHHHHHHH-----HHHHHHHhhhccC-CCCcce------ee
Q 000739 806 ILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEA-----MAVVEEHSEDFRL-DPLLNI------HL 873 (1322)
Q Consensus 806 lL~~Ll~~~~~e~~e~~rkvLifsq~la~L~ile~~l~~a~~~y~~~-----l~~~~e~~~~f~~-D~~~~l------~~ 873 (1322)
+|+.|+.+++.++ |+||+|.|++.|+++|++++......|-.. +..+.+.+.+++. |.|.++ +.
T Consensus 1032 ~LDeLL~kLkaeg----HRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGL 1107 (1185)
T KOG0388|consen 1032 VLDELLPKLKAEG----HRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGL 1107 (1185)
T ss_pred eHHHHHHHhhcCC----ceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcc
Confidence 4677888888887 999999999999999999988776655432 3367788888876 334333 56
Q ss_pred EecCC----------CCChhhhhhhhh-hhccCCCCceEEEEcccCCcccccchhHhhhhc
Q 000739 874 HHNLT----------EILPMVANCATE-LSQNEQHFPGCSEKAFKIHSIETCDENARKCQR 923 (1322)
Q Consensus 874 ~~nl~----------dwNp~~d~QA~d-~hRIGQ~k~V~VyRlit~~TiEE~i~~~~k~~~ 923 (1322)
++||+ ||||..|.||+| |||.||+++|+|||||++|||||++++.+++|.
T Consensus 1108 GINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~qK~ 1168 (1185)
T KOG0388|consen 1108 GINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERANQKD 1168 (1185)
T ss_pred cccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHhhhHH
Confidence 67776 999999999999 999999999999999999999999999999863
No 12
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=4.2e-64 Score=606.83 Aligned_cols=364 Identities=21% Similarity=0.279 Sum_probs=295.7
Q ss_pred CCcEEEEeCCchhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccc
Q 000739 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1322)
Q Consensus 498 ~~~tLIV~P~SLl~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1322)
.||.|||||.|++.||..||.+|+| ++..++|.|....|.... ......+|+|++|||+.+.++-
T Consensus 444 ~GP~LvivPlstL~NW~~Ef~kWaP--Sv~~i~YkGtp~~R~~l~---~qir~gKFnVLlTtyEyiikdk---------- 508 (1157)
T KOG0386|consen 444 QGPFLIIVPLSTLVNWSSEFPKWAP--SVQKIQYKGTPQQRSGLT---KQQRHGKFNVLLTTYEYIIKDK---------- 508 (1157)
T ss_pred CCCeEEeccccccCCchhhcccccc--ceeeeeeeCCHHHHhhHH---HHHhcccceeeeeeHHHhcCCH----------
Confidence 4899999999999999999999998 999999999987653221 2222389999999999998752
Q ss_pred hhhhhhcccCCCcchhccccceeeeeccCccccCCchHHHHHHHH-HhccceEEEEeccCCCCChhhhHhhhhccCCCCC
Q 000739 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMAL-RLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 656 (1322)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~-~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f 656 (1322)
..|.+|.|.++||||+|++||..++.+..+. ...+.+|++|||||+||++.|||+||+||-|..|
T Consensus 509 --------------~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IF 574 (1157)
T KOG0386|consen 509 --------------ALLSKISWKYMIIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIF 574 (1157)
T ss_pred --------------HHHhccCCcceeecccccccchhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchh
Confidence 4799999999999999999999999999998 5789999999999999999999999999999999
Q ss_pred CChhHHHHHHcCCCCCCcc----------chHHHHHHHhhhhheecccccccccCCCCCCeEEEEEecCCHHHHHHHHHH
Q 000739 657 SISRWWIEVIRDPYENGDV----------GAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQ 726 (1322)
Q Consensus 657 ~~~~~F~~~~~~p~~~g~~----------~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l 726 (1322)
.+...|..+|..||...+. -.+.+|+.+|+||+|||.|++|..+ ||.|++.++.|.||..|+.+|..+
T Consensus 575 nS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKkeVE~~--LPdKve~viKC~mSalQq~lY~~m 652 (1157)
T KOG0386|consen 575 NSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKKEVEQE--LPDKVEDVIKCDMSALQQSLYKQM 652 (1157)
T ss_pred hhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhHHHhhh--CchhhhHhhheehhhhhHhhhHHH
Confidence 9999999999999976321 2467999999999999999999766 999999999999999999999986
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHccCCcCCCccccccc--CCC----
Q 000739 727 HETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQ--QSP---- 800 (1322)
Q Consensus 727 ~e~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~l~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~--~~~---- 800 (1322)
...- ... .+..-....+..+++.+|.||++||||+++...-.... ..+
T Consensus 653 ~~~g----------------------~l~----~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~~dL~ 706 (1157)
T KOG0386|consen 653 QNKG----------------------QLL----KDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYDIKDLV 706 (1157)
T ss_pred HhCC----------------------CCC----cCchhccccchhhhhHhHHHHHhcCCchhhhhhccccccccChhHHH
Confidence 4320 000 00001122356789999999999999999732211111 111
Q ss_pred --CCHHHHHHHHHHHHHHhhhhhcchhhhhhhhHhHHHHHHHhHhHHHHHHHHHHH-----HHHHHhhhccCC-CCcce-
Q 000739 801 --LSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMA-----VVEEHSEDFRLD-PLLNI- 871 (1322)
Q Consensus 801 --~t~eelL~~Ll~~~~~e~~e~~rkvLifsq~la~L~ile~~l~~a~~~y~~~l~-----~~~e~~~~f~~D-~~~~l- 871 (1322)
....|+|+.++.+++..+ |+||.|+|++.+++|++.++...-..|....+ .+.+..+.|+.- .-.++
T Consensus 707 R~sGKfELLDRiLPKLkatg----HRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~F 782 (1157)
T KOG0386|consen 707 RVSGKFELLDRILPKLKATG----HRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIF 782 (1157)
T ss_pred HhccHHHHHHhhhHHHHhcC----cchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeee
Confidence 124578888888887776 99999999999999999999888888876544 555666777642 22222
Q ss_pred -------eeEecCC----------CCChhhhhhhhh-hhccCCCCceEEEEcccCCcccccchhHhhhh
Q 000739 872 -------HLHHNLT----------EILPMVANCATE-LSQNEQHFPGCSEKAFKIHSIETCDENARKCQ 922 (1322)
Q Consensus 872 -------~~~~nl~----------dwNp~~d~QA~d-~hRIGQ~k~V~VyRlit~~TiEE~i~~~~k~~ 922 (1322)
+.+.||- ||||..|.||+| ||||||+++|.|+||+|.+++||+|+..++-|
T Consensus 783 llstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~a~~K 851 (1157)
T KOG0386|consen 783 LLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAEAFYK 851 (1157)
T ss_pred eeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHHHHHh
Confidence 3455554 899999999999 99999999999999999999999999986654
No 13
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=1.5e-55 Score=539.31 Aligned_cols=365 Identities=17% Similarity=0.191 Sum_probs=280.7
Q ss_pred CCcEEEEeCCchhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccc--cchhhhccCcCEEEEehHHHhhhcccCCCCCc
Q 000739 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTS--IMDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1322)
Q Consensus 498 ~~~tLIV~P~SLl~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~--~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~ 575 (1322)
....|||||++|+.+|.+||.+|..+..+..+.+.|..+...-... .......-.+-|.+.||++++....
T Consensus 298 ~~k~lVV~P~sLv~nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~------- 370 (776)
T KOG0390|consen 298 INKPLVVAPSSLVNNWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCR------- 370 (776)
T ss_pred ccccEEEccHHHHHHHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHH-------
Confidence 4678999999999999999999998667888888887664100000 0011122345699999999997653
Q ss_pred cchhhhhhcccCCCcchhccccceeeeeccCccccCCchHHHHHHHHHhccceEEEEeccCCCCChhhhHhhhhccCCCC
Q 000739 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSP 655 (1322)
Q Consensus 576 ~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~ 655 (1322)
.+.....+++|+||||++||..|.+.+++.+|.+.+|++|||||+||++.|+|++|+|++|+.
T Consensus 371 -----------------~il~~~~glLVcDEGHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~ 433 (776)
T KOG0390|consen 371 -----------------KILLIRPGLLVCDEGHRLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGF 433 (776)
T ss_pred -----------------HHhcCCCCeEEECCCCCccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhh
Confidence 477788999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHcCCCCCCcc-----------chHHHHHHHhhhhheecccccccccCCCCCCeEEEEEecCCHHHHHHHH
Q 000739 656 FSISRWWIEVIRDPYENGDV-----------GAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQ 724 (1322)
Q Consensus 656 f~~~~~F~~~~~~p~~~g~~-----------~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~ 724 (1322)
+++...|++.+..|+.+++. +.+..|+.++..|++||+-+...+. ||++.++|+.|.+|+.|+.+|.
T Consensus 434 Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~--LP~k~e~vv~~n~t~~Q~~~~~ 511 (776)
T KOG0390|consen 434 LGSISSFKKKFEIPILRGRDADASEEDREREERLQELRELTNKFILRRTGDILLKY--LPGKYEYVVFCNPTPIQKELYK 511 (776)
T ss_pred ccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHHHHHHHhheeecccchhhhh--CCCceeEEEEeCCcHHHHHHHH
Confidence 99999999999999887432 2366799999999999999777666 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHccCCcCCC------ccccc---
Q 000739 725 SQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGS------SGLRS--- 795 (1322)
Q Consensus 725 ~l~e~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~l~~~~~~~iL~~L~rLRQiC~HP~L~~------~~~~~--- 795 (1322)
.+..... . . .+ ....|..++.|+++|+||.|+. +....
T Consensus 512 ~l~~~~~---~----~--------~~------------------~~~~l~~~~~L~k~cnhP~L~~~~~~~~~e~~~~~~ 558 (776)
T KOG0390|consen 512 KLLDSMK---M----R--------TL------------------KGYALELITKLKKLCNHPSLLLLCEKTEKEKAFKNP 558 (776)
T ss_pred HHHHHHH---h----h--------hh------------------hcchhhHHHHHHHHhcCHHhhcccccccccccccCh
Confidence 8865320 0 0 00 1125778999999999999975 10000
Q ss_pred ---ccCC---------C-CCHHHHHHHHHHHHHHhhhhhcchhhhhhhhHhHHHHHHHhHhHHHHH---H--HHHHHHHH
Q 000739 796 ---LQQS---------P-LSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSL---Y--KEAMAVVE 857 (1322)
Q Consensus 796 ---l~~~---------~-~t~eelL~~Ll~~~~~e~~e~~rkvLifsq~la~L~ile~~l~~a~~~---y--~~~l~~~~ 857 (1322)
+... . ...--+|..|+..++ ++.+.++++-+|.+..++++++.+.-.... . ......|+
T Consensus 559 ~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~---ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq 635 (776)
T KOG0390|consen 559 ALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIR---EKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQ 635 (776)
T ss_pred HhhhcccccccccccchhhhHHHHHHHHHHHHh---hhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHH
Confidence 0000 0 001113344443333 344567888889999999998866544221 2 23445889
Q ss_pred HHhhhccCCCCc-ce--------eeEecCC----------CCChhhhhhhhh-hhccCCCCceEEEEcccCCcccccchh
Q 000739 858 EHSEDFRLDPLL-NI--------HLHHNLT----------EILPMVANCATE-LSQNEQHFPGCSEKAFKIHSIETCDEN 917 (1322)
Q Consensus 858 e~~~~f~~D~~~-~l--------~~~~nl~----------dwNp~~d~QA~d-~hRIGQ~k~V~VyRlit~~TiEE~i~~ 917 (1322)
..++.|+.-+.+ ++ +.|.||. ||||++|.||++ |||+||+|+|.||||++.|||||+|++
T Consensus 636 ~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEEk~~q 715 (776)
T KOG0390|consen 636 KLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEEKIYQ 715 (776)
T ss_pred HHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCCchHHHHH
Confidence 999999876654 22 5677776 899999999999 999999999999999999999999999
Q ss_pred Hhhhhcc
Q 000739 918 ARKCQRV 924 (1322)
Q Consensus 918 ~~k~~~~ 924 (1322)
.|-.|+.
T Consensus 716 rq~~K~~ 722 (776)
T KOG0390|consen 716 RQTHKEG 722 (776)
T ss_pred HHHHhhh
Confidence 8876653
No 14
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=3.9e-52 Score=513.19 Aligned_cols=370 Identities=30% Similarity=0.437 Sum_probs=298.5
Q ss_pred CCCcEEEEeCCchhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCcc
Q 000739 497 ATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1322)
Q Consensus 497 ~~~~tLIV~P~SLl~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~ 576 (1322)
..+.+|||||.+++.||..|+.++..++.+.+++|+| +.. ....+.+||||||||.++..
T Consensus 188 ~~kttLivcp~s~~~qW~~elek~~~~~~l~v~v~~g-r~k--------d~~el~~~dVVltTy~il~~----------- 247 (674)
T KOG1001|consen 188 EFKTTLIVCPTSLLTQWKTELEKVTEEDKLSIYVYHG-RTK--------DKSELNSYDVVLTTYDILKN----------- 247 (674)
T ss_pred ccCceeEecchHHHHHHHHHHhccCCccceEEEEecc-ccc--------ccchhcCCceEEeeHHHhhc-----------
Confidence 4578999999999999999998888888999999999 211 57788999999999999985
Q ss_pred chhhhhhcccCCCcchhccccceeeeeccCccccCCchHHHHHHHHHhccceEEEEeccCCCCChhhhHhhhhccCCCCC
Q 000739 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 656 (1322)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f 656 (1322)
++|..+.|.|||+||||.++|.+++.++++..|.+.+||||||||+||+++|||+++.|+..+||
T Consensus 248 ---------------~~l~~i~w~Riildea~~ikn~~tq~~~a~~~L~a~~RWcLtgtPiqn~~~~lysl~~fl~~~p~ 312 (674)
T KOG1001|consen 248 ---------------SPLVKIKWLRIVLDEAHTIKNKDTQIFKAVCQLDAKYRWCLTGTPIQNNLDELYSLFKFLEIHPY 312 (674)
T ss_pred ---------------ccccceeEEEEEeccccccCCcchHhhhhheeeccceeeeecCChhhhhHHHHHHHHHHhhcCCc
Confidence 25888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHcCCCCCCc-cchHHHHHHHhhhhheeccccccc---ccCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHH
Q 000739 657 SISRWWIEVIRDPYENGD-VGAMEFTHKFFKEIMCRSSKVHVS---DELQLPPQEECVSWLTFSPIEEHFYQSQHETCVG 732 (1322)
Q Consensus 657 ~~~~~F~~~~~~p~~~g~-~~~~~~L~~lL~~~mLRRtK~dV~---~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~ 732 (1322)
....+|...+..|+..+. ...+..++.+++.+|+||+|..-. ..+.|||++..++++.++..|+.+|..+...+..
T Consensus 313 ~~~~~~~~~i~~p~~~~~~~~~~k~l~~~L~~v~lrrtK~~~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~ 392 (674)
T KOG1001|consen 313 CDQNYFKLLIQDPDERNKYKEGVKTLQGILKKVMLRRTKEMEVDGKPILELPPKTVFVTEVDLSKSERSAYKALKANSRN 392 (674)
T ss_pred hhhHHHHHHhcChhhhhhHHHHHHHHHHHHHHHHhcccccccccCccccccCcceeEeeeccccHhHHHHHHHHhhhhhh
Confidence 999999999999999887 788899999999999999998532 2357999999999999999999999999877665
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHccCCcCCCcccccccC--------------
Q 000739 733 YAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQ-------------- 798 (1322)
Q Consensus 733 ~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~l~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~-------------- 798 (1322)
.....+.. | ....++..++..+++|||+||||.++.........
T Consensus 393 ~~~~~~~~-----------~-----------~~~~~Y~~~l~~lLrlrq~c~h~~lv~~~~~~~~~~~~~~~~~~~~i~~ 450 (674)
T KOG1001|consen 393 QFSNYANE-----------G-----------TVSSTYAFFLKNLLRLRQACDHSLLVMYEMDSLGDSGSAAALIIRLIVD 450 (674)
T ss_pred HHHHHhhh-----------c-----------hhhhhHHHHHHHHHHHHHHccchHhhhhhhhccccccccchHHHHHHHH
Confidence 54433222 0 01234788999999999999999985422111000
Q ss_pred ------C------------CCCHHHHH------------------------HHHHH-----------------------H
Q 000739 799 ------S------------PLSMDEIL------------------------MVLIG-----------------------K 813 (1322)
Q Consensus 799 ------~------------~~t~eelL------------------------~~Ll~-----------------------~ 813 (1322)
. .-.|.... ..++. .
T Consensus 451 l~~~~~c~ic~~~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s~~~~~~~~~~~~~~s~ki~~~~~~ 530 (674)
T KOG1001|consen 451 LSVSHWCHICCDLDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLLSANPLPSIINDLLPESSKIYAFLKI 530 (674)
T ss_pred HhhccccccccccccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHhhcccccchhhhccchhhhhHHHHHH
Confidence 0 00000000 01111 0
Q ss_pred H-HHhhhhhcchhhhhhhhHhHHHHHHHhHhHHHHHH-----HHHHHHHHHHhhhccCCCCcce--------eeEecCC-
Q 000739 814 T-KIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLY-----KEAMAVVEEHSEDFRLDPLLNI--------HLHHNLT- 878 (1322)
Q Consensus 814 ~-~~e~~e~~rkvLifsq~la~L~ile~~l~~a~~~y-----~~~l~~~~e~~~~f~~D~~~~l--------~~~~nl~- 878 (1322)
+ ..++.+. .++++|||++.++++++-.+......| +..+..+..-...|..|+.+.+ .+++||.
T Consensus 531 l~~~~~s~~-~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~ 609 (674)
T KOG1001|consen 531 LQAKEMSEQ-PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTA 609 (674)
T ss_pred HhhccCCCC-CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhh
Confidence 0 1123333 499999999999999998776554432 3444567777778888887655 5666666
Q ss_pred ---------CCChhhhhhhhh-hhccCCCCceEEEEcccCCcccccchhHhhhhcc
Q 000739 879 ---------EILPMVANCATE-LSQNEQHFPGCSEKAFKIHSIETCDENARKCQRV 924 (1322)
Q Consensus 879 ---------dwNp~~d~QA~d-~hRIGQ~k~V~VyRlit~~TiEE~i~~~~k~~~~ 924 (1322)
+|||+++.||+| ||||||+|+|+|+|++.++||||.++.+|+||+-
T Consensus 610 a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i~dtveer~l~iq~~K~~ 665 (674)
T KOG1001|consen 610 ASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEERILKIQEKKRE 665 (674)
T ss_pred hhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehhhhccHHHHHHHHHHHHH
Confidence 999999999999 9999999999999999999999999999999863
No 15
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=1.4e-52 Score=546.24 Aligned_cols=375 Identities=25% Similarity=0.311 Sum_probs=290.2
Q ss_pred CCcEEEEeCCchhHHHHHHHHhcCCCCCCe-EEEEcCCCcc-cccccccchhhhcc------CcCEEEEehHHHhhhccc
Q 000739 498 TGATLIVCPAPILAQWDAEITRHTRPGSLK-TCIYEGARNS-SLSDTSIMDISELV------GADIVLTTYDVLKEDLSH 569 (1322)
Q Consensus 498 ~~~tLIV~P~SLl~qW~~Ei~k~~~~g~l~-V~vy~G~~~~-~~~~~~~~~~~~l~------~~DVVITTYe~L~~d~~~ 569 (1322)
.+|+|||||.+++.||.+|+.+|.+ .++ +.+|+|.... .. ......... .+++++|||+.+++...
T Consensus 390 ~~~~liv~p~s~~~nw~~e~~k~~~--~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~- 463 (866)
T COG0553 390 LGPALIVVPASLLSNWKREFEKFAP--DLRLVLVYHGEKSELDK---KREALRDLLKLHLVIIFDVVITTYELLRRFLV- 463 (866)
T ss_pred CCCeEEEecHHHHHHHHHHHhhhCc--cccceeeeeCCcccccH---HHHHHHHHhhhcccceeeEEechHHHHHHhhh-
Confidence 4799999999999999999999997 788 9999998752 00 001122222 28999999999998310
Q ss_pred CCCCCccchhhhhhcccCCCcchhccccceeeeeccCccccCCchHHHHHHHHHhccceEEEEeccCCCCChhhhHhhhh
Q 000739 570 DSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLR 649 (1322)
Q Consensus 570 ~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~ 649 (1322)
....+..+.|+++|+||||+|||..|..+++++.+++.+||+|||||++|++.|||++++
T Consensus 464 --------------------~~~~l~~~~~~~~v~DEa~~ikn~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~ 523 (866)
T COG0553 464 --------------------DHGGLKKIEWDRVVLDEAHRIKNDQSSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQ 523 (866)
T ss_pred --------------------hHHHHhhceeeeeehhhHHHHhhhhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHH
Confidence 013688999999999999999999999999999999999999999999999999999999
Q ss_pred -ccCCCCCC-ChhHHHHHHcCCCCCCcc--------chHHHHHHHhhhhheeccccc--ccccCCCCCCeEEEEEecCCH
Q 000739 650 -FLKSSPFS-ISRWWIEVIRDPYENGDV--------GAMEFTHKFFKEIMCRSSKVH--VSDELQLPPQEECVSWLTFSP 717 (1322)
Q Consensus 650 -FL~p~~f~-~~~~F~~~~~~p~~~g~~--------~~~~~L~~lL~~~mLRRtK~d--V~~eL~LPpk~e~vv~v~LS~ 717 (1322)
|+.|+.++ +...|...|..|...... ..+..|+.+++||++||+|.+ +..+ ||++.+.++.|.+++
T Consensus 524 ~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~f~lrr~k~~~~v~~~--Lp~k~e~~~~~~l~~ 601 (866)
T COG0553 524 EFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRKLLSPFILRRTKEDVEVLKE--LPPKIEKVLECELSE 601 (866)
T ss_pred HHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHhhcccccchhHHHh--CChhhhhhhhhcccH
Confidence 99999999 558999999988876432 344558899999999999999 6544 999999999999999
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHccCCcCCCcccc
Q 000739 718 IEEHFYQSQHE---TCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLR 794 (1322)
Q Consensus 718 ~Qr~lY~~l~e---~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~l~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~ 794 (1322)
.|+.+|..... .....+...... . . .. ..... ....+++.+++|||+|+||.++.....
T Consensus 602 ~q~~~y~~~~~~~~~~~~~~~~~~~~-------~-------~-~~-~~~~~--~~~~~l~~~~~lr~~~~~p~l~~~~~~ 663 (866)
T COG0553 602 EQRELYEALLEGAEKNQQLLEDLEKA-------D-------S-DE-NRIGD--SELNILALLTRLRQICNHPALVDEGLE 663 (866)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-------c-------c-cc-ccccc--hhhHHHHHHHHHHHhccCccccccccc
Confidence 99999999877 322222211110 0 0 00 00000 256899999999999999999776511
Q ss_pred cccC---------------------CCCCHHHHHHHHH-HHHHHhhhhhcc--hhhhhhhhHhHHHHHHHhHhHHHHH--
Q 000739 795 SLQQ---------------------SPLSMDEILMVLI-GKTKIEGEEALR--KLVMALNGLAGIALIEKNLSQAVSL-- 848 (1322)
Q Consensus 795 ~l~~---------------------~~~t~eelL~~Ll-~~~~~e~~e~~r--kvLifsq~la~L~ile~~l~~a~~~-- 848 (1322)
.... ..+..-..+..++ .....++ + ++++|+|++.++++|+..+......
T Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~----~~~kvlifsq~t~~l~il~~~l~~~~~~~~ 739 (866)
T COG0553 664 ATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEG----HYHKVLIFSQFTPVLDLLEDYLKALGIKYV 739 (866)
T ss_pred cccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhc----ccccEEEEeCcHHHHHHHHHHHHhcCCcEE
Confidence 1100 0002234556666 5555555 6 9999999999999999988776522
Q ss_pred -HHHH--HHHHHHHhhhccCCCCc--------ceeeEecCC----------CCChhhhhhhhh-hhccCCCCceEEEEcc
Q 000739 849 -YKEA--MAVVEEHSEDFRLDPLL--------NIHLHHNLT----------EILPMVANCATE-LSQNEQHFPGCSEKAF 906 (1322)
Q Consensus 849 -y~~~--l~~~~e~~~~f~~D~~~--------~l~~~~nl~----------dwNp~~d~QA~d-~hRIGQ~k~V~VyRli 906 (1322)
+.+. ...+++.++.|+.++-. ..+++.||+ ||||+++.||+| ||||||+++|.|||++
T Consensus 740 ~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i 819 (866)
T COG0553 740 RLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLI 819 (866)
T ss_pred EEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEee
Confidence 2333 35788889999887421 114555555 799999999999 9999999999999999
Q ss_pred cCCcccccchhHhhhh
Q 000739 907 KIHSIETCDENARKCQ 922 (1322)
Q Consensus 907 t~~TiEE~i~~~~k~~ 922 (1322)
++|||||+|.+++..|
T Consensus 820 ~~~tiEe~i~~~~~~K 835 (866)
T COG0553 820 TRGTIEEKILELQEKK 835 (866)
T ss_pred cCCcHHHHHHHHHHHH
Confidence 9999999999999998
No 16
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=2e-48 Score=462.81 Aligned_cols=383 Identities=17% Similarity=0.206 Sum_probs=273.5
Q ss_pred CCcEEEEeCCchhHHHHHHHHhcCCC----CCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCC
Q 000739 498 TGATLIVCPAPILAQWDAEITRHTRP----GSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDR 573 (1322)
Q Consensus 498 ~~~tLIV~P~SLl~qW~~Ei~k~~~~----g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~ 573 (1322)
++++|||||.+++.||.+||.+|.+. ..+.|+.+...++. ..+......+..+-.|.|+.|++++.-......
T Consensus 728 ~ktaLvV~PlNt~~NW~~EFekWm~~~e~~~~leV~eL~~vkr~--e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~v- 804 (1567)
T KOG1015|consen 728 FKTALVVCPLNTALNWMNEFEKWMEGLEDDEKLEVSELATVKRP--EERSYMLQRWQEDGGVMIIGYDMYRNLAQGRNV- 804 (1567)
T ss_pred CceEEEEcchHHHHHHHHHHHHhcccccccccceeehhhhccCh--HHHHHHHHHHHhcCCEEEEehHHHHHHhcccch-
Confidence 57899999999999999999999972 13455444444331 111222334556668999999999985421111
Q ss_pred CccchhhhhhcccCCCcchhccccceeeeeccCccccCCchHHHHHHHHHhccceEEEEeccCCCCChhhhHhhhhccCC
Q 000739 574 HEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKS 653 (1322)
Q Consensus 574 ~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p 653 (1322)
+++ ..+. .....|..-..++||+||||.|||..|.+++++..+++++||+|||||+||||.|.|.+++|+.|
T Consensus 805 --k~r-k~ke-----~f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe 876 (1567)
T KOG1015|consen 805 --KSR-KLKE-----IFNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKE 876 (1567)
T ss_pred --hhh-HHHH-----HHHHhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhccc
Confidence 111 1110 01134677788999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHcCCCCCCcc------------chHHHHHHHhhhhheecccccccccCCCCCCeEEEEEecCCHHHHH
Q 000739 654 SPFSISRWWIEVIRDPYENGDV------------GAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEH 721 (1322)
Q Consensus 654 ~~f~~~~~F~~~~~~p~~~g~~------------~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~ 721 (1322)
+.+|+...|...|.+||++|.. ....-|+.+|..++-|+--.-+... ||||+++|+.|.||+.|..
T Consensus 877 ~lLGs~~EfrNRFvNpI~nGq~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk~--LPPK~eyVi~vrltelQ~~ 954 (1567)
T KOG1015|consen 877 NLLGSIKEFRNRFVNPIQNGQCADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVLTKF--LPPKHEYVIAVRLTELQCK 954 (1567)
T ss_pred ccccCcHHHHHhhcCccccCccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccc--CCCceeEEEEEeccHHHHH
Confidence 9999999999999999998753 2234678889999988877766655 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHccCCcCCC-----------
Q 000739 722 FYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGS----------- 790 (1322)
Q Consensus 722 lY~~l~e~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~l~~~~~~~iL~~L~rLRQiC~HP~L~~----------- 790 (1322)
+|+.+++... .. +.+..++ +.-...+|+....|++|-+||....
T Consensus 955 LYq~yL~h~~-----------------~~----G~d~eg~----~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~enkR~ 1009 (1567)
T KOG1015|consen 955 LYQYYLDHLT-----------------GV----GNDSEGG----RGAGARLFQDFQMLSRIWTHPWCLQLDSISKENKRY 1009 (1567)
T ss_pred HHHHHHhhcc-----------------cc----CCccccc----cchhhhHHHHHHHHHHHhcCCCceeechhhhhhccc
Confidence 9998765100 00 1111111 1124678999999999999997411
Q ss_pred --c----ccc------------------------------ccc-----C-----------------C--------CCC--
Q 000739 791 --S----GLR------------------------------SLQ-----Q-----------------S--------PLS-- 802 (1322)
Q Consensus 791 --~----~~~------------------------------~l~-----~-----------------~--------~~t-- 802 (1322)
. .+. +.. + + +-+
T Consensus 1010 ~seddm~~fi~D~sde~e~s~~s~d~~~~~ks~~~s~~Desss~~~~~g~~ev~k~k~rk~r~~~~~~~~~~g~~~D~~l 1089 (1567)
T KOG1015|consen 1010 FSEDDMDEFIADDSDETEMSLSSDDYTKKKKSGKKSKKDESSSGSGSDGDVEVIKVKNRKSRGGGEGNVDETGNNPDVSL 1089 (1567)
T ss_pred ccccchhccccCCCccccccccccchhhcccccccccccccccccccCCchhhhhhhhhhccccccCcccccCCCcchHH
Confidence 0 000 000 0 0 000
Q ss_pred -HH-------------------HHH-------------HHHHHHHHHhhhhhcchhhhhhhhHhHHHHHHHhHhHHHHH-
Q 000739 803 -MD-------------------EIL-------------MVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSL- 848 (1322)
Q Consensus 803 -~e-------------------elL-------------~~Ll~~~~~e~~e~~rkvLifsq~la~L~ile~~l~~a~~~- 848 (1322)
|. +++ ..||-.+...|++-+.|+|||||.+.-|++|+..+..+...
T Consensus 1090 ~ll~dlag~~s~~~d~ppew~kd~v~e~d~~v~~~SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~g 1169 (1567)
T KOG1015|consen 1090 KLLEDLAGSSSNPSDPPPEWYKDFVTEADAEVLEHSGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREG 1169 (1567)
T ss_pred HHhhcccccccCCCCCchHhHHhhhhhhhhhhhhcCcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccC
Confidence 00 000 11223444567888899999999999999999977654221
Q ss_pred ---------------------H-H----HHHHHHHHHhhhccCCCCc--ce-------------------eeEecCCCCC
Q 000739 849 ---------------------Y-K----EAMAVVEEHSEDFRLDPLL--NI-------------------HLHHNLTEIL 881 (1322)
Q Consensus 849 ---------------------y-~----~~l~~~~e~~~~f~~D~~~--~l-------------------~~~~nl~dwN 881 (1322)
| + ..-..++..++.|+.-... ++ +|+++- -||
T Consensus 1170 k~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDa-sWN 1248 (1567)
T KOG1015|consen 1170 KEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDA-SWN 1248 (1567)
T ss_pred ccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEec-ccC
Confidence 1 1 1223667777777543221 11 334443 599
Q ss_pred hhhhhhhhh-hhccCCCCceEEEEcccCCcccccchhHh
Q 000739 882 PMVANCATE-LSQNEQHFPGCSEKAFKIHSIETCDENAR 919 (1322)
Q Consensus 882 p~~d~QA~d-~hRIGQ~k~V~VyRlit~~TiEE~i~~~~ 919 (1322)
|.-|.|++= +||.||+|||.|||||+.||+||+|+..|
T Consensus 1249 PSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEeKIYkRQ 1287 (1567)
T KOG1015|consen 1249 PSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEEKIYKRQ 1287 (1567)
T ss_pred CccchHHHHHHHhhcCcCceeehhhhhcccHHHHHHHHH
Confidence 999999999 99999999999999999999999998765
No 17
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=3e-45 Score=418.74 Aligned_cols=241 Identities=32% Similarity=0.518 Sum_probs=188.8
Q ss_pred CcEEEEeCCchhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccch
Q 000739 499 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1322)
Q Consensus 499 ~~tLIV~P~SLl~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~ 578 (1322)
+++|||||++++.||..||.+|++++.+++++|.|..... .........++++||||+++.....
T Consensus 59 ~~~LIv~P~~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~~~vvi~ty~~~~~~~~---------- 123 (299)
T PF00176_consen 59 KKTLIVVPSSLLSQWKEEIEKWFDPDSLRVIIYDGDSERR-----RLSKNQLPKYDVVITTYETLRKARK---------- 123 (299)
T ss_dssp S-EEEEE-TTTHHHHHHHHHHHSGT-TS-EEEESSSCHHH-----HTTSSSCCCSSEEEEEHHHHH--TS----------
T ss_pred cceeEeeccchhhhhhhhhccccccccccccccccccccc-----cccccccccceeeeccccccccccc----------
Confidence 4699999999999999999999976689999999986111 1134556789999999999992110
Q ss_pred hhhhhcccCCCcchhccccceeeeeccCccccCCchHHHHHHHHHhccceEEEEeccCCCCChhhhHhhhhccCCCCCCC
Q 000739 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI 658 (1322)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f~~ 658 (1322)
+.....+..++|++||+||||.+||..|..++++..|.+.++|+|||||++|++.|||+++.||.|+.+++
T Consensus 124 ---------~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~ 194 (299)
T PF00176_consen 124 ---------KKDKEDLKQIKWDRVIVDEAHRLKNKDSKRYKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSD 194 (299)
T ss_dssp ---------THTTHHHHTSEEEEEEETTGGGGTTTTSHHHHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSS
T ss_pred ---------cccccccccccceeEEEecccccccccccccccccccccceEEeeccccccccccccccchheeecccccc
Confidence 00113577788999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHcCCCCCCccchHHHHHHHhhhhheecccccccccCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHH
Q 000739 659 SRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVI 738 (1322)
Q Consensus 659 ~~~F~~~~~~p~~~g~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~a~~~~ 738 (1322)
...|.+.+..+...........|+.+++++++||+++++ ...||++.+.++.++||+.|+.+|+.+.........
T Consensus 195 ~~~f~~~~~~~~~~~~~~~~~~L~~~l~~~~~r~~~~d~--~~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~--- 269 (299)
T PF00176_consen 195 RRSFKKWFYRPDKENSYENIERLRELLSEFMIRRTKKDV--EKELPPKIEHVINVELSPEQRELYNELLKEARENLK--- 269 (299)
T ss_dssp HHHHHHHTHHHHHTHHHHHHHHHHHHHCCCEECHCGGGG--CTTSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCT---
T ss_pred chhhhhhhhhhccccccccccccccccchhhhhhhcccc--cccCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHH---
Confidence 999998886553334456778999999999999999999 445999999999999999999999977654221110
Q ss_pred HHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHccCCcCC
Q 000739 739 QRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVG 789 (1322)
Q Consensus 739 ~~~~~~~~~r~~~g~~~~~~~~~~~l~~~~~~~iL~~L~rLRQiC~HP~L~ 789 (1322)
. .. .........++..+++|||+||||.|+
T Consensus 270 ---------~----------~~--~~~~~~~~~~~~~~~~lr~~c~hp~l~ 299 (299)
T PF00176_consen 270 ---------Q----------SS--RKKSKKLSSLLQILKRLRQVCNHPYLV 299 (299)
T ss_dssp ---------T-----------T----TCHHHHHHHHHHHHHHHHHH-THHC
T ss_pred ---------h----------hc--ccchhhHHHHHHHHHHHHHHhCCcccC
Confidence 0 00 112445778999999999999999874
No 18
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=2.3e-41 Score=396.03 Aligned_cols=391 Identities=18% Similarity=0.226 Sum_probs=266.3
Q ss_pred CCcEEEEeCCchhHHHHHHHHhcCCC---------CCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcc
Q 000739 498 TGATLIVCPAPILAQWDAEITRHTRP---------GSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLS 568 (1322)
Q Consensus 498 ~~~tLIV~P~SLl~qW~~Ei~k~~~~---------g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~ 568 (1322)
++++|+|+|-.++.||..||..|.|+ .++.|+++....+. +..+......+.....|+|+.|++++--.-
T Consensus 312 AKtVL~ivPiNTlQNWlsEfnmWiP~y~sD~~vrpR~F~vf~LnD~~KT-~~~Rakvi~~Wv~~GGVlLvGYemfRLL~l 390 (1387)
T KOG1016|consen 312 AKTVLVIVPINTLQNWLSEFNMWIPKYFSDTGVRPRSFEVFLLNDGVKT-FDQRAKVIEQWVQTGGVLLVGYEMFRLLIL 390 (1387)
T ss_pred cceEEEEEehHHHHHHHHHhhhhcCCCcccCCCccceeEEEEecCchhh-HHHHHHHHHHHhccCCEEEehHHHHHHHHH
Confidence 47899999999999999999999984 35677777655432 222222344556778899999999986443
Q ss_pred cCCCCCccc----hh----------hhhhcccCCCcchhccccceeeeeccCccccCCchHHHHHHHHHhccceEEEEec
Q 000739 569 HDSDRHEGD----RR----------FMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITG 634 (1322)
Q Consensus 569 ~~~~~~~~~----~~----------~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTG 634 (1322)
......... ++ ..+.+..|..+.+.|.+-..++||+||+|+|||..+.++.+++.|++++|++|||
T Consensus 391 k~~~~~grpkkt~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTG 470 (1387)
T KOG1016|consen 391 KTLPKKGRPKKTLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTG 470 (1387)
T ss_pred hcccccCCccccccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEec
Confidence 211000000 00 0011112334456788899999999999999999999999999999999999999
Q ss_pred cCCCCChhhhHhhhhccCCCCCCChhHHHHHHcCCCCCCcc------------chHHHHHHHhhhhheecccccccccCC
Q 000739 635 TPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDV------------GAMEFTHKFFKEIMCRSSKVHVSDELQ 702 (1322)
Q Consensus 635 TPiqN~l~DL~sLL~FL~p~~f~~~~~F~~~~~~p~~~g~~------------~~~~~L~~lL~~~mLRRtK~dV~~eL~ 702 (1322)
-|+||+|-|.|.+++|++|.++|+...|...|.+||..|.. .....|+.++..|+-||+..-+. +-
T Consensus 471 YPLQNNLlEYwCMVDFVRP~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk--~~ 548 (1387)
T KOG1016|consen 471 YPLQNNLLEYWCMVDFVRPKYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLK--KI 548 (1387)
T ss_pred cccccchHHHhhhheeccccccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHh--hh
Confidence 99999999999999999999999999999999999998742 22357889999999999988764 34
Q ss_pred CCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHH
Q 000739 703 LPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQA 782 (1322)
Q Consensus 703 LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~l~~~~~~~iL~~L~rLRQi 782 (1322)
||.+.++|+.|.+|..||++|+.+.-..+. ++... .....+ .|.++.-.-+|
T Consensus 549 LP~k~EyViLvr~s~iQR~LY~~Fm~d~~r-----------~~~~~-------~~~~~N----------PLkAF~vCcKI 600 (1387)
T KOG1016|consen 549 LPEKKEYVILVRKSQIQRQLYRNFMLDAKR-----------EIAAN-------NDAVFN----------PLKAFSVCCKI 600 (1387)
T ss_pred cccccceEEEEeHHHHHHHHHHHHHHHHHH-----------hhccc-------cccccC----------hHHHHHHHHHh
Confidence 999999999999999999999987532111 11000 000011 12222233344
Q ss_pred ccCCcCCC---------------------ccccc-----------------------cc--C----------------CC
Q 000739 783 CCHPQVGS---------------------SGLRS-----------------------LQ--Q----------------SP 800 (1322)
Q Consensus 783 C~HP~L~~---------------------~~~~~-----------------------l~--~----------------~~ 800 (1322)
-|||++.- .+... .. + .+
T Consensus 601 WNHPDVLY~~l~k~~~a~e~dl~vee~~~ag~~~~~~P~~~~~~~~s~~laSs~~k~~n~t~kp~~s~~~p~f~ee~~e~ 680 (1387)
T KOG1016|consen 601 WNHPDVLYRLLEKKKRAEEDDLRVEEMKFAGLQQQQSPFNSIPSNPSTPLASSTSKSANKTKKPRGSKKAPKFDEEDEEV 680 (1387)
T ss_pred cCChHHHHHHHHHhhhhhhhhhhHHHHhhhcccccCCCCCCCCCCCCCcccchhhhhhcccCCcccCcCCCCcccccccc
Confidence 46665310 00000 00 0 00
Q ss_pred CCHHHHHHHHHHHHH-----------------HhhhhhcchhhhhhhhHhHHHHHHHhHhHH------------------
Q 000739 801 LSMDEILMVLIGKTK-----------------IEGEEALRKLVMALNGLAGIALIEKNLSQA------------------ 845 (1322)
Q Consensus 801 ~t~eelL~~Ll~~~~-----------------~e~~e~~rkvLifsq~la~L~ile~~l~~a------------------ 845 (1322)
.+..+.-.+|..+.. .+-...+.++|+|||-+..|++|+.-+...
T Consensus 681 ~~y~~w~~el~~nYq~gvLen~pk~V~~~~~~des~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~ 760 (1387)
T KOG1016|consen 681 EKYSDWTFELFENYQEGVLENGPKIVISLEILDESTQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEK 760 (1387)
T ss_pred cchhhHHHHHHhhhhcccccCCCceEEEEeeeccccccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhh
Confidence 011111122322211 122234568999999999999999754422
Q ss_pred HHHHHHHH-----HHHHHHhhhccCCCCcc-e--------eeEecCC----------CCChhhhhhhhh-hhccCCCCce
Q 000739 846 VSLYKEAM-----AVVEEHSEDFRLDPLLN-I--------HLHHNLT----------EILPMVANCATE-LSQNEQHFPG 900 (1322)
Q Consensus 846 ~~~y~~~l-----~~~~e~~~~f~~D~~~~-l--------~~~~nl~----------dwNp~~d~QA~d-~hRIGQ~k~V 900 (1322)
...|-... ..++..+++|+..+-.. + ..+.||. -|||--|.||.+ ++|-||+|+.
