Query 000742
Match_columns 1313
No_of_seqs 1358 out of 7662
Neff 9.6
Searched_HMMs 46136
Date Mon Apr 1 22:57:31 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000742.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000742hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 2.9E-34 6.3E-39 316.2 23.0 358 5-450 129-486 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 3.1E-34 6.6E-39 316.0 22.7 389 8-491 98-486 (966)
3 PLN00113 leucine-rich repeat r 100.0 1.9E-29 4.1E-34 335.7 6.3 204 1059-1291 381-585 (968)
4 PLN00113 leucine-rich repeat r 100.0 3E-29 6.4E-34 333.9 5.8 394 832-1291 166-561 (968)
5 TIGR00990 3a0801s09 mitochondr 99.9 3.2E-25 6.9E-30 278.2 38.5 382 5-452 140-574 (615)
6 KOG1130 Predicted G-alpha GTPa 99.9 6.3E-25 1.4E-29 232.2 23.7 345 33-471 22-366 (639)
7 KOG1130 Predicted G-alpha GTPa 99.9 3.3E-24 7.2E-29 226.7 25.8 329 5-437 30-372 (639)
8 TIGR00990 3a0801s09 mitochondr 99.9 1.8E-23 4E-28 262.4 36.3 397 27-493 126-574 (615)
9 KOG4194 Membrane glycoprotein 99.9 1.2E-27 2.5E-32 264.3 -2.3 383 833-1278 81-466 (873)
10 cd00116 LRR_RI Leucine-rich re 99.9 1.6E-23 3.4E-28 242.7 30.9 291 835-1162 3-297 (319)
11 KOG4194 Membrane glycoprotein 99.9 4.1E-27 8.9E-32 260.0 -0.7 355 830-1250 102-466 (873)
12 cd00116 LRR_RI Leucine-rich re 99.9 2.7E-23 5.9E-28 240.6 31.1 308 811-1126 7-318 (319)
13 PRK11447 cellulose synthase su 99.9 6.3E-23 1.4E-27 274.0 38.8 430 5-486 282-736 (1157)
14 KOG1909 Ran GTPase-activating 99.9 8.3E-24 1.8E-28 222.5 18.5 328 830-1161 30-375 (382)
15 TIGR02917 PEP_TPR_lipo putativ 99.9 1.8E-21 4E-26 259.9 39.3 409 5-486 444-896 (899)
16 KOG1909 Ran GTPase-activating 99.9 7.1E-23 1.5E-27 215.5 17.7 297 843-1163 15-320 (382)
17 TIGR02917 PEP_TPR_lipo putativ 99.9 4.1E-21 8.9E-26 256.6 39.7 380 4-449 409-799 (899)
18 KOG0547 Translocase of outer m 99.9 8.8E-21 1.9E-25 206.1 32.7 393 4-452 127-569 (606)
19 PRK11447 cellulose synthase su 99.9 1.1E-20 2.4E-25 252.5 40.0 395 33-490 274-700 (1157)
20 KOG2002 TPR-containing nuclear 99.9 1.2E-19 2.5E-24 213.3 39.0 387 8-470 146-540 (1018)
21 KOG2002 TPR-containing nuclear 99.9 2.6E-19 5.7E-24 210.4 41.4 412 6-472 250-728 (1018)
22 PRK15174 Vi polysaccharide exp 99.9 1.1E-20 2.4E-25 235.9 30.8 327 4-452 54-384 (656)
23 KOG1840 Kinesin light chain [C 99.9 5.8E-19 1.3E-23 204.9 42.0 314 74-454 163-484 (508)
24 KOG0444 Cytoskeletal regulator 99.9 2.8E-24 6.1E-29 238.4 -6.2 271 917-1263 103-373 (1255)
25 KOG1840 Kinesin light chain [C 99.9 3.1E-18 6.8E-23 198.8 42.3 282 162-494 195-483 (508)
26 KOG0547 Translocase of outer m 99.9 1.3E-18 2.9E-23 189.4 34.2 406 26-494 113-570 (606)
27 KOG0444 Cytoskeletal regulator 99.8 8.4E-23 1.8E-27 226.8 -2.7 342 858-1266 7-353 (1255)
28 KOG0624 dsRNA-activated protei 99.8 2.6E-18 5.5E-23 178.7 30.3 406 20-526 30-472 (504)
29 KOG1126 DNA-binding cell divis 99.8 1.8E-19 4E-24 205.0 19.7 307 29-455 318-626 (638)
30 PRK15174 Vi polysaccharide exp 99.8 2E-18 4.2E-23 215.8 30.3 294 4-413 88-385 (656)
31 KOG2003 TPR repeat-containing 99.8 3.4E-19 7.3E-24 190.6 19.8 376 7-448 216-654 (840)
32 PRK10049 pgaA outer membrane p 99.8 9.5E-18 2.1E-22 214.3 33.3 410 4-489 27-455 (765)
33 PRK11788 tetratricopeptide rep 99.8 4.8E-17 1E-21 194.1 33.8 211 28-280 35-245 (389)
34 PRK10049 pgaA outer membrane p 99.8 5.2E-17 1.1E-21 207.6 32.9 390 4-450 61-457 (765)
35 KOG1126 DNA-binding cell divis 99.8 8E-18 1.7E-22 191.8 22.0 291 6-412 333-623 (638)
36 KOG0548 Molecular co-chaperone 99.8 1.9E-15 4.2E-20 168.3 37.3 378 5-450 15-456 (539)
37 KOG0618 Serine/threonine phosp 99.8 8.2E-20 1.8E-24 214.2 0.6 368 833-1263 24-487 (1081)
38 KOG1155 Anaphase-promoting com 99.8 1.1E-15 2.3E-20 166.1 32.0 202 213-449 334-536 (559)
39 KOG0472 Leucine-rich repeat pr 99.8 4E-20 8.7E-25 196.7 -2.3 126 1119-1266 416-542 (565)
40 PRK11788 tetratricopeptide rep 99.7 2.9E-16 6.3E-21 187.4 27.9 235 4-281 47-281 (389)
41 KOG2003 TPR repeat-containing 99.7 1E-15 2.2E-20 164.3 27.9 382 4-450 249-690 (840)
42 KOG1155 Anaphase-promoting com 99.7 7.1E-16 1.5E-20 167.5 25.0 260 6-312 241-529 (559)
43 KOG1173 Anaphase-promoting com 99.7 1.3E-15 2.9E-20 169.9 27.8 393 4-450 28-519 (611)
44 KOG1941 Acetylcholine receptor 99.7 1.5E-14 3.3E-19 152.0 33.3 345 31-451 9-362 (518)
45 KOG0618 Serine/threonine phosp 99.7 5.4E-19 1.2E-23 207.4 -0.2 417 758-1268 85-516 (1081)
46 KOG4308 LRR-containing protein 99.7 8.5E-18 1.8E-22 197.1 9.3 377 833-1266 90-474 (478)
47 PRK09782 bacteriophage N4 rece 99.7 2.6E-15 5.7E-20 191.2 29.8 330 6-453 356-710 (987)
48 KOG1941 Acetylcholine receptor 99.7 4.9E-14 1.1E-18 148.3 33.3 337 68-476 6-347 (518)
49 KOG2076 RNA polymerase III tra 99.7 3.4E-14 7.3E-19 167.1 34.0 351 27-447 138-510 (895)
50 KOG4308 LRR-containing protein 99.7 2.9E-17 6.4E-22 192.6 8.6 404 845-1281 39-461 (478)
51 PRK09782 bacteriophage N4 rece 99.7 3.8E-15 8.2E-20 189.7 25.2 221 6-281 452-675 (987)
52 KOG0472 Leucine-rich repeat pr 99.7 2.8E-18 6.1E-23 182.7 -4.2 177 1030-1241 363-541 (565)
53 PRK15387 E3 ubiquitin-protein 99.7 1.7E-16 3.7E-21 194.3 10.1 269 890-1277 202-470 (788)
54 KOG1173 Anaphase-promoting com 99.7 2E-14 4.3E-19 160.7 24.7 276 29-411 245-520 (611)
55 KOG0548 Molecular co-chaperone 99.6 1.1E-13 2.4E-18 154.5 29.8 373 31-471 5-437 (539)
56 PRK14574 hmsH outer membrane p 99.6 1E-12 2.3E-17 164.2 41.3 423 4-487 46-510 (822)
57 KOG2076 RNA polymerase III tra 99.6 2.4E-13 5.2E-18 160.1 28.6 366 5-438 152-544 (895)
58 KOG4237 Extracellular matrix p 99.6 7.8E-17 1.7E-21 172.0 -0.5 382 833-1262 70-498 (498)
59 PRK04841 transcriptional regul 99.6 4.1E-12 8.9E-17 169.0 43.9 396 20-456 366-767 (903)
60 COG5238 RNA1 Ran GTPase-activa 99.6 1E-14 2.2E-19 148.1 14.0 293 843-1158 15-318 (388)
61 COG5238 RNA1 Ran GTPase-activa 99.6 1.7E-14 3.7E-19 146.5 15.2 240 916-1159 29-288 (388)
62 KOG0550 Molecular chaperone (D 99.6 9.1E-14 2E-18 149.5 21.3 368 25-491 46-425 (486)
63 PRK12370 invasion protein regu 99.6 1.6E-13 3.5E-18 169.2 25.8 243 5-301 274-525 (553)
64 PF13429 TPR_15: Tetratricopep 99.6 1E-14 2.3E-19 164.6 13.9 266 33-450 13-278 (280)
65 PRK15387 E3 ubiquitin-protein 99.6 2.2E-15 4.7E-20 184.7 8.9 260 858-1216 201-460 (788)
66 PLN03218 maturation of RBCL 1; 99.6 4.8E-12 1.1E-16 162.8 38.8 386 5-449 383-783 (1060)
67 TIGR00540 hemY_coli hemY prote 99.6 7E-13 1.5E-17 157.5 28.5 318 27-454 83-404 (409)
68 KOG4162 Predicted calmodulin-b 99.6 4.4E-12 9.5E-17 147.1 33.2 435 5-494 336-787 (799)
69 PRK12370 invasion protein regu 99.6 6.5E-13 1.4E-17 163.8 27.5 207 24-280 254-472 (553)
70 KOG4237 Extracellular matrix p 99.6 3.7E-16 8.1E-21 166.9 -1.2 365 858-1273 67-485 (498)
71 KOG1156 N-terminal acetyltrans 99.5 3.2E-11 7E-16 137.3 37.4 447 4-517 19-490 (700)
72 TIGR02521 type_IV_pilW type IV 99.5 3.6E-13 7.9E-18 147.8 21.6 205 25-278 28-232 (234)
73 cd05804 StaR_like StaR_like; a 99.5 4.6E-12 9.9E-17 149.1 32.3 348 22-465 2-352 (355)
74 KOG0624 dsRNA-activated protei 99.5 5.3E-13 1.1E-17 139.6 21.0 312 5-411 51-372 (504)
75 PRK15370 E3 ubiquitin-protein 99.5 4.7E-15 1E-19 183.4 7.0 194 1003-1275 242-438 (754)
76 PLN03210 Resistant to P. syrin 99.5 6.2E-15 1.3E-19 196.3 7.4 34 1229-1262 870-903 (1153)
77 PRK14574 hmsH outer membrane p 99.5 8.5E-12 1.8E-16 156.2 34.3 196 28-275 34-229 (822)
78 PLN03081 pentatricopeptide (PP 99.5 1.6E-12 3.5E-17 166.2 28.3 420 5-488 100-555 (697)
79 PRK04841 transcriptional regul 99.5 9.5E-11 2.1E-15 156.0 46.0 422 24-490 337-760 (903)
80 KOG1129 TPR repeat-containing 99.5 5.2E-13 1.1E-17 138.8 18.7 271 36-452 187-461 (478)
81 COG3063 PilF Tfp pilus assembl 99.5 2.9E-13 6.2E-18 135.7 16.1 171 67-280 34-204 (250)
82 PRK11189 lipoprotein NlpI; Pro 99.5 9.7E-13 2.1E-17 148.6 22.5 225 6-280 40-267 (296)
83 COG3063 PilF Tfp pilus assembl 99.5 6.6E-13 1.4E-17 133.1 17.7 210 24-282 31-240 (250)
84 PRK11189 lipoprotein NlpI; Pro 99.5 1.4E-12 2.9E-17 147.4 22.4 229 80-410 38-266 (296)
85 KOG1129 TPR repeat-containing 99.5 7.2E-14 1.6E-18 145.1 10.7 207 25-280 220-426 (478)
86 PRK10747 putative protoheme IX 99.5 1.3E-11 2.8E-16 145.8 30.6 306 27-451 83-392 (398)
87 TIGR02521 type_IV_pilW type IV 99.5 1.3E-12 2.8E-17 143.4 20.8 198 65-305 28-225 (234)
88 PLN03081 pentatricopeptide (PP 99.5 1E-11 2.2E-16 158.9 29.6 376 5-448 136-556 (697)
89 PRK15370 E3 ubiquitin-protein 99.5 1.1E-14 2.4E-19 180.0 1.4 229 918-1214 200-428 (754)
90 KOG0550 Molecular chaperone (D 99.5 3E-12 6.5E-17 138.0 19.3 276 5-314 62-352 (486)
91 COG2956 Predicted N-acetylgluc 99.5 3.4E-11 7.3E-16 126.1 26.1 234 6-282 49-282 (389)
92 PLN03218 maturation of RBCL 1; 99.5 4.3E-11 9.3E-16 154.2 33.1 332 6-409 451-783 (1060)
93 KOG2376 Signal recognition par 99.4 2.9E-09 6.4E-14 120.4 43.0 430 3-491 23-488 (652)
94 KOG0495 HAT repeat protein [RN 99.4 3.1E-11 6.6E-16 136.6 26.0 351 6-449 530-880 (913)
95 PF13429 TPR_15: Tetratricopep 99.4 3.8E-13 8.2E-18 151.9 11.2 256 4-310 20-275 (280)
96 PLN03210 Resistant to P. syrin 99.4 1.7E-13 3.6E-18 182.7 8.7 34 1059-1096 779-812 (1153)
97 COG2956 Predicted N-acetylgluc 99.4 7.4E-11 1.6E-15 123.5 26.2 271 33-448 40-310 (389)
98 KOG1127 TPR repeat-containing 99.4 4.9E-10 1.1E-14 132.8 35.6 410 4-455 574-1073(1238)
99 PLN03077 Protein ECB2; Provisi 99.4 7.9E-11 1.7E-15 154.5 32.9 377 5-445 266-650 (857)
100 KOG1125 TPR repeat-containing 99.4 2.5E-12 5.5E-17 145.0 15.8 231 4-281 297-530 (579)
101 TIGR00540 hemY_coli hemY prote 99.4 4.8E-11 1.1E-15 141.8 27.9 309 4-414 96-404 (409)
102 KOG1174 Anaphase-promoting com 99.4 1.5E-10 3.3E-15 124.5 28.3 300 72-450 200-501 (564)
103 KOG1125 TPR repeat-containing 99.4 7.8E-12 1.7E-16 141.1 18.5 270 32-440 289-562 (579)
104 KOG4162 Predicted calmodulin-b 99.4 3.6E-10 7.8E-15 131.5 32.4 379 28-474 323-732 (799)
105 KOG4341 F-box protein containi 99.4 8.6E-13 1.9E-17 142.9 9.7 299 833-1163 141-447 (483)
106 KOG1127 TPR repeat-containing 99.4 3.5E-10 7.7E-15 134.0 31.3 388 6-451 472-881 (1238)
107 PLN03077 Protein ECB2; Provisi 99.4 2.6E-10 5.6E-15 149.7 33.7 404 5-487 235-651 (857)
108 KOG0495 HAT repeat protein [RN 99.4 1.6E-09 3.5E-14 122.9 34.7 244 168-456 586-853 (913)
109 KOG4341 F-box protein containi 99.4 9.1E-13 2E-17 142.7 8.5 283 916-1278 163-453 (483)
110 KOG1174 Anaphase-promoting com 99.4 1.4E-09 3.1E-14 117.2 32.4 251 163-470 229-481 (564)
111 KOG3785 Uncharacterized conser 99.3 6E-09 1.3E-13 110.0 34.4 386 6-468 36-469 (557)
112 KOG3617 WD40 and TPR repeat-co 99.3 2.2E-08 4.7E-13 116.1 39.8 149 12-196 789-942 (1416)
113 TIGR03302 OM_YfiO outer membra 99.3 1.8E-10 3.9E-15 126.6 21.5 194 163-448 30-231 (235)
114 PRK10747 putative protoheme IX 99.3 1.2E-09 2.6E-14 129.2 29.6 291 5-410 97-391 (398)
115 cd05804 StaR_like StaR_like; a 99.3 1.2E-09 2.6E-14 128.5 29.1 323 6-422 20-349 (355)
116 PF14938 SNAP: Soluble NSF att 99.3 3.7E-10 8.1E-15 126.6 23.4 234 25-279 32-267 (282)
117 KOG2120 SCF ubiquitin ligase, 99.3 1.2E-11 2.7E-16 127.7 9.6 162 917-1097 185-349 (419)
118 KOG1156 N-terminal acetyltrans 99.3 4.3E-08 9.2E-13 112.4 37.5 378 6-445 55-464 (700)
119 TIGR03302 OM_YfiO outer membra 99.2 2.6E-10 5.7E-15 125.3 19.1 114 26-146 31-144 (235)
120 KOG2300 Uncharacterized conser 99.2 1.6E-06 3.4E-11 96.1 46.5 441 7-475 24-540 (629)
121 PF14938 SNAP: Soluble NSF att 99.2 9.3E-10 2E-14 123.4 22.7 229 206-487 32-263 (282)
122 KOG1915 Cell cycle control pro 99.2 7.3E-07 1.6E-11 98.3 42.8 354 3-408 84-499 (677)
123 KOG4340 Uncharacterized conser 99.2 7.2E-09 1.6E-13 107.1 24.4 221 5-274 23-266 (459)
124 PF12569 NARP1: NMDA receptor- 99.2 4.9E-08 1.1E-12 116.1 33.7 257 4-307 16-286 (517)
125 KOG3617 WD40 and TPR repeat-co 99.2 2.4E-07 5.2E-12 107.7 37.3 412 5-447 813-1357(1416)
126 KOG3207 Beta-tubulin folding c 99.1 6.6E-12 1.4E-16 136.9 0.5 241 893-1158 97-341 (505)
127 PLN02789 farnesyltranstransfer 99.1 2.2E-09 4.8E-14 120.6 19.8 205 5-262 50-268 (320)
128 KOG3207 Beta-tubulin folding c 99.1 1.6E-11 3.4E-16 134.0 2.3 241 863-1130 98-341 (505)
129 KOG2120 SCF ubiquitin ligase, 99.1 1.4E-10 3E-15 120.1 8.8 236 893-1161 140-380 (419)
130 PLN02789 farnesyltranstransfer 99.1 5.8E-09 1.3E-13 117.3 20.6 199 31-280 40-252 (320)
131 KOG2376 Signal recognition par 99.1 1.3E-06 2.7E-11 99.6 38.5 394 5-450 59-488 (652)
132 PRK14720 transcript cleavage f 99.1 1.1E-08 2.4E-13 126.3 24.4 258 24-450 27-284 (906)
133 KOG2300 Uncharacterized conser 99.0 2.5E-05 5.4E-10 86.9 44.0 427 26-479 5-504 (629)
134 COG3071 HemY Uncharacterized e 99.0 2.5E-07 5.4E-12 100.9 26.7 312 27-455 83-396 (400)
135 PRK15359 type III secretion sy 99.0 5.5E-09 1.2E-13 103.9 13.1 117 137-286 13-129 (144)
136 KOG3785 Uncharacterized conser 99.0 2E-07 4.3E-12 98.8 24.9 345 38-446 32-419 (557)
137 PRK10370 formate-dependent nit 98.9 1.3E-08 2.7E-13 107.0 15.0 125 131-285 53-180 (198)
138 KOG2047 mRNA splicing factor [ 98.9 7E-06 1.5E-10 94.2 37.1 282 178-494 359-656 (835)
139 KOG0617 Ras suppressor protein 98.9 1.4E-11 3.1E-16 116.8 -6.6 151 1058-1241 33-186 (264)
140 PRK15359 type III secretion sy 98.9 8.9E-09 1.9E-13 102.4 12.3 126 88-261 13-138 (144)
141 KOG1915 Cell cycle control pro 98.9 2.1E-05 4.6E-10 87.1 37.9 418 1-472 150-608 (677)
142 PF13525 YfiO: Outer membrane 98.9 2.3E-07 5E-12 98.4 22.2 191 27-268 4-197 (203)
143 PF12569 NARP1: NMDA receptor- 98.9 5.6E-06 1.2E-10 98.8 36.0 245 4-286 50-342 (517)
144 KOG1259 Nischarin, modulator o 98.9 7E-10 1.5E-14 114.7 2.5 132 1029-1218 284-416 (490)
145 KOG2047 mRNA splicing factor [ 98.9 2.9E-05 6.4E-10 89.2 38.4 389 25-452 245-722 (835)
146 PRK15179 Vi polysaccharide bio 98.9 1E-07 2.2E-12 117.8 20.7 160 80-281 61-220 (694)
147 KOG1128 Uncharacterized conser 98.8 4.4E-07 9.5E-12 105.8 24.0 188 31-284 401-588 (777)
148 KOG0617 Ras suppressor protein 98.8 3E-11 6.6E-16 114.6 -8.1 155 916-1099 32-186 (264)
149 PRK14720 transcript cleavage f 98.8 8.6E-08 1.9E-12 118.7 19.3 222 160-476 25-273 (906)
150 PF10345 Cohesin_load: Cohesin 98.8 8.9E-05 1.9E-09 92.8 46.2 415 6-471 35-546 (608)
151 PRK10370 formate-dependent nit 98.8 7.4E-08 1.6E-12 101.3 15.3 152 34-241 22-176 (198)
152 PF13424 TPR_12: Tetratricopep 98.8 3.4E-08 7.4E-13 87.0 10.8 76 377-452 2-78 (78)
153 COG3071 HemY Uncharacterized e 98.8 2.7E-06 5.8E-11 93.1 27.0 295 3-410 95-391 (400)
154 PF10345 Cohesin_load: Cohesin 98.8 0.0005 1.1E-08 86.1 50.8 463 4-491 72-607 (608)
155 KOG1585 Protein required for f 98.8 1.7E-06 3.8E-11 87.7 22.7 243 5-272 6-250 (308)
156 KOG1586 Protein required for f 98.8 3.8E-06 8.2E-11 84.8 24.8 208 37-286 23-232 (288)
157 KOG0553 TPR repeat-containing 98.8 2.7E-08 5.9E-13 104.8 10.1 105 164-283 79-183 (304)
158 PRK15179 Vi polysaccharide bio 98.8 1.9E-07 4.2E-12 115.4 18.8 169 30-240 51-219 (694)
159 PF13424 TPR_12: Tetratricopep 98.8 6E-08 1.3E-12 85.4 10.3 77 162-240 1-77 (78)
160 PRK15363 pathogenicity island 98.8 1.5E-07 3.2E-12 91.4 13.7 104 163-281 32-135 (157)
161 PF14580 LRR_9: Leucine-rich r 98.7 2E-09 4.4E-14 108.7 0.8 115 1024-1158 14-128 (175)
162 KOG1259 Nischarin, modulator o 98.7 1.7E-09 3.7E-14 111.9 0.2 107 1084-1218 282-391 (490)
163 PF13525 YfiO: Outer membrane 98.7 1.5E-06 3.3E-11 92.2 22.6 184 165-440 4-198 (203)
164 KOG3616 Selective LIM binding 98.7 0.00012 2.6E-09 84.7 38.3 222 167-445 662-907 (1636)
165 KOG1585 Protein required for f 98.7 3.4E-06 7.4E-11 85.6 23.1 192 66-279 29-220 (308)
166 PRK10866 outer membrane biogen 98.7 2.5E-06 5.4E-11 92.7 23.4 187 166-444 32-236 (243)
167 PRK10866 outer membrane biogen 98.7 4.7E-07 1E-11 98.3 17.7 194 28-234 32-237 (243)
168 COG5010 TadD Flp pilus assembl 98.7 2E-07 4.3E-12 96.7 13.7 179 10-236 51-229 (257)
169 KOG3060 Uncharacterized conser 98.7 3E-06 6.4E-11 87.0 21.8 196 41-281 25-223 (289)
170 TIGR02552 LcrH_SycD type III s 98.7 1.5E-07 3.3E-12 93.2 12.6 108 162-284 13-120 (135)
171 KOG0553 TPR repeat-containing 98.7 2.6E-07 5.6E-12 97.6 14.4 121 108-266 80-200 (304)
172 KOG3616 Selective LIM binding 98.7 2.2E-05 4.8E-10 90.5 30.0 310 30-410 663-1025(1636)
173 PF14580 LRR_9: Leucine-rich r 98.7 9.9E-09 2.1E-13 103.7 2.7 126 891-1036 21-147 (175)
174 KOG1128 Uncharacterized conser 98.6 6.4E-07 1.4E-11 104.5 14.6 198 31-286 427-624 (777)
175 KOG3060 Uncharacterized conser 98.6 9.8E-06 2.1E-10 83.2 20.6 179 30-259 54-235 (289)
176 KOG2982 Uncharacterized conser 98.6 7.1E-08 1.5E-12 100.4 5.4 195 916-1158 70-264 (418)
177 COG5010 TadD Flp pilus assembl 98.5 2E-06 4.3E-11 89.4 14.8 162 67-274 66-227 (257)
178 CHL00033 ycf3 photosystem I as 98.5 1.1E-06 2.5E-11 90.5 13.2 135 6-152 13-148 (168)
179 PRK02603 photosystem I assembl 98.5 3.8E-06 8.3E-11 86.8 16.4 98 15-122 22-119 (172)
180 PRK15363 pathogenicity island 98.5 2.2E-06 4.8E-11 83.3 13.3 100 109-240 35-134 (157)
181 CHL00033 ycf3 photosystem I as 98.5 1.8E-06 3.9E-11 88.9 13.7 112 164-281 33-145 (168)
182 KOG1586 Protein required for f 98.5 6.8E-05 1.5E-09 76.0 23.9 205 179-457 27-232 (288)
183 TIGR02552 LcrH_SycD type III s 98.5 1.1E-06 2.4E-11 87.0 11.0 112 13-147 4-115 (135)
184 PRK02603 photosystem I assembl 98.4 2.1E-06 4.6E-11 88.7 13.2 105 162-278 31-142 (172)
185 PLN03088 SGT1, suppressor of 98.4 1.3E-06 2.7E-11 101.2 12.0 101 169-284 5-105 (356)
186 PF12895 Apc3: Anaphase-promot 98.4 1.2E-06 2.6E-11 78.2 8.8 84 4-95 1-84 (84)
187 TIGR02795 tol_pal_ybgF tol-pal 98.4 2E-06 4.3E-11 83.0 10.9 108 166-282 2-109 (119)
188 PF12895 Apc3: Anaphase-promot 98.4 2.5E-06 5.3E-11 76.2 10.5 83 179-275 2-84 (84)
189 KOG2471 TPR repeat-containing 98.4 0.00018 3.9E-09 80.2 26.3 126 166-291 240-377 (696)
190 KOG4340 Uncharacterized conser 98.4 1.7E-05 3.6E-10 82.8 17.2 214 220-445 21-266 (459)
191 PF13414 TPR_11: TPR repeat; P 98.4 9.8E-07 2.1E-11 75.5 6.9 66 209-280 3-69 (69)
192 COG4785 NlpI Lipoprotein NlpI, 98.3 5.3E-05 1.1E-09 75.7 19.4 104 105-240 61-164 (297)
193 PF09976 TPR_21: Tetratricopep 98.3 1.5E-05 3.3E-10 79.7 16.2 100 164-276 46-145 (145)
194 KOG1947 Leucine rich repeat pr 98.3 1.5E-06 3.3E-11 107.1 10.1 250 853-1154 183-438 (482)
195 PF13414 TPR_11: TPR repeat; P 98.3 1.9E-06 4.1E-11 73.7 7.5 66 166-240 3-69 (69)
196 KOG0543 FKBP-type peptidyl-pro 98.3 1.2E-05 2.5E-10 89.1 14.5 145 112-279 211-356 (397)
197 KOG0532 Leucine-rich repeat (L 98.3 6.4E-08 1.4E-12 109.5 -3.0 195 832-1100 52-248 (722)
198 COG4783 Putative Zn-dependent 98.3 2.5E-05 5.3E-10 88.1 16.9 132 110-279 307-438 (484)
199 COG4105 ComL DNA uptake lipopr 98.3 5.3E-05 1.1E-09 79.4 18.1 192 28-232 34-227 (254)
200 cd00189 TPR Tetratricopeptide 98.3 3.3E-06 7.2E-11 77.1 8.5 98 168-280 2-99 (100)
201 COG4783 Putative Zn-dependent 98.2 1.2E-05 2.6E-10 90.6 14.0 88 210-303 307-394 (484)
202 PLN03088 SGT1, suppressor of 98.2 6.1E-06 1.3E-10 95.6 12.3 109 113-259 6-114 (356)
203 KOG1859 Leucine-rich repeat pr 98.2 2.7E-07 5.9E-12 107.0 0.7 159 858-1042 109-292 (1096)
204 KOG0543 FKBP-type peptidyl-pro 98.2 9.5E-06 2E-10 89.8 12.5 116 165-286 207-328 (397)
205 KOG0531 Protein phosphatase 1, 98.2 2E-07 4.3E-12 111.1 -1.2 267 917-1268 49-321 (414)
206 COG2909 MalT ATP-dependent tra 98.2 0.0047 1E-07 75.2 34.4 250 131-445 429-684 (894)
207 PF09976 TPR_21: Tetratricopep 98.2 5.7E-05 1.2E-09 75.5 16.0 124 39-193 22-145 (145)
208 KOG1859 Leucine-rich repeat pr 98.2 3.4E-07 7.4E-12 106.3 -0.2 207 916-1158 108-324 (1096)
209 PRK10803 tol-pal system protei 98.2 1.4E-05 3.1E-10 87.2 12.2 109 166-283 142-251 (263)
210 KOG0532 Leucine-rich repeat (L 98.2 8.5E-08 1.8E-12 108.6 -5.3 178 1031-1272 77-254 (722)
211 KOG1947 Leucine rich repeat pr 98.2 1.4E-05 3.1E-10 98.5 13.6 37 943-982 186-223 (482)
212 PF12688 TPR_5: Tetratrico pep 98.2 6.3E-05 1.4E-09 71.1 14.6 102 167-277 2-103 (120)
213 KOG4234 TPR repeat-containing 98.1 1.8E-05 4E-10 77.9 11.1 109 166-284 95-203 (271)
214 TIGR02795 tol_pal_ybgF tol-pal 98.1 1.6E-05 3.4E-10 76.6 10.7 104 29-147 3-106 (119)
215 COG4886 Leucine-rich repeat (L 98.1 1.7E-06 3.8E-11 103.1 4.5 176 945-1158 116-292 (394)
216 KOG1070 rRNA processing protei 98.1 0.00063 1.4E-08 85.2 26.0 185 65-290 1455-1641(1710)
217 KOG2471 TPR repeat-containing 98.1 0.00047 1E-08 77.1 22.4 161 36-221 214-381 (696)
218 KOG1070 rRNA processing protei 98.1 0.00054 1.2E-08 85.8 24.9 250 163-494 1455-1704(1710)
219 COG2909 MalT ATP-dependent tra 98.1 0.011 2.3E-07 72.1 35.0 236 166-454 415-652 (894)
220 KOG0531 Protein phosphatase 1, 98.1 2.3E-07 5E-12 110.5 -4.0 152 858-1043 49-200 (414)
221 COG4785 NlpI Lipoprotein NlpI, 98.1 0.00027 5.8E-09 70.9 17.8 206 23-279 60-267 (297)
222 COG4105 ComL DNA uptake lipopr 98.1 0.00068 1.5E-08 71.3 21.6 185 166-442 34-226 (254)
223 COG0457 NrfG FOG: TPR repeat [ 98.0 0.00068 1.5E-08 73.8 23.2 229 8-281 39-268 (291)
224 COG4886 Leucine-rich repeat (L 98.0 2E-06 4.4E-11 102.5 2.9 123 1006-1154 97-220 (394)
225 PRK10153 DNA-binding transcrip 98.0 4.7E-05 1E-09 91.8 14.4 142 109-284 339-488 (517)
226 PF04733 Coatomer_E: Coatomer 98.0 1.8E-05 4E-10 88.1 10.1 219 4-281 13-233 (290)
227 KOG2982 Uncharacterized conser 98.0 6.4E-06 1.4E-10 86.2 5.8 212 1031-1267 47-264 (418)
228 cd00189 TPR Tetratricopeptide 98.0 2.6E-05 5.6E-10 71.1 9.0 97 70-196 2-98 (100)
229 PF12688 TPR_5: Tetratrico pep 98.0 0.00015 3.2E-09 68.6 13.4 102 110-237 2-103 (120)
230 COG3898 Uncharacterized membra 97.9 0.027 5.8E-07 61.9 30.8 302 33-449 89-392 (531)
231 PRK15331 chaperone protein Sic 97.9 6.1E-05 1.3E-09 73.7 9.7 101 162-277 33-133 (165)
232 PF04733 Coatomer_E: Coatomer 97.9 0.00012 2.5E-09 81.8 13.2 253 77-448 10-264 (290)
233 PF13432 TPR_16: Tetratricopep 97.9 1.6E-05 3.4E-10 67.0 4.9 63 213-281 1-63 (65)
234 KOG3665 ZYG-1-like serine/thre 97.9 4.9E-05 1.1E-09 94.3 11.1 146 917-1077 122-269 (699)
235 PRK10803 tol-pal system protei 97.9 6.9E-05 1.5E-09 82.0 11.0 105 29-148 143-248 (263)
236 KOG4555 TPR repeat-containing 97.9 0.0005 1.1E-08 63.1 14.0 90 131-240 57-146 (175)
237 PRK10153 DNA-binding transcrip 97.9 0.00019 4E-09 86.7 15.0 142 22-198 333-485 (517)
238 COG0457 NrfG FOG: TPR repeat [ 97.9 0.01 2.2E-07 64.3 28.1 198 41-281 36-234 (291)
239 PLN03150 hypothetical protein; 97.8 1.9E-05 4.1E-10 98.6 5.8 107 919-1040 420-526 (623)
240 PF13432 TPR_16: Tetratricopep 97.8 5.2E-05 1.1E-09 63.8 6.6 62 170-240 1-62 (65)
241 KOG4555 TPR repeat-containing 97.8 0.00035 7.6E-09 64.1 11.9 104 168-282 45-148 (175)
242 KOG1464 COP9 signalosome, subu 97.8 0.0018 4E-08 67.0 18.4 244 5-263 40-286 (440)
243 KOG3665 ZYG-1-like serine/thre 97.8 7E-05 1.5E-09 92.9 9.6 149 858-1024 122-272 (699)
244 COG5159 RPN6 26S proteasome re 97.8 0.035 7.7E-07 58.3 27.3 227 33-282 8-239 (421)
245 KOG4648 Uncharacterized conser 97.7 8.6E-05 1.9E-09 79.0 7.7 99 170-283 101-199 (536)
246 PLN03150 hypothetical protein; 97.7 4.7E-05 1E-09 95.1 6.5 106 891-1013 420-526 (623)
247 COG1729 Uncharacterized protei 97.7 0.00018 3.8E-09 76.4 9.6 106 169-283 144-249 (262)
248 KOG4242 Predicted myosin-I-bin 97.7 2.1E-05 4.5E-10 87.8 2.8 321 821-1163 126-460 (553)
249 PF13855 LRR_8: Leucine rich r 97.7 3.1E-06 6.8E-11 70.1 -2.9 60 1202-1264 2-61 (61)
250 KOG2041 WD40 repeat protein [G 97.7 0.12 2.7E-06 60.7 32.4 104 29-143 693-822 (1189)
251 KOG1464 COP9 signalosome, subu 97.7 0.002 4.3E-08 66.7 16.5 225 41-286 40-268 (440)
252 KOG1550 Extracellular protein 97.7 0.0046 1E-07 76.2 23.2 292 43-450 227-539 (552)
253 PLN03098 LPA1 LOW PSII ACCUMUL 97.6 0.0004 8.6E-09 79.2 12.1 74 159-238 68-141 (453)
254 PRK15331 chaperone protein Sic 97.6 0.0012 2.7E-08 64.8 13.8 120 6-146 7-134 (165)
255 COG1729 Uncharacterized protei 97.6 0.00035 7.6E-09 74.2 10.4 103 31-148 144-246 (262)
256 KOG4579 Leucine-rich repeat (L 97.6 2.5E-05 5.3E-10 72.6 1.3 110 1003-1129 28-137 (177)
257 COG4235 Cytochrome c biogenesi 97.6 0.00057 1.2E-08 73.5 11.7 110 162-286 152-264 (287)
258 PF09295 ChAPs: ChAPs (Chs5p-A 97.6 0.00049 1.1E-08 79.2 12.1 111 131-274 183-293 (395)
259 KOG4648 Uncharacterized conser 97.6 5.8E-05 1.3E-09 80.3 4.1 102 212-319 100-201 (536)
260 PF13512 TPR_18: Tetratricopep 97.6 0.00066 1.4E-08 65.2 10.8 108 166-282 10-132 (142)
261 PF08631 SPO22: Meiosis protei 97.6 0.039 8.4E-07 61.8 26.8 142 129-280 5-152 (278)
262 PRK11906 transcriptional regul 97.5 0.0008 1.7E-08 76.8 13.0 126 130-282 271-405 (458)
263 COG4235 Cytochrome c biogenesi 97.5 0.0012 2.6E-08 71.1 13.6 122 64-217 152-273 (287)
264 COG3898 Uncharacterized membra 97.5 0.045 9.7E-07 60.3 25.2 29 381-409 363-392 (531)
265 KOG1463 26S proteasome regulat 97.5 0.042 9.2E-07 59.4 24.6 283 6-309 18-313 (411)
266 PRK11906 transcriptional regul 97.5 0.0013 2.8E-08 75.2 14.4 168 70-274 257-432 (458)
267 COG4700 Uncharacterized protei 97.5 0.0083 1.8E-07 59.1 17.5 165 73-281 61-225 (251)
268 KOG4234 TPR repeat-containing 97.5 0.0012 2.6E-08 65.4 12.0 105 69-198 96-200 (271)
269 KOG3081 Vesicle coat complex C 97.5 0.007 1.5E-07 63.4 18.1 159 210-447 109-268 (299)
270 PF13855 LRR_8: Leucine rich r 97.5 1.6E-05 3.4E-10 65.9 -1.1 59 918-984 2-60 (61)
271 PF09295 ChAPs: ChAPs (Chs5p-A 97.4 0.0013 2.9E-08 75.8 13.4 120 34-192 175-294 (395)
272 PLN03098 LPA1 LOW PSII ACCUMUL 97.4 0.0016 3.5E-08 74.3 13.6 69 204-278 70-141 (453)
273 PF10300 DUF3808: Protein of u 97.4 0.21 4.5E-06 60.2 32.5 164 179-452 201-379 (468)
274 KOG2610 Uncharacterized conser 97.4 0.17 3.7E-06 54.7 27.3 220 16-276 55-274 (491)
275 KOG2796 Uncharacterized conser 97.4 0.0091 2E-07 62.0 17.0 180 72-283 126-320 (366)
276 PF13512 TPR_18: Tetratricopep 97.4 0.0025 5.5E-08 61.2 12.2 113 29-148 11-130 (142)
277 PF13371 TPR_9: Tetratricopept 97.4 0.00032 7E-09 60.6 5.7 63 215-283 1-63 (73)
278 KOG4658 Apoptotic ATPase [Sign 97.3 0.00015 3.3E-09 92.4 4.6 128 859-1013 524-653 (889)
279 KOG2041 WD40 repeat protein [G 97.3 0.6 1.3E-05 55.3 33.8 68 423-494 1024-1093(1189)
280 COG5159 RPN6 26S proteasome re 97.3 0.057 1.2E-06 56.9 22.1 233 171-456 8-242 (421)
281 KOG1463 26S proteasome regulat 97.3 0.12 2.6E-06 56.1 25.0 260 172-483 10-271 (411)
282 KOG1550 Extracellular protein 97.3 0.041 8.9E-07 67.9 25.2 155 84-279 228-394 (552)
283 KOG4658 Apoptotic ATPase [Sign 97.3 0.00016 3.5E-09 92.2 3.9 207 918-1158 524-732 (889)
284 COG4700 Uncharacterized protei 97.3 0.044 9.5E-07 54.2 19.0 162 35-240 63-224 (251)
285 KOG4242 Predicted myosin-I-bin 97.2 0.00012 2.6E-09 81.9 1.8 115 891-1014 137-253 (553)
286 PF13371 TPR_9: Tetratricopept 97.2 0.00099 2.1E-08 57.5 7.0 60 172-240 1-60 (73)
287 KOG0985 Vesicle coat protein c 97.2 1.1 2.4E-05 55.6 37.4 75 29-115 1105-1179(1666)
288 PF12968 DUF3856: Domain of Un 97.2 0.038 8.2E-07 50.3 16.2 125 108-241 6-132 (144)
289 PF14559 TPR_19: Tetratricopep 97.2 0.00071 1.5E-08 57.4 5.4 55 177-240 2-56 (68)
290 KOG3081 Vesicle coat complex C 97.2 0.026 5.6E-07 59.3 17.4 93 173-282 144-240 (299)
291 KOG3783 Uncharacterized conser 97.1 0.13 2.7E-06 59.8 24.4 255 9-283 250-525 (546)
292 PF14559 TPR_19: Tetratricopep 97.1 0.00042 9.1E-09 58.9 3.6 57 220-282 2-58 (68)
293 KOG2796 Uncharacterized conser 97.1 0.012 2.5E-07 61.2 14.3 143 161-311 172-314 (366)
294 KOG4579 Leucine-rich repeat (L 97.1 0.00016 3.5E-09 67.4 0.6 85 1117-1216 29-115 (177)
295 PF12968 DUF3856: Domain of Un 97.1 0.054 1.2E-06 49.3 16.3 105 349-453 18-133 (144)
296 PF08631 SPO22: Meiosis protei 97.1 0.35 7.6E-06 54.2 27.3 93 177-270 4-105 (278)
297 KOG1644 U2-associated snRNP A' 97.0 0.00067 1.5E-08 67.9 4.6 87 1058-1158 42-128 (233)
298 KOG1644 U2-associated snRNP A' 97.0 0.00028 6.1E-09 70.5 1.7 80 892-984 45-124 (233)
299 PF12862 Apc5: Anaphase-promot 97.0 0.0083 1.8E-07 54.5 10.9 79 391-469 9-90 (94)
300 PF10602 RPN7: 26S proteasome 97.0 0.014 3.1E-07 59.9 13.9 128 7-146 15-142 (177)
301 KOG0985 Vesicle coat protein c 96.9 0.67 1.5E-05 57.3 28.8 241 166-441 1104-1375(1666)
302 PF13176 TPR_7: Tetratricopept 96.9 0.0021 4.5E-08 46.4 5.2 33 422-454 1-33 (36)
303 KOG2053 Mitochondrial inherita 96.9 1.9 4.2E-05 53.3 43.3 90 4-102 21-110 (932)
304 KOG0551 Hsp90 co-chaperone CNS 96.9 0.02 4.3E-07 61.8 14.3 108 164-282 79-186 (390)
305 KOG1839 Uncharacterized protei 96.9 0.056 1.2E-06 69.1 20.5 182 131-321 946-1130(1236)
306 PF04184 ST7: ST7 protein; In 96.9 0.049 1.1E-06 62.5 18.0 213 35-286 175-422 (539)
307 PF10602 RPN7: 26S proteasome 96.9 0.029 6.2E-07 57.7 15.1 109 164-278 34-142 (177)
308 PF12799 LRR_4: Leucine Rich r 96.9 0.0012 2.6E-08 50.0 3.5 36 918-958 2-37 (44)
309 PF12799 LRR_4: Leucine Rich r 96.8 0.00096 2.1E-08 50.5 2.8 38 1116-1158 2-39 (44)
310 KOG4642 Chaperone-dependent E3 96.8 0.0035 7.6E-08 64.3 7.6 103 167-284 11-113 (284)
311 COG2976 Uncharacterized protei 96.8 0.25 5.5E-06 49.9 20.3 101 166-279 89-189 (207)
312 KOG2123 Uncharacterized conser 96.8 0.00043 9.3E-09 72.3 0.8 104 1029-1149 19-123 (388)
313 KOG0545 Aryl-hydrocarbon recep 96.7 0.018 3.9E-07 59.3 11.7 113 166-284 178-299 (329)
314 KOG1839 Uncharacterized protei 96.7 0.025 5.5E-07 72.0 15.6 198 68-283 932-1133(1236)
315 KOG2053 Mitochondrial inherita 96.7 0.61 1.3E-05 57.4 26.2 188 39-275 20-216 (932)
316 KOG3783 Uncharacterized conser 96.7 0.36 7.8E-06 56.3 23.2 272 170-452 235-523 (546)
317 PF06552 TOM20_plant: Plant sp 96.7 0.022 4.8E-07 56.6 11.6 83 7-98 6-102 (186)
318 COG0790 FOG: TPR repeat, SEL1 96.6 0.12 2.6E-06 58.6 19.8 171 5-223 54-236 (292)
319 KOG2123 Uncharacterized conser 96.6 0.00063 1.4E-08 71.1 0.7 103 917-1035 19-123 (388)
320 PF10300 DUF3808: Protein of u 96.6 0.058 1.3E-06 65.0 17.3 126 131-281 247-379 (468)
321 PF09986 DUF2225: Uncharacteri 96.6 0.019 4E-07 60.9 11.4 97 354-450 91-195 (214)
322 KOG4322 Anaphase-promoting com 96.6 0.49 1.1E-05 53.3 22.4 197 164-408 271-470 (482)
323 PF07079 DUF1347: Protein of u 96.6 2 4.4E-05 49.0 36.3 52 387-445 469-520 (549)
324 PF04184 ST7: ST7 protein; In 96.5 0.19 4E-06 58.0 19.5 216 73-318 173-420 (539)
325 COG2976 Uncharacterized protei 96.5 0.42 9.2E-06 48.3 19.4 99 111-239 91-189 (207)
326 PF13176 TPR_7: Tetratricopept 96.5 0.0057 1.2E-07 44.1 4.8 33 382-414 1-33 (36)
327 PF12862 Apc5: Anaphase-promot 96.4 0.038 8.3E-07 50.2 11.1 81 38-119 8-91 (94)
328 PF09986 DUF2225: Uncharacteri 96.4 0.04 8.7E-07 58.4 12.4 101 179-281 90-197 (214)
329 PF00515 TPR_1: Tetratricopept 96.3 0.0051 1.1E-07 43.7 3.9 30 381-410 2-31 (34)
330 PF06552 TOM20_plant: Plant sp 96.3 0.091 2E-06 52.4 13.4 90 182-280 7-111 (186)
331 KOG0551 Hsp90 co-chaperone CNS 96.3 0.3 6.6E-06 53.1 18.0 110 203-314 75-184 (390)
332 PF00515 TPR_1: Tetratricopept 96.3 0.0056 1.2E-07 43.5 3.7 30 251-280 3-32 (34)
333 PF02259 FAT: FAT domain; Int 96.2 2.1 4.6E-05 49.9 27.7 127 340-474 146-306 (352)
334 KOG4642 Chaperone-dependent E3 96.2 0.031 6.6E-07 57.7 9.9 102 343-456 13-114 (284)
335 smart00368 LRR_RI Leucine rich 96.2 0.0065 1.4E-07 40.8 3.3 27 1251-1277 1-27 (28)
336 PF11817 Foie-gras_1: Foie gra 96.1 1.4 3.1E-05 48.2 23.2 202 70-275 12-244 (247)
337 PF07719 TPR_2: Tetratricopept 96.0 0.009 1.9E-07 42.4 3.9 30 381-410 2-31 (34)
338 PRK15386 type III secretion pr 96.0 0.0051 1.1E-07 70.4 3.7 55 1026-1096 49-104 (426)
339 smart00368 LRR_RI Leucine rich 95.9 0.011 2.3E-07 39.7 3.5 26 917-942 2-27 (28)
340 PF07719 TPR_2: Tetratricopept 95.8 0.012 2.6E-07 41.7 3.8 28 211-238 3-30 (34)
341 PF02259 FAT: FAT domain; Int 95.8 5.4 0.00012 46.5 28.6 118 164-286 144-295 (352)
342 PRK15386 type III secretion pr 95.8 0.0078 1.7E-07 68.9 3.8 32 916-955 51-82 (426)
343 KOG0890 Protein kinase of the 95.7 1.6 3.4E-05 59.7 24.9 89 182-280 1645-1733(2382)
344 PF13181 TPR_8: Tetratricopept 95.7 0.019 4E-07 40.7 4.5 31 381-411 2-32 (34)
345 KOG1538 Uncharacterized conser 95.7 1.3 2.9E-05 52.1 20.9 184 72-310 636-831 (1081)
346 PF13428 TPR_14: Tetratricopep 95.6 0.018 3.8E-07 43.8 4.2 42 210-257 2-43 (44)
347 PF13428 TPR_14: Tetratricopep 95.6 0.016 3.4E-07 44.0 3.9 42 381-428 2-43 (44)
348 PF13181 TPR_8: Tetratricopept 95.6 0.024 5.1E-07 40.2 4.6 31 421-451 2-32 (34)
349 KOG0545 Aryl-hydrocarbon recep 95.6 0.14 3.1E-06 53.0 11.5 114 110-240 179-295 (329)
350 PF03704 BTAD: Bacterial trans 95.6 0.34 7.4E-06 48.3 14.6 109 167-281 7-128 (146)
351 COG0790 FOG: TPR repeat, SEL1 95.6 0.4 8.7E-06 54.4 17.0 159 76-280 49-222 (292)
352 PF13431 TPR_17: Tetratricopep 95.5 0.011 2.5E-07 41.8 2.6 34 14-49 1-34 (34)
353 PRK13184 pknD serine/threonine 95.5 4 8.7E-05 52.8 26.7 112 173-290 482-593 (932)
354 PF13281 DUF4071: Domain of un 95.4 2 4.2E-05 49.3 21.3 213 36-280 107-336 (374)
355 KOG3864 Uncharacterized conser 95.4 0.0089 1.9E-07 60.3 2.2 84 1058-1153 101-186 (221)
356 KOG4507 Uncharacterized conser 95.4 0.3 6.5E-06 56.7 14.4 90 350-450 617-706 (886)
357 PF13516 LRR_6: Leucine Rich r 95.3 0.012 2.6E-07 37.9 1.9 24 1251-1274 1-24 (24)
358 PF03704 BTAD: Bacterial trans 95.3 0.27 5.7E-06 49.1 12.7 69 164-241 60-128 (146)
359 KOG2739 Leucine-rich acidic nu 95.3 0.0048 1E-07 64.9 -0.1 12 972-983 64-75 (260)
360 KOG2610 Uncharacterized conser 95.3 5.9 0.00013 43.4 26.3 149 131-308 117-272 (491)
361 PF13281 DUF4071: Domain of un 95.2 0.91 2E-05 51.9 17.6 190 27-240 140-336 (374)
362 PF11817 Foie-gras_1: Foie gra 95.2 3.8 8.3E-05 44.9 22.2 90 355-444 153-242 (247)
363 PF05843 Suf: Suppressor of fo 95.1 0.15 3.3E-06 57.0 11.5 136 111-281 3-139 (280)
364 KOG3864 Uncharacterized conser 95.1 0.015 3.3E-07 58.6 2.9 20 860-879 103-122 (221)
365 KOG0376 Serine-threonine phosp 95.0 0.023 5E-07 64.9 4.3 101 169-284 7-107 (476)
366 PRK13184 pknD serine/threonine 94.9 18 0.00039 47.1 40.3 101 5-106 488-589 (932)
367 PF13431 TPR_17: Tetratricopep 94.9 0.018 3.9E-07 40.8 2.0 32 232-269 2-33 (34)
368 KOG3735 Tropomodulin and leiom 94.6 0.083 1.8E-06 57.6 7.0 95 1056-1151 196-291 (353)
369 KOG1308 Hsp70-interacting prot 94.5 0.03 6.5E-07 60.9 3.4 88 177-279 125-212 (377)
370 KOG2739 Leucine-rich acidic nu 94.5 0.011 2.5E-07 62.1 0.2 40 942-984 62-102 (260)
371 KOG4014 Uncharacterized conser 94.4 0.4 8.7E-06 47.4 10.5 162 81-282 40-237 (248)
372 PF13516 LRR_6: Leucine Rich r 94.3 0.026 5.7E-07 36.3 1.7 21 1086-1106 2-22 (24)
373 KOG4322 Anaphase-promoting com 94.3 10 0.00022 43.3 22.4 194 204-449 268-471 (482)
374 PF13374 TPR_10: Tetratricopep 94.1 0.11 2.3E-06 38.8 5.0 33 421-453 3-35 (42)
375 KOG0890 Protein kinase of the 94.0 15 0.00033 50.9 26.9 70 375-452 1665-1734(2382)
376 PF13374 TPR_10: Tetratricopep 94.0 0.11 2.4E-06 38.6 4.9 36 28-63 2-37 (42)
377 KOG4014 Uncharacterized conser 94.0 1.1 2.3E-05 44.6 12.3 167 31-242 37-237 (248)
378 COG5187 RPN7 26S proteasome re 93.9 3.6 7.7E-05 44.1 16.9 138 80-241 87-224 (412)
379 KOG4814 Uncharacterized conser 93.9 19 0.00041 43.2 37.8 102 31-147 357-458 (872)
380 PF05843 Suf: Suppressor of fo 93.8 0.73 1.6E-05 51.6 13.0 97 168-279 3-100 (280)
381 KOG2581 26S proteasome regulat 93.7 15 0.00033 41.6 24.3 178 27-228 123-306 (493)
382 PF10579 Rapsyn_N: Rapsyn N-te 93.6 0.33 7.2E-06 41.2 7.1 73 28-104 6-78 (80)
383 KOG0376 Serine-threonine phosp 93.6 0.072 1.6E-06 61.0 4.4 91 5-104 17-107 (476)
384 PF10579 Rapsyn_N: Rapsyn N-te 93.6 0.76 1.6E-05 39.1 9.1 71 383-456 9-79 (80)
385 KOG3735 Tropomodulin and leiom 93.5 0.11 2.3E-06 56.7 5.3 90 890-979 199-289 (353)
386 KOG0687 26S proteasome regulat 93.0 4.5 9.8E-05 44.2 16.3 129 6-146 82-210 (393)
387 KOG0687 26S proteasome regulat 92.9 7.1 0.00015 42.8 17.5 136 43-199 79-214 (393)
388 PF00244 14-3-3: 14-3-3 protei 92.8 9.8 0.00021 41.2 19.2 188 31-240 4-200 (236)
389 KOG1538 Uncharacterized conser 92.7 7.5 0.00016 46.2 18.5 83 213-304 636-724 (1081)
390 PF12739 TRAPPC-Trs85: ER-Golg 92.3 4.1 8.9E-05 48.5 17.0 176 31-240 211-401 (414)
391 KOG2581 26S proteasome regulat 92.2 25 0.00054 40.0 22.3 156 109-281 124-279 (493)
392 KOG2114 Vacuolar assembly/sort 92.2 5.4 0.00012 49.2 17.2 200 189-448 350-549 (933)
393 KOG2114 Vacuolar assembly/sort 92.1 40 0.00087 42.1 27.2 36 23-58 363-398 (933)
394 COG5187 RPN7 26S proteasome re 92.0 12 0.00027 40.2 17.6 139 40-199 87-225 (412)
395 KOG1308 Hsp70-interacting prot 91.9 0.065 1.4E-06 58.4 1.1 86 5-99 127-212 (377)
396 PF13174 TPR_6: Tetratricopept 91.8 0.18 3.9E-06 35.2 3.0 28 211-238 2-29 (33)
397 PF13174 TPR_6: Tetratricopept 91.8 0.17 3.8E-06 35.2 2.9 32 69-101 1-32 (33)
398 PF08626 TRAPPC9-Trs120: Trans 91.8 17 0.00036 49.7 23.7 164 68-239 242-475 (1185)
399 KOG1497 COP9 signalosome, subu 91.5 19 0.00041 39.5 18.6 205 249-485 2-209 (399)
400 COG3118 Thioredoxin domain-con 91.3 8 0.00017 42.2 15.8 145 31-224 137-287 (304)
401 KOG4814 Uncharacterized conser 91.1 42 0.00092 40.4 36.6 101 209-309 354-454 (872)
402 PF12739 TRAPPC-Trs85: ER-Golg 90.9 9.3 0.0002 45.5 17.9 189 70-281 210-402 (414)
403 PF10516 SHNi-TPR: SHNi-TPR; 90.5 0.61 1.3E-05 33.8 4.5 32 381-412 2-33 (38)
404 KOG1920 IkappaB kinase complex 89.8 54 0.0012 42.7 23.2 61 347-407 959-1026(1265)
405 PF11207 DUF2989: Protein of u 89.4 8.5 0.00018 39.8 13.4 62 377-441 138-199 (203)
406 PF00244 14-3-3: 14-3-3 protei 89.2 37 0.00079 36.8 22.7 63 212-279 4-67 (236)
407 smart00028 TPR Tetratricopepti 89.2 0.37 8E-06 32.7 2.7 29 381-409 2-30 (34)
408 PF04781 DUF627: Protein of un 89.0 3.1 6.7E-05 38.3 8.9 101 172-278 2-107 (111)
409 KOG1914 mRNA cleavage and poly 88.8 58 0.0013 38.7 36.9 75 16-100 10-84 (656)
410 PF04910 Tcf25: Transcriptiona 88.8 16 0.00035 42.4 17.2 55 5-59 7-71 (360)
411 PF08626 TRAPPC9-Trs120: Trans 88.7 7.3 0.00016 53.1 16.5 58 206-263 239-296 (1185)
412 PF11207 DUF2989: Protein of u 88.5 13 0.00028 38.5 14.0 78 182-270 122-199 (203)
413 COG4649 Uncharacterized protei 88.4 9.9 0.00021 37.9 12.4 151 74-277 45-195 (221)
414 PF07079 DUF1347: Protein of u 88.4 56 0.0012 37.9 40.0 191 30-241 8-207 (549)
415 PF10516 SHNi-TPR: SHNi-TPR; 88.2 1.1 2.3E-05 32.6 4.4 33 421-453 2-34 (38)
416 KOG0686 COP9 signalosome, subu 87.7 4.2 9E-05 45.9 10.6 104 28-143 150-255 (466)
417 smart00028 TPR Tetratricopepti 87.7 0.47 1E-05 32.2 2.4 28 251-278 3-30 (34)
418 KOG4507 Uncharacterized conser 87.3 3.2 7E-05 48.7 9.8 104 168-284 214-318 (886)
419 PF14853 Fis1_TPR_C: Fis1 C-te 87.1 1.4 3E-05 34.8 4.9 33 251-283 3-35 (53)
420 COG4649 Uncharacterized protei 86.8 24 0.00053 35.2 14.0 149 36-237 47-195 (221)
421 COG3118 Thioredoxin domain-con 86.7 12 0.00026 41.0 13.1 59 210-274 135-193 (304)
422 smart00367 LRR_CC Leucine-rich 86.7 0.73 1.6E-05 30.3 2.6 20 1087-1106 3-23 (26)
423 PF04910 Tcf25: Transcriptiona 86.5 38 0.00083 39.3 18.4 157 110-282 41-226 (360)
424 smart00101 14_3_3 14-3-3 homol 86.5 53 0.0011 35.6 22.7 189 31-239 4-201 (244)
425 cd02680 MIT_calpain7_2 MIT: do 86.4 7.8 0.00017 33.1 9.3 28 430-457 16-43 (75)
426 KOG0686 COP9 signalosome, subu 86.4 28 0.0006 39.7 16.0 122 93-235 134-255 (466)
427 smart00367 LRR_CC Leucine-rich 85.9 0.84 1.8E-05 30.0 2.6 24 857-880 1-25 (26)
428 PF04781 DUF627: Protein of un 85.8 11 0.00024 34.7 10.6 103 74-195 2-107 (111)
429 cd02682 MIT_AAA_Arch MIT: doma 85.2 4.9 0.00011 34.3 7.5 34 420-453 6-39 (75)
430 COG3014 Uncharacterized protei 85.2 39 0.00084 37.5 15.9 51 48-102 41-91 (449)
431 PF04190 DUF410: Protein of un 85.2 66 0.0014 35.5 25.6 48 136-192 69-116 (260)
432 PF15015 NYD-SP12_N: Spermatog 84.7 18 0.00038 41.2 13.5 113 165-283 175-296 (569)
433 PF04190 DUF410: Protein of un 84.4 70 0.0015 35.3 24.3 104 29-142 11-115 (260)
434 PF08424 NRDE-2: NRDE-2, neces 84.3 55 0.0012 37.5 18.3 129 131-280 45-185 (321)
435 PF04053 Coatomer_WDAD: Coatom 84.0 21 0.00046 42.6 15.1 47 166-229 347-393 (443)
436 PF14853 Fis1_TPR_C: Fis1 C-te 83.7 1.5 3.2E-05 34.6 3.6 34 69-103 2-35 (53)
437 PF04053 Coatomer_WDAD: Coatom 82.5 23 0.00049 42.4 14.5 101 177-310 329-429 (443)
438 KOG1914 mRNA cleavage and poly 81.7 1.2E+02 0.0027 36.1 39.1 429 7-486 34-497 (656)
439 COG5107 RNA14 Pre-mRNA 3'-end 81.7 1.1E+02 0.0024 35.5 19.1 237 50-322 290-534 (660)
440 PF10952 DUF2753: Protein of u 81.7 13 0.00027 34.7 9.0 76 113-196 5-80 (140)
441 PRK10941 hypothetical protein; 81.5 6.1 0.00013 43.5 8.7 77 204-286 176-252 (269)
442 PF05053 Menin: Menin; InterP 81.3 16 0.00035 43.3 12.1 101 369-470 266-368 (618)
443 KOG3824 Huntingtin interacting 81.1 2.8 6.1E-05 45.1 5.5 59 173-240 123-181 (472)
444 KOG0128 RNA-binding protein SA 80.9 1.6E+02 0.0036 37.0 33.2 237 15-280 102-343 (881)
445 cd09034 BRO1_Alix_like Protein 80.7 1E+02 0.0022 35.8 19.0 158 106-281 108-283 (345)
446 PF10952 DUF2753: Protein of u 80.1 16 0.00034 34.2 9.1 69 383-451 4-81 (140)
447 PF13504 LRR_7: Leucine rich r 78.8 1.5 3.2E-05 25.5 1.5 13 918-930 2-14 (17)
448 PRK10941 hypothetical protein; 78.6 10 0.00022 41.8 9.1 77 22-105 175-251 (269)
449 KOG1258 mRNA processing protei 77.7 1.7E+02 0.0038 35.4 32.1 107 162-280 75-182 (577)
450 PF08424 NRDE-2: NRDE-2, neces 77.4 1.1E+02 0.0024 34.9 17.7 162 14-195 7-183 (321)
451 PF05053 Menin: Menin; InterP 77.1 73 0.0016 38.2 15.6 56 134-199 296-351 (618)
452 KOG3024 Uncharacterized conser 76.7 1.1E+02 0.0024 33.4 15.5 147 9-192 7-153 (312)
453 KOG3364 Membrane protein invol 76.6 33 0.00072 32.9 10.4 71 28-103 32-105 (149)
454 PF14561 TPR_20: Tetratricopep 76.6 27 0.00059 31.3 9.7 75 11-91 7-81 (90)
455 PF07721 TPR_4: Tetratricopept 76.5 3.1 6.8E-05 27.2 2.8 22 423-444 4-25 (26)
456 PF09670 Cas_Cas02710: CRISPR- 76.3 84 0.0018 36.9 16.5 65 29-98 132-198 (379)
457 PF07721 TPR_4: Tetratricopept 76.0 3 6.5E-05 27.3 2.6 24 381-404 2-25 (26)
458 KOG2062 26S proteasome regulat 75.9 2.1E+02 0.0046 35.5 19.3 56 393-450 370-425 (929)
459 KOG0889 Histone acetyltransfer 75.9 4.5E+02 0.0098 39.3 28.6 388 33-466 2487-2900(3550)
460 KOG3763 mRNA export factor TAP 75.5 3.5 7.6E-05 48.6 4.7 68 1055-1129 215-284 (585)
461 PF00560 LRR_1: Leucine Rich R 75.1 0.52 1.1E-05 29.5 -1.2 12 919-930 2-13 (22)
462 PF04212 MIT: MIT (microtubule 74.5 41 0.00088 28.3 9.9 30 423-452 8-37 (69)
463 cd02679 MIT_spastin MIT: domai 74.4 10 0.00022 32.8 6.1 61 423-493 11-71 (79)
464 cd09241 BRO1_ScRim20-like Prot 74.4 1.2E+02 0.0026 35.3 17.0 70 106-175 103-176 (355)
465 KOG2063 Vacuolar assembly/sort 74.1 2.2E+02 0.0047 37.0 19.9 31 249-279 504-534 (877)
466 TIGR03504 FimV_Cterm FimV C-te 73.9 8 0.00017 29.2 4.7 26 423-448 2-27 (44)
467 PF08311 Mad3_BUB1_I: Mad3/BUB 73.8 29 0.00063 33.4 9.9 87 180-276 40-126 (126)
468 KOG3807 Predicted membrane pro 73.7 1.5E+02 0.0033 32.8 16.8 117 74-240 190-306 (556)
469 KOG3364 Membrane protein invol 73.4 20 0.00044 34.2 8.2 72 209-284 32-106 (149)
470 PF09670 Cas_Cas02710: CRISPR- 72.8 1.2E+02 0.0026 35.6 16.7 66 70-146 133-198 (379)
471 COG3014 Uncharacterized protei 72.6 1.7E+02 0.0036 32.8 17.8 90 185-280 40-156 (449)
472 KOG2034 Vacuolar sorting prote 72.2 1.5E+02 0.0032 37.8 17.2 189 174-405 366-555 (911)
473 KOG4521 Nuclear pore complex, 72.2 1.3E+02 0.0029 39.2 16.9 139 31-226 923-1071(1480)
474 KOG2422 Uncharacterized conser 72.1 1.6E+02 0.0036 35.4 16.7 103 179-281 251-374 (665)
475 KOG3763 mRNA export factor TAP 71.6 5 0.00011 47.4 4.7 132 867-1018 154-286 (585)
476 PF09613 HrpB1_HrpK: Bacterial 70.9 32 0.00069 34.3 9.4 88 164-266 8-95 (160)
477 cd09240 BRO1_Alix Protein-inte 70.6 2.1E+02 0.0046 33.1 19.5 158 105-281 115-287 (346)
478 cd02683 MIT_1 MIT: domain cont 70.6 56 0.0012 28.3 9.8 30 423-452 9-38 (77)
479 COG4976 Predicted methyltransf 70.3 3.3 7.3E-05 43.0 2.6 60 218-283 4-63 (287)
480 PF15015 NYD-SP12_N: Spermatog 69.8 1.6E+02 0.0035 33.9 15.4 101 131-240 190-293 (569)
481 KOG2908 26S proteasome regulat 69.0 2E+02 0.0044 32.3 18.5 99 351-449 86-186 (380)
482 TIGR03504 FimV_Cterm FimV C-te 68.8 14 0.00029 28.0 4.9 26 170-195 3-28 (44)
483 COG4976 Predicted methyltransf 68.6 4.7 0.0001 41.9 3.2 56 389-450 4-59 (287)
484 smart00101 14_3_3 14-3-3 homol 68.5 1.8E+02 0.0039 31.6 22.6 55 396-450 144-201 (244)
485 cd02681 MIT_calpain7_1 MIT: do 67.6 38 0.00083 29.2 8.0 30 423-452 9-38 (76)
486 PF03097 BRO1: BRO1-like domai 67.5 1.6E+02 0.0034 34.7 16.5 158 106-282 104-272 (377)
487 KOG2561 Adaptor protein NUB1, 66.9 83 0.0018 36.3 12.5 136 108-255 162-313 (568)
488 cd09243 BRO1_Brox_like Protein 66.9 1.8E+02 0.0038 33.7 15.9 69 106-174 106-185 (353)
489 PF04097 Nic96: Nup93/Nic96; 66.4 1.2E+02 0.0025 38.4 15.6 32 164-195 412-443 (613)
490 KOG3824 Huntingtin interacting 66.1 7.7 0.00017 42.0 4.3 70 209-284 116-185 (472)
491 PF09613 HrpB1_HrpK: Bacterial 65.5 27 0.0006 34.8 7.7 73 5-85 23-95 (160)
492 cd09242 BRO1_ScBro1_like Prote 65.1 1.7E+02 0.0036 34.0 15.5 70 106-175 104-175 (348)
493 KOG2561 Adaptor protein NUB1, 64.7 1.4E+02 0.0031 34.5 13.8 46 381-426 268-313 (568)
494 KOG2422 Uncharacterized conser 63.9 3.3E+02 0.0072 33.0 17.2 97 4-101 250-374 (665)
495 PF10255 Paf67: RNA polymerase 63.4 30 0.00065 40.4 8.8 73 381-454 123-198 (404)
496 KOG1258 mRNA processing protei 62.8 3.6E+02 0.0078 32.9 35.9 51 7-59 60-110 (577)
497 KOG3807 Predicted membrane pro 61.9 2.6E+02 0.0057 31.1 15.2 138 34-225 190-327 (556)
498 COG5091 SGT1 Suppressor of G2 61.3 21 0.00044 38.0 6.2 72 395-466 54-125 (368)
499 KOG1310 WD40 repeat protein [G 61.1 25 0.00053 41.3 7.4 89 177-280 385-476 (758)
500 COG3629 DnrI DNA-binding trans 59.6 77 0.0017 35.0 10.7 62 210-277 154-215 (280)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-34 Score=316.19 Aligned_cols=358 Identities=20% Similarity=0.239 Sum_probs=181.0
Q ss_pred hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccCh
Q 000742 5 EMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHF 84 (1313)
Q Consensus 5 ~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~ 84 (1313)
.|+++.|+..|+.+++.+|...++ |.++|.++...|+.+.|...|.+|+++. ++..-+...+|..+..+|+.
T Consensus 129 rg~~~~al~~y~~aiel~p~fida--~inla~al~~~~~~~~a~~~~~~alqln------P~l~ca~s~lgnLlka~Grl 200 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDA--YINLAAALVTQGDLELAVQCFFEALQLN------PDLYCARSDLGNLLKAEGRL 200 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHH--HhhHHHHHHhcCCCcccHHHHHHHHhcC------cchhhhhcchhHHHHhhccc
Confidence 344455555555555555444444 4455555555555555555555554444 22244444455555555555
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHH
Q 000742 85 KDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKE 164 (1313)
Q Consensus 85 ~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~ 164 (1313)
.+|...| .+|++..|.. +.+|.++|-++... |+...|+++|++|+++ .|.
T Consensus 201 ~ea~~cY-lkAi~~qp~f------AiawsnLg~~f~~~--------Gei~~aiq~y~eAvkl---------------dP~ 250 (966)
T KOG4626|consen 201 EEAKACY-LKAIETQPCF------AIAWSNLGCVFNAQ--------GEIWLAIQHYEEAVKL---------------DPN 250 (966)
T ss_pred chhHHHH-HHHHhhCCce------eeeehhcchHHhhc--------chHHHHHHHHHHhhcC---------------CCc
Confidence 5555555 5555444322 23445555555444 5555555555555544 334
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhch
Q 000742 165 YIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEH 244 (1313)
Q Consensus 165 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~ 244 (1313)
++.+|.++|.+|...+.|++|+..|.+|+.+ .+..+.++-++|.+|+.+|..+-|+..|++|+++.+
T Consensus 251 f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l---------rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P---- 317 (966)
T KOG4626|consen 251 FLDAYINLGNVYKEARIFDRAVSCYLRALNL---------RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQP---- 317 (966)
T ss_pred chHHHhhHHHHHHHHhcchHHHHHHHHHHhc---------CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCC----
Confidence 4555555555555555555555555555544 333445555555555555555555555555555533
Q ss_pred hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742 245 CQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMI 324 (1313)
Q Consensus 245 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~ 324 (1313)
....+|.++|.++...|+..+|..+|.+|+.+.+...+....++.+|...|.+..|...|.++.+..+..
T Consensus 318 --~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~-------- 387 (966)
T KOG4626|consen 318 --NFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEF-------- 387 (966)
T ss_pred --CchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhh--------
Confidence 4445555555555555555555555555555555444433333333333333333333333322211111
Q ss_pred HhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHH
Q 000742 325 IAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYT 404 (1313)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~ 404 (1313)
+....+|+..|...+++++|+..|++++.|. |..+++|.++|..|..+|+.+.|+..|.
T Consensus 388 ---------------aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~------P~fAda~~NmGnt~ke~g~v~~A~q~y~ 446 (966)
T KOG4626|consen 388 ---------------AAAHNNLASIYKQQGNLDDAIMCYKEALRIK------PTFADALSNMGNTYKEMGDVSAAIQCYT 446 (966)
T ss_pred ---------------hhhhhhHHHHHHhcccHHHHHHHHHHHHhcC------chHHHHHHhcchHHHHhhhHHHHHHHHH
Confidence 1224555666666666666666666665543 3344666666666666666666666666
Q ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000742 405 KSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIA 450 (1313)
Q Consensus 405 kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~ 450 (1313)
+|+.+.+ ..+.++.++|.+|...|+..+|+..|++|+++.
T Consensus 447 rAI~~nP------t~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 447 RAIQINP------TFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHhcCc------HHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 6665533 445556666666666666666666666666553
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-34 Score=316.02 Aligned_cols=389 Identities=20% Similarity=0.205 Sum_probs=334.2
Q ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHH
Q 000742 8 MSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDA 87 (1313)
Q Consensus 8 ~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A 87 (1313)
++.....-..+++..+...++ |-++|+++..+|++++|+.+|+.++++.++. +++|.++|.++...|+.+.|
T Consensus 98 ~d~s~a~~~~a~r~~~q~ae~--ysn~aN~~kerg~~~~al~~y~~aiel~p~f------ida~inla~al~~~~~~~~a 169 (966)
T KOG4626|consen 98 LDKSSAGSLLAIRKNPQGAEA--YSNLANILKERGQLQDALALYRAAIELKPKF------IDAYINLAAALVTQGDLELA 169 (966)
T ss_pred hhhhhhhhhhhhhccchHHHH--HHHHHHHHHHhchHHHHHHHHHHHHhcCchh------hHHHhhHHHHHHhcCCCccc
Confidence 444444444555666665444 9999999999999999999999999988554 89999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHH
Q 000742 88 LIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYID 167 (1313)
Q Consensus 88 ~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~ 167 (1313)
...| .+|+++.|..- -+...+|..+..+ |+.++|...|.+|++. .|.++.
T Consensus 170 ~~~~-~~alqlnP~l~------ca~s~lgnLlka~--------Grl~ea~~cYlkAi~~---------------qp~fAi 219 (966)
T KOG4626|consen 170 VQCF-FEALQLNPDLY------CARSDLGNLLKAE--------GRLEEAKACYLKAIET---------------QPCFAI 219 (966)
T ss_pred HHHH-HHHHhcCcchh------hhhcchhHHHHhh--------cccchhHHHHHHHHhh---------------CCceee
Confidence 9999 99999987653 3567889998877 9999999999999988 457789
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhh
Q 000742 168 AHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQG 247 (1313)
Q Consensus 168 ~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~ 247 (1313)
+|.++|-++..+|+...|+.+|++|+++ +|....+|.+||.+|...+.|++|+..|.+|+.+.+ .
T Consensus 220 awsnLg~~f~~~Gei~~aiq~y~eAvkl---------dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp------n 284 (966)
T KOG4626|consen 220 AWSNLGCVFNAQGEIWLAIQHYEEAVKL---------DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP------N 284 (966)
T ss_pred eehhcchHHhhcchHHHHHHHHHHhhcC---------CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC------c
Confidence 9999999999999999999999999998 566788999999999999999999999999999866 8
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000742 248 EAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAK 327 (1313)
Q Consensus 248 ~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~ 327 (1313)
.+.++-++|.+|+.+|..+-|+..|++|+++.|.+.+.+..++.++-.+|.+.+|...|.++..+.+..
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~h----------- 353 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNH----------- 353 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCcc-----------
Confidence 899999999999999999999999999999999999988878888888888888888888776433332
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 000742 328 GTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSW 407 (1313)
Q Consensus 328 ~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal 407 (1313)
+.++.+||.++.+++.++.|..+|++++++.. ..+.++.+||.+|.++|++++|+.+|++|+
T Consensus 354 ------------adam~NLgni~~E~~~~e~A~~ly~~al~v~p------~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal 415 (966)
T KOG4626|consen 354 ------------ADAMNNLGNIYREQGKIEEATRLYLKALEVFP------EFAAAHNNLASIYKQQGNLDDAIMCYKEAL 415 (966)
T ss_pred ------------HHHHHHHHHHHHHhccchHHHHHHHHHHhhCh------hhhhhhhhHHHHHHhcccHHHHHHHHHHHH
Confidence 34488999999999999999999999998774 455999999999999999999999999999
Q ss_pred HHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhHHHHHHhhcCHHHHHHHHHHH
Q 000742 408 EMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMIRFDNIEEARRLQHEI 487 (1313)
Q Consensus 408 ~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~~~~~~al~~L~~~~~~~~~~~~~a~~~~e~~ 487 (1313)
.+.+ .-+.++.++|.+|..+|+...|+.+|.+|+.+. +..+.|+.+|+.+|... ++..+|..-++..
T Consensus 416 rI~P------~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n------Pt~AeAhsNLasi~kDs-Gni~~AI~sY~~a 482 (966)
T KOG4626|consen 416 RIKP------TFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN------PTFAEAHSNLASIYKDS-GNIPEAIQSYRTA 482 (966)
T ss_pred hcCc------hHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC------cHHHHHHhhHHHHhhcc-CCcHHHHHHHHHH
Confidence 8865 667889999999999999999999999999874 34778999999988544 4444444444443
Q ss_pred HHHH
Q 000742 488 DKLK 491 (1313)
Q Consensus 488 ~~l~ 491 (1313)
.+++
T Consensus 483 Lklk 486 (966)
T KOG4626|consen 483 LKLK 486 (966)
T ss_pred HccC
Confidence 3343
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=1.9e-29 Score=335.68 Aligned_cols=204 Identities=17% Similarity=0.086 Sum_probs=111.2
Q ss_pred cccEEEccCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhcCCCCceeEEEeecCCCCHHHHHHHHHH
Q 000742 1059 ESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKA 1138 (1313)
Q Consensus 1059 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~ 1138 (1313)
+|+.|++++|.+++. ++..+..+++|+.|+|++|.+++..+..+..+ ..|+.|+|++|.++.. ++..
T Consensus 381 ~L~~L~l~~n~l~~~----~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~----~~~~ 447 (968)
T PLN00113 381 NLFKLILFSNSLEGE----IPKSLGACRSLRRVRLQDNSFSGELPSEFTKL-----PLVYFLDISNNNLQGR----INSR 447 (968)
T ss_pred CCCEEECcCCEeccc----CCHHHhCCCCCCEEECcCCEeeeECChhHhcC-----CCCCEEECcCCcccCc----cChh
Confidence 344444444444433 23334444555555555555544333333221 1255555555555432 3333
Q ss_pred hhcCCCccEEEccCCCCChhhh-hhhcccccccCCcccccccccccccccccccccccccCCCCcccccccCCccchhhh
Q 000742 1139 LSENDTLEELNLADNASKELTL-QQNLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIRVES 1217 (1313)
Q Consensus 1139 l~~~~~L~~L~Ls~N~i~~~~~-~~~l~~l~~~~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 1217 (1313)
+..+++|+.|+|++|.+.+... .....+|+.+++++|.++.. ....+.++++|+.|+|++|.+++..
T Consensus 448 ~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~------------~~~~~~~l~~L~~L~Ls~N~l~~~~ 515 (968)
T PLN00113 448 KWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGA------------VPRKLGSLSELMQLKLSENKLSGEI 515 (968)
T ss_pred hccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCc------------cChhhhhhhccCEEECcCCcceeeC
Confidence 4445555555555555443211 01113444555555555431 1234566777888888888887765
Q ss_pred ccccCCCCcccccccCCccchhhHHHHHHHHhccccCceecCCCCCCCHHHHHHHHHHHhcCCCCCcccccccc
Q 000742 1218 AASGFDNSCTSSCQKNSSFECQFVQELSSAIGMAKPLQLLDLSNNGFSTQAVKTLYCAWSSRSGAGPAWKHIKE 1291 (1313)
Q Consensus 1218 ~~~~~~~~~~~~L~~L~Ls~n~l~~~l~~~l~~~~~L~~LdLs~N~l~~~~~~~l~~~l~~~~~~~~~~~~i~~ 1291 (1313)
|. ......+|+.|+|++|.+++.+|..+..+++|+.|||++|.+++..+..+.. +..-..++++.|.+.+
T Consensus 516 p~---~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 516 PD---ELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGN-VESLVQVNISHNHLHG 585 (968)
T ss_pred Ch---HHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhc-CcccCEEeccCCccee
Confidence 53 1223357888888888888888888888888888888888888777666543 2221336666666654
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=3e-29 Score=333.85 Aligned_cols=394 Identities=18% Similarity=0.127 Sum_probs=256.8
Q ss_pred CCeEEecCCCCCcCCHHHHHHHhhcCCCcCEEEecCCCCCHHHHHHHHHHHHhcccCccceEEEccCCCCCHHHHHHHHh
Q 000742 832 EDEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICE 911 (1313)
Q Consensus 832 ~~~l~l~~~~l~~~~~~~l~~~L~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~~~~l~~L~Ls~n~l~~~~~~~l~~ 911 (1313)
++.|+|++|.+.... ...+...++|++|+|++|.+.......+.. ..+|+.|+|++|+++...+..+..
T Consensus 166 L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-------l~~L~~L~L~~n~l~~~~p~~l~~ 234 (968)
T PLN00113 166 LKVLDLGGNVLVGKI----PNSLTNLTSLEFLTLASNQLVGQIPRELGQ-------MKSLKWIYLGYNNLSGEIPYEIGG 234 (968)
T ss_pred CCEEECccCcccccC----ChhhhhCcCCCeeeccCCCCcCcCChHHcC-------cCCccEEECcCCccCCcCChhHhc
Confidence 344777777664432 223344467777777777665433333322 345667777777776555555544
Q ss_pred cccCCCCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCCCCCChhhH
Q 000742 912 CPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAI 991 (1313)
Q Consensus 912 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 991 (1313)
+ ++|++|+|++|.++.. ++..+..+++|++|+|++|.+++ .++..+..+++|++|+|++|.+ .+.
T Consensus 235 l----~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l-~~~-- 299 (968)
T PLN00113 235 L----TSLNHLDLVYNNLTGP----IPSSLGNLKNLQYLFLYQNKLSG----PIPPSIFSLQKLISLDLSDNSL-SGE-- 299 (968)
T ss_pred C----CCCCEEECcCceeccc----cChhHhCCCCCCEEECcCCeeec----cCchhHhhccCcCEEECcCCee-ccC--
Confidence 3 6777777777776654 55666677777777777777654 3344455667777777777763 222
Q ss_pred HHHHHhhccCCccceeecCCCCCChHHHHHHHHHhhcCCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCCC
Q 000742 992 TNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLE 1071 (1313)
Q Consensus 992 ~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 1071 (1313)
++..+..+++|+.|++++|.+++..+..+.. .++|+.|+|++|.+..... ..+ ...++|+.|+|++|.++
T Consensus 300 --~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~---l~~L~~L~L~~n~l~~~~p----~~l-~~~~~L~~L~Ls~n~l~ 369 (968)
T PLN00113 300 --IPELVIQLQNLEILHLFSNNFTGKIPVALTS---LPRLQVLQLWSNKFSGEIP----KNL-GKHNNLTVLDLSTNNLT 369 (968)
T ss_pred --CChhHcCCCCCcEEECCCCccCCcCChhHhc---CCCCCEEECcCCCCcCcCC----hHH-hCCCCCcEEECCCCeeE
Confidence 3444556777777777777776655544433 3557777777777654322 122 23456777777777776
Q ss_pred hhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhcCCCCceeEEEeecCCCCHHHHHHHHHHhhcCCCccEEEcc
Q 000742 1072 STCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLA 1151 (1313)
Q Consensus 1072 ~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls 1151 (1313)
+. ++..+...++|+.|++++|.+.+..+..+... .+|+.|+|++|.++.. ++..+..+++|+.|+|+
T Consensus 370 ~~----~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~-----~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls 436 (968)
T PLN00113 370 GE----IPEGLCSSGNLFKLILFSNSLEGEIPKSLGAC-----RSLRRVRLQDNSFSGE----LPSEFTKLPLVYFLDIS 436 (968)
T ss_pred ee----CChhHhCcCCCCEEECcCCEecccCCHHHhCC-----CCCCEEECcCCEeeeE----CChhHhcCCCCCEEECc
Confidence 55 34455566777777777777766555555432 2488888888887744 56667778888888888
Q ss_pred CCCCChhhhh--hhcccccccCCcccccccccccccccccccccccccCCCCcccccccCCccchhhhccccCCCCcccc
Q 000742 1152 DNASKELTLQ--QNLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIRVESAASGFDNSCTSS 1229 (1313)
Q Consensus 1152 ~N~i~~~~~~--~~l~~l~~~~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~ 1229 (1313)
+|.+.+.... ..+.+|+.++|++|.+..... . ...+++|+.|+|++|.+++..+. ......+
T Consensus 437 ~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p------------~-~~~~~~L~~L~ls~n~l~~~~~~---~~~~l~~ 500 (968)
T PLN00113 437 NNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP------------D-SFGSKRLENLDLSRNQFSGAVPR---KLGSLSE 500 (968)
T ss_pred CCcccCccChhhccCCCCcEEECcCceeeeecC------------c-ccccccceEEECcCCccCCccCh---hhhhhhc
Confidence 8887765221 123667777888887654211 1 22357899999999999887553 2223468
Q ss_pred cccCCccchhhHHHHHHHHhccccCceecCCCCCCCHHHHHHHHHHHhcCCCCCcccccccc
Q 000742 1230 CQKNSSFECQFVQELSSAIGMAKPLQLLDLSNNGFSTQAVKTLYCAWSSRSGAGPAWKHIKE 1291 (1313)
Q Consensus 1230 L~~L~Ls~n~l~~~l~~~l~~~~~L~~LdLs~N~l~~~~~~~l~~~l~~~~~~~~~~~~i~~ 1291 (1313)
|+.|+|++|++.+.+|..+..+++|+.|+|++|.+++..+..+... ..-..++++.|.+.+
T Consensus 501 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~ 561 (968)
T PLN00113 501 LMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEM-PVLSQLDLSQNQLSG 561 (968)
T ss_pred cCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCc-ccCCEEECCCCcccc
Confidence 9999999999999999999999999999999999999888777543 222346777776654
No 5
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.95 E-value=3.2e-25 Score=278.22 Aligned_cols=382 Identities=15% Similarity=0.095 Sum_probs=287.2
Q ss_pred hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccCh
Q 000742 5 EMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHF 84 (1313)
Q Consensus 5 ~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~ 84 (1313)
.|+|++|+..|+++++..|.. ..|.++|.+|...|++++|++.+++++++.+ ....+++.+|.+|..+|+|
T Consensus 140 ~~~~~~Ai~~y~~al~~~p~~---~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p------~~~~a~~~~a~a~~~lg~~ 210 (615)
T TIGR00990 140 NKDFNKAIKLYSKAIECKPDP---VYYSNRAACHNALGDWEKVVEDTTAALELDP------DYSKALNRRANAYDGLGKY 210 (615)
T ss_pred cCCHHHHHHHHHHHHhcCCch---HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHcCCH
Confidence 588999999999999998862 3588999999999999999999999998863 3378999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHHHH------------------------HHHHHHHHHHHH-------------------
Q 000742 85 KDALIYQVKKHLELAKDASDLVEQQ------------------------RACTQLGRTYYE------------------- 121 (1313)
Q Consensus 85 ~~A~~~~~~kal~l~~~~~~~~~~a------------------------~a~~~lg~~y~~------------------- 121 (1313)
++|+..+ .++..+.+......... .++..++..+..
T Consensus 211 ~eA~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (615)
T TIGR00990 211 ADALLDL-TASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEE 289 (615)
T ss_pred HHHHHHH-HHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccc
Confidence 9999988 76654321110000000 000111221110
Q ss_pred -------Hhc--cCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000742 122 -------MFL--RSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRG 192 (1313)
Q Consensus 122 -------l~~--~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~a 192 (1313)
++. ......+.|++|+.+|+++++.. ...|..+.++..+|.+|..+|++++|+..|+++
T Consensus 290 ~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~------------~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ka 357 (615)
T TIGR00990 290 TGNGQLQLGLKSPESKADESYEEAARAFEKALDLG------------KLGEKEAIALNLRGTFKCLKGKHLEALADLSKS 357 (615)
T ss_pred cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC------------CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 000 00001146777777777777652 113577889999999999999999999999999
Q ss_pred HhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHH
Q 000742 193 LEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCY 272 (1313)
Q Consensus 193 l~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 272 (1313)
+++. +....+|..+|.+|...|++++|+.+|++++++.+ ....+++.+|.+|+..|++++|+.+|
T Consensus 358 l~l~---------P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~ 422 (615)
T TIGR00990 358 IELD---------PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS------EDPDIYYHRAQLHFIKGEFAQAGKDY 422 (615)
T ss_pred HHcC---------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9983 33567899999999999999999999999998855 66789999999999999999999999
Q ss_pred HHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHH
Q 000742 273 QKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSM 352 (1313)
Q Consensus 273 ~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~ 352 (1313)
++++++.|........++.++..+|++.+|+..++++....+.. ...+..+|..+..
T Consensus 423 ~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~-----------------------~~~~~~lg~~~~~ 479 (615)
T TIGR00990 423 QKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA-----------------------PDVYNYYGELLLD 479 (615)
T ss_pred HHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----------------------hHHHHHHHHHHHH
Confidence 99999998766655666667777777777777777665322211 1225667888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCchhh-HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Q 000742 353 IFAWLKHCEYAKRKKRIASELCDKGKL-SDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLD 431 (1313)
Q Consensus 353 ~~~~~~A~~~~~~a~~i~~~~~~~~~~-a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~ 431 (1313)
.++|++|++++++++.+.......... ...+...+..|...|++++|+.+|++++++.+ ....++..+|.+|.
T Consensus 480 ~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p------~~~~a~~~la~~~~ 553 (615)
T TIGR00990 480 QNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP------ECDIAVATMAQLLL 553 (615)
T ss_pred ccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC------CcHHHHHHHHHHHH
Confidence 999999999999999886543222111 22233333444557999999999999998743 44557899999999
Q ss_pred HcCCHHHHHHHHHHHHHHHHH
Q 000742 432 SNGDWAGALDAFQEGYRIAVE 452 (1313)
Q Consensus 432 ~~g~~~~A~~~~~kAl~i~~~ 452 (1313)
.+|++++|+.+|++|+++.+.
T Consensus 554 ~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 554 QQGDVDEALKLFERAAELART 574 (615)
T ss_pred HccCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999765
No 6
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.93 E-value=6.3e-25 Score=232.16 Aligned_cols=345 Identities=19% Similarity=0.236 Sum_probs=245.9
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 000742 33 VIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRAC 112 (1313)
Q Consensus 33 ~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~ 112 (1313)
.-|.-+++.|++...+.+|+.|++.-.. +-..+..+|..+|.+|+.+++|++|++|- .--+-+++..++....+++.
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvGTe--Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH-~hDltlar~lgdklGEAKss 98 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVGTE--DLSTLSAIYSQLGNAYFYLKDYEKALKYH-THDLTLARLLGDKLGEAKSS 98 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhcch--HHHHHHHHHHHhcchhhhHhhHHHHHhhh-hhhHHHHHHhcchhcccccc
Confidence 4477788899999999999999887532 22234678889999999999999999998 88888888888888888889
Q ss_pred HHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000742 113 TQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRG 192 (1313)
Q Consensus 113 ~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~a 192 (1313)
-++|.++..+ |.|++|+.+..+-+.+++++++.. ....+++++|.+|...|+--.-..--++
T Consensus 99 gNLGNtlKv~--------G~fdeA~~cc~rhLd~areLgDrv---------~e~RAlYNlgnvYhakGk~~g~~~pee~- 160 (639)
T KOG1130|consen 99 GNLGNTLKVK--------GAFDEALTCCFRHLDFARELGDRV---------LESRALYNLGNVYHAKGKCTGLEAPEEK- 160 (639)
T ss_pred ccccchhhhh--------cccchHHHHHHHHhHHHHHHhHHH---------hhhHHHhhhhhhhhhcccccCCCChhhc-
Confidence 9999998877 999999999999999998888865 4578899999999887752110000000
Q ss_pred HhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHH
Q 000742 193 LEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCY 272 (1313)
Q Consensus 193 l~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 272 (1313)
+..... ....++.|.++|+.-+++.++.++.....++|-+||..|+-+|+|++|+.+-
T Consensus 161 ---------g~f~~e-------------v~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H 218 (639)
T KOG1130|consen 161 ---------GAFNAE-------------VTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFH 218 (639)
T ss_pred ---------ccccHH-------------HHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHH
Confidence 000000 0112344455555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHH
Q 000742 273 QKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSM 352 (1313)
Q Consensus 273 ~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~ 352 (1313)
+.-+.+.++.++...... + +.++|..+..
T Consensus 219 ~~RL~ia~efGDrAaeRR-A--------------------------------------------------~sNlgN~hif 247 (639)
T KOG1130|consen 219 KLRLEIAQEFGDRAAERR-A--------------------------------------------------HSNLGNCHIF 247 (639)
T ss_pred HHHHHHHHHhhhHHHHHH-h--------------------------------------------------hcccchhhhh
Confidence 555555555444321111 1 2233333334
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Q 000742 353 IFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDS 432 (1313)
Q Consensus 353 ~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~ 432 (1313)
.++++.|+++|+.++.++.++++....+...+.+|..|.-..++++||.|+++-++|++++.+..++..+++.+|.+|..
T Consensus 248 lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~a 327 (639)
T KOG1130|consen 248 LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNA 327 (639)
T ss_pred hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 44444555555555555555566666678888999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhHHHHH
Q 000742 433 NGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHM 471 (1313)
Q Consensus 433 ~g~~~~A~~~~~kAl~i~~~~~~~~~~~~al~~L~~~~~ 471 (1313)
.|..++|+.+.++++++..+.+++..+..+-.++....+
T Consensus 328 lg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~ 366 (639)
T KOG1130|consen 328 LGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLIL 366 (639)
T ss_pred hhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHH
Confidence 999999999999999999999999988888777775443
No 7
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.93 E-value=3.3e-24 Score=226.70 Aligned_cols=329 Identities=21% Similarity=0.250 Sum_probs=252.8
Q ss_pred hhhHHHHHHHHHHHHHhcCcH--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHcc
Q 000742 5 EMQMSEAKRAYRSAKEEGNRQ--EEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLE 82 (1313)
Q Consensus 5 ~~~~~~A~~~l~~a~~~~~~~--~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g 82 (1313)
.|+....+..|+.|++.+... ....+|.++|++|+..++|++|++|..--+-+.....+....+.+.-++|..+..+|
T Consensus 30 ~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G 109 (639)
T KOG1130|consen 30 MGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKG 109 (639)
T ss_pred ccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhc
Confidence 356777888999999987653 344678899999999999999999999999998888888888999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcc------------CCcchhhHHHHHHHHHHHHHHHHHh
Q 000742 83 HFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLR------------SDDDHYSIRNAKKYFKSAMKLAQTL 150 (1313)
Q Consensus 83 ~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~------------~~~~~~~~~~A~~~~~~Al~l~~~~ 150 (1313)
.|++|+.+. .+.+.+++..+|....++++|++|.+|...+.. ..+....++.|.++|..-+++.+++
T Consensus 110 ~fdeA~~cc-~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~l 188 (639)
T KOG1130|consen 110 AFDEALTCC-FRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKL 188 (639)
T ss_pred ccchHHHHH-HHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999 999999999999999999999999999976311 1112234556666666666666666
Q ss_pred ccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHH
Q 000742 151 KENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSRE 230 (1313)
Q Consensus 151 ~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~ 230 (1313)
++.- ....+|.++|..|+-+|+|++|+.+.+.-+.++++. ++....-+++.++|++|.-+|+++.|++
T Consensus 189 gDr~---------aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef---GDrAaeRRA~sNlgN~hiflg~fe~A~e 256 (639)
T KOG1130|consen 189 GDRL---------AQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF---GDRAAERRAHSNLGNCHIFLGNFELAIE 256 (639)
T ss_pred hhHH---------hhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh---hhHHHHHHhhcccchhhhhhcccHhHHH
Confidence 5543 334566667777777777777777666666666665 5555566666677777777777777777
Q ss_pred HHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHH
Q 000742 231 HIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELK 310 (1313)
Q Consensus 231 ~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~ 310 (1313)
+|++++.++.+.++....+...|.||..|.-.+++++|+.|+.+-+.++++
T Consensus 257 hYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqe----------------------------- 307 (639)
T KOG1130|consen 257 HYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQE----------------------------- 307 (639)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------
Confidence 777776666666666666666666666666666666666666666665544
Q ss_pred HHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHH
Q 000742 311 KEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESY 390 (1313)
Q Consensus 311 ~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y 390 (1313)
+.+......+++.+|.+|
T Consensus 308 --------------------------------------------------------------L~DriGe~RacwSLgna~ 325 (639)
T KOG1130|consen 308 --------------------------------------------------------------LEDRIGELRACWSLGNAF 325 (639)
T ss_pred --------------------------------------------------------------HHHhhhhHHHHHHHHHHH
Confidence 334444558889999999
Q ss_pred HHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHH
Q 000742 391 QKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWA 437 (1313)
Q Consensus 391 ~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~ 437 (1313)
...|..++|+.+.++.+++..++.+..+...+..++...-...|..+
T Consensus 326 ~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 326 NALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQED 372 (639)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCc
Confidence 99999999999999999999999998888888888888888777654
No 8
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.93 E-value=1.8e-23 Score=262.37 Aligned_cols=397 Identities=14% Similarity=0.096 Sum_probs=295.6
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHH
Q 000742 27 EARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLV 106 (1313)
Q Consensus 27 ~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~ 106 (1313)
.+..+..+|..|+..|+|++|+..|++++.+.+. ...|.++|.+|..+|++++|+..+ ++++++.|..
T Consensus 126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-------~~~~~n~a~~~~~l~~~~~Ai~~~-~~al~l~p~~---- 193 (615)
T TIGR00990 126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-------PVYYSNRAACHNALGDWEKVVEDT-TAALELDPDY---- 193 (615)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-------hHHHHHHHHHHHHhCCHHHHHHHH-HHHHHcCCCC----
Confidence 3566889999999999999999999999987632 457999999999999999999999 9999987654
Q ss_pred HHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHH-----------------------HHh-ccCCCCCc----
Q 000742 107 EQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLA-----------------------QTL-KENPATSR---- 158 (1313)
Q Consensus 107 ~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~-----------------------~~~-~~~~~~~~---- 158 (1313)
..+++.+|.+|..+ |++++|+..|..+..+. ... ...+....
T Consensus 194 --~~a~~~~a~a~~~l--------g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~ 263 (615)
T TIGR00990 194 --SKALNRRANAYDGL--------GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTF 263 (615)
T ss_pred --HHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHH
Confidence 36899999999988 99999998876553210 000 00000000
Q ss_pred --------------------chhhHHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHH
Q 000742 159 --------------------SSFLKEYIDAHNNIGMLQ---MELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNL 215 (1313)
Q Consensus 159 --------------------~~~~p~~~~~~~~la~~y---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l 215 (1313)
....+.....+..+|..+ ...++|++|+.+|+++++.. ...+..+.++..+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~------~~~~~~a~a~~~l 337 (615)
T TIGR00990 264 VGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLG------KLGEKEAIALNLR 337 (615)
T ss_pred HHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC------CCChhhHHHHHHH
Confidence 000111122223333332 22468999999999998863 2246678899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHh
Q 000742 216 GNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQN 295 (1313)
Q Consensus 216 g~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~ 295 (1313)
|.+|..+|++++|+.+|++++++.+ ....++..+|.++...|++++|+.+|++++++.|.....+...+.++..
T Consensus 338 g~~~~~~g~~~eA~~~~~kal~l~P------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~ 411 (615)
T TIGR00990 338 GTFKCLKGKHLEALADLSKSIELDP------RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI 411 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCC------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999865 6778999999999999999999999999999988776666666666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 000742 296 IETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCD 375 (1313)
Q Consensus 296 lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~ 375 (1313)
+|++.+|+..|+++....+.. ...+..++..+...+++++|+.++++++...
T Consensus 412 ~g~~~~A~~~~~kal~l~P~~-----------------------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~----- 463 (615)
T TIGR00990 412 KGEFAQAGKDYQKSIDLDPDF-----------------------IFSHIQLGVTQYKEGSIASSMATFRRCKKNF----- 463 (615)
T ss_pred cCCHHHHHHHHHHHHHcCccC-----------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----
Confidence 777777777766665322211 1125567888888999999999999998653
Q ss_pred chhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHHcC
Q 000742 376 KGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNV-LDSNGDWAGALDAFQEGYRIAVEAN 454 (1313)
Q Consensus 376 ~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~-y~~~g~~~~A~~~~~kAl~i~~~~~ 454 (1313)
|..+.++..+|.+|..+|++++|+.+|++|+++.+...........+...+.+ |...|++++|..+|++|+++..
T Consensus 464 -P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p--- 539 (615)
T TIGR00990 464 -PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP--- 539 (615)
T ss_pred -CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC---
Confidence 55678999999999999999999999999999876533222222223444444 4457999999999999998731
Q ss_pred ChhHHHHHHHhhHHHHHHhhcCHHHHHHHHHHHHHHHhh
Q 000742 455 LPSVQLSALENMHYSHMIRFDNIEEARRLQHEIDKLKES 493 (1313)
Q Consensus 455 ~~~~~~~al~~L~~~~~~~~~~~~~a~~~~e~~~~l~~s 493 (1313)
....++..+|.++.. .++.++|..+.+....+..+
T Consensus 540 ---~~~~a~~~la~~~~~-~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 540 ---ECDIAVATMAQLLLQ-QGDVDEALKLFERAAELART 574 (615)
T ss_pred ---CcHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHhcc
Confidence 123477888988865 55677777777776666554
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=1.2e-27 Score=264.29 Aligned_cols=383 Identities=17% Similarity=0.098 Sum_probs=270.4
Q ss_pred CeEEecCCCCCcCCHHHHHHHhhcCCCcCEEEecCCCCCHHHHHHHHHHHHhcccCccceEEEccCCCCCHHHHHHHHhc
Q 000742 833 DEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICEC 912 (1313)
Q Consensus 833 ~~l~l~~~~l~~~~~~~l~~~L~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~~~~l~~L~Ls~n~l~~~~~~~l~~~ 912 (1313)
+.|+|++|.|.+.++..| ...++|++++|..|.++.. ..+.. ....++.|+|.+|.|+......+.-.
T Consensus 81 ~~LdlsnNkl~~id~~~f----~nl~nLq~v~l~~N~Lt~I--P~f~~------~sghl~~L~L~~N~I~sv~se~L~~l 148 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFF----YNLPNLQEVNLNKNELTRI--PRFGH------ESGHLEKLDLRHNLISSVTSEELSAL 148 (873)
T ss_pred eeeeccccccccCcHHHH----hcCCcceeeeeccchhhhc--ccccc------cccceeEEeeeccccccccHHHHHhH
Confidence 569999999988876544 3458999999999987641 11111 12347889999999988777777664
Q ss_pred ccCCCCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCCCCCChhhHH
Q 000742 913 PVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAIT 992 (1313)
Q Consensus 913 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 992 (1313)
+.|+.||||.|.|+.. --..+..-.+|++|+|++|.|+..+... |..+.+|.+|.|+.|++.+-.
T Consensus 149 ----~alrslDLSrN~is~i----~~~sfp~~~ni~~L~La~N~It~l~~~~----F~~lnsL~tlkLsrNrittLp--- 213 (873)
T KOG4194|consen 149 ----PALRSLDLSRNLISEI----PKPSFPAKVNIKKLNLASNRITTLETGH----FDSLNSLLTLKLSRNRITTLP--- 213 (873)
T ss_pred ----hhhhhhhhhhchhhcc----cCCCCCCCCCceEEeecccccccccccc----ccccchheeeecccCcccccC---
Confidence 7899999999988864 1223445557999999999998755444 556778999999999842211
Q ss_pred HHHHhhccCCccceeecCCCCCChHHHHHHHHHhhcCCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCCCh
Q 000742 993 NLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLES 1072 (1313)
Q Consensus 993 ~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 1072 (1313)
...|+++++|+.|+|..|.|.-...- .+...++|+.|.|..|.|.. +-++.+..+.++++|+|+.|+++.
T Consensus 214 --~r~Fk~L~~L~~LdLnrN~irive~l---tFqgL~Sl~nlklqrN~I~k-----L~DG~Fy~l~kme~l~L~~N~l~~ 283 (873)
T KOG4194|consen 214 --QRSFKRLPKLESLDLNRNRIRIVEGL---TFQGLPSLQNLKLQRNDISK-----LDDGAFYGLEKMEHLNLETNRLQA 283 (873)
T ss_pred --HHHhhhcchhhhhhccccceeeehhh---hhcCchhhhhhhhhhcCccc-----ccCcceeeecccceeecccchhhh
Confidence 23466789999999999987553222 23445678999999998853 445566777889999999999876
Q ss_pred hHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhcCCCCceeEEEeecCCCCHHHHHHHHHHhhcCCCccEEEccC
Q 000742 1073 TCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLAD 1152 (1313)
Q Consensus 1073 ~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~ 1152 (1313)
.. ..++.+++.|+.|+||+|.|....+....- ..+|++|+|++|+|+.. -..+|..+..|++|+|++
T Consensus 284 vn----~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf-----tqkL~~LdLs~N~i~~l----~~~sf~~L~~Le~LnLs~ 350 (873)
T KOG4194|consen 284 VN----EGWLFGLTSLEQLDLSYNAIQRIHIDSWSF-----TQKLKELDLSSNRITRL----DEGSFRVLSQLEELNLSH 350 (873)
T ss_pred hh----cccccccchhhhhccchhhhheeecchhhh-----cccceeEeccccccccC----ChhHHHHHHHhhhhcccc
Confidence 52 234567889999999999887544433221 12599999999998854 345677788899999999
Q ss_pred CCCChh--hhhhhcccccccCCcccccccccccccccccccccccccCCCCcccccccCCccchhhhccccCCCCccccc
Q 000742 1153 NASKEL--TLQQNLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIRVESAASGFDNSCTSSC 1230 (1313)
Q Consensus 1153 N~i~~~--~~~~~l~~l~~~~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L 1230 (1313)
|.|+.. +....+.+|+.++|++|.++. |.+.....|.++++|+.|+|.+|+|+.++.. .+.+...|
T Consensus 351 Nsi~~l~e~af~~lssL~~LdLr~N~ls~---------~IEDaa~~f~gl~~LrkL~l~gNqlk~I~kr---Afsgl~~L 418 (873)
T KOG4194|consen 351 NSIDHLAEGAFVGLSSLHKLDLRSNELSW---------CIEDAAVAFNGLPSLRKLRLTGNQLKSIPKR---AFSGLEAL 418 (873)
T ss_pred cchHHHHhhHHHHhhhhhhhcCcCCeEEE---------EEecchhhhccchhhhheeecCceeeecchh---hhccCccc
Confidence 998765 333334777778888876554 4444455677778888888888888766443 45556678
Q ss_pred ccCCccchhhHHHHHHHHhccccCceecCCC-CCCCHHHHHHHHHHHhc
Q 000742 1231 QKNSSFECQFVQELSSAIGMAKPLQLLDLSN-NGFSTQAVKTLYCAWSS 1278 (1313)
Q Consensus 1231 ~~L~Ls~n~l~~~l~~~l~~~~~L~~LdLs~-N~l~~~~~~~l~~~l~~ 1278 (1313)
+.|+|.+|.|...=|.+|..+ .|++|-+.. +-+-+-...||..=+..
T Consensus 419 E~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl~~ 466 (873)
T KOG4194|consen 419 EHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWLYR 466 (873)
T ss_pred ceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHHHHHHHh
Confidence 888888887776667777777 777777744 44455556666554443
No 10
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.93 E-value=1.6e-23 Score=242.66 Aligned_cols=291 Identities=25% Similarity=0.264 Sum_probs=159.2
Q ss_pred EEecCCCCCcCCHHHHHHHhhcCCCcCEEEecCCCCCHHHHHHHHHHHHhcccCccceEEEccCCCCCHHHHHHHHhccc
Q 000742 835 VIVSECELQDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICECPV 914 (1313)
Q Consensus 835 l~l~~~~l~~~~~~~l~~~L~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~~~~l~~L~Ls~n~l~~~~~~~l~~~l~ 914 (1313)
|+|..+.+++..+..++..+ +.|+.|+|++|.+++.++..+...+ .
T Consensus 3 l~L~~~~l~~~~~~~~~~~l---~~L~~l~l~~~~l~~~~~~~i~~~l-------------------------------~ 48 (319)
T cd00116 3 LSLKGELLKTERATELLPKL---LCLQVLRLEGNTLGEEAAKALASAL-------------------------------R 48 (319)
T ss_pred cccccCcccccchHHHHHHH---hhccEEeecCCCCcHHHHHHHHHHH-------------------------------h
Confidence 56666666655554444443 3466666666666665555555433 2
Q ss_pred CCCCcCEEEecCCCCC--hhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCCCCCChhhHH
Q 000742 915 LFTRLGVLNLSGNRLT--DACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAIT 992 (1313)
Q Consensus 915 ~~~~L~~L~Ls~n~l~--~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 992 (1313)
..++|++|+++++.++ ..++..++..+..+++|+.|+|++|.+.......+...... ++|++|++++|. +++.+..
T Consensus 49 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~-~~~~~~~ 126 (319)
T cd00116 49 PQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNG-LGDRGLR 126 (319)
T ss_pred hCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCc-cchHHHH
Confidence 2344444444444444 33344444444444455555555554443333333222222 345555555554 3333333
Q ss_pred HHHHhhccC-CccceeecCCCCCChHHHHHHHH-HhhcCCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCC
Q 000742 993 NLLVKLDTL-KSFSELNLNGLKLSKPVVDRLCQ-LAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGL 1070 (1313)
Q Consensus 993 ~~~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l~~-l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 1070 (1313)
.+...+..+ ++|+.|+|++|.+++.....+.. +..+++|++|+|++|.+++.++..++..+... ++|++|+|++|.+
T Consensus 127 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~i 205 (319)
T cd00116 127 LLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKAN-CNLEVLDLNNNGL 205 (319)
T ss_pred HHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhC-CCCCEEeccCCcc
Confidence 344444444 45555555555555433333332 22334566666666666655555555544432 5667777777766
Q ss_pred ChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhcCCCCceeEEEeecCCCCHHHHHHHHHHhhcCCCccEEEc
Q 000742 1071 ESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNL 1150 (1313)
Q Consensus 1071 ~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L 1150 (1313)
++.++..++..+..+++|++|++++|.+++.++..++..+..+...|+.|++++|.|++.|...++..+..+++|+.|++
T Consensus 206 ~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l 285 (319)
T cd00116 206 TDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDL 285 (319)
T ss_pred ChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEEC
Confidence 66666666666666677777777777777666666666554333457777777777776666666666666667777777
Q ss_pred cCCCCChhhhhh
Q 000742 1151 ADNASKELTLQQ 1162 (1313)
Q Consensus 1151 s~N~i~~~~~~~ 1162 (1313)
++|.+++.+...
T Consensus 286 ~~N~l~~~~~~~ 297 (319)
T cd00116 286 RGNKFGEEGAQL 297 (319)
T ss_pred CCCCCcHHHHHH
Confidence 777777665443
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=4.1e-27 Score=259.98 Aligned_cols=355 Identities=21% Similarity=0.170 Sum_probs=244.5
Q ss_pred cCCCeEEecCCCCCcCCHHHHHHHhhcCCCcCEEEecCCCCCHHHHHHHHHHHHhcccCccceEEEccCCCCCHHHHHHH
Q 000742 830 EVEDEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQI 909 (1313)
Q Consensus 830 ~~~~~l~l~~~~l~~~~~~~l~~~L~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~~~~l~~L~Ls~n~l~~~~~~~l 909 (1313)
..++++.+..|.|+.+ ++.-....+|+.|+|.+|.|+....+.|+.+ +.+++||||.|.|+......+
T Consensus 102 ~nLq~v~l~~N~Lt~I-----P~f~~~sghl~~L~L~~N~I~sv~se~L~~l-------~alrslDLSrN~is~i~~~sf 169 (873)
T KOG4194|consen 102 PNLQEVNLNKNELTRI-----PRFGHESGHLEKLDLRHNLISSVTSEELSAL-------PALRSLDLSRNLISEIPKPSF 169 (873)
T ss_pred Ccceeeeeccchhhhc-----ccccccccceeEEeeeccccccccHHHHHhH-------hhhhhhhhhhchhhcccCCCC
Confidence 3345588888877654 3333334578999999998877666666652 346888999998877766555
Q ss_pred HhcccCCCCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCCCCCChh
Q 000742 910 CECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGN 989 (1313)
Q Consensus 910 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 989 (1313)
... .+|++|+|++|.|++.+. ..|..+.+|.+|.|+.|.|+. .-..+|+++++|+.|+|..|.+-..+
T Consensus 170 p~~----~ni~~L~La~N~It~l~~----~~F~~lnsL~tlkLsrNritt----Lp~r~Fk~L~~L~~LdLnrN~irive 237 (873)
T KOG4194|consen 170 PAK----VNIKKLNLASNRITTLET----GHFDSLNSLLTLKLSRNRITT----LPQRSFKRLPKLESLDLNRNRIRIVE 237 (873)
T ss_pred CCC----CCceEEeecccccccccc----ccccccchheeeecccCcccc----cCHHHhhhcchhhhhhccccceeeeh
Confidence 543 689999999999887633 345556688899999998885 33345677889999999988841111
Q ss_pred hHHHHHHhhccCCccceeecCCCCCChHHHHHHHHHhhcCCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCC
Q 000742 990 AITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCG 1069 (1313)
Q Consensus 990 ~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 1069 (1313)
...|..+++|+.|.|..|++....-..|.. +..+++|+|+.|++.. +.++-..+++.|+.|+||+|.
T Consensus 238 -----~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~---l~kme~l~L~~N~l~~-----vn~g~lfgLt~L~~L~lS~Na 304 (873)
T KOG4194|consen 238 -----GLTFQGLPSLQNLKLQRNDISKLDDGAFYG---LEKMEHLNLETNRLQA-----VNEGWLFGLTSLEQLDLSYNA 304 (873)
T ss_pred -----hhhhcCchhhhhhhhhhcCcccccCcceee---ecccceeecccchhhh-----hhcccccccchhhhhccchhh
Confidence 123567888888999888876544443333 3558899999988853 333334566789999999998
Q ss_pred CChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhcCCCCceeEEEeecCCCCHHHHHHHHHHhhcCCCccEEE
Q 000742 1070 LESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELN 1149 (1313)
Q Consensus 1070 l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~ 1149 (1313)
|.... ......+++|++||||+|.|+......+..+- .|++|+|++|.|+.. --.+|..+++|++||
T Consensus 305 I~rih----~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~-----~Le~LnLs~Nsi~~l----~e~af~~lssL~~Ld 371 (873)
T KOG4194|consen 305 IQRIH----IDSWSFTQKLKELDLSSNRITRLDEGSFRVLS-----QLEELNLSHNSIDHL----AEGAFVGLSSLHKLD 371 (873)
T ss_pred hheee----cchhhhcccceeEeccccccccCChhHHHHHH-----HhhhhcccccchHHH----HhhHHHHhhhhhhhc
Confidence 87663 23456788899999999988855555554432 388899999988743 123467788899999
Q ss_pred ccCCCCC----hh-hhhhhcccccccCCcccccccccccccccccccccccccCCCCcccccccCCccchhhhccccCCC
Q 000742 1150 LADNASK----EL-TLQQNLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIRVESAASGFDN 1224 (1313)
Q Consensus 1150 Ls~N~i~----~~-~~~~~l~~l~~~~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 1224 (1313)
|++|.|. |. +...-+.+|+.+.|.+|++.+++. ..|.++..||.|||.+|.|..+-+. . +
T Consensus 372 Lr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~k------------rAfsgl~~LE~LdL~~NaiaSIq~n-A--F 436 (873)
T KOG4194|consen 372 LRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPK------------RAFSGLEALEHLDLGDNAIASIQPN-A--F 436 (873)
T ss_pred CcCCeEEEEEecchhhhccchhhhheeecCceeeecch------------hhhccCcccceecCCCCcceeeccc-c--c
Confidence 9999854 32 222224677788899999888876 6688889999999999988766332 1 1
Q ss_pred CcccccccCCccchhhH-----HHHHHHHhc
Q 000742 1225 SCTSSCQKNSSFECQFV-----QELSSAIGM 1250 (1313)
Q Consensus 1225 ~~~~~L~~L~Ls~n~l~-----~~l~~~l~~ 1250 (1313)
. ...|++|.+..-.|. .-++.||..
T Consensus 437 e-~m~Lk~Lv~nSssflCDCql~Wl~qWl~~ 466 (873)
T KOG4194|consen 437 E-PMELKELVMNSSSFLCDCQLKWLAQWLYR 466 (873)
T ss_pred c-cchhhhhhhcccceEEeccHHHHHHHHHh
Confidence 1 126777766443322 335556554
No 12
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.92 E-value=2.7e-23 Score=240.63 Aligned_cols=308 Identities=25% Similarity=0.251 Sum_probs=216.9
Q ss_pred HHhcCCCchHHHHHHHhhccCCCeEEecCCCCCcCCHHHHHHHhhcCCCcCEEEecCCCCC--HHHHHHHHHHHHhcccC
Q 000742 811 CKELSEAPNMKLLKKLYISEVEDEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLLG--NGTMEKLQQFFISSCQN 888 (1313)
Q Consensus 811 c~~l~~~~~~~~l~~l~~~~~~~~l~l~~~~l~~~~~~~l~~~L~~~~~L~~L~Ls~n~l~--~~~~~~L~~~l~~~~~~ 888 (1313)
|..++...+..++..+..+ +.+++++|.+++.++..+...+...++|+.|+++++.++ ..++..+...+.. .
T Consensus 7 ~~~l~~~~~~~~~~~l~~L---~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~---~ 80 (319)
T cd00116 7 GELLKTERATELLPKLLCL---QVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK---G 80 (319)
T ss_pred cCcccccchHHHHHHHhhc---cEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHh---c
Confidence 3345556677777777664 559999999999888889999988899999999999988 5666666655442 5
Q ss_pred ccceEEEccCCCCCHHHHHHHHhcccCCCCcCEEEecCCCCChhHHHHHHHHHhcC-CCCcEEEeecCCCCHHHHHHHHH
Q 000742 889 YVDLTLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNC-KVLYSLNIENCSITSRTIQKVAD 967 (1313)
Q Consensus 889 ~~l~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~ 967 (1313)
.+++.|+|++|.+.......+..+... ++|++|+|++|.+++.++..+...+..+ ++|+.|+|++|.++..+...+..
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 567888888888876666566555333 5688888888888877777777777777 78888888888888777777777
Q ss_pred HHhcCCCccEEEeCCCCCCChhhHHHHHHhhccCCccceeecCCCCCChHHHHHHHHH-hhcCCccEEEccCCCCCCchH
Q 000742 968 ALGAESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQL-AKTSCLTHLMLGCTNLGSDGS 1046 (1313)
Q Consensus 968 ~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~l-~~~~~L~~L~Ls~n~i~~~~~ 1046 (1313)
.+..+++|++|+|++|. +++.++..++..+..+++|+.|+|++|.+++.....+... ..+++|++|++++|.+++.++
T Consensus 160 ~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~ 238 (319)
T cd00116 160 ALRANRDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA 238 (319)
T ss_pred HHHhCCCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH
Confidence 77777788888888887 5555566666666666777777777777776665555442 335667777777777766666
Q ss_pred HHHHHHHhcCCCcccEEEccCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhcCCCCceeEEEeecCC
Q 000742 1047 LQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQ 1126 (1313)
Q Consensus 1047 ~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 1126 (1313)
..++..+....+.|++|++++|.+++.+...++..+..+++|++|++++|.+++.+...++..+..+.+.|++|++.+|.
T Consensus 239 ~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 239 AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 66665554434566666666666666666666666666666666666666666666666666665543456666666554
No 13
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.92 E-value=6.3e-23 Score=273.97 Aligned_cols=430 Identities=13% Similarity=0.054 Sum_probs=321.2
Q ss_pred hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCC--------chhHHHHHHH
Q 000742 5 EMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKH--------LLPTCQSLGE 76 (1313)
Q Consensus 5 ~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~--------~~~~~~~lg~ 76 (1313)
.|++++|+..|+++++..|....+ +..+|.+|...|++++|+.+|+++++..+....... .......+|.
T Consensus 282 ~g~~~~A~~~l~~aL~~~P~~~~a--~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~ 359 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRANPKDSEA--LGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGD 359 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHH
Confidence 578999999999999999987666 899999999999999999999999988754321100 1123345688
Q ss_pred HHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCC
Q 000742 77 VYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPAT 156 (1313)
Q Consensus 77 ~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~ 156 (1313)
++...|++++|+.+| ++++++.|... .++..+|.+|... |++++|+.+|++++++
T Consensus 360 ~~~~~g~~~eA~~~~-~~Al~~~P~~~------~a~~~Lg~~~~~~--------g~~~eA~~~y~~aL~~---------- 414 (1157)
T PRK11447 360 AALKANNLAQAERLY-QQARQVDNTDS------YAVLGLGDVAMAR--------KDYAAAERYYQQALRM---------- 414 (1157)
T ss_pred HHHHCCCHHHHHHHH-HHHHHhCCCCH------HHHHHHHHHHHHC--------CCHHHHHHHHHHHHHh----------
Confidence 999999999999999 99999876442 5788999999988 9999999999999988
Q ss_pred CcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000742 157 SRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDI 236 (1313)
Q Consensus 157 ~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal 236 (1313)
.|....++..++.+|.. +++++|+.++++.....++.............+..+|.++...|++++|++.|++++
T Consensus 415 -----~p~~~~a~~~L~~l~~~-~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al 488 (1157)
T PRK11447 415 -----DPGNTNAVRGLANLYRQ-QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRL 488 (1157)
T ss_pred -----CCCCHHHHHHHHHHHHh-cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 23445678889998864 678999998876543321100000011224467789999999999999999999999
Q ss_pred HHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHH--HH
Q 000742 237 IICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKE--EQ 314 (1313)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~--~~ 314 (1313)
++.+ ....+++.+|.+|...|++++|+..++++++..|.........+..+...++..+|+..++++... .+
T Consensus 489 ~~~P------~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~ 562 (1157)
T PRK11447 489 ALDP------GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNS 562 (1157)
T ss_pred HhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcCh
Confidence 9876 667889999999999999999999999999988766555444454555566667777766653210 00
Q ss_pred HHHH-----------HHHHHHHhhCCchHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhh
Q 000742 315 NLKK-----------LTRNMIIAKGTSQERKYLLQQN----ASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKL 379 (1313)
Q Consensus 315 ~~~~-----------l~~~l~~~~~~~~~a~~~~~~~----~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~ 379 (1313)
.+.. .........+..+++..+++.. ..+..++..+...+++++|++.|++++... |..
T Consensus 563 ~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~------P~~ 636 (1157)
T PRK11447 563 NIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE------PGN 636 (1157)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCC
Confidence 0000 0111223455666666666532 345678899999999999999999998753 556
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHH
Q 000742 380 SDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQ 459 (1313)
Q Consensus 380 a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~~~~ 459 (1313)
+.++..+|.+|...|++++|++.|+++++.. +....++..+|.++...|++++|+.+|++++....+.......
