Query 000739
Match_columns 1322
No_of_seqs 405 out of 3009
Neff 6.4
Searched_HMMs 29240
Date Tue Mar 26 16:24:45 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000739.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_511-515//hhsearch_pdb/000739hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 1.0 1 1 546.7 24.7 425 281-927 227-702 (800)
2 1z3i_X Similar to RAD54-like; 1.0 1 1 539.6 17.6 436 283-926 49-545 (644)
3 1z63_A Helicase of the SNF2/RA 1.0 1 1 495.6 24.2 413 282-924 30-468 (500)
4 3dmq_A RNA polymerase-associat 1.0 1 1 349.3 15.1 348 498-923 200-629 (968)
5 1wp9_A ATP-dependent RNA helic 1.0 1 1 250.1 20.4 368 499-923 53-489 (494)
6 2fwr_A DNA repair protein RAD2 1.0 1 1 232.3 17.0 309 499-922 134-467 (472)
7 1z5z_A Helicase of the SNF2/RA 1.0 1 1 208.3 8.3 204 687-925 11-240 (271)
8 4a2w_A RIG-I, retinoic acid in 1.0 1 1 204.2 23.9 359 498-915 296-755 (936)
9 4a2q_A RIG-I, retinoic acid in 1.0 1 1 195.3 24.6 356 498-915 296-755 (797)
10 3tbk_A RIG-I helicase domain; 1.0 1 1 183.8 24.1 365 498-915 52-513 (555)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=546.74 Aligned_cols=425 Identities=19% Similarity=0.211 Sum_probs=322.3
Q ss_pred CCCCCC-CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 898884-5888289999999999720199999831100124678877654347666301026789655788888887556
Q 000739 281 EDLPDL-LPLLRPYQRRAAYWMVQREKGDSASSSERERSQFFSPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYTSSYVFG 359 (1322)
Q Consensus 281 ~~~p~L-~~~LrPyQ~~aV~WMl~RE~~~~~~~~~~~~~~~~~Plw~~~~~~d~~~~~yyn~~tG~is~~~~~~~~~vrG 359 (1322)
.++|.+ ..+|||||++||+||+...... +|
T Consensus 227 ~~p~~~~~~~Lr~yQ~egv~~l~~~~~~~-------------------------------------------------~~ 257 (800)
T 3mwy_W 227 VQPPFIKGGELRDFQLTGINWMAFLWSKG-------------------------------------------------DN 257 (800)
T ss_dssp SCCTTCCSSCCCTHHHHHHHHHHHHHTTT-------------------------------------------------CC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCC-------------------------------------------------CC
T ss_conf 69986579975899999999999985138-------------------------------------------------99
Q ss_pred CEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 35463988627999999999813999998411122222330235678873222245320355431112465210132353
Q 000739 360 GILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQKVNLRRLKRERVECICGAVSESRKYKGLWVQCDICDA 439 (1322)
Q Consensus 360 GILADEMGLGKTve~LALIl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~c~c~~~~~~~~~~g~~v~c~~c~~ 439 (1322)
|||||+||||||+++|++|.......
T Consensus 258 ~ILademGlGKT~~ai~~i~~l~~~~------------------------------------------------------ 283 (800)
T 3mwy_W 258 GILADEMGLGKTVQTVAFISWLIFAR------------------------------------------------------ 283 (800)
T ss_dssp EEECCCTTSSTTHHHHHHHHHHHHHH------------------------------------------------------
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHC------------------------------------------------------
T ss_conf 89982787532999999999999860------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHH
Q ss_conf 44566567688987654036663101356544220256854332000121016898999938999188116889999984
Q 000739 440 WQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITR 519 (1322)
Q Consensus 440 w~h~~cv~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~~~~~~~~~~~~tLIV~P~SLl~QW~~Ei~k 519 (1322)
...+++|||||.+++.||.+||.+
T Consensus 284 --------------------------------------------------------~~~~~~LIV~P~sll~qW~~E~~~ 307 (800)
T 3mwy_W 284 --------------------------------------------------------RQNGPHIIVVPLSTMPAWLDTFEK 307 (800)
T ss_dssp --------------------------------------------------------SCCSCEEEECCTTTHHHHHHHHHH
T ss_pred --------------------------------------------------------CCCCCEEEEECCHHHHHHHHHHHH
T ss_conf --------------------------------------------------------779988999880389999999999
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCC-------CCHHHHCCCCCEEEEEHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCH
Q ss_conf 389999729997188766554422-------1000000386799983587852104677777650234321025787200
Q 000739 520 HTRPGSLKTCIYEGARNSSLSDTS-------IMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPT 592 (1322)
Q Consensus 520 ~~~~g~l~V~vy~G~~~~~~~~~~-------~~~~~~l~~~DIVITTYetL~~d~~~~~~~~~~~~~~~r~~kry~~~~s 592 (1322)
|+| .+++.+|+|....+..... .........++|+||||+++.++. .
T Consensus 308 ~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~------------------------~ 361 (800)
T 3mwy_W 308 WAP--DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDR------------------------A 361 (800)
T ss_dssp HST--TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTH------------------------H
T ss_pred HCC--CCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECHHHHHHHH------------------------H
T ss_conf 779--96499982777778898887762263001344566788990699998649------------------------9
Q ss_pred HCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCC
Q ss_conf 00022200164067433478047999999984046099995369989923457432101799999846779987188878
Q 000739 593 LLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYEN 672 (1322)
Q Consensus 593 ~L~~i~w~rVILDEAH~iKN~~Sk~~kal~~L~a~~Rw~LTGTPIqN~l~DL~sLL~FL~p~~l~~~~~f~~~~~~p~~~ 672 (1322)
.|..+.|++||+||||++||+.++.++++..+++.+||+|||||++|++.|||++++||.|+.|+....|..... ..
T Consensus 362 ~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~---~~ 438 (800)
T 3mwy_W 362 ELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQ---DE 438 (800)
T ss_dssp HHHTSEEEEEEETTGGGGCCSSSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CC---TT
T ss_pred HHHCCCCCEEEHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHCCCCC---CH
T ss_conf 983377325641344441471019999999752243897227857799999999999858663674344232223---14
Q ss_pred CCCCHHHHHHHHHHHHHEECCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 86005899999864440231433223568999971899993299999999999999988799999999998775205999
Q 000739 673 GDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPG 752 (1322)
Q Consensus 673 g~~~~~~~L~~lL~~imLRRtK~dV~~el~LPpk~e~vv~v~lS~~Er~~Y~~~~e~~~~~~~~~~~~~~~~~~~r~~~g 752 (1322)
.....+..|+.+++|+|+||+|.+|... |||+.+.+++|+||+.|+.+|+.+..........
T Consensus 439 ~~~~~~~~L~~~l~p~~lRR~k~dv~~~--LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~---------------- 500 (800)
T 3mwy_W 439 EQEEYIHDLHRRIQPFILRRLKKDVEKS--LPSKTERILRVELSDVQTEYYKNILTKNYSALTA---------------- 500 (800)
T ss_dssp HHHHHHHHHHHTTGGGEEECCGGGGTTT--SCCEEEEEEEECCCHHHHHHHHHHHHHCCC--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHH----------------
T ss_conf 6899999999997577753208766431--6882799997079999999999999999999861----------------
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC----CCCCCH-------------HHHHHHHHHHHH
Q ss_conf 888887657200246599999999999998068868886633346----999999-------------999999999989
Q 000739 753 HASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQ----QSPLSM-------------DEILMVLIGKTK 815 (1322)
Q Consensus 753 ~~~~~~~~~~~l~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~~~----~~~~tm-------------eelL~~Li~~~~ 815 (1322)
+ .......+++.+++||++|+||.++........ ....+. -.+|..++.+..
T Consensus 501 -----~------~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~ 569 (800)
T 3mwy_W 501 -----G------AKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLK 569 (800)
T ss_dssp -----------------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred -----C------CCCCHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf -----0------35454469999999998735865423557899886156655577888876642769999999999975
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH--HHHHHHHHHHCCCCCCC--------------------C
Q ss_conf 853440240566563586799999967687879---9999--99999996100689876--------------------6
Q 000739 816 IEGEEALRKLVMALNGLAGIALIEKNLSQAVSL---YKEA--MAVVEEHSEDFRLDPLL--------------------N 870 (1322)
Q Consensus 816 ~e~~ea~rkvlifsq~la~L~iie~~l~~a~~~---y~~~--l~~~~e~~~~f~~D~~~--------------------~ 870 (1322)
+..+++|||+|+..++++|+..+...... +.+. ...+++.++.|+..... .
T Consensus 570 ----~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~ 645 (800)
T 3mwy_W 570 ----KDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTAD 645 (800)
T ss_dssp ----TTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCC
T ss_pred ----HCCCEEEEEECHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCC
T ss_conf ----2798189996359999999999986799789996999999999999996089998259997454456787760163
Q ss_pred EEEEECCCCCCHHHHHHHHH-HHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHCCCCC
Q ss_conf 03675278778001542445-2103788863899811179621020457532002445
Q 000739 871 IHLHHNLTEILPMVANCATE-LSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSRE 927 (1322)
Q Consensus 871 lh~~~nl~~wnpa~e~QA~d-~hRIGQ~~~V~vyrlit~~TiEE~~~~~~kr~~~~~~ 927 (1322)
.+++++.+ |||+.+.||++ ||||||+++|.||||+++||+||.|++.+++|.....