T Consensus 761 n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~Kpc 840 (1387)
T KOG1016|consen 761 NRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPC 840 (1387)
T ss_pred ccceecccCCcccchHHHHHHhccCCCCceeeeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCce
Confidence 11121111 25666677776555322 1 2344443 699999999999 9999999999
Q ss_pred EEEEcccCCcccccchhHh
Q 000739 901 CSEKAFKIHSIETCDENAR 919 (1322)
Q Consensus 901 ~VyRlit~~TiEE~i~~~~ 919 (1322)
.|||||.-+|.|-+|.+.|
T Consensus 841 fvYRlVmD~~lEkkIydRQ 859 (1387)
T KOG1016|consen 841 FVYRLVMDNSLEKKIYDRQ 859 (1387)
T ss_pred eEEeehhhhhhHHHHHHHH
Confidence 9999999999999999876
No 19
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=2.1e-39 Score=368.69 Aligned_cols=352 Identities=16% Similarity=0.150 Sum_probs=240.1
Q ss_pred CcEEEEeCCchhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccch
Q 000739 499 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1322)
Q Consensus 499 ~~tLIV~P~SLl~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~ 578 (1322)
+|.|||||+|+...|.+++.+|+|. -..+.+..+.... .+.-....-|+|+||+++....
T Consensus 242 wplliVcPAsvrftWa~al~r~lps-~~pi~vv~~~~D~--------~~~~~t~~~v~ivSye~ls~l~----------- 301 (689)
T KOG1000|consen 242 WPLLIVCPASVRFTWAKALNRFLPS-IHPIFVVDKSSDP--------LPDVCTSNTVAIVSYEQLSLLH----------- 301 (689)
T ss_pred CcEEEEecHHHhHHHHHHHHHhccc-ccceEEEecccCC--------ccccccCCeEEEEEHHHHHHHH-----------
Confidence 5899999999999999999999983 3445555554331 1222234569999999998753
Q ss_pred hhhhhcccCCCcchhccccceeeeeccCccccCCchHHHHHHHHHh--ccceEEEEeccCCCCChhhhHhhhhccCCCCC
Q 000739 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRL--YAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 656 (1322)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L--~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f 656 (1322)
..|..-.|..||+||.|++|+..++..+++..+ .+.|.++|||||-..++.|||.++..+++..|
T Consensus 302 -------------~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlf 368 (689)
T KOG1000|consen 302 -------------DILKKEKYRVVIFDESHMLKDSKTKRTKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLF 368 (689)
T ss_pred -------------HHHhcccceEEEEechhhhhccchhhhhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhccccc
Confidence 257777899999999999999999999999876 58899999999999999999999999999999
Q ss_pred CChhHHHHHHcCCCCC------CccchHHHHHHHh-hhhheecccccccccCCCCCCeEEEEEecCCHHHHHHHHHHHHH
Q 000739 657 SISRWWIEVIRDPYEN------GDVGAMEFTHKFF-KEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHET 729 (1322)
Q Consensus 657 ~~~~~F~~~~~~p~~~------g~~~~~~~L~~lL-~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~ 729 (1322)
.++..|...|++.-.- ....+++.|+.+| +.+|+||+|.||+.+ ||||...|+++- .+.+-..-+++...
T Consensus 369 p~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~q--LPpKrr~Vv~~~-~gr~da~~~~lv~~ 445 (689)
T KOG1000|consen 369 PNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQ--LPPKRREVVYVS-GGRIDARMDDLVKA 445 (689)
T ss_pred ccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhh--CCccceEEEEEc-CCccchHHHHHHHH
Confidence 9999999988764221 2234566677665 557999999999887 999966665543 44333333333222
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHccCCcCCCcccccccCCCCCHHHHHHH
Q 000739 730 CVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMV 809 (1322)
Q Consensus 730 ~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~l~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~~~~t~eelL~~ 809 (1322)
...... .+. . . .+-...++.-++.. .....-+.+-
T Consensus 446 a~~~t~-------~~~------------------~-e---~~~~~l~l~y~~tg----------------iaK~~av~ey 480 (689)
T KOG1000|consen 446 AADYTK-------VNS------------------M-E---RKHESLLLFYSLTG----------------IAKAAAVCEY 480 (689)
T ss_pred hhhcch-------hhh------------------h-h---hhhHHHHHHHHHhc----------------ccccHHHHHH
Confidence 111000 000 0 0 00011111111110 0001111122
Q ss_pred HHHHHHHhhhhhcchhhhhhhhHhHHHHHHHhHhHHHHHH---HH--HHHHHHHHhhhccCCCCcce--------eeEec
Q 000739 810 LIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLY---KE--AMAVVEEHSEDFRLDPLLNI--------HLHHN 876 (1322)
Q Consensus 810 Ll~~~~~e~~e~~rkvLifsq~la~L~ile~~l~~a~~~y---~~--~l~~~~e~~~~f~~D~~~~l--------~~~~n 876 (1322)
++.+-. -+.+..+|+|+|..-..+|+-|+.++.....-. .+ .-..++..+..|+.+.-..+ .++..
T Consensus 481 i~~~~~-l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt 559 (689)
T KOG1000|consen 481 ILENYF-LPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLT 559 (689)
T ss_pred HHhCcc-cccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeeccccee
Confidence 211100 033445799999999999999999887653221 11 12366777888888775433 23333
Q ss_pred CC----------CCChhhhhhhhh-hhccCCCCceEEEEcccCCccccc--chhHhhhhccccccCCCC
Q 000739 877 LT----------EILPMVANCATE-LSQNEQHFPGCSEKAFKIHSIETC--DENARKCQRVSREENSDF 932 (1322)
Q Consensus 877 l~----------dwNp~~d~QA~d-~hRIGQ~k~V~VyRlit~~TiEE~--i~~~~k~~~~~~~~~~~~ 932 (1322)
++ .|||-+=.||.| ||||||+..|.||=|+.+||++|- -+-.+|=+.+++.+++..
T Consensus 560 ~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl~s~gl~s~ 628 (689)
T KOG1000|consen 560 LTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDVLGSVGLSSD 628 (689)
T ss_pred eeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHHHHhhcccCcc
Confidence 33 799999999999 999999999999999999999995 445566666777766543
No 20
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=8.2e-38 Score=398.96 Aligned_cols=342 Identities=14% Similarity=0.157 Sum_probs=229.2
Q ss_pred CCcEEEEeCCchhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccc
Q 000739 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1322)
Q Consensus 498 ~~~tLIV~P~SLl~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1322)
.+++|||||++|+.||..|+.+++ ++.+.+|.+..-.... ......+..++++|+||++++++...
T Consensus 199 ~~rvLIVvP~sL~~QW~~El~~kF---~l~~~i~~~~~~~~~~---~~~~~pf~~~~~vI~S~~~l~~~~~~-------- 264 (956)
T PRK04914 199 AERVLILVPETLQHQWLVEMLRRF---NLRFSLFDEERYAEAQ---HDADNPFETEQLVICSLDFLRRNKQR-------- 264 (956)
T ss_pred CCcEEEEcCHHHHHHHHHHHHHHh---CCCeEEEcCcchhhhc---ccccCccccCcEEEEEHHHhhhCHHH--------
Confidence 468999999999999999998887 5777788765422110 00113345689999999999874210
Q ss_pred hhhhhhcccCCCcchhccccceeeeeccCccccCCc---hHHHHHHHHHh--ccceEEEEeccCCCCChhhhHhhhhccC
Q 000739 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN---AAAATEMALRL--YAKHRWCITGTPIQRKLDDLYGLLRFLK 652 (1322)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~---~Sk~~kal~~L--~a~~RwlLTGTPiqN~l~DL~sLL~FL~ 652 (1322)
...+....|++||+||||+++|. .|+.++.+..| ++.++++|||||+||++.|+|++|+||+
T Consensus 265 -------------~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLd 331 (956)
T PRK04914 265 -------------LEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLD 331 (956)
T ss_pred -------------HHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhC
Confidence 02366779999999999999953 46778888888 5779999999999999999999999999
Q ss_pred CCCCCChhHHHHHHcC--CC-------CCCc---cchHHHH-------------------------------HHH-----
Q 000739 653 SSPFSISRWWIEVIRD--PY-------ENGD---VGAMEFT-------------------------------HKF----- 684 (1322)
Q Consensus 653 p~~f~~~~~F~~~~~~--p~-------~~g~---~~~~~~L-------------------------------~~l----- 684 (1322)
|+.|+++..|.+.... |+ ..+. ......| ..+
T Consensus 332 P~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg 411 (956)
T PRK04914 332 PDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHG 411 (956)
T ss_pred CCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcC
Confidence 9999999999754321 11 1111 0111111 111
Q ss_pred hhhhheecccccccccCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCccc
Q 000739 685 FKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPII 764 (1322)
Q Consensus 685 L~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~l 764 (1322)
..++|+|+++++|. ++|++..+.+.+++.+..+..+.... . ...... +
T Consensus 412 ~~rvm~RntR~~v~---~fp~R~~~~~~l~~~~~y~~~~~~~~---~-------~~~~~~-------------------l 459 (956)
T PRK04914 412 TGRVLFRNTRAAVK---GFPKRELHPIPLPLPEQYQTAIKVSL---E-------ARARDM-------------------L 459 (956)
T ss_pred cceEEEeccHHhhc---CCCcCceeEeecCCCHHHHHHHHHhH---H-------HHHHhh-------------------c
Confidence 23789999999985 48999999999999765433332100 0 000000 0
Q ss_pred chhhHHHHHHHHHHHHHHccCCcCCCcccccccCCCCCHHHHHHHHHHHHHHhhhhhcchhhhhhhhHhHHHHHHHhHhH
Q 000739 765 THAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQ 844 (1322)
Q Consensus 765 ~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~~~~t~eelL~~Ll~~~~~e~~e~~rkvLifsq~la~L~ile~~l~~ 844 (1322)
.. ..++.. +... ... . .. -..-+.|..++.. .. ..|+|||++...+.+.|.+.+..
T Consensus 460 ~p---e~~~~~---~~~~--------~~~--~-~~-d~Ki~~L~~~L~~---~~---~~KvLVF~~~~~t~~~L~~~L~~ 515 (956)
T PRK04914 460 YP---EQIYQE---FEDN--------ATW--W-NF-DPRVEWLIDFLKS---HR---SEKVLVICAKAATALQLEQALRE 515 (956)
T ss_pred CH---HHHHHH---Hhhh--------hhc--c-cc-CHHHHHHHHHHHh---cC---CCeEEEEeCcHHHHHHHHHHHhh
Confidence 00 011110 0000 000 0 00 0111333333332 11 46999999999999999998843
Q ss_pred H----HHHHHH--HHHHHHHHhhhccCCC--Ccce-----------------eeEecCCCCChhhhhhhhh-hhccCCCC
Q 000739 845 A----VSLYKE--AMAVVEEHSEDFRLDP--LLNI-----------------HLHHNLTEILPMVANCATE-LSQNEQHF 898 (1322)
Q Consensus 845 a----~~~y~~--~l~~~~e~~~~f~~D~--~~~l-----------------~~~~nl~dwNp~~d~QA~d-~hRIGQ~k 898 (1322)
. ...|.+ ....++..++.|+.++ .+.+ +++|++. |||+...|+++ +|||||++
T Consensus 516 ~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP-~nP~~~eQRIGR~~RiGQ~~ 594 (956)
T PRK04914 516 REGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLP-FNPDLLEQRIGRLDRIGQKH 594 (956)
T ss_pred ccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCC-CCHHHHHHHhcccccCCCCc
Confidence 2 222333 3446777778887643 2111 4566666 99999999999 99999999
Q ss_pred ceEEEEcccCCcccccchhHhhhhc
Q 000739 899 PGCSEKAFKIHSIETCDENARKCQR 923 (1322)
Q Consensus 899 ~V~VyRlit~~TiEE~i~~~~k~~~ 923 (1322)
+|.||.+++++|++|.+.++.+++.
T Consensus 595 ~V~i~~~~~~~t~~e~i~~~~~~~l 619 (956)
T PRK04914 595 DIQIHVPYLEGTAQERLFRWYHEGL 619 (956)
T ss_pred eEEEEEccCCCCHHHHHHHHHhhhc
Confidence 9999999999999999999888743
No 21
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=3.2e-38 Score=384.51 Aligned_cols=313 Identities=20% Similarity=0.337 Sum_probs=244.9
Q ss_pred CCcEEEEeCCchhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccc-----------------cchhhhccCcCEEEEeh
Q 000739 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTS-----------------IMDISELVGADIVLTTY 560 (1322)
Q Consensus 498 ~~~tLIV~P~SLl~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~-----------------~~~~~~l~~~DVVITTY 560 (1322)
.+|.||++|.+.+.+|..|+..|++ .+.+..|+|..+.+...+. ......-.++.+.+++|
T Consensus 345 ~~P~Lv~ap~sT~~nwe~e~~~wap--~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~ 422 (696)
T KOG0383|consen 345 PGPPLVVAPLSTIVNWEREFELWAP--SFYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSY 422 (696)
T ss_pred CCCceeeccCccccCCCCchhccCC--CcccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCch
Confidence 3799999999999999999999997 8999999998764321100 00112334577888888
Q ss_pred HHHhhhcccCCCCCccchhhhhhcccCCCcchhccccceeeeeccCccccCCchHHHHHHHHHhccceEEEEeccCCCCC
Q 000739 561 DVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRK 640 (1322)
Q Consensus 561 e~L~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~ 640 (1322)
++...+. +.+..+.|..+|+||||++||..|...+.+..-...+++++||||.||+
T Consensus 423 ~~~~~~~------------------------~il~~v~w~~livde~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn 478 (696)
T KOG0383|consen 423 ETIEIDQ------------------------SILFSVQWGLLIVDEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNN 478 (696)
T ss_pred hhcccCH------------------------HHHhhhhcceeEeechhhcccchhhhhhhccccccchhhhccCCcchhh
Confidence 8877653 5799999999999999999999999999999999999999999999999
Q ss_pred hhhhHhhhhccCCCCCCChhHHHHHHcCCCCCCccchHHHHHHHhhhhheecccccccccCCCCCCeEEEEEecCCHHHH
Q 000739 641 LDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEE 720 (1322)
Q Consensus 641 l~DL~sLL~FL~p~~f~~~~~F~~~~~~p~~~g~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr 720 (1322)
+.+|+++|+||.++.|.+..+|.+.|.+- ...+.++.|+.++.|.|+||.|.||.+. +|+|++.++.+.|++.|+
T Consensus 479 ~~el~~ll~flt~~~~~~~~~f~e~~~d~---~~~~~~~~l~~l~~p~~lrr~k~d~l~~--~P~Kte~i~~~~~~~~Q~ 553 (696)
T KOG0383|consen 479 LEELFNLLNFLTPGRFNSLEWFLEEFHDI---SCEEQIKKLHLLLCPHMLRRLKLDVLKP--MPLKTELIGRVELSPCQK 553 (696)
T ss_pred hHHhhhcccccCcccccchhhhhhhcchh---hHHHHHHhhccccCchhhhhhhhhhccC--CCccceeEEEEecCHHHH
Confidence 99999999999999999999999888643 3456788999999999999999999776 899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHccCCcCCCcccccccCCC
Q 000739 721 HFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSP 800 (1322)
Q Consensus 721 ~lY~~l~e~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~l~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~~~ 800 (1322)
++|+.++.+-...... -.....+++.+|.|||+|+||++... ...+....
T Consensus 554 ~~yk~~~t~n~~~l~~-----------------------------~~~~~s~~n~~mel~K~~~hpy~~~~-~e~~~~~~ 603 (696)
T KOG0383|consen 554 KYYKKILTRNWQGLLA-----------------------------GVHQYSLLNIVMELRKQCNHPYLSPL-EEPLEENG 603 (696)
T ss_pred HHHHHHHcCChHHHhh-----------------------------cchhHHHHHHHHHHHHhhcCcccCcc-ccccccch
Confidence 9999876532211100 01134688999999999999999766 22221111
Q ss_pred ----------CCHHHHHHHHHHHHHHhhhhhcchhhhhhhhHhHHHHHHHhHhHHHHHHHHHHH-----HHHHHhhhccC
Q 000739 801 ----------LSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMA-----VVEEHSEDFRL 865 (1322)
Q Consensus 801 ----------~t~eelL~~Ll~~~~~e~~e~~rkvLifsq~la~L~ile~~l~~a~~~y~~~l~-----~~~e~~~~f~~ 865 (1322)
+.+-.+|..|+.+++.+| |+|++|+|++.||||+++.+..+. .|....+ .+++..+.|+.
T Consensus 604 ~~~~~~l~k~~~k~~~l~~~~~~l~~~g----hrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~ 678 (696)
T KOG0383|consen 604 EYLGSALIKASGKLTLLLKMLKKLKSSG----HRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNA 678 (696)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc----hhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCC
Confidence 122235555665555554 999999999999999999988887 7776555 67777778874
Q ss_pred -CCCcceeeEec
Q 000739 866 -DPLLNIHLHHN 876 (1322)
Q Consensus 866 -D~~~~l~~~~n 876 (1322)
+.-+++.++-+
T Consensus 679 ~~~~~~cfllst 690 (696)
T KOG0383|consen 679 PGSNQFCFLLST 690 (696)
T ss_pred CCccceEEEeec
Confidence 33444444443
No 22
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.90 E-value=7.9e-23 Score=254.41 Aligned_cols=299 Identities=15% Similarity=0.176 Sum_probs=180.6
Q ss_pred CcEEEEeCCch-hHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccc
Q 000739 499 GATLIVCPAPI-LAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1322)
Q Consensus 499 ~~tLIV~P~SL-l~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1322)
++||||||.+. +.||.+||.+|+.-....+..|.|..+.. .....+|+||||+++.+....... .
T Consensus 299 k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I~~~tg~~k~~----------~~~~~~VvVtTYq~l~~~~~r~~~----~ 364 (732)
T TIGR00603 299 KSCLVLCTSAVSVEQWKQQFKMWSTIDDSQICRFTSDAKER----------FHGEAGVVVSTYSMVAHTGKRSYE----S 364 (732)
T ss_pred CCEEEEeCcHHHHHHHHHHHHHhcCCCCceEEEEecCcccc----------cccCCcEEEEEHHHhhcccccchh----h
Confidence 47999999875 89999999999743346677888864431 123578999999999864321000 0
Q ss_pred hhhhhhcccCCCcchhccccceeeeeccCccccCCchHHHHHHHHHhccceEEEEeccCCCCChhhhHhhhhcc-CCCCC
Q 000739 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFL-KSSPF 656 (1322)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL-~p~~f 656 (1322)
. .....|....|++||+||+|++.+ ....+.+..+.+.+||+|||||++++ +.+..+.|+ +|..|
T Consensus 365 ~----------~~l~~l~~~~~gLII~DEvH~lpA--~~fr~il~~l~a~~RLGLTATP~ReD--~~~~~L~~LiGP~vy 430 (732)
T TIGR00603 365 E----------KVMEWLTNREWGLILLDEVHVVPA--AMFRRVLTIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLY 430 (732)
T ss_pred h----------HHHHHhccccCCEEEEEccccccH--HHHHHHHHhcCcCcEEEEeecCcccC--CchhhhhhhcCCeee
Confidence 0 000134556899999999999964 34455677789999999999999875 445555554 33222
Q ss_pred CChhHHHHHHcCCCCCCccchHHHHHHHhhhhheecccccccccCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 000739 657 SISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYARE 736 (1322)
Q Consensus 657 ~~~~~F~~~~~~p~~~g~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~a~~ 736 (1322)
. ..|.+.+.. --|.+-....++|+|++.+..-|-....
T Consensus 431 e--~~~~eLi~~--------------------------------G~LA~~~~~ev~v~~t~~~~~~yl~~~~-------- 468 (732)
T TIGR00603 431 E--ANWMELQKK--------------------------------GFIANVQCAEVWCPMTPEFYREYLRENS-------- 468 (732)
T ss_pred e--cCHHHHHhC--------------------------------CccccceEEEEEecCCHHHHHHHHHhcc--------
Confidence 1 122222211 1155555667999999875444421000
Q ss_pred HHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHccCCcCCCcccccccCCCCCHHHHHHHHHHHHHH
Q 000739 737 VIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKI 816 (1322)
Q Consensus 737 ~~~~~~~~~~~r~~~g~~~~~~~~~~~l~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~~~~t~eelL~~Ll~~~~~ 816 (1322)
+ ....+ +..+|. .-+.+..|+..-
T Consensus 469 -----------------------------~--~k~~l--------~~~np~---------------K~~~~~~Li~~h-- 492 (732)
T TIGR00603 469 -----------------------------R--KRMLL--------YVMNPN---------------KFRACQFLIRFH-- 492 (732)
T ss_pred -----------------------------h--hhhHH--------hhhChH---------------HHHHHHHHHHHH--
Confidence 0 00000 111220 113344444322
Q ss_pred hhhhhcchhhhhhhhHhHHHHHHHhHhHHHHHHHHHHHHHHHHhhhccCCCC-cce-----------------eeEecCC
Q 000739 817 EGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLDPL-LNI-----------------HLHHNLT 878 (1322)
Q Consensus 817 e~~e~~rkvLifsq~la~L~ile~~l~~a~~~y~~~l~~~~e~~~~f~~D~~-~~l-----------------~~~~nl~ 878 (1322)
+..++++|||++.+..+..+...+.............|+...++|+..+. ..+ .+.+...
T Consensus 493 --e~~g~kiLVF~~~~~~l~~~a~~L~~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~ 570 (732)
T TIGR00603 493 --EQRGDKIIVFSDNVFALKEYAIKLGKPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSH 570 (732)
T ss_pred --hhcCCeEEEEeCCHHHHHHHHHHcCCceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCC
Confidence 13457999999999998888877754433334444578888888875422 222 2222322
Q ss_pred CCChhhhhhhhh-hhccCCCC-----ceEEEEcccCCcccccchhHhhhhccccc
Q 000739 879 EILPMVANCATE-LSQNEQHF-----PGCSEKAFKIHSIETCDENARKCQRVSRE 927 (1322)
Q Consensus 879 dwNp~~d~QA~d-~hRIGQ~k-----~V~VyRlit~~TiEE~i~~~~k~~~~~~~ 927 (1322)
.-++....|... +.|.|..+ +..+|.|++.+|.|+.. -+|||+-.-.
T Consensus 571 ~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~--s~~Rq~fl~~ 623 (732)
T TIGR00603 571 YGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYY--STKRQRFLVD 623 (732)
T ss_pred CCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHH--HHHHHHHHHH
Confidence 226666666666 66666544 37889999999999875 4566655443
No 23
>PRK13766 Hef nuclease; Provisional
Probab=99.75 E-value=1.2e-17 Score=216.41 Aligned_cols=368 Identities=11% Similarity=0.040 Sum_probs=193.3
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccc
Q 000739 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1322)
Q Consensus 499 ~~tLIV~P~-SLl~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1322)
+++|||||. .++.||..++.+++.....++.+++|..... ........++|+++|++.+..++..
T Consensus 59 ~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~------~r~~~~~~~~iiv~T~~~l~~~l~~-------- 124 (773)
T PRK13766 59 GKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPE------KRAELWEKAKVIVATPQVIENDLIA-------- 124 (773)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHH------HHHHHHhCCCEEEECHHHHHHHHHc--------
Confidence 579999998 6889999999998753345888888864321 0122345789999999999887531
Q ss_pred hhhhhhcccCCCcchhccccceeeeeccCccccCCchHHHHHHHHHh---ccceEEEEeccCCCCChhhhHhhhhccCCC
Q 000739 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRL---YAKHRWCITGTPIQRKLDDLYGLLRFLKSS 654 (1322)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L---~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~ 654 (1322)
..+..-.|+.||+||||++.+..+..+-+-... +..+.++|||||.++ ...+..++.-|...
T Consensus 125 --------------~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~il~lTaTP~~~-~~~i~~~~~~L~i~ 189 (773)
T PRK13766 125 --------------GRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPLVLGLTASPGSD-EEKIKEVCENLGIE 189 (773)
T ss_pred --------------CCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCEEEEEEcCCCCC-HHHHHHHHHhCCce
Confidence 112334689999999999987654443322222 244589999999876 56666666655543
Q ss_pred CCCChh----HHHHHHcCCC----CCCccchHHHHHHHhhhhheecccccccccCCCCCCeEEEEEecCCHHHHHHHHHH
Q 000739 655 PFSISR----WWIEVIRDPY----ENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQ 726 (1322)
Q Consensus 655 ~f~~~~----~F~~~~~~p~----~~g~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l 726 (1322)
...... .....+..+- .-.-+..+..++..+..++-++.+....... +++....+....+...++.++..+
T Consensus 190 ~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~-~~~~~~~~~~~~l~~~~~~~~~~l 268 (773)
T PRK13766 190 HVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGV-IVSISPDVSKKELLGLQKKLQQEI 268 (773)
T ss_pred EEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCC-cccCCCCcCHHHHHHHHHHHHHHh
Confidence 322111 1112221110 0011245567778888888777665432111 223222222223333333333332
Q ss_pred HHHHHH--HHHHHHH---HHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHccCCcCCCc----------
Q 000739 727 HETCVG--YAREVIQ---RLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSS---------- 791 (1322)
Q Consensus 727 ~e~~~~--~a~~~~~---~~~~~~~~r~~~g~~~~~~~~~~~l~~~~~~~iL~~L~rLRQiC~HP~L~~~---------- 791 (1322)
...-.. .+...+. .+...+. .+...+...+...+.+|+..+.++.-...
T Consensus 269 ~~~~~~~~~~~~~~~~~~~l~~~~~----------------~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~~ 332 (773)
T PRK13766 269 ANDDSEGYEAISILAEAMKLRHAVE----------------LLETQGVEALRRYLERLREEARSSGGSKASKRLVEDPRF 332 (773)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHH----------------HHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhCHHH
Confidence 110000 0000000 0000000 00000111222223333322221110000
Q ss_pred -----ccccccCCCCCHHHHHHHHHHHHHHhhhhhcchhhhhhhhHhHHHHHHHhHhHHHHH---HHH----------HH
Q 000739 792 -----GLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSL---YKE----------AM 853 (1322)
Q Consensus 792 -----~~~~l~~~~~t~eelL~~Ll~~~~~e~~e~~rkvLifsq~la~L~ile~~l~~a~~~---y~~----------~l 853 (1322)
..... ......-+.|..++.....+ ....++|||+++....+.|.+.+...... +.+ ..
T Consensus 333 ~~~~~~~~~~-~~~~pK~~~L~~il~~~~~~--~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~ 409 (773)
T PRK13766 333 RKAVRKAKEL-DIEHPKLEKLREIVKEQLGK--NPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQ 409 (773)
T ss_pred HHHHHHHHhc-ccCChHHHHHHHHHHHHHhc--CCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCH
Confidence 00000 01112234444555443322 24579999999999999999887432111 111 11
Q ss_pred HHHHHHhhhccCCCC-----------------cceeeEecCCCCChhhhhhhhhhhccCCCCceEEEEcccCCcccccch
Q 000739 854 AVVEEHSEDFRLDPL-----------------LNIHLHHNLTEILPMVANCATELSQNEQHFPGCSEKAFKIHSIETCDE 916 (1322)
Q Consensus 854 ~~~~e~~~~f~~D~~-----------------~~l~~~~nl~dwNp~~d~QA~d~hRIGQ~k~V~VyRlit~~TiEE~i~ 916 (1322)
..+.+..++|+.... ...++.|+.. |||....|. ++|+|+.+++.||.|++.+|+||.+.
T Consensus 410 ~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~-~s~~r~iQR--~GR~gR~~~~~v~~l~~~~t~ee~~y 486 (773)
T PRK13766 410 KEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPV-PSEIRSIQR--KGRTGRQEEGRVVVLIAKGTRDEAYY 486 (773)
T ss_pred HHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCC-CCHHHHHHH--hcccCcCCCCEEEEEEeCCChHHHHH
Confidence 233445556655432 2235666664 888765552 88999988899999999999999865
Q ss_pred hH
Q 000739 917 NA 918 (1322)
Q Consensus 917 ~~ 918 (1322)
..
T Consensus 487 ~~ 488 (773)
T PRK13766 487 WS 488 (773)
T ss_pred HH
Confidence 43
No 24
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.41 E-value=2.2e-11 Score=148.05 Aligned_cols=298 Identities=16% Similarity=0.086 Sum_probs=177.8
Q ss_pred cEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccch
Q 000739 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1322)
Q Consensus 500 ~tLIV~P~S-Ll~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~ 578 (1322)
.||||||.. ++.||.+.+.+++.. .-.+..|.|..+.- . ..+|+++||+++.+....
T Consensus 82 ~~Lvlv~~~~L~~Qw~~~~~~~~~~-~~~~g~~~~~~~~~---------~---~~~i~vat~qtl~~~~~l--------- 139 (442)
T COG1061 82 STLVLVPTKELLDQWAEALKKFLLL-NDEIGIYGGGEKEL---------E---PAKVTVATVQTLARRQLL--------- 139 (442)
T ss_pred CEEEEECcHHHHHHHHHHHHHhcCC-ccccceecCceecc---------C---CCcEEEEEhHHHhhhhhh---------
Confidence 499999986 679999999998852 12455666654321 1 157999999999885200
Q ss_pred hhhhhcccCCCcchhccccceeeeeccCccccCCchHHHHHHHHHhccce-EEEEeccCCCCChhhhHhhhhccCCCCCC
Q 000739 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKH-RWCITGTPIQRKLDDLYGLLRFLKSSPFS 657 (1322)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~-RwlLTGTPiqN~l~DL~sLL~FL~p~~f~ 657 (1322)
..+..-.|+.||+||+|++..+... +.+..+.+.+ +++|||||...+-..+.-++.++.
T Consensus 140 -------------~~~~~~~~~liI~DE~Hh~~a~~~~--~~~~~~~~~~~~LGLTATp~R~D~~~~~~l~~~~g----- 199 (442)
T COG1061 140 -------------DEFLGNEFGLIIFDEVHHLPAPSYR--RILELLSAAYPRLGLTATPEREDGGRIGDLFDLIG----- 199 (442)
T ss_pred -------------hhhcccccCEEEEEccccCCcHHHH--HHHHhhhcccceeeeccCceeecCCchhHHHHhcC-----
Confidence 1233448999999999999765433 2334455555 999999998544333333333332
Q ss_pred ChhHHHHHHcCCCCCCccchHHHHHHHhhhhheecccccccccCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHH
Q 000739 658 ISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREV 737 (1322)
Q Consensus 658 ~~~~F~~~~~~p~~~g~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~a~~~ 737 (1322)
+........+..++--|.|.....+++.++..+...|.............
T Consensus 200 -----------------------------~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~- 249 (442)
T COG1061 200 -----------------------------PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRA- 249 (442)
T ss_pred -----------------------------CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhh-
Confidence 22333332333232338888899999999999999998754331111000
Q ss_pred HHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHccCCcCCCcccccccCCCCCHHHHHHHHHHHHHHh
Q 000739 738 IQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIE 817 (1322)
Q Consensus 738 ~~~~~~~~~~r~~~g~~~~~~~~~~~l~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~~~~t~eelL~~Ll~~~~~e 817 (1322)
+ .. ....-..+.+..+ .. .....+..++..-.
T Consensus 250 ----------~--------------------~~--~~~~~~~~~~~~~-------------~~-~~~~~~~~~~~~~~-- 281 (442)
T COG1061 250 ----------R--------------------GT--LRAENEARRIAIA-------------SE-RKIAAVRGLLLKHA-- 281 (442)
T ss_pred ----------h--------------------hh--hhHHHHHHHHhhc-------------cH-HHHHHHHHHHHHhc--
Confidence 0 00 0000001111111 00 01112222221111
Q ss_pred hhhhcchhhhhhhhHhHHHHHHHhHhHH----HHHHHHHHHHHHHHhhhccCCCCcceee------EecCC---------
Q 000739 818 GEEALRKLVMALNGLAGIALIEKNLSQA----VSLYKEAMAVVEEHSEDFRLDPLLNIHL------HHNLT--------- 878 (1322)
Q Consensus 818 ~~e~~rkvLifsq~la~L~ile~~l~~a----~~~y~~~l~~~~e~~~~f~~D~~~~l~~------~~nl~--------- 878 (1322)
...++++|.........|...+... ..........+++..+.|+...+.-+.. +.+.-
T Consensus 282 ---~~~~~lif~~~~~~a~~i~~~~~~~~~~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~ 358 (442)
T COG1061 282 ---RGDKTLIFASDVEHAYEIAKLFLAPGIVEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILR 358 (442)
T ss_pred ---CCCcEEEEeccHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeC
Confidence 2368999999999999888887665 4445555567788888887755433311 22221
Q ss_pred -CCChhhhhhhhh-hhc-cCCCCc--eEEEEcccCCcccccchhHhh
Q 000739 879 -EILPMVANCATE-LSQ-NEQHFP--GCSEKAFKIHSIETCDENARK 920 (1322)
Q Consensus 879 -dwNp~~d~QA~d-~hR-IGQ~k~--V~VyRlit~~TiEE~i~~~~k 920 (1322)
.=.|..-.|... ..| ...+.. +..|-++..+|.++.+.....
T Consensus 359 ~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (442)
T COG1061 359 PTGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGEEDIARRRR 405 (442)
T ss_pred CCCcHHHHHHHhhhhccCCCCCCceEEEEEEeecCcccccchhhhhh
Confidence 345567788888 999 666665 777789999999888755444
No 25
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.29 E-value=1.8e-10 Score=142.48 Aligned_cols=99 Identities=18% Similarity=0.274 Sum_probs=69.3
Q ss_pred cEEEEeCC-chhHHHHHHHHhcCCCCCCeE-EEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccc
Q 000739 500 ATLIVCPA-PILAQWDAEITRHTRPGSLKT-CIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1322)
Q Consensus 500 ~tLIV~P~-SLl~qW~~Ei~k~~~~g~l~V-~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1322)
++|||||. .|+.||.++|.+|...+...+ .++.|.... ...+|+|+||+.+.+...
T Consensus 160 ~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~~g~~~~-------------~~~~I~VaT~qsl~~~~~--------- 217 (501)
T PHA02558 160 KVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIYSGTAKD-------------TDAPIVVSTWQSAVKQPK--------- 217 (501)
T ss_pred eEEEEECcHHHHHHHHHHHHHhccccccceeEEecCcccC-------------CCCCEEEeeHHHHhhchh---------
Confidence 79999998 688999999999863222233 445554321 347899999999865310
Q ss_pred hhhhhhcccCCCcchhccccceeeeeccCccccCCchHHHHHHHHHh-ccceEEEEeccCCC
Q 000739 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRL-YAKHRWCITGTPIQ 638 (1322)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L-~a~~RwlLTGTPiq 638 (1322)
..+ -.|++||+||||++... .....+..+ ++.++++|||||..
T Consensus 218 --------------~~~--~~~~~iIvDEaH~~~~~--~~~~il~~~~~~~~~lGLTATp~~ 261 (501)
T PHA02558 218 --------------EWF--DQFGMVIVDECHLFTGK--SLTSIITKLDNCKFKFGLTGSLRD 261 (501)
T ss_pred --------------hhc--cccCEEEEEchhcccch--hHHHHHHhhhccceEEEEeccCCC
Confidence 011 25789999999999753 234455566 57889999999954
No 26
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.27 E-value=3.5e-11 Score=127.49 Aligned_cols=124 Identities=24% Similarity=0.258 Sum_probs=72.9
Q ss_pred cEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcC--CCcc-----cccccccchhhhccCcCEEEEehHHHhhhcccCC
Q 000739 500 ATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEG--ARNS-----SLSDTSIMDISELVGADIVLTTYDVLKEDLSHDS 571 (1322)
Q Consensus 500 ~tLIV~P~-SLl~qW~~Ei~k~~~~g~l~V~vy~G--~~~~-----~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~ 571 (1322)
++|||||. +|+.||.++|..+... ...+....- .... ................++++++|..+........
T Consensus 52 ~~l~~~p~~~l~~Q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~ 130 (184)
T PF04851_consen 52 KVLIVAPNISLLEQWYDEFDDFGSE-KYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEK 130 (184)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHSTT-SEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH--
T ss_pred ceeEecCHHHHHHHHHHHHHHhhhh-hhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhccccc
Confidence 79999998 7889999999887752 222211110 0000 0000011122345678899999999988653211
Q ss_pred CCCccchhhhhhcccCCCcchhccccceeeeeccCccccCCchHHHHHHHHHhccceEEEEeccCC
Q 000739 572 DRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPI 637 (1322)
Q Consensus 572 ~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPi 637 (1322)
... .. ......+..-.+++||+||||+..+... ++.+....+.+++.|||||.
T Consensus 131 ~~~-~~----------~~~~~~~~~~~~~~vI~DEaH~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 131 KID-ES----------ARRSYKLLKNKFDLVIIDEAHHYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp ------------------GCHHGGGGSESEEEEETGGCTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred ccc-cc----------hhhhhhhccccCCEEEEehhhhcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 100 00 0011234556788999999999875543 55665688899999999995
No 27
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.24 E-value=4.4e-11 Score=119.35 Aligned_cols=110 Identities=18% Similarity=0.122 Sum_probs=76.9
Q ss_pred CcEEEEeCCchh-HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccc
Q 000739 499 GATLIVCPAPIL-AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1322)
Q Consensus 499 ~~tLIV~P~SLl-~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1322)
+.++|+||...+ .||...+.++... .+.+.++++...... .........+|+++||+.+.......
T Consensus 31 ~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~i~i~t~~~~~~~~~~~------- 97 (144)
T cd00046 31 GQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQ-----QEKLLSGKTDIVVGTPGRLLDELERL------- 97 (144)
T ss_pred CCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhH-----HHHHhcCCCCEEEECcHHHHHHHHcC-------
Confidence 689999999865 5667777777643 477777777544321 01223467899999999988764311
Q ss_pred hhhhhhcccCCCcchhccccceeeeeccCccccCCchHHHH---HHHHHhccceEEEEeccC
Q 000739 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAAT---EMALRLYAKHRWCITGTP 636 (1322)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~---kal~~L~a~~RwlLTGTP 636 (1322)
.+....|++||+||+|.+.+...... ...........+++||||
T Consensus 98 ---------------~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 98 ---------------KLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred ---------------CcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 13345799999999999998765543 233345678899999999
No 28
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.23 E-value=4.3e-11 Score=126.90 Aligned_cols=114 Identities=22% Similarity=0.227 Sum_probs=75.5
Q ss_pred CcEEEEeC-CchhHHHHHHHHhcCCCCC-CeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCcc
Q 000739 499 GATLIVCP-APILAQWDAEITRHTRPGS-LKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1322)
Q Consensus 499 ~~tLIV~P-~SLl~qW~~Ei~k~~~~g~-l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~ 576 (1322)
+++|||+| .++..||..++.++.+... ....++.+..... .........++++++||+.+.......
T Consensus 55 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~t~~~l~~~~~~~------ 123 (201)
T smart00487 55 KRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKRE-----QLRKLESGKTDILVTTPGRLLDLLEND------ 123 (201)
T ss_pred CcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcchHH-----HHHHHhcCCCCEEEeChHHHHHHHHcC------
Confidence 57999999 5678999999999886322 4455666643211 001111223499999999998865321
Q ss_pred chhhhhhcccCCCcchhccccceeeeeccCccccCC-chHHHHH-HHHHh-ccceEEEEeccCCCC
Q 000739 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES-NAAAATE-MALRL-YAKHRWCITGTPIQR 639 (1322)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN-~~Sk~~k-al~~L-~a~~RwlLTGTPiqN 639 (1322)
.+....|+++|+||+|++.+ ....... .+..+ ...+++++||||..+
T Consensus 124 ----------------~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~~~~ 173 (201)
T smart00487 124 ----------------LLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPPEE 173 (201)
T ss_pred ----------------CcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCCchh
Confidence 13445688999999999996 3333333 33444 478899999999644
No 29
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=98.89 E-value=1.3e-09 Score=126.62 Aligned_cols=130 Identities=20% Similarity=0.331 Sum_probs=89.0
Q ss_pred CcEEEEeCCch-hHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccc
Q 000739 499 GATLIVCPAPI-LAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1322)
Q Consensus 499 ~~tLIV~P~SL-l~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1322)
+.+||+|-+++ +.||+.+|..|..-..-.+..|....+.+. -...+||||||.++..--.. ....
T Consensus 346 K~clvLcts~VSVeQWkqQfk~wsti~d~~i~rFTsd~Ke~~----------~~~~gvvvsTYsMva~t~kR----S~ea 411 (776)
T KOG1123|consen 346 KSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFTSDAKERF----------PSGAGVVVTTYSMVAYTGKR----SHEA 411 (776)
T ss_pred ccEEEEecCccCHHHHHHHHHhhcccCccceEEeeccccccC----------CCCCcEEEEeeehhhhcccc----cHHH
Confidence 57899999876 799999999998644556777776655432 24577999999998753211 1011
Q ss_pred hhhhhhcccCCCcchhccccceeeeeccCccccCCchHHHHHHHHHhccceEEEEeccCCCCChhhhHhhhhccCCCCC
Q 000739 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 656 (1322)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f 656 (1322)
. ++...|....|..+||||.|.+- .....+.+.-+.+..++.||+|-+... |=..=|+||--+.+
T Consensus 412 e----------k~m~~l~~~EWGllllDEVHvvP--A~MFRRVlsiv~aHcKLGLTATLvRED--dKI~DLNFLIGPKl 476 (776)
T KOG1123|consen 412 E----------KIMDFLRGREWGLLLLDEVHVVP--AKMFRRVLSIVQAHCKLGLTATLVRED--DKITDLNFLIGPKL 476 (776)
T ss_pred H----------HHHHHHhcCeeeeEEeehhccch--HHHHHHHHHHHHHHhhccceeEEeecc--ccccccceeecchh
Confidence 1 12245788899999999999983 334444555568899999999998642 33333577754433
No 30
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=98.88 E-value=1.2e-08 Score=135.32 Aligned_cols=116 Identities=14% Similarity=0.073 Sum_probs=66.6
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEE-EEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCcc
Q 000739 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTC-IYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1322)
Q Consensus 499 ~~tLIV~P~-SLl~qW~~Ei~k~~~~g~l~V~-vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~ 576 (1322)
+++|+|||. .|+.||.++|..+..+....+. +|.. .... ....-....|+|+||.++.+.+....+.
T Consensus 464 ~rVLfLvDR~~L~~Qa~~~F~~~~~~~~~~~~~i~~i-~~L~-------~~~~~~~~~I~iaTiQtl~~~~~~~~~~--- 532 (1123)
T PRK11448 464 RRILFLVDRSALGEQAEDAFKDTKIEGDQTFASIYDI-KGLE-------DKFPEDETKVHVATVQGMVKRILYSDDP--- 532 (1123)
T ss_pred CeEEEEecHHHHHHHHHHHHHhcccccccchhhhhch-hhhh-------hhcccCCCCEEEEEHHHHHHhhhccccc---
Confidence 579999997 5889999999987542221111 2211 1000 1111235789999999997754211000
Q ss_pred chhhhhhcccCCCcchhccccceeeeeccCccccCCch----------------HHHHHHHHHhccceEEEEeccCCCC
Q 000739 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA----------------AAATEMALRLYAKHRWCITGTPIQR 639 (1322)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~----------------Sk~~kal~~L~a~~RwlLTGTPiqN 639 (1322)
. ..+.--.|++||+||||+.-... ...++.+....-..+++|||||..+
T Consensus 533 --------~------~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yFdA~~IGLTATP~r~ 597 (1123)
T PRK11448 533 --------M------DKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQLDYVSKYRRVLDYFDAVKIGLTATPALH 597 (1123)
T ss_pred --------c------ccCCCCcccEEEEECCCCCCccccccccchhccchhhhHHHHHHHHHhhcCccEEEEecCCccc
Confidence 0 00122468899999999953100 1233333332224789999999853
No 31
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=98.79 E-value=2.6e-07 Score=109.41 Aligned_cols=128 Identities=16% Similarity=0.130 Sum_probs=88.8
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccc
Q 000739 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1322)
Q Consensus 499 ~~tLIV~P~-SLl~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1322)
|..|+++|+ .|+.|=..-+.+.+.-+.-.+..+.|.-... .....+.+..|++.|-.++.+|+..