T Consensus 637 ~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~ 710 (1157)
T PRK11447 637 ADARLGLIEVDIAQGDLAAARAQLAKLPATA------NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMES 710 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhccC------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhh
Confidence 7899999999999999999999999887653 3455678889999999999999999999999876443322234
Q ss_pred HHHHHhhHHHHHHhhcCHHHHHHHHHH
Q 000742 460 LSALENMHYSHMIRFDNIEEARRLQHE 486 (1313)
Q Consensus 460 ~~al~~L~~~~~~~~~~~~~a~~~~e~ 486 (1313)
..++..++.++... ++.++|..+++.
T Consensus 711 a~~~~~~a~~~~~~-G~~~~A~~~y~~ 736 (1157)
T PRK11447 711 ALVLRDAARFEAQT-GQPQQALETYKD 736 (1157)
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 55677778777544 444444444443
No 14
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.91 E-value=8.3e-24 Score=222.50 Aligned_cols=328 Identities=20% Similarity=0.207 Sum_probs=286.4
Q ss_pred cCCCeEEecCCCCCcCCHHHHHHHhhcCCCcCEEEecCCCC---CHHH---HHHHHHHHHhcccCccceEEEccCCCCCH
Q 000742 830 EVEDEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLL---GNGT---MEKLQQFFISSCQNYVDLTLDLHCNRFGP 903 (1313)
Q Consensus 830 ~~~~~l~l~~~~l~~~~~~~l~~~L~~~~~L~~L~Ls~n~l---~~~~---~~~L~~~l~~~~~~~~l~~L~Ls~n~l~~ 903 (1313)
.....|+|++|.++......++..|...+.|+..++|+-.. .++. +..|.+.+. ..+.|++||||.|.|++
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~---~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALL---GCPKLQKLDLSDNAFGP 106 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHh---cCCceeEeeccccccCc
Confidence 33577999999999999999999999999999999998653 3333 444444443 34478999999999999
Q ss_pred HHHHHHHhcccCCCCcCEEEecCCCCChhHHHHHHHHHh---------cCCCCcEEEeecCCCCHHHHHHHHHHHhcCCC
Q 000742 904 TTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILK---------NCKVLYSLNIENCSITSRTIQKVADALGAEST 974 (1313)
Q Consensus 904 ~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~---------~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~ 974 (1313)
.++..|..++..+.+|++|.|.+|.++..|...|+.+|. ..+.|+++...+|.+.+.+...++.+|..++.
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~ 186 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT 186 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence 999999999999999999999999999999988777543 34579999999999999999999999999999
Q ss_pred ccEEEeCCCCCCChhhHHHHHHhhccCCccceeecCCCCCChHHHHHHHHHhh-cCCccEEEccCCCCCCchHHHHHHHH
Q 000742 975 LAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAK-TSCLTHLMLGCTNLGSDGSLQLVESL 1053 (1313)
Q Consensus 975 L~~L~Ls~n~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~-~~~L~~L~Ls~n~i~~~~~~~l~~~l 1053 (1313)
|+.+.++.|. +...++..+...+..|++|+.|||.+|-++..+...++...+ .++|++|++++|.+.+.|...+..++
T Consensus 187 leevr~~qN~-I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al 265 (382)
T KOG1909|consen 187 LEEVRLSQNG-IRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL 265 (382)
T ss_pred cceEEEeccc-ccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence 9999999999 677777888899999999999999999999999988887544 67799999999999999999999999
Q ss_pred hcCCCcccEEEccCCCCChhHHHHHHHHHhcCCCccEEEccCCCC--ChHHHHHHHHHhcCCCCceeEEEeecCCCCHHH
Q 000742 1054 FSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPI--MKEGANALASLLMNPQCCLKVLVLSKCQLGLAG 1131 (1313)
Q Consensus 1054 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i--~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g 1131 (1313)
....++|+.|.|.+|.|+..+...+..++...+.|..|+|++|.+ .+.++..+...+......+...+.+.+.+...|
T Consensus 266 ~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~e~de~i~ei~~~~~~~~~~~~~~~~s~e~l~~eg 345 (382)
T KOG1909|consen 266 KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLGEKDEGIDEIASKFDTAHVLLEDIDDSEEELEREG 345 (382)
T ss_pred hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccccccchhHHHHHHhcccccccchhhchhHHHHHhhh
Confidence 988899999999999999999999988888899999999999999 788888888887443334777888999999999
Q ss_pred HHHHHHHhhcCCCccEEEccCCCCChhhhh
Q 000742 1132 VLQLIKALSENDTLEELNLADNASKELTLQ 1161 (1313)
Q Consensus 1132 ~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~ 1161 (1313)
............+=+.++..+|.+.+.+..
T Consensus 346 ~e~e~~~~~~~~t~~e~~ed~e~ie~e~~e 375 (382)
T KOG1909|consen 346 EEDEEEEVEKKETFKELNEDGEVIEEEGIE 375 (382)
T ss_pred hhHHHHHHHhcCcchhhcccccccchhHHH
Confidence 988888888888888899999988887654
No 15
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.90 E-value=1.8e-21 Score=259.91 Aligned_cols=409 Identities=16% Similarity=0.164 Sum_probs=232.6
Q ss_pred hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccCh
Q 000742 5 EMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHF 84 (1313)
Q Consensus 5 ~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~ 84 (1313)
.|++++|...+++.....+..... +..+|.+|...|++++|+++|+++++..+ ....++..+|.++...|++
T Consensus 444 ~~~~~~A~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~la~~~~~~g~~ 515 (899)
T TIGR02917 444 SGQFDKALAAAKKLEKKQPDNASL--HNLLGAIYLGKGDLAKAREAFEKALSIEP------DFFPAAANLARIDIQEGNP 515 (899)
T ss_pred cCCHHHHHHHHHHHHHhCCCCcHH--HHHHHHHHHhCCCHHHHHHHHHHHHhhCC------CcHHHHHHHHHHHHHCCCH
Confidence 467778888888777766665444 77788888888888888888888776542 2256677778888888888
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHH
Q 000742 85 KDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKE 164 (1313)
Q Consensus 85 ~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~ 164 (1313)
++|..++ +++++..|.. ..++..++.+|... |++++|+.++++++... |.
T Consensus 516 ~~A~~~~-~~~~~~~~~~------~~~~~~l~~~~~~~--------~~~~~A~~~~~~~~~~~---------------~~ 565 (899)
T TIGR02917 516 DDAIQRF-EKVLTIDPKN------LRAILALAGLYLRT--------GNEEEAVAWLEKAAELN---------------PQ 565 (899)
T ss_pred HHHHHHH-HHHHHhCcCc------HHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhC---------------cc
Confidence 8888887 7777665433 24566677777655 67777777777765541 12
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhch
Q 000742 165 YIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEH 244 (1313)
Q Consensus 165 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~ 244 (1313)
....+..++..|...|++++|+.+++++++..+. ...++..+|.+|...|++++|+..|+++++..+
T Consensus 566 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---- 632 (899)
T TIGR02917 566 EIEPALALAQYYLGKGQLKKALAILNEAADAAPD---------SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP---- 632 (899)
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----
Confidence 2344555555555555555555555555543211 233455555555555555555555555555432
Q ss_pred hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHH---------------------------------
Q 000742 245 CQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQ--------------------------------- 291 (1313)
Q Consensus 245 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~--------------------------------- 291 (1313)
....++..+|.+|...|++++|+.+|+++++..|.........+.
T Consensus 633 --~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 710 (899)
T TIGR02917 633 --DSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEG 710 (899)
T ss_pred --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHH
Confidence 334455555555555555555555555555554443333333333
Q ss_pred -HHHhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhCCchHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Q 000742 292 -IDQNIETVKKAIEVMDELKKEEQNLK--KLTRNMIIAKGTSQERKYLLQQN--------ASLDRLIEKSSMIFAWLKHC 360 (1313)
Q Consensus 292 -~~~~lg~~~~a~~~~~~a~~~~~~~~--~l~~~l~~~~~~~~~a~~~~~~~--------~~l~~L~~~~~~~~~~~~A~ 360 (1313)
++...|++.+|+..|.++....+... ..........+..+++...++.. ..+..++..+...+++++|.
T Consensus 711 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~ 790 (899)
T TIGR02917 711 DLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAI 790 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 34444444444444444432211110 00111112233444444333332 23344555566666666666
Q ss_pred HHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 000742 361 EYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGAL 440 (1313)
Q Consensus 361 ~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~ 440 (1313)
.++++++... |..+.++..+|.+|...|+ .+|+.++++++++.+ ....++..+|.+|...|++++|+
T Consensus 791 ~~~~~~~~~~------p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~~~A~ 857 (899)
T TIGR02917 791 KHYRTVVKKA------PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP------NIPAILDTLGWLLVEKGEADRAL 857 (899)
T ss_pred HHHHHHHHhC------CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC------CCcHHHHHHHHHHHHcCCHHHHH
Confidence 6666665432 3344566666666666666 666666666665432 33445667777777788888888
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHhhHHHHHHhhcCHHHHHHHHHH
Q 000742 441 DAFQEGYRIAVEANLPSVQLSALENMHYSHMIRFDNIEEARRLQHE 486 (1313)
Q Consensus 441 ~~~~kAl~i~~~~~~~~~~~~al~~L~~~~~~~~~~~~~a~~~~e~ 486 (1313)
.+|++++++... ...++.+++.++... ++.++|..+.+.
T Consensus 858 ~~~~~a~~~~~~------~~~~~~~l~~~~~~~-g~~~~A~~~~~~ 896 (899)
T TIGR02917 858 PLLRKAVNIAPE------AAAIRYHLALALLAT-GRKAEARKELDK 896 (899)
T ss_pred HHHHHHHhhCCC------ChHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 888877775421 334666777666443 444555554443
No 16
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.90 E-value=7.1e-23 Score=215.53 Aligned_cols=297 Identities=21% Similarity=0.226 Sum_probs=249.1
Q ss_pred CcCCHHHHHHHhhcCCCcCEEEecCCCCCHHHHHHHHHHHHhcccCccceEEEccCC---CCCHH---HHHHHHhcccCC
Q 000742 843 QDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCN---RFGPT---TLFQICECPVLF 916 (1313)
Q Consensus 843 ~~~~~~~l~~~L~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~~~~l~~L~Ls~n---~l~~~---~~~~l~~~l~~~ 916 (1313)
+..+...+...+....+++.|+||+|.++.+.++.+++.+.+. ..|+..++|+- ++... .+..+...+..+
T Consensus 15 t~ed~~~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~---~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~ 91 (382)
T KOG1909|consen 15 TEEDEKDVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASK---KELREVNLSDMFTGRLKDEIPEALKMLSKALLGC 91 (382)
T ss_pred hHhhhhhHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhc---ccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcC
Confidence 3445667777788888999999999999999999999987753 36788887764 33333 334566667778
Q ss_pred CCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCCCCCChhhHHHHHH
Q 000742 917 TRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLV 996 (1313)
Q Consensus 917 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 996 (1313)
+.|+.||||.|-|+..|++.+...+.+|.+|++|.|.+|+++..+...++.+|..+. .|.
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~--------~~k------------ 151 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELA--------VNK------------ 151 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHH--------HHh------------
Confidence 899999999999999999999999999999999999999999999999888776432 111
Q ss_pred hhccCCccceeecCCCCCChHHHHHHHHHhh-cCCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCCChhHH
Q 000742 997 KLDTLKSFSELNLNGLKLSKPVVDRLCQLAK-TSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCI 1075 (1313)
Q Consensus 997 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~-~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 1075 (1313)
....-+.|+.+..+.|.+.+.+...++...+ .++|+.+.++.|.|...|+..++.++.. +++|+.|||.+|.++..|.
T Consensus 152 k~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~-~~~LevLdl~DNtft~egs 230 (382)
T KOG1909|consen 152 KAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEH-CPHLEVLDLRDNTFTLEGS 230 (382)
T ss_pred ccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHh-CCcceeeecccchhhhHHH
Confidence 1234457788888888887777777766444 5689999999999999999888888875 4899999999999999999
Q ss_pred HHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhcCCCCceeEEEeecCCCCHHHHHHHHHHhhcCCCccEEEccCCCC
Q 000742 1076 HKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNAS 1155 (1313)
Q Consensus 1076 ~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~N~i 1155 (1313)
..++..++.+++|++|++++|.+.+.|..++...+.....+|++|.|.+|.|+..+...+..++...+.|..|+|++|.+
T Consensus 231 ~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 231 VALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 99999999999999999999999999999999999876678999999999999999999999999999999999999999
Q ss_pred --Chhhhhhh
Q 000742 1156 --KELTLQQN 1163 (1313)
Q Consensus 1156 --~~~~~~~~ 1163 (1313)
.+.++..+
T Consensus 311 ~e~de~i~ei 320 (382)
T KOG1909|consen 311 GEKDEGIDEI 320 (382)
T ss_pred cccchhHHHH
Confidence 55555544
No 17
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.90 E-value=4.1e-21 Score=256.55 Aligned_cols=380 Identities=13% Similarity=0.097 Sum_probs=289.5
Q ss_pred chhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccC
Q 000742 4 DEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEH 83 (1313)
Q Consensus 4 ~~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 83 (1313)
..+++++|++.++++.+..+....+ ...++..|...|++++|++.+++..... +....++..+|.+|...|+
T Consensus 409 ~~~~~~~A~~~~~~a~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~ 480 (899)
T TIGR02917 409 SQGDPSEAIADLETAAQLDPELGRA--DLLLILSYLRSGQFDKALAAAKKLEKKQ------PDNASLHNLLGAIYLGKGD 480 (899)
T ss_pred hCCChHHHHHHHHHHHhhCCcchhh--HHHHHHHHHhcCCHHHHHHHHHHHHHhC------CCCcHHHHHHHHHHHhCCC
Confidence 4578999999999999998876665 6688999999999999999999987654 2336789999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhH
Q 000742 84 FKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLK 163 (1313)
Q Consensus 84 ~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p 163 (1313)
+++|+.+| +++++..+... .++..+|.++... |++++|+.+|+++++. .|
T Consensus 481 ~~~A~~~~-~~a~~~~~~~~------~~~~~la~~~~~~--------g~~~~A~~~~~~~~~~---------------~~ 530 (899)
T TIGR02917 481 LAKAREAF-EKALSIEPDFF------PAAANLARIDIQE--------GNPDDAIQRFEKVLTI---------------DP 530 (899)
T ss_pred HHHHHHHH-HHHHhhCCCcH------HHHHHHHHHHHHC--------CCHHHHHHHHHHHHHh---------------Cc
Confidence 99999999 99998765432 4678999999977 9999999999999876 23
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000742 164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIE 243 (1313)
Q Consensus 164 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~ 243 (1313)
....++..++.++...|++++|+.++++++...+. ....+..++.+|...|++++|+.++++++...+
T Consensus 531 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--- 598 (899)
T TIGR02917 531 KNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ---------EIEPALALAQYYLGKGQLKKALAILNEAADAAP--- 598 (899)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---------chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC---
Confidence 44678999999999999999999999999887332 456788899999999999999999999987654
Q ss_pred hhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHH
Q 000742 244 HCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLK---KLT 320 (1313)
Q Consensus 244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~---~l~ 320 (1313)
....++..+|.+|...|++++|+.+|+++++..+.........+.++...|++.+|...++++....+... ...
T Consensus 599 ---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 675 (899)
T TIGR02917 599 ---DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGL 675 (899)
T ss_pred ---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 56778999999999999999999999999999887777777788899999999999999999876544322 122
Q ss_pred HHHHHhhCCchHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHH
Q 000742 321 RNMIIAKGTSQERKYLLQQN--------ASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQK 392 (1313)
Q Consensus 321 ~~l~~~~~~~~~a~~~~~~~--------~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~ 392 (1313)
..+....+..+++..+++.. ..+..++..+...++|++|.+++++++..... . ..+..+|.+|..
T Consensus 676 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~------~-~~~~~l~~~~~~ 748 (899)
T TIGR02917 676 AQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS------S-QNAIKLHRALLA 748 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC------c-hHHHHHHHHHHH
Confidence 22334455666666655543 33455677777778888888888777654211 1 344455555555
Q ss_pred hhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000742 393 LRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRI 449 (1313)
Q Consensus 393 ~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i 449 (1313)
.|++++|+..++++++..+ ....++..+|.+|...|++++|+.+|+++++.
T Consensus 749 ~g~~~~A~~~~~~~l~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 749 SGNTAEAVKTLEAWLKTHP------NDAVLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred CCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 5555555555555554322 23345555555555555555555555555543
No 18
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=8.8e-21 Score=206.15 Aligned_cols=393 Identities=13% Similarity=0.085 Sum_probs=293.5
Q ss_pred chhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccC
Q 000742 4 DEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEH 83 (1313)
Q Consensus 4 ~~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 83 (1313)
.++.|++|+++|.+|++..|+.... |.+++-+|...|+|++.++...+|+++.+++ ..+++..+.++..+|+
T Consensus 127 ~~kkY~eAIkyY~~AI~l~p~epiF--YsNraAcY~~lgd~~~Vied~TkALEl~P~Y------~KAl~RRA~A~E~lg~ 198 (606)
T KOG0547|consen 127 RNKKYDEAIKYYTQAIELCPDEPIF--YSNRAACYESLGDWEKVIEDCTKALELNPDY------VKALLRRASAHEQLGK 198 (606)
T ss_pred hcccHHHHHHHHHHHHhcCCCCchh--hhhHHHHHHHHhhHHHHHHHHHHHhhcCcHH------HHHHHHHHHHHHhhcc
Confidence 3578999999999999999986554 8899999999999999999999999998665 8999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHH---HHHHHHH----------------------HHHHHHhc---------cCCc-
Q 000742 84 FKDALIYQVKKHLELAKDASDLVEQQ---RACTQLG----------------------RTYYEMFL---------RSDD- 128 (1313)
Q Consensus 84 ~~~A~~~~~~kal~l~~~~~~~~~~a---~a~~~lg----------------------~~y~~l~~---------~~~~- 128 (1313)
+++|+... .++-+.....+..... +.+...| ..|...|. .+..
T Consensus 199 ~~eal~D~--tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ks 276 (606)
T KOG0547|consen 199 FDEALFDV--TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKS 276 (606)
T ss_pred HHHHHHhh--hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccc
Confidence 99998754 2222222221111000 0111111 11111110 0000
Q ss_pred --------------chhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000742 129 --------------DHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLE 194 (1313)
Q Consensus 129 --------------~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 194 (1313)
....|.+|..++.+.............. ..-...++.++...|..++-.|++-.|...|+++++
T Consensus 277 Da~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~--d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 277 DAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEI--DAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred hhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhcccccc--chhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 1123444555554444433322111100 111257799999999999999999999999999999
Q ss_pred HhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 000742 195 ICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQK 274 (1313)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~k 274 (1313)
+.+. ....|..+|.+|....+.++-..+|.+|..+.+ ..+.+|+..|++++-+++|++|+.-|++
T Consensus 355 l~~~---------~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp------~n~dvYyHRgQm~flL~q~e~A~aDF~K 419 (606)
T KOG0547|consen 355 LDPA---------FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDP------ENPDVYYHRGQMRFLLQQYEEAIADFQK 419 (606)
T ss_pred cCcc---------cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCC------CCCchhHhHHHHHHHHHHHHHHHHHHHH
Confidence 8554 334589999999999999999999999999977 7888999999999999999999999999
Q ss_pred HHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 000742 275 ALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIF 354 (1313)
Q Consensus 275 al~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~ 354 (1313)
|+.+.|...-.+.....+.+..+.+.+++..|++++..++..... +.-.+++....+
T Consensus 420 ai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Ev-----------------------y~~fAeiLtDqq 476 (606)
T KOG0547|consen 420 AISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEV-----------------------YNLFAEILTDQQ 476 (606)
T ss_pred HhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchH-----------------------HHHHHHHHhhHH
Confidence 999999988888888888889999999999999998776666554 445566667789
Q ss_pred HHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHc
Q 000742 355 AWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESY-QKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSN 433 (1313)
Q Consensus 355 ~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y-~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~ 433 (1313)
+|++|.+.|..++.+..........+..+...|.+. .-.+++.+|+..++||+++++ .-..++..||.+..++
T Consensus 477 qFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dp------kce~A~~tlaq~~lQ~ 550 (606)
T KOG0547|consen 477 QFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDP------KCEQAYETLAQFELQR 550 (606)
T ss_pred hHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCc------hHHHHHHHHHHHHHHH
Confidence 999999999999998765322211222233333222 234899999999999998876 4456799999999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 000742 434 GDWAGALDAFQEGYRIAVE 452 (1313)
Q Consensus 434 g~~~~A~~~~~kAl~i~~~ 452 (1313)
|+.++|+++|++++.+++.
T Consensus 551 ~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 551 GKIDEAIELFEKSAQLART 569 (606)
T ss_pred hhHHHHHHHHHHHHHHHHh
Confidence 9999999999999999876
No 19
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.89 E-value=1.1e-20 Score=252.53 Aligned_cols=395 Identities=13% Similarity=0.064 Sum_probs=293.1
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHH-----
Q 000742 33 VIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVE----- 107 (1313)
Q Consensus 33 ~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~----- 107 (1313)
.+|..+...|++++|+..|+++++..+. ...++..+|.+|..+|++++|+.+| +++++..++......
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~------~~~a~~~Lg~~~~~~g~~~eA~~~l-~~Al~~~p~~~~~~~~~~ll 346 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPK------DSEALGALGQAYSQQGDRARAVAQF-EKALALDPHSSNRDKWESLL 346 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHhCCCccchhHHHHHH
Confidence 5689999999999999999999998633 3789999999999999999999999 999998876543210
Q ss_pred ---HHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHH
Q 000742 108 ---QQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEE 184 (1313)
Q Consensus 108 ---~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~ 184 (1313)
.......+|.++... |++++|+..|++++++ .|..+.++..+|.+|...|++++
T Consensus 347 ~~~~~~~~~~~g~~~~~~--------g~~~eA~~~~~~Al~~---------------~P~~~~a~~~Lg~~~~~~g~~~e 403 (1157)
T PRK11447 347 KVNRYWLLIQQGDAALKA--------NNLAQAERLYQQARQV---------------DNTDSYAVLGLGDVAMARKDYAA 403 (1157)
T ss_pred HhhhHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHCCCHHH
Confidence 112234557777766 9999999999999988 23446789999999999999999
Q ss_pred HHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-c--hhhhHHHHHHHHHHHHHH
Q 000742 185 AKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKI-E--HCQGEAKGYINLGELHYR 261 (1313)
Q Consensus 185 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~-~--~~~~~~~~~~~la~~~~~ 261 (1313)
|+++|++++++.+. ...++..++.+|. .+++++|+.++++.....++. . ........+..+|.++..
T Consensus 404 A~~~y~~aL~~~p~---------~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~ 473 (1157)
T PRK11447 404 AERYYQQALRMDPG---------NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALEN 473 (1157)
T ss_pred HHHHHHHHHHhCCC---------CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 99999999998433 3567888999885 467899999987654432211 0 011224567789999999
Q ss_pred hcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhCCchHHHHHHH
Q 000742 262 VQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLT---RNMIIAKGTSQERKYLLQ 338 (1313)
Q Consensus 262 ~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~---~~l~~~~~~~~~a~~~~~ 338 (1313)
.|++++|+.+|++++++.|........++.++...|++.+|...++++....+...... .......+..+++...++
T Consensus 474 ~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~ 553 (1157)
T PRK11447 474 QGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLN 553 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999988776667778888888999999998888875433211111 111122334444444333
Q ss_pred HH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHH
Q 000742 339 QN------------------ASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAI 400 (1313)
Q Consensus 339 ~~------------------~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~ 400 (1313)
.. ...-.++..+...+++++|+..++ ..|..+.++..+|.+|.++|++++|+
T Consensus 554 ~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~----------~~p~~~~~~~~La~~~~~~g~~~~A~ 623 (1157)
T PRK11447 554 TLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR----------QQPPSTRIDLTLADWAQQRGDYAAAR 623 (1157)
T ss_pred hCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH----------hCCCCchHHHHHHHHHHHcCCHHHHH
Confidence 21 011233455566667777766554 23556678899999999999999999
Q ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhHHHHHHhhcCHHHH
Q 000742 401 KWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMIRFDNIEEA 480 (1313)
Q Consensus 401 ~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~~~~~~al~~L~~~~~~~~~~~~~a 480 (1313)
..|+++++..+ ....++..+|.+|...|++++|+.+|+++++... + ...++..++.++. ..++.++|
T Consensus 624 ~~y~~al~~~P------~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p--~----~~~~~~~la~~~~-~~g~~~eA 690 (1157)
T PRK11447 624 AAYQRVLTREP------GNADARLGLIEVDIAQGDLAAARAQLAKLPATAN--D----SLNTQRRVALAWA-ALGDTAAA 690 (1157)
T ss_pred HHHHHHHHhCC------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC--C----ChHHHHHHHHHHH-hCCCHHHH
Confidence 99999998754 5567899999999999999999999998876531 1 2345667777775 45667777
Q ss_pred HHHHHHHHHH
Q 000742 481 RRLQHEIDKL 490 (1313)
Q Consensus 481 ~~~~e~~~~l 490 (1313)
..+.+.+...
T Consensus 691 ~~~~~~al~~ 700 (1157)
T PRK11447 691 QRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHhhh
Confidence 7776666544
No 20
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.88 E-value=1.2e-19 Score=213.34 Aligned_cols=387 Identities=13% Similarity=0.148 Sum_probs=297.3
Q ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHH
Q 000742 8 MSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDA 87 (1313)
Q Consensus 8 ~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A 87 (1313)
++.|.+.|....+..|++..+ +...|.+.+..|+|-.|+.+|++++.+.+... +.....+|.|+..+|+.+.|
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~--LlGkA~i~ynkkdY~~al~yyk~al~inp~~~-----aD~rIgig~Cf~kl~~~~~a 218 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILA--LLGKARIAYNKKDYRGALKYYKKALRINPACK-----ADVRIGIGHCFWKLGMSEKA 218 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHH--HHHHHHHHhccccHHHHHHHHHHHHhcCcccC-----CCccchhhhHHHhccchhhH
Confidence 688999999999999998777 88889999999999999999999999886553 44456789999999999999
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHH
Q 000742 88 LIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYID 167 (1313)
Q Consensus 88 ~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~ 167 (1313)
+..+ ++|+++.|.. +.++..||.+-... .+...+..|...+.+|... .+..+.
T Consensus 219 ~~a~-~ralqLdp~~------v~alv~L~~~~l~~-----~d~~s~~~~~~ll~~ay~~---------------n~~nP~ 271 (1018)
T KOG2002|consen 219 LLAF-ERALQLDPTC------VSALVALGEVDLNF-----NDSDSYKKGVQLLQRAYKE---------------NNENPV 271 (1018)
T ss_pred HHHH-HHHHhcChhh------HHHHHHHHHHHHHc-----cchHHHHHHHHHHHHHHhh---------------cCCCcH
Confidence 9999 9999998843 35566666665443 2335666777777776655 224468
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhh
Q 000742 168 AHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQG 247 (1313)
Q Consensus 168 ~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~ 247 (1313)
+...+|..|+..|+|+.+......|+.... ..+..+..++.+|..|..+|+|++|..||.++++..+. .
T Consensus 272 ~l~~LAn~fyfK~dy~~v~~la~~ai~~t~------~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d-----~ 340 (1018)
T KOG2002|consen 272 ALNHLANHFYFKKDYERVWHLAEHAIKNTE------NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADND-----N 340 (1018)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHhhh------hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCC-----C
Confidence 999999999999999999999999988743 36678899999999999999999999999999988662 3
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742 248 EAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIE----TVKKAIEVMDELKKEEQNLKKLTRNM 323 (1313)
Q Consensus 248 ~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg----~~~~a~~~~~~a~~~~~~~~~l~~~l 323 (1313)
....++.+|++|...|+++.|+.+|++.++..|........++.+|...+ ...+|..+..++....
T Consensus 341 ~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~---------- 410 (1018)
T KOG2002|consen 341 FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT---------- 410 (1018)
T ss_pred ccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc----------
Confidence 47788999999999999999999999999999988777777776666654 2233333333332111
Q ss_pred HHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHH
Q 000742 324 IIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWY 403 (1313)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~ 403 (1313)
+... ..+-.++..+....-|. ++.+|..|+.+....... ..++.+.++|..++.+|++.+|..+|
T Consensus 411 ------~~d~-------~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f 475 (1018)
T KOG2002|consen 411 ------PVDS-------EAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQ-IPPEVLNNVASLHFRLGNIEKALEHF 475 (1018)
T ss_pred ------cccH-------HHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCC-CCHHHHHhHHHHHHHhcChHHHHHHH
Confidence 1111 12333444444333333 378888888777666555 56789999999999999999999999
Q ss_pred HHHHHHHHHhCCchh----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhHHHH
Q 000742 404 TKSWEMYKSIGNLEG----QALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSH 470 (1313)
Q Consensus 404 ~kal~l~~~~~~~~~----~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~~~~~~al~~L~~~~ 470 (1313)
.+|+.......+... .....|++|.++..+++++.|.+.|...++.. +....+|.+++.+.
T Consensus 476 ~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh------p~YId~ylRl~~ma 540 (1018)
T KOG2002|consen 476 KSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH------PGYIDAYLRLGCMA 540 (1018)
T ss_pred HHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC------chhHHHHHHhhHHH
Confidence 999988543333221 24468999999999999999999999988763 33566888887444
No 21
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.88 E-value=2.6e-19 Score=210.36 Aligned_cols=412 Identities=16% Similarity=0.140 Sum_probs=237.2
Q ss_pred hhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChH
Q 000742 6 MQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFK 85 (1313)
Q Consensus 6 ~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~ 85 (1313)
..+..|...+..|-..++.++.+ +..++..|+..|+|..+...+.-|+.... .....++.++++|.+|..+|+|+
T Consensus 250 ~s~~~~~~ll~~ay~~n~~nP~~--l~~LAn~fyfK~dy~~v~~la~~ai~~t~---~~~~~aes~Y~~gRs~Ha~Gd~e 324 (1018)
T KOG2002|consen 250 DSYKKGVQLLQRAYKENNENPVA--LNHLANHFYFKKDYERVWHLAEHAIKNTE---NKSIKAESFYQLGRSYHAQGDFE 324 (1018)
T ss_pred HHHHHHHHHHHHHHhhcCCCcHH--HHHHHHHHhhcccHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHhhccHH
Confidence 44666677777777776666666 66777777778888877777777776552 22334677788888888888888
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHH
Q 000742 86 DALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEY 165 (1313)
Q Consensus 86 ~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~ 165 (1313)
+|..|| .++++..++.- ...++.+|.+|... |+++.|+.+|++.++. .|+.
T Consensus 325 kA~~yY-~~s~k~~~d~~-----~l~~~GlgQm~i~~--------~dle~s~~~fEkv~k~---------------~p~~ 375 (1018)
T KOG2002|consen 325 KAFKYY-MESLKADNDNF-----VLPLVGLGQMYIKR--------GDLEESKFCFEKVLKQ---------------LPNN 375 (1018)
T ss_pred HHHHHH-HHHHccCCCCc-----cccccchhHHHHHh--------chHHHHHHHHHHHHHh---------------Ccch
Confidence 888888 77777665541 23467777777766 7788888888777666 2344
Q ss_pred HHHHHHHHHHHHHcC----CHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000742 166 IDAHNNIGMLQMELD----NLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKK 241 (1313)
Q Consensus 166 ~~~~~~la~~y~~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~ 241 (1313)
..+...+|.+|...+ ..++|..+..++++. .+..+.+|..+|.+|....-+.. +.+|.+|+.+...
T Consensus 376 ~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~---------~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~ 445 (1018)
T KOG2002|consen 376 YETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ---------TPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILES 445 (1018)
T ss_pred HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc---------ccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHH
Confidence 555666666665554 445555555555554 23355677777777665544444 7777777766665
Q ss_pred hchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc--cCh--------hHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000742 242 IEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSM--EDE--------DALASQIDQNIETVKKAIEVMDELKK 311 (1313)
Q Consensus 242 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~--~~~--------~~~~~~~~~~lg~~~~a~~~~~~a~~ 311 (1313)
.... --+..++++|..++..|++++|...+.+|+...... .+. .+.++.++..++++..|-..|..+..
T Consensus 446 ~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk 524 (1018)
T KOG2002|consen 446 KGKQ-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK 524 (1018)
T ss_pred cCCC-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4443 445677777777777777777777777777663211 111 12223333334444444455555555
Q ss_pred HHHHHHHHHHHHH---HhhCCchHHHHHHHHH--------------------------------------------HHHH
Q 000742 312 EEQNLKKLTRNMI---IAKGTSQERKYLLQQN--------------------------------------------ASLD 344 (1313)
Q Consensus 312 ~~~~~~~l~~~l~---~~~~~~~~a~~~~~~~--------------------------------------------~~l~ 344 (1313)
..+.+...+..++ ..++...++...++.+ -++-
T Consensus 525 ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ysli 604 (1018)
T KOG2002|consen 525 EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLI 604 (1018)
T ss_pred HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHH
Confidence 4444443333332 1122233333333332 1112
Q ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHH-HhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchh
Q 000742 345 RLIEKSSMI-----FAWLKHCEYAKRKKRIAS-ELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEG 418 (1313)
Q Consensus 345 ~L~~~~~~~-----~~~~~A~~~~~~a~~i~~-~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~ 418 (1313)
.||+.+.+. .+-+++...+.+|++++. .+...|....+-..+|.++...|++.+|+..|.++.+-.. .
T Consensus 605 aLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~------~ 678 (1018)
T KOG2002|consen 605 ALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS------D 678 (1018)
T ss_pred HhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh------h
Confidence 223322111 111234445555555532 3445555556666666666666666666666666554433 2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhHHHHHH
Q 000742 419 QALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMI 472 (1313)
Q Consensus 419 ~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~~~~~~al~~L~~~~~~ 472 (1313)
...+|.|+|.||..+|+|-.|++.|+.+++-+.+.+.+ .++..||.++..
T Consensus 679 ~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~----~vl~~Lara~y~ 728 (1018)
T KOG2002|consen 679 FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRS----EVLHYLARAWYE 728 (1018)
T ss_pred CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCH----HHHHHHHHHHHH
Confidence 23457777777777777777777777777665433322 244455555543
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=1.1e-20 Score=235.93 Aligned_cols=327 Identities=9% Similarity=-0.047 Sum_probs=250.2
Q ss_pred chhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccC
Q 000742 4 DEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEH 83 (1313)
Q Consensus 4 ~~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 83 (1313)
.+|++++|...++.++...|....+ ++.+|......|++++|+..|+++++..|.. ..++..+|.++...|+
T Consensus 54 ~~g~~~~A~~l~~~~l~~~p~~~~~--l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~------~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 54 RKDETDVGLTLLSDRVLTAKNGRDL--LRRWVISPLASSQPDAVLQVVNKLLAVNVCQ------PEDVLLVASVLLKSKQ 125 (656)
T ss_pred hcCCcchhHHHhHHHHHhCCCchhH--HHHHhhhHhhcCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCC
Confidence 3578888888888888888887666 8888888888999999999999888876432 6788888999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhH
Q 000742 84 FKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLK 163 (1313)
Q Consensus 84 ~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p 163 (1313)
+++|+..+ ++++++.|... .++..+|.+|... |++++|+..+++++... |
T Consensus 126 ~~~Ai~~l-~~Al~l~P~~~------~a~~~la~~l~~~--------g~~~eA~~~~~~~~~~~---------------P 175 (656)
T PRK15174 126 YATVADLA-EQAWLAFSGNS------QIFALHLRTLVLM--------DKELQAISLARTQAQEV---------------P 175 (656)
T ss_pred HHHHHHHH-HHHHHhCCCcH------HHHHHHHHHHHHC--------CChHHHHHHHHHHHHhC---------------C
Confidence 99999999 88888866543 4577888888877 88888988888766551 1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000742 164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIE 243 (1313)
Q Consensus 164 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~ 243 (1313)
....++..++ .+...|++++|+..++++++..+. . ....+..++.++...|++++|+..|+++++..+
T Consensus 176 ~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~------~--~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p--- 243 (656)
T PRK15174 176 PRGDMIATCL-SFLNKSRLPEDHDLARALLPFFAL------E--RQESAGLAVDTLCAVGKYQEAIQTGESALARGL--- 243 (656)
T ss_pred CCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCC------c--chhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC---
Confidence 2233444443 477889999999888888776321 1 112335667888888999999999999888754
Q ss_pred hhhhHHHHHHHHHHHHHHhcCHHH----HHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742 244 HCQGEAKGYINLGELHYRVQKYDE----AILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKL 319 (1313)
Q Consensus 244 ~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l 319 (1313)
....++..+|.+|...|++++ |+..|++++++.|.....
T Consensus 244 ---~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a---------------------------------- 286 (656)
T PRK15174 244 ---DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRI---------------------------------- 286 (656)
T ss_pred ---CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHH----------------------------------
Confidence 567788889999999998885 788888888887643221
Q ss_pred HHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHH
Q 000742 320 TRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKA 399 (1313)
Q Consensus 320 ~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A 399 (1313)
+..++..+...+++++|+.++++++.+ .|..+.++..+|.+|...|++++|
T Consensus 287 -----------------------~~~lg~~l~~~g~~~eA~~~l~~al~l------~P~~~~a~~~La~~l~~~G~~~eA 337 (656)
T PRK15174 287 -----------------------VTLYADALIRTGQNEKAIPLLQQSLAT------HPDLPYVRAMYARALRQVGQYTAA 337 (656)
T ss_pred -----------------------HHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 233444455566677777777777654 355668889999999999999999
Q ss_pred HHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000742 400 IKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVE 452 (1313)
Q Consensus 400 ~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~ 452 (1313)
+..|+++++..+ ....++..+|.++...|++++|+..|++++++..+
T Consensus 338 ~~~l~~al~~~P------~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 338 SDEFVQLAREKG------VTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHHHhCc------cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 999999997643 33455667899999999999999999999998654
No 23
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.88 E-value=5.8e-19 Score=204.86 Aligned_cols=314 Identities=17% Similarity=0.196 Sum_probs=257.2
Q ss_pred HHHHHHHccChHHHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhc
Q 000742 74 LGEVYLRLEHFKDALIYQVKKHLELAKD--ASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLK 151 (1313)
Q Consensus 74 lg~~y~~~g~~~~A~~~~~~kal~l~~~--~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~ 151 (1313)
++..+...-+.+.....+ .....+..+ .........+...+|..|... |+|++|+..+++|+++..+..
T Consensus 163 la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~P~~~~~~~~La~~y~~~--------g~~e~A~~l~k~Al~~l~k~~ 233 (508)
T KOG1840|consen 163 LADLGGEKQEEDSSIEGT-LKGLDIQAKGLGDEDPERLRTLRNLAEMYAVQ--------GRLEKAEPLCKQALRILEKTS 233 (508)
T ss_pred HHhhccccccccccchhh-HHHHHHHHHhcccCCchHHHHHHHHHHHHHHh--------ccHHHHHHHHHHHHHHHHHcc
Confidence 444444444443444444 444443322 223344556677799999988 999999999999999976654
Q ss_pred cCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHH
Q 000742 152 ENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREH 231 (1313)
Q Consensus 152 ~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~ 231 (1313)
... .|.++.....+|.+|..+++|++|+..|++|+.+.+.. .+.+++..+.++.+||.+|...|++++|..+
T Consensus 234 G~~-------hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~-~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~ 305 (508)
T KOG1840|consen 234 GLK-------HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV-FGEDHPAVAATLNNLAVLYYKQGKFAEAEEY 305 (508)
T ss_pred Ccc-------CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHhccCChHHHHHH
Confidence 432 56888888899999999999999999999999998875 4578999999999999999999999999999
Q ss_pred HHHHHHHHHHh--chhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhH-HHHHHHHhHHHHHHHHHHHHH
Q 000742 232 IEQDIIICKKI--EHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDA-LASQIDQNIETVKKAIEVMDE 308 (1313)
Q Consensus 232 ~~kal~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~-~~~~~~~~lg~~~~a~~~~~~ 308 (1313)
+++|++|.++. ..++..+..+.+++.++..++++++|..++++++++..+...... ..+
T Consensus 306 ~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a------------------ 367 (508)
T KOG1840|consen 306 CERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLA------------------ 367 (508)
T ss_pred HHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHH------------------
Confidence 99999999874 456778889999999999999999999999999998875443322 222
Q ss_pred HHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--chhhHHHHHHH
Q 000742 309 LKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCD--KGKLSDSFLVI 386 (1313)
Q Consensus 309 a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~--~~~~a~~~~~l 386 (1313)
....+||..+..+|.|.+|.+++++++.+.++... .......+..+
T Consensus 368 --------------------------------~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~l 415 (508)
T KOG1840|consen 368 --------------------------------KIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQL 415 (508)
T ss_pred --------------------------------HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHH
Confidence 22667788888899999999999999999988765 56678999999
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHHHHHhCC-chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q 000742 387 GESYQKLRKFNKAIKWYTKSWEMYKSIGN-LEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEAN 454 (1313)
Q Consensus 387 g~~y~~~g~~~~A~~~~~kal~l~~~~~~-~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~ 454 (1313)
|..|.+++++.+|...|..+..+.+..+. .++....|.+||.+|..+|++++|+++.++++...++..
T Consensus 416 a~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~ 484 (508)
T KOG1840|consen 416 AEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRL 484 (508)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999976655 457788899999999999999999999999998876643
No 24
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=2.8e-24 Score=238.37 Aligned_cols=271 Identities=24% Similarity=0.225 Sum_probs=184.2
Q ss_pred CCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCCCCCChhhHHHHHH
Q 000742 917 TRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLV 996 (1313)
Q Consensus 917 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 996 (1313)
..|+.||||+|++.. .+..|..-+++-+|+||+|+|.. ...+.|-++..|-.||||+|++ ..++.
T Consensus 103 ~dLt~lDLShNqL~E-----vP~~LE~AKn~iVLNLS~N~Iet----IPn~lfinLtDLLfLDLS~NrL------e~LPP 167 (1255)
T KOG0444|consen 103 KDLTILDLSHNQLRE-----VPTNLEYAKNSIVLNLSYNNIET----IPNSLFINLTDLLFLDLSNNRL------EMLPP 167 (1255)
T ss_pred ccceeeecchhhhhh-----cchhhhhhcCcEEEEcccCcccc----CCchHHHhhHhHhhhccccchh------hhcCH
Confidence 566667777776664 45555666666667777776653 1112233445566667777763 33455
Q ss_pred hhccCCccceeecCCCCCChHHHHHHHHHhhcCCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCCChhHHH
Q 000742 997 KLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIH 1076 (1313)
Q Consensus 997 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 1076 (1313)
.+..+..|++|.|++|.+.-.. +.++..+++|++|.+++.+-+-. .++..+. .+.+|..+|||.|++.-
T Consensus 168 Q~RRL~~LqtL~Ls~NPL~hfQ---LrQLPsmtsL~vLhms~TqRTl~---N~Ptsld-~l~NL~dvDlS~N~Lp~---- 236 (1255)
T KOG0444|consen 168 QIRRLSMLQTLKLSNNPLNHFQ---LRQLPSMTSLSVLHMSNTQRTLD---NIPTSLD-DLHNLRDVDLSENNLPI---- 236 (1255)
T ss_pred HHHHHhhhhhhhcCCChhhHHH---HhcCccchhhhhhhcccccchhh---cCCCchh-hhhhhhhccccccCCCc----
Confidence 5556666777777777654322 22333445577777777643321 1222222 22578899999998876
Q ss_pred HHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhcCCCCceeEEEeecCCCCHHHHHHHHHHhhcCCCccEEEccCCCCC
Q 000742 1077 KFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASK 1156 (1313)
Q Consensus 1077 ~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~N~i~ 1156 (1313)
+++++-.+++|+.|+||+|.|+.... ..... . +|++|+||.|+++ .+|.++.+++.|+.|.+.+|+++
T Consensus 237 -vPecly~l~~LrrLNLS~N~iteL~~-~~~~W-~----~lEtLNlSrNQLt-----~LP~avcKL~kL~kLy~n~NkL~ 304 (1255)
T KOG0444|consen 237 -VPECLYKLRNLRRLNLSGNKITELNM-TEGEW-E----NLETLNLSRNQLT-----VLPDAVCKLTKLTKLYANNNKLT 304 (1255)
T ss_pred -chHHHhhhhhhheeccCcCceeeeec-cHHHH-h----hhhhhccccchhc-----cchHHHhhhHHHHHHHhccCccc
Confidence 47788889999999999999874322 11221 1 4999999999998 58899999999999999999887
Q ss_pred hhhhhhhcccccccCCcccccccccccccccccccccccccCCCCcccccccCCccchhhhccccCCCCcccccccCCcc
Q 000742 1157 ELTLQQNLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIRVESAASGFDNSCTSSCQKNSSF 1236 (1313)
Q Consensus 1157 ~~~~~~~l~~l~~~~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls 1236 (1313)
=+|+. +.++.+.+|+++..++|.+.-.+.. .--| ..|++|.|+
T Consensus 305 FeGiP---------------------------------SGIGKL~~Levf~aanN~LElVPEg---lcRC-~kL~kL~L~ 347 (1255)
T KOG0444|consen 305 FEGIP---------------------------------SGIGKLIQLEVFHAANNKLELVPEG---LCRC-VKLQKLKLD 347 (1255)
T ss_pred ccCCc---------------------------------cchhhhhhhHHHHhhccccccCchh---hhhh-HHHHHhccc
Confidence 55443 5578888999999999988544332 2233 589999999
Q ss_pred chhhHHHHHHHHhccccCceecCCCCC
Q 000742 1237 ECQFVQELSSAIGMAKPLQLLDLSNNG 1263 (1313)
Q Consensus 1237 ~n~l~~~l~~~l~~~~~L~~LdLs~N~ 1263 (1313)
.|++.. +|++|.-++.|..|||.+|.
T Consensus 348 ~NrLiT-LPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 348 HNRLIT-LPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred ccceee-chhhhhhcCCcceeeccCCc
Confidence 999765 89999999999999999884
No 25
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.86 E-value=3.1e-18 Score=198.78 Aligned_cols=282 Identities=17% Similarity=0.186 Sum_probs=238.0
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000742 162 LKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKK 241 (1313)
Q Consensus 162 ~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~ 241 (1313)
.|....+..++|..|..+|+|++|+..+++|+++..+. .+-+++..+.....+|.+|..+++|.+|+..|++|+.+.+.
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~-~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKT-SGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHc-cCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 45778888889999999999999999999999997653 22456777777778999999999999999999999999987
Q ss_pred h--chhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742 242 I--EHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKL 319 (1313)
Q Consensus 242 ~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l 319 (1313)
. .+++..+.++.+||.+|...|++++|..++++|+++......... +
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~---------~---------------------- 322 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASH---------P---------------------- 322 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCh---------H----------------------
Confidence 7 577889999999999999999999999999999999876222110 0
Q ss_pred HHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCchhhHHHHHHHHHHHHHhhCHH
Q 000742 320 TRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASEL--CDKGKLSDSFLVIGESYQKLRKFN 397 (1313)
Q Consensus 320 ~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~--~~~~~~a~~~~~lg~~y~~~g~~~ 397 (1313)
+.+..+.+++..+..++.++.|..++++++.+.... .+.+..+.++.+||.+|..+|+|+
T Consensus 323 ------------------~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ 384 (508)
T KOG1840|consen 323 ------------------EVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYK 384 (508)
T ss_pred ------------------HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchh
Confidence 111225666777778888889999999998888733 344478899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCC--chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh-hHHHHHHHhhHHHHHHhh
Q 000742 398 KAIKWYTKSWEMYKSIGN--LEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLP-SVQLSALENMHYSHMIRF 474 (1313)
Q Consensus 398 ~A~~~~~kal~l~~~~~~--~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~-~~~~~al~~L~~~~~~~~ 474 (1313)
+|.++|++|+++..+..+ .+.....+.++|..|.+++++.+|...|.++..|.+..+.. +.....|.+|+..| .+.
T Consensus 385 ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y-~~~ 463 (508)
T KOG1840|consen 385 EAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALY-RAQ 463 (508)
T ss_pred HHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH-HHc
Confidence 999999999999988776 56678899999999999999999999999999999665533 35567999999988 578
Q ss_pred cCHHHHHHHHHHHHHHHhhh
Q 000742 475 DNIEEARRLQHEIDKLKESK 494 (1313)
Q Consensus 475 ~~~~~a~~~~e~~~~l~~s~ 494 (1313)
+++++|.++.+.+...++..
T Consensus 464 g~~e~a~~~~~~~~~~~~~~ 483 (508)
T KOG1840|consen 464 GNYEAAEELEEKVLNAREQR 483 (508)
T ss_pred ccHHHHHHHHHHHHHHHHHc
Confidence 89999999999999888665
No 26
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.3e-18 Score=189.39 Aligned_cols=406 Identities=15% Similarity=0.073 Sum_probs=293.0
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCH
Q 000742 26 EEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDL 105 (1313)
Q Consensus 26 ~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~ 105 (1313)
..|..+...|+-++..|+|++|+++|.+|++..+. .+..|.+++-||...|++++.++.. .+|+++.|+.
T Consensus 113 k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~------epiFYsNraAcY~~lgd~~~Vied~-TkALEl~P~Y--- 182 (606)
T KOG0547|consen 113 KYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPD------EPIFYSNRAACYESLGDWEKVIEDC-TKALELNPDY--- 182 (606)
T ss_pred HHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCC------CchhhhhHHHHHHHHhhHHHHHHHH-HHHhhcCcHH---
Confidence 34566889999999999999999999999999843 2678999999999999999999999 9999998776
Q ss_pred HHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHH------------------HHHH-----HHHH-Hhc-cCCCCCcc-
Q 000742 106 VEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYF------------------KSAM-----KLAQ-TLK-ENPATSRS- 159 (1313)
Q Consensus 106 ~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~------------------~~Al-----~l~~-~~~-~~~~~~~~- 159 (1313)
..+++..+..+..+ |++.+|+... ++.+ ..+. .+. +.++...+
T Consensus 183 ---~KAl~RRA~A~E~l--------g~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~ 251 (606)
T KOG0547|consen 183 ---VKALLRRASAHEQL--------GKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSA 251 (606)
T ss_pred ---HHHHHHHHHHHHhh--------ccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcH
Confidence 47888888888887 7777775532 1222 1121 122 12111100
Q ss_pred --------hhhHH----------HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhHhhhhcc----CCCchHHHHHHHH
Q 000742 160 --------SFLKE----------YIDAHNNIGMLQMELD---NLEEAKKFLIRGLEICNEEEV----SEDDDGRSRLHHN 214 (1313)
Q Consensus 160 --------~~~p~----------~~~~~~~la~~y~~~g---~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~~ 214 (1313)
+|.++ .+.+-..-+.-+...+ .|.+|..++.+.......... ...-...+.++..
T Consensus 252 ~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~ 331 (606)
T KOG0547|consen 252 TFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLL 331 (606)
T ss_pred HHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHH
Confidence 00000 0011111111112222 677777777777655443211 1112445888999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHH
Q 000742 215 LGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQ 294 (1313)
Q Consensus 215 lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~ 294 (1313)
.|..++..|++-.|.+.|+++|.+.+ .....|+.+|.+|....+.++-..+|.+|..++|...+.++..++++.
T Consensus 332 ~gtF~fL~g~~~~a~~d~~~~I~l~~------~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~f 405 (606)
T KOG0547|consen 332 RGTFHFLKGDSLGAQEDFDAAIKLDP------AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRF 405 (606)
T ss_pred hhhhhhhcCCchhhhhhHHHHHhcCc------ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHH
Confidence 99999999999999999999999977 344449999999999999999999999999999999998888888888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 000742 295 NIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELC 374 (1313)
Q Consensus 295 ~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~ 374 (1313)
-++++.+|+..|++++...+.... .+..++......+.++.+...|+.++.-+
T Consensus 406 lL~q~e~A~aDF~Kai~L~pe~~~-----------------------~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF---- 458 (606)
T KOG0547|consen 406 LLQQYEEAIADFQKAISLDPENAY-----------------------AYIQLCCALYRQHKIAESMKTFEEAKKKF---- 458 (606)
T ss_pred HHHHHHHHHHHHHHHhhcChhhhH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhC----
Confidence 888999888888888743333221 13344444455567777888888776644
Q ss_pred CchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHc
Q 000742 375 DKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLD-SNGDWAGALDAFQEGYRIAVEA 453 (1313)
Q Consensus 375 ~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~-~~g~~~~A~~~~~kAl~i~~~~ 453 (1313)
|..++.|...|.++..+++|++|+++|.+|+++.+......-.+..+.+.|.+.. -.+++..|+..+++|+++..+
T Consensus 459 --P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpk- 535 (606)
T KOG0547|consen 459 --PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPK- 535 (606)
T ss_pred --CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCch-
Confidence 5566999999999999999999999999999998753322222333444444333 247899999999999988533
Q ss_pred CChhHHHHHHHhhHHHHHHhhcCHHHHHHHHHHHHHHHhhh
Q 000742 454 NLPSVQLSALENMHYSHMIRFDNIEEARRLQHEIDKLKESK 494 (1313)
Q Consensus 454 ~~~~~~~~al~~L~~~~~~~~~~~~~a~~~~e~~~~l~~s~ 494 (1313)
...|+..||.+.. +.++.++|.++.+....|.++.
T Consensus 536 -----ce~A~~tlaq~~l-Q~~~i~eAielFEksa~lArt~ 570 (606)
T KOG0547|consen 536 -----CEQAYETLAQFEL-QRGKIDEAIELFEKSAQLARTE 570 (606)
T ss_pred -----HHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHhH
Confidence 4568889998765 4567888999999888888776
No 27
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=8.4e-23 Score=226.80 Aligned_cols=342 Identities=18% Similarity=0.145 Sum_probs=233.0
Q ss_pred CCcCEEEecCCCCCHHH-HHHHHHHHHhcccCccceEEEccCCCCCHHHHHHHHhcccCCCCcCEEEecCCCCChhHHHH
Q 000742 858 KTVALLDLSHNLLGNGT-MEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSY 936 (1313)
Q Consensus 858 ~~L~~L~Ls~n~l~~~~-~~~L~~~l~~~~~~~~l~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 936 (1313)
+-++-+|+++|.++... ...... +.++++|.|...++...+ ..++. +.+|++|.+++|++..
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~q-------Mt~~~WLkLnrt~L~~vP-eEL~~----lqkLEHLs~~HN~L~~----- 69 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQ-------MTQMTWLKLNRTKLEQVP-EELSR----LQKLEHLSMAHNQLIS----- 69 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHH-------hhheeEEEechhhhhhCh-HHHHH----HhhhhhhhhhhhhhHh-----
Confidence 45566677777765321 111111 233456666555443222 23333 3678888888887764
Q ss_pred HHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCCCCCChhhHHHHHHhhccCCccceeecCCCCCCh
Q 000742 937 LSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSK 1016 (1313)
Q Consensus 937 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~ 1016 (1313)
+...|..++.|+.+.+..|++...|+ +.-+..+..|+.||||+|. +.+.+..+..-+++-.|+||+|+|..
T Consensus 70 vhGELs~Lp~LRsv~~R~N~LKnsGi---P~diF~l~dLt~lDLShNq------L~EvP~~LE~AKn~iVLNLS~N~Iet 140 (1255)
T KOG0444|consen 70 VHGELSDLPRLRSVIVRDNNLKNSGI---PTDIFRLKDLTILDLSHNQ------LREVPTNLEYAKNSIVLNLSYNNIET 140 (1255)
T ss_pred hhhhhccchhhHHHhhhccccccCCC---Cchhcccccceeeecchhh------hhhcchhhhhhcCcEEEEcccCcccc
Confidence 44456667777888887777765443 2334567778888888887 34566666677778888888888755
Q ss_pred HHHHHHHHHhhcCCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCCChhHHHHHHHHHhcCCCccEEEccCC
Q 000742 1017 PVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGN 1096 (1313)
Q Consensus 1017 ~~~~~l~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N 1096 (1313)
..-..+.++. .|-.||||+|.+.. +++-+. .+..|++|+|++|.+....... +..+++|+.|.+|+.
T Consensus 141 IPn~lfinLt---DLLfLDLS~NrLe~-----LPPQ~R-RL~~LqtL~Ls~NPL~hfQLrQ----LPsmtsL~vLhms~T 207 (1255)
T KOG0444|consen 141 IPNSLFINLT---DLLFLDLSNNRLEM-----LPPQIR-RLSMLQTLKLSNNPLNHFQLRQ----LPSMTSLSVLHMSNT 207 (1255)
T ss_pred CCchHHHhhH---hHhhhccccchhhh-----cCHHHH-HHhhhhhhhcCCChhhHHHHhc----Cccchhhhhhhcccc
Confidence 4333333343 37788888888743 333333 2357889999999887664433 346778888888887
Q ss_pred CCC-hHHHHHHHHHhcCCCCceeEEEeecCCCCHHHHHHHHHHhhcCCCccEEEccCCCCChh--hhhhhcccccccCCc
Q 000742 1097 PIM-KEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASKEL--TLQQNLSSVNSENLQ 1173 (1313)
Q Consensus 1097 ~i~-~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~N~i~~~--~~~~~l~~l~~~~l~ 1173 (1313)
+-+ +..+..+-. +. +|..+|||.|.+. .+|..+.+.++|+.|+||+|.|+.. +...- ..|.+++|+
T Consensus 208 qRTl~N~Ptsld~-l~----NL~dvDlS~N~Lp-----~vPecly~l~~LrrLNLS~N~iteL~~~~~~W-~~lEtLNlS 276 (1255)
T KOG0444|consen 208 QRTLDNIPTSLDD-LH----NLRDVDLSENNLP-----IVPECLYKLRNLRRLNLSGNKITELNMTEGEW-ENLETLNLS 276 (1255)
T ss_pred cchhhcCCCchhh-hh----hhhhccccccCCC-----cchHHHhhhhhhheeccCcCceeeeeccHHHH-hhhhhhccc
Confidence 643 222333322 22 4899999999987 4788999999999999999999877 23333 567789999
Q ss_pred ccccccccccccccccccccccccCCCCcccccccCCccchhhhccccCCCCc-ccccccCCccchhhHHHHHHHHhccc
Q 000742 1174 PALKTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIRVESAASGFDNSC-TSSCQKNSSFECQFVQELSSAIGMAK 1252 (1313)
Q Consensus 1174 ~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~-~~~L~~L~Ls~n~l~~~l~~~l~~~~ 1252 (1313)
.|+++.+| ..++.++.|+.|.+.+|+++...-+ ...+ ...|+.+..++|.+ .-+|+.|+.|+
T Consensus 277 rNQLt~LP-------------~avcKL~kL~kLy~n~NkL~FeGiP---SGIGKL~~Levf~aanN~L-ElVPEglcRC~ 339 (1255)
T KOG0444|consen 277 RNQLTVLP-------------DAVCKLTKLTKLYANNNKLTFEGIP---SGIGKLIQLEVFHAANNKL-ELVPEGLCRCV 339 (1255)
T ss_pred cchhccch-------------HHHhhhHHHHHHHhccCcccccCCc---cchhhhhhhHHHHhhcccc-ccCchhhhhhH
Confidence 99999988 5678899999999999999765322 2222 23888888888875 55799999999
Q ss_pred cCceecCCCCCCCH
Q 000742 1253 PLQLLDLSNNGFST 1266 (1313)
Q Consensus 1253 ~L~~LdLs~N~l~~ 1266 (1313)
.|+.|.|+.|++-.
T Consensus 340 kL~kL~L~~NrLiT 353 (1255)
T KOG0444|consen 340 KLQKLKLDHNRLIT 353 (1255)
T ss_pred HHHHhcccccceee
Confidence 99999999998754
No 28
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.84 E-value=2.6e-18 Score=178.69 Aligned_cols=406 Identities=15% Similarity=0.135 Sum_probs=267.9
Q ss_pred HhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Q 000742 20 EEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELA 99 (1313)
Q Consensus 20 ~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~ 99 (1313)
+......++.-.+.+|..++..|++..|+..|..|++..+.. ..+++..|.+|..+|+-..|+..+ .+++++.
T Consensus 30 ~~~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~------Y~aifrRaT~yLAmGksk~al~Dl-~rVlelK 102 (504)
T KOG0624|consen 30 ESTASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNN------YQAIFRRATVYLAMGKSKAALQDL-SRVLELK 102 (504)
T ss_pred HhcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh------HHHHHHHHHHHhhhcCCccchhhH-HHHHhcC
Confidence 344555666678899999999999999999999999877543 889999999999999999999999 9999998
Q ss_pred HHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcch-hhHHHHHHHHHHHHHHHH
Q 000742 100 KDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSS-FLKEYIDAHNNIGMLQME 178 (1313)
Q Consensus 100 ~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~-~~p~~~~~~~~la~~y~~ 178 (1313)
|+.. .+....|.++..+ |++++|+..|++.++.-...+.... ..+. ........+......++.
T Consensus 103 pDF~------~ARiQRg~vllK~--------Gele~A~~DF~~vl~~~~s~~~~~e-aqskl~~~~e~~~l~~ql~s~~~ 167 (504)
T KOG0624|consen 103 PDFM------AARIQRGVVLLKQ--------GELEQAEADFDQVLQHEPSNGLVLE-AQSKLALIQEHWVLVQQLKSASG 167 (504)
T ss_pred ccHH------HHHHHhchhhhhc--------ccHHHHHHHHHHHHhcCCCcchhHH-HHHHHHhHHHHHHHHHHHHHHhc
Confidence 7763 4567889999887 9999999999998865321110000 0000 000112233444556677
Q ss_pred cCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHH
Q 000742 179 LDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGEL 258 (1313)
Q Consensus 179 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~ 258 (1313)
.|++..|+++..+.+++ .++.+..+...+.+|...|+..+|+..++.+-++.. +....++.++.+
T Consensus 168 ~GD~~~ai~~i~~llEi---------~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~------DnTe~~ykis~L 232 (504)
T KOG0624|consen 168 SGDCQNAIEMITHLLEI---------QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ------DNTEGHYKISQL 232 (504)
T ss_pred CCchhhHHHHHHHHHhc---------CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc------cchHHHHHHHHH
Confidence 89999999999999988 566788999999999999999999999999988865 778899999999
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHH
Q 000742 259 HYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQ 338 (1313)
Q Consensus 259 ~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~ 338 (1313)
++..|+.+.++...++++++.|+...-+. .|-.+..+.+.+..++++
T Consensus 233 ~Y~vgd~~~sL~~iRECLKldpdHK~Cf~----~YKklkKv~K~les~e~~----------------------------- 279 (504)
T KOG0624|consen 233 LYTVGDAENSLKEIRECLKLDPDHKLCFP----FYKKLKKVVKSLESAEQA----------------------------- 279 (504)
T ss_pred HHhhhhHHHHHHHHHHHHccCcchhhHHH----HHHHHHHHHHHHHHHHHH-----------------------------
Confidence 99999999999999999999987653211 122222222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchh
Q 000742 339 QNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEG 418 (1313)
Q Consensus 339 ~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~ 418 (1313)
...+.|.++++-.++.+....+. .+.....+..+..+|..-+++-+|+..+.+++++.+ .
T Consensus 280 ------------ie~~~~t~cle~ge~vlk~ep~~--~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~------~ 339 (504)
T KOG0624|consen 280 ------------IEEKHWTECLEAGEKVLKNEPEE--TMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDP------D 339 (504)
T ss_pred ------------HhhhhHHHHHHHHHHHHhcCCcc--cceeeeeeheeeecccccCCHHHHHHHHHHHHhcCc------h
Confidence 12334444444444443322211 111223444456666666666666666666665533 4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-------------------------------cCChhHHHHHHHhhH
Q 000742 419 QALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVE-------------------------------ANLPSVQLSALENMH 467 (1313)
Q Consensus 419 ~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~-------------------------------~~~~~~~~~al~~L~ 467 (1313)
.+.++...|.+|.-...|+.|+..|++|.++... .........||+.|+
T Consensus 340 dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~kRDYYKILGVkRnAsKqEI~KAYRKlA 419 (504)
T KOG0624|consen 340 DVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSGKRDYYKILGVKRNASKQEITKAYRKLA 419 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhccchHHHHhhhcccccHHHHHHHHHHHH
Confidence 4556666666666666666666666666542110 112334457888888
Q ss_pred HHHHH-hhcCHHHHHHHHHHHH---HHHhhh-ccchhhhcccCccccCCCCCCCCCCCCCCCCC
Q 000742 468 YSHMI-RFDNIEEARRLQHEID---KLKESK-SEDLEAYDVARDCCSETDTEGNDHLPDVRSSA 526 (1313)
Q Consensus 468 ~~~~~-~~~~~~~a~~~~e~~~---~l~~s~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 526 (1313)
.-++. -+.+.++-..-..... .-++.. ++|.+.++ |.|+||-||+++.
T Consensus 420 qkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqF-----------DnGeDPLD~Es~q 472 (504)
T KOG0624|consen 420 QKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQF-----------DNGEDPLDPESQQ 472 (504)
T ss_pred HhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhc-----------cCCCCCCChhhcc
Confidence 87775 3444443222222222 222222 34555555 7777777777665
No 29
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=1.8e-19 Score=205.00 Aligned_cols=307 Identities=14% Similarity=0.110 Sum_probs=180.8
Q ss_pred HHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHH
Q 000742 29 RWANVIGDILKNR--GEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLV 106 (1313)
Q Consensus 29 ~~~~~lg~~y~~~--g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~ 106 (1313)
..+..+|..|... -+..+|+..|.+ + +.+... ...++..+|..|+++++|++|..+| +.+-++.|-.-+..
T Consensus 318 ~llr~~~~~~~~~s~y~~~~A~~~~~k-l---p~h~~n--t~wvl~q~GrayFEl~~Y~~a~~~F-~~~r~~~p~rv~~m 390 (638)
T KOG1126|consen 318 ELLRGLGEGYRSLSQYNCREALNLFEK-L---PSHHYN--TGWVLSQLGRAYFELIEYDQAERIF-SLVRRIEPYRVKGM 390 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-h---HHhcCC--chHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhccccccch
Confidence 3455555555433 345677777776 2 111121 2466677777777777777777777 66666554321111
Q ss_pred HHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHH
Q 000742 107 EQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAK 186 (1313)
Q Consensus 107 ~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~ 186 (1313)
. ....++..+ +-+-++.++-+- +... .|.-+++|..+|.+|-.+++++.|+
T Consensus 391 ---e---iyST~LWHL---------q~~v~Ls~Laq~--Li~~------------~~~sPesWca~GNcfSLQkdh~~Ai 441 (638)
T KOG1126|consen 391 ---E---IYSTTLWHL---------QDEVALSYLAQD--LIDT------------DPNSPESWCALGNCFSLQKDHDTAI 441 (638)
T ss_pred ---h---HHHHHHHHH---------HhhHHHHHHHHH--HHhh------------CCCCcHHHHHhcchhhhhhHHHHHH
Confidence 0 111111111 111222222221 1111 1233566777777777777777777
Q ss_pred HHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHH
Q 000742 187 KFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYD 266 (1313)
Q Consensus 187 ~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 266 (1313)
+.|++|+++ ++..+.+|..+|.-+....++|+|..+|++|+...+ ....+|+.+|.+|.++++++
T Consensus 442 k~f~RAiQl---------dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~------rhYnAwYGlG~vy~Kqek~e 506 (638)
T KOG1126|consen 442 KCFKRAIQL---------DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP------RHYNAWYGLGTVYLKQEKLE 506 (638)
T ss_pred HHHHHhhcc---------CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc------hhhHHHHhhhhheeccchhh
Confidence 777777666 444566677777777777777777777777776655 55667777777777777777
Q ss_pred HHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHH
Q 000742 267 EAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRL 346 (1313)
Q Consensus 267 ~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L 346 (1313)
.|.-+|++|+++.|.........+.++..+|..++|+..|++|..
T Consensus 507 ~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~----------------------------------- 551 (638)
T KOG1126|consen 507 FAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH----------------------------------- 551 (638)
T ss_pred HHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh-----------------------------------
Confidence 777777777777666555555556666777777777777666541
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Q 000742 347 IEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNM 426 (1313)
Q Consensus 347 ~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~l 426 (1313)
..+..+-.-+..|.++..+++|++|+..+++.-++.+ +++.+++.+
T Consensus 552 ----------------------------ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP------~es~v~~ll 597 (638)
T KOG1126|consen 552 ----------------------------LDPKNPLCKYHRASILFSLGRYVEALQELEELKELVP------QESSVFALL 597 (638)
T ss_pred ----------------------------cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCc------chHHHHHHH
Confidence 1223334444566666666777777766666665543 566666677
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q 000742 427 GNVLDSNGDWAGALDAFQEGYRIAVEANL 455 (1313)
Q Consensus 427 g~~y~~~g~~~~A~~~~~kAl~i~~~~~~ 455 (1313)
|.+|.++|+.+.|+..|--|..+..+..+
T Consensus 598 gki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 598 GKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 77777777777777777776666666444
No 30
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.82 E-value=2e-18 Score=215.77 Aligned_cols=294 Identities=10% Similarity=0.013 Sum_probs=232.8
Q ss_pred chhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccC
Q 000742 4 DEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEH 83 (1313)
Q Consensus 4 ~~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 83 (1313)
..|++++|+..|+++++..|....+ +..+|.++...|++++|+..|++++++.+ ....++..+|.++...|+
T Consensus 88 ~~g~~~~A~~~l~~~l~~~P~~~~a--~~~la~~l~~~g~~~~Ai~~l~~Al~l~P------~~~~a~~~la~~l~~~g~ 159 (656)
T PRK15174 88 ASSQPDAVLQVVNKLLAVNVCQPED--VLLVASVLLKSKQYATVADLAEQAWLAFS------GNSQIFALHLRTLVLMDK 159 (656)
T ss_pred hcCCHHHHHHHHHHHHHhCCCChHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHCCC
Confidence 4689999999999999999998777 88999999999999999999999998863 337889999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhH
Q 000742 84 FKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLK 163 (1313)
Q Consensus 84 ~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p 163 (1313)
+++|+..+ ++++...|.... ++..++ .+... |++++|+..++++++... .
T Consensus 160 ~~eA~~~~-~~~~~~~P~~~~------a~~~~~-~l~~~--------g~~~eA~~~~~~~l~~~~----~---------- 209 (656)
T PRK15174 160 ELQAISLA-RTQAQEVPPRGD------MIATCL-SFLNK--------SRLPEDHDLARALLPFFA----L---------- 209 (656)
T ss_pred hHHHHHHH-HHHHHhCCCCHH------HHHHHH-HHHHc--------CCHHHHHHHHHHHHhcCC----C----------
Confidence 99999999 988877665432 233333 35555 999999999998876521 0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHHH
Q 000742 164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDK----SREHIEQDIIIC 239 (1313)
Q Consensus 164 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~----A~~~~~kal~~~ 239 (1313)
.....+..++.++...|++++|+..|+++++.. +....++.++|.+|...|++++ |+.+|++++++.
T Consensus 210 ~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~---------p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 210 ERQESAGLAVDTLCAVGKYQEAIQTGESALARG---------LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---------CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 112344567889999999999999999999873 3346788999999999999996 899999999987
Q ss_pred HHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742 240 KKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKL 319 (1313)
Q Consensus 240 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l 319 (1313)
| ....++..+|.++...|++++|+.++++++++.|........+
T Consensus 281 P------~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~L------------------------------ 324 (656)
T PRK15174 281 S------DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMY------------------------------ 324 (656)
T ss_pred C------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH------------------------------
Confidence 6 6788999999999999999999999999999877644322222
Q ss_pred HHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHH
Q 000742 320 TRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKA 399 (1313)
Q Consensus 320 ~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A 399 (1313)
+..+...+++++|+..+++++.. .|..+..+..+|.++...|++++|
T Consensus 325 ---------------------------a~~l~~~G~~~eA~~~l~~al~~------~P~~~~~~~~~a~al~~~G~~deA 371 (656)
T PRK15174 325 ---------------------------ARALRQVGQYTAASDEFVQLARE------KGVTSKWNRYAAAALLQAGKTSEA 371 (656)
T ss_pred ---------------------------HHHHHHCCCHHHHHHHHHHHHHh------CccchHHHHHHHHHHHHCCCHHHH
Confidence 22333344455555555555442 233445666779999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 000742 400 IKWYTKSWEMYKSI 413 (1313)
Q Consensus 400 ~~~~~kal~l~~~~ 413 (1313)
+.+|+++++..+..
T Consensus 372 ~~~l~~al~~~P~~ 385 (656)
T PRK15174 372 ESVFEHYIQARASH 385 (656)
T ss_pred HHHHHHHHHhChhh
Confidence 99999999987753
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=3.4e-19 Score=190.59 Aligned_cols=376 Identities=15% Similarity=0.140 Sum_probs=248.5
Q ss_pred hHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHH
Q 000742 7 QMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKD 86 (1313)
Q Consensus 7 ~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~ 86 (1313)
.+.+|+..|+..++..--+.....-.++|++|+...+|.+|+++|+.|+...+.. .......++.++|..+.+.|.|+.
T Consensus 216 m~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsi-nk~~rikil~nigvtfiq~gqy~d 294 (840)
T KOG2003|consen 216 MTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSI-NKDMRIKILNNIGVTFIQAGQYDD 294 (840)
T ss_pred HHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhcccc-chhhHHHHHhhcCeeEEecccchh
Confidence 3456666666665543222223335589999999999999999999999988765 334457899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHH--------------------
Q 000742 87 ALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKL-------------------- 146 (1313)
Q Consensus 87 A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l-------------------- 146 (1313)
|+..| +..++.+|+... -+++-.+++.+ |+-++-.+.|++.+.+
T Consensus 295 ainsf-dh~m~~~pn~~a-------~~nl~i~~f~i--------~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l 358 (840)
T KOG2003|consen 295 AINSF-DHCMEEAPNFIA-------ALNLIICAFAI--------GDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL 358 (840)
T ss_pred hHhhH-HHHHHhCccHHh-------hhhhhhhheec--------CcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH
Confidence 99999 999998887643 33444444443 3333333333333222
Q ss_pred ---------------------------HHHhccCCCCC--------------cchhhHHHHHHHHHHHHHHHHcCCHHHH
Q 000742 147 ---------------------------AQTLKENPATS--------------RSSFLKEYIDAHNNIGMLQMELDNLEEA 185 (1313)
Q Consensus 147 ---------------------------~~~~~~~~~~~--------------~~~~~p~~~~~~~~la~~y~~~g~~~~A 185 (1313)
..++-.+.... .+.+.|.....-.+.|..|.+.|+++.|
T Consensus 359 l~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~a 438 (840)
T KOG2003|consen 359 LNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGA 438 (840)
T ss_pred HHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHH
Confidence 11110000000 0011122223344567778889999999
Q ss_pred HHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhc
Q 000742 186 KKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELR--MWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQ 263 (1313)
Q Consensus 186 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g--~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g 263 (1313)
++.++-. .+ .+......+-.+|..+++.+| ++..|..|...|+.+.+ ..+.++.+.|.+-+..|
T Consensus 439 ieilkv~----~~----kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr------yn~~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 439 IEILKVF----EK----KDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR------YNAAALTNKGNIAFANG 504 (840)
T ss_pred HHHHHHH----Hh----ccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc------cCHHHhhcCCceeeecC
Confidence 8876433 22 334445566778877777744 89999999999999877 78889999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHH
Q 000742 264 KYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASL 343 (1313)
Q Consensus 264 ~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l 343 (1313)
++++|.++|++|+.-+... ..+++++|-.+++++.++++.+.+-++..+. .+.+..+
T Consensus 505 d~dka~~~ykeal~ndasc-------~ealfniglt~e~~~~ldeald~f~klh~il----------------~nn~evl 561 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASC-------TEALFNIGLTAEALGNLDEALDCFLKLHAIL----------------LNNAEVL 561 (840)
T ss_pred cHHHHHHHHHHHHcCchHH-------HHHHHHhcccHHHhcCHHHHHHHHHHHHHHH----------------HhhHHHH
Confidence 9999999999999765432 3477889999999999998887776665542 2344556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHH
Q 000742 344 DRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAK 423 (1313)
Q Consensus 344 ~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~ 423 (1313)
-.++.+|..+.+..+|++++.++..+. |..+.++..+|.+|-+.|+..+|..++-.....++ ....+.
T Consensus 562 ~qianiye~led~aqaie~~~q~~sli------p~dp~ilskl~dlydqegdksqafq~~ydsyryfp------~nie~i 629 (840)
T KOG2003|consen 562 VQIANIYELLEDPAQAIELLMQANSLI------PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFP------CNIETI 629 (840)
T ss_pred HHHHHHHHHhhCHHHHHHHHHHhcccC------CCCHHHHHHHHHHhhcccchhhhhhhhhhcccccC------cchHHH
Confidence 677777777778888887777765432 44446666666666666666666665544443332 333444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 000742 424 VNMGNVLDSNGDWAGALDAFQEGYR 448 (1313)
Q Consensus 424 ~~lg~~y~~~g~~~~A~~~~~kAl~ 448 (1313)
.++|..|....-+++|+.||++|.-
T Consensus 630 ewl~ayyidtqf~ekai~y~ekaal 654 (840)
T KOG2003|consen 630 EWLAAYYIDTQFSEKAINYFEKAAL 654 (840)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 5555555555555566666555543
No 32
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=9.5e-18 Score=214.34 Aligned_cols=410 Identities=10% Similarity=0.020 Sum_probs=291.1
Q ss_pred chhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccC
Q 000742 4 DEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEH 83 (1313)
Q Consensus 4 ~~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 83 (1313)
..|+.++|++.+.++....+....+ +..+|.++...|++++|+..|+++++..+. ...++..+|.++...|+
T Consensus 27 ~~g~~~~A~~~~~~~~~~~~~~a~~--~~~lA~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 27 WAGQDAEVITVYNRYRVHMQLPARG--YAAVAVAYRNLKQWQNSLTLWQKALSLEPQ------NDDYQRGLILTLADAGQ 98 (765)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCC
Confidence 3578999999999998877776555 889999999999999999999999988632 26778899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhH
Q 000742 84 FKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLK 163 (1313)
Q Consensus 84 ~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p 163 (1313)
+++|+.++ +++++..|... . +..+|.++... |++++|+..++++++. .|
T Consensus 99 ~~eA~~~l-~~~l~~~P~~~------~-~~~la~~l~~~--------g~~~~Al~~l~~al~~---------------~P 147 (765)
T PRK10049 99 YDEALVKA-KQLVSGAPDKA------N-LLALAYVYKRA--------GRHWDELRAMTQALPR---------------AP 147 (765)
T ss_pred HHHHHHHH-HHHHHhCCCCH------H-HHHHHHHHHHC--------CCHHHHHHHHHHHHHh---------------CC
Confidence 99999999 99999876553 3 67889999887 9999999999999998 34
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHH-----HHcCCH---HHHHHHHHHH
Q 000742 164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVY-----MELRMW---DKSREHIEQD 235 (1313)
Q Consensus 164 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y-----~~~g~~---~~A~~~~~ka 235 (1313)
....++..+|.++...+..++|+..++++.. .+.. ...........+..++ ...+++ ++|++.++++
T Consensus 148 ~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~----~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~l 222 (765)
T PRK10049 148 QTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAE----KRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDAL 222 (765)
T ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHH----HHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHH
Confidence 5577888899999999999999999987765 2210 0000111122222222 223345 7889999988
Q ss_pred HHHHHHhch-hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccC-hhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 000742 236 IIICKKIEH-CQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMED-EDALASQIDQNIETVKKAIEVMDELKKEE 313 (1313)
Q Consensus 236 l~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~-~~~~~~~~~~~lg~~~~a~~~~~~a~~~~ 313 (1313)
++..+...+ .+....+......++...|++++|+..|+++++..+..+. .....+.++..+|++.+|+..|+++....
T Consensus 223 l~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~ 302 (765)
T PRK10049 223 EALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHP 302 (765)
T ss_pred HhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcC
Confidence 877554322 2334445444233446779999999999998877432222 12224556667777777776666554211
Q ss_pred HHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCch--hhHHHHH
Q 000742 314 QNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASEL-------CDKG--KLSDSFL 384 (1313)
Q Consensus 314 ~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~-------~~~~--~~a~~~~ 384 (1313)
+ ...... ......++..+...+++++|..+++++....... ...| ....++.
T Consensus 303 p-------------~~~~~~------~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~ 363 (765)
T PRK10049 303 E-------------TIADLS------DEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQS 363 (765)
T ss_pred C-------------CCCCCC------hHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHH
Confidence 0 000000 0113445556678899999999988887653210 1111 2346778
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q 000742 385 VIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALE 464 (1313)
Q Consensus 385 ~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~~~~~~al~ 464 (1313)
.+|.++...|++++|+..+++++...| ....++..+|.++...|++++|+..+++|+++. +++ ..++.
T Consensus 364 ~~a~~l~~~g~~~eA~~~l~~al~~~P------~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~--Pd~----~~l~~ 431 (765)
T PRK10049 364 LLSQVAKYSNDLPQAEMRARELAYNAP------GNQGLRIDYASVLQARGWPRAAENELKKAEVLE--PRN----INLEV 431 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCC----hHHHH
Confidence 899999999999999999999997754 556789999999999999999999999999975 222 23555
Q ss_pred hhHHHHHHhhcCHHHHHHHHHHHHH
Q 000742 465 NMHYSHMIRFDNIEEARRLQHEIDK 489 (1313)
Q Consensus 465 ~L~~~~~~~~~~~~~a~~~~e~~~~ 489 (1313)
.++..+. ..++.++|....+.+..
T Consensus 432 ~~a~~al-~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 432 EQAWTAL-DLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHH-HhCCHHHHHHHHHHHHH
Confidence 6666543 44556666666555544
No 33
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.80 E-value=4.8e-17 Score=194.10 Aligned_cols=211 Identities=13% Similarity=0.080 Sum_probs=171.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHH
Q 000742 28 ARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVE 107 (1313)
Q Consensus 28 a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~ 107 (1313)
+...+..|..+...|++++|+..|+++++..+ ....++..+|.+|...|++++|+.++ ++++.... .....
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~-~~~l~~~~--~~~~~ 105 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDP------ETVELHLALGNLFRRRGEVDRAIRIH-QNLLSRPD--LTREQ 105 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCc------ccHHHHHHHHHHHHHcCcHHHHHHHH-HHHhcCCC--CCHHH
Confidence 34466789999999999999999999998753 23678999999999999999999999 88876321 12223
Q ss_pred HHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHH
Q 000742 108 QQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKK 187 (1313)
Q Consensus 108 ~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~ 187 (1313)
...++..+|.+|... |++++|+.+|+++++. .|....++..++.++...|++++|++
T Consensus 106 ~~~~~~~La~~~~~~--------g~~~~A~~~~~~~l~~---------------~~~~~~~~~~la~~~~~~g~~~~A~~ 162 (389)
T PRK11788 106 RLLALQELGQDYLKA--------GLLDRAEELFLQLVDE---------------GDFAEGALQQLLEIYQQEKDWQKAID 162 (389)
T ss_pred HHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHcC---------------CcchHHHHHHHHHHHHHhchHHHHHH
Confidence 346788999999987 9999999999998865 12346788999999999999999999
Q ss_pred HHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHH
Q 000742 188 FLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDE 267 (1313)
Q Consensus 188 ~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 267 (1313)
.++++++..+. .........+..+|.++...|++++|+.+|+++++..+ ....++..+|.+|...|++++
T Consensus 163 ~~~~~~~~~~~----~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~ 232 (389)
T PRK11788 163 VAERLEKLGGD----SLRVEIAHFYCELAQQALARGDLDAARALLKKALAADP------QCVRASILLGDLALAQGDYAA 232 (389)
T ss_pred HHHHHHHhcCC----cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc------CCHHHHHHHHHHHHHCCCHHH
Confidence 99998876433 11223455678899999999999999999999998765 456788899999999999999
Q ss_pred HHHHHHHHHHHHH
Q 000742 268 AILCYQKALNLAQ 280 (1313)
Q Consensus 268 A~~~~~kal~~~~ 280 (1313)
|+++++++++..+
T Consensus 233 A~~~~~~~~~~~p 245 (389)
T PRK11788 233 AIEALERVEEQDP 245 (389)
T ss_pred HHHHHHHHHHHCh
Confidence 9999999987644
No 34
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.78 E-value=5.2e-17 Score=207.57 Aligned_cols=390 Identities=10% Similarity=-0.069 Sum_probs=269.9
Q ss_pred chhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccC
Q 000742 4 DEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEH 83 (1313)
Q Consensus 4 ~~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 83 (1313)
..+++++|.+.|+++++..|....+ +..+|.++...|++++|+..++++++..+. ... +..+|.++...|+
T Consensus 61 ~~g~~~~A~~~~~~al~~~P~~~~a--~~~la~~l~~~g~~~eA~~~l~~~l~~~P~------~~~-~~~la~~l~~~g~ 131 (765)
T PRK10049 61 NLKQWQNSLTLWQKALSLEPQNDDY--QRGLILTLADAGQYDEALVKAKQLVSGAPD------KAN-LLALAYVYKRAGR 131 (765)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHH-HHHHHHHHHHCCC
Confidence 5688999999999999999987776 779999999999999999999999988632 255 8899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhH
Q 000742 84 FKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLK 163 (1313)
Q Consensus 84 ~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p 163 (1313)
+++|+..+ ++++++.|+.. .++..+|.++... +..++|+..++++... ...... ....+
T Consensus 132 ~~~Al~~l-~~al~~~P~~~------~~~~~la~~l~~~--------~~~e~Al~~l~~~~~~-p~~~~~-----l~~~~ 190 (765)
T PRK10049 132 HWDELRAM-TQALPRAPQTQ------QYPTEYVQALRNN--------RLSAPALGAIDDANLT-PAEKRD-----LEADA 190 (765)
T ss_pred HHHHHHHH-HHHHHhCCCCH------HHHHHHHHHHHHC--------CChHHHHHHHHhCCCC-HHHHHH-----HHHHH
Confidence 99999999 99999988764 3456778888766 8888898888765531 100000 00001
Q ss_pred HHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742 164 EYIDAHNNIGMLQMELDNL---EEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICK 240 (1313)
Q Consensus 164 ~~~~~~~~la~~y~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~ 240 (1313)
....+...++..+...+++ ++|++.++++++..+.. ....+....+......++...|++++|+..|+++++..+
T Consensus 191 ~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~--p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~ 268 (765)
T PRK10049 191 AAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDN--PDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQ 268 (765)
T ss_pred HHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccC--CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCC
Confidence 1111111122222233445 78999999998775442 122233444544423344677999999999999877632
Q ss_pred HhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccC----hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000742 241 KIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMED----EDALASQIDQNIETVKKAIEVMDELKKEEQNL 316 (1313)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~----~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~ 316 (1313)
..+..+. ..+|.+|..+|++++|+.+|+++++..+.... ....+..++...+.+.+|+..++++....+..
T Consensus 269 ---~~P~~a~--~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~ 343 (765)
T PRK10049 269 ---IIPPWAQ--RWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPF 343 (765)
T ss_pred ---CCCHHHH--HHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCce
Confidence 1123333 33689999999999999999999876543311 11222334556666666666666554221110
Q ss_pred HHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCH
Q 000742 317 KKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKF 396 (1313)
Q Consensus 317 ~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~ 396 (1313)
..+. ......++.. ....+..++..+...+++++|++.+++++... |....++..+|.++...|++
T Consensus 344 ~~~~---~~~~~~p~~~-----~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~------P~n~~l~~~lA~l~~~~g~~ 409 (765)
T PRK10049 344 LRLY---GSPTSIPNDD-----WLQGQSLLSQVAKYSNDLPQAEMRARELAYNA------PGNQGLRIDYASVLQARGWP 409 (765)
T ss_pred Eeec---CCCCCCCCch-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHhcCCH
Confidence 0000 0001111110 01123455667778899999999998887653 55578999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000742 397 NKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIA 450 (1313)
Q Consensus 397 ~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~ 450 (1313)
++|+..+++++++.| ....+++.+|.++...|+|++|...++++++..
T Consensus 410 ~~A~~~l~~al~l~P------d~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 410 RAAENELKKAEVLEP------RNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHHHHhhCC------CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 999999999998764 556688999999999999999999999999864
No 35
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=8e-18 Score=191.78 Aligned_cols=291 Identities=17% Similarity=0.219 Sum_probs=235.7
Q ss_pred hhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChH
Q 000742 6 MQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFK 85 (1313)
Q Consensus 6 ~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~ 85 (1313)
-+..+|+..|++.-...+... ..+.++|.+|+..++|++|.++|+.+-++.+- ..+..-....+++.+.+-
T Consensus 333 y~~~~A~~~~~klp~h~~nt~--wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~------rv~~meiyST~LWHLq~~- 403 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTG--WVLSQLGRAYFELIEYDQAERIFSLVRRIEPY------RVKGMEIYSTTLWHLQDE- 403 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc------cccchhHHHHHHHHHHhh-
Confidence 456788888888655555555 44889999999999999999999998777632 233333445555555443
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHH
Q 000742 86 DALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEY 165 (1313)
Q Consensus 86 ~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~ 165 (1313)
-++.++.+..++..+..+ .+|..+|.+|.-+ ++++.|+++|++|+++ .|.+
T Consensus 404 v~Ls~Laq~Li~~~~~sP------esWca~GNcfSLQ--------kdh~~Aik~f~RAiQl---------------dp~f 454 (638)
T KOG1126|consen 404 VALSYLAQDLIDTDPNSP------ESWCALGNCFSLQ--------KDHDTAIKCFKRAIQL---------------DPRF 454 (638)
T ss_pred HHHHHHHHHHHhhCCCCc------HHHHHhcchhhhh--------hHHHHHHHHHHHhhcc---------------CCcc
Confidence 344444133334433333 5799999999987 9999999999999998 5678
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchh
Q 000742 166 IDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHC 245 (1313)
Q Consensus 166 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~ 245 (1313)
+.+|..+|.-+....+||+|..+|++|+.. ++....+|+.+|.+|.++++++.|.-+|++|+++.|
T Consensus 455 aYayTLlGhE~~~~ee~d~a~~~fr~Al~~---------~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP----- 520 (638)
T KOG1126|consen 455 AYAYTLLGHESIATEEFDKAMKSFRKALGV---------DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINP----- 520 (638)
T ss_pred chhhhhcCChhhhhHHHHhHHHHHHhhhcC---------CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCc-----
Confidence 999999999999999999999999999998 555789999999999999999999999999999987
Q ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742 246 QGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMII 325 (1313)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~ 325 (1313)
........+|.++.+.|+.++|+.+|++|+.+++...-.....+.++..++++.+|+..+++.+
T Consensus 521 -~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk--------------- 584 (638)
T KOG1126|consen 521 -SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELK--------------- 584 (638)
T ss_pred -cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHH---------------
Confidence 7788899999999999999999999999999999887766666666666666666665555442
Q ss_pred hhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Q 000742 326 AKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTK 405 (1313)
Q Consensus 326 ~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~k 405 (1313)
+ -.|+++.+++.+|.+|.++|+.+.|+..|--
T Consensus 585 ------------------------------------------~------~vP~es~v~~llgki~k~~~~~~~Al~~f~~ 616 (638)
T KOG1126|consen 585 ------------------------------------------E------LVPQESSVFALLGKIYKRLGNTDLALLHFSW 616 (638)
T ss_pred ------------------------------------------H------hCcchHHHHHHHHHHHHHHccchHHHHhhHH
Confidence 2 2377889999999999999999999999999
Q ss_pred HHHHHHH
Q 000742 406 SWEMYKS 412 (1313)
Q Consensus 406 al~l~~~ 412 (1313)
|+.+.+.
T Consensus 617 A~~ldpk 623 (638)
T KOG1126|consen 617 ALDLDPK 623 (638)
T ss_pred HhcCCCc
Confidence 9988764
No 36
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.9e-15 Score=168.33 Aligned_cols=378 Identities=16% Similarity=0.166 Sum_probs=271.4
Q ss_pred hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccCh
Q 000742 5 EMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHF 84 (1313)
Q Consensus 5 ~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~ 84 (1313)
.|+|+.|+..|..|+.++|.+... |-+...+|...|+|++|++--.+.+++. +..+..|..+|..+..+|+|
T Consensus 15 ~~d~~~ai~~~t~ai~l~p~nhvl--ySnrsaa~a~~~~~~~al~da~k~~~l~------p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIMLSPTNHVL--YSNRSAAYASLGSYEKALKDATKTRRLN------PDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred cccHHHHHHHHHHHHccCCCccch--hcchHHHHHHHhhHHHHHHHHHHHHhcC------CchhhHHHHhHHHHHhcccH
Confidence 589999999999999999997666 8899999999999999999999998887 44589999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccC-------------CcchhhHHHHHHHH-----------
Q 000742 85 KDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRS-------------DDDHYSIRNAKKYF----------- 140 (1313)
Q Consensus 85 ~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~-------------~~~~~~~~~A~~~~----------- 140 (1313)
++|+..| .+.|+..+.+.. .+.+++.++....... ..-..++-..-..|
T Consensus 87 ~eA~~ay-~~GL~~d~~n~~------L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p 159 (539)
T KOG0548|consen 87 EEAILAY-SEGLEKDPSNKQ------LKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNP 159 (539)
T ss_pred HHHHHHH-HHHhhcCCchHH------HHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCc
Confidence 9999999 999998876642 2333333331110000 00000000000111
Q ss_pred ------------HHHHHHHHHhc--------------cCCC-----CC--cchh------hHHHHHHHHHHHHHHHHcCC
Q 000742 141 ------------KSAMKLAQTLK--------------ENPA-----TS--RSSF------LKEYIDAHNNIGMLQMELDN 181 (1313)
Q Consensus 141 ------------~~Al~l~~~~~--------------~~~~-----~~--~~~~------~p~~~~~~~~la~~y~~~g~ 181 (1313)
.+++-...... ...+ .. .... ....+...-.+|...+...+
T Consensus 160 ~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~ 239 (539)
T KOG0548|consen 160 TSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKD 239 (539)
T ss_pred HhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 11111100000 0000 00 0001 12256678899999999999
Q ss_pred HHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHH
Q 000742 182 LEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKI-EHCQGEAKGYINLGELHY 260 (1313)
Q Consensus 182 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~-~~~~~~~~~~~~la~~~~ 260 (1313)
+..|++.|.+++++. .....+.+.+-+|+.+|.+.+++....++++..... .+....+.++..+|..|.
T Consensus 240 f~~a~q~y~~a~el~----------~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~ 309 (539)
T KOG0548|consen 240 FETAIQHYAKALELA----------TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYT 309 (539)
T ss_pred HHHHHHHHHHHHhHh----------hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhh
Confidence 999999999999994 245677899999999999999999999988876654 334456777778999999
Q ss_pred HhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHH
Q 000742 261 RVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQN 340 (1313)
Q Consensus 261 ~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~ 340 (1313)
.+++++.|+.+|++++.-... ..+...+..+.++++..+.. ..+.+.. +
T Consensus 310 k~~~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~-------a~~~pe~----------------A 358 (539)
T KOG0548|consen 310 KREDYEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERK-------AYINPEK----------------A 358 (539)
T ss_pred hHHhHHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHH-------HhhChhH----------------H
Confidence 999999999999998876543 11222333333333332221 1111111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHH
Q 000742 341 ASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQA 420 (1313)
Q Consensus 341 ~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~ 420 (1313)
.....-|..+...++|..|+.+|.+++.. .|..+..|.+.|.+|.++|++..|+...++++++. +...
T Consensus 359 ~e~r~kGne~Fk~gdy~~Av~~YteAIkr------~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~------p~~~ 426 (539)
T KOG0548|consen 359 EEEREKGNEAFKKGDYPEAVKHYTEAIKR------DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELD------PNFI 426 (539)
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhc------CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC------chHH
Confidence 11222366778889999999999997653 38888999999999999999999999999999884 4677
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000742 421 LAKVNMGNVLDSNGDWAGALDAFQEGYRIA 450 (1313)
Q Consensus 421 ~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~ 450 (1313)
.+|...|.++..+.+|++|++.|+++++..
T Consensus 427 kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 427 KAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 889999999999999999999999999875
No 37
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.76 E-value=8.2e-20 Score=214.16 Aligned_cols=368 Identities=18% Similarity=0.159 Sum_probs=210.8
Q ss_pred CeEEecCCCCCcCCHHHHHHHhhcCCCcCEEEecCCCCCHHHHHHHHHHHHhcccCccceEEEccCCCCCHHHHHHHHhc
Q 000742 833 DEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICEC 912 (1313)
Q Consensus 833 ~~l~l~~~~l~~~~~~~l~~~L~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~~~~l~~L~Ls~n~l~~~~~~~l~~~ 912 (1313)
..|+++.|.+-+.....+ ..+-+|++|||++|.+++-++. +.. .+.|..|++++|.|...+. .+.
T Consensus 24 ~~ln~~~N~~l~~pl~~~----~~~v~L~~l~lsnn~~~~fp~~-it~-------l~~L~~ln~s~n~i~~vp~-s~~-- 88 (1081)
T KOG0618|consen 24 QILNLRRNSLLSRPLEFV----EKRVKLKSLDLSNNQISSFPIQ-ITL-------LSHLRQLNLSRNYIRSVPS-SCS-- 88 (1081)
T ss_pred HhhhccccccccCchHHh----hheeeeEEeeccccccccCCch-hhh-------HHHHhhcccchhhHhhCch-hhh--
Confidence 447788887766543322 2234599999999998874422 111 2336788999998866653 222
Q ss_pred ccCCCCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCcc----------------
Q 000742 913 PVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLA---------------- 976 (1313)
Q Consensus 913 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~---------------- 976 (1313)
.+.+|++|+|.+|.+.. ++..+..+++|+.|+++.|.++. ++..+..+..+.
T Consensus 89 --~~~~l~~lnL~~n~l~~-----lP~~~~~lknl~~LdlS~N~f~~-----~Pl~i~~lt~~~~~~~s~N~~~~~lg~~ 156 (1081)
T KOG0618|consen 89 --NMRNLQYLNLKNNRLQS-----LPASISELKNLQYLDLSFNHFGP-----IPLVIEVLTAEEELAASNNEKIQRLGQT 156 (1081)
T ss_pred --hhhcchhheeccchhhc-----CchhHHhhhcccccccchhccCC-----CchhHHhhhHHHHHhhhcchhhhhhccc
Confidence 34899999999998774 66778888899999999998873 222333333333
Q ss_pred ---EEEeCCCCCCChhhHHHHHHhhccCCccceeecCCCCCChHHHHHHHHHh--------------hcCC---------
Q 000742 977 ---QLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLA--------------KTSC--------- 1030 (1313)
Q Consensus 977 ---~L~Ls~n~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~l~--------------~~~~--------- 1030 (1313)
.+++..|.+ .+. ++..+..+.. .|+|..|.++......+..+. ..++
T Consensus 157 ~ik~~~l~~n~l-~~~----~~~~i~~l~~--~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n 229 (1081)
T KOG0618|consen 157 SIKKLDLRLNVL-GGS----FLIDIYNLTH--QLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHN 229 (1081)
T ss_pred cchhhhhhhhhc-ccc----hhcchhhhhe--eeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccC
Confidence 444443331 111 1111222222 366776666522111111110 0123
Q ss_pred -------------ccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCCChhH------------------HHHHH
Q 000742 1031 -------------LTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTC------------------IHKFT 1079 (1313)
Q Consensus 1031 -------------L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~------------------~~~l~ 1079 (1313)
|+.++++.|.++. +++ ....+.+|+.|+..+|+|+..- +.+++
T Consensus 230 ~l~~~~~~p~p~nl~~~dis~n~l~~-----lp~-wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip 303 (1081)
T KOG0618|consen 230 PLTTLDVHPVPLNLQYLDISHNNLSN-----LPE-WIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIP 303 (1081)
T ss_pred cceeeccccccccceeeecchhhhhc-----chH-HHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCC
Confidence 4444444444332 221 1123345666666666553321 11122
Q ss_pred HHHhcCCCccEEEccCCCCChHHHHHHHHHhc--------------------CCCCceeEEEeecCCCCHHHHHHHHHHh
Q 000742 1080 ASVSLVHGILELNLGGNPIMKEGANALASLLM--------------------NPQCCLKVLVLSKCQLGLAGVLQLIKAL 1139 (1313)
Q Consensus 1080 ~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~--------------------~~~~~L~~L~Ls~n~i~~~g~~~l~~~l 1139 (1313)
..+...++|++|||..|.|.......+..... ...+.|+.|.+.+|.+++. ....|
T Consensus 304 ~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~----c~p~l 379 (1081)
T KOG0618|consen 304 PFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDS----CFPVL 379 (1081)
T ss_pred CcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccccc----chhhh
Confidence 22334556777777777765322211111100 0123466777777777766 33456
Q ss_pred hcCCCccEEEccCCCCChhhhhh--hcccccccCCcccccccccccccccccccccccccCCCCcccccccCCccchhhh
Q 000742 1140 SENDTLEELNLADNASKELTLQQ--NLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIRVES 1217 (1313)
Q Consensus 1140 ~~~~~L~~L~Ls~N~i~~~~~~~--~l~~l~~~~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 1217 (1313)
.+.++|+.|+|++|+++...... .+..|+.++|++|.++.+| ..+.+|..|++|..-+|.+...+
T Consensus 380 ~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-------------~tva~~~~L~tL~ahsN~l~~fP 446 (1081)
T KOG0618|consen 380 VNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-------------DTVANLGRLHTLRAHSNQLLSFP 446 (1081)
T ss_pred ccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh-------------HHHHhhhhhHHHhhcCCceeech
Confidence 67777888888888766542221 2355667778888777766 34566777777777777775543
Q ss_pred ccccCCCCcccccccCCccchhhHH-HHHHHHhccccCceecCCCCC
Q 000742 1218 AASGFDNSCTSSCQKNSSFECQFVQ-ELSSAIGMAKPLQLLDLSNNG 1263 (1313)
Q Consensus 1218 ~~~~~~~~~~~~L~~L~Ls~n~l~~-~l~~~l~~~~~L~~LdLs~N~ 1263 (1313)
. ..-...|+.+|||.|++.. .++..+.. |+|++|||+||.
T Consensus 447 e-----~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 447 E-----LAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred h-----hhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence 2 2334589999999999984 44555544 899999999997
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.1e-15 Score=166.12 Aligned_cols=202 Identities=13% Similarity=0.077 Sum_probs=131.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHH
Q 000742 213 HNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQI 292 (1313)
Q Consensus 213 ~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~ 292 (1313)
.-+|+.|...++.++|+.||++|+++.+ ....+|..+|.-|..+++...|+..|+.|+++.|.....+..++++
T Consensus 334 CiIaNYYSlr~eHEKAv~YFkRALkLNp------~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQa 407 (559)
T KOG1155|consen 334 CIIANYYSLRSEHEKAVMYFKRALKLNP------KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQA 407 (559)
T ss_pred eeehhHHHHHHhHHHHHHHHHHHHhcCc------chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHH
Confidence 3345556666666666666666666654 4555666666666666666666666666666666555544444444
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742 293 DQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASE 372 (1313)
Q Consensus 293 ~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~ 372 (1313)
|.-++....|+-+|+++....+.-.. .+..||+.|...++.++|++.|+.++.....
T Consensus 408 Yeim~Mh~YaLyYfqkA~~~kPnDsR-----------------------lw~aLG~CY~kl~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 408 YEIMKMHFYALYYFQKALELKPNDSR-----------------------LWVALGECYEKLNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred HHHhcchHHHHHHHHHHHhcCCCchH-----------------------HHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence 44444444444444444322111111 1455666777777777788888888766544
Q ss_pred hCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCC-chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000742 373 LCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGN-LEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRI 449 (1313)
Q Consensus 373 ~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~-~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i 449 (1313)
...++..+|.+|.+++++++|..+|++.++.....+. .+....+...||.-+.++++|++|-.|..+++.-
T Consensus 465 ------e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 465 ------EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred ------chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 3388999999999999999999999999987644333 2335666777999999999999999988877653
No 39
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.76 E-value=4e-20 Score=196.65 Aligned_cols=126 Identities=19% Similarity=0.163 Sum_probs=88.1
Q ss_pred EEEeecCCCCHHHHHHHHHHhhcCCCccEEEccCCCCChhhhhh-hcccccccCCccccccccccccccccccccccccc
Q 000742 1119 VLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASKELTLQQ-NLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMN 1197 (1313)
Q Consensus 1119 ~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~-~l~~l~~~~l~~n~~~~~~~~~~~~~~~~~~~~~~ 1197 (1313)
.+.+++|.++ .++..++..++|+.|+|++|.+.+....+ -+..|+.++++.|.+..+|. .+
T Consensus 416 ~l~lsnn~is-----fv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~-------------~~ 477 (565)
T KOG0472|consen 416 DLVLSNNKIS-----FVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPE-------------CL 477 (565)
T ss_pred HHHhhcCccc-----cchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchH-------------HH
Confidence 3455555554 24455677778888888888777663322 12457788888887777663 12
Q ss_pred CCCCcccccccCCccchhhhccccCCCCcccccccCCccchhhHHHHHHHHhccccCceecCCCCCCCH
Q 000742 1198 TDCNDLEVADSEDDKIRVESAASGFDNSCTSSCQKNSSFECQFVQELSSAIGMAKPLQLLDLSNNGFST 1266 (1313)
Q Consensus 1198 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~l~~~l~~~~~L~~LdLs~N~l~~ 1266 (1313)
--+..|+.+-.++|++....+. --..+.+|..|||.+|.+ +.+|..+++|.+|++|+|+||+|.-
T Consensus 478 y~lq~lEtllas~nqi~~vd~~---~l~nm~nL~tLDL~nNdl-q~IPp~LgnmtnL~hLeL~gNpfr~ 542 (565)
T KOG0472|consen 478 YELQTLETLLASNNQIGSVDPS---GLKNMRNLTTLDLQNNDL-QQIPPILGNMTNLRHLELDGNPFRQ 542 (565)
T ss_pred hhHHHHHHHHhccccccccChH---HhhhhhhcceeccCCCch-hhCChhhccccceeEEEecCCccCC
Confidence 2245677777777888666442 112345999999999996 5588999999999999999999984
No 40
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.74 E-value=2.9e-16 Score=187.36 Aligned_cols=235 Identities=16% Similarity=0.096 Sum_probs=191.4
Q ss_pred chhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccC
Q 000742 4 DEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEH 83 (1313)
Q Consensus 4 ~~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 83 (1313)
..+++++|+..|+++++.+|....+ +..+|.+|...|++++|+..+++++.... ........++..+|.+|...|+
T Consensus 47 ~~~~~~~A~~~~~~al~~~p~~~~~--~~~la~~~~~~g~~~~A~~~~~~~l~~~~--~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVDPETVEL--HLALGNLFRRRGEVDRAIRIHQNLLSRPD--LTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred hcCChHHHHHHHHHHHhcCcccHHH--HHHHHHHHHHcCcHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHHHHCCC
Confidence 3578999999999999998876555 88999999999999999999998876310 0111124678899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhH
Q 000742 84 FKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLK 163 (1313)
Q Consensus 84 ~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p 163 (1313)
+++|+.+| +++++..+. ...++..++.+|... |++++|++.++++++.... .. ..
T Consensus 123 ~~~A~~~~-~~~l~~~~~------~~~~~~~la~~~~~~--------g~~~~A~~~~~~~~~~~~~---~~-------~~ 177 (389)
T PRK11788 123 LDRAEELF-LQLVDEGDF------AEGALQQLLEIYQQE--------KDWQKAIDVAERLEKLGGD---SL-------RV 177 (389)
T ss_pred HHHHHHHH-HHHHcCCcc------hHHHHHHHHHHHHHh--------chHHHHHHHHHHHHHhcCC---cc-------hH
Confidence 99999999 999876332 235788899999987 9999999999998765211 00 11
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000742 164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIE 243 (1313)
Q Consensus 164 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~ 243 (1313)
..+..+..+|.++...|++++|+.+|+++++..+. ...++..+|.+|...|++++|++++++++...+
T Consensus 178 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p--- 245 (389)
T PRK11788 178 EIAHFYCELAQQALARGDLDAARALLKKALAADPQ---------CVRASILLGDLALAQGDYAAAIEALERVEEQDP--- 245 (389)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC---------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh---
Confidence 34556788999999999999999999999987432 356888999999999999999999999998754
Q ss_pred hhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 000742 244 HCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQS 281 (1313)
Q Consensus 244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~ 281 (1313)
.....++..++.+|...|++++|+.+++++++..|.
T Consensus 246 --~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~ 281 (389)
T PRK11788 246 --EYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPG 281 (389)
T ss_pred --hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 234567889999999999999999999999987653
No 41
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.74 E-value=1e-15 Score=164.26 Aligned_cols=382 Identities=15% Similarity=0.147 Sum_probs=255.3
Q ss_pred chhhHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHH
Q 000742 4 DEMQMSEAKRAYRSAKEEGNR---QEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLR 80 (1313)
Q Consensus 4 ~~~~~~~A~~~l~~a~~~~~~---~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~ 80 (1313)
.++.|.+|+++|+.|+..-|. .....++.++|..+.+.|+|+.|+..|+...+..+. ..+-+++..+++.
T Consensus 249 kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn-------~~a~~nl~i~~f~ 321 (840)
T KOG2003|consen 249 KKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPN-------FIAALNLIICAFA 321 (840)
T ss_pred ehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCcc-------HHhhhhhhhhhee
Confidence 467899999999999886553 556778999999999999999999999998887643 3455677788888
Q ss_pred ccChHHHHHHHHHHHHHHHHHh---------cC--HHHHHHHHH-----H-----------------------------H
Q 000742 81 LEHFKDALIYQVKKHLELAKDA---------SD--LVEQQRACT-----Q-----------------------------L 115 (1313)
Q Consensus 81 ~g~~~~A~~~~~~kal~l~~~~---------~~--~~~~a~a~~-----~-----------------------------l 115 (1313)
.|+-++-.+.| .+.+.+-... .+ ......+.. + .
T Consensus 322 i~d~ekmkeaf-~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~ 400 (840)
T KOG2003|consen 322 IGDAEKMKEAF-QKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA 400 (840)
T ss_pred cCcHHHHHHHH-HHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc
Confidence 88888887777 7766542111 01 000000000 0 0
Q ss_pred H--HHHHHHhc--c-CCcchhhHHHHHHH-----HHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHc--CCHH
Q 000742 116 G--RTYYEMFL--R-SDDDHYSIRNAKKY-----FKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMEL--DNLE 183 (1313)
Q Consensus 116 g--~~y~~l~~--~-~~~~~~~~~~A~~~-----~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~--g~~~ 183 (1313)
| ++...+.. + .....-...+|.++ ++.|+++.+-+..... .....+..++..+++.+ .++.
T Consensus 401 g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdn-------k~~saaa~nl~~l~flqggk~~~ 473 (840)
T KOG2003|consen 401 GCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDN-------KTASAAANNLCALRFLQGGKDFA 473 (840)
T ss_pred ccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccc-------hhhHHHhhhhHHHHHHhcccchh
Confidence 0 00000000 0 00000011122222 2233444333322221 12345667777777764 4789
Q ss_pred HHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhc
Q 000742 184 EAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQ 263 (1313)
Q Consensus 184 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g 263 (1313)
+|..|...|+.+ +...+.++.+.|.+-+..|++++|.+.|++|+.-.. .-..+++++|..+..+|
T Consensus 474 ~aqqyad~aln~---------dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nda------sc~ealfniglt~e~~~ 538 (840)
T KOG2003|consen 474 DAQQYADIALNI---------DRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA------SCTEALFNIGLTAEALG 538 (840)
T ss_pred HHHHHHHHHhcc---------cccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCch------HHHHHHHHhcccHHHhc
Confidence 999999999887 444677899999999999999999999999987544 67889999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHH
Q 000742 264 KYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASL 343 (1313)
Q Consensus 264 ~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l 343 (1313)
+.++|+++|-+.-.+...... ++..++.+|+.++.-.++++.+-+...+ ...++ ..+
T Consensus 539 ~ldeald~f~klh~il~nn~e-------vl~qianiye~led~aqaie~~~q~~sl------ip~dp----------~il 595 (840)
T KOG2003|consen 539 NLDEALDCFLKLHAILLNNAE-------VLVQIANIYELLEDPAQAIELLMQANSL------IPNDP----------AIL 595 (840)
T ss_pred CHHHHHHHHHHHHHHHHhhHH-------HHHHHHHHHHHhhCHHHHHHHHHHhccc------CCCCH----------HHH
Confidence 999999999998877765544 3344444444444444443322222221 12222 126
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHH
Q 000742 344 DRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAK 423 (1313)
Q Consensus 344 ~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~ 423 (1313)
..|++.|...|+-.+|.+++-.... ..|-..++...+|..|....-.++|+.||++|.-+. +......
T Consensus 596 skl~dlydqegdksqafq~~ydsyr------yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliq------p~~~kwq 663 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSYR------YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ------PNQSKWQ 663 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhccc------ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC------ccHHHHH
Confidence 7778888777877777776655443 335556788889999999999999999999998654 3566777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000742 424 VNMGNVLDSNGDWAGALDAFQEGYRIA 450 (1313)
Q Consensus 424 ~~lg~~y~~~g~~~~A~~~~~kAl~i~ 450 (1313)
..+|.|+.+.|+|++|...|+..-+-+
T Consensus 664 lmiasc~rrsgnyqka~d~yk~~hrkf 690 (840)
T KOG2003|consen 664 LMIASCFRRSGNYQKAFDLYKDIHRKF 690 (840)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 889999999999999999998765543
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=7.1e-16 Score=167.49 Aligned_cols=260 Identities=19% Similarity=0.204 Sum_probs=195.0
Q ss_pred hhHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhC----------------------
Q 000742 6 MQMSEAKRAYRSAKEEG-NRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYL---------------------- 62 (1313)
Q Consensus 6 ~~~~~A~~~l~~a~~~~-~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~---------------------- 62 (1313)
.+.+++.+-++.....+ +...-. -...|.+++.+.+|++|+..|+...+..+-..
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~~~i--~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~L 318 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNSMYI--KTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYL 318 (559)
T ss_pred HHHHHHHHHHHHHHhccCCccHHH--HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHH
Confidence 35566666666555553 222222 34667777777788888877776654422110
Q ss_pred ------CCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHH
Q 000742 63 ------PEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNA 136 (1313)
Q Consensus 63 ------~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A 136 (1313)
-+...++++.-+|..|...++.++|+.|| ++|+++.|+.. .+|..+|.-|..+ .+...|
T Consensus 319 A~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YF-kRALkLNp~~~------~aWTLmGHEyvEm--------KNt~AA 383 (559)
T KOG1155|consen 319 AQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYF-KRALKLNPKYL------SAWTLMGHEYVEM--------KNTHAA 383 (559)
T ss_pred HHHHHHhccCCccceeeehhHHHHHHhHHHHHHHH-HHHHhcCcchh------HHHHHhhHHHHHh--------cccHHH
Confidence 01223455557788888889999999999 99999988764 5789999999988 889999
Q ss_pred HHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHH
Q 000742 137 KKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLG 216 (1313)
Q Consensus 137 ~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg 216 (1313)
++.|++|+++ .|....+|+.+|++|..++...-|+-||++|.+. .|...+.|..||
T Consensus 384 i~sYRrAvdi---------------~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~---------kPnDsRlw~aLG 439 (559)
T KOG1155|consen 384 IESYRRAVDI---------------NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL---------KPNDSRLWVALG 439 (559)
T ss_pred HHHHHHHHhc---------------CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc---------CCCchHHHHHHH
Confidence 9999999988 5577889999999999999999999999999888 455678999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhH
Q 000742 217 NVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNI 296 (1313)
Q Consensus 217 ~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~l 296 (1313)
.+|.++++.++|+++|.+|+.... ....++..+|.+|.++++.++|..+|++.++.....+........+..-+
T Consensus 440 ~CY~kl~~~~eAiKCykrai~~~d------te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fL 513 (559)
T KOG1155|consen 440 ECYEKLNRLEEAIKCYKRAILLGD------TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFL 513 (559)
T ss_pred HHHHHhccHHHHHHHHHHHHhccc------cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence 999999999999999999998855 46688999999999999999999999999986643333333233333447
Q ss_pred HHHHHHHHHHHHHHHH
Q 000742 297 ETVKKAIEVMDELKKE 312 (1313)
Q Consensus 297 g~~~~a~~~~~~a~~~ 312 (1313)
+.++.-.+.|+++..+
T Consensus 514 A~~f~k~~~~~~As~Y 529 (559)
T KOG1155|consen 514 AEYFKKMKDFDEASYY 529 (559)
T ss_pred HHHHHhhcchHHHHHH
Confidence 7777777777766543
No 43
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.3e-15 Score=169.86 Aligned_cols=393 Identities=13% Similarity=0.133 Sum_probs=270.6
Q ss_pred chhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccC
Q 000742 4 DEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEH 83 (1313)
Q Consensus 4 ~~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 83 (1313)
++.+|.-|+-.-.++.....++..+ +.+|.+|+..|+|+.|......- .+. .....+.+..+.++....+
T Consensus 28 ~q~~y~~a~f~adkV~~l~~dp~d~---~~~aq~l~~~~~y~ra~~lit~~-~le------~~d~~cryL~~~~l~~lk~ 97 (611)
T KOG1173|consen 28 MQHRYKTALFWADKVAGLTNDPADI---YWLAQVLYLGRQYERAAHLITTY-KLE------KRDIACRYLAAKCLVKLKE 97 (611)
T ss_pred HHHhhhHHHHHHHHHHhccCChHHH---HHHHHHHHhhhHHHHHHHHHHHh-hhh------hhhHHHHHHHHHHHHHHHH
Confidence 3566777777777777676555554 56899999999999888776543 222 2236778889999999999
Q ss_pred hHHHHHHHHHHH----H--HHHHHh---------c----CHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHH
Q 000742 84 FKDALIYQVKKH----L--ELAKDA---------S----DLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAM 144 (1313)
Q Consensus 84 ~~~A~~~~~~ka----l--~l~~~~---------~----~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al 144 (1313)
+++|+..+ .++ . ...+.. . .....+..++..|.+|..+ .+.++|...|.+|+
T Consensus 98 ~~~al~vl-~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al--------~n~~~ar~~Y~~Al 168 (611)
T KOG1173|consen 98 WDQALLVL-GRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVAL--------DNREEARDKYKEAL 168 (611)
T ss_pred HHHHHHHh-cccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhh--------ccHHHHHHHHHHHH
Confidence 99999888 632 1 111111 0 0122344555667777766 66777777776653
Q ss_pred HHH-------------------------H------------------------HhccCCCCCc---c--hhhHHHHHHHH
Q 000742 145 KLA-------------------------Q------------------------TLKENPATSR---S--SFLKEYIDAHN 170 (1313)
Q Consensus 145 ~l~-------------------------~------------------------~~~~~~~~~~---~--~~~p~~~~~~~ 170 (1313)
..- . +..+...... . .-.........
T Consensus 169 ~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~ 248 (611)
T KOG1173|consen 169 LADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLA 248 (611)
T ss_pred hcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHH
Confidence 220 0 0000000000 0 00112345566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhHhhhhc------------c-------------CCCchHHHHHHHHHHHHHHHcCCH
Q 000742 171 NIGMLQMELDNLEEAKKFLIRGLEICNEEE------------V-------------SEDDDGRSRLHHNLGNVYMELRMW 225 (1313)
Q Consensus 171 ~la~~y~~~g~~~~A~~~~~~al~~~~~~~------------~-------------~~~~~~~~~~~~~lg~~y~~~g~~ 225 (1313)
..+..++..++|.+..+..+..++..+-.. . -+..|..+..|+..|..|...|++
T Consensus 249 ~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~ 328 (611)
T KOG1173|consen 249 EKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKY 328 (611)
T ss_pred HHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCc
Confidence 678888889999999999888877643210 0 022344455677777778888888
Q ss_pred HHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHH
Q 000742 226 DKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEV 305 (1313)
Q Consensus 226 ~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~ 305 (1313)
.+|..||-||..+.+ ..+.+|...|..|...|+.++|+.+|..|-++.+...-+...++.-|..++....|-..
T Consensus 329 seARry~SKat~lD~------~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~F 402 (611)
T KOG1173|consen 329 SEARRYFSKATTLDP------TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKF 402 (611)
T ss_pred HHHHHHHHHHhhcCc------cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHH
Confidence 888888888877765 66777788888888888888888888888887777666665555555556666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-hhhHHHHH
Q 000742 306 MDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDK-GKLSDSFL 384 (1313)
Q Consensus 306 ~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~-~~~a~~~~ 384 (1313)
|.++....+.-. ..+..+|-++...+.|.+|..+++.++...+..... +.....+.
T Consensus 403 f~~A~ai~P~Dp-----------------------lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~ 459 (611)
T KOG1173|consen 403 FKQALAIAPSDP-----------------------LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLN 459 (611)
T ss_pred HHHHHhcCCCcc-----------------------hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHH
Confidence 655542222211 226777888888999999999999999666655433 34678899
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000742 385 VIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIA 450 (1313)
Q Consensus 385 ~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~ 450 (1313)
+||.+|.+++.+++|+.+|++++.+.+ ..+.++..+|.+|..+|+++.|+.+|.+|+.+.
T Consensus 460 NLGH~~Rkl~~~~eAI~~~q~aL~l~~------k~~~~~asig~iy~llgnld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 460 NLGHAYRKLNKYEEAIDYYQKALLLSP------KDASTHASIGYIYHLLGNLDKAIDHFHKALALK 519 (611)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHcCC------CchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence 999999999999999999999998765 567889999999999999999999999999885
No 44
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.72 E-value=1.5e-14 Score=151.99 Aligned_cols=345 Identities=14% Similarity=0.111 Sum_probs=269.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHH
Q 000742 31 ANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQR 110 (1313)
Q Consensus 31 ~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~ 110 (1313)
...-|.-++...++++|+..+.+.+...... ......+-.+..+..++|.|++++.+. --.+..+.+..+......
T Consensus 9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~---~~Rf~~lG~l~~a~s~~g~y~~mL~~a-~sqi~~a~~~~ds~~~~e 84 (518)
T KOG1941|consen 9 QIEKGLQLYQSNQTEKALQVWTKVLEKLSDL---MGRFRVLGCLVTAHSEMGRYKEMLKFA-VSQIDTARELEDSDFLLE 84 (518)
T ss_pred HHHHHHhHhcCchHHHHHHHHHHHHHHHHHH---HHHHHHhccchhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 4566778889999999999999998776432 334567778889999999999999999 888889998888888899
Q ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000742 111 ACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLI 190 (1313)
Q Consensus 111 a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~ 190 (1313)
++.++++.+..+ .++.+++.|-+..+.+-..-... .-..+...+|.++..++.|++++++|+
T Consensus 85 a~lnlar~~e~l--------~~f~kt~~y~k~~l~lpgt~~~~----------~~gq~~l~~~~Ahlgls~fq~~Lesfe 146 (518)
T KOG1941|consen 85 AYLNLARSNEKL--------CEFHKTISYCKTCLGLPGTRAGQ----------LGGQVSLSMGNAHLGLSVFQKALESFE 146 (518)
T ss_pred HHHHHHHHHHHH--------HHhhhHHHHHHHHhcCCCCCccc----------ccchhhhhHHHHhhhHHHHHHHHHHHH
Confidence 999999999988 88888888887776651111000 123567779999999999999999999
Q ss_pred HHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc--h--hhhHHHHHHHHHHHHHHhcCHH
Q 000742 191 RGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIE--H--CQGEAKGYINLGELHYRVQKYD 266 (1313)
Q Consensus 191 ~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~--~--~~~~~~~~~~la~~~~~~g~~~ 266 (1313)
+|++++.+. ++......++..+|..|....++++|.-+..+|.++....+ + ......+++.++..+..+|..-
T Consensus 147 ~A~~~A~~~---~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~Lg 223 (518)
T KOG1941|consen 147 KALRYAHNN---DDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLG 223 (518)
T ss_pred HHHHHhhcc---CCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccc
Confidence 999998885 66666788999999999999999999999999999988764 2 2345667899999999999999
Q ss_pred HHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHH
Q 000742 267 EAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRL 346 (1313)
Q Consensus 267 ~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L 346 (1313)
.|.++.++|.++.-..++.... +..+--+
T Consensus 224 dA~e~C~Ea~klal~~Gdra~~---------------------------------------------------arc~~~~ 252 (518)
T KOG1941|consen 224 DAMECCEEAMKLALQHGDRALQ---------------------------------------------------ARCLLCF 252 (518)
T ss_pred cHHHHHHHHHHHHHHhCChHHH---------------------------------------------------HHHHHHH
Confidence 9999999999998777664221 1224445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHH-----HHHHHHHHHHHHHHhCCchhHHH
Q 000742 347 IEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNK-----AIKWYTKSWEMYKSIGNLEGQAL 421 (1313)
Q Consensus 347 ~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~-----A~~~~~kal~l~~~~~~~~~~~~ 421 (1313)
+++|+..++.+.|..-|++|......++++.....++...|.+.....-..+ |+++-++.+++..+++.....-.