T Consensus 646 ~VI~~D~~-wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l~~ 702 (800)
T 3mwy_W 646 TVVIFDSD-WNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEY 702 (800)
T ss_dssp EEEESSCC-SCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTSCC
T ss_pred EEEEECCC-CCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 68994687-8811689999998855898637999986199899999999999888999
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=539.64 Aligned_cols=436 Identities=18% Similarity=0.241 Sum_probs=322.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 88845888289999999999720199999831100124678877654347666301026789655788888887556354
Q 000739 283 LPDLLPLLRPYQRRAAYWMVQREKGDSASSSERERSQFFSPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYTSSYVFGGIL 362 (1322)
Q Consensus 283 ~p~L~~~LrPyQ~~aV~WMl~RE~~~~~~~~~~~~~~~~~Plw~~~~~~d~~~~~yyn~~tG~is~~~~~~~~~vrGGIL 362 (1322)
.|.+...|||||++||.||+....+... ...+||||
T Consensus 49 ~p~l~~~LrpyQ~~gv~~l~~~~~~~~~--------------------------------------------~~~~g~IL 84 (644)
T 1z3i_X 49 DPVLSKVLRPHQREGVKFLWDCVTGRRI--------------------------------------------ENSYGCIM 84 (644)
T ss_dssp CHHHHTTCCHHHHHHHHHHHHHHTTSSS--------------------------------------------TTCCEEEE
T ss_pred CHHHHHCCCHHHHHHHHHHHHHHHCCCC--------------------------------------------CCCCCEEE
T ss_conf 8564003519999999999984233544--------------------------------------------58887596
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 63988627999999999813999998411122222330235678873222245320355431112465210132353445
Q 000739 363 ADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQKVNLRRLKRERVECICGAVSESRKYKGLWVQCDICDAWQH 442 (1322)
Q Consensus 363 ADEMGLGKTve~LALIl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~c~c~~~~~~~~~~g~~v~c~~c~~w~h 442 (1322)
||+||||||+++|++|.......+.
T Consensus 85 ad~mGlGKT~~~i~~i~~l~~~~~~------------------------------------------------------- 109 (644)
T 1z3i_X 85 ADEMGLGKTLQCITLIWTLLKQSPD------------------------------------------------------- 109 (644)
T ss_dssp CCCTTSCHHHHHHHHHHHHHHCCTT-------------------------------------------------------
T ss_pred EECCCCHHHHHHHHHHHHHHHHCCC-------------------------------------------------------
T ss_conf 1078742999999999999974866-------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCC
Q ss_conf 66567688987654036663101356544220256854332000121016898999938999188116889999984389
Q 000739 443 ADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTR 522 (1322)
Q Consensus 443 ~~cv~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~~~~~~~~~~~~tLIV~P~SLl~QW~~Ei~k~~~ 522 (1322)
.....+++|||||.+++.||.+||.+|++
T Consensus 110 ---------------------------------------------------~~p~~~~~LiV~P~sll~qW~~E~~~~~~ 138 (644)
T 1z3i_X 110 ---------------------------------------------------CKPEIDKVIVVSPSSLVRNWYNEVGKWLG 138 (644)
T ss_dssp ---------------------------------------------------SSCSCSCEEEEECHHHHHHHHHHHHHHHG
T ss_pred ---------------------------------------------------CCCCCCCEEEEECHHHHHHHHHHHHHHCC
T ss_conf ---------------------------------------------------56777857999658998879999999758
Q ss_pred CCCCEEEEECCCCCCCCCCC--CC-CHHHHCCCCCEEEEEHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCHHCCCCCE
Q ss_conf 99972999718876655442--21-0000003867999835878521046777776502343210257872000002220
Q 000739 523 PGSLKTCIYEGARNSSLSDT--SI-MDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFW 599 (1322)
Q Consensus 523 ~g~l~V~vy~G~~~~~~~~~--~~-~~~~~l~~~DIVITTYetL~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w 599 (1322)
. .+.++.++|......... .. ........++|+||||++++.+.. .+....|
T Consensus 139 ~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~------------------------~l~~~~~ 193 (644)
T 1z3i_X 139 G-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE------------------------VLHKGKV 193 (644)
T ss_dssp G-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT------------------------TTTTSCC
T ss_pred C-CEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHH------------------------HHHCCCC
T ss_conf 8-72599980898899999999998733777787579963899876578------------------------7504886
Q ss_pred EEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCC-----
Q ss_conf 016406743347804799999998404609999536998992345743210179999984677998718887886-----
Q 000739 600 WRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGD----- 674 (1322)
Q Consensus 600 ~rVILDEAH~iKN~~Sk~~kal~~L~a~~Rw~LTGTPIqN~l~DL~sLL~FL~p~~l~~~~~f~~~~~~p~~~g~----- 674 (1322)
++||+||||++||+.++.++++..+++.+||+|||||++|++.|||++++||.|++|++...|.+.|..|+..+.
T Consensus 194 ~~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~ 273 (644)
T 1z3i_X 194 GLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADAS 273 (644)
T ss_dssp CEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCC
T ss_pred CEEEEECCEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHCCCCCCC
T ss_conf 57998786224780459999998555673799846734588999999998618876899999998632615416776778
Q ss_pred -------CCHHHHHHHHHHHHHEECCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -------0058999998644402314332235689999718999932999999999999999887999999999987752
Q 000739 675 -------VGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILK 747 (1322)
Q Consensus 675 -------~~~~~~L~~lL~~imLRRtK~dV~~el~LPpk~e~vv~v~lS~~Er~~Y~~~~e~~~~~~~~~~~~~~~~~~~ 747 (1322)
...+..|+.++.+||+||+|.++... ||++.+.+++|+||+.|+.+|+.+.+.... .
T Consensus 274 ~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~--LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~--------------~ 337 (644)
T 1z3i_X 274 DKDRAAGEQKLQELISIVNRCLIRRTSDILSKY--LPVKIEQVVCCNLTPLQKELYKLFLKQAKP--------------V 337 (644)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHEECCCGGGGGGT--SCCEEEEEEEECCCHHHHHHHHHHHHHHCG--------------G
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCEEEEEEECCCHHHHHHHHHHHHHHHH--------------H
T ss_conf 889999999999999998899987108767642--798369999837998999999999998999--------------9
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC-------CC----CCC---------CCCCHHHHH
Q ss_conf 0599988888765720024659999999999999806886888663-------33----469---------999999999
Q 000739 748 RNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGL-------RS----LQQ---------SPLSMDEIL 807 (1322)
Q Consensus 748 r~~~g~~~~~~~~~~~l~~~~~~~iL~~L~rLRQiC~HP~L~~~~~-------~~----~~~---------~~~tmeelL 807 (1322)
... ..+ .....++..+++|||+|+||.++.... .. ... .......++
T Consensus 338 ~~~-----~~g--------~~~~~~l~~l~~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l 404 (644)
T 1z3i_X 338 ESL-----QTG--------KISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVL 404 (644)
T ss_dssp GSS-----CTT--------CCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHH
T ss_pred HHH-----HCC--------CCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
T ss_conf 987-----627--------6214599999999999579998888874154003557764542111000570117489999
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH--HHHHHHHHHHCCCCCCC---CE--------
Q ss_conf 99999989853440240566563586799999967687879---9999--99999996100689876---60--------
Q 000739 808 MVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSL---YKEA--MAVVEEHSEDFRLDPLL---NI-------- 871 (1322)
Q Consensus 808 ~~Li~~~~~e~~ea~rkvlifsq~la~L~iie~~l~~a~~~---y~~~--l~~~~e~~~~f~~D~~~---~l-------- 871 (1322)
..++...... ..+++++|+|+..++++|+..+...... +.+. ...+++.++.|+.+... .+
T Consensus 405 ~~ll~~~~~~---~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~ 481 (644)
T 1z3i_X 405 DYILAMTRTT---TSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGC 481 (644)
T ss_dssp HHHHHHHHHH---CCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCT
T ss_pred HHHHHHHHHC---CCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCC
T ss_conf 9999998646---9987999980599999999999977997899839999999999999963999996799984455667
Q ss_pred ---------EEEECCCCCCHHHHHHHHH-HHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHCCCC
Q ss_conf ---------3675278778001542445-210378886389981117962102045753200244
Q 000739 872 ---------HLHHNLTEILPMVANCATE-LSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSR 926 (1322)
Q Consensus 872 ---------h~~~nl~~wnpa~e~QA~d-~hRIGQ~~~V~vyrlit~~TiEE~~~~~~kr~~~~~ 926 (1322)
+++++. +|||+.+.||++ +|||||+++|.||||++.|||||+|++++.+|+--.