T Consensus 59 ~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~------~R~~~w~~~kVfvaTPQvveNDl~~-------- 124 (542)
T COG1111 59 GKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPE------EREELWAKKKVFVATPQVVENDLKA-------- 124 (542)
T ss_pred CeEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChH------HHHHHHhhCCEEEeccHHHHhHHhc--------
Confidence 469999996 7999999999999875567888999964431 1234567789999999999999742
Q ss_pred hhhhhhcccCCCcchhccccceeeeeccCccccCCch--HHHHHHHHHhccc-eEEEEeccCCCCChhhhHhhhhccCCC
Q 000739 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYAK-HRWCITGTPIQRKLDDLYGLLRFLKSS 654 (1322)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~a~-~RwlLTGTPiqN~l~DL~sLL~FL~p~ 654 (1322)
..+..-.+..+|+||||+--... ...++...+-... +.++||+||= ++++.+...++=|+.+
T Consensus 125 --------------Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilgLTASPG-s~~ekI~eV~~nLgIe 189 (542)
T COG1111 125 --------------GRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILGLTASPG-SDLEKIQEVVENLGIE 189 (542)
T ss_pred --------------CccChHHceEEEechhhhccCcchHHHHHHHHHHhccCceEEEEecCCC-CCHHHHHHHHHhCCcc
Confidence 12444567899999999954333 3333333333333 5889999995 4455566666656554
Q ss_pred C
Q 000739 655 P 655 (1322)
Q Consensus 655 ~ 655 (1322)
.
T Consensus 190 ~ 190 (542)
T COG1111 190 K 190 (542)
T ss_pred e
Confidence 3
No 32
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=98.61 E-value=4e-07 Score=99.03 Aligned_cols=111 Identities=21% Similarity=0.176 Sum_probs=75.2
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhc-cCcCEEEEehHHHhhhcccCCCCCcc
Q 000739 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISEL-VGADIVLTTYDVLKEDLSHDSDRHEG 576 (1322)
Q Consensus 499 ~~tLIV~P~S-Ll~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l-~~~DVVITTYe~L~~d~~~~~~~~~~ 576 (1322)
..+|||||.. ++.||...+.++.....+++..++|...... ..... ...+|+|+|.+.+...+...
T Consensus 70 ~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~iiv~T~~~l~~~l~~~------ 137 (203)
T cd00268 70 PQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDK------QIRKLKRGPHIVVATPGRLLDLLERG------ 137 (203)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHH------HHHHhcCCCCEEEEChHHHHHHHHcC------
Confidence 4699999974 7889999999987656788888888654311 11122 47899999999887654311
Q ss_pred chhhhhhcccCCCcchhccccceeeeeccCccccCCch-HHHH-HHHHHhc-cceEEEEeccCC
Q 000739 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAAT-EMALRLY-AKHRWCITGTPI 637 (1322)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~-Sk~~-kal~~L~-a~~RwlLTGTPi 637 (1322)
.+.--.+.++|+||+|.+.+.. .... .....+. ....+++|+||-
T Consensus 138 ----------------~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~ 185 (203)
T cd00268 138 ----------------KLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPKDRQTLLFSATMP 185 (203)
T ss_pred ----------------CCChhhCCEEEEeChHHhhccChHHHHHHHHHhCCcccEEEEEeccCC
Confidence 0112346789999999976543 2222 2333444 466899999997
No 33
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=98.54 E-value=4.3e-07 Score=116.16 Aligned_cols=110 Identities=17% Similarity=0.197 Sum_probs=64.9
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccc
Q 000739 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1322)
Q Consensus 499 ~~tLIV~P~S-Ll~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1322)
.++|||||.. |..||.++|.++.+. .. .+..... .......-....|+|||+.++.+.....
T Consensus 294 ~~vl~lvdR~~L~~Q~~~~f~~~~~~-~~-----~~~~s~~----~L~~~l~~~~~~iivtTiQk~~~~~~~~------- 356 (667)
T TIGR00348 294 PKVFFVVDRRELDYQLMKEFQSLQKD-CA-----ERIESIA----ELKRLLEKDDGGIIITTIQKFDKKLKEE------- 356 (667)
T ss_pred CeEEEEECcHHHHHHHHHHHHhhCCC-CC-----cccCCHH----HHHHHHhCCCCCEEEEEhHHhhhhHhhh-------
Confidence 4799999975 789999999998641 11 1110000 0001111124679999999998632110
Q ss_pred hhhhhhcccCCCcchhccccceeeeeccCccccCCchHHHHHHH-HHhccceEEEEeccCCCC
Q 000739 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMA-LRLYAKHRWCITGTPIQR 639 (1322)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal-~~L~a~~RwlLTGTPiqN 639 (1322)
...++ .......||+||||+.-.. ...+.+ ..++...++++||||+..
T Consensus 357 ------~~~~~------~~~~~~lvIvDEaHrs~~~--~~~~~l~~~~p~a~~lGfTaTP~~~ 405 (667)
T TIGR00348 357 ------EEKFP------VDRKEVVVIFDEAHRSQYG--ELAKNLKKALKNASFFGFTGTPIFK 405 (667)
T ss_pred ------hhccC------CCCCCEEEEEEcCccccch--HHHHHHHhhCCCCcEEEEeCCCccc
Confidence 00000 1112238999999986532 233444 356778999999999864
No 34
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=98.49 E-value=7.5e-07 Score=113.51 Aligned_cols=112 Identities=13% Similarity=0.216 Sum_probs=74.1
Q ss_pred cEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccch
Q 000739 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1322)
Q Consensus 500 ~tLIV~P~S-Ll~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~ 578 (1322)
.+||++|.. |..||.+++.+++++-++++.+++|........ ...........+|||.|...+....
T Consensus 286 qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~-~~~~~i~~g~~~IiVgT~~ll~~~~----------- 353 (630)
T TIGR00643 286 QVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRK-ELLETIASGQIHLVVGTHALIQEKV----------- 353 (630)
T ss_pred cEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHH-HHHHHHhCCCCCEEEecHHHHhccc-----------
Confidence 589999986 558999999999875468999999875432100 0011112346799999998876432
Q ss_pred hhhhhcccCCCcchhccccceeeeeccCccccCCchHHHHHHHHHhc---cceEEEEeccCCCCCh
Q 000739 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLY---AKHRWCITGTPIQRKL 641 (1322)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~---a~~RwlLTGTPiqN~l 641 (1322)
.+. ...+||+||+|++.- .+......... ..+.+++|+||+...+
T Consensus 354 --------------~~~--~l~lvVIDEaH~fg~--~qr~~l~~~~~~~~~~~~l~~SATp~prtl 401 (630)
T TIGR00643 354 --------------EFK--RLALVIIDEQHRFGV--EQRKKLREKGQGGFTPHVLVMSATPIPRTL 401 (630)
T ss_pred --------------ccc--ccceEEEechhhccH--HHHHHHHHhcccCCCCCEEEEeCCCCcHHH
Confidence 122 356899999999742 22222323333 5678999999987543
No 35
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=98.41 E-value=1.2e-06 Score=91.79 Aligned_cols=118 Identities=19% Similarity=0.185 Sum_probs=78.2
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhh-ccCcCEEEEehHHHhhhcccCCCCCcc
Q 000739 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISE-LVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1322)
Q Consensus 499 ~~tLIV~P~-SLl~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~-l~~~DVVITTYe~L~~d~~~~~~~~~~ 576 (1322)
+.+||++|. .++.|=.+++.+++....+++..++|...... ..... ....+|+|+|++.+...+....
T Consensus 45 ~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ilv~T~~~l~~~~~~~~----- 114 (169)
T PF00270_consen 45 ARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISE-----DQREVLSNQADILVTTPEQLLDLISNGK----- 114 (169)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHH-----HHHHHHHTTSSEEEEEHHHHHHHHHTTS-----
T ss_pred ceEEEEeecccccccccccccccccccccccccccccccccc-----cccccccccccccccCcchhhccccccc-----
Confidence 379999997 58889999999998754678888877543210 01122 2469999999999987653200
Q ss_pred chhhhhhcccCCCcchhccccceeeeeccCccccCCc-hHH-HHHHHHHh---ccceEEEEeccCCCCChhhh
Q 000739 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN-AAA-ATEMALRL---YAKHRWCITGTPIQRKLDDL 644 (1322)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~-~Sk-~~kal~~L---~a~~RwlLTGTPiqN~l~DL 644 (1322)
..+ ....+||+||+|.+-.. ... ....+..+ .....+++|+||- .++++|
T Consensus 115 ---------------~~~--~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~SAT~~-~~~~~~ 169 (169)
T PF00270_consen 115 ---------------INI--SRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLSATLP-SNVEKL 169 (169)
T ss_dssp ---------------STG--TTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEESSST-HHHHHH
T ss_pred ---------------ccc--ccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEeeCCC-hhHhhC
Confidence 012 23688999999998763 222 33333333 2367899999998 655543
No 36
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.34 E-value=5.8e-06 Score=94.26 Aligned_cols=144 Identities=17% Similarity=0.239 Sum_probs=90.5
Q ss_pred CcCEEEEehHHHhhhcccCCCCCccchhhhhhcccCCCcchhccc-cce-----e-eeeccCccccCCchH------HHH
Q 000739 552 GADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTR-IFW-----W-RICLDEAQMVESNAA------AAT 618 (1322)
Q Consensus 552 ~~DVVITTYe~L~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~-i~w-----~-rVILDEAH~IKN~~S------k~~ 618 (1322)
+.+|+.+||.+|......... .. +-|.+ +.| + +||+||+|..||..+ ++.
T Consensus 136 ~~GvlF~TYs~L~~~~~~~~~------~~-----------sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g 198 (303)
T PF13872_consen 136 KEGVLFSTYSTLISESQSGGK------YR-----------SRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTG 198 (303)
T ss_pred CCCccchhHHHHHhHHhccCC------cc-----------chHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHH
Confidence 467999999999987431100 00 11221 122 2 789999999999765 566
Q ss_pred HHHHHh----ccceEEEEeccCCCCChhhhHhhhhcc---CC-CCCCChhHHHHHHcCCCCCCccchHHHHHHHhh--hh
Q 000739 619 EMALRL----YAKHRWCITGTPIQRKLDDLYGLLRFL---KS-SPFSISRWWIEVIRDPYENGDVGAMEFTHKFFK--EI 688 (1322)
Q Consensus 619 kal~~L----~a~~RwlLTGTPiqN~l~DL~sLL~FL---~p-~~f~~~~~F~~~~~~p~~~g~~~~~~~L~~lL~--~~ 688 (1322)
.++..| +.-+.+-.|+|.... +..|- ++.-| .+ .+|.+...|...+. ++...+++.+..-|+ ..
T Consensus 199 ~avl~LQ~~LP~ARvvY~SATgase-p~Nma-Ym~RLGLWG~gtpf~~~~~f~~a~~----~gGv~amE~vA~dlKa~G~ 272 (303)
T PF13872_consen 199 IAVLELQNRLPNARVVYASATGASE-PRNMA-YMSRLGLWGPGTPFPDFDDFLEAME----KGGVGAMEMVAMDLKARGM 272 (303)
T ss_pred HHHHHHHHhCCCCcEEEecccccCC-Cceee-eeeeccccCCCCCCCCHHHHHHHHH----hcCchHHHHHHHHHHhcch
Confidence 676655 334578899999843 33332 22212 11 24666666666554 455556665555443 46
Q ss_pred heecccccccccCCCCCCeEEEEEecCCHHHHHHHHH
Q 000739 689 MCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQS 725 (1322)
Q Consensus 689 mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~ 725 (1322)
+++|.. ..-.-...++.++||+.+.++|+.
T Consensus 273 yiaR~L-------Sf~gvef~~~e~~l~~~~~~~Yd~ 302 (303)
T PF13872_consen 273 YIARQL-------SFEGVEFEIEEVPLTPEQIKMYDA 302 (303)
T ss_pred heeeec-------ccCCceEEEEEecCCHHHHHHhcC
Confidence 777744 456667889999999999999984
No 37
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=98.24 E-value=4.4e-06 Score=107.41 Aligned_cols=110 Identities=17% Similarity=0.250 Sum_probs=72.5
Q ss_pred cEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccch
Q 000739 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1322)
Q Consensus 500 ~tLIV~P~S-Ll~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~ 578 (1322)
.+||++|.. |..|+.+.+.+++++-++++.+++|........ ........+..+|||.|...+...+.
T Consensus 312 q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~-~~~~~l~~g~~~IvVgT~~ll~~~v~---------- 380 (681)
T PRK10917 312 QAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERR-EILEAIASGEADIVIGTHALIQDDVE---------- 380 (681)
T ss_pred eEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHH-HHHHHHhCCCCCEEEchHHHhcccch----------
Confidence 589999986 558999999999875458999999975421100 00111122468999999988754221
Q ss_pred hhhhhcccCCCcchhccccceeeeeccCccccCCchHHHHHHHHHh-ccceEEEEeccCCCCC
Q 000739 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRL-YAKHRWCITGTPIQRK 640 (1322)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L-~a~~RwlLTGTPiqN~ 640 (1322)
+. +..+||+||+|++.- .....+... ...+.+++|+||++..
T Consensus 381 ---------------~~--~l~lvVIDE~Hrfg~---~qr~~l~~~~~~~~iL~~SATp~prt 423 (681)
T PRK10917 381 ---------------FH--NLGLVIIDEQHRFGV---EQRLALREKGENPHVLVMTATPIPRT 423 (681)
T ss_pred ---------------hc--ccceEEEechhhhhH---HHHHHHHhcCCCCCEEEEeCCCCHHH
Confidence 22 346799999999732 222333333 2467899999998654
No 38
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.18 E-value=5.8e-06 Score=103.16 Aligned_cols=106 Identities=17% Similarity=0.167 Sum_probs=69.3
Q ss_pred CcEEEEeC-CchhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccc
Q 000739 499 GATLIVCP-APILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1322)
Q Consensus 499 ~~tLIV~P-~SLl~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1322)
+++|.++- .+|+.|=..++..|.|.++. +....+.. ...++.|.|.||.++........+
T Consensus 216 KRVLFLaDR~~Lv~QA~~af~~~~P~~~~-~n~i~~~~-------------~~~s~~i~lsTyqt~~~~~~~~~~----- 276 (875)
T COG4096 216 KRVLFLADRNALVDQAYGAFEDFLPFGTK-MNKIEDKK-------------GDTSSEIYLSTYQTMTGRIEQKED----- 276 (875)
T ss_pred heeeEEechHHHHHHHHHHHHHhCCCccc-eeeeeccc-------------CCcceeEEEeehHHHHhhhhcccc-----
Confidence 67899996 57889999999999984322 22222211 112688999999999987643211
Q ss_pred hhhhhhcccCCCcchhccccceeeeeccCccccCCchHHHHHHHHHhccceEEEEeccCCC
Q 000739 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQ 638 (1322)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiq 638 (1322)
...++..-+||+||+||||+- ..+..+.+..--...+.+||+||-.
T Consensus 277 ------------~~~~f~~g~FDlIvIDEaHRg---i~~~~~~I~dYFdA~~~gLTATP~~ 322 (875)
T COG4096 277 ------------EYRRFGPGFFDLIVIDEAHRG---IYSEWSSILDYFDAATQGLTATPKE 322 (875)
T ss_pred ------------ccccCCCCceeEEEechhhhh---HHhhhHHHHHHHHHHHHhhccCccc
Confidence 012355668999999999982 1222334444344456777999977
No 39
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.18 E-value=9.5e-06 Score=100.16 Aligned_cols=129 Identities=12% Similarity=0.139 Sum_probs=79.3
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccc
Q 000739 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1322)
Q Consensus 499 ~~tLIV~P~-SLl~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1322)
+.+|||+|. +|+.+|...+... .+++..+.|...... ............++|+++|.+.+......
T Consensus 52 ~~~lVi~P~~~L~~dq~~~l~~~----gi~~~~l~~~~~~~~-~~~i~~~~~~~~~~il~~TPe~l~~~~~~-------- 118 (470)
T TIGR00614 52 GITLVISPLISLMEDQVLQLKAS----GIPATFLNSSQSKEQ-QKNVLTDLKDGKIKLLYVTPEKCSASNRL-------- 118 (470)
T ss_pred CcEEEEecHHHHHHHHHHHHHHc----CCcEEEEeCCCCHHH-HHHHHHHHhcCCCCEEEECHHHHcCchhH--------
Confidence 468999998 5778899988764 466666666533210 00000111235689999999998653210
Q ss_pred hhhhhhcccCCCcchhc-cccceeeeeccCccccCCchH---HHHH----HHHHhccceEEEEeccCCCCChhhhHhhhh
Q 000739 578 RRFMRFQKRYPVIPTLL-TRIFWWRICLDEAQMVESNAA---AATE----MALRLYAKHRWCITGTPIQRKLDDLYGLLR 649 (1322)
Q Consensus 578 ~~~~r~~kry~~~~s~L-~~i~w~rVILDEAH~IKN~~S---k~~k----al~~L~a~~RwlLTGTPiqN~l~DL~sLL~ 649 (1322)
. ..+ ......+||+||||.+-.... ..+. ....++....+++|+||-.....|+...+.
T Consensus 119 ---~----------~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~ 185 (470)
T TIGR00614 119 ---L----------QTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFPNVPIMALTATASPSVREDILRQLN 185 (470)
T ss_pred ---H----------HHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcC
Confidence 0 112 334678999999999864321 1122 222345567899999998877777777665
Q ss_pred ccCC
Q 000739 650 FLKS 653 (1322)
Q Consensus 650 FL~p 653 (1322)
+-.|
T Consensus 186 l~~~ 189 (470)
T TIGR00614 186 LKNP 189 (470)
T ss_pred CCCC
Confidence 4443
No 40
>PRK01172 ski2-like helicase; Provisional
Probab=98.15 E-value=2e-05 Score=101.51 Aligned_cols=120 Identities=15% Similarity=0.148 Sum_probs=74.4
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccc
Q 000739 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1322)
Q Consensus 499 ~~tLIV~P~-SLl~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1322)
+.+++|+|. +|..|+.+++.++.. -+.++..+.|.... ....+..+||+|+|++.+..-..+.
T Consensus 66 ~k~v~i~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~--------~~~~~~~~dIiv~Tpek~~~l~~~~------- 129 (674)
T PRK01172 66 LKSIYIVPLRSLAMEKYEELSRLRS-LGMRVKISIGDYDD--------PPDFIKRYDVVILTSEKADSLIHHD------- 129 (674)
T ss_pred CcEEEEechHHHHHHHHHHHHHHhh-cCCeEEEEeCCCCC--------ChhhhccCCEEEECHHHHHHHHhCC-------
Confidence 357899997 578899999988653 25778777775432 2233467899999999876543210
Q ss_pred hhhhhhcccCCCcchhccccceeeeeccCccccCCch-HHHHHHH-HH---hc-cceEEEEeccCCCCChhhhHhhhhcc
Q 000739 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAATEMA-LR---LY-AKHRWCITGTPIQRKLDDLYGLLRFL 651 (1322)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~-Sk~~kal-~~---L~-a~~RwlLTGTPiqN~l~DL~sLL~FL 651 (1322)
+..--...+||+||+|++.+.. ......+ .. +. ....+++|+|+- +..++- .|+
T Consensus 130 ---------------~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~--n~~~la---~wl 189 (674)
T PRK01172 130 ---------------PYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVNPDARILALSATVS--NANELA---QWL 189 (674)
T ss_pred ---------------hhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccC--CHHHHH---HHh
Confidence 0111246799999999996532 2222222 22 22 345689999973 345443 455
Q ss_pred CCC
Q 000739 652 KSS 654 (1322)
Q Consensus 652 ~p~ 654 (1322)
+..
T Consensus 190 ~~~ 192 (674)
T PRK01172 190 NAS 192 (674)
T ss_pred CCC
Confidence 443
No 41
>PRK10689 transcription-repair coupling factor; Provisional
Probab=98.14 E-value=1.3e-05 Score=107.42 Aligned_cols=112 Identities=18% Similarity=0.180 Sum_probs=72.0
Q ss_pred CcEEEEeCCchh-HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccc
Q 000739 499 GATLIVCPAPIL-AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1322)
Q Consensus 499 ~~tLIV~P~SLl-~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1322)
+.+||+||+..+ .|..+.|.+.+..-.+++.++.|....... ............||||+|++.+...+.
T Consensus 650 ~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~-~~il~~l~~g~~dIVVgTp~lL~~~v~--------- 719 (1147)
T PRK10689 650 KQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQ-TQILAEAAEGKIDILIGTHKLLQSDVK--------- 719 (1147)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHH-HHHHHHHHhCCCCEEEECHHHHhCCCC---------
Confidence 469999999754 799999987665334677777765432100 000011112467999999987754321
Q ss_pred hhhhhhcccCCCcchhccccceeeeeccCccccCCchHHHHHHHHHhc-cceEEEEeccCCCCCh
Q 000739 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLY-AKHRWCITGTPIQRKL 641 (1322)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~-a~~RwlLTGTPiqN~l 641 (1322)
+ -...+||+||+|++... ....++.++ ....+++|+||+++.+
T Consensus 720 ----------------~--~~L~lLVIDEahrfG~~---~~e~lk~l~~~~qvLl~SATpiprtl 763 (1147)
T PRK10689 720 ----------------W--KDLGLLIVDEEHRFGVR---HKERIKAMRADVDILTLTATPIPRTL 763 (1147)
T ss_pred ----------------H--hhCCEEEEechhhcchh---HHHHHHhcCCCCcEEEEcCCCCHHHH
Confidence 1 24678999999998432 233445554 4578999999998654
No 42
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=98.14 E-value=1.8e-05 Score=96.69 Aligned_cols=118 Identities=16% Similarity=0.070 Sum_probs=73.6
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccc
Q 000739 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1322)
Q Consensus 499 ~~tLIV~P~S-Ll~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1322)
..+||++|.. |..|+.+.+..+.....+++..+.|...... ........++|+|+|.+.|...+..
T Consensus 74 ~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~-----~~~~l~~~~~IlV~Tp~rl~~~~~~-------- 140 (434)
T PRK11192 74 PRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMN-----HAEVFSENQDIVVATPGRLLQYIKE-------- 140 (434)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHH-----HHHHhcCCCCEEEEChHHHHHHHHc--------
Confidence 4689999986 7789888888776544688888887643210 0111224679999999988765421
Q ss_pred hhhhhhcccCCCcchhccccceeeeeccCccccCCch--HHHHHHHHHhc-cceEEEEeccCCCCChhh
Q 000739 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY-AKHRWCITGTPIQRKLDD 643 (1322)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~-a~~RwlLTGTPiqN~l~D 643 (1322)
..+..-...+||+||||++-... ......+..+. ....+++|+|+-...+.+
T Consensus 141 --------------~~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~ 195 (434)
T PRK11192 141 --------------ENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQD 195 (434)
T ss_pred --------------CCcCcccCCEEEEECHHHHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHH
Confidence 01222346689999999876433 22222222333 245689999985433333
No 43
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=98.12 E-value=1.5e-05 Score=104.66 Aligned_cols=112 Identities=17% Similarity=0.172 Sum_probs=71.8
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccc
Q 000739 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1322)
Q Consensus 499 ~~tLIV~P~S-Ll~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1322)
..+||+||+. |..|..+.|.+++.+-.+++.+++|....... ......-..++.||||+|...+.+.+.
T Consensus 501 ~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~-~~~~~~l~~g~~dIVIGTp~ll~~~v~--------- 570 (926)
T TIGR00580 501 KQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQ-NEILKELASGKIDILIGTHKLLQKDVK--------- 570 (926)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHH-HHHHHHHHcCCceEEEchHHHhhCCCC---------
Confidence 3589999996 55799999999876445777777775332100 000011112468999999976654321
Q ss_pred hhhhhhcccCCCcchhccccceeeeeccCccccCCchHHHHHHHHHhc-cceEEEEeccCCCCCh
Q 000739 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLY-AKHRWCITGTPIQRKL 641 (1322)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~-a~~RwlLTGTPiqN~l 641 (1322)
+. +..+||+||+|++.- .....++.+. ....+++|+||++..+
T Consensus 571 ----------------f~--~L~llVIDEahrfgv---~~~~~L~~~~~~~~vL~~SATpiprtl 614 (926)
T TIGR00580 571 ----------------FK--DLGLLIIDEEQRFGV---KQKEKLKELRTSVDVLTLSATPIPRTL 614 (926)
T ss_pred ----------------cc--cCCEEEeecccccch---hHHHHHHhcCCCCCEEEEecCCCHHHH
Confidence 22 346899999999742 2334445554 4578999999987654
No 44
>PRK02362 ski2-like helicase; Provisional
Probab=98.09 E-value=3.2e-05 Score=100.61 Aligned_cols=115 Identities=19% Similarity=0.202 Sum_probs=75.1
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccc
Q 000739 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1322)
Q Consensus 499 ~~tLIV~P~-SLl~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1322)
+.+|+|+|. +|+.|+.+++.++.+ -++++.++.|.... ....+..+||+|+|++.+..-+.+.
T Consensus 68 ~kal~i~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~--------~~~~l~~~~IiV~Tpek~~~llr~~------- 131 (737)
T PRK02362 68 GKALYIVPLRALASEKFEEFERFEE-LGVRVGISTGDYDS--------RDEWLGDNDIIVATSEKVDSLLRNG------- 131 (737)
T ss_pred CcEEEEeChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCc--------cccccCCCCEEEECHHHHHHHHhcC-------
Confidence 468999997 688999999998753 25889999886432 1233467899999999876543210
Q ss_pred hhhhhhcccCCCcchhccccceeeeeccCccccCCch-HHHHHH-HHHh----ccceEEEEeccCCCCChhhhHh
Q 000739 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAATEM-ALRL----YAKHRWCITGTPIQRKLDDLYG 646 (1322)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~-Sk~~ka-l~~L----~a~~RwlLTGTPiqN~l~DL~s 646 (1322)
. ..+ -...+||+||+|++.+.. ...... +.++ .....+++|+|+- +..|+..
T Consensus 132 -------~------~~l--~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~--n~~~la~ 189 (737)
T PRK02362 132 -------A------PWL--DDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIG--NADELAD 189 (737)
T ss_pred -------h------hhh--hhcCEEEEECccccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCC--CHHHHHH
Confidence 0 011 135799999999997543 222222 2333 2346789999973 3555543
No 45
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=98.05 E-value=3.9e-05 Score=94.46 Aligned_cols=111 Identities=15% Similarity=0.113 Sum_probs=70.6
Q ss_pred cEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccch
Q 000739 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1322)
Q Consensus 500 ~tLIV~P~S-Ll~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~ 578 (1322)
.+|||||.- |..||.+++.++...-.+++....|...... ........+||+|+|.+.|.......
T Consensus 77 ~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~-----~~~~l~~~~~IiV~TP~rL~~~~~~~-------- 143 (456)
T PRK10590 77 RALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINP-----QMMKLRGGVDVLVATPGRLLDLEHQN-------- 143 (456)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHH-----HHHHHcCCCcEEEEChHHHHHHHHcC--------
Confidence 589999985 7789999999887544567766666533210 01112346899999999986643210
Q ss_pred hhhhhcccCCCcchhccccceeeeeccCccccCCch--HHHHHHHHHhcc-ceEEEEeccCC
Q 000739 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYA-KHRWCITGTPI 637 (1322)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~a-~~RwlLTGTPi 637 (1322)
.+.--...+||+||||++-... ......+..+.. ...+++|+|+-
T Consensus 144 --------------~~~l~~v~~lViDEah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~ 191 (456)
T PRK10590 144 --------------AVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFS 191 (456)
T ss_pred --------------CcccccceEEEeecHHHHhccccHHHHHHHHHhCCccCeEEEEeCCCc
Confidence 1122346789999999976533 222333444543 34789999963
No 46
>PRK00254 ski2-like helicase; Provisional
Probab=98.01 E-value=6.7e-05 Score=97.45 Aligned_cols=115 Identities=16% Similarity=0.174 Sum_probs=75.4
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccc
Q 000739 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1322)
Q Consensus 499 ~~tLIV~P~-SLl~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1322)
+.+|+|+|. .|+.|+.+++.+|.. -++++..++|.... ....+..++|+|+|++.+..-+.+.
T Consensus 69 ~~~l~l~P~~aLa~q~~~~~~~~~~-~g~~v~~~~Gd~~~--------~~~~~~~~~IiV~Tpe~~~~ll~~~------- 132 (720)
T PRK00254 69 GKAVYLVPLKALAEEKYREFKDWEK-LGLRVAMTTGDYDS--------TDEWLGKYDIIIATAEKFDSLLRHG------- 132 (720)
T ss_pred CeEEEEeChHHHHHHHHHHHHHHhh-cCCEEEEEeCCCCC--------chhhhccCCEEEEcHHHHHHHHhCC-------
Confidence 468999997 577899999987643 25888889886432 1223467899999999876543210
Q ss_pred hhhhhhcccCCCcchhccccceeeeeccCccccCCc--hHHHHHHHHHhc-cceEEEEeccCCCCChhhhHh
Q 000739 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN--AAAATEMALRLY-AKHRWCITGTPIQRKLDDLYG 646 (1322)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~--~Sk~~kal~~L~-a~~RwlLTGTPiqN~l~DL~s 646 (1322)
. ..+. ...+||+||+|.+... .......+..+. ....+++|+|+- +..|+-.
T Consensus 133 -------~------~~l~--~l~lvViDE~H~l~~~~rg~~le~il~~l~~~~qiI~lSATl~--n~~~la~ 187 (720)
T PRK00254 133 -------S------SWIK--DVKLVVADEIHLIGSYDRGATLEMILTHMLGRAQILGLSATVG--NAEELAE 187 (720)
T ss_pred -------c------hhhh--cCCEEEEcCcCccCCccchHHHHHHHHhcCcCCcEEEEEccCC--CHHHHHH
Confidence 0 0122 4578999999999643 233333444443 356788999973 3566543
No 47
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=97.99 E-value=4e-05 Score=97.32 Aligned_cols=126 Identities=17% Similarity=0.201 Sum_probs=80.4
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccc
Q 000739 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1322)
Q Consensus 499 ~~tLIV~P~-SLl~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1322)
+.+|||+|. +|+.++...+... ++++..+++...... ............++|+++|.+.+.....
T Consensus 54 g~~lVisPl~sL~~dq~~~l~~~----gi~~~~~~s~~~~~~-~~~~~~~l~~~~~~il~~tpe~l~~~~~--------- 119 (591)
T TIGR01389 54 GLTVVISPLISLMKDQVDQLRAA----GVAAAYLNSTLSAKE-QQDIEKALVNGELKLLYVAPERLEQDYF--------- 119 (591)
T ss_pred CcEEEEcCCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHH-HHHHHHHHhCCCCCEEEEChhHhcChHH---------
Confidence 468999997 6778999998875 467777776533210 0000111223568999999998865321
Q ss_pred hhhhhhcccCCCcchhccccceeeeeccCccccCCch-------HHHHHHHHHhccceEEEEeccCCCCChhhhHhhhhc
Q 000739 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-------AAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRF 650 (1322)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~-------Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~F 650 (1322)
...+......+||+||||.+.... .+.......++....+++|+|+......|+...+.+
T Consensus 120 -------------~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~ 186 (591)
T TIGR01389 120 -------------LNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRL 186 (591)
T ss_pred -------------HHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCC
Confidence 012445578899999999986422 122233334445568999999988877777766554
Q ss_pred c
Q 000739 651 L 651 (1322)
Q Consensus 651 L 651 (1322)
-
T Consensus 187 ~ 187 (591)
T TIGR01389 187 A 187 (591)
T ss_pred C
Confidence 3
No 48
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=97.97 E-value=5.3e-05 Score=93.33 Aligned_cols=111 Identities=22% Similarity=0.172 Sum_probs=71.3
Q ss_pred cEEEEeCCc-hhHHHHHHHHhcCCC-CCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccc
Q 000739 500 ATLIVCPAP-ILAQWDAEITRHTRP-GSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1322)
Q Consensus 500 ~tLIV~P~S-Ll~qW~~Ei~k~~~~-g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1322)
.+||+||.- |..||.+++.++... ..+++..+.|....... ........+|+|+|.+.+...+..
T Consensus 74 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~-----~~~l~~~~~IvV~Tp~rl~~~l~~-------- 140 (460)
T PRK11776 74 QALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQ-----IDSLEHGAHIIVGTPGRILDHLRK-------- 140 (460)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHH-----HHHhcCCCCEEEEChHHHHHHHHc--------
Confidence 489999985 778999999887531 25788888775432110 011124679999999998765431
Q ss_pred hhhhhhcccCCCcchhccccceeeeeccCccccCCch--HHHHHHHHHhcc-ceEEEEeccCC
Q 000739 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYA-KHRWCITGTPI 637 (1322)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~a-~~RwlLTGTPi 637 (1322)
..+.--.+.+||+||||.+-+.. ......+..++. ...+++|+|+-
T Consensus 141 --------------~~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~ 189 (460)
T PRK11776 141 --------------GTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYP 189 (460)
T ss_pred --------------CCccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCc
Confidence 01222356789999999875442 333344444443 45789999973
No 49
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=97.96 E-value=4.9e-05 Score=96.70 Aligned_cols=127 Identities=14% Similarity=0.102 Sum_probs=77.8
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccc
Q 000739 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1322)
Q Consensus 499 ~~tLIV~P~-SLl~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1322)
+.+|||+|. +|+.+|.+.+... .+.+..+++....... ............+++++|.+.+..+..
T Consensus 66 g~tlVisPl~sL~~dqv~~l~~~----gi~~~~~~s~~~~~~~-~~~~~~~~~g~~~il~~tPe~l~~~~~--------- 131 (607)
T PRK11057 66 GLTLVVSPLISLMKDQVDQLLAN----GVAAACLNSTQTREQQ-LEVMAGCRTGQIKLLYIAPERLMMDNF--------- 131 (607)
T ss_pred CCEEEEecHHHHHHHHHHHHHHc----CCcEEEEcCCCCHHHH-HHHHHHHhCCCCcEEEEChHHhcChHH---------
Confidence 468999997 5778899888875 3566666654322100 000011123467899999988764310
Q ss_pred hhhhhhcccCCCcchhccccceeeeeccCccccCCch---HHHHHHHH----HhccceEEEEeccCCCCChhhhHhhhhc
Q 000739 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA---AAATEMAL----RLYAKHRWCITGTPIQRKLDDLYGLLRF 650 (1322)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~---Sk~~kal~----~L~a~~RwlLTGTPiqN~l~DL~sLL~F 650 (1322)
...+......+||+||||.+-... ...++.+. .++....+++|+|+-.....++...+.+
T Consensus 132 -------------~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l 198 (607)
T PRK11057 132 -------------LEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGL 198 (607)
T ss_pred -------------HHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCC
Confidence 012344567899999999986432 11222332 2345568999999988777777766654
Q ss_pred cC
Q 000739 651 LK 652 (1322)
Q Consensus 651 L~ 652 (1322)
-.
T Consensus 199 ~~ 200 (607)
T PRK11057 199 ND 200 (607)
T ss_pred CC
Confidence 43
No 50
>PTZ00424 helicase 45; Provisional
Probab=97.93 E-value=7.3e-05 Score=90.15 Aligned_cols=111 Identities=16% Similarity=0.075 Sum_probs=69.0
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhh-ccCcCEEEEehHHHhhhcccCCCCCcc
Q 000739 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISE-LVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1322)
Q Consensus 499 ~~tLIV~P~S-Ll~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~-l~~~DVVITTYe~L~~d~~~~~~~~~~ 576 (1322)
..+|||+|.. |..|+.+.+..+.....+.+....|...... .... ....+|+|+|.+.+...+...
T Consensus 97 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~------~~~~~~~~~~Ivv~Tp~~l~~~l~~~------ 164 (401)
T PTZ00424 97 CQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRD------DINKLKAGVHMVVGTPGRVYDMIDKR------ 164 (401)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHH------HHHHHcCCCCEEEECcHHHHHHHHhC------
Confidence 4689999975 6788888888776533455555555432110 1111 234689999999876543210
Q ss_pred chhhhhhcccCCCcchhccccceeeeeccCccccCCch--HHHHHHHHHhcc-ceEEEEeccCC
Q 000739 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYA-KHRWCITGTPI 637 (1322)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~a-~~RwlLTGTPi 637 (1322)
.+.--.+++||+||||.+.... ......+..+.. ...+++|+|+.
T Consensus 165 ----------------~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 212 (401)
T PTZ00424 165 ----------------HLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMP 212 (401)
T ss_pred ----------------CcccccccEEEEecHHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCC
Confidence 1122356789999999875432 344555555543 46788999964
No 51
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=97.92 E-value=0.00012 Score=92.03 Aligned_cols=125 Identities=16% Similarity=0.154 Sum_probs=83.3
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccc
Q 000739 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1322)
Q Consensus 499 ~~tLIV~P~S-Ll~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1322)
+.+++.+|.. |+.|=..++.....+ ..+....|....+.. ........+|++.|-.++.+++....
T Consensus 107 ~KiVF~aP~~pLv~QQ~a~~~~~~~~--~~~T~~l~~~~~~~~-----r~~i~~s~~vff~TpQil~ndL~~~~------ 173 (746)
T KOG0354|consen 107 GKVVFLAPTRPLVNQQIACFSIYLIP--YSVTGQLGDTVPRSN-----RGEIVASKRVFFRTPQILENDLKSGL------ 173 (746)
T ss_pred ceEEEeeCCchHHHHHHHHHhhccCc--ccceeeccCccCCCc-----hhhhhcccceEEeChHhhhhhccccc------
Confidence 6799999985 677777888888763 556666655332211 23455678999999999999885311
Q ss_pred hhhhhhcccCCCcchhcc-ccceeeeeccCcccc-CCch-HHHHHHHHHhc--cceEEEEeccCCCCChhhhHhhhhccC
Q 000739 578 RRFMRFQKRYPVIPTLLT-RIFWWRICLDEAQMV-ESNA-AAATEMALRLY--AKHRWCITGTPIQRKLDDLYGLLRFLK 652 (1322)
Q Consensus 578 ~~~~r~~kry~~~~s~L~-~i~w~rVILDEAH~I-KN~~-Sk~~kal~~L~--a~~RwlLTGTPiqN~l~DL~sLL~FL~ 652 (1322)
.. --.|-.+|+||||+- ||.. +...+....++ ....++||+||= ++.+...+.+.=|.
T Consensus 174 ----------------~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~qILgLTASpG-~~~~~v~~~I~~L~ 236 (746)
T KOG0354|consen 174 ----------------HDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGNQILGLTASPG-SKLEQVQNVIDNLC 236 (746)
T ss_pred ----------------ccccceEEEEEEcccccccccccHHHHHHHHHHhhhccccEEEEecCCC-ccHHHHHHHHHhhh
Confidence 11 135889999999994 4432 55555555544 336789999998 66666665554443
Q ss_pred C
Q 000739 653 S 653 (1322)
Q Consensus 653 p 653 (1322)
.
T Consensus 237 a 237 (746)
T KOG0354|consen 237 A 237 (746)
T ss_pred e
Confidence 3
No 52
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=97.90 E-value=9.4e-05 Score=92.50 Aligned_cols=112 Identities=13% Similarity=0.078 Sum_probs=70.5
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccc
Q 000739 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1322)
Q Consensus 499 ~~tLIV~P~S-Ll~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1322)
..+|||+|.. |..|+.+++..+...-.+++..+.|...... ....-...++|+|+|.+.|..-+...
T Consensus 197 ~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~-----q~~~l~~~~~IiV~TPgrL~~~l~~~------- 264 (518)
T PLN00206 197 PLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQ-----QLYRIQQGVELIVGTPGRLIDLLSKH------- 264 (518)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHH-----HHHHhcCCCCEEEECHHHHHHHHHcC-------
Confidence 4689999985 7789999998887533455554444322110 00111245799999999887654210
Q ss_pred hhhhhhcccCCCcchhccccceeeeeccCccccCCc--hHHHHHHHHHhccceEEEEeccCC
Q 000739 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN--AAAATEMALRLYAKHRWCITGTPI 637 (1322)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~--~Sk~~kal~~L~a~~RwlLTGTPi 637 (1322)
.+.--...+||+||||.+-.. .....+.+..+.....+++|+|.-
T Consensus 265 ---------------~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~~~q~l~~SATl~ 311 (518)
T PLN00206 265 ---------------DIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALSQPQVLLFSATVS 311 (518)
T ss_pred ---------------CccchheeEEEeecHHHHhhcchHHHHHHHHHhCCCCcEEEEEeeCC
Confidence 011123568999999987543 234445555666778899999963
No 53
>COG1204 Superfamily II helicase [General function prediction only]
Probab=97.89 E-value=6.2e-05 Score=97.10 Aligned_cols=122 Identities=15% Similarity=0.111 Sum_probs=83.5
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccc
Q 000739 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1322)
Q Consensus 499 ~~tLIV~P~-SLl~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1322)
++.+-|||. +|..+=.+||.+|-. -+++|.+++|.... ....+..+||+||||+.+-.-..+.
