Query 000740
Match_columns 1321
No_of_seqs 581 out of 2794
Neff 6.4
Searched_HMMs 29240
Date Tue Mar 26 16:56:10 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000740.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_511-515//hhsearch_pdb/000740hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z3i_X Similar to RAD54-like; 1.0 1 1 731.8 44.5 527 553-1152 43-580 (644)
2 3mwy_W Chromo domain-containin 1.0 1 1 695.9 39.8 491 559-1147 230-737 (800)
3 1z63_A Helicase of the SNF2/RA 1.0 1 1 624.7 36.8 469 554-1145 27-498 (500)
4 3dmq_A RNA polymerase-associat 1.0 1 1 465.1 26.6 445 562-1123 150-637 (968)
5 1wp9_A ATP-dependent RNA helic 1.0 1 1 375.3 27.5 447 563-1119 7-493 (494)
6 1z5z_A Helicase of the SNF2/RA 1.0 1 1 363.3 23.4 257 818-1146 13-270 (271)
7 2fwr_A DNA repair protein RAD2 1.0 1 1 341.1 23.9 377 563-1118 91-471 (472)
8 4a2q_A RIG-I, retinoic acid in 1.0 1 1 334.5 30.9 502 556-1125 237-772 (797)
9 4a2w_A RIG-I, retinoic acid in 1.0 1 1 333.6 28.8 493 556-1124 237-771 (936)
10 4a2p_A RIG-I, retinoic acid in 1.0 1 1 316.5 33.8 487 563-1124 5-530 (556)
No 1
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=731.77 Aligned_cols=527 Identities=32% Similarity=0.553 Sum_probs=432.3
Q ss_pred CCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCC---CCCCE
Q ss_conf 744236950022130889999999999999855420468998661998389976699999999999982114---89742
Q 000740 553 EEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNL---GLRTA 629 (1321)
Q Consensus 553 ~~~v~vp~~l~~~LkphQ~eGV~fL~e~~~~sl~r~k~~~~g~GgILADeMGLGKTlQaIali~~ll~~~~~---~~k~v 629 (1321)
...+.+|+.+...|+|||++||+|||+.+.+. ....+.||||||+||||||+|+|+++..++..... ..+++
T Consensus 43 ~~~~~~~p~l~~~LrpyQ~~gv~~l~~~~~~~-----~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~ 117 (644)
T 1z3i_X 43 PVHVVVDPVLSKVLRPHQREGVKFLWDCVTGR-----RIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKV 117 (644)
T ss_dssp CCCEECCHHHHTTCCHHHHHHHHHHHHHHTTS-----SSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCE
T ss_pred CCEEEECHHHHHCCCHHHHHHHHHHHHHHHCC-----CCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCE
T ss_conf 86175185640035199999999999842335-----4458887596107874299999999999997486656777857
Q ss_pred EEECCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHH------CCCEEEECCCCCCCCCCCCCCCCHH
Q ss_conf 7981645799999999987899998819999448525699999999850------6979998122000123463211134
Q 000740 630 LIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRA------KGGVFLIGYTAFRNLSFGKHVKDRN 703 (1321)
Q Consensus 630 LIVvP~sLi~nW~~Ei~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~------~~~ViIisY~~lr~ls~~~~~~d~~ 703 (1321)
|||||.+++.||.+||.+|+|.. +.++.+++.....+...+..|.. ..+|+|+||++++...
T Consensus 118 LiV~P~sll~qW~~E~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--------- 185 (644)
T 1z3i_X 118 IVVSPSSLVRNWYNEVGKWLGGR---VQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--------- 185 (644)
T ss_dssp EEEECHHHHHHHHHHHHHHHGGG---CCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT---------
T ss_pred EEEECHHHHHHHHHHHHHHCCCC---EEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHH---------
T ss_conf 99965899887999999975887---259998089889999999999873377778757996389987657---------
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHC
Q ss_conf 68998754127998999919842388501578998512355099983688988135678653210269999958898520
Q 000740 704 MAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRF 783 (1321)
Q Consensus 704 ~~~~i~~lL~~~~dlVIiDEAH~IKN~~S~~skal~~L~t~~RilLTGTPiqNnL~EL~sLl~FL~p~~Lgs~~eF~~~f 783 (1321)
..+....|++||+||||++||+.++.++++..+++.+||+|||||+||++.|||+|++|+.|++|++...|.++|
T Consensus 186 -----~~l~~~~~~~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f 260 (644)
T 1z3i_X 186 -----EVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRF 260 (644)
T ss_dssp -----TTTTTSCCCEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHT
T ss_pred -----HHHHCCCCCEEEEECCEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf -----875048865799878622478045999999855567379984673458899999999861887689999999863
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 58744677899874789998887999999975876531255563119996299999618999999999999750554532
Q 000740 784 QNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDR 863 (1321)
Q Consensus 784 ~~pI~~g~~~~st~~dv~~~~~r~~~L~~~L~~fv~Rr~~~~v~~~LP~K~e~vv~v~LS~~Q~~LY~~~l~~~~~~~~~ 863 (1321)
..||..+...+++..+...+..+...|+.++.+|++||++.++...||++.+++++|+|++.|+.+|+.++.........
T Consensus 261 ~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~ 340 (644)
T 1z3i_X 261 EIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESL 340 (644)
T ss_dssp HHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSS
T ss_pred CCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 26154167767788899999999999999988999871087676427983699998379989999999999989999987
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHH
Q ss_conf 11378874299999999999539201100001699997555578875335421103688765001002789986311234
Q 000740 864 VSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDW 943 (1321)
Q Consensus 864 ~~~~~~~~~~l~~l~~LrkicnHP~Ll~~~~~~~~~~~ed~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 943 (1321)
.........+..+..|+++|+||.++.............. . +.......
T Consensus 341 -~~g~~~~~~l~~l~~Lrk~c~hp~l~~~~~~~~~~~~~~~--------~--------------~~~~~~~~-------- 389 (644)
T 1z3i_X 341 -QTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGA--------L--------------DLFPQNYS-------- 389 (644)
T ss_dssp -CTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTTG--------G--------------GTSCSSCC--------
T ss_pred -HCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHH--------H--------------HHCCCCCC--------
T ss_conf -6276214599999999999579998888874154003557--------7--------------64542111--------
Q ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 4543210011224667049999999997311-999199990753269999999830999998763323797279437998
Q 000740 944 WNDLLHEHTYKELDYSGKMVLLLDILTMCSN-MGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRT 1022 (1321)
Q Consensus 944 ~~~ll~~~~~~~~~~SgKl~~L~elL~~~~~-~G~KVLIFSQ~~~tLdlLe~~L~~l~~~~~~~~~w~~Gi~y~rLDGst 1022 (1321)
........|+|+.+|..++..+.. .++|+||||+|+.++++|+.+|.. .|+.|.+++|++
T Consensus 390 -------~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~------------~g~~~~~l~G~~ 450 (644)
T 1z3i_X 390 -------TKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRN------------RRYLYVRLDGTM 450 (644)
T ss_dssp -------SSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHH------------HTCCEEEECSSC
T ss_pred -------CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH------------CCCCEEEEECCC
T ss_conf -------0005701174899999999998646998799998059999999999997------------799789983999
Q ss_pred CHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCC
Q ss_conf 99999999999818899982189952442333458456797999909999002333535121039988689999981899
Q 000740 1023 ESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGT 1102 (1321)
Q Consensus 1023 s~~eRq~lI~~Fn~~~n~~v~VlLISTkAGg~GLNLt~AnrVIi~D~~WNPs~d~QAigRv~RiGQkK~V~VYRLia~gT 1102 (1321)
+..+|+.++++|+++.+. ..+||+||++||+||||++|++||+||++|||+.+.||+||+||+||+++|+||+|++.||
T Consensus 451 ~~~~R~~~i~~F~~~~~~-~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~t 529 (644)
T 1z3i_X 451 SIKKRAKIVERFNNPSSP-EFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGT 529 (644)
T ss_dssp CHHHHHHHHHHHHSTTCC-CCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTS
T ss_pred CHHHHHHHHHHHCCCCCC-CEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCC
T ss_conf 999999999996399999-6799984455667846523898999799998137999988403228987269999887988
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCHHHHHHHHCCCCCCCCCHHH
Q ss_conf 69999999999999999870533-102457999998712589999998133
Q 000740 1103 MEEKIYKRQVTKEGLAARVVDRQ-QVHRTISKEEMLHLFEFGDDENPDPLT 1152 (1321)
Q Consensus 1103 IEEkI~~rq~~K~~La~~Vvd~~-~~~r~~s~~EL~eLf~~~~~e~~d~~~ 1152 (1321)
+||+|+++|..|+.+++.++++. ...+.|+.+||.+||++.++...++..
T Consensus 530 iEe~i~~~~~~K~~l~~~v~~~~~~~~~~~~~~~l~~Lf~~~~~~~~~t~~ 580 (644)
T 1z3i_X 530 IEEKILQRQAHKKALSSCVVDEEQDVERHFSLGELRELFSLNEKTLSDTHD 580 (644)
T ss_dssp HHHHHHHHHHHHHHTSCCCCSCSSSCCCSSCHHHHHHHTCCCSSCSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHCCCCCCCCHHHH
T ss_conf 999999999999999999856860543378999999986789876322566
No 2
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=695.85 Aligned_cols=491 Identities=30% Similarity=0.414 Sum_probs=396.4
Q ss_pred CCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHH
Q ss_conf 95002213088999999999999985542046899866199838997669999999999998211489742798164579
Q 000740 559 PSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVL 638 (1321)
Q Consensus 559 p~~l~~~LkphQ~eGV~fL~e~~~~sl~r~k~~~~g~GgILADeMGLGKTlQaIali~~ll~~~~~~~k~vLIVvP~sLi 638 (1321)
|......|+|||++||.||+... ..+.||||||+||||||+|+|+++..++.... ..+++|||||.+++
T Consensus 230 ~~~~~~~Lr~yQ~egv~~l~~~~----------~~~~~~ILademGlGKT~~ai~~i~~l~~~~~-~~~~~LIV~P~sll 298 (800)
T 3mwy_W 230 PFIKGGELRDFQLTGINWMAFLW----------SKGDNGILADEMGLGKTVQTVAFISWLIFARR-QNGPHIIVVPLSTM 298 (800)
T ss_dssp TTCCSSCCCTHHHHHHHHHHHHH----------TTTCCEEECCCTTSSTTHHHHHHHHHHHHHHS-CCSCEEEECCTTTH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHH----------HCCCCEEEEECCCCCHHHHHHHHHHHHHHHCC-CCCCEEEEECCHHH
T ss_conf 86579975899999999999985----------13899899827875329999999999998607-79988999880389
Q ss_pred HHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHH----------HHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 9999999987899998819999448525699999999----------850697999812200012346321113468998
Q 000740 639 HNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAK----------WRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREI 708 (1321)
Q Consensus 639 ~nW~~Ei~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~----------~~~~~~ViIisY~~lr~ls~~~~~~d~~~~~~i 708 (1321)
.||.+||.+|+|. +.+..+++............ .....+|+|+||+++... .