T Consensus 482 Glnl~~a~~Vi~~d~-~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K~~l~ 545 (644)
T 1z3i_X 482 GLNLIGANRLVMFDP-DWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALS 545 (644)
T ss_dssp TCCCTTEEEEEECSC-CSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCEEEEECC-CCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHH
T ss_conf 846523898999799-9981379999884032289872699998879889999999999999999
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=1.00 E-value=1 Score=495.57 Aligned_cols=413 Identities=25% Similarity=0.352 Sum_probs=324.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 98884588828999999999972019999983110012467887765434766630102678965578888888755635
Q 000739 282 DLPDLLPLLRPYQRRAAYWMVQREKGDSASSSERERSQFFSPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYTSSYVFGGI 361 (1322)
Q Consensus 282 ~~p~L~~~LrPyQ~~aV~WMl~RE~~~~~~~~~~~~~~~~~Plw~~~~~~d~~~~~yyn~~tG~is~~~~~~~~~vrGGI 361 (1322)
.++.+..+|+|||++|+.||+..+..+ +|||
T Consensus 30 ~p~~~~~~L~~~Q~~~v~~l~~~~~~~-------------------------------------------------~~~i 60 (500)
T 1z63_A 30 EPYNIKANLRPYQIKGFSWMRFMNKLG-------------------------------------------------FGIC 60 (500)
T ss_dssp CCCSCSSCCCHHHHHHHHHHHHHHHTT-------------------------------------------------CCEE
T ss_pred CCHHHHCCCHHHHHHHHHHHHHHHHCC-------------------------------------------------CCEE
T ss_conf 983320033699999999999974179-------------------------------------------------9889
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 46398862799999999981399999841112222233023567887322224532035543111246521013235344
Q 000739 362 LADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQKVNLRRLKRERVECICGAVSESRKYKGLWVQCDICDAWQ 441 (1322)
Q Consensus 362 LADEMGLGKTve~LALIl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~c~c~~~~~~~~~~g~~v~c~~c~~w~ 441 (1322)
|||+||+|||+++++++......
T Consensus 61 lad~~GlGKT~~ai~~i~~~~~~--------------------------------------------------------- 83 (500)
T 1z63_A 61 LADDMGLGKTLQTIAVFSDAKKE--------------------------------------------------------- 83 (500)
T ss_dssp ECCCTTSCHHHHHHHHHHHHHHT---------------------------------------------------------
T ss_pred EEECCCCCHHHHHHHHHHHHHHC---------------------------------------------------------
T ss_conf 98089973899999999988755---------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHCC
Q ss_conf 56656768898765403666310135654422025685433200012101689899993899918811688999998438
Q 000739 442 HADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHT 521 (1322)
Q Consensus 442 h~~cv~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~~~~~~~~~~~~tLIV~P~SLl~QW~~Ei~k~~ 521 (1322)
...+++|||||.+++.||.+||.+|+
T Consensus 84 ------------------------------------------------------~~~~~~LIv~P~~l~~qw~~e~~~~~ 109 (500)
T 1z63_A 84 ------------------------------------------------------NELTPSLVICPLSVLKNWEEELSKFA 109 (500)
T ss_dssp ------------------------------------------------------TCCSSEEEEECSTTHHHHHHHHHHHC
T ss_pred ------------------------------------------------------CCCCCEEEECCHHHHHHHHHHHHHHC
T ss_conf ------------------------------------------------------89997899903899999999999977
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCHHHHCCCCCEEEEEHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCHHCCCCCEEE
Q ss_conf 99997299971887665544221000000386799983587852104677777650234321025787200000222001
Q 000739 522 RPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWR 601 (1322)
Q Consensus 522 ~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DIVITTYetL~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~r 601 (1322)
+ .+++.+++|.... .....++|+|+||+++.++. .+....|++
T Consensus 110 ~--~~~v~~~~g~~~~----------~~~~~~~ivi~t~~~l~~~~-------------------------~l~~~~~~~ 152 (500)
T 1z63_A 110 P--HLRFAVFHEDRSK----------IKLEDYDIILTTYAVLLRDT-------------------------RLKEVEWKY 152 (500)
T ss_dssp T--TSCEEECSSSTTS----------CCGGGSSEEEEEHHHHTTCH-------------------------HHHTCCEEE
T ss_pred C--CCEEEEEECCCHH----------CCCCCCCEEEEEHHHHHCCC-------------------------HHCCCCCCE
T ss_conf 9--9559997267021----------00357768996379972630-------------------------211787287
Q ss_pred EECCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf 64067433478047999999984046099995369989923457432101799999846779987188878860058999
Q 000739 602 ICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDVGAMEFT 681 (1322)
Q Consensus 602 VILDEAH~iKN~~Sk~~kal~~L~a~~Rw~LTGTPIqN~l~DL~sLL~FL~p~~l~~~~~f~~~~~~p~~~g~~~~~~~L 681 (1322)
||+||||+++|..++.++++..+++.++|+|||||++|++.|||++++||.|++|++...|...|..|+..++....+.|
T Consensus 153 vIvDEaH~~kn~~~~~~~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l 232 (500)
T 1z63_A 153 IVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEEL 232 (500)
T ss_dssp EEEETGGGGSCTTSHHHHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 99808410178768999999960047189974677779999999999985877579989999985251114668899999
Q ss_pred HHHHHHHHEECCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99864440231433223568999971899993299999999999999988799999999998775205999888887657
Q 000739 682 HKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYN 761 (1322)
Q Consensus 682 ~~lL~~imLRRtK~dV~~el~LPpk~e~vv~v~lS~~Er~~Y~~~~e~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~ 761 (1322)
+.++.++++||+|.+......||++.+.+++++|++.|+.+|+.+.+...... . .
T Consensus 233 ~~~l~~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~-----------~-----------~--- 287 (500)
T 1z63_A 233 KAIISPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNI-----------D-----------S--- 287 (500)
T ss_dssp HHHHTTTEECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTT-----------T-----------T---
T ss_pred HHHHHHHEEEECCCCCCHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHH-----------H-----------H---
T ss_conf 99976674550255424112299975899981899999999999999999999-----------8-----------6---
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 20024659999999999999806886888663334699999999999999998985344024056656358679999996
Q 000739 762 PIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKN 841 (1322)
Q Consensus 762 ~~l~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~~~~~~~tmeelL~~Li~~~~~e~~ea~rkvlifsq~la~L~iie~~ 841 (1322)
.........++..+++|||+|+||.+...+..... ....-+.+..++.+...++ +++++|+++..+++.+...
T Consensus 288 -~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~--~s~K~~~l~~~l~~~~~~~----~k~lvF~~~~~~~~~l~~~ 360 (500)
T 1z63_A 288 -VTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVR--RSGKMIRTMEIIEEALDEG----DKIAIFTQFVDMGKIIRNI 360 (500)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCST--TCHHHHHHHHHHHHHHTTT----CCEEEECSCHHHHHHHHHH
T ss_pred -HHCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCHHH--CCHHHHHHHHHHHHHHCCC----CCEEEEEEHHHHHHHHHHH
T ss_conf -42321067999999999988179988438520111--1552999999999987268----8689997218899999999
Q ss_pred HHHH----HHHHHHH--HHHHHHHHHHCCCCCCC-------------------CEEEEECCCCCCHHHHHHHHH-HHCCC
Q ss_conf 7687----8799999--99999996100689876-------------------603675278778001542445-21037
Q 000739 842 LSQA----VSLYKEA--MAVVEEHSEDFRLDPLL-------------------NIHLHHNLTEILPMVANCATE-LSQNE 895 (1322)
Q Consensus 842 l~~a----~~~y~~~--l~~~~e~~~~f~~D~~~-------------------~lh~~~nl~~wnpa~e~QA~d-~hRIG 895 (1322)
+... +..+.+. ...+++.++.|+.++.. ...+++++ +|||+...||.+ +||+|
T Consensus 361 l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~-~~~~~~~~Q~~gR~~R~G 439 (500)
T 1z63_A 361 IEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDR-WWNPAVEDQATDRVYRIG 439 (500)
T ss_dssp HHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSC-CSCC---CHHHHTTTTTT
T ss_pred HHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECC-CCCCCHHHHHHHHHHHCC
T ss_conf 9885388769997999999999999996089998779995333557774455888999589-989545899999888738
Q ss_pred CCCCEEEEECCCCCCCCCCCHHHHHHHCC
Q ss_conf 88863899811179621020457532002
Q 000739 896 QHFPGCSEKAFKIHSIETCDENARKCQRV 924 (1322)
Q Consensus 896 Q~~~V~vyrlit~~TiEE~~~~~~kr~~~ 924 (1322)
|+++|.||+|++++|+||.+++++++|.-
T Consensus 440 q~~~v~v~~lv~~~tiee~i~~~~~~K~~ 468 (500)
T 1z63_A 440 QTRNVIVHKLISVGTLEEKIDQLLAFKRS 468 (500)
T ss_dssp TTSCEEEEEEEETTSHHHHTHHHHTTCSS
T ss_pred CCCEEEEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 98706999977489899999999999999
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=1.00 E-value=1 Score=349.34 Aligned_cols=348 Identities=14% Similarity=0.134 Sum_probs=236.1
Q ss_pred CCCEEEEECCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCHHHHCCCCCEEEEEHHHHHHHCCCCCCCCCCC
Q ss_conf 99389991881168899999843899997299971887665544221000000386799983587852104677777650
Q 000739 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1322)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DIVITTYetL~~d~~~~~~~~~~~ 577 (1322)
.+++|||||.+++.||..||.+++ ++++.+|+|...... .......+..++|+|+||+++.++...