T Consensus 77 ~k~vYivPlkALa~Ek~~~~~~~~~-~GirV~~~TgD~~~--------~~~~l~~~~ViVtT~EK~Dsl~R~~------- 140 (766)
T COG1204 77 GKVVYIVPLKALAEEKYEEFSRLEE-LGIRVGISTGDYDL--------DDERLARYDVIVTTPEKLDSLTRKR------- 140 (766)
T ss_pred CcEEEEeChHHHHHHHHHHhhhHHh-cCCEEEEecCCccc--------chhhhccCCEEEEchHHhhHhhhcC-------
Confidence 578999996 688888888884432 37999999998654 4577899999999999886543221
Q ss_pred hhhhhhcccCCCcchhccccceeeeeccCccccCCc-h-----HHHHHHHHHhccceEEEEeccCCCCChhhhHhhhhcc
Q 000739 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN-A-----AAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFL 651 (1322)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~-~-----Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL 651 (1322)
+.....-+.||+||+|++... . +-.+++...-...+-++||+| +.....+-.||
T Consensus 141 ---------------~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~~~rivgLSAT-----lpN~~evA~wL 200 (766)
T COG1204 141 ---------------PSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNELIRIVGLSAT-----LPNAEEVADWL 200 (766)
T ss_pred ---------------cchhhcccEEEEeeeeecCCcccCceehhHHHHHHhhCcceEEEEEeee-----cCCHHHHHHHh
Confidence 123345678999999999887 3 333333322222466889999 33334455667
Q ss_pred CCCCC
Q 000739 652 KSSPF 656 (1322)
Q Consensus 652 ~p~~f 656 (1322)
+..++
T Consensus 201 ~a~~~ 205 (766)
T COG1204 201 NAKLV 205 (766)
T ss_pred CCccc
Confidence 66654
No 54
>PTZ00110 helicase; Provisional
Probab=97.88 E-value=8.8e-05 Score=93.24 Aligned_cols=110 Identities=12% Similarity=0.109 Sum_probs=69.5
Q ss_pred cEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccch
Q 000739 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1322)
Q Consensus 500 ~tLIV~P~S-Ll~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~ 578 (1322)
.+|||||.- |..|+.+++.++.....+++.+..|...... ....-....+|+|+|.+.|...+...
T Consensus 205 ~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~-----q~~~l~~~~~IlVaTPgrL~d~l~~~-------- 271 (545)
T PTZ00110 205 IVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRG-----QIYALRRGVEILIACPGRLIDFLESN-------- 271 (545)
T ss_pred EEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHH-----HHHHHHcCCCEEEECHHHHHHHHHcC--------
Confidence 489999985 7789999999988644566665555432210 01112245799999999887654210
Q ss_pred hhhhhcccCCCcchhccccceeeeeccCccccCCch--HHHHHHHHHhcc-ceEEEEeccC
Q 000739 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYA-KHRWCITGTP 636 (1322)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~a-~~RwlLTGTP 636 (1322)
.+.--...+||+||||++-... -+..+.+..++. ...+++|+|.
T Consensus 272 --------------~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~ 318 (545)
T PTZ00110 272 --------------VTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATW 318 (545)
T ss_pred --------------CCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 0111246789999999876543 233344444543 4568899995
No 55
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=97.84 E-value=0.00015 Score=88.44 Aligned_cols=111 Identities=17% Similarity=0.126 Sum_probs=70.8
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhh-ccCcCEEEEehHHHhhhcccCCCCCcc
Q 000739 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISE-LVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1322)
Q Consensus 499 ~~tLIV~P~S-Ll~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~-l~~~DVVITTYe~L~~d~~~~~~~~~~ 576 (1322)
..+||+||.. |..||.+++.++...-++++..+.|...... .... ....||+|+|.+.+...+..
T Consensus 84 ~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~------~~~~l~~~~~IlV~TP~~l~~~l~~------- 150 (423)
T PRK04837 84 PRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDK------QLKVLESGVDILIGTTGRLIDYAKQ------- 150 (423)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHH------HHHHhcCCCCEEEECHHHHHHHHHc-------
Confidence 3689999985 7789999988876544688888877543211 1111 23479999999998765421
Q ss_pred chhhhhhcccCCCcchhccccceeeeeccCccccCCch--HHHHHHHHHhcc---ceEEEEeccCC
Q 000739 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYA---KHRWCITGTPI 637 (1322)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~a---~~RwlLTGTPi 637 (1322)
..+.--...+||+||||++-+.. ......+..+.. ...+++|+|+-
T Consensus 151 ---------------~~~~l~~v~~lViDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~ 201 (423)
T PRK04837 151 ---------------NHINLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLS 201 (423)
T ss_pred ---------------CCcccccccEEEEecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCC
Confidence 01222356789999999875533 222333334432 23578899964
No 56
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=97.78 E-value=0.0002 Score=88.69 Aligned_cols=113 Identities=15% Similarity=0.112 Sum_probs=70.8
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccc
Q 000739 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1322)
Q Consensus 499 ~~tLIV~P~S-Ll~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1322)
..+|||+|.. |..||.+++..+...-++++..++|....... .........+|+|+|.+.|.......
T Consensus 163 ~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~----~~~~~~~~~~Iiv~TP~~Ll~~~~~~------- 231 (475)
T PRK01297 163 PRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQ----LKQLEARFCDILVATPGRLLDFNQRG------- 231 (475)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHH----HHHHhCCCCCEEEECHHHHHHHHHcC-------
Confidence 4689999984 77899999888765446788888876432100 01111245799999999986532110
Q ss_pred hhhhhhcccCCCcchhccccceeeeeccCccccCCch--HHHHHHHHHhc---cceEEEEeccCC
Q 000739 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY---AKHRWCITGTPI 637 (1322)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~---a~~RwlLTGTPi 637 (1322)
.+.--...+||+||+|.+.+.. ....+.+..+. ....+++|+|..
T Consensus 232 ---------------~~~l~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~ 281 (475)
T PRK01297 232 ---------------EVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFT 281 (475)
T ss_pred ---------------CcccccCceEEechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecC
Confidence 0111245689999999986543 22333333332 235789999953
No 57
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=97.73 E-value=0.00026 Score=89.54 Aligned_cols=113 Identities=14% Similarity=0.110 Sum_probs=71.0
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccc
Q 000739 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1322)
Q Consensus 499 ~~tLIV~P~S-Ll~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1322)
..+|||||.- |..|+.+++.++...-.+++..++|...... ........+||||+|.+.|...+...
T Consensus 85 ~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~-----q~~~l~~~~dIiV~TP~rL~~~l~~~------- 152 (572)
T PRK04537 85 PRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDK-----QRELLQQGVDVIIATPGRLIDYVKQH------- 152 (572)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHH-----HHHHHhCCCCEEEECHHHHHHHHHhc-------
Confidence 4699999985 7789999999987654678888777543210 00111235799999999887654210
Q ss_pred hhhhhhcccCCCcchhccccceeeeeccCccccCCch--HHHHHHHHHhc---cceEEEEeccCC
Q 000739 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY---AKHRWCITGTPI 637 (1322)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~---a~~RwlLTGTPi 637 (1322)
..+..-...+|||||||.+-... ......+..+. ....+++|+|.-
T Consensus 153 --------------~~~~l~~v~~lViDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~ 203 (572)
T PRK04537 153 --------------KVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLS 203 (572)
T ss_pred --------------cccchhheeeeEecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCcc
Confidence 00112245679999999875432 22333334444 345788999963
No 58
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=97.70 E-value=0.00032 Score=89.43 Aligned_cols=110 Identities=15% Similarity=0.144 Sum_probs=69.0
Q ss_pred cEEEEeCCc-hhHHHHHHHHhcCCC-CCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccc
Q 000739 500 ATLIVCPAP-ILAQWDAEITRHTRP-GSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1322)
Q Consensus 500 ~tLIV~P~S-Ll~qW~~Ei~k~~~~-g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1322)
.+||+||.. |..||.+++.++... ..+++..++|...... .........+|||+|.+.+...+..
T Consensus 76 ~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~-----q~~~l~~~~~IVVgTPgrl~d~l~r-------- 142 (629)
T PRK11634 76 QILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDV-----QLRALRQGPQIVVGTPGRLLDHLKR-------- 142 (629)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHH-----HHHHhcCCCCEEEECHHHHHHHHHc--------
Confidence 589999985 778999998877531 2577777666543210 0111123578999999998765421
Q ss_pred hhhhhhcccCCCcchhccccceeeeeccCccccCCch--HHHHHHHHHhcc-ceEEEEeccC
Q 000739 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYA-KHRWCITGTP 636 (1322)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~a-~~RwlLTGTP 636 (1322)
..+.--....|||||||.+-+.. ......+..++. ...+++|+|.
T Consensus 143 --------------~~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~ 190 (629)
T PRK11634 143 --------------GTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190 (629)
T ss_pred --------------CCcchhhceEEEeccHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccC
Confidence 01222245679999999765433 334445555654 3468899995
No 59
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=97.65 E-value=0.00015 Score=89.87 Aligned_cols=112 Identities=18% Similarity=0.242 Sum_probs=80.0
Q ss_pred cEEEEeCCchh-HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccch
Q 000739 500 ATLIVCPAPIL-AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1322)
Q Consensus 500 ~tLIV~P~SLl-~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~ 578 (1322)
-+...+|+.++ .|=...+.+|++|-+++|....|.-+.... ......-..+..|+||=|+..+...+..
T Consensus 313 Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r-~~~l~~l~~G~~~ivVGTHALiQd~V~F--------- 382 (677)
T COG1200 313 QAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKAR-KEILEQLASGEIDIVVGTHALIQDKVEF--------- 382 (677)
T ss_pred eeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHH-HHHHHHHhCCCCCEEEEcchhhhcceee---------
Confidence 35778899877 699999999999777999999997554211 1111223345689999999998865431
Q ss_pred hhhhhcccCCCcchhccccceeeeeccCccccCCchHHHHHHHHHh-c-cceEEEEeccCCCCChh
Q 000739 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRL-Y-AKHRWCITGTPIQRKLD 642 (1322)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L-~-a~~RwlLTGTPiqN~l~ 642 (1322)
-+..+||+||=|++. ...-..++.- . ..|.+++|+|||+..+.
T Consensus 383 ------------------~~LgLVIiDEQHRFG---V~QR~~L~~KG~~~Ph~LvMTATPIPRTLA 427 (677)
T COG1200 383 ------------------HNLGLVIIDEQHRFG---VHQRLALREKGEQNPHVLVMTATPIPRTLA 427 (677)
T ss_pred ------------------cceeEEEEecccccc---HHHHHHHHHhCCCCCcEEEEeCCCchHHHH
Confidence 135689999999985 2333334333 3 46999999999999874
No 60
>PRK09401 reverse gyrase; Reviewed
Probab=97.62 E-value=0.00042 Score=93.47 Aligned_cols=88 Identities=14% Similarity=0.115 Sum_probs=56.5
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhh--ccCcCEEEEehHHHhhhcccCCCCCc
Q 000739 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISE--LVGADIVLTTYDVLKEDLSHDSDRHE 575 (1322)
Q Consensus 499 ~~tLIV~P~S-Ll~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~--l~~~DVVITTYe~L~~d~~~~~~~~~ 575 (1322)
..+|||+|+. |+.||.+.+.++.....+++.+..|.......... ..... ...++|+|+|.+.+.+.+.
T Consensus 124 ~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~-~~~~~l~~~~~~IlV~Tp~rL~~~~~------- 195 (1176)
T PRK09401 124 KKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKE-EFLERLKEGDFDILVTTSQFLSKNFD------- 195 (1176)
T ss_pred CeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHH-HHHHHHhcCCCCEEEECHHHHHHHHH-------
Confidence 4689999985 77899999999886444555444433211000000 01111 2458999999999887542
Q ss_pred cchhhhhhcccCCCcchhccccceeeeeccCccccC
Q 000739 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVE 611 (1322)
Q Consensus 576 ~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IK 611 (1322)
.+....++.||+||||++-
T Consensus 196 -----------------~l~~~~~~~lVvDEaD~~L 214 (1176)
T PRK09401 196 -----------------ELPKKKFDFVFVDDVDAVL 214 (1176)
T ss_pred -----------------hccccccCEEEEEChHHhh
Confidence 1334458899999999864
No 61
>PRK05580 primosome assembly protein PriA; Validated
Probab=97.61 E-value=0.0004 Score=89.42 Aligned_cols=107 Identities=12% Similarity=0.004 Sum_probs=65.7
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccc
Q 000739 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1322)
Q Consensus 499 ~~tLIV~P~S-Ll~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1322)
+.+||++|.. +..||.+.+.+++ ..++.+++|....... ............+|||.|.+.+-.
T Consensus 191 ~~vLvLvPt~~L~~Q~~~~l~~~f---g~~v~~~~s~~s~~~r-~~~~~~~~~g~~~IVVgTrsal~~------------ 254 (679)
T PRK05580 191 KQALVLVPEIALTPQMLARFRARF---GAPVAVLHSGLSDGER-LDEWRKAKRGEAKVVIGARSALFL------------ 254 (679)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHh---CCCEEEEECCCCHHHH-HHHHHHHHcCCCCEEEeccHHhcc------------
Confidence 4699999985 7799999999987 3688889886432100 000011122457899999875531
Q ss_pred hhhhhhcccCCCcchhccccceeeeeccCccccCC--chHHHH--HHH----HHhccceEEEEeccCCC
Q 000739 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES--NAAAAT--EMA----LRLYAKHRWCITGTPIQ 638 (1322)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN--~~Sk~~--kal----~~L~a~~RwlLTGTPiq 638 (1322)
++ -+..+||+||+|...- .....+ +.+ ........+++|+||..
T Consensus 255 ---------------p~--~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~~~~~~il~SATps~ 306 (679)
T PRK05580 255 ---------------PF--KNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKLENIPVVLGSATPSL 306 (679)
T ss_pred ---------------cc--cCCCEEEEECCCccccccCcCCCCcHHHHHHHHhhccCCCEEEEcCCCCH
Confidence 22 2467999999997532 211111 111 12334567889999963
No 62
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=97.58 E-value=2.6e-05 Score=100.53 Aligned_cols=107 Identities=12% Similarity=-0.034 Sum_probs=77.4
Q ss_pred HHhhhhhcchhhhhhhhHhHHHHHHHhHhHHHHHHHHH--HHHHHHHhhhccC-CCC----cceeeEecCC---------
Q 000739 815 KIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEA--MAVVEEHSEDFRL-DPL----LNIHLHHNLT--------- 878 (1322)
Q Consensus 815 ~~e~~e~~rkvLifsq~la~L~ile~~l~~a~~~y~~~--l~~~~e~~~~f~~-D~~----~~l~~~~nl~--------- 878 (1322)
....++.+.++++|+|+...++.++..+.........- .....+-...|.. |-+ .....+.||.
T Consensus 1214 ~iK~k~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~t~d~~dc~~~fk~I~clll~~~~~~~GLNL~eA~Hvfl~e 1293 (1394)
T KOG0298|consen 1214 YIKFKNEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGETEDFDDCIICFKSIDCLLLFVSKGSKGLNLIEATHVFLVE 1293 (1394)
T ss_pred HHhccCcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccCCcchhhhhhhcccceEEEEEeccCcccccHHhhhhhheec
Confidence 44566777899999999999999998776554333322 2233333333432 211 1113344544
Q ss_pred -CCChhhhhhhhh-hhccCCCCceEEEEcccCCcccccchhHhhh
Q 000739 879 -EILPMVANCATE-LSQNEQHFPGCSEKAFKIHSIETCDENARKC 921 (1322)
Q Consensus 879 -dwNp~~d~QA~d-~hRIGQ~k~V~VyRlit~~TiEE~i~~~~k~ 921 (1322)
=.||..+.||+. +|||||++++.|||+|..+||||.|+.+.+-
T Consensus 1294 PiLN~~~E~QAigRvhRiGQ~~pT~V~~fiv~~TvEe~Il~l~~~ 1338 (1394)
T KOG0298|consen 1294 PILNPGDEAQAIGRVHRIGQKRPTFVHRFIVNETVEENILSLITS 1338 (1394)
T ss_pred cccCchHHHhhhhhhhhcccccchhhhhhhhccchHHHHHHHhhh
Confidence 689999999999 9999999999999999999999999988765
No 63
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.57 E-value=0.0016 Score=79.60 Aligned_cols=107 Identities=22% Similarity=0.312 Sum_probs=71.4
Q ss_pred cEEEEeCCc-hhHHHHHHHHhcCCCCCC-eEEEEcCCCcccccccccchhhhcc-CcCEEEEehHHHhhhcccCCCCCcc
Q 000739 500 ATLIVCPAP-ILAQWDAEITRHTRPGSL-KTCIYEGARNSSLSDTSIMDISELV-GADIVLTTYDVLKEDLSHDSDRHEG 576 (1322)
Q Consensus 500 ~tLIV~P~S-Ll~qW~~Ei~k~~~~g~l-~V~vy~G~~~~~~~~~~~~~~~~l~-~~DVVITTYe~L~~d~~~~~~~~~~ 576 (1322)
.+||++|.- |..|-..++.++.....+ .+++|-|..... +...+. ..||||+|-..+...+...
T Consensus 167 ~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~-------Q~~~l~~gvdiviaTPGRl~d~le~g------ 233 (519)
T KOG0331|consen 167 IVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGP-------QLRDLERGVDVVIATPGRLIDLLEEG------ 233 (519)
T ss_pred eEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccH-------HHHHHhcCCcEEEeCChHHHHHHHcC------
Confidence 599999997 778999999999875555 456666665432 334444 4899999999988766421
Q ss_pred chhhhhhcccCCCcchhccccceeeeeccCccccCCc--hHHHHHHHHHh-ccce-EEEEecc
Q 000739 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN--AAAATEMALRL-YAKH-RWCITGT 635 (1322)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~--~Sk~~kal~~L-~a~~-RwlLTGT 635 (1322)
.+.--...++|||||.++-.. ..+.-+.+..+ +... .++-|+|
T Consensus 234 ----------------~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saT 280 (519)
T KOG0331|consen 234 ----------------SLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSAT 280 (519)
T ss_pred ----------------CccccceeEEEeccHHhhhccccHHHHHHHHHhcCCCcccEEEEeee
Confidence 122334568999999987443 36666666666 3332 4444444
No 64
>PRK13767 ATP-dependent helicase; Provisional
Probab=97.57 E-value=0.00063 Score=90.09 Aligned_cols=113 Identities=18% Similarity=0.081 Sum_probs=66.0
Q ss_pred CcEEEEeCC-chhHHHHHH-------HHhcC-----CCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhh
Q 000739 499 GATLIVCPA-PILAQWDAE-------ITRHT-----RPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKE 565 (1322)
Q Consensus 499 ~~tLIV~P~-SLl~qW~~E-------i~k~~-----~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~ 565 (1322)
..+|+|+|. .|..|+.+. +.+++ ..+.+++.+++|....... ........+|+|||.+.+..
T Consensus 85 ~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r-----~~~l~~~p~IlVtTPE~L~~ 159 (876)
T PRK13767 85 VYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEK-----QKMLKKPPHILITTPESLAI 159 (876)
T ss_pred eEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHH-----HHHHhCCCCEEEecHHHHHH
Confidence 358999997 466676653 33332 1126788999997543110 01112357999999999875
Q ss_pred hcccCCCCCccchhhhhhcccCCCcchhccccceeeeeccCccccCCch--HHHHHHHHHh---c--cceEEEEeccC
Q 000739 566 DLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRL---Y--AKHRWCITGTP 636 (1322)
Q Consensus 566 d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L---~--a~~RwlLTGTP 636 (1322)
.+... .....|. ...+||+||+|.+-+.. ......+.+| . ...+|++|+|+
T Consensus 160 ll~~~------------------~~~~~l~--~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl 217 (876)
T PRK13767 160 LLNSP------------------KFREKLR--TVKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATI 217 (876)
T ss_pred HhcCh------------------hHHHHHh--cCCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEeccc
Confidence 43210 0001122 34679999999987532 3333333333 2 35689999996
No 65
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=97.57 E-value=0.00033 Score=91.73 Aligned_cols=113 Identities=19% Similarity=0.189 Sum_probs=72.2
Q ss_pred cEEEEeCCchhH-HHHHHHHhcCCC--CCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCcc
Q 000739 500 ATLIVCPAPILA-QWDAEITRHTRP--GSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1322)
Q Consensus 500 ~tLIV~P~SLl~-qW~~Ei~k~~~~--g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~ 576 (1322)
..|+|-|..-+. .=.+.+.++... +.+++.+|+|....... ..-.-...+|+||+|++|-..+-...+
T Consensus 117 ~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r-----~~~~~~pp~IllTNpdMLh~~llr~~~---- 187 (851)
T COG1205 117 RALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEER-----RAIIRNPPDILLTNPDMLHYLLLRNHD---- 187 (851)
T ss_pred cEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHH-----HHHHhCCCCEEEeCHHHHHHHhccCcc----
Confidence 689999987554 335556665542 25789999998653210 122345689999999999774421111
Q ss_pred chhhhhhcccCCCcchhccccceeeeeccCccccCCch-HHHHHHHHHhccc--------eEEEEecc
Q 000739 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAATEMALRLYAK--------HRWCITGT 635 (1322)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~-Sk~~kal~~L~a~--------~RwlLTGT 635 (1322)
+ .....-++.+||+||+|..+... |..+-.+++|.-. .-++.|+|
T Consensus 188 ---------~-----~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT 241 (851)
T COG1205 188 ---------A-----WLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSAT 241 (851)
T ss_pred ---------h-----HHHHHhcCcEEEEecceeccccchhHHHHHHHHHHHHHhccCCCceEEEEecc
Confidence 0 01122238999999999987654 7777777776422 34777777
No 66
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=97.56 E-value=0.00071 Score=80.76 Aligned_cols=125 Identities=10% Similarity=0.007 Sum_probs=69.3
Q ss_pred cEEEEeCC-chhHHHHHHHHhcC----CCCCCeEEEEcCCCccc---cc-------cccc-----chhhhccCcCEEEEe
Q 000739 500 ATLIVCPA-PILAQWDAEITRHT----RPGSLKTCIYEGARNSS---LS-------DTSI-----MDISELVGADIVLTT 559 (1322)
Q Consensus 500 ~tLIV~P~-SLl~qW~~Ei~k~~----~~g~l~V~vy~G~~~~~---~~-------~~~~-----~~~~~l~~~DVVITT 559 (1322)
++++|+|. ++..+|.+.+.+++ +.....+..+.|..... .. .... .........+|++|+
T Consensus 41 ~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~ 120 (357)
T TIGR03158 41 DTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTN 120 (357)
T ss_pred CEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEec
Confidence 57999997 57788888888776 22357788888862211 00 0000 001112467899999
Q ss_pred hHHHhhhcccCCCCCccchhhhhhcccCCCcchhccccceeeeeccCccccCCchH-------HHHHHHHHhc-cceEEE
Q 000739 560 YDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAA-------AATEMALRLY-AKHRWC 631 (1322)
Q Consensus 560 Ye~L~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~S-------k~~kal~~L~-a~~Rwl 631 (1322)
++.+..-.... ..++........-...+||+||+|.+..... .....+.... ..+.++
T Consensus 121 p~~l~~llr~~--------------~~~~~~~~~~~~~~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~ 186 (357)
T TIGR03158 121 PDIFVYLTRFA--------------YIDRGDIAAGFYTKFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVF 186 (357)
T ss_pred HHHHHHHHhhh--------------ccCcccchhhhhcCCCEEEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEE
Confidence 99986532110 0000000001123678999999999875331 1122222222 357899
Q ss_pred EeccCCC
Q 000739 632 ITGTPIQ 638 (1322)
Q Consensus 632 LTGTPiq 638 (1322)
+||||-.
T Consensus 187 lSAT~~~ 193 (357)
T TIGR03158 187 LSATPDP 193 (357)
T ss_pred EecCCCH
Confidence 9999854
No 67
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=97.46 E-value=0.00094 Score=86.85 Aligned_cols=112 Identities=17% Similarity=0.172 Sum_probs=69.2
Q ss_pred cEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccch
Q 000739 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1322)
Q Consensus 500 ~tLIV~P~S-Ll~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~ 578 (1322)
..|||+|.- |..|=..++.++.. ..+++.+|+|...... ...-....+|||||.+++...+-.. . .
T Consensus 83 ~aL~l~PtraLa~q~~~~l~~l~~-~~i~v~~~~Gdt~~~~------r~~i~~~~~IivtTPd~L~~~~L~~-----~-~ 149 (742)
T TIGR03817 83 TALYLAPTKALAADQLRAVRELTL-RGVRPATYDGDTPTEE------RRWAREHARYVLTNPDMLHRGILPS-----H-A 149 (742)
T ss_pred EEEEEcChHHHHHHHHHHHHHhcc-CCeEEEEEeCCCCHHH------HHHHhcCCCEEEEChHHHHHhhccc-----h-h
Confidence 689999985 66777778888763 3689999999754210 1111234789999999886432100 0 0
Q ss_pred hhhhhcccCCCcchhccccceeeeeccCccccCCc-hHHHHHHHHHhc--------cceEEEEeccC
Q 000739 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN-AAAATEMALRLY--------AKHRWCITGTP 636 (1322)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~-~Sk~~kal~~L~--------a~~RwlLTGTP 636 (1322)
++ ...|. +-.+||+||||.+... .+.....+.+|+ ....+++|+|-
T Consensus 150 -------~~---~~~l~--~l~~vViDEah~~~g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi 204 (742)
T TIGR03817 150 -------RW---ARFLR--RLRYVVIDECHSYRGVFGSHVALVLRRLRRLCARYGASPVFVLASATT 204 (742)
T ss_pred -------HH---HHHHh--cCCEEEEeChhhccCccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCC
Confidence 00 01122 3478999999998652 344444554442 13578999994
No 68
>COG4889 Predicted helicase [General function prediction only]
Probab=97.39 E-value=0.00023 Score=88.54 Aligned_cols=115 Identities=21% Similarity=0.177 Sum_probs=61.3
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccc-----c---------------chhhhccCcCEEE
Q 000739 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTS-----I---------------MDISELVGADIVL 557 (1322)
Q Consensus 499 ~~tLIV~P~-SLl~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~-----~---------------~~~~~l~~~DVVI 557 (1322)
..+|.++|+ +|+.|=.+|...-..- .++........+...+... . ........--||.
T Consensus 207 ~~iL~LvPSIsLLsQTlrew~~~~~l-~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvF 285 (1518)
T COG4889 207 ARILFLVPSISLLSQTLREWTAQKEL-DFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVF 285 (1518)
T ss_pred hheEeecchHHHHHHHHHHHhhccCc-cceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEE
Confidence 468999998 6888877766544321 2333333332222111000 0 0001112234888
Q ss_pred EehHHHhhhcccCCCCCccchhhhhhcccCCCcchhccccceeeeeccCccccCCch------HHHHH--HHHHhccceE
Q 000739 558 TTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA------AAATE--MALRLYAKHR 629 (1322)
Q Consensus 558 TTYe~L~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~------Sk~~k--al~~L~a~~R 629 (1322)
.||..+-.-... ...---.|++||+||||+--... |..++ .-..+++..|
T Consensus 286 sTYQSl~~i~eA----------------------Qe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kR 343 (1518)
T COG4889 286 STYQSLPRIKEA----------------------QEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKR 343 (1518)
T ss_pred EcccchHHHHHH----------------------HHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHh
Confidence 888877653210 11233469999999999853221 11111 1123678889
Q ss_pred EEEeccC
Q 000739 630 WCITGTP 636 (1322)
Q Consensus 630 wlLTGTP 636 (1322)
+-+|+||
T Consensus 344 lYmTATP 350 (1518)
T COG4889 344 LYMTATP 350 (1518)
T ss_pred hhcccCc
Confidence 9999999
No 69
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.29 E-value=0.00092 Score=83.26 Aligned_cols=107 Identities=11% Similarity=0.015 Sum_probs=68.0
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccc
Q 000739 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1322)
Q Consensus 499 ~~tLIV~P~-SLl~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1322)
+.+||++|. +|..|+.+.|++.+ ..++.++||.-...... ...........+|||+|+..+-.
T Consensus 26 ~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~-~~~~~~~~g~~~IVVGTrsalf~------------ 89 (505)
T TIGR00595 26 KSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKL-QAWRKVKNGEILVVIGTRSALFL------------ 89 (505)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHH-HHHHHHHcCCCCEEECChHHHcC------------
Confidence 469999998 57899999999887 36788888754321000 00011123467899999886632
Q ss_pred hhhhhhcccCCCcchhccccceeeeeccCccccC--CchHH------HHHHHHHhccceEEEEeccCCC
Q 000739 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVE--SNAAA------ATEMALRLYAKHRWCITGTPIQ 638 (1322)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IK--N~~Sk------~~kal~~L~a~~RwlLTGTPiq 638 (1322)
++. +.++||+||.|... ..... .+...........+++|+||..
T Consensus 90 ---------------p~~--~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsl 141 (505)
T TIGR00595 90 ---------------PFK--NLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSL 141 (505)
T ss_pred ---------------ccc--CCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCH
Confidence 222 45899999999853 22221 1222233456678999999973
No 70
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=97.14 E-value=0.0026 Score=83.76 Aligned_cols=130 Identities=16% Similarity=0.186 Sum_probs=72.7
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccch--hhhccCcCEEEEehHHHhhhcccCCCCCc
Q 000739 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMD--ISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1322)
Q Consensus 499 ~~tLIV~P~-SLl~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~--~~~l~~~DVVITTYe~L~~d~~~~~~~~~ 575 (1322)
+.+|||+|. +|+.+....+... .++...+.|...... ...... ......++|+++|-+.+...-.
T Consensus 501 GiTLVISPLiSLmqDQV~~L~~~----GI~Aa~L~s~~s~~e-q~~ilr~l~s~~g~~~ILyvTPERL~~~d~------- 568 (1195)
T PLN03137 501 GITLVISPLVSLIQDQIMNLLQA----NIPAASLSAGMEWAE-QLEILQELSSEYSKYKLLYVTPEKVAKSDS------- 568 (1195)
T ss_pred CcEEEEeCHHHHHHHHHHHHHhC----CCeEEEEECCCCHHH-HHHHHHHHHhcCCCCCEEEEChHHhhcchH-------
Confidence 468999997 5665455555442 466666655432110 000000 1122578999999998864200
Q ss_pred cchhhhhhcccCCCcchhcc-ccceeeeeccCccccCCchH---HHHHHH----HHhccceEEEEeccCCCCChhhhHhh
Q 000739 576 GDRRFMRFQKRYPVIPTLLT-RIFWWRICLDEAQMVESNAA---AATEMA----LRLYAKHRWCITGTPIQRKLDDLYGL 647 (1322)
Q Consensus 576 ~~~~~~r~~kry~~~~s~L~-~i~w~rVILDEAH~IKN~~S---k~~kal----~~L~a~~RwlLTGTPiqN~l~DL~sL 647 (1322)
..+.. ..+. .....+|||||||.+-.... ..++.+ ..+.....++||+|...+...|+...
T Consensus 569 ----ll~~L-------~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~ 637 (1195)
T PLN03137 569 ----LLRHL-------ENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQA 637 (1195)
T ss_pred ----HHHHH-------HhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHH
Confidence 00000 0011 12357899999999854321 122222 23456678999999988877887776
Q ss_pred hhcc
Q 000739 648 LRFL 651 (1322)
Q Consensus 648 L~FL 651 (1322)
|.+.
T Consensus 638 L~l~ 641 (1195)
T PLN03137 638 LGLV 641 (1195)
T ss_pred cCCC
Confidence 6543
No 71
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=97.11 E-value=0.0014 Score=78.03 Aligned_cols=120 Identities=13% Similarity=0.045 Sum_probs=67.8
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccc----cccc-c--------chhhhccCcCEEEEehHHHh
Q 000739 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSL----SDTS-I--------MDISELVGADIVLTTYDVLK 564 (1322)
Q Consensus 499 ~~tLIV~P~-SLl~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~----~~~~-~--------~~~~~l~~~DVVITTYe~L~ 564 (1322)
+.+++|+|. +++.|+.+.+..++. . ++..++|...... .... . .........+|+++|.+.+.
T Consensus 30 ~~ii~v~P~~~L~~q~~~~l~~~f~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~ 106 (358)
T TIGR01587 30 DRVIIALPTRATINAMYRRAKELFG--S-NLGLLHSSSSFKRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVL 106 (358)
T ss_pred CeEEEEeehHHHHHHHHHHHHHHhC--c-ccEEeeccHHHHHHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHH
Confidence 468999996 688999999999874 2 4555555422100 0000 0 00111235679999999887
Q ss_pred hhcccCCCCCccchhhhhhcccCCCcchhccccceeeeeccCccccCCch-HHHHHHHHHhc--cceEEEEeccCC
Q 000739 565 EDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAATEMALRLY--AKHRWCITGTPI 637 (1322)
Q Consensus 565 ~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~-Sk~~kal~~L~--a~~RwlLTGTPi 637 (1322)
..+.... ....-.+..+.-.+||+||+|.+.... ......+..+. ....+++|+|+-
T Consensus 107 ~~~~~~~----------------~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~~~~~~~i~~SATlp 166 (358)
T TIGR01587 107 KSVFGEF----------------GHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLKDNDVPILLMSATLP 166 (358)
T ss_pred HHHhccc----------------chHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEecCch
Confidence 6543100 000012333344789999999987542 22333333343 345688999964
No 72
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=97.03 E-value=0.0028 Score=65.46 Aligned_cols=101 Identities=19% Similarity=0.138 Sum_probs=56.3
Q ss_pred CcEEEEeCCchhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccch
Q 000739 499 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1322)
Q Consensus 499 ~~tLIV~P~SLl~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~ 578 (1322)
+.+||+.|.-++. +|+.+... ...+.+-.... ........-|-+++|.++...+..
T Consensus 34 ~rvLvL~PTRvva---~em~~aL~--~~~~~~~t~~~----------~~~~~g~~~i~vMc~at~~~~~~~--------- 89 (148)
T PF07652_consen 34 LRVLVLAPTRVVA---EEMYEALK--GLPVRFHTNAR----------MRTHFGSSIIDVMCHATYGHFLLN--------- 89 (148)
T ss_dssp --EEEEESSHHHH---HHHHHHTT--TSSEEEESTTS----------S----SSSSEEEEEHHHHHHHHHT---------
T ss_pred CeEEEecccHHHH---HHHHHHHh--cCCcccCceee----------eccccCCCcccccccHHHHHHhcC---------
Confidence 5899999998774 45555553 34432221111 112234556888999998775421
Q ss_pred hhhhhcccCCCcchhccccceeeeeccCccccCCchHHHHHHHHH-hc---cceEEEEeccCCC
Q 000739 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALR-LY---AKHRWCITGTPIQ 638 (1322)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~-L~---a~~RwlLTGTPiq 638 (1322)
+....+|++||+||+|.. ++.|-+++-... +. ....+.+|+||--
T Consensus 90 --------------p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~~~~i~mTATPPG 138 (148)
T PF07652_consen 90 --------------PCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGEAKVIFMTATPPG 138 (148)
T ss_dssp --------------SSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS-EEEEEESS-TT
T ss_pred --------------cccccCccEEEEeccccC-CHHHHhhheeHHHhhhccCeeEEEEeCCCCC
Confidence 234568999999999984 455555444332 21 2357899999964
No 73
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=96.85 E-value=0.005 Score=78.94 Aligned_cols=118 Identities=17% Similarity=0.140 Sum_probs=65.0
Q ss_pred cEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCC-CcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccc
Q 000739 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGA-RNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1322)
Q Consensus 500 ~tLIV~P~S-Ll~qW~~Ei~k~~~~g~l~V~vy~G~-~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1322)
.++||+|.. |..||.+++..++..-++++.+..+. ...... .........+||+++|.+.|..++-...
T Consensus 113 ~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~~~~s~~~~~~---~~~rr~~y~~dIvygTp~~LgfDyLrD~------ 183 (762)
T TIGR03714 113 GAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEYD---ANEKRKIYNSDIVYTTNSALGFDYLIDN------ 183 (762)
T ss_pred ceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEEECCCCccccC---HHHHHHhCCCCEEEECchhhhhhHHHHH------
Confidence 589999986 66777777655443225666554332 211110 0011222468999999999965432100
Q ss_pred hhhhhhcccCCCcchhccccceeeeeccCccccCCchHHHHHHHHHhccceEEEEeccCCCCChhhhHhhh
Q 000739 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLL 648 (1322)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL 648 (1322)
+... ...+......++|+||||.+--.. +...+++||.|-.. .++|...
T Consensus 184 ---l~~~------~~~~~~r~l~~~IVDEaDsILiDe-----------artpliisg~~~~~--~~~y~~~ 232 (762)
T TIGR03714 184 ---LASN------KEGKFLRPFNYVIVDEVDSVLLDS-----------AQTPLVISGAPRVQ--SNLYHIA 232 (762)
T ss_pred ---hhcc------hhhcccccCcEEEEecHhhHhhcc-----------CcCCeeeeCCCccc--hHHHHHH
Confidence 0000 001122356789999999874322 44568889877533 3466554
No 74
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=96.84 E-value=0.0046 Score=81.06 Aligned_cols=113 Identities=20% Similarity=0.204 Sum_probs=72.4
Q ss_pred CcEEEEeCCchhH-HHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccc
Q 000739 499 GATLIVCPAPILA-QWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1322)
Q Consensus 499 ~~tLIV~P~SLl~-qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1322)
+-+-|+||++|+. |=.+-|..-+.+-.++|-+..--.... ........-..++.||||=|+..|.+++..
T Consensus 644 KQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~k-E~~~il~~la~G~vDIvIGTHrLL~kdv~F-------- 714 (1139)
T COG1197 644 KQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAK-EQKEILKGLAEGKVDIVIGTHRLLSKDVKF-------- 714 (1139)
T ss_pred CeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHH-HHHHHHHHHhcCCccEEEechHhhCCCcEE--------
Confidence 4588999999884 555555444432234444443322111 011111223346789999999999987632
Q ss_pred hhhhhhcccCCCcchhccccceeeeeccCccccCCchHHHHHHHHHhcc-ceEEEEeccCCCCChh
Q 000739 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYA-KHRWCITGTPIQRKLD 642 (1322)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a-~~RwlLTGTPiqN~l~ 642 (1322)
-+-.+||+||=|+..= +.-..++.|++ .+.+-||+|||+..|.
T Consensus 715 -------------------kdLGLlIIDEEqRFGV---k~KEkLK~Lr~~VDvLTLSATPIPRTL~ 758 (1139)
T COG1197 715 -------------------KDLGLLIIDEEQRFGV---KHKEKLKELRANVDVLTLSATPIPRTLN 758 (1139)
T ss_pred -------------------ecCCeEEEechhhcCc---cHHHHHHHHhccCcEEEeeCCCCcchHH
Confidence 1345899999999763 34566777875 5889999999999874
No 75
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=96.80 E-value=0.018 Score=75.49 Aligned_cols=159 Identities=12% Similarity=0.055 Sum_probs=81.6
Q ss_pred CcEEEEeCCc-hhHHHHHHHH-----hcCC----CCCCeEEEEcCCCcccccccccc-h---hhhc-----cCcCEEEEe
Q 000739 499 GATLIVCPAP-ILAQWDAEIT-----RHTR----PGSLKTCIYEGARNSSLSDTSIM-D---ISEL-----VGADIVLTT 559 (1322)
Q Consensus 499 ~~tLIV~P~S-Ll~qW~~Ei~-----k~~~----~g~l~V~vy~G~~~~~~~~~~~~-~---~~~l-----~~~DVVITT 559 (1322)
..+|||||.. +.....+=+. .|+. ...++..+|...++.+....... . .... ..-.|+|+|
T Consensus 90 ~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~n 169 (986)
T PRK15483 90 FKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLIN 169 (986)
T ss_pred cEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccccccccChHHHHHHHhccccCCCceEEEEEe
Confidence 4799999984 4444433322 3332 22477888886542110000000 1 1111 135699999
Q ss_pred hHHHhhhcccCCCCCccchhhhhhcccCCCcchhccccceeeeeccCccccCCchHHHHHHHHHhccceEEEEeccCCC-
Q 000739 560 YDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQ- 638 (1322)
Q Consensus 560 Ye~L~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiq- 638 (1322)
-+.|.++.... ...+.... ... . .|-...+-.=-.||+||+|++... .+..+++..|+..+.+--|+|--.
T Consensus 170 iqa~n~~~~~~---~~~D~~l~--~g~-~-~p~~~i~~~~PivIiDEPh~~~~~-~k~~~~i~~lnpl~~lrysAT~~~~ 241 (986)
T PRK15483 170 AGMLNSASMTR---DDYDQTLL--GGF-T-SPVDALAATRPVVIIDEPHRFPRD-NKFYQAIEALKPQMIIRFGATFPDI 241 (986)
T ss_pred hHHhccccccc---chhhhhhc--cCC-C-ChHHHHHhCCCEEEEECCCCCCcc-hHHHHHHHhcCcccEEEEeeecCCc
Confidence 99997642100 00000000 000 0 000011111226899999999653 456688899999998889999754
Q ss_pred ------C--ChhhhHhhhhccCCCCCCChhHHHHHHcCCC
Q 000739 639 ------R--KLDDLYGLLRFLKSSPFSISRWWIEVIRDPY 670 (1322)
Q Consensus 639 ------N--~l~DL~sLL~FL~p~~f~~~~~F~~~~~~p~ 670 (1322)
| ...|.++++-=|+ ....|...+...+
T Consensus 242 ~~~~g~~~~~~~d~~NlvY~Ld-----avdAyn~~LVK~I 276 (986)
T PRK15483 242 TEGKGKNKCTRKDYYNLQFDLN-----AVDSFNDGLVKGV 276 (986)
T ss_pred cccccccccccccccCceeecC-----HHHHHHhCCcceE
Confidence 1 1224566555443 3456665554433
No 76
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.62 E-value=0.0049 Score=73.62 Aligned_cols=96 Identities=15% Similarity=0.168 Sum_probs=70.6
Q ss_pred CCcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCcc
Q 000739 498 TGATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1322)
Q Consensus 498 ~~~tLIV~P~S-Ll~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~ 576 (1322)
+-+.+||+|.- |..|-.++|.+|++..++.|+...|.+.......+..........||+|+|-+.|..++....
T Consensus 215 ~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k----- 289 (620)
T KOG0350|consen 215 RLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTK----- 289 (620)
T ss_pred ceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCC-----
Confidence 34689999986 557999999999998889999999987654333333333344567999999999998775311
Q ss_pred chhhhhhcccCCCcchhccccceeeeeccCccccCCch
Q 000739 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA 614 (1322)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~ 614 (1322)
.+.--+-.++|+|||.++-+..
T Consensus 290 ----------------~f~Lk~LrfLVIDEADRll~qs 311 (620)
T KOG0350|consen 290 ----------------SFDLKHLRFLVIDEADRLLDQS 311 (620)
T ss_pred ----------------CcchhhceEEEechHHHHHHHH
Confidence 2333456689999999987654
No 77
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=96.58 E-value=0.0078 Score=77.31 Aligned_cols=136 Identities=15% Similarity=0.197 Sum_probs=83.3
Q ss_pred cEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccch
Q 000739 500 ATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1322)
Q Consensus 500 ~tLIV~P~-SLl~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~ 578 (1322)
.+.-|+|. +|..--.+-+.+-+.+-+++|.-+.|.... ...+..+.+|+|||-+.+----.+. .++
T Consensus 166 KiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD~ql--------~~tei~~tqiiVTTPEKwDvvTRk~----~~d- 232 (1230)
T KOG0952|consen 166 KIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGDTQL--------TKTEIADTQIIVTTPEKWDVVTRKS----VGD- 232 (1230)
T ss_pred eEEEEechHHHHHHHHHHHhhhcccccceEEEecCcchh--------hHHHHHhcCEEEecccceeeeeeee----ccc-
Confidence 57888996 554444444443333337999999997654 4455888999999977542100000 011
Q ss_pred hhhhhcccCCCcchhccccceeeeeccCccccCCchH-----HHHHHHHH----hccceEEEEeccCCCCChhhhHhhhh
Q 000739 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAA-----AATEMALR----LYAKHRWCITGTPIQRKLDDLYGLLR 649 (1322)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~S-----k~~kal~~----L~a~~RwlLTGTPiqN~l~DL~sLL~ 649 (1322)
+.|. -.-.+||+||.|.+..... -.+++++. ...-+-++||+| +-.+-.+-.