T Consensus 299 ~qW~~E~~~~~p~----~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~--------------~ 360 (800)
T 3mwy_W 299 PAWLDTFEKWAPD----LNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKD--------------R 360 (800)
T ss_dssp HHHHHHHHHHSTT----CCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHT--------------H
T ss_pred HHHHHHHHHHCCC----CEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECHHHHHHH--------------H
T ss_conf 9999999997799----649998277777889888776226300134456678899069999864--------------9
Q ss_pred HHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCC
Q ss_conf 75412799899991984238850157899851235509998368898813567865321026999995889852058744
Q 000740 709 CHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIE 788 (1321)
Q Consensus 709 ~~lL~~~~dlVIiDEAH~IKN~~S~~skal~~L~t~~RilLTGTPiqNnL~EL~sLl~FL~p~~Lgs~~eF~~~f~~pI~ 788 (1321)
..+....|++||+||||++||..++.++++..+++.+||+|||||+||++.|+|++++|+.|+.|+....|......
T Consensus 361 ~~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~--- 437 (800)
T 3mwy_W 361 AELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQD--- 437 (800)
T ss_dssp HHHHTSEEEEEEETTGGGGCCSSSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCT---
T ss_pred HHHHCCCCCEEEHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHCCCCCC---
T ss_conf 99833773256413444414710199999997522438972278577999999999998586636743442322231---
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 67789987478999888799999997587653125556311999629999961899999999999975055453211378
Q 000740 789 NGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEK 868 (1321)
Q Consensus 789 ~g~~~~st~~dv~~~~~r~~~L~~~L~~fv~Rr~~~~v~~~LP~K~e~vv~v~LS~~Q~~LY~~~l~~~~~~~~~~~~~~ 868 (1321)
. ........|+..+.+|++||++.++...||++.+.+++|+|++.|+.+|..++......... ....
T Consensus 438 --------~----~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~-~~~~ 504 (800)
T 3mwy_W 438 --------E----EQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTA-GAKG 504 (800)
T ss_dssp --------T----HHHHHHHHHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC---------
T ss_pred --------H----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHH-CCCC
T ss_conf --------4----68999999999975777532087664316882799997079999999999999999999861-0354
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 87429999999999953920110000169999755557887533542110368876500100278998631123445432
Q 000740 869 IRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLL 948 (1321)
Q Consensus 869 ~~~~~l~~l~~LrkicnHP~Ll~~~~~~~~~~~ed~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ll 948 (1321)
...+++..++.|+++|+||.++............ .........
T Consensus 505 ~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~--------------------------------~~~~~~~~~----- 547 (800)
T 3mwy_W 505 GHFSLLNIMNELKKASNHPYLFDNAEERVLQKFG--------------------------------DGKMTRENV----- 547 (800)
T ss_dssp --CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC------------------------------------CCSHHH-----
T ss_pred CHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHCC--------------------------------CCCCCHHHH-----
T ss_conf 5446999999999873586542355789988615--------------------------------665557788-----
Q ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCHHHHH
Q ss_conf 10011224667049999999997311999199990753269999999830999998763323797279437998999999
Q 000740 949 HEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQ 1028 (1321)
Q Consensus 949 ~~~~~~~~~~SgKl~~L~elL~~~~~~G~KVLIFSQ~~~tLdlLe~~L~~l~~~~~~~~~w~~Gi~y~rLDGsts~~eRq 1028 (1321)
....+..|+|+.+|.++|..+...|+|+|||||++.++++|+.+|.. .|+.|.+++|+++..+|+
T Consensus 548 ---~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~------------~g~~~~~i~G~~~~~eR~ 612 (800)
T 3mwy_W 548 ---LRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSI------------KGINFQRLDGTVPSAQRR 612 (800)
T ss_dssp ---HHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHH------------HTCCCEEESTTSCHHHHH
T ss_pred ---HHHHHHCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHH------------CCCCEEEEECCCCHHHHH
T ss_conf ---88766427699999999999752798189996359999999999986------------799789996999999999
Q ss_pred HHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHH
Q ss_conf 99999818899982189952442333458456797999909999002333535121039988689999981899699999
Q 000740 1029 KLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIY 1108 (1321)
Q Consensus 1029 ~lI~~Fn~~~n~~v~VlLISTkAGg~GLNLt~AnrVIi~D~~WNPs~d~QAigRv~RiGQkK~V~VYRLia~gTIEEkI~ 1108 (1321)
.++++||++.. ..++||+||+|||+||||++|++||+||++|||+.+.||+||+||+||+++|+||||++.||+|++|+
T Consensus 613 ~~i~~F~~~~~-~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~ 691 (800)
T 3mwy_W 613 ISIDHFNSPDS-NDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVL 691 (800)
T ss_dssp HHHHTTSSTTC-SCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHH
T ss_pred HHHHHHHCCCC-CCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHH
T ss_conf 99999608999-82599974544567877601636899468788116899999988558986379999861998999999
Q ss_pred HHHHHHHHHHHHHHCCCCC-------CCCCCHHHHHHHHCCCCCCC
Q ss_conf 9999999999987053310-------24579999987125899999
Q 000740 1109 KRQVTKEGLAARVVDRQQV-------HRTISKEEMLHLFEFGDDEN 1147 (1321)
Q Consensus 1109 ~rq~~K~~La~~Vvd~~~~-------~r~~s~~EL~eLf~~~~~e~ 1147 (1321)
+++..|+.++..+++.... ...++.+||.+++.++..+.
T Consensus 692 ~~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~~el~~ll~~g~~~~ 737 (800)
T 3mwy_W 692 ERARKKMILEYAIISLGVTDGNKYTKKNEPNAGELSAILKFGAGNM 737 (800)
T ss_dssp HHHHHHTTSCC----------------CCCCHHHHHHHHSSCSSSS
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHH
T ss_conf 9999988899999703756653211234789999999997165765
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=1.00 E-value=1 Score=624.67 Aligned_cols=469 Identities=30% Similarity=0.461 Sum_probs=399.1
Q ss_pred CCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEC
Q ss_conf 44236950022130889999999999999855420468998661998389976699999999999982114897427981
Q 000740 554 EAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVT 633 (1321)
Q Consensus 554 ~~v~vp~~l~~~LkphQ~eGV~fL~e~~~~sl~r~k~~~~g~GgILADeMGLGKTlQaIali~~ll~~~~~~~k~vLIVv 633 (1321)
+++. |..+...|+|||.+|+.||+... ..+.|+||||+||+|||+|+++++..+..... .+++||||
T Consensus 27 ~~~~-p~~~~~~L~~~Q~~~v~~l~~~~----------~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~--~~~~LIv~ 93 (500)
T 1z63_A 27 QLLE-PYNIKANLRPYQIKGFSWMRFMN----------KLGFGICLADDMGLGKTLQTIAVFSDAKKENE--LTPSLVIC 93 (500)
T ss_dssp CCCC-CCSCSSCCCHHHHHHHHHHHHHH----------HTTCCEEECCCTTSCHHHHHHHHHHHHHHTTC--CSSEEEEE
T ss_pred CCCC-CHHHHCCCHHHHHHHHHHHHHHH----------HCCCCEEEEECCCCCHHHHHHHHHHHHHHCCC--CCCEEEEC
T ss_conf 6679-83320033699999999999974----------17998899808997389999999998875589--99789990
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 64579999999998789999881999944852569999999985069799981220001234632111346899875412
Q 000740 634 PVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQ 713 (1321)
Q Consensus 634 P~sLi~nW~~Ei~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~ViIisY~~lr~ls~~~~~~d~~~~~~i~~lL~ 713 (1321)
|.+++.||.+||.+|+|. +++..+++.... ......+|+|+||+++.... .+..
T Consensus 94 P~~l~~qw~~e~~~~~~~----~~v~~~~g~~~~-------~~~~~~~ivi~t~~~l~~~~---------------~l~~ 147 (500)
T 1z63_A 94 PLSVLKNWEEELSKFAPH----LRFAVFHEDRSK-------IKLEDYDIILTTYAVLLRDT---------------RLKE 147 (500)
T ss_dssp CSTTHHHHHHHHHHHCTT----SCEEECSSSTTS-------CCGGGSSEEEEEHHHHTTCH---------------HHHT
T ss_pred CHHHHHHHHHHHHHHCCC----CEEEEEECCCHH-------CCCCCCCEEEEEHHHHHCCC---------------HHCC
T ss_conf 389999999999997799----559997267021-------00357768996379972630---------------2117
Q ss_pred CCCCEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCC
Q ss_conf 79989999198423885015789985123550999836889881356786532102699999588985205874467789
Q 000740 714 DGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHT 793 (1321)
Q Consensus 714 ~~~dlVIiDEAH~IKN~~S~~skal~~L~t~~RilLTGTPiqNnL~EL~sLl~FL~p~~Lgs~~eF~~~f~~pI~~g~~~ 793 (1321)
..|++||+||||+++|..+++++++..+.+++||+|||||++|++.|+|++++|+.|+++++...|...|..|+..+..