T Consensus 200 ~~rvLIVvP~sLl~Qw~~E~~~~f---~l~v~v~~~~~~~~~---~~~~~~~~~~~dIvI~T~~~L~~~~~~-------- 265 (968)
T 3dmq_A 200 AERVLIIVPETLQHQWLVEMLRRF---NLRFALFDDERYAEA---QHDAYNPFDTEQLVICSLDFARRSKQR-------- 265 (968)
T ss_dssp CCCEEEECCTTTHHHHHHHHHHHS---CCCCEECCHHHHHHH---HHTTCSSSTTCSEEEECHHHHHTSTTT--------
T ss_pred CCEEEEEECHHHHHHHHHHHHHHH---CCCEEEECCCHHHHH---HHHCCCCCCCCCEEEECHHHHHHCHHH--------
T ss_conf 982999957888999999999986---998799806205554---320036445689899768998648788--------
Q ss_pred HHHHHHCCCCCCCCHHCCCCCEEEEECCCCCCCCCCHHH---HHHHHHHH--CCCEEEEEECCCCCCCHHHHHHHHHCCC
Q ss_conf 234321025787200000222001640674334780479---99999984--0460999953699899234574321017
Q 000739 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAA---ATEMALRL--YAKHRWCITGTPIQRKLDDLYGLLRFLK 652 (1322)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~iKN~~Sk---~~kal~~L--~a~~Rw~LTGTPIqN~l~DL~sLL~FL~ 652 (1322)
...+....|++||+||||+++|..+. .++++..+ ++.++|+|||||++|++.|+|+++.|+.
T Consensus 266 -------------~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~ 332 (968)
T 3dmq_A 266 -------------LEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLD 332 (968)
T ss_dssp -------------THHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHC
T ss_pred -------------HHHHHHCCCCEEEEHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCC
T ss_conf -------------8876415877897444676258887542999999998625785899976876698799999998259
Q ss_pred CCCCCCHHHHHHHHCCC---------CCCC----------------------------------CCCHHHHHHHHH----
Q ss_conf 99999846779987188---------8788----------------------------------600589999986----
Q 000739 653 SSPFSISRWWIEVIRDP---------YENG----------------------------------DVGAMEFTHKFF---- 685 (1322)
Q Consensus 653 p~~l~~~~~f~~~~~~p---------~~~g----------------------------------~~~~~~~L~~lL---- 685 (1322)
|+.|++...|...+... +..+ .......+..++
T Consensus 333 p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g 412 (968)
T 3dmq_A 333 PNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHG 412 (968)
T ss_dssp TTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 30118989999999857889999998742678998899999988420336788750362223337999999999998617
Q ss_pred -HHHHEECCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf -4440231433223568999971899993299999999999999988799999999998775205999888887657200
Q 000739 686 -KEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPII 764 (1322)
Q Consensus 686 -~~imLRRtK~dV~~el~LPpk~e~vv~v~lS~~Er~~Y~~~~e~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~l 764 (1322)
..+++|+++..+. .+|++....+.+++++.++..|+..... .+ .....
T Consensus 413 ~~~~l~r~~r~~i~---~~p~r~~~~~~l~~~~~~~~~~~~~~~~-----------------~~--------~~~~~--- 461 (968)
T 3dmq_A 413 TSRVLFRNTRNGVK---GFPKRELHTIKLPLPTQYQTAIKVSGIM-----------------GA--------RKSAE--- 461 (968)
T ss_dssp TTTTEECCCTTTCC---CCCCCCCCEEEECCCHHHHHHHHHHHHT-----------------TC--------CSSGG---
T ss_pred CCHHHHHHHHHHHC---CCCHHHEEEEECCCCHHHHHHHHHHHHH-----------------HH--------HHHHH---
T ss_conf 33265632265545---5671115752368999999999987543-----------------02--------12667---
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 246599999999999998068868886633346---99999999999999998985344024056656358679999996
Q 000739 765 THAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQ---QSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKN 841 (1322)
Q Consensus 765 ~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~~~---~~~~tmeelL~~Li~~~~~e~~ea~rkvlifsq~la~L~iie~~ 841 (1322)
.....|.+|......+.... .......+.+..++.. ....++++|++.....+.+...
T Consensus 462 -------------~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~------~~~~k~iVF~~~~~~~~~l~~~ 522 (968)
T 3dmq_A 462 -------------DRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS------HRSQKVLVICAKAATALQLEQV 522 (968)
T ss_dssp -------------GGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH------TSSSCCCEECSSTHHHHHHHHH
T ss_pred -------------HHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH------CCCCCEEEEECCHHHHHHHHHH
T ss_conf -------------777641085989987643331356856799999999983------7999789996959999999999
Q ss_pred HHHH----HHHHHHHH--HHHHHHHHHCCCCC--C-----------------CCEEEEECCCCCCHHHHHHHHH-HHCCC
Q ss_conf 7687----87999999--99999961006898--7-----------------6603675278778001542445-21037
Q 000739 842 LSQA----VSLYKEAM--AVVEEHSEDFRLDP--L-----------------LNIHLHHNLTEILPMVANCATE-LSQNE 895 (1322)
Q Consensus 842 l~~a----~~~y~~~l--~~~~e~~~~f~~D~--~-----------------~~lh~~~nl~~wnpa~e~QA~d-~hRIG 895 (1322)
+... +..+.+.+ ..++...+.|+.+. . ...++.+++. |||+...|+.+ ++|+|
T Consensus 523 L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p-~~~~~~~Q~~GR~~R~G 601 (968)
T 3dmq_A 523 LREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLP-FNPDLLEQRIGRLDRIG 601 (968)
T ss_dssp HHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCC-SSHHHHHHHHHTTSCSS
T ss_pred HHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCEEEEECCC-CCHHHHHHHHHCCCCCC
T ss_conf 99874983899849999999999999974799763089853343168885567679995699-98789998701143079
Q ss_pred CCCCEEEEECCCCCCCCCCCHHHHHHHC
Q ss_conf 8886389981117962102045753200
Q 000739 896 QHFPGCSEKAFKIHSIETCDENARKCQR 923 (1322)
Q Consensus 896 Q~~~V~vyrlit~~TiEE~~~~~~kr~~ 923 (1322)
|++.|.+|++++.+|+||.+....++|.
T Consensus 602 q~~~v~v~~~~~~~t~ee~i~~~~~~k~ 629 (968)
T 3dmq_A 602 QAHDIQIHVPYLEKTAQSVLVRWYHEGL 629 (968)
T ss_dssp SCSCCEEEEEEETTSHHHHHHHHHHHTT
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHCC
T ss_conf 9850899980577719999999998678
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=250.11 Aligned_cols=368 Identities=11% Similarity=0.033 Sum_probs=206.0
Q ss_pred CCEEEEECC-CHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCHHHHCCCCCEEEEEHHHHHHHCCCCCCCCCCC
Q ss_conf 938999188-1168899999843899997299971887665544221000000386799983587852104677777650
Q 000739 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1322)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DIVITTYetL~~d~~~~~~~~~~~ 577 (1322)
+++|||||. +++.||.+|+.+++..+..++.+++|...... .......++|+|+||+++...+..
T Consensus 53 ~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~------~~~~~~~~~ivv~T~~~l~~~~~~-------- 118 (494)
T 1wp9_A 53 GKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEE------RSKAWARAKVIVATPQTIENDLLA-------- 118 (494)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHH------HHHHHHHCSEEEECHHHHHHHHHT--------
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHCCCHHHEEEEECCCCHHH------HHHHCCCCCEEEECHHHHHHHHHC--------
T ss_conf 859999788899999999999874756111687607753355------665335798999639999999860--------
Q ss_pred HHHHHHCCCCCCCCHHCCCCCEEEEECCCCCCCCCCHHHHH--HHHH-HHCCCEEEEEECCCCCCCHHHHHHHHHCCCCC
Q ss_conf 23432102578720000022200164067433478047999--9999-84046099995369989923457432101799
Q 000739 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAAT--EMAL-RLYAKHRWCITGTPIQRKLDDLYGLLRFLKSS 654 (1322)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~iKN~~Sk~~--kal~-~L~a~~Rw~LTGTPIqN~l~DL~sLL~FL~p~ 654 (1322)
..+....|++||+||||.+++..+... ..+. ..+..++|+|||||. |+..+++.++.++...
T Consensus 119 --------------~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~-~~~~~~~~l~~~l~~~ 183 (494)
T 1wp9_A 119 --------------GRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPG-STPEKIMEVINNLGIE 183 (494)
T ss_dssp --------------TSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCSC-SSHHHHHHHHHHTTCC
T ss_pred --------------CCCCHHHCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCC-CCCHHHHHHHHHCCHH
T ss_conf --------------8715654108999787566888819999999973288776999956998-8857899999850700
Q ss_pred CCCCH---HHHHHHHCCCCC-----CCCCCHHHHHHHHHHHHHEECCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHH
Q ss_conf 99984---677998718887-----8860058999998644402314332235689999718999932999999999999
Q 000739 655 PFSIS---RWWIEVIRDPYE-----NGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQ 726 (1322)
Q Consensus 655 ~l~~~---~~f~~~~~~p~~-----~g~~~~~~~L~~lL~~imLRRtK~dV~~el~LPpk~e~vv~v~lS~~Er~~Y~~~ 726 (1322)
..... ..+...+..+.. ...+.....+...+.+++.++.+......+ +++.. ..++..+.......