T Consensus 253 aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK 332 (518)
T KOG1941|consen 253 ADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLK 332 (518)
T ss_pred HHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHH
Confidence 5556666666666666777777777777777777777777777766665555 88888888888888887777777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742 422 AKVNMGNVLDSNGDWAGALDAFQEGYRIAV 451 (1313)
Q Consensus 422 ~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~ 451 (1313)
.+..++.+|...|.-++--..+..|-+..+
T Consensus 333 ~hcrla~iYrs~gl~d~~~~h~~ra~~~~~ 362 (518)
T KOG1941|consen 333 LHCRLASIYRSKGLQDELRAHVVRAHECVE 362 (518)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence 788888888888777766666666555443
No 45
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.72 E-value=5.4e-19 Score=207.39 Aligned_cols=417 Identities=18% Similarity=0.140 Sum_probs=208.4
Q ss_pred hccCchhhhhhhhcCCccccchhhh-hhhcCcceeeEeecccccch--hHHHHHHHHHhcCCCchHHHHHHHhhccCCCe
Q 000742 758 ISKGLLPIIQHMKYGGRSLESFDAF-KDQLGKDIIEVSIDGWVQKR--LMKLYIECCKELSEAPNMKLLKKLYISEVEDE 834 (1313)
Q Consensus 758 ~~~gl~p~l~~l~~~g~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~--l~~l~l~~c~~l~~~~~~~~l~~l~~~~~~~~ 834 (1313)
-+|+..-.|+.+...+..+..+..- ...-..+.+.++...|.+-| +..+....-...+.+ ..+..+.+.. .+.
T Consensus 85 ~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N---~~~~~lg~~~-ik~ 160 (1081)
T KOG0618|consen 85 SSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNN---EKIQRLGQTS-IKK 160 (1081)
T ss_pred hhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcc---hhhhhhcccc-chh
Confidence 3566667777887777777766622 11113234455555554322 333333222222222 1122222222 356
Q ss_pred EEecCCCCCcCCHHHHHHHhhcCCCcC-EEEecCCCCCHHHHHHHHHHHHhcc----------cCccceEEEccCCCCCH
Q 000742 835 VIVSECELQDISVTPLLNALHTHKTVA-LLDLSHNLLGNGTMEKLQQFFISSC----------QNYVDLTLDLHCNRFGP 903 (1313)
Q Consensus 835 l~l~~~~l~~~~~~~l~~~L~~~~~L~-~L~Ls~n~l~~~~~~~L~~~l~~~~----------~~~~l~~L~Ls~n~l~~ 903 (1313)
+++..+.+...-+..+ ..++ .|||+.|.++...+..+..+-.-.| ..++++.|..++|.++.
T Consensus 161 ~~l~~n~l~~~~~~~i-------~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~ 233 (1081)
T KOG0618|consen 161 LDLRLNVLGGSFLIDI-------YNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTT 233 (1081)
T ss_pred hhhhhhhcccchhcch-------hhhheeeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCccee
Confidence 7777776655433222 2233 4888888876433333222100011 12233344444444431
Q ss_pred HHHHHHHhcccCCCCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCC
Q 000742 904 TTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYN 983 (1313)
Q Consensus 904 ~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n 983 (1313)
... .....+|+++++|+|.++. +++++..|.+|+.|++.+|.|+ .++..+....+|+.|++.+|
T Consensus 234 ~~~------~p~p~nl~~~dis~n~l~~-----lp~wi~~~~nle~l~~n~N~l~-----~lp~ri~~~~~L~~l~~~~n 297 (1081)
T KOG0618|consen 234 LDV------HPVPLNLQYLDISHNNLSN-----LPEWIGACANLEALNANHNRLV-----ALPLRISRITSLVSLSAAYN 297 (1081)
T ss_pred ecc------ccccccceeeecchhhhhc-----chHHHHhcccceEecccchhHH-----hhHHHHhhhhhHHHHHhhhh
Confidence 111 0112456666666665554 4455556666666666666553 34444445555666655555
Q ss_pred CCCChhhHHHHHHhhccCCccceeecCCCCCChHHHHHHHHHhhcCCccEEEccCCCCCCchHHHHHHHHhcCCCcccEE
Q 000742 984 SPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKL 1063 (1313)
Q Consensus 984 ~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 1063 (1313)
. +..++..+...++|++|+|..|+|.......+..+ +.+|..|+.+.|.+.... ...+ ...+.|+.|
T Consensus 298 e------l~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~--~~~l~~ln~s~n~l~~lp--~~~e---~~~~~Lq~L 364 (1081)
T KOG0618|consen 298 E------LEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVL--NASLNTLNVSSNKLSTLP--SYEE---NNHAALQEL 364 (1081)
T ss_pred h------hhhCCCcccccceeeeeeehhccccccchHHHhhh--hHHHHHHhhhhccccccc--cccc---hhhHHHHHH
Confidence 5 23334444455566666666666544322111110 112444444444443211 0000 112345555
Q ss_pred EccCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhcCCCCceeEEEeecCCCCHHHHHHHHHHhhcCC
Q 000742 1064 DLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSEND 1143 (1313)
Q Consensus 1064 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~ 1143 (1313)
.+.+|.+++..+. .+.+.++|+.|+|++|.++......+.++- .|+.|+||||.++ .|+..+..++
T Consensus 365 ylanN~Ltd~c~p----~l~~~~hLKVLhLsyNrL~~fpas~~~kle-----~LeeL~LSGNkL~-----~Lp~tva~~~ 430 (1081)
T KOG0618|consen 365 YLANNHLTDSCFP----VLVNFKHLKVLHLSYNRLNSFPASKLRKLE-----ELEELNLSGNKLT-----TLPDTVANLG 430 (1081)
T ss_pred HHhcCcccccchh----hhccccceeeeeecccccccCCHHHHhchH-----HhHHHhcccchhh-----hhhHHHHhhh
Confidence 5555555555322 233455555555555555433233332221 1555555555555 2445555555
Q ss_pred CccEEEccCCCCChhhhhhhcccccccCCcccccccccccccccccccccccccCCCCcccccccCCccchhhhccccCC
Q 000742 1144 TLEELNLADNASKELTLQQNLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIRVESAASGFD 1223 (1313)
Q Consensus 1144 ~L~~L~Ls~N~i~~~~~~~~l~~l~~~~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 1223 (1313)
.|++|...+|.|. +.| .+..++.|+++|+|.|+++...- .
T Consensus 431 ~L~tL~ahsN~l~----------------------~fP--------------e~~~l~qL~~lDlS~N~L~~~~l----~ 470 (1081)
T KOG0618|consen 431 RLHTLRAHSNQLL----------------------SFP--------------ELAQLPQLKVLDLSCNNLSEVTL----P 470 (1081)
T ss_pred hhHHHhhcCCcee----------------------ech--------------hhhhcCcceEEecccchhhhhhh----h
Confidence 5555555555544 333 25678899999999999977632 2
Q ss_pred CCcc-cccccCCccchhhHHHHHHHHhccccCceecCCCCCCCHHH
Q 000742 1224 NSCT-SSCQKNSSFECQFVQELSSAIGMAKPLQLLDLSNNGFSTQA 1268 (1313)
Q Consensus 1224 ~~~~-~~L~~L~Ls~n~l~~~l~~~l~~~~~L~~LdLs~N~l~~~~ 1268 (1313)
.... .+|++|||++|.=...-...|..++.+...+++-|+.++..
T Consensus 471 ~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~~~~d~~ 516 (1081)
T KOG0618|consen 471 EALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLNNTPDGN 516 (1081)
T ss_pred hhCCCcccceeeccCCcccccchhhhHHhhhhhheecccCCCCccc
Confidence 2233 69999999999844333456677788888888877554433
No 46
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=99.72 E-value=8.5e-18 Score=197.05 Aligned_cols=377 Identities=22% Similarity=0.230 Sum_probs=314.8
Q ss_pred CeEEecCCCCCcCCHHHHHHHhhcCCCcCEEEecCCCCCHHHHHHHHHHHHhcccCccceEEEccCCCCCHHHHHHHHhc
Q 000742 833 DEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICEC 912 (1313)
Q Consensus 833 ~~l~l~~~~l~~~~~~~l~~~L~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~~~~l~~L~Ls~n~l~~~~~~~l~~~ 912 (1313)
..+.|.+|.+.+.++..++.++..+++|..|+|++|.+++.+...+...+... ...+++|++..|.++..+...+...
T Consensus 90 ~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~--~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 90 LHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLP--QCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred HHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccc--hHHHHHHHhhcccccccchHHHHHH
Confidence 45889999999999999999999999999999999999999999999876643 2346779999999999999999999
Q ss_pred ccCCCCcCEEEecCCCCChhHHHHHHHHHhc----CCCCcEEEeecCCCCHHHHHHHHHHHhcCCC-ccEEEeCCCCCCC
Q 000742 913 PVLFTRLGVLNLSGNRLTDACGSYLSTILKN----CKVLYSLNIENCSITSRTIQKVADALGAEST-LAQLCIGYNSPVT 987 (1313)
Q Consensus 913 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~----~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~-L~~L~Ls~n~l~~ 987 (1313)
+..+..|+.||++.|.+...|...++..+.. ..++++|+|++|.++...+..+..++...++ +..|+++.|. +.
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~-l~ 246 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK-LG 246 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC-cc
Confidence 8889999999999999999999999999985 5589999999999999999999999999888 8889999999 77
Q ss_pred hhhHHHHHHhhccC-CccceeecCCCCCChHHHHHHHHHh-hcCCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEc
Q 000742 988 GNAITNLLVKLDTL-KSFSELNLNGLKLSKPVVDRLCQLA-KTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDL 1065 (1313)
Q Consensus 988 ~~~~~~~~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l~~l~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L 1065 (1313)
+.++..+...+..+ ..++.++++.|.+++.++..+.... ..+.++.|.|+.|.+++.+...+...+... ..+.++.+
T Consensus 247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~-~~~~~~~l 325 (478)
T KOG4308|consen 247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERK-TPLLHLVL 325 (478)
T ss_pred hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhc-ccchhhhc
Confidence 77888888888888 8999999999999999999998744 466899999999999999999999888765 46777777
Q ss_pred cCCCC-ChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhcCCCCceeEEEeecCCCCHHHHHHHHHHhhcCCC
Q 000742 1066 SYCGL-ESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDT 1144 (1313)
Q Consensus 1066 s~n~l-~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~ 1144 (1313)
.+++. +..+...++........+....++++...+.+...+.....++...+..|++..+.+.+.+...++..+..+..
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~ 405 (478)
T KOG4308|consen 326 GGTGKGTRGGTSVLAEADAQRQLLSELGISGNRVGEEGLALLVLAKSNPKSELLRLSLNSQVIEGRGALRLAAQLASNEK 405 (478)
T ss_pred cccCccchhHHHHHHHHHHHhhhhHHHHhhhccchHHHHHHHhhhhcccCcccchhhhhccccccHHHHHhhhhhhhcch
Confidence 76654 44444445555556666777888888899999989888888877779999999999999999999999999999
Q ss_pred ccEEEccCCCCChhhhhhhcccccccCCcccccccccccccccccccccccccCCCCcccccccCCccchhhhccccCCC
Q 000742 1145 LEELNLADNASKELTLQQNLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIRVESAASGFDN 1224 (1313)
Q Consensus 1145 L~~L~Ls~N~i~~~~~~~~l~~l~~~~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 1224 (1313)
+..++++.|...+.+.....+. .-.+. .++.++++.|.++...
T Consensus 406 l~~~~l~~n~~~~~~~~~l~~~-----------------------------~~~~~-~~~~~~l~~~~~~~~~------- 448 (478)
T KOG4308|consen 406 LEILDLSLNSLHDEGAEVLTEQ-----------------------------LSRNG-SLKALRLSRNPITALG------- 448 (478)
T ss_pred hhhhhhhcCccchhhHHHHHHh-----------------------------hhhcc-cchhhhhccChhhhcc-------
Confidence 9999999999888865544111 12344 6777888888875441
Q ss_pred CcccccccCCccchhhHHHHHHHHhccccCceecCCCCCCCH
Q 000742 1225 SCTSSCQKNSSFECQFVQELSSAIGMAKPLQLLDLSNNGFST 1266 (1313)
Q Consensus 1225 ~~~~~L~~L~Ls~n~l~~~l~~~l~~~~~L~~LdLs~N~l~~ 1266 (1313)
++.........+..+..-+.+|.++-
T Consensus 449 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (478)
T KOG4308|consen 449 ----------------TEELQRALALNPGILAIRLRGNVIGR 474 (478)
T ss_pred ----------------hHHHHHHHhcCCCcceeecccCcccc
Confidence 34555666666777777777776654
No 47
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.70 E-value=2.6e-15 Score=191.21 Aligned_cols=330 Identities=11% Similarity=-0.036 Sum_probs=193.5
Q ss_pred hhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccC--
Q 000742 6 MQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEH-- 83 (1313)
Q Consensus 6 ~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~-- 83 (1313)
+.+.+|.+......+..|...++ +..++......|++++|...|++++.... +..........++.+|...+.
T Consensus 356 ~~~~~~~~~~~~~y~~~~~~~~~--l~q~~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~l~~~l~~~~~~~~~~~ 430 (987)
T PRK09782 356 RNKAEALRLARLLYQQEPANLTR--LDQLTWQLMQNGQSREAADLLLQRYPFQG---DARLSQTLMARLASLLESHPYLA 430 (987)
T ss_pred CchhHHHHHHHHHHhcCCCCHHH--HHHHHHHHHHcccHHHHHHHHHHhcCCCc---ccccCHHHHHHHHHHHHhCCccc
Confidence 44556666666665665666666 88999999999999999999999987521 111112334477777777655
Q ss_pred -hHHH----------------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHH
Q 000742 84 -FKDA----------------------LIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYF 140 (1313)
Q Consensus 84 -~~~A----------------------~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~ 140 (1313)
..+| ...+ ..+....+..+.. ....+++++|.++.. +++++|+..|
T Consensus 431 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~al~~~p~~-~~~~a~~~LG~~l~~---------~~~~eAi~a~ 499 (987)
T PRK09782 431 TPAKVAILSKPLPLAEQRQWQSQLPGIADNC-PAIVRLLGDMSPS-YDAAAWNRLAKCYRD---------TLPGVALYAW 499 (987)
T ss_pred chHHHHHhccccccchhHHHHhhhhhhhhhH-HHHHHhcccCCCC-CCHHHHHHHHHHHHh---------CCcHHHHHHH
Confidence 2222 2222 2222222221110 023455666666542 4555566666
Q ss_pred HHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHH
Q 000742 141 KSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYM 220 (1313)
Q Consensus 141 ~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~ 220 (1313)
.+++... |. ......+|.++...|++++|+..|++++...+. ...+..+|.++.
T Consensus 500 ~~Al~~~---------------Pd-~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~----------~~a~~~la~all 553 (987)
T PRK09782 500 LQAEQRQ---------------PD-AWQHRAVAYQAYQVEDYATALAAWQKISLHDMS----------NEDLLAAANTAQ 553 (987)
T ss_pred HHHHHhC---------------Cc-hHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC----------cHHHHHHHHHHH
Confidence 6665442 11 112444455555666666666666665433110 122455566666
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHH
Q 000742 221 ELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVK 300 (1313)
Q Consensus 221 ~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~ 300 (1313)
..|++++|+.+|+++++..+ .....+..++......|++++|+..|++++++.|. ...
T Consensus 554 ~~Gd~~eA~~~l~qAL~l~P------~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a--------------- 611 (987)
T PRK09782 554 AAGNGAARDRWLQQAEQRGL------GDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANA--------------- 611 (987)
T ss_pred HCCCHHHHHHHHHHHHhcCC------ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHH---------------
Confidence 66666666666666665432 22333334444444556666666666666666552 211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhH
Q 000742 301 KAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLS 380 (1313)
Q Consensus 301 ~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a 380 (1313)
+..++..+...+++++|+..+++++.+ .|..+
T Consensus 612 ------------------------------------------~~~LA~~l~~lG~~deA~~~l~~AL~l------~Pd~~ 643 (987)
T PRK09782 612 ------------------------------------------YVARATIYRQRHNVPAAVSDLRAALEL------EPNNS 643 (987)
T ss_pred ------------------------------------------HHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCH
Confidence 233344445556666666666666554 35556
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 000742 381 DSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEA 453 (1313)
Q Consensus 381 ~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~ 453 (1313)
.++.++|.++...|++++|+..|++++++.| ..+.+++++|.+|..+|++++|+.+|++|+++..+.
T Consensus 644 ~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P------~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 644 NYQAALGYALWDSGDIAQSREMLERAHKGLP------DDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 7778888888888888888888888877643 556677888888888888888888888887777653
No 48
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.70 E-value=4.9e-14 Score=148.25 Aligned_cols=337 Identities=16% Similarity=0.137 Sum_probs=274.3
Q ss_pred hhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHH
Q 000742 68 LPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLA 147 (1313)
Q Consensus 68 ~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~ 147 (1313)
+.-...-|.-++...++++|+..+ .+.+....+.. .....+-.+..+...+ |.|++++.+--..+..+
T Consensus 6 ~k~q~~~g~~Ly~s~~~~~al~~w-~~~L~~l~~~~---~Rf~~lG~l~~a~s~~--------g~y~~mL~~a~sqi~~a 73 (518)
T KOG1941|consen 6 TKKQIEKGLQLYQSNQTEKALQVW-TKVLEKLSDLM---GRFRVLGCLVTAHSEM--------GRYKEMLKFAVSQIDTA 73 (518)
T ss_pred hHHHHHHHHhHhcCchHHHHHHHH-HHHHHHHHHHH---HHHHHhccchhhhhhh--------HHHHHHHHHHHHHHHHH
Confidence 344556677778889999999988 88887654443 3335566667777766 99999998888888887
Q ss_pred HHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHH
Q 000742 148 QTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDK 227 (1313)
Q Consensus 148 ~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~ 227 (1313)
.+..+.. ...+++.+++..+....++.+++.|-...+.+-.. .....-..+...+|.++..++.+++
T Consensus 74 ~~~~ds~---------~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt----~~~~~~gq~~l~~~~Ahlgls~fq~ 140 (518)
T KOG1941|consen 74 RELEDSD---------FLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGT----RAGQLGGQVSLSMGNAHLGLSVFQK 140 (518)
T ss_pred HHHHHHH---------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCC----CcccccchhhhhHHHHhhhHHHHHH
Confidence 7776543 66789999999999999999999998888776221 1112223567779999999999999
Q ss_pred HHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHH
Q 000742 228 SREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMD 307 (1313)
Q Consensus 228 A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~ 307 (1313)
++++|++|+.++..++|......++..+|.+|...+++++|.-+..+|.++.....-..... .|.++.
T Consensus 141 ~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~---------kyr~~~--- 208 (518)
T KOG1941|consen 141 ALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL---------KYRAMS--- 208 (518)
T ss_pred HHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH---------HHHHHH---
Confidence 99999999999999999989999999999999999999999999999999988765221110 111111
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHH
Q 000742 308 ELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIG 387 (1313)
Q Consensus 308 ~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg 387 (1313)
+-.++-.++..|..-.|.++.+++.+++-+.++.+..+.....+|
T Consensus 209 -----------------------------------lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~a 253 (518)
T KOG1941|consen 209 -----------------------------------LYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFA 253 (518)
T ss_pred -----------------------------------HHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 223334455667778888999999999999999999999999999
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHH-----HHHHHHHHHHHHHHcCChhHHHHH
Q 000742 388 ESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAG-----ALDAFQEGYRIAVEANLPSVQLSA 462 (1313)
Q Consensus 388 ~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~-----A~~~~~kAl~i~~~~~~~~~~~~a 462 (1313)
.+|...|+.+.|..-|++|......+++.-.+..++...|.++....-..+ |+++-+++++++.+++.+....+.
T Consensus 254 DIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~ 333 (518)
T KOG1941|consen 254 DIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKL 333 (518)
T ss_pred HHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHH
Confidence 999999999999999999999999999999999999999999987765555 999999999999999999999999
Q ss_pred HHhhHHHHHHhhcC
Q 000742 463 LENMHYSHMIRFDN 476 (1313)
Q Consensus 463 l~~L~~~~~~~~~~ 476 (1313)
...++.+|...+.+
T Consensus 334 hcrla~iYrs~gl~ 347 (518)
T KOG1941|consen 334 HCRLASIYRSKGLQ 347 (518)
T ss_pred HHHHHHHHHhccch
Confidence 99999999765444
No 49
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.69 E-value=3.4e-14 Score=167.10 Aligned_cols=351 Identities=14% Similarity=0.111 Sum_probs=252.2
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHH
Q 000742 27 EARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLV 106 (1313)
Q Consensus 27 ~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~ 106 (1313)
++..+...|+..+..|++++|.+.+..++...+.. ..+|+.+|.+|..+|+.++|.... -.|-.+.|+..
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~------~~ay~tL~~IyEqrGd~eK~l~~~-llAAHL~p~d~--- 207 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRN------PIAYYTLGEIYEQRGDIEKALNFW-LLAAHLNPKDY--- 207 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccc------hhhHHHHHHHHHHcccHHHHHHHH-HHHHhcCCCCh---
Confidence 45567788899999999999999999999988543 889999999999999999999998 88877777654
Q ss_pred HHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHH
Q 000742 107 EQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAK 186 (1313)
Q Consensus 107 ~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~ 186 (1313)
.-|..++.....+ |.+++|.-+|.+|++. .|.....+...+.+|.+.|++..|+
T Consensus 208 ---e~W~~ladls~~~--------~~i~qA~~cy~rAI~~---------------~p~n~~~~~ers~L~~~~G~~~~Am 261 (895)
T KOG2076|consen 208 ---ELWKRLADLSEQL--------GNINQARYCYSRAIQA---------------NPSNWELIYERSSLYQKTGDLKRAM 261 (895)
T ss_pred ---HHHHHHHHHHHhc--------ccHHHHHHHHHHHHhc---------------CCcchHHHHHHHHHHHHhChHHHHH
Confidence 2477888888777 9999999999999988 3455678889999999999999999
Q ss_pred HHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHH
Q 000742 187 KFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYD 266 (1313)
Q Consensus 187 ~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 266 (1313)
.-|.+++...+. .+-...-..-...+..|...++-+.|++.++.++..... ......+..++.+|....+++
T Consensus 262 ~~f~~l~~~~p~----~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~----~~~~ed~ni~ael~l~~~q~d 333 (895)
T KOG2076|consen 262 ETFLQLLQLDPP----VDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKD----EASLEDLNILAELFLKNKQSD 333 (895)
T ss_pred HHHHHHHhhCCc----hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccc----cccccHHHHHHHHHHHhHHHH
Confidence 999999999763 122223334455688888899889999999999883321 233345668889999999999
Q ss_pred HHHHHHHHHHHHHHH----------------------ccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742 267 EAILCYQKALNLAQS----------------------MEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMI 324 (1313)
Q Consensus 267 ~A~~~~~kal~~~~~----------------------~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~ 324 (1313)
.|...........-+ ..+....+..++..++-+..-... ....+...+.
T Consensus 334 ~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e---------~~e~ll~~l~ 404 (895)
T KOG2076|consen 334 KALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERE---------LLEALLHFLV 404 (895)
T ss_pred HhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccc---------hHHHHHHHHH
Confidence 999888776651100 000000001011111111100000 0001111111
Q ss_pred HhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHH
Q 000742 325 IAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYT 404 (1313)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~ 404 (1313)
...-.+.+ ....+-+++..+...+.|..|+.++-....- .....+.+|+.+|.+|..+|.+++|+++|+
T Consensus 405 ~~n~~~~d------~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~-----~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~ 473 (895)
T KOG2076|consen 405 EDNVWVSD------DVDLYLDLADALTNIGKYKEALRLLSPITNR-----EGYQNAFVWYKLARCYMELGEYEEAIEFYE 473 (895)
T ss_pred HhcCChhh------hHHHHHHHHHHHHhcccHHHHHHHHHHHhcC-----ccccchhhhHHHHHHHHHHhhHHHHHHHHH
Confidence 11111111 2233566777888888888888887766432 222336899999999999999999999999
Q ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000742 405 KSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGY 447 (1313)
Q Consensus 405 kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl 447 (1313)
+++...| ....+...|+.+|..+|+.++|++.++...
T Consensus 474 kvl~~~p------~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 474 KVLILAP------DNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHhcCC------CchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9998765 556778999999999999999998887744
No 50
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=99.69 E-value=2.9e-17 Score=192.56 Aligned_cols=404 Identities=22% Similarity=0.211 Sum_probs=291.2
Q ss_pred CCHHHHHHHhhcCCCcCEEEecCCCCCHHHH---HHHHHHHHhcccCc--cceEEEccCCCCCHHHHHHHHhcccCCCCc
Q 000742 845 ISVTPLLNALHTHKTVALLDLSHNLLGNGTM---EKLQQFFISSCQNY--VDLTLDLHCNRFGPTTLFQICECPVLFTRL 919 (1313)
Q Consensus 845 ~~~~~l~~~L~~~~~L~~L~Ls~n~l~~~~~---~~L~~~l~~~~~~~--~l~~L~Ls~n~l~~~~~~~l~~~l~~~~~L 919 (1313)
..+..+...+...+.+..+.++.+.+.+.+. .....++. ..... .+..|.|.+|.+++.+...++..+..+++|
T Consensus 39 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L 117 (478)
T KOG4308|consen 39 DTCRDLRSLLRRNTTLTELVLQSCSLSGRGRCFVLELLELLR-EPLNKLASLLHLSLANNRLGDRGAEELAQALKTLPTL 117 (478)
T ss_pred cchHHHHHhhhhccchhhhhhhhhhccccccchHHHHHHhhc-cccchhhhHHHhhhhhCccccchHHHHHHHhcccccH
Confidence 3344555555566677777777777766552 22222111 11111 167888999999999999999999999999
Q ss_pred CEEEecCCCCChhHHHHHHHHHhcC-CCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCCCCCChhhHHHHHHhh
Q 000742 920 GVLNLSGNRLTDACGSYLSTILKNC-KVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLVKL 998 (1313)
Q Consensus 920 ~~L~Ls~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l 998 (1313)
+.|+|++|.+++.|+..+...+... ..|++|.+..|.++..++..++..+..+..|+.|+++.|. +...+...+...+
T Consensus 118 ~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~-l~~~g~~~l~~~l 196 (478)
T KOG4308|consen 118 GQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNG-LIELGLLVLSQAL 196 (478)
T ss_pred hHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcc-cchhhhHHHhhhh
Confidence 9999999999999999999999876 6799999999999999999999999999999999999998 4455555566666
Q ss_pred c----cCCccceeecCCCCCChHHHHHHHHHhh-cCC-ccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCCCh
Q 000742 999 D----TLKSFSELNLNGLKLSKPVVDRLCQLAK-TSC-LTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLES 1072 (1313)
Q Consensus 999 ~----~~~~L~~L~Ls~n~l~~~~~~~l~~l~~-~~~-L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 1072 (1313)
. ...++++|.|++|.++...+..+..... .++ +..|++..|.++|.|+..+.+.+....+.+++++++.|.|++
T Consensus 197 ~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~ 276 (478)
T KOG4308|consen 197 ESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITE 276 (478)
T ss_pred hhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccc
Confidence 5 4779999999999999888887766433 344 777999999999999999999887665789999999999999
Q ss_pred hHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhcCCCCceeEEEeecCC-CCHHHHHHHHHHhhcCCCccEEEcc
Q 000742 1073 TCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQ-LGLAGVLQLIKALSENDTLEELNLA 1151 (1313)
Q Consensus 1073 ~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-i~~~g~~~l~~~l~~~~~L~~L~Ls 1151 (1313)
.++..+++.+..++.++.|.|+.|++++.+...+...+... +.+..+.+.++. .+..+...++.+......+..+..+
T Consensus 277 ~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (478)
T KOG4308|consen 277 KGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERK-TPLLHLVLGGTGKGTRGGTSVLAEADAQRQLLSELGIS 355 (478)
T ss_pred cchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhc-ccchhhhccccCccchhHHHHHHHHHHHhhhhHHHHhh
Confidence 99999999999999999999999999999999988888753 356777777555 4444445556666666667777788
Q ss_pred CCCCChhhhhhhcccccccCCcccccccccccccccccccccccccCCCC-cccccccCCccchhhhccc-cCCCCcccc
Q 000742 1152 DNASKELTLQQNLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCN-DLEVADSEDDKIRVESAAS-GFDNSCTSS 1229 (1313)
Q Consensus 1152 ~N~i~~~~~~~~l~~l~~~~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~-~~~~~~~~~ 1229 (1313)
+|...+.+.... .. ...+-+ .+..+++..+.+.+..... .........
T Consensus 356 ~~~~~~~~~~~~-~~-----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~ 405 (478)
T KOG4308|consen 356 GNRVGEEGLALL-VL-----------------------------AKSNPKSELLRLSLNSQVIEGRGALRLAAQLASNEK 405 (478)
T ss_pred hccchHHHHHHH-hh-----------------------------hhcccCcccchhhhhccccccHHHHHhhhhhhhcch
Confidence 888887755443 00 001111 1333333333332221100 001111135
Q ss_pred cccCCccchhhHH----HHHHHHhccccCceecCCCCCCCHHHHHHHHHHHhcCCC
Q 000742 1230 CQKNSSFECQFVQ----ELSSAIGMAKPLQLLDLSNNGFSTQAVKTLYCAWSSRSG 1281 (1313)
Q Consensus 1230 L~~L~Ls~n~l~~----~l~~~l~~~~~L~~LdLs~N~l~~~~~~~l~~~l~~~~~ 1281 (1313)
++.++++.|.... .+......+-.+..++++.|.++..+...+......++.
T Consensus 406 l~~~~l~~n~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 461 (478)
T KOG4308|consen 406 LEILDLSLNSLHDEGAEVLTEQLSRNGSLKALRLSRNPITALGTEELQRALALNPG 461 (478)
T ss_pred hhhhhhhcCccchhhHHHHHHhhhhcccchhhhhccChhhhcchHHHHHHHhcCCC
Confidence 5556666555442 233333333488888999999988888888888877664
No 51
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.67 E-value=3.8e-15 Score=189.74 Aligned_cols=221 Identities=10% Similarity=-0.046 Sum_probs=153.9
Q ss_pred hhHHHHHHHHHHHH---HhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHcc
Q 000742 6 MQMSEAKRAYRSAK---EEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLE 82 (1313)
Q Consensus 6 ~~~~~A~~~l~~a~---~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g 82 (1313)
+++.++...+..+. ...|....+.+++.+|.++.. +++++|+..|.+++...+. ......+|.++...|
T Consensus 452 ~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd-------~~~~L~lA~al~~~G 523 (987)
T PRK09782 452 SQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPD-------AWQHRAVAYQAYQVE 523 (987)
T ss_pred hhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCc-------hHHHHHHHHHHHHCC
Confidence 44444443444333 333431134448888888876 7888888888888766532 123555666777888
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhh
Q 000742 83 HFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFL 162 (1313)
Q Consensus 83 ~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~ 162 (1313)
++++|+.+| ++++...+.. ..+..+|.++... |++++|+.+|+++++..
T Consensus 524 r~eeAi~~~-rka~~~~p~~-------~a~~~la~all~~--------Gd~~eA~~~l~qAL~l~--------------- 572 (987)
T PRK09782 524 DYATALAAW-QKISLHDMSN-------EDLLAAANTAQAA--------GNGAARDRWLQQAEQRG--------------- 572 (987)
T ss_pred CHHHHHHHH-HHHhccCCCc-------HHHHHHHHHHHHC--------CCHHHHHHHHHHHHhcC---------------
Confidence 888888888 8765442221 2356777777766 88888888888887651
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000742 163 KEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKI 242 (1313)
Q Consensus 163 p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~ 242 (1313)
|.....+..++......|++++|+..|++++++. |. ..++.++|.++...|++++|+..|++++.+.|
T Consensus 573 P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~---------P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P-- 640 (987)
T PRK09782 573 LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA---------PS-ANAYVARATIYRQRHNVPAAVSDLRAALELEP-- 640 (987)
T ss_pred CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC---------CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--
Confidence 1223445556666666788888888888888772 22 56778888888888888888888888888866
Q ss_pred chhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 000742 243 EHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQS 281 (1313)
Q Consensus 243 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~ 281 (1313)
..+.++.++|.++...|++++|+..|++++++.|.
T Consensus 641 ----d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~ 675 (987)
T PRK09782 641 ----NNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD 675 (987)
T ss_pred ----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 66778888888888888888888888888887654
No 52
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.66 E-value=2.8e-18 Score=182.74 Aligned_cols=177 Identities=16% Similarity=0.060 Sum_probs=114.2
Q ss_pred CccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCCChhHHHHHHHHHhcCCCc-cEEEccCCCCChHHHHHHHH
Q 000742 1030 CLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGI-LELNLGGNPIMKEGANALAS 1108 (1313)
Q Consensus 1030 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L-~~L~Ls~N~i~~~~~~~l~~ 1108 (1313)
+.+.|++++-++++.... +.++... .-+...+++.|++... |..+..+..+ +.+++++|.++ ..+..++.
T Consensus 363 ~tkiL~~s~~qlt~VPdE-Vfea~~~--~~Vt~VnfskNqL~el-----Pk~L~~lkelvT~l~lsnn~is-fv~~~l~~ 433 (565)
T KOG0472|consen 363 TTKILDVSDKQLTLVPDE-VFEAAKS--EIVTSVNFSKNQLCEL-----PKRLVELKELVTDLVLSNNKIS-FVPLELSQ 433 (565)
T ss_pred hhhhhcccccccccCCHH-HHHHhhh--cceEEEecccchHhhh-----hhhhHHHHHHHHHHHhhcCccc-cchHHHHh
Confidence 466677777666654322 2233221 1367778888877543 3333333332 33566666665 33444554
Q ss_pred HhcCCCCceeEEEeecCCCCHHHHHHHHHHhhcCCCccEEEccCCCCChh-hhhhhcccccccCCccccccccccccccc
Q 000742 1109 LLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASKEL-TLQQNLSSVNSENLQPALKTSDCVSKEVD 1187 (1313)
Q Consensus 1109 ~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~N~i~~~-~~~~~l~~l~~~~l~~n~~~~~~~~~~~~ 1187 (1313)
+- +|..|+|++|-+. .+|..+.....|+.|+|+.|++... .+-+.+..+..+..+.|++.+++.
T Consensus 434 l~-----kLt~L~L~NN~Ln-----~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~----- 498 (565)
T KOG0472|consen 434 LQ-----KLTFLDLSNNLLN-----DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDP----- 498 (565)
T ss_pred hh-----cceeeecccchhh-----hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccCh-----
Confidence 42 3888888888876 3666677777788888888887765 222223445555666688877664
Q ss_pred ccccccccccCCCCcccccccCCccchhhhccccCCCCcccccccCCccchhhH
Q 000742 1188 TDQHGLFAMNTDCNDLEVADSEDDKIRVESAASGFDNSCTSSCQKNSSFECQFV 1241 (1313)
Q Consensus 1188 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 1241 (1313)
..+.++.+|..|||.+|.+..++|. ..+| ++|+.|.|++|.|.
T Consensus 499 -------~~l~nm~nL~tLDL~nNdlq~IPp~---Lgnm-tnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 499 -------SGLKNMRNLTTLDLQNNDLQQIPPI---LGNM-TNLRHLELDGNPFR 541 (565)
T ss_pred -------HHhhhhhhcceeccCCCchhhCChh---hccc-cceeEEEecCCccC
Confidence 4577888899999999999888764 4455 78999999999887
No 53
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.66 E-value=1.7e-16 Score=194.32 Aligned_cols=269 Identities=20% Similarity=0.141 Sum_probs=178.8
Q ss_pred cceEEEccCCCCCHHHHHHHHhcccCCCCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHH
Q 000742 890 VDLTLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADAL 969 (1313)
Q Consensus 890 ~l~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l 969 (1313)
+...|+|+.|+|+..+. .+. ++|+.|+|++|.|+. ++. .+++|++|+|++|+|+. ++.
T Consensus 202 ~~~~LdLs~~~LtsLP~-~l~------~~L~~L~L~~N~Lt~-----LP~---lp~~Lk~LdLs~N~Lts-----LP~-- 259 (788)
T PRK15387 202 GNAVLNVGESGLTTLPD-CLP------AHITTLVIPDNNLTS-----LPA---LPPELRTLEVSGNQLTS-----LPV-- 259 (788)
T ss_pred CCcEEEcCCCCCCcCCc-chh------cCCCEEEccCCcCCC-----CCC---CCCCCcEEEecCCccCc-----ccC--
Confidence 34678999998875433 222 478899999988885 332 24678889998888873 221
Q ss_pred hcCCCccEEEeCCCCCCChhhHHHHHHhhccCCccceeecCCCCCChHHHHHHHHHhhcCCccEEEccCCCCCCchHHHH
Q 000742 970 GAESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQL 1049 (1313)
Q Consensus 970 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~i~~~~~~~l 1049 (1313)
..++|++|+|++|.+ . .++. .+.+|+.|+|++|+++... . ..++|+.|+|++|.|....
T Consensus 260 -lp~sL~~L~Ls~N~L-~-----~Lp~---lp~~L~~L~Ls~N~Lt~LP-~------~p~~L~~LdLS~N~L~~Lp---- 318 (788)
T PRK15387 260 -LPPGLLELSIFSNPL-T-----HLPA---LPSGLCKLWIFGNQLTSLP-V------LPPGLQELSVSDNQLASLP---- 318 (788)
T ss_pred -cccccceeeccCCch-h-----hhhh---chhhcCEEECcCCcccccc-c------cccccceeECCCCccccCC----
Confidence 236788888888873 1 1222 2246778888888876531 1 1245888888888776421
Q ss_pred HHHHhcCCCcccEEEccCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhcCCCCceeEEEeecCCCCH
Q 000742 1050 VESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGL 1129 (1313)
Q Consensus 1050 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~ 1129 (1313)
. + ...|+.|++++|.|+.. +. ...+|+.|+|++|.|+... . . ..+|+.|++++|.|+.
T Consensus 319 -~-l---p~~L~~L~Ls~N~L~~L-----P~---lp~~Lq~LdLS~N~Ls~LP-~----l----p~~L~~L~Ls~N~L~~ 376 (788)
T PRK15387 319 -A-L---PSELCKLWAYNNQLTSL-----PT---LPSGLQELSVSDNQLASLP-T----L----PSELYKLWAYNNRLTS 376 (788)
T ss_pred -C-C---cccccccccccCccccc-----cc---cccccceEecCCCccCCCC-C----C----Ccccceehhhcccccc
Confidence 1 1 13577778888877643 11 1146778888888776421 1 1 1247777777777762
Q ss_pred HHHHHHHHHhhcCCCccEEEccCCCCChhhhhhhcccccccCCcccccccccccccccccccccccccCCCCcccccccC
Q 000742 1130 AGVLQLIKALSENDTLEELNLADNASKELTLQQNLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSE 1209 (1313)
Q Consensus 1130 ~g~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~~l~~l~~~~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls 1209 (1313)
++.. ..+|+.|+|++|.|+.. |. ..++|+.|+++
T Consensus 377 -----LP~l---~~~L~~LdLs~N~Lt~L----------------------P~----------------l~s~L~~LdLS 410 (788)
T PRK15387 377 -----LPAL---PSGLKELIVSGNRLTSL----------------------PV----------------LPSELKELMVS 410 (788)
T ss_pred -----Cccc---ccccceEEecCCcccCC----------------------CC----------------cccCCCEEEcc
Confidence 3321 23577777777776632 20 12468889999
Q ss_pred CccchhhhccccCCCCcccccccCCccchhhHHHHHHHHhccccCceecCCCCCCCHHHHHHHHHHHh
Q 000742 1210 DDKIRVESAASGFDNSCTSSCQKNSSFECQFVQELSSAIGMAKPLQLLDLSNNGFSTQAVKTLYCAWS 1277 (1313)
Q Consensus 1210 ~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~l~~~l~~~~~L~~LdLs~N~l~~~~~~~l~~~l~ 1277 (1313)
+|.|++++. ...+|+.|+|++|+|+ .+|..+..+++|+.|+|++|+|++..+..|.....
T Consensus 411 ~N~LssIP~-------l~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l~s 470 (788)
T PRK15387 411 GNRLTSLPM-------LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITS 470 (788)
T ss_pred CCcCCCCCc-------chhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHHhc
Confidence 999976532 2357889999999987 58999999999999999999999998888754433
No 54
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=2e-14 Score=160.65 Aligned_cols=276 Identities=18% Similarity=0.194 Sum_probs=185.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHH
Q 000742 29 RWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQ 108 (1313)
Q Consensus 29 ~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~ 108 (1313)
......++.++..++|.+-.+.....++..+- +..-.-..+| ++..+|+..+=...- .+.++..|...
T Consensus 245 dll~~~ad~~y~~c~f~~c~kit~~lle~dpf-----h~~~~~~~ia-~l~el~~~n~Lf~ls-h~LV~~yP~~a----- 312 (611)
T KOG1173|consen 245 DLLAEKADRLYYGCRFKECLKITEELLEKDPF-----HLPCLPLHIA-CLYELGKSNKLFLLS-HKLVDLYPSKA----- 312 (611)
T ss_pred HHHHHHHHHHHHcChHHHHHHHhHHHHhhCCC-----CcchHHHHHH-HHHHhcccchHHHHH-HHHHHhCCCCC-----
Confidence 34556666777777777777777766666532 2222333455 666666655544444 44444444332
Q ss_pred HHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 000742 109 QRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKF 188 (1313)
Q Consensus 109 a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~ 188 (1313)
..|+.+|..|... +++.+|..||.||..+ .|.++.+|...|..|...|+.++|+..
T Consensus 313 -~sW~aVg~YYl~i--------~k~seARry~SKat~l---------------D~~fgpaWl~fghsfa~e~EhdQAmaa 368 (611)
T KOG1173|consen 313 -LSWFAVGCYYLMI--------GKYSEARRYFSKATTL---------------DPTFGPAWLAFGHSFAGEGEHDQAMAA 368 (611)
T ss_pred -cchhhHHHHHHHh--------cCcHHHHHHHHHHhhc---------------CccccHHHHHHhHHhhhcchHHHHHHH
Confidence 4567777777766 7777777777777666 335566777777777777777777777
Q ss_pred HHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHH
Q 000742 189 LIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEA 268 (1313)
Q Consensus 189 ~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 268 (1313)
|..|-++.+.. ..-...+|.-|...++++.|.++|.+|+.++| ..+.++..+|.+.+..+.|.+|
T Consensus 369 Y~tAarl~~G~---------hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P------~Dplv~~Elgvvay~~~~y~~A 433 (611)
T KOG1173|consen 369 YFTAARLMPGC---------HLPSLYLGMEYMRTNNLKLAEKFFKQALAIAP------SDPLVLHELGVVAYTYEEYPEA 433 (611)
T ss_pred HHHHHHhccCC---------cchHHHHHHHHHHhccHHHHHHHHHHHHhcCC------CcchhhhhhhheeehHhhhHHH
Confidence 77777765542 11234567777777777777777777777766 6666777777777777777777
Q ss_pred HHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHH
Q 000742 269 ILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIE 348 (1313)
Q Consensus 269 ~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~ 348 (1313)
..+|++++...+....... .....+.+||.
T Consensus 434 ~~~f~~~l~~ik~~~~e~~--------------------------------------------------~w~p~~~NLGH 463 (611)
T KOG1173|consen 434 LKYFQKALEVIKSVLNEKI--------------------------------------------------FWEPTLNNLGH 463 (611)
T ss_pred HHHHHHHHHHhhhcccccc--------------------------------------------------chhHHHHhHHH
Confidence 7777777754444332211 01123677888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Q 000742 349 KSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYK 411 (1313)
Q Consensus 349 ~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~ 411 (1313)
.++..+.|+.|+.++++++.+. +..+.+|..+|-+|..+|++++|+++|.||+.+.+
T Consensus 464 ~~Rkl~~~~eAI~~~q~aL~l~------~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 464 AYRKLNKYEEAIDYYQKALLLS------PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKP 520 (611)
T ss_pred HHHHHhhHHHHHHHHHHHHHcC------CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence 8888899999999999998765 55669999999999999999999999999997765
No 55
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.1e-13 Score=154.52 Aligned_cols=373 Identities=16% Similarity=0.117 Sum_probs=244.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHH
Q 000742 31 ANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQR 110 (1313)
Q Consensus 31 ~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~ 110 (1313)
+...|+..+..|+|+.|+.+|..|+.+.+. ....|.+...+|..+|+|++|++.. .+..++.|..+ .
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~------nhvlySnrsaa~a~~~~~~~al~da-~k~~~l~p~w~------k 71 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPT------NHVLYSNRSAAYASLGSYEKALKDA-TKTRRLNPDWA------K 71 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHccCCC------ccchhcchHHHHHHHhhHHHHHHHH-HHHHhcCCchh------h
Confidence 446788999999999999999999998743 2567889999999999999999999 99999877654 6
Q ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcC----------
Q 000742 111 ACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELD---------- 180 (1313)
Q Consensus 111 a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g---------- 180 (1313)
.|...|..+..+ |+|++|+..|.+.++. .|.....+..++.++....
T Consensus 72 gy~r~Gaa~~~l--------g~~~eA~~ay~~GL~~---------------d~~n~~L~~gl~~a~~~~~~~~~~~~~p~ 128 (539)
T KOG0548|consen 72 GYSRKGAALFGL--------GDYEEAILAYSEGLEK---------------DPSNKQLKTGLAQAYLEDYAADQLFTKPY 128 (539)
T ss_pred HHHHhHHHHHhc--------ccHHHHHHHHHHHhhc---------------CCchHHHHHhHHHhhhHHHHhhhhccCcH
Confidence 799999999988 9999999999999987 3344555666666552110
Q ss_pred -----------CHHHHHHHHHHHHhHhhhhcc----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHH---------HHHH
Q 000742 181 -----------NLEEAKKFLIRGLEICNEEEV----SEDDDGRSRLHHNLGNVYMELRMWDKSREHI---------EQDI 236 (1313)
Q Consensus 181 -----------~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~---------~kal 236 (1313)
++-..-..|.+.++..++... .-..+ .....+|......-....+.... .+-.
T Consensus 129 ~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~---r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~ 205 (539)
T KOG0548|consen 129 FHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDP---RLMKADGQLKGVDELLFYASGIEILASMAEPCKQEH 205 (539)
T ss_pred HHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccH---HHHHHHHHHhcCccccccccccccCCCCCCcccccC
Confidence 011111223333333322100 00011 11111111100000000000000 0000
Q ss_pred HHHHHhch------hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHH
Q 000742 237 IICKKIEH------CQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELK 310 (1313)
Q Consensus 237 ~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~ 310 (1313)
.-.+...+ ....+...-.+|...++..++..|++.|.+++++. .........+.+|..+|.+.++.+..+++.
T Consensus 206 ~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~ 284 (539)
T KOG0548|consen 206 NGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAV 284 (539)
T ss_pred CCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHH
Confidence 00000011 12245678899999999999999999999999999 554555566668888888887777766654
Q ss_pred HHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
Q 000742 311 KEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASE------------------ 372 (1313)
Q Consensus 311 ~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~------------------ 372 (1313)
+.-.....- +-..+.++..+|..+...++|+.++.+|++++.-.+.
T Consensus 285 E~gre~rad----------------~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e 348 (539)
T KOG0548|consen 285 EVGRELRAD----------------YKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAE 348 (539)
T ss_pred HHhHHHHHH----------------HHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHH
Confidence 221111111 1113444566777888888888888888887754322
Q ss_pred --hCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000742 373 --LCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIA 450 (1313)
Q Consensus 373 --~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~ 450 (1313)
....|..+.-...-|..+++.|+|.+|+.+|.+|++.. |..+..|.+.|.+|.++|.+..|+...++++++.
T Consensus 349 ~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~------P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~ 422 (539)
T KOG0548|consen 349 RKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD------PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD 422 (539)
T ss_pred HHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC------CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 01122334555567999999999999999999999764 5788999999999999999999999999999983
Q ss_pred HHcCChhHHHHHHHhhHHHHH
Q 000742 451 VEANLPSVQLSALENMHYSHM 471 (1313)
Q Consensus 451 ~~~~~~~~~~~al~~L~~~~~ 471 (1313)
|. ...+|.+-|.++.
T Consensus 423 -----p~-~~kgy~RKg~al~ 437 (539)
T KOG0548|consen 423 -----PN-FIKAYLRKGAALR 437 (539)
T ss_pred -----ch-HHHHHHHHHHHHH
Confidence 22 4456666676663
No 56
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.64 E-value=1e-12 Score=164.23 Aligned_cols=423 Identities=10% Similarity=0.022 Sum_probs=250.0
Q ss_pred chhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccC
Q 000742 4 DEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEH 83 (1313)
Q Consensus 4 ~~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 83 (1313)
.+|+++.|+..|+++.+.+|....+ ...+..++...|++++|+.++++++ . +.+.....+..+|.+|..+|+
T Consensus 46 r~Gd~~~Al~~L~qaL~~~P~~~~a--v~dll~l~~~~G~~~~A~~~~eka~--~----p~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAGPLQSGQ--VDDWLQIAGWAGRDQEVIDVYERYQ--S----SMNISSRGLASAARAYRNEKR 117 (822)
T ss_pred hCCCHHHHHHHHHHHHhhCccchhh--HHHHHHHHHHcCCcHHHHHHHHHhc--c----CCCCCHHHHHHHHHHHHHcCC
Confidence 3566777777777777776665322 1256666666677777777777776 1 222223444445667777777
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhH
Q 000742 84 FKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLK 163 (1313)
Q Consensus 84 ~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p 163 (1313)
|++|++.| +++++..|+.. .++..++..|... ++.++|++.++++.....
T Consensus 118 yd~Aiely-~kaL~~dP~n~------~~l~gLa~~y~~~--------~q~~eAl~~l~~l~~~dp--------------- 167 (822)
T PRK14574 118 WDQALALW-QSSLKKDPTNP------DLISGMIMTQADA--------GRGGVVLKQATELAERDP--------------- 167 (822)
T ss_pred HHHHHHHH-HHHHhhCCCCH------HHHHHHHHHHhhc--------CCHHHHHHHHHHhcccCc---------------
Confidence 77777777 77777766553 2344556666655 677777777766655511
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000742 164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIE 243 (1313)
Q Consensus 164 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~ 243 (1313)
. ...+..++.++...+++.+|++.++++++..+ ....++..+..+....|-...|.+..++--..+....
T Consensus 168 ~-~~~~l~layL~~~~~~~~~AL~~~ekll~~~P---------~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~ 237 (822)
T PRK14574 168 T-VQNYMTLSYLNRATDRNYDALQASSEAVRLAP---------TSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEH 237 (822)
T ss_pred c-hHHHHHHHHHHHhcchHHHHHHHHHHHHHhCC---------CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHH
Confidence 1 11224445555556666667777777777633 2345556666666667766666655554322221100
Q ss_pred h---hhhHHHHHHHHHHHHH--HhcCH---HHHHHHHHHHHHHHHHccChhHHH-------HHHHHhHHHHHHHHHHHHH
Q 000742 244 H---CQGEAKGYINLGELHY--RVQKY---DEAILCYQKALNLAQSMEDEDALA-------SQIDQNIETVKKAIEVMDE 308 (1313)
Q Consensus 244 ~---~~~~~~~~~~la~~~~--~~g~~---~~A~~~~~kal~~~~~~~~~~~~~-------~~~~~~lg~~~~a~~~~~~ 308 (1313)
. ..+.+.-....+.... ...++ +.|+.-+++.+...+..+...... -.++..++.+.+++..|+.
T Consensus 238 ~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~ 317 (822)
T PRK14574 238 YRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEA 317 (822)
T ss_pred HHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 0 0011111111111111 11122 334444444444333333221111 1145566667777777766
Q ss_pred HHHHHH---H-HHHHHHHHHHhhCCchHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742 309 LKKEEQ---N-LKKLTRNMIIAKGTSQERKYLLQQNAS--------------LDRLIEKSSMIFAWLKHCEYAKRKKRIA 370 (1313)
Q Consensus 309 a~~~~~---~-~~~l~~~l~~~~~~~~~a~~~~~~~~~--------------l~~L~~~~~~~~~~~~A~~~~~~a~~i~ 370 (1313)
...... . ..............|+.+..++.+... ...|...+...++|++|..+.++...-.
T Consensus 318 l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~ 397 (822)
T PRK14574 318 MEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQT 397 (822)
T ss_pred hhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 653221 1 112222333456778888887776421 2567788899999999999999887632
Q ss_pred H-Hh--------CCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 000742 371 S-EL--------CDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALD 441 (1313)
Q Consensus 371 ~-~~--------~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~ 441 (1313)
. .. ...++...+...++.++...|++.+|.+.+++.+...| ........+|.++...|.+.+|..
T Consensus 398 p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP------~n~~l~~~~A~v~~~Rg~p~~A~~ 471 (822)
T PRK14574 398 PYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAP------ANQNLRIALASIYLARDLPRKAEQ 471 (822)
T ss_pred CcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHhcCCHHHHHH
Confidence 2 01 23345578888899999999999999999999987754 677788999999999999999999
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHhhHHHHHHhhcCHHHHHHHHHHH
Q 000742 442 AFQEGYRIAVEANLPSVQLSALENMHYSHMIRFDNIEEARRLQHEI 487 (1313)
Q Consensus 442 ~~~kAl~i~~~~~~~~~~~~al~~L~~~~~~~~~~~~~a~~~~e~~ 487 (1313)
.++.+..+..+ ...+...++..++. .++..+|....+.+
T Consensus 472 ~~k~a~~l~P~------~~~~~~~~~~~al~-l~e~~~A~~~~~~l 510 (822)
T PRK14574 472 ELKAVESLAPR------SLILERAQAETAMA-LQEWHQMELLTDDV 510 (822)
T ss_pred HHHHHhhhCCc------cHHHHHHHHHHHHh-hhhHHHHHHHHHHH
Confidence 99888776322 23455566665543 34445554444333
No 57
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.61 E-value=2.4e-13 Score=160.08 Aligned_cols=366 Identities=15% Similarity=0.155 Sum_probs=267.3
Q ss_pred hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccCh
Q 000742 5 EMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHF 84 (1313)
Q Consensus 5 ~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~ 84 (1313)
.|++++|.+++.++++.+|....+ |+.||.+|.++|+.++|+..+-.|-.+.++. ...|..++.....+|++
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~a--y~tL~~IyEqrGd~eK~l~~~llAAHL~p~d------~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIA--YYTLGEIYEQRGDIEKALNFWLLAAHLNPKD------YELWKRLADLSEQLGNI 223 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhh--HHHHHHHHHHcccHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHhcccH
Confidence 488999999999999999998888 9999999999999999999988887665332 58899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHH
Q 000742 85 KDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKE 164 (1313)
Q Consensus 85 ~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~ 164 (1313)
++|.-+| .+|++..|..- ...+..+.+|..+ |+...|...|.+.+.+..... ...
T Consensus 224 ~qA~~cy-~rAI~~~p~n~------~~~~ers~L~~~~--------G~~~~Am~~f~~l~~~~p~~d----------~er 278 (895)
T KOG2076|consen 224 NQARYCY-SRAIQANPSNW------ELIYERSSLYQKT--------GDLKRAMETFLQLLQLDPPVD----------IER 278 (895)
T ss_pred HHHHHHH-HHHHhcCCcch------HHHHHHHHHHHHh--------ChHHHHHHHHHHHHhhCCchh----------HHH
Confidence 9999999 99999987662 4567888899888 999999999999998844110 112
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------
Q 000742 165 YIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDII------- 237 (1313)
Q Consensus 165 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~------- 237 (1313)
.-......+..+...++-+.|++.++.++.... .......+..++.+|....+++.|......-..
T Consensus 279 ~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~-------~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~ 351 (895)
T KOG2076|consen 279 IEDLIRRVAHYFITHNERERAAKALEGALSKEK-------DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDD 351 (895)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc-------ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCCh
Confidence 334445567888888888999999999988422 222334556788999999999999988877665
Q ss_pred ---------------HHHHhchhhhHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HHccChhHHHHHHHHhHHHHH
Q 000742 238 ---------------ICKKIEHCQGEAK-GYINLGELHYRVQKYDEAILCYQKALNLA-QSMEDEDALASQIDQNIETVK 300 (1313)
Q Consensus 238 ---------------~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~kal~~~-~~~~~~~~~~~~~~~~lg~~~ 300 (1313)
+.+-..+...... ++..++.++.+.++..+++..+..--... ....+....++.++.+.|.+.
T Consensus 352 ~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~ 431 (895)
T KOG2076|consen 352 SEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYK 431 (895)
T ss_pred hhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHH
Confidence 1111111122223 36667777777777777776654322211 122233344556677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhH
Q 000742 301 KAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLS 380 (1313)
Q Consensus 301 ~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a 380 (1313)
.|+.++..+.... . .+.+..+-.+|..+...+.|+.|+++|++++... |...
T Consensus 432 ~Al~~l~~i~~~~--------------~--------~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~------p~~~ 483 (895)
T KOG2076|consen 432 EALRLLSPITNRE--------------G--------YQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA------PDNL 483 (895)
T ss_pred HHHHHHHHHhcCc--------------c--------ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC------CCch
Confidence 7777766553110 0 0113447788999999999999999999998754 5566
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH---HhCCchhHHHHHHHHHHHHHHcCCHHH
Q 000742 381 DSFLVIGESYQKLRKFNKAIKWYTKSWEMYK---SIGNLEGQALAKVNMGNVLDSNGDWAG 438 (1313)
Q Consensus 381 ~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~---~~~~~~~~~~~~~~lg~~y~~~g~~~~ 438 (1313)
++...|+.+|.++|++++|++.+++...-.. +....+.......+...+|.+.|+.++
T Consensus 484 D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 484 DARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred hhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 8889999999999999999988887552110 111123456677888999999999887
No 58
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.60 E-value=7.8e-17 Score=172.01 Aligned_cols=382 Identities=16% Similarity=0.126 Sum_probs=201.7
Q ss_pred CeEEecCCCCCcCCHHHHHHHhhcCCCcCEEEecCCCCCHHHHHHHHHHHHhcccCccceEEEccCCCCCHHHHHHHHhc
Q 000742 833 DEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICEC 912 (1313)
Q Consensus 833 ~~l~l~~~~l~~~~~~~l~~~L~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~~~~l~~L~Ls~n~l~~~~~~~l~~~ 912 (1313)
.++.|..|+|+.+.-. +++..++|+.||||+|.|+..+..++..+-. -+..+++++|+|++..-..|..+
T Consensus 70 veirLdqN~I~~iP~~----aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~------l~~Lvlyg~NkI~~l~k~~F~gL 139 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPG----AFKTLHRLRRLDLSKNNISFIAPDAFKGLAS------LLSLVLYGNNKITDLPKGAFGGL 139 (498)
T ss_pred eEEEeccCCcccCChh----hccchhhhceecccccchhhcChHhhhhhHh------hhHHHhhcCCchhhhhhhHhhhH
Confidence 5789999999887644 4556689999999999987755555444210 01344667799999998888886
Q ss_pred ccCCCCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHH-HHhcCCCccEEEeCCCCCCChhhH
Q 000742 913 PVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVAD-ALGAESTLAQLCIGYNSPVTGNAI 991 (1313)
Q Consensus 913 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L~~L~Ls~n~l~~~~~~ 991 (1313)
..|+.|.|.-|.+... ....|..+++|..|.|.+|.+. .++. .|.....++++.+..|+++.+-.+
T Consensus 140 ----~slqrLllNan~i~Ci----r~~al~dL~~l~lLslyDn~~q-----~i~~~tf~~l~~i~tlhlA~np~icdCnL 206 (498)
T KOG4237|consen 140 ----SSLQRLLLNANHINCI----RQDALRDLPSLSLLSLYDNKIQ-----SICKGTFQGLAAIKTLHLAQNPFICDCNL 206 (498)
T ss_pred ----HHHHHHhcChhhhcch----hHHHHHHhhhcchhcccchhhh-----hhccccccchhccchHhhhcCcccccccc
Confidence 7899999999998876 6778888889999999998776 3444 556677888888888874332211
Q ss_pred HHHHH-------hhccCCc----------------------ccee---ecCCCCCChHHHHHHHHHhhcCCccEEEccCC
Q 000742 992 TNLLV-------KLDTLKS----------------------FSEL---NLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCT 1039 (1313)
Q Consensus 992 ~~~~~-------~l~~~~~----------------------L~~L---~Ls~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n 1039 (1313)
..+.. .++.... ++.+ -.+.+......+.. + +.+.++|+.|+|++|
T Consensus 207 ~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~-c-f~~L~~L~~lnlsnN 284 (498)
T KOG4237|consen 207 PWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAK-C-FKKLPNLRKLNLSNN 284 (498)
T ss_pred chhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHH-H-HhhcccceEeccCCC
Confidence 11110 0000000 0000 00111111111100 0 223345555555555
Q ss_pred CCCCchHHHHHHHHhcCCCcccEEEccCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhcCCCCceeE
Q 000742 1040 NLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKV 1119 (1313)
Q Consensus 1040 ~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~ 1119 (1313)
.|+. +.++.+....+++.|.|..|+|.... ...|.++..|+.|+|.+|+|+...+.++-.+. .|.+
T Consensus 285 ~i~~-----i~~~aFe~~a~l~eL~L~~N~l~~v~----~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~-----~l~~ 350 (498)
T KOG4237|consen 285 KITR-----IEDGAFEGAAELQELYLTRNKLEFVS----SGMFQGLSGLKTLSLYDNQITTVAPGAFQTLF-----SLST 350 (498)
T ss_pred ccch-----hhhhhhcchhhhhhhhcCcchHHHHH----HHhhhccccceeeeecCCeeEEEecccccccc-----eeee
Confidence 5543 22333333345555555555554331 22344555555555555555544443333322 2555
Q ss_pred EEeecCCCCHH-HHHHHHHHhhcC-----------CCccEEEccCCCCChhhhhhhcccccccCCccccccccccccccc
Q 000742 1120 LVLSKCQLGLA-GVLQLIKALSEN-----------DTLEELNLADNASKELTLQQNLSSVNSENLQPALKTSDCVSKEVD 1187 (1313)
Q Consensus 1120 L~Ls~n~i~~~-g~~~l~~~l~~~-----------~~L~~L~Ls~N~i~~~~~~~~l~~l~~~~l~~n~~~~~~~~~~~~ 1187 (1313)
|+|-.|.+.-. -+..+.+++++. ..++.+.++.+.+++..-... ....+...+.|...+.+. ....
T Consensus 351 l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~-ee~~~~~s~~cP~~c~c~-~tVv 428 (498)
T KOG4237|consen 351 LNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGP-EELGCLTSSPCPPPCTCL-DTVV 428 (498)
T ss_pred eehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCc-cccCCCCCCCCCCCcchh-hhhH
Confidence 55555543211 112234444331 135566666666555422111 222233334444333221 1111
Q ss_pred cccccccccc-CCC-CcccccccCCccchhhhccccCCCCcccccccCCccchhhHHHHHHHHhccccCceecCCCC
Q 000742 1188 TDQHGLFAMN-TDC-NDLEVADSEDDKIRVESAASGFDNSCTSSCQKNSSFECQFVQELSSAIGMAKPLQLLDLSNN 1262 (1313)
Q Consensus 1188 ~~~~~~~~~~-~~l-~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~l~~~l~~~~~L~~LdLs~N 1262 (1313)
.|..-.-..+ ... ..-..|.+.+|.++.++.. -..+| .++|++|+++.---..|.++.+|..|-||+|
T Consensus 429 RcSnk~lk~lp~~iP~d~telyl~gn~~~~vp~~------~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 429 RCSNKLLKLLPRGIPVDVTELYLDGNAITSVPDE------LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred hhcccchhhcCCCCCchhHHHhcccchhcccCHH------HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 1111000000 000 1234556777777655331 12355 6777777776544556778888888888876
No 59
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.60 E-value=4.1e-12 Score=168.98 Aligned_cols=396 Identities=12% Similarity=0.020 Sum_probs=267.6
Q ss_pred HhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Q 000742 20 EEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELA 99 (1313)
Q Consensus 20 ~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~ 99 (1313)
...+....+..+...|..+...|+++.+..++... ..... ..........+.++...|++++|..++ .++.+..
T Consensus 366 ~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~l-p~~~~----~~~~~l~~~~a~~~~~~g~~~~a~~~l-~~a~~~~ 439 (903)
T PRK04841 366 AAGDAQLLRDILLQHGWSLFNQGELSLLEECLNAL-PWEVL----LENPRLVLLQAWLAQSQHRYSEVNTLL-ARAEQEL 439 (903)
T ss_pred HCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhC-CHHHH----hcCcchHHHHHHHHHHCCCHHHHHHHH-HHHHHhc
Confidence 33444444555556666666677776666655433 11100 111233456788888999999999999 9887765
Q ss_pred HHhc---CHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHH
Q 000742 100 KDAS---DLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQ 176 (1313)
Q Consensus 100 ~~~~---~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y 176 (1313)
.... +......+...+|.++... |++++|..+++++++.... .. ......+...+|.++
T Consensus 440 ~~~~~~~~~~~~~~~~~~~a~~~~~~--------g~~~~A~~~~~~al~~~~~---~~-------~~~~~~a~~~lg~~~ 501 (903)
T PRK04841 440 KDRNIELDGTLQAEFNALRAQVAIND--------GDPEEAERLAELALAELPL---TW-------YYSRIVATSVLGEVH 501 (903)
T ss_pred cccCcccchhHHHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHhcCCC---cc-------HHHHHHHHHHHHHHH
Confidence 4322 2222344555677777766 9999999999999875211 10 123456778899999
Q ss_pred HHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchh--hhHHHHHHH
Q 000742 177 MELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHC--QGEAKGYIN 254 (1313)
Q Consensus 177 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~--~~~~~~~~~ 254 (1313)
...|++++|..++++++...... +.......++.++|.++...|++++|..++++++.+....+.. ......+..
T Consensus 502 ~~~G~~~~A~~~~~~al~~~~~~---g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 578 (903)
T PRK04841 502 HCKGELARALAMMQQTEQMARQH---DVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRI 578 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhh---cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 99999999999999999988764 4455566788999999999999999999999999998765421 223455678
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHH
Q 000742 255 LGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERK 334 (1313)
Q Consensus 255 la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~ 334 (1313)
+|.+++..|++++|...+++++.+........ ....+..++.+....+.++.+.........+.... +......
T Consensus 579 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~----~~~~~~~ 652 (903)
T PRK04841 579 RAQLLWEWARLDEAEQCARKGLEVLSNYQPQQ--QLQCLAMLAKISLARGDLDNARRYLNRLENLLGNG----RYHSDWI 652 (903)
T ss_pred HHHHHHHhcCHHHHHHHHHHhHHhhhccCchH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc----cccHhHh
Confidence 89999999999999999999999877544221 22244455555555555555554444333322111 0000000
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHh
Q 000742 335 YLLQQNASLDR-LIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSI 413 (1313)
Q Consensus 335 ~~~~~~~~l~~-L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~ 413 (1313)
. .... ....+...++.+.|..+..+..... ..........+..+|.++...|++++|..+++++++.....
T Consensus 653 ~------~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~--~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~ 724 (903)
T PRK04841 653 A------NADKVRLIYWQMTGDKEAAANWLRQAPKPE--FANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSL 724 (903)
T ss_pred h------HHHHHHHHHHHHCCCHHHHHHHHHhcCCCC--CccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 0 0000 0122233455666666654433210 01111122345679999999999999999999999998887
Q ss_pred CCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh
Q 000742 414 GNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLP 456 (1313)
Q Consensus 414 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~ 456 (1313)
+.....+.++..+|.+|...|++++|..++++|++++...+..
T Consensus 725 g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~~ 767 (903)
T PRK04841 725 RLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGFI 767 (903)
T ss_pred CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccchh
Confidence 7777788899999999999999999999999999998776653
No 60
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=99.60 E-value=1e-14 Score=148.09 Aligned_cols=293 Identities=16% Similarity=0.108 Sum_probs=185.1
Q ss_pred CcCCHHHHHHHhhcCCCcCEEEecCCCCCHHHHHHHHHHHHhcccCccceEEEccCCC---CCHH---HHHHHHhcccCC
Q 000742 843 QDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNR---FGPT---TLFQICECPVLF 916 (1313)
Q Consensus 843 ~~~~~~~l~~~L~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~~~~l~~L~Ls~n~---l~~~---~~~~l~~~l~~~ 916 (1313)
+..++.+....|.....++.+|||+|.|+.+.+..|++.+.. ..+|...+++.-- ..+. .+..+...+..|
T Consensus 15 T~eDvk~v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~---~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkc 91 (388)
T COG5238 15 TKEDVKGVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIAN---VRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKC 91 (388)
T ss_pred ccchhhHHHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhh---hcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcC
Confidence 445566777777667889999999999999999999887653 3455666665432 2222 233444555567
Q ss_pred CCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCCCCCChhhHHHHHH
Q 000742 917 TRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLV 996 (1313)
Q Consensus 917 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 996 (1313)
++|+..+||.|-|+......+...+.+.+.|.+|.|++|+++..+-..++.++.++ .+|.
T Consensus 92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~l--------a~nK------------ 151 (388)
T COG5238 92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHL--------AYNK------------ 151 (388)
T ss_pred CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHH--------HHHh------------
Confidence 88888888888887776667777777777788888888888776666666655432 1111
Q ss_pred hhccCCccceeecCCCCCChHHHHHHHHHhhc-CCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCCChhHH
Q 000742 997 KLDTLKSFSELNLNGLKLSKPVVDRLCQLAKT-SCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCI 1075 (1313)
Q Consensus 997 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 1075 (1313)
....-|.|+.+....|++..-.....+..... ..|+++.+..|.|.+.|+..++-.-...+.+|+.|||..|.+|-.|.
T Consensus 152 Kaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS 231 (388)
T COG5238 152 KAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGS 231 (388)
T ss_pred hhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhH
Confidence 01122344444444444433323333333332 35777777777777777666543222234678888888888888888
Q ss_pred HHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhcC-CCCceeEEEeecCCCCHHHHHH--HHHHh-hcCCCccEEEcc
Q 000742 1076 HKFTASVSLVHGILELNLGGNPIMKEGANALASLLMN-PQCCLKVLVLSKCQLGLAGVLQ--LIKAL-SENDTLEELNLA 1151 (1313)
Q Consensus 1076 ~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~-~~~~L~~L~Ls~n~i~~~g~~~--l~~~l-~~~~~L~~L~Ls 1151 (1313)
..++.+++..+.|++|.+..|-++..|...+...+.. ...+|..|-+.+|.+....+.. +.... ...|-|..|.+.
T Consensus 232 ~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~n 311 (388)
T COG5238 232 RYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERN 311 (388)
T ss_pred HHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHc
Confidence 8888888887778888888888877777766555422 1224777877777654332211 22222 235667778888
Q ss_pred CCCCChh
Q 000742 1152 DNASKEL 1158 (1313)
Q Consensus 1152 ~N~i~~~ 1158 (1313)
+|+|...
T Consensus 312 gNr~~E~ 318 (388)
T COG5238 312 GNRIKEL 318 (388)
T ss_pred cCcchhH
Confidence 8988876
No 61
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=99.59 E-value=1.7e-14 Score=146.52 Aligned_cols=240 Identities=20% Similarity=0.214 Sum_probs=171.9
Q ss_pred CCCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCH-------HHHHHHHHHHhcCCCccEEEeCCCCCCCh
Q 000742 916 FTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITS-------RTIQKVADALGAESTLAQLCIGYNSPVTG 988 (1313)
Q Consensus 916 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~-------~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 988 (1313)
+..+++++||+|.|+...+..++..+.+-.+|+..+++.- +++ .....+..+|-.||.|+..+||.|. ++.
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA-fg~ 106 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA-FGS 106 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc-cCc
Confidence 3566666666666666666666666666666666666553 221 1223344555666666666666666 455
Q ss_pred hhHHHHHHhhccCCccceeecCCCCCChHHHHHHHH----------HhhcCCccEEEccCCCCCCchHHHHHHHHhcCCC
Q 000742 989 NAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQ----------LAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQ 1058 (1313)
Q Consensus 989 ~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~----------l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~ 1058 (1313)
.....+...+++.+.|.+|.|++|.++..+...++. ....|.|++.....|++........+..+.. ..
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~s-h~ 185 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLES-HE 185 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHh-hc
Confidence 545555555566666666666666666554444442 2234779999999999977655555555543 36
Q ss_pred cccEEEccCCCCChhHHHHHH-HHHhcCCCccEEEccCCCCChHHHHHHHHHhcCCCCceeEEEeecCCCCHHHHHHHHH
Q 000742 1059 ESVKLDLSYCGLESTCIHKFT-ASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIK 1137 (1313)
Q Consensus 1059 ~L~~L~Ls~n~l~~~~~~~l~-~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~ 1137 (1313)
.|+.+.+-.|.|...|+..+. ..+..+.+|+.|||..|.++-.|...++.++...+ .|+.|.+.+|-++..|...+..
T Consensus 186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~-~lrEL~lnDClls~~G~~~v~~ 264 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN-LLRELRLNDCLLSNEGVKSVLR 264 (388)
T ss_pred CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc-hhhhccccchhhccccHHHHHH
Confidence 799999999999999988764 36677999999999999999999999999997644 4899999999999999998888
Q ss_pred Hhhc--CCCccEEEccCCCCChhh
Q 000742 1138 ALSE--NDTLEELNLADNASKELT 1159 (1313)
Q Consensus 1138 ~l~~--~~~L~~L~Ls~N~i~~~~ 1159 (1313)
.+.. .++|..|-+.+|.+....
T Consensus 265 ~f~e~~~p~l~~L~~~Yne~~~~~ 288 (388)
T COG5238 265 RFNEKFVPNLMPLPGDYNERRGGI 288 (388)
T ss_pred HhhhhcCCCccccccchhhhcCce
Confidence 7754 679999999999877653
No 62
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=9.1e-14 Score=149.47 Aligned_cols=368 Identities=16% Similarity=0.134 Sum_probs=241.3
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcC
Q 000742 25 QEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASD 104 (1313)
Q Consensus 25 ~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~ 104 (1313)
..++.-....|..++...+|.+|+..|..|++..+.. +..|.+.+..+...|+|++|.-.+ ++.+++.+....
T Consensus 46 ~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~------a~yy~nRAa~~m~~~~~~~a~~da-r~~~r~kd~~~k 118 (486)
T KOG0550|consen 46 AQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDN------ASYYSNRAATLMMLGRFEEALGDA-RQSVRLKDGFSK 118 (486)
T ss_pred HHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccc------hhhhchhHHHHHHHHhHhhcccch-hhheecCCCccc
Confidence 4455566788999999999999999999999998543 788999999999999999999999 999988766542
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHH--HHHHHhccCCCCCc-chhhHHHHHHHHHHHHHHHHcCC
Q 000742 105 LVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAM--KLAQTLKENPATSR-SSFLKEYIDAHNNIGMLQMELDN 181 (1313)
Q Consensus 105 ~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al--~l~~~~~~~~~~~~-~~~~p~~~~~~~~la~~y~~~g~ 181 (1313)
.+...+.++..+ ++..+|...++..- ..+..+....+... .+-.|....+-..-+.++...|+
T Consensus 119 ------~~~r~~~c~~a~--------~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~ 184 (486)
T KOG0550|consen 119 ------GQLREGQCHLAL--------SDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGD 184 (486)
T ss_pred ------cccchhhhhhhh--------HHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhccc
Confidence 456667777666 66666665554211 11111111100000 01125566777788899999999
Q ss_pred HHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhch------hhhHHHHHHHH
Q 000742 182 LEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEH------CQGEAKGYINL 255 (1313)
Q Consensus 182 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~------~~~~~~~~~~l 255 (1313)
+++|+..--..+++ ++....+++..|.+++..++.+.|+.+|++++.+.|.... .+.....+..-
T Consensus 185 ~~~a~~ea~~ilkl---------d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~ 255 (486)
T KOG0550|consen 185 YDEAQSEAIDILKL---------DATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKER 255 (486)
T ss_pred chhHHHHHHHHHhc---------ccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhh
Confidence 99999988887777 4557788999999999999999999999999999886532 23445567777
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHH
Q 000742 256 GELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKY 335 (1313)
Q Consensus 256 a~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~ 335 (1313)
|.-.++.|+|.+|.+.|..|+.++|..... .+.+|.+.+.+.--++..
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~---naklY~nra~v~~rLgrl----------------------------- 303 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKT---NAKLYGNRALVNIRLGRL----------------------------- 303 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccch---hHHHHHHhHhhhcccCCc-----------------------------
Confidence 889999999999999999999999975443 233444444433333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCC
Q 000742 336 LLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGN 415 (1313)
Q Consensus 336 ~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~ 415 (1313)
.+|+.-.+.++.| .+....+|...|.+|..++++++|+++|+++++.....
T Consensus 304 ---------------------~eaisdc~~Al~i------D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~-- 354 (486)
T KOG0550|consen 304 ---------------------REAISDCNEALKI------DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDC-- 354 (486)
T ss_pred ---------------------hhhhhhhhhhhhc------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--
Confidence 2222333333332 23344788888888888888888888888888765431
Q ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhHHHHHHhh--cC-HHHHHHHHHHHHHHH
Q 000742 416 LEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMIRF--DN-IEEARRLQHEIDKLK 491 (1313)
Q Consensus 416 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~~~~~~al~~L~~~~~~~~--~~-~~~a~~~~e~~~~l~ 491 (1313)
..-..+......+.+.++ +.|-+.+-+.+...+.. ...+|..++.+++..- ++ .++...+.+.-..+.
T Consensus 355 --e~r~~l~~A~~aLkkSkR-----kd~ykilGi~~~as~~e-ikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~ 425 (486)
T KOG0550|consen 355 --EIRRTLREAQLALKKSKR-----KDWYKILGISRNASDDE-IKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYT 425 (486)
T ss_pred --chHHHHHHHHHHHHHhhh-----hhHHHHhhhhhhcccch-hhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHH
Confidence 111222222222211111 11223444444433332 4458888888887532 22 444444544444443
No 63
>PRK12370 invasion protein regulator; Provisional
Probab=99.58 E-value=1.6e-13 Score=169.17 Aligned_cols=243 Identities=8% Similarity=-0.064 Sum_probs=188.0
Q ss_pred hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHH
Q 000742 5 EMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNR---------GEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLG 75 (1313)
Q Consensus 5 ~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~---------g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg 75 (1313)
.+.+++|+..|++|++.+|....+ +..+|.+|... +++++|+..+++|+++.+ ....++..+|
T Consensus 274 ~~~~~~A~~~~~~Al~ldP~~a~a--~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP------~~~~a~~~lg 345 (553)
T PRK12370 274 PYSLQQALKLLTQCVNMSPNSIAP--YCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH------NNPQALGLLG 345 (553)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHH--HHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC------CCHHHHHHHH
Confidence 467889999999999999987666 77888877643 348999999999998863 3378899999
Q ss_pred HHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCC
Q 000742 76 EVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPA 155 (1313)
Q Consensus 76 ~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~ 155 (1313)
.++...|++++|+.+| ++++++.|+.. .+++.+|.+|... |++++|+..+++++++
T Consensus 346 ~~~~~~g~~~~A~~~~-~~Al~l~P~~~------~a~~~lg~~l~~~--------G~~~eAi~~~~~Al~l--------- 401 (553)
T PRK12370 346 LINTIHSEYIVGSLLF-KQANLLSPISA------DIKYYYGWNLFMA--------GQLEEALQTINECLKL--------- 401 (553)
T ss_pred HHHHHccCHHHHHHHH-HHHHHhCCCCH------HHHHHHHHHHHHC--------CCHHHHHHHHHHHHhc---------
Confidence 9999999999999999 99999987653 4678999999987 9999999999999988
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000742 156 TSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQD 235 (1313)
Q Consensus 156 ~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~ka 235 (1313)
.|..+.++..++.+++..|++++|+..++++++.. ++....++.++|.+|...|++++|...+++.
T Consensus 402 ------~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~--------~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 402 ------DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH--------LQDNPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred ------CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc--------cccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 22333455556667778899999999999988762 2334557889999999999999999999886
Q ss_pred HHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHH
Q 000742 236 IIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKK 301 (1313)
Q Consensus 236 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~ 301 (1313)
....+ ....+...++..|...|+ +|...+++.++..............++.-.|+-..
T Consensus 468 ~~~~~------~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~ 525 (553)
T PRK12370 468 STQEI------TGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIA 525 (553)
T ss_pred hhccc------hhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHH
Confidence 55533 566677888888888884 88888888777655444433334445544454433
No 64
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.58 E-value=1e-14 Score=164.57 Aligned_cols=266 Identities=18% Similarity=0.199 Sum_probs=98.3
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 000742 33 VIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRAC 112 (1313)
Q Consensus 33 ~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~ 112 (1313)
.+|.+++..|++++|++.+++.+.... ++.....+..+|.+...++++++|+..| ++.+...+.... .+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~----~~~~~~~~~~~a~La~~~~~~~~A~~ay-~~l~~~~~~~~~------~~ 81 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIA----PPDDPEYWRLLADLAWSLGDYDEAIEAY-EKLLASDKANPQ------DY 81 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc----cccccccccccccccccccccccccccc-cccccccccccc------cc
Confidence 568888888999999888866554431 1222466777888888888899998888 888876554322 23
Q ss_pred HHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000742 113 TQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRG 192 (1313)
Q Consensus 113 ~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~a 192 (1313)
..++.+ ... +++++|+.+++++.+... ....+.....++...++++++...+.++
T Consensus 82 ~~l~~l-~~~--------~~~~~A~~~~~~~~~~~~----------------~~~~l~~~l~~~~~~~~~~~~~~~l~~~ 136 (280)
T PF13429_consen 82 ERLIQL-LQD--------GDPEEALKLAEKAYERDG----------------DPRYLLSALQLYYRLGDYDEAEELLEKL 136 (280)
T ss_dssp -------------------------------------------------------------H-HHHTT-HHHHHHHHHHH
T ss_pred cccccc-ccc--------cccccccccccccccccc----------------ccchhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 344444 222 777788777776654321 1234455666777778888888888776
Q ss_pred HhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHH
Q 000742 193 LEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCY 272 (1313)
Q Consensus 193 l~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 272 (1313)
... ...+.....+..+|.+|...|++++|+..|+++++..| ....+...++.++...|++++|.+.+
T Consensus 137 ~~~-------~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P------~~~~~~~~l~~~li~~~~~~~~~~~l 203 (280)
T PF13429_consen 137 EEL-------PAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDP------DDPDARNALAWLLIDMGDYDEAREAL 203 (280)
T ss_dssp HH--------T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-T------T-HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred Hhc-------cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 643 11234566777888888888888888888888888766 56667777777777788887777766
Q ss_pred HHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHH
Q 000742 273 QKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSM 352 (1313)
Q Consensus 273 ~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~ 352 (1313)
+...+..+...
T Consensus 204 ~~~~~~~~~~~--------------------------------------------------------------------- 214 (280)
T PF13429_consen 204 KRLLKAAPDDP--------------------------------------------------------------------- 214 (280)
T ss_dssp HHHHHH-HTSC---------------------------------------------------------------------
T ss_pred HHHHHHCcCHH---------------------------------------------------------------------
Confidence 66555543322
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Q 000742 353 IFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDS 432 (1313)
Q Consensus 353 ~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~ 432 (1313)
..+..+|.+|..+|++++|+.+|+++++.. +....++..+|.++..
T Consensus 215 ----------------------------~~~~~la~~~~~lg~~~~Al~~~~~~~~~~------p~d~~~~~~~a~~l~~ 260 (280)
T PF13429_consen 215 ----------------------------DLWDALAAAYLQLGRYEEALEYLEKALKLN------PDDPLWLLAYADALEQ 260 (280)
T ss_dssp ----------------------------CHCHHHHHHHHHHT-HHHHHHHHHHHHHHS------TT-HHHHHHHHHHHT-
T ss_pred ----------------------------HHHHHHHHHhcccccccccccccccccccc------cccccccccccccccc
Confidence 344457888999999999999999988654 3677788899999999
Q ss_pred cCCHHHHHHHHHHHHHHH
Q 000742 433 NGDWAGALDAFQEGYRIA 450 (1313)
Q Consensus 433 ~g~~~~A~~~~~kAl~i~ 450 (1313)
.|++++|..+++++++..
T Consensus 261 ~g~~~~A~~~~~~~~~~l 278 (280)
T PF13429_consen 261 AGRKDEALRLRRQALRLL 278 (280)
T ss_dssp ------------------
T ss_pred cccccccccccccccccc
Confidence 999999999999887653
No 65
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.58 E-value=2.2e-15 Score=184.66 Aligned_cols=260 Identities=23% Similarity=0.132 Sum_probs=181.0
Q ss_pred CCcCEEEecCCCCCHHHHHHHHHHHHhcccCccceEEEccCCCCCHHHHHHHHhcccCCCCcCEEEecCCCCChhHHHHH
Q 000742 858 KTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYL 937 (1313)
Q Consensus 858 ~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~~~~l~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 937 (1313)
..-..|+|++|.|+.- ...+ ...+..|+|++|+|+..+. ..++|++|+|++|.|+. +
T Consensus 201 ~~~~~LdLs~~~LtsL-P~~l---------~~~L~~L~L~~N~Lt~LP~--------lp~~Lk~LdLs~N~Lts-----L 257 (788)
T PRK15387 201 NGNAVLNVGESGLTTL-PDCL---------PAHITTLVIPDNNLTSLPA--------LPPELRTLEVSGNQLTS-----L 257 (788)
T ss_pred CCCcEEEcCCCCCCcC-Ccch---------hcCCCEEEccCCcCCCCCC--------CCCCCcEEEecCCccCc-----c
Confidence 4577899999998741 1111 1257899999999986432 24799999999999985 3
Q ss_pred HHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCCCCCChhhHHHHHHhhccCCccceeecCCCCCChH
Q 000742 938 STILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKP 1017 (1313)
Q Consensus 938 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~ 1017 (1313)
+. ..++|+.|+|++|.|+. ++.. ..+|+.|+|++|.+.. ++. .+++|+.|+|++|+++..
T Consensus 258 P~---lp~sL~~L~Ls~N~L~~-----Lp~l---p~~L~~L~Ls~N~Lt~------LP~---~p~~L~~LdLS~N~L~~L 317 (788)
T PRK15387 258 PV---LPPGLLELSIFSNPLTH-----LPAL---PSGLCKLWIFGNQLTS------LPV---LPPGLQELSVSDNQLASL 317 (788)
T ss_pred cC---cccccceeeccCCchhh-----hhhc---hhhcCEEECcCCcccc------ccc---cccccceeECCCCccccC
Confidence 32 24589999999999873 3332 2579999999998421 222 246899999999998763
Q ss_pred HHHHHHHHhhcCCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCCChhHHHHHHHHHhcCCCccEEEccCCC
Q 000742 1018 VVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNP 1097 (1313)
Q Consensus 1018 ~~~~l~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~ 1097 (1313)
. . + ..+|+.|++++|.|+.. +. + ..+|+.|+|++|+|+.. +. ...+|+.|++++|.
T Consensus 318 p-~-l-----p~~L~~L~Ls~N~L~~L-----P~-l---p~~Lq~LdLS~N~Ls~L-----P~---lp~~L~~L~Ls~N~ 373 (788)
T PRK15387 318 P-A-L-----PSELCKLWAYNNQLTSL-----PT-L---PSGLQELSVSDNQLASL-----PT---LPSELYKLWAYNNR 373 (788)
T ss_pred C-C-C-----cccccccccccCccccc-----cc-c---ccccceEecCCCccCCC-----CC---CCcccceehhhccc
Confidence 1 1 1 13589999999999752 11 1 14799999999999863 21 23578999999999
Q ss_pred CChHHHHHHHHHhcCCCCceeEEEeecCCCCHHHHHHHHHHhhcCCCccEEEccCCCCChhhhhhhcccccccCCccccc
Q 000742 1098 IMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASKELTLQQNLSSVNSENLQPALK 1177 (1313)
Q Consensus 1098 i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~~l~~l~~~~l~~n~~ 1177 (1313)
|+.. + . .. ++|+.|+|++|.|+. ++.. .++|+.|+|++|.|+... ..+..|+.+++++|.+
T Consensus 374 L~~L-P-~---l~----~~L~~LdLs~N~Lt~-----LP~l---~s~L~~LdLS~N~LssIP--~l~~~L~~L~Ls~NqL 434 (788)
T PRK15387 374 LTSL-P-A---LP----SGLKELIVSGNRLTS-----LPVL---PSELKELMVSGNRLTSLP--MLPSGLLSLSVYRNQL 434 (788)
T ss_pred cccC-c-c---cc----cccceEEecCCcccC-----CCCc---ccCCCEEEccCCcCCCCC--cchhhhhhhhhccCcc
Confidence 8842 2 1 11 259999999999983 3321 357999999999998642 1224556666777766
Q ss_pred ccccccccccccccccccccCCCCcccccccCCccchhh
Q 000742 1178 TSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIRVE 1216 (1313)
Q Consensus 1178 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 1216 (1313)
+.+| ..+.++++|+.|+|++|+|++.
T Consensus 435 t~LP-------------~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 435 TRLP-------------ESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred cccC-------------hHHhhccCCCeEECCCCCCCch
Confidence 6655 2345566666666666666554
No 66
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.57 E-value=4.8e-12 Score=162.76 Aligned_cols=386 Identities=12% Similarity=0.032 Sum_probs=241.4
Q ss_pred hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccCh
Q 000742 5 EMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHF 84 (1313)
Q Consensus 5 ~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~ 84 (1313)
.|++++|.++|+...+.+........+..+...+...|..++|..+|+.... ....+|..+-..|...|++
T Consensus 383 ~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~---------pd~~Tyn~LL~a~~k~g~~ 453 (1060)
T PLN03218 383 DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN---------PTLSTFNMLMSVCASSQDI 453 (1060)
T ss_pred CcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC---------CCHHHHHHHHHHHHhCcCH
Confidence 3678889998888877654332333344556667777888888877765421 1256677777777788888
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHH
Q 000742 85 KDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKE 164 (1313)
Q Consensus 85 ~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~ 164 (1313)
++|...+ +++.+.... ++ ..+|..+...|... |++++|.+.|++..+. +-. .
T Consensus 454 e~A~~lf-~~M~~~Gl~-pD----~~tynsLI~~y~k~--------G~vd~A~~vf~eM~~~----Gv~----------P 505 (1060)
T PLN03218 454 DGALRVL-RLVQEAGLK-AD----CKLYTTLISTCAKS--------GKVDAMFEVFHEMVNA----GVE----------A 505 (1060)
T ss_pred HHHHHHH-HHHHHcCCC-CC----HHHHHHHHHHHHhC--------cCHHHHHHHHHHHHHc----CCC----------C
Confidence 8888877 766553221 12 23566677777765 7778777777776542 100 0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhch
Q 000742 165 YIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEH 244 (1313)
Q Consensus 165 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~ 244 (1313)
...+|..+...|.+.|++++|+..|.+..+. +..+ ...+|..+...|.+.|++++|.+.|++...... +
T Consensus 506 dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~-------Gv~P-D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~--g- 574 (1060)
T PLN03218 506 NVHTFGALIDGCARAGQVAKAFGAYGIMRSK-------NVKP-DRVVFNALISACGQSGAVDRAFDVLAEMKAETH--P- 574 (1060)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc-------CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcC--C-
Confidence 1457777777888888888888887776543 1122 245677777788888888888887777654311 0
Q ss_pred hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-ccChhHHHHHHHHhHHHHHHHHHHHHHHHHHH--H---HHHH
Q 000742 245 CQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQS-MEDEDALASQIDQNIETVKKAIEVMDELKKEE--Q---NLKK 318 (1313)
Q Consensus 245 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~-~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~--~---~~~~ 318 (1313)
......+|..+...|.+.|++++|.+.|+++.+..-. ....+..+...|...|++.+|...|++....- + .+..
T Consensus 575 i~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Tyns 654 (1060)
T PLN03218 575 IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSA 654 (1060)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 1123456777777788888888888888776654311 11223334445666677777777776665320 0 0111
Q ss_pred HHHHHHHhhCCchHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHH
Q 000742 319 LTRNMIIAKGTSQERKYLLQQN---------ASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGES 389 (1313)
Q Consensus 319 l~~~l~~~~~~~~~a~~~~~~~---------~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~ 389 (1313)
+ -......+..+++..+++.. ..+..+...|...+++++|.+.+++.... +. .....+|..+...
T Consensus 655 L-I~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~----g~-~PdvvtyN~LI~g 728 (1060)
T PLN03218 655 L-VDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI----KL-RPTVSTMNALITA 728 (1060)
T ss_pred H-HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHH
Confidence 1 11112234444454444442 35667777778888888888887766432 11 2234678888888
Q ss_pred HHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000742 390 YQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRI 449 (1313)
Q Consensus 390 y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i 449 (1313)
|.+.|++++|++.|+++.+. +......+|..+-.+|.+.|++++|...|.+..+.
T Consensus 729 y~k~G~~eeAlelf~eM~~~-----Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 729 LCEGNQLPKALEVLSEMKRL-----GLCPNTITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 88888888888888876532 12234456666777888888888888888887653
No 67
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.57 E-value=7e-13 Score=157.52 Aligned_cols=318 Identities=12% Similarity=0.000 Sum_probs=221.4
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHH
Q 000742 27 EARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLV 106 (1313)
Q Consensus 27 ~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~ 106 (1313)
.+......|...+..|+++.|.+.+.++.+.. +. ....+...|.++..+|++++|.+++ +++.+..+...-.
T Consensus 83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~----~~--~~~~~llaA~aa~~~g~~~~A~~~l-~~a~~~~p~~~l~- 154 (409)
T TIGR00540 83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADHA----AE--PVLNLIKAAEAAQQRGDEARANQHL-EEAAELAGNDNIL- 154 (409)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcC----CC--CHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHhCCcCchH-
Confidence 34445678888999999999999998876654 22 2556678899999999999999999 9998766554311
Q ss_pred HHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHH
Q 000742 107 EQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAK 186 (1313)
Q Consensus 107 ~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~ 186 (1313)
+....+.++... |++++|...+++..+. .|..+.++..++.+|...|++++|+
T Consensus 155 ----~~~~~a~l~l~~--------~~~~~Al~~l~~l~~~---------------~P~~~~~l~ll~~~~~~~~d~~~a~ 207 (409)
T TIGR00540 155 ----VEIARTRILLAQ--------NELHAARHGVDKLLEM---------------APRHKEVLKLAEEAYIRSGAWQALD 207 (409)
T ss_pred ----HHHHHHHHHHHC--------CCHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHHhhHHHHH
Confidence 123347777766 9999999999988877 3455789999999999999999999
Q ss_pred HHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHH
Q 000742 187 KFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYD 266 (1313)
Q Consensus 187 ~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 266 (1313)
+.+.+..+.... +......+......-+...+..+++.+.+.++....+. ..+.....+..+|..+...|+++
T Consensus 208 ~~l~~l~k~~~~-----~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~--~~~~~~~l~~~~a~~l~~~g~~~ 280 (409)
T TIGR00540 208 DIIDNMAKAGLF-----DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPR--HRRHNIALKIALAEHLIDCDDHD 280 (409)
T ss_pred HHHHHHHHcCCC-----CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCH--HHhCCHHHHHHHHHHHHHCCChH
Confidence 999998876211 12222222222233334445555566677666665432 12246788999999999999999
Q ss_pred HHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHH
Q 000742 267 EAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRL 346 (1313)
Q Consensus 267 ~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L 346 (1313)
+|.+.++++++..|+........ +... ....
T Consensus 281 ~A~~~l~~~l~~~pd~~~~~~~~----------------l~~~-------------~~l~-------------------- 311 (409)
T TIGR00540 281 SAQEIIFDGLKKLGDDRAISLPL----------------CLPI-------------PRLK-------------------- 311 (409)
T ss_pred HHHHHHHHHHhhCCCcccchhHH----------------HHHh-------------hhcC--------------------
Confidence 99999999999887654321000 0000 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhH--HHHHHHHHHHHHhhCHHHHHHHHHH--HHHHHHHhCCchhHHHH
Q 000742 347 IEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLS--DSFLVIGESYQKLRKFNKAIKWYTK--SWEMYKSIGNLEGQALA 422 (1313)
Q Consensus 347 ~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a--~~~~~lg~~y~~~g~~~~A~~~~~k--al~l~~~~~~~~~~~~~ 422 (1313)
.++..++.+.+++++ ...|..+ .++..+|++++++|++++|.++|++ +++..+ ....
T Consensus 312 ------~~~~~~~~~~~e~~l------k~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p-------~~~~ 372 (409)
T TIGR00540 312 ------PEDNEKLEKLIEKQA------KNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQL-------DAND 372 (409)
T ss_pred ------CCChHHHHHHHHHHH------HhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC-------CHHH
Confidence 011122233333332 2345566 8889999999999999999999995 544322 2233
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q 000742 423 KVNMGNVLDSNGDWAGALDAFQEGYRIAVEAN 454 (1313)
Q Consensus 423 ~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~ 454 (1313)
+..+|.++.+.|+.++|.++|++++...-..+
T Consensus 373 ~~~La~ll~~~g~~~~A~~~~~~~l~~~~~~~ 404 (409)
T TIGR00540 373 LAMAADAFDQAGDKAEAAAMRQDSLGLMLAIQ 404 (409)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccc
Confidence 66999999999999999999999988764443
No 68
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.56 E-value=4.4e-12 Score=147.08 Aligned_cols=435 Identities=11% Similarity=0.006 Sum_probs=283.2
Q ss_pred hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccCh
Q 000742 5 EMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHF 84 (1313)
Q Consensus 5 ~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~ 84 (1313)
-|+|+.+.+.|++++..-....+. |+.++..|...|.-..|+...+......+ .+.+....+..-..|+.+.+.+
T Consensus 336 ~g~f~~lae~fE~~~~~~~~~~e~--w~~~als~saag~~s~Av~ll~~~~~~~~---~ps~~s~~Lmasklc~e~l~~~ 410 (799)
T KOG4162|consen 336 CGQFEVLAEQFEQALPFSFGEHER--WYQLALSYSAAGSDSKAVNLLRESLKKSE---QPSDISVLLMASKLCIERLKLV 410 (799)
T ss_pred HHHHHHHHHHHHHHhHhhhhhHHH--HHHHHHHHHHhccchHHHHHHHhhccccc---CCCcchHHHHHHHHHHhchhhh
Confidence 478889999999988776665555 88999999999999999998888776653 1222344455556677788999
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcch---hhHHHHHHHHHHHHHHHHHhccCCCCCcchh
Q 000742 85 KDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDH---YSIRNAKKYFKSAMKLAQTLKENPATSRSSF 161 (1313)
Q Consensus 85 ~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~---~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~ 161 (1313)
++++.|. .+++...... ......+++..+|.+|..+...+..+. ....++++.+++|++.
T Consensus 411 eegldYA-~kai~~~~~~-~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~--------------- 473 (799)
T KOG4162|consen 411 EEGLDYA-QKAISLLGGQ-RSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF--------------- 473 (799)
T ss_pred hhHHHHH-HHHHHHhhhh-hhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc---------------
Confidence 9999999 9999976332 233456788999999987643221111 2234555555555554
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000742 162 LKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKK 241 (1313)
Q Consensus 162 ~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~ 241 (1313)
.|..+.+.++++.-|..+++.+.|+++..+++++-.. ..+.+|..+|.++...+++.+|+...+.+++-.+
T Consensus 474 d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~--------~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~- 544 (799)
T KOG4162|consen 474 DPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRG--------DSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG- 544 (799)
T ss_pred CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC--------ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh-
Confidence 2234578999999999999999999999999998332 3577999999999999999999999999998876
Q ss_pred hchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHH---------HHHhHHHHHHHHHHHHHHHHH
Q 000742 242 IEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQ---------IDQNIETVKKAIEVMDELKKE 312 (1313)
Q Consensus 242 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~---------~~~~lg~~~~a~~~~~~a~~~ 312 (1313)
.+.........+-...++.++|+......+.+.+........... .....++...+.+.+..+...
T Consensus 545 -----~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l 619 (799)
T KOG4162|consen 545 -----DNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL 619 (799)
T ss_pred -----hhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHH
Confidence 333333344444556789999999999999888754432211110 111111222222222222111
Q ss_pred HHH-HHHHHHH--HHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHH
Q 000742 313 EQN-LKKLTRN--MIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGES 389 (1313)
Q Consensus 313 ~~~-~~~l~~~--l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~ 389 (1313)
.+. ....... +......+.........-..+-..+..+...+.-+.|.....++..+. +..+..|+..|..
T Consensus 620 ~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~------~l~~~~~~~~G~~ 693 (799)
T KOG4162|consen 620 VASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID------PLSASVYYLRGLL 693 (799)
T ss_pred HHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc------hhhHHHHHHhhHH
Confidence 110 0000000 000000000000011111112223334444444555555555555444 5566889999999
Q ss_pred HHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHHHHHcCChhHHHHHHHhhH
Q 000742 390 YQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALD--AFQEGYRIAVEANLPSVQLSALENMH 467 (1313)
Q Consensus 390 y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~--~~~kAl~i~~~~~~~~~~~~al~~L~ 467 (1313)
+...|+..+|.+.|..|+.+.| +...+...+|.++.+.|+..-|.. .+..|+++.. ....+++.+|
T Consensus 694 ~~~~~~~~EA~~af~~Al~ldP------~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp------~n~eaW~~LG 761 (799)
T KOG4162|consen 694 LEVKGQLEEAKEAFLVALALDP------DHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP------LNHEAWYYLG 761 (799)
T ss_pred HHHHHhhHHHHHHHHHHHhcCC------CCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC------CCHHHHHHHH
Confidence 9999999999999999998765 556678889999999998887777 8888888742 2456899999
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHhhh
Q 000742 468 YSHMIRFDNIEEARRLQHEIDKLKESK 494 (1313)
Q Consensus 468 ~~~~~~~~~~~~a~~~~e~~~~l~~s~ 494 (1313)
.+....|+. ++|..-+.+...|+++-
T Consensus 762 ~v~k~~Gd~-~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 762 EVFKKLGDS-KQAAECFQAALQLEESN 787 (799)
T ss_pred HHHHHccch-HHHHHHHHHHHhhccCC
Confidence 988665544 45555556666666554
No 69
>PRK12370 invasion protein regulator; Provisional
Probab=99.55 E-value=6.5e-13 Score=163.79 Aligned_cols=207 Identities=16% Similarity=-0.017 Sum_probs=164.2
Q ss_pred cHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHcc---------ChHHHHHHH
Q 000742 24 RQEEARWANVIGDILKNR---GEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLE---------HFKDALIYQ 91 (1313)
Q Consensus 24 ~~~~a~~~~~lg~~y~~~---g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g---------~~~~A~~~~ 91 (1313)
....+..++..|..+... +.+++|+..|++|+++.+. .+.++..+|.+|...+ ++++|+..+
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~------~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~ 327 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN------SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHA 327 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc------cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHH
Confidence 344555566777655433 4578999999999988743 3778888898876543 488999999
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHH
Q 000742 92 VKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNN 171 (1313)
Q Consensus 92 ~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~ 171 (1313)
++++++.|+.. .++..+|.++... |++++|+.+|++|+++ .|..+.+++.
T Consensus 328 -~~Al~ldP~~~------~a~~~lg~~~~~~--------g~~~~A~~~~~~Al~l---------------~P~~~~a~~~ 377 (553)
T PRK12370 328 -IKATELDHNNP------QALGLLGLINTIH--------SEYIVGSLLFKQANLL---------------SPISADIKYY 377 (553)
T ss_pred -HHHHhcCCCCH------HHHHHHHHHHHHc--------cCHHHHHHHHHHHHHh---------------CCCCHHHHHH
Confidence 99999977653 5678899999877 9999999999999988 4466789999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHH
Q 000742 172 IGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKG 251 (1313)
Q Consensus 172 la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~ 251 (1313)
+|.++...|++++|+..+++++++.+. ...++..++.+++..|++++|+..+++++...+ +..+.+
T Consensus 378 lg~~l~~~G~~~eAi~~~~~Al~l~P~---------~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~-----p~~~~~ 443 (553)
T PRK12370 378 YGWNLFMAGQLEEALQTINECLKLDPT---------RAAAGITKLWITYYHTGIDDAIRLGDELRSQHL-----QDNPIL 443 (553)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCC---------ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhcc-----ccCHHH
Confidence 999999999999999999999998443 233445566677789999999999999887642 356778
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 000742 252 YINLGELHYRVQKYDEAILCYQKALNLAQ 280 (1313)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~kal~~~~ 280 (1313)
+..+|.+|...|++++|...+++.....+
T Consensus 444 ~~~la~~l~~~G~~~eA~~~~~~~~~~~~ 472 (553)
T PRK12370 444 LSMQVMFLSLKGKHELARKLTKEISTQEI 472 (553)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhhhccc
Confidence 89999999999999999999987655433
No 70
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.55 E-value=3.7e-16 Score=166.88 Aligned_cols=365 Identities=18% Similarity=0.129 Sum_probs=229.6
Q ss_pred CCcCEEEecCCCCCHHHHHHHHHHHHhcccCccceEEEccCCCCCHHHHHHHHhcccCCCCcCEEEecC-CCCChhHHHH
Q 000742 858 KTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSG-NRLTDACGSY 936 (1313)
Q Consensus 858 ~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~~~~l~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~-n~l~~~~~~~ 936 (1313)
+...+|+|..|.|+...-..+.. ..+|+.||||+|.|+.+.+.+|..+ .+|.+|-|-+ |+|++.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~-------l~~LRrLdLS~N~Is~I~p~AF~GL----~~l~~Lvlyg~NkI~~l---- 131 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKT-------LHRLRRLDLSKNNISFIAPDAFKGL----ASLLSLVLYGNNKITDL---- 131 (498)
T ss_pred CcceEEEeccCCcccCChhhccc-------hhhhceecccccchhhcChHhhhhh----HhhhHHHhhcCCchhhh----
Confidence 46788999999987655444443 3457999999999999999988886 6666665555 899986
Q ss_pred HHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCCCCCChhhHHHHHH-hhccCCccceeecCCCCC-
Q 000742 937 LSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLV-KLDTLKSFSELNLNGLKL- 1014 (1313)
Q Consensus 937 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~-~l~~~~~L~~L~Ls~n~l- 1014 (1313)
-...|..+.+|+.|.+.-|++.- ...++|..+++|..|.+-+|.+ ..+.. .+..+..++.+.+..|.+
T Consensus 132 ~k~~F~gL~slqrLllNan~i~C----ir~~al~dL~~l~lLslyDn~~------q~i~~~tf~~l~~i~tlhlA~np~i 201 (498)
T KOG4237|consen 132 PKGAFGGLSSLQRLLLNANHINC----IRQDALRDLPSLSLLSLYDNKI------QSICKGTFQGLAAIKTLHLAQNPFI 201 (498)
T ss_pred hhhHhhhHHHHHHHhcChhhhcc----hhHHHHHHhhhcchhcccchhh------hhhccccccchhccchHhhhcCccc
Confidence 45677888889999999998886 5667788899999999998873 33444 566777888888877762
Q ss_pred ChHHHHHHHHHh--------hcCCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCCChhHHHHHHHHHhcCC
Q 000742 1015 SKPVVDRLCQLA--------KTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVH 1086 (1313)
Q Consensus 1015 ~~~~~~~l~~l~--------~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~ 1086 (1313)
.+-...+++... .........|..+++.......+-..+. .+..=-.+.|.+...+ -..+|..++
T Consensus 202 cdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~e----sl~s~~~~~d~~d~~c---P~~cf~~L~ 274 (498)
T KOG4237|consen 202 CDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLE----SLPSRLSSEDFPDSIC---PAKCFKKLP 274 (498)
T ss_pred cccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHH----hHHHhhccccCcCCcC---hHHHHhhcc
Confidence 222222222211 1112233333444444433333322211 1111122333333322 234588899
Q ss_pred CccEEEccCCCCChHHHHHHHHHhcCCCCceeEEEeecCCCCHHHHHHHHHHhhcCCCccEEEccCCCCChh--hhhhhc
Q 000742 1087 GILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASKEL--TLQQNL 1164 (1313)
Q Consensus 1087 ~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~N~i~~~--~~~~~l 1164 (1313)
+|+.|+|++|.|+.....++..+- .+++|.|..|+|... -..+|.++..|+.|+|.+|+|+-. +....+
T Consensus 275 ~L~~lnlsnN~i~~i~~~aFe~~a-----~l~eL~L~~N~l~~v----~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~ 345 (498)
T KOG4237|consen 275 NLRKLNLSNNKITRIEDGAFEGAA-----ELQELYLTRNKLEFV----SSGMFQGLSGLKTLSLYDNQITTVAPGAFQTL 345 (498)
T ss_pred cceEeccCCCccchhhhhhhcchh-----hhhhhhcCcchHHHH----HHHhhhccccceeeeecCCeeEEEeccccccc
Confidence 999999999999876666665543 389999999998744 235678888999999999998877 223233
Q ss_pred ccccccCCcccccccccccccccccc-cccccccCCCC---ccccc----------------------------------
Q 000742 1165 SSVNSENLQPALKTSDCVSKEVDTDQ-HGLFAMNTDCN---DLEVA---------------------------------- 1206 (1313)
Q Consensus 1165 ~~l~~~~l~~n~~~~~~~~~~~~~~~-~~~~~~~~~l~---~L~~L---------------------------------- 1206 (1313)
..|+.++|-.|...+.|.+.|+.+=- ..-......|. .++.+
T Consensus 346 ~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~ 425 (498)
T KOG4237|consen 346 FSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLD 425 (498)
T ss_pred ceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhh
Confidence 66778888888888877777664300 00000111111 12223
Q ss_pred ---ccCCccchhhhccccCCCCcccccccCCccchhhHHHHHHHHhccccCceecCCCCCCCHHHHHHHH
Q 000742 1207 ---DSEDDKIRVESAASGFDNSCTSSCQKNSSFECQFVQELSSAIGMAKPLQLLDLSNNGFSTQAVKTLY 1273 (1313)
Q Consensus 1207 ---~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~l~~~l~~~~~L~~LdLs~N~l~~~~~~~l~ 1273 (1313)
..|+..++.+++. . ......|.|.+|.++. +|.. .+..| .+|+|+|+|+.-.-..+.
T Consensus 426 tVvRcSnk~lk~lp~~-i-----P~d~telyl~gn~~~~-vp~~--~~~~l-~~dls~n~i~~Lsn~tf~ 485 (498)
T KOG4237|consen 426 TVVRCSNKLLKLLPRG-I-----PVDVTELYLDGNAITS-VPDE--LLRSL-LLDLSNNRISSLSNYTFS 485 (498)
T ss_pred hhHhhcccchhhcCCC-C-----CchhHHHhcccchhcc-cCHH--HHhhh-hcccccCceehhhccccc
Confidence 3333333333221 1 1245678888998875 4443 45677 899999999875544443
No 71
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.54 E-value=3.2e-11 Score=137.31 Aligned_cols=447 Identities=14% Similarity=0.112 Sum_probs=286.6
Q ss_pred chhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccC
Q 000742 4 DEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEH 83 (1313)
Q Consensus 4 ~~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 83 (1313)
+.++|.+..+..+.+++..+...+. +...|..+...|+-++|..+.+.++....+. ..+|..+|.++....+
T Consensus 19 E~kQYkkgLK~~~~iL~k~~eHges--lAmkGL~L~~lg~~~ea~~~vr~glr~d~~S------~vCwHv~gl~~R~dK~ 90 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKFPEHGES--LAMKGLTLNCLGKKEEAYELVRLGLRNDLKS------HVCWHVLGLLQRSDKK 90 (700)
T ss_pred HHHHHHhHHHHHHHHHHhCCccchh--HHhccchhhcccchHHHHHHHHHHhccCccc------chhHHHHHHHHhhhhh
Confidence 3577888888888888877777666 6789999999999999999999998865332 5788899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhH
Q 000742 84 FKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLK 163 (1313)
Q Consensus 84 ~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p 163 (1313)
|++|+++| +.|+.+.+++. ..+..++....++ ++++-....-.+.+++ .|
T Consensus 91 Y~eaiKcy-~nAl~~~~dN~------qilrDlslLQ~Qm--------Rd~~~~~~tr~~LLql---------------~~ 140 (700)
T KOG1156|consen 91 YDEAIKCY-RNALKIEKDNL------QILRDLSLLQIQM--------RDYEGYLETRNQLLQL---------------RP 140 (700)
T ss_pred HHHHHHHH-HHHHhcCCCcH------HHHHHHHHHHHHH--------HhhhhHHHHHHHHHHh---------------hh
Confidence 99999999 99999987764 4678888888888 8888777777777766 44
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000742 164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIE 243 (1313)
Q Consensus 164 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~ 243 (1313)
..-..|...|..+...|++..|....+......... ..........+......+....|.+++|.+.+.+--.-.
T Consensus 141 ~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~-~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i---- 215 (700)
T KOG1156|consen 141 SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS-PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI---- 215 (700)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH----
Confidence 566789999999999999999999988887765321 112233455667777888888999888887775543322
Q ss_pred hhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHH-
Q 000742 244 HCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAI-EVMDELKKEEQNLKKLTR- 321 (1313)
Q Consensus 244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~-~~~~~a~~~~~~~~~l~~- 321 (1313)
.+........|.++.+++++++|...|...+...|+..+.+.....++....+.-+++ ..|......++......+
T Consensus 216 --~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rl 293 (700)
T KOG1156|consen 216 --VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRL 293 (700)
T ss_pred --HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhc
Confidence 2445566678999999999999999999999988876554433322221111111111 112111111111100000
Q ss_pred HHHHhhC--CchHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhC--------------Cchh
Q 000742 322 NMIIAKG--TSQERKYLLQQN------ASLDRLIEKSSMIFAWLKHCEYAKRKKRIA-SELC--------------DKGK 378 (1313)
Q Consensus 322 ~l~~~~~--~~~~a~~~~~~~------~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~-~~~~--------------~~~~ 378 (1313)
.+....+ -......++... ....++...|. +..+. .+.++...-. ..+. .+..
T Consensus 294 plsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk---~p~k~-~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Ptt 369 (700)
T KOG1156|consen 294 PLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYK---DPEKV-AFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTT 369 (700)
T ss_pred cHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHh---chhHh-HHHHHHHHHHHhhcccccCCCcccccccCCchH
Confidence 0000001 000000011110 00111111111 11111 1333322221 1111 1123
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhH
Q 000742 379 LSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSV 458 (1313)
Q Consensus 379 ~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~~~ 458 (1313)
....++.++.-|...|+++.|..|...|+. ..|...+.|...|.++...|++++|...+++|.++..
T Consensus 370 llWt~y~laqh~D~~g~~~~A~~yId~AId------HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~------- 436 (700)
T KOG1156|consen 370 LLWTLYFLAQHYDKLGDYEVALEYIDLAID------HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT------- 436 (700)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHhc------cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-------
Confidence 356778899999999999999999999984 4556778899999999999999999999999988731
Q ss_pred HHHHHHhhHHHHHHhhcCHHHHHHHHHHHHHHHhhhccchhhhcccCccccCCCCCCCC
Q 000742 459 QLSALENMHYSHMIRFDNIEEARRLQHEIDKLKESKSEDLEAYDVARDCCSETDTEGND 517 (1313)
Q Consensus 459 ~~~al~~L~~~~~~~~~~~~~a~~~~e~~~~l~~s~~~~~~~~~~~~d~~~~~~~~~~~ 517 (1313)
...+.+.-...|+.+.+..++|.+....... +..--..+..+..|.|-.++.|+
T Consensus 437 aDR~INsKcAKYmLrAn~i~eA~~~~skFTr-----~~~~~~~~L~~mqcmWf~~E~g~ 490 (700)
T KOG1156|consen 437 ADRAINSKCAKYMLRANEIEEAEEVLSKFTR-----EGFGAVNNLAEMQCMWFQLEDGE 490 (700)
T ss_pred hhHHHHHHHHHHHHHccccHHHHHHHHHhhh-----cccchhhhHHHhhhHHHhHhhhH
Confidence 1224443444566555555555544332211 11223344566668888887765
No 72
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.54 E-value=3.6e-13 Score=147.82 Aligned_cols=205 Identities=14% Similarity=0.122 Sum_probs=170.8
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcC
Q 000742 25 QEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASD 104 (1313)
Q Consensus 25 ~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~ 104 (1313)
...+..++.+|..|...|++++|+..++++++..+ ....++..+|.+|...|++++|++++ +++++..+...
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~-~~al~~~~~~~- 99 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDP------DDYLAYLALALYYQQLGELEKAEDSF-RRALTLNPNNG- 99 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc------ccHHHHHHHHHHHHHcCCHHHHHHHH-HHHHhhCCCCH-
Confidence 34566789999999999999999999999987653 23678899999999999999999999 99998866543
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHH
Q 000742 105 LVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEE 184 (1313)
Q Consensus 105 ~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~ 184 (1313)
.++..+|.+|... |++++|+.+|++++.... .+.....+..+|.++...|++++
T Consensus 100 -----~~~~~~~~~~~~~--------g~~~~A~~~~~~~~~~~~-------------~~~~~~~~~~l~~~~~~~g~~~~ 153 (234)
T TIGR02521 100 -----DVLNNYGTFLCQQ--------GKYEQAMQQFEQAIEDPL-------------YPQPARSLENAGLCALKAGDFDK 153 (234)
T ss_pred -----HHHHHHHHHHHHc--------ccHHHHHHHHHHHHhccc-------------cccchHHHHHHHHHHHHcCCHHH
Confidence 4678899999877 999999999999986411 11335678889999999999999
Q ss_pred HHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcC
Q 000742 185 AKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQK 264 (1313)
Q Consensus 185 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~ 264 (1313)
|..++.++++..+. ...++..+|.++...|++++|..++++++...+ .....+..++.++...|+
T Consensus 154 A~~~~~~~~~~~~~---------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 218 (234)
T TIGR02521 154 AEKYLTRALQIDPQ---------RPESLLELAELYYLRGQYKDARAYLERYQQTYN------QTAESLWLGIRIARALGD 218 (234)
T ss_pred HHHHHHHHHHhCcC---------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHhh
Confidence 99999999987432 355788999999999999999999999988732 456667788999999999
Q ss_pred HHHHHHHHHHHHHH
Q 000742 265 YDEAILCYQKALNL 278 (1313)
Q Consensus 265 ~~~A~~~~~kal~~ 278 (1313)
+++|..+.+.+...
T Consensus 219 ~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 219 VAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999988876654
No 73
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.54 E-value=4.6e-12 Score=149.12 Aligned_cols=348 Identities=11% Similarity=-0.006 Sum_probs=235.8
Q ss_pred cCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHH
Q 000742 22 GNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKD 101 (1313)
Q Consensus 22 ~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~ 101 (1313)
+|+...+ +..+|.+|...|++++|.+.+.++.+..+.. ....+.....|..+...|++++|...+ +++++..|.
T Consensus 2 dp~~~~a--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~e~~~~~a~~~~~~g~~~~A~~~~-~~~l~~~P~ 75 (355)
T cd05804 2 DPDFALG--HAAAALLLLLGGERPAAAAKAAAAAQALAAR---ATERERAHVEALSAWIAGDLPKALALL-EQLLDDYPR 75 (355)
T ss_pred CCccHHH--HHHHHHHHHhcCCcchHHHHHHHHHHHhccC---CCHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHCCC
Confidence 4555555 8899999999999999999998888877533 223556777899999999999999999 999988765
Q ss_pred hcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCC
Q 000742 102 ASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDN 181 (1313)
Q Consensus 102 ~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~ 181 (1313)
.. .++.. +..+... +.+..+.....+++.. .... .|....++..+|.++...|+
T Consensus 76 ~~------~a~~~-~~~~~~~--------~~~~~~~~~~~~~l~~---~~~~--------~~~~~~~~~~~a~~~~~~G~ 129 (355)
T cd05804 76 DL------LALKL-HLGAFGL--------GDFSGMRDHVARVLPL---WAPE--------NPDYWYLLGMLAFGLEEAGQ 129 (355)
T ss_pred cH------HHHHH-hHHHHHh--------cccccCchhHHHHHhc---cCcC--------CCCcHHHHHHHHHHHHHcCC
Confidence 43 22232 4444444 3333333444444433 1111 23557788899999999999
Q ss_pred HHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHH
Q 000742 182 LEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYR 261 (1313)
Q Consensus 182 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~ 261 (1313)
+++|+..+++++++.+. ...++..+|.+|...|++++|+.++++++...+. +.......+..+|.++..
T Consensus 130 ~~~A~~~~~~al~~~p~---------~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~--~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 130 YDRAEEAARRALELNPD---------DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC--SSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHHHHHHHHhhCCC---------CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC--CcchhHHHHHHHHHHHHH
Confidence 99999999999998543 3668899999999999999999999999988653 122345678899999999
Q ss_pred hcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHH
Q 000742 262 VQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNA 341 (1313)
Q Consensus 262 ~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~ 341 (1313)
.|++++|+..|++++...+........... ..... . ....+...
T Consensus 199 ~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~----~~~l~----~------------------~~~~g~~~---------- 242 (355)
T cd05804 199 RGDYEAALAIYDTHIAPSAESDPALDLLDA----ASLLW----R------------------LELAGHVD---------- 242 (355)
T ss_pred CCCHHHHHHHHHHHhccccCCChHHHHhhH----HHHHH----H------------------HHhcCCCC----------
Confidence 999999999999986543321111000000 00000 0 00000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH---hCCchh
Q 000742 342 SLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKS---IGNLEG 418 (1313)
Q Consensus 342 ~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~---~~~~~~ 418 (1313)
....|+....... ..... +.....-...+.++...|+.++|...++........ .+....
T Consensus 243 ----------~~~~w~~~~~~~~------~~~~~-~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 305 (355)
T cd05804 243 ----------VGDRWEDLADYAA------WHFPD-HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPAR 305 (355)
T ss_pred ----------hHHHHHHHHHHHH------hhcCc-ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHH
Confidence 0011111111100 00000 111122235788888999999999999988877665 333344
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHh
Q 000742 419 QALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALEN 465 (1313)
Q Consensus 419 ~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~~~~~~al~~ 465 (1313)
...+....|.++...|++++|+..+..|+.+....|....|..+...