T Consensus 233 -------------~~l~-~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessqs~IRivgLSAT-----lPN~eDvA~ 293 (1230)
T KOG0952|consen 233 -------------SALF-SLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQSMIRIVGLSAT-----LPNYEDVAR 293 (1230)
T ss_pred -------------hhhh-hheeeEEeeeehhhcCcccchHHHHHHHHHHHHHhhhhheEEEEeecc-----CCCHHHHHH
Confidence 0111 1235899999999988764 34444432 234567899999 333455678
Q ss_pred ccCCCCCCChhHHHHHHc
Q 000739 650 FLKSSPFSISRWWIEVIR 667 (1322)
Q Consensus 650 FL~p~~f~~~~~F~~~~~ 667 (1322)
||+..++..-..|...|.
T Consensus 294 fL~vn~~~glfsFd~~yR 311 (1230)
T KOG0952|consen 294 FLRVNPYAGLFSFDQRYR 311 (1230)
T ss_pred HhcCCCccceeeeccccc
Confidence 898887766666666554
No 78
>PHA02653 RNA helicase NPH-II; Provisional
Probab=96.54 E-value=0.089 Score=67.71 Aligned_cols=104 Identities=11% Similarity=0.078 Sum_probs=59.0
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCC---CCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCC
Q 000739 499 GATLIVCPAP-ILAQWDAEITRHTRP---GSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 574 (1322)
Q Consensus 499 ~~tLIV~P~S-Ll~qW~~Ei~k~~~~---g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~ 574 (1322)
++++|++|.- +..|...++.+...- ...++.+..|...... ........+++|.|.......
T Consensus 223 ~~ilvt~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~------~~t~~k~~~Ilv~T~~L~l~~-------- 288 (675)
T PHA02653 223 RPIVLSLPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPDEL------INTNPKPYGLVFSTHKLTLNK-------- 288 (675)
T ss_pred cEEEEECcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcchHH------hhcccCCCCEEEEeCcccccc--------
Confidence 5799999984 557888888764421 1345555555432110 011222568888874321110
Q ss_pred ccchhhhhhcccCCCcchhccccceeeeeccCccccCCchHHHHHHHHHhc-c-ceEEEEeccCC
Q 000739 575 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLY-A-KHRWCITGTPI 637 (1322)
Q Consensus 575 ~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~-a-~~RwlLTGTPi 637 (1322)
| -....||+||||..-...-.....++.+. . ...+++|+|+-
T Consensus 289 -------------------L--~~v~~VVIDEaHEr~~~~DllL~llk~~~~~~rq~ILmSATl~ 332 (675)
T PHA02653 289 -------------------L--FDYGTVIIDEVHEHDQIGDIIIAVARKHIDKIRSLFLMTATLE 332 (675)
T ss_pred -------------------c--ccCCEEEccccccCccchhHHHHHHHHhhhhcCEEEEEccCCc
Confidence 1 24678999999997554433333333332 2 35799999973
No 79
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=96.53 E-value=0.0064 Score=82.46 Aligned_cols=88 Identities=17% Similarity=0.176 Sum_probs=55.8
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCCe---EEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCC
Q 000739 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLK---TCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 574 (1322)
Q Consensus 499 ~~tLIV~P~S-Ll~qW~~Ei~k~~~~g~l~---V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~ 574 (1322)
..+|||+|.. |..|+.+++.+++..-+++ +..|+|....... ........-..+||||+|...+...+.
T Consensus 122 ~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~-~~~~~~l~~~~~dIlV~Tp~rL~~~~~------ 194 (1171)
T TIGR01054 122 KRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEK-KEFMERIENGDFDILITTTMFLSKNYD------ 194 (1171)
T ss_pred CeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHH-HHHHHHHhcCCCCEEEECHHHHHHHHH------
Confidence 4689999985 6789999999987532333 3357775322100 000000112358999999998876432
Q ss_pred ccchhhhhhcccCCCcchhccccceeeeeccCccccCC
Q 000739 575 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES 612 (1322)
Q Consensus 575 ~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN 612 (1322)
.+.. .++++|+||||.+-.
T Consensus 195 ------------------~l~~-~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 195 ------------------ELGP-KFDFIFVDDVDALLK 213 (1171)
T ss_pred ------------------HhcC-CCCEEEEeChHhhhh
Confidence 1222 789999999998754
No 80
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=96.17 E-value=0.045 Score=71.21 Aligned_cols=39 Identities=15% Similarity=-0.060 Sum_probs=23.5
Q ss_pred eeeeeccCccccCCchHHHHHHHHHh--cc----ceEEEEeccCC
Q 000739 599 WWRICLDEAQMVESNAAAATEMALRL--YA----KHRWCITGTPI 637 (1322)
Q Consensus 599 w~rVILDEAH~IKN~~Sk~~kal~~L--~a----~~RwlLTGTPi 637 (1322)
=.++||||||..........+.+..+ .. ...+++|+|+-
T Consensus 172 v~~LVLDEADLd~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p 216 (844)
T TIGR02621 172 DALIVHDEAHLEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSR 216 (844)
T ss_pred ceEEEEehhhhccccHHHHHHHHHhcccCcccccceEEEEecCCC
Confidence 45899999994333333333333332 22 36789999984
No 81
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=95.93 E-value=0.04 Score=71.35 Aligned_cols=125 Identities=17% Similarity=0.146 Sum_probs=78.0
Q ss_pred cEEEEeCCchhHH-HHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccch
Q 000739 500 ATLIVCPAPILAQ-WDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1322)
Q Consensus 500 ~tLIV~P~SLl~q-W~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~ 578 (1322)
.+|-|.|.--+.+ =..-+..|...-++.|.+-||....... .......+||+|||-++|.-.+...
T Consensus 75 ~~lYIsPLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er-----~r~~~~PPdILiTTPEsL~lll~~~-------- 141 (814)
T COG1201 75 YALYISPLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEK-----QKMLKNPPHILITTPESLAILLNSP-------- 141 (814)
T ss_pred EEEEeCcHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHh-----hhccCCCCcEEEeChhHHHHHhcCH--------
Confidence 5788888654422 2222222222226888888987554322 1222345899999999998765320
Q ss_pred hhhhhcccCCCcchhccccceeeeeccCccccCCch--HHHHHHHHHhc----cceEEEEeccCCCCChhhhHhhhhccC
Q 000739 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY----AKHRWCITGTPIQRKLDDLYGLLRFLK 652 (1322)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~----a~~RwlLTGTPiqN~l~DL~sLL~FL~ 652 (1322)
.....|..+. .||+||.|.+.+.+ ++.+-.+.+|. --.|++||+| +.+..-+.+||.
T Consensus 142 ----------~~r~~l~~vr--~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~~~qRIGLSAT-----V~~~~~varfL~ 204 (814)
T COG1201 142 ----------KFRELLRDVR--YVIVDEIHALAESKRGVQLALSLERLRELAGDFQRIGLSAT-----VGPPEEVAKFLV 204 (814)
T ss_pred ----------HHHHHhcCCc--EEEeehhhhhhccccchhhhhhHHHHHhhCcccEEEeehhc-----cCCHHHHHHHhc
Confidence 0112344444 59999999998665 67777776663 2569999999 445666677776
Q ss_pred CC
Q 000739 653 SS 654 (1322)
Q Consensus 653 p~ 654 (1322)
..
T Consensus 205 g~ 206 (814)
T COG1201 205 GF 206 (814)
T ss_pred CC
Confidence 64
No 82
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=95.45 E-value=0.058 Score=70.09 Aligned_cols=102 Identities=18% Similarity=0.130 Sum_probs=62.3
Q ss_pred CcEEEEeCCchh----HHHHHHHHhcCCCCCCeEEEEcCCCc-ccccccccchhhhccCcCEEEEehHHHhhhcccCCCC
Q 000739 499 GATLIVCPAPIL----AQWDAEITRHTRPGSLKTCIYEGARN-SSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDR 573 (1322)
Q Consensus 499 ~~tLIV~P~SLl----~qW~~Ei~k~~~~g~l~V~vy~G~~~-~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~ 573 (1322)
+.++||+|+..+ ..|...+.++. ++++.++.|... .. ........||++.|...+.-|+-...-.
T Consensus 120 ~~v~VvTpt~~LA~qd~e~~~~l~~~l---Gl~v~~i~g~~~~~~-------~r~~~y~~dIvygT~~~l~fDyLrd~~~ 189 (790)
T PRK09200 120 KGVHLITVNDYLAKRDAEEMGQVYEFL---GLTVGLNFSDIDDAS-------EKKAIYEADIIYTTNSELGFDYLRDNLA 189 (790)
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHhhc---CCeEEEEeCCCCcHH-------HHHHhcCCCEEEECCccccchhHHhccc
Confidence 468999999866 36888888887 699988887543 11 1223456899999976664332110000
Q ss_pred CccchhhhhhcccCCCcchhccccceeeeeccCccccCCchHHHHHHHHHhccceEEEEeccC
Q 000739 574 HEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTP 636 (1322)
Q Consensus 574 ~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTP 636 (1322)
.. +.....-...++|+|||+.+-=.. +..-+++||.|
T Consensus 190 ~~---------------~~~~~~r~~~~~IvDEaDsiLiDe-----------a~tpliisg~~ 226 (790)
T PRK09200 190 DS---------------KEDKVQRPLNYAIIDEIDSILLDE-----------AQTPLIISGKP 226 (790)
T ss_pred cc---------------hhhhcccccceEEEeccccceecc-----------CCCceeeeCCC
Confidence 00 011233467899999999874322 23346777754
No 83
>PRK14701 reverse gyrase; Provisional
Probab=95.38 E-value=0.042 Score=76.63 Aligned_cols=87 Identities=15% Similarity=0.203 Sum_probs=55.9
Q ss_pred cEEEEeCCc-hhHHHHHHHHhcCCCC--CCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCcc
Q 000739 500 ATLIVCPAP-ILAQWDAEITRHTRPG--SLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1322)
Q Consensus 500 ~tLIV~P~S-Ll~qW~~Ei~k~~~~g--~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~ 576 (1322)
.+|||+|+. |+.|..+.+..++..- .+++..++|....... ...........+||+|+|-+.+...+.
T Consensus 124 ~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~-~~~~~~l~~g~~dILV~TPgrL~~~~~-------- 194 (1638)
T PRK14701 124 KCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEK-EEFLERIENGDFDILVTTAQFLARNFP-------- 194 (1638)
T ss_pred eEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHH-HHHHHHHhcCCCCEEEECCchhHHhHH--------
Confidence 689999984 7789999999876421 3567778876432100 000001112368999999987765331
Q ss_pred chhhhhhcccCCCcchhccccceeeeeccCccccC
Q 000739 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVE 611 (1322)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IK 611 (1322)
.+....++++|+||||.+-
T Consensus 195 ----------------~l~~~~i~~iVVDEAD~ml 213 (1638)
T PRK14701 195 ----------------EMKHLKFDFIFVDDVDAFL 213 (1638)
T ss_pred ----------------HHhhCCCCEEEEECceecc
Confidence 1222568899999999873
No 84
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=95.08 E-value=0.094 Score=72.21 Aligned_cols=119 Identities=18% Similarity=0.153 Sum_probs=69.1
Q ss_pred CcEEEEeCCc-hhHHHHHHHHh-----------cC-CCCCCeEEEEcCCCcccccccccchhhhc-cCcCEEEEehHHHh
Q 000739 499 GATLIVCPAP-ILAQWDAEITR-----------HT-RPGSLKTCIYEGARNSSLSDTSIMDISEL-VGADIVLTTYDVLK 564 (1322)
Q Consensus 499 ~~tLIV~P~S-Ll~qW~~Ei~k-----------~~-~~g~l~V~vy~G~~~~~~~~~~~~~~~~l-~~~DVVITTYe~L~ 564 (1322)
..+|+|+|.- |..|=.++++. +. ....++|.+++|...... ....+ ...||+|||.+.+.
T Consensus 38 ~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~e------R~rll~~ppdILVTTPEsL~ 111 (1490)
T PRK09751 38 SRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQE------RSKLTRNPPDILITTPESLY 111 (1490)
T ss_pred CEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHH------HHHHhcCCCCEEEecHHHHH
Confidence 4689999985 43333333321 11 112588999999754321 11111 35799999999987
Q ss_pred hhcccCCCCCccchhhhhhcccCCCcchhccccceeeeeccCccccCCc--hHHHHHHHHHhc-----cceEEEEeccCC
Q 000739 565 EDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN--AAAATEMALRLY-----AKHRWCITGTPI 637 (1322)
Q Consensus 565 ~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~--~Sk~~kal~~L~-----a~~RwlLTGTPi 637 (1322)
.-+... . ...|.. -.+||+||+|.+.+. .+.....+.+|. ...+|++|+|=
T Consensus 112 ~LLtsk------~-------------r~~L~~--Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~QrIgLSATI- 169 (1490)
T PRK09751 112 LMLTSR------A-------------RETLRG--VETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSAQRIGLSATV- 169 (1490)
T ss_pred HHHhhh------h-------------hhhhcc--CCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCCeEEEEEeeC-
Confidence 643210 0 012333 357999999999764 244444444442 24689999995
Q ss_pred CCChhhhHh
Q 000739 638 QRKLDDLYG 646 (1322)
Q Consensus 638 qN~l~DL~s 646 (1322)
++++++-.
T Consensus 170 -~n~eevA~ 177 (1490)
T PRK09751 170 -RSASDVAA 177 (1490)
T ss_pred -CCHHHHHH
Confidence 33565543
No 85
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=94.78 E-value=0.079 Score=68.01 Aligned_cols=89 Identities=17% Similarity=0.140 Sum_probs=54.6
Q ss_pred CcEEEEeCCchh----HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCC
Q 000739 499 GATLIVCPAPIL----AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 574 (1322)
Q Consensus 499 ~~tLIV~P~SLl----~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~ 574 (1322)
+.++||+|+..+ ..|...+.+++ ++++.+..|..... ........||++.|...|.-++-...-.
T Consensus 98 ~~V~VvTpt~~LA~qdae~~~~l~~~L---GLsv~~i~g~~~~~-------~r~~~y~~dIvyGT~~rlgfDyLrd~~~- 166 (745)
T TIGR00963 98 KGVHVVTVNDYLAQRDAEWMGQVYRFL---GLSVGLILSGMSPE-------ERREAYACDITYGTNNELGFDYLRDNMA- 166 (745)
T ss_pred CCEEEEcCCHHHHHHHHHHHHHHhccC---CCeEEEEeCCCCHH-------HHHHhcCCCEEEECCCchhhHHHhcccc-
Confidence 358999999866 35777777766 58888777653321 1122234799999988775544211100
Q ss_pred ccchhhhhhcccCCCcchhccccceeeeeccCccccCC
Q 000739 575 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES 612 (1322)
Q Consensus 575 ~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN 612 (1322)
.....+..-...++|+||+|++--
T Consensus 167 --------------~~~~~~~~r~l~~aIIDEaDs~LI 190 (745)
T TIGR00963 167 --------------HSKEEKVQRPFHFAIIDEVDSILI 190 (745)
T ss_pred --------------cchhhhhccccceeEeecHHHHhH
Confidence 000123344678999999998753
No 86
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=94.26 E-value=0.1 Score=60.73 Aligned_cols=126 Identities=12% Similarity=0.038 Sum_probs=65.5
Q ss_pred eEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHccCC
Q 000739 707 EECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHP 786 (1322)
Q Consensus 707 ~e~vv~v~LS~~Qr~lY~~l~e~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~l~~~~~~~iL~~L~rLRQiC~HP 786 (1322)
.++.+.++|+..|+++|+.+.......+.+.++... .....++.........+-..+.+|+.+|+||
T Consensus 4 ~~y~lP~pmt~~QKdl~e~iislh~~~il~~~~~~~-------------~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP 70 (297)
T PF11496_consen 4 GEYYLPTPMTSFQKDLYEQIISLHYSDILKFCETND-------------SSESIDSLLDESLVQSMELLIENLRLVANHP 70 (297)
T ss_dssp SEEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTT-------------T--HHHH-------HHHHHHHHHHHHHHH-G
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHHHHHHHcccC-------------ccccccchhhhhhHHHHHHHHHHHHHhccCc
Confidence 367889999999999999988765544444332100 0000000001122355667788999999999
Q ss_pred cCCCcccccccCCCCC----------HHHHHHHHHHHHHH-hhhhhcchhhhhhhhHhHHHHHHHhHhHH
Q 000739 787 QVGSSGLRSLQQSPLS----------MDEILMVLIGKTKI-EGEEALRKLVMALNGLAGIALIEKNLSQA 845 (1322)
Q Consensus 787 ~L~~~~~~~l~~~~~t----------~eelL~~Ll~~~~~-e~~e~~rkvLifsq~la~L~ile~~l~~a 845 (1322)
+|.-.-..+..-..+. .-.+|..|++.+.. .-.+...+++|.++....+++||..+-..
T Consensus 71 ~LlvdH~mPk~ll~~e~~~~~~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk 140 (297)
T PF11496_consen 71 SLLVDHYMPKQLLLSEPAEWLAYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGK 140 (297)
T ss_dssp GGT--TT--S-S-STTHHHHHHHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTS
T ss_pred cccccccCccccccchHHHHHHHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccC
Confidence 9853322111101111 22356666665521 11233368899999999999999876543
No 87
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.18 E-value=0.76 Score=50.34 Aligned_cols=36 Identities=22% Similarity=0.262 Sum_probs=22.3
Q ss_pred ceeeeeccCccccCCchHHHHHHHHH-hccceEEEEeccCCC
Q 000739 598 FWWRICLDEAQMVESNAAAATEMALR-LYAKHRWCITGTPIQ 638 (1322)
Q Consensus 598 ~w~rVILDEAH~IKN~~Sk~~kal~~-L~a~~RwlLTGTPiq 638 (1322)
.|+.||+|||-.+.-+. ++.- ..+..+++|-|=|-|
T Consensus 192 ~~d~vIvDEAsq~~e~~-----~l~~l~~~~~~~vlvGD~~Q 228 (236)
T PF13086_consen 192 KFDVVIVDEASQITEPE-----ALIPLSRAPKRIVLVGDPKQ 228 (236)
T ss_dssp --SEEEETTGGGS-HHH-----HHHHHTTTBSEEEEEE-TTS
T ss_pred cCCEEEEeCCCCcchHH-----HHHHHHHhCCEEEEECChhh
Confidence 79999999998765332 2222 344489999998766
No 88
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=93.97 E-value=0.2 Score=67.25 Aligned_cols=114 Identities=18% Similarity=0.141 Sum_probs=66.3
Q ss_pred cEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccch
Q 000739 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1322)
Q Consensus 500 ~tLIV~P~S-Ll~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~ 578 (1322)
.+++|+=-. |-.|=.++|..+.. ...... .-.... .+...-.-..-.|||||-..|.......
T Consensus 305 ~v~fvvDR~dLd~Q~~~~f~~~~~--~~~~~~-~~~s~~-----~Lk~~l~~~~~~ii~TTIQKf~~~~~~~-------- 368 (962)
T COG0610 305 KVLFVVDRKDLDDQTSDEFQSFGK--VAFNDP-KAESTS-----ELKELLEDGKGKIIVTTIQKFNKAVKED-------- 368 (962)
T ss_pred eEEEEechHHHHHHHHHHHHHHHH--hhhhcc-cccCHH-----HHHHHHhcCCCcEEEEEecccchhhhcc--------
Confidence 456666554 55799999999864 111111 111000 0001111124579999999888754321
Q ss_pred hhhhhcccCCCcchhccccceeeeeccCccccCCchHHHHHH-HHHhccceEEEEeccCCCCChhh
Q 000739 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEM-ALRLYAKHRWCITGTPIQRKLDD 643 (1322)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~ka-l~~L~a~~RwlLTGTPiqN~l~D 643 (1322)
......-....||+||||+--.+. .++. -..++.-.-++.|||||...-.+
T Consensus 369 ------------~~~~~~~~~ivvI~DEaHRSQ~G~--~~~~~~~~~~~a~~~gFTGTPi~~~d~~ 420 (962)
T COG0610 369 ------------ELELLKRKNVVVIIDEAHRSQYGE--LAKLLKKALKKAIFIGFTGTPIFKEDKD 420 (962)
T ss_pred ------------cccccCCCcEEEEEechhhccccH--HHHHHHHHhccceEEEeeCCcccccccc
Confidence 012355677899999999865443 2222 23355677899999999875544
No 89
>PRK09694 helicase Cas3; Provisional
Probab=93.40 E-value=0.42 Score=63.28 Aligned_cols=76 Identities=12% Similarity=-0.005 Sum_probs=42.7
Q ss_pred cCEEEEehHHHhhhcccCCCCCccchhhhhhcccCCCcchhccccceeeeeccCccccCCchHHH-HHHHHHhc--cceE
Q 000739 553 ADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAA-TEMALRLY--AKHR 629 (1322)
Q Consensus 553 ~DVVITTYe~L~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~-~kal~~L~--a~~R 629 (1322)
.+|+|+|.+.+-.-+-.... ... -+..+.=..||+||+|.+-...+.. ...+..+. ....
T Consensus 411 api~V~TiDQlL~a~l~~kh------~~l-----------R~~~La~svvIiDEVHAyD~ym~~lL~~~L~~l~~~g~~v 473 (878)
T PRK09694 411 GQIGVCTIDQVLISVLPVKH------RFI-----------RGFGLGRSVLIVDEVHAYDAYMYGLLEAVLKAQAQAGGSV 473 (878)
T ss_pred CCEEEcCHHHHHHHHHccch------HHH-----------HHHhhccCeEEEechhhCCHHHHHHHHHHHHHHHhcCCcE
Confidence 68999999887654321000 000 0112333589999999985443333 23333332 3568
Q ss_pred EEEeccCCCCChhhhH
Q 000739 630 WCITGTPIQRKLDDLY 645 (1322)
Q Consensus 630 wlLTGTPiqN~l~DL~ 645 (1322)
++||+|+-..-..+|.
T Consensus 474 IllSATLP~~~r~~L~ 489 (878)
T PRK09694 474 ILLSATLPATLKQKLL 489 (878)
T ss_pred EEEeCCCCHHHHHHHH
Confidence 9999998654434443
No 90
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.04 E-value=0.42 Score=56.35 Aligned_cols=118 Identities=14% Similarity=0.127 Sum_probs=80.1
Q ss_pred cEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccch
Q 000739 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1322)
Q Consensus 500 ~tLIV~P~S-Ll~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~ 578 (1322)
..||++|.- |-.|-...|+.....-++++.+.-|..... .....-..+.+|+|.|-..|...+.....
T Consensus 131 ~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~-----~q~~~L~kkPhilVaTPGrL~dhl~~Tkg------ 199 (476)
T KOG0330|consen 131 FALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMM-----LQANQLSKKPHILVATPGRLWDHLENTKG------ 199 (476)
T ss_pred eEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHH-----HHHHHhhcCCCEEEeCcHHHHHHHHhccC------
Confidence 479999997 557888888888665578998888875432 12233446788999999999887642211
Q ss_pred hhhhhcccCCCcchhccccceeeeeccCccccCCch--HHHHHHHHHhccceE-EEEeccCCCCChhhh
Q 000739 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYAKHR-WCITGTPIQRKLDDL 644 (1322)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~a~~R-wlLTGTPiqN~l~DL 644 (1322)
+..-.-.++|+|||.++-|.. -..-+.++.++..++ ++.|+|- ..++..|
T Consensus 200 ---------------f~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~erqt~LfsATM-t~kv~kL 252 (476)
T KOG0330|consen 200 ---------------FSLEQLKFLVLDEADRLLDMDFEEELDYILKVIPRERQTFLFSATM-TKKVRKL 252 (476)
T ss_pred ---------------ccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCccceEEEEEeec-chhhHHH
Confidence 222234468999999998876 566777778876654 5667774 3334433
No 91
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=92.92 E-value=0.49 Score=62.06 Aligned_cols=113 Identities=16% Similarity=0.128 Sum_probs=66.4
Q ss_pred cEEEEeCCchh----HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCc
Q 000739 500 ATLIVCPAPIL----AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1322)
Q Consensus 500 ~tLIV~P~SLl----~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~ 575 (1322)
+++||+|+.-+ .+|...+.+++ ++++....|...... .... ...|||+.|-..|.-++-.....
T Consensus 137 ~v~IVTpTrELA~Qdae~m~~L~k~l---GLsV~~i~GG~~~~e------q~~~-y~~DIVygTPgRLgfDyLrd~~~-- 204 (970)
T PRK12899 137 PVHLVTVNDYLAQRDCEWVGSVLRWL---GLTTGVLVSGSPLEK------RKEI-YQCDVVYGTASEFGFDYLRDNSI-- 204 (970)
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhc---CCeEEEEeCCCCHHH------HHHH-cCCCEEEECCChhHHHHhhCCCC--
Confidence 47899998644 46888888887 588876665432210 1111 25899999988884443211100
Q ss_pred cchhhhhhcccCCCcchhccccceeeeeccCccccCCchHHHHHHHHHhccceEEEEeccCCCCChhhhHhhhh
Q 000739 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLR 649 (1322)
Q Consensus 576 ~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~ 649 (1322)
......+....+.++|||||-.+-- -.|+--+++||.+-.. .++|..++
T Consensus 205 ------------~~~~~~~vqr~~~~~IIDEADsmLi-----------DEArTPLIISg~~~~~--~~~Y~~~~ 253 (970)
T PRK12899 205 ------------ATRKEEQVGRGFYFAIIDEVDSILI-----------DEARTPLIISGPGEKH--NPVYFELK 253 (970)
T ss_pred ------------CcCHHHhhcccccEEEEechhhhhh-----------hccCCceeeeCCCccc--cHHHHHHh
Confidence 0000123445788999999987532 2345568888876433 44544433
No 92
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=92.87 E-value=0.61 Score=62.28 Aligned_cols=42 Identities=21% Similarity=0.248 Sum_probs=28.4
Q ss_pred ccCcCEEEEehHHHhhhcccCCCCCccchhhhhhcccCCCcchhccccceeeeeccCccccCCc
Q 000739 550 LVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN 613 (1322)
Q Consensus 550 l~~~DVVITTYe~L~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~ 613 (1322)
...+|||||+|..|-.+..... ..| .....+|+||||++...
T Consensus 414 a~~AdivItNHa~L~~~~~~~~--------------------~il--p~~~~lIiDEAH~L~d~ 455 (850)
T TIGR01407 414 AEQAQILITNHAYLITRLVDNP--------------------ELF--PSFRDLIIDEAHHLPDI 455 (850)
T ss_pred HhcCCEEEecHHHHHHHhhccc--------------------ccC--CCCCEEEEECcchHHHH
Confidence 4567899999999887652100 012 22368999999998643
No 93
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=92.47 E-value=1.1 Score=57.53 Aligned_cols=116 Identities=17% Similarity=0.060 Sum_probs=65.1
Q ss_pred CcEEEEeCCchhH----HHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCC
Q 000739 499 GATLIVCPAPILA----QWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 574 (1322)
Q Consensus 499 ~~tLIV~P~SLl~----qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~ 574 (1322)
..++||+|+--+. +|...+-++. ++++.+..|..... ........||++.|-..|.-|+-.+.-..
T Consensus 145 ~~v~VvTptreLA~qdae~~~~l~~~l---Glsv~~i~gg~~~~-------~r~~~y~~dIvygT~~e~~FDyLrd~~~~ 214 (656)
T PRK12898 145 LPVHVITVNDYLAERDAELMRPLYEAL---GLTVGCVVEDQSPD-------ERRAAYGADITYCTNKELVFDYLRDRLAL 214 (656)
T ss_pred CeEEEEcCcHHHHHHHHHHHHHHHhhc---CCEEEEEeCCCCHH-------HHHHHcCCCEEEECCCchhhhhccccccc
Confidence 4689999998663 6777777776 58887766653211 22233567999999777766543322111
Q ss_pred cc--chhhh---hhcccCCCcchhccccceeeeeccCccccCCchHHHHHHHHHhccceEEEEeccC
Q 000739 575 EG--DRRFM---RFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTP 636 (1322)
Q Consensus 575 ~~--~~~~~---r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTP 636 (1322)
.+ +.... +....+. ....+....++++|+||+..+-=. .+..-+++||.|
T Consensus 215 ~~~~~~~~~~~~~l~~~~~-~~~~~v~r~~~~aIvDEvDSiLiD-----------eartpliis~~~ 269 (656)
T PRK12898 215 GQRASDARLALESLHGRSS-RSTQLLLRGLHFAIVDEADSVLID-----------EARTPLIISAPA 269 (656)
T ss_pred cccccchhhhhhhhccccC-chhhhcccccceeEeecccceeec-----------cCCCceEEECCC
Confidence 00 00000 0000000 112344567899999999876322 244458888854
No 94
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=92.02 E-value=0.77 Score=60.23 Aligned_cols=131 Identities=15% Similarity=0.009 Sum_probs=66.2
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccc
Q 000739 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1322)
Q Consensus 499 ~~tLIV~P~-SLl~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1322)
...+.|.|. +++.+=.+.+..++.........+||......... +.. ..-+.++++++.....-..... ..
T Consensus 247 ~r~i~vlP~~t~ie~~~~r~~~~~~~~~~~~~~~h~~~~~~~~~~----~~~--~~~~~~~~~ds~~~~~~~~~~~--~~ 318 (733)
T COG1203 247 SRVIYVLPFRTIIEDMYRRAKEIFGLFSVIGKSLHSSSKEPLLLE----PDQ--DILLTLTTNDSYKKLLLALIVV--TP 318 (733)
T ss_pred ceEEEEccHHHHHHHHHHHHHhhhcccccccccccccccchhhhc----ccc--ccceeEEecccccceecccccc--CH
Confidence 456777776 46677888888776522222221355433221100 000 1125566666555433211110 00
Q ss_pred hhhhhhcccCCCcchhccccceeeeeccCccccCCc-hH-HHHHHHHHhc--cceEEEEeccCCC
Q 000739 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN-AA-AATEMALRLY--AKHRWCITGTPIQ 638 (1322)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~-~S-k~~kal~~L~--a~~RwlLTGTPiq 638 (1322)
-........+...+. +..+.-..||+||+|.+-.. .+ ....++..+. ....+++|||+-+
T Consensus 319 ~~~~~~~~~~~~~~~-~~~l~~S~vIlDE~h~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~ 382 (733)
T COG1203 319 IQILIFSVKGFKFEF-LALLLTSLVILDEVHLYADETMLAALLALLEALAEAGVPVLLMSATLPP 382 (733)
T ss_pred hHhhhhhccccchHH-HHHHHhhchhhccHHhhcccchHHHHHHHHHHHHhCCCCEEEEecCCCH
Confidence 001111112222223 66677889999999998766 33 3333344443 6778999999753
No 95
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=91.79 E-value=0.86 Score=57.37 Aligned_cols=110 Identities=20% Similarity=0.199 Sum_probs=73.7
Q ss_pred EEEEeCCc-hhHHHHHHHHhcCCCC-CCeEEEEcCCCcccccccccchhhhcc-CcCEEEEehHHHhhhcccCCCCCccc
Q 000739 501 TLIVCPAP-ILAQWDAEITRHTRPG-SLKTCIYEGARNSSLSDTSIMDISELV-GADIVLTTYDVLKEDLSHDSDRHEGD 577 (1322)
Q Consensus 501 tLIV~P~S-Ll~qW~~Ei~k~~~~g-~l~V~vy~G~~~~~~~~~~~~~~~~l~-~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1322)
.||++|+- |..|=.+++.++.... .+++..+.|...... ....+. ..||||.|-..+...+...
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~------q~~~l~~~~~ivVaTPGRllD~i~~~------- 168 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRK------QIEALKRGVDIVVATPGRLLDLIKRG------- 168 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHH------HHHHHhcCCCEEEECccHHHHHHHcC-------
Confidence 89999996 6679999998887643 577766666533211 122233 3999999999988654321
Q ss_pred hhhhhhcccCCCcchhccccceeeeeccCccccCCch--HHHHHHHHHhcc-ceEEEEeccCCC
Q 000739 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYA-KHRWCITGTPIQ 638 (1322)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~a-~~RwlLTGTPiq 638 (1322)
.|.--.-..+|+|||-++-+.. ..+...+..++. ...++.|+|--.
T Consensus 169 ---------------~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~ 217 (513)
T COG0513 169 ---------------KLDLSGVETLVLDEADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPD 217 (513)
T ss_pred ---------------CcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCH
Confidence 2334455689999999987764 445555555654 566788888543
No 96
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=91.62 E-value=0.61 Score=61.61 Aligned_cols=38 Identities=11% Similarity=0.102 Sum_probs=25.4
Q ss_pred hhccCCCCceEEEEcccCCcccccchhHhhhhccccccCCCCC
Q 000739 891 LSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSREENSDFT 933 (1322)
Q Consensus 891 ~hRIGQ~k~V~VyRlit~~TiEE~i~~~~k~~~~~~~~~~~~~ 933 (1322)
+-|-|-.++...|||.++... +.-+....+|+..++.+
T Consensus 318 ~GRAGR~~~G~cyrL~t~~~~-----~~l~~~~~PEI~r~~L~ 355 (819)
T TIGR01970 318 AGRAGRLEPGVCYRLWSEEQH-----QRLPAQDEPEILQADLS 355 (819)
T ss_pred hhhcCCCCCCEEEEeCCHHHH-----HhhhcCCCcceeccCcH
Confidence 666677899999999997543 22344556776655443
No 97
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=91.54 E-value=0.63 Score=58.83 Aligned_cols=150 Identities=15% Similarity=0.218 Sum_probs=84.8
Q ss_pred cCcCEEEEehHHHhhhcccCCCCCccchhhhhhcccCCCcchhccccce------eeeeccCccccCC-------chHHH
Q 000739 551 VGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFW------WRICLDEAQMVES-------NAAAA 617 (1322)
Q Consensus 551 ~~~DVVITTYe~L~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w------~rVILDEAH~IKN-------~~Sk~ 617 (1322)
-+-.|++.||..|-.+... .+.+...|+. .-+.| ..||+||.|+.|| ..|++
T Consensus 367 ~krGViFaTYtaLIGEs~~-----~~~kyrtR~r----------QllqW~Ge~feGvIvfDECHkAKNL~p~~~~k~TKt 431 (1300)
T KOG1513|consen 367 TKRGVIFATYTALIGESQG-----KGGKYRTRFR----------QLLQWCGEDFEGVIVFDECHKAKNLVPTAGAKSTKT 431 (1300)
T ss_pred ccceeEEEeeHhhhhhccc-----cCchHHHHHH----------HHHHHhhhccceeEEehhhhhhcccccccCCCcCcc
Confidence 3467999999999877532 1111111111 11223 3789999999999 33777
Q ss_pred HHHHHHhc----cceEEEEeccCCCCChhhhHhhhhccCCCCCC------ChhHHHHHHcCCCCCCccchHHH--HHHHh
Q 000739 618 TEMALRLY----AKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS------ISRWWIEVIRDPYENGDVGAMEF--THKFF 685 (1322)
Q Consensus 618 ~kal~~L~----a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f~------~~~~F~~~~~~p~~~g~~~~~~~--L~~lL 685 (1322)
.+++..|+ --+.+--|+|-.. |=-++.-..+.+.|| ++..|...+. +....+++- +--.+
T Consensus 432 G~tVLdLQk~LP~ARVVYASATGAs----EPrNMaYM~RLGlWGegtaf~eF~eFi~AvE----kRGvGAMEIVAMDMK~ 503 (1300)
T KOG1513|consen 432 GKTVLDLQKKLPNARVVYASATGAS----EPRNMAYMVRLGLWGEGTAFPEFEEFIHAVE----KRGVGAMEIVAMDMKL 503 (1300)
T ss_pred cHhHHHHHHhCCCceEEEeeccCCC----CcchhhhhhhhccccCCCcCccHHHHHHHHH----hcCCceeeeeehhhhh
Confidence 77877653 3445556666432 223333344444444 4444444332 222222221 11122
Q ss_pred hhhheecccccccccCCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Q 000739 686 KEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETC 730 (1322)
Q Consensus 686 ~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~ 730 (1322)
+...|- .+|.+-.-...+-.|+||++=++.|+...+-.
T Consensus 504 rGmYiA-------RQLSFkgVsFrieEv~ls~eF~k~Yn~a~~LW 541 (1300)
T KOG1513|consen 504 RGMYIA-------RQLSFKGVSFRIEEVPLSKEFRKVYNRAAELW 541 (1300)
T ss_pred hhhhhh-------hhccccCceEEEEecccCHHHHHHHHHHHHHH
Confidence 232222 35667777889999999999999999765543
No 98
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=91.45 E-value=1.4 Score=53.79 Aligned_cols=122 Identities=20% Similarity=0.221 Sum_probs=76.6
Q ss_pred CCCCcEEEEeCCch----hHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCC
Q 000739 496 VATGATLIVCPAPI----LAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDS 571 (1322)
Q Consensus 496 ~~~~~tLIV~P~SL----l~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~ 571 (1322)
..+.++||+||+-= +++-...+..|+ ++.|...-|.-..+. ....--...||||.|-+.|-.++....
T Consensus 250 ~~~TRVLVL~PTRELaiQv~sV~~qlaqFt---~I~~~L~vGGL~lk~-----QE~~LRs~PDIVIATPGRlIDHlrNs~ 321 (691)
T KOG0338|consen 250 VAATRVLVLVPTRELAIQVHSVTKQLAQFT---DITVGLAVGGLDLKA-----QEAVLRSRPDIVIATPGRLIDHLRNSP 321 (691)
T ss_pred CcceeEEEEeccHHHHHHHHHHHHHHHhhc---cceeeeeecCccHHH-----HHHHHhhCCCEEEecchhHHHHhccCC
Confidence 34578999999863 356677888888 688888777533221 122233568999999999987764322
Q ss_pred CCCccchhhhhhcccCCCcchhccccceeeeeccCccccCCch-HHHHHHHHHhccc--eEEEEeccCCCCChhhhHhh
Q 000739 572 DRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAATEMALRLYAK--HRWCITGTPIQRKLDDLYGL 647 (1322)
Q Consensus 572 ~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~-Sk~~kal~~L~a~--~RwlLTGTPiqN~l~DL~sL 647 (1322)
. +.--.-..+|+|||.++-... .-...-+-++.+. ..++.|+|- ...+.||-++
T Consensus 322 s---------------------f~ldsiEVLvlDEADRMLeegFademnEii~lcpk~RQTmLFSATM-teeVkdL~sl 378 (691)
T KOG0338|consen 322 S---------------------FNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATM-TEEVKDLASL 378 (691)
T ss_pred C---------------------ccccceeEEEechHHHHHHHHHHHHHHHHHHhccccccceeehhhh-HHHHHHHHHh
Confidence 1 222234579999999875332 2222223334333 458889984 4457777665
No 99
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=91.03 E-value=0.079 Score=44.89 Aligned_cols=30 Identities=40% Similarity=1.026 Sum_probs=24.0
Q ss_pred hcccccccccccccccccccccccccccccCcCC
Q 000739 417 ICGAVSESRKYKGLWVQCDICDAWQHADCVGYSP 450 (1322)
Q Consensus 417 ~c~~~~~~~~~~g~~v~c~~c~~w~h~~cv~~~~ 450 (1322)
+|+.. ...+.+|+|+.|..|.|..|++...
T Consensus 4 vC~~~----~~~~~~i~C~~C~~~~H~~C~~~~~ 33 (51)
T PF00628_consen 4 VCGQS----DDDGDMIQCDSCNRWYHQECVGPPE 33 (51)
T ss_dssp TTTSS----CTTSSEEEBSTTSCEEETTTSTSSH
T ss_pred CCCCc----CCCCCeEEcCCCChhhCcccCCCCh
Confidence 56662 2357899999999999999998654
No 100
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=90.89 E-value=0.48 Score=61.81 Aligned_cols=87 Identities=17% Similarity=0.279 Sum_probs=60.0
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCC-CeEEE-EcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCc
Q 000739 499 GATLIVCPAP-ILAQWDAEITRHTRPGS-LKTCI-YEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1322)
Q Consensus 499 ~~tLIV~P~S-Ll~qW~~Ei~k~~~~g~-l~V~v-y~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~ 575 (1322)
+.++||+|++ |+.|=.+-|.++....+ +++.+ |||.-..+. .......-..++|||+|||-..|.+.++
T Consensus 126 kr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~e-kee~le~i~~gdfdIlitTs~FL~k~~e------- 197 (1187)
T COG1110 126 KRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKE-KEEALERIESGDFDILITTSQFLSKRFE------- 197 (1187)
T ss_pred CeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHH-HHHHHHHHhcCCccEEEEeHHHHHhhHH-------
Confidence 5789999986 56899999999885332 55544 998733211 0111223344679999999999988653
Q ss_pred cchhhhhhcccCCCcchhccccceeeeeccCcccc
Q 000739 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMV 610 (1322)
Q Consensus 576 ~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~I 610 (1322)
.|.+.+|+.|++|-+..+
T Consensus 198 -----------------~L~~~kFdfifVDDVDA~ 215 (1187)
T COG1110 198 -----------------ELSKLKFDFIFVDDVDAI 215 (1187)
T ss_pred -----------------HhcccCCCEEEEccHHHH
Confidence 466778888888887753
No 101
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=90.28 E-value=1.1 Score=59.42 Aligned_cols=105 Identities=10% Similarity=0.020 Sum_probs=56.0
Q ss_pred CcEEEEeCCchh-HHHHHHHHhcCCC-CCCeEEE-EcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCc
Q 000739 499 GATLIVCPAPIL-AQWDAEITRHTRP-GSLKTCI-YEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1322)
Q Consensus 499 ~~tLIV~P~SLl-~qW~~Ei~k~~~~-g~l~V~v-y~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~ 575 (1322)
+.+||++|.-++ .|-.+.+.+.... -...|-. +.|.... .....|++.|.+.+.+.+...
T Consensus 49 ~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~~------------~~~t~I~v~T~G~Llr~l~~d----- 111 (812)
T PRK11664 49 GKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESKV------------GPNTRLEVVTEGILTRMIQRD----- 111 (812)
T ss_pred CeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCcccc------------CCCCcEEEEChhHHHHHHhhC-----
Confidence 368999998765 4556656543321 0122321 1121111 122368999999887654311
Q ss_pred cchhhhhhcccCCCcchhccccceeeeeccCccc-cCCchHH---HHHHHHHhcc-ceEEEEeccCCC
Q 000739 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQM-VESNAAA---ATEMALRLYA-KHRWCITGTPIQ 638 (1322)
Q Consensus 576 ~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~-IKN~~Sk---~~kal~~L~a-~~RwlLTGTPiq 638 (1322)
..--.+..|||||+|. .-+..-. ..+....++. ...+++|+|.-.