T Consensus 148 ~~~~~vIvDEaH~~kn~~~~~~~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~- 226 (500)
T 1z63_A 148 VEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDN- 226 (500)
T ss_dssp CCEEEEEEETGGGGSCTTSHHHHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCH-
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCH-
T ss_conf 8728799808410178768999999960047189974677779999999999985877579989999985251114668-
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 98747899988879999999758765312555--6311999629999961899999999999975055453211378874
Q 000740 794 NSTSEDVKIMNQRSHILYEQLKGFVQRMDMNV--VKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRK 871 (1321)
Q Consensus 794 ~st~~dv~~~~~r~~~L~~~L~~fv~Rr~~~~--v~~~LP~K~e~vv~v~LS~~Q~~LY~~~l~~~~~~~~~~~~~~~~~ 871 (1321)
.....|...+.+++.|+++.+ +...||++.+.+++++|++.|+.+|+.+..................
T Consensus 227 -----------~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 295 (500)
T 1z63_A 227 -----------MAKEELKAIISPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKG 295 (500)
T ss_dssp -----------HHHHHHHHHHTTTEECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHH
T ss_pred -----------HHHHHHHHHHHHHEEEECCCCCCHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf -----------899999999766745502554241122999758999818999999999999999999998642321067
Q ss_pred HHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 29999999999953920110000169999755557887533542110368876500100278998631123445432100
Q 000740 872 SFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEH 951 (1321)
Q Consensus 872 ~~l~~l~~LrkicnHP~Ll~~~~~~~~~~~ed~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ll~~~ 951 (1321)
.++..+..++++|+||.++....
T Consensus 296 ~~~~~l~~lr~~~~~p~l~~~~~--------------------------------------------------------- 318 (500)
T 1z63_A 296 MILSTLLKLKQIVDHPALLKGGE--------------------------------------------------------- 318 (500)
T ss_dssp HHHHHHHHHHHHTTCTHHHHCSC---------------------------------------------------------
T ss_pred HHHHHHHHHHHHHCCHHHHCCCC---------------------------------------------------------
T ss_conf 99999999998817998843852---------------------------------------------------------
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHH
Q ss_conf 11224667049999999997311999199990753269999999830999998763323797279437998999999999
Q 000740 952 TYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLV 1031 (1321)
Q Consensus 952 ~~~~~~~SgKl~~L~elL~~~~~~G~KVLIFSQ~~~tLdlLe~~L~~l~~~~~~~~~w~~Gi~y~rLDGsts~~eRq~lI 1031 (1321)
.....|+|+..+.++|......++|+|||+++..+++.|+.+|.. ..|+.+.+++|+++..+|++++
T Consensus 319 --~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~-----------~~~~~~~~~~g~~~~~~R~~~~ 385 (500)
T 1z63_A 319 --QSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEK-----------ELNTEVPFLYGELSKKERDDII 385 (500)
T ss_dssp --CCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHH-----------HHTCCCCEEETTSCHHHHHHHH
T ss_pred --CHHHCCHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHH-----------HHCCCEEEEECCCCHHHHHHHH
T ss_conf --011115529999999999872688689997218899999999988-----------5388769997999999999999
Q ss_pred HHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHH
Q ss_conf 99818899982189952442333458456797999909999002333535121039988689999981899699999999
Q 000740 1032 ERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQ 1111 (1321)
Q Consensus 1032 ~~Fn~~~n~~v~VlLISTkAGg~GLNLt~AnrVIi~D~~WNPs~d~QAigRv~RiGQkK~V~VYRLia~gTIEEkI~~rq 1111 (1321)
++|++++ .++++|+||+++++||||++|++||+||++|||..+.||+||++|+||+++|+||+|++.+|+|++|++++
T Consensus 386 ~~F~~~~--~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~ 463 (500)
T 1z63_A 386 SKFQNNP--SVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLL 463 (500)
T ss_dssp HHHHHCT--TCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHH
T ss_pred HHHCCCC--CCCEEEEECCCCCCCCCHHHCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCHHHHHHHHH
T ss_conf 9960899--98779995333557774455888999589989545899999888738987069999774898999999999
Q ss_pred HHHHHHHHHHHCCC-CCCCCCCHHHHHHHHCCCCC
Q ss_conf 99999999870533-10245799999871258999
Q 000740 1112 VTKEGLAARVVDRQ-QVHRTISKEEMLHLFEFGDD 1145 (1321)
Q Consensus 1112 ~~K~~La~~Vvd~~-~~~r~~s~~EL~eLf~~~~~ 1145 (1321)
..|+.++..+++.. .....++.+||.+||.+...
T Consensus 464 ~~K~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 498 (500)
T 1z63_A 464 AFKRSLFKDIISSGDSWITELSTEELRKVIELSVG 498 (500)
T ss_dssp TTCSSSSSSGGGSTTGGGGSSCHHHHHHHHSCCC-
T ss_pred HHHHHHHHHHHHCCCCHHCCCCHHHHHHHHCCCCC
T ss_conf 99999999986068502115999999999646889
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=1.00 E-value=1 Score=465.05 Aligned_cols=445 Identities=19% Similarity=0.186 Sum_probs=321.7
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHH
Q ss_conf 02213088999999999999985542046899866199838997669999999999998211489742798164579999
Q 000740 562 ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNW 641 (1321)
Q Consensus 562 l~~~LkphQ~eGV~fL~e~~~~sl~r~k~~~~g~GgILADeMGLGKTlQaIali~~ll~~~~~~~k~vLIVvP~sLi~nW 641 (1321)
....|+|||.+++.|++. ..+.|+||||+||+|||+++++++..++..+. .+++|||||.+++.||
T Consensus 150 ~~~~LrpyQ~eav~~~l~------------~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~--~~rvLIVvP~sLl~Qw 215 (968)
T 3dmq_A 150 QRTSLIPHQLNIAHDVGR------------RHAPRVLLADEVGLGKTIEAGMILHQQLLSGA--AERVLIIVPETLQHQW 215 (968)
T ss_dssp CSSCCCHHHHHHHHHHHH------------SSSCEEEECCCTTSCHHHHHHHHHHHHHHTSS--CCCEEEECCTTTHHHH
T ss_pred CCCCCCHHHHHHHHHHHH------------HCCCCEEEECCCCCCHHHHHHHHHHHHHHHCC--CCEEEEEECHHHHHHH
T ss_conf 899970999999999997------------05898898789997599999999999998189--9829999578889999
Q ss_pred HHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 99999878999988199994485256999999998506979998122000123463211134689987541279989999
Q 000740 642 KQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVC 721 (1321)
Q Consensus 642 ~~Ei~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~ViIisY~~lr~ls~~~~~~d~~~~~~i~~lL~~~~dlVIi 721 (1321)
..||.+|++ +.+.++++.................+|+|+||+++.... . ....+....|++||+
T Consensus 216 ~~E~~~~f~-----l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~--------~---~~~~l~~~~~dlVIv 279 (968)
T 3dmq_A 216 LVEMLRRFN-----LRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSK--------Q---RLEHLCEAEWDLLVV 279 (968)
T ss_dssp HHHHHHHSC-----CCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTST--------T---TTHHHHTSCCCEEEE
T ss_pred HHHHHHHHC-----CCEEEECCCHHHHHHHHCCCCCCCCCEEEECHHHHHHCH--------H---HHHHHHHCCCCEEEE
T ss_conf 999999869-----987998062055543200364456898997689986487--------8---888764158778974
Q ss_pred CCCCCCCCCCHHH---HHHHHHC--CCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCC---------
Q ss_conf 1984238850157---8998512--3550999836889881356786532102699999588985205874---------
Q 000740 722 DEAHMIKNTRADT---TQALKQV--KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPI--------- 787 (1321)
Q Consensus 722 DEAH~IKN~~S~~---skal~~L--~t~~RilLTGTPiqNnL~EL~sLl~FL~p~~Lgs~~eF~~~f~~pI--------- 787 (1321)
||||+++|..+.. ++++..+ +++++|+|||||++|++.|+|++++|+.|+.+++...|...+....
T Consensus 280 DEAH~~kn~~~~~s~~~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l 359 (968)
T 3dmq_A 280 DEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAML 359 (968)
T ss_dssp CCSSCCCCBTTBCCHHHHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 44676258887542999999998625785899976876698799999998259301189899999998578899999987
Q ss_pred CCCCC-C-----------------------CCCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 46778-9-----------------------9874789998887999999975-----87653125556311999629999
Q 000740 788 ENGQH-T-----------------------NSTSEDVKIMNQRSHILYEQLK-----GFVQRMDMNVVKKDLPPKTVFVI 838 (1321)
Q Consensus 788 ~~g~~-~-----------------------~st~~dv~~~~~r~~~L~~~L~-----~fv~Rr~~~~v~~~LP~K~e~vv 838 (1321)
..+.. . ...... ....+...+..++. ..+.|..+..+ ..+|++..+.+
T Consensus 360 ~~~~~~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~--~~~~~~~~i~~lld~~g~~~~l~r~~r~~i-~~~p~r~~~~~ 436 (968)
T 3dmq_A 360 LAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSED--AQSARQELVSMLMDRHGTSRVLFRNTRNGV-KGFPKRELHTI 436 (968)
T ss_dssp TTSCCCCGGGTTSSTTTTCTTCSSTTGGGTCCCSSC--STTTHHHHHHHHGGGCTTTTTEECCCTTTC-CCCCCCCCCEE
T ss_pred HCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCHHHH--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-CCCCHHHEEEE
T ss_conf 426789988999999884203367887503622233--379999999999986173326563226554-55671115752
Q ss_pred EECCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 96189999999999997505545321137887429999999999953920110000169999755557887533542110
Q 000740 839 TVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVV 918 (1321)
Q Consensus 839 ~v~LS~~Q~~LY~~~l~~~~~~~~~~~~~~~~~~~l~~l~~LrkicnHP~Ll~~~~~~~~~~~ed~~d~~~d~~~d~~~~ 918 (1321)
.+.+++.++.+|........... ... . ...+.+|..+....