T Consensus 306 ~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs~aq~~~~~~ 352 (355)
T cd05804 306 DVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGGSHAQRDVFEQ 352 (355)
T ss_pred hhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 56677889999999999999999999999999999988888776654
No 74
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.54 E-value=5.3e-13 Score=139.57 Aligned_cols=312 Identities=13% Similarity=0.063 Sum_probs=218.6
Q ss_pred hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccCh
Q 000742 5 EMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHF 84 (1313)
Q Consensus 5 ~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~ 84 (1313)
.+++..|+..|..|++.+|....+ ++..|.+|...|+-..|+.-+.+++++-+. ...+....|.++..+|.+
T Consensus 51 ~~Q~sDALt~yHaAve~dp~~Y~a--ifrRaT~yLAmGksk~al~Dl~rVlelKpD------F~~ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 51 RGQLSDALTHYHAAVEGDPNNYQA--IFRRATVYLAMGKSKAALQDLSRVLELKPD------FMAARIQRGVVLLKQGEL 122 (504)
T ss_pred hhhHHHHHHHHHHHHcCCchhHHH--HHHHHHHHhhhcCCccchhhHHHHHhcCcc------HHHHHHHhchhhhhcccH
Confidence 488999999999999999999888 999999999999999999999999988743 378888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHh----ccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcch
Q 000742 85 KDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMF----LRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSS 160 (1313)
Q Consensus 85 ~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~----~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~ 160 (1313)
++|...| ++.++..+..+... .++..++.+-...- .++....|+...|+++..+.+++
T Consensus 123 e~A~~DF-~~vl~~~~s~~~~~---eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-------------- 184 (504)
T KOG0624|consen 123 EQAEADF-DQVLQHEPSNGLVL---EAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-------------- 184 (504)
T ss_pred HHHHHHH-HHHHhcCCCcchhH---HHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--------------
Confidence 9999999 99998877544322 11222221111100 01111237888888888888877
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742 161 FLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICK 240 (1313)
Q Consensus 161 ~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~ 240 (1313)
.|..+..+...+.+|...|+...|+.-+..+-++... ....++.++.+++..|+.+.++..+++++++.+
T Consensus 185 -~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D---------nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldp 254 (504)
T KOG0624|consen 185 -QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD---------NTEGHYKISQLLYTVGDAENSLKEIRECLKLDP 254 (504)
T ss_pred -CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc---------chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCc
Confidence 4577889999999999999999999999999888433 567899999999999999999999999999987
Q ss_pred HhchhhhHHHHH------HHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 000742 241 KIEHCQGEAKGY------INLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQ 314 (1313)
Q Consensus 241 ~~~~~~~~~~~~------~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~ 314 (1313)
..........-+ ..-+.-....++|.++++..++.++..|.......
T Consensus 255 dHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~--------------------------- 307 (504)
T KOG0624|consen 255 DHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRY--------------------------- 307 (504)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceee---------------------------
Confidence 432111100000 00111222333344444444443333332111000
Q ss_pred HHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhh
Q 000742 315 NLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLR 394 (1313)
Q Consensus 315 ~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g 394 (1313)
.....+...+...+++.+|+.-..+.+ ...+..+.++...|.+|....
T Consensus 308 --------------------------~~~r~~c~C~~~d~~~~eAiqqC~evL------~~d~~dv~~l~dRAeA~l~dE 355 (504)
T KOG0624|consen 308 --------------------------NGFRVLCTCYREDEQFGEAIQQCKEVL------DIDPDDVQVLCDRAEAYLGDE 355 (504)
T ss_pred --------------------------eeeheeeecccccCCHHHHHHHHHHHH------hcCchHHHHHHHHHHHHhhhH
Confidence 001222333444455555555444443 455777899999999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 000742 395 KFNKAIKWYTKSWEMYK 411 (1313)
Q Consensus 395 ~~~~A~~~~~kal~l~~ 411 (1313)
.|+.|+..|++|.+..+
T Consensus 356 ~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 356 MYDDAIHDYEKALELNE 372 (504)
T ss_pred HHHHHHHHHHHHHhcCc
Confidence 99999999999998765
No 75
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.54 E-value=4.7e-15 Score=183.37 Aligned_cols=194 Identities=20% Similarity=0.185 Sum_probs=104.8
Q ss_pred ccceeecCCCCCChHHHHHHHHHhhcCCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCCChhHHHHHHHHH
Q 000742 1003 SFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASV 1082 (1313)
Q Consensus 1003 ~L~~L~Ls~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 1082 (1313)
+|+.|+|++|+++.. +..+. ++|+.|+|++|.|+. +...+. .+|+.|+|++|.|+.. +..+
T Consensus 242 ~L~~L~Ls~N~L~~L-P~~l~-----s~L~~L~Ls~N~L~~-----LP~~l~---~sL~~L~Ls~N~Lt~L-----P~~l 302 (754)
T PRK15370 242 TIQEMELSINRITEL-PERLP-----SALQSLDLFHNKISC-----LPENLP---EELRYLSVYDNSIRTL-----PAHL 302 (754)
T ss_pred cccEEECcCCccCcC-ChhHh-----CCCCEEECcCCccCc-----cccccC---CCCcEEECCCCccccC-----cccc
Confidence 455555555555421 22111 246666666666542 111111 3566666666666542 1111
Q ss_pred hcCCCccEEEccCCCCChHHHHHHHHHhcCCCCceeEEEeecCCCCHHHHHHHHHHhhcCCCccEEEccCCCCChhhhhh
Q 000742 1083 SLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASKELTLQQ 1162 (1313)
Q Consensus 1083 ~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~ 1162 (1313)
.++|+.|+|++|.++.. +..+ ..+|+.|++++|.++. ++..+. ++|+.|+|++|.|+.....+
T Consensus 303 --p~sL~~L~Ls~N~Lt~L-P~~l-------~~sL~~L~Ls~N~Lt~-----LP~~l~--~sL~~L~Ls~N~L~~LP~~l 365 (754)
T PRK15370 303 --PSGITHLNVQSNSLTAL-PETL-------PPGLKTLEAGENALTS-----LPASLP--PELQVLDVSKNQITVLPETL 365 (754)
T ss_pred --hhhHHHHHhcCCccccC-Cccc-------cccceeccccCCcccc-----CChhhc--CcccEEECCCCCCCcCChhh
Confidence 13566677777766532 1111 1147777777776652 333332 46777777777665321111
Q ss_pred hcccccccCCcccccccccccccccccccccccccCCCCcccccccCCccchhhhccccCCCCcccccccCCccchhhH-
Q 000742 1163 NLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIRVESAASGFDNSCTSSCQKNSSFECQFV- 1241 (1313)
Q Consensus 1163 ~l~~l~~~~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~- 1241 (1313)
.++|+.|+|++|.|+.+++. . ..+|+.|++++|++.
T Consensus 366 -------------------------------------p~~L~~LdLs~N~Lt~LP~~-l-----~~sL~~LdLs~N~L~~ 402 (754)
T PRK15370 366 -------------------------------------PPTITTLDVSRNALTNLPEN-L-----PAALQIMQASRNNLVR 402 (754)
T ss_pred -------------------------------------cCCcCEEECCCCcCCCCCHh-H-----HHHHHHHhhccCCccc
Confidence 13556666666666544321 1 125666666666665
Q ss_pred --HHHHHHHhccccCceecCCCCCCCHHHHHHHHHH
Q 000742 1242 --QELSSAIGMAKPLQLLDLSNNGFSTQAVKTLYCA 1275 (1313)
Q Consensus 1242 --~~l~~~l~~~~~L~~LdLs~N~l~~~~~~~l~~~ 1275 (1313)
..+|..++.++++..|+|.+|+|+...+..+-..
T Consensus 403 LP~sl~~~~~~~~~l~~L~L~~Npls~~tl~~L~~L 438 (754)
T PRK15370 403 LPESLPHFRGEGPQPTRIIVEYNPFSERTIQNMQRL 438 (754)
T ss_pred CchhHHHHhhcCCCccEEEeeCCCccHHHHHHHHHh
Confidence 2355566667899999999999998777666443
No 76
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.53 E-value=6.2e-15 Score=196.25 Aligned_cols=34 Identities=24% Similarity=0.232 Sum_probs=15.6
Q ss_pred ccccCCccchhhHHHHHHHHhccccCceecCCCC
Q 000742 1229 SCQKNSSFECQFVQELSSAIGMAKPLQLLDLSNN 1262 (1313)
Q Consensus 1229 ~L~~L~Ls~n~l~~~l~~~l~~~~~L~~LdLs~N 1262 (1313)
+|+.|+|++|+-...+|..+..+++|+.|++++|
T Consensus 870 ~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 870 NLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred CCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 4555555544433334444444444444444443
No 77
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.53 E-value=8.5e-12 Score=156.16 Aligned_cols=196 Identities=10% Similarity=-0.050 Sum_probs=154.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHH
Q 000742 28 ARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVE 107 (1313)
Q Consensus 28 a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~ 107 (1313)
+...+..+.+.++.|+++.|+..|+++++..+.. ..+...++.++...|++++|+.++ ++++ .+.....
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~------~~av~dll~l~~~~G~~~~A~~~~-eka~--~p~n~~~-- 102 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQ------SGQVDDWLQIAGWAGRDQEVIDVY-ERYQ--SSMNISS-- 102 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccc------hhhHHHHHHHHHHcCCcHHHHHHH-HHhc--cCCCCCH--
Confidence 3347889999999999999999999999887432 222227888888899999999999 9998 3333222
Q ss_pred HHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHH
Q 000742 108 QQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKK 187 (1313)
Q Consensus 108 ~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~ 187 (1313)
..+..+|.+|..+ |++++|++.|+++++. .|..+.++..++..|...++.++|++
T Consensus 103 --~~llalA~ly~~~--------gdyd~Aiely~kaL~~---------------dP~n~~~l~gLa~~y~~~~q~~eAl~ 157 (822)
T PRK14574 103 --RGLASAARAYRNE--------KRWDQALALWQSSLKK---------------DPTNPDLISGMIMTQADAGRGGVVLK 157 (822)
T ss_pred --HHHHHHHHHHHHc--------CCHHHHHHHHHHHHhh---------------CCCCHHHHHHHHHHHhhcCCHHHHHH
Confidence 3445568899877 9999999999999988 33446777888999999999999999
Q ss_pred HHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHH
Q 000742 188 FLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDE 267 (1313)
Q Consensus 188 ~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 267 (1313)
.++++....+. ...+..++.++...+++.+|++.++++++..| ....++..+..+....|-...
T Consensus 158 ~l~~l~~~dp~----------~~~~l~layL~~~~~~~~~AL~~~ekll~~~P------~n~e~~~~~~~~l~~~~~~~~ 221 (822)
T PRK14574 158 QATELAERDPT----------VQNYMTLSYLNRATDRNYDALQASSEAVRLAP------TSEEVLKNHLEILQRNRIVEP 221 (822)
T ss_pred HHHHhcccCcc----------hHHHHHHHHHHHhcchHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCcHH
Confidence 99999887332 22234456666667788779999999999976 777888888889999999888
Q ss_pred HHHHHHHH
Q 000742 268 AILCYQKA 275 (1313)
Q Consensus 268 A~~~~~ka 275 (1313)
|.+..++-
T Consensus 222 a~~l~~~~ 229 (822)
T PRK14574 222 ALRLAKEN 229 (822)
T ss_pred HHHHHHhC
Confidence 88776653
No 78
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.52 E-value=1.6e-12 Score=166.17 Aligned_cols=420 Identities=6% Similarity=-0.085 Sum_probs=242.9
Q ss_pred hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccCh
Q 000742 5 EMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHF 84 (1313)
Q Consensus 5 ~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~ 84 (1313)
.|++++|.+.|+......+.......|..+...+...++++.|.+.+..+.+.- - .....++..+..+|.+.|++
T Consensus 100 ~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g----~-~~~~~~~n~Li~~y~k~g~~ 174 (697)
T PLN03081 100 CGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG----F-EPDQYMMNRVLLMHVKCGML 174 (697)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC----C-CcchHHHHHHHHHHhcCCCH
Confidence 467888888888877654322334457777777778888888887777665432 1 12256677777788888888
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCC-c-----
Q 000742 85 KDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATS-R----- 158 (1313)
Q Consensus 85 ~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~-~----- 158 (1313)
++|.+.| ++..+ ++ ..+|..+...|... |++++|+..|++..+.. ..+... .
T Consensus 175 ~~A~~lf-~~m~~-----~~----~~t~n~li~~~~~~--------g~~~~A~~lf~~M~~~g----~~p~~~t~~~ll~ 232 (697)
T PLN03081 175 IDARRLF-DEMPE-----RN----LASWGTIIGGLVDA--------GNYREAFALFREMWEDG----SDAEPRTFVVMLR 232 (697)
T ss_pred HHHHHHH-hcCCC-----CC----eeeHHHHHHHHHHC--------cCHHHHHHHHHHHHHhC----CCCChhhHHHHHH
Confidence 8887777 65532 11 23567777777765 77788888777765321 000000 0
Q ss_pred --------------------chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHH
Q 000742 159 --------------------SSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNV 218 (1313)
Q Consensus 159 --------------------~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~ 218 (1313)
..+. ....++..+...|.+.|++++|.+.|++... ....+|..+...
T Consensus 233 a~~~~~~~~~~~~l~~~~~~~g~~-~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~------------~~~vt~n~li~~ 299 (697)
T PLN03081 233 ASAGLGSARAGQQLHCCVLKTGVV-GDTFVSCALIDMYSKCGDIEDARCVFDGMPE------------KTTVAWNSMLAG 299 (697)
T ss_pred HHhcCCcHHHHHHHHHHHHHhCCC-ccceeHHHHHHHHHHCCCHHHHHHHHHhCCC------------CChhHHHHHHHH
Confidence 0000 1123556677778888888888877765421 134567778888
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-ccChhHHHHHHHHhHH
Q 000742 219 YMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQS-MEDEDALASQIDQNIE 297 (1313)
Q Consensus 219 y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~-~~~~~~~~~~~~~~lg 297 (1313)
|...|++++|++.|++..+.. ......+|..+..++.+.|++++|.+.+..+++..-. .......+...|...|
T Consensus 300 y~~~g~~~eA~~lf~~M~~~g-----~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G 374 (697)
T PLN03081 300 YALHGYSEEALCLYYEMRDSG-----VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWG 374 (697)
T ss_pred HHhCCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCC
Confidence 888888888888887764421 1123456777777788888888888877777665311 1122233444566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742 298 TVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQN---------ASLDRLIEKSSMIFAWLKHCEYAKRKKR 368 (1313)
Q Consensus 298 ~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~---------~~l~~L~~~~~~~~~~~~A~~~~~~a~~ 368 (1313)
.+.+|...|++..+.........-......+..+++..++++. .++..+...+...+..++|.++++...+
T Consensus 375 ~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~ 454 (697)
T PLN03081 375 RMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454 (697)
T ss_pred CHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 6777777666543210000000000111233444444444432 2344555555666666666666666543
Q ss_pred HHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000742 369 IASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYR 448 (1313)
Q Consensus 369 i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~ 448 (1313)
.. + .......|..+...|.+.|++++|.+.++++ . ......+|..+..++...|+++.|...+++.++
T Consensus 455 ~~---g-~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-------~-~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~ 522 (697)
T PLN03081 455 NH---R-IKPRAMHYACMIELLGREGLLDEAYAMIRRA-------P-FKPTVNMWAALLTACRIHKNLELGRLAAEKLYG 522 (697)
T ss_pred hc---C-CCCCccchHhHHHHHHhcCCHHHHHHHHHHC-------C-CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence 21 1 1122356666777777777777777666542 1 112344577777777777777777777777654
Q ss_pred HHHHcCChhHHHHHHHhhHHHHHHhhcCHHHHHHHHHHHH
Q 000742 449 IAVEANLPSVQLSALENMHYSHMIRFDNIEEARRLQHEID 488 (1313)
Q Consensus 449 i~~~~~~~~~~~~al~~L~~~~~~~~~~~~~a~~~~e~~~ 488 (1313)
+.. + ....|..|...|. ..+..++|.++.+.+.
T Consensus 523 ~~p--~----~~~~y~~L~~~y~-~~G~~~~A~~v~~~m~ 555 (697)
T PLN03081 523 MGP--E----KLNNYVVLLNLYN-SSGRQAEAAKVVETLK 555 (697)
T ss_pred CCC--C----CCcchHHHHHHHH-hCCCHHHHHHHHHHHH
Confidence 421 1 1235556665553 3455666666665554
No 79
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.52 E-value=9.5e-11 Score=155.96 Aligned_cols=422 Identities=13% Similarity=-0.038 Sum_probs=279.3
Q ss_pred cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhc
Q 000742 24 RQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDAS 103 (1313)
Q Consensus 24 ~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~ 103 (1313)
.......+...+..+...|++.+|+.++..+-. ...........|......|++..+..++ ... .......
T Consensus 337 ~~~~~~lh~raa~~~~~~g~~~~Al~~a~~a~d-------~~~~~~ll~~~a~~l~~~g~~~~l~~~l-~~l-p~~~~~~ 407 (903)
T PRK04841 337 AQELPELHRAAAEAWLAQGFPSEAIHHALAAGD-------AQLLRDILLQHGWSLFNQGELSLLEECL-NAL-PWEVLLE 407 (903)
T ss_pred chHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC-------HHHHHHHHHHhHHHHHhcCChHHHHHHH-HhC-CHHHHhc
Confidence 333456677888889999999999987765522 2223455666777888889888766666 443 1111111
Q ss_pred CHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHH
Q 000742 104 DLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLE 183 (1313)
Q Consensus 104 ~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~ 183 (1313)
+. ......+.++... +++++|...+.++.+.......... ......+...+|.++...|+++
T Consensus 408 ~~----~l~~~~a~~~~~~--------g~~~~a~~~l~~a~~~~~~~~~~~~------~~~~~~~~~~~a~~~~~~g~~~ 469 (903)
T PRK04841 408 NP----RLVLLQAWLAQSQ--------HRYSEVNTLLARAEQELKDRNIELD------GTLQAEFNALRAQVAINDGDPE 469 (903)
T ss_pred Cc----chHHHHHHHHHHC--------CCHHHHHHHHHHHHHhccccCcccc------hhHHHHHHHHHHHHHHhCCCHH
Confidence 11 1234455555555 8999999999988776443221100 0123456667899999999999
Q ss_pred HHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhc
Q 000742 184 EAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQ 263 (1313)
Q Consensus 184 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g 263 (1313)
+|..+++++++..+. .+......++..+|.++...|++++|..++++++......+.......++..+|.++...|
T Consensus 470 ~A~~~~~~al~~~~~----~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G 545 (903)
T PRK04841 470 EAERLAELALAELPL----TWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG 545 (903)
T ss_pred HHHHHHHHHHhcCCC----ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC
Confidence 999999999986433 2333355677889999999999999999999999998877776667778899999999999
Q ss_pred CHHHHHHHHHHHHHHHHHccChh-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHH
Q 000742 264 KYDEAILCYQKALNLAQSMEDED-ALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNAS 342 (1313)
Q Consensus 264 ~~~~A~~~~~kal~~~~~~~~~~-~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~ 342 (1313)
++++|..++++++.+........ .....++..++.+....+.++++.........+.... +... ....
T Consensus 546 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~----~~~~-------~~~~ 614 (903)
T PRK04841 546 FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNY----QPQQ-------QLQC 614 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc----CchH-------HHHH
Confidence 99999999999999987654321 1111123334444444444444443333332222110 1000 1223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhh-HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHH
Q 000742 343 LDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKL-SDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQAL 421 (1313)
Q Consensus 343 l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~-a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~ 421 (1313)
+..++..+...++++.|...+.++..+.......... ..........+...|+.++|..++....... .........
T Consensus 615 ~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~--~~~~~~~~~ 692 (903)
T PRK04841 615 LAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPE--FANNHFLQG 692 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCC--CccchhHHH
Confidence 5567778888999999999999998876554322111 1111112345566889999999877655311 111111223
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhHHHHHHhhcCHHHHHHHHHHHHHH
Q 000742 422 AKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMIRFDNIEEARRLQHEIDKL 490 (1313)
Q Consensus 422 ~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~~~~~~al~~L~~~~~~~~~~~~~a~~~~e~~~~l 490 (1313)
.+..+|.++...|++++|...+++++...+..+.......++..++..+...++ .++|.........+
T Consensus 693 ~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~-~~~A~~~L~~Al~l 760 (903)
T PRK04841 693 QWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGR-KSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHH
Confidence 356899999999999999999999999998888887788888888888765554 44554444443333
No 80
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.52 E-value=5.2e-13 Score=138.78 Aligned_cols=271 Identities=14% Similarity=0.097 Sum_probs=187.3
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhhCCCCC-c---hhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 000742 36 DILKNRGEYVEALKWFRIDYDVSVKYLPEKH-L---LPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRA 111 (1313)
Q Consensus 36 ~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~-~---~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a 111 (1313)
.+|+..++...|-...+..+++......... . +.-...+|.||+++|-+.+|.+.+ +.+++..+-. ..
T Consensus 187 y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~Aekql-qssL~q~~~~-------dT 258 (478)
T KOG1129|consen 187 YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQL-QSSLTQFPHP-------DT 258 (478)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHH-HHHhhcCCch-------hH
Confidence 4566677777777666666555432211111 1 222236888888888888888888 8877765433 34
Q ss_pred HHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000742 112 CTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIR 191 (1313)
Q Consensus 112 ~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~ 191 (1313)
+..++.+|..+ .+...|+..|.+.++. .|........+|.++..++++++|.++|+.
T Consensus 259 fllLskvY~ri--------dQP~~AL~~~~~gld~---------------fP~~VT~l~g~ARi~eam~~~~~a~~lYk~ 315 (478)
T KOG1129|consen 259 FLLLSKVYQRI--------DQPERALLVIGEGLDS---------------FPFDVTYLLGQARIHEAMEQQEDALQLYKL 315 (478)
T ss_pred HHHHHHHHHHh--------ccHHHHHHHHhhhhhc---------------CCchhhhhhhhHHHHHHHHhHHHHHHHHHH
Confidence 66777777777 7777777777776655 344566667777777777777777777777
Q ss_pred HHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHH
Q 000742 192 GLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILC 271 (1313)
Q Consensus 192 al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 271 (1313)
+++. ++....+.-.+|.-|+.-++++-|+.||++.+.+.- ..+..+.++|.+.+..++++-++..
T Consensus 316 vlk~---------~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~------~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 316 VLKL---------HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA------QSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhc---------CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC------CChHHHhhHHHHHHhhcchhhhHHH
Confidence 7776 333455566667777777777777777777777754 5566777777777777777777777
Q ss_pred HHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHH
Q 000742 272 YQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSS 351 (1313)
Q Consensus 272 ~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~ 351 (1313)
|++|+......
T Consensus 381 f~RAlstat~~--------------------------------------------------------------------- 391 (478)
T KOG1129|consen 381 FQRALSTATQP--------------------------------------------------------------------- 391 (478)
T ss_pred HHHHHhhccCc---------------------------------------------------------------------
Confidence 77777655322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Q 000742 352 MIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLD 431 (1313)
Q Consensus 352 ~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~ 431 (1313)
...+++|+++|.+....|++.-|...|+-++.- ....+.++.++|..-.
T Consensus 392 -------------------------~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~------d~~h~ealnNLavL~~ 440 (478)
T KOG1129|consen 392 -------------------------GQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS------DAQHGEALNNLAVLAA 440 (478)
T ss_pred -------------------------chhhhhhhccceeEEeccchHHHHHHHHHHhcc------CcchHHHHHhHHHHHh
Confidence 122377888888888888888888888887743 3466778888888888
Q ss_pred HcCCHHHHHHHHHHHHHHHHH
Q 000742 432 SNGDWAGALDAFQEGYRIAVE 452 (1313)
Q Consensus 432 ~~g~~~~A~~~~~kAl~i~~~ 452 (1313)
+.|+.++|..++..|-.....
T Consensus 441 r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 441 RSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred hcCchHHHHHHHHHhhhhCcc
Confidence 888888888888877765433
No 81
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.52 E-value=2.9e-13 Score=135.67 Aligned_cols=171 Identities=20% Similarity=0.183 Sum_probs=154.0
Q ss_pred chhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHH
Q 000742 67 LLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKL 146 (1313)
Q Consensus 67 ~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l 146 (1313)
...+...+|.-|...|++..|.+.+ ++|+++.|+.. .+|..++.+|..+ |+.+.|.+.|++|+.+
T Consensus 34 aa~arlqLal~YL~~gd~~~A~~nl-ekAL~~DPs~~------~a~~~~A~~Yq~~--------Ge~~~A~e~YrkAlsl 98 (250)
T COG3063 34 AAKARLQLALGYLQQGDYAQAKKNL-EKALEHDPSYY------LAHLVRAHYYQKL--------GENDLADESYRKALSL 98 (250)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHhCcccH------HHHHHHHHHHHHc--------CChhhHHHHHHHHHhc
Confidence 3678889999999999999999999 99999988764 5788999999988 9999999999999998
Q ss_pred HHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHH
Q 000742 147 AQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWD 226 (1313)
Q Consensus 147 ~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~ 226 (1313)
.|...++++|.|..++.+|++++|..+|++|+.. ..-+..+..+.|+|.|..+.|+++
T Consensus 99 ---------------~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~-------P~Y~~~s~t~eN~G~Cal~~gq~~ 156 (250)
T COG3063 99 ---------------APNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD-------PAYGEPSDTLENLGLCALKAGQFD 156 (250)
T ss_pred ---------------CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC-------CCCCCcchhhhhhHHHHhhcCCch
Confidence 4456789999999999999999999999999986 344556789999999999999999
Q ss_pred HHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 000742 227 KSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQ 280 (1313)
Q Consensus 227 ~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~ 280 (1313)
.|.++|++++++.+ ........++..++..|+|..|..++++...-..
T Consensus 157 ~A~~~l~raL~~dp------~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 157 QAEEYLKRALELDP------QFPPALLELARLHYKAGDYAPARLYLERYQQRGG 204 (250)
T ss_pred hHHHHHHHHHHhCc------CCChHHHHHHHHHHhcccchHHHHHHHHHHhccc
Confidence 99999999999987 7778889999999999999999999998766554
No 82
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.52 E-value=9.7e-13 Score=148.59 Aligned_cols=225 Identities=16% Similarity=0.053 Sum_probs=167.3
Q ss_pred hhHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccC
Q 000742 6 MQMSEAKRAYRSAKEEGN--RQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEH 83 (1313)
Q Consensus 6 ~~~~~A~~~l~~a~~~~~--~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 83 (1313)
.+.+.++..+.+++...+ +...+.+++.+|.+|...|++++|+..|++++++.+ ....+|+.+|.+|...|+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P------~~~~a~~~lg~~~~~~g~ 113 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP------DMADAYNYLGIYLTQAGN 113 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHCCC
Confidence 566788888888886433 345567799999999999999999999999999863 338899999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhH
Q 000742 84 FKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLK 163 (1313)
Q Consensus 84 ~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p 163 (1313)
+++|+..| ++++++.|+.. .++.++|.++... |++++|++.|++++++... .|
T Consensus 114 ~~~A~~~~-~~Al~l~P~~~------~a~~~lg~~l~~~--------g~~~eA~~~~~~al~~~P~------------~~ 166 (296)
T PRK11189 114 FDAAYEAF-DSVLELDPTYN------YAYLNRGIALYYG--------GRYELAQDDLLAFYQDDPN------------DP 166 (296)
T ss_pred HHHHHHHH-HHHHHhCCCCH------HHHHHHHHHHHHC--------CCHHHHHHHHHHHHHhCCC------------CH
Confidence 99999999 99999987653 5789999999988 9999999999999987211 11
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-
Q 000742 164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKI- 242 (1313)
Q Consensus 164 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~- 242 (1313)
....+ ...+...+++++|+..+.++....+. + .+ ..+.++...|++.++ ..++.+.+..+..
T Consensus 167 -~~~~~---~~l~~~~~~~~~A~~~l~~~~~~~~~-------~----~~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~ 229 (296)
T PRK11189 167 -YRALW---LYLAESKLDPKQAKENLKQRYEKLDK-------E----QW-GWNIVEFYLGKISEE-TLMERLKAGATDNT 229 (296)
T ss_pred -HHHHH---HHHHHccCCHHHHHHHHHHHHhhCCc-------c----cc-HHHHHHHHccCCCHH-HHHHHHHhcCCCcH
Confidence 11122 22345578999999999887644211 1 11 135555566666443 2333333211100
Q ss_pred chhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 000742 243 EHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQ 280 (1313)
Q Consensus 243 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~ 280 (1313)
...+....+|+++|.+|...|++++|+.+|++|++..+
T Consensus 230 ~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 230 ELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 11235678999999999999999999999999998875
No 83
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.51 E-value=6.6e-13 Score=133.10 Aligned_cols=210 Identities=17% Similarity=0.130 Sum_probs=181.3
Q ss_pred cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhc
Q 000742 24 RQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDAS 103 (1313)
Q Consensus 24 ~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~ 103 (1313)
....+.+...+|.-|+..|++..|.+.+++|++..++. ..+|..+|.+|...|+.+.|.+.| ++|+.+.|+.+
T Consensus 31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~------~~a~~~~A~~Yq~~Ge~~~A~e~Y-rkAlsl~p~~G 103 (250)
T COG3063 31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSY------YLAHLVRAHYYQKLGENDLADESY-RKALSLAPNNG 103 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHcCChhhHHHHH-HHHHhcCCCcc
Confidence 35566788899999999999999999999999998554 889999999999999999999999 99999999987
Q ss_pred CHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHH
Q 000742 104 DLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLE 183 (1313)
Q Consensus 104 ~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~ 183 (1313)
+ ++++.|..+... |++++|..+|++|+.. ...+..+.++.|+|.+..+.|+++
T Consensus 104 d------VLNNYG~FLC~q--------g~~~eA~q~F~~Al~~-------------P~Y~~~s~t~eN~G~Cal~~gq~~ 156 (250)
T COG3063 104 D------VLNNYGAFLCAQ--------GRPEEAMQQFERALAD-------------PAYGEPSDTLENLGLCALKAGQFD 156 (250)
T ss_pred c------hhhhhhHHHHhC--------CChHHHHHHHHHHHhC-------------CCCCCcchhhhhhHHHHhhcCCch
Confidence 5 579999999988 9999999999999865 123456789999999999999999
Q ss_pred HHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhc
Q 000742 184 EAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQ 263 (1313)
Q Consensus 184 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g 263 (1313)
.|.++|++++++.+. .......++..++..|+|..|..++++-..... ..+..+.....+-...|
T Consensus 157 ~A~~~l~raL~~dp~---------~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~------~~A~sL~L~iriak~~g 221 (250)
T COG3063 157 QAEEYLKRALELDPQ---------FPPALLELARLHYKAGDYAPARLYLERYQQRGG------AQAESLLLGIRIAKRLG 221 (250)
T ss_pred hHHHHHHHHHHhCcC---------CChHHHHHHHHHHhcccchHHHHHHHHHHhccc------ccHHHHHHHHHHHHHhc
Confidence 999999999999443 456778899999999999999999988766543 56677777778888899
Q ss_pred CHHHHHHHHHHHHHHHHHc
Q 000742 264 KYDEAILCYQKALNLAQSM 282 (1313)
Q Consensus 264 ~~~~A~~~~~kal~~~~~~ 282 (1313)
+-+.|-+|=.+....+|..
T Consensus 222 d~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 222 DRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred cHHHHHHHHHHHHHhCCCc
Confidence 9999888877776666644
No 84
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.50 E-value=1.4e-12 Score=147.43 Aligned_cols=229 Identities=12% Similarity=0.059 Sum_probs=161.0
Q ss_pred HccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcc
Q 000742 80 RLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRS 159 (1313)
Q Consensus 80 ~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~ 159 (1313)
..+..+.++..+ .+++...+. +....+..|+.+|.+|... |++++|+..|++++++
T Consensus 38 ~~~~~e~~i~~~-~~~l~~~~~--~~~~~a~~~~~~g~~~~~~--------g~~~~A~~~~~~Al~l------------- 93 (296)
T PRK11189 38 PTLQQEVILARL-NQILASRDL--TDEERAQLHYERGVLYDSL--------GLRALARNDFSQALAL------------- 93 (296)
T ss_pred CchHHHHHHHHH-HHHHccccC--CcHhhHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHc-------------
Confidence 345678888888 888865432 2234567899999999988 9999999999999987
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000742 160 SFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIIC 239 (1313)
Q Consensus 160 ~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~ 239 (1313)
.|..+.+|+.+|.+|...|++++|+..|++++++.+ ....++.++|.++...|++++|++.|++++++.
T Consensus 94 --~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P---------~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~ 162 (296)
T PRK11189 94 --RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDP---------TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD 162 (296)
T ss_pred --CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 345688999999999999999999999999999843 356789999999999999999999999999986
Q ss_pred HHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742 240 KKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKL 319 (1313)
Q Consensus 240 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l 319 (1313)
+. .... .....++...+++++|+..+++++...+. +.+. ...++..+|+...+ ..++
T Consensus 163 P~------~~~~-~~~~~l~~~~~~~~~A~~~l~~~~~~~~~--~~~~-~~~~~~~lg~~~~~-~~~~------------ 219 (296)
T PRK11189 163 PN------DPYR-ALWLYLAESKLDPKQAKENLKQRYEKLDK--EQWG-WNIVEFYLGKISEE-TLME------------ 219 (296)
T ss_pred CC------CHHH-HHHHHHHHccCCHHHHHHHHHHHHhhCCc--cccH-HHHHHHHccCCCHH-HHHH------------
Confidence 62 2111 11122345678899999999887643321 1111 12222223332111 0111
Q ss_pred HHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHH
Q 000742 320 TRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKA 399 (1313)
Q Consensus 320 ~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A 399 (1313)
.+.+.++....+ .+....+|+.+|.+|..+|++++|
T Consensus 220 --------------------------------------~~~~~~~~~~~l------~~~~~ea~~~Lg~~~~~~g~~~~A 255 (296)
T PRK11189 220 --------------------------------------RLKAGATDNTEL------AERLCETYFYLAKYYLSLGDLDEA 255 (296)
T ss_pred --------------------------------------HHHhcCCCcHHH------HHHHHHHHHHHHHHHHHCCCHHHH
Confidence 111111111111 133458899999999999999999
Q ss_pred HHHHHHHHHHH
Q 000742 400 IKWYTKSWEMY 410 (1313)
Q Consensus 400 ~~~~~kal~l~ 410 (1313)
+.+|++|+++.
T Consensus 256 ~~~~~~Al~~~ 266 (296)
T PRK11189 256 AALFKLALANN 266 (296)
T ss_pred HHHHHHHHHhC
Confidence 99999999765
No 85
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.50 E-value=7.2e-14 Score=145.08 Aligned_cols=207 Identities=18% Similarity=0.156 Sum_probs=177.9
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcC
Q 000742 25 QEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASD 104 (1313)
Q Consensus 25 ~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~ 104 (1313)
.....|-.++|.+|+..|-+.+|.+.++.+++..+ ..+++..++.+|.+..+...|+..+ .+.++..|..-
T Consensus 220 ~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-------~~dTfllLskvY~ridQP~~AL~~~-~~gld~fP~~V- 290 (478)
T KOG1129|consen 220 TLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-------HPDTFLLLSKVYQRIDQPERALLVI-GEGLDSFPFDV- 290 (478)
T ss_pred hHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-------chhHHHHHHHHHHHhccHHHHHHHH-hhhhhcCCchh-
Confidence 34455667999999999999999999999987652 3688999999999999999999999 99998876542
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHH
Q 000742 105 LVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEE 184 (1313)
Q Consensus 105 ~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~ 184 (1313)
..+..++++|..+ +++++|.++|+.+++. .|...++...+|..|+.-++.+-
T Consensus 291 -----T~l~g~ARi~eam--------~~~~~a~~lYk~vlk~---------------~~~nvEaiAcia~~yfY~~~PE~ 342 (478)
T KOG1129|consen 291 -----TYLLGQARIHEAM--------EQQEDALQLYKLVLKL---------------HPINVEAIACIAVGYFYDNNPEM 342 (478)
T ss_pred -----hhhhhhHHHHHHH--------HhHHHHHHHHHHHHhc---------------CCccceeeeeeeeccccCCChHH
Confidence 4467899999999 9999999999999987 33456777888899999999999
Q ss_pred HHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcC
Q 000742 185 AKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQK 264 (1313)
Q Consensus 185 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~ 264 (1313)
|+.||.+.+.+- ......+.|+|.|.+..++++-++..|++|+....+ ....+.+|+++|.+....|+
T Consensus 343 AlryYRRiLqmG---------~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~---~~~aaDvWYNlg~vaV~iGD 410 (478)
T KOG1129|consen 343 ALRYYRRILQMG---------AQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQ---PGQAADVWYNLGFVAVTIGD 410 (478)
T ss_pred HHHHHHHHHHhc---------CCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccC---cchhhhhhhccceeEEeccc
Confidence 999999999982 224678999999999999999999999999998752 34568899999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 000742 265 YDEAILCYQKALNLAQ 280 (1313)
Q Consensus 265 ~~~A~~~~~kal~~~~ 280 (1313)
+.-|.++|+-|+..++
T Consensus 411 ~nlA~rcfrlaL~~d~ 426 (478)
T KOG1129|consen 411 FNLAKRCFRLALTSDA 426 (478)
T ss_pred hHHHHHHHHHHhccCc
Confidence 9999999988876544
No 86
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.49 E-value=1.3e-11 Score=145.80 Aligned_cols=306 Identities=11% Similarity=0.006 Sum_probs=207.4
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHH
Q 000742 27 EARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLV 106 (1313)
Q Consensus 27 ~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~ 106 (1313)
.+...+.-|......|+|++|.+...++-+.. +.+ ...+...+.+....|+++.|..++ +++.+..++....
T Consensus 83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~----~~p--~l~~llaA~aA~~~g~~~~A~~~l-~~A~~~~~~~~~~- 154 (398)
T PRK10747 83 RARKQTEQALLKLAEGDYQQVEKLMTRNADHA----EQP--VVNYLLAAEAAQQRGDEARANQHL-ERAAELADNDQLP- 154 (398)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcc----cch--HHHHHHHHHHHHHCCCHHHHHHHH-HHHHhcCCcchHH-
Confidence 44446778888889999999997777654321 111 333444566669999999999999 9998765554211
Q ss_pred HHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHH
Q 000742 107 EQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAK 186 (1313)
Q Consensus 107 ~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~ 186 (1313)
.....+.++... |++++|...++++.+. .|....++..++.+|...|++++|+
T Consensus 155 ----~~l~~a~l~l~~--------g~~~~Al~~l~~~~~~---------------~P~~~~al~ll~~~~~~~gdw~~a~ 207 (398)
T PRK10747 155 ----VEITRVRIQLAR--------NENHAARHGVDKLLEV---------------APRHPEVLRLAEQAYIRTGAWSSLL 207 (398)
T ss_pred ----HHHHHHHHHHHC--------CCHHHHHHHHHHHHhc---------------CCCCHHHHHHHHHHHHHHHhHHHHH
Confidence 122347788766 9999999999998877 3455789999999999999999999
Q ss_pred HHHHHHHhHhhhhccCCCchHHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh
Q 000742 187 KFLIRGLEICNEEEVSEDDDGRS----RLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRV 262 (1313)
Q Consensus 187 ~~~~~al~~~~~~~~~~~~~~~~----~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~ 262 (1313)
+.+.+..+.... +..... .++..+........+- +.+.+..+..++ ..+..+.+...+|..+...
T Consensus 208 ~~l~~l~k~~~~-----~~~~~~~l~~~a~~~l~~~~~~~~~~----~~l~~~w~~lp~--~~~~~~~~~~~~A~~l~~~ 276 (398)
T PRK10747 208 DILPSMAKAHVG-----DEEHRAMLEQQAWIGLMDQAMADQGS----EGLKRWWKNQSR--KTRHQVALQVAMAEHLIEC 276 (398)
T ss_pred HHHHHHHHcCCC-----CHHHHHHHHHHHHHHHHHHHHHhcCH----HHHHHHHHhCCH--HHhCCHHHHHHHHHHHHHC
Confidence 999888775321 111111 2332222222222222 333333322221 1236678889999999999
Q ss_pred cCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHH
Q 000742 263 QKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNAS 342 (1313)
Q Consensus 263 g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~ 342 (1313)
|+.++|...++++++.. .+.. ...++..+
T Consensus 277 g~~~~A~~~L~~~l~~~---~~~~--l~~l~~~l---------------------------------------------- 305 (398)
T PRK10747 277 DDHDTAQQIILDGLKRQ---YDER--LVLLIPRL---------------------------------------------- 305 (398)
T ss_pred CCHHHHHHHHHHHHhcC---CCHH--HHHHHhhc----------------------------------------------
Confidence 99999999999998732 1221 11111110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHH
Q 000742 343 LDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALA 422 (1313)
Q Consensus 343 l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~ 422 (1313)
..++++++.+..++.. ...|+.+..+..+|.++...+++++|.++|+++++..| ....
T Consensus 306 ---------~~~~~~~al~~~e~~l------k~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P-------~~~~ 363 (398)
T PRK10747 306 ---------KTNNPEQLEKVLRQQI------KQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRP-------DAYD 363 (398)
T ss_pred ---------cCCChHHHHHHHHHHH------hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-------CHHH
Confidence 0012222223222222 35577789999999999999999999999999998743 2344
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742 423 KVNMGNVLDSNGDWAGALDAFQEGYRIAV 451 (1313)
Q Consensus 423 ~~~lg~~y~~~g~~~~A~~~~~kAl~i~~ 451 (1313)
+..+|.++.+.|+.++|..+|++++.+..
T Consensus 364 ~~~La~~~~~~g~~~~A~~~~~~~l~~~~ 392 (398)
T PRK10747 364 YAWLADALDRLHKPEEAAAMRRDGLMLTL 392 (398)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 67899999999999999999999998753
No 87
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.49 E-value=1.3e-12 Score=143.39 Aligned_cols=198 Identities=19% Similarity=0.175 Sum_probs=157.8
Q ss_pred CCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHH
Q 000742 65 KHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAM 144 (1313)
Q Consensus 65 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al 144 (1313)
...+..+..+|.+|...|++++|+..+ +++++..|.. ..++..+|.+|... |++++|+.+|++++
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~-~~~l~~~p~~------~~~~~~la~~~~~~--------~~~~~A~~~~~~al 92 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENL-DKALEHDPDD------YLAYLALALYYQQL--------GELEKAEDSFRRAL 92 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHhCccc------HHHHHHHHHHHHHc--------CCHHHHHHHHHHHH
Confidence 334788999999999999999999999 9999876543 35788899999988 99999999999999
Q ss_pred HHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCC
Q 000742 145 KLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRM 224 (1313)
Q Consensus 145 ~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 224 (1313)
+.. |....++.++|.++...|++++|+.++++++... ..+.....+..+|.+|...|+
T Consensus 93 ~~~---------------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~ 150 (234)
T TIGR02521 93 TLN---------------PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP-------LYPQPARSLENAGLCALKAGD 150 (234)
T ss_pred hhC---------------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-------ccccchHHHHHHHHHHHHcCC
Confidence 872 2335688999999999999999999999998752 123345678899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHH
Q 000742 225 WDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIE 304 (1313)
Q Consensus 225 ~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~ 304 (1313)
+++|..++++++...+ ....++..+|.++...|++++|+.+++++++..+.........+.++...|+..++..
T Consensus 151 ~~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 224 (234)
T TIGR02521 151 FDKAEKYLTRALQIDP------QRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQR 224 (234)
T ss_pred HHHHHHHHHHHHHhCc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999998865 4567889999999999999999999999999843322222223334444444444443
Q ss_pred H
Q 000742 305 V 305 (1313)
Q Consensus 305 ~ 305 (1313)
.
T Consensus 225 ~ 225 (234)
T TIGR02521 225 Y 225 (234)
T ss_pred H
Confidence 3
No 88
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.47 E-value=1e-11 Score=158.90 Aligned_cols=376 Identities=13% Similarity=0.017 Sum_probs=265.7
Q ss_pred hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccCh
Q 000742 5 EMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHF 84 (1313)
Q Consensus 5 ~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~ 84 (1313)
.++++.|.+++..+.+.+-.. ....+..+...|.+.|++++|.+.|++..+ ....+|..+...|.+.|++
T Consensus 136 ~~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---------~~~~t~n~li~~~~~~g~~ 205 (697)
T PLN03081 136 LKSIRCVKAVYWHVESSGFEP-DQYMMNRVLLMHVKCGMLIDARRLFDEMPE---------RNLASWGTIIGGLVDAGNY 205 (697)
T ss_pred CCCHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHhcCCCHHHHHHHHhcCCC---------CCeeeHHHHHHHHHHCcCH
Confidence 356788899998888765443 345688889999999999999999987632 1256788899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHH------------------------------HHHHHHHHHHHHHHHhccCCcchhhHH
Q 000742 85 KDALIYQVKKHLELAKDASDLVE------------------------------QQRACTQLGRTYYEMFLRSDDDHYSIR 134 (1313)
Q Consensus 85 ~~A~~~~~~kal~l~~~~~~~~~------------------------------~a~a~~~lg~~y~~l~~~~~~~~~~~~ 134 (1313)
++|+..| ++.++.......... ...++..+...|... |+++
T Consensus 206 ~~A~~lf-~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~--------g~~~ 276 (697)
T PLN03081 206 REAFALF-REMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKC--------GDIE 276 (697)
T ss_pred HHHHHHH-HHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHC--------CCHH
Confidence 9999999 888654221110000 011233445555554 7777
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHH
Q 000742 135 NAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHN 214 (1313)
Q Consensus 135 ~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 214 (1313)
+|.+.|++. ... ...+|+.+...|.+.|++++|++.|++..+. +-.+ ...+|..
T Consensus 277 ~A~~vf~~m-------~~~-----------~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~-------g~~p-d~~t~~~ 330 (697)
T PLN03081 277 DARCVFDGM-------PEK-----------TTVAWNSMLAGYALHGYSEEALCLYYEMRDS-------GVSI-DQFTFSI 330 (697)
T ss_pred HHHHHHHhC-------CCC-----------ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-------CCCC-CHHHHHH
Confidence 777776543 221 2468899999999999999999999987653 1122 2357888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHH
Q 000742 215 LGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQ 294 (1313)
Q Consensus 215 lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~ 294 (1313)
+..+|...|++++|.+.+...++..- .....++..+...|.+.|++++|.+.|++..+ .....+..+...|.
T Consensus 331 ll~a~~~~g~~~~a~~i~~~m~~~g~-----~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~ 402 (697)
T PLN03081 331 MIRIFSRLALLEHAKQAHAGLIRTGF-----PLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYG 402 (697)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhCC-----CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHH
Confidence 88999999999999999888776521 24556788888999999999999999887653 22234455556777
Q ss_pred hHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhhCCchHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Q 000742 295 NIETVKKAIEVMDELKKEEQ-----NLKKLTRNMIIAKGTSQERKYLLQQN----------ASLDRLIEKSSMIFAWLKH 359 (1313)
Q Consensus 295 ~lg~~~~a~~~~~~a~~~~~-----~~~~l~~~l~~~~~~~~~a~~~~~~~----------~~l~~L~~~~~~~~~~~~A 359 (1313)
..|+..+|+..|++....-- ....+.. .....+..+++..+++.. ..+..+...+...|.+++|
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~-a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLS-ACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHH-HHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 78888888888887654210 1111111 112345556666655543 2466778888888889998
Q ss_pred HHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHH
Q 000742 360 CEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGA 439 (1313)
Q Consensus 360 ~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A 439 (1313)
.+++++. .. .....+|..+...+...|+++.|...+++.+++.+ .....|..++.+|.+.|++++|
T Consensus 482 ~~~~~~~-------~~-~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p------~~~~~y~~L~~~y~~~G~~~~A 547 (697)
T PLN03081 482 YAMIRRA-------PF-KPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGP------EKLNNYVVLLNLYNSSGRQAEA 547 (697)
T ss_pred HHHHHHC-------CC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCC------CCCcchHHHHHHHHhCCCHHHH
Confidence 8876543 22 23456799999999999999999999998876543 3445688999999999999999
Q ss_pred HHHHHHHHH
Q 000742 440 LDAFQEGYR 448 (1313)
Q Consensus 440 ~~~~~kAl~ 448 (1313)
.+.+++..+
T Consensus 548 ~~v~~~m~~ 556 (697)
T PLN03081 548 AKVVETLKR 556 (697)
T ss_pred HHHHHHHHH
Confidence 999987654
No 89
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.46 E-value=1.1e-14 Score=180.05 Aligned_cols=229 Identities=19% Similarity=0.179 Sum_probs=103.9
Q ss_pred CcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCCCCCChhhHHHHHHh
Q 000742 918 RLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLVK 997 (1313)
Q Consensus 918 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~ 997 (1313)
+|+.|+|++|.|+. ++..+. ++|++|+|++|.|+. ++..+. .+|+.|+|++|.+.. ++..
T Consensus 200 ~L~~L~Ls~N~Lts-----LP~~l~--~nL~~L~Ls~N~Lts-----LP~~l~--~~L~~L~Ls~N~L~~------LP~~ 259 (754)
T PRK15370 200 QITTLILDNNELKS-----LPENLQ--GNIKTLYANSNQLTS-----IPATLP--DTIQEMELSINRITE------LPER 259 (754)
T ss_pred CCcEEEecCCCCCc-----CChhhc--cCCCEEECCCCcccc-----CChhhh--ccccEEECcCCccCc------CChh
Confidence 45555555555553 222221 245555555555542 222121 245555555555211 1111
Q ss_pred hccCCccceeecCCCCCChHHHHHHHHHhhcCCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCCChhHHHH
Q 000742 998 LDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHK 1077 (1313)
Q Consensus 998 l~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 1077 (1313)
+ .++|+.|+|++|+|+. .+..+ .++|+.|+|++|.|+.. ...+. ++|+.|+|++|.++..
T Consensus 260 l--~s~L~~L~Ls~N~L~~-LP~~l-----~~sL~~L~Ls~N~Lt~L-----P~~lp---~sL~~L~Ls~N~Lt~L---- 319 (754)
T PRK15370 260 L--PSALQSLDLFHNKISC-LPENL-----PEELRYLSVYDNSIRTL-----PAHLP---SGITHLNVQSNSLTAL---- 319 (754)
T ss_pred H--hCCCCEEECcCCccCc-ccccc-----CCCCcEEECCCCccccC-----cccch---hhHHHHHhcCCccccC----
Confidence 1 1245555555555542 12111 12466666666655431 11111 2455666666665532
Q ss_pred HHHHHhcCCCccEEEccCCCCChHHHHHHHHHhcCCCCceeEEEeecCCCCHHHHHHHHHHhhcCCCccEEEccCCCCCh
Q 000742 1078 FTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASKE 1157 (1313)
Q Consensus 1078 l~~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~N~i~~ 1157 (1313)
+..+ .++|+.|++++|.++.. +..+. .+|+.|+|++|+|+. ++..+. ++|+.|+|++|.|+.
T Consensus 320 -P~~l--~~sL~~L~Ls~N~Lt~L-P~~l~-------~sL~~L~Ls~N~L~~-----LP~~lp--~~L~~LdLs~N~Lt~ 381 (754)
T PRK15370 320 -PETL--PPGLKTLEAGENALTSL-PASLP-------PELQVLDVSKNQITV-----LPETLP--PTITTLDVSRNALTN 381 (754)
T ss_pred -Cccc--cccceeccccCCccccC-Chhhc-------CcccEEECCCCCCCc-----CChhhc--CCcCEEECCCCcCCC
Confidence 1111 24566666666665531 11111 136666666666652 232222 356666666666654
Q ss_pred hhhhhhcccccccCCcccccccccccccccccccccccccCCCCcccccccCCccch
Q 000742 1158 LTLQQNLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIR 1214 (1313)
Q Consensus 1158 ~~~~~~l~~l~~~~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 1214 (1313)
...... ..|+.+++++|.++.+|. .+...+..++.+..|++.+|++.
T Consensus 382 LP~~l~-~sL~~LdLs~N~L~~LP~---------sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 382 LPENLP-AALQIMQASRNNLVRLPE---------SLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CCHhHH-HHHHHHhhccCCcccCch---------hHHHHhhcCCCccEEEeeCCCcc
Confidence 432222 334445555555544431 11122334456667777777764
No 90
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=3e-12 Score=137.99 Aligned_cols=276 Identities=17% Similarity=0.091 Sum_probs=213.7
Q ss_pred hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccCh
Q 000742 5 EMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHF 84 (1313)
Q Consensus 5 ~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~ 84 (1313)
+..|..|+..|..|++..|+. +..|...+..|...|+|++|.-.+++.+.+.+ .....+...+.++..+++.
T Consensus 62 ~k~Y~nal~~yt~Ai~~~pd~--a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd------~~~k~~~r~~~c~~a~~~~ 133 (486)
T KOG0550|consen 62 QKTYGNALKNYTFAIDMCPDN--ASYYSNRAATLMMLGRFEEALGDARQSVRLKD------GFSKGQLREGQCHLALSDL 133 (486)
T ss_pred HhhHHHHHHHHHHHHHhCccc--hhhhchhHHHHHHHHhHhhcccchhhheecCC------CccccccchhhhhhhhHHH
Confidence 567999999999999999998 44589999999999999999999999887763 2356777888888888888
Q ss_pred HHHHHHHHHHHH------------HHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhcc
Q 000742 85 KDALIYQVKKHL------------ELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKE 152 (1313)
Q Consensus 85 ~~A~~~~~~kal------------~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~ 152 (1313)
.+|...+ +..- .+.+.......-..+-..-+.++..+ +++++|...--..+++
T Consensus 134 i~A~~~~-~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~--------~~~~~a~~ea~~ilkl------ 198 (486)
T KOG0550|consen 134 IEAEEKL-KSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFL--------GDYDEAQSEAIDILKL------ 198 (486)
T ss_pred HHHHHHh-hhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhc--------ccchhHHHHHHHHHhc------
Confidence 8887766 4211 11111111111123334445566655 8888888776666665
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhcc---CCCchHHHHHHHHHHHHHHHcCCHHHHH
Q 000742 153 NPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEV---SEDDDGRSRLHHNLGNVYMELRMWDKSR 229 (1313)
Q Consensus 153 ~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~~lg~~y~~~g~~~~A~ 229 (1313)
.+..+.+....|.+++..++.+.|+.+|++++.+.+.... .-..+.....+..-|+-.++.|+|.+|.
T Consensus 199 ---------d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~ 269 (486)
T KOG0550|consen 199 ---------DATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAY 269 (486)
T ss_pred ---------ccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHH
Confidence 3355788999999999999999999999999998665311 0112345566778899999999999999
Q ss_pred HHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHH
Q 000742 230 EHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDEL 309 (1313)
Q Consensus 230 ~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a 309 (1313)
+.|..|+.+.|. +....+..|.+.|.+..++|+..+|+...+.|+++++.........+.++..++.+.+|+..|+++
T Consensus 270 E~Yteal~idP~--n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 270 ECYTEALNIDPS--NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHhhcCCcc--ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999985 445788999999999999999999999999999999988877777788888888888888888877
Q ss_pred HHHHH
Q 000742 310 KKEEQ 314 (1313)
Q Consensus 310 ~~~~~ 314 (1313)
.+..+
T Consensus 348 ~q~~~ 352 (486)
T KOG0550|consen 348 MQLEK 352 (486)
T ss_pred Hhhcc
Confidence 64433
No 91
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.45 E-value=3.4e-11 Score=126.06 Aligned_cols=234 Identities=17% Similarity=0.138 Sum_probs=190.0
Q ss_pred hhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChH
Q 000742 6 MQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFK 85 (1313)
Q Consensus 6 ~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~ 85 (1313)
++-++|.+.|....+.++...++ ...+|+.|...|+.+.|+...+..++-. .. .......+.+.+|.-|...|-++
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~--~ltLGnLfRsRGEvDRAIRiHQ~L~~sp-dl-T~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEA--HLTLGNLFRSRGEVDRAIRIHQTLLESP-DL-TFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHH--HHHHHHHHHhcchHHHHHHHHHHHhcCC-CC-chHHHHHHHHHHHHHHHHhhhhh
Confidence 46688999999998887776666 8899999999999999999987654321 11 12234678899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHH
Q 000742 86 DALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEY 165 (1313)
Q Consensus 86 ~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~ 165 (1313)
.|...| ....+.- ...-.++..+..+|... .+|++|++..++..++..+ .+...+
T Consensus 125 RAE~~f-~~L~de~------efa~~AlqqLl~IYQ~t--------reW~KAId~A~~L~k~~~q----------~~~~eI 179 (389)
T COG2956 125 RAEDIF-NQLVDEG------EFAEGALQQLLNIYQAT--------REWEKAIDVAERLVKLGGQ----------TYRVEI 179 (389)
T ss_pred HHHHHH-HHHhcch------hhhHHHHHHHHHHHHHh--------hHHHHHHHHHHHHHHcCCc----------cchhHH
Confidence 999999 6655421 12235678889999877 8899998888777666322 134478
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchh
Q 000742 166 IDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHC 245 (1313)
Q Consensus 166 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~ 245 (1313)
+..|..+|..+....+.+.|...+.+|++.. +.-+++-..+|.++...|+|++|++.++.+++..+
T Consensus 180 AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~---------~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~----- 245 (389)
T COG2956 180 AQFYCELAQQALASSDVDRARELLKKALQAD---------KKCVRASIILGRVELAKGDYQKAVEALERVLEQNP----- 245 (389)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC---------ccceehhhhhhHHHHhccchHHHHHHHHHHHHhCh-----
Confidence 9999999999999999999999999999984 44677888999999999999999999999988765
Q ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc
Q 000742 246 QGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSM 282 (1313)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~ 282 (1313)
.....+...|..+|..+|+.++.+.++.++.+..+..
T Consensus 246 ~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 246 EYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 4778889999999999999999999999999876543
No 92
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.45 E-value=4.3e-11 Score=154.16 Aligned_cols=332 Identities=12% Similarity=0.028 Sum_probs=179.6
Q ss_pred hhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChH
Q 000742 6 MQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFK 85 (1313)
Q Consensus 6 ~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~ 85 (1313)
++++.|.++|+.+.+.+..+ ....|..+-..|.+.|++++|.+.|+++.+.. ......+|..+...|.+.|+++
T Consensus 451 g~~e~A~~lf~~M~~~Gl~p-D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G-----v~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 451 QDIDGALRVLRLVQEAGLKA-DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG-----VEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHHCcCHH
Confidence 44555555555555543321 12235555566666666666666665554321 1112455556666666666666
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHH
Q 000742 86 DALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEY 165 (1313)
Q Consensus 86 ~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~ 165 (1313)
+|+..| ++..+..-. ++ ..+|..+...|... |++++|.+.|.+.......+ .|+
T Consensus 525 eAl~lf-~~M~~~Gv~-PD----~vTYnsLI~a~~k~--------G~~deA~~lf~eM~~~~~gi-----------~PD- 578 (1060)
T PLN03218 525 KAFGAY-GIMRSKNVK-PD----RVVFNALISACGQS--------GAVDRAFDVLAEMKAETHPI-----------DPD- 578 (1060)
T ss_pred HHHHHH-HHHHHcCCC-CC----HHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHhcCCC-----------CCc-
Confidence 666666 554432111 11 13455555555544 66666666665554321000 011
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchh
Q 000742 166 IDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHC 245 (1313)
Q Consensus 166 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~ 245 (1313)
..+|..+...|.+.|++++|.+.|++..+. +.. .....|..+...|.+.|++++|++.|++..+.. -
T Consensus 579 ~vTynaLI~ay~k~G~ldeA~elf~~M~e~-------gi~-p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G----v- 645 (1060)
T PLN03218 579 HITVGALMKACANAGQVDRAKEVYQMIHEY-------NIK-GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG----V- 645 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-------CCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----C-
Confidence 345555666666666666666666665443 111 123455666666666666666666666554321 1
Q ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcc-ChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742 246 QGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSME-DEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMI 324 (1313)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~-~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~ 324 (1313)
.....+|..+...|.+.|++++|.++++++.+...... ..+..+...|...|++.+|...|++...
T Consensus 646 ~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~------------- 712 (1060)
T PLN03218 646 KPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS------------- 712 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-------------
Confidence 12244566666666666666666666666554321100 1112222334444444444444433310
Q ss_pred HhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHH
Q 000742 325 IAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYT 404 (1313)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~ 404 (1313)
....++ ..+++.+...+...+++++|.+++++.... +- .....+|..+-..|.+.|++++|...|.
T Consensus 713 -~g~~Pd--------vvtyN~LI~gy~k~G~~eeAlelf~eM~~~----Gi-~Pd~~Ty~sLL~a~~k~G~le~A~~l~~ 778 (1060)
T PLN03218 713 -IKLRPT--------VSTMNALITALCEGNQLPKALEVLSEMKRL----GL-CPNTITYSILLVASERKDDADVGLDLLS 778 (1060)
T ss_pred -cCCCCC--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 000111 235788888899999999999999987532 22 2344677788899999999999999999
Q ss_pred HHHHH
Q 000742 405 KSWEM 409 (1313)
Q Consensus 405 kal~l 409 (1313)
++.+.
T Consensus 779 ~M~k~ 783 (1060)
T PLN03218 779 QAKED 783 (1060)
T ss_pred HHHHc
Confidence 98753
No 93
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=2.9e-09 Score=120.38 Aligned_cols=430 Identities=16% Similarity=0.068 Sum_probs=255.3
Q ss_pred cchhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHcc
Q 000742 3 RDEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLE 82 (1313)
Q Consensus 3 ~~~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g 82 (1313)
..+++|++|.+...+.+...|+...+ ++.--.+..+.++|++|++..++-.... ......+..+.|.++++
T Consensus 23 ~~~~e~e~a~k~~~Kil~~~pdd~~a--~~cKvValIq~~ky~~ALk~ikk~~~~~-------~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 23 GKNGEYEEAVKTANKILSIVPDDEDA--IRCKVVALIQLDKYEDALKLIKKNGALL-------VINSFFFEKAYCEYRLN 93 (652)
T ss_pred ccchHHHHHHHHHHHHHhcCCCcHhh--HhhhHhhhhhhhHHHHHHHHHHhcchhh-------hcchhhHHHHHHHHHcc
Confidence 45789999999999999999888777 7788888899999999996554322111 01122268899999999
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHH----------------
Q 000742 83 HFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKL---------------- 146 (1313)
Q Consensus 83 ~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l---------------- 146 (1313)
+.++|+..+ + . .....+ .+....|.+++.+ ++|++|...|+...+-
T Consensus 94 k~Dealk~~-~-~---~~~~~~-----~ll~L~AQvlYrl--------~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~ 155 (652)
T KOG2376|consen 94 KLDEALKTL-K-G---LDRLDD-----KLLELRAQVLYRL--------ERYDEALDIYQHLAKNNSDDQDEERRANLLAV 155 (652)
T ss_pred cHHHHHHHH-h-c---ccccch-----HHHHHHHHHHHHH--------hhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 999999998 6 1 111111 2345667777777 8888888888765211
Q ss_pred --------HHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCC------CchHHHHHH
Q 000742 147 --------AQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSE------DDDGRSRLH 212 (1313)
Q Consensus 147 --------~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~------~~~~~~~~~ 212 (1313)
.+..... .....+.++|.|-++...|+|.+|++.+++|++++.+....+ .......+.
T Consensus 156 ~a~l~~~~~q~v~~v--------~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~Ir 227 (652)
T KOG2376|consen 156 AAALQVQLLQSVPEV--------PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIR 227 (652)
T ss_pred HHhhhHHHHHhccCC--------CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHH
Confidence 1111111 113467889999999999999999999999988876532111 123356678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHccCh---hHH
Q 000742 213 HNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYD-EAILCYQKALNLAQSMEDE---DAL 288 (1313)
Q Consensus 213 ~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~kal~~~~~~~~~---~~~ 288 (1313)
..++.++..+|+.++|...|...+...+ .|.+..+.+-+++-.+-....=++ .++..++.-.....+.... ...
T Consensus 228 vQlayVlQ~~Gqt~ea~~iy~~~i~~~~--~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~q 305 (652)
T KOG2376|consen 228 VQLAYVLQLQGQTAEASSIYVDIIKRNP--ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQ 305 (652)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhcC--CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 8999999999999999999998887654 344555666666644332222222 1111111111111100000 001
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742 289 ASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGT-SQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKK 367 (1313)
Q Consensus 289 ~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~-~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~ 367 (1313)
...++.+.+.........+++.+....+ .+. ++.....+-+ .........+.++.+++.+..
T Consensus 306 k~~i~~N~~lL~l~tnk~~q~r~~~a~l----------p~~~p~~~~~~ll~-------~~t~~~~~~~~ka~e~L~~~~ 368 (652)
T KOG2376|consen 306 KQAIYRNNALLALFTNKMDQVRELSASL----------PGMSPESLFPILLQ-------EATKVREKKHKKAIELLLQFA 368 (652)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhC----------CccCchHHHHHHHH-------HHHHHHHHHHhhhHHHHHHHh
Confidence 1123333333333333333222111111 111 0110000000 000011112344444333332
Q ss_pred HHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000742 368 RIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKS-IGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEG 446 (1313)
Q Consensus 368 ~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~-~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kA 446 (1313)
. +.......+...++.+...+|+++.|++.+...++.... +.+....+.+--.+-..|+..++-..|...+.+|
T Consensus 369 ~-----~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~A 443 (652)
T KOG2376|consen 369 D-----GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSA 443 (652)
T ss_pred c-----cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHH
Confidence 1 222334678888999999999999999999966533321 1111122223334455677888888899999999
Q ss_pred HHHHHHcCChhHHHHHHHhhHHHHHHhhcCHHHHHHHHHHHHHHH
Q 000742 447 YRIAVEANLPSVQLSALENMHYSHMIRFDNIEEARRLQHEIDKLK 491 (1313)
Q Consensus 447 l~i~~~~~~~~~~~~al~~L~~~~~~~~~~~~~a~~~~e~~~~l~ 491 (1313)
+...+...........++..+.....+.++.++|..+.+.+.++.
T Consensus 444 i~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n 488 (652)
T KOG2376|consen 444 IKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN 488 (652)
T ss_pred HHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC
Confidence 998887655555555666555555556688888888888877654
No 94
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.43 E-value=3.1e-11 Score=136.57 Aligned_cols=351 Identities=14% Similarity=0.070 Sum_probs=253.0
Q ss_pred hhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChH
Q 000742 6 MQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFK 85 (1313)
Q Consensus 6 ~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~ 85 (1313)
+.++-|...|..+++..|..... +...+..-...|..++-..++++|+...++. ...+...+..+...|+..
T Consensus 530 ~~~~carAVya~alqvfp~k~sl--Wlra~~~ek~hgt~Esl~Allqkav~~~pka------e~lwlM~ake~w~agdv~ 601 (913)
T KOG0495|consen 530 PAIECARAVYAHALQVFPCKKSL--WLRAAMFEKSHGTRESLEALLQKAVEQCPKA------EILWLMYAKEKWKAGDVP 601 (913)
T ss_pred chHHHHHHHHHHHHhhccchhHH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCcc------hhHHHHHHHHHHhcCCcH
Confidence 45677888888888888887666 6666666677788888888899998887543 344556667778889999
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHH
Q 000742 86 DALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEY 165 (1313)
Q Consensus 86 ~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~ 165 (1313)
.|...+ .+|.+..+...+. + ++.+-... ...+++.|...|.+|.... ..
T Consensus 602 ~ar~il-~~af~~~pnseei------w--laavKle~------en~e~eraR~llakar~~s----------------gT 650 (913)
T KOG0495|consen 602 AARVIL-DQAFEANPNSEEI------W--LAAVKLEF------ENDELERARDLLAKARSIS----------------GT 650 (913)
T ss_pred HHHHHH-HHHHHhCCCcHHH------H--HHHHHHhh------ccccHHHHHHHHHHHhccC----------------Cc
Confidence 999999 8888877764432 2 22222221 3377888888888876631 22
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchh
Q 000742 166 IDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHC 245 (1313)
Q Consensus 166 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~ 245 (1313)
..+|+.-+.....+++.++|+..++++++.++. ....|..+|.++..+++.+.|.+.|...++.+|
T Consensus 651 eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~---------f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP----- 716 (913)
T KOG0495|consen 651 ERVWMKSANLERYLDNVEEALRLLEEALKSFPD---------FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCP----- 716 (913)
T ss_pred chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc---------hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCC-----
Confidence 467888888888889999999999999988655 466888999999999999999999998888877
Q ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742 246 QGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMII 325 (1313)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~ 325 (1313)
...-.|..++.+-.+.|+..+|...++++.--.|+....+......-...|....|...+.++.+..+..-.+....-.
T Consensus 717 -~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~ 795 (913)
T KOG0495|consen 717 -NSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIW 795 (913)
T ss_pred -CCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHH
Confidence 7778888999999999999999999999988888777666666666667777777777777776555544333221111
Q ss_pred hhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Q 000742 326 AKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTK 405 (1313)
Q Consensus 326 ~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~k 405 (1313)
....+.. -.+..+.+ ++- ...+.++..+|..+....++++|.+||.+
T Consensus 796 le~~~~r-----------------------kTks~DAL-------kkc---e~dphVllaia~lfw~e~k~~kar~Wf~R 842 (913)
T KOG0495|consen 796 LEPRPQR-----------------------KTKSIDAL-------KKC---EHDPHVLLAIAKLFWSEKKIEKAREWFER 842 (913)
T ss_pred hccCccc-----------------------chHHHHHH-------Hhc---cCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111100 01111111 111 23457888899999999999999999999
Q ss_pred HHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000742 406 SWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRI 449 (1313)
Q Consensus 406 al~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i 449 (1313)
|+++.++.+ .+|...-..+...|.-+.-.+.|.+....
T Consensus 843 avk~d~d~G------D~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 843 AVKKDPDNG------DAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHccCCccc------hHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 998876444 45777777888888877777777665543
No 95
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.43 E-value=3.8e-13 Score=151.89 Aligned_cols=256 Identities=14% Similarity=0.159 Sum_probs=110.1
Q ss_pred chhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccC
Q 000742 4 DEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEH 83 (1313)
Q Consensus 4 ~~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 83 (1313)
..|++++|.+.+.++.....+......+..+|.+....+++++|+..|++.+...+. ....+..++.+ ...++
T Consensus 20 ~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~------~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 20 QRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA------NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc------ccccccccccc-ccccc
Confidence 468899999999765544322223344788999999999999999999999877643 24456666666 68899
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhH
Q 000742 84 FKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLK 163 (1313)
Q Consensus 84 ~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p 163 (1313)
+++|+.++ +++.+..+.. ..+.....++... ++++++...++++..... .+
T Consensus 93 ~~~A~~~~-~~~~~~~~~~-------~~l~~~l~~~~~~--------~~~~~~~~~l~~~~~~~~-------------~~ 143 (280)
T PF13429_consen 93 PEEALKLA-EKAYERDGDP-------RYLLSALQLYYRL--------GDYDEAEELLEKLEELPA-------------AP 143 (280)
T ss_dssp ---------------------------------H-HHHT--------T-HHHHHHHHHHHHH-T----------------
T ss_pred cccccccc-cccccccccc-------chhhHHHHHHHHH--------hHHHHHHHHHHHHHhccC-------------CC
Confidence 99999999 8887654322 2344555666666 899999999988774311 12
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000742 164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIE 243 (1313)
Q Consensus 164 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~ 243 (1313)
..+..+..+|.++.+.|++++|+..|++|++..+. ...+...++.++...|+++++.+.++...+..+
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~---------~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~--- 211 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALELDPD---------DPDARNALAWLLIDMGDYDEAREALKRLLKAAP--- 211 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT----------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-H---
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---------CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCc---
Confidence 34678999999999999999999999999999443 556788899999999999998888888777764
Q ss_pred hhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHH
Q 000742 244 HCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELK 310 (1313)
Q Consensus 244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~ 310 (1313)
.....+..+|.+|..+|++++|+.+|+++++..|.........+.++...|...+|...+.++.
T Consensus 212 ---~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 212 ---DDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp ---TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred ---CHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4455778899999999999999999999999888766666666777777777777777766554
No 96
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.42 E-value=1.7e-13 Score=182.69 Aligned_cols=34 Identities=18% Similarity=0.132 Sum_probs=15.7
Q ss_pred cccEEEccCCCCChhHHHHHHHHHhcCCCccEEEccCC
Q 000742 1059 ESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGN 1096 (1313)
Q Consensus 1059 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N 1096 (1313)
+|+.|+|++|..... ++..+..+++|+.|+|++|
T Consensus 779 sL~~L~Ls~n~~l~~----lP~si~~L~~L~~L~Ls~C 812 (1153)
T PLN03210 779 SLTRLFLSDIPSLVE----LPSSIQNLHKLEHLEIENC 812 (1153)
T ss_pred cchheeCCCCCCccc----cChhhhCCCCCCEEECCCC
Confidence 455555555443222 3333444555555555544
No 97
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.42 E-value=7.4e-11 Score=123.55 Aligned_cols=271 Identities=15% Similarity=0.153 Sum_probs=200.9
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 000742 33 VIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRAC 112 (1313)
Q Consensus 33 ~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~ 112 (1313)
..|.-+.-..+.++|+..|...++..+ ...+++..+|..|...|..+.|+..- +++-..|+... .....+.
T Consensus 40 v~GlNfLLs~Q~dKAvdlF~e~l~~d~------~t~e~~ltLGnLfRsRGEvDRAIRiH--Q~L~~spdlT~-~qr~lAl 110 (389)
T COG2956 40 VKGLNFLLSNQPDKAVDLFLEMLQEDP------ETFEAHLTLGNLFRSRGEVDRAIRIH--QTLLESPDLTF-EQRLLAL 110 (389)
T ss_pred HhHHHHHhhcCcchHHHHHHHHHhcCc------hhhHHHHHHHHHHHhcchHHHHHHHH--HHHhcCCCCch-HHHHHHH
Confidence 456667777888999999988887553 33788889999999999999998775 44444444432 2345678
Q ss_pred HHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000742 113 TQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRG 192 (1313)
Q Consensus 113 ~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~a 192 (1313)
..+|.-|... |-++.|...|....+.-+ .-..+...+..+|....+|++|++..++.
T Consensus 111 ~qL~~Dym~a--------Gl~DRAE~~f~~L~de~e---------------fa~~AlqqLl~IYQ~treW~KAId~A~~L 167 (389)
T COG2956 111 QQLGRDYMAA--------GLLDRAEDIFNQLVDEGE---------------FAEGALQQLLNIYQATREWEKAIDVAERL 167 (389)
T ss_pred HHHHHHHHHh--------hhhhHHHHHHHHHhcchh---------------hhHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 8888888877 888888888877655311 23467888888888889999999888888
Q ss_pred HhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHH
Q 000742 193 LEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCY 272 (1313)
Q Consensus 193 l~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 272 (1313)
.++-++ ......+..|..+|..+....+.++|+..+.+|++..+ ...++-..+|.++...|+|++|++.+
T Consensus 168 ~k~~~q----~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~------~cvRAsi~lG~v~~~~g~y~~AV~~~ 237 (389)
T COG2956 168 VKLGGQ----TYRVEIAQFYCELAQQALASSDVDRARELLKKALQADK------KCVRASIILGRVELAKGDYQKAVEAL 237 (389)
T ss_pred HHcCCc----cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCc------cceehhhhhhHHHHhccchHHHHHHH
Confidence 877554 45566788888888888888899999999999888876 67778888899999999999999888
Q ss_pred HHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHH
Q 000742 273 QKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSM 352 (1313)
Q Consensus 273 ~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~ 352 (1313)
+.+++..+..-
T Consensus 238 e~v~eQn~~yl--------------------------------------------------------------------- 248 (389)
T COG2956 238 ERVLEQNPEYL--------------------------------------------------------------------- 248 (389)
T ss_pred HHHHHhChHHH---------------------------------------------------------------------
Confidence 88877655321
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Q 000742 353 IFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDS 432 (1313)
Q Consensus 353 ~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~ 432 (1313)
+.+...|..+|.++|+.++.+.++.++.+... ...+...++..-..
T Consensus 249 ---------------------------~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~-------g~~~~l~l~~lie~ 294 (389)
T COG2956 249 ---------------------------SEVLEMLYECYAQLGKPAEGLNFLRRAMETNT-------GADAELMLADLIEL 294 (389)
T ss_pred ---------------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC-------CccHHHHHHHHHHH
Confidence 13444577889999999999999998886543 12234455666666
Q ss_pred cCCHHHHHHHHHHHHH
Q 000742 433 NGDWAGALDAFQEGYR 448 (1313)
Q Consensus 433 ~g~~~~A~~~~~kAl~ 448 (1313)
..-.+.|..+..+-+.
T Consensus 295 ~~G~~~Aq~~l~~Ql~ 310 (389)
T COG2956 295 QEGIDAAQAYLTRQLR 310 (389)
T ss_pred hhChHHHHHHHHHHHh
Confidence 6666777776665443
No 98
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.42 E-value=4.9e-10 Score=132.83 Aligned_cols=410 Identities=13% Similarity=0.061 Sum_probs=276.2
Q ss_pred chhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccC
Q 000742 4 DEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEH 83 (1313)
Q Consensus 4 ~~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 83 (1313)
..+++..|+.-|+.|.+.+|....+ +..+|.+|...|.|..|++.|.+|..+.|.. ..+.+..+.+...+|+
T Consensus 574 ea~n~h~aV~~fQsALR~dPkD~n~--W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s------~y~~fk~A~~ecd~Gk 645 (1238)
T KOG1127|consen 574 EAHNLHGAVCEFQSALRTDPKDYNL--WLGLGEAYPESGRYSHALKVFTKASLLRPLS------KYGRFKEAVMECDNGK 645 (1238)
T ss_pred CccchhhHHHHHHHHhcCCchhHHH--HHHHHHHHHhcCceehHHHhhhhhHhcCcHh------HHHHHHHHHHHHHhhh
Confidence 3467889999999999999987666 8899999999999999999999998887543 6778889999999999
Q ss_pred hHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCC--------
Q 000742 84 FKDALIYQVKKHLELAKDA-SDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENP-------- 154 (1313)
Q Consensus 84 ~~~A~~~~~~kal~l~~~~-~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~-------- 154 (1313)
|.+|+..+ ...+...... .-....+.++..++..+... |-+.+|..+++++++.+.-.-...
T Consensus 646 Ykeald~l-~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~--------gf~~kavd~~eksie~f~~~l~h~~~~~~~~W 716 (1238)
T KOG1127|consen 646 YKEALDAL-GLIIYAFSLERTGQNGLAESVIRDAKDSAIT--------GFQKKAVDFFEKSIESFIVSLIHSLQSDRLQW 716 (1238)
T ss_pred HHHHHHHH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH--------HHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 99999999 8877654432 22344556666666666655 666666677666654432110000
Q ss_pred ----------------------------------CCCcc-------------hhhHHHHHHHHHHHHHHHH--------c
Q 000742 155 ----------------------------------ATSRS-------------SFLKEYIDAHNNIGMLQME--------L 179 (1313)
Q Consensus 155 ----------------------------------~~~~~-------------~~~p~~~~~~~~la~~y~~--------~ 179 (1313)
...+. -.....+..|+++|..|++ +
T Consensus 717 i~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~ 796 (1238)
T KOG1127|consen 717 IVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETM 796 (1238)
T ss_pred HHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcc
Confidence 00000 0001123457777877766 3
Q ss_pred CCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHH
Q 000742 180 DNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELH 259 (1313)
Q Consensus 180 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~ 259 (1313)
.+...|+..+.+++++..+ ....|..||.+ ...|++.-|...|-+++...+ ....+|.++|.++
T Consensus 797 ~~~~~Ai~c~KkaV~L~an---------n~~~WnaLGVl-sg~gnva~aQHCfIks~~sep------~~~~~W~NlgvL~ 860 (1238)
T KOG1127|consen 797 KDACTAIRCCKKAVSLCAN---------NEGLWNALGVL-SGIGNVACAQHCFIKSRFSEP------TCHCQWLNLGVLV 860 (1238)
T ss_pred hhHHHHHHHHHHHHHHhhc---------cHHHHHHHHHh-hccchhhhhhhhhhhhhhccc------cchhheeccceeE
Confidence 3445788888888887433 34567777777 566888888888888887766 6677899999999
Q ss_pred HHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHH------------HHHHHHHH-------H
Q 000742 260 YRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKK------------EEQNLKKL-------T 320 (1313)
Q Consensus 260 ~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~------------~~~~~~~l-------~ 320 (1313)
....+++.|...+.++..++|.....+...+.+....|+..+++..+....+ ++.....+ .
T Consensus 861 l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e 940 (1238)
T KOG1127|consen 861 LENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIE 940 (1238)
T ss_pred EecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchH
Confidence 9999999999999999999998887777777778888888887777766321 11111111 0
Q ss_pred HHHHHhhCCchHHH---HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHh
Q 000742 321 RNMIIAKGTSQERK---YLL----QQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKL 393 (1313)
Q Consensus 321 ~~l~~~~~~~~~a~---~~~----~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~ 393 (1313)
..+.....-+.... .++ +-+.++...|......+.|..|.+.+.+.+.+.+..-+......+--..|++++..
T Consensus 941 ~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lsl 1020 (1238)
T KOG1127|consen 941 ESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSL 1020 (1238)
T ss_pred HHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhh
Confidence 11111111100000 000 11244555666677888888888888888887766555555555777889999999
Q ss_pred hCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q 000742 394 RKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANL 455 (1313)
Q Consensus 394 g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~ 455 (1313)
|+|++|...+.+...-. ... -.......+-.|+|+++.+.|++|+.+.+...+
T Consensus 1021 gefe~A~~a~~~~~~ev-------dEd--i~gt~l~lFfkndf~~sl~~fe~aLsis~se~d 1073 (1238)
T KOG1127|consen 1021 GEFESAKKASWKEWMEV-------DED--IRGTDLTLFFKNDFFSSLEFFEQALSISNSESD 1073 (1238)
T ss_pred cchhhHhhhhcccchhH-------HHH--HhhhhHHHHHHhHHHHHHHHHHHHhhhcccccc
Confidence 99998876554322100 000 111122226789999999999999999766443
No 99
>PLN03077 Protein ECB2; Provisional
Probab=99.42 E-value=7.9e-11 Score=154.53 Aligned_cols=377 Identities=11% Similarity=0.009 Sum_probs=218.6
Q ss_pred hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccCh
Q 000742 5 EMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHF 84 (1313)
Q Consensus 5 ~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~ 84 (1313)
.|++++|.++|.+..+.+-.+ ....|..+-..+...|+.+.|.+.+..+.+.- ......+|..+...|.+.|++
T Consensus 266 ~g~~~eAl~lf~~M~~~g~~P-d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g-----~~~d~~~~n~Li~~y~k~g~~ 339 (857)
T PLN03077 266 NGECLEGLELFFTMRELSVDP-DLMTITSVISACELLGDERLGREMHGYVVKTG-----FAVDVSVCNSLIQMYLSLGSW 339 (857)
T ss_pred CCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC-----CccchHHHHHHHHHHHhcCCH
Confidence 577888999998887764332 23346667777778888888888877765442 122356777888888888888
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHH
Q 000742 85 KDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKE 164 (1313)
Q Consensus 85 ~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~ 164 (1313)
++|.+.| ++... ++ ..+|..+...|... |++++|++.|++..+. +-.+ +
T Consensus 340 ~~A~~vf-~~m~~-----~d----~~s~n~li~~~~~~--------g~~~~A~~lf~~M~~~----g~~P---------d 388 (857)
T PLN03077 340 GEAEKVF-SRMET-----KD----AVSWTAMISGYEKN--------GLPDKALETYALMEQD----NVSP---------D 388 (857)
T ss_pred HHHHHHH-hhCCC-----CC----eeeHHHHHHHHHhC--------CCHHHHHHHHHHHHHh----CCCC---------C
Confidence 8888888 66431 12 23577777777766 7888888888776432 1111 1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhch
Q 000742 165 YIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEH 244 (1313)
Q Consensus 165 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~ 244 (1313)
..++..+-..+...|++++|.+.+..+.+. +..+ ...++..+...|.+.|++++|.+.|++..+
T Consensus 389 -~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~-------g~~~-~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~------- 452 (857)
T PLN03077 389 -EITIASVLSACACLGDLDVGVKLHELAERK-------GLIS-YVVVANALIEMYSKCKCIDKALEVFHNIPE------- 452 (857)
T ss_pred -ceeHHHHHHHHhccchHHHHHHHHHHHHHh-------CCCc-chHHHHHHHHHHHHcCCHHHHHHHHHhCCC-------
Confidence 134455555667777777777777777654 1111 345666777777777777777777765421
Q ss_pred hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----HHHHH
Q 000742 245 CQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQN----LKKLT 320 (1313)
Q Consensus 245 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~----~~~l~ 320 (1313)
....+|..+...|...|++++|+..|++.+.-.+...........++..+|....+...+..+.+..-. .....
T Consensus 453 --~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naL 530 (857)
T PLN03077 453 --KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNAL 530 (857)
T ss_pred --CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHH
Confidence 223466667777777777777777777775421111111122223445555555555555444321100 00000
Q ss_pred HHHHHhhCCchHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCH
Q 000742 321 RNMIIAKGTSQERKYLLQQ----NASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKF 396 (1313)
Q Consensus 321 ~~l~~~~~~~~~a~~~~~~----~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~ 396 (1313)
-......+..+++...++. ..+++.+...+...|+.++|.+.+++.... +..| ...+|..+-.++.+.|++
T Consensus 531 i~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~----g~~P-d~~T~~~ll~a~~~~g~v 605 (857)
T PLN03077 531 LDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVES----GVNP-DEVTFISLLCACSRSGMV 605 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CcccHHHHHHHHhhcChH
Confidence 0111122333333333222 234666666667777777777777665432 1222 234455555667777777
Q ss_pred HHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000742 397 NKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQE 445 (1313)
Q Consensus 397 ~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~k 445 (1313)
++|..+|+...+... .......|..+..+|.+.|++++|.+.+++
T Consensus 606 ~ea~~~f~~M~~~~g----i~P~~~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 606 TQGLEYFHSMEEKYS----ITPNLKHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred HHHHHHHHHHHHHhC----CCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 777777776653221 112335566677777777777777776665
No 100
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.41 E-value=2.5e-12 Score=144.99 Aligned_cols=231 Identities=17% Similarity=0.161 Sum_probs=181.2
Q ss_pred chhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccC
Q 000742 4 DEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEH 83 (1313)
Q Consensus 4 ~~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 83 (1313)
..|++.+|.-+|+.|++.+|...+| |..||.+....++-..|+..+++++++.+.. ..++..||..|...|.
T Consensus 297 ~nG~L~~A~LafEAAVkqdP~haeA--W~~LG~~qaENE~E~~ai~AL~rcl~LdP~N------leaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQDPQHAEA--WQKLGITQAENENEQNAISALRRCLELDPTN------LEALMALAVSYTNEGL 368 (579)
T ss_pred hcCCchHHHHHHHHHHhhChHHHHH--HHHhhhHhhhccchHHHHHHHHHHHhcCCcc------HHHHHHHHHHHhhhhh
Confidence 3577999999999999999998777 9999999999999999999999999987443 8899999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-hc--cCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcch
Q 000742 84 FKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEM-FL--RSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSS 160 (1313)
Q Consensus 84 ~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l-~~--~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~ 160 (1313)
-.+|++++ .+-+...+..... ....... +. ++-.+...+..-.++|-.|... ....
T Consensus 369 q~~Al~~L-~~Wi~~~p~y~~l----------~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~---~~~~------- 427 (579)
T KOG1125|consen 369 QNQALKML-DKWIRNKPKYVHL----------VSAGENEDFENTKSFLDSSHLAHIQELFLEAARQ---LPTK------- 427 (579)
T ss_pred HHHHHHHH-HHHHHhCccchhc----------cccCccccccCCcCCCCHHHHHHHHHHHHHHHHh---CCCC-------
Confidence 99999999 8887765443110 0000000 00 0001112233334444444333 2211
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742 161 FLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICK 240 (1313)
Q Consensus 161 ~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~ 240 (1313)
..+.++..||.+|+..|+|++|++.|+.||.. .|.....|..||-++..-.+.++|+..|++|+++.|
T Consensus 428 ---~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v---------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP 495 (579)
T KOG1125|consen 428 ---IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV---------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQP 495 (579)
T ss_pred ---CChhHHhhhHHHHhcchHHHHHHHHHHHHHhc---------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCC
Confidence 22578999999999999999999999999987 555788999999999999999999999999999976
Q ss_pred HhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 000742 241 KIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQS 281 (1313)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~ 281 (1313)
...++.++||..+..+|.|++|.++|-.|+.+.+.
T Consensus 496 ------~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 496 ------GYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred ------CeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 89999999999999999999999999999998876
No 101
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.41 E-value=4.8e-11 Score=141.82 Aligned_cols=309 Identities=10% Similarity=0.018 Sum_probs=216.6
Q ss_pred chhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccC
Q 000742 4 DEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEH 83 (1313)
Q Consensus 4 ~~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 83 (1313)
..|+++.|.+.+.++.+..|.+... +...|.++..+|++++|.+++.++.+..+ ... ..+....+.++...|+
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~--~llaA~aa~~~g~~~~A~~~l~~a~~~~p----~~~-l~~~~~~a~l~l~~~~ 168 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLN--LIKAAEAAQQRGDEARANQHLEEAAELAG----NDN-ILVEIARTRILLAQNE 168 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHhCC----cCc-hHHHHHHHHHHHHCCC
Confidence 4689999999999999888876666 67889999999999999999999976542 121 2344456999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhH
Q 000742 84 FKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLK 163 (1313)
Q Consensus 84 ~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p 163 (1313)
+++|...+ ++.++..|+.. .++..++.+|... |++++|.+.+.+..+... .. .+
T Consensus 169 ~~~Al~~l-~~l~~~~P~~~------~~l~ll~~~~~~~--------~d~~~a~~~l~~l~k~~~----~~-------~~ 222 (409)
T TIGR00540 169 LHAARHGV-DKLLEMAPRHK------EVLKLAEEAYIRS--------GAWQALDDIIDNMAKAGL----FD-------DE 222 (409)
T ss_pred HHHHHHHH-HHHHHhCCCCH------HHHHHHHHHHHHH--------hhHHHHHHHHHHHHHcCC----CC-------HH
Confidence 99999999 99999887664 4678899999988 999999999888876510 00 11
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000742 164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIE 243 (1313)
Q Consensus 164 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~ 243 (1313)
...........-+...+..+++.+.+.++.+..++ ..+....++..+|..+...|++++|.+.++++++..+...
T Consensus 223 ~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~-----~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~ 297 (409)
T TIGR00540 223 EFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPR-----HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDR 297 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCH-----HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcc
Confidence 22222222222334445555566677777665432 1223567889999999999999999999999999876321
Q ss_pred hhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742 244 HCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNM 323 (1313)
Q Consensus 244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l 323 (1313)
. .. ............++.+.+++.++++++..|...+.. +
T Consensus 298 ~---~~-~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~-----l------------------------------- 337 (409)
T TIGR00540 298 A---IS-LPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCC-----I------------------------------- 337 (409)
T ss_pred c---ch-hHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHH-----H-------------------------------
Confidence 1 00 011222233445788889999998888776544100 1
Q ss_pred HHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHH
Q 000742 324 IIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWY 403 (1313)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~ 403 (1313)
+..+|..+...++|++|.++++++..+.. .|. ...+..+|.++.+.|+.++|.++|
T Consensus 338 -------------------l~sLg~l~~~~~~~~~A~~~le~a~a~~~----~p~-~~~~~~La~ll~~~g~~~~A~~~~ 393 (409)
T TIGR00540 338 -------------------NRALGQLLMKHGEFIEAADAFKNVAACKE----QLD-ANDLAMAADAFDQAGDKAEAAAMR 393 (409)
T ss_pred -------------------HHHHHHHHHHcccHHHHHHHHHHhHHhhc----CCC-HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33455556667777777787775433321 222 234568999999999999999999
Q ss_pred HHHHHHHHHhC
Q 000742 404 TKSWEMYKSIG 414 (1313)
Q Consensus 404 ~kal~l~~~~~ 414 (1313)
++++...-.++
T Consensus 394 ~~~l~~~~~~~ 404 (409)
T TIGR00540 394 QDSLGLMLAIQ 404 (409)
T ss_pred HHHHHHHhccc
Confidence 99987765443
No 102
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.5e-10 Score=124.52 Aligned_cols=300 Identities=13% Similarity=0.047 Sum_probs=206.2
Q ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhc
Q 000742 72 QSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLK 151 (1313)
Q Consensus 72 ~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~ 151 (1313)
+..+.++...++...|...+ - .++......+. ...+..+|.+|+.. |++++|+..|+++.-+
T Consensus 200 wika~Aq~~~~~hs~a~~t~-l-~le~~~~lr~N---vhLl~~lak~~~~~--------Gdn~~a~~~Fe~~~~~----- 261 (564)
T KOG1174|consen 200 WIKALAQMFNFKHSDASQTF-L-MLHDNTTLRCN---EHLMMALGKCLYYN--------GDYFQAEDIFSSTLCA----- 261 (564)
T ss_pred HHHHHHHHHhcccchhhhHH-H-HHHhhccCCcc---HHHHHHHhhhhhhh--------cCchHHHHHHHHHhhC-----
Confidence 33444444455555554443 1 12222222222 23467788888877 9999999999988766
Q ss_pred cCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHH
Q 000742 152 ENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREH 231 (1313)
Q Consensus 152 ~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~ 231 (1313)
.|......-..|..+...|++++-.......+.+.+. .+.-|+--|.+.+..+++..|+.+
T Consensus 262 ----------dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~---------ta~~wfV~~~~l~~~K~~~rAL~~ 322 (564)
T KOG1174|consen 262 ----------NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKY---------TASHWFVHAQLLYDEKKFERALNF 322 (564)
T ss_pred ----------ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhc---------chhhhhhhhhhhhhhhhHHHHHHH
Confidence 5677778888888888999998887777777666322 344566667778888999999999
Q ss_pred HHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000742 232 IEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKK 311 (1313)
Q Consensus 232 ~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~ 311 (1313)
-+|+|...+ ....+|...|.++...+++++|+-.|+.|..+.|..-+.+..+...|...+.+.+|+-.-..+..
T Consensus 323 ~eK~I~~~~------r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~ 396 (564)
T KOG1174|consen 323 VEKCIDSEP------RNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR 396 (564)
T ss_pred HHHHhccCc------ccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence 999998866 67788999999999999999999999999998876544333333333333444433333322222
Q ss_pred HHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHH
Q 000742 312 EEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLI-EKS-SMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGES 389 (1313)
Q Consensus 312 ~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~-~~~-~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~ 389 (1313)
..++. +.++.-+| ... ....--++|.+++++++.+ .|....+-..+|..
T Consensus 397 ~~~~s-----------------------A~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~------~P~Y~~AV~~~AEL 447 (564)
T KOG1174|consen 397 LFQNS-----------------------ARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI------NPIYTPAVNLIAEL 447 (564)
T ss_pred Hhhcc-----------------------hhhhhhhcceeeccCchhHHHHHHHHHhhhcc------CCccHHHHHHHHHH
Confidence 11111 11122222 111 1112235677777777654 46666888899999
Q ss_pred HHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000742 390 YQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIA 450 (1313)
Q Consensus 390 y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~ 450 (1313)
+...|.++.++..+++++..++ +...+..+|.++...+.+++|+.+|..|+.+.
T Consensus 448 ~~~Eg~~~D~i~LLe~~L~~~~-------D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 448 CQVEGPTKDIIKLLEKHLIIFP-------DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHhhCccchHHHHHHHHHhhcc-------ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 9999999999999999998764 34568899999999999999999999999874
No 103
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.40 E-value=7.8e-12 Score=141.10 Aligned_cols=270 Identities=16% Similarity=0.125 Sum_probs=195.5
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 000742 32 NVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRA 111 (1313)
Q Consensus 32 ~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a 111 (1313)
+..|..+++.|+..+|.-.|+.|+...|++ +++|..||.++...++-..|+..+ ++++++.|++. .+
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~h------aeAW~~LG~~qaENE~E~~ai~AL-~rcl~LdP~Nl------ea 355 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQH------AEAWQKLGITQAENENEQNAISAL-RRCLELDPTNL------EA 355 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHH------HHHHHHhhhHhhhccchHHHHHHH-HHHHhcCCccH------HH
Confidence 467889999999999999999999887655 999999999999999999999999 99999988764 57
Q ss_pred HHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000742 112 CTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIR 191 (1313)
Q Consensus 112 ~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~ 191 (1313)
+..||..|... |.-.+|.+++.+-+..-.+.......... .... ...-......+..-.++|..
T Consensus 356 LmaLAVSytNe--------g~q~~Al~~L~~Wi~~~p~y~~l~~a~~~----~~~~----~~~s~~~~~~l~~i~~~fLe 419 (579)
T KOG1125|consen 356 LMALAVSYTNE--------GLQNQALKMLDKWIRNKPKYVHLVSAGEN----EDFE----NTKSFLDSSHLAHIQELFLE 419 (579)
T ss_pred HHHHHHHHhhh--------hhHHHHHHHHHHHHHhCccchhccccCcc----cccc----CCcCCCCHHHHHHHHHHHHH
Confidence 89999999977 88889999998887653221110000000 0000 00000000112223334444
Q ss_pred HHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHH
Q 000742 192 GLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILC 271 (1313)
Q Consensus 192 al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 271 (1313)
|....+ ....+.++..||.+|...|+|++|+.+|+.|+...| .....|+.||..+..-.+.++|+..
T Consensus 420 aa~~~~-------~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~P------nd~~lWNRLGAtLAN~~~s~EAIsA 486 (579)
T KOG1125|consen 420 AARQLP-------TKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKP------NDYLLWNRLGATLANGNRSEEAISA 486 (579)
T ss_pred HHHhCC-------CCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCC------chHHHHHHhhHHhcCCcccHHHHHH
Confidence 433311 123467889999999999999999999999999866 8889999999999999999999999
Q ss_pred HHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHH
Q 000742 272 YQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSS 351 (1313)
Q Consensus 272 ~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~ 351 (1313)
|.+|+++.|.+.
T Consensus 487 Y~rALqLqP~yV-------------------------------------------------------------------- 498 (579)
T KOG1125|consen 487 YNRALQLQPGYV-------------------------------------------------------------------- 498 (579)
T ss_pred HHHHHhcCCCee--------------------------------------------------------------------
Confidence 999999887543
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhH----HHHHHHHH
Q 000742 352 MIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQ----ALAKVNMG 427 (1313)
Q Consensus 352 ~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~----~~~~~~lg 427 (1313)
++.++||..|+.+|.|++|+++|-.||.+.+........ ..+|-.|=
T Consensus 499 -----------------------------R~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR 549 (579)
T KOG1125|consen 499 -----------------------------RVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLR 549 (579)
T ss_pred -----------------------------eeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHH
Confidence 456678889999999999999999999888764332211 23455554
Q ss_pred HHHHHcCCHHHHH
Q 000742 428 NVLDSNGDWAGAL 440 (1313)
Q Consensus 428 ~~y~~~g~~~~A~ 440 (1313)
.++..+++.+-+.
T Consensus 550 ~als~~~~~D~l~ 562 (579)
T KOG1125|consen 550 LALSAMNRSDLLQ 562 (579)
T ss_pred HHHHHcCCchHHH
Confidence 5555556555433
No 104
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.40 E-value=3.6e-10 Score=131.51 Aligned_cols=379 Identities=11% Similarity=0.012 Sum_probs=270.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHH
Q 000742 28 ARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVE 107 (1313)
Q Consensus 28 a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~ 107 (1313)
+.+|-.+.......|+|+.+.+.|++++...-. ..+.|+.++.+|...|.-..|+... ++.+...+...+..
T Consensus 323 ~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~------~~e~w~~~als~saag~~s~Av~ll-~~~~~~~~~ps~~s- 394 (799)
T KOG4162|consen 323 AAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG------EHERWYQLALSYSAAGSDSKAVNLL-RESLKKSEQPSDIS- 394 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh------hHHHHHHHHHHHHHhccchHHHHHH-HhhcccccCCCcch-
Confidence 445778888999999999999999999877632 3688999999999999999999999 99888876554443
Q ss_pred HHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcC-------
Q 000742 108 QQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELD------- 180 (1313)
Q Consensus 108 ~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g------- 180 (1313)
.+...+.++... .+.++++++|..+|+..+....+. ..+.+|..+|.+|..+-
T Consensus 395 ---~~Lmasklc~e~-------l~~~eegldYA~kai~~~~~~~~~----------l~~~~~l~lGi~y~~~A~~a~~~s 454 (799)
T KOG4162|consen 395 ---VLLMASKLCIER-------LKLVEEGLDYAQKAISLLGGQRSH----------LKPRGYLFLGIAYGFQARQANLKS 454 (799)
T ss_pred ---HHHHHHHHHHhc-------hhhhhhHHHHHHHHHHHhhhhhhh----------hhhhHHHHHHHHHHhHhhcCCChH
Confidence 344444444432 288999999999999977443322 34677888888775432
Q ss_pred ----CHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHH
Q 000742 181 ----NLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLG 256 (1313)
Q Consensus 181 ----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la 256 (1313)
...++++.+++|++.. +....+.++++.-|..+++.+.|..+.++++++.+ .+.+.+|..+|
T Consensus 455 eR~~~h~kslqale~av~~d---------~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~-----~~~~~~whLLA 520 (799)
T KOG4162|consen 455 ERDALHKKSLQALEEAVQFD---------PTDPLVIFYLALQYAEQRQLTSALDYAREALALNR-----GDSAKAWHLLA 520 (799)
T ss_pred HHHHHHHHHHHHHHHHHhcC---------CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC-----CccHHHHHHHH
Confidence 3466777788887763 22347889999999999999999999999999955 37889999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHH
Q 000742 257 ELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYL 336 (1313)
Q Consensus 257 ~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~ 336 (1313)
.++...+++.+|+.....+++-.++..........+-..+++..+++.-.......|++.....+....
T Consensus 521 LvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~----------- 589 (799)
T KOG4162|consen 521 LVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDE----------- 589 (799)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhh-----------
Confidence 999999999999999999999888754443333344455677777777777777666655444433321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------CC--chhhHHHHHHHHHHHHHhhCH
Q 000742 337 LQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASEL------------------CD--KGKLSDSFLVIGESYQKLRKF 396 (1313)
Q Consensus 337 ~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~------------------~~--~~~~a~~~~~lg~~y~~~g~~ 396 (1313)
+..+..-+.......+..+|.+.+.++..+...- .+ ....-..+...|..+...++.
T Consensus 590 ---g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~ 666 (799)
T KOG4162|consen 590 ---GKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGND 666 (799)
T ss_pred ---hhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCc
Confidence 1111111111112222233333333332222110 00 011245677789999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhHHHHHHhh
Q 000742 397 NKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMIRF 474 (1313)
Q Consensus 397 ~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~~~~~~al~~L~~~~~~~~ 474 (1313)
++|..++.+|-.+.+ ..+..|+..|..+...|++++|.+.|..|+.+. +++ ..+...+|.++...|
T Consensus 667 ~~a~~CL~Ea~~~~~------l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld--P~h----v~s~~Ala~~lle~G 732 (799)
T KOG4162|consen 667 DEARSCLLEASKIDP------LSASVYYLRGLLLEVKGQLEEAKEAFLVALALD--PDH----VPSMTALAELLLELG 732 (799)
T ss_pred hHHHHHHHHHHhcch------hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC--CCC----cHHHHHHHHHHHHhC
Confidence 999999999998764 667889999999999999999999999999885 333 346667787777655
No 105
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.39 E-value=8.6e-13 Score=142.90 Aligned_cols=299 Identities=20% Similarity=0.226 Sum_probs=223.1
Q ss_pred CeEEecCCCCCcCCHHHHHHHhhcCCCcCEEEecCCC-CCHHHHHHHHHHHHhcccCccceEEEccCC-CCCHHHHHHHH
Q 000742 833 DEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNL-LGNGTMEKLQQFFISSCQNYVDLTLDLHCN-RFGPTTLFQIC 910 (1313)
Q Consensus 833 ~~l~l~~~~l~~~~~~~l~~~L~~~~~L~~L~Ls~n~-l~~~~~~~L~~~l~~~~~~~~l~~L~Ls~n-~l~~~~~~~l~ 910 (1313)
++|++.+|. +....++-.+...+|+++.|++.++. |++..+..+++. ...+..|+|..| .|++..+..++
T Consensus 141 k~LSlrG~r--~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~------C~~l~~l~L~~c~~iT~~~Lk~la 212 (483)
T KOG4341|consen 141 KELSLRGCR--AVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARY------CRKLRHLNLHSCSSITDVSLKYLA 212 (483)
T ss_pred ccccccccc--cCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHh------cchhhhhhhcccchhHHHHHHHHH
Confidence 557888874 34445566666788999999999987 899888888873 456788888874 67888888888
Q ss_pred hcccCCCCcCEEEecCC-CCChhHHHHHHHHHhcCCCCcEEEeecC-CCCHHHHHHHHHHHhcCCCccEEEeCCCCCCCh
Q 000742 911 ECPVLFTRLGVLNLSGN-RLTDACGSYLSTILKNCKVLYSLNIENC-SITSRTIQKVADALGAESTLAQLCIGYNSPVTG 988 (1313)
Q Consensus 911 ~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 988 (1313)
+. |++|++|++|.+ .|++.|++.+. ..++.++.+.+.+| .++.+. +..+=..+.-+..+++.++..+++
T Consensus 213 ~g---C~kL~~lNlSwc~qi~~~gv~~~~---rG~~~l~~~~~kGC~e~~le~---l~~~~~~~~~i~~lnl~~c~~lTD 283 (483)
T KOG4341|consen 213 EG---CRKLKYLNLSWCPQISGNGVQALQ---RGCKELEKLSLKGCLELELEA---LLKAAAYCLEILKLNLQHCNQLTD 283 (483)
T ss_pred Hh---hhhHHHhhhccCchhhcCcchHHh---ccchhhhhhhhcccccccHHH---HHHHhccChHhhccchhhhccccc
Confidence 76 799999999998 67887766554 45667888888877 344433 333335677788888888888888
Q ss_pred hhHHHHHHhhccCCccceeecCCCC-CChHHHHHHHHHhhcCCccEEEccCCC-CCCchHHHHHHHHhcCCCcccEEEcc
Q 000742 989 NAITNLLVKLDTLKSFSELNLNGLK-LSKPVVDRLCQLAKTSCLTHLMLGCTN-LGSDGSLQLVESLFSRAQESVKLDLS 1066 (1313)
Q Consensus 989 ~~~~~~~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~Ls 1066 (1313)
.++..+.. .+..|+.|..+++. +++.....++. .+++|+.|-|+++. +++.|+..++ .++..|+.|++.
T Consensus 284 ~~~~~i~~---~c~~lq~l~~s~~t~~~d~~l~aLg~--~~~~L~~l~l~~c~~fsd~~ft~l~----rn~~~Le~l~~e 354 (483)
T KOG4341|consen 284 EDLWLIAC---GCHALQVLCYSSCTDITDEVLWALGQ--HCHNLQVLELSGCQQFSDRGFTMLG----RNCPHLERLDLE 354 (483)
T ss_pred hHHHHHhh---hhhHhhhhcccCCCCCchHHHHHHhc--CCCceEEEeccccchhhhhhhhhhh----cCChhhhhhccc
Confidence 88666554 67789999998876 44444444432 35789999999986 8888876654 667789999999
Q ss_pred CCCCChhHHHHHHHHHhcCCCccEEEccCCC-CChHHHHHHHHHhcCCCCceeEEEeecCCCCHHHHHHHHHHhhcCCCc
Q 000742 1067 YCGLESTCIHKFTASVSLVHGILELNLGGNP-IMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTL 1145 (1313)
Q Consensus 1067 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L 1145 (1313)
.|.+...+ .+...-.+++.|+.|.|+++. |+|+|...+...-.. ...|+.|.|++|..+.+ ...+.+..|++|
T Consensus 355 ~~~~~~d~--tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~-~~~l~~lEL~n~p~i~d---~~Le~l~~c~~L 428 (483)
T KOG4341|consen 355 ECGLITDG--TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCS-LEGLEVLELDNCPLITD---ATLEHLSICRNL 428 (483)
T ss_pred ccceehhh--hHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccc-ccccceeeecCCCCchH---HHHHHHhhCccc
Confidence 99976654 344444579999999999997 889988887764332 23599999999987655 356678899999
Q ss_pred cEEEccCCC-CChhhhhhh
Q 000742 1146 EELNLADNA-SKELTLQQN 1163 (1313)
Q Consensus 1146 ~~L~Ls~N~-i~~~~~~~~ 1163 (1313)
+.++|-+.. ++..++.-+
T Consensus 429 eri~l~~~q~vtk~~i~~~ 447 (483)
T KOG4341|consen 429 ERIELIDCQDVTKEAISRF 447 (483)
T ss_pred ceeeeechhhhhhhhhHHH
Confidence 999998874 666655543
No 106
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.38 E-value=3.5e-10 Score=133.97 Aligned_cols=388 Identities=12% Similarity=0.016 Sum_probs=263.9
Q ss_pred hhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChH
Q 000742 6 MQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFK 85 (1313)
Q Consensus 6 ~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~ 85 (1313)
+....|...|-++++.++....+ +..+|.+|...-+...|.+.|++|.++.. ..+.+.-..+..|.+..+++
T Consensus 472 K~~~~al~ali~alrld~~~apa--f~~LG~iYrd~~Dm~RA~kCf~KAFeLDa------tdaeaaaa~adtyae~~~we 543 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPA--FAFLGQIYRDSDDMKRAKKCFDKAFELDA------TDAEAAAASADTYAEESTWE 543 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCc------hhhhhHHHHHHHhhccccHH
Confidence 44677888888888888886666 77899999988899999999999988763 33777778899999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHH
Q 000742 86 DALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEY 165 (1313)
Q Consensus 86 ~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~ 165 (1313)
+|.... -.+-+.++... ....|..+|..|..- ++...|+..|+.|+.. .|..
T Consensus 544 ~a~~I~-l~~~qka~a~~----~k~nW~~rG~yyLea--------~n~h~aV~~fQsALR~---------------dPkD 595 (1238)
T KOG1127|consen 544 EAFEIC-LRAAQKAPAFA----CKENWVQRGPYYLEA--------HNLHGAVCEFQSALRT---------------DPKD 595 (1238)
T ss_pred HHHHHH-HHHhhhchHHH----HHhhhhhccccccCc--------cchhhHHHHHHHHhcC---------------Cchh
Confidence 998877 66555544332 123455678877755 8899999999999987 5677
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-ch
Q 000742 166 IDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKI-EH 244 (1313)
Q Consensus 166 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~-~~ 244 (1313)
...|..+|.+|...|.|..|++.|.+|..+ +|......+..+.+...+|+|.+|+..+...+...... ..
T Consensus 596 ~n~W~gLGeAY~~sGry~~AlKvF~kAs~L---------rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~ 666 (1238)
T KOG1127|consen 596 YNLWLGLGEAYPESGRYSHALKVFTKASLL---------RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTG 666 (1238)
T ss_pred HHHHHHHHHHHHhcCceehHHHhhhhhHhc---------CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 889999999999999999999999999888 45566777888999999999999999999888776532 33
Q ss_pred hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChh-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742 245 CQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDED-ALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNM 323 (1313)
Q Consensus 245 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~-~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l 323 (1313)
..+.+.++..++..+...|=+.+|..+++++++...-.-... ......+.-+|+.....-..+--.-..--...+..++
T Consensus 667 q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~ 746 (1238)
T KOG1127|consen 667 QNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQL 746 (1238)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 456778888888888888989999999999888764322111 0111122223332221111110000000000000000
Q ss_pred HHh-hCCchH-----------HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhCCchhhHHHH
Q 000742 324 IIA-KGTSQE-----------RKYLLQQNASLDRLIEKSSM--------IFAWLKHCEYAKRKKRIASELCDKGKLSDSF 383 (1313)
Q Consensus 324 ~~~-~~~~~~-----------a~~~~~~~~~l~~L~~~~~~--------~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~ 383 (1313)
... .....+ ...+......+-++|..|.. +.+-..|+..+++++.+.... ...+
T Consensus 747 e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann------~~~W 820 (1238)
T KOG1127|consen 747 EKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANN------EGLW 820 (1238)
T ss_pred HhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhcc------HHHH
Confidence 000 000000 00111112233444444322 233356777888877765432 3777
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742 384 LVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAV 451 (1313)
Q Consensus 384 ~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~ 451 (1313)
..||.+ ...|++.-|...|-+++...+ ....+|.++|.++.+..+++-|...|.++..+..
T Consensus 821 naLGVl-sg~gnva~aQHCfIks~~sep------~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP 881 (1238)
T KOG1127|consen 821 NALGVL-SGIGNVACAQHCFIKSRFSEP------TCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDP 881 (1238)
T ss_pred HHHHHh-hccchhhhhhhhhhhhhhccc------cchhheeccceeEEecccHHHhhHHHHhhhhcCc
Confidence 888887 666899999999999886654 4456799999999999999999999999887753
No 107
>PLN03077 Protein ECB2; Provisional
Probab=99.37 E-value=2.6e-10 Score=149.72 Aligned_cols=404 Identities=12% Similarity=-0.034 Sum_probs=288.5
Q ss_pred hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccCh
Q 000742 5 EMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHF 84 (1313)
Q Consensus 5 ~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~ 84 (1313)
.|++++|.+.|+...+. ....|+.+-..|.+.|++++|++.|.+..+.. ......+|..+...+...|+.
T Consensus 235 ~g~~~~A~~lf~~m~~~-----d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g-----~~Pd~~ty~~ll~a~~~~g~~ 304 (857)
T PLN03077 235 CGDVVSARLVFDRMPRR-----DCISWNAMISGYFENGECLEGLELFFTMRELS-----VDPDLMTITSVISACELLGDE 304 (857)
T ss_pred CCCHHHHHHHHhcCCCC-----CcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC-----CCCChhHHHHHHHHHHhcCCh
Confidence 47889999999887532 22348889999999999999999999987542 122256778888888999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHH
Q 000742 85 KDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKE 164 (1313)
Q Consensus 85 ~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~ 164 (1313)
+.|.+.+ ..+.+..-. ++ ..+|..+...|... |++++|.+.|++.. .+.
T Consensus 305 ~~a~~l~-~~~~~~g~~-~d----~~~~n~Li~~y~k~--------g~~~~A~~vf~~m~-------~~d---------- 353 (857)
T PLN03077 305 RLGREMH-GYVVKTGFA-VD----VSVCNSLIQMYLSL--------GSWGEAEKVFSRME-------TKD---------- 353 (857)
T ss_pred HHHHHHH-HHHHHhCCc-cc----hHHHHHHHHHHHhc--------CCHHHHHHHHhhCC-------CCC----------
Confidence 9999999 777664322 12 35688889999877 99999999888743 111
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhch
Q 000742 165 YIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEH 244 (1313)
Q Consensus 165 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~ 244 (1313)
..+|+.+...|.+.|++++|++.|++..+. +-.|. ...+..+-..+...|++++|.+.++.+.+..-
T Consensus 354 -~~s~n~li~~~~~~g~~~~A~~lf~~M~~~-------g~~Pd-~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~---- 420 (857)
T PLN03077 354 -AVSWTAMISGYEKNGLPDKALETYALMEQD-------NVSPD-EITIASVLSACACLGDLDVGVKLHELAERKGL---- 420 (857)
T ss_pred -eeeHHHHHHHHHhCCCHHHHHHHHHHHHHh-------CCCCC-ceeHHHHHHHHhccchHHHHHHHHHHHHHhCC----
Confidence 347899999999999999999999987654 11222 23555666688999999999999998876532
Q ss_pred hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHH
Q 000742 245 CQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQ----NLKKLT 320 (1313)
Q Consensus 245 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~----~~~~l~ 320 (1313)
.....++..+...|.+.|++++|.+.|++..+ .....+..+...|...|...+|+..|++.....+ .+..+.
T Consensus 421 -~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL 496 (857)
T PLN03077 421 -ISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAAL 496 (857)
T ss_pred -CcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHH
Confidence 24567888999999999999999999987543 2223455556678888899999999998763211 111111
Q ss_pred HHHHHhhCCchHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHH
Q 000742 321 RNMIIAKGTSQERKYLLQQN---------ASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQ 391 (1313)
Q Consensus 321 ~~l~~~~~~~~~a~~~~~~~---------~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~ 391 (1313)
... ...+..+.++.+.... ...+.+...|...|++++|.+.+++. .....+|..+...|.
T Consensus 497 ~a~-~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----------~~d~~s~n~lI~~~~ 565 (857)
T PLN03077 497 SAC-ARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----------EKDVVSWNILLTGYV 565 (857)
T ss_pred HHH-hhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----------CCChhhHHHHHHHHH
Confidence 111 1123333333333322 23356778888889999998777653 335588999999999
Q ss_pred HhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhHHHHH
Q 000742 392 KLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHM 471 (1313)
Q Consensus 392 ~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~~~~~~al~~L~~~~~ 471 (1313)
+.|+.++|+..|++..+. + ......++..+-.+|.+.|++++|.++|++..+.. +..+ ....|..|...+.
T Consensus 566 ~~G~~~~A~~lf~~M~~~----g-~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~---gi~P-~~~~y~~lv~~l~ 636 (857)
T PLN03077 566 AHGKGSMAVELFNRMVES----G-VNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKY---SITP-NLKHYACVVDLLG 636 (857)
T ss_pred HcCCHHHHHHHHHHHHHc----C-CCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHh---CCCC-chHHHHHHHHHHH
Confidence 999999999999997742 2 22334557777788999999999999999876432 2111 2246666666554
Q ss_pred HhhcCHHHHHHHHHHH
Q 000742 472 IRFDNIEEARRLQHEI 487 (1313)
Q Consensus 472 ~~~~~~~~a~~~~e~~ 487 (1313)
+.+..++|.++.+.+
T Consensus 637 -r~G~~~eA~~~~~~m 651 (857)
T PLN03077 637 -RAGKLTEAYNFINKM 651 (857)
T ss_pred -hCCCHHHHHHHHHHC
Confidence 456677777777765
No 108
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.37 E-value=1.6e-09 Score=122.93 Aligned_cols=244 Identities=13% Similarity=0.070 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhh
Q 000742 168 AHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQG 247 (1313)
Q Consensus 168 ~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~ 247 (1313)
.+...+..+...|+...|...+.+|.+..+ ..-.+|+.--.+.....+++.|..+|.+|... ..
T Consensus 586 lwlM~ake~w~agdv~~ar~il~~af~~~p---------nseeiwlaavKle~en~e~eraR~llakar~~-------sg 649 (913)
T KOG0495|consen 586 LWLMYAKEKWKAGDVPAARVILDQAFEANP---------NSEEIWLAAVKLEFENDELERARDLLAKARSI-------SG 649 (913)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHhCC---------CcHHHHHHHHHHhhccccHHHHHHHHHHHhcc-------CC
Confidence 444444455555555555555555554421 12334444444445555555555555555443 23
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000742 248 EAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAK 327 (1313)
Q Consensus 248 ~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~ 327 (1313)
..++|+.-+.+...+++.++|++.++++++.+|.....+.+.++++..++++..|..-|....+..+....+
T Consensus 650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipL-------- 721 (913)
T KOG0495|consen 650 TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPL-------- 721 (913)
T ss_pred cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchH--------
Confidence 456666666667777777777777777777776666555555555555555555555554443333222111
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 000742 328 GTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSW 407 (1313)
Q Consensus 328 ~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal 407 (1313)
+-.|+......++.-+|...++++. -..|..+..|...-.+-.+.|+.++|.....+|+
T Consensus 722 ---------------WllLakleEk~~~~~rAR~ildrar------lkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakAL 780 (913)
T KOG0495|consen 722 ---------------WLLLAKLEEKDGQLVRARSILDRAR------LKNPKNALLWLESIRMELRAGNKEQAELLMAKAL 780 (913)
T ss_pred ---------------HHHHHHHHHHhcchhhHHHHHHHHH------hcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1122222223333444444444332 2346666777777788888899999998888888
Q ss_pred HHHHHhCC------------------------chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh
Q 000742 408 EMYKSIGN------------------------LEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLP 456 (1313)
Q Consensus 408 ~l~~~~~~------------------------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~ 456 (1313)
+-++..+- ......++..+|..+....++++|.+.|++|+++..+.|+.
T Consensus 781 Qecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~ 853 (913)
T KOG0495|consen 781 QECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDA 853 (913)
T ss_pred HhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchH
Confidence 86653321 12445678889999999999999999999999987776653
No 109
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.37 E-value=9.1e-13 Score=142.74 Aligned_cols=283 Identities=19% Similarity=0.268 Sum_probs=200.9
Q ss_pred CCCcCEEEecCC-CCChhHHHHHHHHHhcCCCCcEEEeecC-CCCHHHHHHHHHHHhcCCCccEEEeCCCCCCChhhHHH
Q 000742 916 FTRLGVLNLSGN-RLTDACGSYLSTILKNCKVLYSLNIENC-SITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITN 993 (1313)
Q Consensus 916 ~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~~ 993 (1313)
++++++|++.++ .|++.....++ ..|+.|+.|+|..| .||+..++.++ ..+++|++|++|+++.++++++..
T Consensus 163 CpnIehL~l~gc~~iTd~s~~sla---~~C~~l~~l~L~~c~~iT~~~Lk~la---~gC~kL~~lNlSwc~qi~~~gv~~ 236 (483)
T KOG4341|consen 163 CPNIEHLALYGCKKITDSSLLSLA---RYCRKLRHLNLHSCSSITDVSLKYLA---EGCRKLKYLNLSWCPQISGNGVQA 236 (483)
T ss_pred CCchhhhhhhcceeccHHHHHHHH---HhcchhhhhhhcccchhHHHHHHHHH---HhhhhHHHhhhccCchhhcCcchH
Confidence 688888888887 67777443333 46888889999885 67877666665 457889999999998877777666
Q ss_pred HHHhhccCCccceeecCCCCCChHHHHHHHHHh-hcCCccEEEccC-CCCCCchHHHHHHHHhcCCCcccEEEccCCC-C
Q 000742 994 LLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLA-KTSCLTHLMLGC-TNLGSDGSLQLVESLFSRAQESVKLDLSYCG-L 1070 (1313)
Q Consensus 994 ~~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~l~-~~~~L~~L~Ls~-n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l 1070 (1313)
+.. ++..|+.+.+.+|. +...+.+..+. .+.-+..+++.. +.++|.++..++. .+..|+.|+.++|. +
T Consensus 237 ~~r---G~~~l~~~~~kGC~--e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~----~c~~lq~l~~s~~t~~ 307 (483)
T KOG4341|consen 237 LQR---GCKELEKLSLKGCL--ELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIAC----GCHALQVLCYSSCTDI 307 (483)
T ss_pred Hhc---cchhhhhhhhcccc--cccHHHHHHHhccChHhhccchhhhccccchHHHHHhh----hhhHhhhhcccCCCCC
Confidence 655 55567777777764 22233333222 234466777655 4588888766653 34579999998886 6
Q ss_pred ChhHHHHHHHHHhcCCCccEEEccCCC-CChHHHHHHHHHhcCCCCceeEEEeecCCCCHHHHHHHHHHhhcCCCccEEE
Q 000742 1071 ESTCIHKFTASVSLVHGILELNLGGNP-IMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELN 1149 (1313)
Q Consensus 1071 ~~~~~~~l~~~l~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~ 1149 (1313)
++.....+. .++.+|+.|-|+.+. +++.|...++.... .|+.|++..|..+.++ .+.+.-.+++.|+.|.
T Consensus 308 ~d~~l~aLg---~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~----~Le~l~~e~~~~~~d~--tL~sls~~C~~lr~ls 378 (483)
T KOG4341|consen 308 TDEVLWALG---QHCHNLQVLELSGCQQFSDRGFTMLGRNCP----HLERLDLEECGLITDG--TLASLSRNCPRLRVLS 378 (483)
T ss_pred chHHHHHHh---cCCCceEEEeccccchhhhhhhhhhhcCCh----hhhhhcccccceehhh--hHhhhccCCchhccCC
Confidence 666554443 468899999999998 99998888877533 5999999999877665 4555557889999999
Q ss_pred ccCC-CCChhhhhhhcccccccCCcccccccccccccccccccccccccCCCCcccccccCCccchhhhccccCCCCccc
Q 000742 1150 LADN-ASKELTLQQNLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIRVESAASGFDNSCTS 1228 (1313)
Q Consensus 1150 Ls~N-~i~~~~~~~~l~~l~~~~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~ 1228 (1313)
|+++ .|++.|+..+ . .....+..|+++.|++++.+.