T Consensus 112 ------------------~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~~ 161 (812)
T PRK11664 112 ------------------PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDN 161 (812)
T ss_pred ------------------CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCCH
Confidence 1123578999999996 2222211 1122223433 356899999743
No 102
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=90.05 E-value=0.82 Score=60.03 Aligned_cols=101 Identities=21% Similarity=0.143 Sum_probs=61.5
Q ss_pred cEEEEeCCchh----HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCc
Q 000739 500 ATLIVCPAPIL----AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1322)
Q Consensus 500 ~tLIV~P~SLl----~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~ 575 (1322)
.++||+|+--| .+|...+.+++ ++++.+..|..... ........||++.|-..|.-|+-...-.
T Consensus 125 ~V~VvTpn~yLA~qd~e~m~~l~~~l---GLtv~~i~gg~~~~-------~r~~~y~~dIvygT~grlgfDyLrd~~~-- 192 (896)
T PRK13104 125 GVHIVTVNDYLAKRDSQWMKPIYEFL---GLTVGVIYPDMSHK-------EKQEAYKADIVYGTNNEYGFDYLRDNMA-- 192 (896)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhccc---CceEEEEeCCCCHH-------HHHHHhCCCEEEECChhhhHHHHhcCCc--
Confidence 58999999755 36888888887 58888777653221 1122235899999988875443211100
Q ss_pred cchhhhhhcccCCCcchhccccceeeeeccCccccCCchHHHHHHHHHhccceEEEEeccC
Q 000739 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTP 636 (1322)
Q Consensus 576 ~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTP 636 (1322)
+ .........+.++|+|||+.+--. .|+.-+++||.+
T Consensus 193 -----------~--~~~~~v~r~l~~~IvDEaDsiLID-----------eArtPLIISg~~ 229 (896)
T PRK13104 193 -----------F--SLTDKVQRELNFAIVDEVDSILID-----------EARTPLIISGAA 229 (896)
T ss_pred -----------c--chHhhhccccceEEeccHhhhhhh-----------ccCCceeeeCCC
Confidence 0 001123356789999999986322 234457778754
No 103
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=89.89 E-value=0.46 Score=59.78 Aligned_cols=131 Identities=15% Similarity=0.173 Sum_probs=85.8
Q ss_pred CCcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCcc
Q 000739 498 TGATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1322)
Q Consensus 498 ~~~tLIV~P~-SLl~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~ 576 (1322)
.|.||||.|. ||+..=.+.+... ++++...++.-... .............++++..+-+.+....-
T Consensus 57 ~G~TLVVSPLiSLM~DQV~~l~~~----Gi~A~~lnS~l~~~-e~~~v~~~l~~g~~klLyisPErl~~~~f-------- 123 (590)
T COG0514 57 EGLTLVVSPLISLMKDQVDQLEAA----GIRAAYLNSTLSRE-ERQQVLNQLKSGQLKLLYISPERLMSPRF-------- 123 (590)
T ss_pred CCCEEEECchHHHHHHHHHHHHHc----CceeehhhcccCHH-HHHHHHHHHhcCceeEEEECchhhcChHH--------
Confidence 5899999997 6666556666654 46666666542211 01111222334568999999999887521
Q ss_pred chhhhhhcccCCCcchhccccceeeeeccCccccCCch-------HHHHHHHHHhccceEEEEeccCCCCChhhhHhhhh
Q 000739 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-------AAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLR 649 (1322)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~-------Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~ 649 (1322)
...|....-.++++||||.|-... .........++-.-+++||+|--+.-..|+-..|.
T Consensus 124 --------------~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~ 189 (590)
T COG0514 124 --------------LELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLG 189 (590)
T ss_pred --------------HHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhc
Confidence 124567788899999999986553 33333344445557999999988888888888877
Q ss_pred ccCCCC
Q 000739 650 FLKSSP 655 (1322)
Q Consensus 650 FL~p~~ 655 (1322)
.=.+..
T Consensus 190 l~~~~~ 195 (590)
T COG0514 190 LQDANI 195 (590)
T ss_pred CCCcce
Confidence 666543
No 104
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=89.87 E-value=0.76 Score=59.44 Aligned_cols=93 Identities=14% Similarity=0.154 Sum_probs=56.4
Q ss_pred hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccchhhhhhcccCC
Q 000739 509 ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYP 588 (1322)
Q Consensus 509 Ll~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~~~~r~~kry~ 588 (1322)
|-.|=.++|+.-+. +.. +..|.-. -...+..+|+|-+.|++-+....+
T Consensus 352 LSNQKfRDFk~tF~--Dvg--LlTGDvq------------inPeAsCLIMTTEILRsMLYrgad---------------- 399 (1248)
T KOG0947|consen 352 LSNQKFRDFKETFG--DVG--LLTGDVQ------------INPEASCLIMTTEILRSMLYRGAD---------------- 399 (1248)
T ss_pred hccchHHHHHHhcc--ccc--eeeccee------------eCCCcceEeehHHHHHHHHhcccc----------------
Confidence 33456677777664 333 5666432 235677999999999998754222
Q ss_pred CcchhccccceeeeeccCccccCCch-HHHHHHHH-Hhcc-ceEEEEeccCCCCC
Q 000739 589 VIPTLLTRIFWWRICLDEAQMVESNA-AAATEMAL-RLYA-KHRWCITGTPIQRK 640 (1322)
Q Consensus 589 ~~~s~L~~i~w~rVILDEAH~IKN~~-Sk~~kal~-~L~a-~~RwlLTGTPiqN~ 640 (1322)
.+..+. .||+||.|+|-+.. .-.+.-+- .|+. ..-++||+| ++|.
T Consensus 400 ----liRDvE--~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~IlLSAT-VPN~ 447 (1248)
T KOG0947|consen 400 ----LIRDVE--FVIFDEVHYINDVERGVVWEEVIIMLPRHVNFILLSAT-VPNT 447 (1248)
T ss_pred ----hhhccc--eEEEeeeeecccccccccceeeeeeccccceEEEEecc-CCCh
Confidence 244444 59999999997654 22222222 2333 356889999 4443
No 105
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=88.49 E-value=5.3 Score=46.89 Aligned_cols=41 Identities=12% Similarity=0.088 Sum_probs=26.8
Q ss_pred ceeeeeccCccccCCch-HHHHHHHHHh--ccceEEEEeccCCC
Q 000739 598 FWWRICLDEAQMVESNA-AAATEMALRL--YAKHRWCITGTPIQ 638 (1322)
Q Consensus 598 ~w~rVILDEAH~IKN~~-Sk~~kal~~L--~a~~RwlLTGTPiq 638 (1322)
.||.+|+||..-.-=.. -....++++- .....+.||+||-.
T Consensus 202 aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~~IylTATp~k 245 (441)
T COG4098 202 AFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGATIYLTATPTK 245 (441)
T ss_pred hccEEEEeccccccccCCHHHHHHHHHhhcccCceEEEecCChH
Confidence 58999999998753221 2334444443 24568999999963
No 106
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=87.56 E-value=1.7 Score=53.26 Aligned_cols=86 Identities=21% Similarity=0.227 Sum_probs=59.1
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccc
Q 000739 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1322)
Q Consensus 499 ~~tLIV~P~S-Ll~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1322)
...||++|+. |+.|=.+|.+|+.-...++..+.+|....+.. ...-...+||+++|-..|..-+...
T Consensus 153 P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q-----~~~~~~gcdIlvaTpGrL~d~~e~g------- 220 (482)
T KOG0335|consen 153 PRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQ-----LRFIKRGCDILVATPGRLKDLIERG------- 220 (482)
T ss_pred CceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhh-----hhhhccCccEEEecCchhhhhhhcc-------
Confidence 4689999986 88999999999987666777666665433211 2233467999999999887654310
Q ss_pred hhhhhhcccCCCcchhccccceeeeeccCccccC
Q 000739 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVE 611 (1322)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IK 611 (1322)
+ -.|..+. ++|||||.++-
T Consensus 221 --------~-----i~l~~~k--~~vLDEADrMl 239 (482)
T KOG0335|consen 221 --------K-----ISLDNCK--FLVLDEADRML 239 (482)
T ss_pred --------e-----eehhhCc--EEEecchHHhh
Confidence 0 0233333 89999998754
No 107
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=86.71 E-value=1.5 Score=57.52 Aligned_cols=102 Identities=17% Similarity=0.099 Sum_probs=63.7
Q ss_pred CcEEEEeCCchhH----HHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCC
Q 000739 499 GATLIVCPAPILA----QWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 574 (1322)
Q Consensus 499 ~~tLIV~P~SLl~----qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~ 574 (1322)
+.+-||+|+-.|. +|...+-+++ +++|-+..+..... .....-.+||+..|...+.-|+-.+.-..
T Consensus 124 ~~VhvvT~ndyLA~RD~e~m~~l~~~l---Gl~v~~i~~~~~~~-------err~~Y~~dI~YGT~~e~gFDYLrD~~~~ 193 (913)
T PRK13103 124 KGVHVVTVNDYLARRDANWMRPLYEFL---GLSVGIVTPFQPPE-------EKRAAYAADITYGTNNEFGFDYLRDNMAF 193 (913)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHhccc---CCEEEEECCCCCHH-------HHHHHhcCCEEEEcccccccchhhcccee
Confidence 4688999998773 6888887777 68998887753321 22233458999999888754432111000
Q ss_pred ccchhhhhhcccCCCcchhccccceeeeeccCccccCCchHHHHHHHHHhccceEEEEeccC
Q 000739 575 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTP 636 (1322)
Q Consensus 575 ~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTP 636 (1322)
.........+.++|+||+|.|-=. .|+.-+++||.+
T Consensus 194 ---------------~~~~~vqr~l~~aIVDEvDsiLID-----------EArtPLIISg~~ 229 (913)
T PRK13103 194 ---------------SLDDKFQRELNFAVIDEVDSILID-----------EARTPLIISGQA 229 (913)
T ss_pred ---------------chhhhcccccceeEechhhheecc-----------ccCCceeecCCC
Confidence 012234567889999999987422 233457788753
No 108
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=86.05 E-value=1.9 Score=55.52 Aligned_cols=122 Identities=13% Similarity=0.097 Sum_probs=65.1
Q ss_pred CcEEEEeCCchh-H---HHHHHHHhcC-----CCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhh---
Q 000739 499 GATLIVCPAPIL-A---QWDAEITRHT-----RPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKED--- 566 (1322)
Q Consensus 499 ~~tLIV~P~SLl-~---qW~~Ei~k~~-----~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d--- 566 (1322)
..++||||+.-+ . +=-+++..|+ ..-.+..++|...... .....-....|+|.+.+.+.++
T Consensus 105 ~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~~~~-------~~~~~~~~~~vLl~~~~Afnk~~in 177 (985)
T COG3587 105 FKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDEDIEK-------FKFKSNNKPCVLLIFVSAFNKEEIN 177 (985)
T ss_pred eeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechHHHH-------HhhccCCCceEEEEehhhhcccccc
Confidence 368999997543 2 2233444444 2235666777521110 1122223456888888888776
Q ss_pred cccCC---CCCccchhhhhhcccCCCcchhccccceeeeeccCccccCCchHHHHHHHHHhccceEEEEecc
Q 000739 567 LSHDS---DRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGT 635 (1322)
Q Consensus 567 ~~~~~---~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGT 635 (1322)
..... ....+. ++.-+..+ ..|... =-.||+||-|++... .+++.++..|+.-.-+=-.+|
T Consensus 178 an~iN~~s~~~~~~-----~~~~~spv-d~la~~-rPIvIvDEPh~f~~~-~k~~~~i~~l~pl~ilRfgAT 241 (985)
T COG3587 178 ANMINSESMENTNL-----FNGATSPV-DALASM-RPIVIVDEPHRFLGD-DKTYGAIKQLNPLLILRFGAT 241 (985)
T ss_pred ccccchhhhcccCc-----cccccCHH-HHHHhc-CCEEEecChhhcccc-hHHHHHHHhhCceEEEEeccc
Confidence 11111 000000 00000000 112221 126999999999865 788999999988776666676
No 109
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=86.04 E-value=1.6 Score=54.71 Aligned_cols=36 Identities=22% Similarity=0.372 Sum_probs=27.9
Q ss_pred CCcEEEEeCCch-hHHHHHHHHhcCCCCCCeEEEEcCCCcc
Q 000739 498 TGATLIVCPAPI-LAQWDAEITRHTRPGSLKTCIYEGARNS 537 (1322)
Q Consensus 498 ~~~tLIV~P~SL-l~qW~~Ei~k~~~~g~l~V~vy~G~~~~ 537 (1322)
.+|+||++|+.+ +.|-..-|.+- .++|+.....+++
T Consensus 454 ~~~VLvcApSNiAVDqLaeKIh~t----gLKVvRl~aksRE 490 (935)
T KOG1802|consen 454 AGPVLVCAPSNIAVDQLAEKIHKT----GLKVVRLCAKSRE 490 (935)
T ss_pred CCceEEEcccchhHHHHHHHHHhc----CceEeeeehhhhh
Confidence 379999999986 68988888874 5898877665443
No 110
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=85.70 E-value=2.5 Score=55.66 Aligned_cols=112 Identities=16% Similarity=0.150 Sum_probs=68.0
Q ss_pred CcEEEEeCCchh----HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCC
Q 000739 499 GATLIVCPAPIL----AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 574 (1322)
Q Consensus 499 ~~tLIV~P~SLl----~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~ 574 (1322)
+.+.||+|+--| ..|...+.+|. +++|....|.... ......-.+||+..|-..|.-|+-...-
T Consensus 124 ~~VhIvT~ndyLA~RD~e~m~~l~~~l---Glsv~~i~~~~~~-------~~r~~~Y~~dI~YgT~~e~gfDyLrdnm-- 191 (908)
T PRK13107 124 KGVHVITVNDYLARRDAENNRPLFEFL---GLTVGINVAGLGQ-------QEKKAAYNADITYGTNNEFGFDYLRDNM-- 191 (908)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHHHhc---CCeEEEecCCCCH-------HHHHhcCCCCeEEeCCCcccchhhhccC--
Confidence 458999998755 47999999998 6888776554221 0122223578999887776544322110
Q ss_pred ccchhhhhhcccCCCcchhccccceeeeeccCccccCCchHHHHHHHHHhccceEEEEeccCCCCChhhhHhhh
Q 000739 575 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLL 648 (1322)
Q Consensus 575 ~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL 648 (1322)
...+..+....+.++|+||+..+-... |+.-+++||.+ ... .++|..+
T Consensus 192 -------------~~~~~~~vqr~~~~aIvDEvDsiLiDE-----------ArtPLIISg~~-~~~-~~~y~~~ 239 (908)
T PRK13107 192 -------------AFSPQERVQRPLHYALIDEVDSILIDE-----------ARTPLIISGAA-EDS-SELYIKI 239 (908)
T ss_pred -------------ccchhhhhccccceeeecchhhhcccc-----------CCCceeecCCC-ccc-hHHHHHH
Confidence 000122445678899999998764332 44557888854 333 4555543
No 111
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=85.24 E-value=4.5 Score=55.60 Aligned_cols=83 Identities=22% Similarity=0.172 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHhhhhcccccCCCCCcccccCccccchhhhhchhhHHHhHHHHHH
Q 000739 1229 KQLHILEAMRKEYA-NARSLATAQAQFLRAHDEIRMATTRLHLKEDDNDTSVDALSPDELASASVTNSSEKFISMTLLSQ 1307 (1322)
Q Consensus 1229 ~hl~lle~mrkEf~-~~r~l~~a~~~~l~A~DEL~Mat~Rlrlr~~~e~~~~~~i~~~Ev~~~~~~~~~ek~~a~~~l~r 1307 (1322)
.|-.+++..|.++. .+..+.....+.|.++.++.. +| +.......... -.++..+...|...-|++..-..+
T Consensus 1129 ~f~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~---~l--~~~~~~~~~~~--~~di~~ql~~L~~~~f~~~~~~~~ 1201 (1294)
T PRK11131 1129 GFAALHEKVRAELNDTVVDIAKQVEQILTAVFNINK---RL--KGRVDMTMALA--LSDIKAQMGGLVYRGFVTGNGWKR 1201 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hh--ccCCChhhhhh--HHHHHHHHHHhccCCccccCCHHH
Confidence 34445555555554 555666667777777777742 22 21111111111 136777777788888888777777
Q ss_pred hhccccccccc
Q 000739 1308 VKGKLRYLKVS 1318 (1322)
Q Consensus 1308 ~~gqL~YL~~l 1318 (1322)
+.-=-|||+.+
T Consensus 1202 l~~~pryl~a~ 1212 (1294)
T PRK11131 1202 LGDTLRYLQAI 1212 (1294)
T ss_pred HHHhHHHHHHH
Confidence 77777888765
No 112
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=85.14 E-value=1.9 Score=53.10 Aligned_cols=119 Identities=13% Similarity=0.206 Sum_probs=75.3
Q ss_pred cEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccch
Q 000739 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1322)
Q Consensus 500 ~tLIV~P~S-Ll~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~ 578 (1322)
..|||.|+- |..|-..-+.+......+..-..-|..... .....+...+|+|.|-+.|-.+++...
T Consensus 143 GalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k------~E~eRi~~mNILVCTPGRLLQHmde~~------- 209 (758)
T KOG0343|consen 143 GALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVK------FELERISQMNILVCTPGRLLQHMDENP------- 209 (758)
T ss_pred eeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhH------HHHHhhhcCCeEEechHHHHHHhhhcC-------
Confidence 579999986 445665555543322245554555544332 234556778999999999998876422
Q ss_pred hhhhhcccCCCcchhccccceeeeeccCccccCCch-HHH-HHHHHHhc-cceEEEEeccCCCCChhhhHh
Q 000739 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAA-TEMALRLY-AKHRWCITGTPIQRKLDDLYG 646 (1322)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~-Sk~-~kal~~L~-a~~RwlLTGTPiqN~l~DL~s 646 (1322)
.|..-.-.++|||||.++-... ..+ -..+..|+ .+..++.|+||.. ++.||--
T Consensus 210 --------------~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~-svkdLaR 265 (758)
T KOG0343|consen 210 --------------NFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTK-SVKDLAR 265 (758)
T ss_pred --------------CCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccch-hHHHHHH
Confidence 2444456789999999976543 222 23334454 4567899999975 4666544
No 113
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=83.44 E-value=5.4 Score=53.40 Aligned_cols=94 Identities=14% Similarity=0.064 Sum_probs=53.4
Q ss_pred chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccchhhhhhcccC
Q 000739 508 PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRY 587 (1322)
Q Consensus 508 SLl~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~~~~r~~kry 587 (1322)
.|..|=.++|..-+..-.--+-++.|.-. -..+..++++|-+.|++-+....
T Consensus 173 ALsNQKyrdl~~~fgdv~~~vGL~TGDv~------------IN~~A~clvMTTEILRnMlyrg~---------------- 224 (1041)
T COG4581 173 ALSNQKYRDLLAKFGDVADMVGLMTGDVS------------INPDAPCLVMTTEILRNMLYRGS---------------- 224 (1041)
T ss_pred hhhhhHHHHHHHHhhhhhhhccceeccee------------eCCCCceEEeeHHHHHHHhccCc----------------
Confidence 45556666665443200112345556422 23456677777799998764321
Q ss_pred CCcchhccccceeeeeccCccccCCch-HHHHHHHH-Hhc-cceEEEEecc
Q 000739 588 PVIPTLLTRIFWWRICLDEAQMVESNA-AAATEMAL-RLY-AKHRWCITGT 635 (1322)
Q Consensus 588 ~~~~s~L~~i~w~rVILDEAH~IKN~~-Sk~~kal~-~L~-a~~RwlLTGT 635 (1322)
..+.. -..||+||.|+|.... .-.+.-+- .++ ...-++||+|
T Consensus 225 ----~~~~~--i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v~~v~LSAT 269 (1041)
T COG4581 225 ----ESLRD--IEWVVFDEVHYIGDRERGVVWEEVIILLPDHVRFVFLSAT 269 (1041)
T ss_pred ----ccccc--cceEEEEeeeeccccccchhHHHHHHhcCCCCcEEEEeCC
Confidence 12333 3469999999998765 33333333 333 3477899999
No 114
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=82.63 E-value=3.8 Score=53.15 Aligned_cols=24 Identities=33% Similarity=0.624 Sum_probs=18.8
Q ss_pred cceeecCCCccHHHHHHHHHHHhc
Q 000739 359 GGILADEMGLGKTVELLACIFAHR 382 (1322)
Q Consensus 359 GGILADEMGLGKTvq~LALIl~~~ 382 (1322)
.|+|-+-.|.|||+-.|+-.++..
T Consensus 42 ~~llESPTGTGKSLsLLCS~LAW~ 65 (945)
T KOG1132|consen 42 NGLLESPTGTGKSLSLLCSTLAWQ 65 (945)
T ss_pred hhhccCCCCCCccHHHHHHHHHHH
Confidence 477778899999999887666643
No 115
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=82.32 E-value=3.3 Score=54.43 Aligned_cols=102 Identities=17% Similarity=0.128 Sum_probs=61.7
Q ss_pred cEEEEeCCchhH----HHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCc
Q 000739 500 ATLIVCPAPILA----QWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1322)
Q Consensus 500 ~tLIV~P~SLl~----qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~ 575 (1322)
.+-||+|+..+. +|...+-+++ ++++.+..|..... .....-..||++.|...|.-|+-...-.
T Consensus 124 ~V~IvTpn~yLA~rd~e~~~~l~~~L---Glsv~~i~~~~~~~-------er~~~y~~dI~ygT~~elgfDyLrd~~~-- 191 (830)
T PRK12904 124 GVHVVTVNDYLAKRDAEWMGPLYEFL---GLSVGVILSGMSPE-------ERREAYAADITYGTNNEFGFDYLRDNMV-- 191 (830)
T ss_pred CEEEEecCHHHHHHHHHHHHHHHhhc---CCeEEEEcCCCCHH-------HHHHhcCCCeEEECCcchhhhhhhcccc--
Confidence 356999998663 5888887777 68888877753321 1112234899999988886554221100
Q ss_pred cchhhhhhcccCCCcchhccccceeeeeccCccccCCchHHHHHHHHHhccceEEEEeccCC
Q 000739 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPI 637 (1322)
Q Consensus 576 ~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPi 637 (1322)
+ ....+....+.++|+|||..+-=. .|+.-+++||.+-
T Consensus 192 -----------~--~~~~~~~r~~~~aIvDEaDsiLID-----------eArtpLiiSg~~~ 229 (830)
T PRK12904 192 -----------F--SLEERVQRGLNYAIVDEVDSILID-----------EARTPLIISGPAE 229 (830)
T ss_pred -----------c--chhhhcccccceEEEechhhheec-----------cCCCceeeECCCC
Confidence 0 012244556888999999875322 2344567777643
No 116
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=81.55 E-value=6.6 Score=52.78 Aligned_cols=114 Identities=11% Similarity=0.221 Sum_probs=68.4
Q ss_pred cEEEEeC-CchhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHH---HhhhcccCCCCCc
Q 000739 500 ATLIVCP-APILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDV---LKEDLSHDSDRHE 575 (1322)
Q Consensus 500 ~tLIV~P-~SLl~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~---L~~d~~~~~~~~~ 575 (1322)
...-|+| .+|+.-|...|.++..+=+++|.-..|.... ....+..-.|+++|-+. +.+. +
T Consensus 366 KIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l--------~~~qieeTqVIV~TPEK~DiITRk--------~ 429 (1674)
T KOG0951|consen 366 KIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQL--------GKEQIEETQVIVTTPEKWDIITRK--------S 429 (1674)
T ss_pred eEEEEeeHHHHHHHHHHHHHhhccccCcEEEEecccccc--------hhhhhhcceeEEeccchhhhhhcc--------c
Confidence 4566677 5899999999999987555666666676443 23445566678877543 3322 1
Q ss_pred cchhhhhhcccCCCcchhccccceeeeeccCcccc---CCch--HHHHHHHHHhc----cceEEEEeccCCCCChhhhHh
Q 000739 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMV---ESNA--AAATEMALRLY----AKHRWCITGTPIQRKLDDLYG 646 (1322)
Q Consensus 576 ~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~I---KN~~--Sk~~kal~~L~----a~~RwlLTGTPiqN~l~DL~s 646 (1322)
+++... --...+|+||.|++ +.+. |-.++..++.. ..+-+.||+|- + |.+|.-+
T Consensus 430 gdraY~---------------qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r~ses~~e~~RlVGLSATL-P-Ny~DV~~ 492 (1674)
T KOG0951|consen 430 GDRAYE---------------QLVRLLIIDEIHLLHDDRGPVLESIVARTFRRSESTEEGSRLVGLSATL-P-NYEDVAS 492 (1674)
T ss_pred CchhHH---------------HHHHHHhhhhhhhcccccchHHHHHHHHHHHHhhhcccCceeeeecccC-C-chhhhHH
Confidence 221110 12456899999999 3332 44445555442 34557899994 3 3455544
No 117
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=81.32 E-value=1 Score=44.57 Aligned_cols=82 Identities=11% Similarity=-0.051 Sum_probs=51.3
Q ss_pred cchhhhhhhhHhHHHHHHHhHhHHH---HHHHHHH--HHHHHHhhhccCCCCcce----------------eeEecCCCC
Q 000739 822 LRKLVMALNGLAGIALIEKNLSQAV---SLYKEAM--AVVEEHSEDFRLDPLLNI----------------HLHHNLTEI 880 (1322)
Q Consensus 822 ~rkvLifsq~la~L~ile~~l~~a~---~~y~~~l--~~~~e~~~~f~~D~~~~l----------------~~~~nl~dw 880 (1322)
..++|+|++.......+.+.+.... ..+.+.+ ..+...++.|+.+....+ ++.+--.+|
T Consensus 28 ~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~~~~~~ 107 (131)
T cd00079 28 GGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVINYDLPW 107 (131)
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCEEEEeCCCC
Confidence 3678888888888777777765421 1111111 234455555555442111 333333369
Q ss_pred Chhhhhhhhh-hhccCCCCceEEE
Q 000739 881 LPMVANCATE-LSQNEQHFPGCSE 903 (1322)
Q Consensus 881 Np~~d~QA~d-~hRIGQ~k~V~Vy 903 (1322)
++....|+.. |+|.||+..|.+|
T Consensus 108 ~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 108 SPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CHHHheecccccccCCCCceEEeC
Confidence 9999999999 9999998877664
No 118
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=80.91 E-value=5 Score=47.80 Aligned_cols=107 Identities=19% Similarity=0.326 Sum_probs=74.7
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhc-cCcCEEEEehHHHhhhcccCCCCCcc
Q 000739 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISEL-VGADIVLTTYDVLKEDLSHDSDRHEG 576 (1322)
Q Consensus 499 ~~tLIV~P~S-Ll~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l-~~~DVVITTYe~L~~d~~~~~~~~~~ 576 (1322)
-.+||..|.. |..|-+-|..++.-.+...+++|.|.++.. ...++ ...+++|.|-..|..-...
T Consensus 295 p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR~e-------qie~lkrgveiiiatPgrlndL~~~------- 360 (629)
T KOG0336|consen 295 PGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNE-------QIEDLKRGVEIIIATPGRLNDLQMD------- 360 (629)
T ss_pred CceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCchh-------HHHHHhcCceEEeeCCchHhhhhhc-------
Confidence 4689999986 556888888888777778889999876542 33343 4588999998887653210
Q ss_pred chhhhhhcccCCCcchhccccceeeeeccCccccCCch--HHHHHHHHHhccceEEEEec
Q 000739 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYAKHRWCITG 634 (1322)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~a~~RwlLTG 634 (1322)
....--.--++|||||.++-... -++.+.+..++.++-.+||-
T Consensus 361 ---------------n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTS 405 (629)
T KOG0336|consen 361 ---------------NVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTS 405 (629)
T ss_pred ---------------CeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeec
Confidence 01222234589999999876543 67788888888777666654
No 119
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PRK14873 primosome assembly protein PriA; Provisional
Probab=79.62 E-value=6.1 Score=51.26 Aligned_cols=107 Identities=7% Similarity=-0.080 Sum_probs=65.1
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccc
Q 000739 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1322)
Q Consensus 499 ~~tLIV~P~-SLl~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1322)
+.+||++|. ++..|+..-|+..++ .-.+.+||+.-........ ......++.+|||=|+..+=.
T Consensus 189 k~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~-w~~~~~G~~~IViGtRSAvFa------------ 253 (665)
T PRK14873 189 RGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRR-WLAVLRGQARVVVGTRSAVFA------------ 253 (665)
T ss_pred CeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHH-HHHHhCCCCcEEEEcceeEEe------------
Confidence 569999997 688999999999985 4678889985332110000 112234567799887775422
Q ss_pred hhhhhhcccCCCcchhccccceeeeeccCccc--cCCchHHHH--HHHH----HhccceEEEEeccCC
Q 000739 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQM--VESNAAAAT--EMAL----RLYAKHRWCITGTPI 637 (1322)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~--IKN~~Sk~~--kal~----~L~a~~RwlLTGTPi 637 (1322)
|+. +..+||+||=|- .|...+..+ +-+. .+..-.-++-|+||-
T Consensus 254 ---------------P~~--~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPS 304 (665)
T PRK14873 254 ---------------PVE--DLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHART 304 (665)
T ss_pred ---------------ccC--CCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCC
Confidence 222 457899999885 454432221 1111 223445566799984
No 121
>PRK04296 thymidine kinase; Provisional
Probab=79.62 E-value=9.8 Score=41.46 Aligned_cols=36 Identities=19% Similarity=0.076 Sum_probs=23.0
Q ss_pred ceeeeeccCccccCCchHHHHHHHHHhc-cceEEEEecc
Q 000739 598 FWWRICLDEAQMVESNAAAATEMALRLY-AKHRWCITGT 635 (1322)
Q Consensus 598 ~w~rVILDEAH~IKN~~Sk~~kal~~L~-a~~RwlLTGT 635 (1322)
.++.||+||||.+.. .+....+..+. ....+++||-
T Consensus 78 ~~dvviIDEaq~l~~--~~v~~l~~~l~~~g~~vi~tgl 114 (190)
T PRK04296 78 KIDCVLIDEAQFLDK--EQVVQLAEVLDDLGIPVICYGL 114 (190)
T ss_pred CCCEEEEEccccCCH--HHHHHHHHHHHHcCCeEEEEec
Confidence 578999999999843 23444445533 4456677754
No 122
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=76.57 E-value=1.8 Score=46.37 Aligned_cols=45 Identities=24% Similarity=0.279 Sum_probs=28.3
Q ss_pred hhccCcCEEEEehHHHhhhcccCCCCCccchhhhhhcccCCCcchhc-cccceeeeeccCccccCCc
Q 000739 548 SELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLL-TRIFWWRICLDEAQMVESN 613 (1322)
Q Consensus 548 ~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L-~~i~w~rVILDEAH~IKN~ 613 (1322)
.....+||||++|..|-..... . ... ....-..||+||||+|.+.
T Consensus 115 ~~~~~adivi~~y~yl~~~~~~---------~------------~~~~~~~~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 115 ELAKNADIVICNYNYLFDPSIR---------K------------SLFGIDLKDNIVIFDEAHNLEDA 160 (174)
T ss_dssp HCGGG-SEEEEETHHHHSHHHH---------H------------HHCT--CCCEEEEETTGGGCGGG
T ss_pred HhcccCCEEEeCHHHHhhHHHH---------h------------hhccccccCcEEEEecccchHHH
Confidence 3456789999999998764210 0 011 2234468999999999754
No 123
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=75.58 E-value=9 Score=49.61 Aligned_cols=119 Identities=14% Similarity=0.092 Sum_probs=69.4
Q ss_pred CcEEEEeCCchh----HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCC
Q 000739 499 GATLIVCPAPIL----AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 574 (1322)
Q Consensus 499 ~~tLIV~P~SLl----~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~ 574 (1322)
+.+-||+|+..+ .+|...+-+++ +++|....+..... .....-.+||+-+|-..+.-|+-.+.-.
T Consensus 120 ~~VhvvT~NdyLA~RDae~m~~ly~~L---GLsvg~i~~~~~~~-------err~aY~~DItYgTn~e~gFDyLRDnm~- 188 (764)
T PRK12326 120 RRVHVITVNDYLARRDAEWMGPLYEAL---GLTVGWITEESTPE-------ERRAAYACDVTYASVNEIGFDVLRDQLV- 188 (764)
T ss_pred CCeEEEcCCHHHHHHHHHHHHHHHHhc---CCEEEEECCCCCHH-------HHHHHHcCCCEEcCCcccccccchhhhc-
Confidence 568899999877 37888888887 69998877653321 2233446788777655555443211100
Q ss_pred ccchhhhhhcccCCCcchhccccceeeeeccCccccCCchHHHHHHHHHhccceEEEEeccCCC-CChhhhHhhhhccCC
Q 000739 575 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQ-RKLDDLYGLLRFLKS 653 (1322)
Q Consensus 575 ~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiq-N~l~DL~sLL~FL~p 653 (1322)
..+.......++++|+||+..+-=. .++.-+++||.+-. +.....+.+..-|..
T Consensus 189 --------------~~~~~~v~R~~~faIVDEvDSiLID-----------eArtPLiISg~~~~~~~y~~~~~~v~~L~~ 243 (764)
T PRK12326 189 --------------TDVADLVSPNPDVAIIDEADSVLVD-----------EALVPLVLAGSTPGEAPRGEIAELVRRLRE 243 (764)
T ss_pred --------------cChHhhcCCccceeeecchhhheec-----------cccCceeeeCCCcchhHHHHHHHHHHhcCc
Confidence 0012234556889999999865322 24556788875532 233333344444433
No 124
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=72.58 E-value=10 Score=47.29 Aligned_cols=124 Identities=18% Similarity=0.136 Sum_probs=74.8
Q ss_pred CCCcEEEEeCCch-hHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCc
Q 000739 497 ATGATLIVCPAPI-LAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1322)
Q Consensus 497 ~~~~tLIV~P~SL-l~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~ 575 (1322)
..+.+|.++|.-- -.|=..+|.+-..+=.+++.+--|..+-+.... ........++||++-||+-+---+..
T Consensus 260 ~g~KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~-pv~~~t~~dADIIVGTYEGiD~lLRt------ 332 (830)
T COG1202 260 GGKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREE-PVVVDTSPDADIIVGTYEGIDYLLRT------ 332 (830)
T ss_pred CCCeEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCC-ccccCCCCCCcEEEeechhHHHHHHc------
Confidence 3578999999864 457777787666544677877777755432211 12344557899999999976433211
Q ss_pred cchhhhhhcccCCCcchhccccceeeeeccCccccCCch--HHHHHHHHHhc----cceEEEEeccCCCCChhhhHh
Q 000739 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY----AKHRWCITGTPIQRKLDDLYG 646 (1322)
Q Consensus 576 ~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~----a~~RwlLTGTPiqN~l~DL~s 646 (1322)
.+ .| -.-..||+||.|++.... ...--.+.+|+ .-..+.||+|- .|+.||-.
T Consensus 333 --------g~-------~l--gdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATV--gNp~elA~ 390 (830)
T COG1202 333 --------GK-------DL--GDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATV--GNPEELAK 390 (830)
T ss_pred --------CC-------cc--cccceEEeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeec--CChHHHHH
Confidence 00 01 134589999999998632 33333333332 34567788882 34455444
No 125
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=72.17 E-value=13 Score=51.42 Aligned_cols=84 Identities=23% Similarity=0.250 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHhhhhcccccCCCCCcccccCccccchhhhhchhhHHHhHHHHHH
Q 000739 1229 KQLHILEAMRKEYA-NARSLATAQAQFLRAHDEIRMATTRLHLKEDDNDTSVDALSPDELASASVTNSSEKFISMTLLSQ 1307 (1322)
Q Consensus 1229 ~hl~lle~mrkEf~-~~r~l~~a~~~~l~A~DEL~Mat~Rlrlr~~~e~~~~~~i~~~Ev~~~~~~~~~ek~~a~~~l~r 1307 (1322)
.|-.+++..|.++. .+..+.....+.|.++.++. .+| +.......... -.++..+...|...-|++..-..+
T Consensus 1119 ~f~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~---~~l--~~~~~~~~~~~--~~di~~ql~~L~~~~f~~~~~~~~ 1191 (1283)
T TIGR01967 1119 DFAALLAQVRAELAPEVERIAKQLEEILVLFGNIR---KRL--KGKIDPTQAKA--LSDIKAQLDKLVYQGFVRTTGPQR 1191 (1283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHh--ccCCChhhhhH--HHHHHHHHHHhccCCccccCCHHH
Confidence 44455566666654 56667777777888888774 233 21111111111 247778888888888888888777
Q ss_pred hhcccccccccc
Q 000739 1308 VKGKLRYLKVST 1319 (1322)
Q Consensus 1308 ~~gqL~YL~~l~ 1319 (1322)
+.-=-|||+.+.
T Consensus 1192 l~~~pRYl~A~~ 1203 (1283)
T TIGR01967 1192 LSHLPRYLKAME 1203 (1283)
T ss_pred HhHhHHHHHHHH
Confidence 777778887653
No 126
>KOG1844 consensus PHD Zn-finger proteins [General function prediction only]
Probab=71.63 E-value=1.8 Score=54.31 Aligned_cols=36 Identities=42% Similarity=0.912 Sum_probs=31.0
Q ss_pred hhhhhhcccccccccccccccccccccccccccccCcCC
Q 000739 412 ERVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSP 450 (1322)
Q Consensus 412 ~~v~c~c~~~~~~~~~~g~~v~c~~c~~w~h~~cv~~~~ 450 (1322)
+...|+|+...+. .|..++|+.|..|||..|+|+-.
T Consensus 85 ~~~~c~c~~~~~~---~g~~i~c~~c~~Wqh~~C~g~~~ 120 (508)
T KOG1844|consen 85 EISRCDCGLEDDM---EGLMIQCDWCGRWQHKICCGSFK 120 (508)
T ss_pred cccccccccccCC---CceeeCCcccCcccCceeeeecC
Confidence 4578999998875 67889999999999999998654
No 127
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=70.93 E-value=15 Score=44.01 Aligned_cols=17 Identities=29% Similarity=0.268 Sum_probs=14.8
Q ss_pred ccceeeeeccCccccCC
Q 000739 596 RIFWWRICLDEAQMVES 612 (1322)
Q Consensus 596 ~i~w~rVILDEAH~IKN 612 (1322)
.-.++.||+||||++..
T Consensus 81 ~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 81 KNKYDVIIVDEAQRLRT 97 (352)
T ss_pred CCcCCEEEEehhHhhhh
Confidence 45689999999999987
No 128
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=69.91 E-value=14 Score=46.53 Aligned_cols=40 Identities=20% Similarity=0.235 Sum_probs=25.9
Q ss_pred ccccceeeeeccCccccCCchHHHHHHHHHhccceEEEEeccCCC
Q 000739 594 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQ 638 (1322)
Q Consensus 594 L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiq 638 (1322)
+.+..|+.||+|||-..--+.+- -.+ + ...+++|.|-|.|
T Consensus 354 ~~~~~fD~vIIDEaaQamE~~cW--ipv--l-k~kk~ILaGDp~Q 393 (649)
T KOG1803|consen 354 LRKRTFDLVIIDEAAQAMEPQCW--IPV--L-KGKKFILAGDPKQ 393 (649)
T ss_pred hcccCCCEEEEehhhhhccchhh--hHH--h-cCCceEEeCCccc
Confidence 44567999999998654333322 112 2 3348999999987
No 129
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=68.54 E-value=33 Score=44.58 Aligned_cols=41 Identities=20% Similarity=0.076 Sum_probs=28.0
Q ss_pred hccccceeeeeccCccccCCchHHHHHHHHHhccceEEEEeccCCC
Q 000739 593 LLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQ 638 (1322)
Q Consensus 593 ~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiq 638 (1322)
.|....|+.||+|||-.+-.+.+-. -.+.+ .+++|-|=|.|
T Consensus 356 ~l~~~~Fd~vIIDEAsQ~~ep~~li----pl~~~-~~~vLvGD~~Q 396 (637)
T TIGR00376 356 GLKGWEFDVAVIDEASQAMEPSCLI----PLLKA-RKLILAGDHKQ 396 (637)
T ss_pred hhccCCCCEEEEECccccchHHHHH----HHhhC-CeEEEecChhh
Confidence 4677899999999996665553211 11233 48899898877
No 130
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=68.34 E-value=7.6 Score=48.08 Aligned_cols=32 Identities=16% Similarity=0.215 Sum_probs=26.4
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEE
Q 000739 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCI 530 (1322)
Q Consensus 499 ~~tLIV~P~-SLl~qW~~Ei~k~~~~g~l~V~v 530 (1322)
+||||++|. +|..|-..||+.|+|.....++|
T Consensus 58 rPtLV~AhNKTLAaQLy~Efk~fFP~NaVEYFV 90 (663)
T COG0556 58 RPTLVLAHNKTLAAQLYSEFKEFFPENAVEYFV 90 (663)
T ss_pred CCeEEEecchhHHHHHHHHHHHhCcCcceEEEe
Confidence 699999997 56689999999999966555554
No 131
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=67.84 E-value=2.4 Score=49.00 Aligned_cols=49 Identities=37% Similarity=0.848 Sum_probs=38.0
Q ss_pred hhhhhhhccccccccccccccccccc--cc-ccccccccCcCCCCCcccchhhhhhhcccccccccccccCcccccchhh
Q 000739 411 RERVECICGAVSESRKYKGLWVQCDI--CD-AWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDE 487 (1322)
Q Consensus 411 ~~~v~c~c~~~~~~~~~~g~~v~c~~--c~-~w~h~~cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~ 487 (1322)
.+...|+|..++ -|..|.||. |. .|-|-.|||...+ +-+..+|+.|..
T Consensus 217 ~e~~yC~Cnqvs-----yg~Mi~CDn~~C~~eWFH~~CVGL~~~------------------------PkgkWyC~~C~~ 267 (274)
T KOG1973|consen 217 DEPTYCICNQVS-----YGKMIGCDNPGCPIEWFHFTCVGLKTK------------------------PKGKWYCPRCKA 267 (274)
T ss_pred CCCEEEEecccc-----cccccccCCCCCCcceEEEeccccccC------------------------CCCcccchhhhh
Confidence 345679998554 378899999 99 8999999997643 346689999975
Q ss_pred h
Q 000739 488 L 488 (1322)
Q Consensus 488 ~ 488 (1322)
.