T Consensus 437 ~l~~~~~~~~~~~~~~~~~~~~~---~~~----~--------~~~~l~pe~~~~~l------------------------ 477 (968)
T 3dmq_A 437 KLPLPTQYQTAIKVSGIMGARKS---AED----R--------ARDMLYPERIYQEF------------------------ 477 (968)
T ss_dssp EECCCHHHHHHHHHHHHTTCCSS---GGG----G--------THHHHCSGGGTTTT------------------------
T ss_pred ECCCCHHHHHHHHHHHHHHHHHH---HHH----H--------HHHHCCHHHHHHHH------------------------
T ss_conf 36899999999998754302126---677----7--------76410859899876------------------------
Q ss_pred CCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHC
Q ss_conf 36887650010027899863112344543210011224667049999999997311999199990753269999999830
Q 000740 919 IGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSK 998 (1321)
Q Consensus 919 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~SgKl~~L~elL~~~~~~G~KVLIFSQ~~~tLdlLe~~L~~ 998 (1321)
..........++|+..|.+++.. ..+.|+||||++..+++.|..+|..
T Consensus 478 ------------------------------~~~~~~~~~~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~~~l~~~L~~ 525 (968)
T 3dmq_A 478 ------------------------------EGDNATWWNFDPRVEWLMGYLTS--HRSQKVLVICAKAATALQLEQVLRE 525 (968)
T ss_dssp ------------------------------TSSSCCTTTTSHHHHHHHHHHHH--TSSSCCCEECSSTHHHHHHHHHHHT
T ss_pred ------------------------------HHHHHCCCCCCHHHHHHHHHHHH--CCCCCEEEEECCHHHHHHHHHHHHH
T ss_conf ------------------------------43331356856799999999983--7999789996959999999999998
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCHHHH
Q ss_conf 99999876332379727943799899999999999818899982189952442333458456797999909999002333
Q 000740 999 LPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1078 (1321)
Q Consensus 999 l~~~~~~~~~w~~Gi~y~rLDGsts~~eRq~lI~~Fn~~~n~~v~VlLISTkAGg~GLNLt~AnrVIi~D~~WNPs~d~Q 1078 (1321)
. .|+.+..++|+++..+|+.+++.|+++.+ .+ .+|++|+++++|||++.|++||+||++|||..+.|
T Consensus 526 ~-----------~g~~~~~lhG~~~~~~R~~~l~~F~~g~~-~~-~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q 592 (968)
T 3dmq_A 526 R-----------EGIRAAVFHEGMSIIERDRAAAWFAEEDT-GA-QVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQ 592 (968)
T ss_dssp T-----------TCCCEEEECTTSCTTHHHHHHHHHHSTTS-SC-EEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHH
T ss_pred H-----------CCCCEEEEECCCCHHHHHHHHHHHHCCCC-CC-CEEEECCHHHCCCCCCCCCEEEEECCCCCHHHHHH
T ss_conf 7-----------49838998499999999999999747997-63-08985334316888556767999569998789998
Q ss_pred HHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 535121039988689999981899699999999999999998705
Q 000740 1079 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVD 1123 (1321)
Q Consensus 1079 AigRv~RiGQkK~V~VYRLia~gTIEEkI~~rq~~K~~La~~Vvd 1123 (1321)
++||++|+||++.|+||+++..+|+|++|++.+..|..+....+.
T Consensus 593 ~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~~~~~~ 637 (968)
T 3dmq_A 593 RIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCP 637 (968)
T ss_dssp HHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCSSSCCS
T ss_pred HHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCEECCCC
T ss_conf 701143079985089998057771999999999867876353799
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=375.34 Aligned_cols=447 Identities=16% Similarity=0.117 Sum_probs=281.4
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCH-HHHHHH
Q ss_conf 2213088999999999999985542046899866199838997669999999999998211489742798164-579999
Q 000740 563 SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNW 641 (1321)
Q Consensus 563 ~~~LkphQ~eGV~fL~e~~~~sl~r~k~~~~g~GgILADeMGLGKTlQaIali~~ll~~~~~~~k~vLIVvP~-sLi~nW 641 (1321)
...|+|||.+++.|++. + ++||+++||+|||+++++++...+.. ..+++|||||. +|+.||
T Consensus 7 ~~~l~~~Q~~~i~~~~~--------------~-~~ll~~~tG~GKT~~~~~~~~~~~~~---~~~~~liv~P~~~L~~q~ 68 (494)
T 1wp9_A 7 LIQPRIYQEVIYAKCKE--------------T-NCLIVLPTGLGKTLIAMMIAEYRLTK---YGGKVLMLAPTKPLVLQH 68 (494)
T ss_dssp HHCCCHHHHHHHHHGGG--------------S-CEEEECCTTSCHHHHHHHHHHHHHHH---SCSCEEEECSSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH--------------C-CEEEECCCCCCHHHHHHHHHHHHHHC---CCCEEEEEECCHHHHHHH
T ss_conf 87863999999999961--------------9-98999189987899999999999864---798599997888999999
Q ss_pred HHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 99999878999988199994485256999999998506979998122000123463211134689987541279989999
Q 000740 642 KQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVC 721 (1321)
Q Consensus 642 ~~Ei~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~ViIisY~~lr~ls~~~~~~d~~~~~~i~~lL~~~~dlVIi 721 (1321)
.+++.+|+.. ....+..+++........ . .....+|+|+||+.+...... ..+....|++||+
T Consensus 69 ~~~~~~~~~~--~~~~v~~~~g~~~~~~~~--~-~~~~~~ivv~T~~~l~~~~~~------------~~~~~~~~~~vIi 131 (494)
T 1wp9_A 69 AESFRRLFNL--PPEKIVALTGEKSPEERS--K-AWARAKVIVATPQTIENDLLA------------GRISLEDVSLIVF 131 (494)
T ss_dssp HHHHHHHBCS--CGGGEEEECSCSCHHHHH--H-HHHHCSEEEECHHHHHHHHHT------------TSCCTTSCSEEEE
T ss_pred HHHHHHHHCC--CHHHEEEEECCCCHHHHH--H-HCCCCCEEEECHHHHHHHHHC------------CCCCHHHCEEEEE
T ss_conf 9999987475--611168760775335566--5-335798999639999999860------------8715654108999
Q ss_pred CCCCCCCCCCHHHH--HHHH-HCCCCEEEEEECCCCCCCHHHHHHHHHHHCCC---CCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf 19842388501578--9985-12355099983688988135678653210269---999958898520587446778998
Q 000740 722 DEAHMIKNTRADTT--QALK-QVKCQRRIALTGSPLQNNLMEYYCMVDFVREG---FLGSSHEFRNRFQNPIENGQHTNS 795 (1321)
Q Consensus 722 DEAH~IKN~~S~~s--kal~-~L~t~~RilLTGTPiqNnL~EL~sLl~FL~p~---~Lgs~~eF~~~f~~pI~~g~~~~s 795 (1321)
||||++++..+... ..+. .....++|+|||||. |+..+++.++.++.+. .......+...|..+.........
T Consensus 132 DEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (494)
T 1wp9_A 132 DEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVD 210 (494)
T ss_dssp ETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEEC
T ss_pred ECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCC-CCCHHHHHHHHHCCHHEEECCCCCCHHHHHHCCCCCEEEEECC
T ss_conf 787566888819999999973288776999956998-8857899999850700050267875878875278742689568
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHH-----HHHHHHHHHHHCCCCCCCCHHHH-
Q ss_conf 747899988879999999758765312555631199962999996189999-----99999999750554532113788-
Q 000740 796 TSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQ-----RRLYKRFLDLHGFTNDRVSNEKI- 869 (1321)
Q Consensus 796 t~~dv~~~~~r~~~L~~~L~~fv~Rr~~~~v~~~LP~K~e~vv~v~LS~~Q-----~~LY~~~l~~~~~~~~~~~~~~~- 869 (1321)
... ....+...+.+++.++........+..... ..++... ..++.. +..... ........
T Consensus 211 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~ 276 (494)
T 1wp9_A 211 LPE-------IYKEVRKLLREMLRDALKPLAETGLLESSS----PDIPKKEVLRAGQIINEE-MAKGNH--DLRGLLLYH 276 (494)
T ss_dssp CCH-------HHHHHHHHHHHHHHHHHHHHHHHTSSSCCC----TTSCHHHHHHHHHHHHHH-HTTTCC--STTTHHHHH
T ss_pred CCH-------HHHHHHHHHHHHHHHHHHHHHHHCCCCCCC----CCCCHHHHHHHHHHHHHH-HHCCCC--CHHHHHHHH
T ss_conf 858-------899999989899999999999735565457----773355789999999987-533563--113479999
Q ss_pred -----------------HHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCC
Q ss_conf -----------------742999999999995392011000016999975555788753354211036887650010027
Q 000740 870 -----------------RKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQG 932 (1321)
Q Consensus 870 -----------------~~~~l~~l~~LrkicnHP~Ll~~~~~~~~~~~ed~~d~~~d~~~d~~~~~~~~~~~~~d~~~~ 932 (1321)
...+...+..+...+.++..... ....
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----------------------------------~~~~-- 320 (494)
T 1wp9_A 277 AMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKAS----------------------------------KEIF-- 320 (494)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHH----------------------------------HHHH--
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCHHH----------------------------------HHHH--
T ss_conf 8888899999999852579999999999875223211455----------------------------------6666--
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 89986311234454321001122466704999999999731--1999199990753269999999830999998763323
Q 000740 933 KNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCS--NMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWK 1010 (1321)
Q Consensus 933 ~~~~~~~~~~~~~~ll~~~~~~~~~~SgKl~~L~elL~~~~--~~G~KVLIFSQ~~~tLdlLe~~L~~l~~~~~~~~~w~ 1010 (1321)
.+.... ....... ........++|+..|.++|.... ..+.|+|||+++..+++.+..+|..