T Consensus 379 lshce~itD~gi~~l-~-----------------------------~~~c~~~~l~~lEL~n~p~i~------------- 415 (483)
T KOG4341|consen 379 LSHCELITDEGIRHL-S-----------------------------SSSCSLEGLEVLELDNCPLIT------------- 415 (483)
T ss_pred hhhhhhhhhhhhhhh-h-----------------------------hccccccccceeeecCCCCch-------------
Confidence 9988 4788877766 1 122445677777777777632
Q ss_pred ccccCCccchhhHHHHHHHHhccccCceecCCCC-CCCHHHHHHHHHHHhc
Q 000742 1229 SCQKNSSFECQFVQELSSAIGMAKPLQLLDLSNN-GFSTQAVKTLYCAWSS 1278 (1313)
Q Consensus 1229 ~L~~L~Ls~n~l~~~l~~~l~~~~~L~~LdLs~N-~l~~~~~~~l~~~l~~ 1278 (1313)
...-+.+..|++|+.++|-+. .++.+++..+...+..
T Consensus 416 -------------d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~ 453 (483)
T KOG4341|consen 416 -------------DATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPN 453 (483)
T ss_pred -------------HHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCcc
Confidence 334466788899999999876 5777888877666544
No 110
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=1.4e-09 Score=117.17 Aligned_cols=251 Identities=11% Similarity=0.037 Sum_probs=195.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000742 163 KEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKI 242 (1313)
Q Consensus 163 p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~ 242 (1313)
|.....+..+|.+|+..|++++|+..|+++.-+ ++......-..|......|++++-.......+.+.+
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~---------dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-- 297 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA---------NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-- 297 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC---------ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh--
Confidence 455778899999999999999999999999887 566677788888899999999988888777777755
Q ss_pred chhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742 243 EHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRN 322 (1313)
Q Consensus 243 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~ 322 (1313)
..+.-|+--+...+..++++.|+.+-+|+++..+.......+.+.++.+++...+|.-.|..+....+.-..
T Consensus 298 ----~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~---- 369 (564)
T KOG1174|consen 298 ----YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLE---- 369 (564)
T ss_pred ----cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHH----
Confidence 455566777888889999999999999999999988887777788889999999998888877633322222
Q ss_pred HHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHH-HHH-HHhhCHHHHH
Q 000742 323 MIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIG-ESY-QKLRKFNKAI 400 (1313)
Q Consensus 323 l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg-~~y-~~~g~~~~A~ 400 (1313)
+|.-|...|.+.+.+.+|......+...... .+.++..+| .++ ..-.--++|.
T Consensus 370 -------------------~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~------sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 370 -------------------IYRGLFHSYLAQKRFKEANALANWTIRLFQN------SARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred -------------------HHHHHHHHHHhhchHHHHHHHHHHHHHHhhc------chhhhhhhcceeeccCchhHHHHH
Confidence 2556677788888888888777777665533 346666665 333 3334568999
Q ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhHHHH
Q 000742 401 KWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSH 470 (1313)
Q Consensus 401 ~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~~~~~~al~~L~~~~ 470 (1313)
+++++++.+.| +...+...+|+.+...|.++.++..+++++..+.+. ..+..||.+.
T Consensus 425 kf~ek~L~~~P------~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-------~LH~~Lgd~~ 481 (564)
T KOG1174|consen 425 KFAEKSLKINP------IYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-------NLHNHLGDIM 481 (564)
T ss_pred HHHHhhhccCC------ccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-------HHHHHHHHHH
Confidence 99999997754 666778889999999999999999999999886442 2455566554
No 111
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=6e-09 Score=110.04 Aligned_cols=386 Identities=14% Similarity=0.061 Sum_probs=229.9
Q ss_pred hhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChH
Q 000742 6 MQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFK 85 (1313)
Q Consensus 6 ~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~ 85 (1313)
++|..|+..++-....+... +-..-.++|.+|+..|+|++|+..|.-+.+.. ...++...++|.+++.+|.|.
T Consensus 36 rDytGAislLefk~~~~~EE-E~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~------~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREE-EDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD------DAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred ccchhHHHHHHHhhccchhh-hHHHHHHHHHHHHhhccHHHHHHHHHHHhccC------CCCcccchhHHHHHHHHHHHH
Confidence 56788888888877554433 33456689999999999999999998775522 223678889999999999999
Q ss_pred HHHHHHHHHH----------HHHHHHhcCHHHHHHHHHHHHH----------HHHHHhccCCcchhhHHHHHHHHHHHHH
Q 000742 86 DALIYQVKKH----------LELAKDASDLVEQQRACTQLGR----------TYYEMFLRSDDDHYSIRNAKKYFKSAMK 145 (1313)
Q Consensus 86 ~A~~~~~~ka----------l~l~~~~~~~~~~a~a~~~lg~----------~y~~l~~~~~~~~~~~~~A~~~~~~Al~ 145 (1313)
+|.... .++ ..++.+.++.......+..++. +++.. ..|++|++.|++.+.
T Consensus 109 eA~~~~-~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR--------~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 109 EAKSIA-EKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMR--------MHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHH-hhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHH--------HHHHHHHHHHHHHHh
Confidence 998776 443 2233444444433333333333 33322 445555555555554
Q ss_pred HHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHc--C
Q 000742 146 LAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMEL--R 223 (1313)
Q Consensus 146 l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~--g 223 (1313)
- .|.+...-.++|.+|+++.-|+-+.+.+.-.+...+. ...+....+...++. |
T Consensus 180 d---------------n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pd---------StiA~NLkacn~fRl~ng 235 (557)
T KOG3785|consen 180 D---------------NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPD---------STIAKNLKACNLFRLING 235 (557)
T ss_pred c---------------ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCC---------cHHHHHHHHHHHhhhhcc
Confidence 3 3467778888999999999999998888877776433 233444444333332 2
Q ss_pred CHH----------------HHHHHHH----------HHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 000742 224 MWD----------------KSREHIE----------QDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALN 277 (1313)
Q Consensus 224 ~~~----------------~A~~~~~----------kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~ 277 (1313)
+.. .+...++ -|++..|..- ...+.+..++...|.++++.++|+...+ +
T Consensus 236 r~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~--~~IPEARlNL~iYyL~q~dVqeA~~L~K---d 310 (557)
T KOG3785|consen 236 RTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLM--KHIPEARLNLIIYYLNQNDVQEAISLCK---D 310 (557)
T ss_pred chhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHH--hhChHhhhhheeeecccccHHHHHHHHh---h
Confidence 221 1111111 1222222111 2345678889999999999999987765 3
Q ss_pred HHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742 278 LAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWL 357 (1313)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~ 357 (1313)
+.|..+..+...+.++..+|+-.-..+.+.-+...++..-. .+....+... -..++.......+++
T Consensus 311 l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~----Sa~ecDTIpG----------RQsmAs~fFL~~qFd 376 (557)
T KOG3785|consen 311 LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGE----SALECDTIPG----------RQSMASYFFLSFQFD 376 (557)
T ss_pred cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcc----cccccccccc----------hHHHHHHHHHHHHHH
Confidence 55555555555555555666543333333333222221110 0000111000 112233344556777
Q ss_pred HHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHH
Q 000742 358 KHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWA 437 (1313)
Q Consensus 358 ~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~ 437 (1313)
+.+-|......++-... ...+++|+++...|+|.+|.+.|-+.-... ......-...+|.+|...|+++
T Consensus 377 dVl~YlnSi~sYF~NdD------~Fn~N~AQAk~atgny~eaEelf~~is~~~-----ikn~~~Y~s~LArCyi~nkkP~ 445 (557)
T KOG3785|consen 377 DVLTYLNSIESYFTNDD------DFNLNLAQAKLATGNYVEAEELFIRISGPE-----IKNKILYKSMLARCYIRNKKPQ 445 (557)
T ss_pred HHHHHHHHHHHHhcCcc------hhhhHHHHHHHHhcChHHHHHHHhhhcChh-----hhhhHHHHHHHHHHHHhcCCch
Confidence 77777766655553322 677889999999999999998886543111 1123334567999999999999
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHhhHH
Q 000742 438 GALDAFQEGYRIAVEANLPSVQLSALENMHY 468 (1313)
Q Consensus 438 ~A~~~~~kAl~i~~~~~~~~~~~~al~~L~~ 468 (1313)
-|-..|-+ .+.+...-..+.-++.
T Consensus 446 lAW~~~lk-------~~t~~e~fsLLqlIAn 469 (557)
T KOG3785|consen 446 LAWDMMLK-------TNTPSERFSLLQLIAN 469 (557)
T ss_pred HHHHHHHh-------cCCchhHHHHHHHHHH
Confidence 88776644 3444433444444444
No 112
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.32 E-value=2.2e-08 Score=116.08 Aligned_cols=149 Identities=19% Similarity=0.225 Sum_probs=94.8
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHH
Q 000742 12 KRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQ 91 (1313)
Q Consensus 12 ~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~ 91 (1313)
.+++++|++.++ +.++ ..|.+....|..++|+..|++.-... .+-..|...|.+++|.+..
T Consensus 789 aRAlR~a~q~~~-e~ea----kvAvLAieLgMlEeA~~lYr~ckR~D--------------LlNKlyQs~g~w~eA~eiA 849 (1416)
T KOG3617|consen 789 ARALRRAQQNGE-EDEA----KVAVLAIELGMLEEALILYRQCKRYD--------------LLNKLYQSQGMWSEAFEIA 849 (1416)
T ss_pred HHHHHHHHhCCc-chhh----HHHHHHHHHhhHHHHHHHHHHHHHHH--------------HHHHHHHhcccHHHHHHHH
Confidence 345566666544 4444 44666778889999999998864433 4566788888888887766
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHH----HHHHHHhccCCCCCc-chhhHHHH
Q 000742 92 VKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSA----MKLAQTLKENPATSR-SSFLKEYI 166 (1313)
Q Consensus 92 ~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~A----l~l~~~~~~~~~~~~-~~~~p~~~ 166 (1313)
+. .|....-..|++.|..+... ++.+.|++||+++ .++.+-+.+.++..+ ..-.....
T Consensus 850 -E~--------~DRiHLr~Tyy~yA~~Lear--------~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~ 912 (1416)
T KOG3617|consen 850 -ET--------KDRIHLRNTYYNYAKYLEAR--------RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDE 912 (1416)
T ss_pred -hh--------ccceehhhhHHHHHHHHHhh--------ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccch
Confidence 32 33333445678888877766 8899999999985 233332322221100 00000113
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhHh
Q 000742 167 DAHNNIGMLQMELDNLEEAKKFLIRGLEIC 196 (1313)
Q Consensus 167 ~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 196 (1313)
..|...|......|+.+.|+.+|..|-..+
T Consensus 913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D~f 942 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGEMDAALSFYSSAKDYF 942 (1416)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhhhh
Confidence 466677888888899999998888876553
No 113
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.30 E-value=1.8e-10 Score=126.56 Aligned_cols=194 Identities=13% Similarity=0.059 Sum_probs=150.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000742 163 KEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKI 242 (1313)
Q Consensus 163 p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~ 242 (1313)
+..+..++.+|..+...|++++|+..|++++...+. .+....+++.+|.+|...|++++|+..|+++++..+.
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~- 102 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPF------SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN- 102 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-
Confidence 456789999999999999999999999999988544 4556678999999999999999999999999998773
Q ss_pred chhhhHHHHHHHHHHHHHHh--------cCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 000742 243 EHCQGEAKGYINLGELHYRV--------QKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQ 314 (1313)
Q Consensus 243 ~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~ 314 (1313)
.+....+++.+|.++... |++++|++.|++++...|......... ..++....
T Consensus 103 --~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~----~~~~~~~~------------- 163 (235)
T TIGR03302 103 --HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAK----KRMDYLRN------------- 163 (235)
T ss_pred --CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHH----HHHHHHHH-------------
Confidence 233445788999999876 889999999999988877543221100 00000000
Q ss_pred HHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhh
Q 000742 315 NLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLR 394 (1313)
Q Consensus 315 ~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g 394 (1313)
........+|.+|..+|
T Consensus 164 ---------------------------------------------------------------~~~~~~~~~a~~~~~~g 180 (235)
T TIGR03302 164 ---------------------------------------------------------------RLAGKELYVARFYLKRG 180 (235)
T ss_pred ---------------------------------------------------------------HHHHHHHHHHHHHHHcC
Confidence 00122346888999999
Q ss_pred CHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000742 395 KFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYR 448 (1313)
Q Consensus 395 ~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~ 448 (1313)
++.+|+..|+++++..+. .+....+++.+|.+|...|++++|..+++....
T Consensus 181 ~~~~A~~~~~~al~~~p~---~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 181 AYVAAINRFETVVENYPD---TPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred ChHHHHHHHHHHHHHCCC---CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999977542 345678899999999999999999998876543
No 114
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.29 E-value=1.2e-09 Score=129.15 Aligned_cols=291 Identities=10% Similarity=0.018 Sum_probs=195.8
Q ss_pred hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccCh
Q 000742 5 EMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHF 84 (1313)
Q Consensus 5 ~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~ 84 (1313)
.|++++|.+.+.++.+..+.+... +...+.+....|++++|..+|.++.+..++ . ........+.++...|++
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~--~llaA~aA~~~g~~~~A~~~l~~A~~~~~~----~-~~~~~l~~a~l~l~~g~~ 169 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVN--YLLAAEAAQQRGDEARANQHLERAAELADN----D-QLPVEITRVRIQLARNEN 169 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHH--HHHHHHHHHHCCCHHHHHHHHHHHHhcCCc----c-hHHHHHHHHHHHHHCCCH
Confidence 588999998888876665443333 445577779999999999999999865422 1 122333458999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHH
Q 000742 85 KDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKE 164 (1313)
Q Consensus 85 ~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~ 164 (1313)
++|+..+ +++.+..|+.. .++..++.+|... |++++|+..+.+..+.... . .+.
T Consensus 170 ~~Al~~l-~~~~~~~P~~~------~al~ll~~~~~~~--------gdw~~a~~~l~~l~k~~~~----~-------~~~ 223 (398)
T PRK10747 170 HAARHGV-DKLLEVAPRHP------EVLRLAEQAYIRT--------GAWSSLLDILPSMAKAHVG----D-------EEH 223 (398)
T ss_pred HHHHHHH-HHHHhcCCCCH------HHHHHHHHHHHHH--------HhHHHHHHHHHHHHHcCCC----C-------HHH
Confidence 9999999 99999887765 4678889999988 9999999888887655210 0 001
Q ss_pred HH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742 165 YI----DAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICK 240 (1313)
Q Consensus 165 ~~----~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~ 240 (1313)
.. .++..+........+- +.+.+..+..++. .+....+...+|..+...|+.++|.+.++++++..+
T Consensus 224 ~~~l~~~a~~~l~~~~~~~~~~----~~l~~~w~~lp~~-----~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~ 294 (398)
T PRK10747 224 RAMLEQQAWIGLMDQAMADQGS----EGLKRWWKNQSRK-----TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY 294 (398)
T ss_pred HHHHHHHHHHHHHHHHHHhcCH----HHHHHHHHhCCHH-----HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 11 2333322222222222 3333333322221 233567888899999999999999999999987321
Q ss_pred HhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742 241 KIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLT 320 (1313)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~ 320 (1313)
........+. ...+++++|++.+++.++..|+......
T Consensus 295 -------~~~l~~l~~~--l~~~~~~~al~~~e~~lk~~P~~~~l~l--------------------------------- 332 (398)
T PRK10747 295 -------DERLVLLIPR--LKTNNPEQLEKVLRQQIKQHGDTPLLWS--------------------------------- 332 (398)
T ss_pred -------CHHHHHHHhh--ccCCChHHHHHHHHHHHhhCCCCHHHHH---------------------------------
Confidence 1122222222 2448999999999988877765443222
Q ss_pred HHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHH
Q 000742 321 RNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAI 400 (1313)
Q Consensus 321 ~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~ 400 (1313)
.+|..+...++|.+|.+++++++... |. ...+..++.++.++|+.++|.
T Consensus 333 ------------------------~lgrl~~~~~~~~~A~~~le~al~~~------P~-~~~~~~La~~~~~~g~~~~A~ 381 (398)
T PRK10747 333 ------------------------TLGQLLMKHGEWQEASLAFRAALKQR------PD-AYDYAWLADALDRLHKPEEAA 381 (398)
T ss_pred ------------------------HHHHHHHHCCCHHHHHHHHHHHHhcC------CC-HHHHHHHHHHHHHcCCHHHHH
Confidence 23334455666777777777776542 22 245677999999999999999
Q ss_pred HHHHHHHHHH
Q 000742 401 KWYTKSWEMY 410 (1313)
Q Consensus 401 ~~~~kal~l~ 410 (1313)
.+|++++.+.
T Consensus 382 ~~~~~~l~~~ 391 (398)
T PRK10747 382 AMRRDGLMLT 391 (398)
T ss_pred HHHHHHHhhh
Confidence 9999999765
No 115
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.29 E-value=1.2e-09 Score=128.53 Aligned_cols=323 Identities=12% Similarity=-0.057 Sum_probs=203.1
Q ss_pred hhHHHHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccCh
Q 000742 6 MQMSEAKRAYRSAKEEGNRQ-EEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHF 84 (1313)
Q Consensus 6 ~~~~~A~~~l~~a~~~~~~~-~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~ 84 (1313)
++.+.|.+.+.++.+..+.. ......+..|..+...|++++|.+.++++++..+.. ..++.. +..+...|++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~------~~a~~~-~~~~~~~~~~ 92 (355)
T cd05804 20 GERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRD------LLALKL-HLGAFGLGDF 92 (355)
T ss_pred CCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc------HHHHHH-hHHHHHhccc
Confidence 44566666666666554422 222336678999999999999999999999876322 344444 6667777766
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHH
Q 000742 85 KDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKE 164 (1313)
Q Consensus 85 ~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~ 164 (1313)
..+...+ .+++.. ..+.......++..+|.++... |++++|+..+++++++. |.
T Consensus 93 ~~~~~~~-~~~l~~--~~~~~~~~~~~~~~~a~~~~~~--------G~~~~A~~~~~~al~~~---------------p~ 146 (355)
T cd05804 93 SGMRDHV-ARVLPL--WAPENPDYWYLLGMLAFGLEEA--------GQYDRAEEAARRALELN---------------PD 146 (355)
T ss_pred ccCchhH-HHHHhc--cCcCCCCcHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhhC---------------CC
Confidence 6666666 666654 2222233345667888899877 99999999999999982 23
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhch
Q 000742 165 YIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEH 244 (1313)
Q Consensus 165 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~ 244 (1313)
.+.++..+|.+|+..|++++|+.++++++...+. ........+..+|.+|...|++++|+..|++++...+..
T Consensus 147 ~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~-----~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~-- 219 (355)
T cd05804 147 DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC-----SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAES-- 219 (355)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC-----CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCC--
Confidence 4678999999999999999999999999987543 123345678899999999999999999999986543210
Q ss_pred hhhHHHHHH--HHHHHHHHhcCHHHHHHHHHHHHHHHHHc-cChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742 245 CQGEAKGYI--NLGELHYRVQKYDEAILCYQKALNLAQSM-EDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTR 321 (1313)
Q Consensus 245 ~~~~~~~~~--~la~~~~~~g~~~~A~~~~~kal~~~~~~-~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~ 321 (1313)
......+. .+...+...|....+..+ +.+....... ........ .+
T Consensus 220 -~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~~~~~~----~~------------------------- 268 (355)
T cd05804 220 -DPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPDHGLAFN----DL------------------------- 268 (355)
T ss_pred -ChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCcccchHH----HH-------------------------
Confidence 11111101 112222233332222222 2222221111 11000000 00
Q ss_pred HHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCchhhHHHHHHHHHHHHHhhCHHH
Q 000742 322 NMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASE---LCDKGKLSDSFLVIGESYQKLRKFNK 398 (1313)
Q Consensus 322 ~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~---~~~~~~~a~~~~~lg~~y~~~g~~~~ 398 (1313)
..+......++++.|....+........ .........+....|.++...|++++
T Consensus 269 -----------------------~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~ 325 (355)
T cd05804 269 -----------------------HAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYAT 325 (355)
T ss_pred -----------------------HHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHH
Confidence 0111122233344455555554444443 23333455777888999999999999
Q ss_pred HHHHHHHHHHHHHHhCCchhHHHH
Q 000742 399 AIKWYTKSWEMYKSIGNLEGQALA 422 (1313)
Q Consensus 399 A~~~~~kal~l~~~~~~~~~~~~~ 422 (1313)
|+..+..++.+...+++..-+-.+
T Consensus 326 A~~~L~~al~~a~~~ggs~aq~~~ 349 (355)
T cd05804 326 ALELLGPVRDDLARIGGSHAQRDV 349 (355)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHH
Confidence 999999999999888876444433
No 116
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.28 E-value=3.7e-10 Score=126.64 Aligned_cols=234 Identities=15% Similarity=0.119 Sum_probs=177.9
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcC
Q 000742 25 QEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASD 104 (1313)
Q Consensus 25 ~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~ 104 (1313)
...+..|...|..|...|++++|.+.|.++.+...+.......+..|...+.+|... ++++|+.++ ++|++++...+.
T Consensus 32 e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~-~~A~~~y~~~G~ 109 (282)
T PF14938_consen 32 EEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECY-EKAIEIYREAGR 109 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHH-HHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHH-HHHHHHHHhcCc
Confidence 344677889999999999999999999999999988766666788888888888766 999999999 999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHH
Q 000742 105 LVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEE 184 (1313)
Q Consensus 105 ~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~ 184 (1313)
....+.++..+|.+|... .+++++|+++|++|+++++..+.. ......+..+|.++...|+|++
T Consensus 110 ~~~aA~~~~~lA~~ye~~-------~~d~e~Ai~~Y~~A~~~y~~e~~~---------~~a~~~~~~~A~l~~~l~~y~~ 173 (282)
T PF14938_consen 110 FSQAAKCLKELAEIYEEQ-------LGDYEKAIEYYQKAAELYEQEGSP---------HSAAECLLKAADLYARLGRYEE 173 (282)
T ss_dssp HHHHHHHHHHHHHHHCCT-------T--HHHHHHHHHHHHHHHHHTT-H---------HHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHHHHHCCCh---------hhHHHHHHHHHHHHHHhCCHHH
Confidence 999999999999999632 179999999999999999877643 2567889999999999999999
Q ss_pred HHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHH--h
Q 000742 185 AKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYR--V 262 (1313)
Q Consensus 185 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~--~ 262 (1313)
|++.|++......+. ..........+...+.+++..|++..|...+++.....+...+. ........+-.++.. .
T Consensus 174 A~~~~e~~~~~~l~~--~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s-~E~~~~~~l~~A~~~~D~ 250 (282)
T PF14938_consen 174 AIEIYEEVAKKCLEN--NLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASS-REYKFLEDLLEAYEEGDV 250 (282)
T ss_dssp HHHHHHHHHHTCCCH--CTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS-HHHHHHHHHHHHHHTT-C
T ss_pred HHHHHHHHHHHhhcc--cccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc-HHHHHHHHHHHHHHhCCH
Confidence 999999998765432 11223344566788999999999999999999988776644332 334455566565543 3
Q ss_pred cCHHHHHHHHHHHHHHH
Q 000742 263 QKYDEAILCYQKALNLA 279 (1313)
Q Consensus 263 g~~~~A~~~~~kal~~~ 279 (1313)
..+++|+.-|...-+++
T Consensus 251 e~f~~av~~~d~~~~ld 267 (282)
T PF14938_consen 251 EAFTEAVAEYDSISRLD 267 (282)
T ss_dssp CCHHHHCHHHTTSS---
T ss_pred HHHHHHHHHHcccCccH
Confidence 45666666666555444
No 117
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.2e-11 Score=127.71 Aligned_cols=162 Identities=27% Similarity=0.275 Sum_probs=91.2
Q ss_pred CCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCCCCCChhhHHHHHH
Q 000742 917 TRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLV 996 (1313)
Q Consensus 917 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 996 (1313)
+.|++||||+..|+.. .+..+|+.|..|+.|.|.++.+.+ .++..+..+.+|+.|+|+.+.-++..+...++.
T Consensus 185 sRlq~lDLS~s~it~s---tl~~iLs~C~kLk~lSlEg~~LdD----~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~ 257 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVS---TLHGILSQCSKLKNLSLEGLRLDD----PIVNTIAKNSNLVRLNLSMCSGFTENALQLLLS 257 (419)
T ss_pred hhhHHhhcchhheeHH---HHHHHHHHHHhhhhccccccccCc----HHHHHHhccccceeeccccccccchhHHHHHHH
Confidence 3577777777777755 355566777777777777777776 444445567777777777776555555444433
Q ss_pred hhccCCccceeecCCCCCChHHHHHHHHHhhcCCccEEEccCCC--CCCchHHHHHHHHhcCCCcccEEEccCCC-CChh
Q 000742 997 KLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTN--LGSDGSLQLVESLFSRAQESVKLDLSYCG-LEST 1073 (1313)
Q Consensus 997 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~--i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~ 1073 (1313)
+|+.|.+|+|+.|.++.+.+..+..-. ..+|+.|+|+++. +.+..+. .+...++.|.+||||+|. |++.
T Consensus 258 ---scs~L~~LNlsWc~l~~~~Vtv~V~hi-se~l~~LNlsG~rrnl~~sh~~----tL~~rcp~l~~LDLSD~v~l~~~ 329 (419)
T KOG2120|consen 258 ---SCSRLDELNLSWCFLFTEKVTVAVAHI-SETLTQLNLSGYRRNLQKSHLS----TLVRRCPNLVHLDLSDSVMLKND 329 (419)
T ss_pred ---hhhhHhhcCchHhhccchhhhHHHhhh-chhhhhhhhhhhHhhhhhhHHH----HHHHhCCceeeeccccccccCch
Confidence 666777777777776555443332211 2346666666542 2222211 122334555555555554 3332
Q ss_pred HHHHHHHHHhcCCCccEEEccCCC
Q 000742 1074 CIHKFTASVSLVHGILELNLGGNP 1097 (1313)
Q Consensus 1074 ~~~~l~~~l~~~~~L~~L~Ls~N~ 1097 (1313)
....+..++.|++|.|+.|.
T Consensus 330 ----~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 330 ----CFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred ----HHHHHHhcchheeeehhhhc
Confidence 12223345555555555554
No 118
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.25 E-value=4.3e-08 Score=112.42 Aligned_cols=378 Identities=14% Similarity=0.122 Sum_probs=246.8
Q ss_pred hhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChH
Q 000742 6 MQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFK 85 (1313)
Q Consensus 6 ~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~ 85 (1313)
|+-++|....+.+++.+...... |+.+|.++....+|++|+++|+.|+.+.+. ...++..++.....+++|+
T Consensus 55 g~~~ea~~~vr~glr~d~~S~vC--wHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d------N~qilrDlslLQ~QmRd~~ 126 (700)
T KOG1156|consen 55 GKKEEAYELVRLGLRNDLKSHVC--WHVLGLLQRSDKKYDEAIKCYRNALKIEKD------NLQILRDLSLLQIQMRDYE 126 (700)
T ss_pred cchHHHHHHHHHHhccCcccchh--HHHHHHHHhhhhhHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHHHhhh
Confidence 56678888888888877776666 999999999999999999999999988743 3789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHH
Q 000742 86 DALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEY 165 (1313)
Q Consensus 86 ~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~ 165 (1313)
-....- .+.+++.+... ..|...+..+.-. |++..|....+.-.+......+ ...-..
T Consensus 127 ~~~~tr-~~LLql~~~~r------a~w~~~Avs~~L~--------g~y~~A~~il~ef~~t~~~~~s-------~~~~e~ 184 (700)
T KOG1156|consen 127 GYLETR-NQLLQLRPSQR------ASWIGFAVAQHLL--------GEYKMALEILEEFEKTQNTSPS-------KEDYEH 184 (700)
T ss_pred hHHHHH-HHHHHhhhhhH------HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhhccCCC-------HHHHHH
Confidence 988887 88888776543 4577888888877 8999998888776665431111 112355
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchh
Q 000742 166 IDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHC 245 (1313)
Q Consensus 166 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~ 245 (1313)
..+......+....|.+++|++.+.+--.- ...........|.++..++++++|...|...+...|
T Consensus 185 se~~Ly~n~i~~E~g~~q~ale~L~~~e~~---------i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnP----- 250 (700)
T KOG1156|consen 185 SELLLYQNQILIEAGSLQKALEHLLDNEKQ---------IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNP----- 250 (700)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHhhhhH---------HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCc-----
Confidence 667777788888899988888877664332 222345567789999999999999999999998877
Q ss_pred hhHHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHH-------------HHHHHHH
Q 000742 246 QGEAKGYINLGELHYRVQKYDEAI-LCYQKALNLAQSMEDEDALASQIDQNIETVKKAIE-------------VMDELKK 311 (1313)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~-~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~-------------~~~~a~~ 311 (1313)
+....|..+-.++..-.+--+++ ..|...-+..+...-....--.+... ......+. .+.....
T Consensus 251 -dn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~-eel~~~vdkyL~~~l~Kg~p~vf~dl~S 328 (700)
T KOG1156|consen 251 -DNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNG-EELKEIVDKYLRPLLSKGVPSVFKDLRS 328 (700)
T ss_pred -hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCc-chhHHHHHHHHHHHhhcCCCchhhhhHH
Confidence 55555555555554222222333 33333332222221111000000000 00000000 0111111
Q ss_pred HHH------HHHHHHHHHHH----h-------hCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 000742 312 EEQ------NLKKLTRNMII----A-------KGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELC 374 (1313)
Q Consensus 312 ~~~------~~~~l~~~l~~----~-------~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~ 374 (1313)
.++ -+..+...+.. . .+..+.+ ....+++..++..+...++++.|..|...|+.
T Consensus 329 Lyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~P---ttllWt~y~laqh~D~~g~~~~A~~yId~AId------ 399 (700)
T KOG1156|consen 329 LYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPP---TTLLWTLYFLAQHYDKLGDYEVALEYIDLAID------ 399 (700)
T ss_pred HHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCc---hHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc------
Confidence 110 01111111110 0 0111111 12235567778888889999999998887754
Q ss_pred CchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHH-HHHHHHHHcCCHHHHHHHHHH
Q 000742 375 DKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKV-NMGNVLDSNGDWAGALDAFQE 445 (1313)
Q Consensus 375 ~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~-~lg~~y~~~g~~~~A~~~~~k 445 (1313)
.-|...+.|...|+++...|+.++|..++..|-+++.. ..+.. .-|......++.++|.+...+
T Consensus 400 HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~a-------DR~INsKcAKYmLrAn~i~eA~~~~sk 464 (700)
T KOG1156|consen 400 HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTA-------DRAINSKCAKYMLRANEIEEAEEVLSK 464 (700)
T ss_pred cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccch-------hHHHHHHHHHHHHHccccHHHHHHHHH
Confidence 55777799999999999999999999999999987541 11222 467777888899988876554
No 119
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.24 E-value=2.6e-10 Score=125.28 Aligned_cols=114 Identities=18% Similarity=0.180 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCH
Q 000742 26 EEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDL 105 (1313)
Q Consensus 26 ~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~ 105 (1313)
..+..++.+|..++..|++++|+..|++++...+.. +....+++.+|.+|...|++++|+..+ +++++..|+....
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~a~~~la~~~~~~~~~~~A~~~~-~~~l~~~p~~~~~ 106 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFS---PYAEQAQLDLAYAYYKSGDYAEAIAAA-DRFIRLHPNHPDA 106 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---hhHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHCcCCCch
Confidence 345569999999999999999999999998876422 333578899999999999999999999 9999998876653
Q ss_pred HHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHH
Q 000742 106 VEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKL 146 (1313)
Q Consensus 106 ~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l 146 (1313)
..+++.+|.+|...........+++++|+..|++++..
T Consensus 107 ---~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 144 (235)
T TIGR03302 107 ---DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR 144 (235)
T ss_pred ---HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence 24688899998764222223447899999999999876
No 120
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=1.6e-06 Score=96.12 Aligned_cols=441 Identities=13% Similarity=0.014 Sum_probs=282.7
Q ss_pred hHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHhhCCC-CCchhHHHHHHHHHHHcc-
Q 000742 7 QMSEAKRAYRSAKEEGNR-QEEARWANVIGDIL-KNRGEYVEALKWFRIDYDVSVKYLPE-KHLLPTCQSLGEVYLRLE- 82 (1313)
Q Consensus 7 ~~~~A~~~l~~a~~~~~~-~~~a~~~~~lg~~y-~~~g~~~eAl~~~~~al~~~~~~~~~-~~~~~~~~~lg~~y~~~g- 82 (1313)
++..+++.++......+. ..+|+....+|.++ ....+++.|...+++|+.+......- .....++..++.+|....
T Consensus 24 kIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~ 103 (629)
T KOG2300|consen 24 KIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQ 103 (629)
T ss_pred hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcC
Confidence 567788887777665544 56788888998776 56789999999999999998766433 234678889999998887
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHH---------------------
Q 000742 83 HFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFK--------------------- 141 (1313)
Q Consensus 83 ~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~--------------------- 141 (1313)
.+..|...+ ++|+++....+. .-.+..+.++.++.-. .++..|++.+.
T Consensus 104 s~~~~KalL-rkaielsq~~p~--wsckllfQLaql~~id--------kD~~sA~elLavga~sAd~~~~~ylr~~ftls 172 (629)
T KOG2300|consen 104 SFPPAKALL-RKAIELSQSVPY--WSCKLLFQLAQLHIID--------KDFPSALELLAVGAESADHICFPYLRMLFTLS 172 (629)
T ss_pred CCchHHHHH-HHHHHHhcCCch--hhHHHHHHHHHHHhhh--------ccchhHHHHHhccccccchhhhHHHHHHHHHH
Confidence 888999999 999999887763 3455666777776644 55555544421
Q ss_pred ---------------HHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhHhhhhcc----
Q 000742 142 ---------------SAMKLAQTLKENPATSRSSFLKEYIDAHNNIGML-QMELDNLEEAKKFLIRGLEICNEEEV---- 201 (1313)
Q Consensus 142 ---------------~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~-y~~~g~~~~A~~~~~~al~~~~~~~~---- 201 (1313)
+++..+..+.+.....+. .....-..|..+-.. |...|+...+...+++.-.-......
T Consensus 173 ~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~-~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~ 251 (629)
T KOG2300|consen 173 MLMLLIMERDDYDVEKLLQRCGQIWQNISSDKT-QKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRG 251 (629)
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHHhccCCChH-HHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCC
Confidence 122223333222211110 011112223333333 44556665555544433222111100
Q ss_pred ------CCCchH--------HHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHHHHHhchhhh--------HHHHHHHHHH
Q 000742 202 ------SEDDDG--------RSRLHHNLGNV--YMELRMWDKSREHIEQDIIICKKIEHCQG--------EAKGYINLGE 257 (1313)
Q Consensus 202 ------~~~~~~--------~~~~~~~lg~~--y~~~g~~~~A~~~~~kal~~~~~~~~~~~--------~~~~~~~la~ 257 (1313)
+...+. ...++..+-.+ -...|-+++|.+|-++++...++....+. ....+.++..
T Consensus 252 h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~ 331 (629)
T KOG2300|consen 252 HDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVM 331 (629)
T ss_pred ccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHH
Confidence 011111 11112222111 13457789999999999998776643332 2334556677
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHHHccChh---HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHH
Q 000742 258 LHYRVQKYDEAILCYQKALNLAQSMEDED---ALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERK 334 (1313)
Q Consensus 258 ~~~~~g~~~~A~~~~~kal~~~~~~~~~~---~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~ 334 (1313)
+-.-.|++.+|++....+.+.....+.+. ....+++.-+|.+.-....|+.|...+....++......
T Consensus 332 c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl--------- 402 (629)
T KOG2300|consen 332 CRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDL--------- 402 (629)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHH---------
Confidence 77788999999999999999988877632 334567888888888888888887666655554332221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Q 000742 335 YLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASEL----CDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMY 410 (1313)
Q Consensus 335 ~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~----~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~ 410 (1313)
++..--+++..|...++ +.++++....+.... ......+.+++..|-..+.++++.+|...+.+.+++.
T Consensus 403 ----~a~~nlnlAi~YL~~~~---~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 403 ----QAFCNLNLAISYLRIGD---AEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred ----HHHHHHhHHHHHHHhcc---HHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 22223345555544332 333333332222211 1122357788888999999999999999999999988
Q ss_pred HHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhHHHHHHhhc
Q 000742 411 KSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMIRFD 475 (1313)
Q Consensus 411 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~~~~~~al~~L~~~~~~~~~ 475 (1313)
...+...-.+..+..+|.+....|+..++.+...-++.++++..+...+.-...-+-..|...++
T Consensus 476 naed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~ 540 (629)
T KOG2300|consen 476 NAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGE 540 (629)
T ss_pred chhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCc
Confidence 54444445566788899999999999999999999999999998888777666666666655555
No 121
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.23 E-value=9.3e-10 Score=123.44 Aligned_cols=229 Identities=17% Similarity=0.156 Sum_probs=168.9
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccCh
Q 000742 206 DGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDE 285 (1313)
Q Consensus 206 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~ 285 (1313)
..-+..|...|..|...|++++|.+.|.++.....+.++....+..|...+.+|.+. ++++|+.+|++|+.+....+..
T Consensus 32 e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~ 110 (282)
T PF14938_consen 32 EEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRF 110 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-H
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcH
Confidence 345777888899999999999999999999999999888888999999999998776 9999999999999998766543
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 000742 286 DALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMI-FAWLKHCEYAK 364 (1313)
Q Consensus 286 ~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~-~~~~~A~~~~~ 364 (1313)
... +..+..++..+... +++++|+++|+
T Consensus 111 ~~a---------------------------------------------------A~~~~~lA~~ye~~~~d~e~Ai~~Y~ 139 (282)
T PF14938_consen 111 SQA---------------------------------------------------AKCLKELAEIYEEQLGDYEKAIEYYQ 139 (282)
T ss_dssp HHH---------------------------------------------------HHHHHHHHHHHCCTT--HHHHHHHHH
T ss_pred HHH---------------------------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 221 22355666677676 88999999999
Q ss_pred HHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCC-chhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000742 365 RKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGN-LEGQALAKVNMGNVLDSNGDWAGALDAF 443 (1313)
Q Consensus 365 ~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~-~~~~~~~~~~lg~~y~~~g~~~~A~~~~ 443 (1313)
+|..++...+.......++..+|.++...|+|++|++.|++.......... .......+...+.++...||+..|...+
T Consensus 140 ~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~ 219 (282)
T PF14938_consen 140 KAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKAL 219 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999998877788899999999999999999999999998865432222 2334445678889999999999999999
Q ss_pred HHHHHHHHHcCChhHHHHHHHhhHHHHHH-hhcCHHHHHHHHHHH
Q 000742 444 QEGYRIAVEANLPSVQLSALENMHYSHMI-RFDNIEEARRLQHEI 487 (1313)
Q Consensus 444 ~kAl~i~~~~~~~~~~~~al~~L~~~~~~-~~~~~~~a~~~~e~~ 487 (1313)
++............ +...+..|-..+.. ..+.+.++..-+..+
T Consensus 220 ~~~~~~~~~F~~s~-E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 220 ERYCSQDPSFASSR-EYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHGTTSTTSTTSH-HHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHhhCCCCCCcH-HHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 98877654444433 34455555554433 334444444444433
No 122
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.21 E-value=7.3e-07 Score=98.28 Aligned_cols=354 Identities=10% Similarity=0.046 Sum_probs=226.0
Q ss_pred cchhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHcc
Q 000742 3 RDEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLE 82 (1313)
Q Consensus 3 ~~~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g 82 (1313)
..++++..|...+++|+..+...... +...+.+-........|...+++|+.+.|.. -..++....+-..+|
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itL--WlkYae~Emknk~vNhARNv~dRAvt~lPRV------dqlWyKY~ymEE~Lg 155 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITL--WLKYAEFEMKNKQVNHARNVWDRAVTILPRV------DQLWYKYIYMEEMLG 155 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchH--HHHHHHHHHhhhhHhHHHHHHHHHHHhcchH------HHHHHHHHHHHHHhc
Confidence 45788899999999999888776555 7788888889999999999999999888543 566777777777889
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhh
Q 000742 83 HFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFL 162 (1313)
Q Consensus 83 ~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~ 162 (1313)
+..-|.+.| ++-++..|... +|...-..-... ...+.|...|++-+-. +
T Consensus 156 Ni~gaRqif-erW~~w~P~eq-------aW~sfI~fElRy--------keieraR~IYerfV~~-------H-------- 204 (677)
T KOG1915|consen 156 NIAGARQIF-ERWMEWEPDEQ-------AWLSFIKFELRY--------KEIERARSIYERFVLV-------H-------- 204 (677)
T ss_pred ccHHHHHHH-HHHHcCCCcHH-------HHHHHHHHHHHh--------hHHHHHHHHHHHHhee-------c--------
Confidence 999999999 88888766542 232222222222 4555566555554322 1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000742 163 KEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKI 242 (1313)
Q Consensus 163 p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~ 242 (1313)
-.+..+...|..-...|+..-|...|++|++.... +......+...|..-..++.++.|...|+-|+...++.
T Consensus 205 -P~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~------d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~ 277 (677)
T KOG1915|consen 205 -PKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD------DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKG 277 (677)
T ss_pred -ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 11355666666677777777777777777776432 33344455555555566666666666666665544331
Q ss_pred --------------------------------------chhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccC
Q 000742 243 --------------------------------------EHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMED 284 (1313)
Q Consensus 243 --------------------------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~ 284 (1313)
...+....+++..-.+-...|+.+.-.+.|++|+.-.|....
T Consensus 278 raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~e 357 (677)
T KOG1915|consen 278 RAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASE 357 (677)
T ss_pred cHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhH
Confidence 122444566777777777789999999999999987776544
Q ss_pred hhHHHHHHHH--h--------HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhCCchHHHHHHHHHHHH----
Q 000742 285 EDALASQIDQ--N--------IETVKKAIEVMDELKKEE-------QNLKKLTRNMIIAKGTSQERKYLLQQNASL---- 343 (1313)
Q Consensus 285 ~~~~~~~~~~--~--------lg~~~~a~~~~~~a~~~~-------~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l---- 343 (1313)
.......+|. + ..++..+...|+..++.. .++-.++......+.+...|+..+..+...
T Consensus 358 kr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~ 437 (677)
T KOG1915|consen 358 KRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD 437 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch
Confidence 4333322222 1 233444555555544322 233344444555555555555555444322
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 000742 344 ---DRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWE 408 (1313)
Q Consensus 344 ---~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~ 408 (1313)
....+.-....+++....+|++.++.. |....++...|..-..+|+.+.|...|+-|+.
T Consensus 438 KlFk~YIelElqL~efDRcRkLYEkfle~~------Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~ 499 (677)
T KOG1915|consen 438 KLFKGYIELELQLREFDRCRKLYEKFLEFS------PENCYAWSKYAELETSLGDTDRARAIFELAIS 499 (677)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHhcC------hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 223334455667777777777766543 55558888888888888888888888887764
No 123
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=7.2e-09 Score=107.06 Aligned_cols=221 Identities=14% Similarity=0.136 Sum_probs=152.8
Q ss_pred hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccCh
Q 000742 5 EMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHF 84 (1313)
Q Consensus 5 ~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~ 84 (1313)
..+|..|++++..-.+..|....+ +..+|.+|+...+|..|...|.+.-...|+. .......+..++..+.|
T Consensus 23 d~ry~DaI~~l~s~~Er~p~~rAg--LSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~------~qYrlY~AQSLY~A~i~ 94 (459)
T KOG4340|consen 23 DARYADAIQLLGSELERSPRSRAG--LSLLGYCYYRLQEFALAAECYEQLGQLHPEL------EQYRLYQAQSLYKACIY 94 (459)
T ss_pred HhhHHHHHHHHHHHHhcCccchHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhChHH------HHHHHHHHHHHHHhccc
Confidence 457888888888888888876666 7789999999999999999999887776543 55666778888888999
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHH
Q 000742 85 KDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKE 164 (1313)
Q Consensus 85 ~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~ 164 (1313)
..|+... ....+. +.. ..++...-+.+.+.. +++..+.. +.++.... +
T Consensus 95 ADALrV~-~~~~D~-~~L-----~~~~lqLqaAIkYse--------~Dl~g~rs-------LveQlp~e----------n 142 (459)
T KOG4340|consen 95 ADALRVA-FLLLDN-PAL-----HSRVLQLQAAIKYSE--------GDLPGSRS-------LVEQLPSE----------N 142 (459)
T ss_pred HHHHHHH-HHhcCC-HHH-----HHHHHHHHHHHhccc--------ccCcchHH-------HHHhccCC----------C
Confidence 8888776 443321 111 111111111221111 22222221 22222211 3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--
Q 000742 165 YIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKI-- 242 (1313)
Q Consensus 165 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~-- 242 (1313)
.+....+.|-+.++.|+|+.|++-|+.|++.. +.. ..+-+++|.++++.|+++.|+++..+.++..-+.
T Consensus 143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvs------Gyq---pllAYniALaHy~~~qyasALk~iSEIieRG~r~HP 213 (459)
T KOG4340|consen 143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVS------GYQ---PLLAYNLALAHYSSRQYASALKHISEIIERGIRQHP 213 (459)
T ss_pred ccchhccchheeeccccHHHHHHHHHHHHhhc------CCC---chhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCC
Confidence 46788999999999999999999999999982 333 3456899999999999999999998888764331
Q ss_pred ----------------ch-----hhhHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 000742 243 ----------------EH-----CQGEAKGYINLGELHYRVQKYDEAILCYQK 274 (1313)
Q Consensus 243 ----------------~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~k 274 (1313)
++ ......+++..+.++++.++++.|.+.+..
T Consensus 214 ElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtD 266 (459)
T KOG4340|consen 214 ELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTD 266 (459)
T ss_pred ccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhc
Confidence 01 123456777888899999999998876653
No 124
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.16 E-value=4.9e-08 Score=116.13 Aligned_cols=257 Identities=12% Similarity=0.058 Sum_probs=144.5
Q ss_pred chhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHcc-
Q 000742 4 DEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLE- 82 (1313)
Q Consensus 4 ~~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g- 82 (1313)
+.|++++|++.+......-.+.... +-..|.+|...|++++|...|+..++..+.. ...|..+..+.....
T Consensus 16 e~g~~~~AL~~L~~~~~~I~Dk~~~--~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn------~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 16 EAGDYEEALEHLEKNEKQILDKLAV--LEKRAELLLKLGRKEEAEKIYRELIDRNPDN------YDYYRGLEEALGLQLQ 87 (517)
T ss_pred HCCCHHHHHHHHHhhhhhCCCHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHhhhcc
Confidence 3456666666666554444443333 5566666666666666666666666655221 444444444442222
Q ss_pred ----ChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHH-HHHHHHHHHHHHHhccCCCCC
Q 000742 83 ----HFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNA-KKYFKSAMKLAQTLKENPATS 157 (1313)
Q Consensus 83 ----~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A-~~~~~~Al~l~~~~~~~~~~~ 157 (1313)
+.+.-...| ++....+|..... ..+...+.. ...+... ..|+...+.-
T Consensus 88 ~~~~~~~~~~~~y-~~l~~~yp~s~~~-------~rl~L~~~~--------g~~F~~~~~~yl~~~l~K----------- 140 (517)
T PF12569_consen 88 LSDEDVEKLLELY-DELAEKYPRSDAP-------RRLPLDFLE--------GDEFKERLDEYLRPQLRK----------- 140 (517)
T ss_pred cccccHHHHHHHH-HHHHHhCccccch-------hHhhcccCC--------HHHHHHHHHHHHHHHHhc-----------
Confidence 233334444 4333333322111 111111110 0223322 2333333211
Q ss_pred cchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhh---cc-----CCCchHHHHHHHHHHHHHHHcCCHHHHH
Q 000742 158 RSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEE---EV-----SEDDDGRSRLHHNLGNVYMELRMWDKSR 229 (1313)
Q Consensus 158 ~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~---~~-----~~~~~~~~~~~~~lg~~y~~~g~~~~A~ 229 (1313)
..+..+.++-..|....+.+-....+.......... .. ...+.....+++.+|..|...|++++|+
T Consensus 141 ------gvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al 214 (517)
T PF12569_consen 141 ------GVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKAL 214 (517)
T ss_pred ------CCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHH
Confidence 224456666666654433332223333322221110 00 1223344678899999999999999999
Q ss_pred HHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHH
Q 000742 230 EHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMD 307 (1313)
Q Consensus 230 ~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~ 307 (1313)
+++++||+..| .....|...|.+|.+.|++.+|.++++.|..++..........+..+...|.+.+|...+.
T Consensus 215 ~~Id~aI~htP------t~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~ 286 (517)
T PF12569_consen 215 EYIDKAIEHTP------TLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTAS 286 (517)
T ss_pred HHHHHHHhcCC------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999865 7889999999999999999999999999999887655444455555556666666555443
No 125
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.15 E-value=2.4e-07 Score=107.73 Aligned_cols=412 Identities=13% Similarity=0.088 Sum_probs=227.4
Q ss_pred hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccCh
Q 000742 5 EMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHF 84 (1313)
Q Consensus 5 ~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~ 84 (1313)
.|.+++|+.+|++..+ |-.+-..|...|.+++|.+..+ ..+.-++-.+|++.|..+...++.
T Consensus 813 LgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE--------~~DRiHLr~Tyy~yA~~Lear~Di 874 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAE--------TKDRIHLRNTYYNYAKYLEARRDI 874 (1416)
T ss_pred HhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHh--------hccceehhhhHHHHHHHHHhhccH
Confidence 4556666666666543 3345566777778877776654 235566778999999999999999
Q ss_pred HHHHHHHHHHHHHHH----HHhcCHHHHH----------HHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHh
Q 000742 85 KDALIYQVKKHLELA----KDASDLVEQQ----------RACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTL 150 (1313)
Q Consensus 85 ~~A~~~~~~kal~l~----~~~~~~~~~a----------~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~ 150 (1313)
+.|++|| +++-..+ +-..+..... ..|...|...... |+.+.|+.+|..|-..+...
T Consensus 875 ~~Aleyy-EK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~--------GemdaAl~~Y~~A~D~fs~V 945 (1416)
T KOG3617|consen 875 EAALEYY-EKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESV--------GEMDAALSFYSSAKDYFSMV 945 (1416)
T ss_pred HHHHHHH-HhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcc--------cchHHHHHHHHHhhhhhhhe
Confidence 9999999 8763221 1111111111 2233444444433 88999999998876654332
Q ss_pred ccCCCCCcc------hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------hHhhhhccCCCchHHHH--------
Q 000742 151 KENPATSRS------SFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGL------EICNEEEVSEDDDGRSR-------- 210 (1313)
Q Consensus 151 ~~~~~~~~~------~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al------~~~~~~~~~~~~~~~~~-------- 210 (1313)
.-.--..+. .-....-.+.+.+|..|...|++.+|+.+|.+|- .++++. +.......
T Consensus 946 rI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEn---d~~d~L~nlal~s~~~ 1022 (1416)
T KOG3617|consen 946 RIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEN---DMKDRLANLALMSGGS 1022 (1416)
T ss_pred eeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc---CHHHHHHHHHhhcCch
Confidence 111000000 0000123477889999999999999999988864 445442 11111111
Q ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHH------------------hchhhhHHHHHHHHHHHHHHhcCHHHHHHH
Q 000742 211 LHHNLGNVYMELR-MWDKSREHIEQDIIICKK------------------IEHCQGEAKGYINLGELHYRVQKYDEAILC 271 (1313)
Q Consensus 211 ~~~~lg~~y~~~g-~~~~A~~~~~kal~~~~~------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 271 (1313)
-....|..|...| ++.+|...|.+|=-+.+. --+....+..+..-+..+....+|++|...
T Consensus 1023 d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~l 1102 (1416)
T KOG3617|consen 1023 DLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNL 1102 (1416)
T ss_pred hHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHH
Confidence 1223456666666 777787777654222211 112234566777888999999999999887
Q ss_pred HHHH------HHHHHHccCh-------------------------hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742 272 YQKA------LNLAQSMEDE-------------------------DALASQIDQNIETVKKAIEVMDELKKEEQNLKKLT 320 (1313)
Q Consensus 272 ~~ka------l~~~~~~~~~-------------------------~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~ 320 (1313)
+-.+ +.+....+-. ...++.+....|.|..|.+.|.++.....+...+.
T Consensus 1103 L~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~AMraLL 1182 (1416)
T KOG3617|consen 1103 LCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLSAMRALL 1182 (1416)
T ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHHHHHHHH
Confidence 6554 4433221100 01123345556667777777777766555554443
Q ss_pred HHH---------------------------HHhhCCc---hHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH
Q 000742 321 RNM---------------------------IIAKGTS---QERKYLLQQNASLDRLIEKSS--------MIFAWLKHCEY 362 (1313)
Q Consensus 321 ~~l---------------------------~~~~~~~---~~a~~~~~~~~~l~~L~~~~~--------~~~~~~~A~~~ 362 (1313)
..- .+.+.++ .....++..+.+++.|+..|. ....|++|.-.
T Consensus 1183 KSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~tFYTKgqafd~LanFY~~cAqiEiee~q~ydKa~gA 1262 (1416)
T KOG3617|consen 1183 KSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIETFYTKGQAFDHLANFYKSCAQIEIEELQTYDKAMGA 1262 (1416)
T ss_pred hcCCcceEEEEeeccccceeeeehhhhhhhcccccChHHHhhhHhhhhcchhHHHHHHHHHHHHHhhHHHHhhhhHHhHH
Confidence 210 0111222 233455666677888877763 34566777666
Q ss_pred HHHHHHHHHHhCCchhhHHHHHHH----HHHHH-------HhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Q 000742 363 AKRKKRIASELCDKGKLSDSFLVI----GESYQ-------KLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLD 431 (1313)
Q Consensus 363 ~~~a~~i~~~~~~~~~~a~~~~~l----g~~y~-------~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~ 431 (1313)
+++|.....+.......-..+..| +.+-. ...+....+..++-.++ .+...+.-.....+-.+-..|.
T Consensus 1263 l~eA~kCl~ka~~k~~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lle-ep~ld~~Ir~~~~~a~lie~~v 1341 (1416)
T KOG3617|consen 1263 LEEAAKCLLKAEQKNMSTTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLE-EPILDDIIRCTRLFALLIEDHV 1341 (1416)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh-CcCCCCcchhHHHHHHHHHHHH
Confidence 666655444433222211122221 11110 11122222222222221 1122223334566777788888
Q ss_pred HcCCHHHHHHHHHHHH
Q 000742 432 SNGDWAGALDAFQEGY 447 (1313)
Q Consensus 432 ~~g~~~~A~~~~~kAl 447 (1313)
..++|+.|..++++.-
T Consensus 1342 ~~k~y~~AyRal~el~ 1357 (1416)
T KOG3617|consen 1342 SRKNYKPAYRALTELQ 1357 (1416)
T ss_pred hhhhccHHHHHHHHHh
Confidence 8899999988777643
No 126
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=6.6e-12 Score=136.91 Aligned_cols=241 Identities=18% Similarity=0.098 Sum_probs=151.8
Q ss_pred EEEccCCCCCHHHHHHHHhcccCCCCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcC
Q 000742 893 TLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAE 972 (1313)
Q Consensus 893 ~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 972 (1313)
.+.+++-.+...|+..++.-=..+..|++..|.+..+.+.|.. ...+.|++++.|+|+.|-|.. +..+......+
T Consensus 97 ~~si~nK~vE~iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~---~~~k~~~~v~~LdLS~NL~~n--w~~v~~i~eqL 171 (505)
T KOG3207|consen 97 VLSISNKQVEFIGFDKIAAKQSNLKKLREISLDNYRVEDAGIE---EYSKILPNVRDLDLSRNLFHN--WFPVLKIAEQL 171 (505)
T ss_pred HhhhcCceeEEecHHHHHHHhhhHHhhhheeecCccccccchh---hhhhhCCcceeecchhhhHHh--HHHHHHHHHhc
Confidence 3456666666677777665434457888889988888877654 456678889999999987764 34555666778
Q ss_pred CCccEEEeCCCCCCChhhHHHHHHhhccCCccceeecCCCCCChHHHHHHHHHhhcCCccEEEccCCC-CCCchHHHHHH
Q 000742 973 STLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTN-LGSDGSLQLVE 1051 (1313)
Q Consensus 973 ~~L~~L~Ls~n~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~ 1051 (1313)
++|+.|+||.|.+....+-.. . ..+++|+.|.|+.|+|+...+..+ +...|+|..|+|..|. +. ......
T Consensus 172 p~Le~LNls~Nrl~~~~~s~~-~---~~l~~lK~L~l~~CGls~k~V~~~--~~~fPsl~~L~L~~N~~~~---~~~~~~ 242 (505)
T KOG3207|consen 172 PSLENLNLSSNRLSNFISSNT-T---LLLSHLKQLVLNSCGLSWKDVQWI--LLTFPSLEVLYLEANEIIL---IKATST 242 (505)
T ss_pred ccchhcccccccccCCccccc-h---hhhhhhheEEeccCCCCHHHHHHH--HHhCCcHHHhhhhcccccc---eecchh
Confidence 899999999998532221110 0 145678888888888886655544 3345778888888884 22 122222
Q ss_pred HHhcCCCcccEEEccCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHH---HHHHHhcCCCCceeEEEeecCCCC
Q 000742 1052 SLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGAN---ALASLLMNPQCCLKVLVLSKCQLG 1128 (1313)
Q Consensus 1052 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~---~l~~~l~~~~~~L~~L~Ls~n~i~ 1128 (1313)
.+ .+.|+.|||++|++-+..- ...+..+++|..|+++.|.|.+.... .+...-. -.+|+.|+++.|+|.
T Consensus 243 ~i---~~~L~~LdLs~N~li~~~~---~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~--f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 243 KI---LQTLQELDLSNNNLIDFDQ---GYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHT--FPKLEYLNISENNIR 314 (505)
T ss_pred hh---hhHHhhccccCCccccccc---ccccccccchhhhhccccCcchhcCCCccchhhhcc--cccceeeecccCccc
Confidence 22 2568888888888655421 12345677888888888876632211 1111111 124777777777775
Q ss_pred HHHHHHHHHHhhcCCCccEEEccCCCCChh
Q 000742 1129 LAGVLQLIKALSENDTLEELNLADNASKEL 1158 (1313)
Q Consensus 1129 ~~g~~~l~~~l~~~~~L~~L~Ls~N~i~~~ 1158 (1313)
+.. -...+...++|+.|.+..|.++.+
T Consensus 315 ~w~---sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 315 DWR---SLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred ccc---ccchhhccchhhhhhccccccccc
Confidence 431 223455566777777777776654
No 127
>PLN02789 farnesyltranstransferase
Probab=99.13 E-value=2.2e-09 Score=120.65 Aligned_cols=205 Identities=10% Similarity=-0.013 Sum_probs=167.4
Q ss_pred hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccC
Q 000742 5 EMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRG-EYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEH 83 (1313)
Q Consensus 5 ~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g-~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 83 (1313)
.+..++|+..+.++++.+|....+ ++..|.++...| ++++|+.++.++++..++. ..+++..+.++..+|+
T Consensus 50 ~e~serAL~lt~~aI~lnP~~yta--W~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn------yqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPGNYTV--WHFRRLCLEALDADLEEELDFAEDVAEDNPKN------YQIWHHRRWLAEKLGP 121 (320)
T ss_pred CCCCHHHHHHHHHHHHHCchhHHH--HHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc------hHHhHHHHHHHHHcCc
Confidence 456788999999999999998877 889999999998 6899999999999887543 7789999999999987
Q ss_pred h--HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchh
Q 000742 84 F--KDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSF 161 (1313)
Q Consensus 84 ~--~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~ 161 (1313)
. ++++.++ ++++++.+++- .+|...+.++..+ +++++|++++.++++.
T Consensus 122 ~~~~~el~~~-~kal~~dpkNy------~AW~~R~w~l~~l--------~~~~eeL~~~~~~I~~--------------- 171 (320)
T PLN02789 122 DAANKELEFT-RKILSLDAKNY------HAWSHRQWVLRTL--------GGWEDELEYCHQLLEE--------------- 171 (320)
T ss_pred hhhHHHHHHH-HHHHHhCcccH------HHHHHHHHHHHHh--------hhHHHHHHHHHHHHHH---------------
Confidence 4 7889999 99998877653 5789999999988 8999999999999988
Q ss_pred hHHHHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHH----cCCHHHHHH
Q 000742 162 LKEYIDAHNNIGMLQMEL---DNL----EEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYME----LRMWDKSRE 230 (1313)
Q Consensus 162 ~p~~~~~~~~la~~y~~~---g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~----~g~~~~A~~ 230 (1313)
.|....+|+..+.+.... |.+ ++++++..+++.+.+. ...+|.+++.++.. +++..+|++
T Consensus 172 d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~---------N~SaW~Yl~~ll~~~~~~l~~~~~~~~ 242 (320)
T PLN02789 172 DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPR---------NESPWRYLRGLFKDDKEALVSDPEVSS 242 (320)
T ss_pred CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCC---------CcCHHHHHHHHHhcCCcccccchhHHH
Confidence 234467899999888765 333 5788899999988444 46688999999988 456677888
Q ss_pred HHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh
Q 000742 231 HIEQDIIICKKIEHCQGEAKGYINLGELHYRV 262 (1313)
Q Consensus 231 ~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~ 262 (1313)
.+.+++... +....++..|+.+|...
T Consensus 243 ~~~~~~~~~------~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 243 VCLEVLSKD------SNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHhhccc------CCcHHHHHHHHHHHHhh
Confidence 888877642 36677888899999753
No 128
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1.6e-11 Score=134.04 Aligned_cols=241 Identities=18% Similarity=0.089 Sum_probs=160.2
Q ss_pred EEecCCCCCHHHHHHHHHHHHhcccCccceEEEccCCCCCHHHHHHHHhcccCCCCcCEEEecCCCCChhHHHHHHHHHh
Q 000742 863 LDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILK 942 (1313)
Q Consensus 863 L~Ls~n~l~~~~~~~L~~~l~~~~~~~~l~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 942 (1313)
+.+++-.+.-.|+..++. ......+|+.+.|.++.+...+.. .....|++++.||||+|-|... ..+.++..
T Consensus 98 ~si~nK~vE~iGfDki~a---kQsn~kkL~~IsLdn~~V~~~~~~---~~~k~~~~v~~LdLS~NL~~nw--~~v~~i~e 169 (505)
T KOG3207|consen 98 LSISNKQVEFIGFDKIAA---KQSNLKKLREISLDNYRVEDAGIE---EYSKILPNVRDLDLSRNLFHNW--FPVLKIAE 169 (505)
T ss_pred hhhcCceeEEecHHHHHH---HhhhHHhhhheeecCccccccchh---hhhhhCCcceeecchhhhHHhH--HHHHHHHH
Confidence 556666676677777765 122344577888888888766654 3344579999999999988764 34677788
Q ss_pred cCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCCCCCChhhHHHHHHhhccCCccceeecCCCC-CChHHHHH
Q 000742 943 NCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLK-LSKPVVDR 1021 (1313)
Q Consensus 943 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~-l~~~~~~~ 1021 (1313)
.+|+|+.|+|+.|.+....-.... ...++|+.|.|+.|. ++...+.. .+..+|+|+.|+|..|. +... ...
T Consensus 170 qLp~Le~LNls~Nrl~~~~~s~~~---~~l~~lK~L~l~~CG-ls~k~V~~---~~~~fPsl~~L~L~~N~~~~~~-~~~ 241 (505)
T KOG3207|consen 170 QLPSLENLNLSSNRLSNFISSNTT---LLLSHLKQLVLNSCG-LSWKDVQW---ILLTFPSLEVLYLEANEIILIK-ATS 241 (505)
T ss_pred hcccchhcccccccccCCccccch---hhhhhhheEEeccCC-CCHHHHHH---HHHhCCcHHHhhhhccccccee-cch
Confidence 899999999999987532111111 146789999999999 56554444 44578999999999995 2111 111
Q ss_pred HHHHhhcCCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCCChhHHHHH--HHHHhcCCCccEEEccCCCCC
Q 000742 1022 LCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKF--TASVSLVHGILELNLGGNPIM 1099 (1313)
Q Consensus 1022 l~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l--~~~l~~~~~L~~L~Ls~N~i~ 1099 (1313)
. .-...|++|+|++|++-+..-... ...++.|..|+++.|+|++...... ..-....++|+.|+++.|+|.
T Consensus 242 ~---~i~~~L~~LdLs~N~li~~~~~~~----~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 242 T---KILQTLQELDLSNNNLIDFDQGYK----VGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred h---hhhhHHhhccccCCcccccccccc----cccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 1 112459999999998866431111 1345789999999999877532111 112345789999999999996
Q ss_pred hHHHHHHHHHhcCCCCceeEEEeecCCCCHH
Q 000742 1100 KEGANALASLLMNPQCCLKVLVLSKCQLGLA 1130 (1313)
Q Consensus 1100 ~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~ 1130 (1313)
+- ..+.....- .+|+.|.+..|.|+.+
T Consensus 315 ~w--~sl~~l~~l--~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 315 DW--RSLNHLRTL--ENLKHLRITLNYLNKE 341 (505)
T ss_pred cc--cccchhhcc--chhhhhhccccccccc
Confidence 42 233332221 1488888888888754
No 129
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.4e-10 Score=120.12 Aligned_cols=236 Identities=19% Similarity=0.228 Sum_probs=158.7
Q ss_pred EEEccCCCCCHHHHHHHHhcccCCCCcCEEEecCCCCChhHHHHHHHHHhc-CCCCcEEEeecCCCCHHHHHHHHHHHhc
Q 000742 893 TLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKN-CKVLYSLNIENCSITSRTIQKVADALGA 971 (1313)
Q Consensus 893 ~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 971 (1313)
.||+..-.|.+.....+.. .....+.+....+.+. .+++.+.- -+.|+.|+|++..|+...+.. .|+.
T Consensus 140 ~lDl~~r~i~p~~l~~l~~-----rgV~v~Rlar~~~~~p---rlae~~~~frsRlq~lDLS~s~it~stl~~---iLs~ 208 (419)
T KOG2120|consen 140 TLDLTGRNIHPDVLGRLLS-----RGVIVFRLARSFMDQP---RLAEHFSPFRSRLQHLDLSNSVITVSTLHG---ILSQ 208 (419)
T ss_pred eeccCCCccChhHHHHHHh-----CCeEEEEcchhhhcCc---hhhhhhhhhhhhhHHhhcchhheeHHHHHH---HHHH
Confidence 4455555554444444444 4555566555444443 13333322 235999999999999766555 4678
Q ss_pred CCCccEEEeCCCCCCChhhHHHHHHhhccCCccceeecCCCC-CChHHHHHHHHHhhcCCccEEEccCCCCCCchHHHHH
Q 000742 972 ESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLK-LSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLV 1050 (1313)
Q Consensus 972 ~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 1050 (1313)
|..|+.|+|.++. +++. +...+..+.+|..|+|++|. ++..+...+ +..++.|..|+|+.|.+..+.+..+.
T Consensus 209 C~kLk~lSlEg~~-LdD~----I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll--~~scs~L~~LNlsWc~l~~~~Vtv~V 281 (419)
T KOG2120|consen 209 CSKLKNLSLEGLR-LDDP----IVNTIAKNSNLVRLNLSMCSGFTENALQLL--LSSCSRLDELNLSWCFLFTEKVTVAV 281 (419)
T ss_pred HHhhhhccccccc-cCcH----HHHHHhccccceeeccccccccchhHHHHH--HHhhhhHhhcCchHhhccchhhhHHH
Confidence 9999999999999 5655 45566788999999999876 766655544 33466799999999988776655555
Q ss_pred HHHhcCCCcccEEEccCCC--CChhHHHHHHHHHhcCCCccEEEccCCC-CChHHHHHHHHHhcCCCCceeEEEeecCCC
Q 000742 1051 ESLFSRAQESVKLDLSYCG--LESTCIHKFTASVSLVHGILELNLGGNP-IMKEGANALASLLMNPQCCLKVLVLSKCQL 1127 (1313)
Q Consensus 1051 ~~l~~~~~~L~~L~Ls~n~--l~~~~~~~l~~~l~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i 1127 (1313)
..+. .+|+.|+|+++. +... .++.....+++|.+||||.|. +++.....+.++- .|++|.|+.|..
T Consensus 282 ~his---e~l~~LNlsG~rrnl~~s---h~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~-----~L~~lSlsRCY~ 350 (419)
T KOG2120|consen 282 AHIS---ETLTQLNLSGYRRNLQKS---HLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFN-----YLQHLSLSRCYD 350 (419)
T ss_pred hhhc---hhhhhhhhhhhHhhhhhh---HHHHHHHhCCceeeeccccccccCchHHHHHHhcc-----hheeeehhhhcC
Confidence 4443 679999999986 4444 344445689999999999987 7765455554432 399999999974
Q ss_pred CHHHHHHHHHHhhcCCCccEEEccCCCCChhhhh
Q 000742 1128 GLAGVLQLIKALSENDTLEELNLADNASKELTLQ 1161 (1313)
Q Consensus 1128 ~~~g~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~ 1161 (1313)
-... ..-.+...|+|.+|++.+. +.|...+
T Consensus 351 i~p~---~~~~l~s~psl~yLdv~g~-vsdt~me 380 (419)
T KOG2120|consen 351 IIPE---TLLELNSKPSLVYLDVFGC-VSDTTME 380 (419)
T ss_pred CChH---HeeeeccCcceEEEEeccc-cCchHHH
Confidence 3211 1123566789999999886 3343333
No 130
>PLN02789 farnesyltranstransferase
Probab=99.09 E-value=5.8e-09 Score=117.33 Aligned_cols=199 Identities=10% Similarity=-0.008 Sum_probs=161.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHcc-ChHHHHHHHHHHHHHHHHHhcCHHHHH
Q 000742 31 ANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLE-HFKDALIYQVKKHLELAKDASDLVEQQ 109 (1313)
Q Consensus 31 ~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g-~~~~A~~~~~~kal~l~~~~~~~~~~a 109 (1313)
+..+-.++...+.+++|+..+.+++++.+.. ..++...|.++..+| ++++|+..+ .++++..++..
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~lnP~~------ytaW~~R~~iL~~L~~~l~eeL~~~-~~~i~~npkny------ 106 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLNPGN------YTVWHFRRLCLEALDADLEEELDFA-EDVAEDNPKNY------ 106 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCchh------HHHHHHHHHHHHHcchhHHHHHHHH-HHHHHHCCcch------
Confidence 4455556777889999999999999998554 789999999999998 689999999 99999877653
Q ss_pred HHHHHHHHHHHHHhccCCcchhh--HHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHH
Q 000742 110 RACTQLGRTYYEMFLRSDDDHYS--IRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKK 187 (1313)
Q Consensus 110 ~a~~~lg~~y~~l~~~~~~~~~~--~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~ 187 (1313)
.+|+..+.++..+ +. +++++.++.+++++ .|....+|...+.++...|++++|++
T Consensus 107 qaW~~R~~~l~~l--------~~~~~~~el~~~~kal~~---------------dpkNy~AW~~R~w~l~~l~~~~eeL~ 163 (320)
T PLN02789 107 QIWHHRRWLAEKL--------GPDAANKELEFTRKILSL---------------DAKNYHAWSHRQWVLRTLGGWEDELE 163 (320)
T ss_pred HHhHHHHHHHHHc--------CchhhHHHHHHHHHHHHh---------------CcccHHHHHHHHHHHHHhhhHHHHHH
Confidence 4688888888766 44 36778888888877 44668899999999999999999999
Q ss_pred HHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHH
Q 000742 188 FLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMEL---RMW----DKSREHIEQDIIICKKIEHCQGEAKGYINLGELHY 260 (1313)
Q Consensus 188 ~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~---g~~----~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~ 260 (1313)
++.++++. ++....+|+.++.+.... |.+ ++++++..+++.+.+ ....+|..++.++.
T Consensus 164 ~~~~~I~~---------d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P------~N~SaW~Yl~~ll~ 228 (320)
T PLN02789 164 YCHQLLEE---------DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANP------RNESPWRYLRGLFK 228 (320)
T ss_pred HHHHHHHH---------CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCC------CCcCHHHHHHHHHh
Confidence 99999998 334567899999888776 333 578899999999876 77788899999988
Q ss_pred H----hcCHHHHHHHHHHHHHHHH
Q 000742 261 R----VQKYDEAILCYQKALNLAQ 280 (1313)
Q Consensus 261 ~----~g~~~~A~~~~~kal~~~~ 280 (1313)
. .++..+|+..+.+++...+
T Consensus 229 ~~~~~l~~~~~~~~~~~~~~~~~~ 252 (320)
T PLN02789 229 DDKEALVSDPEVSSVCLEVLSKDS 252 (320)
T ss_pred cCCcccccchhHHHHHHHhhcccC
Confidence 7 4566789999888777433
No 131
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=1.3e-06 Score=99.59 Aligned_cols=394 Identities=13% Similarity=0.011 Sum_probs=222.7
Q ss_pred hhhHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccC
Q 000742 5 EMQMSEAKRAYRSAKEEGNR-QEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEH 83 (1313)
Q Consensus 5 ~~~~~~A~~~l~~a~~~~~~-~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 83 (1313)
++.|++|....+ .+.. .......+..+.+.++.+..++|++.++-. + .....+....|++++++|+
T Consensus 59 ~~ky~~ALk~ik----k~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~-~--------~~~~~ll~L~AQvlYrl~~ 125 (652)
T KOG2376|consen 59 LDKYEDALKLIK----KNGALLVINSFFFEKAYCEYRLNKLDEALKTLKGL-D--------RLDDKLLELRAQVLYRLER 125 (652)
T ss_pred hhHHHHHHHHHH----hcchhhhcchhhHHHHHHHHHcccHHHHHHHHhcc-c--------ccchHHHHHHHHHHHHHhh
Confidence 456666663333 2222 112222368899999999999999998821 1 1114577788999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhcC-------------------------HHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHH
Q 000742 84 FKDALIYQVKKHLELAKDASD-------------------------LVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKK 138 (1313)
Q Consensus 84 ~~~A~~~~~~kal~l~~~~~~-------------------------~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~ 138 (1313)
|++|++.| +..++-..+..+ .......+++.|-++... |+|.+|++
T Consensus 126 ydealdiY-~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~--------gky~qA~e 196 (652)
T KOG2376|consen 126 YDEALDIY-QHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIEN--------GKYNQAIE 196 (652)
T ss_pred HHHHHHHH-HHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhc--------ccHHHHHH
Confidence 99999999 655332111100 011224567778888766 99999999
Q ss_pred HHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHH
Q 000742 139 YFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNV 218 (1313)
Q Consensus 139 ~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~ 218 (1313)
.+++|++++.+.-.........+..+...+...++.++..+|+.++|...|...++... .+.+..+.+-+|+-.+
T Consensus 197 lL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~-----~D~~~~Av~~NNLva~ 271 (652)
T KOG2376|consen 197 LLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP-----ADEPSLAVAVNNLVAL 271 (652)
T ss_pred HHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC-----CCchHHHHHhcchhhh
Confidence 99999999887544443334456667888999999999999999999999999988743 3556677777777544
Q ss_pred HHHcCCHH-HHHHHHHHHHHHHHHhc----hhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHH
Q 000742 219 YMELRMWD-KSREHIEQDIIICKKIE----HCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQID 293 (1313)
Q Consensus 219 y~~~g~~~-~A~~~~~kal~~~~~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~ 293 (1313)
-....=++ .++..++.-.....+.- .......++.+.+.+.+..+.-+++.+....--...|...-.........
T Consensus 272 ~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~ 351 (652)
T KOG2376|consen 272 SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATK 351 (652)
T ss_pred ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHH
Confidence 33332222 12222221111111000 01233345556666655555555444433221111111100000000000
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 000742 294 QNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRI---- 369 (1313)
Q Consensus 294 ~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i---- 369 (1313)
.....+.++.+.+... ..+.+.... ..+-.++.....++++..|++.+......
T Consensus 352 ~~~~~~~ka~e~L~~~----------------~~~~p~~s~------~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss 409 (652)
T KOG2376|consen 352 VREKKHKKAIELLLQF----------------ADGHPEKSK------VVLLLRAQLKISQGNPEVALEILSLFLESWKSS 409 (652)
T ss_pred HHHHHHhhhHHHHHHH----------------hccCCchhH------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhh
Confidence 0000111111111111 111111111 11222344455677788888777744421
Q ss_pred HHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCc-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000742 370 ASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNL-EGQALAKVNMGNVLDSNGDWAGALDAFQEGYR 448 (1313)
Q Consensus 370 ~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~-~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~ 448 (1313)
.......| .+-..+-..|+..++-+-|...+.+|+......... ......+...+..-.+.|+-++|...+++.++
T Consensus 410 ~~~~~~~P---~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k 486 (652)
T KOG2376|consen 410 ILEAKHLP---GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK 486 (652)
T ss_pred hhhhccCh---hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH
Confidence 11223333 334445556778888777888888888777654332 23334566677777788999999999999887
Q ss_pred HH
Q 000742 449 IA 450 (1313)
Q Consensus 449 i~ 450 (1313)
..
T Consensus 487 ~n 488 (652)
T KOG2376|consen 487 FN 488 (652)
T ss_pred hC
Confidence 63
No 132
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.08 E-value=1.1e-08 Score=126.33 Aligned_cols=258 Identities=12% Similarity=0.065 Sum_probs=167.3
Q ss_pred cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhc
Q 000742 24 RQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDAS 103 (1313)
Q Consensus 24 ~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~ 103 (1313)
.+....++..+...|...+++++|++..+.+++..+ .....|+.+|.+|...+++.+|.-. .++.+.+...
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P------~~i~~yy~~G~l~~q~~~~~~~~lv---~~l~~~~~~~ 97 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHK------KSISALYISGILSLSRRPLNDSNLL---NLIDSFSQNL 97 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC------cceehHHHHHHHHHhhcchhhhhhh---hhhhhccccc
Confidence 333444477888888888888888888887777653 3377888888888888886665432 3344333332
Q ss_pred CHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHH
Q 000742 104 DLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLE 183 (1313)
Q Consensus 104 ~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~ 183 (1313)
++ .+++++-..+.. .+..-.+++.+|.+|..+|+++
T Consensus 98 ----------------------------~~-~~ve~~~~~i~~---------------~~~~k~Al~~LA~~Ydk~g~~~ 133 (906)
T PRK14720 98 ----------------------------KW-AIVEHICDKILL---------------YGENKLALRTLAEAYAKLNENK 133 (906)
T ss_pred ----------------------------ch-hHHHHHHHHHHh---------------hhhhhHHHHHHHHHHHHcCChH
Confidence 22 222222222111 0122347788888888888888
Q ss_pred HHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhc
Q 000742 184 EAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQ 263 (1313)
Q Consensus 184 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g 263 (1313)
+|...|++++++ ++..+.++.++|..|... +.++|++++.+|+.. |...+
T Consensus 134 ka~~~yer~L~~---------D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--------------------~i~~k 183 (906)
T PRK14720 134 KLKGVWERLVKA---------DRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR--------------------FIKKK 183 (906)
T ss_pred HHHHHHHHHHhc---------CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--------------------HHhhh
Confidence 888888888887 344677888888888888 888888888888765 45556
Q ss_pred CHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHH
Q 000742 264 KYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASL 343 (1313)
Q Consensus 264 ~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l 343 (1313)
+|.++.+++++.+...+...+....+-. ++
T Consensus 184 q~~~~~e~W~k~~~~~~~d~d~f~~i~~--------------------------ki------------------------ 213 (906)
T PRK14720 184 QYVGIEEIWSKLVHYNSDDFDFFLRIER--------------------------KV------------------------ 213 (906)
T ss_pred cchHHHHHHHHHHhcCcccchHHHHHHH--------------------------HH------------------------
Confidence 7788888888777776654432111000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHH
Q 000742 344 DRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAK 423 (1313)
Q Consensus 344 ~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~ 423 (1313)
.... .....+..+.-+=..|...++|++++.+++.++++.+ ....+.
T Consensus 214 --------------------------~~~~-~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~------~n~~a~ 260 (906)
T PRK14720 214 --------------------------LGHR-EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDN------KNNKAR 260 (906)
T ss_pred --------------------------Hhhh-ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCC------cchhhH
Confidence 0000 0112235555567788888999999999999998765 344568
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000742 424 VNMGNVLDSNGDWAGALDAFQEGYRIA 450 (1313)
Q Consensus 424 ~~lg~~y~~~g~~~~A~~~~~kAl~i~ 450 (1313)
..++.+|. +.|.. ...|++++++.
T Consensus 261 ~~l~~~y~--~kY~~-~~~~ee~l~~s 284 (906)
T PRK14720 261 EELIRFYK--EKYKD-HSLLEDYLKMS 284 (906)
T ss_pred HHHHHHHH--HHccC-cchHHHHHHHh
Confidence 88888888 56655 77778777765
No 133
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.02 E-value=2.5e-05 Score=86.88 Aligned_cols=427 Identities=12% Similarity=0.046 Sum_probs=256.0
Q ss_pred HHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHH-HHccChHHHHHHHHHHHHHHHHHh
Q 000742 26 EEARWANVIGDILKNRG--EYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVY-LRLEHFKDALIYQVKKHLELAKDA 102 (1313)
Q Consensus 26 ~~a~~~~~lg~~y~~~g--~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y-~~~g~~~~A~~~~~~kal~l~~~~ 102 (1313)
..+.++..+|+.+...| +...+++.++......+. ....+.++..+|.++ ....+++.|..++ ++|..+....
T Consensus 5 Ava~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is---~~veart~LqLg~lL~~yT~N~elAksHL-ekA~~i~~~i 80 (629)
T KOG2300|consen 5 AVAEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQIS---FLVEARTHLQLGALLLRYTKNVELAKSHL-EKAWLISKSI 80 (629)
T ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCCh---HHHHHHHHHHHHHHHHHHhccHHHHHHHH-HHHHHHHccc
Confidence 34566788899999998 888899888866554321 123467778888764 4568999999999 9999998877
Q ss_pred cCH-HHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCC
Q 000742 103 SDL-VEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDN 181 (1313)
Q Consensus 103 ~~~-~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~ 181 (1313)
+.. .....++..++.+|... . ..+..|...+++|+++.+.... ..-...+.+|.++....+
T Consensus 81 p~fydvKf~a~SlLa~lh~~~------~-~s~~~~KalLrkaielsq~~p~-----------wsckllfQLaql~~idkD 142 (629)
T KOG2300|consen 81 PSFYDVKFQAASLLAHLHHQL------A-QSFPPAKALLRKAIELSQSVPY-----------WSCKLLFQLAQLHIIDKD 142 (629)
T ss_pred ccHHhhhhHHHHHHHHHHHHh------c-CCCchHHHHHHHHHHHhcCCch-----------hhHHHHHHHHHHHhhhcc
Confidence 665 33456778899999876 1 2788899999999999665421 335678899999999999
Q ss_pred HHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-chh---hhHHHHHHHHHH
Q 000742 182 LEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKI-EHC---QGEAKGYINLGE 257 (1313)
Q Consensus 182 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~-~~~---~~~~~~~~~la~ 257 (1313)
+..|++.+.-.-+.++.. .............+.+.....+..+-.+....+-++.... .|+ +..-..|..+-.
T Consensus 143 ~~sA~elLavga~sAd~~---~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql 219 (629)
T KOG2300|consen 143 FPSALELLAVGAESADHI---CFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQL 219 (629)
T ss_pred chhHHHHHhccccccchh---hhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHH
Confidence 999999865554443331 1121222222333444555555555556666655555443 121 222334445554
Q ss_pred HH-HHhcCHHHHHHHHHHHHHHHHHccCh---h-------------------HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 000742 258 LH-YRVQKYDEAILCYQKALNLAQSMEDE---D-------------------ALASQIDQNIETVKKAIEVMDELKKEEQ 314 (1313)
Q Consensus 258 ~~-~~~g~~~~A~~~~~kal~~~~~~~~~---~-------------------~~~~~~~~~lg~~~~a~~~~~~a~~~~~ 314 (1313)
.| ...|+...+...+++.-+-....... + .+-+.+|...-....-.++|+++.++..
T Consensus 220 ~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tD 299 (629)
T KOG2300|consen 220 SYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTD 299 (629)
T ss_pred HHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHH
Confidence 44 45677666666555433222211110 0 0112223332222234455555555544
Q ss_pred HHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----chhhHHHHHHHHHHH
Q 000742 315 NLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCD----KGKLSDSFLVIGESY 390 (1313)
Q Consensus 315 ~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~----~~~~a~~~~~lg~~y 390 (1313)
.+......+....+ ....-..-+...++.++......+++.+|++-............. +...+.++..+|...
T Consensus 300 e~i~q~eklkq~d~--~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys 377 (629)
T KOG2300|consen 300 EAIKQTEKLKQADL--MSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYS 377 (629)
T ss_pred HHHHHHhhcccccc--hhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHh
Confidence 44333222222111 111112223345566666666667777777666666665554433 223456666667666
Q ss_pred HHhhCHHHHHHHHHHHHHHHHHh------------------------------CC--------chhHHHHHHHHHHHHHH
Q 000742 391 QKLRKFNKAIKWYTKSWEMYKSI------------------------------GN--------LEGQALAKVNMGNVLDS 432 (1313)
Q Consensus 391 ~~~g~~~~A~~~~~kal~l~~~~------------------------------~~--------~~~~~~~~~~lg~~y~~ 432 (1313)
...+.|+.|...|..|.+..... +. ....+.+++..|...+.
T Consensus 378 ~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~ 457 (629)
T KOG2300|consen 378 HSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFK 457 (629)
T ss_pred hhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 66777777777776665533211 00 12345677888888889
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhHHHHHHhhcCHHH
Q 000742 433 NGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMIRFDNIEE 479 (1313)
Q Consensus 433 ~g~~~~A~~~~~kAl~i~~~~~~~~~~~~al~~L~~~~~~~~~~~~~ 479 (1313)
++++.||...+.+.++++...+..+..+..+-.|+.+....++..+.
T Consensus 458 qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es 504 (629)
T KOG2300|consen 458 QNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVES 504 (629)
T ss_pred hccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 99999999999999999866666666666666777766555444443
No 134
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.98 E-value=2.5e-07 Score=100.95 Aligned_cols=312 Identities=16% Similarity=0.046 Sum_probs=202.3
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHH
Q 000742 27 EARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLV 106 (1313)
Q Consensus 27 ~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~ 106 (1313)
.+.....-|..-...|+|.+|.+...++-+.. +.-...|..-+.+-..+|+++.|-.|+ .++-+..++..-
T Consensus 83 ra~~~~~egl~~l~eG~~~qAEkl~~rnae~~------e~p~l~~l~aA~AA~qrgd~~~an~yL-~eaae~~~~~~l-- 153 (400)
T COG3071 83 RARKALNEGLLKLFEGDFQQAEKLLRRNAEHG------EQPVLAYLLAAEAAQQRGDEDRANRYL-AEAAELAGDDTL-- 153 (400)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcC------cchHHHHHHHHHHHHhcccHHHHHHHH-HHHhccCCCchH--
Confidence 34445566777778899999999988854432 222566777788889999999999999 888777544332
Q ss_pred HHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHH
Q 000742 107 EQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAK 186 (1313)
Q Consensus 107 ~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~ 186 (1313)
..+...+++.... ++++.|..-..++++. .|....+......+|...|++.+..
T Consensus 154 ---~v~ltrarlll~~--------~d~~aA~~~v~~ll~~---------------~pr~~~vlrLa~r~y~~~g~~~~ll 207 (400)
T COG3071 154 ---AVELTRARLLLNR--------RDYPAARENVDQLLEM---------------TPRHPEVLRLALRAYIRLGAWQALL 207 (400)
T ss_pred ---HHHHHHHHHHHhC--------CCchhHHHHHHHHHHh---------------CcCChHHHHHHHHHHHHhccHHHHH
Confidence 3455666777655 9999999999988877 3455788899999999999999998
Q ss_pred HHHHHHHhHhhhhccCCCchHHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcC
Q 000742 187 KFLIRGLEICNEEEVSEDDDGRSRLHHNLGNV--YMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQK 264 (1313)
Q Consensus 187 ~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~--y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~ 264 (1313)
.++.+..+. .- .......-+.+.+.. ....++-+.+....+---.+-.+ ....+.....++.-+...|+
T Consensus 208 ~~l~~L~ka-~~-----l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~---lr~~p~l~~~~a~~li~l~~ 278 (400)
T COG3071 208 AILPKLRKA-GL-----LSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK---LRNDPELVVAYAERLIRLGD 278 (400)
T ss_pred HHHHHHHHc-cC-----CChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH---hhcChhHHHHHHHHHHHcCC
Confidence 887776543 11 111122222222221 22222222222211111111111 11335566677788889999
Q ss_pred HHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHH
Q 000742 265 YDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLD 344 (1313)
Q Consensus 265 ~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~ 344 (1313)
+++|.+..+++++..- +.. ... -.+. . ..+++
T Consensus 279 ~~~A~~~i~~~Lk~~~---D~~-L~~----~~~~----------l----------------~~~d~-------------- 310 (400)
T COG3071 279 HDEAQEIIEDALKRQW---DPR-LCR----LIPR----------L----------------RPGDP-------------- 310 (400)
T ss_pred hHHHHHHHHHHHHhcc---Chh-HHH----HHhh----------c----------------CCCCc--------------
Confidence 9999999998887542 211 000 0000 0 01111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHH
Q 000742 345 RLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKV 424 (1313)
Q Consensus 345 ~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~ 424 (1313)
.+-++..++ .+...+..+..+..+|..|++.+.+.+|..+|+.|++..+ .+..+.
T Consensus 311 ------------~~l~k~~e~------~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-------s~~~~~ 365 (400)
T COG3071 311 ------------EPLIKAAEK------WLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRP-------SASDYA 365 (400)
T ss_pred ------------hHHHHHHHH------HHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-------ChhhHH
Confidence 111111111 2234455669999999999999999999999999997643 456688
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q 000742 425 NMGNVLDSNGDWAGALDAFQEGYRIAVEANL 455 (1313)
Q Consensus 425 ~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~ 455 (1313)
.+|.+|.+.|+.++|.+.+++++........
T Consensus 366 ~la~~~~~~g~~~~A~~~r~e~L~~~~~~~~ 396 (400)
T COG3071 366 ELADALDQLGEPEEAEQVRREALLLTRQPNL 396 (400)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999977655443
No 135
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.98 E-value=5.5e-09 Score=103.90 Aligned_cols=117 Identities=11% Similarity=0.063 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHH
Q 000742 137 KKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLG 216 (1313)
Q Consensus 137 ~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg 216 (1313)
...|++++++ .|. .+..+|.++...|++++|+.+|++++.+ .|....++..+|
T Consensus 13 ~~~~~~al~~---------------~p~---~~~~~g~~~~~~g~~~~A~~~~~~al~~---------~P~~~~a~~~lg 65 (144)
T PRK15359 13 EDILKQLLSV---------------DPE---TVYASGYASWQEGDYSRAVIDFSWLVMA---------QPWSWRAHIALA 65 (144)
T ss_pred HHHHHHHHHc---------------CHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHc---------CCCcHHHHHHHH
Confidence 4567777776 233 2567899999999999999999999988 444688999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChh
Q 000742 217 NVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDED 286 (1313)
Q Consensus 217 ~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~ 286 (1313)
.++...|++++|+..|++++.+.+ ..+.+++++|.++...|++++|+..|++++++.|.....+
T Consensus 66 ~~~~~~g~~~~A~~~y~~Al~l~p------~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~ 129 (144)
T PRK15359 66 GTWMMLKEYTTAINFYGHALMLDA------SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWS 129 (144)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCC------CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 999999999999999999999866 8899999999999999999999999999999998776544
No 136
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=2e-07 Score=98.78 Aligned_cols=345 Identities=13% Similarity=0.106 Sum_probs=197.4
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 000742 38 LKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGR 117 (1313)
Q Consensus 38 y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~ 117 (1313)
+....+|.-|+..++-..... .......-.++|.||+.+|+|++|+..| +-+.+ .+..+ +....++|.
T Consensus 32 fls~rDytGAislLefk~~~~-----~EEE~~~~lWia~C~fhLgdY~~Al~~Y-~~~~~--~~~~~----~el~vnLAc 99 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLD-----REEEDSLQLWIAHCYFHLGDYEEALNVY-TFLMN--KDDAP----AELGVNLAC 99 (557)
T ss_pred HHhcccchhHHHHHHHhhccc-----hhhhHHHHHHHHHHHHhhccHHHHHHHH-HHHhc--cCCCC----cccchhHHH
Confidence 345678999998887665432 2333567788999999999999999999 66655 22221 346788999
Q ss_pred HHHHHhccCCcchhhHHHHHHHHHHH----------HHHHHHhccCCCCC-cchhhHHHHHHHHHHHHHHHHcCCHHHHH
Q 000742 118 TYYEMFLRSDDDHYSIRNAKKYFKSA----------MKLAQTLKENPATS-RSSFLKEYIDAHNNIGMLQMELDNLEEAK 186 (1313)
Q Consensus 118 ~y~~l~~~~~~~~~~~~~A~~~~~~A----------l~l~~~~~~~~~~~-~~~~~p~~~~~~~~la~~y~~~g~~~~A~ 186 (1313)
++..+ |.|.+|.....+| ..++.++++..... ..+...+..+-...+|.+++..-.|++|+
T Consensus 100 c~FyL--------g~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAI 171 (557)
T KOG3785|consen 100 CKFYL--------GQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAI 171 (557)
T ss_pred HHHHH--------HHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHH
Confidence 99988 9999998887664 22233333321000 00111122344566788888888999999
Q ss_pred HHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHH
Q 000742 187 KFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYD 266 (1313)
Q Consensus 187 ~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 266 (1313)
+.|.+.+.- .+.......++|.+|+++.-|+-+.+.+.--+...+ +...+....+..+++.=+-.
T Consensus 172 dvYkrvL~d---------n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~p------dStiA~NLkacn~fRl~ngr 236 (557)
T KOG3785|consen 172 DVYKRVLQD---------NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFP------DSTIAKNLKACNLFRLINGR 236 (557)
T ss_pred HHHHHHHhc---------ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCC------CcHHHHHHHHHHHhhhhccc
Confidence 999998765 444566778899999999988888777766555544 44445555554444432222
Q ss_pred HHHHHHH----------------------------HHHHHHHHcc----ChhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 000742 267 EAILCYQ----------------------------KALNLAQSME----DEDALASQIDQNIETVKKAIEVMDELKKEEQ 314 (1313)
Q Consensus 267 ~A~~~~~----------------------------kal~~~~~~~----~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~ 314 (1313)
.|..-.+ -|++..|... .....+...|.+.+++.+|.....+..
T Consensus 237 ~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~---- 312 (557)
T KOG3785|consen 237 TAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD---- 312 (557)
T ss_pred hhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcC----
Confidence 2221111 1222222211 111111223344445555544443321
Q ss_pred HHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhh
Q 000742 315 NLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLR 394 (1313)
Q Consensus 315 ~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g 394 (1313)
..++.+ ++-.+.....+|..........-|. +...+...-+..-+...-...+|.+++-..
T Consensus 313 ------------PttP~E---yilKgvv~aalGQe~gSreHlKiAq----qffqlVG~Sa~ecDTIpGRQsmAs~fFL~~ 373 (557)
T KOG3785|consen 313 ------------PTTPYE---YILKGVVFAALGQETGSREHLKIAQ----QFFQLVGESALECDTIPGRQSMASYFFLSF 373 (557)
T ss_pred ------------CCChHH---HHHHHHHHHHhhhhcCcHHHHHHHH----HHHHHhcccccccccccchHHHHHHHHHHH
Confidence 111211 1112222333333222222222222 222222222222222333455778888888
Q ss_pred CHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000742 395 KFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEG 446 (1313)
Q Consensus 395 ~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kA 446 (1313)
+|++-+.|+...-..+- ......+++|+++...|+|.+|.+.|-+.
T Consensus 374 qFddVl~YlnSi~sYF~------NdD~Fn~N~AQAk~atgny~eaEelf~~i 419 (557)
T KOG3785|consen 374 QFDDVLTYLNSIESYFT------NDDDFNLNLAQAKLATGNYVEAEELFIRI 419 (557)
T ss_pred HHHHHHHHHHHHHHHhc------CcchhhhHHHHHHHHhcChHHHHHHHhhh
Confidence 99999988765544432 33455789999999999999999887653
No 137
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.94 E-value=1.3e-08 Score=107.04 Aligned_cols=125 Identities=15% Similarity=0.204 Sum_probs=107.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHH
Q 000742 131 YSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSR 210 (1313)
Q Consensus 131 ~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 210 (1313)
++.++++..++++++. .|..+..|..+|.+|...|++++|+..|++|+++.+ ....
T Consensus 53 ~~~~~~i~~l~~~L~~---------------~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P---------~~~~ 108 (198)
T PRK10370 53 QTPEAQLQALQDKIRA---------------NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG---------ENAE 108 (198)
T ss_pred hhHHHHHHHHHHHHHH---------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---------CCHH
Confidence 6778888888888877 456688999999999999999999999999999843 3577
Q ss_pred HHHHHHHH-HHHcCC--HHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccCh
Q 000742 211 LHHNLGNV-YMELRM--WDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDE 285 (1313)
Q Consensus 211 ~~~~lg~~-y~~~g~--~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~ 285 (1313)
++..+|.+ |...|+ +++|.+.++++++..+ ....++..+|..++..|++++|+.+++++++..+...+.
T Consensus 109 ~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP------~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 109 LYAALATVLYYQAGQHMTPQTREMIDKALALDA------NEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 88999997 467787 5999999999999976 778899999999999999999999999999998875543
No 138
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.94 E-value=7e-06 Score=94.15 Aligned_cols=282 Identities=11% Similarity=0.085 Sum_probs=173.6
Q ss_pred HcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHH
Q 000742 178 ELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGE 257 (1313)
Q Consensus 178 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~ 257 (1313)
..|+..+-+..|.+|+...... .........|..+|..|...|+.+.|...|++|.+..= +...+.+.+|...|.
T Consensus 359 ~e~~~~~~i~tyteAv~~vdP~---ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y--~~v~dLa~vw~~wae 433 (835)
T KOG2047|consen 359 YEGNAAEQINTYTEAVKTVDPK---KAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY--KTVEDLAEVWCAWAE 433 (835)
T ss_pred hcCChHHHHHHHHHHHHccCcc---cCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc--cchHHHHHHHHHHHH
Confidence 3567788888888888765432 22334567889999999999999999999999987632 223467889999999
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHHH-----ccChhHH------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000742 258 LHYRVQKYDEAILCYQKALNLAQS-----MEDEDAL------ASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIA 326 (1313)
Q Consensus 258 ~~~~~g~~~~A~~~~~kal~~~~~-----~~~~~~~------~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~ 326 (1313)
.-.+..+++.|++..+.|..+-.. ..+.... ...++....++.++++-++.....+..+..+.
T Consensus 434 mElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLr------ 507 (835)
T KOG2047|consen 434 MELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLR------ 507 (835)
T ss_pred HHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh------
Confidence 999999999999999998754221 0111111 12244445566666666655554444444332
Q ss_pred hCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHH---HHHHHHHHhhCHHHHHHHH
Q 000742 327 KGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFL---VIGESYQKLRKFNKAIKWY 403 (1313)
Q Consensus 327 ~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~---~lg~~y~~~g~~~~A~~~~ 403 (1313)
..+|.- ..+.+.....-.-++++.+.|++.+.+++ .|...+++. .....-+.-...+.|...|
T Consensus 508 iaTPqi----------i~NyAmfLEeh~yfeesFk~YErgI~LFk----~p~v~diW~tYLtkfi~rygg~klEraRdLF 573 (835)
T KOG2047|consen 508 IATPQI----------IINYAMFLEEHKYFEESFKAYERGISLFK----WPNVYDIWNTYLTKFIKRYGGTKLERARDLF 573 (835)
T ss_pred cCCHHH----------HHHHHHHHHhhHHHHHHHHHHHcCCccCC----CccHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 112221 12233333444555666666666665542 343444443 3333334445789999999
Q ss_pred HHHHHHHHHhCCchhHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhHHH-HHHhhcCHHHHH
Q 000742 404 TKSWEMYKSIGNLEGQA-LAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYS-HMIRFDNIEEAR 481 (1313)
Q Consensus 404 ~kal~l~~~~~~~~~~~-~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~~~~~~al~~L~~~-~~~~~~~~~~a~ 481 (1313)
++|++.++ +..+ .+|...|..-.+-|--..|+..|++|-.- -+..+.-.++++-.. .....|-...-.
T Consensus 574 EqaL~~Cp-----p~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-----v~~a~~l~myni~I~kaae~yGv~~TR~ 643 (835)
T KOG2047|consen 574 EQALDGCP-----PEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-----VKEAQRLDMYNIYIKKAAEIYGVPRTRE 643 (835)
T ss_pred HHHHhcCC-----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHHHhCCcccHH
Confidence 99998665 3333 34566677777778888888888885432 122222233333221 222445566667
Q ss_pred HHHHHHHHHHhhh
Q 000742 482 RLQHEIDKLKESK 494 (1313)
Q Consensus 482 ~~~e~~~~l~~s~ 494 (1313)
-|+++|+.|.++.
T Consensus 644 iYekaIe~Lp~~~ 656 (835)
T KOG2047|consen 644 IYEKAIESLPDSK 656 (835)
T ss_pred HHHHHHHhCChHH
Confidence 7888888887665
No 139
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.94 E-value=1.4e-11 Score=116.80 Aligned_cols=151 Identities=16% Similarity=0.103 Sum_probs=87.7
Q ss_pred CcccEEEccCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhcCCCCceeEEEeecCCCCHHHHHHHHH
Q 000742 1058 QESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIK 1137 (1313)
Q Consensus 1058 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~ 1137 (1313)
..++.|.||+|.++.. +..+..+.+|+.|++++|+|.+ -+..++.+. +|+.|+++-|.+. .++.
T Consensus 33 s~ITrLtLSHNKl~~v-----ppnia~l~nlevln~~nnqie~-lp~~issl~-----klr~lnvgmnrl~-----~lpr 96 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVV-----PPNIAELKNLEVLNLSNNQIEE-LPTSISSLP-----KLRILNVGMNRLN-----ILPR 96 (264)
T ss_pred hhhhhhhcccCceeec-----CCcHHHhhhhhhhhcccchhhh-cChhhhhch-----hhhheecchhhhh-----cCcc
Confidence 3456666666666543 3344455677777777777763 344555443 3777777777665 3677
Q ss_pred HhhcCCCccEEEccCCCCChh---hhhhhcccccccCCcccccccccccccccccccccccccCCCCcccccccCCccch
Q 000742 1138 ALSENDTLEELNLADNASKEL---TLQQNLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIR 1214 (1313)
Q Consensus 1138 ~l~~~~~L~~L~Ls~N~i~~~---~~~~~l~~l~~~~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 1214 (1313)
.|+..+.|+.|||++|++.+. |-.+.+.+|+.+.|..|-+.-+| ..++++++|++|.+.+|.+-
T Consensus 97 gfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp-------------~dvg~lt~lqil~lrdndll 163 (264)
T KOG0617|consen 97 GFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILP-------------PDVGKLTNLQILSLRDNDLL 163 (264)
T ss_pred ccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCC-------------hhhhhhcceeEEeeccCchh
Confidence 788888888888888887765 33333355555555555444433 34556666666666666664
Q ss_pred hhhccccCCCCcccccccCCccchhhH
Q 000742 1215 VESAASGFDNSCTSSCQKNSSFECQFV 1241 (1313)
Q Consensus 1215 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 1241 (1313)
.++.. -.-.+.|+.|.+.+|+++
T Consensus 164 ~lpke----ig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 164 SLPKE----IGDLTRLRELHIQGNRLT 186 (264)
T ss_pred hCcHH----HHHHHHHHHHhcccceee
Confidence 44221 011235555555555544
No 140
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.92 E-value=8.9e-09 Score=102.42 Aligned_cols=126 Identities=14% Similarity=0.008 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHH
Q 000742 88 LIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYID 167 (1313)
Q Consensus 88 ~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~ 167 (1313)
..++ ++++++.|.. ++.+|.++... |++++|+.+|++++.+ .|....
T Consensus 13 ~~~~-~~al~~~p~~---------~~~~g~~~~~~--------g~~~~A~~~~~~al~~---------------~P~~~~ 59 (144)
T PRK15359 13 EDIL-KQLLSVDPET---------VYASGYASWQE--------GDYSRAVIDFSWLVMA---------------QPWSWR 59 (144)
T ss_pred HHHH-HHHHHcCHHH---------HHHHHHHHHHc--------CCHHHHHHHHHHHHHc---------------CCCcHH
Confidence 4567 8899888763 45678888877 9999999999999887 456689
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhh
Q 000742 168 AHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQG 247 (1313)
Q Consensus 168 ~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~ 247 (1313)
++..+|.++...|++++|+..|++++++ .+..+.+++++|.++...|++++|+..|++++++.+ .
T Consensus 60 a~~~lg~~~~~~g~~~~A~~~y~~Al~l---------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p------~ 124 (144)
T PRK15359 60 AHIALAGTWMMLKEYTTAINFYGHALML---------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSY------A 124 (144)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhc---------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------C
Confidence 9999999999999999999999999998 344678999999999999999999999999999977 6
Q ss_pred HHHHHHHHHHHHHH
Q 000742 248 EAKGYINLGELHYR 261 (1313)
Q Consensus 248 ~~~~~~~la~~~~~ 261 (1313)
.+..+.++|.+...
T Consensus 125 ~~~~~~~~~~~~~~ 138 (144)
T PRK15359 125 DASWSEIRQNAQIM 138 (144)
T ss_pred ChHHHHHHHHHHHH
Confidence 66777777766544
No 141
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.90 E-value=2.1e-05 Score=87.07 Aligned_cols=418 Identities=10% Similarity=-0.013 Sum_probs=238.3
Q ss_pred CccchhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHH
Q 000742 1 MGRDEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLR 80 (1313)
Q Consensus 1 m~~~~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~ 80 (1313)
|....|++..|.++|++-.+..|+.. | +...-..-...++.+.|...|++-+-.- .....+...+..-.+
T Consensus 150 mEE~LgNi~gaRqiferW~~w~P~eq-a--W~sfI~fElRykeieraR~IYerfV~~H-------P~v~~wikyarFE~k 219 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEWEPDEQ-A--WLSFIKFELRYKEIERARSIYERFVLVH-------PKVSNWIKYARFEEK 219 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcCCCcHH-H--HHHHHHHHHHhhHHHHHHHHHHHHheec-------ccHHHHHHHHHHHHh
Confidence 34455666666666666666655532 2 3333334444455566666665543221 125667777777777
Q ss_pred ccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHH--------------
Q 000742 81 LEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKL-------------- 146 (1313)
Q Consensus 81 ~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l-------------- 146 (1313)
.|+..-|...| ++|++...+.. .....+...|..-... ..++.|...|+-|++.
T Consensus 220 ~g~~~~aR~Vy-erAie~~~~d~---~~e~lfvaFA~fEe~q--------kE~ERar~iykyAld~~pk~raeeL~k~~~ 287 (677)
T KOG1915|consen 220 HGNVALARSVY-ERAIEFLGDDE---EAEILFVAFAEFEERQ--------KEYERARFIYKYALDHIPKGRAEELYKKYT 287 (677)
T ss_pred cCcHHHHHHHH-HHHHHHhhhHH---HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 88888888888 88887665422 1112222222222222 4455555554444332
Q ss_pred --HHHhccCCCCCc-------------chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHH
Q 000742 147 --AQTLKENPATSR-------------SSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRL 211 (1313)
Q Consensus 147 --~~~~~~~~~~~~-------------~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 211 (1313)
-++.++...... -+..|....++...-.+-...|+.+.-.+.|++|+.-.+.......-......
T Consensus 288 ~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYL 367 (677)
T KOG1915|consen 288 AFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYL 367 (677)
T ss_pred HHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHH
Confidence 122222211100 01123345677777777777899999999999999876553111111223334
Q ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHH
Q 000742 212 HHNLGNV-YMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALAS 290 (1313)
Q Consensus 212 ~~~lg~~-y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~ 290 (1313)
|.+.+.. -....+.+.+.+.|+.++++.|- .....+..+...|....++.+...|.+.+-.|+-..|+..--... .
T Consensus 368 WinYalyeEle~ed~ertr~vyq~~l~lIPH--kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~Y-I 444 (677)
T KOG1915|consen 368 WINYALYEELEAEDVERTRQVYQACLDLIPH--KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGY-I 444 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhcCc--ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHH-H
Confidence 4444432 24568999999999999998873 234678889999999999999999999999999988865432222 2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742 291 QIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIA 370 (1313)
Q Consensus 291 ~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~ 370 (1313)
.+-..++.+..+...|++.+++.+..... +...+..-...++.+.|...|+-|+.--
T Consensus 445 elElqL~efDRcRkLYEkfle~~Pe~c~~-----------------------W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 445 ELELQLREFDRCRKLYEKFLEFSPENCYA-----------------------WSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcChHhhHH-----------------------HHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 24456677777777777776544433222 3333334444455555555554443211
Q ss_pred HHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHc-----------CCHHHH
Q 000742 371 SELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSN-----------GDWAGA 439 (1313)
Q Consensus 371 ~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~-----------g~~~~A 439 (1313)
. -+.| ...+-..-..-...|.+++|...|++.++..+... .-...+.+..+..-.+. .....|
T Consensus 502 ~--ldmp--ellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k--vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~A 575 (677)
T KOG1915|consen 502 A--LDMP--ELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK--VWISFAKFEASASEGQEDEDLAELEITDENIKRA 575 (677)
T ss_pred c--cccH--HHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch--HHHhHHHHhccccccccccchhhhhcchhHHHHH
Confidence 0 0111 12233334445667777777777777776554332 12222223332222222 377778
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHhhHHHHHH
Q 000742 440 LDAFQEGYRIAVEANLPSVQLSALENMHYSHMI 472 (1313)
Q Consensus 440 ~~~~~kAl~i~~~~~~~~~~~~al~~L~~~~~~ 472 (1313)
...|+.|....++.+....-+..+..+-..-..
T Consensus 576 R~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~ 608 (677)
T KOG1915|consen 576 RKIFERANTYLKESTPKEERLMLLEAWKNMEET 608 (677)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHh
Confidence 888888887777777666666555555444444
No 142
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.89 E-value=2.3e-07 Score=98.44 Aligned_cols=191 Identities=19% Similarity=0.171 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHH
Q 000742 27 EARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLV 106 (1313)
Q Consensus 27 ~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~ 106 (1313)
.+..++..|..++..|+|.+|++.|++.+...+. .+....+.+.+|.+++..|+|.+|+..+ ++.++..|..+..
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~---s~~a~~A~l~la~a~y~~~~y~~A~~~~-~~fi~~yP~~~~~- 78 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPN---SPYAPQAQLMLAYAYYKQGDYEEAIAAY-ERFIKLYPNSPKA- 78 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT---STTHHHHHHHHHHHHHHTT-HHHHHHHH-HHHHHH-TT-TTH-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC---ChHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHCCCCcch-
Confidence 3455899999999999999999999999988753 3556789999999999999999999999 9999998887654
Q ss_pred HHHHHHHHHHHHHHHHhccC---CcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHH
Q 000742 107 EQQRACTQLGRTYYEMFLRS---DDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLE 183 (1313)
Q Consensus 107 ~~a~a~~~lg~~y~~l~~~~---~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~ 183 (1313)
..+++.+|.+++.+.... ..+.+...+|+..|+..++.+++. .-..
T Consensus 79 --~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S-----------------------------~y~~ 127 (203)
T PF13525_consen 79 --DYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNS-----------------------------EYAE 127 (203)
T ss_dssp --HHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTS-----------------------------TTHH
T ss_pred --hhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCc-----------------------------hHHH
Confidence 478899999888763222 444556667777777766554322 2223
Q ss_pred HHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhc
Q 000742 184 EAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQ 263 (1313)
Q Consensus 184 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g 263 (1313)
+|.......-.. .+.--+.+|..|.+.|.|..|+..++.+++..+. .+....++..++..|.++|
T Consensus 128 ~A~~~l~~l~~~------------la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~---t~~~~~al~~l~~~y~~l~ 192 (203)
T PF13525_consen 128 EAKKRLAELRNR------------LAEHELYIARFYYKRGKYKAAIIRFQYVIENYPD---TPAAEEALARLAEAYYKLG 192 (203)
T ss_dssp HHHHHHHHHHHH------------HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTT---SHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC---CchHHHHHHHHHHHHHHhC
Confidence 333333332222 2333455677777777777777777777666552 3344556677777777777
Q ss_pred CHHHH
Q 000742 264 KYDEA 268 (1313)
Q Consensus 264 ~~~~A 268 (1313)
..+.|
T Consensus 193 ~~~~a 197 (203)
T PF13525_consen 193 LKQAA 197 (203)
T ss_dssp -HHHH
T ss_pred ChHHH
Confidence 76643
No 143
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.88 E-value=5.6e-06 Score=98.80 Aligned_cols=245 Identities=11% Similarity=0.057 Sum_probs=165.3
Q ss_pred chhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHHhhCCCC-------------
Q 000742 4 DEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNR-----GEYVEALKWFRIDYDVSVKYLPEK------------- 65 (1313)
Q Consensus 4 ~~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~-----g~~~eAl~~~~~al~~~~~~~~~~------------- 65 (1313)
..|++++|...|+..++.+|.+... |..+..+.... .+.+.-...|++.....++.....
T Consensus 50 kLg~~~eA~~~y~~Li~rNPdn~~Y--y~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~ 127 (517)
T PF12569_consen 50 KLGRKEEAEKIYRELIDRNPDNYDY--YRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFK 127 (517)
T ss_pred HcCCHHHHHHHHHHHHHHCCCcHHH--HHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHH
Confidence 3588999999999999999997666 66777776332 245666777776655554421111
Q ss_pred -------------CchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHH--------------hcCHHHHHHHHHHHHHH
Q 000742 66 -------------HLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKD--------------ASDLVEQQRACTQLGRT 118 (1313)
Q Consensus 66 -------------~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~--------------~~~~~~~a~a~~~lg~~ 118 (1313)
+.+..+..+-..|. +..++.... .-+..+... ...+....++++.+|..
T Consensus 128 ~~~~~yl~~~l~KgvPslF~~lk~Ly~---d~~K~~~i~-~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqh 203 (517)
T PF12569_consen 128 ERLDEYLRPQLRKGVPSLFSNLKPLYK---DPEKAAIIE-SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQH 203 (517)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHc---ChhHHHHHH-HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHH
Confidence 11222223333332 222222111 112222111 12234456788999999
Q ss_pred HHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhh
Q 000742 119 YYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNE 198 (1313)
Q Consensus 119 y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 198 (1313)
|..+ |++++|+++.++|++. .|..++.|...|.+|...|++++|.++++.|..+
T Consensus 204 yd~~--------g~~~~Al~~Id~aI~h---------------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L--- 257 (517)
T PF12569_consen 204 YDYL--------GDYEKALEYIDKAIEH---------------TPTLVELYMTKARILKHAGDLKEAAEAMDEAREL--- 257 (517)
T ss_pred HHHh--------CCHHHHHHHHHHHHhc---------------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC---
Confidence 9888 9999999999999988 4566899999999999999999999999999887
Q ss_pred hccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-Hhchh--hhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 000742 199 EEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICK-KIEHC--QGEAKGYINLGELHYRVQKYDEAILCYQKA 275 (1313)
Q Consensus 199 ~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~-~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~ka 275 (1313)
+...-.+....+..+.+.|+.++|.+.+..-..-.. ...+. .........-|.+|.+.|++..|++.|...
T Consensus 258 ------D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 258 ------DLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred ------ChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 222344566678888999999999887755433221 11111 122344566799999999999999999999
Q ss_pred HHHHHHccChh
Q 000742 276 LNLAQSMEDED 286 (1313)
Q Consensus 276 l~~~~~~~~~~ 286 (1313)
.+++.+..+..
T Consensus 332 ~k~f~~~~~DQ 342 (517)
T PF12569_consen 332 LKHFDDFEEDQ 342 (517)
T ss_pred HHHHHHHhccc
Confidence 99988765543
No 144
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.88 E-value=7e-10 Score=114.73 Aligned_cols=132 Identities=20% Similarity=0.157 Sum_probs=99.0
Q ss_pred CCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHH
Q 000742 1029 SCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALAS 1108 (1313)
Q Consensus 1029 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~ 1108 (1313)
..|++||||+|.|+. +-+.+. ..++++.|++|+|+|+..+ .+..+++|++||||+|.++.... +-.
T Consensus 284 q~LtelDLS~N~I~~-----iDESvK-L~Pkir~L~lS~N~i~~v~------nLa~L~~L~~LDLS~N~Ls~~~G--wh~ 349 (490)
T KOG1259|consen 284 QELTELDLSGNLITQ-----IDESVK-LAPKLRRLILSQNRIRTVQ------NLAELPQLQLLDLSGNLLAECVG--WHL 349 (490)
T ss_pred hhhhhccccccchhh-----hhhhhh-hccceeEEeccccceeeeh------hhhhcccceEeecccchhHhhhh--hHh
Confidence 359999999998864 233332 2378999999999998763 35678899999999999863221 122
Q ss_pred HhcCCCCceeEEEeecCCCCHHHHHHHHHHhhcCCCccEEEccCCCCChh-hhhhhcccccccCCccccccccccccccc
Q 000742 1109 LLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASKEL-TLQQNLSSVNSENLQPALKTSDCVSKEVD 1187 (1313)
Q Consensus 1109 ~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~N~i~~~-~~~~~l~~l~~~~l~~n~~~~~~~~~~~~ 1187 (1313)
-+. ++++|.|++|.|.+. +.+.++-+|..||+++|+|... .+.
T Consensus 350 KLG----NIKtL~La~N~iE~L------SGL~KLYSLvnLDl~~N~Ie~ldeV~-------------------------- 393 (490)
T KOG1259|consen 350 KLG----NIKTLKLAQNKIETL------SGLRKLYSLVNLDLSSNQIEELDEVN-------------------------- 393 (490)
T ss_pred hhc----CEeeeehhhhhHhhh------hhhHhhhhheeccccccchhhHHHhc--------------------------
Confidence 222 599999999998633 4567777899999999999865 222
Q ss_pred ccccccccccCCCCcccccccCCccchhhhc
Q 000742 1188 TDQHGLFAMNTDCNDLEVADSEDDKIRVESA 1218 (1313)
Q Consensus 1188 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 1218 (1313)
.+++++-|+.+.|.+|++.+++.
T Consensus 394 --------~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 394 --------HIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred --------ccccccHHHHHhhcCCCccccch
Confidence 25788999999999999987754
No 145
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.86 E-value=2.9e-05 Score=89.21 Aligned_cols=389 Identities=10% Similarity=0.117 Sum_probs=229.7
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHH--------------------------------
Q 000742 25 QEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQ-------------------------------- 72 (1313)
Q Consensus 25 ~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~-------------------------------- 72 (1313)
......+..||+.|...|.+++|...|++++.......+-.....+|.
T Consensus 245 Dq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a 324 (835)
T KOG2047|consen 245 DQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMA 324 (835)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHH
Confidence 445667889999999999999999999998865432211111111110
Q ss_pred ---------------------------HHHHHHHHccChHHHHHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHHHHHHhc
Q 000742 73 ---------------------------SLGEVYLRLEHFKDALIYQVKKHLEL-AKDASDLVEQQRACTQLGRTYYEMFL 124 (1313)
Q Consensus 73 ---------------------------~lg~~y~~~g~~~~A~~~~~~kal~l-~~~~~~~~~~a~a~~~lg~~y~~l~~ 124 (1313)
.+-.+-...|+..+-+..| ..|+.- .|.. -.......+..+|..|...
T Consensus 325 ~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~ty-teAv~~vdP~k-a~Gs~~~Lw~~faklYe~~-- 400 (835)
T KOG2047|consen 325 RFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTY-TEAVKTVDPKK-AVGSPGTLWVEFAKLYENN-- 400 (835)
T ss_pred HHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHH-HHHHHccCccc-CCCChhhHHHHHHHHHHhc--
Confidence 0111111223444444445 444432 1211 1122335677788888765
Q ss_pred cCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhc---c
Q 000742 125 RSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEE---V 201 (1313)
Q Consensus 125 ~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~---~ 201 (1313)
|+.+.|...|++|.+.-- ....+++.+|...|..-....+++.|+...++|...-.... .
T Consensus 401 ------~~l~~aRvifeka~~V~y-----------~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~y 463 (835)
T KOG2047|consen 401 ------GDLDDARVIFEKATKVPY-----------KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYY 463 (835)
T ss_pred ------CcHHHHHHHHHHhhcCCc-----------cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhh
Confidence 999999999999987611 12347799999999999999999999999999976522200 0
Q ss_pred CCCchHH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 000742 202 SEDDDGR------SRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKA 275 (1313)
Q Consensus 202 ~~~~~~~------~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ka 275 (1313)
.+..+.+ ..+|..++......|-++.....|++.+++-- ..+....+.|..+....-+++|.+.|++.
T Consensus 464 d~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri------aTPqii~NyAmfLEeh~yfeesFk~YErg 537 (835)
T KOG2047|consen 464 DNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI------ATPQIIINYAMFLEEHKYFEESFKAYERG 537 (835)
T ss_pred cCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhhHHHHHHHHHHHcC
Confidence 1122333 34566667777778888888888888887744 66778888898888888899999999999
Q ss_pred HHHHHHccChhHHH---HHHHHhHH--HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHH
Q 000742 276 LNLAQSMEDEDALA---SQIDQNIE--TVKKAIEVMDELKK-----EEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDR 345 (1313)
Q Consensus 276 l~~~~~~~~~~~~~---~~~~~~lg--~~~~a~~~~~~a~~-----~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~ 345 (1313)
+.+++-........ ...-...| ....|...|+++.+ +.+.+..++..+.+..|-...+..+++.+..--.
T Consensus 538 I~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~ 617 (835)
T KOG2047|consen 538 ISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVK 617 (835)
T ss_pred CccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC
Confidence 98875322211111 11111111 23556667777764 3334445555555555555555555555422222
Q ss_pred HHHHHHHHHHH----------HHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCC
Q 000742 346 LIEKSSMIFAW----------LKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGN 415 (1313)
Q Consensus 346 L~~~~~~~~~~----------~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~ 415 (1313)
.+..+..-.-| ..-...|++|++... ...........|..-.+.|..+.|...|.-+-++. +
T Consensus 618 ~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp----~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~----d 689 (835)
T KOG2047|consen 618 EAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLP----DSKAREMCLRFADLETKLGEIDRARAIYAHGSQIC----D 689 (835)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCC----hHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcC----C
Confidence 21111111111 112344555554421 12223555667888888888888888887666554 3
Q ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000742 416 LEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVE 452 (1313)
Q Consensus 416 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~ 452 (1313)
+......|...-..-.+-|+-+ .+++-+++.+.