T Consensus 268 ~ 268 (274)
T KOG1973|consen 268 E 268 (274)
T ss_pred h
Confidence 4
No 132
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=66.63 E-value=22 Score=43.53 Aligned_cols=110 Identities=20% Similarity=0.167 Sum_probs=65.6
Q ss_pred cEEEEeCCch-hHH---HHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCc
Q 000739 500 ATLIVCPAPI-LAQ---WDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1322)
Q Consensus 500 ~tLIV~P~SL-l~q---W~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~ 575 (1322)
..|||.|+-= ..| =...|-.|++ .++...+-|...... ....-.-....|+|-|-+.|..-+.+..
T Consensus 81 galIIsPTRELa~QI~~V~~~F~~~l~--~l~~~l~vGG~~v~~----Di~~fkee~~nIlVgTPGRL~di~~~~~---- 150 (567)
T KOG0345|consen 81 GALIISPTRELARQIREVAQPFLEHLP--NLNCELLVGGRSVEE----DIKTFKEEGPNILVGTPGRLLDILQREA---- 150 (567)
T ss_pred eEEEecCcHHHHHHHHHHHHHHHHhhh--ccceEEEecCccHHH----HHHHHHHhCCcEEEeCchhHHHHHhchh----
Confidence 5799999863 333 4455666665 788888888744321 1111222346799999888876543211
Q ss_pred cchhhhhhcccCCCcchhccccceeeeeccCccccCCch--HHHHHHHHHhccceEEE-Eecc
Q 000739 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYAKHRWC-ITGT 635 (1322)
Q Consensus 576 ~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~a~~Rwl-LTGT 635 (1322)
..+.-..-..+|||||.++-... ...-..+..|+..+|-. .|+|
T Consensus 151 ----------------~~l~~rsLe~LVLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSAT 197 (567)
T KOG0345|consen 151 ----------------EKLSFRSLEILVLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSAT 197 (567)
T ss_pred ----------------hhccccccceEEecchHhHhcccHHHHHHHHHHhcccccccccccch
Confidence 11223356789999999986543 44455556666655543 3444
No 133
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=65.58 E-value=3.5 Score=48.06 Aligned_cols=44 Identities=18% Similarity=0.181 Sum_probs=29.4
Q ss_pred hhccCcCEEEEehHHHhhhcccCCCCCccchhhhhhcccCCCcchhccccceeeeeccCccccCC
Q 000739 548 SELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES 612 (1322)
Q Consensus 548 ~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN 612 (1322)
.....+||||++|..|-.+.... . .-....-..||+||||++..
T Consensus 207 ~~~~~Adivi~ny~yll~~~~r~---------~------------~~~~l~~~~lIiDEAHnL~d 250 (289)
T smart00488 207 KAIEFANVVVLPYQYLLDPKIRQ---------A------------LSIELKDSIVIFDEAHNLDN 250 (289)
T ss_pred HHhhcCCEEEECHHHHhcHHHHH---------H------------hcccccccEEEEeCccChHH
Confidence 34577999999999997653110 0 00012457899999999864
No 134
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=65.58 E-value=3.5 Score=48.06 Aligned_cols=44 Identities=18% Similarity=0.181 Sum_probs=29.4
Q ss_pred hhccCcCEEEEehHHHhhhcccCCCCCccchhhhhhcccCCCcchhccccceeeeeccCccccCC
Q 000739 548 SELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES 612 (1322)
Q Consensus 548 ~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN 612 (1322)
.....+||||++|..|-.+.... . .-....-..||+||||++..
T Consensus 207 ~~~~~Adivi~ny~yll~~~~r~---------~------------~~~~l~~~~lIiDEAHnL~d 250 (289)
T smart00489 207 KAIEFANVVVLPYQYLLDPKIRQ---------A------------LSIELKDSIVIFDEAHNLDN 250 (289)
T ss_pred HHhhcCCEEEECHHHHhcHHHHH---------H------------hcccccccEEEEeCccChHH
Confidence 34577999999999997653110 0 00012457899999999864
No 135
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=64.30 E-value=13 Score=48.83 Aligned_cols=87 Identities=17% Similarity=0.097 Sum_probs=54.2
Q ss_pred CcEEEEeCCchh----HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCC
Q 000739 499 GATLIVCPAPIL----AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 574 (1322)
Q Consensus 499 ~~tLIV~P~SLl----~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~ 574 (1322)
+.+-||+|+..+ ..|...+-+++ +++|....|..... .....-.+||+-+|-..|.-|+-.+.-.
T Consensus 122 ~~v~vvT~neyLA~Rd~e~~~~~~~~L---Gl~vg~i~~~~~~~-------~r~~~y~~dI~Y~t~~e~gfDyLRD~m~- 190 (796)
T PRK12906 122 KGVHVVTVNEYLSSRDATEMGELYRWL---GLTVGLNLNSMSPD-------EKRAAYNCDITYSTNSELGFDYLRDNMV- 190 (796)
T ss_pred CCeEEEeccHHHHHhhHHHHHHHHHhc---CCeEEEeCCCCCHH-------HHHHHhcCCCeecCCccccccchhhccc-
Confidence 467888999877 36888888887 68998877653221 2234456788877766665544221100
Q ss_pred ccchhhhhhcccCCCcchhccccceeeeeccCcccc
Q 000739 575 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMV 610 (1322)
Q Consensus 575 ~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~I 610 (1322)
..+..+....++++|+||+..+
T Consensus 191 --------------~~~~~~v~r~~~~aIvDEvDSi 212 (796)
T PRK12906 191 --------------VYKEQMVQRPLNYAIVDEVDSI 212 (796)
T ss_pred --------------cchhhhhccCcceeeeccchhe
Confidence 0012234456788999998865
No 136
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=62.92 E-value=6.2 Score=39.38 Aligned_cols=35 Identities=23% Similarity=0.272 Sum_probs=27.5
Q ss_pred eeeeccCccccCCchHHHHHHHHHh--ccceEEEEeccC
Q 000739 600 WRICLDEAQMVESNAAAATEMALRL--YAKHRWCITGTP 636 (1322)
Q Consensus 600 ~rVILDEAH~IKN~~Sk~~kal~~L--~a~~RwlLTGTP 636 (1322)
..||+||+|.+. +......++.+ .....+++.|||
T Consensus 89 ~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred eEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 789999999984 25556666666 567789999999
No 137
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=62.18 E-value=22 Score=44.18 Aligned_cols=93 Identities=18% Similarity=0.289 Sum_probs=57.0
Q ss_pred EEEEeCCc-hhHHHHHHHHhcCCCCCCeE----EEEcCCCcccccccccchhhhc-cCcCEEEEehHHHhhhcccCCCCC
Q 000739 501 TLIVCPAP-ILAQWDAEITRHTRPGSLKT----CIYEGARNSSLSDTSIMDISEL-VGADIVLTTYDVLKEDLSHDSDRH 574 (1322)
Q Consensus 501 tLIV~P~S-Ll~qW~~Ei~k~~~~g~l~V----~vy~G~~~~~~~~~~~~~~~~l-~~~DVVITTYe~L~~d~~~~~~~~ 574 (1322)
.|||+|+- |..|-.+-+.+...+ +.. ++.-|.++.. ....+ ...+|+|-|-+.|..++.+....
T Consensus 214 ALVivPTREL~~Q~y~~~qKLl~~--~hWIVPg~lmGGEkkKS-------EKARLRKGiNILIgTPGRLvDHLknT~~i- 283 (708)
T KOG0348|consen 214 ALVIVPTRELALQIYETVQKLLKP--FHWIVPGVLMGGEKKKS-------EKARLRKGINILIGTPGRLVDHLKNTKSI- 283 (708)
T ss_pred EEEEechHHHHHHHHHHHHHHhcC--ceEEeeceeeccccccc-------HHHHHhcCceEEEcCchHHHHHHhccchh-
Confidence 69999986 778888888887753 222 2233333321 12222 34689999999998877543221
Q ss_pred ccchhhhhhcccCCCcchhccccceeeeeccCccccCCc-----hHHHHHHHHH
Q 000739 575 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN-----AAAATEMALR 623 (1322)
Q Consensus 575 ~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~-----~Sk~~kal~~ 623 (1322)
.+.+ -..||+|||.+|-.- -+++.+++..
T Consensus 284 ------------------~~s~--LRwlVlDEaDrlleLGfekdit~Il~~v~~ 317 (708)
T KOG0348|consen 284 ------------------KFSR--LRWLVLDEADRLLELGFEKDITQILKAVHS 317 (708)
T ss_pred ------------------eeee--eeEEEecchhHHHhccchhhHHHHHHHHhh
Confidence 1233 345999999997432 3566666643
No 138
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=59.10 E-value=6.2 Score=51.69 Aligned_cols=48 Identities=27% Similarity=0.291 Sum_probs=33.5
Q ss_pred hhccCcCEEEEehHHHhhhcccCCCCCccchhhhhhcccCCCcchhccccceeeeeccCccccCCch
Q 000739 548 SELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA 614 (1322)
Q Consensus 548 ~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~ 614 (1322)
.....+|||||++..|-.++.. +. ...|.......+|+||||.+....
T Consensus 215 ~~a~~AdivVtNH~LLladl~~------~~-------------~~iLp~~~~~~lViDEAH~L~d~A 262 (697)
T PRK11747 215 REIDEADVVVANHDLVLADLEL------GG-------------GVVLPDPENLLYVLDEGHHLPDVA 262 (697)
T ss_pred HHHhhCCEEEECcHHHHhhhhc------cC-------------CcccCCCCCCEEEEECccchHHHH
Confidence 3456789999999999887631 00 013434467889999999997543
No 139
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=56.21 E-value=56 Score=37.79 Aligned_cols=87 Identities=18% Similarity=0.067 Sum_probs=49.9
Q ss_pred CcEEEEeCCchh----HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCC
Q 000739 499 GATLIVCPAPIL----AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 574 (1322)
Q Consensus 499 ~~tLIV~P~SLl----~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~ 574 (1322)
+++=||+.+..+ .+|...|-+++ ++.|-...+.... ......-..||+-+|-..+.-|+-.+.-.
T Consensus 119 ~~V~vvT~NdyLA~RD~~~~~~~y~~L---Glsv~~~~~~~~~-------~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~- 187 (266)
T PF07517_consen 119 KGVHVVTSNDYLAKRDAEEMRPFYEFL---GLSVGIITSDMSS-------EERREAYAADIVYGTNSEFGFDYLRDNLA- 187 (266)
T ss_dssp S-EEEEESSHHHHHHHHHHHHHHHHHT---T--EEEEETTTEH-------HHHHHHHHSSEEEEEHHHHHHHHHHHTT--
T ss_pred CCcEEEeccHHHhhccHHHHHHHHHHh---hhccccCccccCH-------HHHHHHHhCcccccccchhhHHHHHHHHh-
Confidence 467777777655 37999999988 6888666554321 01223446789888877777654221000
Q ss_pred ccchhhhhhcccCCCcchhccccceeeeeccCcccc
Q 000739 575 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMV 610 (1322)
Q Consensus 575 ~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~I 610 (1322)
..+.......++.+|+||+..+
T Consensus 188 --------------~~~~~~~~r~~~~~ivDEvDs~ 209 (266)
T PF07517_consen 188 --------------LSKNEQVQRGFDFAIVDEVDSI 209 (266)
T ss_dssp --------------SSGGG--SSSSSEEEECTHHHH
T ss_pred --------------hccchhccCCCCEEEEeccceE
Confidence 0011223457889999998754
No 140
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=55.72 E-value=34 Score=45.51 Aligned_cols=88 Identities=16% Similarity=0.151 Sum_probs=54.2
Q ss_pred CcEEEEeCCchh----HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCC
Q 000739 499 GATLIVCPAPIL----AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 574 (1322)
Q Consensus 499 ~~tLIV~P~SLl----~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~ 574 (1322)
+.+-||.+.--+ ..|...+.+|+ ++.|-+..+.... ......-.+||+-+|-..|.-|+-.+.-.
T Consensus 127 kgVhVVTvNdYLA~RDae~m~~vy~~L---GLtvg~i~~~~~~-------~err~aY~~DItYgTn~e~gFDYLRDnm~- 195 (939)
T PRK12902 127 KGVHVVTVNDYLARRDAEWMGQVHRFL---GLSVGLIQQDMSP-------EERKKNYACDITYATNSELGFDYLRDNMA- 195 (939)
T ss_pred CCeEEEeCCHHHHHhHHHHHHHHHHHh---CCeEEEECCCCCh-------HHHHHhcCCCeEEecCCcccccchhhhhc-
Confidence 467788887655 48999999999 6888776543221 12334457889888866665443211000
Q ss_pred ccchhhhhhcccCCCcchhccccceeeeeccCccccC
Q 000739 575 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVE 611 (1322)
Q Consensus 575 ~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IK 611 (1322)
..........++++|+||+..|-
T Consensus 196 --------------~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 196 --------------TDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred --------------ccccccccCccceEEEeccccee
Confidence 00112345678889999998763
No 141
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=55.03 E-value=50 Score=42.86 Aligned_cols=60 Identities=12% Similarity=0.059 Sum_probs=31.4
Q ss_pred ceeeeeccCccccCCch-HHHHHHHHHhccceEEEEeccCCCCChhhhHhhhhccCCCCCC
Q 000739 598 FWWRICLDEAQMVESNA-AAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS 657 (1322)
Q Consensus 598 ~w~rVILDEAH~IKN~~-Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f~ 657 (1322)
.|..+|+||+|++-... ....+.+..-...-+++++.|=...-+.-+.+-...+...++.
T Consensus 118 k~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs 178 (702)
T PRK14960 118 RFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLA 178 (702)
T ss_pred CcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCC
Confidence 57789999999985321 1122222222344578887765444333344433333334443
No 142
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=54.89 E-value=24 Score=43.81 Aligned_cols=86 Identities=21% Similarity=0.257 Sum_probs=57.3
Q ss_pred cEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccch
Q 000739 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1322)
Q Consensus 500 ~tLIV~P~S-Ll~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~ 578 (1322)
..+|++|+- |..|-..|-.+|..+-+++++..-|...-. .....-...++|||.|-..|-.-+..
T Consensus 324 yaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~E-----Eq~fqls~gceiviatPgrLid~Len--------- 389 (673)
T KOG0333|consen 324 YAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFE-----EQGFQLSMGCEIVIATPGRLIDSLEN--------- 389 (673)
T ss_pred eeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchh-----hhhhhhhccceeeecCchHHHHHHHH---------
Confidence 468889986 567899999999876677877666643211 01122234688999998887654421
Q ss_pred hhhhhcccCCCcchhccccceeeeeccCccccCC
Q 000739 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES 612 (1322)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN 612 (1322)
-.|..-.--+||+|||.++-.
T Consensus 390 -------------r~lvl~qctyvvldeadrmiD 410 (673)
T KOG0333|consen 390 -------------RYLVLNQCTYVVLDEADRMID 410 (673)
T ss_pred -------------HHHHhccCceEeccchhhhhc
Confidence 124444566899999997654
No 143
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=54.74 E-value=8.2 Score=49.72 Aligned_cols=44 Identities=23% Similarity=0.225 Sum_probs=30.3
Q ss_pred ccCcCEEEEehHHHhhhcccCCCCCccchhhhhhcccCCCcchhccccceeeeeccCccccCCchH
Q 000739 550 LVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAA 615 (1322)
Q Consensus 550 l~~~DVVITTYe~L~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~S 615 (1322)
...+|||||++..|..+.... . ..|. ..+.||+||||.+....+
T Consensus 180 a~~AdivItNHalL~~~~~~~----------------~----~iLP--~~~~lIiDEAH~L~d~A~ 223 (636)
T TIGR03117 180 ARRCRILFCTHAMLGLAFRDK----------------W----GLLP--QPDILIVDEAHLFEQNIS 223 (636)
T ss_pred cccCCEEEECHHHHHHHhhhh----------------c----CCCC--CCCEEEEeCCcchHHHHH
Confidence 577899999999998743110 0 1222 368999999999975443
No 144
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=53.89 E-value=28 Score=45.14 Aligned_cols=34 Identities=26% Similarity=0.231 Sum_probs=26.9
Q ss_pred cCEEEEehHHHhhhcccCCCCCccchhhhhhcccCCCcchhccccceeeeeccCccc
Q 000739 553 ADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQM 609 (1322)
Q Consensus 553 ~DVVITTYe~L~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~ 609 (1322)
-.|-++|-+.|.+++.+ .+.-..+..|||||||.
T Consensus 350 T~IkFMTDGVLLrEi~~-----------------------DflL~kYSvIIlDEAHE 383 (1172)
T KOG0926|consen 350 TSIKFMTDGVLLREIEN-----------------------DFLLTKYSVIILDEAHE 383 (1172)
T ss_pred ceeEEecchHHHHHHHH-----------------------hHhhhhceeEEechhhh
Confidence 45888999999998753 34555678999999996
No 145
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=53.74 E-value=11 Score=41.86 Aligned_cols=44 Identities=27% Similarity=0.199 Sum_probs=21.9
Q ss_pred cceeeeeccCccccCCchHHHHHHHHHhccceEEEEeccCCCCChh
Q 000739 597 IFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLD 642 (1322)
Q Consensus 597 i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l~ 642 (1322)
+....||+||||++.. ...-..+.++....+++++|=|.|.++.
T Consensus 118 ~~~~~iIvDEaQN~t~--~~~k~ilTR~g~~skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 118 FDNAFIIVDEAQNLTP--EELKMILTRIGEGSKIIITGDPSQIDLP 161 (205)
T ss_dssp B-SEEEEE-SGGG--H--HHHHHHHTTB-TT-EEEEEE--------
T ss_pred ccceEEEEecccCCCH--HHHHHHHcccCCCcEEEEecCceeecCC
Confidence 3457999999998753 2333445567778999999999987653
No 146
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=53.60 E-value=56 Score=40.52 Aligned_cols=115 Identities=18% Similarity=0.178 Sum_probs=66.2
Q ss_pred cCCCCCCCcEE-EEeCC-chhHHHHHHHHhcCCCCCCeEEE-EcCCCcccccccccchhhhc-cCcCEEEEehHHHhhhc
Q 000739 492 TDSPVATGATL-IVCPA-PILAQWDAEITRHTRPGSLKTCI-YEGARNSSLSDTSIMDISEL-VGADIVLTTYDVLKEDL 567 (1322)
Q Consensus 492 ~~~~~~~~~tL-IV~P~-SLl~qW~~Ei~k~~~~g~l~V~v-y~G~~~~~~~~~~~~~~~~l-~~~DVVITTYe~L~~d~ 567 (1322)
.+....-+|++ |+||+ .+..|-..|.++|...-+++++. |.|..... +...+ ..+.||+.|-+.|-..+
T Consensus 289 ~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~e-------Q~k~Lk~g~EivVaTPgRlid~V 361 (731)
T KOG0339|consen 289 PELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWE-------QSKELKEGAEIVVATPGRLIDMV 361 (731)
T ss_pred hhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHH-------HHHhhhcCCeEEEechHHHHHHH
Confidence 33344556765 55676 57789999999996544677655 54443321 11222 56789999999887654
Q ss_pred ccCCCCCccchhhhhhcccCCCcchhccccceeeeeccCccccCCch-HHHHHHH-HHhccce-EEEEecc
Q 000739 568 SHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAATEMA-LRLYAKH-RWCITGT 635 (1322)
Q Consensus 568 ~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~-Sk~~kal-~~L~a~~-RwlLTGT 635 (1322)
.. ....-.+-.++|+|||.++-... -.+.+.+ ..++.++ .++.++|
T Consensus 362 km----------------------Katn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaT 410 (731)
T KOG0339|consen 362 KM----------------------KATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSAT 410 (731)
T ss_pred Hh----------------------hcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeecc
Confidence 21 01122234578999999986543 2222333 2344443 4555555
No 147
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=51.33 E-value=57 Score=42.89 Aligned_cols=106 Identities=13% Similarity=0.047 Sum_probs=65.9
Q ss_pred CcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccc
Q 000739 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1322)
Q Consensus 499 ~~tLIV~P~-SLl~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1322)
+.+||++|. ++..|-.+.|+..+ +.++.++|..=..+... ........++..|||=|...+=.
T Consensus 246 kqvLvLVPEI~Ltpq~~~rf~~rF---g~~v~vlHS~Ls~~er~-~~W~~~~~G~~~vVIGtRSAlF~------------ 309 (730)
T COG1198 246 KQVLVLVPEIALTPQLLARFKARF---GAKVAVLHSGLSPGERY-RVWRRARRGEARVVIGTRSALFL------------ 309 (730)
T ss_pred CEEEEEeccccchHHHHHHHHHHh---CCChhhhcccCChHHHH-HHHHHHhcCCceEEEEechhhcC------------
Confidence 579999997 78899999998888 47888888753221100 01122334667799877766532
Q ss_pred hhhhhhcccCCCcchhccccceeeeeccCccc--cCCchHHHH--HHH----HHhccceEEEEeccCC
Q 000739 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQM--VESNAAAAT--EMA----LRLYAKHRWCITGTPI 637 (1322)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~--IKN~~Sk~~--kal----~~L~a~~RwlLTGTPi 637 (1322)
||. +-..||+||=|- .|..+...+ +-+ ......-.++-|+||-
T Consensus 310 ---------------Pf~--~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~~~pvvLgSATPS 360 (730)
T COG1198 310 ---------------PFK--NLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKENAPVVLGSATPS 360 (730)
T ss_pred ---------------chh--hccEEEEeccccccccCCcCCCcCHHHHHHHHHHHhCCCEEEecCCCC
Confidence 222 346899999996 454442222 111 1233445788899995
No 148
>PRK10536 hypothetical protein; Provisional
Probab=50.21 E-value=13 Score=42.57 Aligned_cols=41 Identities=29% Similarity=0.187 Sum_probs=33.3
Q ss_pred eeeeeccCccccCCchHHHHHHHHHhccceEEEEeccCCCCCh
Q 000739 599 WWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKL 641 (1322)
Q Consensus 599 w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l 641 (1322)
=..||+||||++.- .+....+.++....+++++|-|-|.++
T Consensus 177 ~~~vIvDEaqn~~~--~~~k~~ltR~g~~sk~v~~GD~~QiD~ 217 (262)
T PRK10536 177 NAVVILDEAQNVTA--AQMKMFLTRLGENVTVIVNGDITQCDL 217 (262)
T ss_pred CCEEEEechhcCCH--HHHHHHHhhcCCCCEEEEeCChhhccC
Confidence 36899999999864 455566678889999999999988764
No 149
>KOG4284 consensus DEAD box protein [Transcription]
Probab=49.81 E-value=60 Score=41.40 Aligned_cols=121 Identities=16% Similarity=0.182 Sum_probs=80.7
Q ss_pred CCCCcEEEEeCCchh-HHHHHHHHhcCCC-CCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCC
Q 000739 496 VATGATLIVCPAPIL-AQWDAEITRHTRP-GSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDR 573 (1322)
Q Consensus 496 ~~~~~tLIV~P~SLl-~qW~~Ei~k~~~~-g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~ 573 (1322)
...--.+||+|+-=+ -|-++-|.+.++. .++++.+|-|..... .+...+.+..|||-|-+.+..-+..
T Consensus 91 ~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~------~d~~rlk~~rIvIGtPGRi~qL~el---- 160 (980)
T KOG4284|consen 91 SSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHK------LDLIRLKQTRIVIGTPGRIAQLVEL---- 160 (980)
T ss_pred cCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhh------hhhhhhhhceEEecCchHHHHHHHh----
Confidence 334467999998744 5777777666541 368899999876543 2455667788999999988775431
Q ss_pred CccchhhhhhcccCCCcchhccccceeeeeccCccccCCchH---HHHHHHHHhcc-ceEEEEeccCCCCChhhhH
Q 000739 574 HEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAA---AATEMALRLYA-KHRWCITGTPIQRKLDDLY 645 (1322)
Q Consensus 574 ~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~S---k~~kal~~L~a-~~RwlLTGTPiqN~l~DL~ 645 (1322)
..+..-+-++.|||||..+-...| .....+..|+. +..+++|+|=-+| |+++.
T Consensus 161 ------------------~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~n-Ldn~L 217 (980)
T KOG4284|consen 161 ------------------GAMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRN-LDNLL 217 (980)
T ss_pred ------------------cCCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchh-HHHHH
Confidence 123344567899999999876554 34455556654 5678899996554 55443
No 150
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=49.79 E-value=6 Score=48.45 Aligned_cols=54 Identities=20% Similarity=0.362 Sum_probs=34.6
Q ss_pred hhhcccccccccccccccccccccccccccccCcCCCCCcccchhhhhhhcccccccccccccCcccccchhhh
Q 000739 415 ECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDEL 488 (1322)
Q Consensus 415 ~c~c~~~~~~~~~~g~~v~c~~c~~w~h~~cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~ 488 (1322)
.|+|+.......+ ..|||+.|..|.|..|..---+..... .....|.|..|..-
T Consensus 171 c~vC~~g~~~~~N--rmlqC~~C~~~fHq~Chqp~i~~~l~~------------------D~~~~w~C~~C~~~ 224 (464)
T KOG4323|consen 171 CSVCYCGGPGAGN--RMLQCDKCRQWYHQACHQPLIKDELAG------------------DPFYEWFCDVCNRG 224 (464)
T ss_pred eeeeecCCcCccc--eeeeecccccHHHHHhccCCCCHhhcc------------------CccceEeehhhccc
Confidence 4555555554444 679999999999999964222211111 24567899999753
No 151
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=49.11 E-value=9.7 Score=50.00 Aligned_cols=65 Identities=22% Similarity=0.196 Sum_probs=40.5
Q ss_pred HHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccchhhhhhcccCCCcchh
Q 000739 514 DAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTL 593 (1322)
Q Consensus 514 ~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~~~~r~~kry~~~~s~ 593 (1322)
.+|+.++.. ...++.|... ...+..+||||.+|..|-.... ++ ..
T Consensus 171 iEdL~~~g~--~~~~CPY~~s------------r~~~~~advIi~pYnyl~dp~~---------r~------------~~ 215 (705)
T TIGR00604 171 IEDLVEYGE--LLGLCPYFAT------------RKMLPFANIVLLPYQYLLDPKI---------RS------------AV 215 (705)
T ss_pred HHHHHHhcc--cCCCCccHHH------------HHhhhcCCEEEechHHhcCHHH---------HH------------Hh
Confidence 355666553 5566667654 3445779999999998854211 00 01
Q ss_pred ccccceeeeeccCccccCCc
Q 000739 594 LTRIFWWRICLDEAQMVESN 613 (1322)
Q Consensus 594 L~~i~w~rVILDEAH~IKN~ 613 (1322)
-..+.-..||+||||+|-+.
T Consensus 216 ~~~l~~~ivI~DEAHNL~d~ 235 (705)
T TIGR00604 216 SIELKDSIVIFDEAHNLDNV 235 (705)
T ss_pred hcccccCEEEEECccchHHH
Confidence 12234478999999999654
No 152
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=48.93 E-value=37 Score=38.86 Aligned_cols=20 Identities=25% Similarity=0.082 Sum_probs=15.5
Q ss_pred cceeecCCCccHHHHHHHHH
Q 000739 359 GGILADEMGLGKTVELLACI 378 (1322)
Q Consensus 359 GGILADEMGLGKTvq~LALI 378 (1322)
.-||.=..|.|||..+-++.
T Consensus 44 ~vll~GppGtGKTtlA~~ia 63 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVARILG 63 (261)
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 34677889999999876654
No 153
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=47.91 E-value=34 Score=44.17 Aligned_cols=68 Identities=16% Similarity=0.310 Sum_probs=42.5
Q ss_pred chhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccchhhhhhcccC
Q 000739 508 PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRY 587 (1322)
Q Consensus 508 SLl~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~~~~r~~kry 587 (1322)
+|-.|=.+|+..-+. .|-...|. ..-...+.-+++|-+.|++-+...+
T Consensus 183 ALSNQKYREl~~EF~----DVGLMTGD------------VTInP~ASCLVMTTEILRsMLYRGS---------------- 230 (1041)
T KOG0948|consen 183 ALSNQKYRELLEEFK----DVGLMTGD------------VTINPDASCLVMTTEILRSMLYRGS---------------- 230 (1041)
T ss_pred hhcchhHHHHHHHhc----ccceeecc------------eeeCCCCceeeeHHHHHHHHHhccc----------------
Confidence 344566677665443 23334443 2223456688999999998764311
Q ss_pred CCcchhccccceeeeeccCccccCCc
Q 000739 588 PVIPTLLTRIFWWRICLDEAQMVESN 613 (1322)
Q Consensus 588 ~~~~s~L~~i~w~rVILDEAH~IKN~ 613 (1322)
..+..+.| ||+||.|+++..
T Consensus 231 ----EvmrEVaW--VIFDEIHYMRDk 250 (1041)
T KOG0948|consen 231 ----EVMREVAW--VIFDEIHYMRDK 250 (1041)
T ss_pred ----hHhheeee--EEeeeehhcccc
Confidence 24566666 899999999864
No 154
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.49 E-value=1.4e+02 Score=37.60 Aligned_cols=40 Identities=15% Similarity=0.259 Sum_probs=23.8
Q ss_pred ceeeeeccCccccCCchHHHHHHHHHh---ccceEEEEeccCCCC
Q 000739 598 FWWRICLDEAQMVESNAAAATEMALRL---YAKHRWCITGTPIQR 639 (1322)
Q Consensus 598 ~w~rVILDEAH~IKN~~Sk~~kal~~L---~a~~RwlLTGTPiqN 639 (1322)
.+..+|+||+|++.... ....++.| +..-+++++.|-+..
T Consensus 116 ~~KVvIIDEah~Ls~~A--~NaLLK~LEePp~~v~fIlatte~~K 158 (491)
T PRK14964 116 KFKVYIIDEVHMLSNSA--FNALLKTLEEPAPHVKFILATTEVKK 158 (491)
T ss_pred CceEEEEeChHhCCHHH--HHHHHHHHhCCCCCeEEEEEeCChHH
Confidence 67899999999995421 22223333 344567776664433
No 155
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=45.23 E-value=45 Score=41.19 Aligned_cols=110 Identities=23% Similarity=0.221 Sum_probs=64.5
Q ss_pred cEEEEeCCchh-HHHHHHHHhcCCC-CCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccc
Q 000739 500 ATLIVCPAPIL-AQWDAEITRHTRP-GSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1322)
Q Consensus 500 ~tLIV~P~SLl-~qW~~Ei~k~~~~-g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1322)
.+|||||.--+ .|=..|.++...- .+..|.+.-|..+.+... ..-.....|+|.|-+.|..++...+.
T Consensus 156 ~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~-----~kl~k~~niliATPGRLlDHlqNt~~----- 225 (543)
T KOG0342|consen 156 GVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEA-----DKLVKGCNILIATPGRLLDHLQNTSG----- 225 (543)
T ss_pred eEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHH-----HHhhccccEEEeCCchHHhHhhcCCc-----
Confidence 58999999754 5776665543321 156776666654432211 11112578999999999877653221
Q ss_pred hhhhhhcccCCCcchhccccceeeeeccCccccCCch--HHHHHHHHHhc-cceEEEEecc
Q 000739 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY-AKHRWCITGT 635 (1322)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~-a~~RwlLTGT 635 (1322)
+.-..-..+|+|||.+|-... --.-+.+..|+ ....++.|+|
T Consensus 226 ----------------f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT 270 (543)
T KOG0342|consen 226 ----------------FLFRNLKCLVLDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSAT 270 (543)
T ss_pred ----------------chhhccceeEeecchhhhhcccHHHHHHHHHhccccceeeEeeCC
Confidence 122222789999999985433 22223333343 3456778888
No 156
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=44.98 E-value=1e+02 Score=40.71 Aligned_cols=101 Identities=14% Similarity=0.083 Sum_probs=54.3
Q ss_pred CcEEEEeC-CchhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccc
Q 000739 499 GATLIVCP-APILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1322)
Q Consensus 499 ~~tLIV~P-~SLl~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1322)
..+|||.= .|+..+-..-+.+.-- -.+..|....... -....++-+++..+.|.+...
T Consensus 79 ~~VLvVShRrSL~~sL~~rf~~~~l---~gFv~Y~d~~~~~---------i~~~~~~rLivqIdSL~R~~~--------- 137 (824)
T PF02399_consen 79 KSVLVVSHRRSLTKSLAERFKKAGL---SGFVNYLDSDDYI---------IDGRPYDRLIVQIDSLHRLDG--------- 137 (824)
T ss_pred CeEEEEEhHHHHHHHHHHHHhhcCC---Ccceeeecccccc---------ccccccCeEEEEehhhhhccc---------
Confidence 45677643 4566666655554321 1334454433211 111357899999998876421
Q ss_pred hhhhhhcccCCCcchhccccceeeeeccCccccCCc-hH-------HHHHHHHHh--ccceEEEEeccC
Q 000739 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN-AA-------AATEMALRL--YAKHRWCITGTP 636 (1322)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~-~S-------k~~kal~~L--~a~~RwlLTGTP 636 (1322)
..+. .||.|||||+-.+-+. .| .....+..+ ++++.+++-||=
T Consensus 138 --------------~~l~--~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~l 190 (824)
T PF02399_consen 138 --------------SLLD--RYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADL 190 (824)
T ss_pred --------------cccc--ccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCC
Confidence 1121 3999999998543221 11 122222222 578888888873
No 157
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=44.64 E-value=50 Score=43.93 Aligned_cols=88 Identities=18% Similarity=0.135 Sum_probs=52.2
Q ss_pred CcEEEEeCCchh----HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCC
Q 000739 499 GATLIVCPAPIL----AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 574 (1322)
Q Consensus 499 ~~tLIV~P~SLl----~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~ 574 (1322)
+.+-||++.--+ ..|...+-+|+ ++.|-+..+.... ......-.+||+-+|-..+.-|+-.+.-.
T Consensus 118 ~~VhVvT~NdyLA~RD~e~m~pvy~~L---GLsvg~i~~~~~~-------~err~aY~~DItYgTn~e~gFDyLRDnm~- 186 (870)
T CHL00122 118 KGVHIVTVNDYLAKRDQEWMGQIYRFL---GLTVGLIQEGMSS-------EERKKNYLKDITYVTNSELGFDYLRDNMA- 186 (870)
T ss_pred CceEEEeCCHHHHHHHHHHHHHHHHHc---CCceeeeCCCCCh-------HHHHHhcCCCCEecCCccccccchhhccC-
Confidence 567888887655 47999999999 5888766543221 02223345687776655554443211100
Q ss_pred ccchhhhhhcccCCCcchhccccceeeeeccCccccC
Q 000739 575 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVE 611 (1322)
Q Consensus 575 ~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IK 611 (1322)
..+.......++++|+||+..+-
T Consensus 187 --------------~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 187 --------------LSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred --------------cChHHhhccccceeeeecchhhe
Confidence 00122345568899999998753
No 158
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=44.62 E-value=17 Score=44.22 Aligned_cols=77 Identities=23% Similarity=0.536 Sum_probs=46.6
Q ss_pred hhhhhcccccccccccccccccccccccccccccCcCC---CCCcccchhhhhhhcccccccccccccCcccccchhhhh
Q 000739 413 RVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSP---RGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELI 489 (1322)
Q Consensus 413 ~v~c~c~~~~~~~~~~g~~v~c~~c~~w~h~~cv~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~ 489 (1322)
+..|+|..- +...-.-.|+.|+.|+-|.|.+|---.. .|.. ....+...+..|.|..|..
T Consensus 129 C~C~iC~kf-D~~~n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s--------------~~g~~g~~d~~f~C~~C~~-- 191 (446)
T PF07227_consen 129 CMCCICSKF-DDNKNTCSWIGCDVCGHWCHLDCALRHELIGTGPS--------------VKGSIGTLDMQFHCRACGK-- 191 (446)
T ss_pred CCccccCCc-ccCCCCeeEEeccCCCceehhhhhcccccccCCcc--------------CCCCCccCceEEEccCCCC--
Confidence 445567653 2222345799999999999999952111 0100 0111122467899999975
Q ss_pred hccCCCCCCCcEEEEeCCchhHHHHHHHHhcCC
Q 000739 490 EATDSPVATGATLIVCPAPILAQWDAEITRHTR 522 (1322)
Q Consensus 490 ~~~~~~~~~~~tLIV~P~SLl~qW~~Ei~k~~~ 522 (1322)
++-++..|++-|....+
T Consensus 192 ----------------~seLlG~vk~vf~~ca~ 208 (446)
T PF07227_consen 192 ----------------TSELLGFVKKVFQTCAK 208 (446)
T ss_pred ----------------hhhHHHHHHHHHHHHHh
Confidence 24567888887776543
No 159
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=44.46 E-value=54 Score=41.10 Aligned_cols=112 Identities=16% Similarity=0.145 Sum_probs=66.1
Q ss_pred cEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccch
Q 000739 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1322)
Q Consensus 500 ~tLIV~P~S-Ll~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~ 578 (1322)
-.|||+|+- |..|-.+.|..-++...+++..+.|.-.... ...--....||||.|-+.|-.-+.... .
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqK-----QqRlL~~~p~IVVATPGRlweli~e~n------~ 333 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQK-----QQRLLNQRPDIVVATPGRLWELIEEDN------T 333 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHH-----HHHHHhcCCCEEEecchHHHHHHHhhh------h
Confidence 379999986 6788888888877766899998888532110 011111267899999888866543210 0
Q ss_pred hhhhhcccCCCcchhccccceeeeeccCccccC--CchHHHHHHHHHhc------cceEEEEecc
Q 000739 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVE--SNAAAATEMALRLY------AKHRWCITGT 635 (1322)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IK--N~~Sk~~kal~~L~------a~~RwlLTGT 635 (1322)
+-++ +. .-..+|||||.++- ..-.-.++.+..|. -...++.|+|
T Consensus 334 ----~l~~-------~k--~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSAT 385 (731)
T KOG0347|consen 334 ----HLGN-------FK--KVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSAT 385 (731)
T ss_pred ----hhhh-------hh--hceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEE
Confidence 0111 11 13478999999863 22233444444443 1234666666
No 160
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=41.92 E-value=11 Score=42.32 Aligned_cols=49 Identities=37% Similarity=0.864 Sum_probs=38.2
Q ss_pred hhhhhhhhccccccccccccccccccc--cc-ccccccccCcCCCCCcccchhhhhhhcccccccccccccCcccccchh
Q 000739 410 KRERVECICGAVSESRKYKGLWVQCDI--CD-AWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCD 486 (1322)
Q Consensus 410 ~~~~v~c~c~~~~~~~~~~g~~v~c~~--c~-~w~h~~cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~ 486 (1322)
.++.+.|.|..++- |..|.||. |. -|-|-.|||.... +.+..+|+.|.
T Consensus 218 e~e~lYCfCqqvSy-----GqMVaCDn~nCkrEWFH~~CVGLk~p------------------------PKG~WYC~eCk 268 (271)
T COG5034 218 EGEELYCFCQQVSY-----GQMVACDNANCKREWFHLECVGLKEP------------------------PKGKWYCPECK 268 (271)
T ss_pred cCceeEEEeccccc-----ccceecCCCCCchhheeccccccCCC------------------------CCCcEeCHHhH
Confidence 34678999998875 78899975 54 4999999997653 45778999996
Q ss_pred h
Q 000739 487 E 487 (1322)
Q Consensus 487 ~ 487 (1322)
.
T Consensus 269 ~ 269 (271)
T COG5034 269 K 269 (271)
T ss_pred h
Confidence 4
No 161
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=41.66 E-value=34 Score=46.09 Aligned_cols=137 Identities=13% Similarity=0.155 Sum_probs=80.0
Q ss_pred CCCCcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCCccccc-ccccchhhhccCcCEEEEehHHHhhhcccCCCC
Q 000739 496 VATGATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLS-DTSIMDISELVGADIVLTTYDVLKEDLSHDSDR 573 (1322)
Q Consensus 496 ~~~~~tLIV~P~-SLl~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~-~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~ 573 (1322)
...+-||||.|. ||+. +.+.+..+ ..++....++....... ............+.|+-+|-+.+...-.-
T Consensus 302 l~~gitvVISPL~SLm~---DQv~~L~~-~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l---- 373 (941)
T KOG0351|consen 302 LLGGVTVVISPLISLMQ---DQVTHLSK-KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGL---- 373 (941)
T ss_pred ccCCceEEeccHHHHHH---HHHHhhhh-cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccch----
Confidence 345689999997 5553 22322222 24666666665432100 00000112223678898999988764210
Q ss_pred CccchhhhhhcccCCCcchhcccc----ceeeeeccCccccCCch---HHHHHHHHH----hccceEEEEeccCCCCChh
Q 000739 574 HEGDRRFMRFQKRYPVIPTLLTRI----FWWRICLDEAQMVESNA---AAATEMALR----LYAKHRWCITGTPIQRKLD 642 (1322)
Q Consensus 574 ~~~~~~~~r~~kry~~~~s~L~~i----~w~rVILDEAH~IKN~~---Sk~~kal~~----L~a~~RwlLTGTPiqN~l~ 642 (1322)
. ..+... .-.++|+||||.+.... -.-++.+.. ....-.++||+|--.+--+
T Consensus 374 -------~----------~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~ 436 (941)
T KOG0351|consen 374 -------L----------ESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVRE 436 (941)
T ss_pred -------h----------hHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHH
Confidence 0 011111 14689999999986543 223333433 3455689999999989899
Q ss_pred hhHhhhhccCCCCCC
Q 000739 643 DLYGLLRFLKSSPFS 657 (1322)
Q Consensus 643 DL~sLL~FL~p~~f~ 657 (1322)
|+...|+.-+|..|.
T Consensus 437 DIi~~L~l~~~~~~~ 451 (941)
T KOG0351|consen 437 DVIRSLGLRNPELFK 451 (941)
T ss_pred HHHHHhCCCCcceec
Confidence 999999988887544
No 162
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=38.99 E-value=18 Score=49.03 Aligned_cols=44 Identities=32% Similarity=0.375 Sum_probs=31.2
Q ss_pred hhccCcCEEEEehHHHhhhcccCCCCCccchhhhhhcccCCCcchhccccceeeeeccCccccCCc
Q 000739 548 SELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN 613 (1322)
Q Consensus 548 ~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~ 613 (1322)
.....+|||||++..|-.++.... ..| -.+..+|+||||++...
T Consensus 427 ~~a~~AdivItNHalLl~dl~~~~--------------------~il--p~~~~lViDEAH~l~d~ 470 (928)
T PRK08074 427 NRAKFADLVITNHALLLTDLTSEE--------------------PLL--PSYEHIIIDEAHHFEEA 470 (928)
T ss_pred HHHhcCCEEEECHHHHHHHHhhhc--------------------ccC--CCCCeEEEECCchHHHH
Confidence 345678999999999998762100 012 23689999999998643
No 163
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=38.64 E-value=81 Score=42.31 Aligned_cols=20 Identities=20% Similarity=0.198 Sum_probs=15.3
Q ss_pred eeecCCCccHHHHHHHHHHH
Q 000739 361 ILADEMGLGKTVELLACIFA 380 (1322)
Q Consensus 361 ILADEMGLGKTvq~LALIl~ 380 (1322)
||.-..|+|||..+..|...