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~ 257 (494)
T 1wp9_A 184 HIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGL-LESSS-----PDIPKKEVLRAGQI 257 (494)
T ss_dssp EEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTS-SSCCC-----TTSCHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCC-----CCCCHHHHHHHHHH
T ss_conf 0502678758788752787426895688588999999898999999999997355-65457-----77335578999999
Q ss_pred HHHHHH--------HHH--HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC---
Q ss_conf 999887--------999--9999999877520599988888765720024659999999999999806886888663---
Q 000739 727 HETCVG--------YAR--EVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGL--- 793 (1322)
Q Consensus 727 ~e~~~~--------~~~--~~~~~~~~~~~~r~~~g~~~~~~~~~~~l~~~~~~~iL~~L~rLRQiC~HP~L~~~~~--- 793 (1322)
...... ... .....+..... .........+...+..|...|.|+.......
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 321 (494)
T 1wp9_A 258 INEEMAKGNHDLRGLLLYHAMALKLHHAIE----------------LLETQGLSALRAYIKKLYEEAKAGSTKASKEIFS 321 (494)
T ss_dssp HHHHHTTTCCSTTTHHHHHHHHHHHHHHHH----------------HHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHT
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHH----------------HHHHHCHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 998753356311347999988888999999----------------9985257999999999987522321145566665
Q ss_pred ----CC---------CCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHH------
Q ss_conf ----33---------46999999999999999989853440240566563586799999967687---879999------
Q 000739 794 ----RS---------LQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQA---VSLYKE------ 851 (1322)
Q Consensus 794 ----~~---------~~~~~~tmeelL~~Li~~~~~e~~ea~rkvlifsq~la~L~iie~~l~~a---~~~y~~------ 851 (1322)
.. ........-+.+..++.+.... ....++++|+++...++.+.+.+... ...+.+
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~--~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~ 399 (494)
T 1wp9_A 322 DKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQR--KQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKEN 399 (494)
T ss_dssp SHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH--CTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC--
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC--CCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCCCCC
T ss_conf 0788989999998874589986999999999998436--89975999976689999999999975998079965665444
Q ss_pred --HH--HHHHHHHHHCCCCCCC-----------------CEEEEECCCCCCHHHHHHHHH-HHCCCCCCCEEEEECCCCC
Q ss_conf --99--9999996100689876-----------------603675278778001542445-2103788863899811179
Q 000739 852 --AM--AVVEEHSEDFRLDPLL-----------------NIHLHHNLTEILPMVANCATE-LSQNEQHFPGCSEKAFKIH 909 (1322)
Q Consensus 852 --~l--~~~~e~~~~f~~D~~~-----------------~lh~~~nl~~wnpa~e~QA~d-~hRIGQ~~~V~vyrlit~~ 909 (1322)
.+ ..+++..+.|+.+... ..++.++.. |||+...|+.+ ++|+|| +.+|+|++.+
T Consensus 400 ~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~-~~~~~~~Qr~GR~~R~g~---g~~~~l~~~~ 475 (494)
T 1wp9_A 400 DRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPV-PSAIRSIQRRGRTGRHMP---GRVIILMAKG 475 (494)
T ss_dssp -----CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCC-HHHHHHHHHHTTSCSCCC---SEEEEEEETT
T ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHCCEEEEECCC-CCHHHHHHHHHHCCCCCC---CEEEEEEECC
T ss_conf 445899999999999866994699988841258871437989992898-878999998752257788---4699999569
Q ss_pred CCCCCCHHHHHHHC
Q ss_conf 62102045753200
Q 000739 910 SIETCDENARKCQR 923 (1322)
Q Consensus 910 TiEE~~~~~~kr~~ 923 (1322)
|+||.++..+.+|.
T Consensus 476 t~ee~~~~~~~~k~ 489 (494)
T 1wp9_A 476 TRDEAYYWSSRQKE 489 (494)
T ss_dssp SHHHHHHHHCC---
T ss_pred CHHHHHHHHHHHHH
T ss_conf 87899999888789
No 6
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=1.00 E-value=1 Score=232.27 Aligned_cols=309 Identities=13% Similarity=0.087 Sum_probs=193.2
Q ss_pred CCEEEEECC-CHHHHHHHHHHHCCCCCCCE-EEEECCCCCCCCCCCCCCHHHHCCCCCEEEEEHHHHHHHCCCCCCCCCC
Q ss_conf 938999188-11688999998438999972-9997188766554422100000038679998358785210467777765
Q 000739 499 GATLIVCPA-PILAQWDAEITRHTRPGSLK-TCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1322)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~l~-V~vy~G~~~~~~~~~~~~~~~~l~~~DIVITTYetL~~d~~~~~~~~~~ 576 (1322)
+++|||||. +|+.||.+++.+| .++ +.+++|.... ..+|+|+||+.+.....
T Consensus 134 ~~~Lvl~P~~~L~~Q~~~~~~~~----~~~~v~~~~g~~~~--------------~~~Ivv~T~~~l~~~~~-------- 187 (472)
T 2fwr_A 134 TPTLIVVPTLALAEQWKERLGIF----GEEYVGEFSGRIKE--------------LKPLTVSTYDSAYVNAE-------- 187 (472)
T ss_dssp SCEEEEESSHHHHHHHHHHGGGG----CGGGEEEBSSSCBC--------------CCSEEEEEHHHHHHTHH--------
T ss_pred CCEEEEECCHHHHHHHHHHHHHC----CCCCEEEECCCCCC--------------CCCEEEEECHHHHHHHH--------
T ss_conf 99999987999999999999967----99636998787677--------------67789997689997799--------
Q ss_pred CHHHHHHCCCCCCCCHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 02343210257872000002220016406743347804799999998404609999536998992345743210179999
Q 000739 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 656 (1322)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~iKN~~Sk~~kal~~L~a~~Rw~LTGTPIqN~l~DL~sLL~FL~p~~l 656 (1322)
...-.|..||+||+|.+.++... ..+..+.+.++++|||||..++-.+
T Consensus 188 -----------------~~~~~~~liIvDEaH~~~~~~~~--~~~~~~~~~~~l~lSATp~~~~~~~------------- 235 (472)
T 2fwr_A 188 -----------------KLGNRFMLLIFDEVHHLPAESYV--QIAQMSIAPFRLGLTATFEREDGRH------------- 235 (472)
T ss_dssp -----------------HHTTTCSEEEEETGGGTTSTTTH--HHHHTCCCSEEEEEESCCCCTTSGG-------------
T ss_pred -----------------HHCCCCCEEEEECCCCCCCHHHH--HHHHHCCCCEEEEEECCCCCCCCHH-------------
T ss_conf -----------------73687778999897578976899--9997357781899932766889778-------------
Q ss_pred CCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHEECCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98467799871888788600589999986444023143322356899997189999329999999999999998879999
Q 000739 657 SISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYARE 736 (1322)
Q Consensus 657 ~~~~~f~~~~~~p~~~g~~~~~~~L~~lL~~imLRRtK~dV~~el~LPpk~e~vv~v~lS~~Er~~Y~~~~e~~~~~~~~ 736 (1322)
..+..++.+++.+....++... -+++.....+.+.+++.++..|..+......
T Consensus 236 ----------------------~~l~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 288 (472)
T 2fwr_A 236 ----------------------EILKEVVGGKVFELFPDSLAGK-HLAKYTIKRIFVPLAEDERVEYEKREKVYKQ---- 288 (472)
T ss_dssp ----------------------GSHHHHTCCEEEECCHHHHTSC-CCCSEEECCEEECCCHHHHHHTTTTTHHHHS----
T ss_pred ----------------------HHHHHHHCCEEEECCHHHHHCC-CCCCEEEEEEECCCCHHHHHHHHHHHHHHHH----
T ss_conf ----------------------9999972985765478987067-6788189999858998999999999999999----
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCC----HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99999987752059998888876572002----46599999999999998068868886633346999999999999999
Q 000739 737 VIQRLKDNILKRNVPGHASSDALYNPIIT----HAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIG 812 (1322)
Q Consensus 737 ~~~~~~~~~~~r~~~g~~~~~~~~~~~l~----~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~~~~~~~tmeelL~~Li~ 812 (1322)
.....-.......+. ...+. .......+......++++++.. ..-+.+..++.