T Consensus 690 Pr~~~~fW~twk~FEvrHGned----T~keMLRikRs 722 (835)
T KOG2047|consen 690 PRVTTEFWDTWKEFEVRHGNED----TYKEMLRIKRS 722 (835)
T ss_pred CcCChHHHHHHHHHHHhcCCHH----HHHHHHHHHHH
Confidence 4444555555555556667733 34444555443
No 146
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.85 E-value=1e-07 Score=117.80 Aligned_cols=160 Identities=9% Similarity=-0.026 Sum_probs=136.7
Q ss_pred HccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcc
Q 000742 80 RLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRS 159 (1313)
Q Consensus 80 ~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~ 159 (1313)
..+....+...+ -+++.+.++..+. ..++..||.+.... |.+++|...++.++++
T Consensus 61 ~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~La~i~~~~--------g~~~ea~~~l~~~~~~------------- 115 (694)
T PRK15179 61 RHAAVHKPAAAL-PELLDYVRRYPHT---ELFQVLVARALEAA--------HRSDEGLAVWRGIHQR------------- 115 (694)
T ss_pred HhhhhcchHhhH-HHHHHHHHhcccc---HHHHHHHHHHHHHc--------CCcHHHHHHHHHHHhh-------------
Confidence 334444455555 5566666665543 47899999999988 9999999999999998
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000742 160 SFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIIC 239 (1313)
Q Consensus 160 ~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~ 239 (1313)
.|+...+..++|.++.+++++++|+..+++++.. .+..+.+++.+|.++..+|++++|+..|++++.-.
T Consensus 116 --~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~ 184 (694)
T PRK15179 116 --FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---------GSSSAREILLEAKSWDEIGQSEQADACFERLSRQH 184 (694)
T ss_pred --CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC
Confidence 5677999999999999999999999999999998 44468899999999999999999999999999843
Q ss_pred HHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 000742 240 KKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQS 281 (1313)
Q Consensus 240 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~ 281 (1313)
++...++..+|.++...|+.++|...|++|++....
T Consensus 185 ------p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 185 ------PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred ------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 377899999999999999999999999999988643
No 147
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.85 E-value=4.4e-07 Score=105.79 Aligned_cols=188 Identities=20% Similarity=0.232 Sum_probs=150.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHH
Q 000742 31 ANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQR 110 (1313)
Q Consensus 31 ~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~ 110 (1313)
-..+|..+...|-..+|+..|++. ..+-....||...|+..+|.... .+-++ +.+++ +
T Consensus 401 q~~laell~slGitksAl~I~Erl--------------emw~~vi~CY~~lg~~~kaeei~-~q~le---k~~d~----~ 458 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERL--------------EMWDPVILCYLLLGQHGKAEEIN-RQELE---KDPDP----R 458 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhH--------------HHHHHHHHHHHHhcccchHHHHH-HHHhc---CCCcc----h
Confidence 457899999999999999988864 55667888999999999998888 66665 23332 4
Q ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000742 111 ACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLI 190 (1313)
Q Consensus 111 a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~ 190 (1313)
.|..+|.+... -.+|++|.++.+.. .+.+...+|...+..++|++|.+.++
T Consensus 459 lyc~LGDv~~d---------------~s~yEkawElsn~~--------------sarA~r~~~~~~~~~~~fs~~~~hle 509 (777)
T KOG1128|consen 459 LYCLLGDVLHD---------------PSLYEKAWELSNYI--------------SARAQRSLALLILSNKDFSEADKHLE 509 (777)
T ss_pred hHHHhhhhccC---------------hHHHHHHHHHhhhh--------------hHHHHHhhccccccchhHHHHHHHHH
Confidence 56666666543 34556666554332 24466667777777899999999999
Q ss_pred HHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHH
Q 000742 191 RGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAIL 270 (1313)
Q Consensus 191 ~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 270 (1313)
.++++ .+.....|+.+|.++.+.++++.|.++|..++.+.| +.+.+|++++..|.+.++-.+|..
T Consensus 510 ~sl~~---------nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~P------d~~eaWnNls~ayi~~~~k~ra~~ 574 (777)
T KOG1128|consen 510 RSLEI---------NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEP------DNAEAWNNLSTAYIRLKKKKRAFR 574 (777)
T ss_pred HHhhc---------CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCC------CchhhhhhhhHHHHHHhhhHHHHH
Confidence 99998 556788999999999999999999999999999977 889999999999999999999999
Q ss_pred HHHHHHHHHHHccC
Q 000742 271 CYQKALNLAQSMED 284 (1313)
Q Consensus 271 ~~~kal~~~~~~~~ 284 (1313)
.+++|++...+...
T Consensus 575 ~l~EAlKcn~~~w~ 588 (777)
T KOG1128|consen 575 KLKEALKCNYQHWQ 588 (777)
T ss_pred HHHHHhhcCCCCCe
Confidence 99999998744433
No 148
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.84 E-value=3e-11 Score=114.62 Aligned_cols=155 Identities=21% Similarity=0.263 Sum_probs=104.5
Q ss_pred CCCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCCCCCChhhHHHHH
Q 000742 916 FTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLL 995 (1313)
Q Consensus 916 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~ 995 (1313)
+.+++.|.||+|.++. ++..+..+.+|+.|++++|+|+ .++..+++++.|++|+++-|++ ..++
T Consensus 32 ~s~ITrLtLSHNKl~~-----vppnia~l~nlevln~~nnqie-----~lp~~issl~klr~lnvgmnrl------~~lp 95 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTV-----VPPNIAELKNLEVLNLSNNQIE-----ELPTSISSLPKLRILNVGMNRL------NILP 95 (264)
T ss_pred hhhhhhhhcccCceee-----cCCcHHHhhhhhhhhcccchhh-----hcChhhhhchhhhheecchhhh------hcCc
Confidence 3678888888888875 4455666778888888888887 5666778888888888888873 3456
Q ss_pred HhhccCCccceeecCCCCCChHHHHHHHHHhhcCCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCCChhHH
Q 000742 996 VKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCI 1075 (1313)
Q Consensus 996 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 1075 (1313)
..|+.++.|+.|||+.|++...... +.+..+.+|+-|.|++|.+. .++..+ ..+++|+.|.+..|.+-.
T Consensus 96 rgfgs~p~levldltynnl~e~~lp--gnff~m~tlralyl~dndfe-----~lp~dv-g~lt~lqil~lrdndll~--- 164 (264)
T KOG0617|consen 96 RGFGSFPALEVLDLTYNNLNENSLP--GNFFYMTTLRALYLGDNDFE-----ILPPDV-GKLTNLQILSLRDNDLLS--- 164 (264)
T ss_pred cccCCCchhhhhhccccccccccCC--cchhHHHHHHHHHhcCCCcc-----cCChhh-hhhcceeEEeeccCchhh---
Confidence 7788888888888888887664221 11222344777777777653 122222 234667777777776543
Q ss_pred HHHHHHHhcCCCccEEEccCCCCC
Q 000742 1076 HKFTASVSLVHGILELNLGGNPIM 1099 (1313)
Q Consensus 1076 ~~l~~~l~~~~~L~~L~Ls~N~i~ 1099 (1313)
++..++.+..|++|.+.+|.++
T Consensus 165 --lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 165 --LPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred --CcHHHHHHHHHHHHhcccceee
Confidence 3555666677777777777765
No 149
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.84 E-value=8.6e-08 Score=118.69 Aligned_cols=222 Identities=9% Similarity=0.008 Sum_probs=158.3
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000742 160 SFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIIC 239 (1313)
Q Consensus 160 ~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~ 239 (1313)
.|.|....++..++..|...+++++|++.++.+++. .|....+|+.+|.+|...+++++|.-. .++.+.
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~---------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~ 93 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE---------HKKSISALYISGILSLSRRPLNDSNLL--NLIDSF 93 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhc
Confidence 456788999999999999999999999999999887 444678999999999999998888766 665555
Q ss_pred HHh-------------chhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHH
Q 000742 240 KKI-------------EHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVM 306 (1313)
Q Consensus 240 ~~~-------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~ 306 (1313)
+.. .+....-.+++.+|.+|.++|++++|...|++++++.+.... +
T Consensus 94 ~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~-------a-------------- 152 (906)
T PRK14720 94 SQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPE-------I-------------- 152 (906)
T ss_pred ccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHH-------H--------------
Confidence 432 233444578999999999999999999999999999865432 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHH
Q 000742 307 DELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVI 386 (1313)
Q Consensus 307 ~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~l 386 (1313)
++++|..+... +.++|.+++.+|+..
T Consensus 153 ------------------------------------LNn~AY~~ae~-dL~KA~~m~~KAV~~----------------- 178 (906)
T PRK14720 153 ------------------------------------VKKLATSYEEE-DKEKAITYLKKAIYR----------------- 178 (906)
T ss_pred ------------------------------------HHHHHHHHHHh-hHHHHHHHHHHHHHH-----------------
Confidence 34444444444 566666666666543
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHHHHHhCC--------------chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000742 387 GESYQKLRKFNKAIKWYTKSWEMYKSIGN--------------LEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVE 452 (1313)
Q Consensus 387 g~~y~~~g~~~~A~~~~~kal~l~~~~~~--------------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~ 452 (1313)
|...++|.++.++.++.++..+...+ .......+.-+-..|...++|++++.+++.++++..+
T Consensus 179 ---~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~ 255 (906)
T PRK14720 179 ---FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK 255 (906)
T ss_pred ---HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc
Confidence 33334455555544444433322111 1223445566668999999999999999999998544
Q ss_pred cCChhHHHHHHHhhHHHHHHhhcC
Q 000742 453 ANLPSVQLSALENMHYSHMIRFDN 476 (1313)
Q Consensus 453 ~~~~~~~~~al~~L~~~~~~~~~~ 476 (1313)
...+...++.+|....++
T Consensus 256 ------n~~a~~~l~~~y~~kY~~ 273 (906)
T PRK14720 256 ------NNKAREELIRFYKEKYKD 273 (906)
T ss_pred ------chhhHHHHHHHHHHHccC
Confidence 334678888888755544
No 150
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.83 E-value=8.9e-05 Score=92.82 Aligned_cols=415 Identities=14% Similarity=0.078 Sum_probs=244.2
Q ss_pred hhHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHcc
Q 000742 6 MQMSEAKRAYRSAKEE--GNRQEEARWANVIGDILK-NRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLE 82 (1313)
Q Consensus 6 ~~~~~A~~~l~~a~~~--~~~~~~a~~~~~lg~~y~-~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g 82 (1313)
+-+..|++.++.+.+. -++..++.+++.+|.+|+ ...++++|..++.+++.+..+..-.+....+.+.++.+|...+
T Consensus 35 kLI~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~ 114 (608)
T PF10345_consen 35 KLIATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTN 114 (608)
T ss_pred HHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcC
Confidence 3455677777777642 245778999999999998 7899999999999999998663222223566778899998887
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhh
Q 000742 83 HFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFL 162 (1313)
Q Consensus 83 ~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~ 162 (1313)
... |..+. +++++.....+..... .++..+ .+...+ ..+++..|.+.++....++...++..
T Consensus 115 ~~~-a~~~l-~~~I~~~~~~~~~~w~-~~frll-~~~l~~------~~~d~~~Al~~L~~~~~~a~~~~d~~-------- 176 (608)
T PF10345_consen 115 PKA-ALKNL-DKAIEDSETYGHSAWY-YAFRLL-KIQLAL------QHKDYNAALENLQSIAQLANQRGDPA-------- 176 (608)
T ss_pred HHH-HHHHH-HHHHHHHhccCchhHH-HHHHHH-HHHHHH------hcccHHHHHHHHHHHHHHhhhcCCHH--------
Confidence 777 99999 9999988875443211 122222 222222 11688999999999999877554432
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhcc-CCCchHHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHHH
Q 000742 163 KEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEV-SEDDDGRSRLHHNLGN--VYMELRMWDKSREHIEQDIIIC 239 (1313)
Q Consensus 163 p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~~lg~--~y~~~g~~~~A~~~~~kal~~~ 239 (1313)
....+....|.+....+..+++++..+++......... +........++..+-. ++...|+++.+...+++.-...
T Consensus 177 -~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~ 255 (608)
T PF10345_consen 177 -VFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFL 255 (608)
T ss_pred -HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 34555566677778888899999999999777664210 0112333444444433 5667788888887777666555
Q ss_pred HHhchhh------------------------------------hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcc
Q 000742 240 KKIEHCQ------------------------------------GEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSME 283 (1313)
Q Consensus 240 ~~~~~~~------------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~ 283 (1313)
....+.+ ..+-+|.--|..+...+..++|.++++++++...+..
T Consensus 256 ~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~ 335 (608)
T PF10345_consen 256 DEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLK 335 (608)
T ss_pred HHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhh
Confidence 4432211 1233455556666777778899999999999877654
Q ss_pred -ChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742 284 -DEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEY 362 (1313)
Q Consensus 284 -~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~ 362 (1313)
....... ..+.........+.... ...+...+......++|.++...
T Consensus 336 ~~~~~~~~---~sl~~~~~~~~~~~~l~-----------------------------~~~~~y~~~~~~~~~~~~~a~~~ 383 (608)
T PF10345_consen 336 IKSPSAPS---ESLSEASERIQWLRYLQ-----------------------------CYLLFYQIWCNFIRGDWSKATQE 383 (608)
T ss_pred ccCCCCCC---cCHHHHHHhHHHHHHHH-----------------------------HHHHHHHHHHHHHCcCHHHHHHH
Confidence 0000000 00000000000000000 00112223333445556666666
Q ss_pred HHHHHHHHHHhCC---chhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH-----------------------------
Q 000742 363 AKRKKRIASELCD---KGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMY----------------------------- 410 (1313)
Q Consensus 363 ~~~a~~i~~~~~~---~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~----------------------------- 410 (1313)
.+........... ....+.+++..|..+...|+.+.|..+|.+..-..
T Consensus 384 l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~ 463 (608)
T PF10345_consen 384 LEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYES 463 (608)
T ss_pred HHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhc
Confidence 6655555444332 23345667777777777777777777776211000
Q ss_pred -------------HHh----CCc--hhHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHH-HHcCChhHHHHHHHhhHH
Q 000742 411 -------------KSI----GNL--EGQALAKVNMGNVLD--SNGDWAGALDAFQEGYRIA-VEANLPSVQLSALENMHY 468 (1313)
Q Consensus 411 -------------~~~----~~~--~~~~~~~~~lg~~y~--~~g~~~~A~~~~~kAl~i~-~~~~~~~~~~~al~~L~~ 468 (1313)
..+ .+. .....++..+-.++. ..-...++..++.++++.+ ...+.......++..|+.
T Consensus 464 ~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~ 543 (608)
T PF10345_consen 464 SRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGH 543 (608)
T ss_pred ccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 000 000 011111111111221 2223458888888888888 777777777777777777
Q ss_pred HHH
Q 000742 469 SHM 471 (1313)
Q Consensus 469 ~~~ 471 (1313)
...
T Consensus 544 ~lf 546 (608)
T PF10345_consen 544 RLF 546 (608)
T ss_pred HHH
Confidence 665
No 151
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.82 E-value=7.4e-08 Score=101.27 Aligned_cols=152 Identities=9% Similarity=0.045 Sum_probs=121.8
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 000742 34 IGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACT 113 (1313)
Q Consensus 34 lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~ 113 (1313)
-+-.|+..|+++....+.++.. +.. .-|...++.++++..+ +++++..|+.. .+|.
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~-------~~~----------~~~~~~~~~~~~i~~l-~~~L~~~P~~~------~~w~ 77 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLA-------DPL----------HQFASQQTPEAQLQAL-QDKIRANPQNS------EQWA 77 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHh-------Ccc----------ccccCchhHHHHHHHH-HHHHHHCCCCH------HHHH
Confidence 4567889999988655542211 000 0111267788999999 99999887664 5799
Q ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHH-HHHcCC--HHHHHHHHH
Q 000742 114 QLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGML-QMELDN--LEEAKKFLI 190 (1313)
Q Consensus 114 ~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~-y~~~g~--~~~A~~~~~ 190 (1313)
.+|.+|... |++++|+..|++|+++ .|+.+.++..+|.+ |...|+ +++|...++
T Consensus 78 ~Lg~~~~~~--------g~~~~A~~a~~~Al~l---------------~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~ 134 (198)
T PRK10370 78 LLGEYYLWR--------NDYDNALLAYRQALQL---------------RGENAELYAALATVLYYQAGQHMTPQTREMID 134 (198)
T ss_pred HHHHHHHHC--------CCHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 999999988 9999999999999998 34568899999997 467787 599999999
Q ss_pred HHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000742 191 RGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKK 241 (1313)
Q Consensus 191 ~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~ 241 (1313)
++++. ++....++.++|..+...|++++|+.+++++++..+.
T Consensus 135 ~al~~---------dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 135 KALAL---------DANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHh---------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99998 3445789999999999999999999999999999774
No 152
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.81 E-value=3.4e-08 Score=86.98 Aligned_cols=76 Identities=20% Similarity=0.430 Sum_probs=67.8
Q ss_pred hhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCch-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000742 377 GKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLE-GQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVE 452 (1313)
Q Consensus 377 ~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~-~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~ 452 (1313)
|..+.++.++|.+|..+|+|++|+.+|++++++....++.. ..+.++.++|.+|..+|++++|+++|++|+++.++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 56779999999999999999999999999999977777543 46899999999999999999999999999999764
No 153
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.81 E-value=2.7e-06 Score=93.10 Aligned_cols=295 Identities=13% Similarity=0.059 Sum_probs=178.4
Q ss_pred cchhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHcc
Q 000742 3 RDEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLE 82 (1313)
Q Consensus 3 ~~~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g 82 (1313)
-..|+|.+|++...++.+..+.+..+ |..-+.+.-++|+++.|-.|..++-+.. .......+..++......|
T Consensus 95 l~eG~~~qAEkl~~rnae~~e~p~l~--~l~aA~AA~qrgd~~~an~yL~eaae~~-----~~~~l~v~ltrarlll~~~ 167 (400)
T COG3071 95 LFEGDFQQAEKLLRRNAEHGEQPVLA--YLLAAEAAQQRGDEDRANRYLAEAAELA-----GDDTLAVELTRARLLLNRR 167 (400)
T ss_pred HhcCcHHHHHHHHHHhhhcCcchHHH--HHHHHHHHHhcccHHHHHHHHHHHhccC-----CCchHHHHHHHHHHHHhCC
Confidence 35799999999999999888888777 7788899999999999999999987663 1233567788999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhh
Q 000742 83 HFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFL 162 (1313)
Q Consensus 83 ~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~ 162 (1313)
++..|..-. .++++..|..+ .++....++|... |++.....+..+.-+- ....
T Consensus 168 d~~aA~~~v-~~ll~~~pr~~------~vlrLa~r~y~~~--------g~~~~ll~~l~~L~ka-------~~l~----- 220 (400)
T COG3071 168 DYPAARENV-DQLLEMTPRHP------EVLRLALRAYIRL--------GAWQALLAILPKLRKA-------GLLS----- 220 (400)
T ss_pred CchhHHHHH-HHHHHhCcCCh------HHHHHHHHHHHHh--------ccHHHHHHHHHHHHHc-------cCCC-----
Confidence 999999999 99998887765 3456666777766 7776665555443221 1100
Q ss_pred HHHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742 163 KEYIDAHNNIGML--QMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICK 240 (1313)
Q Consensus 163 p~~~~~~~~la~~--y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~ 240 (1313)
+....-+-+.+.. ..+..+-..+.. +..-.+-.+. .......+...++.-+...|++++|.+..+++++..-
T Consensus 221 ~~e~~~le~~a~~glL~q~~~~~~~~g-L~~~W~~~pr-----~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~ 294 (400)
T COG3071 221 DEEAARLEQQAWEGLLQQARDDNGSEG-LKTWWKNQPR-----KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQW 294 (400)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccchH-HHHHHHhccH-----HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 0111122222211 111111111111 1111111111 0111234455566677777777777777777766532
Q ss_pred HhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742 241 KIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLT 320 (1313)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~ 320 (1313)
.......++ ...-+++..=++..++.++..+..+. +
T Consensus 295 -------D~~L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p~-------L---------------------------- 330 (400)
T COG3071 295 -------DPRLCRLIP--RLRPGDPEPLIKAAEKWLKQHPEDPL-------L---------------------------- 330 (400)
T ss_pred -------ChhHHHHHh--hcCCCCchHHHHHHHHHHHhCCCChh-------H----------------------------
Confidence 111111111 12445666666666666665554332 1
Q ss_pred HHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHH
Q 000742 321 RNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAI 400 (1313)
Q Consensus 321 ~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~ 400 (1313)
+-.||..+...+.|.+|.++++.++... ..+..+..+|.+|.++|+..+|.
T Consensus 331 ----------------------~~tLG~L~~k~~~w~kA~~~leaAl~~~-------~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 331 ----------------------LSTLGRLALKNKLWGKASEALEAALKLR-------PSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred ----------------------HHHHHHHHHHhhHHHHHHHHHHHHHhcC-------CChhhHHHHHHHHHHcCChHHHH
Confidence 2223334444555666666666554432 23356777888999999999999
Q ss_pred HHHHHHHHHH
Q 000742 401 KWYTKSWEMY 410 (1313)
Q Consensus 401 ~~~~kal~l~ 410 (1313)
+.+++++-+.
T Consensus 382 ~~r~e~L~~~ 391 (400)
T COG3071 382 QVRREALLLT 391 (400)
T ss_pred HHHHHHHHHh
Confidence 9998888544
No 154
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.79 E-value=0.0005 Score=86.12 Aligned_cols=463 Identities=14% Similarity=0.049 Sum_probs=277.4
Q ss_pred chhhHHHHHHHHHHHHHhcC--c--HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHH-HHHH
Q 000742 4 DEMQMSEAKRAYRSAKEEGN--R--QEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSL-GEVY 78 (1313)
Q Consensus 4 ~~~~~~~A~~~l~~a~~~~~--~--~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~l-g~~y 78 (1313)
+..+++.|+.++.+++.... . +....+.+.++.+|.+.+... |+...+++++......... ...++..+ ...+
T Consensus 72 eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~-w~~~frll~~~l~ 149 (608)
T PF10345_consen 72 ETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA-WYYAFRLLKIQLA 149 (608)
T ss_pred HcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh-HHHHHHHHHHHHH
Confidence 34678999999999976542 2 223455667899999988888 9999999999986532211 12222223 3333
Q ss_pred HHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCc
Q 000742 79 LRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSR 158 (1313)
Q Consensus 79 ~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~ 158 (1313)
...+++..|++.+ +.....+...+++.....+....+.+.... +..+.+++..+++........-.+..
T Consensus 150 ~~~~d~~~Al~~L-~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~--------~~~~d~~~~l~~~~~~~~~~q~~~~~-- 218 (608)
T PF10345_consen 150 LQHKDYNAALENL-QSIAQLANQRGDPAVFVLASLSEALLHLRR--------GSPDDVLELLQRAIAQARSLQLDPSV-- 218 (608)
T ss_pred HhcccHHHHHHHH-HHHHHHhhhcCCHHHHHHHHHHHHHHHhcC--------CCchhHHHHHHHHHHHHhhcccCCCC--
Confidence 3337999999999 999999987788776666666666666544 77888999999998877765111110
Q ss_pred chhhHHHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHhHhhhhccCC---------------------------------
Q 000742 159 SSFLKEYIDAHNNIGM--LQMELDNLEEAKKFLIRGLEICNEEEVSE--------------------------------- 203 (1313)
Q Consensus 159 ~~~~p~~~~~~~~la~--~y~~~g~~~~A~~~~~~al~~~~~~~~~~--------------------------------- 203 (1313)
.+....++..+-. ++...|+++.+...+++.-...++.....
T Consensus 219 ---~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~ 295 (608)
T PF10345_consen 219 ---HIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLP 295 (608)
T ss_pred ---CcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecC
Confidence 1223334444433 45667777777666555444433321100
Q ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc---hh-----------------hhHHHHHHHHHHHHHHhc
Q 000742 204 DDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIE---HC-----------------QGEAKGYINLGELHYRVQ 263 (1313)
Q Consensus 204 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~---~~-----------------~~~~~~~~~la~~~~~~g 263 (1313)
.....+.+|..-|..+...+..++|.++++++++..++.. .. ......++..+....-.+
T Consensus 296 ~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~ 375 (608)
T PF10345_consen 296 KEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRG 375 (608)
T ss_pred HHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCc
Confidence 0112344566667788888888899999999999987654 00 112334566677778899
Q ss_pred CHHHHHHHHHHHHHHHHHccCh--hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHH
Q 000742 264 KYDEAILCYQKALNLAQSMEDE--DALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNA 341 (1313)
Q Consensus 264 ~~~~A~~~~~kal~~~~~~~~~--~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~ 341 (1313)
++.+|....+.+.......+.. ......+++-.|.++.+.+.++.|..++..............+...+...+.
T Consensus 376 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila---- 451 (608)
T PF10345_consen 376 DWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA---- 451 (608)
T ss_pred CHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH----
Confidence 9999999999998887655442 2223445566677777777777776666543333322222233333322111
Q ss_pred HHHHHHHHHHHHHH--HHH--HHHHHHHHHHHHHHhCCch--hhHHHHHHHHHHHH--HhhCHHHHHHHHHHHHHHH-HH
Q 000742 342 SLDRLIEKSSMIFA--WLK--HCEYAKRKKRIASELCDKG--KLSDSFLVIGESYQ--KLRKFNKAIKWYTKSWEMY-KS 412 (1313)
Q Consensus 342 ~l~~L~~~~~~~~~--~~~--A~~~~~~a~~i~~~~~~~~--~~a~~~~~lg~~y~--~~g~~~~A~~~~~kal~l~-~~ 412 (1313)
.-++..++..... ..+ ..+.+++. .+...+.+ ....++..+-.++. ..-...++..++.++++.. ..
T Consensus 452 -~LNl~~I~~~~~~~~~~~~~~~~l~~~i---~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~ 527 (608)
T PF10345_consen 452 -ALNLAIILQYESSRDDSESELNELLEQI---EPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNK 527 (608)
T ss_pred -HHHHHHHhHhhcccchhhhHHHHHHHhc---CccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHh
Confidence 1111122111111 000 11111111 11111111 11222222222222 2234459999999999999 77
Q ss_pred hCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH--HHHhhHHHHHHhhcCHHHHHHHHHHHHHH
Q 000742 413 IGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLS--ALENMHYSHMIRFDNIEEARRLQHEIDKL 490 (1313)
Q Consensus 413 ~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~~~~~~--al~~L~~~~~~~~~~~~~a~~~~e~~~~l 490 (1313)
.++......++..++..++ .|+..++......+..++++..+.....- +...+..-.....++.+++....+.+..+
T Consensus 528 ~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~~ 606 (608)
T PF10345_consen 528 LGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDRV 606 (608)
T ss_pred hccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh
Confidence 7777777888888999988 89999999998889999988722222221 22233333234567778888877777655
Q ss_pred H
Q 000742 491 K 491 (1313)
Q Consensus 491 ~ 491 (1313)
+
T Consensus 607 ~ 607 (608)
T PF10345_consen 607 S 607 (608)
T ss_pred c
Confidence 4
No 155
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=1.7e-06 Score=87.70 Aligned_cols=243 Identities=9% Similarity=0.038 Sum_probs=172.4
Q ss_pred hhhHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHcc
Q 000742 5 EMQMSEAKRAYRSAKE--EGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLE 82 (1313)
Q Consensus 5 ~~~~~~A~~~l~~a~~--~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g 82 (1313)
.....+|.+...+... .-+....+..|..-+..|....+|++|...+.+|.+-.+.....-+.+.+|-..|.....+.
T Consensus 6 akki~ea~e~~a~t~~~wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~ 85 (308)
T KOG1585|consen 6 AKKISEADEMTALTLTRWKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELS 85 (308)
T ss_pred HHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666554 33445566778888889999999999999999999888776666667888889999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhh
Q 000742 83 HFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFL 162 (1313)
Q Consensus 83 ~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~ 162 (1313)
.+.++..+| ++|..++.+.+.+...+.++-.-|.+... .++++|++.|++++.+.+.-....
T Consensus 86 klsEvvdl~-eKAs~lY~E~GspdtAAmaleKAak~len---------v~Pd~AlqlYqralavve~~dr~~-------- 147 (308)
T KOG1585|consen 86 KLSEVVDLY-EKASELYVECGSPDTAAMALEKAAKALEN---------VKPDDALQLYQRALAVVEEDDRDQ-------- 147 (308)
T ss_pred HhHHHHHHH-HHHHHHHHHhCCcchHHHHHHHHHHHhhc---------CCHHHHHHHHHHHHHHHhccchHH--------
Confidence 999999999 99999998888777666666666665532 678888999988888876543321
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000742 163 KEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKI 242 (1313)
Q Consensus 163 p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~ 242 (1313)
.-...+...+.++.+..+|.+|-..+.+-..+..+. ...+.....+...-.+|....+|..|...|+...++-.-.
T Consensus 148 -ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~---~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~ 223 (308)
T KOG1585|consen 148 -MAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKC---DAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFL 223 (308)
T ss_pred -HHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHH---hhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcccc
Confidence 445677778888888888888888888776666554 3334445556666677777788888888888766653211
Q ss_pred chhhhHHHHHHHHHHHHHHhcCHHHHHHHH
Q 000742 243 EHCQGEAKGYINLGELHYRVQKYDEAILCY 272 (1313)
Q Consensus 243 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 272 (1313)
.+....+..+|-..| ..|+.+++...+
T Consensus 224 --~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 224 --KSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred --ChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 124445555554443 446666655444
No 156
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=3.8e-06 Score=84.83 Aligned_cols=208 Identities=14% Similarity=0.118 Sum_probs=152.0
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 000742 37 ILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLG 116 (1313)
Q Consensus 37 ~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg 116 (1313)
.+...+.|++|.+.|.+| |..|....++..|-..| .++-++..+.++....+..|...+
T Consensus 23 lfgg~~k~eeAadl~~~A--------------------an~yklaK~w~~AG~af-lkaA~~h~k~~skhDaat~YveA~ 81 (288)
T KOG1586|consen 23 LFGGSNKYEEAAELYERA--------------------ANMYKLAKNWSAAGDAF-LKAADLHLKAGSKHDAATTYVEAA 81 (288)
T ss_pred ccCCCcchHHHHHHHHHH--------------------HHHHHHHHhHHHHHHHH-HHHHHHHHhcCCchhHHHHHHHHH
Confidence 334455788888777766 44455556677777777 777777777777667777778888
Q ss_pred HHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhH
Q 000742 117 RTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMEL-DNLEEAKKFLIRGLEI 195 (1313)
Q Consensus 117 ~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~-g~~~~A~~~~~~al~~ 195 (1313)
.+|.. .+.++|+.++++|++++...+.-. .-+.-+..+|.+|... .++++|+.+|++|-+.
T Consensus 82 ~cykk---------~~~~eAv~cL~~aieIyt~~Grf~---------~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~ 143 (288)
T KOG1586|consen 82 NCYKK---------VDPEEAVNCLEKAIEIYTDMGRFT---------MAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEY 143 (288)
T ss_pred HHhhc---------cChHHHHHHHHHHHHHHHhhhHHH---------HHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 88754 688899999999999988776532 4456677888888765 8999999999999998
Q ss_pred hhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHH-HHHHHHHHHHHhcCHHHHHHHHHH
Q 000742 196 CNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAK-GYINLGELHYRVQKYDEAILCYQK 274 (1313)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~k 274 (1313)
++.- +........+...|..-...++|.+|+..|++.....-.++-....+. .+..-|.+|....+.-.|...+++
T Consensus 144 yk~e---es~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALek 220 (288)
T KOG1586|consen 144 YKGE---ESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEK 220 (288)
T ss_pred Hcch---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHH
Confidence 8762 223334456677778888889999999999988776544333233333 345567778888898889999999
Q ss_pred HHHHHHHccChh
Q 000742 275 ALNLAQSMEDED 286 (1313)
Q Consensus 275 al~~~~~~~~~~ 286 (1313)
..+++|...+..
T Consensus 221 y~~~dP~F~dsR 232 (288)
T KOG1586|consen 221 YQELDPAFTDSR 232 (288)
T ss_pred HHhcCCcccccH
Confidence 999998877654
No 157
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.77 E-value=2.7e-08 Score=104.83 Aligned_cols=105 Identities=26% Similarity=0.313 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000742 164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIE 243 (1313)
Q Consensus 164 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~ 243 (1313)
..++-+-.-|.-.+..++|++|+..|.+|+++ .|..+..|.+.|.+|.++|+|+.|++.++.|+.+.+
T Consensus 79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l---------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp--- 146 (304)
T KOG0553|consen 79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL---------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP--- 146 (304)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh---
Confidence 45667777888899999999999999999999 444678999999999999999999999999999987
Q ss_pred hhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcc
Q 000742 244 HCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSME 283 (1313)
Q Consensus 244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~ 283 (1313)
...++|..||.+|..+|++++|++.|++|+++.|...
T Consensus 147 ---~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 147 ---HYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNE 183 (304)
T ss_pred ---HHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcH
Confidence 8999999999999999999999999999999998765
No 158
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.76 E-value=1.9e-07 Score=115.36 Aligned_cols=169 Identities=9% Similarity=-0.073 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHH
Q 000742 30 WANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQ 109 (1313)
Q Consensus 30 ~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a 109 (1313)
.+.++-.+....+....+...+-+++.+...+ ++...++..+|.+....|.+++|...+ +.+++++|+..
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~La~i~~~~g~~~ea~~~l-~~~~~~~Pd~~------ 120 (694)
T PRK15179 51 LLQQARQVLERHAAVHKPAAALPELLDYVRRY---PHTELFQVLVARALEAAHRSDEGLAVW-RGIHQRFPDSS------ 120 (694)
T ss_pred HHHHHHHHHHHhhhhcchHhhHHHHHHHHHhc---cccHHHHHHHHHHHHHcCCcHHHHHHH-HHHHhhCCCcH------
Confidence 35555666667777777777777777776544 555899999999999999999999999 99999998764
Q ss_pred HHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000742 110 RACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFL 189 (1313)
Q Consensus 110 ~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~ 189 (1313)
.+..+++.+...+ +++++|...+++++.. .|+.+.+++.+|.++.+.|++++|+..|
T Consensus 121 ~a~~~~a~~L~~~--------~~~eeA~~~~~~~l~~---------------~p~~~~~~~~~a~~l~~~g~~~~A~~~y 177 (694)
T PRK15179 121 EAFILMLRGVKRQ--------QGIEAGRAEIELYFSG---------------GSSSAREILLEAKSWDEIGQSEQADACF 177 (694)
T ss_pred HHHHHHHHHHHHh--------ccHHHHHHHHHHHhhc---------------CCCCHHHHHHHHHHHHHhcchHHHHHHH
Confidence 5778999999988 9999999999999988 4566899999999999999999999999
Q ss_pred HHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742 190 IRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICK 240 (1313)
Q Consensus 190 ~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~ 240 (1313)
++++.- .+....++..+|.++...|+.++|...|++|++...
T Consensus 178 ~~~~~~---------~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 178 ERLSRQ---------HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred HHHHhc---------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 999984 334578999999999999999999999999999864
No 159
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.75 E-value=6e-08 Score=85.43 Aligned_cols=77 Identities=22% Similarity=0.346 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742 162 LKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICK 240 (1313)
Q Consensus 162 ~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~ 240 (1313)
+|..+.++.++|.+|..+|+|++|+.+|++++++.... +.+.+..+.++.++|.+|..+|++++|++++++|+++.+
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQL--GDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT--TTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 36789999999999999999999999999999996554 334556799999999999999999999999999999876
No 160
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.75 E-value=1.5e-07 Score=91.42 Aligned_cols=104 Identities=12% Similarity=0.080 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000742 163 KEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKI 242 (1313)
Q Consensus 163 p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~ 242 (1313)
++..+..+.+|..++..|++++|...|+-...+ ++.....|++||.++..+|+|++|+..|.+|+.+.+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~---------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-- 100 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY---------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-- 100 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--
Confidence 356788899999999999999999999999888 666789999999999999999999999999999976
Q ss_pred chhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 000742 243 EHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQS 281 (1313)
Q Consensus 243 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~ 281 (1313)
+.+..++++|.+|...|+.+.|++.|+.|+.....
T Consensus 101 ----ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~ 135 (157)
T PRK15363 101 ----DAPQAPWAAAECYLACDNVCYAIKALKAVVRICGE 135 (157)
T ss_pred ----CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence 88999999999999999999999999999999843
No 161
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.75 E-value=2e-09 Score=108.70 Aligned_cols=115 Identities=23% Similarity=0.185 Sum_probs=39.1
Q ss_pred HHhhcCCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHH
Q 000742 1024 QLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGA 1103 (1313)
Q Consensus 1024 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~ 1103 (1313)
.......+++|+|++|.|+.. +.+...+.+|+.|+|++|.|+.. ..+..++.|++|++++|.|+..+.
T Consensus 14 ~~~n~~~~~~L~L~~n~I~~I------e~L~~~l~~L~~L~Ls~N~I~~l------~~l~~L~~L~~L~L~~N~I~~i~~ 81 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQISTI------ENLGATLDKLEVLDLSNNQITKL------EGLPGLPRLKTLDLSNNRISSISE 81 (175)
T ss_dssp ----------------------------S--TT-TT--EEE-TTS--S--------TT----TT--EEE--SS---S-CH
T ss_pred ccccccccccccccccccccc------cchhhhhcCCCEEECCCCCCccc------cCccChhhhhhcccCCCCCCcccc
Confidence 333334577777777777542 22222235788888888888765 235567888899999998876532
Q ss_pred HHHHHHhcCCCCceeEEEeecCCCCHHHHHHHHHHhhcCCCccEEEccCCCCChh
Q 000742 1104 NALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASKEL 1158 (1313)
Q Consensus 1104 ~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~N~i~~~ 1158 (1313)
.+...+. +|++|+|++|+|.+.+ -...+..+++|+.|+|.+|.+++.
T Consensus 82 -~l~~~lp----~L~~L~L~~N~I~~l~---~l~~L~~l~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 82 -GLDKNLP----NLQELYLSNNKISDLN---ELEPLSSLPKLRVLSLEGNPVCEK 128 (175)
T ss_dssp -HHHHH-T----T--EEE-TTS---SCC---CCGGGGG-TT--EEE-TT-GGGGS
T ss_pred -chHHhCC----cCCEEECcCCcCCChH---HhHHHHcCCCcceeeccCCcccch
Confidence 2322232 4889999999887543 124577888999999999988765
No 162
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.74 E-value=1.7e-09 Score=111.90 Aligned_cols=107 Identities=22% Similarity=0.224 Sum_probs=59.5
Q ss_pred cCCCccEEEccCCCCCh--HHHHHHHHHhcCCCCceeEEEeecCCCCHHHHHHHHHHhhcCCCccEEEccCCCCChh-hh
Q 000742 1084 LVHGILELNLGGNPIMK--EGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASKEL-TL 1160 (1313)
Q Consensus 1084 ~~~~L~~L~Ls~N~i~~--~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~N~i~~~-~~ 1160 (1313)
....|++||||+|.|+. +.+. ++. .++.|++|+|.|... ..+..+++|+.||||+|.++.. |+
T Consensus 282 TWq~LtelDLS~N~I~~iDESvK----L~P----kir~L~lS~N~i~~v------~nLa~L~~L~~LDLS~N~Ls~~~Gw 347 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVK----LAP----KLRRLILSQNRIRTV------QNLAELPQLQLLDLSGNLLAECVGW 347 (490)
T ss_pred hHhhhhhccccccchhhhhhhhh----hcc----ceeEEeccccceeee------hhhhhcccceEeecccchhHhhhhh
Confidence 34556667777776652 2221 111 367777777776632 2356666777777777766654 55
Q ss_pred hhhcccccccCCcccccccccccccccccccccccccCCCCcccccccCCccchhhhc
Q 000742 1161 QQNLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIRVESA 1218 (1313)
Q Consensus 1161 ~~~l~~l~~~~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 1218 (1313)
..-+-++..+.|.+|.+.++. .+..+=+|..||+++|+|..+..
T Consensus 348 h~KLGNIKtL~La~N~iE~LS--------------GL~KLYSLvnLDl~~N~Ie~lde 391 (490)
T KOG1259|consen 348 HLKLGNIKTLKLAQNKIETLS--------------GLRKLYSLVNLDLSSNQIEELDE 391 (490)
T ss_pred HhhhcCEeeeehhhhhHhhhh--------------hhHhhhhheeccccccchhhHHH
Confidence 444444445555555444422 13344566777777777765533
No 163
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.74 E-value=1.5e-06 Score=92.23 Aligned_cols=184 Identities=16% Similarity=0.144 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhch
Q 000742 165 YIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEH 244 (1313)
Q Consensus 165 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~ 244 (1313)
.+..++..|..++..|+|.+|+..|++.+..++. .+....+.+.+|.+|+..|++++|+..+++.+...|.
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~------s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~--- 74 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPN------SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN--- 74 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT---
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---
Confidence 3678889999999999999999999999998765 5667788999999999999999999999999988874
Q ss_pred hhhHHHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 000742 245 CQGEAKGYINLGELHYRVQ-----------KYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEE 313 (1313)
Q Consensus 245 ~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~ 313 (1313)
++....+++.+|.+++.+. ...+|+..|+..++..|+..-... |...+.
T Consensus 75 ~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~--------------A~~~l~------ 134 (203)
T PF13525_consen 75 SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEE--------------AKKRLA------ 134 (203)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHH--------------HHHHHH------
T ss_pred CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHH--------------HHHHHH------
Confidence 4456778888888876653 233566666666666555432110 000000
Q ss_pred HHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHh
Q 000742 314 QNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKL 393 (1313)
Q Consensus 314 ~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~ 393 (1313)
.+ . ...+.--+.+|..|.+.
T Consensus 135 ----~l--------------------------------------------------~------~~la~~e~~ia~~Y~~~ 154 (203)
T PF13525_consen 135 ----EL--------------------------------------------------R------NRLAEHELYIARFYYKR 154 (203)
T ss_dssp ----HH--------------------------------------------------H------HHHHHHHHHHHHHHHCT
T ss_pred ----HH--------------------------------------------------H------HHHHHHHHHHHHHHHHc
Confidence 00 0 11123344589999999
Q ss_pred hCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 000742 394 RKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGAL 440 (1313)
Q Consensus 394 g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~ 440 (1313)
|.|..|+..++.+++-++ +.+....++..++..|.++|..+.|.
T Consensus 155 ~~y~aA~~r~~~v~~~yp---~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 155 GKYKAAIIRFQYVIENYP---DTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp T-HHHHHHHHHHHHHHST---TSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ccHHHHHHHHHHHHHHCC---CCchHHHHHHHHHHHHHHhCChHHHH
Confidence 999999999999987665 44566778999999999999988544
No 164
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.74 E-value=0.00012 Score=84.66 Aligned_cols=222 Identities=16% Similarity=0.190 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH------HhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742 167 DAHNNIGMLQMELDNLEEAKKFLIRG------LEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICK 240 (1313)
Q Consensus 167 ~~~~~la~~y~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~ 240 (1313)
+.|-.-|.+|.+..++++|+++|++. ++++.- ..+......-...|.-+...|+++.|+.+|-+|-.+.+
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarf----afp~evv~lee~wg~hl~~~~q~daainhfiea~~~~k 737 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARF----AFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIK 737 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHh----hCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHH
Confidence 45666677788888888888887663 443332 23444555566778888899999999999877655433
Q ss_pred HhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742 241 KIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLT 320 (1313)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~ 320 (1313)
. -.+.....+|.+|+..++..-... .....+..++.-|.+.|++..|...|.++.
T Consensus 738 a--------------ieaai~akew~kai~ildniqdqk-~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------- 792 (1636)
T KOG3616|consen 738 A--------------IEAAIGAKEWKKAISILDNIQDQK-TASGYYGEIADHYANKGDFEIAEELFTEAD---------- 792 (1636)
T ss_pred H--------------HHHHhhhhhhhhhHhHHHHhhhhc-cccccchHHHHHhccchhHHHHHHHHHhcc----------
Confidence 1 123334456677766655432221 112233445555666666666666555442
Q ss_pred HHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHH
Q 000742 321 RNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAI 400 (1313)
Q Consensus 321 ~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~ 400 (1313)
.......+|...+.|..|.++.++. ..+......|...+.-....|+|.+|.
T Consensus 793 ---------------------~~~dai~my~k~~kw~da~kla~e~-------~~~e~t~~~yiakaedldehgkf~eae 844 (1636)
T KOG3616|consen 793 ---------------------LFKDAIDMYGKAGKWEDAFKLAEEC-------HGPEATISLYIAKAEDLDEHGKFAEAE 844 (1636)
T ss_pred ---------------------hhHHHHHHHhccccHHHHHHHHHHh-------cCchhHHHHHHHhHHhHHhhcchhhhh
Confidence 2333344555556666665544433 223334455555555555556555555
Q ss_pred HHH------HHHHHHHHHhCC------------chhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000742 401 KWY------TKSWEMYKSIGN------------LEGQALAKVNMGNVLDSNGDWAGALDAFQE 445 (1313)
Q Consensus 401 ~~~------~kal~l~~~~~~------------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~k 445 (1313)
..| .+|++++...+- ......+...+|.-|...|+.+.|...|-+
T Consensus 845 qlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 845 QLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred heeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 444 234444443221 112234566777777777776666555544
No 165
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=3.4e-06 Score=85.64 Aligned_cols=192 Identities=13% Similarity=0.146 Sum_probs=162.0
Q ss_pred CchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHH
Q 000742 66 HLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMK 145 (1313)
Q Consensus 66 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~ 145 (1313)
..+..|..-+.+|....+|++|...+ .+|.+-...+......+.+|-..|.....+ ..+.++..+|++|..
T Consensus 29 gaas~yekAAvafRnAk~feKakdcL-lkA~~~yEnnrslfhAAKayEqaamLake~--------~klsEvvdl~eKAs~ 99 (308)
T KOG1585|consen 29 GAASLYEKAAVAFRNAKKFEKAKDCL-LKASKGYENNRSLFHAAKAYEQAAMLAKEL--------SKLSEVVDLYEKASE 99 (308)
T ss_pred hhHHHHHHHHHHHHhhccHHHHHHHH-HHHHHHHHhcccHHHHHHHHHHHHHHHHHH--------HHhHHHHHHHHHHHH
Confidence 34667777889999999999999999 999999999998888899999999998888 999999999999999
Q ss_pred HHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCH
Q 000742 146 LAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMW 225 (1313)
Q Consensus 146 l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~ 225 (1313)
++.+.+... .+..-...|--.....+.++|+..|++++.+.++- +...+....+...++++.+...|
T Consensus 100 lY~E~Gspd----------tAAmaleKAak~lenv~Pd~AlqlYqralavve~~---dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 100 LYVECGSPD----------TAAMALEKAAKALENVKPDDALQLYQRALAVVEED---DRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HHHHhCCcc----------hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHhhhHhhhhHHh
Confidence 999887664 23333344444556689999999999999998772 44556677788899999999999
Q ss_pred HHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 000742 226 DKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLA 279 (1313)
Q Consensus 226 ~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~ 279 (1313)
++|-..+.+-..+..+..........+...-.+|....+|..|..+++..-++.
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip 220 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP 220 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence 999999999988888877777777888888888888999999999999877654
No 166
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.71 E-value=2.5e-06 Score=92.67 Aligned_cols=187 Identities=12% Similarity=-0.011 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchh
Q 000742 166 IDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHC 245 (1313)
Q Consensus 166 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~ 245 (1313)
+..++..|..+...|+|++|++.|++.+...+. .+....+.+.+|.+|+..+++++|+.++++.++..|. +
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~------s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~---~ 102 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPF------GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT---H 102 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC---C
Confidence 456778888889999999999999999998665 5667778899999999999999999999999999874 4
Q ss_pred hhHHHHHHHHHHHHHHhc---------------C---HHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHH
Q 000742 246 QGEAKGYINLGELHYRVQ---------------K---YDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMD 307 (1313)
Q Consensus 246 ~~~~~~~~~la~~~~~~g---------------~---~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~ 307 (1313)
+....+++.+|.++...+ + ..+|+..+++.++..|+..-.. +|...+.
T Consensus 103 ~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~--------------~A~~rl~ 168 (243)
T PRK10866 103 PNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTT--------------DATKRLV 168 (243)
T ss_pred CchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHH--------------HHHHHHH
Confidence 566788888888765443 1 2355566666666655432110 0000000
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHH
Q 000742 308 ELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIG 387 (1313)
Q Consensus 308 ~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg 387 (1313)
.+ . ...+.--..+|
T Consensus 169 ----------~l--------------------------------------------------~------~~la~~e~~ia 182 (243)
T PRK10866 169 ----------FL--------------------------------------------------K------DRLAKYELSVA 182 (243)
T ss_pred ----------HH--------------------------------------------------H------HHHHHHHHHHH
Confidence 00 0 01113334589
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000742 388 ESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQ 444 (1313)
Q Consensus 388 ~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~ 444 (1313)
..|.+.|.|..|+.-++.+++-++ +.+....+++.++.+|...|..++|..+..
T Consensus 183 ~~Y~~~~~y~AA~~r~~~v~~~Yp---~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 183 EYYTKRGAYVAVVNRVEQMLRDYP---DTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHcCchHHHHHHHHHHHHHCC---CCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 999999999999999999887665 445678889999999999999999987654
No 167
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.71 E-value=4.7e-07 Score=98.28 Aligned_cols=194 Identities=10% Similarity=0.005 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHH
Q 000742 28 ARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVE 107 (1313)
Q Consensus 28 a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~ 107 (1313)
+..++..|..++..|+|++|++.|++.+...+. .+....+.+.+|.+|+..++|++|+.++ ++.++..|+.+..
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~---s~~a~~a~l~la~ayy~~~~y~~A~~~~-e~fi~~~P~~~~~-- 105 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPF---GPYSQQVQLDLIYAYYKNADLPLAQAAI-DRFIRLNPTHPNI-- 105 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHhCcCCCch--
Confidence 444788999999999999999999999987743 2444567899999999999999999999 9999999988765
Q ss_pred HHHHHHHHHHHHHHHh----------ccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCc--chhhHHHHHHHHHHHHH
Q 000742 108 QQRACTQLGRTYYEMF----------LRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSR--SSFLKEYIDAHNNIGML 175 (1313)
Q Consensus 108 ~a~a~~~lg~~y~~l~----------~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~--~~~~p~~~~~~~~la~~ 175 (1313)
..+++.+|.++..+. .....+.....+|+..|++.++.+++..-.+.... ......++.--..+|..
T Consensus 106 -~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~ 184 (243)
T PRK10866 106 -DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEY 184 (243)
T ss_pred -HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888888764441 11223444456777777777666443211100000 01122345556678899
Q ss_pred HHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000742 176 QMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQ 234 (1313)
Q Consensus 176 y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~k 234 (1313)
|.+.|.|..|+.-++.+++.++. .+....++..++..|..+|..++|..+...
T Consensus 185 Y~~~~~y~AA~~r~~~v~~~Yp~------t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 185 YTKRGAYVAVVNRVEQMLRDYPD------TQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHcCchHHHHHHHHHHHHHCCC------CchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 99999999999999999998776 566788999999999999999999876643
No 168
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.70 E-value=2e-07 Score=96.66 Aligned_cols=179 Identities=20% Similarity=0.187 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHH
Q 000742 10 EAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALI 89 (1313)
Q Consensus 10 ~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~ 89 (1313)
.+...+-......|....+ ..++..+...|+-+.+..+..++....+ .....+..+|......|+|.+|+.
T Consensus 51 ~a~~al~~~~~~~p~d~~i---~~~a~a~~~~G~a~~~l~~~~~~~~~~~------~d~~ll~~~gk~~~~~g~~~~A~~ 121 (257)
T COG5010 51 GAAAALGAAVLRNPEDLSI---AKLATALYLRGDADSSLAVLQKSAIAYP------KDRELLAAQGKNQIRNGNFGEAVS 121 (257)
T ss_pred HHHHHHHHHHhcCcchHHH---HHHHHHHHhcccccchHHHHhhhhccCc------ccHHHHHHHHHHHHHhcchHHHHH
Confidence 3444455555555655444 6888999999999999988887655442 224556669999999999999999
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHH
Q 000742 90 YQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAH 169 (1313)
Q Consensus 90 ~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~ 169 (1313)
.+ +++..+.|... ++|..+|.+|.+. |+++.|...|.+|+++. |..+.++
T Consensus 122 ~~-rkA~~l~p~d~------~~~~~lgaaldq~--------Gr~~~Ar~ay~qAl~L~---------------~~~p~~~ 171 (257)
T COG5010 122 VL-RKAARLAPTDW------EAWNLLGAALDQL--------GRFDEARRAYRQALELA---------------PNEPSIA 171 (257)
T ss_pred HH-HHHhccCCCCh------hhhhHHHHHHHHc--------cChhHHHHHHHHHHHhc---------------cCCchhh
Confidence 99 99999887654 6789999999998 99999999999999993 3446799
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000742 170 NNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDI 236 (1313)
Q Consensus 170 ~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal 236 (1313)
.|+|..|+-.|+++.|..++.++... ......+..+++.+....|++++|.....+-+
T Consensus 172 nNlgms~~L~gd~~~A~~lll~a~l~---------~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 172 NNLGMSLLLRGDLEDAETLLLPAYLS---------PAADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhC---------CCCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 99999999999999999999999776 33356788999999999999999987765543
No 169
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=3e-06 Score=86.96 Aligned_cols=196 Identities=14% Similarity=0.028 Sum_probs=147.5
Q ss_pred hCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 000742 41 RGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYY 120 (1313)
Q Consensus 41 ~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~ 120 (1313)
..+.++-++.....+...+...-.+..+..|-....+....|+.+-|..++ ++....+|... +.-..-|..+.
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~-~~L~~~fp~S~------RV~~lkam~lE 97 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCI-NQLRDRFPGSK------RVGKLKAMLLE 97 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHH-HHHHHhCCCCh------hHHHHHHHHHH
Confidence 345666777777776666554344556778888888888999999999999 87776665443 22333444454
Q ss_pred HHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhc
Q 000742 121 EMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEE 200 (1313)
Q Consensus 121 ~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~ 200 (1313)
.. |.+++|+++|+..++- .|....++-..-.+...+|+--+|++.+.+.++.+..
T Consensus 98 a~--------~~~~~A~e~y~~lL~d---------------dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~-- 152 (289)
T KOG3060|consen 98 AT--------GNYKEAIEYYESLLED---------------DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMN-- 152 (289)
T ss_pred Hh--------hchhhHHHHHHHHhcc---------------CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcC--
Confidence 44 7788888887766543 2334455556666677789999999999999988654
Q ss_pred cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHH
Q 000742 201 VSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQ---KYDEAILCYQKALN 277 (1313)
Q Consensus 201 ~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~kal~ 277 (1313)
...+|..++.+|...|+|++|.-++++.+-+.| .....+..+|.+++-+| +++-|.+||.+|++
T Consensus 153 -------D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P------~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 153 -------DQEAWHELAEIYLSEGDFEKAAFCLEELLLIQP------FNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred -------cHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCC------CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 467999999999999999999999999998866 67777788888887766 56789999999999
Q ss_pred HHHH
Q 000742 278 LAQS 281 (1313)
Q Consensus 278 ~~~~ 281 (1313)
+.+.
T Consensus 220 l~~~ 223 (289)
T KOG3060|consen 220 LNPK 223 (289)
T ss_pred hChH
Confidence 9884
No 170
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.70 E-value=1.5e-07 Score=93.22 Aligned_cols=108 Identities=11% Similarity=0.105 Sum_probs=96.4
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000742 162 LKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKK 241 (1313)
Q Consensus 162 ~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~ 241 (1313)
.|....+...+|..+...|++++|+..+++++... +....++..+|.+|...|++++|+.++++++.+.+
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p- 82 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD---------PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP- 82 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC---------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-
Confidence 45667889999999999999999999999998873 33568899999999999999999999999999865
Q ss_pred hchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccC
Q 000742 242 IEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMED 284 (1313)
Q Consensus 242 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~ 284 (1313)
.....++.+|.+|...|++++|+.+++++++..|....
T Consensus 83 -----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 83 -----DDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred -----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 67889999999999999999999999999999876543
No 171
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.69 E-value=2.6e-07 Score=97.61 Aligned_cols=121 Identities=17% Similarity=0.122 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHH
Q 000742 108 QQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKK 187 (1313)
Q Consensus 108 ~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~ 187 (1313)
.+..+-.-|.-...- ++|++|+..|.+|+++ .|..+..|.+.|.+|.++|+|+.|++
T Consensus 80 ~AE~LK~eGN~~m~~--------~~Y~eAv~kY~~AI~l---------------~P~nAVyycNRAAAy~~Lg~~~~AVk 136 (304)
T KOG0553|consen 80 LAESLKNEGNKLMKN--------KDYQEAVDKYTEAIEL---------------DPTNAVYYCNRAAAYSKLGEYEDAVK 136 (304)
T ss_pred HHHHHHHHHHHHHHh--------hhHHHHHHHHHHHHhc---------------CCCcchHHHHHHHHHHHhcchHHHHH
Confidence 344455566666655 9999999999999998 45668899999999999999999999
Q ss_pred HHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHH
Q 000742 188 FLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYD 266 (1313)
Q Consensus 188 ~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 266 (1313)
-.+.|+.+ ++....+|..||.+|..+|++++|++.|++|+++.+ .......+|..+-..+++..
T Consensus 137 Dce~Al~i---------Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP------~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 137 DCESALSI---------DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDP------DNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHhc---------ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCC------CcHHHHHHHHHHHHHhcCCC
Confidence 99999998 677899999999999999999999999999999987 44455555555554444443
No 172
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.67 E-value=2.2e-05 Score=90.48 Aligned_cols=310 Identities=14% Similarity=0.130 Sum_probs=153.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHH------HHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHH-------
Q 000742 30 WANVIGDILKNRGEYVEALKWFRI------DYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHL------- 96 (1313)
Q Consensus 30 ~~~~lg~~y~~~g~~~eAl~~~~~------al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal------- 96 (1313)
.|-.-|.+|.+..++++|+++|++ |+++..-..| ......-...|.-+...|+++.|+.+| -.|-
T Consensus 663 lydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp-~evv~lee~wg~hl~~~~q~daainhf-iea~~~~kaie 740 (1636)
T KOG3616|consen 663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFP-EEVVKLEEAWGDHLEQIGQLDAAINHF-IEANCLIKAIE 740 (1636)
T ss_pred HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCc-HHHhhHHHHHhHHHHHHHhHHHHHHHH-HHhhhHHHHHH
Confidence 455667777778888888888764 4444432211 112233345566677788888888877 3332
Q ss_pred ------------HHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHH
Q 000742 97 ------------ELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKE 164 (1313)
Q Consensus 97 ------------~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~ 164 (1313)
.+..+..|......-|-.++.-|... |+|+.|.+.|.++-..
T Consensus 741 aai~akew~kai~ildniqdqk~~s~yy~~iadhyan~--------~dfe~ae~lf~e~~~~------------------ 794 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANK--------GDFEIAEELFTEADLF------------------ 794 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccc--------hhHHHHHHHHHhcchh------------------
Confidence 22222222221112222333344333 5555555554443211
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHH------HHHHHH
Q 000742 165 YIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHI------EQDIII 238 (1313)
Q Consensus 165 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~------~kal~~ 238 (1313)
..--.+|.+.|++++|.+..++.. .+......|...+.-....|+|.+|.+.| .+|+.+
T Consensus 795 -----~dai~my~k~~kw~da~kla~e~~----------~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqm 859 (1636)
T KOG3616|consen 795 -----KDAIDMYGKAGKWEDAFKLAEECH----------GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQM 859 (1636)
T ss_pred -----HHHHHHHhccccHHHHHHHHHHhc----------CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHH
Confidence 111233444455555554443331 13334555666666666667766666655 455555
Q ss_pred HHHhchh------------hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHH
Q 000742 239 CKKIEHC------------QGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVM 306 (1313)
Q Consensus 239 ~~~~~~~------------~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~ 306 (1313)
+.+.+.. .....+...+|.-|...|+.+.|.+.|-+|-+..... +.|++-+.+
T Consensus 860 ydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~kaav---------------nmyk~s~lw 924 (1636)
T KOG3616|consen 860 YDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKAAV---------------NMYKASELW 924 (1636)
T ss_pred HHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHHHHH---------------HHhhhhhhH
Confidence 5543211 2334566778888888888888888887765433211 112222222
Q ss_pred HHHHHHH---------HHHHHHHHHHHHhhC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Q 000742 307 DELKKEE---------QNLKKLTRNMIIAKG-TSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDK 376 (1313)
Q Consensus 307 ~~a~~~~---------~~~~~l~~~l~~~~~-~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~ 376 (1313)
+++.... +....+ .++. ..+.+..+++....+..-.........|+-|.++ + .++..
T Consensus 925 ~dayriaktegg~n~~k~v~fl-----waksiggdaavkllnk~gll~~~id~a~d~~afd~afdl-------a-ri~~k 991 (1636)
T KOG3616|consen 925 EDAYRIAKTEGGANAEKHVAFL-----WAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDL-------A-RIAAK 991 (1636)
T ss_pred HHHHHHHhccccccHHHHHHHH-----HHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHH-------H-HHhhh
Confidence 2222110 000000 0011 1112222222211111111111222222222222 2 12233
Q ss_pred hhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Q 000742 377 GKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMY 410 (1313)
Q Consensus 377 ~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~ 410 (1313)
...+.++..++..+...|++++|-++|-+|+++.
T Consensus 992 ~k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 992 DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred ccCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 4456888999999999999999999999999764
No 173
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.66 E-value=9.9e-09 Score=103.73 Aligned_cols=126 Identities=25% Similarity=0.268 Sum_probs=36.0
Q ss_pred ceEEEccCCCCCHHHHHHHHhcccCCCCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHH-
Q 000742 891 DLTLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADAL- 969 (1313)
Q Consensus 891 l~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l- 969 (1313)
++.|+|.+|.|+... .+.. .+.+|+.|+||+|.|+.. +.+..++.|++|++++|.|+.. ...+
T Consensus 21 ~~~L~L~~n~I~~Ie--~L~~---~l~~L~~L~Ls~N~I~~l------~~l~~L~~L~~L~L~~N~I~~i-----~~~l~ 84 (175)
T PF14580_consen 21 LRELNLRGNQISTIE--NLGA---TLDKLEVLDLSNNQITKL------EGLPGLPRLKTLDLSNNRISSI-----SEGLD 84 (175)
T ss_dssp -----------------S--T---T-TT--EEE-TTS--S--------TT----TT--EEE--SS---S------CHHHH
T ss_pred ccccccccccccccc--chhh---hhcCCCEEECCCCCCccc------cCccChhhhhhcccCCCCCCcc-----ccchH
Confidence 345555555554332 1111 135667777777766643 2345566677777777766642 1112
Q ss_pred hcCCCccEEEeCCCCCCChhhHHHHHHhhccCCccceeecCCCCCChHHHHHHHHHhhcCCccEEEc
Q 000742 970 GAESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLML 1036 (1313)
Q Consensus 970 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~L~~L~L 1036 (1313)
..+++|++|+|++|.+-.... +..+..+++|+.|+|.+|.++....-...-+...|+|+.||-
T Consensus 85 ~~lp~L~~L~L~~N~I~~l~~----l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 85 KNLPNLQELYLSNNKISDLNE----LEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp HH-TT--EEE-TTS---SCCC----CGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred HhCCcCCEEECcCCcCCChHH----hHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 235667777777766322111 233445566666666666655432222222333455555553
No 174
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.57 E-value=6.4e-07 Score=104.46 Aligned_cols=198 Identities=16% Similarity=0.178 Sum_probs=156.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHH
Q 000742 31 ANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQR 110 (1313)
Q Consensus 31 ~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~ 110 (1313)
+-....+|...|+..+|.....+-++. +..+..|..+|.+. .--.+| ++|.++..... ++
T Consensus 427 w~~vi~CY~~lg~~~kaeei~~q~lek-------~~d~~lyc~LGDv~-------~d~s~y-EkawElsn~~s-----ar 486 (777)
T KOG1128|consen 427 WDPVILCYLLLGQHGKAEEINRQELEK-------DPDPRLYCLLGDVL-------HDPSLY-EKAWELSNYIS-----AR 486 (777)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHhcC-------CCcchhHHHhhhhc-------cChHHH-HHHHHHhhhhh-----HH
Confidence 556778888999999998888776651 22244555555554 445556 66666654432 34
Q ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000742 111 ACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLI 190 (1313)
Q Consensus 111 a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~ 190 (1313)
|.+.+|...+.. ++|++|.++++.++++ .|....+|+.+|.++.+.++++.|.++|.
T Consensus 487 A~r~~~~~~~~~--------~~fs~~~~hle~sl~~---------------nplq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 487 AQRSLALLILSN--------KDFSEADKHLERSLEI---------------NPLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHhhccccccc--------hhHHHHHHHHHHHhhc---------------CccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 555566655544 8999999999999998 55778999999999999999999999999
Q ss_pred HHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHH
Q 000742 191 RGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAIL 270 (1313)
Q Consensus 191 ~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 270 (1313)
.++.+ .|+.+.+|.|++..|...++-.+|...+++|++... .....+.|.-.+..+.|.+++|++
T Consensus 544 rcvtL---------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~------~~w~iWENymlvsvdvge~eda~~ 608 (777)
T KOG1128|consen 544 RCVTL---------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY------QHWQIWENYMLVSVDVGEFEDAIK 608 (777)
T ss_pred HHhhc---------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC------CCCeeeechhhhhhhcccHHHHHH
Confidence 99998 555789999999999999999999999999998753 556677788888899999999999
Q ss_pred HHHHHHHHHHHccChh
Q 000742 271 CYQKALNLAQSMEDED 286 (1313)
Q Consensus 271 ~~~kal~~~~~~~~~~ 286 (1313)
.|.+.+.+.....+..
T Consensus 609 A~~rll~~~~~~~d~~ 624 (777)
T KOG1128|consen 609 AYHRLLDLRKKYKDDE 624 (777)
T ss_pred HHHHHHHhhhhcccch
Confidence 9999999887766543
No 175
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=9.8e-06 Score=83.25 Aligned_cols=179 Identities=12% Similarity=-0.025 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHH
Q 000742 30 WANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQ 109 (1313)
Q Consensus 30 ~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a 109 (1313)
.|-....+....|+.+-|...+++.....+.. ..+-...|..+...|+|++|+++| +..++-.|.+.-
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S------~RV~~lkam~lEa~~~~~~A~e~y-~~lL~ddpt~~v----- 121 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGS------KRVGKLKAMLLEATGNYKEAIEYY-ESLLEDDPTDTV----- 121 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCC------hhHHHHHHHHHHHhhchhhHHHHH-HHHhccCcchhH-----
Confidence 35666677778899999999988876665332 566667889999999999999999 888875544321
Q ss_pred HHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000742 110 RACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFL 189 (1313)
Q Consensus 110 ~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~ 189 (1313)
++-.--.+...+ |+.-+|++.+.+-++.+ +...++|..++.+|...|+|++|.-.+
T Consensus 122 -~~KRKlAilka~--------GK~l~aIk~ln~YL~~F---------------~~D~EAW~eLaeiY~~~~~f~kA~fCl 177 (289)
T KOG3060|consen 122 -IRKRKLAILKAQ--------GKNLEAIKELNEYLDKF---------------MNDQEAWHELAEIYLSEGDFEKAAFCL 177 (289)
T ss_pred -HHHHHHHHHHHc--------CCcHHHHHHHHHHHHHh---------------cCcHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 222222223333 77778888777776662 345789999999999999999999999
Q ss_pred HHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHH
Q 000742 190 IRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELR---MWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELH 259 (1313)
Q Consensus 190 ~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g---~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~ 259 (1313)
++.+-+ .|.....+..+|.+++.+| +++-|.+||.+|+++.+ ....+++.+-.+-
T Consensus 178 EE~ll~---------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~------~~~ral~GI~lc~ 235 (289)
T KOG3060|consen 178 EELLLI---------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP------KNLRALFGIYLCG 235 (289)
T ss_pred HHHHHc---------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh------HhHHHHHHHHHHH
Confidence 999887 3445566777888877766 67889999999999977 4455555544433
No 176
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=7.1e-08 Score=100.40 Aligned_cols=195 Identities=20% Similarity=0.223 Sum_probs=113.3
Q ss_pred CCCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCCCCCChhhHHHHH
Q 000742 916 FTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLL 995 (1313)
Q Consensus 916 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~ 995 (1313)
++.+++|||.+|.|++- ..++.++.++|.|++|+|+.|.+... +..++ ....+|++|-|.+.. +... ..-
T Consensus 70 ~~~v~elDL~~N~iSdW--seI~~ile~lP~l~~LNls~N~L~s~-I~~lp---~p~~nl~~lVLNgT~-L~w~---~~~ 139 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDW--SEIGAILEQLPALTTLNLSCNSLSSD-IKSLP---LPLKNLRVLVLNGTG-LSWT---QST 139 (418)
T ss_pred hhhhhhhhcccchhccH--HHHHHHHhcCccceEeeccCCcCCCc-cccCc---ccccceEEEEEcCCC-CChh---hhh
Confidence 35677777777777653 23556666777777777777766531 11111 123456666666555 2222 222
Q ss_pred HhhccCCccceeecCCCCCChHHHHHHHHHhhcCCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCCChhHH
Q 000742 996 VKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCI 1075 (1313)
Q Consensus 996 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 1075 (1313)
..+..+|.+++|.+|.|+ ++.+++..|.+.+ ..+.+.+|.+..|...--
T Consensus 140 s~l~~lP~vtelHmS~N~-----------------~rq~n~Dd~c~e~------------~s~~v~tlh~~~c~~~~w-- 188 (418)
T KOG2982|consen 140 SSLDDLPKVTELHMSDNS-----------------LRQLNLDDNCIED------------WSTEVLTLHQLPCLEQLW-- 188 (418)
T ss_pred hhhhcchhhhhhhhccch-----------------hhhhccccccccc------------cchhhhhhhcCCcHHHHH--
Confidence 333455555566555553 3333444443332 113455666555542211
Q ss_pred HHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhcCCCCceeEEEeecCCCCHHHHHHHHHHhhcCCCccEEEccCCCC
Q 000742 1076 HKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNAS 1155 (1313)
Q Consensus 1076 ~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~N~i 1155 (1313)
.........++++..+.+..|+|.+.....-.+ +...+..|+|+.|+|.... -.+.|.+.+.|..|.+++|.+
T Consensus 189 ~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se----~~p~~~~LnL~~~~idswa---svD~Ln~f~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 189 LNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSE----PFPSLSCLNLGANNIDSWA---SVDALNGFPQLVDLRVSENPL 261 (418)
T ss_pred HHHHhHHhhcccchheeeecCcccchhhcccCC----CCCcchhhhhcccccccHH---HHHHHcCCchhheeeccCCcc
Confidence 112333345788888899999887654433222 2334778999999998763 456788899999999999998
Q ss_pred Chh
Q 000742 1156 KEL 1158 (1313)
Q Consensus 1156 ~~~ 1158 (1313)
.+.
T Consensus 262 ~d~ 264 (418)
T KOG2982|consen 262 SDP 264 (418)
T ss_pred ccc
Confidence 875
No 177
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.51 E-value=2e-06 Score=89.43 Aligned_cols=162 Identities=14% Similarity=0.097 Sum_probs=130.8
Q ss_pred chhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHH
Q 000742 67 LLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKL 146 (1313)
Q Consensus 67 ~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l 146 (1313)
...+ ..++..+...|+-+.+..+. .++....++.. ..+..+|...... |+|.+|+..++++..+
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~-~~~~~~~~~d~------~ll~~~gk~~~~~--------g~~~~A~~~~rkA~~l 129 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVL-QKSAIAYPKDR------ELLAAQGKNQIRN--------GNFGEAVSVLRKAARL 129 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHH-hhhhccCcccH------HHHHHHHHHHHHh--------cchHHHHHHHHHHhcc
Confidence 3555 88888899999999988888 77665544432 2233477777766 9999999999999877
Q ss_pred HHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHH
Q 000742 147 AQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWD 226 (1313)
Q Consensus 147 ~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~ 226 (1313)
.|....+|+.+|.+|.+.|++++|...|.+++++... ...+..|+|..|.-.|+++
T Consensus 130 ---------------~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~---------~p~~~nNlgms~~L~gd~~ 185 (257)
T COG5010 130 ---------------APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN---------EPSIANNLGMSLLLRGDLE 185 (257)
T ss_pred ---------------CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC---------CchhhhhHHHHHHHcCCHH
Confidence 3456789999999999999999999999999999554 4568899999999999999
Q ss_pred HHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 000742 227 KSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQK 274 (1313)
Q Consensus 227 ~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~k 274 (1313)
.|..++..+..... ....+..+++.+...+|++++|.....+
T Consensus 186 ~A~~lll~a~l~~~------ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 186 DAETLLLPAYLSPA------ADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHHHHhCCC------CchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 99999998877644 5678889999999999999998776554
No 178
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.51 E-value=1.1e-06 Score=90.48 Aligned_cols=135 Identities=16% Similarity=0.085 Sum_probs=103.1
Q ss_pred hhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChH
Q 000742 6 MQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFK 85 (1313)
Q Consensus 6 ~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~ 85 (1313)
..+..+...+....+..+....+..++.+|.++...|++++|+..|++++.+.+. ....+.++..+|.+|...|+++
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~---~~~~~~~~~~lg~~~~~~g~~~ 89 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID---PYDRSYILYNIGLIHTSNGEHT 89 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc---chhhHHHHHHHHHHHHHcCCHH
Confidence 3455666666555556666777888999999999999999999999999988532 2234568999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhcc
Q 000742 86 DALIYQVKKHLELAKDASD-LVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKE 152 (1313)
Q Consensus 86 ~A~~~~~~kal~l~~~~~~-~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~ 152 (1313)
+|+.++ ++++.+.+.... ....+.++..+|..+..+ |+++.|+.++.+++..+++...
T Consensus 90 eA~~~~-~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~--------g~~~~A~~~~~~a~~~~~~a~~ 148 (168)
T CHL00033 90 KALEYY-FQALERNPFLPQALNNMAVICHYRGEQAIEQ--------GDSEIAEAWFDQAAEYWKQAIA 148 (168)
T ss_pred HHHHHH-HHHHHhCcCcHHHHHHHHHHHHHhhHHHHHc--------ccHHHHHHHHHHHHHHHHHHHH
Confidence 999999 999998665432 122334444555554466 8999999999999988777543
No 179
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.49 E-value=3.8e-06 Score=86.84 Aligned_cols=98 Identities=19% Similarity=0.168 Sum_probs=78.1
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHH
Q 000742 15 YRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKK 94 (1313)
Q Consensus 15 l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~k 94 (1313)
+......++....+..++.+|..|...|++++|+.+|++++.+.+.. .....++..+|.+|...|++++|+.++ ++
T Consensus 22 ~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~-~~ 97 (172)
T PRK02603 22 ILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP---NDRSYILYNMGIIYASNGEHDKALEYY-HQ 97 (172)
T ss_pred HHHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc---chHHHHHHHHHHHHHHcCCHHHHHHHH-HH
Confidence 34445556677778889999999999999999999999999876432 223578999999999999999999999 99
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 000742 95 HLELAKDASDLVEQQRACTQLGRTYYEM 122 (1313)
Q Consensus 95 al~l~~~~~~~~~~a~a~~~lg~~y~~l 122 (1313)
++...+.. ..++..+|.+|..+
T Consensus 98 al~~~p~~------~~~~~~lg~~~~~~ 119 (172)
T PRK02603 98 ALELNPKQ------PSALNNIAVIYHKR 119 (172)
T ss_pred HHHhCccc------HHHHHHHHHHHHHc
Confidence 99986654 24567778888766
No 180
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.48 E-value=2.2e-06 Score=83.34 Aligned_cols=100 Identities=12% Similarity=0.028 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 000742 109 QRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKF 188 (1313)
Q Consensus 109 a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~ 188 (1313)
....+.+|..++.. |++++|+..|+-...+ .|..+..|++||.++..+|+|++|+..
T Consensus 35 l~~lY~~A~~ly~~--------G~l~~A~~~f~~L~~~---------------Dp~~~~y~~gLG~~~Q~~g~~~~AI~a 91 (157)
T PRK15363 35 LNTLYRYAMQLMEV--------KEFAGAARLFQLLTIY---------------DAWSFDYWFRLGECCQAQKHWGEAIYA 91 (157)
T ss_pred HHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHh---------------CcccHHHHHHHHHHHHHHhhHHHHHHH
Confidence 35567888888877 9999999999999887 567899999999999999999999999
Q ss_pred HHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742 189 LIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICK 240 (1313)
Q Consensus 189 ~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~ 240 (1313)
|.+|+.+. +..++.++++|.+|...|+.+.|++.|+.|+..+.
T Consensus 92 Y~~A~~L~---------~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 92 YGRAAQIK---------IDAPQAPWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHhcC---------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 99999983 34678999999999999999999999999999983
No 181
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.48 E-value=1.8e-06 Score=88.95 Aligned_cols=112 Identities=14% Similarity=-0.011 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000742 164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIE 243 (1313)
Q Consensus 164 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~ 243 (1313)
..+..++.+|.++...|++++|+..|++++.+.+. +...+.++.++|.+|...|++++|+.++++++.+.+...
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~------~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~ 106 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID------PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLP 106 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc------chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Confidence 56889999999999999999999999999988432 344567999999999999999999999999999865321
Q ss_pred h-hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 000742 244 H-CQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQS 281 (1313)
Q Consensus 244 ~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~ 281 (1313)
. ....+.++..+|..+..+|+++.|+.++++++.....
T Consensus 107 ~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 145 (168)
T CHL00033 107 QALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQ 145 (168)
T ss_pred HHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 1 1223334444444444889999888888888776554
No 182
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=6.8e-05 Score=76.00 Aligned_cols=205 Identities=15% Similarity=0.133 Sum_probs=136.8
Q ss_pred cCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHH
Q 000742 179 LDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGEL 258 (1313)
Q Consensus 179 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~ 258 (1313)
.+++++|.+.|.+|-. .|...++|..|-..|.++.+...+.++..+.+..|...+.+
T Consensus 27 ~~k~eeAadl~~~Aan-----------------------~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~c 83 (288)
T KOG1586|consen 27 SNKYEEAAELYERAAN-----------------------MYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANC 83 (288)
T ss_pred CcchHHHHHHHHHHHH-----------------------HHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 3577777777766644 44455677788888888888888877777888888888888
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHH
Q 000742 259 HYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQ 338 (1313)
Q Consensus 259 ~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~ 338 (1313)
|.+. ++++|+.++++++++..+++... ..+..+..++.+++
T Consensus 84 ykk~-~~~eAv~cL~~aieIyt~~Grf~-~aAk~~~~iaEiyE------------------------------------- 124 (288)
T KOG1586|consen 84 YKKV-DPEEAVNCLEKAIEIYTDMGRFT-MAAKHHIEIAEIYE------------------------------------- 124 (288)
T ss_pred hhcc-ChHHHHHHHHHHHHHHHhhhHHH-HHHhhhhhHHHHHh-------------------------------------
Confidence 8765 99999999999999887654321 11222222222221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCC-ch
Q 000742 339 QNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGN-LE 417 (1313)
Q Consensus 339 ~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~-~~ 417 (1313)
....++++|+.+|+++-+.++.-.....--..+...|..-...++|.+|+..|++.....-...- ..
T Consensus 125 ------------sdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKy 192 (288)
T KOG1586|consen 125 ------------SDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKY 192 (288)
T ss_pred ------------hhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHh
Confidence 12356667777777777766554444444467777888888899999999999987643221111 11
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChh
Q 000742 418 GQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPS 457 (1313)
Q Consensus 418 ~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~~ 457 (1313)
..-.-++.-|.++....+.-.|...+++..++.....+.+
T Consensus 193 s~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsR 232 (288)
T KOG1586|consen 193 SAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSR 232 (288)
T ss_pred HHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccH
Confidence 2223355677888888898888888888777665544443
No 183
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.45 E-value=1.1e-06 Score=86.97 Aligned_cols=112 Identities=17% Similarity=0.130 Sum_probs=97.3
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHH
Q 000742 13 RAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQV 92 (1313)
Q Consensus 13 ~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~ 92 (1313)
..|+++++..|....+ .+.+|..++..|++++|+..|++++...+ ....++..+|.+|..+|++++|..++
T Consensus 4 ~~~~~~l~~~p~~~~~--~~~~a~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~- 74 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQ--IYALAYNLYQQGRYDEALKLFQLLAAYDP------YNSRYWLGLAACCQMLKEYEEAIDAY- 74 (135)
T ss_pred hhHHHHHcCChhhHHH--HHHHHHHHHHcccHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3577888888887655 88999999999999999999999988753 23789999999999999999999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHH
Q 000742 93 KKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLA 147 (1313)
Q Consensus 93 ~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~ 147 (1313)
++++++.+... ..++.+|.+|... |++++|+.+|++++++.
T Consensus 75 ~~~~~~~p~~~------~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 75 ALAAALDPDDP------RPYFHAAECLLAL--------GEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHhcCCCCh------HHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhc
Confidence 99999876543 4678999999988 99999999999999883
No 184
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.44 E-value=2.1e-06 Score=88.74 Aligned_cols=105 Identities=19% Similarity=0.146 Sum_probs=83.2
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000742 162 LKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKK 241 (1313)
Q Consensus 162 ~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~ 241 (1313)
.+..+.+++.+|..|...|++++|+.+|+++++..+. .+....++.++|.+|...|++++|+.++++++.+.+
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p- 103 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEED------PNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP- 103 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc------cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-
Confidence 3467889999999999999999999999999987443 333567899999999999999999999999999866
Q ss_pred hchhhhHHHHHHHHHHHHHHhcC-------HHHHHHHHHHHHHH
Q 000742 242 IEHCQGEAKGYINLGELHYRVQK-------YDEAILCYQKALNL 278 (1313)
Q Consensus 242 ~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~kal~~ 278 (1313)
.....+..+|.+|...|+ +++|+..+++|++.
T Consensus 104 -----~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~ 142 (172)
T PRK02603 104 -----KQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEY 142 (172)
T ss_pred -----ccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHH
Confidence 456677778888877666 44444444444443
No 185
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.42 E-value=1.3e-06 Score=101.25 Aligned_cols=101 Identities=14% Similarity=0.199 Sum_probs=90.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhH
Q 000742 169 HNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGE 248 (1313)
Q Consensus 169 ~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~ 248 (1313)
+...|..++..|+|++|+.+|.+|+++.+ ....++.++|.+|..+|++++|+..+++++.+.+ ..
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P---------~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P------~~ 69 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDP---------NNAELYADRAQANIKLGNFTEAVADANKAIELDP------SL 69 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc------CC
Confidence 45567888889999999999999999843 3567899999999999999999999999999976 77
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccC
Q 000742 249 AKGYINLGELHYRVQKYDEAILCYQKALNLAQSMED 284 (1313)
Q Consensus 249 ~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~ 284 (1313)
+.+|+.+|.+|+.+|+|++|+.+|++++++.+....
T Consensus 70 ~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~ 105 (356)
T PLN03088 70 AKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSR 105 (356)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 889999999999999999999999999999886543
No 186
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.40 E-value=1.2e-06 Score=78.22 Aligned_cols=84 Identities=15% Similarity=0.223 Sum_probs=69.1
Q ss_pred chhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccC
Q 000742 4 DEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEH 83 (1313)
Q Consensus 4 ~~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 83 (1313)
++++++.|+..++++++..|.......++.+|.+|+..|+|++|+.++++ .+..+.. ....+.+|.++..+|+
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~------~~~~~l~a~~~~~l~~ 73 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN------PDIHYLLARCLLKLGK 73 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH------HHHHHHHHHHHHHTT-
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC------HHHHHHHHHHHHHhCC
Confidence 46899999999999999988532555577899999999999999999998 5555322 6777888999999999
Q ss_pred hHHHHHHHHHHH
Q 000742 84 FKDALIYQVKKH 95 (1313)
Q Consensus 84 ~~~A~~~~~~ka 95 (1313)
|++|++.+ +++
T Consensus 74 y~eAi~~l-~~~ 84 (84)
T PF12895_consen 74 YEEAIKAL-EKA 84 (84)
T ss_dssp HHHHHHHH-HHH
T ss_pred HHHHHHHH-hcC
Confidence 99999999 765
No 187
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.39 E-value=2e-06 Score=82.97 Aligned_cols=108 Identities=12% Similarity=0.106 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchh
Q 000742 166 IDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHC 245 (1313)
Q Consensus 166 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~ 245 (1313)
+.+++.+|..+...|++++|++.|.+++...+. .+....+++.+|.++...|++++|+.+|++++...+. .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---~ 72 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPK------STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK---S 72 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC---C
Confidence 357899999999999999999999999987433 3344678899999999999999999999999987652 2
Q ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc
Q 000742 246 QGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSM 282 (1313)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~ 282 (1313)
+....++..+|.++...|++++|+.+++++++..|..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 2346789999999999999999999999999998754
No 188
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.39 E-value=2.5e-06 Score=76.24 Aligned_cols=83 Identities=23% Similarity=0.294 Sum_probs=68.4
Q ss_pred cCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHH
Q 000742 179 LDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGEL 258 (1313)
Q Consensus 179 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~ 258 (1313)
+|+|++|+.+++++++..+. .+ ....++.+|.+|+..|+|++|+..+++ ....+ ......+.+|.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~------~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~------~~~~~~~l~a~~ 67 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT------NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP------SNPDIHYLLARC 67 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG------TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH------CHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCC------Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC------CCHHHHHHHHHH
Confidence 58999999999999998543 22 556778899999999999999999999 55544 456777788999
Q ss_pred HHHhcCHHHHHHHHHHH
Q 000742 259 HYRVQKYDEAILCYQKA 275 (1313)
Q Consensus 259 ~~~~g~~~~A~~~~~ka 275 (1313)
+..+|+|++|++++++|
T Consensus 68 ~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 68 LLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHTT-HHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHhcC
Confidence 99999999999999875
No 189
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.37 E-value=0.00018 Score=80.24 Aligned_cols=126 Identities=16% Similarity=0.094 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHhch
Q 000742 166 IDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDII-ICKKIEH 244 (1313)
Q Consensus 166 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~-~~~~~~~ 244 (1313)
+.+....+..++..|+|.+|.+.+...--....-......-.....|.++|.+++.+|.|.-+..+|.+|+. .+.+...
T Consensus 240 ~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~ 319 (696)
T KOG2471|consen 240 SMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRN 319 (696)
T ss_pred cHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhc
Confidence 467778889999999999999987764222111000001112455678999999999999999999999996 4444321
Q ss_pred -----------hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHH
Q 000742 245 -----------CQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQ 291 (1313)
Q Consensus 245 -----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~ 291 (1313)
......++|+.|..|...|++-.|.++|.++...+...+..|..++.
T Consensus 320 g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAE 377 (696)
T KOG2471|consen 320 GLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAE 377 (696)
T ss_pred cCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 12235689999999999999999999999999999888776655544
No 190
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=1.7e-05 Score=82.76 Aligned_cols=214 Identities=14% Similarity=0.074 Sum_probs=144.3
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHH
Q 000742 220 MELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETV 299 (1313)
Q Consensus 220 ~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~ 299 (1313)
.+-.+|+.|++.+.--.+..+ .....+..+|.+|+...+|..|..+|++.-...|+........++.+++.+.+
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p------~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ 94 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSP------RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIY 94 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCc------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhccc
Confidence 445566677666655544433 34456677777888888888888888877777777666555556666666666
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHhhCCchHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742 300 KKAIEVMDELKK---EEQNLKKLTRNMIIAKGTSQERKYLLQQ------NASLDRLIEKSSMIFAWLKHCEYAKRKKRIA 370 (1313)
Q Consensus 300 ~~a~~~~~~a~~---~~~~~~~l~~~l~~~~~~~~~a~~~~~~------~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~ 370 (1313)
..|+.......+ .......+...+....++....+.+.++ +..+.+.|......++|+.|.+-++++++..
T Consensus 95 ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvs 174 (459)
T KOG4340|consen 95 ADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVS 174 (459)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhc
Confidence 666665554433 2333445555555555555555666555 3457778888889999999999999998764
Q ss_pred HHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH------------------hCC-----chhHHHHHHHHH
Q 000742 371 SELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKS------------------IGN-----LEGQALAKVNMG 427 (1313)
Q Consensus 371 ~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~------------------~~~-----~~~~~~~~~~lg 427 (1313)
. ..+-.-+++|.++++.|+|+.|+++..+.++---. +++ ......++...+
T Consensus 175 G------yqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKa 248 (459)
T KOG4340|consen 175 G------YQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKA 248 (459)
T ss_pred C------CCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhh
Confidence 2 23356678999999999999999998887753211 011 012345677788
Q ss_pred HHHHHcCCHHHHHHHHHH
Q 000742 428 NVLDSNGDWAGALDAFQE 445 (1313)
Q Consensus 428 ~~y~~~g~~~~A~~~~~k 445 (1313)
-++++.|+++.|.+.+..
T Consensus 249 AIeyq~~n~eAA~eaLtD 266 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTD 266 (459)
T ss_pred hhhhhcccHHHHHHHhhc
Confidence 899999999988776543
No 191
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.36 E-value=9.8e-07 Score=75.50 Aligned_cols=66 Identities=30% Similarity=0.480 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Q 000742 209 SRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQ-KYDEAILCYQKALNLAQ 280 (1313)
Q Consensus 209 ~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~kal~~~~ 280 (1313)
+.+|..+|.++...|++++|+.+|++++++.+ ..+.+++++|.+|..+| ++++|++++++++++.|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p------~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP------NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST------THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 57899999999999999999999999999976 78899999999999999 79999999999999864
No 192
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.35 E-value=5.3e-05 Score=75.73 Aligned_cols=104 Identities=15% Similarity=0.097 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHH
Q 000742 105 LVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEE 184 (1313)
Q Consensus 105 ~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~ 184 (1313)
..+.+..++..|..|-.+ |-+.-|.-.|.+++.+ .|.++.+++.+|..+...|+|+.
T Consensus 61 ~eeRA~l~fERGvlYDSl--------GL~~LAR~DftQaLai---------------~P~m~~vfNyLG~Yl~~a~~fda 117 (297)
T COG4785 61 DEERAQLLFERGVLYDSL--------GLRALARNDFSQALAI---------------RPDMPEVFNYLGIYLTQAGNFDA 117 (297)
T ss_pred hHHHHHHHHHhcchhhhh--------hHHHHHhhhhhhhhhc---------------CCCcHHHHHHHHHHHHhcccchH
Confidence 344566677888888877 8888888888888887 56778899999999999999999
Q ss_pred HHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742 185 AKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICK 240 (1313)
Q Consensus 185 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~ 240 (1313)
|.+.|...+++ +|..-.+..|.|..++.-|+|.-|.+.+.+-.+..+
T Consensus 118 a~eaFds~~EL---------Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~ 164 (297)
T COG4785 118 AYEAFDSVLEL---------DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDP 164 (297)
T ss_pred HHHHhhhHhcc---------CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCC
Confidence 99999998888 444567888888888889999998888876665544
No 193
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.35 E-value=1.5e-05 Score=79.70 Aligned_cols=100 Identities=23% Similarity=0.213 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000742 164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIE 243 (1313)
Q Consensus 164 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~ 243 (1313)
.-..+...+|.+++..|++++|...|++++... .++.....+...+|.++...|++++|+..++.. .
T Consensus 46 ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~------~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-------~ 112 (145)
T PF09976_consen 46 YAALAALQLAKAAYEQGDYDEAKAALEKALANA------PDPELKPLARLRLARILLQQGQYDEALATLQQI-------P 112 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC------CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-------c
Confidence 456788999999999999999999999999864 235566788999999999999999999998662 2
Q ss_pred hhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 000742 244 HCQGEAKGYINLGELHYRVQKYDEAILCYQKAL 276 (1313)
Q Consensus 244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal 276 (1313)
+....+.++..+|.+|...|++++|+..|++|+
T Consensus 113 ~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 113 DEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 234567788899999999999999999999885
No 194
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.32 E-value=1.5e-06 Score=107.13 Aligned_cols=250 Identities=24% Similarity=0.283 Sum_probs=146.6
Q ss_pred HhhcCCCcCEEEecCCC-CCHHHHHHHHHHHHhcccCccceEEEccCC--CCCHHHHHHHHhcccCCCCcCEEEecCCC-
Q 000742 853 ALHTHKTVALLDLSHNL-LGNGTMEKLQQFFISSCQNYVDLTLDLHCN--RFGPTTLFQICECPVLFTRLGVLNLSGNR- 928 (1313)
Q Consensus 853 ~L~~~~~L~~L~Ls~n~-l~~~~~~~L~~~l~~~~~~~~l~~L~Ls~n--~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~- 928 (1313)
.+..++.|+.|.+.++. +++.+...+.. ..+.++.|+++.+ .++..+..... ....+++|+.|+|+.+.
T Consensus 183 l~~~~~~L~~l~l~~~~~~~~~~~~~~~~------~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~~~~L~~l~l~~~~~ 255 (482)
T KOG1947|consen 183 LLSSCPLLKRLSLSGCSKITDDSLDALAL------KCPNLEELDLSGCCLLITLSPLLLLL-LLSICRKLKSLDLSGCGL 255 (482)
T ss_pred HHhhCchhhHhhhcccccCChhhHHHHHh------hCchhheecccCcccccccchhHhhh-hhhhcCCcCccchhhhhc
Confidence 33446888888888875 77766444443 2566788888862 33333321111 33446899999999987
Q ss_pred CChhHHHHHHHHHhcCCCCcEEEeecCC-CCHHHHHHHHHHHhcCCCccEEEeCCCCCCChhhHHHHHHhhccCCcccee
Q 000742 929 LTDACGSYLSTILKNCKVLYSLNIENCS-ITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSEL 1007 (1313)
Q Consensus 929 l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~~~~L~~L 1007 (1313)
+++.|+..++.. |++|++|.+.+|. +++.++..++ ..+++|++|+|+++..+++.++..+.. ++++|+.|
T Consensus 256 isd~~l~~l~~~---c~~L~~L~l~~c~~lt~~gl~~i~---~~~~~L~~L~l~~c~~~~d~~l~~~~~---~c~~l~~l 326 (482)
T KOG1947|consen 256 VTDIGLSALASR---CPNLETLSLSNCSNLTDEGLVSIA---ERCPSLRELDLSGCHGLTDSGLEALLK---NCPNLREL 326 (482)
T ss_pred cCchhHHHHHhh---CCCcceEccCCCCccchhHHHHHH---HhcCcccEEeeecCccchHHHHHHHHH---hCcchhhh
Confidence 899887766654 8899999988887 8988888776 567889999999998666665555533 46666665
Q ss_pred ecCCCCCChHHHHHHHHHhhcCCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCCChhHHHHHHHHHhcCCC
Q 000742 1008 NLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHG 1087 (1313)
Q Consensus 1008 ~Ls~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~ 1087 (1313)
.+....- +..++.+.+........ ..+.......++.|+.+.|..+.+++.+... .+..++.
T Consensus 327 ~~~~~~~-------------c~~l~~~~l~~~~~~~~--d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~---~l~gc~~ 388 (482)
T KOG1947|consen 327 KLLSLNG-------------CPSLTDLSLSGLLTLTS--DDLAELILRSCPKLTDLSLSYCGISDLGLEL---SLRGCPN 388 (482)
T ss_pred hhhhcCC-------------CccHHHHHHHHhhccCc--hhHhHHHHhcCCCcchhhhhhhhccCcchHH---HhcCCcc
Confidence 5444321 11122222222211110 1122333345677888888887766554311 1223333
Q ss_pred ccEEEccCCCCChHHHHHHHHHhcCCCCceeEEEeecCC-CCHHHHHHHHHHhhcCCCccEEEccCCC
Q 000742 1088 ILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQ-LGLAGVLQLIKALSENDTLEELNLADNA 1154 (1313)
Q Consensus 1088 L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-i~~~g~~~l~~~l~~~~~L~~L~Ls~N~ 1154 (1313)
| + .+....... ...++.|+++.|. .++.++..+... +.++..+++.+..
T Consensus 389 l----------~-~~l~~~~~~----~~~l~~L~l~~~~~~t~~~l~~~~~~---~~~~~~l~~~~~~ 438 (482)
T KOG1947|consen 389 L----------T-ESLELRLCR----SDSLRVLNLSDCRLVTDKGLRCLADS---CSNLKDLDLSGCR 438 (482)
T ss_pred c----------c-hHHHHHhcc----CCccceEecccCccccccchHHHhhh---hhccccCCccCcc
Confidence 3 2 222222221 1127888888886 444444333222 5667777777764
No 195
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.31 E-value=1.9e-06 Score=73.74 Aligned_cols=66 Identities=24% Similarity=0.438 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHH
Q 000742 166 IDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELR-MWDKSREHIEQDIIICK 240 (1313)
Q Consensus 166 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g-~~~~A~~~~~kal~~~~ 240 (1313)
+.+|..+|..+...|++++|+.+|.+++++ .+..+.+++++|.+|..+| ++++|++++++++++.|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~---------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL---------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH---------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 678999999999999999999999999999 4446889999999999999 79999999999998743
No 196
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=1.2e-05 Score=89.09 Aligned_cols=145 Identities=15% Similarity=0.220 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000742 112 CTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIR 191 (1313)
Q Consensus 112 ~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~ 191 (1313)
.-.-|..|+.. |+|..|...|++|+.........+.............++.|+|.+|.++++|.+|+....+
T Consensus 211 ~ke~Gn~~fK~--------gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~k 282 (397)
T KOG0543|consen 211 KKERGNVLFKE--------GKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNK 282 (397)
T ss_pred HHHhhhHHHhh--------chHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHH
Confidence 45668888877 9999999999999988664322221111112223445677777777777777777777777
Q ss_pred HHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHH-HHH
Q 000742 192 GLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDE-AIL 270 (1313)
Q Consensus 192 al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~ 270 (1313)
+|.+ .+....+++..|.+|..+|+|+.|+..|++|+++.| ....+...+..+..+..++.+ ..+
T Consensus 283 vLe~---------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P------~Nka~~~el~~l~~k~~~~~~kekk 347 (397)
T KOG0543|consen 283 VLEL---------DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEP------SNKAARAELIKLKQKIREYEEKEKK 347 (397)
T ss_pred HHhc---------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776 333466777777777777777777777777777766 344445555555544444333 255
Q ss_pred HHHHHHHHH
Q 000742 271 CYQKALNLA 279 (1313)
Q Consensus 271 ~~~kal~~~ 279 (1313)
.|.+++...
T Consensus 348 ~y~~mF~k~ 356 (397)
T KOG0543|consen 348 MYANMFAKL 356 (397)
T ss_pred HHHHHhhcc
Confidence 555555433
No 197
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.28 E-value=6.4e-08 Score=109.50 Aligned_cols=195 Identities=23% Similarity=0.268 Sum_probs=118.8
Q ss_pred CCeEEecCCCCCcCCHHHHHHHhhcCCCcCEEEecCCCCCH--HHHHHHHHHHHhcccCccceEEEccCCCCCHHHHHHH
Q 000742 832 EDEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLLGN--GTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQI 909 (1313)
Q Consensus 832 ~~~l~l~~~~l~~~~~~~l~~~L~~~~~L~~L~Ls~n~l~~--~~~~~L~~~l~~~~~~~~l~~L~Ls~n~l~~~~~~~l 909 (1313)
...|.|++-.+..-....... ....-...||+.|++.. ..+..+.. +..|.|..|.|..+.. .+
T Consensus 52 sg~l~Ls~rrlk~fpr~a~~~---~ltdt~~aDlsrNR~~elp~~~~~f~~----------Le~liLy~n~~r~ip~-~i 117 (722)
T KOG0532|consen 52 SGRLLLSGRRLKEFPRGAASY---DLTDTVFADLSRNRFSELPEEACAFVS----------LESLILYHNCIRTIPE-AI 117 (722)
T ss_pred hcccccccchhhcCCCccccc---cccchhhhhccccccccCchHHHHHHH----------HHHHHHHhccceecch-hh
Confidence 345777777665443222211 22345678888888654 22333322 3455666666644433 34
Q ss_pred HhcccCCCCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCCCCCChh
Q 000742 910 CECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGN 989 (1313)
Q Consensus 910 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 989 (1313)
+.+ ..|+.|||+.|+++- ++..+..|+ |+.|-+++|+++ .++..+....+|..||.+.|.+
T Consensus 118 ~~L----~~lt~l~ls~NqlS~-----lp~~lC~lp-Lkvli~sNNkl~-----~lp~~ig~~~tl~~ld~s~nei---- 178 (722)
T KOG0532|consen 118 CNL----EALTFLDLSSNQLSH-----LPDGLCDLP-LKVLIVSNNKLT-----SLPEEIGLLPTLAHLDVSKNEI---- 178 (722)
T ss_pred hhh----hHHHHhhhccchhhc-----CChhhhcCc-ceeEEEecCccc-----cCCcccccchhHHHhhhhhhhh----
Confidence 443 678999999998874 667777787 999999999888 5666666677888888888873
Q ss_pred hHHHHHHhhccCCccceeecCCCCCChHHHHHHHHHhhcCCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCC
Q 000742 990 AITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCG 1069 (1313)
Q Consensus 990 ~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 1069 (1313)
..++..+..+.+|+.|++..|++... .+.+. .-.|.+||+|+|+
T Consensus 179 --~slpsql~~l~slr~l~vrRn~l~~l--------------------------------p~El~--~LpLi~lDfScNk 222 (722)
T KOG0532|consen 179 --QSLPSQLGYLTSLRDLNVRRNHLEDL--------------------------------PEELC--SLPLIRLDFSCNK 222 (722)
T ss_pred --hhchHHhhhHHHHHHHHHhhhhhhhC--------------------------------CHHHh--CCceeeeecccCc
Confidence 44555555555666666665554321 12221 1145666666666
Q ss_pred CChhHHHHHHHHHhcCCCccEEEccCCCCCh
Q 000742 1070 LESTCIHKFTASVSLVHGILELNLGGNPIMK 1100 (1313)
Q Consensus 1070 l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~ 1100 (1313)
|+.. +-.|..++.|++|-|.+|++..
T Consensus 223 is~i-----Pv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 223 ISYL-----PVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred eeec-----chhhhhhhhheeeeeccCCCCC
Confidence 6543 4455666677777777777663
No 198
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.26 E-value=2.5e-05 Score=88.12 Aligned_cols=132 Identities=15% Similarity=0.093 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000742 110 RACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFL 189 (1313)
Q Consensus 110 ~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~ 189 (1313)
.+.|..+..++.. +++++|...+...++. .|+.+..+...+.++...++.++|.+.+
T Consensus 307 aa~YG~A~~~~~~--------~~~d~A~~~l~~L~~~---------------~P~N~~~~~~~~~i~~~~nk~~~A~e~~ 363 (484)
T COG4783 307 AAQYGRALQTYLA--------GQYDEALKLLQPLIAA---------------QPDNPYYLELAGDILLEANKAKEAIERL 363 (484)
T ss_pred HHHHHHHHHHHHh--------cccchHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHcCChHHHHHHH
Confidence 4667777777776 8888888888775444 2234566777788888888888888888
Q ss_pred HHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHH
Q 000742 190 IRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAI 269 (1313)
Q Consensus 190 ~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 269 (1313)
++++... |.......++|.+|...|++.+|+..++..+.-.+ ..+..|..||..|..+|+..+|.
T Consensus 364 ~kal~l~---------P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p------~dp~~w~~LAqay~~~g~~~~a~ 428 (484)
T COG4783 364 KKALALD---------PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP------EDPNGWDLLAQAYAELGNRAEAL 428 (484)
T ss_pred HHHHhcC---------CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC------CCchHHHHHHHHHHHhCchHHHH
Confidence 8888773 33456777888888888888888888777766544 66777777777777777777777
Q ss_pred HHHHHHHHHH
Q 000742 270 LCYQKALNLA 279 (1313)
Q Consensus 270 ~~~~kal~~~ 279 (1313)
..+.+.....
T Consensus 429 ~A~AE~~~~~ 438 (484)
T COG4783 429 LARAEGYALA 438 (484)
T ss_pred HHHHHHHHhC
Confidence 6666655543
No 199
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.26 E-value=5.3e-05 Score=79.42 Aligned_cols=192 Identities=16% Similarity=0.118 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHH
Q 000742 28 ARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVE 107 (1313)
Q Consensus 28 a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~ 107 (1313)
+.-++.-|....+.|+|++|++.|+...... ...+..-.+...++.++++.++|++|+.+. ++-+.+.|..++..
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~---p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~-drFi~lyP~~~n~d- 108 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRH---PFSPYSEQAQLDLAYAYYKNGEYDLALAYI-DRFIRLYPTHPNAD- 108 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCcccHHHHHHHHHHHHhcccHHHHHHHH-HHHHHhCCCCCChh-
Confidence 4558899999999999999999999876544 233445788999999999999999999999 99999999887654
Q ss_pred HHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCc--chhhHHHHHHHHHHHHHHHHcCCHHHH
Q 000742 108 QQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSR--SSFLKEYIDAHNNIGMLQMELDNLEEA 185 (1313)
Q Consensus 108 ~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~--~~~~p~~~~~~~~la~~y~~~g~~~~A 185 (1313)
-+++..|.++.........++.-..+|+..|++.++-++...-.+.... ....-.++.--..+|..|.+.|.+..|
T Consensus 109 --Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA 186 (254)
T COG4105 109 --YAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAA 186 (254)
T ss_pred --HHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHH
Confidence 6788889888876555555666666777777766655433221110000 011223344556788999999999999
Q ss_pred HHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000742 186 KKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHI 232 (1313)
Q Consensus 186 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~ 232 (1313)
+..+++.++-++. ....-.++..+..+|..+|-.++|...-
T Consensus 187 ~nR~~~v~e~y~~------t~~~~eaL~~l~eaY~~lgl~~~a~~~~ 227 (254)
T COG4105 187 INRFEEVLENYPD------TSAVREALARLEEAYYALGLTDEAKKTA 227 (254)
T ss_pred HHHHHHHHhcccc------ccchHHHHHHHHHHHHHhCChHHHHHHH
Confidence 9999999998665 4556678889999999999999986543
No 200
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.26 E-value=3.3e-06 Score=77.10 Aligned_cols=98 Identities=32% Similarity=0.497 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhh
Q 000742 168 AHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQG 247 (1313)
Q Consensus 168 ~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~ 247 (1313)
++..+|..+...|++++|+.+++++++..+. ...++..+|.+|...|++++|++++++++...+ .
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~------~ 66 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPD---------NADAYYNLAAAYYKLGKYEEALEDYEKALELDP------D 66 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCc---------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------c
Confidence 5788999999999999999999999987443 236789999999999999999999999998765 3
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 000742 248 EAKGYINLGELHYRVQKYDEAILCYQKALNLAQ 280 (1313)
Q Consensus 248 ~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~ 280 (1313)
...++..+|.++...|++++|..+++++++..|
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 67 NAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 447889999999999999999999999887543
No 201
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.25 E-value=1.2e-05 Score=90.56 Aligned_cols=88 Identities=16% Similarity=0.001 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHH
Q 000742 210 RLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALA 289 (1313)
Q Consensus 210 ~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~ 289 (1313)
.+++..+..++..|++++|...++..+...| +....+...++++...++.++|.+.+++++...|...-.....
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P------~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~ 380 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIAAQP------DNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNL 380 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHH
Confidence 3444445555555555555555544333322 4444444445555555555555555555555544443333444
Q ss_pred HHHHHhHHHHHHHH
Q 000742 290 SQIDQNIETVKKAI 303 (1313)
Q Consensus 290 ~~~~~~lg~~~~a~ 303 (1313)
++++...|+..+++
T Consensus 381 a~all~~g~~~eai 394 (484)
T COG4783 381 AQALLKGGKPQEAI 394 (484)
T ss_pred HHHHHhcCChHHHH
Confidence 44444444444333
No 202
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.25 E-value=6.1e-06 Score=95.58 Aligned_cols=109 Identities=13% Similarity=0.157 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000742 113 TQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRG 192 (1313)
Q Consensus 113 ~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~a 192 (1313)
...|..++.. ++|++|+.+|.+|+++ .|..+.++.++|.+|..+|++++|+..+++|
T Consensus 6 ~~~a~~a~~~--------~~~~~Ai~~~~~Al~~---------------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~A 62 (356)
T PLN03088 6 EDKAKEAFVD--------DDFALAVDLYTQAIDL---------------DPNNAELYADRAQANIKLGNFTEAVADANKA 62 (356)
T ss_pred HHHHHHHHHc--------CCHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445555554 9999999999999987 3355789999999999999999999999999
Q ss_pred HhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHH
Q 000742 193 LEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELH 259 (1313)
Q Consensus 193 l~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~ 259 (1313)
+.+.+ ....+|+.+|.+|..+|+|++|+.+|++++++.+ ....+...++.+.
T Consensus 63 l~l~P---------~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P------~~~~~~~~l~~~~ 114 (356)
T PLN03088 63 IELDP---------SLAKAYLRKGTACMKLEEYQTAKAALEKGASLAP------GDSRFTKLIKECD 114 (356)
T ss_pred HHhCc---------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHH
Confidence 99843 3577899999999999999999999999999976 4444444444443
No 203
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.23 E-value=2.7e-07 Score=107.03 Aligned_cols=159 Identities=23% Similarity=0.204 Sum_probs=74.9
Q ss_pred CCcCEEEecCCCCCH-HHHHHHHHHHHhcc-----------------------cCccceEEEccCCCCCHHHHHHHHhcc
Q 000742 858 KTVALLDLSHNLLGN-GTMEKLQQFFISSC-----------------------QNYVDLTLDLHCNRFGPTTLFQICECP 913 (1313)
Q Consensus 858 ~~L~~L~Ls~n~l~~-~~~~~L~~~l~~~~-----------------------~~~~l~~L~Ls~n~l~~~~~~~l~~~l 913 (1313)
.+|++|.|.++.|+- .|+..|..-+.+-. ....|.+.+.++|++....- .+
T Consensus 109 ~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~-----SL 183 (1096)
T KOG1859|consen 109 RSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDE-----SL 183 (1096)
T ss_pred cceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHH-----HH
Confidence 678888888888764 34444433222111 11223344555554422211 11
Q ss_pred cCCCCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCCCCCChhhHHH
Q 000742 914 VLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITN 993 (1313)
Q Consensus 914 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~~ 993 (1313)
...+.|+.||||+|++++. ..|..|+.|++|||++|.+.. ++..=.....|..|.|++|.+ .
T Consensus 184 qll~ale~LnLshNk~~~v------~~Lr~l~~LkhLDlsyN~L~~-----vp~l~~~gc~L~~L~lrnN~l-------~ 245 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTKV------DNLRRLPKLKHLDLSYNCLRH-----VPQLSMVGCKLQLLNLRNNAL-------T 245 (1096)
T ss_pred HHHHHhhhhccchhhhhhh------HHHHhcccccccccccchhcc-----ccccchhhhhheeeeecccHH-------H
Confidence 1124466666666666543 345556666666666665542 111001112255566665552 1
Q ss_pred HHHhhccCCccceeecCCCCCChHH-HHHHHHHhhcCCccEEEccCCCCC
Q 000742 994 LLVKLDTLKSFSELNLNGLKLSKPV-VDRLCQLAKTSCLTHLMLGCTNLG 1042 (1313)
Q Consensus 994 ~~~~l~~~~~L~~L~Ls~n~l~~~~-~~~l~~l~~~~~L~~L~Ls~n~i~ 1042 (1313)
-+..+.++.+|+.|||+.|-|.+.. ...+..+ ..|+.|+|.+|.+.
T Consensus 246 tL~gie~LksL~~LDlsyNll~~hseL~pLwsL---s~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 246 TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSL---SSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhHHhhhhhhccchhHhhhhcchhhhHHHHH---HHHHHHhhcCCccc
Confidence 2233445556666666666554321 1111222 23556666666553
No 204
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=9.5e-06 Score=89.75 Aligned_cols=116 Identities=20% Similarity=0.232 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhcc------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000742 165 YIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEV------SEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIII 238 (1313)
Q Consensus 165 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~------~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~ 238 (1313)
.+.....-|..|++.|+|..|...|++|+.....-.. .........++.|++.+|.++++|.+|+.+..+++.+
T Consensus 207 ~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~ 286 (397)
T KOG0543|consen 207 AADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL 286 (397)
T ss_pred HHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 3556667799999999999999999999988653100 0112234667999999999999999999999999999
Q ss_pred HHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChh
Q 000742 239 CKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDED 286 (1313)
Q Consensus 239 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~ 286 (1313)
.+ ....+++..|.++..+|+|+.|+..|++|+++.|......
T Consensus 287 ~~------~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~ 328 (397)
T KOG0543|consen 287 DP------NNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAAR 328 (397)
T ss_pred CC------CchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 76 8899999999999999999999999999999999775533
No 205
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.21 E-value=2e-07 Score=111.14 Aligned_cols=267 Identities=21% Similarity=0.149 Sum_probs=144.8
Q ss_pred CCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCCCCCChhhHHHHHH
Q 000742 917 TRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLV 996 (1313)
Q Consensus 917 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 996 (1313)
+.++.++...+.++..... . ..+..++.+++..|.|.. +...+..+.+|+.|++.+|.+- .+..
T Consensus 49 ~~~~~~~~~~~~~~~~~~~-~----~~l~~l~~l~l~~n~i~~-----~~~~l~~~~~l~~l~l~~n~i~------~i~~ 112 (414)
T KOG0531|consen 49 SDLEEIDLIFNLDGSDEDL-V----ESLTSLKELNLRQNLIAK-----ILNHLSKLKSLEALDLYDNKIE------KIEN 112 (414)
T ss_pred chhhhhcchhccccchhhh-H----HHhHhHHhhccchhhhhh-----hhcccccccceeeeeccccchh------hccc
Confidence 5777788877766654221 1 345556667777776663 3333556778888888888741 1222
Q ss_pred hhccCCccceeecCCCCCChHHHHHHHHHhhcCCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCCChhHHH
Q 000742 997 KLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIH 1076 (1313)
Q Consensus 997 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 1076 (1313)
.+..+++|++|+|++|.|+... .+..++.|+.|++++|.|.+.. .+ ..+..|+.+++++|.++.....
T Consensus 113 ~l~~~~~L~~L~ls~N~I~~i~-----~l~~l~~L~~L~l~~N~i~~~~------~~-~~l~~L~~l~l~~n~i~~ie~~ 180 (414)
T KOG0531|consen 113 LLSSLVNLQVLDLSFNKITKLE-----GLSTLTLLKELNLSGNLISDIS------GL-ESLKSLKLLDLSYNRIVDIEND 180 (414)
T ss_pred chhhhhcchheecccccccccc-----chhhccchhhheeccCcchhcc------CC-ccchhhhcccCCcchhhhhhhh
Confidence 2455667777777777776521 1222233677777777665421 11 1134566666666666554211
Q ss_pred HHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhcCCCCceeEEEeecCCCCHHHHHHHHHHhhcCCC--ccEEEccCCC
Q 000742 1077 KFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDT--LEELNLADNA 1154 (1313)
Q Consensus 1077 ~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~--L~~L~Ls~N~ 1154 (1313)
. +..+..|+.+++++|.+.......... .+..+++..|.|+.. ..+..+.. |+.+++++|.
T Consensus 181 ---~-~~~~~~l~~l~l~~n~i~~i~~~~~~~-------~l~~~~l~~n~i~~~------~~l~~~~~~~L~~l~l~~n~ 243 (414)
T KOG0531|consen 181 ---E-LSELISLEELDLGGNSIREIEGLDLLK-------KLVLLSLLDNKISKL------EGLNELVMLHLRELYLSGNR 243 (414)
T ss_pred ---h-hhhccchHHHhccCCchhcccchHHHH-------HHHHhhcccccceec------cCcccchhHHHHHHhcccCc
Confidence 0 245566666666666654322111111 133335555555421 11222222 5666666666
Q ss_pred CChhhhhhhcccccccCCcccccccccccccccccccccccccCCCCcccccccCCccchhhhccccCCCCcccccccCC
Q 000742 1155 SKELTLQQNLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIRVESAASGFDNSCTSSCQKNS 1234 (1313)
Q Consensus 1155 i~~~~~~~~l~~l~~~~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ 1234 (1313)
+...+ ..+..+..+..|++.+|.+..... ......+..+.
T Consensus 244 i~~~~-----------------------------------~~~~~~~~l~~l~~~~n~~~~~~~-----~~~~~~~~~~~ 283 (414)
T KOG0531|consen 244 ISRSP-----------------------------------EGLENLKNLPVLDLSSNRISNLEG-----LERLPKLSELW 283 (414)
T ss_pred ccccc-----------------------------------ccccccccccccchhhcccccccc-----ccccchHHHhc
Confidence 55431 123455677777777777755422 12224566666
Q ss_pred ccchhhHHH---HHHH-HhccccCceecCCCCCCCHHH
Q 000742 1235 SFECQFVQE---LSSA-IGMAKPLQLLDLSNNGFSTQA 1268 (1313)
Q Consensus 1235 Ls~n~l~~~---l~~~-l~~~~~L~~LdLs~N~l~~~~ 1268 (1313)
+..|.+... .... ....+.++.+.+.+|.+....
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (414)
T KOG0531|consen 284 LNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKIS 321 (414)
T ss_pred cCcchhcchhhhhccccccccccccccccccCcccccc
Confidence 666665522 1111 556778888888888777643
No 206
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.18 E-value=0.0047 Score=75.16 Aligned_cols=250 Identities=11% Similarity=-0.026 Sum_probs=155.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHH
Q 000742 131 YSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSR 210 (1313)
Q Consensus 131 ~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 210 (1313)
.++.+|.....++....+...... .....+......|.+....|++++|+++.+.++...++ ......+.
T Consensus 429 ~r~~ea~~li~~l~~~l~~~~~~~------~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~----~~~~~r~~ 498 (894)
T COG2909 429 HRLAEAETLIARLEHFLKAPMHSR------QGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPE----AAYRSRIV 498 (894)
T ss_pred cChHHHHHHHHHHHHHhCcCcccc------hhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccc----ccchhhhh
Confidence 778888888877766544421111 12255677777888899999999999999999998776 34455677
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc----cChh
Q 000742 211 LHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSM----EDED 286 (1313)
Q Consensus 211 ~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~----~~~~ 286 (1313)
++..+|.+..-.|++++|..+.+++.++..+.+.......+....+.+...+|+.. ...-+++....... ....
T Consensus 499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~--~a~~~~~~~~~~~q~l~q~~~~ 576 (894)
T COG2909 499 ALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVA--RAEQEKAFNLIREQHLEQKPRH 576 (894)
T ss_pred hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHH--HHHHHHHHHHHHHHHhhhcccc
Confidence 88999999999999999999999999999988887888888888899999999332 22222222221110 0000
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742 287 ALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRK 366 (1313)
Q Consensus 287 ~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a 366 (1313)
.....++ +.+. ...-.++.+..-....
T Consensus 577 ~f~~~~r---~~ll--------------------------------------------------~~~~r~~~~~~ear~~ 603 (894)
T COG2909 577 EFLVRIR---AQLL--------------------------------------------------RAWLRLDLAEAEARLG 603 (894)
T ss_pred hhHHHHH---HHHH--------------------------------------------------HHHHHHhhhhHHhhhc
Confidence 0000000 0000 0000011111212222
Q ss_pred HHHHHHhCCchhhH-HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCc-hhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000742 367 KRIASELCDKGKLS-DSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNL-EGQALAKVNMGNVLDSNGDWAGALDAFQ 444 (1313)
Q Consensus 367 ~~i~~~~~~~~~~a-~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~-~~~~~~~~~lg~~y~~~g~~~~A~~~~~ 444 (1313)
..+.......+... .++..++.+++..|++++|.....+...+......+ ...+.++.-.......+|++++|.....
T Consensus 604 ~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~ 683 (894)
T COG2909 604 IEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLL 683 (894)
T ss_pred chhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHH
Confidence 22222222222222 233579999999999999999999888877654322 2223333334444456789988888777
Q ss_pred H
Q 000742 445 E 445 (1313)
Q Consensus 445 k 445 (1313)
+
T Consensus 684 ~ 684 (894)
T COG2909 684 K 684 (894)
T ss_pred h
Confidence 6
No 207
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.18 E-value=5.7e-05 Score=75.52 Aligned_cols=124 Identities=14% Similarity=0.022 Sum_probs=96.3
Q ss_pred HHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 000742 39 KNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRT 118 (1313)
Q Consensus 39 ~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~ 118 (1313)
...++...+...+++.+.-.+ .......+...+|.+++..|++++|...| ++++... ++......+...+|.+
T Consensus 22 ~~~~~~~~~~~~~~~l~~~~~---~s~ya~~A~l~lA~~~~~~g~~~~A~~~l-~~~~~~~---~d~~l~~~a~l~LA~~ 94 (145)
T PF09976_consen 22 LQAGDPAKAEAAAEQLAKDYP---SSPYAALAALQLAKAAYEQGDYDEAKAAL-EKALANA---PDPELKPLARLRLARI 94 (145)
T ss_pred HHCCCHHHHHHHHHHHHHHCC---CChHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHhhC---CCHHHHHHHHHHHHHH
Confidence 367888888777776665542 22234677888999999999999999999 9988854 3444456778899999
Q ss_pred HHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000742 119 YYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGL 193 (1313)
Q Consensus 119 y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al 193 (1313)
+... |++++|+..++.. .+ .+..+.++..+|.+|...|++++|+..|++|+
T Consensus 95 ~~~~--------~~~d~Al~~L~~~-------~~---------~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 95 LLQQ--------GQYDEALATLQQI-------PD---------EAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHc--------CCHHHHHHHHHhc-------cC---------cchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 9987 9999999988551 11 12346688899999999999999999999985
No 208
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.17 E-value=3.4e-07 Score=106.25 Aligned_cols=207 Identities=24% Similarity=0.192 Sum_probs=122.6
Q ss_pred CCCcCEEEecCCCCCh-hHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHH-HhcC------CCccEEEeCCCCCCC
Q 000742 916 FTRLGVLNLSGNRLTD-ACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADA-LGAE------STLAQLCIGYNSPVT 987 (1313)
Q Consensus 916 ~~~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~-l~~~------~~L~~L~Ls~n~l~~ 987 (1313)
+..|++|.|.++.|+. .|+..|-. .|++|-- .|.++ .+.++..+ .... ..|.+.+.++|.+
T Consensus 108 F~sLr~LElrg~~L~~~~GL~~lr~------qLe~LIC-~~Sl~--Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L-- 176 (1096)
T KOG1859|consen 108 FRSLRVLELRGCDLSTAKGLQELRH------QLEKLIC-HNSLD--ALRHVFASCGGDISNSPVWNKLATASFSYNRL-- 176 (1096)
T ss_pred ccceeeEEecCcchhhhhhhHHHHH------hhhhhhh-hccHH--HHHHHHHHhccccccchhhhhHhhhhcchhhH--
Confidence 4789999999888864 33333322 2444422 12222 11111111 1111 2367778888874
Q ss_pred hhhHHHHHHhhccCCccceeecCCCCCChHHHHHHHHHhhcCCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccC
Q 000742 988 GNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSY 1067 (1313)
Q Consensus 988 ~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~ 1067 (1313)
..+-.++.-++.|+.|||++|+++.. . .+..++.|++|||+.|.+... + .+....++|+.|.|++
T Consensus 177 ----~~mD~SLqll~ale~LnLshNk~~~v--~---~Lr~l~~LkhLDlsyN~L~~v-----p-~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 177 ----VLMDESLQLLPALESLNLSHNKFTKV--D---NLRRLPKLKHLDLSYNCLRHV-----P-QLSMVGCKLQLLNLRN 241 (1096)
T ss_pred ----HhHHHHHHHHHHhhhhccchhhhhhh--H---HHHhcccccccccccchhccc-----c-ccchhhhhheeeeecc
Confidence 33444555666888999999988663 2 334456799999999987542 1 1111125699999999
Q ss_pred CCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhcCCCCceeEEEeecCCCCHH--HHHHHHHHhhcCCCc
Q 000742 1068 CGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLA--GVLQLIKALSENDTL 1145 (1313)
Q Consensus 1068 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~--g~~~l~~~l~~~~~L 1145 (1313)
|-++.. ..+.++.+|..|||++|-|.+..--.....+. .|+.|+|.||.+--. --.+.++.+..+.-=
T Consensus 242 N~l~tL------~gie~LksL~~LDlsyNll~~hseL~pLwsLs----~L~~L~LeGNPl~c~p~hRaataqYl~~~~a~ 311 (1096)
T KOG1859|consen 242 NALTTL------RGIENLKSLYGLDLSYNLLSEHSELEPLWSLS----SLIVLWLEGNPLCCAPWHRAATAQYLHKNSAP 311 (1096)
T ss_pred cHHHhh------hhHHhhhhhhccchhHhhhhcchhhhHHHHHH----HHHHHhhcCCccccCHHHHHHHHhHhccccCC
Confidence 988765 34567789999999999887544333223333 388999999987421 111233444444444
Q ss_pred cEEEccCCCCChh
Q 000742 1146 EELNLADNASKEL 1158 (1313)
Q Consensus 1146 ~~L~Ls~N~i~~~ 1158 (1313)
..+-|.+-.|+..