T Consensus 321 --~~~~~~-~~~~~~~--~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~------------ 383 (494)
T 1wp9_A 321 --SDKRMK-KAISLLV--QAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVK------------ 383 (494)
T ss_dssp --TSHHHH-HHHHHHH--HHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHH------------
T ss_pred --HHHHHH-HHHHHHH--HHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHH------------
T ss_conf --507889-8999999--88745899869999999999984368997599997668999999999997------------
Q ss_pred CCCCEEECCC--------CCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHH
Q ss_conf 7972794379--------98999999999998188999821899524423334584567979999099990023335351
Q 000740 1011 KGKDWYRLDG--------RTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYR 1082 (1321)
Q Consensus 1011 ~Gi~y~rLDG--------sts~~eRq~lI~~Fn~~~n~~v~VlLISTkAGg~GLNLt~AnrVIi~D~~WNPs~d~QAigR 1082 (1321)
.|+.+.+++| +++..+|+.++++|+++ .+. +|++|.++++||||+++++||+||++|||..+.|++||
T Consensus 384 ~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~---~~~-vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR 459 (494)
T 1wp9_A 384 DGIKAKRFVGQASKENDRGLSQREQKLILDEFARG---EFN-VLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGR 459 (494)
T ss_dssp TTCCEEEECCSSCC-------CCHHHHHHHHHHHT---SCS-EEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTT
T ss_pred CCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCC---CCE-EEEECCCCCCCCCCHHCCEEEEECCCCCHHHHHHHHHH
T ss_conf 59980799656654444458999999999998669---946-99988841258871437989992898878999998752
Q ss_pred HHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 2103998868999998189969999999999999999
Q 000740 1083 AWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAA 1119 (1321)
Q Consensus 1083 v~RiGQkK~V~VYRLia~gTIEEkI~~rq~~K~~La~ 1119 (1321)
++|.|| +.+|+|++.+|+|++++.++..|..++.
T Consensus 460 ~~R~g~---g~~~~l~~~~t~ee~~~~~~~~k~~~~~ 493 (494)
T 1wp9_A 460 TGRHMP---GRVIILMAKGTRDEAYYWSSRQKEKIMQ 493 (494)
T ss_dssp SCSCCC---SEEEEEEETTSHHHHHHHHCC-------
T ss_pred CCCCCC---CEEEEEEECCCHHHHHHHHHHHHHHHHC
T ss_conf 257788---4699999569878999998887898730
No 6
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=1.00 E-value=1 Score=363.30 Aligned_cols=257 Identities=29% Similarity=0.389 Sum_probs=222.2
Q ss_pred HHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCC
Q ss_conf 65312555631199962999996189999999999997505545321137887429999999999953920110000169
Q 000740 818 VQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKG 897 (1321)
Q Consensus 818 v~Rr~~~~v~~~LP~K~e~vv~v~LS~~Q~~LY~~~l~~~~~~~~~~~~~~~~~~~l~~l~~LrkicnHP~Ll~~~~~~~ 897 (1321)
-+||++.++..+||+|.+++++|+||+.|+++|+.++..................++..++.||++|+||.++....
T Consensus 13 ~~rr~k~~v~~~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lrq~~~hP~l~~~~~--- 89 (271)
T 1z5z_A 13 GLVPRGSHMASDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGE--- 89 (271)
T ss_dssp ---------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTCTHHHHCSC---
T ss_pred CCCCCHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHCCCC---
T ss_conf 64164877875199977999981899999999999999999999740352128899999999999848998846873---
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99975555788753354211036887650010027899863112344543210011224667049999999997311999
Q 000740 898 YPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGD 977 (1321)
Q Consensus 898 ~~~~ed~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~SgKl~~L~elL~~~~~~G~ 977 (1321)
.....|+|+..|.++|..+...|+
T Consensus 90 --------------------------------------------------------~~~~~s~K~~~L~~ll~~~~~~~~ 113 (271)
T 1z5z_A 90 --------------------------------------------------------QSVRRSGKMIRTMEIIEEALDEGD 113 (271)
T ss_dssp --------------------------------------------------------CCSTTCHHHHHHHHHHHHHHHTTC
T ss_pred --------------------------------------------------------CCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf --------------------------------------------------------223468999999999999986799
Q ss_pred EEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCC
Q ss_conf 19999075326999999983099999876332379727943799899999999999818899982189952442333458
Q 000740 978 KSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGIN 1057 (1321)
Q Consensus 978 KVLIFSQ~~~tLdlLe~~L~~l~~~~~~~~~w~~Gi~y~rLDGsts~~eRq~lI~~Fn~~~n~~v~VlLISTkAGg~GLN 1057 (1321)
|+||||+|+.++++|+.+|.. ..|+.+.+++|+++..+|+.++++|++++ .+.+||+||++||+|||
T Consensus 114 kvlIFs~~~~~~~~l~~~L~~-----------~~g~~~~~l~G~~~~~~R~~~i~~F~~~~--~~~v~L~st~~~g~Gln 180 (271)
T 1z5z_A 114 KIAIFTQFVDMGKIIRNIIEK-----------ELNTEVPFLYGELSKKERDDIISKFQNNP--SVKFIVLSVKAGGFGIN 180 (271)
T ss_dssp CEEEEESCHHHHHHHHHHHHH-----------HHCSCCCEECTTSCHHHHHHHHHHHHHCT--TCCEEEEECCTTCCCCC
T ss_pred EEEEEECCHHHHHHHHHHHHH-----------HCCCCEEEEECCCCHHHHHHHHHHHCCCC--CCCEEEEEHHHHCCCCC
T ss_conf 699995519999999999987-----------33984799979999999999999832899--99789972235158867
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCHHHH
Q ss_conf 456797999909999002333535121039988689999981899699999999999999998705331-0245799999
Q 000740 1058 LHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQ-VHRTISKEEM 1136 (1321)
Q Consensus 1058 Lt~AnrVIi~D~~WNPs~d~QAigRv~RiGQkK~V~VYRLia~gTIEEkI~~rq~~K~~La~~Vvd~~~-~~r~~s~~EL 1136 (1321)
|++|++||+||+||||..+.||+||+||+||+++|+||+|++.+|+||+|++++..|+.+++.+++... ....++.+||
T Consensus 181 l~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~~~~~K~~l~~~~~~~~~~~~~~~~~~~l 260 (271)
T 1z5z_A 181 LTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGDSWITELSTEEL 260 (271)
T ss_dssp CTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHHHCHHHHTTGGGGTTHHHHTSCHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHH
T ss_conf 64489999979999851899999852323899856999985498899999999999999999997167054323899999
Q ss_pred HHHHCCCCCC
Q ss_conf 8712589999
Q 000740 1137 LHLFEFGDDE 1146 (1321)
Q Consensus 1137 ~eLf~~~~~e 1146 (1321)
.+||.++++.
T Consensus 261 ~~l~~~~~~~ 270 (271)
T 1z5z_A 261 RKVIELSVGG 270 (271)
T ss_dssp HHHHSCCCTT
T ss_pred HHHHCCCCCC
T ss_conf 9996558899
No 7
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=1.00 E-value=1 Score=341.08 Aligned_cols=377 Identities=19% Similarity=0.182 Sum_probs=266.9
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCH-HHHHHH
Q ss_conf 2213088999999999999985542046899866199838997669999999999998211489742798164-579999
Q 000740 563 SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNW 641 (1321)
Q Consensus 563 ~~~LkphQ~eGV~fL~e~~~~sl~r~k~~~~g~GgILADeMGLGKTlQaIali~~ll~~~~~~~k~vLIVvP~-sLi~nW 641 (1321)
...|+|||.+++.+++ .+.++||+++||+|||++++.++... .+++|||||. +|+.||
T Consensus 91 ~~~l~~~Q~~ai~~i~--------------~~~~~ll~~~TGsGKT~~~l~~i~~~-------~~~~Lvl~P~~~L~~Q~ 149 (472)
T 2fwr_A 91 EISLRDYQEKALERWL--------------VDKRGCIVLPTGSGKTHVAMAAINEL-------STPTLIVVPTLALAEQW 149 (472)
T ss_dssp CCCBCHHHHHHHHHHT--------------TTTEEEEECCTTSCHHHHHHHHHHHH-------CSCEEEEESSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH--------------HCCCEEEEECCCCCHHHHHHHHHHHC-------CCCEEEEECCHHHHHHH
T ss_conf 9986889999999999--------------65987999699998899999999980-------99999998799999999
Q ss_pred HHHHHHHCCCCCCCEE-EEEECCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 9999987899998819-999448525699999999850697999812200012346321113468998754127998999
Q 000740 642 KQEFMKWRPSELKPLR-VFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILV 720 (1321)
Q Consensus 642 ~~Ei~kw~p~~~~~l~-V~~~~~~~~~~r~~~l~~~~~~~~ViIisY~~lr~ls~~~~~~d~~~~~~i~~lL~~~~dlVI 720 (1321)
.++|.+| + +. +..+++... ...+|+|+||+++.... ..+...|++||
T Consensus 150 ~~~~~~~-~-----~~~v~~~~g~~~-----------~~~~Ivv~T~~~l~~~~---------------~~~~~~~~liI 197 (472)
T 2fwr_A 150 KERLGIF-G-----EEYVGEFSGRIK-----------ELKPLTVSTYDSAYVNA---------------EKLGNRFMLLI 197 (472)
T ss_dssp HHHGGGG-C-----GGGEEEBSSSCB-----------CCCSEEEEEHHHHHHTH---------------HHHTTTCSEEE
T ss_pred HHHHHHC-C-----CCCEEEECCCCC-----------CCCCEEEEECHHHHHHH---------------HHHCCCCCEEE
T ss_conf 9999967-9-----963699878767-----------76778999768999779---------------97368777899
Q ss_pred ECCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf 91984238850157899851235509998368898813567865321026999995889852058744677899874789
Q 000740 721 CDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDV 800 (1321)
Q Consensus 721 iDEAH~IKN~~S~~skal~~L~t~~RilLTGTPiqNnL~EL~sLl~FL~p~~Lgs~~eF~~~f~~pI~~g~~~~st~~dv 800 (1321)
+||+|++.++... ..+..+.+.++++|||||.+++-.+. .