T Consensus 289 --------~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~k~~~l~~~l~ 345 (472)
T 2fwr_A 289 --------FLRARGITLRRAEDF-NKIVMASGYDERAYEALRAWEEARRIAFNSK--------------NKIRKLREILE 345 (472)
T ss_dssp --------CSSSCCCTTTCCSSS-TTTTTTTCCSSSSSTTTHHHHHHHHHHHSCS--------------HHHHHHHHHHH
T ss_pred --------HHHHCCCCCCCHHHH-HHHHHHHCCCHHHHHHHHHHHHHHHHHHCCH--------------HHHHHHHHHHH
T ss_conf --------998647542244668-9999872369889999999999999763373--------------89999999998
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-----------------CCEEEEE
Q ss_conf 98985344024056656358679999996768787999999999999610068987-----------------6603675
Q 000739 813 KTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLDPL-----------------LNIHLHH 875 (1322)
Q Consensus 813 ~~~~e~~ea~rkvlifsq~la~L~iie~~l~~a~~~y~~~l~~~~e~~~~f~~D~~-----------------~~lh~~~ 875 (1322)
+ ...+++++|++....++.+.+.+.............+++..+.|+.... ...++.+
T Consensus 346 ~------~~~~k~lvF~~~~~~~~~l~~~l~~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~ 419 (472)
T 2fwr_A 346 R------HRKDKIIIFTRHNELVYRISKVFLIPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIM 419 (472)
T ss_dssp H------TSSSCBCCBCSCHHHHHHHHHHTTCCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEE
T ss_pred H------CCCCCEEEEECCHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHCCCCCEEEECCCHHCCCCCCCCCEEEEE
T ss_conf 5------7898389997979999999997486556289999999999999867998889985705148462028689998
Q ss_pred CCCCCCHHHHHHHHH-HHCCCCC-CCEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 278778001542445-2103788-8638998111796210204575320
Q 000739 876 NLTEILPMVANCATE-LSQNEQH-FPGCSEKAFKIHSIETCDENARKCQ 922 (1322)
Q Consensus 876 nl~~wnpa~e~QA~d-~hRIGQ~-~~V~vyrlit~~TiEE~~~~~~kr~ 922 (1322)
+.. |+|+...|+.+ ++|+||. +.|.+|.+++++|+||.+....+.|
T Consensus 420 ~~~-~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~~~~~r~~~ 467 (472)
T 2fwr_A 420 SGS-GSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVNTARRRKNA 467 (472)
T ss_dssp CCS-SCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC-----------
T ss_pred CCC-CCHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHH
T ss_conf 999-988899998763157779985399999981998537999999876
No 7
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=1.00 E-value=1 Score=208.32 Aligned_cols=204 Identities=17% Similarity=0.165 Sum_probs=147.4
Q ss_pred HHHEECCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCH
Q ss_conf 44023143322356899997189999329999999999999998879999999999877520599988888765720024
Q 000739 687 EIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITH 766 (1322)
Q Consensus 687 ~imLRRtK~dV~~el~LPpk~e~vv~v~lS~~Er~~Y~~~~e~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~~~~~l~~ 766 (1322)
.--+||+|++|..+ |||+.+.+++|+||+.|+.+|+.+.+.....+. .. . ..
T Consensus 11 ~~~~rr~k~~v~~~--LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~-----------~~--------~-------~~ 62 (271)
T 1z5z_A 11 SSGLVPRGSHMASD--LPDKIETNVYCNLTPEQAAMYKAEVENLFNNID-----------SV--------T-------GI 62 (271)
T ss_dssp -------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTT-----------TC--------C-------HH
T ss_pred CCCCCCCHHHHHHH--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHH-----------HC--------C-------CC
T ss_conf 55641648778751--999779999818999999999999999999997-----------40--------3-------52
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH-
Q ss_conf 6599999999999998068868886633346999999999999999989853440240566563586799999967687-
Q 000739 767 AEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQA- 845 (1322)
Q Consensus 767 ~~~~~iL~~L~rLRQiC~HP~L~~~~~~~~~~~~~tmeelL~~Li~~~~~e~~ea~rkvlifsq~la~L~iie~~l~~a- 845 (1322)
.....++..+++|||+|+||.++..+.. . ......-+.|..++.+....+ ++++||+|+..++++|+..+...
T Consensus 63 ~~~~~~l~~l~~Lrq~~~hP~l~~~~~~-~-~~~s~K~~~L~~ll~~~~~~~----~kvlIFs~~~~~~~~l~~~L~~~~ 136 (271)
T 1z5z_A 63 KRKGMILSTLLKLKQIVDHPALLKGGEQ-S-VRRSGKMIRTMEIIEEALDEG----DKIAIFTQFVDMGKIIRNIIEKEL 136 (271)
T ss_dssp HHHHHHHHHHHHHHHHTTCTHHHHCSCC-C-STTCHHHHHHHHHHHHHHHTT----CCEEEEESCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCHHHHCCCCC-C-CCCCHHHHHHHHHHHHHHHCC----CEEEEEECCHHHHHHHHHHHHHHC
T ss_conf 1288999999999998489988468732-2-346899999999999998679----969999551999999999998733
Q ss_pred ---HHHHHHH--HHHHHHHHHHCCCCCCCC-------------------EEEEECCCCCCHHHHHHHHH-HHCCCCCCCE
Q ss_conf ---8799999--999999961006898766-------------------03675278778001542445-2103788863
Q 000739 846 ---VSLYKEA--MAVVEEHSEDFRLDPLLN-------------------IHLHHNLTEILPMVANCATE-LSQNEQHFPG 900 (1322)
Q Consensus 846 ---~~~y~~~--l~~~~e~~~~f~~D~~~~-------------------lh~~~nl~~wnpa~e~QA~d-~hRIGQ~~~V 900 (1322)
...+.+. ...+++.++.|+.++... .+++++++ |||+.+.||++ +|||||+++|
T Consensus 137 g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~-wnp~~~~Q~~gR~~R~Gq~~~v 215 (271)
T 1z5z_A 137 NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRW-WNPAVEDQATDRVYRIGQTRNV 215 (271)
T ss_dssp CSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSCC-SCTTTC--------------CC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEHHHHCCCCCCCCCCEEEEECCC-CCHHHHHHHHHHCCCCCCCCCE
T ss_conf 984799979999999999999832899997899722351588676448999997999-9851899999852323899856
Q ss_pred EEEECCCCCCCCCCCHHHHHHHCCC
Q ss_conf 8998111796210204575320024
Q 000739 901 CSEKAFKIHSIETCDENARKCQRVS 925 (1322)
Q Consensus 901 ~vyrlit~~TiEE~~~~~~kr~~~~ 925 (1322)
.||+|++.+||||+|++++.+|.-.
T Consensus 216 ~v~~li~~~TiEe~i~~~~~~K~~l 240 (271)
T 1z5z_A 216 IVHKLISVGTLEEKIDQLLAFKRSL 240 (271)
T ss_dssp EEEEEEETTSHHHHHHHHHHHCHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 9999854988999999999999999
No 8
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=204.23 Aligned_cols=359 Identities=10% Similarity=0.020 Sum_probs=182.6
Q ss_pred CCCEEEEECCC-HHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCHHHHCCCCCEEEEEHHHHHHHCCCCCCCCCC
Q ss_conf 99389991881-16889999984389999729997188766554422100000038679998358785210467777765
Q 000739 498 TGATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1322)
Q Consensus 498 ~~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DIVITTYetL~~d~~~~~~~~~~ 576 (1322)
.+++|||||.. |+.||..++.++++..++++.+++|....... .......++|+|+||+.+...+...
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~-----~~~~~~~~~IvI~Tp~~L~~~l~~~------ 364 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVS-----VEKVIEDSDIIVVTPQILVNSFEDG------ 364 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----C-----CHHHHHHCSEEEECHHHHHHHHHSS------
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHH-----HHHHCCCCCEEEECHHHHHHHHHCC------
T ss_conf 98599996989999999999999712169559999799631257-----8974169999994499999998717------
Q ss_pred CHHHHHHCCCCCCCCHHC-CCCCEEEEECCCCCCCCCCHHHHHHHHHHHC--------CCEEEEEECCCCCCCHHHHHHH
Q ss_conf 023432102578720000-0222001640674334780479999999840--------4609999536998992345743
Q 000739 577 DRRFMRFQKRYPVIPTLL-TRIFWWRICLDEAQMVESNAAAATEMALRLY--------AKHRWCITGTPIQRKLDDLYGL 647 (1322)
Q Consensus 577 ~~~~~r~~kry~~~~s~L-~~i~w~rVILDEAH~iKN~~Sk~~kal~~L~--------a~~Rw~LTGTPIqN~l~DL~sL 647 (1322)
.+ ..-.|..||+||||++.+..+....+...+. ..++++|||||.+++..++...
T Consensus 365 ----------------~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~ 428 (936)
T 4a2w_A 365 ----------------TLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEET 428 (936)
T ss_dssp ----------------SCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHH
T ss_pred ----------------CCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHH
T ss_conf ----------------6453367879999873135998669999999999863137886739986388554540208999
Q ss_pred HH-------CCCCC----CCCCHHHHHHHHCCCCCCC------CC-C-------HHHHHHHHHHHHHEECCCCCCC--CC
Q ss_conf 21-------01799----9998467799871888788------60-0-------5899999864440231433223--56
Q 000739 648 LR-------FLKSS----PFSISRWWIEVIRDPYENG------DV-G-------AMEFTHKFFKEIMCRSSKVHVS--DE 700 (1322)
Q Consensus 648 L~-------FL~p~----~l~~~~~f~~~~~~p~~~g------~~-~-------~~~~L~~lL~~imLRRtK~dV~--~e 700 (1322)
+. .+... .......+...+..|.... .. . .+..+..++..++- ...+. ..