T Consensus 312 ~~f~LDgk~l~~~ 324 (1096)
T KOG1859|consen 312 VKFKLDGKALGGR 324 (1096)
T ss_pred cceEecceeccch
Confidence 4566666666554
No 209
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.16 E-value=1.4e-05 Score=87.24 Aligned_cols=109 Identities=9% Similarity=0.050 Sum_probs=93.6
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhch
Q 000742 166 IDAHNNIGMLQ-MELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEH 244 (1313)
Q Consensus 166 ~~~~~~la~~y-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~ 244 (1313)
....+..|..+ ...|+|++|+..|++.++.++. ......+++.+|.+|+..|++++|+.+|++++..++ +
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~------s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP---~ 212 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPD------STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP---K 212 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---C
Confidence 35566666655 5679999999999999999766 445567899999999999999999999999998877 3
Q ss_pred hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcc
Q 000742 245 CQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSME 283 (1313)
Q Consensus 245 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~ 283 (1313)
.+....+++.+|.+|..+|++++|..+|+++++..|...
T Consensus 213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 456788999999999999999999999999999887643
No 210
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.16 E-value=8.5e-08 Score=108.56 Aligned_cols=178 Identities=16% Similarity=0.157 Sum_probs=127.7
Q ss_pred ccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHh
Q 000742 1031 LTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLL 1110 (1313)
Q Consensus 1031 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~~l 1110 (1313)
-...+|+.|.+....... +. + -.|+.|.|..|.|-. ++.++..+..|+.|||+.|.++ ..+..+|.+
T Consensus 77 t~~aDlsrNR~~elp~~~-~~-f----~~Le~liLy~n~~r~-----ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l- 143 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEA-CA-F----VSLESLILYHNCIRT-----IPEAICNLEALTFLDLSSNQLS-HLPDGLCDL- 143 (722)
T ss_pred hhhhhccccccccCchHH-HH-H----HHHHHHHHHhcccee-----cchhhhhhhHHHHhhhccchhh-cCChhhhcC-
Confidence 456677888775432211 11 1 246667777776544 3556777788888888888876 334455443
Q ss_pred cCCCCceeEEEeecCCCCHHHHHHHHHHhhcCCCccEEEccCCCCChhhhhhhcccccccCCcccccccccccccccccc
Q 000742 1111 MNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASKELTLQQNLSSVNSENLQPALKTSDCVSKEVDTDQ 1190 (1313)
Q Consensus 1111 ~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~~l~~l~~~~l~~n~~~~~~~~~~~~~~~ 1190 (1313)
.|+.|.+++|+++ .++..+....+|..||.+.|.|....
T Consensus 144 -----pLkvli~sNNkl~-----~lp~~ig~~~tl~~ld~s~nei~slp------------------------------- 182 (722)
T KOG0532|consen 144 -----PLKVLIVSNNKLT-----SLPEEIGLLPTLAHLDVSKNEIQSLP------------------------------- 182 (722)
T ss_pred -----cceeEEEecCccc-----cCCcccccchhHHHhhhhhhhhhhch-------------------------------
Confidence 4888888888887 36667777778888888888776542
Q ss_pred cccccccCCCCcccccccCCccchhhhccccCCCCcccccccCCccchhhHHHHHHHHhccccCceecCCCCCCCHHHHH
Q 000742 1191 HGLFAMNTDCNDLEVADSEDDKIRVESAASGFDNSCTSSCQKNSSFECQFVQELSSAIGMAKPLQLLDLSNNGFSTQAVK 1270 (1313)
Q Consensus 1191 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~l~~~l~~~~~L~~LdLs~N~l~~~~~~ 1270 (1313)
..+.++.+|+.|.+..|++..+++ ..|...|..||+|.|+++. ||-.|..++.|++|-|.+|.+....++
T Consensus 183 ----sql~~l~slr~l~vrRn~l~~lp~-----El~~LpLi~lDfScNkis~-iPv~fr~m~~Lq~l~LenNPLqSPPAq 252 (722)
T KOG0532|consen 183 ----SQLGYLTSLRDLNVRRNHLEDLPE-----ELCSLPLIRLDFSCNKISY-LPVDFRKMRHLQVLQLENNPLQSPPAQ 252 (722)
T ss_pred ----HHhhhHHHHHHHHHhhhhhhhCCH-----HHhCCceeeeecccCceee-cchhhhhhhhheeeeeccCCCCCChHH
Confidence 234667788899999999977644 3444688999999999764 888999999999999999999987655
Q ss_pred HH
Q 000742 1271 TL 1272 (1313)
Q Consensus 1271 ~l 1272 (1313)
..
T Consensus 253 IC 254 (722)
T KOG0532|consen 253 IC 254 (722)
T ss_pred HH
Confidence 43
No 211
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.15 E-value=1.4e-05 Score=98.50 Aligned_cols=37 Identities=22% Similarity=0.371 Sum_probs=20.8
Q ss_pred cCCCCcEEEeecC-CCCHHHHHHHHHHHhcCCCccEEEeCC
Q 000742 943 NCKVLYSLNIENC-SITSRTIQKVADALGAESTLAQLCIGY 982 (1313)
Q Consensus 943 ~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~ 982 (1313)
.++.|+.|.+..| .++..+ +......+++|+.|++++
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDS---LDALALKCPNLEELDLSG 223 (482)
T ss_pred hCchhhHhhhcccccCChhh---HHHHHhhCchhheecccC
Confidence 3566666666666 444333 233345566666666665
No 212
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.15 E-value=6.3e-05 Score=71.08 Aligned_cols=102 Identities=20% Similarity=0.140 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhh
Q 000742 167 DAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQ 246 (1313)
Q Consensus 167 ~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~ 246 (1313)
.+.+.+|.++...|+.++|+.+|+++++.- -..+....++..+|..|..+|++++|+..+++++...+ +.+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g------L~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p---~~~ 72 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAG------LSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFP---DDE 72 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcC------CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---Ccc
Confidence 478899999999999999999999999862 23556778999999999999999999999999987654 222
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 000742 247 GEAKGYINLGELHYRVQKYDEAILCYQKALN 277 (1313)
Q Consensus 247 ~~~~~~~~la~~~~~~g~~~~A~~~~~kal~ 277 (1313)
........++.++...|++++|+..+-.++.
T Consensus 73 ~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 73 LNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3556667788899999999999999988775
No 213
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.14 E-value=1.8e-05 Score=77.87 Aligned_cols=109 Identities=25% Similarity=0.317 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchh
Q 000742 166 IDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHC 245 (1313)
Q Consensus 166 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~ 245 (1313)
+..+-.-|.-++..|+|++|..-|..|+++++.. ....++..|.+.|.+..+++.++.|+....+|+++.+
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~----~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p----- 165 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPST----STEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP----- 165 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccc----cHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc-----
Confidence 3344455777888999999999999999999874 4466788999999999999999999999999999977
Q ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccC
Q 000742 246 QGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMED 284 (1313)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~ 284 (1313)
.+..++...|.+|.++..|++|++-|++.++..|....
T Consensus 166 -ty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~e 203 (271)
T KOG4234|consen 166 -TYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRRE 203 (271)
T ss_pred -hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHH
Confidence 77888889999999999999999999999999886543
No 214
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.13 E-value=1.6e-05 Score=76.60 Aligned_cols=104 Identities=17% Similarity=0.128 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHH
Q 000742 29 RWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQ 108 (1313)
Q Consensus 29 ~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~ 108 (1313)
..++.+|..+...|++++|++.|.+++...+. ......+++.+|.++...|++++|+.++ ++++...|.....
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~-~~~~~~~p~~~~~--- 75 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPK---STYAPNAHYWLGEAYYAQGKYADAAKAF-LAVVKKYPKSPKA--- 75 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---ccccHHHHHHHHHHHHhhccHHHHHHHH-HHHHHHCCCCCcc---
Confidence 45889999999999999999999999876532 2334678999999999999999999999 9999887654322
Q ss_pred HHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHH
Q 000742 109 QRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLA 147 (1313)
Q Consensus 109 a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~ 147 (1313)
..++..+|.+|..+ +++++|+.+++++++..
T Consensus 76 ~~~~~~~~~~~~~~--------~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 76 PDALLKLGMSLQEL--------GDKEKAKATLQQVIKRY 106 (119)
T ss_pred cHHHHHHHHHHHHh--------CChHHHHHHHHHHHHHC
Confidence 35689999999988 99999999999998873
No 215
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.12 E-value=1.7e-06 Score=103.09 Aligned_cols=176 Identities=23% Similarity=0.237 Sum_probs=100.2
Q ss_pred CCCcEEEeecCCCCHHHHHHHHHHHhcCC-CccEEEeCCCCCCChhhHHHHHHhhccCCccceeecCCCCCChHHHHHHH
Q 000742 945 KVLYSLNIENCSITSRTIQKVADALGAES-TLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLC 1023 (1313)
Q Consensus 945 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 1023 (1313)
+.++.|++.+|.++. +........ +|+.|++++|.+ ..++..+..+++|+.|++++|++++..... +
T Consensus 116 ~~l~~L~l~~n~i~~-----i~~~~~~~~~nL~~L~l~~N~i------~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~-~ 183 (394)
T COG4886 116 TNLTSLDLDNNNITD-----IPPLIGLLKSNLKELDLSDNKI------ESLPSPLRNLPNLKNLDLSFNDLSDLPKLL-S 183 (394)
T ss_pred cceeEEecCCccccc-----Cccccccchhhcccccccccch------hhhhhhhhccccccccccCCchhhhhhhhh-h
Confidence 445555565555552 222223332 566666666652 223234556666666666666665532221 0
Q ss_pred HHhhcCCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHH
Q 000742 1024 QLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGA 1103 (1313)
Q Consensus 1024 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~ 1103 (1313)
..+.|+.|++++|.+.+... .+ .....|++|.+++|.+... ...+...+.+..|.+++|++.+. +
T Consensus 184 ---~~~~L~~L~ls~N~i~~l~~-----~~-~~~~~L~~l~~~~N~~~~~-----~~~~~~~~~l~~l~l~~n~~~~~-~ 248 (394)
T COG4886 184 ---NLSNLNNLDLSGNKISDLPP-----EI-ELLSALEELDLSNNSIIEL-----LSSLSNLKNLSGLELSNNKLEDL-P 248 (394)
T ss_pred ---hhhhhhheeccCCccccCch-----hh-hhhhhhhhhhhcCCcceec-----chhhhhcccccccccCCceeeec-c
Confidence 23457777777777765321 11 1113478888888852221 23455667777777888877642 1
Q ss_pred HHHHHHhcCCCCceeEEEeecCCCCHHHHHHHHHHhhcCCCccEEEccCCCCChh
Q 000742 1104 NALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASKEL 1158 (1313)
Q Consensus 1104 ~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~N~i~~~ 1158 (1313)
..+.. ...++.|++++|.|+.. .. +....+|+.|++++|.+...
T Consensus 249 ~~~~~-----l~~l~~L~~s~n~i~~i-----~~-~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 249 ESIGN-----LSNLETLDLSNNQISSI-----SS-LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred chhcc-----ccccceecccccccccc-----cc-ccccCccCEEeccCcccccc
Confidence 12222 12488888888888743 22 67778888888888887655
No 216
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.12 E-value=0.00063 Score=85.18 Aligned_cols=185 Identities=12% Similarity=0.105 Sum_probs=146.0
Q ss_pred CCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHH--HHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHH
Q 000742 65 KHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELA--KDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKS 142 (1313)
Q Consensus 65 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~--~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~ 142 (1313)
+.-+-.|...-..+...++.++|.+.+ ++||.-. +..........||.++-..| |.-+.-.+.|++
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~ia-erAL~tIN~REeeEKLNiWiA~lNlEn~y-----------G~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIA-ERALKTINFREEEEKLNIWIAYLNLENAY-----------GTEESLKKVFER 1522 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHH-HHHhhhCCcchhHHHHHHHHHHHhHHHhh-----------CcHHHHHHHHHH
Confidence 333556666666677889999999999 9999754 12222333445666666666 666677888888
Q ss_pred HHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHc
Q 000742 143 AMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMEL 222 (1313)
Q Consensus 143 Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~ 222 (1313)
|-+++.. ..+|..|..+|...+++++|.++|+..++-+.+ ...+|..+|...+..
T Consensus 1523 Acqycd~----------------~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q---------~~~vW~~y~~fLl~~ 1577 (1710)
T KOG1070|consen 1523 ACQYCDA----------------YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ---------TRKVWIMYADFLLRQ 1577 (1710)
T ss_pred HHHhcch----------------HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc---------hhhHHHHHHHHHhcc
Confidence 8887543 368899999999999999999999999988654 467899999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHH
Q 000742 223 RMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALAS 290 (1313)
Q Consensus 223 g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~ 290 (1313)
.+-+.|...+++|++..|+ ..........|++-++.|+.+.+...|+..+.-+|+-.+.|....
T Consensus 1578 ne~~aa~~lL~rAL~~lPk----~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYi 1641 (1710)
T KOG1070|consen 1578 NEAEAARELLKRALKSLPK----QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYI 1641 (1710)
T ss_pred cHHHHHHHHHHHHHhhcch----hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHH
Confidence 9999999999999999885 245566777899999999999999999999999988777665443
No 217
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.11 E-value=0.00047 Score=77.06 Aligned_cols=161 Identities=12% Similarity=0.121 Sum_probs=109.3
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhc----CHHHHHHH
Q 000742 36 DILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDAS----DLVEQQRA 111 (1313)
Q Consensus 36 ~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~----~~~~~a~a 111 (1313)
..|.+..+...+....+-+..+. ..-+.+....+..++..|+|.+|.+.+ ... .+....+ ........
T Consensus 214 r~llq~~~Lk~~krevK~vmn~a------~~s~~~l~LKsq~eY~~gn~~kA~KlL-~~s-ni~~~~g~~~T~q~~~cif 285 (696)
T KOG2471|consen 214 RFLLQTRNLKLAKREVKHVMNIA------QDSSMALLLKSQLEYAHGNHPKAMKLL-LVS-NIHKEAGGTITPQLSSCIF 285 (696)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhc------CCCcHHHHHHHHHHHHhcchHHHHHHH-Hhc-ccccccCccccchhhhhee
Confidence 33445555555555555444443 233677888899999999999999887 322 2222221 11123456
Q ss_pred HHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHH-HHHHhccC--CCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 000742 112 CTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMK-LAQTLKEN--PATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKF 188 (1313)
Q Consensus 112 ~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~-l~~~~~~~--~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~ 188 (1313)
++++|-+++.+ +.|.-+..+|.+|++ .+.++... +.....-....-.++.++.|..|...|+.-.|.+.
T Consensus 286 ~NNlGcIh~~~--------~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqC 357 (696)
T KOG2471|consen 286 NNNLGCIHYQL--------GCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQC 357 (696)
T ss_pred ecCcceEeeeh--------hhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHH
Confidence 78999999999 999999999999996 55554432 11111111123457899999999999999999999
Q ss_pred HHHHHhHhhhhccCCCchHHHHHHHHHHHHHHH
Q 000742 189 LIRGLEICNEEEVSEDDDGRSRLHHNLGNVYME 221 (1313)
Q Consensus 189 ~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~ 221 (1313)
|.++...+.. ..+.|..+|.+...
T Consensus 358 f~~av~vfh~---------nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 358 FQKAVHVFHR---------NPRLWLRLAECCIM 381 (696)
T ss_pred HHHHHHHHhc---------CcHHHHHHHHHHHH
Confidence 9999999766 35677888777654
No 218
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.10 E-value=0.00054 Score=85.79 Aligned_cols=250 Identities=14% Similarity=0.055 Sum_probs=173.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000742 163 KEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKI 242 (1313)
Q Consensus 163 p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~ 242 (1313)
|+-+..|...-..+.+.++.++|.+.+++|+....--+ .+.......+|.||-..| |.-+.-.+.|++|.+++.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~RE-eeEKLNiWiA~lNlEn~y---G~eesl~kVFeRAcqycd-- 1528 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFRE-EEEKLNIWIAYLNLENAY---GTEESLKKVFERACQYCD-- 1528 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcch-hHHHHHHHHHHHhHHHhh---CcHHHHHHHHHHHHHhcc--
Confidence 44566788888888899999999999999998752100 022334555666665555 566777888888888764
Q ss_pred chhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742 243 EHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRN 322 (1313)
Q Consensus 243 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~ 322 (1313)
...+|..|..+|...+++++|.++|+..++-+.+....|...+..+....+...|.
T Consensus 1529 -----~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~------------------- 1584 (1710)
T KOG1070|consen 1529 -----AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAAR------------------- 1584 (1710)
T ss_pred -----hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHH-------------------
Confidence 45688899999999999999999999999888754444444443333333322232
Q ss_pred HHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHH
Q 000742 323 MIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKW 402 (1313)
Q Consensus 323 l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~ 402 (1313)
..+++|+....+ ..-.......|.+-++.|+.+.+...
T Consensus 1585 --------------------------------------~lL~rAL~~lPk----~eHv~~IskfAqLEFk~GDaeRGRtl 1622 (1710)
T KOG1070|consen 1585 --------------------------------------ELLKRALKSLPK----QEHVEFISKFAQLEFKYGDAERGRTL 1622 (1710)
T ss_pred --------------------------------------HHHHHHHhhcch----hhhHHHHHHHHHHHhhcCCchhhHHH
Confidence 333333333222 11224555678888999999999999
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhHHHHHHhhcCHHHHHH
Q 000742 403 YTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMIRFDNIEEARR 482 (1313)
Q Consensus 403 ~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~~~~~~al~~L~~~~~~~~~~~~~a~~ 482 (1313)
|+-.+.-+| .....|.-+...-.+.|+.+.+...|++++++ .-+..+..-++.+-.-|....++.+.+..
T Consensus 1623 fEgll~ayP------KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l----~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1623 FEGLLSAYP------KRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL----KLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred HHHHHhhCc------cchhHHHHHHHHHHccCCHHHHHHHHHHHHhc----CCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 998886654 44456777777778889999999999999886 34444555666666667777788888877
Q ss_pred HHHHHHHHHhhh
Q 000742 483 LQHEIDKLKESK 494 (1313)
Q Consensus 483 ~~e~~~~l~~s~ 494 (1313)
......+|-++.
T Consensus 1693 VKarA~EYv~s~ 1704 (1710)
T KOG1070|consen 1693 VKARAKEYVESI 1704 (1710)
T ss_pred HHHHHHHHHHHh
Confidence 777777776655
No 219
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.09 E-value=0.011 Score=72.14 Aligned_cols=236 Identities=12% Similarity=-0.018 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchh
Q 000742 166 IDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHC 245 (1313)
Q Consensus 166 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~ 245 (1313)
+......|.......++.+|.....++....+...........+...-..|.+....|++++|+++.+.++...+....
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~- 493 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY- 493 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc-
Confidence 4455666777788899999999999888776652112233445666677788999999999999999999998875433
Q ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742 246 QGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMII 325 (1313)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~ 325 (1313)
.....++..+|.++.-.|++++|..+...+.++.......+...- +......+.++.+..
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~-~~~~~s~il~~qGq~------------------- 553 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALW-SLLQQSEILEAQGQV------------------- 553 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHH-HHHHHHHHHHHhhHH-------------------
Confidence 345678889999999999999999999999999987765433221 111111222211100
Q ss_pred hhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHH
Q 000742 326 AKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKK-RIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYT 404 (1313)
Q Consensus 326 ~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~-~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~ 404 (1313)
.|......+.... ....+.........++..+.++|.+ ++.|..-..
T Consensus 554 -----------------------------~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear 601 (894)
T COG2909 554 -----------------------------ARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEAR 601 (894)
T ss_pred -----------------------------HHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhh
Confidence 0000000000000 0001111111112333333334433 777777777
Q ss_pred HHHHHHHHhCCchhHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q 000742 405 KSWEMYKSIGNLEGQA-LAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEAN 454 (1313)
Q Consensus 405 kal~l~~~~~~~~~~~-~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~ 454 (1313)
+.+++-......+... .+++.++.+++..|++++|.....+...+....+
T Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~ 652 (894)
T COG2909 602 LGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ 652 (894)
T ss_pred hcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC
Confidence 7776655444333333 3346999999999999999999999988876654
No 220
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.09 E-value=2.3e-07 Score=110.55 Aligned_cols=152 Identities=22% Similarity=0.210 Sum_probs=89.3
Q ss_pred CCcCEEEecCCCCCHHHHHHHHHHHHhcccCccceEEEccCCCCCHHHHHHHHhcccCCCCcCEEEecCCCCChhHHHHH
Q 000742 858 KTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYL 937 (1313)
Q Consensus 858 ~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~~~~l~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 937 (1313)
+.++.++...+.++..... ... ...+..+++..|.|.. +...+..+.+|+.|+|.+|.|...
T Consensus 49 ~~~~~~~~~~~~~~~~~~~-~~~-------l~~l~~l~l~~n~i~~-----~~~~l~~~~~l~~l~l~~n~i~~i----- 110 (414)
T KOG0531|consen 49 SDLEEIDLIFNLDGSDEDL-VES-------LTSLKELNLRQNLIAK-----ILNHLSKLKSLEALDLYDNKIEKI----- 110 (414)
T ss_pred chhhhhcchhccccchhhh-HHH-------hHhHHhhccchhhhhh-----hhcccccccceeeeeccccchhhc-----
Confidence 5677788887775543333 111 1224556677776655 222233457888888888888753
Q ss_pred HHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCCCCCChhhHHHHHHhhccCCccceeecCCCCCChH
Q 000742 938 STILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKP 1017 (1313)
Q Consensus 938 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~ 1017 (1313)
...+..+++|++|+|++|.|+... .+..++.|+.|++++|.+- -...+..++.|+.+++++|.+...
T Consensus 111 ~~~l~~~~~L~~L~ls~N~I~~i~------~l~~l~~L~~L~l~~N~i~-------~~~~~~~l~~L~~l~l~~n~i~~i 177 (414)
T KOG0531|consen 111 ENLLSSLVNLQVLDLSFNKITKLE------GLSTLTLLKELNLSGNLIS-------DISGLESLKSLKLLDLSYNRIVDI 177 (414)
T ss_pred ccchhhhhcchheecccccccccc------chhhccchhhheeccCcch-------hccCCccchhhhcccCCcchhhhh
Confidence 232666778888888888887421 2344566888888888741 122334466777777777776554
Q ss_pred HHHHHHHHhhcCCccEEEccCCCCCC
Q 000742 1018 VVDRLCQLAKTSCLTHLMLGCTNLGS 1043 (1313)
Q Consensus 1018 ~~~~l~~l~~~~~L~~L~Ls~n~i~~ 1043 (1313)
... . +....+|+.+.+++|.|..
T Consensus 178 e~~--~-~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 178 END--E-LSELISLEELDLGGNSIRE 200 (414)
T ss_pred hhh--h-hhhccchHHHhccCCchhc
Confidence 331 0 1223446666666666543
No 221
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.08 E-value=0.00027 Score=70.86 Aligned_cols=206 Identities=16% Similarity=0.068 Sum_probs=135.1
Q ss_pred CcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHh
Q 000742 23 NRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDA 102 (1313)
Q Consensus 23 ~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~ 102 (1313)
.+.+.|..++..|..|-..|-+.-|.-.|.+++.+.|+ .+.+++.+|..+...|+|+.|.+.| ...+++.|..
T Consensus 60 ~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~------m~~vfNyLG~Yl~~a~~fdaa~eaF-ds~~ELDp~y 132 (297)
T COG4785 60 TDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPD------MPEVFNYLGIYLTQAGNFDAAYEAF-DSVLELDPTY 132 (297)
T ss_pred ChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCC------cHHHHHHHHHHHHhcccchHHHHHh-hhHhccCCcc
Confidence 45667888999999999999999999999999998844 4899999999999999999999999 9999998877
Q ss_pred cCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCH
Q 000742 103 SDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNL 182 (1313)
Q Consensus 103 ~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~ 182 (1313)
+. +..+.|..++.- |+++-|.+.+.+-.+- -... |. -..|..+- ...-+.
T Consensus 133 ~Y------a~lNRgi~~YY~--------gR~~LAq~d~~~fYQ~---D~~D---------Pf-R~LWLYl~---E~k~dP 182 (297)
T COG4785 133 NY------AHLNRGIALYYG--------GRYKLAQDDLLAFYQD---DPND---------PF-RSLWLYLN---EQKLDP 182 (297)
T ss_pred hH------HHhccceeeeec--------CchHhhHHHHHHHHhc---CCCC---------hH-HHHHHHHH---HhhCCH
Confidence 53 445666665544 8888888777654432 1111 11 11222221 223456
Q ss_pred HHHHHHH-HHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHH
Q 000742 183 EEAKKFL-IRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKI-EHCQGEAKGYINLGELHY 260 (1313)
Q Consensus 183 ~~A~~~~-~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~-~~~~~~~~~~~~la~~~~ 260 (1313)
.+|...+ +++....++ ......+-+.+|.+-. ...++++.+..... ........+|+.+|..|.
T Consensus 183 ~~A~tnL~qR~~~~d~e------~WG~~iV~~yLgkiS~--------e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l 248 (297)
T COG4785 183 KQAKTNLKQRAEKSDKE------QWGWNIVEFYLGKISE--------ETLMERLKADATDNTSLAEHLTETYFYLGKYYL 248 (297)
T ss_pred HHHHHHHHHHHHhccHh------hhhHHHHHHHHhhccH--------HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHh
Confidence 6666544 344333211 2222222333332211 12233333333211 112356778999999999
Q ss_pred HhcCHHHHHHHHHHHHHHH
Q 000742 261 RVQKYDEAILCYQKALNLA 279 (1313)
Q Consensus 261 ~~g~~~~A~~~~~kal~~~ 279 (1313)
..|+.++|...|+-|+...
T Consensus 249 ~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 249 SLGDLDEATALFKLAVANN 267 (297)
T ss_pred ccccHHHHHHHHHHHHHHh
Confidence 9999999999999887643
No 222
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.07 E-value=0.00068 Score=71.27 Aligned_cols=185 Identities=15% Similarity=0.114 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchh
Q 000742 166 IDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHC 245 (1313)
Q Consensus 166 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~ 245 (1313)
+..+++-|....+.|+|++|+.+|+......+- .+..-.+...++.++++.+++++|+.++++-+...|. +
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~------s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~---~ 104 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPF------SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPT---H 104 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC---C
Confidence 567777888888899999999999998866443 5556788999999999999999999999999998874 4
Q ss_pred hhHHHHHHHHHHHHHHh-----cCHH---HHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 000742 246 QGEAKGYINLGELHYRV-----QKYD---EAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLK 317 (1313)
Q Consensus 246 ~~~~~~~~~la~~~~~~-----g~~~---~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~ 317 (1313)
++...+++..|..++.. .+.. +|+..+++.++-.|...- ... |...+..+
T Consensus 105 ~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Y---a~d-----------A~~~i~~~-------- 162 (254)
T COG4105 105 PNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRY---APD-----------AKARIVKL-------- 162 (254)
T ss_pred CChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcc---hhh-----------HHHHHHHH--------
Confidence 56677788888876543 2333 344444444444433221 110 00000000
Q ss_pred HHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHH
Q 000742 318 KLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFN 397 (1313)
Q Consensus 318 ~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~ 397 (1313)
. ...+.--..+|..|.+.|.+.
T Consensus 163 ----------------------------------------------~------------d~LA~~Em~IaryY~kr~~~~ 184 (254)
T COG4105 163 ----------------------------------------------N------------DALAGHEMAIARYYLKRGAYV 184 (254)
T ss_pred ----------------------------------------------H------------HHHHHHHHHHHHHHHHhcChH
Confidence 0 001122344799999999999
Q ss_pred HHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 000742 398 KAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDA 442 (1313)
Q Consensus 398 ~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~ 442 (1313)
.|+..++..++-.+ +.+....++..+..+|..+|-.++|...
T Consensus 185 AA~nR~~~v~e~y~---~t~~~~eaL~~l~eaY~~lgl~~~a~~~ 226 (254)
T COG4105 185 AAINRFEEVLENYP---DTSAVREALARLEEAYYALGLTDEAKKT 226 (254)
T ss_pred HHHHHHHHHHhccc---cccchHHHHHHHHHHHHHhCChHHHHHH
Confidence 99999999887654 3445667888999999999999888754
No 223
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.05 E-value=0.00068 Score=73.82 Aligned_cols=229 Identities=24% Similarity=0.295 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHH
Q 000742 8 MSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDA 87 (1313)
Q Consensus 8 ~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A 87 (1313)
+..+...+..+................+..+...+++..+...+..+... .........+...|..+...+++.+|
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (291)
T COG0457 39 LAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALEL----ELLPNLAEALLNLGLLLEALGKYEEA 114 (291)
T ss_pred HHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhh----hhccchHHHHHHHHHHHHHHhhHHHH
Confidence 33444444444444333212233556666666777777777766666553 01122355666666677677777777
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-HHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHH
Q 000742 88 LIYQVKKHLELAKDASDLVEQQRACTQLGR-TYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYI 166 (1313)
Q Consensus 88 ~~~~~~kal~l~~~~~~~~~~a~a~~~lg~-~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~ 166 (1313)
+..+ .+++...+.... .....+. ++... ++++.|...|.+++..... . ....
T Consensus 115 ~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~--------~~~~~a~~~~~~~~~~~~~---~---------~~~~ 167 (291)
T COG0457 115 LELL-EKALALDPDPDL------AEALLALGALYEL--------GDYEEALELYEKALELDPE---L---------NELA 167 (291)
T ss_pred HHHH-HHHHcCCCCcch------HHHHHHHHHHHHc--------CCHHHHHHHHHHHHhcCCC---c---------cchH
Confidence 7666 666654443311 1122222 45544 6677777777776432110 0 0234
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhh
Q 000742 167 DAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQ 246 (1313)
Q Consensus 167 ~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~ 246 (1313)
..+...+..+...+++++|+..+.+++...+.. ....+..++..+...+++++|+.++.+++...+
T Consensus 168 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~------ 233 (291)
T COG0457 168 EALLALGALLEALGRYEEALELLEKALKLNPDD--------DAEALLNLGLLYLKLGKYEEALEYYEKALELDP------ 233 (291)
T ss_pred HHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc--------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCc------
Confidence 445555555666677777777777776663320 345566667777777777777777777766654
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 000742 247 GEAKGYINLGELHYRVQKYDEAILCYQKALNLAQS 281 (1313)
Q Consensus 247 ~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~ 281 (1313)
.....+..++..+...+.+++|...+.+++...+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 234 DNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 23445555555555555566777666666666554
No 224
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.04 E-value=2e-06 Score=102.54 Aligned_cols=123 Identities=25% Similarity=0.243 Sum_probs=74.8
Q ss_pred eeecCCCCCChHHHHHHHHHhhcCCccEEEccCCCCCCchHHHHHHHHhcCCC-cccEEEccCCCCChhHHHHHHHHHhc
Q 000742 1006 ELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQ-ESVKLDLSYCGLESTCIHKFTASVSL 1084 (1313)
Q Consensus 1006 ~L~Ls~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~-~L~~L~Ls~n~l~~~~~~~l~~~l~~ 1084 (1313)
.|.++.+.+.... ..+...+.++.|++.+|.+++.. ... .... +|+.|++++|.+... +..+..
T Consensus 97 ~l~~~~~~~~~~~----~~~~~~~~l~~L~l~~n~i~~i~-----~~~-~~~~~nL~~L~l~~N~i~~l-----~~~~~~ 161 (394)
T COG4886 97 SLDLNLNRLRSNI----SELLELTNLTSLDLDNNNITDIP-----PLI-GLLKSNLKELDLSDNKIESL-----PSPLRN 161 (394)
T ss_pred eeeccccccccCc----hhhhcccceeEEecCCcccccCc-----ccc-ccchhhcccccccccchhhh-----hhhhhc
Confidence 4566666552221 12222356888888888876532 111 1222 688888888887664 234567
Q ss_pred CCCccEEEccCCCCChHHHHHHHHHhcCCCCceeEEEeecCCCCHHHHHHHHHHhhcCCCccEEEccCCC
Q 000742 1085 VHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNA 1154 (1313)
Q Consensus 1085 ~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~N~ 1154 (1313)
+++|+.|++++|++.+..... +.. ..|+.|++++|+++. ++..+.....|++|.+++|.
T Consensus 162 l~~L~~L~l~~N~l~~l~~~~-~~~-----~~L~~L~ls~N~i~~-----l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 162 LPNLKNLDLSFNDLSDLPKLL-SNL-----SNLNNLDLSGNKISD-----LPPEIELLSALEELDLSNNS 220 (394)
T ss_pred cccccccccCCchhhhhhhhh-hhh-----hhhhheeccCCcccc-----CchhhhhhhhhhhhhhcCCc
Confidence 788888888888887543322 111 137888888888873 44443444568888888884
No 225
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.04 E-value=4.7e-05 Score=91.80 Aligned_cols=142 Identities=15% Similarity=0.102 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCC-------
Q 000742 109 QRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDN------- 181 (1313)
Q Consensus 109 a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~------- 181 (1313)
+..++..|.-|... .+.+...+|+.+|++|+++ .|+++.++..++.+|.....
T Consensus 339 Ay~~~lrg~~~~~~-----~~~~~~~~A~~lle~Ai~l---------------dP~~a~a~A~la~~~~~~~~~~~~~~~ 398 (517)
T PRK10153 339 ALTLFYQAHHYLNS-----GDAKSLNKASDLLEEILKS---------------EPDFTYAQAEKALADIVRHSQQPLDEK 398 (517)
T ss_pred HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHh---------------CCCcHHHHHHHHHHHHHHHhcCCccHH
Confidence 34445556555433 2346788999999999998 56778888888877755422
Q ss_pred -HHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHH
Q 000742 182 -LEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHY 260 (1313)
Q Consensus 182 -~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~ 260 (1313)
..+|.....+++.+ ...+..+.+|..+|..+...|++++|..++++|+++.+ . +.+|..+|.++.
T Consensus 399 ~l~~a~~~~~~a~al-------~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p------s-~~a~~~lG~~~~ 464 (517)
T PRK10153 399 QLAALSTELDNIVAL-------PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM------S-WLNYVLLGKVYE 464 (517)
T ss_pred HHHHHHHHHHHhhhc-------ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC------C-HHHHHHHHHHHH
Confidence 33444444444443 11222357888899999999999999999999999864 3 679999999999
Q ss_pred HhcCHHHHHHHHHHHHHHHHHccC
Q 000742 261 RVQKYDEAILCYQKALNLAQSMED 284 (1313)
Q Consensus 261 ~~g~~~~A~~~~~kal~~~~~~~~ 284 (1313)
..|++++|++.|++|+.+.|..+.
T Consensus 465 ~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 465 LKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HcCCHHHHHHHHHHHHhcCCCCch
Confidence 999999999999999999987664
No 226
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.04 E-value=1.8e-05 Score=88.13 Aligned_cols=219 Identities=13% Similarity=0.010 Sum_probs=119.0
Q ss_pred chhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccC
Q 000742 4 DEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEH 83 (1313)
Q Consensus 4 ~~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 83 (1313)
..|+|..++.-+. ....+..........+.+.|...|+++..+.-... .......+...++..+...++
T Consensus 13 y~G~Y~~~i~e~~--~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---------~~~~~l~av~~la~y~~~~~~ 81 (290)
T PF04733_consen 13 YLGNYQQCINEAS--LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---------SSSPELQAVRLLAEYLSSPSD 81 (290)
T ss_dssp CTT-HHHHCHHHH--CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---------TSSCCCHHHHHHHHHHCTSTT
T ss_pred HhhhHHHHHHHhh--ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---------CCChhHHHHHHHHHHHhCccc
Confidence 3577888886555 22233344455567888889999998876654421 112224455556665544444
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhH
Q 000742 84 FKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLK 163 (1313)
Q Consensus 84 ~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p 163 (1313)
.+.++..+ +..+.-.....+ .......|.+|... |++++|++.+.+.-.
T Consensus 82 ~e~~l~~l-~~~~~~~~~~~~----~~~~~~~A~i~~~~--------~~~~~AL~~l~~~~~------------------ 130 (290)
T PF04733_consen 82 KESALEEL-KELLADQAGESN----EIVQLLAATILFHE--------GDYEEALKLLHKGGS------------------ 130 (290)
T ss_dssp HHCHHHHH-HHCCCTS---CH----HHHHHHHHHHHCCC--------CHHHHHHCCCTTTTC------------------
T ss_pred hHHHHHHH-HHHHHhcccccc----HHHHHHHHHHHHHc--------CCHHHHHHHHHccCc------------------
Confidence 44444444 322211111000 11223344444433 777777776654310
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHH
Q 000742 164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELR--MWDKSREHIEQDIIICKK 241 (1313)
Q Consensus 164 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g--~~~~A~~~~~kal~~~~~ 241 (1313)
.+.......+|..+++++.|.+.++.+.++. ++. ..+...-|.+....| ++.+|...|++..+.++
T Consensus 131 --lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~-------eD~--~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~- 198 (290)
T PF04733_consen 131 --LELLALAVQILLKMNRPDLAEKELKNMQQID-------EDS--ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFG- 198 (290)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS-------CCH--HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--
T ss_pred --ccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CcH--HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccC-
Confidence 2445556677888888888888887765542 221 122222222333333 57888888877544332
Q ss_pred hchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 000742 242 IEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQS 281 (1313)
Q Consensus 242 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~ 281 (1313)
.....+..+|.++..+|+|++|...+++|++..+.
T Consensus 199 -----~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 199 -----STPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp ------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred -----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 45677788888888888888888888888765543
No 227
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=6.4e-06 Score=86.22 Aligned_cols=212 Identities=19% Similarity=0.183 Sum_probs=121.0
Q ss_pred ccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHh
Q 000742 1031 LTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLL 1110 (1313)
Q Consensus 1031 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~~l 1110 (1313)
+..|.+.++.|...|.... +...++.++.|||.+|.|++. ..++..+.++|.|+.|+||.|++... +..+-
T Consensus 47 ~ellvln~~~id~~gd~~~---~~~~~~~v~elDL~~N~iSdW--seI~~ile~lP~l~~LNls~N~L~s~-I~~lp--- 117 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVML---FGSSVTDVKELDLTGNLISDW--SEIGAILEQLPALTTLNLSCNSLSSD-IKSLP--- 117 (418)
T ss_pred hhhheecCCCCCcchhHHH---HHHHhhhhhhhhcccchhccH--HHHHHHHhcCccceEeeccCCcCCCc-cccCc---
Confidence 4455666666766654332 223346789999999999876 33566678899999999999998632 11211
Q ss_pred cCCCCceeEEEeecCCCCHHHHHHHHHHhhcCCCccEEEccCCCCChh-----hhhhhcccccccCCccccccccccccc
Q 000742 1111 MNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASKEL-----TLQQNLSSVNSENLQPALKTSDCVSKE 1185 (1313)
Q Consensus 1111 ~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~N~i~~~-----~~~~~l~~l~~~~l~~n~~~~~~~~~~ 1185 (1313)
-|-.+|++|.|.+..+.-.. ....+...|.+++|.+|.|.+... -..-..+.+..+.+..|...- |
T Consensus 118 -~p~~nl~~lVLNgT~L~w~~---~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~-----w 188 (418)
T KOG2982|consen 118 -LPLKNLRVLVLNGTGLSWTQ---STSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQL-----W 188 (418)
T ss_pred -ccccceEEEEEcCCCCChhh---hhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHH-----H
Confidence 12346999999999886443 445567777888888888843221 111111222233333331111 0
Q ss_pred ccccccccccccCCCCcccccccCCccchhhhccccCCCCcccccccCCccchhhHH-HHHHHHhccccCceecCCCCCC
Q 000742 1186 VDTDQHGLFAMNTDCNDLEVADSEDDKIRVESAASGFDNSCTSSCQKNSSFECQFVQ-ELSSAIGMAKPLQLLDLSNNGF 1264 (1313)
Q Consensus 1186 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~l~~~l~~~~~L~~LdLs~N~l 1264 (1313)
. ..|....-.+++..+-+..|+++.+..-. .+.-.+.+.-|+|+.|+|-. .-.+.+..+++|..|-+++|++
T Consensus 189 ~-----~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek--~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 189 L-----NKNKLSRIFPNVNSVFVCEGPLKTESSEK--GSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPL 261 (418)
T ss_pred H-----HHHhHHhhcccchheeeecCcccchhhcc--cCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcc
Confidence 0 01111222355566666666665443211 11111244457777777652 2245677788888888888887
Q ss_pred CHH
Q 000742 1265 STQ 1267 (1313)
Q Consensus 1265 ~~~ 1267 (1313)
.+.
T Consensus 262 ~d~ 264 (418)
T KOG2982|consen 262 SDP 264 (418)
T ss_pred ccc
Confidence 763
No 228
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.00 E-value=2.6e-05 Score=71.05 Aligned_cols=97 Identities=29% Similarity=0.457 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHH
Q 000742 70 TCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQT 149 (1313)
Q Consensus 70 ~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~ 149 (1313)
+++.+|.++...|++++|+.++ +++++..+... .++..+|.+|... +++++|+.++++++....
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~--------~~~~~a~~~~~~~~~~~~- 65 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYY-EKALELDPDNA------DAYYNLAAAYYKL--------GKYEEALEDYEKALELDP- 65 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHH-HHHHhcCCccH------HHHHHHHHHHHHH--------HHHHHHHHHHHHHHhCCC-
Confidence 5778999999999999999999 99988765542 5678899999987 999999999999887622
Q ss_pred hccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHh
Q 000742 150 LKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEIC 196 (1313)
Q Consensus 150 ~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 196 (1313)
....++..+|.++...|++++|..++.++++..
T Consensus 66 --------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 66 --------------DNAKAYYNLGLAYYKLGKYEEALEAYEKALELD 98 (100)
T ss_pred --------------cchhHHHHHHHHHHHHHhHHHHHHHHHHHHccC
Confidence 224688999999999999999999999988763
No 229
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.98 E-value=0.00015 Score=68.57 Aligned_cols=102 Identities=18% Similarity=0.120 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000742 110 RACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFL 189 (1313)
Q Consensus 110 ~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~ 189 (1313)
.+.+.+|.++..+ |+.++|+.+|++++... +. .+....++..+|..|..+|++++|+..+
T Consensus 2 ~~~~~~A~a~d~~--------G~~~~Ai~~Y~~Al~~g--L~----------~~~~~~a~i~lastlr~LG~~deA~~~L 61 (120)
T PF12688_consen 2 RALYELAWAHDSL--------GREEEAIPLYRRALAAG--LS----------GADRRRALIQLASTLRNLGRYDEALALL 61 (120)
T ss_pred chHHHHHHHHHhc--------CCHHHHHHHHHHHHHcC--CC----------chHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4678899999988 99999999999998751 11 2355789999999999999999999999
Q ss_pred HHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000742 190 IRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDII 237 (1313)
Q Consensus 190 ~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~ 237 (1313)
++++.-++. ++....+...++.++...|++++|+..+-.++.
T Consensus 62 ~~~~~~~p~------~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 62 EEALEEFPD------DELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCC------ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999876543 334556667789999999999999999987765
No 230
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.92 E-value=0.027 Score=61.94 Aligned_cols=302 Identities=13% Similarity=0.012 Sum_probs=197.4
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 000742 33 VIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRAC 112 (1313)
Q Consensus 33 ~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~ 112 (1313)
.-|.+....|+-..|.+.-.++-.+.. .+...-++..-++.-.-.|+|+.|.+-| +-++. .|.. + +
T Consensus 89 StGliAagAGda~lARkmt~~~~~lls----sDqepLIhlLeAQaal~eG~~~~Ar~kf-eAMl~-dPEt-------R-l 154 (531)
T COG3898 89 STGLIAAGAGDASLARKMTARASKLLS----SDQEPLIHLLEAQAALLEGDYEDARKKF-EAMLD-DPET-------R-L 154 (531)
T ss_pred hhhhhhhccCchHHHHHHHHHHHhhhh----ccchHHHHHHHHHHHHhcCchHHHHHHH-HHHhc-ChHH-------H-H
Confidence 456777788999999999888876552 2334566667778888889999999998 65553 2221 1 1
Q ss_pred HHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000742 113 TQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRG 192 (1313)
Q Consensus 113 ~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~a 192 (1313)
..|--.|..- ...|..+.|.+|-+.|..... ....+....-......|+++.|++..+..
T Consensus 155 lGLRgLyleA-----qr~GareaAr~yAe~Aa~~Ap---------------~l~WA~~AtLe~r~~~gdWd~AlkLvd~~ 214 (531)
T COG3898 155 LGLRGLYLEA-----QRLGAREAARHYAERAAEKAP---------------QLPWAARATLEARCAAGDWDGALKLVDAQ 214 (531)
T ss_pred HhHHHHHHHH-----HhcccHHHHHHHHHHHHhhcc---------------CCchHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 2222222221 133899999999999987744 33556666666778889999999999877
Q ss_pred HhHhhhhccCCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHH
Q 000742 193 LEICNEEEVSEDDDGRSRLHHNLGNVYME-LRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILC 271 (1313)
Q Consensus 193 l~~~~~~~~~~~~~~~~~~~~~lg~~y~~-~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 271 (1313)
.....- ..+......+-..-+..... .-+...|...-.++.++.+ +..-+-..-+..+++.|+..++-..
T Consensus 215 ~~~~vi---e~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~p------dlvPaav~AAralf~d~~~rKg~~i 285 (531)
T COG3898 215 RAAKVI---EKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAP------DLVPAAVVAARALFRDGNLRKGSKI 285 (531)
T ss_pred HHHHhh---chhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC------ccchHHHHHHHHHHhccchhhhhhH
Confidence 654221 11222233333333333322 2368888888888888866 6667777788999999999999999
Q ss_pred HHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHH
Q 000742 272 YQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSS 351 (1313)
Q Consensus 272 ~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~ 351 (1313)
++.+-+..|.- .+..+|...-.-
T Consensus 286 lE~aWK~ePHP-----~ia~lY~~ar~g---------------------------------------------------- 308 (531)
T COG3898 286 LETAWKAEPHP-----DIALLYVRARSG---------------------------------------------------- 308 (531)
T ss_pred HHHHHhcCCCh-----HHHHHHHHhcCC----------------------------------------------------
Confidence 99887765421 122222111110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Q 000742 352 MIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLD 431 (1313)
Q Consensus 352 ~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~ 431 (1313)
+.+++-++++..+. ...++.++.....++.-+.-|+|..|..--+.+..+.+ ...+|..|+.+-.
T Consensus 309 -----dta~dRlkRa~~L~---slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p-------res~~lLlAdIee 373 (531)
T COG3898 309 -----DTALDRLKRAKKLE---SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP-------RESAYLLLADIEE 373 (531)
T ss_pred -----CcHHHHHHHHHHHH---hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc-------hhhHHHHHHHHHh
Confidence 11112222222221 23456667888889999999999999988888776644 4556888898887
Q ss_pred Hc-CCHHHHHHHHHHHHHH
Q 000742 432 SN-GDWAGALDAFQEGYRI 449 (1313)
Q Consensus 432 ~~-g~~~~A~~~~~kAl~i 449 (1313)
.. |+-.++...+-++++-
T Consensus 374 AetGDqg~vR~wlAqav~A 392 (531)
T COG3898 374 AETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hccCchHHHHHHHHHHhcC
Confidence 65 9999998888888765
No 231
>PRK15331 chaperone protein SicA; Provisional
Probab=97.90 E-value=6.1e-05 Score=73.71 Aligned_cols=101 Identities=14% Similarity=0.118 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000742 162 LKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKK 241 (1313)
Q Consensus 162 ~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~ 241 (1313)
.+...+..+..|.-++..|++++|...|+-.... ++.....+..||.++..+++|++|+..|-.|..+..
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~---------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~- 102 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY---------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK- 102 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-
Confidence 3467788899999999999999999999887665 333466789999999999999999999999998866
Q ss_pred hchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 000742 242 IEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALN 277 (1313)
Q Consensus 242 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~ 277 (1313)
..+...+..|.+|..+|+.++|+.+|+.+++
T Consensus 103 -----~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 103 -----NDYRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred -----CCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 5566689999999999999999999999998
No 232
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.90 E-value=0.00012 Score=81.82 Aligned_cols=253 Identities=9% Similarity=0.028 Sum_probs=144.4
Q ss_pred HHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCC
Q 000742 77 VYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPAT 156 (1313)
Q Consensus 77 ~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~ 156 (1313)
-++..|+|..++.-+ . ..+ .+..........+.+.|..+ |+++..+.-. .+.. .+.
T Consensus 10 n~fy~G~Y~~~i~e~-~----~~~--~~~~~~~e~~~~~~Rs~iAl--------g~~~~vl~ei-------~~~~--~~~ 65 (290)
T PF04733_consen 10 NQFYLGNYQQCINEA-S----LKS--FSPENKLERDFYQYRSYIAL--------GQYDSVLSEI-------KKSS--SPE 65 (290)
T ss_dssp HHHCTT-HHHHCHHH-H----CHT--STCHHHHHHHHHHHHHHHHT--------T-HHHHHHHS--------TTS--SCC
T ss_pred HHHHhhhHHHHHHHh-h----ccC--CCchhHHHHHHHHHHHHHHc--------CChhHHHHHh-------ccCC--Chh
Confidence 355689999988666 4 111 12223345566777788777 7665443222 1111 111
Q ss_pred CcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000742 157 SRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDI 236 (1313)
Q Consensus 157 ~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal 236 (1313)
..+...++..+...++.+.++..++..+.- ........+....|.+|...|++++|++.+.+.
T Consensus 66 ---------l~av~~la~y~~~~~~~e~~l~~l~~~~~~-------~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~- 128 (290)
T PF04733_consen 66 ---------LQAVRLLAEYLSSPSDKESALEELKELLAD-------QAGESNEIVQLLAATILFHEGDYEEALKLLHKG- 128 (290)
T ss_dssp ---------CHHHHHHHHHHCTSTTHHCHHHHHHHCCCT-------S---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-
T ss_pred ---------HHHHHHHHHHHhCccchHHHHHHHHHHHHh-------ccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-
Confidence 234455565555545666666655544322 112123345667788898999999999888764
Q ss_pred HHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000742 237 IICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNL 316 (1313)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~ 316 (1313)
...........+|..+++++.|.+.++.+.++. +.. .+.+ +...
T Consensus 129 ----------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~----eD~-~l~q----La~a----------------- 172 (290)
T PF04733_consen 129 ----------GSLELLALAVQILLKMNRPDLAEKELKNMQQID----EDS-ILTQ----LAEA----------------- 172 (290)
T ss_dssp ----------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS----CCH-HHHH----HHHH-----------------
T ss_pred ----------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CcH-HHHH----HHHH-----------------
Confidence 223445556788999999999998887765432 221 1111 0000
Q ss_pred HHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-hhhHHHHHHHHHHHHHhhC
Q 000742 317 KKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDK-GKLSDSFLVIGESYQKLRK 395 (1313)
Q Consensus 317 ~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~-~~~a~~~~~lg~~y~~~g~ 395 (1313)
.+....| ...+.+|..+|++. .+. +..+.++..+|.++..+|+
T Consensus 173 -----wv~l~~g------------------------~e~~~~A~y~f~El-------~~~~~~t~~~lng~A~~~l~~~~ 216 (290)
T PF04733_consen 173 -----WVNLATG------------------------GEKYQDAFYIFEEL-------SDKFGSTPKLLNGLAVCHLQLGH 216 (290)
T ss_dssp -----HHHHHHT------------------------TTCCCHHHHHHHHH-------HCCS--SHHHHHHHHHHHHHCT-
T ss_pred -----HHHHHhC------------------------chhHHHHHHHHHHH-------HhccCCCHHHHHHHHHHHHHhCC
Confidence 0000000 01233333333332 222 3456788899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHH
Q 000742 396 FNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDW-AGALDAFQEGYR 448 (1313)
Q Consensus 396 ~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~-~~A~~~~~kAl~ 448 (1313)
|++|...+++|++. .+..+.++.+++.+...+|+. +.+.+++.+...
T Consensus 217 ~~eAe~~L~~al~~------~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 217 YEEAEELLEEALEK------DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHCCC-------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHh------ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 99999999998853 346678899999999999988 555566665443
No 233
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.89 E-value=1.6e-05 Score=67.00 Aligned_cols=63 Identities=24% Similarity=0.404 Sum_probs=57.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 000742 213 HNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQS 281 (1313)
Q Consensus 213 ~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~ 281 (1313)
+.+|..++..|++++|+..|+++++..+ ....+++.+|.++..+|++++|+.+|+++++..|.
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P------~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDP------DNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCST------THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 3689999999999999999999999865 78999999999999999999999999999998775
No 234
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.89 E-value=4.9e-05 Score=94.33 Aligned_cols=146 Identities=20% Similarity=0.143 Sum_probs=73.8
Q ss_pred CCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCCCCCChhhHHHHHH
Q 000742 917 TRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLV 996 (1313)
Q Consensus 917 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 996 (1313)
.+|++||++|...-..+. ..+.-..+|+|++|.+++-.+....+. ....+.++|..||+|+.++ +. +.
T Consensus 122 ~nL~~LdI~G~~~~s~~W--~~kig~~LPsL~sL~i~~~~~~~~dF~---~lc~sFpNL~sLDIS~TnI-~n------l~ 189 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGW--PKKIGTMLPSLRSLVISGRQFDNDDFS---QLCASFPNLRSLDISGTNI-SN------LS 189 (699)
T ss_pred HhhhhcCccccchhhccH--HHHHhhhCcccceEEecCceecchhHH---HHhhccCccceeecCCCCc-cC------cH
Confidence 466667766653322211 112222456666776666555543322 2334566677777776663 11 13
Q ss_pred hhccCCccceeecCCCCCChHHHHHHHHHhhcCCccEEEccCCCCCCch--HHHHHHHHhcCCCcccEEEccCCCCChhH
Q 000742 997 KLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDG--SLQLVESLFSRAQESVKLDLSYCGLESTC 1074 (1313)
Q Consensus 997 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~i~~~~--~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 1074 (1313)
+++.+++|+.|.+.+-.+.. ...+..+...++|+.||+|.....+.. +....+. ...+|+|+.||.|+..++...
T Consensus 190 GIS~LknLq~L~mrnLe~e~--~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec-~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 190 GISRLKNLQVLSMRNLEFES--YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLEC-GMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred HHhccccHHHHhccCCCCCc--hhhHHHHhcccCCCeeeccccccccchHHHHHHHHh-cccCccccEEecCCcchhHHH
Confidence 45566666666666655543 223334444555777777665443322 1111111 123456666666666665554
Q ss_pred HHH
Q 000742 1075 IHK 1077 (1313)
Q Consensus 1075 ~~~ 1077 (1313)
...
T Consensus 267 le~ 269 (699)
T KOG3665|consen 267 LEE 269 (699)
T ss_pred HHH
Confidence 333
No 235
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.89 E-value=6.9e-05 Score=82.00 Aligned_cols=105 Identities=12% Similarity=0.025 Sum_probs=88.0
Q ss_pred HHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHH
Q 000742 29 RWANVIGDIL-KNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVE 107 (1313)
Q Consensus 29 ~~~~~lg~~y-~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~ 107 (1313)
...+..|..+ +..|+|++|+..|++.++.+|.. .....+++++|.+|+..|+|++|+.+| +++++.+|+.+.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s---~~a~~A~y~LG~~y~~~g~~~~A~~~f-~~vv~~yP~s~~--- 215 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDS---TYQPNANYWLGQLNYNKGKKDDAAYYF-ASVVKNYPKSPK--- 215 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC---cchHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHCCCCcc---
Confidence 3456666665 66799999999999999988543 344689999999999999999999999 999998876544
Q ss_pred HHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHH
Q 000742 108 QQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQ 148 (1313)
Q Consensus 108 ~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~ 148 (1313)
...+++.+|.+|..+ |++++|+.+|+++++.+.
T Consensus 216 ~~dAl~klg~~~~~~--------g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 216 AADAMFKVGVIMQDK--------GDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred hhHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHCc
Confidence 347899999999988 999999999999987743
No 236
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.87 E-value=0.0005 Score=63.13 Aligned_cols=90 Identities=23% Similarity=0.171 Sum_probs=78.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHH
Q 000742 131 YSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSR 210 (1313)
Q Consensus 131 ~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 210 (1313)
|+.+.|++.|.+++.++ |..+.+|++.|..|.-+|+.++|++-+++|+++... .......
T Consensus 57 g~Ld~AlE~F~qal~l~---------------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~-----~trtacq 116 (175)
T KOG4555|consen 57 GDLDGALELFGQALCLA---------------PERASAYNNRAQALRLQGDDEEALDDLNKALELAGD-----QTRTACQ 116 (175)
T ss_pred cchHHHHHHHHHHHHhc---------------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCc-----cchHHHH
Confidence 99999999999999984 455889999999999999999999999999999543 2455677
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742 211 LHHNLGNVYMELRMWDKSREHIEQDIIICK 240 (1313)
Q Consensus 211 ~~~~lg~~y~~~g~~~~A~~~~~kal~~~~ 240 (1313)
++...|.+|..+|+-+.|...|+.|.++..
T Consensus 117 a~vQRg~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 117 AFVQRGLLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence 899999999999999999999999988754
No 237
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.85 E-value=0.00019 Score=86.68 Aligned_cols=142 Identities=9% Similarity=-0.103 Sum_probs=104.0
Q ss_pred cCcHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccCh--------HHHHHH
Q 000742 22 GNRQEEARWANVIGDILKNRGE---YVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHF--------KDALIY 90 (1313)
Q Consensus 22 ~~~~~~a~~~~~lg~~y~~~g~---~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~--------~~A~~~ 90 (1313)
.+....|.-++..|..|...++ +.+|+.+|++|+++.|.. +.++-.++.+|.....+ .+|...
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~------a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~ 406 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDF------TYAQAEKALADIVRHSQQPLDEKQLAALSTE 406 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 4556677778888988877655 889999999999998433 67777777777554322 233333
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHH
Q 000742 91 QVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHN 170 (1313)
Q Consensus 91 ~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~ 170 (1313)
. ++++.+.....+ ..++..+|..+... |++++|..++++|+.+. |. +.+|.
T Consensus 407 ~-~~a~al~~~~~~----~~~~~ala~~~~~~--------g~~~~A~~~l~rAl~L~---------------ps-~~a~~ 457 (517)
T PRK10153 407 L-DNIVALPELNVL----PRIYEILAVQALVK--------GKTDEAYQAINKAIDLE---------------MS-WLNYV 457 (517)
T ss_pred H-HHhhhcccCcCC----hHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHcC---------------CC-HHHHH
Confidence 3 333333111111 35677777777655 99999999999999982 22 57999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhHhhh
Q 000742 171 NIGMLQMELDNLEEAKKFLIRGLEICNE 198 (1313)
Q Consensus 171 ~la~~y~~~g~~~~A~~~~~~al~~~~~ 198 (1313)
.+|.++...|++++|++.|++|+.+.+.
T Consensus 458 ~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 458 LLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999998544
No 238
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.85 E-value=0.01 Score=64.35 Aligned_cols=198 Identities=25% Similarity=0.297 Sum_probs=118.5
Q ss_pred hCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 000742 41 RGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYY 120 (1313)
Q Consensus 41 ~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~ 120 (1313)
.+.+..+...+..++..... ..........+..+...+++..+...+ ..++.. .........+..++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~ 106 (291)
T COG0457 36 LGELAEALELLEEALELLPN----SDLAGLLLLLALALLKLGRLEEALELL-EKALEL----ELLPNLAEALLNLGLLLE 106 (291)
T ss_pred HhhHHHHHHHHHHHHhcCcc----ccchHHHHHHHHHHHHcccHHHHHHHH-HHHHhh----hhccchHHHHHHHHHHHH
Confidence 45566666666665544321 012466777888888888888888887 766654 111122345566666666
Q ss_pred HHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhHhhhh
Q 000742 121 EMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGM-LQMELDNLEEAKKFLIRGLEICNEE 199 (1313)
Q Consensus 121 ~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~-~y~~~g~~~~A~~~~~~al~~~~~~ 199 (1313)
.. +.+..|+..+.++....... .......+. ++...|++++|...+.+++...+.
T Consensus 107 ~~--------~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~- 162 (291)
T COG0457 107 AL--------GKYEEALELLEKALALDPDP---------------DLAEALLALGALYELGDYEEALELYEKALELDPE- 162 (291)
T ss_pred HH--------hhHHHHHHHHHHHHcCCCCc---------------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-
Confidence 55 66666666666665542111 112222333 677778888888888877553110
Q ss_pred ccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 000742 200 EVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLA 279 (1313)
Q Consensus 200 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~ 279 (1313)
.......+...+..+...++++.|+..+.+++...+.. ....+..++..+...+++++|+..+.+++...
T Consensus 163 -----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 232 (291)
T COG0457 163 -----LNELAEALLALGALLEALGRYEEALELLEKALKLNPDD-----DAEALLNLGLLYLKLGKYEEALEYYEKALELD 232 (291)
T ss_pred -----ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-----chHHHHHhhHHHHHcccHHHHHHHHHHHHhhC
Confidence 02244455555666777777777777777777775511 45666677777777777777777777766665
Q ss_pred HH
Q 000742 280 QS 281 (1313)
Q Consensus 280 ~~ 281 (1313)
+.
T Consensus 233 ~~ 234 (291)
T COG0457 233 PD 234 (291)
T ss_pred cc
Confidence 53
No 239
>PLN03150 hypothetical protein; Provisional
Probab=97.82 E-value=1.9e-05 Score=98.62 Aligned_cols=107 Identities=26% Similarity=0.312 Sum_probs=67.7
Q ss_pred cCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCCCCCChhhHHHHHHhh
Q 000742 919 LGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLVKL 998 (1313)
Q Consensus 919 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l 998 (1313)
++.|+|++|.+... ++..+..+++|+.|+|++|.|++ .++..+..+++|+.|+|++|. +++. ++..+
T Consensus 420 v~~L~L~~n~L~g~----ip~~i~~L~~L~~L~Ls~N~l~g----~iP~~~~~l~~L~~LdLs~N~-lsg~----iP~~l 486 (623)
T PLN03150 420 IDGLGLDNQGLRGF----IPNDISKLRHLQSINLSGNSIRG----NIPPSLGSITSLEVLDLSYNS-FNGS----IPESL 486 (623)
T ss_pred EEEEECCCCCcccc----CCHHHhCCCCCCEEECCCCcccC----cCChHHhCCCCCCEEECCCCC-CCCC----CchHH
Confidence 66777777777654 56666677777777777777764 445556667777777777776 3332 34455
Q ss_pred ccCCccceeecCCCCCChHHHHHHHHHhhcCCccEEEccCCC
Q 000742 999 DTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTN 1040 (1313)
Q Consensus 999 ~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~ 1040 (1313)
..+++|+.|+|++|.+++..+..+.... .++..+++.+|.
T Consensus 487 ~~L~~L~~L~Ls~N~l~g~iP~~l~~~~--~~~~~l~~~~N~ 526 (623)
T PLN03150 487 GQLTSLRILNLNGNSLSGRVPAALGGRL--LHRASFNFTDNA 526 (623)
T ss_pred hcCCCCCEEECcCCcccccCChHHhhcc--ccCceEEecCCc
Confidence 6677777777777777666665554321 234556666553
No 240
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.80 E-value=5.2e-05 Score=63.79 Aligned_cols=62 Identities=13% Similarity=0.147 Sum_probs=55.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742 170 NNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICK 240 (1313)
Q Consensus 170 ~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~ 240 (1313)
+.+|..++..|++++|+..|+++++. .|....+++.+|.++..+|++++|+.+|+++++..|
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~---------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQ---------DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCC---------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHH---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 35789999999999999999999987 455789999999999999999999999999998866
No 241
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.80 E-value=0.00035 Score=64.09 Aligned_cols=104 Identities=13% Similarity=0.134 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhh
Q 000742 168 AHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQG 247 (1313)
Q Consensus 168 ~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~ 247 (1313)
.+-.-|.+....|+.+.|++.|.+++.++++ .+.+|.|.+.+|..+|+.++|+..+++|+++.-.. ...
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~---------raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~--trt 113 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLAPE---------RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ--TRT 113 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhccc---------chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc--chH
Confidence 3444566677789999999999999999766 68899999999999999999999999999996522 234
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc
Q 000742 248 EAKGYINLGELHYRVQKYDEAILCYQKALNLAQSM 282 (1313)
Q Consensus 248 ~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~ 282 (1313)
.-.++...|.+|..+|+-+.|..-|+.|-++...+
T Consensus 114 acqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 114 ACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHH
Confidence 56789999999999999999999999998876543
No 242
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.79 E-value=0.0018 Score=66.99 Aligned_cols=244 Identities=13% Similarity=0.073 Sum_probs=161.6
Q ss_pred hhhHHHHHHHHHHHHHhcCcHHH--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHcc
Q 000742 5 EMQMSEAKRAYRSAKEEGNRQEE--ARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLE 82 (1313)
Q Consensus 5 ~~~~~~A~~~l~~a~~~~~~~~~--a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g 82 (1313)
....++|+..|+++++..+...+ ..++.++-.+++..|+|++-...|++.+......-....--...+.+-..-....
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 34788999999999988655332 3568889999999999999999999998877654332222222333222222334
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhh
Q 000742 83 HFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFL 162 (1313)
Q Consensus 83 ~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~ 162 (1313)
+.+--.++| +..++..++..+.......-..+|.+|... ++|.+-.+.+++.-.-++.-....... -.
T Consensus 120 ~m~LLQ~FY-eTTL~ALkdAKNeRLWFKTNtKLgkl~fd~--------~e~~kl~KIlkqLh~SCq~edGedD~k---KG 187 (440)
T KOG1464|consen 120 NMDLLQEFY-ETTLDALKDAKNERLWFKTNTKLGKLYFDR--------GEYTKLQKILKQLHQSCQTEDGEDDQK---KG 187 (440)
T ss_pred hhHHHHHHH-HHHHHHHHhhhcceeeeeccchHhhhheeH--------HHHHHHHHHHHHHHHHhccccCchhhh---cc
Confidence 444445566 776766665544433334446789999877 788777777666655554322221111 12
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000742 163 KEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKI 242 (1313)
Q Consensus 163 p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~ 242 (1313)
....++|..--.+|..+.+-.+-...|++|+.+-..+ ..+.....+...=|..+.+.|+|++|-..|-+|.+-+...
T Consensus 188 tQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAI---PHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEs 264 (440)
T KOG1464|consen 188 TQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAI---PHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDES 264 (440)
T ss_pred chhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccC---CchHHHhHHHHcCCccccccchHHHHHhHHHHHHhccccc
Confidence 3567788888889999999888889999999886553 2233344445555778899999999999999998877665
Q ss_pred chhh-hHHHHHHHHHHHHHHhc
Q 000742 243 EHCQ-GEAKGYINLGELHYRVQ 263 (1313)
Q Consensus 243 ~~~~-~~~~~~~~la~~~~~~g 263 (1313)
+.+. ....-|.-+|..+.+.|
T Consensus 265 GspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 265 GSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred CCcchhHHHHHHHHHHHHHHcC
Confidence 5432 23344666777776654
No 243
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.77 E-value=7e-05 Score=92.93 Aligned_cols=149 Identities=21% Similarity=0.259 Sum_probs=105.5
Q ss_pred CCcCEEEecCCC-CCHHHHHHHHHHHHhcccCccceEEEccCCCCCHHHHHHHHhcccCCCCcCEEEecCCCCChhHHHH
Q 000742 858 KTVALLDLSHNL-LGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSY 936 (1313)
Q Consensus 858 ~~L~~L~Ls~n~-l~~~~~~~L~~~l~~~~~~~~l~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 936 (1313)
.+|++||+++.. +.......++.. .|+|++|.+++=.+.......+|. .+++|..||+|+.++++.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~------LPsL~sL~i~~~~~~~~dF~~lc~---sFpNL~sLDIS~TnI~nl---- 188 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTM------LPSLRSLVISGRQFDNDDFSQLCA---SFPNLRSLDISGTNISNL---- 188 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhh------CcccceEEecCceecchhHHHHhh---ccCccceeecCCCCccCc----
Confidence 478899998876 555556666664 567888888887775555555554 478999999999988874
Q ss_pred HHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCCCCCChh-hHHHHHHhhccCCccceeecCCCCCC
Q 000742 937 LSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGN-AITNLLVKLDTLKSFSELNLNGLKLS 1015 (1313)
Q Consensus 937 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~-~~~~~~~~l~~~~~L~~L~Ls~n~l~ 1015 (1313)
..++.+++|++|.+.+=.|.. ...+- .|..+++|+.||+|........ .+......-..+|.|+.||.|++.+.
T Consensus 189 --~GIS~LknLq~L~mrnLe~e~--~~~l~-~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 189 --SGISRLKNLQVLSMRNLEFES--YQDLI-DLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred --HHHhccccHHHHhccCCCCCc--hhhHH-HHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 567788889988888766654 11222 2456889999999988744444 23444555566889999999988888
Q ss_pred hHHHHHHHH
Q 000742 1016 KPVVDRLCQ 1024 (1313)
Q Consensus 1016 ~~~~~~l~~ 1024 (1313)
....+.+..
T Consensus 264 ~~~le~ll~ 272 (699)
T KOG3665|consen 264 EEILEELLN 272 (699)
T ss_pred HHHHHHHHH
Confidence 776665543
No 244
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.035 Score=58.35 Aligned_cols=227 Identities=14% Similarity=0.076 Sum_probs=159.8
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH----HHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHH
Q 000742 33 VIGDILKNRGEYVEALKWFRIDYDV----SVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQ 108 (1313)
Q Consensus 33 ~lg~~y~~~g~~~eAl~~~~~al~~----~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~ 108 (1313)
.+|+-....+++++|+..|.+.+.. ..+.. ...-.+...++.+|...|++..--+.. ...-+...+...+.
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~--nEqE~tvlel~~lyv~~g~~~~l~~~i-~~sre~m~~ftk~k-- 82 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTL--NEQEATVLELFKLYVSKGDYCSLGDTI-TSSREAMEDFTKPK-- 82 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhh--hHHHHHHHHHHHHHHhcCCcchHHHHH-HhhHHHHHHhcchh--
Confidence 4566777889999999999988765 22211 123456789999999999998766666 55555544443221
Q ss_pred HHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 000742 109 QRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKF 188 (1313)
Q Consensus 109 a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~ 188 (1313)
...+...++++.......++.-++.....++++.+-.... -....-..+...+++.|+|.+|+..
T Consensus 83 ------~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~f---------Lr~~Le~Kli~l~y~~~~Ysdalal 147 (421)
T COG5159 83 ------ITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKF---------LRLELECKLIYLLYKTGKYSDALAL 147 (421)
T ss_pred ------HHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHhcccHHHHHHH
Confidence 2222222333344455778888888888888876543211 2234456778899999999999999
Q ss_pred HHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchh-hhHHHHHHHHHHHHHHhcCHHH
Q 000742 189 LIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHC-QGEAKGYINLGELHYRVQKYDE 267 (1313)
Q Consensus 189 ~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 267 (1313)
....+.-.++. ++.+....++..-..+|....+..++...+..|-..+...--+ ...+..-..-|..+..-.+|.-
T Consensus 148 In~ll~ElKk~---DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dykt 224 (421)
T COG5159 148 INPLLHELKKY---DDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKT 224 (421)
T ss_pred HHHHHHHHHhh---cCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchh
Confidence 99998888886 7788888889999999999999999998888777665433222 2334444445777888899999
Q ss_pred HHHHHHHHHHHHHHc
Q 000742 268 AILCYQKALNLAQSM 282 (1313)
Q Consensus 268 A~~~~~kal~~~~~~ 282 (1313)
|..||-+|++-+...
T Consensus 225 A~SYF~Ea~Egft~l 239 (421)
T COG5159 225 ASSYFIEALEGFTLL 239 (421)
T ss_pred HHHHHHHHHhccccc
Confidence 999999999866543
No 245
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.71 E-value=8.6e-05 Score=78.98 Aligned_cols=99 Identities=17% Similarity=0.132 Sum_probs=89.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHH
Q 000742 170 NNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEA 249 (1313)
Q Consensus 170 ~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~ 249 (1313)
-..|..|+.+|+|++|++.|.+++...+ ..+..+.+.|.+|++++.|..|...+..|+.+.. .+.
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P---------~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~------~Y~ 165 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYP---------HNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK------LYV 165 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCC---------CCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH------HHH
Confidence 4467889999999999999999999844 3466889999999999999999999999999987 788
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcc
Q 000742 250 KGYINLGELHYRVQKYDEAILCYQKALNLAQSME 283 (1313)
Q Consensus 250 ~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~ 283 (1313)
.+|...|.+-..+|...+|.+.++.++++.|...
T Consensus 166 KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 166 KAYSRRMQARESLGNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccH
Confidence 9999999999999999999999999999988643
No 246
>PLN03150 hypothetical protein; Provisional
Probab=97.69 E-value=4.7e-05 Score=95.09 Aligned_cols=106 Identities=22% Similarity=0.250 Sum_probs=68.2
Q ss_pred ceEEEccCCCCCHHHHHHHHhcccCCCCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHh
Q 000742 891 DLTLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALG 970 (1313)
Q Consensus 891 l~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 970 (1313)
+..|+|++|.+....+..++.+ ++|+.|+|++|.|.+. ++..+..+++|+.|+|++|.+++ .++..+.
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L----~~L~~L~Ls~N~l~g~----iP~~~~~l~~L~~LdLs~N~lsg----~iP~~l~ 487 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKL----RHLQSINLSGNSIRGN----IPPSLGSITSLEVLDLSYNSFNG----SIPESLG 487 (623)
T ss_pred EEEEECCCCCccccCCHHHhCC----CCCCEEECCCCcccCc----CChHHhCCCCCCEEECCCCCCCC----CCchHHh
Confidence 4567777777765555555553 7777777777777654 66667777777777777777775 4455566
Q ss_pred cCCCccEEEeCCCCCCChhhHHHHHHhhcc-CCccceeecCCCC
Q 000742 971 AESTLAQLCIGYNSPVTGNAITNLLVKLDT-LKSFSELNLNGLK 1013 (1313)
Q Consensus 971 ~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~-~~~L~~L~Ls~n~ 1013 (1313)
.+++|++|+|++|. +++. ++..+.. ..++..+++.+|.
T Consensus 488 ~L~~L~~L~Ls~N~-l~g~----iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 488 QLTSLRILNLNGNS-LSGR----VPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cCCCCCEEECcCCc-cccc----CChHHhhccccCceEEecCCc
Confidence 77777777777777 3333 2222222 2355667777665
No 247
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.68 E-value=0.00018 Score=76.39 Aligned_cols=106 Identities=11% Similarity=0.049 Sum_probs=95.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhH
Q 000742 169 HNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGE 248 (1313)
Q Consensus 169 ~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~ 248 (1313)
.++.|.-++..|+|..|...|..-++-++. ......+++.||.+++.+|+|+.|...|..+++-.+ +.+..
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~------s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P---~s~KA 214 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPN------STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYP---KSPKA 214 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCC---CCCCC
Confidence 788899999999999999999999998776 566788999999999999999999999999888655 45667
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcc
Q 000742 249 AKGYINLGELHYRVQKYDEAILCYQKALNLAQSME 283 (1313)
Q Consensus 249 ~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~ 283 (1313)
+.+++.+|.+..++|+.++|...|++.++-+|...
T Consensus 215 pdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 215 PDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 78999999999999999999999999999887643
No 248
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=97.68 E-value=2.1e-05 Score=87.81 Aligned_cols=321 Identities=18% Similarity=0.053 Sum_probs=196.8
Q ss_pred HHHHHHhhccCCCeEEecCCCCCcCCHHHHHHHh--hcCCCcCEEEecCCCCCHHHHHHHHHHHHhcccCccceEEEccC
Q 000742 821 KLLKKLYISEVEDEVIVSECELQDISVTPLLNAL--HTHKTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHC 898 (1313)
Q Consensus 821 ~~l~~l~~~~~~~~l~l~~~~l~~~~~~~l~~~L--~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~~~~l~~L~Ls~ 898 (1313)
.++...........+.|.-|.+.......+.... ..++.++++||+.|.+.+...-.|..- ..-|+|..
T Consensus 126 sil~v~~~s~~l~~l~l~~cml~pdf~~kl~hs~~~rpnpr~r~~dls~npi~dkvpihl~~p---------~~pl~lr~ 196 (553)
T KOG4242|consen 126 SILGVPSPSAPLPPLGLLPCMLLPDFGQKLRHSTRARPNPRARQHDLSPNPIGDKVPIHLPQP---------GNPLSLRV 196 (553)
T ss_pred hhhccccccccCCccCchhccCchhhcccccchhhcCCcchhhhhccCCCcccccCCccccCC---------CCccchhh
Confidence 3343333334456678888888777666555554 444578999999999999776655541 12267888
Q ss_pred CCCCHHHHHHHHhcccCCCCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHH-HHHHHHHHhcCCCccE
Q 000742 899 NRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRT-IQKVADALGAESTLAQ 977 (1313)
Q Consensus 899 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~-~~~l~~~l~~~~~L~~ 977 (1313)
|.++...+..++.- .--..+++++|+.|...+.--. +.........++.++.+...+.-+- +..++ ...-+.|++
T Consensus 197 c~lsskfis~l~~q-sg~~~lteldls~n~~Kddip~-~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~--~g~~tkl~~ 272 (553)
T KOG4242|consen 197 CELSSKFISKLLIQ-SGRLWLTELDLSTNGGKDDIPR-TLNKKAGTLVLFKLDRSTTGIRLDLLTSPLA--AGRTTKLTF 272 (553)
T ss_pred hhhhhhHHHHhhhh-hccccccccccccCCCCccchh-HHHHhhhhhhhhcccccccccchhhcccccc--cccccccch
Confidence 88877776555421 1124689999999988776111 2222233346888888887775321 11211 233468999
Q ss_pred EEeCCCCCCChhhHHHHH----HhhccCCccceeecCCCCCChHHHHHHHH-HhhcCC--ccEEEccCCCCCCchHHHHH
Q 000742 978 LCIGYNSPVTGNAITNLL----VKLDTLKSFSELNLNGLKLSKPVVDRLCQ-LAKTSC--LTHLMLGCTNLGSDGSLQLV 1050 (1313)
Q Consensus 978 L~Ls~n~l~~~~~~~~~~----~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~-l~~~~~--L~~L~Ls~n~i~~~~~~~l~ 1050 (1313)
.+++.|. .......+.. ..++.-+++ +|++..+....+.+..+.- +..+.. =-.+++..|...+..+ +
T Consensus 273 ~kls~ng-~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~v--l- 347 (553)
T KOG4242|consen 273 GKLSRNG-TSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEV--L- 347 (553)
T ss_pred hhhccCC-CCcccccccccccccccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccch--h-
Confidence 9999988 4333233222 334445577 8888888877766555432 222222 2356777766654322 1
Q ss_pred HHHhcCCCcccEEEccCCCCChhHHHHHHHHHhcCCCccEEEccCCC---CChHHHHH-HHHHhcCCCCceeEEEeecCC
Q 000742 1051 ESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNP---IMKEGANA-LASLLMNPQCCLKVLVLSKCQ 1126 (1313)
Q Consensus 1051 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~---i~~~~~~~-l~~~l~~~~~~L~~L~Ls~n~ 1126 (1313)
++-... ..+++|.++.|++.+.+.... .+...++++.+++..-. +.+.+..+ ......+...-+..+.++.|.
T Consensus 348 eaci~g-~R~q~l~~rdnnldgeg~~vg--k~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~ 424 (553)
T KOG4242|consen 348 EACIFG-QRVQVLLQRDNNLDGEGGAVG--KRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGP 424 (553)
T ss_pred hccccc-eeeeEeecccccccccccccc--ceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCc
Confidence 221112 468999999999888765444 46677888888887643 22222221 111122223348889999998
Q ss_pred CCHHHHHHHHHHhhcCCCccEEEccCCCCChhhhhhh
Q 000742 1127 LGLAGVLQLIKALSENDTLEELNLADNASKELTLQQN 1163 (1313)
Q Consensus 1127 i~~~g~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~~ 1163 (1313)
++ .+.......+...+.+..|++++|..++.+-..+
T Consensus 425 lk-a~l~s~in~l~stqtl~kldisgn~mgd~gap~l 460 (553)
T KOG4242|consen 425 LK-AGLESAINKLLSTQTLAKLDISGNGMGDGGAPPL 460 (553)
T ss_pred cc-ccHHHHHHhhccCcccccccccCCCcccCCCCcC
Confidence 87 5566677778888899999999998888755544
No 249
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.67 E-value=3.1e-06 Score=70.11 Aligned_cols=60 Identities=22% Similarity=0.192 Sum_probs=36.3
Q ss_pred cccccccCCccchhhhccccCCCCcccccccCCccchhhHHHHHHHHhccccCceecCCCCCC
Q 000742 1202 DLEVADSEDDKIRVESAASGFDNSCTSSCQKNSSFECQFVQELSSAIGMAKPLQLLDLSNNGF 1264 (1313)
Q Consensus 1202 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~l~~~l~~~~~L~~LdLs~N~l 1264 (1313)
+|+.|++++|.|+.+++. .+...++|++|+|++|++...-+.+|..+++|++|+|++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~---~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPD---SFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTT---TTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHH---HHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 445555555555544332 233334555555555555544455788889999999999875
No 250
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.67 E-value=0.12 Score=60.70 Aligned_cols=104 Identities=17% Similarity=0.163 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-----HhhCCCCCchhHHHHHHHHHHHccChHHHHHHH------------
Q 000742 29 RWANVIGDILKNRGEYVEALKWFRIDYDVS-----VKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQ------------ 91 (1313)
Q Consensus 29 ~~~~~lg~~y~~~g~~~eAl~~~~~al~~~-----~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~------------ 91 (1313)
+.|..+|......-.++-|...|-+.-... +.. ..+..--...|.+-..-|+|++|.+.|
T Consensus 693 rLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl---~~i~s~~~q~aei~~~~g~feeaek~yld~drrDLAiel 769 (1189)
T KOG2041|consen 693 RLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRL---RTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDLAIEL 769 (1189)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHh---hhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhhhHHH
Confidence 447778888877777777777776542221 000 000011124455555668888887776
Q ss_pred ------HHHHHHHHHH---hcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHH
Q 000742 92 ------VKKHLELAKD---ASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSA 143 (1313)
Q Consensus 92 ------~~kal~l~~~---~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~A 143 (1313)
|-+.+++.+. ..+......++.++|..+..+ ..+++|.+||.+.
T Consensus 770 r~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~--------~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 770 RKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEM--------MEWEEAAKYYSYC 822 (1189)
T ss_pred HHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhc
Confidence 1122222222 223334445566666666655 6666666666554
No 251
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.67 E-value=0.002 Score=66.72 Aligned_cols=225 Identities=16% Similarity=0.145 Sum_probs=152.8
Q ss_pred hCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 000742 41 RGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYY 120 (1313)
Q Consensus 41 ~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~ 120 (1313)
..+.++|+.-|++++++-...... -..++-.+..+++++|+|++-+.+| ++.+...+..-.....-.+.+.+-..-.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeW--GFKALKQmiKI~f~l~~~~eMm~~Y-~qlLTYIkSAVTrNySEKsIN~IlDyiS 116 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEW--GFKALKQMIKINFRLGNYKEMMERY-KQLLTYIKSAVTRNYSEKSINSILDYIS 116 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchh--HHHHHHHHHHHHhccccHHHHHHHH-HHHHHHHHHHHhccccHHHHHHHHHHHh
Confidence 358999999999999987433222 2578888999999999999999999 9988776543211111111222211111
Q ss_pred HHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhc
Q 000742 121 EMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEE 200 (1313)
Q Consensus 121 ~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~ 200 (1313)
.. .+.+--.++|+..++..+...+.. .+......+|.+|+..++|.+-.+.+.+.-.-++..
T Consensus 117 tS--------~~m~LLQ~FYeTTL~ALkdAKNeR---------LWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~e- 178 (440)
T KOG1464|consen 117 TS--------KNMDLLQEFYETTLDALKDAKNER---------LWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTE- 178 (440)
T ss_pred hh--------hhhHHHHHHHHHHHHHHHhhhcce---------eeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccc-
Confidence 11 445555566666666555443332 345566789999999999988888877766665542
Q ss_pred cCCCc----hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 000742 201 VSEDD----DGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKAL 276 (1313)
Q Consensus 201 ~~~~~----~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal 276 (1313)
.+.++ .....+|..--.+|..+++-.+-...|++|+.+-..+..+.-...+..-=|..+.+.|+|++|-.-|=+|.
T Consensus 179 dGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 179 DGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred cCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 22222 22345555566788888888888999999999877666555455555556788999999999999888888
Q ss_pred HHHHHccChh
Q 000742 277 NLAQSMEDED 286 (1313)
Q Consensus 277 ~~~~~~~~~~ 286 (1313)
+-..+.+.+.
T Consensus 259 KNYDEsGspR 268 (440)
T KOG1464|consen 259 KNYDESGSPR 268 (440)
T ss_pred hcccccCCcc
Confidence 8777666554
No 252
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.66 E-value=0.0046 Score=76.17 Aligned_cols=292 Identities=20% Similarity=0.165 Sum_probs=183.0
Q ss_pred CHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHc-----cChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 000742 43 EYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRL-----EHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGR 117 (1313)
Q Consensus 43 ~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~-----g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~ 117 (1313)
+..+|.++|+.+-+.. ...+.+.+|.+|..- .|.+.|+.++ +.+.+-...... .....+.+.+|.
T Consensus 227 ~~~~a~~~~~~~a~~g--------~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l-~~aa~~~~~~a~-~~~~~a~~~lg~ 296 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLG--------HSEAQYALGICYLAGTYGVTQDLESAIEYL-KLAAESFKKAAT-KGLPPAQYGLGR 296 (552)
T ss_pred hhhHHHHHHHHHHhhc--------chHHHHHHHHHHhhccccccccHHHHHHHH-HHHHHHHHHHHh-hcCCccccHHHH
Confidence 3567888888775543 267778888888764 6899999999 988873111100 002246789999
Q ss_pred HHHHHhccCCcchh-hHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHH
Q 000742 118 TYYEMFLRSDDDHY-SIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELD---NLEEAKKFLIRGL 193 (1313)
Q Consensus 118 ~y~~l~~~~~~~~~-~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g---~~~~A~~~~~~al 193 (1313)
+|..-. .... +++.|..+|.+|.+. ..+.+.+.+|.+|.... ++..|.++|..|.
T Consensus 297 ~Y~~g~----~~~~~d~~~A~~~~~~aA~~-----------------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa 355 (552)
T KOG1550|consen 297 LYLQGL----GVEKIDYEKALKLYTKAAEL-----------------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAA 355 (552)
T ss_pred HHhcCC----CCccccHHHHHHHHHHHHhc-----------------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHH
Confidence 998631 0112 788899999988877 44678889999888765 5789999999987
Q ss_pred hHhhhhccCCCchHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh-cCHHHH
Q 000742 194 EICNEEEVSEDDDGRSRLHHNLGNVYMEL----RMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRV-QKYDEA 268 (1313)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~lg~~y~~~----g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A 268 (1313)
.. + ...+.+.+|.+|..- .+...|..+|+++.+. ..+.+.+.++.++..- +.+..+
T Consensus 356 ~~-------G----~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~--------g~~~A~~~~~~~~~~g~~~~~~~ 416 (552)
T KOG1550|consen 356 KA-------G----HILAIYRLALCYELGLGVERNLELAFAYYKKAAEK--------GNPSAAYLLGAFYEYGVGRYDTA 416 (552)
T ss_pred Hc-------C----ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc--------cChhhHHHHHHHHHHccccccHH
Confidence 65 2 345778888888763 5889999999999887 3455556666655433 677776
Q ss_pred HHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHH
Q 000742 269 ILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIE 348 (1313)
Q Consensus 269 ~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~ 348 (1313)
.-.+....+..-+...... + ....... .......
T Consensus 417 ~~~~~~~a~~g~~~~q~~a--~-~l~~~~~------------------------~~~~~~~------------------- 450 (552)
T KOG1550|consen 417 LALYLYLAELGYEVAQSNA--A-YLLDQSE------------------------EDLFSRG------------------- 450 (552)
T ss_pred HHHHHHHHHhhhhHHhhHH--H-HHHHhcc------------------------ccccccc-------------------
Confidence 6666555544322211100 0 0000000 0000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHh----hCHHHHHHHHHHHHHHHHHhCCchhHHHHHH
Q 000742 349 KSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKL----RKFNKAIKWYTKSWEMYKSIGNLEGQALAKV 424 (1313)
Q Consensus 349 ~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~----g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~ 424 (1313)
.......+..++.++. ....+.+...+|.+|+.- .+++.|..+|.+|... . +.+.+
T Consensus 451 ---~~~~~~~~~~~~~~a~--------~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~--------~-~~~~~ 510 (552)
T KOG1550|consen 451 ---VISTLERAFSLYSRAA--------AQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQ--------G-AQALF 510 (552)
T ss_pred ---cccchhHHHHHHHHHH--------hccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHh--------h-hHHHh
Confidence 0000111111222221 123346777788888665 4699999999998853 2 67799
Q ss_pred HHHHHHHHc---CCHHHHHHHHHHHHHHH
Q 000742 425 NMGNVLDSN---GDWAGALDAFQEGYRIA 450 (1313)
Q Consensus 425 ~lg~~y~~~---g~~~~A~~~~~kAl~i~ 450 (1313)
++|.+|..- .....|..+|.+|.+..
T Consensus 511 nlg~~~e~g~g~~~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 511 NLGYMHEHGEGIKVLHLAKRYYDQASEED 539 (552)
T ss_pred hhhhHHhcCcCcchhHHHHHHHHHHHhcC
Confidence 999999852 23789999999887753
No 253
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.63 E-value=0.0004 Score=79.16 Aligned_cols=74 Identities=12% Similarity=0.023 Sum_probs=64.5
Q ss_pred chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000742 159 SSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIII 238 (1313)
Q Consensus 159 ~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~ 238 (1313)
+...|..+.+++++|.+|+..|+|++|+..|++|+++.+. ......+|+++|.+|..+|++++|++++++|+++
T Consensus 68 ~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd------~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 68 SEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN------PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3457889999999999999999999999999999999443 2222357999999999999999999999999997
No 254
>PRK15331 chaperone protein SicA; Provisional
Probab=97.62 E-value=0.0012 Score=64.78 Aligned_cols=120 Identities=17% Similarity=0.061 Sum_probs=94.5
Q ss_pred hhHHHHHHHHHHHHHhc--------CcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHH
Q 000742 6 MQMSEAKRAYRSAKEEG--------NRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEV 77 (1313)
Q Consensus 6 ~~~~~A~~~l~~a~~~~--------~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~ 77 (1313)
.+.++-...+..++..+ -........+..|.-+++.|++++|...|+-..-.. +...+.+..+|.+
T Consensus 7 ~~~~~~~~~i~~al~~G~tlk~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d------~~n~~Y~~GLaa~ 80 (165)
T PRK15331 7 VSEERVAEMIWDAVSEGATLKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYD------FYNPDYTMGLAAV 80 (165)
T ss_pred hhHHHHHHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------cCcHHHHHHHHHH
Confidence 34455555556665532 234455668899999999999999999998765543 2336788999999
Q ss_pred HHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHH
Q 000742 78 YLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKL 146 (1313)
Q Consensus 78 y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l 146 (1313)
+..+++|++|+..| -.|..+.++.+. ..+..|.+|..+ ++.+.|...|..++..
T Consensus 81 ~Q~~k~y~~Ai~~Y-~~A~~l~~~dp~------p~f~agqC~l~l--------~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 81 CQLKKQFQKACDLY-AVAFTLLKNDYR------PVFFTGQCQLLM--------RKAAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHHH-HHHHHcccCCCC------ccchHHHHHHHh--------CCHHHHHHHHHHHHhC
Confidence 99999999999999 888888766554 368999999999 9999999999999873
No 255
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.60 E-value=0.00035 Score=74.20 Aligned_cols=103 Identities=16% Similarity=0.069 Sum_probs=89.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHH
Q 000742 31 ANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQR 110 (1313)
Q Consensus 31 ~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~ 110 (1313)
+|..|.-++..|+|.+|...|..-++.++. ......++++||++++.+|+|++|...| ..+.+-+|+.+-. ..
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~---s~~~~nA~yWLGe~~y~qg~y~~Aa~~f-~~~~k~~P~s~KA---pd 216 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPN---STYTPNAYYWLGESLYAQGDYEDAAYIF-ARVVKDYPKSPKA---PD 216 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CcccchhHHHHHHHHHhcccchHHHHHH-HHHHHhCCCCCCC---hH
Confidence 678899999999999999999998888753 3556899999999999999999999999 8888877666543 37
Q ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHH
Q 000742 111 ACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQ 148 (1313)
Q Consensus 111 a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~ 148 (1313)
+++.+|.+...+ ++.++|...|+++++-+.
T Consensus 217 allKlg~~~~~l--------~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 217 ALLKLGVSLGRL--------GNTDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHHHHHHHHh--------cCHHHHHHHHHHHHHHCC
Confidence 899999999988 999999999999987744
No 256
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.58 E-value=2.5e-05 Score=72.60 Aligned_cols=110 Identities=18% Similarity=0.226 Sum_probs=67.1
Q ss_pred ccceeecCCCCCChHHHHHHHHHhhcCCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCCChhHHHHHHHHH
Q 000742 1003 SFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASV 1082 (1313)
Q Consensus 1003 ~L~~L~Ls~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 1082 (1313)
.+..++|+.|.+.. ..+.+..+.....|+..+|++|.+.+ +++.+....+.+++|+|++|.|++. +..+
T Consensus 28 E~h~ldLssc~lm~-i~davy~l~~~~el~~i~ls~N~fk~-----fp~kft~kf~t~t~lNl~~neisdv-----PeE~ 96 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMY-IADAVYMLSKGYELTKISLSDNGFKK-----FPKKFTIKFPTATTLNLANNEISDV-----PEEL 96 (177)
T ss_pred HhhhcccccchhhH-HHHHHHHHhCCceEEEEecccchhhh-----CCHHHhhccchhhhhhcchhhhhhc-----hHHH
Confidence 45556666666532 23444555555667777777776643 3333333334677778888777765 4445
Q ss_pred hcCCCccEEEccCCCCChHHHHHHHHHhcCCCCceeEEEeecCCCCH
Q 000742 1083 SLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGL 1129 (1313)
Q Consensus 1083 ~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~ 1129 (1313)
..++.|+.|++++|++.. -+..++.+. ++-.|+..+|.+-.
T Consensus 97 Aam~aLr~lNl~~N~l~~-~p~vi~~L~-----~l~~Lds~~na~~e 137 (177)
T KOG4579|consen 97 AAMPALRSLNLRFNPLNA-EPRVIAPLI-----KLDMLDSPENARAE 137 (177)
T ss_pred hhhHHhhhcccccCcccc-chHHHHHHH-----hHHHhcCCCCcccc
Confidence 677778888888888763 344555533 26677777776543
No 257
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.00057 Score=73.52 Aligned_cols=110 Identities=15% Similarity=0.170 Sum_probs=94.2
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHH
Q 000742 162 LKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELR---MWDKSREHIEQDIII 238 (1313)
Q Consensus 162 ~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g---~~~~A~~~~~kal~~ 238 (1313)
+|..++-|..||.+|..+|++..|...|.+|+++.++ ....+..+|.+++... ...+|...+++++..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~---------n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~ 222 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD---------NPEILLGLAEALYYQAGQQMTAKARALLRQALAL 222 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc
Confidence 3466889999999999999999999999999999544 4567777787776653 467999999999999
Q ss_pred HHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChh
Q 000742 239 CKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDED 286 (1313)
Q Consensus 239 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~ 286 (1313)
.+ ....+.+.||..++..|+|.+|+..+++.++..|......
T Consensus 223 D~------~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr 264 (287)
T COG4235 223 DP------ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRR 264 (287)
T ss_pred CC------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchH
Confidence 76 8899999999999999999999999999999987655543
No 258
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.57 E-value=0.00049 Score=79.24 Aligned_cols=111 Identities=12% Similarity=0.153 Sum_probs=89.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHH
Q 000742 131 YSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSR 210 (1313)
Q Consensus 131 ~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 210 (1313)
++++.|+..+++..+. . +++...+|.++...++..+|++.+.++++..+ ..+.
T Consensus 183 ~~~~~ai~lle~L~~~-------~-----------pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p---------~d~~ 235 (395)
T PF09295_consen 183 QRYDEAIELLEKLRER-------D-----------PEVAVLLARVYLLMNEEVEAIRLLNEALKENP---------QDSE 235 (395)
T ss_pred ccHHHHHHHHHHHHhc-------C-----------CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC---------CCHH
Confidence 5666666666664433 1 23566789999899999999999999986633 2377
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 000742 211 LHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQK 274 (1313)
Q Consensus 211 ~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~k 274 (1313)
.+...|..+...++++.|++..++|+.+.| ....+|+.||.+|...|++++|+..++.
T Consensus 236 LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP------~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 236 LLNLQAEFLLSKKKYELALEIAKKAVELSP------SEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCc------hhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 888889999999999999999999999977 8889999999999999999999877663
No 259
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.57 E-value=5.8e-05 Score=80.26 Aligned_cols=102 Identities=13% Similarity=0.094 Sum_probs=85.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHH
Q 000742 212 HHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQ 291 (1313)
Q Consensus 212 ~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~ 291 (1313)
.-..|+-|+.+|+|++|+.+|.+++...+ ..+..+.+.|.+|++++.|..|...++.|+.+.......+...+.
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P------~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~ 173 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYP------HNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQ 173 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCC------CCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence 35678999999999999999999999876 788899999999999999999999999999999887776666666
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742 292 IDQNIETVKKAIEVMDELKKEEQNLKKL 319 (1313)
Q Consensus 292 ~~~~lg~~~~a~~~~~~a~~~~~~~~~l 319 (1313)
+-..+|...+|.+.++.++...+....+
T Consensus 174 AR~~Lg~~~EAKkD~E~vL~LEP~~~EL 201 (536)
T KOG4648|consen 174 ARESLGNNMEAKKDCETVLALEPKNIEL 201 (536)
T ss_pred HHHHHhhHHHHHHhHHHHHhhCcccHHH
Confidence 7777777777777777776555544333
No 260
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.57 E-value=0.00066 Score=65.16 Aligned_cols=108 Identities=12% Similarity=0.033 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchh
Q 000742 166 IDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHC 245 (1313)
Q Consensus 166 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~ 245 (1313)
+..++.-|...++.|+|++|++.|+....-++. .+....+...+|.+|+..+++++|+..+++-+++.|. +
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~------g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~---h 80 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPF------GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT---H 80 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---C
Confidence 567788888889999999999999999887665 4556678899999999999999999999999999874 4
Q ss_pred hhHHHHHHHHHHHHHHhcC---------------HHHHHHHHHHHHHHHHHc
Q 000742 246 QGEAKGYINLGELHYRVQK---------------YDEAILCYQKALNLAQSM 282 (1313)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~---------------~~~A~~~~~kal~~~~~~ 282 (1313)
+....+++..|.+++.+.. ..+|...|++.+...|..
T Consensus 81 p~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 81 PNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred CCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence 5677889999999988776 667777777777666654
No 261
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.56 E-value=0.039 Score=61.83 Aligned_cols=142 Identities=15% Similarity=0.195 Sum_probs=96.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhHhhh---hc--cC
Q 000742 129 DHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELD-NLEEAKKFLIRGLEICNE---EE--VS 202 (1313)
Q Consensus 129 ~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g-~~~~A~~~~~~al~~~~~---~~--~~ 202 (1313)
..|+++.|..++.|+-.+.. ..++ ......+..++++|......+ ++++|..++++|.+++.. .. ..
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~-~~~~------~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~ 77 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLN-SLDP------DMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSP 77 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHh-cCCc------HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCC
Confidence 34999999999999988764 1111 234578999999999999999 999999999999999744 11 11
Q ss_pred CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 000742 203 EDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQ 280 (1313)
Q Consensus 203 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~ 280 (1313)
+.......++..++.+|...+.++...+ ..+++..... ..+..+..+...-.+..+.++.+.+.+.+.+++.-..
T Consensus 78 ~~~elr~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~--e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 78 DGSELRLSILRLLANAYLEWDTYESVEK-ALNALRLLES--EYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred cHHHHHHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHH--hCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 2235678889999999999998764443 2233333321 1222233332222333347888888888888887654
No 262
>PRK11906 transcriptional regulator; Provisional
Probab=97.54 E-value=0.0008 Score=76.83 Aligned_cols=126 Identities=19% Similarity=0.122 Sum_probs=104.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhHhhhhc
Q 000742 130 HYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMEL---------DNLEEAKKFLIRGLEICNEEE 200 (1313)
Q Consensus 130 ~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~---------g~~~~A~~~~~~al~~~~~~~ 200 (1313)
....+.|...|.+|+... ...|.++.+|..+|.++... .+..+|....++|+++
T Consensus 271 ~~~~~~Al~lf~ra~~~~------------~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel----- 333 (458)
T PRK11906 271 PESIYRAMTIFDRLQNKS------------DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI----- 333 (458)
T ss_pred HHHHHHHHHHHHHHhhcc------------cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc-----
Confidence 356677888888888220 11567889999999888764 2355677777888777
Q ss_pred cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 000742 201 VSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQ 280 (1313)
Q Consensus 201 ~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~ 280 (1313)
++..+.++..+|.+....++++.|+..|++|+.+.| ..+.+++..|.+....|+.++|++.+++|+++.|
T Consensus 334 ----d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~P------n~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP 403 (458)
T PRK11906 334 ----TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHST------DIASLYYYRALVHFHNEKIEEARICIDKSLQLEP 403 (458)
T ss_pred ----CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCC------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCc
Confidence 445678999999999999999999999999999977 8999999999999999999999999999999987
Q ss_pred Hc
Q 000742 281 SM 282 (1313)
Q Consensus 281 ~~ 282 (1313)
.-
T Consensus 404 ~~ 405 (458)
T PRK11906 404 RR 405 (458)
T ss_pred hh
Confidence 54
No 263
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.0012 Score=71.06 Aligned_cols=122 Identities=21% Similarity=0.245 Sum_probs=98.3
Q ss_pred CCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHH
Q 000742 64 EKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSA 143 (1313)
Q Consensus 64 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~A 143 (1313)
.+..++.|..||.+|..+|++..|...| .+|+++.+++.+ .+..+|.+++... +.....++...++++
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY-~~A~rL~g~n~~------~~~g~aeaL~~~a-----~~~~ta~a~~ll~~a 219 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAY-RNALRLAGDNPE------ILLGLAEALYYQA-----GQQMTAKARALLRQA 219 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHH-HHHHHhCCCCHH------HHHHHHHHHHHhc-----CCcccHHHHHHHHHH
Confidence 3455889999999999999999999999 999999988764 4577788777652 335567899999999
Q ss_pred HHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHH
Q 000742 144 MKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGN 217 (1313)
Q Consensus 144 l~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~ 217 (1313)
+.. +|....+...+|..++..|+|.+|...++..++..+. +.+....+-..++.
T Consensus 220 l~~---------------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~-----~~~rr~~ie~~ia~ 273 (287)
T COG4235 220 LAL---------------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA-----DDPRRSLIERSIAR 273 (287)
T ss_pred Hhc---------------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-----CCchHHHHHHHHHH
Confidence 988 4567899999999999999999999999999998765 34444444444433
No 264
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.54 E-value=0.045 Score=60.30 Aligned_cols=29 Identities=10% Similarity=0.318 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHh-hCHHHHHHHHHHHHHH
Q 000742 381 DSFLVIGESYQKL-RKFNKAIKWYTKSWEM 409 (1313)
Q Consensus 381 ~~~~~lg~~y~~~-g~~~~A~~~~~kal~l 409 (1313)
.+|..|+.+-... |+-.++..|+-++++-
T Consensus 363 s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 363 SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 5667777777555 9999999999988853
No 265
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.042 Score=59.44 Aligned_cols=283 Identities=15% Similarity=0.093 Sum_probs=182.1
Q ss_pred hhHHHHHHHHHHHHHh--c--CcH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHH
Q 000742 6 MQMSEAKRAYRSAKEE--G--NRQ----EEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEV 77 (1313)
Q Consensus 6 ~~~~~A~~~l~~a~~~--~--~~~----~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~ 77 (1313)
.++++++..|...... + ..+ ..-.....+|..|...|++++-.......-...... +....+.....+-..
T Consensus 18 ~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v-~KakaaKlvR~Lvd~ 96 (411)
T KOG1463|consen 18 NQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSV-SKAKAAKLVRSLVDM 96 (411)
T ss_pred chhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHH
Confidence 4567888888877763 1 111 111346789999999999988777666555444332 122223333333333
Q ss_pred HH-HccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCC
Q 000742 78 YL-RLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPAT 156 (1313)
Q Consensus 78 y~-~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~ 156 (1313)
+. .-+....-+..+ ...++.+............-..+...|+.. ++|.+|+......+.-.+++.+..
T Consensus 97 ~~~~~~~~~~~i~l~-~~cIeWA~~ekRtFLRq~Learli~Ly~d~--------~~YteAlaL~~~L~rElKKlDDK~-- 165 (411)
T KOG1463|consen 97 FLKIDDGTGDQIELC-TECIEWAKREKRTFLRQSLEARLIRLYNDT--------KRYTEALALINDLLRELKKLDDKI-- 165 (411)
T ss_pred HccCCCCcchHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHHHHHHHhccccc--
Confidence 33 235566778888 999999887776665666667888899877 999999999999999888888765
Q ss_pred CcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000742 157 SRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDI 236 (1313)
Q Consensus 157 ~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal 236 (1313)
...+++..-..+|+...+..+|...+..|-..+... .-.+...+..-..-|..+....+|.-|..||-+|.
T Consensus 166 -------lLvev~llESK~y~~l~Nl~KakasLTsART~Anai--YcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAf 236 (411)
T KOG1463|consen 166 -------LLVEVHLLESKAYHALRNLPKAKASLTSARTTANAI--YCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAF 236 (411)
T ss_pred -------ceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhccc--ccCHHHHHHHHHhccceeecccccchHHHHHHHHH
Confidence 567788888899999999999999988887665443 12233455555666888888899999999999999
Q ss_pred HHHHHhchhhhHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHHHHHccChhHHHHHHHH--hHHHHHHHHHHHHHH
Q 000742 237 IICKKIEHCQGEAKGYINLGELHYRVQKYDE--AILCYQKALNLAQSMEDEDALASQIDQ--NIETVKKAIEVMDEL 309 (1313)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~--A~~~~~kal~~~~~~~~~~~~~~~~~~--~lg~~~~a~~~~~~a 309 (1313)
+-+...++......++-.+-.+-...+..++ ++-.-+.+++.....-+.....+.++. .+.++..|+..|..-
T Consensus 237 Egf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~e 313 (411)
T KOG1463|consen 237 EGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKE 313 (411)
T ss_pred ccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHH
Confidence 9887776654444443333333344445444 333344444422222222222233332 245555666555543
No 266
>PRK11906 transcriptional regulator; Provisional
Probab=97.53 E-value=0.0013 Score=75.23 Aligned_cols=168 Identities=9% Similarity=-0.003 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHcc---ChHHHHHHHHHHHH---HHHHHhcCHHHHHHHHHHHHHHHHHHhcc-CCcchhhHHHHHHHHHH
Q 000742 70 TCQSLGEVYLRLE---HFKDALIYQVKKHL---ELAKDASDLVEQQRACTQLGRTYYEMFLR-SDDDHYSIRNAKKYFKS 142 (1313)
Q Consensus 70 ~~~~lg~~y~~~g---~~~~A~~~~~~kal---~l~~~~~~~~~~a~a~~~lg~~y~~l~~~-~~~~~~~~~~A~~~~~~ 142 (1313)
.++..|......+ ..+.|+..| .+|+ ++.|.. +.+|..++.+|...... .........+|....++
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf-~ra~~~~~ldp~~------a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~r 329 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIF-DRLQNKSDIQTLK------TECYCLLAECHMSLALHGKSELELAAQKALELLDY 329 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHH-HHHhhcccCCccc------HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 4466676665554 345677788 8888 554433 46788888888876322 22245667778888888
Q ss_pred HHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHc
Q 000742 143 AMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMEL 222 (1313)
Q Consensus 143 Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~ 222 (1313)
|+++ .|..+.++..+|.+....++++.|+..|++|+.+ .|..+.+++..|.+....
T Consensus 330 Avel---------------d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L---------~Pn~A~~~~~~~~~~~~~ 385 (458)
T PRK11906 330 VSDI---------------TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH---------STDIASLYYYRALVHFHN 385 (458)
T ss_pred HHhc---------------CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc---------CCccHHHHHHHHHHHHHc
Confidence 8877 3456889999999999999999999999999999 555789999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHH-HHHHhcCHHHHHHHHHH
Q 000742 223 RMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGE-LHYRVQKYDEAILCYQK 274 (1313)
Q Consensus 223 g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~k 274 (1313)
|+.++|++.+++|+++.|. ........+-. .|+. ...++|+..|-+
T Consensus 386 G~~~~a~~~i~~alrLsP~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 432 (458)
T PRK11906 386 EKIEEARICIDKSLQLEPR-----RRKAVVIKECVDMYVP-NPLKNNIKLYYK 432 (458)
T ss_pred CCHHHHHHHHHHHhccCch-----hhHHHHHHHHHHHHcC-CchhhhHHHHhh
Confidence 9999999999999999772 22222223322 4443 456667766643
No 267
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.52 E-value=0.0083 Score=59.09 Aligned_cols=165 Identities=13% Similarity=0.075 Sum_probs=123.4
Q ss_pred HHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhcc
Q 000742 73 SLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKE 152 (1313)
Q Consensus 73 ~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~ 152 (1313)
.++.....+=+.+.+..-. .+.++++|...+ .+.+|.....+ |++.+|...|++++.-.
T Consensus 61 ~~~~a~~q~ldP~R~~Rea-~~~~~~ApTvqn-------r~rLa~al~el--------Gr~~EA~~hy~qalsG~----- 119 (251)
T COG4700 61 TLLMALQQKLDPERHLREA-TEELAIAPTVQN-------RYRLANALAEL--------GRYHEAVPHYQQALSGI----- 119 (251)
T ss_pred HHHHHHHHhcChhHHHHHH-HHHHhhchhHHH-------HHHHHHHHHHh--------hhhhhhHHHHHHHhccc-----
Confidence 4455555666777777666 777777776654 36778888877 99999999999987531
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000742 153 NPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHI 232 (1313)
Q Consensus 153 ~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~ 232 (1313)
....+..+..++...+..+++..|...+++..+.-+. ...+.....+|.+|...|++++|...|
T Consensus 120 ---------fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa-------~r~pd~~Ll~aR~laa~g~~a~Aesaf 183 (251)
T COG4700 120 ---------FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA-------FRSPDGHLLFARTLAAQGKYADAESAF 183 (251)
T ss_pred ---------cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc-------cCCCCchHHHHHHHHhcCCchhHHHHH
Confidence 1133567888999999999999999999998887433 223345677899999999999999999
Q ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 000742 233 EQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQS 281 (1313)
Q Consensus 233 ~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~ 281 (1313)
+.++..++ -+.+....+..+.++|+..+|..-+....+-..+
T Consensus 184 e~a~~~yp-------g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r 225 (251)
T COG4700 184 EVAISYYP-------GPQARIYYAEMLAKQGRLREANAQYVAVVDTAKR 225 (251)
T ss_pred HHHHHhCC-------CHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 99999876 2344555678888999988888777666554443
No 268
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.51 E-value=0.0012 Score=65.44 Aligned_cols=105 Identities=15% Similarity=0.104 Sum_probs=92.2
Q ss_pred hHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHH
Q 000742 69 PTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQ 148 (1313)
Q Consensus 69 ~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~ 148 (1313)
.-+-.-|.-++..|+|++|..-| ..|+++.|.... ......|.+.|.+...+ +.++.|+....+|+++
T Consensus 96 d~lK~EGN~~F~ngdyeeA~skY-~~Ale~cp~~~~-e~rsIly~Nraaa~iKl--------~k~e~aI~dcsKaiel-- 163 (271)
T KOG4234|consen 96 DSLKKEGNELFKNGDYEEANSKY-QEALESCPSTST-EERSILYSNRAAALIKL--------RKWESAIEDCSKAIEL-- 163 (271)
T ss_pred HHHHHHHHHhhhcccHHHHHHHH-HHHHHhCccccH-HHHHHHHhhhHHHHHHh--------hhHHHHHHHHHhhHhc--
Confidence 34556788899999999999999 999999988765 55677888999999988 9999999999999999
Q ss_pred HhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhh
Q 000742 149 TLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNE 198 (1313)
Q Consensus 149 ~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 198 (1313)
.|.+..++...|.+|.++.+|++|+.-|.+.++..+.
T Consensus 164 -------------~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 164 -------------NPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred -------------CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcc
Confidence 5577788899999999999999999999999998544
No 269
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.51 E-value=0.007 Score=63.36 Aligned_cols=159 Identities=11% Similarity=-0.006 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHH
Q 000742 210 RLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALA 289 (1313)
Q Consensus 210 ~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~ 289 (1313)
.....-|.+|..-|++++|.+...+...+ .+...--.++.++.+.+-|...++++.+++.+.. ...+
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~~~~l-----------E~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~t--LtQL 175 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHLGENL-----------EAAALNVQILLKMHRFDLAEKELKKMQQIDEDAT--LTQL 175 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhccchH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHH--HHHH
Confidence 45556678889999999998887763222 2223334567778888888888888877765321 0111
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742 290 SQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRI 369 (1313)
Q Consensus 290 ~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i 369 (1313)
+..|.++.. | . +-++.+.-+
T Consensus 176 A~awv~la~-----------------------------g------------------------g-------ek~qdAfyi 195 (299)
T KOG3081|consen 176 AQAWVKLAT-----------------------------G------------------------G-------EKIQDAFYI 195 (299)
T ss_pred HHHHHHHhc-----------------------------c------------------------c-------hhhhhHHHH
Confidence 111111110 0 0 112223334
Q ss_pred HHHhCC-chhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000742 370 ASELCD-KGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGY 447 (1313)
Q Consensus 370 ~~~~~~-~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl 447 (1313)
++++.+ .+.........+.++..+|+|++|...++.|+.-. +..+.++.++-.+-...|...++..-+-.-+
T Consensus 196 feE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd------~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 196 FEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD------AKDPETLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred HHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc------CCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 444444 45667788889999999999999999999998543 3557778888888888888777665544433
No 270
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.48 E-value=1.6e-05 Score=65.86 Aligned_cols=59 Identities=31% Similarity=0.358 Sum_probs=31.5
Q ss_pred CcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCCC
Q 000742 918 RLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNS 984 (1313)
Q Consensus 918 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 984 (1313)
+|++|+|++|.|+.. -...|..+++|++|+|++|.|+. .-+.+|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i----~~~~f~~l~~L~~L~l~~N~l~~----i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEI----PPDSFSNLPNLETLDLSNNNLTS----IPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEE----CTTTTTTGTTESEEEETSSSESE----EETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCcc----CHHHHcCCCCCCEeEccCCccCc----cCHHHHcCCCCCCEEeCcCCc
Confidence 455666666655543 22345555566666666665553 112234556666666666664
No 271
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.45 E-value=0.0013 Score=75.77 Aligned_cols=120 Identities=15% Similarity=0.091 Sum_probs=98.7
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 000742 34 IGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACT 113 (1313)
Q Consensus 34 lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~ 113 (1313)
+-.++...+++++|+..+++..+.. .++...++.++...++..+|+..+ +++++..|.. +..+.
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~---------pev~~~LA~v~l~~~~E~~AI~ll-~~aL~~~p~d------~~LL~ 238 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD---------PEVAVLLARVYLLMNEEVEAIRLL-NEALKENPQD------SELLN 238 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC---------CcHHHHHHHHHHhcCcHHHHHHHH-HHHHHhCCCC------HHHHH
Confidence 4455666789999999999876543 346667999999999999999999 9999665544 35567
Q ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000742 114 QLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRG 192 (1313)
Q Consensus 114 ~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~a 192 (1313)
..+..+... ++++.|++..++|..+ .|.....|..||.+|...|++++|+..+..+
T Consensus 239 ~Qa~fLl~k--------~~~~lAL~iAk~av~l---------------sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 239 LQAEFLLSK--------KKYELALEIAKKAVEL---------------SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHhc--------CCHHHHHHHHHHHHHh---------------CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 778888866 9999999999999988 4577899999999999999999999776643
No 272
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.43 E-value=0.0016 Score=74.29 Aligned_cols=69 Identities=17% Similarity=0.119 Sum_probs=63.2
Q ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHH---HHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 000742 204 DDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEA---KGYINLGELHYRVQKYDEAILCYQKALNL 278 (1313)
Q Consensus 204 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~kal~~ 278 (1313)
..+..+.+++++|.+|..+|+|++|+..|++|+++.+ ... .+|+++|.+|..+|++++|+.++++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~P------d~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNP------NPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4567889999999999999999999999999999977 434 56999999999999999999999999997
No 273
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.43 E-value=0.21 Score=60.25 Aligned_cols=164 Identities=12% Similarity=0.071 Sum_probs=109.4
Q ss_pred cCCHHHHHHHHHHHHhHhhhhccCCCchHHH----HHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHHhchhhhHHH
Q 000742 179 LDNLEEAKKFLIRGLEICNEEEVSEDDDGRS----RLHHNLGNVYM----ELRMWDKSREHIEQDIIICKKIEHCQGEAK 250 (1313)
Q Consensus 179 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~----~~~~~lg~~y~----~~g~~~~A~~~~~kal~~~~~~~~~~~~~~ 250 (1313)
.|+-+.++..+.++.+. ..+ ....+ ..|+.....+. .....+.|.+.++...+.+| ..+.
T Consensus 201 ~gdR~~GL~~L~~~~~~-~~i-----~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP------~s~l 268 (468)
T PF10300_consen 201 SGDRELGLRLLWEASKS-ENI-----RSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYP------NSAL 268 (468)
T ss_pred CCcHHHHHHHHHHHhcc-CCc-----chHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCC------CcHH
Confidence 58999999999998662 221 11111 11222222222 23456777777777777765 6777
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCc
Q 000742 251 GYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTS 330 (1313)
Q Consensus 251 ~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~ 330 (1313)
.++..|.++...|+.++|++.|++++....+... +
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Q----l----------------------------------------- 303 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQ----L----------------------------------------- 303 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHh----H-----------------------------------------
Confidence 8889999999999999999999998843322110 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Q 000742 331 QERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMY 410 (1313)
Q Consensus 331 ~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~ 410 (1313)
..-.++.+|+++..+.+|++|..+|.+..+..
T Consensus 304 ------------------------------------------------~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s 335 (468)
T PF10300_consen 304 ------------------------------------------------HHLCYFELAWCHMFQHDWEEAAEYFLRLLKES 335 (468)
T ss_pred ------------------------------------------------HHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Confidence 01456668888888899999988888877532
Q ss_pred HHhCCchhHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHH
Q 000742 411 KSIGNLEGQALAKVNMGNVLDSNGDW-------AGALDAFQEGYRIAVE 452 (1313)
Q Consensus 411 ~~~~~~~~~~~~~~~lg~~y~~~g~~-------~~A~~~~~kAl~i~~~ 452 (1313)
. -..+...|..|.+|...|+. ++|..+|+++-.+..+
T Consensus 336 ~-----WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k 379 (468)
T PF10300_consen 336 K-----WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQK 379 (468)
T ss_pred c-----cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhh
Confidence 2 23445567788888888888 6777777776666554
No 274
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=0.17 Score=54.70 Aligned_cols=220 Identities=15% Similarity=0.066 Sum_probs=141.0
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHH
Q 000742 16 RSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKH 95 (1313)
Q Consensus 16 ~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ka 95 (1313)
.+....+|....++.+ .+|.+....+.--+-.+.++++..-..++.... +-...-+.+....|++.+|-... ++.
T Consensus 55 ~kL~ssDP~~Vmart~-a~gl~~iaa~s~v~~ak~~dqav~dav~y~~ar---Ek~h~~aai~~~~g~~h~a~~~w-dkl 129 (491)
T KOG2610|consen 55 EKLSSSDPEAVMARTF-ALGLVLIAAASNVEFAKKMDQAVIDAVKYGNAR---EKRHAKAAILWGRGKHHEAAIEW-DKL 129 (491)
T ss_pred HHHhcCChHHHHHHHH-HHhhhhhhccchhhHHHHHHHHHHHHHHHhhhH---HhhhhhHHHhhccccccHHHHHH-HHH
Confidence 3444455555555543 455555555544444455555554443332211 22223445566778898888888 888
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHH
Q 000742 96 LELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGML 175 (1313)
Q Consensus 96 l~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~ 175 (1313)
++-+|..- .++..--..+..+ |+.+.-...+++.+.. -+. ..|-+..+...++..
T Consensus 130 L~d~PtDl------la~kfsh~a~fy~--------G~~~~~k~ai~kIip~---wn~--------dlp~~sYv~GmyaFg 184 (491)
T KOG2610|consen 130 LDDYPTDL------LAVKFSHDAHFYN--------GNQIGKKNAIEKIIPK---WNA--------DLPCYSYVHGMYAFG 184 (491)
T ss_pred HHhCchhh------hhhhhhhhHHHhc--------cchhhhhhHHHHhccc---cCC--------CCcHHHHHHHHHHhh
Confidence 88776542 1222223333333 5444444444444322 111 134667778888888
Q ss_pred HHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHH
Q 000742 176 QMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINL 255 (1313)
Q Consensus 176 y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~l 255 (1313)
+...|-|++|.+...+|+++ .+....+....+.++...|++.++.++..+.-..-++ .......-|...
T Consensus 185 L~E~g~y~dAEk~A~ralqi---------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~--s~mlasHNyWH~ 253 (491)
T KOG2610|consen 185 LEECGIYDDAEKQADRALQI---------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ--SWMLASHNYWHT 253 (491)
T ss_pred HHHhccchhHHHHHHhhccC---------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhh--hhHHHhhhhHHH
Confidence 99999999999999999998 4446778889999999999999999998877655442 122345567788
Q ss_pred HHHHHHhcCHHHHHHHHHHHH
Q 000742 256 GELHYRVQKYDEAILCYQKAL 276 (1313)
Q Consensus 256 a~~~~~~g~~~~A~~~~~kal 276 (1313)
|.+|...+.|+.|++.|..-+
T Consensus 254 Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 254 ALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHhhhcccchhHHHHHHHHHH
Confidence 899999999999999998744
No 275
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.0091 Score=62.00 Aligned_cols=180 Identities=10% Similarity=0.054 Sum_probs=128.6
Q ss_pred HHHHHHHHHccChHHHHHHHHHHHHH-------HHHHhcC--------HHHHHHHHHHHHHHHHHHhccCCcchhhHHHH
Q 000742 72 QSLGEVYLRLEHFKDALIYQVKKHLE-------LAKDASD--------LVEQQRACTQLGRTYYEMFLRSDDDHYSIRNA 136 (1313)
Q Consensus 72 ~~lg~~y~~~g~~~~A~~~~~~kal~-------l~~~~~~--------~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A 136 (1313)
..-|.+....|+..+.+.-+ ..... ..+.-.. ......+.+.+..++..+ ++|.-.