T Consensus 198 vDEaH~~~~~~~~--~~~~~~~~~~~l~lSATp~~~~~~~~-~------------------------------------- 237 (472)
T 2fwr_A 198 FDEVHHLPAESYV--QIAQMSIAPFRLGLTATFEREDGRHE-I------------------------------------- 237 (472)
T ss_dssp EETGGGTTSTTTH--HHHHTCCCSEEEEEESCCCCTTSGGG-S-------------------------------------
T ss_pred EECCCCCCCHHHH--HHHHHCCCCEEEEEECCCCCCCCHHH-H-------------------------------------
T ss_conf 9897578976899--99973577818999327668897789-9-------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9988879999999758765312555631-199962999996189999999999997505545321137887429999999
Q 000740 801 KIMNQRSHILYEQLKGFVQRMDMNVVKK-DLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQA 879 (1321)
Q Consensus 801 ~~~~~r~~~L~~~L~~fv~Rr~~~~v~~-~LP~K~e~vv~v~LS~~Q~~LY~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 879 (1321)
+...+.+.+.+....++.. .+++.....+.+.+++.++..|..+..........
T Consensus 238 ---------l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---------------- 292 (472)
T 2fwr_A 238 ---------LKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRA---------------- 292 (472)
T ss_dssp ---------HHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSS----------------
T ss_pred ---------HHHHHCCEEEECCHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHH----------------
T ss_conf ---------9997298576547898706767881899998589989999999999999999986----------------
Q ss_pred HHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99995392011000016999975555788753354211036887650010027899863112344543210011224667
Q 000740 880 LAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYS 959 (1321)
Q Consensus 880 LrkicnHP~Ll~~~~~~~~~~~ed~~d~~~d~~~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~S 959 (1321)
..+... ....+. ........ ............ .........+
T Consensus 293 -------~~~~~~-~~~~~~---------------~~~~~~~~--------~~~~~~~~~~~~-------~~~~~~~~~~ 334 (472)
T 2fwr_A 293 -------RGITLR-RAEDFN---------------KIVMASGY--------DERAYEALRAWE-------EARRIAFNSK 334 (472)
T ss_dssp -------CCCTTT-CCSSST---------------TTTTTTCC--------SSSSSTTTHHHH-------HHHHHHHSCS
T ss_pred -------CCCCCC-CHHHHH---------------HHHHHHCC--------CHHHHHHHHHHH-------HHHHHHHCCH
T ss_conf -------475422-446689---------------99987236--------988999999999-------9999763373
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 04999999999731199919999075326999999983099999876332379727943799899999999999818899
Q 000740 960 GKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLN 1039 (1321)
Q Consensus 960 gKl~~L~elL~~~~~~G~KVLIFSQ~~~tLdlLe~~L~~l~~~~~~~~~w~~Gi~y~rLDGsts~~eRq~lI~~Fn~~~n 1039 (1321)
.|+..|.+++.. ..++|+|||+++..+++.+...|. +..++|.++..+|+.++++|+++
T Consensus 335 ~k~~~l~~~l~~--~~~~k~lvF~~~~~~~~~l~~~l~-----------------~~~~~g~~~~~~R~~~~~~F~~g-- 393 (472)
T 2fwr_A 335 NKIRKLREILER--HRKDKIIIFTRHNELVYRISKVFL-----------------IPAITHRTSREEREEILEGFRTG-- 393 (472)
T ss_dssp HHHHHHHHHHHH--TSSSCBCCBCSCHHHHHHHHHHTT-----------------CCBCCSSSCSHHHHTHHHHHHHS--
T ss_pred HHHHHHHHHHHH--CCCCCEEEEECCHHHHHHHHHHHC-----------------CCEEECCCCHHHHHHHHHHHHCC--
T ss_conf 899999999985--789838999797999999999748-----------------65562899999999999998679--
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCC-CCEEEEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 98218995244233345845679799990999900233353512103998-86899999818996999999999999999
Q 000740 1040 KRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQT-KPVFAYRLMAHGTMEEKIYKRQVTKEGLA 1118 (1321)
Q Consensus 1040 ~~v~VlLISTkAGg~GLNLt~AnrVIi~D~~WNPs~d~QAigRv~RiGQk-K~V~VYRLia~gTIEEkI~~rq~~K~~La 1118 (1321)
.+. +|++|+++++|+|++.++.||++|++|||..+.|++||++|.||. +.|+||+|++.+|+|+++.+++..|..++
T Consensus 394 -~~~-vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~~~~~r~~~~~~a 471 (472)
T 2fwr_A 394 -RFR-AIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVNTARRRKNAAKGA 471 (472)
T ss_dssp -SCS-BCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC---------------
T ss_pred -CCC-EEEECCCHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCC
T ss_conf -988-899857051484620286899989999888999987631577799853999999819985379999998765058
No 8
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=334.51 Aligned_cols=502 Identities=15% Similarity=0.126 Sum_probs=280.5
Q ss_pred CCCCCCH--HHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCC-CCCEEEE
Q ss_conf 2369500--221308899999999999998554204689986619983899766999999999999821148-9742798
Q 000740 556 VRIPSSI--SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLG-LRTALIV 632 (1321)
Q Consensus 556 v~vp~~l--~~~LkphQ~eGV~fL~e~~~~sl~r~k~~~~g~GgILADeMGLGKTlQaIali~~ll~~~~~~-~k~vLIV 632 (1321)
+..|..+ ...|+|||.+++.++. .+.++|++++||+|||++++..+...+.....+ .+++|||
T Consensus 237 ~~~~~~~~g~~~l~~~Q~~~i~~~l--------------~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl 302 (797)
T 4a2q_A 237 IGKPPPVYETKKARSYQIELAQPAI--------------NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFL 302 (797)
T ss_dssp -----------CCCHHHHHHHHHHH--------------TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEE
T ss_pred HCCCHHHCCCCCCCHHHHHHHHHHH--------------HCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 2485442388999999999999998--------------09998999699972999999999999984665679969999
Q ss_pred CCHH-HHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 1645-799999999987899998819999448525699999999850697999812200012346321113468998754
Q 000740 633 TPVN-VLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA 711 (1321)
Q Consensus 633 vP~s-Li~nW~~Ei~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~ViIisY~~lr~ls~~~~~~d~~~~~~i~~l 711 (1321)
||.. |+.||..+|.+|++.. .+.+..+++...... ....+....+|+|+||+.+..........
T Consensus 303 ~Pt~~L~~Q~~~~~~~~~~~~--~~~v~~~~g~~~~~~--~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~----------- 367 (797)
T 4a2q_A 303 ATKVPVYEQQKNVFKHHFERQ--GYSVQGISGENFSNV--SVEKVIEDSDIIVVTPQILVNSFEDGTLT----------- 367 (797)
T ss_dssp CSSHHHHHHHHHHHHHHHGGG--TCCEEEECCC-------CHHHHHHTCSEEEECHHHHHHHHHSSSCC-----------
T ss_pred ECCHHHHHHHHHHHHHHCCCC--CCEEEEEECCCCHHH--HHHHHHCCCCEEEECHHHHHHHHHHCCCC-----------
T ss_conf 698999999999999861437--946999969962324--69974079999997669999999826546-----------
Q ss_pred HCCCCCEEEECCCCCCCCCCHHHHHHHHHC---------CCCEEEEEECCCCCCCHHHH----------HHHHHHHCC-C
Q ss_conf 127998999919842388501578998512---------35509998368898813567----------865321026-9
Q 000740 712 LQDGPDILVCDEAHMIKNTRADTTQALKQV---------KCQRRIALTGSPLQNNLMEY----------YCMVDFVRE-G 771 (1321)
Q Consensus 712 L~~~~dlVIiDEAH~IKN~~S~~skal~~L---------~t~~RilLTGTPiqNnL~EL----------~sLl~FL~p-~ 771 (1321)
....|++||+||||++.+..+ ....+..+ ...++++|||||.+++..++ +..+++-.. .
T Consensus 368 ~~~~~~~iViDEaH~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~ 446 (797)
T 4a2q_A 368 SLSIFTLMIFDECHNTTGNHP-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAIST 446 (797)
T ss_dssp CGGGCSEEEETTGGGCSTTSH-HHHHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEEC
T ss_pred CCCCCCEEEEECCCCCCCCCC-HHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEC
T ss_conf 513377899988635588764-9999999999763147887859997277554552248999999999998549848854
Q ss_pred CCCCHHHHHHHCCCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHH
Q ss_conf 99995889852058744677899--8747899988879999999758765312555631199962999996189999999
Q 000740 772 FLGSSHEFRNRFQNPIENGQHTN--STSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRL 849 (1321)
Q Consensus 772 ~Lgs~~eF~~~f~~pI~~g~~~~--st~~dv~~~~~r~~~L~~~L~~fv~Rr~~~~v~~~LP~K~e~vv~v~LS~~Q~~L 849 (1321)
.......+...+..|........ ...............++..+..+..... + ..+| ...+.. ..
T Consensus 447 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~---l-~~~~-------~~~~g~---~~ 512 (797)
T 4a2q_A 447 VRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDT---L-SQNS-------KKDFGT---QN 512 (797)
T ss_dssp CCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC-----------------------CCSS---HH
T ss_pred CCCCHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHHC-------CCCCCC---HH
T ss_conf 54317889973588854888457777867899999999999999999875677---6-5300-------001140---56
Q ss_pred HHHHHHHHC----CC--CCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999997505----54--532113788742999999999995392011000016999975555788753354211036887
Q 000740 850 YKRFLDLHG----FT--NDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKP 923 (1321)
Q Consensus 850 Y~~~l~~~~----~~--~~~~~~~~~~~~~l~~l~~LrkicnHP~Ll~~~~~~~~~~~ed~~d~~~d~~~d~~~~~~~~~ 923 (1321)
|..++.... .. ............+......+++. ++...+.... +. ...... -.............