T Consensus 429 ~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~---~~~l~~~~~ 505 (936)
T 4a2w_A 429 IEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIAY---VDTLSQNSK 505 (936)
T ss_dssp HHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHCCCCEEECCCCCHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHCCC
T ss_conf 99999999854971553465448999875367762377336556757999999999999999998876---655532022
Q ss_pred CCCCCCEE-----------EEEEECCCHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHCCCC
Q ss_conf 89999718-----------99993299999999999999988799999------------------99999877520599
Q 000739 701 LQLPPQEE-----------CVSWLTFSPIEEHFYQSQHETCVGYAREV------------------IQRLKDNILKRNVP 751 (1322)
Q Consensus 701 l~LPpk~e-----------~vv~v~lS~~Er~~Y~~~~e~~~~~~~~~------------------~~~~~~~~~~r~~~ 751 (1322)
..++++.. ....++....+..+|..+... ....+.+ +..+.......
T Consensus 506 ~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~-~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~--- 581 (936)
T 4a2w_A 506 KDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFIC-TEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNG--- 581 (936)
T ss_dssp -CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT---
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHC---
T ss_conf 3322577999999999988774055321035799999999-999999888875002042888999999999987632---
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 98888876572002465999999999999980688688866333469999999999999999898534402405665635
Q 000739 752 GHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNG 831 (1322)
Q Consensus 752 g~~~~~~~~~~~l~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~~~~~~~tmeelL~~Li~~~~~e~~ea~rkvlifsq~ 831 (1322)
+.. .....-...+...+..|...+..|...+. .-+.|..++.+... ....++++||+++
T Consensus 582 ------~~~--~~e~~l~~~~~~~~~~l~~~~~~~~~~~~-----------K~~~L~~lL~~~~~--~~~~~rvLIF~~t 640 (936)
T 4a2w_A 582 ------PYT--ELEQHLTAKFQEKEPELIALSKDETNENP-----------KLEELVCILDDAYR--YNPQTRTLLFAKT 640 (936)
T ss_dssp ------TCC--HHHHHHHHHHHHHHHHHHHHHTSTTCCCH-----------HHHHHHHHHHHTTT--SCTTCCEEEEESS
T ss_pred ------CCC--HHHHHHHHHHHHHHHHHHHHHHCCCCCCH-----------HHHHHHHHHHHHHC--CCCCCEEEEEECC
T ss_conf ------588--78999999899999999976405677897-----------99999999999853--5899749999697
Q ss_pred HHHHHHHHHHHHHH---------------HHHHHHHHH--HHHHHHHHCCC-CCC-----------------CCEEEEEC
Q ss_conf 86799999967687---------------879999999--99999610068-987-----------------66036752
Q 000739 832 LAGIALIEKNLSQA---------------VSLYKEAMA--VVEEHSEDFRL-DPL-----------------LNIHLHHN 876 (1322)
Q Consensus 832 la~L~iie~~l~~a---------------~~~y~~~l~--~~~e~~~~f~~-D~~-----------------~~lh~~~n 876 (1322)
..+++.|...+... ...+.+.+. .+.+.+++|+. +.. ...+++|+
T Consensus 641 ~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD 720 (936)
T 4a2w_A 641 RALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYE 720 (936)
T ss_dssp HHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEES
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCHHCCCCCHHCCEEEEEC
T ss_conf 99999999998637353666616996578765678889999999999863159815999807264277605589899938
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 787780015424452103788863899811179621020
Q 000739 877 LTEILPMVANCATELSQNEQHFPGCSEKAFKIHSIETCD 915 (1322)
Q Consensus 877 l~~wnpa~e~QA~d~hRIGQ~~~V~vyrlit~~TiEE~~ 915 (1322)
+. |||+...|+ +.| ||.+++.+|.|++.+|+||..
T Consensus 721 ~p-~s~~~~iQr--~GR-GR~~~g~vi~Li~~~t~ee~~ 755 (936)
T 4a2w_A 721 YS-GNVTKMIQV--RGR-GRAAGSKCILVTSKTEVVENE 755 (936)
T ss_dssp CC-SCSHHHHCC----------CCCEEEEESCHHHHHHH
T ss_pred CC-CCHHHHHHH--CCC-CCCCCCEEEEEEECCCHHHHH
T ss_conf 99-988999996--487-788887799998698899999
No 9
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=195.29 Aligned_cols=356 Identities=11% Similarity=0.029 Sum_probs=177.5
Q ss_pred CCCEEEEECCC-HHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCHHHHCCCCCEEEEEHHHHHHHCCCCCCCCCC
Q ss_conf 99389991881-16889999984389999729997188766554422100000038679998358785210467777765
Q 000739 498 TGATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1322)
Q Consensus 498 ~~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DIVITTYetL~~d~~~~~~~~~~ 576 (1322)
.+++|||||.. |+.||.+++.++++..++++..++|....... .......++|+|+||+.+...+...
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~-----~~~~~~~~~Ivv~Tp~~l~~~l~~~------ 364 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVS-----VEKVIEDSDIIVVTPQILVNSFEDG------ 364 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----C-----HHHHHHTCSEEEECHHHHHHHHHSS------
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHH-----HHHHHCCCCEEEECHHHHHHHHHHC------
T ss_conf 99699996989999999999998614379469999699623246-----9974079999997669999999826------
Q ss_pred CHHHHHHCCCCCCCCHHC-CCCCEEEEECCCCCCCCCCHHHHHHHHHHHC--------CCEEEEEECCCCCCCHHHHH--
Q ss_conf 023432102578720000-0222001640674334780479999999840--------46099995369989923457--
Q 000739 577 DRRFMRFQKRYPVIPTLL-TRIFWWRICLDEAQMVESNAAAATEMALRLY--------AKHRWCITGTPIQRKLDDLY-- 645 (1322)
Q Consensus 577 ~~~~~r~~kry~~~~s~L-~~i~w~rVILDEAH~iKN~~Sk~~kal~~L~--------a~~Rw~LTGTPIqN~l~DL~-- 645 (1322)
.+ ..-.|..||+||||++.+.......+...+. ..++++|||||.+++..++.
T Consensus 365 ----------------~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~ 428 (797)
T 4a2q_A 365 ----------------TLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEET 428 (797)
T ss_dssp ----------------SCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHH
T ss_pred ----------------CCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHH
T ss_conf ----------------5465133778999886355887649999999999763147887859997277554552248999
Q ss_pred --------HHHHCCCCC-CCCCHHHHHHHHCCCCCCC------CC--------CHHHHHHHHHHHHHEECCCCCCCCCCC
Q ss_conf --------432101799-9998467799871888788------60--------058999998644402314332235689
Q 000739 646 --------GLLRFLKSS-PFSISRWWIEVIRDPYENG------DV--------GAMEFTHKFFKEIMCRSSKVHVSDELQ 702 (1322)
Q Consensus 646 --------sLL~FL~p~-~l~~~~~f~~~~~~p~~~g------~~--------~~~~~L~~lL~~imLRRtK~dV~~el~ 702 (1322)
..+.+-... .......+..++..|.... .. ..+..+..++..++-.... ..
T Consensus 429 ~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l------~~ 502 (797)
T 4a2q_A 429 IEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTL------SQ 502 (797)
T ss_dssp HHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHCCCCEEECCCCCHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH------HH
T ss_conf 999999998549848854543178899735888548884577778678999999999999999998756776------53
Q ss_pred CCCCEE----------------EEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHC
Q ss_conf 999718----------------999932999999999999999887999999999------------------9877520
Q 000739 703 LPPQEE----------------CVSWLTFSPIEEHFYQSQHETCVGYAREVIQRL------------------KDNILKR 748 (1322)
Q Consensus 703 LPpk~e----------------~vv~v~lS~~Er~~Y~~~~e~~~~~~~~~~~~~------------------~~~~~~r 748 (1322)
+|.... ....+.....+...|..+.. +....+.....+ .......