T Consensus 41 Lf~Gp~G~GKTt~A~~lAr~ 60 (824)
T PRK07764 41 LFSGPRGCGKTSSARILARS 60 (824)
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 56667899999988776643
No 164
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=38.33 E-value=1.3e+02 Score=36.04 Aligned_cols=121 Identities=18% Similarity=0.154 Sum_probs=69.3
Q ss_pred cEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccch
Q 000739 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1322)
Q Consensus 500 ~tLIV~P~S-Ll~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~ 578 (1322)
-.||+.|.. +-.|-.+.|.---.+-.+++.++.|....-. ....-..+.++|++|-+.+.-.+....+
T Consensus 77 FalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~-----qa~~L~~rPHvVvatPGRlad~l~sn~~------ 145 (442)
T KOG0340|consen 77 FALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIM-----QAAILSDRPHVVVATPGRLADHLSSNLG------ 145 (442)
T ss_pred eEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhh-----hhhhcccCCCeEecCccccccccccCCc------
Confidence 369999986 5567777666544444788888877643211 1222234578999999988765432100
Q ss_pred hhhhhcccCCCcchhccccceeeeeccCccccCCch-HHHHHHHH-Hhccc-eEEEEeccCCCCChhhh
Q 000739 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAATEMAL-RLYAK-HRWCITGTPIQRKLDDL 644 (1322)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~-Sk~~kal~-~L~a~-~RwlLTGTPiqN~l~DL 644 (1322)
...-.+. .-.++|+|||.++-+.. ......+. -++.. -.+++|+| |.+++..+
T Consensus 146 ----------~~~~~~~--rlkflVlDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSAT-itd~i~ql 201 (442)
T KOG0340|consen 146 ----------VCSWIFQ--RLKFLVLDEADRVLAGCFPDILEGIEECLPKPRQTLLFSAT-ITDTIKQL 201 (442)
T ss_pred ----------cchhhhh--ceeeEEecchhhhhccchhhHHhhhhccCCCccceEEEEee-hhhHHHHh
Confidence 0011122 23468999999987653 22222222 24433 67899998 33334433
No 165
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=38.25 E-value=20 Score=47.93 Aligned_cols=41 Identities=17% Similarity=0.101 Sum_probs=29.8
Q ss_pred hccCcCEEEEehHHHhhhcccCCCCCccchhhhhhcccCCCcchhccccceeeeeccCccccCC
Q 000739 549 ELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES 612 (1322)
Q Consensus 549 ~l~~~DVVITTYe~L~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN 612 (1322)
....+|||||++..|..++... ..+ -.++.+|+||||.+..
T Consensus 410 ~a~~AdivItNHall~~~~~~~---------------------~~~--p~~~~lIiDEAH~l~~ 450 (820)
T PRK07246 410 KAKTARLLITNHAYFLTRVQDD---------------------KDF--ARNKVLVFDEAQKLML 450 (820)
T ss_pred HHHhCCEEEEchHHHHHHHhhc---------------------cCC--CCCCEEEEECcchhHH
Confidence 3567899999999998865210 011 2478999999999973
No 166
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=37.20 E-value=50 Score=39.15 Aligned_cols=131 Identities=12% Similarity=0.179 Sum_probs=70.4
Q ss_pred CCcEEEEeCC-chhHHHHHHHHhcCCCCCCeEEEEcCCC-cccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCc
Q 000739 498 TGATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGAR-NSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1322)
Q Consensus 498 ~~~tLIV~P~-SLl~qW~~Ei~k~~~~g~l~V~vy~G~~-~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~ 575 (1322)
.|-+|||||. ||+..=.-.++..- +....++... +.............-.++.++-+|.+.+.+.-.
T Consensus 134 dg~alvi~plislmedqil~lkqlg----i~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~------- 202 (695)
T KOG0353|consen 134 DGFALVICPLISLMEDQILQLKQLG----IDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKK------- 202 (695)
T ss_pred CCceEeechhHHHHHHHHHHHHHhC----cchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHH-------
Confidence 3789999997 56653333344332 2222222211 110000000112233556778888887765321
Q ss_pred cchhhhhhcccCCCcchhccccceeeeeccCccccCCch---HHHHHHH----HHhccceEEEEeccCCCCChhhhHhhh
Q 000739 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA---AAATEMA----LRLYAKHRWCITGTPIQRKLDDLYGLL 648 (1322)
Q Consensus 576 ~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~---Sk~~kal----~~L~a~~RwlLTGTPiqN~l~DL~sLL 648 (1322)
-..+.. ..+....|.+|-+||.|...... -.-++++ +.++...-+.||+|...|-++|.-.+|
T Consensus 203 ---~mnkle-------ka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il 272 (695)
T KOG0353|consen 203 ---FMNKLE-------KALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDIL 272 (695)
T ss_pred ---HHHHHH-------HHhhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHH
Confidence 011112 23455668899999999754321 1123333 345677789999999999888877665
Q ss_pred h
Q 000739 649 R 649 (1322)
Q Consensus 649 ~ 649 (1322)
.
T Consensus 273 ~ 273 (695)
T KOG0353|consen 273 C 273 (695)
T ss_pred h
Confidence 3
No 167
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=35.45 E-value=2.7e+02 Score=37.66 Aligned_cols=41 Identities=17% Similarity=0.134 Sum_probs=29.8
Q ss_pred hccccceeeeeccCccccCCchHHHHHHHHHhccceEEEEeccCCC
Q 000739 593 LLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQ 638 (1322)
Q Consensus 593 ~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiq 638 (1322)
.+...+||++|+|||-.|--|.+ +--|.-..|.+|-|-+.|
T Consensus 791 lf~~R~FD~cIiDEASQI~lP~~-----LgPL~~s~kFVLVGDh~Q 831 (1100)
T KOG1805|consen 791 LFVNRQFDYCIIDEASQILLPLC-----LGPLSFSNKFVLVGDHYQ 831 (1100)
T ss_pred hhhccccCEEEEccccccccchh-----hhhhhhcceEEEeccccc
Confidence 46677899999999988765542 233556678888887655
No 168
>TIGR00269 conserved hypothetical protein TIGR00269.
Probab=34.23 E-value=66 Score=31.71 Aligned_cols=62 Identities=21% Similarity=0.408 Sum_probs=39.5
Q ss_pred cchHHHHHhHHHHHHHH----HHHHHHHHHHHHhhhcCCChhhhhhcccccccccCCCCCcccccccc
Q 000739 1063 SGLTYHIQSSLDQLEAS----RKTLLDRLLEIDQTMEKPKEEDMDRMRHCRICYGVGDGPICVHCELD 1126 (1322)
Q Consensus 1063 ~gL~~~L~~~ld~L~~~----R~~l~~~l~~l~~~~~~p~~~~ve~~~~C~~C~~~~~~~~C~~C~~~ 1126 (1322)
....-.+..+|++|++. +.+++.++..+.+..... ... .....|..|-....|.+|.+|++.
T Consensus 36 ~a~R~~~k~~L~~LE~~~P~~k~~i~~s~~~~~~~~~~~-~~~-~~~~~C~~CG~pss~~iC~~C~l~ 101 (104)
T TIGR00269 36 LSVRARIRDFLYDLENKKPGVKFSVLRGFEKLIPLLKEL-SEQ-EDLRRCERCGEPTSGRICKACKFL 101 (104)
T ss_pred CCchHHHHHHHHHHHHHCcChHHHHHHHHHHHHHHhhcc-ccc-ccCCcCCcCcCcCCccccHhhhhh
Confidence 44555677777777764 455566665555433210 011 125679999988889999999875
No 169
>PF13173 AAA_14: AAA domain
Probab=33.80 E-value=37 Score=34.24 Aligned_cols=41 Identities=17% Similarity=0.050 Sum_probs=25.7
Q ss_pred ceeeeeccCccccCCchHHHHHHHHHhccceEEEEeccCCCC
Q 000739 598 FWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQR 639 (1322)
Q Consensus 598 ~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN 639 (1322)
.-.+|++||+|++.+..... +.+..-....++++||.-...
T Consensus 61 ~~~~i~iDEiq~~~~~~~~l-k~l~d~~~~~~ii~tgS~~~~ 101 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDAL-KFLVDNGPNIKIILTGSSSSL 101 (128)
T ss_pred CCcEEEEehhhhhccHHHHH-HHHHHhccCceEEEEccchHH
Confidence 34579999999998643222 222222235699999985443
No 170
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=33.52 E-value=1.2e+02 Score=41.19 Aligned_cols=98 Identities=16% Similarity=0.202 Sum_probs=57.1
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccchhhhhhcccCCCc
Q 000739 511 AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVI 590 (1322)
Q Consensus 511 ~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~~~~r~~kry~~~ 590 (1322)
..|..-+-+|. ++.|-+....... ......-.+||+-.|-..|.-|+-.+. . ...
T Consensus 196 aewm~p~y~fl---GLtVg~i~~~~~~-------~~Rr~aY~~DItYgTn~EfGFDYLRDn--m-------------a~~ 250 (1025)
T PRK12900 196 KEWMNPVFEFH---GLSVGVILNTMRP-------EERREQYLCDITYGTNNEFGFDYLRDN--M-------------AGT 250 (1025)
T ss_pred HHHHHHHHHHh---CCeeeeeCCCCCH-------HHHHHhCCCcceecCCCccccccchhc--c-------------ccc
Confidence 48999999998 6888655332111 022334567887776555554432211 0 011
Q ss_pred chhccccceeeeeccCccccCCchHHHHHHHHHhccceEEEEeccCCCCChhhhH
Q 000739 591 PTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLY 645 (1322)
Q Consensus 591 ~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~ 645 (1322)
+..+.+..+.+.|+||+..|-=. .|+.-+++|| |+.+....+|
T Consensus 251 ~~~~vqR~~~faIVDEvDSvLID-----------eARTPLIISg-p~~~~~~~~y 293 (1025)
T PRK12900 251 PEEMVQRDFYFAIVDEVDSVLID-----------EARTPLIISG-PVPNADNSKF 293 (1025)
T ss_pred hhhhhccCCceEEEechhhhhhc-----------cccCceEEeC-CCCCcchHHH
Confidence 23466778999999999865311 3556689998 4444434443
No 171
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=33.51 E-value=2.7e+02 Score=32.57 Aligned_cols=125 Identities=17% Similarity=0.149 Sum_probs=73.4
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhc-cCcCEEEEehHHHhhhcccCCCCCcc
Q 000739 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISEL-VGADIVLTTYDVLKEDLSHDSDRHEG 576 (1322)
Q Consensus 499 ~~tLIV~P~S-Ll~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l-~~~DVVITTYe~L~~d~~~~~~~~~~ 576 (1322)
--.||+.|.- |-.|-..-+.....+-+++++..-|.+..+- +...+ -...+|.-|-..+-.-+..
T Consensus 96 tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~ge------dikkld~G~hvVsGtPGrv~dmikr------- 162 (400)
T KOG0328|consen 96 TQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGE------DIKKLDYGQHVVSGTPGRVLDMIKR------- 162 (400)
T ss_pred eeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccch------hhhhhcccceEeeCCCchHHHHHHh-------
Confidence 3589999986 4456666666554433566666666554321 11111 1123444444433322210
Q ss_pred chhhhhhcccCCCcchhccccceeeeeccCccccCCc--hHHHHHHHHHhc-cceEEEEeccCCCCChhhhHhhhhccCC
Q 000739 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN--AAAATEMALRLY-AKHRWCITGTPIQRKLDDLYGLLRFLKS 653 (1322)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~--~Sk~~kal~~L~-a~~RwlLTGTPiqN~l~DL~sLL~FL~p 653 (1322)
..|.-..-.++|||||..+-|. ..+.+...+.|+ +-..+++|+|- +.|+.-+..+..+
T Consensus 163 ---------------~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATl----p~eilemt~kfmt 223 (400)
T KOG0328|consen 163 ---------------RSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATL----PHEILEMTEKFMT 223 (400)
T ss_pred ---------------ccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccC----cHHHHHHHHHhcC
Confidence 1245556678999999987654 478888888887 66788899995 3444444454444
Q ss_pred CC
Q 000739 654 SP 655 (1322)
Q Consensus 654 ~~ 655 (1322)
+|
T Consensus 224 dp 225 (400)
T KOG0328|consen 224 DP 225 (400)
T ss_pred Cc
Confidence 43
No 172
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=31.63 E-value=1e+02 Score=41.75 Aligned_cols=101 Identities=17% Similarity=0.138 Sum_probs=57.6
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccchhhhhhcccCCCc
Q 000739 511 AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVI 590 (1322)
Q Consensus 511 ~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~~~~r~~kry~~~ 590 (1322)
..|...+.+|. ++.|-+....... .......-.+||+-+|-..|.-|+-.+.-. ..
T Consensus 227 aewmgply~fL---GLsvg~i~~~~~~------~~~rr~aY~~DItYgTn~EfGFDYLRDnm~---------------~~ 282 (1112)
T PRK12901 227 SEWMGPLYEFH---GLSVDCIDKHQPN------SEARRKAYNADITYGTNNEFGFDYLRDNMA---------------HS 282 (1112)
T ss_pred HHHHHHHHHHh---CCceeecCCCCCC------HHHHHHhCCCcceecCCCccccccchhccc---------------cc
Confidence 48999999998 6888765431100 002233445788777655555443221100 01
Q ss_pred chhccccceeeeeccCccccCCchHHHHHHHHHhccceEEEEeccCCCCChhhhHhh
Q 000739 591 PTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGL 647 (1322)
Q Consensus 591 ~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~l~DL~sL 647 (1322)
+..+.+..+.+.|+||+..|-=. .|+--+++||. ..+.-.++|..
T Consensus 283 ~~~~vqR~~~fAIVDEvDSILID-----------EARTPLIISGp-~~~~~~~~y~~ 327 (1112)
T PRK12901 283 PEDLVQRKHNYAIVDEVDSVLID-----------DARTPLIISGP-VPKGDDQEFEE 327 (1112)
T ss_pred hHhhhCcCCceeEeechhhhhhc-----------cccCcEEEeCC-CCCccHHHHHH
Confidence 23456677899999999865321 35556899984 44444444443
No 173
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=31.48 E-value=86 Score=41.94 Aligned_cols=142 Identities=14% Similarity=0.105 Sum_probs=76.6
Q ss_pred cCcccccchhhhhhccCCCCCCCcEEEEeCC-chhHHHHHHHHhcCCCCC-CeEEEEcCCCcccccccccchhhhccCcC
Q 000739 477 DGEHICQWCDELIEATDSPVATGATLIVCPA-PILAQWDAEITRHTRPGS-LKTCIYEGARNSSLSDTSIMDISELVGAD 554 (1322)
Q Consensus 477 ~~~~~C~~c~~~~~~~~~~~~~~~tLIV~P~-SLl~qW~~Ei~k~~~~g~-l~V~vy~G~~~~~~~~~~~~~~~~l~~~D 554 (1322)
...|+|+.|.+..- .....+-++-|+|+ +++.|=..++.--+.... .+.....|.-...+ . ...-.+.
T Consensus 538 GKTfisfY~iEKVL---ResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~sl~g~ltqEY------s-inp~nCQ 607 (1330)
T KOG0949|consen 538 GKTFISFYAIEKVL---RESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGVSLLGDLTQEY------S-INPWNCQ 607 (1330)
T ss_pred CceeccHHHHHHHH---hhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccchhhHhhhhHHh------c-CCchhce
Confidence 34577777764221 11234556667775 566666666543321001 11111112111100 0 0122466
Q ss_pred EEEEehHHHhhhcccCCCCCccchhhhhhcccCCCcchhccccceeeeeccCccccCCch-HHHHHHHHHhccceEEEEe
Q 000739 555 IVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAATEMALRLYAKHRWCIT 633 (1322)
Q Consensus 555 VVITTYe~L~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~-Sk~~kal~~L~a~~RwlLT 633 (1322)
|.||--+-+..-+-..+. .+ -.--+-.+||+||.|.|.|.. +....-+..|-..--++|+
T Consensus 608 VLITvPecleslLlspp~----------~q---------~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li~CP~L~LS 668 (1330)
T KOG0949|consen 608 VLITVPECLESLLLSPPH----------HQ---------KFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLIPCPFLVLS 668 (1330)
T ss_pred EEEEchHHHHHHhcCchh----------hh---------hhhhcceEEEechhhhccccccchHHHHHHHhcCCCeeEEe
Confidence 888888877765431000 00 001134689999999999876 5666666666667789999
Q ss_pred ccCCCCChhhhHhhhh
Q 000739 634 GTPIQRKLDDLYGLLR 649 (1322)
Q Consensus 634 GTPiqN~l~DL~sLL~ 649 (1322)
+| ++++..++..++
T Consensus 669 AT--igN~~l~qkWln 682 (1330)
T KOG0949|consen 669 AT--IGNPNLFQKWLN 682 (1330)
T ss_pred cc--cCCHHHHHHHHH
Confidence 99 566766666555
No 174
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=31.25 E-value=21 Score=45.57 Aligned_cols=57 Identities=21% Similarity=0.320 Sum_probs=39.1
Q ss_pred CCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCccchhhhhhcccCCCcchhccccceeeeec
Q 000739 525 SLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICL 604 (1322)
Q Consensus 525 ~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVIL 604 (1322)
.++.+.|+|++.. ...+++|+-.|..|-.+... . +.=..+.=..||+
T Consensus 308 ~~~~CPYY~SR~a------------vp~aqlV~LPYQ~LL~~stR---------~------------slgI~LkdsIvIi 354 (821)
T KOG1133|consen 308 ELRGCPYYASRRA------------VPQAQLVTLPYQLLLHESTR---------K------------SLGISLKDSIVII 354 (821)
T ss_pred hcCCCCchhhhhc------------cccccEEeccHHHHHhHHHH---------H------------hcCccccccEEEE
Confidence 6788889987543 35689999999999875321 0 1112234458999
Q ss_pred cCccccCCch
Q 000739 605 DEAQMVESNA 614 (1322)
Q Consensus 605 DEAH~IKN~~ 614 (1322)
||||++-+.-
T Consensus 355 DEAHNlidti 364 (821)
T KOG1133|consen 355 DEAHNLIDTI 364 (821)
T ss_pred echhHHHHHH
Confidence 9999986543
No 175
>PHA00673 acetyltransferase domain containing protein
Probab=29.54 E-value=78 Score=33.68 Aligned_cols=45 Identities=13% Similarity=0.040 Sum_probs=36.8
Q ss_pred ceeeeeccCccccCCchHHHHHHHHHh---ccceEEEEeccCCCCChh
Q 000739 598 FWWRICLDEAQMVESNAAAATEMALRL---YAKHRWCITGTPIQRKLD 642 (1322)
Q Consensus 598 ~w~rVILDEAH~IKN~~Sk~~kal~~L---~a~~RwlLTGTPiqN~l~ 642 (1322)
.-+-|++|+.|+=+.-.++..+.+... ...++|-+|+||-.|.++
T Consensus 87 ~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~ 134 (154)
T PHA00673 87 TTESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQ 134 (154)
T ss_pred EEEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchH
Confidence 356789999999988888887777653 567899999999999764
No 176
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.47 E-value=1.5e+02 Score=38.30 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=15.7
Q ss_pred eeecCCCccHHHHHHHHHHH
Q 000739 361 ILADEMGLGKTVELLACIFA 380 (1322)
Q Consensus 361 ILADEMGLGKTvq~LALIl~ 380 (1322)
|+.=.-|.|||..+.++.-+
T Consensus 42 Lf~Gp~G~GKtt~A~~lak~ 61 (576)
T PRK14965 42 LFTGARGVGKTSTARILAKA 61 (576)
T ss_pred EEECCCCCCHHHHHHHHHHh
Confidence 56667899999998887644
No 177
>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=28.66 E-value=41 Score=35.09 Aligned_cols=59 Identities=14% Similarity=0.037 Sum_probs=38.6
Q ss_pred CCCCCcccccCccccceeccCCCcccCCCCCCCCCcccceeecCCCccHHHHHHHHHHHhcC
Q 000739 322 SPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYTSSYVFGGILADEMGLGKTVELLACIFAHRK 383 (1322)
Q Consensus 322 ~plw~~~~~~d~~~~~yyn~~tG~is~~~~~~~~~vrGGILADEMGLGKTvq~LALIl~~~~ 383 (1322)
.|-|.....-..+..+|||.+|+.--++++.......|++ .||-=.-|.|+-|+..|..
T Consensus 8 P~~Wekr~Srs~gr~YyfN~~T~~SqWe~P~~t~~~~~~~---~~~~p~~Vr~sHlLVKH~~ 66 (163)
T KOG3259|consen 8 PPGWEKRMSRSSGRPYYFNTETNESQWERPSGTSKSGGKI---GQGEPARVRCSHLLVKHKG 66 (163)
T ss_pred CchhheeccccCCCcceeccccchhhccCCCccccccccc---cCCCccceeEEEEEEcccc
Confidence 4568877777778899999999988787776554433433 3333345555555555543
No 178
>PLN03025 replication factor C subunit; Provisional
Probab=27.18 E-value=87 Score=36.96 Aligned_cols=60 Identities=17% Similarity=0.147 Sum_probs=35.6
Q ss_pred ceeeeeccCccccCCchHHH-HHHHHHhccceEEEEeccCCCCChhhhHhhhhccCCCCCC
Q 000739 598 FWWRICLDEAQMVESNAAAA-TEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS 657 (1322)
Q Consensus 598 ~w~rVILDEAH~IKN~~Sk~-~kal~~L~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f~ 657 (1322)
.|..||+||+|.+-...... .+.+.......+++++.++...-+..|-+-...+...++.
T Consensus 99 ~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~ 159 (319)
T PLN03025 99 RHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLS 159 (319)
T ss_pred CeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCC
Confidence 58899999999985322111 1222222455678998887766556666555444444443
No 179
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=26.05 E-value=1.2e+02 Score=37.25 Aligned_cols=22 Identities=23% Similarity=0.233 Sum_probs=17.6
Q ss_pred cceeecCCCccHHHHHHHHHHH
Q 000739 359 GGILADEMGLGKTVELLACIFA 380 (1322)
Q Consensus 359 GGILADEMGLGKTvq~LALIl~ 380 (1322)
+=|+.-..|.|||..+.++...
T Consensus 38 a~Lf~Gp~G~GKt~lA~~lA~~ 59 (394)
T PRK07940 38 AWLFTGPPGSGRSVAARAFAAA 59 (394)
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4467788999999998887654
No 180
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=25.85 E-value=2.4e+02 Score=36.33 Aligned_cols=20 Identities=30% Similarity=0.328 Sum_probs=16.2
Q ss_pred eeecCCCccHHHHHHHHHHH
Q 000739 361 ILADEMGLGKTVELLACIFA 380 (1322)
Q Consensus 361 ILADEMGLGKTvq~LALIl~ 380 (1322)
|+.=+.|.|||..+.++..+
T Consensus 42 Lf~Gp~G~GKTt~Ar~lAk~ 61 (563)
T PRK06647 42 IFSGPRGVGKTSSARAFARC 61 (563)
T ss_pred EEECCCCCCHHHHHHHHHHh
Confidence 56678999999998887654
No 181
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=25.83 E-value=91 Score=36.30 Aligned_cols=20 Identities=25% Similarity=0.180 Sum_probs=15.4
Q ss_pred cceeecCCCccHHHHHHHHH
Q 000739 359 GGILADEMGLGKTVELLACI 378 (1322)
Q Consensus 359 GGILADEMGLGKTvq~LALI 378 (1322)
+-+|--+.|.|||..+-++.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia 79 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMA 79 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 44667789999999876654
No 182
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=25.81 E-value=1.7e+02 Score=39.18 Aligned_cols=86 Identities=14% Similarity=0.017 Sum_probs=48.9
Q ss_pred cEEEEeCCchh----HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCc
Q 000739 500 ATLIVCPAPIL----AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1322)
Q Consensus 500 ~tLIV~P~SLl----~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~ 575 (1322)
.+=||...--+ ..|...+.+|+ ++.|-+....... ......-.+||+-+|-..|.-|+-.+.-.
T Consensus 121 gVhVVTvNdYLA~RDae~mg~vy~fL---GLsvG~i~~~~~~-------~~rr~aY~~DItYgTn~E~gFDYLRDnm~-- 188 (925)
T PRK12903 121 GVIVSTVNEYLAERDAEEMGKVFNFL---GLSVGINKANMDP-------NLKREAYACDITYSVHSELGFDYLRDNMV-- 188 (925)
T ss_pred ceEEEecchhhhhhhHHHHHHHHHHh---CCceeeeCCCCCh-------HHHHHhccCCCeeecCcccchhhhhhccc--
Confidence 45555555433 48999999999 5887655432111 01223345788877766665544221100
Q ss_pred cchhhhhhcccCCCcchhccccceeeeeccCcccc
Q 000739 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMV 610 (1322)
Q Consensus 576 ~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~I 610 (1322)
.....+....+.++|+||+..|
T Consensus 189 -------------~~~~~~vqR~~~faIVDEVDSI 210 (925)
T PRK12903 189 -------------SSKEEKVQRGLNFCLIDEVDSI 210 (925)
T ss_pred -------------ccHHHhcCcccceeeeccchhe
Confidence 0012344566778899988875
No 183
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=25.13 E-value=2.3e+02 Score=36.36 Aligned_cols=56 Identities=14% Similarity=0.046 Sum_probs=37.9
Q ss_pred hhccccceeeeeccCccccC----CchHHHHHHHHH---hccceEEEEeccCCCCChhhhHhh
Q 000739 592 TLLTRIFWWRICLDEAQMVE----SNAAAATEMALR---LYAKHRWCITGTPIQRKLDDLYGL 647 (1322)
Q Consensus 592 s~L~~i~w~rVILDEAH~IK----N~~Sk~~kal~~---L~a~~RwlLTGTPiqN~l~DL~sL 647 (1322)
+.|....-.+|++||....- +.......+-.+ .....++++..||....-..++.+
T Consensus 128 ~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~la~~R~~tf~~~~K~~~~STPt~~~~~~I~~~ 190 (557)
T PF05876_consen 128 SNLRSRPARYLLLDEVDRYPDDVGGEGDPVELAEKRTKTFGSNRKILRISTPTIEGTSRIERL 190 (557)
T ss_pred cccccCCcCEEEEechhhccccCccCCCHHHHHHHHHhhhccCcEEEEeCCCCCCCCCHHHHH
Confidence 45778888999999999873 222333333333 346689999999998765455443
No 184
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.05 E-value=4.8e+02 Score=34.05 Aligned_cols=59 Identities=12% Similarity=0.131 Sum_probs=31.0
Q ss_pred ceeeeeccCccccCCchHHHHHHHHHh---ccceEEEEeccCCCCChhhhHhhhhccCCCCCCC
Q 000739 598 FWWRICLDEAQMVESNAAAATEMALRL---YAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI 658 (1322)
Q Consensus 598 ~w~rVILDEAH~IKN~~Sk~~kal~~L---~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f~~ 658 (1322)
.+..||+||+|++-.. .....++.| +....++++.|-...=+.-|-+-...+...++..
T Consensus 121 ~~KVvIIdea~~Ls~~--a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~ 182 (614)
T PRK14971 121 KYKIYIIDEVHMLSQA--AFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQV 182 (614)
T ss_pred CcEEEEEECcccCCHH--HHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCH
Confidence 5779999999999432 222222233 3455677766633332333444334444444443
No 185
>PF08824 Serine_rich: Serine rich protein interaction domain; InterPro: IPR014928 This is a serine rich protein that is found in the docking protein p130(cas) (Crk-associated substrate). The protein folds into a four helix bundle which is associated with protein-protein interactions []. ; PDB: 2L81_A 1Z23_A.
Probab=24.86 E-value=1.2e+02 Score=32.36 Aligned_cols=119 Identities=18% Similarity=0.225 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhc-ccccChhHHHHHHHhhcCCcchHHHHHHHHHHhhcccccc-ccccccccccCccchHH
Q 000739 990 SVAQQEFRKSYMQVCNALDDR-EKQYSAWWLEALHHAEGNKDFSAELIRKIEEAISGSLNKS-RALRTASRYRSISGLTY 1067 (1322)
Q Consensus 990 ~~a~~~~~~~~~~v~~~~~~~-~~~~~~Ww~~~l~~~~~~~~~~~~l~~~i~~~~~~~~~~~-~~~~~~~~~~~~~gL~~ 1067 (1322)
..|...+.+-.++|....+.+ +.-.+.|=. ...+|.+=+.-..-..+|+..+....... +...-|.++.+ ++|.-
T Consensus 4 d~A~e~L~~LQ~~v~~sVs~L~~fvs~~WR~--~~~le~~i~~Ir~a~~~v~~sl~~fl~FArga~~NA~~~~D-~~L~~ 80 (159)
T PF08824_consen 4 DAAMETLSRLQQEVESSVSNLMSFVSSNWRS--PESLERHINEIRAAVDRVRASLREFLDFARGALANASNLSD-RNLQA 80 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSSTT---CCCHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCHTTTTS--HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC--hHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccccc-hhHHH
Confidence 344444444555555444332 111234432 23344543333445666777776655544 23333344444 89999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhh----------cCCChhhhhhccccccc
Q 000739 1068 HIQSSLDQLEASRKTLLDRLLEIDQTM----------EKPKEEDMDRMRHCRIC 1111 (1322)
Q Consensus 1068 ~L~~~ld~L~~~R~~l~~~l~~l~~~~----------~~p~~~~ve~~~~C~~C 1111 (1322)
-|..+|..|+.+++.+.+.-++|+..- .+++++++++-.+|..-
T Consensus 81 kL~~qLq~l~ds~qiL~~~~q~Ld~~~Wsl~~La~~k~~~~~DdLDrfVmvaR~ 134 (159)
T PF08824_consen 81 KLRRQLQPLEDSYQILLQTSQALDSCNWSLDVLARDKPQNKPDDLDRFVMVART 134 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHTT--SS-TCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHhcCCCCCCcchHHHHHHHHHh
Confidence 999999999999999999988886421 22467788887777553
No 186
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=24.43 E-value=35 Score=40.56 Aligned_cols=40 Identities=30% Similarity=0.233 Sum_probs=29.2
Q ss_pred eeeeeccCccccCCchHHHHHH-HHHhccceEEEEeccCCCCCh
Q 000739 599 WWRICLDEAQMVESNAAAATEM-ALRLYAKHRWCITGTPIQRKL 641 (1322)
Q Consensus 599 w~rVILDEAH~IKN~~Sk~~ka-l~~L~a~~RwlLTGTPiqN~l 641 (1322)
=-.||+||||+ .+..+-+| +.+|-...+..+||.+.|=++
T Consensus 244 dAfVIlDEaQN---tT~~QmKMfLTRiGf~skmvItGD~tQiDL 284 (348)
T COG1702 244 DAFVILDEAQN---TTVGQMKMFLTRIGFESKMVITGDITQIDL 284 (348)
T ss_pred CeEEEEecccc---cchhhhceeeeeecCCceEEEEcCcccccC
Confidence 35799999997 33334443 345778899999999988654
No 187
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=24.36 E-value=1.1e+02 Score=38.66 Aligned_cols=90 Identities=20% Similarity=0.223 Sum_probs=56.6
Q ss_pred cEEEEeCC-chhHHHHHHHHhcC--CCCCCeEEEEcCCCcccccccccchhhhccCcCEEEEehHHHhhhcccCCCCCcc
Q 000739 500 ATLIVCPA-PILAQWDAEITRHT--RPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1322)
Q Consensus 500 ~tLIV~P~-SLl~qW~~Ei~k~~--~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~ 576 (1322)
..+|+.|. .|..|=..|..+.. +..++++.-+....... ..........||++|.|-..+...+...+.
T Consensus 211 ~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~----qk~a~~~~~k~dili~TP~ri~~~~~~~~~---- 282 (593)
T KOG0344|consen 211 RALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPS----QKPAFLSDEKYDILISTPMRIVGLLGLGKL---- 282 (593)
T ss_pred EEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchh----hccchhHHHHHHHHhcCHHHHHHHhcCCCc----
Confidence 57999997 57789999999987 43344444333332111 111233445789999988887776542110
Q ss_pred chhhhhhcccCCCcchhccccceeeeeccCccccCCc
Q 000739 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN 613 (1322)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~ 613 (1322)
.-.|..++| +|+|||.++-++
T Consensus 283 --------------~idl~~V~~--lV~dEaD~lfe~ 303 (593)
T KOG0344|consen 283 --------------NIDLSKVEW--LVVDEADLLFEP 303 (593)
T ss_pred --------------cchhheeee--EeechHHhhhCh
Confidence 013555555 688999999888
No 188
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=23.82 E-value=1.3e+02 Score=39.44 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=21.2
Q ss_pred CcEEEEeCCc-hhHHHHHHHHhcCC
Q 000739 499 GATLIVCPAP-ILAQWDAEITRHTR 522 (1322)
Q Consensus 499 ~~tLIV~P~S-Ll~qW~~Ei~k~~~ 522 (1322)
+|+|||+|.- +..||.+|++.|+|
T Consensus 55 ~p~Lvi~~n~~~A~ql~~el~~f~p 79 (655)
T TIGR00631 55 RPTLVIAHNKTLAAQLYNEFKEFFP 79 (655)
T ss_pred CCEEEEECCHHHHHHHHHHHHHhCC
Confidence 5899999985 55799999999997
No 189
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=23.42 E-value=94 Score=41.07 Aligned_cols=59 Identities=14% Similarity=0.089 Sum_probs=36.7
Q ss_pred cceeeeeccCccccCCchHHHHHHHHHh---ccceEEEEeccCCCCChhhhHhhhhccCCCCCC
Q 000739 597 IFWWRICLDEAQMVESNAAAATEMALRL---YAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS 657 (1322)
Q Consensus 597 i~w~rVILDEAH~IKN~~Sk~~kal~~L---~a~~RwlLTGTPiqN~l~DL~sLL~FL~p~~f~ 657 (1322)
-.|.++||||+|++.+.. ....++.| ....+++|+.|=.+.=+.-|.+-...+...++.
T Consensus 118 gr~KVIIIDEah~LT~~A--~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls 179 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHA--FNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMP 179 (830)
T ss_pred CCceEEEEeChhhCCHHH--HHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcC
Confidence 368899999999996432 22233444 456788998886665555555554444444444
No 190
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=23.37 E-value=1.1e+02 Score=37.53 Aligned_cols=106 Identities=21% Similarity=0.156 Sum_probs=67.1
Q ss_pred CcEEEEeCCc-hhHH---HHHHHHhcCCCCCCeEE-EEcCCCcccccccccchhhhc-cCcCEEEEehHHHhhhcccCCC
Q 000739 499 GATLIVCPAP-ILAQ---WDAEITRHTRPGSLKTC-IYEGARNSSLSDTSIMDISEL-VGADIVLTTYDVLKEDLSHDSD 572 (1322)
Q Consensus 499 ~~tLIV~P~S-Ll~q---W~~Ei~k~~~~g~l~V~-vy~G~~~~~~~~~~~~~~~~l-~~~DVVITTYe~L~~d~~~~~~ 572 (1322)
-+.||+.|+. |..| -..++.+++ .++.. +|+|.+... ....+ ...||||.|-..+..-...
T Consensus 91 ~RalilsptreLa~qtlkvvkdlgrgt---~lr~s~~~ggD~~ee-------qf~~l~~npDii~ATpgr~~h~~ve--- 157 (529)
T KOG0337|consen 91 LRALILSPTRELALQTLKVVKDLGRGT---KLRQSLLVGGDSIEE-------QFILLNENPDIIIATPGRLLHLGVE--- 157 (529)
T ss_pred cceeeccCcHHHHHHHHHHHHHhcccc---chhhhhhcccchHHH-------HHHHhccCCCEEEecCceeeeeehh---
Confidence 4789999986 4344 456666666 56665 666654331 22233 3689999887766532110
Q ss_pred CCccchhhhhhcccCCCcchhccccceeeeeccCccccCCc--hHHHHHHHHHhcc-ceEEEEeccC
Q 000739 573 RHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN--AAAATEMALRLYA-KHRWCITGTP 636 (1322)
Q Consensus 573 ~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~--~Sk~~kal~~L~a-~~RwlLTGTP 636 (1322)
..|.--.-.+||+|||.+|-.. .-+..+.+.+|+. ...+++|||-
T Consensus 158 -------------------m~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~~~~QTllfSatl 205 (529)
T KOG0337|consen 158 -------------------MTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLPESRQTLLFSATL 205 (529)
T ss_pred -------------------eeccccceeeeeehhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccC
Confidence 0122334568999999997543 4677777888864 4678899993
No 191
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=22.75 E-value=99 Score=33.86 Aligned_cols=39 Identities=23% Similarity=0.193 Sum_probs=24.8
Q ss_pred ceeeeeccCccccCCchHHHHHHHHHhcc-ceEEEEeccCCC
Q 000739 598 FWWRICLDEAQMVESNAAAATEMALRLYA-KHRWCITGTPIQ 638 (1322)
Q Consensus 598 ~w~rVILDEAH~IKN~~Sk~~kal~~L~a-~~RwlLTGTPiq 638 (1322)
..+.||+|||.++.+. .....+..+.. ..++++.|-|-|
T Consensus 93 ~~~vliVDEasmv~~~--~~~~ll~~~~~~~~klilvGD~~Q 132 (196)
T PF13604_consen 93 KKDVLIVDEASMVDSR--QLARLLRLAKKSGAKLILVGDPNQ 132 (196)
T ss_dssp STSEEEESSGGG-BHH--HHHHHHHHS-T-T-EEEEEE-TTS
T ss_pred cccEEEEecccccCHH--HHHHHHHHHHhcCCEEEEECCcch
Confidence 3459999999999654 34444444443 679999999876
No 192
>PF12387 Peptidase_C74: Pestivirus NS2 peptidase; InterPro: IPR022120 The pestivirus NS2 peptidase is responsible for single cleavage between NS2 and NS3 of the Bovine viral diarrhea virus 1 polyprotein, a cleavage that is correlated with cytopathogenicity []. The peptidase is activated by its interaction with 'J-domain protein interacting with viral protein' - Jiv. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0004252 serine-type endopeptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0017111 nucleoside-triphosphatase activity, 0070008 serine-type exopeptidase activity
Probab=22.07 E-value=81 Score=33.71 Aligned_cols=65 Identities=20% Similarity=0.461 Sum_probs=34.2
Q ss_pred cCccchH--HHHHhHHHHH---HHHHHHHHHHHHHHHhhhcCCChhhh-h-----hccccccc---ccC-CCCCcccccc
Q 000739 1060 RSISGLT--YHIQSSLDQL---EASRKTLLDRLLEIDQTMEKPKEEDM-D-----RMRHCRIC---YGV-GDGPICVHCE 1124 (1322)
Q Consensus 1060 ~~~~gL~--~~L~~~ld~L---~~~R~~l~~~l~~l~~~~~~p~~~~v-e-----~~~~C~~C---~~~-~~~~~C~~C~ 1124 (1322)
....||+ |+|+..+.+| ++-|++++.+--+=.....-|+---| . ...+|-+| -.+ -+|..|+-|-
T Consensus 103 eE~kGlKKFflLS~R~r~LiiKHKVrNe~v~~Wf~EeEvyGmpKi~~iika~tLsk~~hcilCtvCe~r~w~g~~CPKCG 182 (200)
T PF12387_consen 103 EESKGLKKFFLLSGRVRNLIIKHKVRNETVASWFGEEEVYGMPKIITIIKAATLSKSKHCILCTVCEGREWKGGNCPKCG 182 (200)
T ss_pred hhhcCcceeeeehhHHHHHHHHhHhhhHHHHHHcccccccCcchhhhhhhHHhccCCCceEEEeeeecCccCCCCCCccc
Confidence 3455666 8888888888 56667666665222222122332222 1 13445554 322 3567788884
No 193
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=21.73 E-value=7.3e+02 Score=26.23 Aligned_cols=21 Identities=29% Similarity=0.235 Sum_probs=17.1
Q ss_pred eeecCCCccHHHHHHHHHHHh
Q 000739 361 ILADEMGLGKTVELLACIFAH 381 (1322)
Q Consensus 361 ILADEMGLGKTvq~LALIl~~ 381 (1322)
|+.-.-|.||+-.+.+++...
T Consensus 23 L~~G~~g~gk~~~a~~~a~~l 43 (162)
T PF13177_consen 23 LFHGPSGSGKKTLALAFARAL 43 (162)
T ss_dssp EEECSTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 566677999999999988654
No 194
>CHL00181 cbbX CbbX; Provisional
Probab=21.46 E-value=1.3e+02 Score=35.05 Aligned_cols=18 Identities=28% Similarity=0.281 Sum_probs=14.8
Q ss_pred eeecCCCccHHHHHHHHH
Q 000739 361 ILADEMGLGKTVELLACI 378 (1322)
Q Consensus 361 ILADEMGLGKTvq~LALI 378 (1322)
+|-=..|.|||..+-++.
T Consensus 63 ll~G~pGtGKT~lAr~la 80 (287)
T CHL00181 63 SFTGSPGTGKTTVALKMA 80 (287)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 666789999999887765
No 195
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=21.23 E-value=69 Score=38.53 Aligned_cols=40 Identities=25% Similarity=0.182 Sum_probs=29.1
Q ss_pred ceeeeeccCccccCCchHHHHHHHHHhccceEEEEeccCCCC
Q 000739 598 FWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQR 639 (1322)
Q Consensus 598 ~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN 639 (1322)
+=..||+||||++--. ..-..+.+.-...++++||-|-|-
T Consensus 351 ~~~FiIIDEaQNLTph--eikTiltR~G~GsKIVl~gd~aQi 390 (436)
T COG1875 351 PDSFIIIDEAQNLTPH--ELKTILTRAGEGSKIVLTGDPAQI 390 (436)
T ss_pred ccceEEEehhhccCHH--HHHHHHHhccCCCEEEEcCCHHHc
Confidence 3357999999998533 333345566678899999999774
No 196
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.27 E-value=1.9e+02 Score=36.60 Aligned_cols=51 Identities=14% Similarity=0.085 Sum_probs=32.1
Q ss_pred hhHHHHHHHHhcCCCCCCeEEEEcCCCcccccc-cccchhhhccCcCEEEEehH
Q 000739 509 ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSD-TSIMDISELVGADIVLTTYD 561 (1322)
Q Consensus 509 Ll~qW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~-~~~~~~~~l~~~DVVITTYe 561 (1322)
=.+...+|+.+.+| ..++..+++....+... ......-...++||+|.|--
T Consensus 270 Gte~~~e~l~~~fp--~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~ 321 (505)
T TIGR00595 270 GTEQVEEELAKLFP--GARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQM 321 (505)
T ss_pred cHHHHHHHHHhhCC--CCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcc
Confidence 35777889999997 78999998875432210 11122223356889887653
Done!