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~~~~~--~~---~~~~~~--l~~~~~~~~~~~~~ 584 (797)
T 4a2q_A 513 YEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKY-NDALIISEDA--RI---IDALSY--LTEFFTNVKNGPYT 584 (797)
T ss_dssp HHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHS--CH---HHHHHH--HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHCCC--CH---HHHHHH--HHHHHHHHHCCCCC
T ss_conf 7789999999877740343202567999999999999999-9887654132--58---889999--99999987504766
Q ss_pred CCCHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECCHHHHHHHHHHHHCCCC
Q ss_conf 65001002789986311234454321001122466704999999999731--1999199990753269999999830999
Q 000740 924 RNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCS--NMGDKSLVFSQSIPTLDLIEFYLSKLPR 1001 (1321)
Q Consensus 924 ~~~~d~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~SgKl~~L~elL~~~~--~~G~KVLIFSQ~~~tLdlLe~~L~~l~~ 1001 (1321)
.....+.. .+. .....+ ..........++|+..|.++|.... ..+.|+|||+++..+++.|..+|.....
T Consensus 585 ~~~~~l~~------~~~-~~~~~l-~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~ 656 (797)
T 4a2q_A 585 ELEQHLTA------KFQ-EKEPEL-IALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPI 656 (797)
T ss_dssp HHHHHHHH------HHH-TTHHHH-HHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCST
T ss_pred HHHHHHHH------HHH-HHHHHH-HHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCC
T ss_conf 89999999------999-999999-8763078889959999999999985058997089997958999999999974756
Q ss_pred CCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHH
Q ss_conf 99876332379727943799899999999999818899982189952442333458456797999909999002333535
Q 000740 1002 PGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIY 1081 (1321)
Q Consensus 1002 ~~~~~~~w~~Gi~y~rLDGsts~~eRq~lI~~Fn~~~n~~v~VlLISTkAGg~GLNLt~AnrVIi~D~~WNPs~d~QAig 1081 (1321)
..........|..+..++|+++..+|+.++++|+++ +.+. +|++|+++++|||+++++.||+||++|||..+.|++|
T Consensus 657 ~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~--g~~~-vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~G 733 (797)
T 4a2q_A 657 LNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTS--KDNR-LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRG 733 (797)
T ss_dssp TCSCCCEEC------------------------------CCS-EEEEECC-------CCCSEEEEESCCSCHHHHHTC--
T ss_pred CCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCC--CCCE-EEEECCCHHCCCCCHHCCEEEEECCCCCHHHHHHHCC
T ss_conf 466552189844775457898999999999985136--9704-9997480544797510898999489998899998538
Q ss_pred HHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 12103998868999998189969999999999999999870533
Q 000740 1082 RAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQ 1125 (1321)
Q Consensus 1082 Rv~RiGQkK~V~VYRLia~gTIEEkI~~rq~~K~~La~~Vvd~~ 1125 (1321)
| |+.+++.+|+|++.+++|++ +..+..|..+...++..-
T Consensus 734 R----GR~~~g~~i~l~~~~~~ee~-~~~~~~ke~~~~~~i~~l 772 (797)
T 4a2q_A 734 R----GRAAGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVEKI 772 (797)
T ss_dssp ---------CCCEEEEECCHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred C----CCCCCCEEEEEEECCCHHHH-HHHHHHHHHHHHHHHHHH
T ss_conf 8----87878659999728768899-998889999999999987
No 9
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=333.61 Aligned_cols=493 Identities=14% Similarity=0.152 Sum_probs=274.5
Q ss_pred CCCCCCH--HHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCC-CCCEEEE
Q ss_conf 2369500--221308899999999999998554204689986619983899766999999999999821148-9742798
Q 000740 556 VRIPSSI--SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLG-LRTALIV 632 (1321)
Q Consensus 556 v~vp~~l--~~~LkphQ~eGV~fL~e~~~~sl~r~k~~~~g~GgILADeMGLGKTlQaIali~~ll~~~~~~-~k~vLIV 632 (1321)
+..|..+ ...|+|||.+++.++. .|.++|++++||+|||++++..+...+.....+ .+++|||
T Consensus 237 ~~~~~~l~~~~~~r~~Q~~ai~~il--------------~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl 302 (936)
T 4a2w_A 237 IGKPPPVYETKKARSYQIELAQPAI--------------NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFL 302 (936)
T ss_dssp -----------CCCHHHHHHHHHHH--------------TTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEE
T ss_pred HCCCCCCCCCCCCCHHHHHHHHHHH--------------CCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 2376533478987799999999998--------------09989999699845999999999999973655689859999
Q ss_pred CCHH-HHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 1645-799999999987899998819999448525699999999850697999812200012346321113468998754
Q 000740 633 TPVN-VLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA 711 (1321)
Q Consensus 633 vP~s-Li~nW~~Ei~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~ViIisY~~lr~ls~~~~~~d~~~~~~i~~l 711 (1321)
||.. |+.||..+|.+|++.. .+.+..+++....... ...+....+|+|+||+.+......... .
T Consensus 303 ~Pt~~L~~Q~~~~~~~~~~~~--~~~v~~~~G~~~~~~~--~~~~~~~~~IvI~Tp~~L~~~l~~~~~-----------~ 367 (936)
T 4a2w_A 303 ATKVPVYEQQKNVFKHHFERQ--GYSVQGISGENFSNVS--VEKVIEDSDIIVVTPQILVNSFEDGTL-----------T 367 (936)
T ss_dssp CSSHHHHHHHHHHHHHHHHTT--TCCEEEECCC-----C--CHHHHHHCSEEEECHHHHHHHHHSSSC-----------C
T ss_pred ECCHHHHHHHHHHHHHHHCCC--CCEEEEEECCCCHHHH--HHHHCCCCCEEEECHHHHHHHHHCCCC-----------C
T ss_conf 698999999999999971216--9559999799631257--897416999999449999999871764-----------5
Q ss_pred HCCCCCEEEECCCCCCCCCCHHHHHHHHHC---------CCCEEEEEECCCCCCCHHHHHHHHHHH-------CCC----
Q ss_conf 127998999919842388501578998512---------355099983688988135678653210-------269----
Q 000740 712 LQDGPDILVCDEAHMIKNTRADTTQALKQV---------KCQRRIALTGSPLQNNLMEYYCMVDFV-------REG---- 771 (1321)
Q Consensus 712 L~~~~dlVIiDEAH~IKN~~S~~skal~~L---------~t~~RilLTGTPiqNnL~EL~sLl~FL-------~p~---- 771 (1321)
....|++||+||||++.+..+ ....+..+ ...++++|||||.+++..+++..++.+ ...
T Consensus 368 ~l~~~~liViDEaH~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~ 446 (936)
T 4a2w_A 368 SLSIFTLMIFDECHNTTGNHP-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAIST 446 (936)
T ss_dssp CGGGCSEEEEETGGGCSTTCH-HHHHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEEC
T ss_pred CCCCCCEEEEECCCCCCCCCC-HHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEC
T ss_conf 336787999987313599866-9999999999863137886739986388554540208999999999998549715534
Q ss_pred CCCCHHHHHHHCCCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHH
Q ss_conf 99995889852058744677899--8747899988879999999758765312555631199962999996189999999
Q 000740 772 FLGSSHEFRNRFQNPIENGQHTN--STSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRL 849 (1321)
Q Consensus 772 ~Lgs~~eF~~~f~~pI~~g~~~~--st~~dv~~~~~r~~~L~~~L~~fv~Rr~~~~v~~~LP~K~e~vv~v~LS~~Q~~L 849 (1321)
.......+...+..|........ ........... +...+..++..... ...++... ...+.. ..
T Consensus 447 ~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~----l~~~i~~~~~~~l~---~~~l~~~~----~~~~g~---~~ 512 (936)
T 4a2w_A 447 VRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISN----LMSETEALMRTIAY---VDTLSQNS----KKDFGT---QN 512 (936)
T ss_dssp CCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHHH----HHHHHHHHHHHC-------------------CCSS---HH
T ss_pred CCCCHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHH----HHHHHHHHHHHHHH---HHHHHHCC----CCCCCH---HH
T ss_conf 654489998753677623773365567579999999----99999999998876---65553202----233225---77
Q ss_pred HHHHHHHHC---CCCCCCCH---HHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999997505---54532113---788742999999999995392011000016999975555788753354211036887
Q 000740 850 YKRFLDLHG---FTNDRVSN---EKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKP 923 (1321)
Q Consensus 850 Y~~~l~~~~---~~~~~~~~---~~~~~~~l~~l~~LrkicnHP~Ll~~~~~~~~~~~ed~~d~~~d~~~d~~~~~~~~~ 923 (1321)
|..++.... ........ ......+......+++. ++...+.... +.. . ...
T Consensus 513 y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~-~~al~i~~~~--~~~---~--------~~~--------- 569 (936)
T 4a2w_A 513 YEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKY-NDALIISEDA--RII---D--------ALS--------- 569 (936)
T ss_dssp HHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHS--CHH---H--------HHH---------
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHCCH--HHH---H--------HHH---------
T ss_conf 9999999999887740553210357999999999999998-8887500204--288---8--------999---------
Q ss_pred CCCHHHCCCCCCCCC--CHHHHHHH------HHHHCCCCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECCHHHHHHHH
Q ss_conf 650010027899863--11234454------321001122466704999999999731--19991999907532699999
Q 000740 924 RNMNDFLQGKNDDGF--FQKDWWND------LLHEHTYKELDYSGKMVLLLDILTMCS--NMGDKSLVFSQSIPTLDLIE 993 (1321)
Q Consensus 924 ~~~~d~~~~~~~~~~--~~~~~~~~------ll~~~~~~~~~~SgKl~~L~elL~~~~--~~G~KVLIFSQ~~~tLdlLe 993 (1321)
....+.......+. ........ .+..........++|+..|.++|.... ..+.|+|||++++.+++.|.