T Consensus 503 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 581 (797)
T 4a2q_A 503 NSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFI-CTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNG 581 (797)
T ss_dssp ----CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 000011405677899999998777403432025679999999-9999999998876541325888999999999987504
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 59998888876572002465999999999999980688688866333469999999999999999898534402405665
Q 000739 749 NVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMA 828 (1322)
Q Consensus 749 ~~~g~~~~~~~~~~~l~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~~~~~~~tmeelL~~Li~~~~~e~~ea~rkvlif 828 (1322)
+... ....-.......+..+...+..|...+ ..+ +.|..++.+... ....++++||
T Consensus 582 ---------~~~~--~~~~l~~~~~~~~~~l~~~~~~~~~~~----------~K~-~~L~~lL~~~~~--~~~~~kvLIF 637 (797)
T 4a2q_A 582 ---------PYTE--LEQHLTAKFQEKEPELIALSKDETNEN----------PKL-EELVCILDDAYR--YNPQTRTLLF 637 (797)
T ss_dssp ---------TCCH--HHHHHHHHHHTTHHHHHHHHHCTTCCC----------HHH-HHHHHHHHHHHH--HCSSCCEEEE
T ss_pred ---------CCCH--HHHHHHHHHHHHHHHHHHHHCCCCCCC----------HHH-HHHHHHHHHHHC--CCCCCEEEEE
T ss_conf ---------7668--999999999999999987630788899----------599-999999999850--5899708999
Q ss_pred HHHHHHHHHHHHHHHHH---------------HHHHHHHH--HHHHHHHHHCCC-CCC-----------------CCEEE
Q ss_conf 63586799999967687---------------87999999--999999610068-987-----------------66036
Q 000739 829 LNGLAGIALIEKNLSQA---------------VSLYKEAM--AVVEEHSEDFRL-DPL-----------------LNIHL 873 (1322)
Q Consensus 829 sq~la~L~iie~~l~~a---------------~~~y~~~l--~~~~e~~~~f~~-D~~-----------------~~lh~ 873 (1322)
++...+++.+...+... ...+.+.+ ..+.+..+.|+. +.. ...++
T Consensus 638 ~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI 717 (797)
T 4a2q_A 638 AKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVV 717 (797)
T ss_dssp ESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEE
T ss_pred ECCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCHHCCCCCHHCCEEE
T ss_conf 79589999999999747564665521898447754578989999999999851369704999748054479751089899
Q ss_pred EECCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 752787780015424452103788863899811179621020
Q 000739 874 HHNLTEILPMVANCATELSQNEQHFPGCSEKAFKIHSIETCD 915 (1322)
Q Consensus 874 ~~nl~~wnpa~e~QA~d~hRIGQ~~~V~vyrlit~~TiEE~~ 915 (1322)
+|++. |||....|+ +.| ||.+++.+|.|++.++++|+.
T Consensus 718 ~yd~p-~s~~~~iQr--~GR-GR~~~g~~i~l~~~~~~ee~~ 755 (797)
T 4a2q_A 718 LYEYS-GNVTKMIQV--RGR-GRAAGSKCILVTSKTEVVENE 755 (797)
T ss_dssp EESCC-SCHHHHHTC----------CCCEEEEECCHHHHHHH
T ss_pred EECCC-CCHHHHHHH--CCC-CCCCCCEEEEEEECCCHHHHH
T ss_conf 94899-988999985--388-878786599997287688999
No 10
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=1.00 E-value=1 Score=183.82 Aligned_cols=365 Identities=13% Similarity=0.035 Sum_probs=176.0
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCHHHHCCCCCEEEEEHHHHHHHCCCCCCCCCC
Q ss_conf 9938999188-116889999984389999729997188766554422100000038679998358785210467777765
Q 000739 498 TGATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1322)
Q Consensus 498 ~~~tLIV~P~-SLl~QW~~Ei~k~~~~g~l~V~vy~G~~~~~~~~~~~~~~~~l~~~DIVITTYetL~~d~~~~~~~~~~ 576 (1322)
.+.+|||||. +|..||.+++.++++.-.+++..++|....... .......++|+|+|++.+...+...
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~i~v~T~~~l~~~~~~~------ 120 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVS-----VQHIIEDNDIIILTPQILVNNLNNG------ 120 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSC-----HHHHHHHCSEEEECHHHHHHHHHTS------
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHH-----HHHHHCCCCEEEECHHHHHHHHHCC------
T ss_conf 98799996888999999999998705389479997599740122-----8987369999997899999998607------
Q ss_pred CHHHHHHCCCCCCCCHHC-CCCCEEEEECCCCCCCCCCHHHHHHHHHHH---------CCCEEEEEECCCCCCCHHHHHH
Q ss_conf 023432102578720000-022200164067433478047999999984---------0460999953699899234574
Q 000739 577 DRRFMRFQKRYPVIPTLL-TRIFWWRICLDEAQMVESNAAAATEMALRL---------YAKHRWCITGTPIQRKLDDLYG 646 (1322)
Q Consensus 577 ~~~~~r~~kry~~~~s~L-~~i~w~rVILDEAH~iKN~~Sk~~kal~~L---------~a~~Rw~LTGTPIqN~l~DL~s 646 (1322)
.+ ..-.|..||+||||.+.+..+....+...+ ....++++||||.+++..++..
T Consensus 121 ----------------~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~ 184 (555)
T 3tbk_A 121 ----------------AIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASVGVGDAKTAEE 184 (555)
T ss_dssp ----------------SSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCCSCCCEEEEEESCCCCTTCCSHHH
T ss_pred ----------------CCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHH
T ss_conf ----------------6344010778999775456873349999999997541124688873999926766676522999
Q ss_pred -------HHHCCCCCCC----CCHHHHHHHHCCCCCCC------CCC--------HHHHHHHHHHHHHEECCCCCC-CCC
Q ss_conf -------3210179999----98467799871888788------600--------589999986444023143322-356
Q 000739 647 -------LLRFLKSSPF----SISRWWIEVIRDPYENG------DVG--------AMEFTHKFFKEIMCRSSKVHV-SDE 700 (1322)
Q Consensus 647 -------LL~FL~p~~l----~~~~~f~~~~~~p~~~g------~~~--------~~~~L~~lL~~imLRRtK~dV-~~e 700 (1322)
+..++....+ .....+...+..|.... ... .+..+..++..++-. .+.-. ...
T Consensus 185 ~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~ 263 (555)
T 3tbk_A 185 AMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQLMKETEKLAKDVSEE-LGKLFQIQN 263 (555)
T ss_dssp HHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHTSCHH-HHGGGGCCS
T ss_pred HHHHHHHHHHHCCCEEEECCCCCHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCC
T ss_conf 9999999998569806633235788898646998269998267666719999999999999999999876-544431223
Q ss_pred CCCCCCEE-----------EEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHCCCCCCCC
Q ss_conf 89999718-----------99993299999999999999988799999999998--------------775205999888
Q 000739 701 LQLPPQEE-----------CVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKD--------------NILKRNVPGHAS 755 (1322)
Q Consensus 701 l~LPpk~e-----------~vv~v~lS~~Er~~Y~~~~e~~~~~~~~~~~~~~~--------------~~~~r~~~g~~~ 755 (1322)
..+.++.. ..........+...|..+.. +....+.+...+.- .......
T Consensus 264 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 337 (555)
T 3tbk_A 264 REFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFL-YTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVR----- 337 (555)
T ss_dssp CCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHC-----
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_conf 334410246899999987666504660467789999999-99999999998752200227999999999999876-----
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 88765720024659999999999999806886888663334699999999999999998985344024056656358679
Q 000739 756 SDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGI 835 (1322)
Q Consensus 756 ~~~~~~~~l~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~~~~~~~tmeelL~~Li~~~~~e~~ea~rkvlifsq~la~L 835 (1322)
..+... ....-...+......+.+.+..+.- ....-+.|..++.+..... ...+++||+++..+.
T Consensus 338 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~k~~~l~~~l~~~~~~~--~~~k~lVF~~~~~~~ 402 (555)
T 3tbk_A 338 EAAFDE--TERELTRRFEEKLEELEKVSRDPSN-----------ENPKLRDLYLVLQEEYHLK--PETKTILFVKTRALV 402 (555)
T ss_dssp C-------HHHHHHHHHHTTHHHHHHHHHCGGG-----------CCHHHHHHHHHHHHHHHHC--TTCCEEEECSSHHHH
T ss_pred HCCCCH--HHHHHHHHHHHHHHHHHHHCCCCCC-----------CCHHHHHHHHHHHHHHCCC--CCCEEEEEECCHHHH
T ss_conf 336666--7899999986455666542047776-----------8989999999999971568--996699996768999
Q ss_pred HHHHHHHHHHH---------------HHHHHHH--HHHHHHHHHCCC-CCC-----------------CCEEEEECCCCC
Q ss_conf 99999676878---------------7999999--999999610068-987-----------------660367527877
Q 000739 836 ALIEKNLSQAV---------------SLYKEAM--AVVEEHSEDFRL-DPL-----------------LNIHLHHNLTEI 880 (1322)
Q Consensus 836 ~iie~~l~~a~---------------~~y~~~l--~~~~e~~~~f~~-D~~-----------------~~lh~~~nl~~w 880 (1322)
+.+...+.... ..+.+.+ ..+.+..+.|+. ... ...++.|++. |
T Consensus 403 ~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p-~ 481 (555)
T 3tbk_A 403 DALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYV-G 481 (555)
T ss_dssp HHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEESCC-S
T ss_pred HHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHCCCCCCCCCEEEEECCC-C
T ss_conf 999999962867673002489705875334566889999999997427971399981605327866037989991799-9
Q ss_pred CHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 80015424452103788863899811179621020
Q 000739 881 LPMVANCATELSQNEQHFPGCSEKAFKIHSIETCD 915 (1322)
Q Consensus 881 npa~e~QA~d~hRIGQ~~~V~vyrlit~~TiEE~~ 915 (1322)
||....|+ +-| ||.+.+.+|.|++.+++++..
T Consensus 482 s~~~~~Qr--~GR-gR~~~g~~~~l~~~~~~~~~~ 513 (555)
T 3tbk_A 482 NVIKMIQT--RGR-GRARDSKCFLLTSSADVIEKE 513 (555)
T ss_dssp SCCCEECS--SCC-CTTTSCEEEEEESCHHHHHHH
T ss_pred CHHHHHHH--CCC-CCCCCCEEEEEECCCCHHHHH
T ss_conf 77887775--276-767895599997587777899
Done!