T Consensus 570 -~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~ 648 (936)
T 4a2w_A 570 -YLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALK 648 (936)
T ss_dssp -HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHH
T ss_pred -HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHH
T ss_conf -9999999876325887899999989999999997640567789799999999999853589974999969799999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 99830999998763323797279437998999999999998188999821899524423334584567979999099990
Q 000740 994 FYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNP 1073 (1321)
Q Consensus 994 ~~L~~l~~~~~~~~~w~~Gi~y~rLDGsts~~eRq~lI~~Fn~~~n~~v~VlLISTkAGg~GLNLt~AnrVIi~D~~WNP 1073 (1321)
.+|...............|..+..++|+++..+|..++++|+++ +.+. +|++|+++++||||+.++.||+||++|||
T Consensus 649 ~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~--g~~~-VLVaT~~~~eGIDlp~v~~VI~yD~p~s~ 725 (936)
T 4a2w_A 649 KCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTS--KDNR-LLIATSVADEGIDIVQCNLVVLYEYSGNV 725 (936)
T ss_dssp HHHHHCSTTSSCCCEEC------------------------------CCS-EEEEECC------CCCCSEEEEESCCSCS
T ss_pred HHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCC--CCEE-EEEEECCHHCCCCCHHCCEEEEECCCCCH
T ss_conf 99863735366661699657876567888999999999986315--9815-99980726427760558989993899988
Q ss_pred CHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 023335351210399886899999818996999999999999999987053
Q 000740 1074 TYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDR 1124 (1321)
Q Consensus 1074 s~d~QAigRv~RiGQkK~V~VYRLia~gTIEEkI~~rq~~K~~La~~Vvd~ 1124 (1321)
..+.|++|| ||.+++.+|.|++.+|+|++.+ .+..|..+...++..
T Consensus 726 ~~~iQr~GR----GR~~~g~vi~Li~~~t~ee~~~-~~~~ke~~~~~~i~~ 771 (936)
T 4a2w_A 726 TKMIQVRGR----GRAAGSKCILVTSKTEVVENEK-CNRYKEEMMNKAVEK 771 (936)
T ss_dssp HHHHCC-----------CCCEEEEESCHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHCCC----CCCCCCEEEEEEECCCHHHHHH-HHHHHHHHHHHHHHH
T ss_conf 999996487----7888877999986988999999-988999999999998
No 10
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=1.00 E-value=1 Score=316.48 Aligned_cols=487 Identities=14% Similarity=0.126 Sum_probs=272.1
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCC-CCCEEEECCH-HHHHH
Q ss_conf 221308899999999999998554204689986619983899766999999999999821148-9742798164-57999
Q 000740 563 SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLG-LRTALIVTPV-NVLHN 640 (1321)
Q Consensus 563 ~~~LkphQ~eGV~fL~e~~~~sl~r~k~~~~g~GgILADeMGLGKTlQaIali~~ll~~~~~~-~k~vLIVvP~-sLi~n 640 (1321)
...|+|||.+++.+++ .+..+|++++||+|||++++..+...+.....+ .+++|||||. .|+.|
T Consensus 5 ~~~~~~~Q~~~i~~~~--------------~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q 70 (556)
T 4a2p_A 5 TKKARSYQIELAQPAI--------------NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQ 70 (556)
T ss_dssp ---CCHHHHHHHHHHH--------------TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHH
T ss_pred CCCCCHHHHHHHHHHH--------------CCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHH
T ss_conf 7787799999999997--------------49989998199971899999999999983745679869999288999999
Q ss_pred HHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHH-HCCCCCEE
Q ss_conf 99999987899998819999448525699999999850697999812200012346321113468998754-12799899
Q 000740 641 WKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA-LQDGPDIL 719 (1321)
Q Consensus 641 W~~Ei~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~ViIisY~~lr~ls~~~~~~d~~~~~~i~~l-L~~~~dlV 719 (1321)
|..++.+|++.. .+.+..+.+...... ....+....+|+|+|++.+....... .+ ....+++|
T Consensus 71 ~~~~~~~~~~~~--~~~~~~~~g~~~~~~--~~~~~~~~~~i~v~T~~~l~~~~~~~------------~~~~~~~~~~v 134 (556)
T 4a2p_A 71 QKNVFKHHFERQ--GYSVQGISGENFSNV--SVEKVIEDSDIIVVTPQILVNSFEDG------------TLTSLSIFTLM 134 (556)
T ss_dssp HHHHHHHHHGGG--TCCEEECCCC-------CHHHHHHHCSEEEECHHHHHHHHHSS------------SCCCSTTCSEE
T ss_pred HHHHHHHHHCCC--CCEEEEEECCCCCCH--HHHHHHCCCCEEEECHHHHHHHHHHC------------CCCCCCCCCEE
T ss_conf 999999872406--945999828987422--28986179999998899999999837------------50250307799
Q ss_pred EECCCCCCCCCCHHHHHHHHHC---------CCCEEEEEECCCCCCCHHHHH-------HHHHHHCCC----CCCCHHHH
Q ss_conf 9919842388501578998512---------355099983688988135678-------653210269----99995889
Q 000740 720 VCDEAHMIKNTRADTTQALKQV---------KCQRRIALTGSPLQNNLMEYY-------CMVDFVREG----FLGSSHEF 779 (1321)
Q Consensus 720 IiDEAH~IKN~~S~~skal~~L---------~t~~RilLTGTPiqNnL~EL~-------sLl~FL~p~----~Lgs~~eF 779 (1321)
|+||||++.+... ....+..+ ...++++|||||.+++..++. .+...+.+. .-.....+
T Consensus 135 ViDEah~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~ 213 (556)
T 4a2p_A 135 IFDECHNTTGNHP-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQEL 213 (556)
T ss_dssp EEETGGGCSTTSH-HHHHHHHHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHH
T ss_pred EEECCCCCCCCCH-HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCHHCCHHHH
T ss_conf 9988753588645-999999999853013688876999947856675166999999999999853984843332026778
Q ss_pred HHHCCCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 852058744677899--874789998887999999975876531255563119996299999618999999999999750
Q 000740 780 RNRFQNPIENGQHTN--STSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLH 857 (1321)
Q Consensus 780 ~~~f~~pI~~g~~~~--st~~dv~~~~~r~~~L~~~L~~fv~Rr~~~~v~~~LP~K~e~vv~v~LS~~Q~~LY~~~l~~~ 857 (1321)
...+..|........ ...............+...+..+.. ...+. .++ ...+. ...|..++...
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~-------~~~~g---~~~~~~~~~~~ 279 (556)
T 4a2p_A 214 QRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYS---VDTLS-QNS-------KKDFG---TQNYEHWIVVT 279 (556)
T ss_dssp HHHTCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHCC--------------------CCCS---SHHHHHHHHHH
T ss_pred HHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHH-CCC-------CCCCC---HHHHHHHHHHH
T ss_conf 742799853799827876775999999999999999988863---20121-033-------33443---35678999999
Q ss_pred CC---CCCCC---CHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCC
Q ss_conf 55---45321---1378874299999999999539201100001699997555578875335421103688765001002
Q 000740 858 GF---TNDRV---SNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQ 931 (1321)
Q Consensus 858 ~~---~~~~~---~~~~~~~~~l~~l~~LrkicnHP~Ll~~~~~~~~~~~ed~~d~~~d~~~d~~~~~~~~~~~~~d~~~ 931 (1321)
.. ..... ........+......++.. ++........ +.. . .... .. ........
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~--~~~---~--------~~~~--l~----~~~~~~~~ 339 (556)
T 4a2p_A 280 QRKCRLLQLEDKEEESRICRALFICTEHLRKY-NDALIISEDA--RII---D--------ALSY--LT----EFFTNVKN 339 (556)
T ss_dssp HHHHHHC---CHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHS--CHH---H--------HHHH--HH----HHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH--HHH---H--------HHHH--HH----HHHHHHHH
T ss_conf 99877640543201678999999999999999-9999886112--078---9--------9999--99----99999873
Q ss_pred CCCCCCCCHHHHHHH------HHHHCCCCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECCHHHHHHHHHHHHCCCCCC
Q ss_conf 789986311234454------321001122466704999999999731--199919999075326999999983099999
Q 000740 932 GKNDDGFFQKDWWND------LLHEHTYKELDYSGKMVLLLDILTMCS--NMGDKSLVFSQSIPTLDLIEFYLSKLPRPG 1003 (1321)
Q Consensus 932 ~~~~~~~~~~~~~~~------ll~~~~~~~~~~SgKl~~L~elL~~~~--~~G~KVLIFSQ~~~tLdlLe~~L~~l~~~~ 1003 (1321)
. ............ .+..........++|+..|.++|.... ..+.|+|||+++..+++.|..+|.......
T Consensus 340 ~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~ 417 (556)
T 4a2p_A 340 G--PYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILN 417 (556)
T ss_dssp S--CCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGG
T ss_pred C--CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCC
T ss_conf 3--79878999999876678876421037899996999999999998347998549999765899999999998587755
Q ss_pred CCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 87633237972794379989999999999981889998218995244233345845679799990999900233353512
Q 000740 1004 KQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRA 1083 (1321)
Q Consensus 1004 ~~~~~w~~Gi~y~rLDGsts~~eRq~lI~~Fn~~~n~~v~VlLISTkAGg~GLNLt~AnrVIi~D~~WNPs~d~QAigRv 1083 (1321)
........|..+..++|+++..+|+.++++|+++ +.+. +|++|+++++|||+++++.||+||++|||..+.|++||
T Consensus 418 ~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~--g~~~-vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR- 493 (556)
T 4a2p_A 418 YIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTS--KDNR-LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR- 493 (556)
T ss_dssp SCCEEC--------------------------------CC-EEEEEC-----------CEEEEETCCSCHHHHHHC----
T ss_pred EEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCC--CCEE-EEEECCCHHCCCCCHHCCEEEEECCCCCHHHHHHHCCC-
T ss_conf 0001478736776556566989999999984046--9658-99976704337775217889991899978899886387-
Q ss_pred HCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 10399886899999818996999999999999999987053
Q 000740 1084 WRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDR 1124 (1321)
Q Consensus 1084 ~RiGQkK~V~VYRLia~gTIEEkI~~rq~~K~~La~~Vvd~ 1124 (1321)
|+.+++.+|.|++.+++|++ +..+..|..+...++..
T Consensus 494 ---gR~~~g~~~~l~~~~~~~~~-~~~~~~k~~~~~~~i~~ 530 (556)
T 4a2p_A 494 ---GRAAGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVEK 530 (556)
T ss_dssp --------CCEEEEESCHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred ---CCCCCCEEEEEEECCCHHHH-HHHHHHHHHHHHHHHHH
T ss_conf ---87888418999827636777-77557999999999997
Done!