T Consensus 126 ~lhAe~~~~lgnpqesLdRl-~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~--------kEy~iS 196 (366)
T KOG2796|consen 126 ILHAELQQYLGNPQESLDRL-HKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGM--------KEYVLS 196 (366)
T ss_pred HHHHHHHHhcCCcHHHHHHH-HHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcc--------hhhhhh
Confidence 34566777788888877655 43332 2222111 112334445556666544 777777
Q ss_pred HHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHH
Q 000742 137 KKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLG 216 (1313)
Q Consensus 137 ~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg 216 (1313)
...+.+.++.. .|..+.....+|.+.++.|+.+.|..+|++..+...++ +.-.....+..+.+
T Consensus 197 ~d~~~~vi~~~--------------~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL---~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 197 VDAYHSVIKYY--------------PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKL---DGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHHhC--------------CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh---hccchhHHHHhhhh
Confidence 77777776631 12445677788999999999999999999887766554 33444566788889
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcc
Q 000742 217 NVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSME 283 (1313)
Q Consensus 217 ~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~ 283 (1313)
.+|.-.++|.+|...|.+.+...+ ..+.+.++.|.+....|+...|++.++.++++.|...
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~------~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDP------RNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hheecccchHHHHHHHhhccccCC------CchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 999999999999999998888765 6778888899999999999999999999988877543
No 276
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.38 E-value=0.0025 Score=61.23 Aligned_cols=113 Identities=19% Similarity=0.160 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHH
Q 000742 29 RWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQ 108 (1313)
Q Consensus 29 ~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~ 108 (1313)
..++.-|...+..|+|++|++.|+......+ ..+....+...+|.+|+..++|++|+..+ ++-+++.|..++..
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP---~g~ya~qAqL~l~yayy~~~~y~~A~a~~-~rFirLhP~hp~vd-- 84 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYP---FGEYAEQAQLDLAYAYYKQGDYEEAIAAY-DRFIRLHPTHPNVD-- 84 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC---CCcccHHHHHHHHHHHHHccCHHHHHHHH-HHHHHhCCCCCCcc--
Confidence 3478899999999999999999998776653 23444688999999999999999999999 99999999887644
Q ss_pred HHHHHHHHHHHHHHhc-------cCCcchhhHHHHHHHHHHHHHHHH
Q 000742 109 QRACTQLGRTYYEMFL-------RSDDDHYSIRNAKKYFKSAMKLAQ 148 (1313)
Q Consensus 109 a~a~~~lg~~y~~l~~-------~~~~~~~~~~~A~~~~~~Al~l~~ 148 (1313)
-+++..|.+++.+.. ....+.+...+|...|++.++.+.
T Consensus 85 -Ya~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP 130 (142)
T PF13512_consen 85 -YAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYP 130 (142)
T ss_pred -HHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCc
Confidence 678999999887733 445555667788888887776643
No 277
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.38 E-value=0.00032 Score=60.58 Aligned_cols=63 Identities=16% Similarity=0.371 Sum_probs=57.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcc
Q 000742 215 LGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSME 283 (1313)
Q Consensus 215 lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~ 283 (1313)
|..+|...++|++|++++++++.+.| .....+...|.+|..+|++++|+..++++++..|+..
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p------~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDP------DDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCc------ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 35789999999999999999999977 7889999999999999999999999999999888543
No 278
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.34 E-value=0.00015 Score=92.41 Aligned_cols=128 Identities=23% Similarity=0.184 Sum_probs=73.7
Q ss_pred CcCEEEecCCCCCHHHHHHHHHHHHhcccCccceEEEccCCC--CCHHHHHHHHhcccCCCCcCEEEecCCCCChhHHHH
Q 000742 859 TVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNR--FGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSY 936 (1313)
Q Consensus 859 ~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~~~~l~~L~Ls~n~--l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 936 (1313)
.++.+.+-+|.+... ......+.+.+|-+..|. +.......|.. ++.|+.||||+|.=...
T Consensus 524 ~~rr~s~~~~~~~~~---------~~~~~~~~L~tLll~~n~~~l~~is~~ff~~----m~~LrVLDLs~~~~l~~---- 586 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEHI---------AGSSENPKLRTLLLQRNSDWLLEISGEFFRS----LPLLRVLDLSGNSSLSK---- 586 (889)
T ss_pred heeEEEEeccchhhc---------cCCCCCCccceEEEeecchhhhhcCHHHHhh----CcceEEEECCCCCccCc----
Confidence 456666666654221 111223346666666665 44444433433 37777777777643333
Q ss_pred HHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCCCCCChhhHHHHHHhhccCCccceeecCCCC
Q 000742 937 LSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLK 1013 (1313)
Q Consensus 937 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~ 1013 (1313)
+|..++.+-+|+.|+|+++.|. .++..|.++..|.+|++..+..+.. ++..+..+++|++|.+....
T Consensus 587 LP~~I~~Li~LryL~L~~t~I~-----~LP~~l~~Lk~L~~Lnl~~~~~l~~-----~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 587 LPSSIGELVHLRYLDLSDTGIS-----HLPSGLGNLKKLIYLNLEVTGRLES-----IPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred CChHHhhhhhhhcccccCCCcc-----ccchHHHHHHhhheecccccccccc-----ccchhhhcccccEEEeeccc
Confidence 6666777777777777777776 5666777777777777776652111 12223346677777765544
No 279
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.34 E-value=0.6 Score=55.27 Aligned_cols=68 Identities=13% Similarity=0.159 Sum_probs=37.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHcCChhHHHHHHHhhHHHHHHhhcCHHHHHHHHHHHHHHHhhh
Q 000742 423 KVNMGNVLDSNGDWAGALDAFQEGYRIA--VEANLPSVQLSALENMHYSHMIRFDNIEEARRLQHEIDKLKESK 494 (1313)
Q Consensus 423 ~~~lg~~y~~~g~~~~A~~~~~kAl~i~--~~~~~~~~~~~al~~L~~~~~~~~~~~~~a~~~~e~~~~l~~s~ 494 (1313)
+..+|+-....|..+.|+. .|+.+. ++. -|+.+.-.+..|+.+..+.++.-.+|.--.++.+.+.+..
T Consensus 1024 FmilAQrql~eg~v~~Al~---Tal~L~DYEd~-lpP~eiySllALaaca~raFGtCSKAfmkLe~~e~l~~a~ 1093 (1189)
T KOG2041|consen 1024 FMILAQRQLFEGRVKDALQ---TALILSDYEDF-LPPAEIYSLLALAACAVRAFGTCSKAFMKLEAFEELDDAE 1093 (1189)
T ss_pred HHHHHHHHHHhchHHHHHH---HHhhhccHhhc-CCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhCCHHH
Confidence 3445555556666666654 344332 222 2334444555666666667777666666666666555433
No 280
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.057 Score=56.87 Aligned_cols=233 Identities=13% Similarity=0.033 Sum_probs=145.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHH
Q 000742 171 NIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAK 250 (1313)
Q Consensus 171 ~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~ 250 (1313)
.+|.-....+++++|+..|.+.+..--.. ........-.+..+++.+|...|++..-.+.....-+...+...+ ....
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~-dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~-k~~K 85 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSK-DEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKP-KITK 85 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCCh-hhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcch-hHHH
Confidence 34555566789999999999987651100 001122345577899999999999987766666555544422111 1112
Q ss_pred HHHHHHHH-HHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 000742 251 GYINLGEL-HYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGT 329 (1313)
Q Consensus 251 ~~~~la~~-~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~ 329 (1313)
+...+-.- -+....++.-+..+...++.+.+....
T Consensus 86 iirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~-------------------------------------------- 121 (421)
T COG5159 86 IIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRK-------------------------------------------- 121 (421)
T ss_pred HHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHH--------------------------------------------
Confidence 22221111 122334444444444444443322111
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 000742 330 SQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEM 409 (1313)
Q Consensus 330 ~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l 409 (1313)
++... .-..++..+...+.|.+|+....-.+.-.++..+.+.....|..-..+|....+..++...+..|-..
T Consensus 122 ------fLr~~-Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~ 194 (421)
T COG5159 122 ------FLRLE-LECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTL 194 (421)
T ss_pred ------HHHHH-HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHH
Confidence 00000 01234445556677888887777777777888889999999999999999999999999999988888
Q ss_pred HHHhCCchhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh
Q 000742 410 YKSIGNLEGQ-ALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLP 456 (1313)
Q Consensus 410 ~~~~~~~~~~-~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~ 456 (1313)
+....-++.. +..=..-|.......+|..|..||-+|++=+-.....
T Consensus 195 Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d 242 (421)
T COG5159 195 ANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMD 242 (421)
T ss_pred hhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccch
Confidence 7766655443 3333344566677889999999999999866554443
No 281
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.12 Score=56.10 Aligned_cols=260 Identities=17% Similarity=0.144 Sum_probs=160.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhHhhhhccC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHH
Q 000742 172 IGMLQMELDNLEEAKKFLIRGLEICNEEEVS-EDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAK 250 (1313)
Q Consensus 172 la~~y~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~ 250 (1313)
.+.......++++++..|.+.+...+..... ......-....++|..|...|++++-.......-......
T Consensus 10 ~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v-------- 81 (411)
T KOG1463|consen 10 RAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSV-------- 81 (411)
T ss_pred HHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHh--------
Confidence 3444445567788888888888752221000 0112234567889999999999988776665554433311
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCc
Q 000742 251 GYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTS 330 (1313)
Q Consensus 251 ~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~ 330 (1313)
+ -.+|.+..+..++......+..... +.-..+.++.-.+
T Consensus 82 -----~--------KakaaKlvR~Lvd~~~~~~~~~~~~------i~l~~~cIeWA~~---------------------- 120 (411)
T KOG1463|consen 82 -----S--------KAKAAKLVRSLVDMFLKIDDGTGDQ------IELCTECIEWAKR---------------------- 120 (411)
T ss_pred -----h--------hHHHHHHHHHHHHHHccCCCCcchH------HHHHHHHHHHHHH----------------------
Confidence 1 1233344444444444443322211 1111111111000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Q 000742 331 QERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMY 410 (1313)
Q Consensus 331 ~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~ 410 (1313)
+.+.++.+. .-.+++..|...+.|.+|+........-.+++.+.....+++..-..+|+...+..+|...+.-|-...
T Consensus 121 -ekRtFLRq~-Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~A 198 (411)
T KOG1463|consen 121 -EKRTFLRQS-LEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTA 198 (411)
T ss_pred -HhHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhh
Confidence 011111111 134567778888999999999998888888999999999999999999999999999999999888777
Q ss_pred HHhCCchhHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhHHHHHHhhcCHHHHHHH
Q 000742 411 KSIGNLEGQALA-KVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMIRFDNIEEARRL 483 (1313)
Q Consensus 411 ~~~~~~~~~~~~-~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~~~~~~al~~L~~~~~~~~~~~~~a~~~ 483 (1313)
..+.-+|..... =..=|..+....+|+.|..||-+|++=+...+++.....++..|-.+. ...+..++...+
T Consensus 199 naiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcK-IMln~~ddv~~l 271 (411)
T KOG1463|consen 199 NAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCK-IMLNLPDDVAAL 271 (411)
T ss_pred cccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHH-HHhcCHHHHHHH
Confidence 766655554333 344566677779999999999999998888777644444554444322 233444444443
No 282
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.31 E-value=0.041 Score=67.91 Aligned_cols=155 Identities=18% Similarity=0.175 Sum_probs=112.2
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhH
Q 000742 84 FKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLK 163 (1313)
Q Consensus 84 ~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p 163 (1313)
..+|.+++ +.+.+.. + ..+...+|.+|..- ..+...+.++|+.+|+.+..-+.+....
T Consensus 228 ~~~a~~~~-~~~a~~g----~----~~a~~~~g~~y~~G---~~g~~~d~e~a~~~l~~aa~~~~~~a~~---------- 285 (552)
T KOG1550|consen 228 LSEAFKYY-REAAKLG----H----SEAQYALGICYLAG---TYGVTQDLESAIEYLKLAAESFKKAATK---------- 285 (552)
T ss_pred hhHHHHHH-HHHHhhc----c----hHHHHHHHHHHhhc---cccccccHHHHHHHHHHHHHHHHHHHhh----------
Confidence 45677777 5554432 2 34667888888743 1335578999999999998832111110
Q ss_pred HHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcC---CHHHHHHHHHHH
Q 000742 164 EYIDAHNNIGMLQMELD-----NLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELR---MWDKSREHIEQD 235 (1313)
Q Consensus 164 ~~~~~~~~la~~y~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g---~~~~A~~~~~ka 235 (1313)
....+.+.+|.+|.... +++.|+.+|.+|-+. + ...+.+.+|.+|..-. ++.+|.++|..|
T Consensus 286 ~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-------g----~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~A 354 (552)
T KOG1550|consen 286 GLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL-------G----NPDAQYLLGVLYETGTKERDYRRAFEYYSLA 354 (552)
T ss_pred cCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc-------C----CchHHHHHHHHHHcCCccccHHHHHHHHHHH
Confidence 12347788999998843 788899999999776 2 2347788898888765 678999999999
Q ss_pred HHHHHHhchhhhHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHH
Q 000742 236 IIICKKIEHCQGEAKGYINLGELHYR----VQKYDEAILCYQKALNLA 279 (1313)
Q Consensus 236 l~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~kal~~~ 279 (1313)
... ....+++.+|.+|.. ..+.+.|..+|++|.+..
T Consensus 355 a~~--------G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 355 AKA--------GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHc--------CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 876 778899999998874 357899999999998765
No 283
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.29 E-value=0.00016 Score=92.21 Aligned_cols=207 Identities=18% Similarity=0.189 Sum_probs=97.6
Q ss_pred CcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCC--CCHHHHHHHHHHHhcCCCccEEEeCCCCCCChhhHHHHH
Q 000742 918 RLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCS--ITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLL 995 (1313)
Q Consensus 918 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~--i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~ 995 (1313)
..+.+.+-+|.+... +. -..|+.|++|-+..|. +.. .....|..++.|+.||||+|. .+..+|
T Consensus 524 ~~rr~s~~~~~~~~~-----~~-~~~~~~L~tLll~~n~~~l~~----is~~ff~~m~~LrVLDLs~~~-----~l~~LP 588 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEHI-----AG-SSENPKLRTLLLQRNSDWLLE----ISGEFFRSLPLLRVLDLSGNS-----SLSKLP 588 (889)
T ss_pred heeEEEEeccchhhc-----cC-CCCCCccceEEEeecchhhhh----cCHHHHhhCcceEEEECCCCC-----ccCcCC
Confidence 455555555544321 11 1234456666666664 221 111224556667777776655 133455
Q ss_pred HhhccCCccceeecCCCCCChHHHHHHHHHhhcCCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCCChhHH
Q 000742 996 VKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCI 1075 (1313)
Q Consensus 996 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 1075 (1313)
..++.+-+|++|+|+++.+. ..|..+..+. .|.+|++..+..-..- ..+...+++|++|.+-.-.......
T Consensus 589 ~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk---~L~~Lnl~~~~~l~~~-----~~i~~~L~~Lr~L~l~~s~~~~~~~ 659 (889)
T KOG4658|consen 589 SSIGELVHLRYLDLSDTGIS-HLPSGLGNLK---KLIYLNLEVTGRLESI-----PGILLELQSLRVLRLPRSALSNDKL 659 (889)
T ss_pred hHHhhhhhhhcccccCCCcc-ccchHHHHHH---hhheeccccccccccc-----cchhhhcccccEEEeeccccccchh
Confidence 56666666667777766665 2344444443 3666666655421110 1112223567777765554221111
Q ss_pred HHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhcCCCCceeEEEeecCCCCHHHHHHHHHHhhcCCCccEEEccCCCC
Q 000742 1076 HKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNAS 1155 (1313)
Q Consensus 1076 ~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~N~i 1155 (1313)
.-..+..+.+|+.|....... .....+..+..- ....+.+.+.++... ..+..+..+.+|+.|.+.++.+
T Consensus 660 --~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L-~~~~~~l~~~~~~~~-----~~~~~~~~l~~L~~L~i~~~~~ 729 (889)
T KOG4658|consen 660 --LLKELENLEHLENLSITISSV--LLLEDLLGMTRL-RSLLQSLSIEGCSKR-----TLISSLGSLGNLEELSILDCGI 729 (889)
T ss_pred --hHHhhhcccchhhheeecchh--HhHhhhhhhHHH-HHHhHhhhhcccccc-----eeecccccccCcceEEEEcCCC
Confidence 122334555566555533332 111111111100 001223333222221 2445567777888888888887
Q ss_pred Chh
Q 000742 1156 KEL 1158 (1313)
Q Consensus 1156 ~~~ 1158 (1313)
.+.
T Consensus 730 ~e~ 732 (889)
T KOG4658|consen 730 SEI 732 (889)
T ss_pred chh
Confidence 655
No 284
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.26 E-value=0.044 Score=54.21 Aligned_cols=162 Identities=9% Similarity=0.053 Sum_probs=113.2
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 000742 35 GDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQ 114 (1313)
Q Consensus 35 g~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~ 114 (1313)
+....+.=+.+.+++...+.+++.+. ..-.+.+|....+.|++.+|..+| ++++.-.-. .| +..+..
T Consensus 63 ~~a~~q~ldP~R~~Rea~~~~~~ApT-------vqnr~rLa~al~elGr~~EA~~hy-~qalsG~fA-~d----~a~lLg 129 (251)
T COG4700 63 LMALQQKLDPERHLREATEELAIAPT-------VQNRYRLANALAELGRYHEAVPHY-QQALSGIFA-HD----AAMLLG 129 (251)
T ss_pred HHHHHHhcChhHHHHHHHHHHhhchh-------HHHHHHHHHHHHHhhhhhhhHHHH-HHHhccccC-CC----HHHHHH
Confidence 33344444555555555555555433 345678999999999999999999 998863221 22 234667
Q ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000742 115 LGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLE 194 (1313)
Q Consensus 115 lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 194 (1313)
+++....+ +++..|...+++..+.-... ..+.....+|.+|..+|++.+|...|+.++.
T Consensus 130 lA~Aqfa~--------~~~A~a~~tLe~l~e~~pa~-------------r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 130 LAQAQFAI--------QEFAAAQQTLEDLMEYNPAF-------------RSPDGHLLFARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHhh--------ccHHHHHHHHHHHhhcCCcc-------------CCCCchHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 77777776 77888877777766552211 1245678889999999999999999999999
Q ss_pred HhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742 195 ICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICK 240 (1313)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~ 240 (1313)
.++. ..+....+.....+|+.++|..-+....+...
T Consensus 189 ~ypg----------~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~ 224 (251)
T COG4700 189 YYPG----------PQARIYYAEMLAKQGRLREANAQYVAVVDTAK 224 (251)
T ss_pred hCCC----------HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 8654 23344567888899999988887766655544
No 285
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=97.25 E-value=0.00012 Score=81.93 Aligned_cols=115 Identities=18% Similarity=0.097 Sum_probs=63.2
Q ss_pred ceEEEccCCCCCHHHHHHHHhc--ccCCCCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHH
Q 000742 891 DLTLDLHCNRFGPTTLFQICEC--PVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADA 968 (1313)
Q Consensus 891 l~~L~Ls~n~l~~~~~~~l~~~--l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 968 (1313)
+..++|--|.+.......+... ...++.+++++|+.|.+.+.+...|+.- .--|+++.|++++.++..+..-
T Consensus 137 l~~l~l~~cml~pdf~~kl~hs~~~rpnpr~r~~dls~npi~dkvpihl~~p------~~pl~lr~c~lsskfis~l~~q 210 (553)
T KOG4242|consen 137 LPPLGLLPCMLLPDFGQKLRHSTRARPNPRARQHDLSPNPIGDKVPIHLPQP------GNPLSLRVCELSSKFISKLLIQ 210 (553)
T ss_pred CCccCchhccCchhhcccccchhhcCCcchhhhhccCCCcccccCCccccCC------CCccchhhhhhhhhHHHHhhhh
Confidence 4566666666655443333322 2235678899999999888744333321 1127788888888776665511
Q ss_pred HhcCCCccEEEeCCCCCCChhhHHHHHHhhccCCccceeecCCCCC
Q 000742 969 LGAESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKL 1014 (1313)
Q Consensus 969 l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l 1014 (1313)
..-..+++++|+.|.. . +.+..+.........++.++.+...+
T Consensus 211 -sg~~~lteldls~n~~-K-ddip~~~n~~a~~~vl~~ld~s~tgi 253 (553)
T KOG4242|consen 211 -SGRLWLTELDLSTNGG-K-DDIPRTLNKKAGTLVLFKLDRSTTGI 253 (553)
T ss_pred -hccccccccccccCCC-C-ccchhHHHHhhhhhhhhccccccccc
Confidence 1124467777777762 2 22233333333444555555555443
No 286
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.22 E-value=0.00099 Score=57.49 Aligned_cols=60 Identities=20% Similarity=0.368 Sum_probs=54.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742 172 IGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICK 240 (1313)
Q Consensus 172 la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~ 240 (1313)
|..+|...++|++|++++++++.+ .|.....+..+|.+|..+|++++|+..++++++..+
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~---------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL---------DPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh---------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 356789999999999999999999 444678999999999999999999999999998876
No 287
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.20 E-value=1.1 Score=55.56 Aligned_cols=75 Identities=11% Similarity=0.015 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHH
Q 000742 29 RWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQ 108 (1313)
Q Consensus 29 ~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~ 108 (1313)
..|..+|.+..+.|...+|++.|-+| ++ ...|...-.+..+.|+|++-+.|+ ..|-+..+...-..+.
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika--------dD---ps~y~eVi~~a~~~~~~edLv~yL-~MaRkk~~E~~id~eL 1172 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA--------DD---PSNYLEVIDVASRTGKYEDLVKYL-LMARKKVREPYIDSEL 1172 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc--------CC---cHHHHHHHHHHHhcCcHHHHHHHH-HHHHHhhcCccchHHH
Confidence 34778888888888888888888765 22 356777777778888898888888 7776655544333333
Q ss_pred HHHHHHH
Q 000742 109 QRACTQL 115 (1313)
Q Consensus 109 a~a~~~l 115 (1313)
..+|...
T Consensus 1173 i~AyAkt 1179 (1666)
T KOG0985|consen 1173 IFAYAKT 1179 (1666)
T ss_pred HHHHHHh
Confidence 4444433
No 288
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.17 E-value=0.038 Score=50.28 Aligned_cols=125 Identities=11% Similarity=0.016 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHH
Q 000742 108 QQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKK 187 (1313)
Q Consensus 108 ~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~ 187 (1313)
.+.+|..|+..-.++ ..|.|++|..-+++|+++.+.+...... .+.--.+..+..|+..+..+|+|++++.
T Consensus 6 Va~aY~aLs~ae~ql------~~g~~~eAa~s~r~AM~~srtiP~eEaF---Dh~GFDA~chA~Ls~A~~~Lgry~e~L~ 76 (144)
T PF12968_consen 6 VAMAYMALSDAERQL------QDGAYEEAAASCRKAMEVSRTIPAEEAF---DHDGFDAFCHAGLSGALAGLGRYDECLQ 76 (144)
T ss_dssp HHHHHHHHHHHHHHH------HHT-HHHHHHHHHHHHHHHTTS-TTS------HHHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHHHH------HhhhHHHHHHHHHHHHHHhccCChHhhc---ccccHHHHHHHHHHHHHHhhccHHHHHH
Confidence 456677777766666 4588999999999999998877554322 1223456788889999999999999999
Q ss_pred HHHHHHhHhhhhcc--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000742 188 FLIRGLEICNEEEV--SEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKK 241 (1313)
Q Consensus 188 ~~~~al~~~~~~~~--~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~ 241 (1313)
...+++..+..-.. .+.-.....+.++.|..+...|..++|+..|+.+-++...
T Consensus 77 sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaE 132 (144)
T PF12968_consen 77 SADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAE 132 (144)
T ss_dssp HHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 99999998765311 1223345667788899999999999999999999887654
No 289
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.16 E-value=0.00071 Score=57.44 Aligned_cols=55 Identities=16% Similarity=0.265 Sum_probs=37.5
Q ss_pred HHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742 177 MELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICK 240 (1313)
Q Consensus 177 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~ 240 (1313)
...|++++|+..|++++...+. ...++..+|.+|...|++++|...+++++...+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD---------NPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT---------SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hhccCHHHHHHHHHHHHHHCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 3457777777777777776332 456667777777777777777777777766654
No 290
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.15 E-value=0.026 Score=59.32 Aligned_cols=93 Identities=13% Similarity=0.068 Sum_probs=48.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhchhhhH
Q 000742 173 GMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYME----LRMWDKSREHIEQDIIICKKIEHCQGE 248 (1313)
Q Consensus 173 a~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~----~g~~~~A~~~~~kal~~~~~~~~~~~~ 248 (1313)
-.++.++.+++-|.+.++++.++.++ .++..||..|.. .+++.+|.-+|++.-+.. +..
T Consensus 144 VqI~lk~~r~d~A~~~lk~mq~ided-----------~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~------~~T 206 (299)
T KOG3081|consen 144 VQILLKMHRFDLAEKELKKMQQIDED-----------ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT------PPT 206 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccchH-----------HHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc------CCC
Confidence 34455555666666666666555322 122333333332 234455555554443322 245
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc
Q 000742 249 AKGYINLGELHYRVQKYDEAILCYQKALNLAQSM 282 (1313)
Q Consensus 249 ~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~ 282 (1313)
.......|.++..+|+|++|...++.|+.-....
T Consensus 207 ~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d 240 (299)
T KOG3081|consen 207 PLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD 240 (299)
T ss_pred hHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC
Confidence 5566666666666666666666666666554433
No 291
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.13 Score=59.85 Aligned_cols=255 Identities=13% Similarity=0.085 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHH
Q 000742 9 SEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDAL 88 (1313)
Q Consensus 9 ~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~ 88 (1313)
+...+.+....+..|+. +-+....+..+...|+.+.|+.++..+++...+ .-..-.++.+|.++..+.+|.+|.
T Consensus 250 ~~~~~~Ll~~~~~~p~g--a~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~k----Q~~~l~~fE~aw~~v~~~~~~~aa 323 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKG--ALWLLMEARILSIKGNSEAAIDMESLSIPIRMK----QVKSLMVFERAWLSVGQHQYSRAA 323 (546)
T ss_pred HHHHHHhHHHHHhCCCC--ccHHHHHHHHHHHcccHHHHHHHHHhcccHHHH----HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555556666666664 344778888999999999999999988873211 122567889999999999999999
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHH-HHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHH-
Q 000742 89 IYQVKKHLELAKDASDLVEQQRACTQL-GRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYI- 166 (1313)
Q Consensus 89 ~~~~~kal~l~~~~~~~~~~a~a~~~l-g~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~- 166 (1313)
.++ ....+... + ..+ .|..+ |-+|..-.+.-....++-++|..+++.+.++....+...|..+ +....+
T Consensus 324 d~~-~~L~desd----W-S~a-~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~--f~~RKve 394 (546)
T KOG3783|consen 324 DSF-DLLRDESD----W-SHA-FYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEK--FIVRKVE 394 (546)
T ss_pred hHH-HHHHhhhh----h-hHH-HHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhH--HHHHHHH
Confidence 988 65554432 1 111 12223 3333211000011124556666666665555444222111100 000001
Q ss_pred ---------------HHHHHHHHHHHHc--CCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHH
Q 000742 167 ---------------DAHNNIGMLQMEL--DNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSR 229 (1313)
Q Consensus 167 ---------------~~~~~la~~y~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~ 229 (1313)
.-++.++.++..- ...++.+ -+...+ ..++. ++.....--+..+|.++..+|+...|.
T Consensus 395 rf~~~~~~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~-~~~~~---~d~Dd~~lk~lL~g~~lR~Lg~~~~a~ 469 (546)
T KOG3783|consen 395 RFVKRGPLNASILLASPYYELAYFWNGFSRMSKNELE-KMRAEL-ENPKI---DDSDDEGLKYLLKGVILRNLGDSEVAP 469 (546)
T ss_pred HHhccccccccccccchHHHHHHHHhhcccCChhhHH-HHHHHH-hccCC---CCchHHHHHHHHHHHHHHHcCCHHHHH
Confidence 1123333333221 1222222 111111 11221 345556677888999999999999999
Q ss_pred HHHHHHHHHHH-HhchhhhHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHcc
Q 000742 230 EHIEQDIIICK-KIEHCQGEAKGYINLGELHYRVQK-YDEAILCYQKALNLAQSME 283 (1313)
Q Consensus 230 ~~~~kal~~~~-~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~kal~~~~~~~ 283 (1313)
.+|+.+++... ...+....+.++|.+|.+|+.++. ..+|.+++.+|.+...+..
T Consensus 470 ~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~ 525 (546)
T KOG3783|consen 470 KCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYE 525 (546)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccc
Confidence 99999887633 335677789999999999999999 9999999999988775443
No 292
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.12 E-value=0.00042 Score=58.86 Aligned_cols=57 Identities=16% Similarity=0.197 Sum_probs=51.2
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc
Q 000742 220 MELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSM 282 (1313)
Q Consensus 220 ~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~ 282 (1313)
...|++++|++.|++++...| ....+++.+|.+|...|++++|...+++++...|+.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNP------DNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTT------TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred hhccCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 578999999999999999876 788899999999999999999999999999887764
No 293
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.11 E-value=0.012 Score=61.23 Aligned_cols=143 Identities=11% Similarity=0.137 Sum_probs=121.4
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742 161 FLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICK 240 (1313)
Q Consensus 161 ~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~ 240 (1313)
|......+.+.++.++...|+|.-.+..+.+.++.. ++........+|.+-.+.|+.+.|..||+..-+...
T Consensus 172 W~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~--------~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~ 243 (366)
T KOG2796|consen 172 WRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYY--------PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ 243 (366)
T ss_pred HHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhC--------CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh
Confidence 455667788889999999999999999999999864 233556778899999999999999999998887777
Q ss_pred HhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000742 241 KIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKK 311 (1313)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~ 311 (1313)
+.+.......+..+.+.+|.-.++|..|...|.+.+..+++........+.+...+|+...|++.++.+..
T Consensus 244 kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 244 KLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred hhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77777778888999999999999999999999999998887766666667788889999999998887764
No 294
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.08 E-value=0.00016 Score=67.37 Aligned_cols=85 Identities=21% Similarity=0.222 Sum_probs=39.0
Q ss_pred eeEEEeecCCCCHHHHHHHHHHhhcCCCccEEEccCCCCChhhhhhh--cccccccCCcccccccccccccccccccccc
Q 000742 1117 LKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASKELTLQQN--LSSVNSENLQPALKTSDCVSKEVDTDQHGLF 1194 (1313)
Q Consensus 1117 L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~~--l~~l~~~~l~~n~~~~~~~~~~~~~~~~~~~ 1194 (1313)
+..|+|+.|+|.. +......+.....|+..+|++|.+.+..-++. +.+++.++|.+|.++.+|+
T Consensus 29 ~h~ldLssc~lm~--i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPe------------ 94 (177)
T KOG4579|consen 29 LHFLDLSSCQLMY--IADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPE------------ 94 (177)
T ss_pred hhhcccccchhhH--HHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchH------------
Confidence 4445555555541 11122333444455555666665554422221 1123333333333333331
Q ss_pred cccCCCCcccccccCCccchhh
Q 000742 1195 AMNTDCNDLEVADSEDDKIRVE 1216 (1313)
Q Consensus 1195 ~~~~~l~~L~~L~Ls~n~l~~~ 1216 (1313)
.+..++.|+.|+++.|.+..+
T Consensus 95 -E~Aam~aLr~lNl~~N~l~~~ 115 (177)
T KOG4579|consen 95 -ELAAMPALRSLNLRFNPLNAE 115 (177)
T ss_pred -HHhhhHHhhhcccccCccccc
Confidence 135566667777777766544
No 295
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.08 E-value=0.054 Score=49.32 Aligned_cols=105 Identities=10% Similarity=0.129 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCch------hhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCch-hH--
Q 000742 349 KSSMIFAWLKHCEYAKRKKRIASELCDKG------KLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLE-GQ-- 419 (1313)
Q Consensus 349 ~~~~~~~~~~A~~~~~~a~~i~~~~~~~~------~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~-~~-- 419 (1313)
.....+.|+.|..-+.+++.+.+.+.... ..+..|..|+.++..+|+|++++..-.+++..+..-+... +.
T Consensus 18 ~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGk 97 (144)
T PF12968_consen 18 RQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGK 97 (144)
T ss_dssp HHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccch
Confidence 33456788999999999999988765432 3578889999999999999999999999999988665522 22
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 000742 420 --ALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEA 453 (1313)
Q Consensus 420 --~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~ 453 (1313)
..+.++.|.++...|+.++|+..|++|-++..+.
T Consensus 98 lWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaER 133 (144)
T PF12968_consen 98 LWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAER 133 (144)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999999987653
No 296
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.06 E-value=0.35 Score=54.18 Aligned_cols=93 Identities=11% Similarity=0.135 Sum_probs=72.4
Q ss_pred HHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHH-h-------chhhh
Q 000742 177 MELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELR-MWDKSREHIEQDIIICKK-I-------EHCQG 247 (1313)
Q Consensus 177 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g-~~~~A~~~~~kal~~~~~-~-------~~~~~ 247 (1313)
..+|+++.|..++.|+-...... ........+..+++.|.-....+ +++.|...+++|+++.+. . +....
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~-~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSL-DPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcC-CcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 45799999999999998775321 12334567889999999999999 999999999999999754 1 11245
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHH
Q 000742 248 EAKGYINLGELHYRVQKYDEAIL 270 (1313)
Q Consensus 248 ~~~~~~~la~~~~~~g~~~~A~~ 270 (1313)
...++..++.+|...+.++...+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~k 105 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEK 105 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHH
Confidence 67789999999999888765444
No 297
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.04 E-value=0.00067 Score=67.90 Aligned_cols=87 Identities=23% Similarity=0.273 Sum_probs=64.6
Q ss_pred CcccEEEccCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhcCCCCceeEEEeecCCCCHHHHHHHHH
Q 000742 1058 QESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIK 1137 (1313)
Q Consensus 1058 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~ 1137 (1313)
-....+||++|.|... ..|..++.|.+|.|++|.|+...+ .|..++. +|..|.|.+|+|...|- ..
T Consensus 42 d~~d~iDLtdNdl~~l------~~lp~l~rL~tLll~nNrIt~I~p-~L~~~~p----~l~~L~LtnNsi~~l~d---l~ 107 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL------DNLPHLPRLHTLLLNNNRITRIDP-DLDTFLP----NLKTLILTNNSIQELGD---LD 107 (233)
T ss_pred cccceecccccchhhc------ccCCCccccceEEecCCcceeecc-chhhhcc----ccceEEecCcchhhhhh---cc
Confidence 3567788888887554 246678889999999999885443 3445443 48999999999876542 24
Q ss_pred HhhcCCCccEEEccCCCCChh
Q 000742 1138 ALSENDTLEELNLADNASKEL 1158 (1313)
Q Consensus 1138 ~l~~~~~L~~L~Ls~N~i~~~ 1158 (1313)
-+..|++|+.|.+-+|.+++.
T Consensus 108 pLa~~p~L~~Ltll~Npv~~k 128 (233)
T KOG1644|consen 108 PLASCPKLEYLTLLGNPVEHK 128 (233)
T ss_pred hhccCCccceeeecCCchhcc
Confidence 577889999999999998876
No 298
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.01 E-value=0.00028 Score=70.51 Aligned_cols=80 Identities=25% Similarity=0.161 Sum_probs=37.8
Q ss_pred eEEEccCCCCCHHHHHHHHhcccCCCCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhc
Q 000742 892 LTLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGA 971 (1313)
Q Consensus 892 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 971 (1313)
..+||++|.+..... +..+++|.+|.|++|+|+..+ +..-...++|.+|.|.+|+|...+- + .-+..
T Consensus 45 d~iDLtdNdl~~l~~------lp~l~rL~tLll~nNrIt~I~----p~L~~~~p~l~~L~LtnNsi~~l~d--l-~pLa~ 111 (233)
T KOG1644|consen 45 DAIDLTDNDLRKLDN------LPHLPRLHTLLLNNNRITRID----PDLDTFLPNLKTLILTNNSIQELGD--L-DPLAS 111 (233)
T ss_pred ceecccccchhhccc------CCCccccceEEecCCcceeec----cchhhhccccceEEecCcchhhhhh--c-chhcc
Confidence 455666665543332 223355666666666665431 1111234455666666665543211 1 11334
Q ss_pred CCCccEEEeCCCC
Q 000742 972 ESTLAQLCIGYNS 984 (1313)
Q Consensus 972 ~~~L~~L~Ls~n~ 984 (1313)
|+.|++|.+-+|+
T Consensus 112 ~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 112 CPKLEYLTLLGNP 124 (233)
T ss_pred CCccceeeecCCc
Confidence 5555555555555
No 299
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=96.98 E-value=0.0083 Score=54.54 Aligned_cols=79 Identities=22% Similarity=0.256 Sum_probs=67.3
Q ss_pred HHhhCHHHHHHHHHHHHHHHHHhCCch---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhH
Q 000742 391 QKLRKFNKAIKWYTKSWEMYKSIGNLE---GQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMH 467 (1313)
Q Consensus 391 ~~~g~~~~A~~~~~kal~l~~~~~~~~---~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~~~~~~al~~L~ 467 (1313)
.+.|+|.+|++.+.+.++......... ....+..++|.++...|++++|+..+++|++++++.++......++..+.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~~ 88 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWLA 88 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 568999999999999999887666544 55677899999999999999999999999999999999887777776666
Q ss_pred HH
Q 000742 468 YS 469 (1313)
Q Consensus 468 ~~ 469 (1313)
.+
T Consensus 89 ~l 90 (94)
T PF12862_consen 89 NL 90 (94)
T ss_pred HH
Confidence 54
No 300
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.98 E-value=0.014 Score=59.91 Aligned_cols=128 Identities=16% Similarity=0.189 Sum_probs=96.2
Q ss_pred hHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHH
Q 000742 7 QMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKD 86 (1313)
Q Consensus 7 ~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~ 86 (1313)
++++-..-++.+...........++..+|..|...|++++|++.|.++.+... ...+...++..+..+....+++..
T Consensus 15 ~~~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~---~~~~~id~~l~~irv~i~~~d~~~ 91 (177)
T PF10602_consen 15 ELEKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCT---SPGHKIDMCLNVIRVAIFFGDWSH 91 (177)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC---CHHHHHHHHHHHHHHHHHhCCHHH
Confidence 33444444455554445555567799999999999999999999999887652 345568889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHH
Q 000742 87 ALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKL 146 (1313)
Q Consensus 87 A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l 146 (1313)
+..++ .++-.+....++.....+....-|..+... ++|..|.+.|-.+..-
T Consensus 92 v~~~i-~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~--------r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 92 VEKYI-EKAESLIEKGGDWERRNRLKVYEGLANLAQ--------RDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHH-HHHHHHHhccchHHHHHHHHHHHHHHHHHh--------chHHHHHHHHHccCcC
Confidence 99999 999999888777655555444555555544 8888888888766543
No 301
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.95 E-value=0.67 Score=57.30 Aligned_cols=241 Identities=14% Similarity=0.077 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchh
Q 000742 166 IDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHC 245 (1313)
Q Consensus 166 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~ 245 (1313)
+.+|..+|.+..+.|...+|++.|-+| +++ ..|...-.+..+.|.|++-++|+..|-+..++..-.
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika----------dDp----s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id 1169 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA----------DDP----SNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID 1169 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc----------CCc----HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch
Confidence 468999999999999999999988876 222 356677778888899999999888876655432111
Q ss_pred hhHHHHH---------------------HHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHH
Q 000742 246 QGEAKGY---------------------INLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIE 304 (1313)
Q Consensus 246 ~~~~~~~---------------------~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~ 304 (1313)
.....+| ...|.-.+..|.|+.|.-.|...-. +..++..+..+|.+.-|..
T Consensus 1170 ~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN--------~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1170 SELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSN--------FAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred HHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhh--------HHHHHHHHHHHHHHHHHHH
Confidence 1111121 2233334444555555444433222 2233445566677666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Q 000742 305 VMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQ--------QNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDK 376 (1313)
Q Consensus 305 ~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~--------~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~ 376 (1313)
.-.++-. .+.+.....+--+.++- .+.+ .+..+..+.+.|...|-|++-+..++.++.+.+.-.
T Consensus 1242 ~aRKAns-----~ktWK~VcfaCvd~~EF-rlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHM-- 1313 (1666)
T KOG0985|consen 1242 AARKANS-----TKTWKEVCFACVDKEEF-RLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHM-- 1313 (1666)
T ss_pred Hhhhccc-----hhHHHHHHHHHhchhhh-hHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHH--
Confidence 5544421 01111111111111110 0111 134577888888888999999988888887765543
Q ss_pred hhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH--HHhCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 000742 377 GKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMY--KSIGNLEGQALAKVNMGNVLDSNGDWAGALD 441 (1313)
Q Consensus 377 ~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~--~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~ 441 (1313)
..+..+|..|.+- ++++-.++++--+.-. ++.-..-+++..|..+-..|.+-..|+.|.-
T Consensus 1314 ----gmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~ 1375 (1666)
T KOG0985|consen 1314 ----GMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAAL 1375 (1666)
T ss_pred ----HHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 5667777777543 4566665554433211 1111122445567777777777777776654
No 302
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.93 E-value=0.0021 Score=46.39 Aligned_cols=33 Identities=21% Similarity=0.514 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q 000742 422 AKVNMGNVLDSNGDWAGALDAFQEGYRIAVEAN 454 (1313)
Q Consensus 422 ~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~ 454 (1313)
++.+||.+|..+|+|++|+.+|++++.+..+.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~ 33 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPE 33 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 356677777777777777777777776665544
No 303
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.91 E-value=1.9 Score=53.27 Aligned_cols=90 Identities=19% Similarity=0.029 Sum_probs=72.8
Q ss_pred chhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccC
Q 000742 4 DEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEH 83 (1313)
Q Consensus 4 ~~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 83 (1313)
+.+++.+|.+...+..+..|...-|.+ .-|..+.+.|++++|...++.. ... ..+.-.++..+-.+|..+++
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~v--LkaLsl~r~gk~~ea~~~Le~~-~~~-----~~~D~~tLq~l~~~y~d~~~ 92 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKV--LKALSLFRLGKGDEALKLLEAL-YGL-----KGTDDLTLQFLQNVYRDLGK 92 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHH--HHHHHHHHhcCchhHHHHHhhh-ccC-----CCCchHHHHHHHHHHHHHhh
Confidence 357899999999999999999887744 6788889999999999666533 221 22235678888999999999
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 000742 84 FKDALIYQVKKHLELAKDA 102 (1313)
Q Consensus 84 ~~~A~~~~~~kal~l~~~~ 102 (1313)
+++|...| +++...+|..
T Consensus 93 ~d~~~~~Y-e~~~~~~P~e 110 (932)
T KOG2053|consen 93 LDEAVHLY-ERANQKYPSE 110 (932)
T ss_pred hhHHHHHH-HHHHhhCCcH
Confidence 99999999 9999988873
No 304
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.02 Score=61.85 Aligned_cols=108 Identities=15% Similarity=0.171 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000742 164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIE 243 (1313)
Q Consensus 164 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~ 243 (1313)
..+.-|-.-|.-|+...+|..|...|.++++.- ..++...+..|.|.|.+....|+|..|+....+|+.+.+
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k-----c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P--- 150 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKK-----CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKP--- 150 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc-----CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCc---
Confidence 567888888999999999999999999999862 246777899999999999999999999999999999976
Q ss_pred hhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc
Q 000742 244 HCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSM 282 (1313)
Q Consensus 244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~ 282 (1313)
....+|+.-|.+++.+.++.+|..+.+..+.++.+.
T Consensus 151 ---~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 151 ---THLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred ---chhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 889999999999999999999999999998877543
No 305
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=96.89 E-value=0.056 Score=69.07 Aligned_cols=182 Identities=13% Similarity=0.109 Sum_probs=147.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHH
Q 000742 131 YSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSR 210 (1313)
Q Consensus 131 ~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 210 (1313)
+.+.+|.+ ..+++.+....... ..|..+..|..++.++...+++++|+.+-.+|.-+.+.. .+.+.+....
T Consensus 946 ~~~~~~~~-~~~slnl~~~v~~~-------~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~-~g~ds~~t~~ 1016 (1236)
T KOG1839|consen 946 DGFSEAYE-LPESLNLLNNVMGV-------LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERV-LGKDSPNTKL 1016 (1236)
T ss_pred cchhhhhh-hhhhhhHHHHhhhh-------cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechh-ccCCCHHHHH
Confidence 56666766 66666666543322 256889999999999999999999999999998887764 3467888999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--chhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccC-hhH
Q 000742 211 LHHNLGNVYMELRMWDKSREHIEQDIIICKKI--EHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMED-EDA 287 (1313)
Q Consensus 211 ~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~-~~~ 287 (1313)
.|.+++...+..++...|...+.++..+..-. .++|..+....+++.++...++++.|+++.+.|.+....... ...
T Consensus 1017 ~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l 1096 (1236)
T KOG1839|consen 1017 AYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKEL 1096 (1236)
T ss_pred HhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccch
Confidence 99999999999999999999999998876432 457888889999999999999999999999999998877655 334
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742 288 LASQIDQNIETVKKAIEVMDELKKEEQNLKKLTR 321 (1313)
Q Consensus 288 ~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~ 321 (1313)
..+..+..+++...+.+.+..+....+....++.
T Consensus 1097 ~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~ 1130 (1236)
T KOG1839|consen 1097 ETALSYHALARLFESMKDFRNALEHEKVTYGIYK 1130 (1236)
T ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHH
Confidence 4566788889999999999888777666555544
No 306
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.88 E-value=0.049 Score=62.53 Aligned_cols=213 Identities=13% Similarity=0.036 Sum_probs=125.5
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcC----------
Q 000742 35 GDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASD---------- 104 (1313)
Q Consensus 35 g~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~---------- 104 (1313)
-.-.....+.++-++..++|+++.+.. +.+|..+|.-. ..-..+|.+++ +++++..+..-.
T Consensus 175 Mq~AWRERnp~aRIkaA~eALei~pdC------AdAYILLAEEe--A~Ti~Eae~l~-rqAvkAgE~~lg~s~~~~~~g~ 245 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALEINPDC------ADAYILLAEEE--ASTIVEAEELL-RQAVKAGEASLGKSQFLQHHGH 245 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhhh------hHHHhhccccc--ccCHHHHHHHH-HHHHHHHHHhhchhhhhhcccc
Confidence 334456678888888888998888544 67777776532 23356777777 777776554310
Q ss_pred ---------HHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHH
Q 000742 105 ---------LVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGML 175 (1313)
Q Consensus 105 ---------~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~ 175 (1313)
..-...+-..+|.+...+ |+.++|++.++..++..... +...++.++..+
T Consensus 246 ~~e~~~~Rdt~~~~y~KrRLAmCarkl--------Gr~~EAIk~~rdLlke~p~~-------------~~l~IrenLie~ 304 (539)
T PF04184_consen 246 FWEAWHRRDTNVLVYAKRRLAMCARKL--------GRLREAIKMFRDLLKEFPNL-------------DNLNIRENLIEA 304 (539)
T ss_pred hhhhhhccccchhhhhHHHHHHHHHHh--------CChHHHHHHHHHHHhhCCcc-------------chhhHHHHHHHH
Confidence 001123445678888877 99999999999888763311 346789999999
Q ss_pred HHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHH-cCC---------------HHHHHHHHHHHHHHH
Q 000742 176 QMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYME-LRM---------------WDKSREHIEQDIIIC 239 (1313)
Q Consensus 176 y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~-~g~---------------~~~A~~~~~kal~~~ 239 (1313)
+..++.|.++...+.+.-++ .-+..+...+.-|....+ .++ -..|++.+.+|++..
T Consensus 305 LLelq~Yad~q~lL~kYdDi--------~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefN 376 (539)
T PF04184_consen 305 LLELQAYADVQALLAKYDDI--------SLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFN 376 (539)
T ss_pred HHhcCCHHHHHHHHHHhccc--------cCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhC
Confidence 99999999999888775322 112233333333433222 222 134566677777665
Q ss_pred HHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChh
Q 000742 240 KKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDED 286 (1313)
Q Consensus 240 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~ 286 (1313)
+-....-...+.+..-=.-+.+.|+ .+|+.|.--.+...++..+..
T Consensus 377 PHVp~YLLe~K~LilPPehilkrGD-SEAiaYAf~hL~hWk~veGAL 422 (539)
T PF04184_consen 377 PHVPKYLLEMKSLILPPEHILKRGD-SEAIAYAFFHLQHWKRVEGAL 422 (539)
T ss_pred CCCchhhhccCCCCCChHHhcCCCc-HHHHHHHHHHHHHHhcCHhHH
Confidence 5221100000000101122344554 777777777777766655543
No 307
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.87 E-value=0.029 Score=57.70 Aligned_cols=109 Identities=17% Similarity=0.179 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000742 164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIE 243 (1313)
Q Consensus 164 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~ 243 (1313)
..-.++..+|..|.+.|++++|++.|.++.+.... .......+.++-.+....+++..+..++.+|-.+....+
T Consensus 34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~------~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~ 107 (177)
T PF10602_consen 34 SIRMALEDLADHYCKIGDLEEALKAYSRARDYCTS------PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGG 107 (177)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc
Confidence 56789999999999999999999999999887543 566788899999999999999999999999999988766
Q ss_pred hhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 000742 244 HCQGEAKGYINLGELHYRVQKYDEAILCYQKALNL 278 (1313)
Q Consensus 244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~ 278 (1313)
+..........-|..+...++|.+|-..|-.+..-
T Consensus 108 d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 108 DWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred hHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 65555555666677777889999999888776543
No 308
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.86 E-value=0.0012 Score=49.98 Aligned_cols=36 Identities=42% Similarity=0.525 Sum_probs=20.0
Q ss_pred CcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCC
Q 000742 918 RLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSIT 958 (1313)
Q Consensus 918 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 958 (1313)
+|++|+|++|.|++ ++..+.++++|+.|++++|.|+
T Consensus 2 ~L~~L~l~~N~i~~-----l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-----LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-----HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-----cCchHhCCCCCCEEEecCCCCC
Confidence 56666666666664 3334556666666666666655
No 309
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.82 E-value=0.00096 Score=50.46 Aligned_cols=38 Identities=37% Similarity=0.382 Sum_probs=31.1
Q ss_pred ceeEEEeecCCCCHHHHHHHHHHhhcCCCccEEEccCCCCChh
Q 000742 1116 CLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASKEL 1158 (1313)
Q Consensus 1116 ~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~N~i~~~ 1158 (1313)
+|++|+|++|+|++ ++..+.++++|+.|+|++|+|++.
T Consensus 2 ~L~~L~l~~N~i~~-----l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITD-----LPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SS-----HGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcc-----cCchHhCCCCCCEEEecCCCCCCC
Confidence 48999999999984 566689999999999999999864
No 310
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.0035 Score=64.28 Aligned_cols=103 Identities=18% Similarity=0.219 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhh
Q 000742 167 DAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQ 246 (1313)
Q Consensus 167 ~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~ 246 (1313)
.-+..-|.-|+.-.+|+.|+..|.+|+.+ .|..+..|.+.+.+|+++++++.+.....+|+++.+
T Consensus 11 ~qlkE~gnk~f~~k~y~~ai~~y~raI~~---------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~------ 75 (284)
T KOG4642|consen 11 EQLKEQGNKCFIPKRYDDAIDCYSRAICI---------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDP------ 75 (284)
T ss_pred HHHHhccccccchhhhchHHHHHHHHHhc---------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcCh------
Confidence 33444456667778999999999999998 445678899999999999999999999999999987
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccC
Q 000742 247 GEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMED 284 (1313)
Q Consensus 247 ~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~ 284 (1313)
..+.+.+.+|........|++|+..+.+|..+......
T Consensus 76 N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~ 113 (284)
T KOG4642|consen 76 NLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPF 113 (284)
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCC
Confidence 88999999999999999999999999999988876543
No 311
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.82 E-value=0.25 Score=49.85 Aligned_cols=101 Identities=19% Similarity=0.148 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchh
Q 000742 166 IDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHC 245 (1313)
Q Consensus 166 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~ 245 (1313)
..+...+|..+...+++++|+..++.++... .+......+-..+|.+...+|++++|+..+..... .
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t------~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~-------~ 155 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALAQT------KDENLKALAALRLARVQLQQKKADAALKTLDTIKE-------E 155 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccc------hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc-------c
Confidence 3456678889999999999999999998763 34556777889999999999999999887765432 2
Q ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 000742 246 QGEAKGYINLGELHYRVQKYDEAILCYQKALNLA 279 (1313)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~ 279 (1313)
...+......|+++...|+-++|+..|++|++..
T Consensus 156 ~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 156 SWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 3455566778999999999999999999999986
No 312
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.77 E-value=0.00043 Score=72.29 Aligned_cols=104 Identities=24% Similarity=0.128 Sum_probs=51.2
Q ss_pred CCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHH
Q 000742 1029 SCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALAS 1108 (1313)
Q Consensus 1029 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~ 1108 (1313)
.+.+.|++.++.|+|. .++.. ++.|+.|.||-|.|+.. ..+..|++|++|.|..|.|.+. ..|.-
T Consensus 19 ~~vkKLNcwg~~L~DI---sic~k----Mp~lEVLsLSvNkIssL------~pl~rCtrLkElYLRkN~I~sl--dEL~Y 83 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI---SICEK----MPLLEVLSLSVNKISSL------APLQRCTRLKELYLRKNCIESL--DELEY 83 (388)
T ss_pred HHhhhhcccCCCccHH---HHHHh----cccceeEEeeccccccc------hhHHHHHHHHHHHHHhcccccH--HHHHH
Confidence 3455555555555542 22222 24566666666666554 1344566666666666666542 22222
Q ss_pred HhcCCCCceeEEEeecCCCCH-HHHHHHHHHhhcCCCccEEE
Q 000742 1109 LLMNPQCCLKVLVLSKCQLGL-AGVLQLIKALSENDTLEELN 1149 (1313)
Q Consensus 1109 ~l~~~~~~L~~L~Ls~n~i~~-~g~~~l~~~l~~~~~L~~L~ 1149 (1313)
+..-| +|++|+|..|.... .|-..-...|+.+|+|+.||
T Consensus 84 Lknlp--sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 84 LKNLP--SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhcCc--hhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 21111 36666666665332 23233344556666666654
No 313
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.018 Score=59.31 Aligned_cols=113 Identities=19% Similarity=0.170 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhcc---CCC------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000742 166 IDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEV---SED------DDGRSRLHHNLGNVYMELRMWDKSREHIEQDI 236 (1313)
Q Consensus 166 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~---~~~------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal 236 (1313)
..++..-|.-++..|+|.+|...|..|+...+.+.. +++ +......+.|++.|+...|+|-+++++....+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 467888899999999999999999999987665421 111 22345678999999999999999999999988
Q ss_pred HHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccC
Q 000742 237 IICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMED 284 (1313)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~ 284 (1313)
...+ ....+|+..|.++...-+..+|.+.+.+++++.|....
T Consensus 258 ~~~~------~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 258 RHHP------GNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred hcCC------chHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 8765 88999999999999999999999999999999886543
No 314
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=96.71 E-value=0.025 Score=72.03 Aligned_cols=198 Identities=16% Similarity=0.117 Sum_probs=159.2
Q ss_pred hhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHH
Q 000742 68 LPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDA--SDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMK 145 (1313)
Q Consensus 68 ~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~--~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~ 145 (1313)
+.-....|......|.+.+|.+ . -+++.+..+. .-+...+..|..++.++..+ +++++|+.+-.+|.-
T Consensus 932 a~~~~e~gq~~~~e~~~~~~~~-~-~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~--------~d~~~Ai~~~~ka~i 1001 (1236)
T KOG1839|consen 932 AKDSPEQGQEALLEDGFSEAYE-L-PESLNLLNNVMGVLHPEVASKYRSLAKLSNRL--------GDNQEAIAQQRKACI 1001 (1236)
T ss_pred hhhhhhhhhhhhcccchhhhhh-h-hhhhhHHHHhhhhcchhHHHHHHHHHHHHhhh--------cchHHHHHhccccee
Confidence 3444566777777788888888 6 6666665533 22456778899999999988 999999999999988
Q ss_pred HHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCH
Q 000742 146 LAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMW 225 (1313)
Q Consensus 146 l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~ 225 (1313)
+.+...... .|.....|.+++...+..++...|+..+.++..+..=. .+.++|..+....+++.++...+++
T Consensus 1002 i~eR~~g~d-------s~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls-~ge~hP~~a~~~~nle~l~~~v~e~ 1073 (1236)
T KOG1839|consen 1002 ISERVLGKD-------SPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLS-SGEDHPPTALSFINLELLLLGVEEA 1073 (1236)
T ss_pred eechhccCC-------CHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccc-cCCCCCchhhhhhHHHHHHhhHHHH
Confidence 877654443 46889999999999999999999999999998874332 2346788888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHhc--hhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcc
Q 000742 226 DKSREHIEQDIIICKKIE--HCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSME 283 (1313)
Q Consensus 226 ~~A~~~~~kal~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~ 283 (1313)
+.|+.+.+.|.++..+.. ..-..+..+..++..+..++++..|....+....+.+...
T Consensus 1074 d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~ql 1133 (1236)
T KOG1839|consen 1074 DTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQL 1133 (1236)
T ss_pred HHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhh
Confidence 999999999999877652 3445677888999999999999999999999998887643
No 315
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.70 E-value=0.61 Score=57.39 Aligned_cols=188 Identities=12% Similarity=0.025 Sum_probs=116.7
Q ss_pred HHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 000742 39 KNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRT 118 (1313)
Q Consensus 39 ~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~ 118 (1313)
...++|.+|++...+.++..|+ ...+...-|.++.++|++++|...+ +++...+..++ ..+..+-.+
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn------~~~a~vLkaLsl~r~gk~~ea~~~L--e~~~~~~~~D~-----~tLq~l~~~ 86 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPN------ALYAKVLKALSLFRLGKGDEALKLL--EALYGLKGTDD-----LTLQFLQNV 86 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHHhcCchhHHHHH--hhhccCCCCch-----HHHHHHHHH
Confidence 3567888998888888776632 2566677888999999999999666 55554444432 356788899
Q ss_pred HHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhh
Q 000742 119 YYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNE 198 (1313)
Q Consensus 119 y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 198 (1313)
|..+ +++++|...|+++..... . -.....+-.+|.+.+.|.+-.+.--+..+.+++
T Consensus 87 y~d~--------~~~d~~~~~Ye~~~~~~P---------------~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk 142 (932)
T KOG2053|consen 87 YRDL--------GKLDEAVHLYERANQKYP---------------S-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPK 142 (932)
T ss_pred HHHH--------hhhhHHHHHHHHHHhhCC---------------c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 9988 999999999999988733 2 345555666677777776655443333333332
Q ss_pred hccCCCchHHHHHHHHHHHHHHHcCCHHHHHH---------HHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHH
Q 000742 199 EEVSEDDDGRSRLHHNLGNVYMELRMWDKSRE---------HIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAI 269 (1313)
Q Consensus 199 ~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~---------~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 269 (1313)
.....|.-+..+.......+.+.. .+++.++.. +.....+.+.. .-.+...+|++++|.
T Consensus 143 --------~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~---gk~~s~aE~~L-yl~iL~~~~k~~eal 210 (932)
T KOG2053|consen 143 --------RAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKK---GKIESEAEIIL-YLLILELQGKYQEAL 210 (932)
T ss_pred --------ccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccC---CccchHHHHHH-HHHHHHhcccHHHHH
Confidence 123455555556665555555444 222222211 11111122211 124556788899999
Q ss_pred HHHHHH
Q 000742 270 LCYQKA 275 (1313)
Q Consensus 270 ~~~~ka 275 (1313)
+++..-
T Consensus 211 ~~l~~~ 216 (932)
T KOG2053|consen 211 EFLAIT 216 (932)
T ss_pred HHHHHH
Confidence 998443
No 316
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.68 E-value=0.36 Score=56.25 Aligned_cols=272 Identities=10% Similarity=-0.035 Sum_probs=146.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHH
Q 000742 170 NNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEA 249 (1313)
Q Consensus 170 ~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~ 249 (1313)
+..-..+...+.++. +...+++....+. .+..+.....-|..+...|+.+.|+.+++.++... -..-..
T Consensus 235 ~~~~~~~~~~p~~d~--~~~~~~Ll~~~~~-----~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~----~kQ~~~ 303 (546)
T KOG3783|consen 235 YQFISFVLGTPNPDG--EECEKALKKYRKR-----YPKGALWLLMEARILSIKGNSEAAIDMESLSIPIR----MKQVKS 303 (546)
T ss_pred HHHHHHHcCCCCccH--HHHHHHhHHHHHh-----CCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHH----HHHHHH
Confidence 333444444555444 3444444443332 33345566778888888899999999999998821 223556
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHH-HHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 000742 250 KGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALAS-QIDQNI-ETVKKAIEVMDELKKEEQNLKKLTRNMI--- 324 (1313)
Q Consensus 250 ~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~-~~~~~l-g~~~~a~~~~~~a~~~~~~~~~l~~~l~--- 324 (1313)
..++.+|.++..+.+|.+|..++....+...-..-.+...+ .++..- .....+.+.-+++..+.+....+....+
T Consensus 304 l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~ 383 (546)
T KOG3783|consen 304 LMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNL 383 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccC
Confidence 78899999999999999999999887776543322222221 122111 1111112222222222221111111100
Q ss_pred -HhhCCchHHHHHHHHHH--HHHHHHH-HHHHHHHHHH----HHHHHHHHHH--HHHHhCCchhhHHHHHHHHHHHHHhh
Q 000742 325 -IAKGTSQERKYLLQQNA--SLDRLIE-KSSMIFAWLK----HCEYAKRKKR--IASELCDKGKLSDSFLVIGESYQKLR 394 (1313)
Q Consensus 325 -~~~~~~~~a~~~~~~~~--~l~~L~~-~~~~~~~~~~----A~~~~~~a~~--i~~~~~~~~~~a~~~~~lg~~y~~~g 394 (1313)
..+.....+..+..+.. ...-++. .+..+-.|.. ...-.+++.. ......+.....--+..+|.++..+|
T Consensus 384 P~E~f~~RKverf~~~~~~~~~~~la~P~~El~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg 463 (546)
T KOG3783|consen 384 PLEKFIVRKVERFVKRGPLNASILLASPYYELAYFWNGFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLG 463 (546)
T ss_pred chhHHHHHHHHHHhccccccccccccchHHHHHHHHhhcccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcC
Confidence 00000001111111110 0000000 0111111111 0011111111 11122344455667788999999999
Q ss_pred CHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Q 000742 395 KFNKAIKWYTKSWEMYKS-IGNLEGQALAKVNMGNVLDSNGD-WAGALDAFQEGYRIAVE 452 (1313)
Q Consensus 395 ~~~~A~~~~~kal~l~~~-~~~~~~~~~~~~~lg~~y~~~g~-~~~A~~~~~kAl~i~~~ 452 (1313)
+...|..+|+.+++-... ..+..-.+.++|.+|..|..+|. ..+|..++.+|.+.+.+
T Consensus 464 ~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 464 DSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred CHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 999999999988865332 34455668899999999999998 99999999999887533
No 317
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.65 E-value=0.022 Score=56.62 Aligned_cols=83 Identities=17% Similarity=0.185 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHH
Q 000742 7 QMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGE----------YVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGE 76 (1313)
Q Consensus 7 ~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~----------~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~ 76 (1313)
-|+.|.+.++.....+|...++ ++.-|.++....+ +++|+.-|++|+.+. +....+++.+|.
T Consensus 6 ~FE~ark~aea~y~~nP~Dadn--L~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~------P~~hdAlw~lGn 77 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADN--LTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKIN------PNKHDALWCLGN 77 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHH--HHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-------TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHH--HHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC------CchHHHHHHHHH
Confidence 4778888888888889987666 7788877766544 345555555666555 334789999999
Q ss_pred HHHHccC----hHHHHHHHHHHHHHH
Q 000742 77 VYLRLEH----FKDALIYQVKKHLEL 98 (1313)
Q Consensus 77 ~y~~~g~----~~~A~~~~~~kal~l 98 (1313)
+|..++. ..+|..+| ++|.+.
T Consensus 78 A~ts~A~l~~d~~~A~~~F-~kA~~~ 102 (186)
T PF06552_consen 78 AYTSLAFLTPDTAEAEEYF-EKATEY 102 (186)
T ss_dssp HHHHHHHH---HHHHHHHH-HHHHHH
T ss_pred HHHHHHhhcCChHHHHHHH-HHHHHH
Confidence 9988753 33444555 444443
No 318
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.65 E-value=0.12 Score=58.62 Aligned_cols=171 Identities=21% Similarity=0.270 Sum_probs=117.5
Q ss_pred hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHH
Q 000742 5 EMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNR----GEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLR 80 (1313)
Q Consensus 5 ~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~----g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~ 80 (1313)
...+..|...+..+...... .....+|..|..- .+..+|.++|+.+.+ .....+.+.+|.+|..
T Consensus 54 ~~~~~~a~~~~~~a~~~~~~----~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--------~g~~~a~~~lg~~~~~ 121 (292)
T COG0790 54 PPDYAKALKSYEKAAELGDA----AALALLGQMYGAGKGVSRDKTKAADWYRCAAA--------DGLAEALFNLGLMYAN 121 (292)
T ss_pred cccHHHHHHHHHHhhhcCCh----HHHHHHHHHHHhccCccccHHHHHHHHHHHhh--------cccHHHHHhHHHHHhc
Confidence 46678888888888774444 3366777777643 468889999995533 3346788899999987
Q ss_pred ----ccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCC
Q 000742 81 ----LEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPAT 156 (1313)
Q Consensus 81 ----~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~ 156 (1313)
..++.+|..+| ++|.+...... ..+.+.+|..|..-. .......+...|...|.+|-..
T Consensus 122 G~gv~~d~~~A~~~~-~~Aa~~g~~~a-----~~~~~~l~~~~~~g~-~~~~~~~~~~~A~~~~~~aa~~---------- 184 (292)
T COG0790 122 GRGVPLDLVKALKYY-EKAAKLGNVEA-----ALAMYRLGLAYLSGL-QALAVAYDDKKALYLYRKAAEL---------- 184 (292)
T ss_pred CCCcccCHHHHHHHH-HHHHHcCChhH-----HHHHHHHHHHHHcCh-hhhcccHHHHhHHHHHHHHHHh----------
Confidence 45899999999 88877532211 344678888886420 0011112344777788777666
Q ss_pred CcchhhHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcC
Q 000742 157 SRSSFLKEYIDAHNNIGMLQME----LDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELR 223 (1313)
Q Consensus 157 ~~~~~~p~~~~~~~~la~~y~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g 223 (1313)
....+...+|.+|.. ..++++|..+|.+|-+. ++ ....+.++ ++...|
T Consensus 185 -------~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~-------g~----~~a~~~~~-~~~~~g 236 (292)
T COG0790 185 -------GNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ-------GD----GAACYNLG-LMYLNG 236 (292)
T ss_pred -------cCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-------CC----HHHHHHHH-HHHhcC
Confidence 346788899988865 34899999999999776 22 56777888 666655
No 319
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=0.00063 Score=71.10 Aligned_cols=103 Identities=23% Similarity=0.181 Sum_probs=69.5
Q ss_pred CCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCCCCCChhhHHHHHH
Q 000742 917 TRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLV 996 (1313)
Q Consensus 917 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 996 (1313)
.+.+.|++.++.|+|. .+...++.|++|.|+-|.|+. +. .|..|+.|++|.|..|.|-+-+ -+.
T Consensus 19 ~~vkKLNcwg~~L~DI------sic~kMp~lEVLsLSvNkIss-----L~-pl~rCtrLkElYLRkN~I~sld----EL~ 82 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI------SICEKMPLLEVLSLSVNKISS-----LA-PLQRCTRLKELYLRKNCIESLD----ELE 82 (388)
T ss_pred HHhhhhcccCCCccHH------HHHHhcccceeEEeecccccc-----ch-hHHHHHHHHHHHHHhcccccHH----HHH
Confidence 5678888888888886 344567788888888888873 32 3567888888888888842222 223
Q ss_pred hhccCCccceeecCCCCCChHHHHHHHH--HhhcCCccEEE
Q 000742 997 KLDTLKSFSELNLNGLKLSKPVVDRLCQ--LAKTSCLTHLM 1035 (1313)
Q Consensus 997 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~--l~~~~~L~~L~ 1035 (1313)
-|.++++|+.|.|..|...+.+...... +...++|+.||
T Consensus 83 YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 83 YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 4567888888888888765544443322 33456777765
No 320
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.59 E-value=0.058 Score=64.98 Aligned_cols=126 Identities=18% Similarity=0.060 Sum_probs=95.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHH
Q 000742 131 YSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSR 210 (1313)
Q Consensus 131 ~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 210 (1313)
...+.|.+.+....+. .|+-+..+...|.++...|+.++|++.|++++....+. ......
T Consensus 247 ~~~~~a~~lL~~~~~~---------------yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~-----~Ql~~l 306 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR---------------YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEW-----KQLHHL 306 (468)
T ss_pred CCHHHHHHHHHHHHHh---------------CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH-----HhHHHH
Confidence 4455566666655554 34446788899999999999999999999998643332 444567
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHH
Q 000742 211 LHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKY-------DEAILCYQKALNLAQS 281 (1313)
Q Consensus 211 ~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~kal~~~~~ 281 (1313)
.++.+|.++..+.+|++|..++.+..+... ...+..++..|.++...++. ++|.++++++-.+..+
T Consensus 307 ~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-----WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k 379 (468)
T PF10300_consen 307 CYFELAWCHMFQHDWEEAAEYFLRLLKESK-----WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQK 379 (468)
T ss_pred HHHHHHHHHHHHchHHHHHHHHHHHHhccc-----cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhh
Confidence 899999999999999999999999887543 35666778888999999998 6666666666655543
No 321
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.57 E-value=0.019 Score=60.88 Aligned_cols=97 Identities=16% Similarity=0.070 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCc-hhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCC-------chhHHHHHHH
Q 000742 354 FAWLKHCEYAKRKKRIASELCDK-GKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGN-------LEGQALAKVN 425 (1313)
Q Consensus 354 ~~~~~A~~~~~~a~~i~~~~~~~-~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~-------~~~~~~~~~~ 425 (1313)
..++.|++.|.-|+-.+...... ...+.++..+|++|..+|+.+....++++|++.+..... ......+.+.
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL 170 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL 170 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence 34667777777777776655533 467899999999999999988888888888877764321 2345678899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHH
Q 000742 426 MGNVLDSNGDWAGALDAFQEGYRIA 450 (1313)
Q Consensus 426 lg~~y~~~g~~~~A~~~~~kAl~i~ 450 (1313)
+|.++.+.|++++|..+|.+.+...
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 9999999999999999999988754
No 322
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.49 Score=53.34 Aligned_cols=197 Identities=12% Similarity=0.012 Sum_probs=144.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000742 164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIE 243 (1313)
Q Consensus 164 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~ 243 (1313)
.-.+.....|.++....++..|...++++.-.+.+. ....+...+...++.++.+.+..-.+..+.-.++....+..
T Consensus 271 ~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~---~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey~ 347 (482)
T KOG4322|consen 271 QSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKG---CNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEYS 347 (482)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---hhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHhc
Confidence 346777889999999999999999999998887763 56777888999999999999999999999999999888877
Q ss_pred hhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742 244 HCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNM 323 (1313)
Q Consensus 244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l 323 (1313)
.....+.+-..+|..+...|-.++|...+..|+....-.+...... .++.-..+.+.|..
T Consensus 348 ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~dra-ra~fvfanC~lA~a------------------- 407 (482)
T KOG4322|consen 348 LDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRA-RAIFVFANCTLAFA------------------- 407 (482)
T ss_pred cchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcc-eeEEEEEeeeecch-------------------
Confidence 7777788888999999999999999999999987654433211110 00000000000000
Q ss_pred HHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHH---HHH
Q 000742 324 IIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFN---KAI 400 (1313)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~---~A~ 400 (1313)
......+.+.+.++.++|..+..+++.+....++++-++..|...|+-+ ++.
T Consensus 408 -------------------------~s~~~e~ld~~~~~L~~A~~~f~kL~~he~ildv~yf~A~~yn~lGd~~eRn~~A 462 (482)
T KOG4322|consen 408 -------------------------LSCANESLDGFPRYLDLAQSIFYKLGCHEKILDVTYFSAYQYNHLGDSPERNLLA 462 (482)
T ss_pred -------------------------hhhhhhhHHhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHhhcCchHHHHHH
Confidence 0013455677778888888888888888888888888899998888754 445
Q ss_pred HHHHHHHH
Q 000742 401 KWYTKSWE 408 (1313)
Q Consensus 401 ~~~~kal~ 408 (1313)
..|+|++.
T Consensus 463 slFrk~~~ 470 (482)
T KOG4322|consen 463 SLFRKAWR 470 (482)
T ss_pred HHHHHHHH
Confidence 55666554
No 323
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.57 E-value=2 Score=48.95 Aligned_cols=52 Identities=15% Similarity=0.113 Sum_probs=43.5
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000742 387 GESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQE 445 (1313)
Q Consensus 387 g~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~k 445 (1313)
|..++.+|+|.++.-|-.=..+++| ...+|..+|.+....++|++|..++.+
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaP-------S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAP-------SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCC-------cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 5566889999999988777776654 457899999999999999999998875
No 324
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.54 E-value=0.19 Score=57.97 Aligned_cols=216 Identities=15% Similarity=0.083 Sum_probs=133.0
Q ss_pred HHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhcc
Q 000742 73 SLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKE 152 (1313)
Q Consensus 73 ~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~ 152 (1313)
.+-.-..+..+.++-++.. ++|+++.++.. .+|..+|.- ......+|+.+|++|++..+..-.
T Consensus 173 ~IMq~AWRERnp~aRIkaA-~eALei~pdCA------dAYILLAEE----------eA~Ti~Eae~l~rqAvkAgE~~lg 235 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAA-KEALEINPDCA------DAYILLAEE----------EASTIVEAEELLRQAVKAGEASLG 235 (539)
T ss_pred HHHHHHHhcCCHHHHHHHH-HHHHHhhhhhh------HHHhhcccc----------cccCHHHHHHHHHHHHHHHHHhhc
Confidence 3344445667888889999 99999987664 344444432 225578999999999988776433
Q ss_pred CCCCCcc--h--------hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHc
Q 000742 153 NPATSRS--S--------FLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMEL 222 (1313)
Q Consensus 153 ~~~~~~~--~--------~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~ 222 (1313)
....... . ...-...+...+|.+..++|+.++|++.+...++..+. .....++.++..++..+
T Consensus 236 ~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~-------~~~l~IrenLie~LLel 308 (539)
T PF04184_consen 236 KSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPN-------LDNLNIRENLIEALLEL 308 (539)
T ss_pred hhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCc-------cchhhHHHHHHHHHHhc
Confidence 2110000 0 01113566778999999999999999999999887432 23456899999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHH-hcC---------------HHHHHHHHHHHHHHHHHccChh
Q 000742 223 RMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYR-VQK---------------YDEAILCYQKALNLAQSMEDED 286 (1313)
Q Consensus 223 g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~-~g~---------------~~~A~~~~~kal~~~~~~~~~~ 286 (1313)
+.|.++...+.+--++. .+..+...+.-|.+-.+ .++ -..|++.+.+|++..|......
T Consensus 309 q~Yad~q~lL~kYdDi~-----lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL 383 (539)
T PF04184_consen 309 QAYADVQALLAKYDDIS-----LPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL 383 (539)
T ss_pred CCHHHHHHHHHHhcccc-----CCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence 99999988877742221 12334444444443322 121 1346788888888877654321
Q ss_pred HHH------HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 000742 287 ALA------SQIDQNIETVKKAIEVMDELKKEEQNLKK 318 (1313)
Q Consensus 287 ~~~------~~~~~~lg~~~~a~~~~~~a~~~~~~~~~ 318 (1313)
... -.-+...|+ .+|+.+.--....++....
T Consensus 384 Le~K~LilPPehilkrGD-SEAiaYAf~hL~hWk~veG 420 (539)
T PF04184_consen 384 LEMKSLILPPEHILKRGD-SEAIAYAFFHLQHWKRVEG 420 (539)
T ss_pred hccCCCCCChHHhcCCCc-HHHHHHHHHHHHHHhcCHh
Confidence 111 011223343 5566665555555554443
No 325
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.50 E-value=0.42 Score=48.31 Aligned_cols=99 Identities=14% Similarity=0.103 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000742 111 ACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLI 190 (1313)
Q Consensus 111 a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~ 190 (1313)
+...++..+..- +++++|+..++.++.....- ...+.+-.++|.+...+|++++|+..+.
T Consensus 91 aaL~lAk~~ve~--------~~~d~A~aqL~~~l~~t~De------------~lk~l~~lRLArvq~q~~k~D~AL~~L~ 150 (207)
T COG2976 91 AALELAKAEVEA--------NNLDKAEAQLKQALAQTKDE------------NLKALAALRLARVQLQQKKADAALKTLD 150 (207)
T ss_pred HHHHHHHHHHhh--------ccHHHHHHHHHHHHccchhH------------HHHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 445566666654 99999999999888653221 1345678899999999999999998876
Q ss_pred HHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000742 191 RGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIIC 239 (1313)
Q Consensus 191 ~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~ 239 (1313)
.. .++...+......|.++...|+-++|+..|++|++..
T Consensus 151 t~----------~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 151 TI----------KEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred cc----------ccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 54 2244456667788999999999999999999999884
No 326
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.49 E-value=0.0057 Score=44.10 Aligned_cols=33 Identities=18% Similarity=0.461 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhC
Q 000742 382 SFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIG 414 (1313)
Q Consensus 382 ~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~ 414 (1313)
++..||.+|..+|+|++|+.+|++++.+..+..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~ 33 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPE 33 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 467899999999999999999999998876543
No 327
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=96.43 E-value=0.038 Score=50.19 Aligned_cols=81 Identities=22% Similarity=0.244 Sum_probs=67.7
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHhhCCCC---CchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 000742 38 LKNRGEYVEALKWFRIDYDVSVKYLPEK---HLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQ 114 (1313)
Q Consensus 38 y~~~g~~~eAl~~~~~al~~~~~~~~~~---~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~ 114 (1313)
....|+|.+|++.+.+..+......... ....+...+|.++...|++++|+..+ ++|++++++.+|....+.++..
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l-~eAi~~Are~~D~~~l~~al~~ 86 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQAL-EEAIRLARENGDRRCLAYALSW 86 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHH-HHHHHHHHHHCCHHHHHHHHHH
Confidence 3578999999999999999987765544 34567888999999999999999999 9999999999998877766666
Q ss_pred HHHHH
Q 000742 115 LGRTY 119 (1313)
Q Consensus 115 lg~~y 119 (1313)
+..+.
T Consensus 87 ~~~l~ 91 (94)
T PF12862_consen 87 LANLL 91 (94)
T ss_pred HHHHh
Confidence 65543
No 328
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.37 E-value=0.04 Score=58.36 Aligned_cols=101 Identities=20% Similarity=0.235 Sum_probs=82.9
Q ss_pred cCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-------chhhhHHHH
Q 000742 179 LDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKI-------EHCQGEAKG 251 (1313)
Q Consensus 179 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~-------~~~~~~~~~ 251 (1313)
...+++|++.|.-|+-.+.-. ...+...+.++..+|-+|..+|+.+....++++|++.+.+. ....+...+
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~--~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l 167 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIK--KEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL 167 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence 367899999999998876643 23455789999999999999999988888888888888765 113355788
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 000742 252 YINLGELHYRVQKYDEAILCYQKALNLAQS 281 (1313)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~kal~~~~~ 281 (1313)
++.+|.++.+.|++++|.++|.+.+.....
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999876543
No 329
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.34 E-value=0.0051 Score=43.70 Aligned_cols=30 Identities=20% Similarity=0.672 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Q 000742 381 DSFLVIGESYQKLRKFNKAIKWYTKSWEMY 410 (1313)
Q Consensus 381 ~~~~~lg~~y~~~g~~~~A~~~~~kal~l~ 410 (1313)
.+|..+|.+|..+|++++|+.+|++|+++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 455556666666666666666666666554
No 330
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.29 E-value=0.091 Score=52.40 Aligned_cols=90 Identities=19% Similarity=0.207 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHh-chhhhHHHHHHHHHH
Q 000742 182 LEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMW---DKSREHIEQDIIICKKI-EHCQGEAKGYINLGE 257 (1313)
Q Consensus 182 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~---~~A~~~~~kal~~~~~~-~~~~~~~~~~~~la~ 257 (1313)
|+.|.+.++..... +|..+..+++.|.++..+.++ .++.+.++.|+..++.. .-.|....+++.+|.
T Consensus 7 FE~ark~aea~y~~---------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGn 77 (186)
T PF06552_consen 7 FEHARKKAEAAYAK---------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGN 77 (186)
T ss_dssp HHHHHHHHHHHHHH----------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 45666666666655 455678888888888777544 34555555555444332 334488899999999
Q ss_pred HHHHhcC-----------HHHHHHHHHHHHHHHH
Q 000742 258 LHYRVQK-----------YDEAILCYQKALNLAQ 280 (1313)
Q Consensus 258 ~~~~~g~-----------~~~A~~~~~kal~~~~ 280 (1313)
+|...+. |++|..+|++|....|
T Consensus 78 A~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P 111 (186)
T PF06552_consen 78 AYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDP 111 (186)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 9987654 4455555555555544
No 331
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.3 Score=53.11 Aligned_cols=110 Identities=15% Similarity=0.130 Sum_probs=94.0
Q ss_pred CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc
Q 000742 203 EDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSM 282 (1313)
Q Consensus 203 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~ 282 (1313)
+.+...+.-|-.-|+-|+..++|..|+..|.++++. +..+....+..|.+.|.+.+..|+|..|+.-..+|+.+.|..
T Consensus 75 ~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~--kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h 152 (390)
T KOG0551|consen 75 GEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKK--KCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH 152 (390)
T ss_pred CChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh--cCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch
Confidence 455567888888999999999999999999999875 456777889999999999999999999999999999999998
Q ss_pred cChhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 000742 283 EDEDALASQIDQNIETVKKAIEVMDELKKEEQ 314 (1313)
Q Consensus 283 ~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~ 314 (1313)
...+...+.++..+..+..|....++......
T Consensus 153 ~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 153 LKAYIRGAKCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 88777778888888888888877777654333
No 332
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.25 E-value=0.0056 Score=43.48 Aligned_cols=30 Identities=40% Similarity=0.749 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 000742 251 GYINLGELHYRVQKYDEAILCYQKALNLAQ 280 (1313)
Q Consensus 251 ~~~~la~~~~~~g~~~~A~~~~~kal~~~~ 280 (1313)
+|+++|.+|..+|++++|+.+|++|+++.|
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 444445555555555555555555544443
No 333
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.23 E-value=2.1 Score=49.90 Aligned_cols=127 Identities=11% Similarity=-0.015 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHH-HHHHh-----
Q 000742 340 NASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWE-MYKSI----- 413 (1313)
Q Consensus 340 ~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~-l~~~~----- 413 (1313)
+..+-..+...+..|.++.|..++.++......... ..+.+....+.+....|+..+|+..++..++ .....
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~--~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSES--LLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccC--CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 344667777888889999988888877654322221 1457778889999999999999999998887 22211
Q ss_pred ----------------------CCchhHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHHcCChhHHHHHHHh
Q 000742 414 ----------------------GNLEGQALAKVNMGNVLDSN------GDWAGALDAFQEGYRIAVEANLPSVQLSALEN 465 (1313)
Q Consensus 414 ----------------------~~~~~~~~~~~~lg~~y~~~------g~~~~A~~~~~kAl~i~~~~~~~~~~~~al~~ 465 (1313)
......+.++..+|...... ++++++...|++|.++... ...++..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~------~~k~~~~ 297 (352)
T PF02259_consen 224 NAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS------WEKAWHS 297 (352)
T ss_pred HHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh------HHHHHHH
Confidence 11234567788888888888 8899999999999988543 3447788
Q ss_pred hHHHHHHhh
Q 000742 466 MHYSHMIRF 474 (1313)
Q Consensus 466 L~~~~~~~~ 474 (1313)
+|..+....
T Consensus 298 ~a~~~~~~~ 306 (352)
T PF02259_consen 298 WALFNDKLL 306 (352)
T ss_pred HHHHHHHHH
Confidence 887776543
No 334
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.031 Score=57.65 Aligned_cols=102 Identities=13% Similarity=0.109 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHH
Q 000742 343 LDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALA 422 (1313)
Q Consensus 343 l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~ 422 (1313)
+..-|..+.....|..|+..|-+++.+. |..+..|.+.+.+|+++++++.+.....+|+++.+ ..+.+
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~n------P~~~~Y~tnralchlk~~~~~~v~~dcrralql~~------N~vk~ 80 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICIN------PTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDP------NLVKA 80 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhcC------CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcCh------HHHHH
Confidence 3344555666777888888777776553 66668999999999999999999999999999865 67788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh
Q 000742 423 KVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLP 456 (1313)
Q Consensus 423 ~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~ 456 (1313)
++.+|........|.+|+..+++|+.+.+....+
T Consensus 81 h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~ 114 (284)
T KOG4642|consen 81 HYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFT 114 (284)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999886544
No 335
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=96.16 E-value=0.0065 Score=40.77 Aligned_cols=27 Identities=33% Similarity=0.399 Sum_probs=24.8
Q ss_pred cccCceecCCCCCCCHHHHHHHHHHHh
Q 000742 1251 AKPLQLLDLSNNGFSTQAVKTLYCAWS 1277 (1313)
Q Consensus 1251 ~~~L~~LdLs~N~l~~~~~~~l~~~l~ 1277 (1313)
+++|++|||++|.|+++|+..|+.+++
T Consensus 1 n~~L~~LdL~~N~i~~~G~~~L~~~L~ 27 (28)
T smart00368 1 NPSLRELDLSNNKLGDEGARALAEALK 27 (28)
T ss_pred CCccCEEECCCCCCCHHHHHHHHHHhc
Confidence 368999999999999999999999875
No 336
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=96.08 E-value=1.4 Score=48.24 Aligned_cols=202 Identities=14% Similarity=0.105 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCH------------HHHHHHHHHHHHHHHHHhcc---CCc--chh-
Q 000742 70 TCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDL------------VEQQRACTQLGRTYYEMFLR---SDD--DHY- 131 (1313)
Q Consensus 70 ~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~------------~~~a~a~~~lg~~y~~l~~~---~~~--~~~- 131 (1313)
+.+.+..+|+..|+..+|+..+ ++.+....+..+. ...++-+..+|......... ... ..|
T Consensus 12 i~~ki~rl~l~~~~~~~Av~q~-~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~~fAeL~~~~~~~~l~~~~~~~pG~ 90 (247)
T PF11817_consen 12 IAFKICRLYLWLNQPTEAVRQF-RAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQVFAELLEEAPISGLTPPSTQHPGF 90 (247)
T ss_pred HHHHHHHHHHhCCCHHHHHHHH-HHHHHHHHhhcCCCCCCccchhhHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcch
Confidence 3456778888999999999999 9988887655332 22233333444444322000 000 001
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCC---CCc--------chh--hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhh
Q 000742 132 SIRNAKKYFKSAMKLAQTLKENPA---TSR--------SSF--LKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNE 198 (1313)
Q Consensus 132 ~~~~A~~~~~~Al~l~~~~~~~~~---~~~--------~~~--~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 198 (1313)
-|..|-.+...--+.+..+...+. ... ..+ .|.....+............-...++.+.+|++.++.
T Consensus 91 yy~~AA~~~~~Rr~~a~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~hs~~iI~lL~~A~~~f~~ 170 (247)
T PF11817_consen 91 YYQIAAKHAVERRKLAEAIPPDPDSSPASSVVPSFYGYDTYSLPPSPHEEYPLLQSEEKGVDHSKLIIELLEKAYEQFKK 170 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCchhhccchhhcccccccCchhHHHHHhhhccccccchHHHHHHHHHHHHHHHHH
Confidence 133344444433444444421110 000 000 1111122222222222334556678899999998887
Q ss_pred hccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 000742 199 EEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKA 275 (1313)
Q Consensus 199 ~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ka 275 (1313)
. +.......+...+|..|+..|+|++|.++|+.+...+.+.+-......++..+..++...|+.+..+.+.-+.
T Consensus 171 ~---~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 171 Y---GQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred h---ccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4 5567778888899999999999999999999998888776666677888889999999999998877765443
No 337
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.03 E-value=0.009 Score=42.35 Aligned_cols=30 Identities=23% Similarity=0.678 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Q 000742 381 DSFLVIGESYQKLRKFNKAIKWYTKSWEMY 410 (1313)
Q Consensus 381 ~~~~~lg~~y~~~g~~~~A~~~~~kal~l~ 410 (1313)
.++..+|.+|..+|++++|+.+|++++++.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 455556666666666666666666666553
No 338
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.00 E-value=0.0051 Score=70.38 Aligned_cols=55 Identities=15% Similarity=0.241 Sum_probs=28.6
Q ss_pred hhcCCccEEEccCCCCCCchHHHHHHHHhcCCCcccEEEccCCC-CChhHHHHHHHHHhcCCCccEEEccCC
Q 000742 1026 AKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCG-LESTCIHKFTASVSLVHGILELNLGGN 1096 (1313)
Q Consensus 1026 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~N 1096 (1313)
..+..++.|++++|.|... + . ..++|++|.+++|. ++. ++..+ .++|+.|+|++|
T Consensus 49 ~~~~~l~~L~Is~c~L~sL-----P-~---LP~sLtsL~Lsnc~nLts-----LP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 49 EEARASGRLYIKDCDIESL-----P-V---LPNELTEITIENCNNLTT-----LPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HHhcCCCEEEeCCCCCccc-----C-C---CCCCCcEEEccCCCCccc-----CCchh--hhhhhheEccCc
Confidence 3345677777777766432 1 1 11357777776654 221 11111 146677777766
No 339
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=95.92 E-value=0.011 Score=39.73 Aligned_cols=26 Identities=38% Similarity=0.455 Sum_probs=19.7
Q ss_pred CCcCEEEecCCCCChhHHHHHHHHHh
Q 000742 917 TRLGVLNLSGNRLTDACGSYLSTILK 942 (1313)
Q Consensus 917 ~~L~~L~Ls~n~l~~~~~~~l~~~l~ 942 (1313)
++|++|||++|.|++.|+..+++.|.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~L~ 27 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEALK 27 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHHhc
Confidence 56788888888888888777777654
No 340
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.82 E-value=0.012 Score=41.67 Aligned_cols=28 Identities=21% Similarity=0.391 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000742 211 LHHNLGNVYMELRMWDKSREHIEQDIII 238 (1313)
Q Consensus 211 ~~~~lg~~y~~~g~~~~A~~~~~kal~~ 238 (1313)
+++.+|.+|..+|++++|+++|++++++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444
No 341
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.80 E-value=5.4 Score=46.52 Aligned_cols=118 Identities=16% Similarity=0.144 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHh
Q 000742 164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDII-ICKKI 242 (1313)
Q Consensus 164 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~-~~~~~ 242 (1313)
..+..+..++.+..+.|.++.|..++.++....... ......+.+..+.+....|+..+|+..++..+. .....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~-----~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~ 218 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSS-----ESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKN 218 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcc-----cCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc
Confidence 677899999999999999999999999988764321 111456778889999999999999999998888 22211
Q ss_pred ---------------------------chhhhHHHHHHHHHHHHHHh------cCHHHHHHHHHHHHHHHHHccChh
Q 000742 243 ---------------------------EHCQGEAKGYINLGELHYRV------QKYDEAILCYQKALNLAQSMEDED 286 (1313)
Q Consensus 243 ---------------------------~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~kal~~~~~~~~~~ 286 (1313)
......+.++..+|...... +.+++++..|++|.++.+.....+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~ 295 (352)
T PF02259_consen 219 IDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAW 295 (352)
T ss_pred cccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHH
Confidence 12245577888888888888 889999999999999988665433
No 342
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.76 E-value=0.0078 Score=68.93 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=17.5
Q ss_pred CCCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecC
Q 000742 916 FTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENC 955 (1313)
Q Consensus 916 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 955 (1313)
+.+++.|++++|.|+. ++. -..+|++|.+++|
T Consensus 51 ~~~l~~L~Is~c~L~s-----LP~---LP~sLtsL~Lsnc 82 (426)
T PRK15386 51 ARASGRLYIKDCDIES-----LPV---LPNELTEITIENC 82 (426)
T ss_pred hcCCCEEEeCCCCCcc-----cCC---CCCCCcEEEccCC
Confidence 3666666666665553 221 1224666666664
No 343
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.75 E-value=1.6 Score=59.70 Aligned_cols=89 Identities=8% Similarity=-0.044 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHH
Q 000742 182 LEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYR 261 (1313)
Q Consensus 182 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~ 261 (1313)
..+-+-.+++++-..... .+.....+.+|...|++....|+++.|..++-+|.+. ..+.++...|...+.
T Consensus 1645 ~~epILa~RRs~l~~~~~--~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~--------r~~~i~~E~AK~lW~ 1714 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMR--SNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKES--------RLPEIVLERAKLLWQ 1714 (2382)
T ss_pred HHhHHHHHHHHHHHHhcc--ccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc--------ccchHHHHHHHHHHh
Confidence 455555566655443221 1346778999999999999999999999999888776 467899999999999
Q ss_pred hcCHHHHHHHHHHHHHHHH
Q 000742 262 VQKYDEAILCYQKALNLAQ 280 (1313)
Q Consensus 262 ~g~~~~A~~~~~kal~~~~ 280 (1313)
.|+...|+.++++.++...
T Consensus 1715 ~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1715 TGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred hccHHHHHHHHHHHHHhhc
Confidence 9999999999999996654
No 344
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.75 E-value=0.019 Score=40.73 Aligned_cols=31 Identities=19% Similarity=0.653 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Q 000742 381 DSFLVIGESYQKLRKFNKAIKWYTKSWEMYK 411 (1313)
Q Consensus 381 ~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~ 411 (1313)
.++..+|.+|..+|++++|+++|++++++.+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4555566666666666666666666665543
No 345
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.67 E-value=1.3 Score=52.12 Aligned_cols=184 Identities=15% Similarity=0.116 Sum_probs=101.4
Q ss_pred HHHHHHHHHccChHHHHHHHHHH------HHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHH
Q 000742 72 QSLGEVYLRLEHFKDALIYQVKK------HLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMK 145 (1313)
Q Consensus 72 ~~lg~~y~~~g~~~~A~~~~~~k------al~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~ 145 (1313)
..+|.++...|+|.+|.+.| .+ |++++.+.. .+..+.-|... |.-++-....++-.+
T Consensus 636 iLlA~~~Ay~gKF~EAAklF-k~~G~enRAlEmyTDlR--------MFD~aQE~~~~--------g~~~eKKmL~RKRA~ 698 (1081)
T KOG1538|consen 636 LLLADVFAYQGKFHEAAKLF-KRSGHENRALEMYTDLR--------MFDYAQEFLGS--------GDPKEKKMLIRKRAD 698 (1081)
T ss_pred HHHHHHHHhhhhHHHHHHHH-HHcCchhhHHHHHHHHH--------HHHHHHHHhhc--------CChHHHHHHHHHHHH
Confidence 35788888899999998888 43 444433321 23334444432 444455555555555
Q ss_pred HHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHH------HHHHHhHhhhhccCCCchHHHHHHHHHHHHH
Q 000742 146 LAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKF------LIRGLEICNEEEVSEDDDGRSRLHHNLGNVY 219 (1313)
Q Consensus 146 l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~------~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y 219 (1313)
.+....++. .-|.++...|+.++|+.. .+-++++..++ +...-..+..++..+
T Consensus 699 WAr~~kePk----------------aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkl-----d~~ere~l~~~a~yl 757 (1081)
T KOG1538|consen 699 WARNIKEPK----------------AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKL-----DKAEREPLLLCATYL 757 (1081)
T ss_pred HhhhcCCcH----------------HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhc-----chhhhhHHHHHHHHH
Confidence 555544432 235566777888888765 33445554443 222333444555555
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHH
Q 000742 220 MELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETV 299 (1313)
Q Consensus 220 ~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~ 299 (1313)
..+..+.-|-+.|++.=.. ..+-+++...++|.+|....++--+..+ +.+...++.+....++
T Consensus 758 k~l~~~gLAaeIF~k~gD~--------------ksiVqlHve~~~W~eAFalAe~hPe~~~---dVy~pyaqwLAE~DrF 820 (1081)
T KOG1538|consen 758 KKLDSPGLAAEIFLKMGDL--------------KSLVQLHVETQRWDEAFALAEKHPEFKD---DVYMPYAQWLAENDRF 820 (1081)
T ss_pred hhccccchHHHHHHHhccH--------------HHHhhheeecccchHhHhhhhhCccccc---cccchHHHHhhhhhhH
Confidence 5555555555555443222 2244567788899998877765444443 2233344445555555
Q ss_pred HHHHHHHHHHH
Q 000742 300 KKAIEVMDELK 310 (1313)
Q Consensus 300 ~~a~~~~~~a~ 310 (1313)
.+|.+.|.++.
T Consensus 821 eEAqkAfhkAG 831 (1081)
T KOG1538|consen 821 EEAQKAFHKAG 831 (1081)
T ss_pred HHHHHHHHHhc
Confidence 56655555543
No 346
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.63 E-value=0.018 Score=43.78 Aligned_cols=42 Identities=12% Similarity=0.219 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHH
Q 000742 210 RLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGE 257 (1313)
Q Consensus 210 ~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~ 257 (1313)
.++..+|.+|...|++++|++.|+++++..| +...++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P------~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDP------DDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc------CCHHHHHHhhh
Confidence 3567788888888888888888888888766 56666666654
No 347
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.61 E-value=0.016 Score=44.05 Aligned_cols=42 Identities=12% Similarity=0.260 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Q 000742 381 DSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGN 428 (1313)
Q Consensus 381 ~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~ 428 (1313)
.++..+|.+|..+|++++|+..|+++++..| +...++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P------~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDP------DDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc------CCHHHHHHhhh
Confidence 4677889999999999999999999987755 45566666664
No 348
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.61 E-value=0.024 Score=40.19 Aligned_cols=31 Identities=26% Similarity=0.500 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742 421 LAKVNMGNVLDSNGDWAGALDAFQEGYRIAV 451 (1313)
Q Consensus 421 ~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~ 451 (1313)
.+|+.+|.+|..+|++++|+.+|++++++.+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5689999999999999999999999999864
No 349
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.58 E-value=0.14 Score=52.98 Aligned_cols=114 Identities=10% Similarity=0.068 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhcc--CCCCCcc-hhhHHHHHHHHHHHHHHHHcCCHHHHH
Q 000742 110 RACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKE--NPATSRS-SFLKEYIDAHNNIGMLQMELDNLEEAK 186 (1313)
Q Consensus 110 ~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~--~~~~~~~-~~~p~~~~~~~~la~~y~~~g~~~~A~ 186 (1313)
.++..-|+-++.. |+|.+|...|+.|+...+.+.- .+....+ .........+.|++.++...|+|-+++
T Consensus 179 ~~l~q~GN~lfk~--------~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevl 250 (329)
T KOG0545|consen 179 PVLHQEGNRLFKL--------GRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVL 250 (329)
T ss_pred HHHHHhhhhhhhh--------ccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHH
Confidence 4566778777777 9999999999999998887543 3332221 122344567889999999999999999
Q ss_pred HHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742 187 KFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICK 240 (1313)
Q Consensus 187 ~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~ 240 (1313)
+.....+.. .+....+|+..|.++...=+.++|...|.+++++.+
T Consensus 251 eh~seiL~~---------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 251 EHCSEILRH---------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDP 295 (329)
T ss_pred HHHHHHHhc---------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence 999999887 445788999999999999999999999999999877
No 350
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.57 E-value=0.34 Score=48.30 Aligned_cols=109 Identities=13% Similarity=0.127 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCC--C-----------chHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000742 167 DAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSE--D-----------DDGRSRLHHNLGNVYMELRMWDKSREHIE 233 (1313)
Q Consensus 167 ~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~--~-----------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~ 233 (1313)
..+...|......++.+.++..+++++.++..--..+ . ......+...++..+...|++++|+..++
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ 86 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 3344445555667889999999999999875421101 0 11234456677888889999999999999
Q ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 000742 234 QDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQS 281 (1313)
Q Consensus 234 kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~ 281 (1313)
+++...| ..-.++..+-.+|...|++.+|++.|+++.....+
T Consensus 87 ~~l~~dP------~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~ 128 (146)
T PF03704_consen 87 RALALDP------YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLRE 128 (146)
T ss_dssp HHHHHST------T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHhcCC------CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 9999876 77888999999999999999999999999877654
No 351
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.56 E-value=0.4 Score=54.39 Aligned_cols=159 Identities=18% Similarity=0.173 Sum_probs=114.0
Q ss_pred HHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCC
Q 000742 76 EVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPA 155 (1313)
Q Consensus 76 ~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~ 155 (1313)
......+++..|...+ .++-. ..+. .+...++..|..- .+...+..+|..+|+.+.+.
T Consensus 49 ~~~~~~~~~~~a~~~~-~~a~~----~~~~----~a~~~l~~~y~~g----~gv~~~~~~A~~~~~~~a~~--------- 106 (292)
T COG0790 49 AGSAYPPDYAKALKSY-EKAAE----LGDA----AALALLGQMYGAG----KGVSRDKTKAADWYRCAAAD--------- 106 (292)
T ss_pred ccccccccHHHHHHHH-HHhhh----cCCh----HHHHHHHHHHHhc----cCccccHHHHHHHHHHHhhc---------
Confidence 3344567888888888 66655 1221 5677888888643 33446688888888855544
Q ss_pred CCcchhhHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcC-------C
Q 000742 156 TSRSSFLKEYIDAHNNIGMLQME----LDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELR-------M 224 (1313)
Q Consensus 156 ~~~~~~~p~~~~~~~~la~~y~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g-------~ 224 (1313)
..+.+.+.+|.+|.. ..++.+|..+|.+|.+. ++.+. ..+.+.+|..|..-. +
T Consensus 107 --------g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~-------g~~~a-~~~~~~l~~~~~~g~~~~~~~~~ 170 (292)
T COG0790 107 --------GLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKL-------GNVEA-ALAMYRLGLAYLSGLQALAVAYD 170 (292)
T ss_pred --------ccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc-------CChhH-HHHHHHHHHHHHcChhhhcccHH
Confidence 446788889999987 45999999999999886 22221 455778888887752 2
Q ss_pred HHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHH
Q 000742 225 WDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYR----VQKYDEAILCYQKALNLAQ 280 (1313)
Q Consensus 225 ~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~kal~~~~ 280 (1313)
...|...|.++... ....+...+|.+|.. ..++++|..+|++|-+...
T Consensus 171 ~~~A~~~~~~aa~~--------~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 171 DKKALYLYRKAAEL--------GNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred HHhHHHHHHHHHHh--------cCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 33688888777766 467888999988865 4589999999999987654
No 352
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.52 E-value=0.011 Score=41.78 Aligned_cols=34 Identities=32% Similarity=0.522 Sum_probs=30.6
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHH
Q 000742 14 AYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALK 49 (1313)
Q Consensus 14 ~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~ 49 (1313)
+|++|++.+|....+ |+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a--~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEA--YNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHH--HHHHHHHHHHCcCHHhhcC
Confidence 378999999998888 9999999999999999963
No 353
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.50 E-value=4 Score=52.80 Aligned_cols=112 Identities=15% Similarity=0.080 Sum_probs=85.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHH
Q 000742 173 GMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGY 252 (1313)
Q Consensus 173 a~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~ 252 (1313)
..++...+.|++|+..|++.-.-++. ...-..+.+.+|.+...+-.-..--+.|.+|+..+....+.+..+.-|
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPG------RKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEY 555 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCC------cccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHH
Confidence 45566667788888888887666543 233456777888877765444333478889999888888888888999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHH
Q 000742 253 INLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALAS 290 (1313)
Q Consensus 253 ~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~ 290 (1313)
...|.+|.++|+|++-+++|.-|++..+..+.......
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (932)
T PRK13184 556 LGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRD 593 (932)
T ss_pred HhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHH
Confidence 99999999999999999999999999988776544433
No 354
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.44 E-value=2 Score=49.26 Aligned_cols=213 Identities=15% Similarity=0.096 Sum_probs=126.8
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhhCCCCC--chhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 000742 36 DILKNRGEYVEALKWFRIDYDVSVKYLPEKH--LLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACT 113 (1313)
Q Consensus 36 ~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~--~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~ 113 (1313)
.+-.....+..|.+...+++.......+.+. ...+..++=.+|....+|+.-+... +..-.+ |... ........+
T Consensus 107 dirkare~~~g~~~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lv-e~l~~~-p~~~-~~~~~~i~~ 183 (374)
T PF13281_consen 107 DIRKARERYSGARKELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLV-ETLEAL-PTCD-VANQHNIKF 183 (374)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHH-HHhhcc-Cccc-hhcchHHHH
Confidence 3333345555555666666665555545443 2456667777888889998877776 444333 2211 111223344
Q ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHH---------cCCHHH
Q 000742 114 QLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQME---------LDNLEE 184 (1313)
Q Consensus 114 ~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~---------~g~~~~ 184 (1313)
..|.++... +..|+.++|+..+..++.-.. . ..++++..+|.+|.. ...+++
T Consensus 184 ~yafALnRr-----n~~gdre~Al~il~~~l~~~~---~-----------~~~d~~gL~GRIyKD~~~~s~~~d~~~ldk 244 (374)
T PF13281_consen 184 QYAFALNRR-----NKPGDREKALQILLPVLESDE---N-----------PDPDTLGLLGRIYKDLFLESNFTDRESLDK 244 (374)
T ss_pred HHHHHHhhc-----ccCCCHHHHHHHHHHHHhccC---C-----------CChHHHHHHHHHHHHHHHHcCccchHHHHH
Confidence 555555542 123889999998888743311 1 225678888888754 234788
Q ss_pred HHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHH-----hchhhhHHHHHHHHHHH
Q 000742 185 AKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDI-IICKK-----IEHCQGEAKGYINLGEL 258 (1313)
Q Consensus 185 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal-~~~~~-----~~~~~~~~~~~~~la~~ 258 (1313)
|+.+|.++.++-+. ...-.|++.+....|...+...-.++.. .+... ..........+-.++.+
T Consensus 245 Ai~~Y~kgFe~~~~----------~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea 314 (374)
T PF13281_consen 245 AIEWYRKGFEIEPD----------YYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEA 314 (374)
T ss_pred HHHHHHHHHcCCcc----------ccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHH
Confidence 99999998887322 2233566666666665444433333332 22211 11223444556677788
Q ss_pred HHHhcCHHHHHHHHHHHHHHHH
Q 000742 259 HYRVQKYDEAILCYQKALNLAQ 280 (1313)
Q Consensus 259 ~~~~g~~~~A~~~~~kal~~~~ 280 (1313)
..-.|++++|++++++++++.+
T Consensus 315 ~vL~~d~~ka~~a~e~~~~l~~ 336 (374)
T PF13281_consen 315 SVLAGDYEKAIQAAEKAFKLKP 336 (374)
T ss_pred HHHcCCHHHHHHHHHHHhhcCC
Confidence 8889999999999999998854
No 355
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.37 E-value=0.0089 Score=60.27 Aligned_cols=84 Identities=21% Similarity=0.184 Sum_probs=64.6
Q ss_pred CcccEEEccCCCCChhHHHHHHHHHhcCCCccEEEccCCC-CChHHHHHHHHHhcCCCCceeEEEeecCC-CCHHHHHHH
Q 000742 1058 QESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNP-IMKEGANALASLLMNPQCCLKVLVLSKCQ-LGLAGVLQL 1135 (1313)
Q Consensus 1058 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-i~~~g~~~l 1135 (1313)
..++.+|-+++.|..+|+..+ ..++.|+.|.+.+|. +.|.++..++.... +|+.|+|++|. ||+.|+..
T Consensus 101 ~~IeaVDAsds~I~~eGle~L----~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~----~L~~L~lsgC~rIT~~GL~~- 171 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHL----RDLRSIKSLSLANCKYFDDWCLERLGGLAP----SLQDLDLSGCPRITDGGLAC- 171 (221)
T ss_pred ceEEEEecCCchHHHHHHHHH----hccchhhhheeccccchhhHHHHHhccccc----chheeeccCCCeechhHHHH-
Confidence 358888888888888887665 477888888888887 88888888877333 59999999884 88887644
Q ss_pred HHHhhcCCCccEEEccCC
Q 000742 1136 IKALSENDTLEELNLADN 1153 (1313)
Q Consensus 1136 ~~~l~~~~~L~~L~Ls~N 1153 (1313)
|..+++|+.|.|.+=
T Consensus 172 ---L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 172 ---LLKLKNLRRLHLYDL 186 (221)
T ss_pred ---HHHhhhhHHHHhcCc
Confidence 566778888887653
No 356
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=95.37 E-value=0.3 Score=56.67 Aligned_cols=90 Identities=13% Similarity=0.131 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH
Q 000742 350 SSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNV 429 (1313)
Q Consensus 350 ~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~ 429 (1313)
.+..|+...|...++.|......-. -....++|.+..+-|-...|-.++.+++.+. ..+...++.+|.+
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~-----~v~~v~la~~~~~~~~~~da~~~l~q~l~~~------~sepl~~~~~g~~ 685 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQ-----DVPLVNLANLLIHYGLHLDATKLLLQALAIN------SSEPLTFLSLGNA 685 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhh-----cccHHHHHHHHHHhhhhccHHHHHHHHHhhc------ccCchHHHhcchh
Confidence 3566777788888888876544322 2456789999999999999999999999875 2456678899999
Q ss_pred HHHcCCHHHHHHHHHHHHHHH
Q 000742 430 LDSNGDWAGALDAFQEGYRIA 450 (1313)
Q Consensus 430 y~~~g~~~~A~~~~~kAl~i~ 450 (1313)
|....+.++|++.|++|+...
T Consensus 686 ~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 686 YLALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHHHhhhHHHHHHHHHHHhcC
Confidence 999999999999999999863
No 357
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.29 E-value=0.012 Score=37.94 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=19.2
Q ss_pred cccCceecCCCCCCCHHHHHHHHH
Q 000742 1251 AKPLQLLDLSNNGFSTQAVKTLYC 1274 (1313)
Q Consensus 1251 ~~~L~~LdLs~N~l~~~~~~~l~~ 1274 (1313)
+++|+.|+|++|.|+++++..|++
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~~ 24 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALAN 24 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhCC
Confidence 578999999999999999999874
No 358
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.28 E-value=0.27 Score=49.10 Aligned_cols=69 Identities=19% Similarity=0.148 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000742 164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKK 241 (1313)
Q Consensus 164 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~ 241 (1313)
.+..+...++..+...|++++|+..+++++.. +|..-.+|..+-.+|...|++.+|+..|++......+
T Consensus 60 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~---------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~ 128 (146)
T PF03704_consen 60 LYLDALERLAEALLEAGDYEEALRLLQRALAL---------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLRE 128 (146)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc---------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 34567778888899999999999999999998 4556778999999999999999999999999888763
No 359
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.26 E-value=0.0048 Score=64.91 Aligned_cols=12 Identities=25% Similarity=0.224 Sum_probs=6.5
Q ss_pred CCCccEEEeCCC
Q 000742 972 ESTLAQLCIGYN 983 (1313)
Q Consensus 972 ~~~L~~L~Ls~n 983 (1313)
+++|+.|.+|.|
T Consensus 64 Lp~LkkL~lsdn 75 (260)
T KOG2739|consen 64 LPKLKKLELSDN 75 (260)
T ss_pred cchhhhhcccCC
Confidence 445555555555
No 360
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.26 E-value=5.9 Score=43.44 Aligned_cols=149 Identities=13% Similarity=-0.018 Sum_probs=108.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHH
Q 000742 131 YSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSR 210 (1313)
Q Consensus 131 ~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 210 (1313)
|++.+|....++.++- .|....++..--.+++..|+.+.-...+++.+.... .+.|-...
T Consensus 117 g~~h~a~~~wdklL~d---------------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn-----~dlp~~sY 176 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDD---------------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWN-----ADLPCYSY 176 (491)
T ss_pred ccccHHHHHHHHHHHh---------------CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccC-----CCCcHHHH
Confidence 6666666666666554 334455666677788888999888888888766522 34566778
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHH-
Q 000742 211 LHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALA- 289 (1313)
Q Consensus 211 ~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~- 289 (1313)
+.-.++......|-|++|.+..++++++.+ ....+...++.++...++++++.++..+.-...+. .+...
T Consensus 177 v~GmyaFgL~E~g~y~dAEk~A~ralqiN~------~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~---s~mlas 247 (491)
T KOG2610|consen 177 VHGMYAFGLEECGIYDDAEKQADRALQINR------FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ---SWMLAS 247 (491)
T ss_pred HHHHHHhhHHHhccchhHHHHHHhhccCCC------cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhh---hhHHHh
Confidence 888889999999999999999999999976 67778888999999999999999998876554432 11111
Q ss_pred ------HHHHHhHHHHHHHHHHHHH
Q 000742 290 ------SQIDQNIETVKKAIEVMDE 308 (1313)
Q Consensus 290 ------~~~~~~lg~~~~a~~~~~~ 308 (1313)
+..+..-+.+..|++.|+.
T Consensus 248 HNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 248 HNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hhhHHHHHhhhcccchhHHHHHHHH
Confidence 2234444566666666654
No 361
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.19 E-value=0.91 Score=51.88 Aligned_cols=190 Identities=14% Similarity=0.047 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHH---ccChHHHHHHHHHHHHHHHHHhc
Q 000742 27 EARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLR---LEHFKDALIYQVKKHLELAKDAS 103 (1313)
Q Consensus 27 ~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~---~g~~~~A~~~~~~kal~l~~~~~ 103 (1313)
.+.....+=..|....+|+.-++..+..-.+- .. +......+.+..|.++.+ .|+.++|+..+ ..++.-....
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p-~~-~~~~~~~i~~~yafALnRrn~~gdre~Al~il-~~~l~~~~~~- 215 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALP-TC-DVANQHNIKFQYAFALNRRNKPGDREKALQIL-LPVLESDENP- 215 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccC-cc-chhcchHHHHHHHHHHhhcccCCCHHHHHHHH-HHHHhccCCC-
Confidence 34455666667888888887777766543331 00 112235566788888888 89999999999 8765543222
Q ss_pred CHHHHHHHHHHHHHHHHHHhccC-CcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCH
Q 000742 104 DLVEQQRACTQLGRTYYEMFLRS-DDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNL 182 (1313)
Q Consensus 104 ~~~~~a~a~~~lg~~y~~l~~~~-~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~ 182 (1313)
+ ...+..+|++|..++..+ ..+....++|+..|.++.++-.. ...=.|++.++...|.-
T Consensus 216 ~----~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~----------------~Y~GIN~AtLL~~~g~~ 275 (374)
T PF13281_consen 216 D----PDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD----------------YYSGINAATLLMLAGHD 275 (374)
T ss_pred C----hHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc----------------ccchHHHHHHHHHcCCc
Confidence 1 246889999999887653 23456688999999999877311 11223455555555553
Q ss_pred HHHHHHHHHHH-hHhhhh--ccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742 183 EEAKKFLIRGL-EICNEE--EVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICK 240 (1313)
Q Consensus 183 ~~A~~~~~~al-~~~~~~--~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~ 240 (1313)
.+.....++.. .+..-. ............+-.++.+..-.|++++|++.++++++..+
T Consensus 276 ~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~ 336 (374)
T PF13281_consen 276 FETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKP 336 (374)
T ss_pred ccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Confidence 33332223322 111100 00112223445566778888889999999999999998744
No 362
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=95.17 E-value=3.8 Score=44.90 Aligned_cols=90 Identities=16% Similarity=0.055 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcC
Q 000742 355 AWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNG 434 (1313)
Q Consensus 355 ~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g 434 (1313)
.-...++.+++|...++..+.......+...+|..|+..|+|++|+++|+.+...+..-+=..-...++..+..|+...|
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 33456777788888887777777778888889999999999999999999997776655545555667778888888888
Q ss_pred CHHHHHHHHH
Q 000742 435 DWAGALDAFQ 444 (1313)
Q Consensus 435 ~~~~A~~~~~ 444 (1313)
+.+..+.+.-
T Consensus 233 ~~~~~l~~~l 242 (247)
T PF11817_consen 233 DVEDYLTTSL 242 (247)
T ss_pred CHHHHHHHHH
Confidence 8887766543
No 363
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.15 E-value=0.15 Score=57.03 Aligned_cols=136 Identities=18% Similarity=0.135 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHH-cCCHHHHHHHH
Q 000742 111 ACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQME-LDNLEEAKKFL 189 (1313)
Q Consensus 111 a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~-~g~~~~A~~~~ 189 (1313)
+|..+.+..... +..+.|...|.+|.+- .. ....+|...|.+.+. .++.+.|...|
T Consensus 3 v~i~~m~~~~r~--------~g~~~aR~vF~~a~~~----~~-----------~~~~vy~~~A~~E~~~~~d~~~A~~If 59 (280)
T PF05843_consen 3 VWIQYMRFMRRT--------EGIEAARKVFKRARKD----KR-----------CTYHVYVAYALMEYYCNKDPKRARKIF 59 (280)
T ss_dssp HHHHHHHHHHHH--------HHHHHHHHHHHHHHCC----CC-----------S-THHHHHHHHHHHHTCS-HHHHHHHH
T ss_pred HHHHHHHHHHHh--------CChHHHHHHHHHHHcC----CC-----------CCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 345555555554 6688888888888621 11 124678888888666 56666699999
Q ss_pred HHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHH
Q 000742 190 IRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAI 269 (1313)
Q Consensus 190 ~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 269 (1313)
+.+++.+.. ....|......+...++.+.|...|++++...+. .......|......-...|+.+...
T Consensus 60 e~glk~f~~---------~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~---~~~~~~iw~~~i~fE~~~Gdl~~v~ 127 (280)
T PF05843_consen 60 ERGLKKFPS---------DPDFWLEYLDFLIKLNDINNARALFERAISSLPK---EKQSKKIWKKFIEFESKYGDLESVR 127 (280)
T ss_dssp HHHHHHHTT----------HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSC---HHHCHHHHHHHHHHHHHHS-HHHHH
T ss_pred HHHHHHCCC---------CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCc---hhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999998765 3455666667888999999999999999887431 1114457777777788889999999
Q ss_pred HHHHHHHHHHHH
Q 000742 270 LCYQKALNLAQS 281 (1313)
Q Consensus 270 ~~~~kal~~~~~ 281 (1313)
..++++.+..+.
T Consensus 128 ~v~~R~~~~~~~ 139 (280)
T PF05843_consen 128 KVEKRAEELFPE 139 (280)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHhhh
Confidence 998888887765
No 364
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.09 E-value=0.015 Score=58.62 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=9.1
Q ss_pred cCEEEecCCCCCHHHHHHHH
Q 000742 860 VALLDLSHNLLGNGTMEKLQ 879 (1313)
Q Consensus 860 L~~L~Ls~n~l~~~~~~~L~ 879 (1313)
++.+|-++..|..+|+..|.
T Consensus 103 IeaVDAsds~I~~eGle~L~ 122 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLR 122 (221)
T ss_pred EEEEecCCchHHHHHHHHHh
Confidence 44444444444444444443
No 365
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=95.01 E-value=0.023 Score=64.91 Aligned_cols=101 Identities=15% Similarity=0.166 Sum_probs=88.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhH
Q 000742 169 HNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGE 248 (1313)
Q Consensus 169 ~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~ 248 (1313)
.-.-|..++.-++|+.|+..|.+|+++ ++..+..+.+.+.+|.+.+++..|+..+.+|++..+ ..
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~l---------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP------~~ 71 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIEL---------DPNCAIYFANRALAHLKVESFGGALHDALKAIELDP------TY 71 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhc---------CCcceeeechhhhhheeechhhhHHHHHHhhhhcCc------hh
Confidence 334455566779999999999999998 455677888999999999999999999999999976 88
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccC
Q 000742 249 AKGYINLGELHYRVQKYDEAILCYQKALNLAQSMED 284 (1313)
Q Consensus 249 ~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~ 284 (1313)
..+|+..|.++...+++.+|...|++...+.|...+
T Consensus 72 ~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~ 107 (476)
T KOG0376|consen 72 IKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPD 107 (476)
T ss_pred hheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHH
Confidence 999999999999999999999999999999886554
No 366
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=94.89 E-value=18 Score=47.08 Aligned_cols=101 Identities=14% Similarity=0.039 Sum_probs=78.3
Q ss_pred hhhHHHHHHHHHHHHHhcCcHHHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccC
Q 000742 5 EMQMSEAKRAYRSAKEEGNRQEEA-RWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEH 83 (1313)
Q Consensus 5 ~~~~~~A~~~l~~a~~~~~~~~~a-~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 83 (1313)
.+.|+.|+..|++....-|...+. ++.+.+|.....+-.-..--+.|.+|+....+..+.+..+--|...|.+|.++|+
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (932)
T PRK13184 488 EKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKALVYQRLGE 567 (932)
T ss_pred hHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHHHHHHHhhh
Confidence 467999999999999887765443 4577888877655333333367777777777776777777778889999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHH
Q 000742 84 FKDALIYQVKKHLELAKDASDLV 106 (1313)
Q Consensus 84 ~~~A~~~~~~kal~l~~~~~~~~ 106 (1313)
|++-++.+ ..|++.+++.+...
T Consensus 568 ~~~~~~~~-~~~~~~~~~~~~~~ 589 (932)
T PRK13184 568 YNEEIKSL-LLALKRYSQHPEIS 589 (932)
T ss_pred HHHHHHHH-HHHHHhcCCCCccH
Confidence 99999999 99999988877543
No 367
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.86 E-value=0.018 Score=40.76 Aligned_cols=32 Identities=31% Similarity=0.455 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHH
Q 000742 232 IEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAI 269 (1313)
Q Consensus 232 ~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 269 (1313)
|++|+++.| ..+.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P------~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNP------NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCC------CCHHHHHHHHHHHHHCcCHHhhc
Confidence 678888866 88889999999999999999886
No 368
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=94.57 E-value=0.083 Score=57.57 Aligned_cols=95 Identities=18% Similarity=0.256 Sum_probs=53.6
Q ss_pred CCCcccEEEccCCC-CChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhcCCCCceeEEEeecCCCCHHHHHH
Q 000742 1056 RAQESVKLDLSYCG-LESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQ 1134 (1313)
Q Consensus 1056 ~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~ 1134 (1313)
+-+.++..+|+++. |...-...+..++..++..+...|.+-..++..+.+++.++..+. +|++|++++|-|++.|+..
T Consensus 196 nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~-sl~slnvesnFItg~gi~a 274 (353)
T KOG3735|consen 196 NDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENK-SLTSLNVESNFITGLGIMA 274 (353)
T ss_pred CCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcc-hhhheeccccccccHHHHH
Confidence 33455555555544 444444455555555555666666555565555556666555422 4666666666666666666
Q ss_pred HHHHhhcCCCccEEEcc
Q 000742 1135 LIKALSENDTLEELNLA 1151 (1313)
Q Consensus 1135 l~~~l~~~~~L~~L~Ls 1151 (1313)
+..+|..+.+|.+|-..
T Consensus 275 ~~~al~~n~tl~el~~d 291 (353)
T KOG3735|consen 275 LLRALQSNKSLTELKND 291 (353)
T ss_pred HHHHHhccchhhHhhhh
Confidence 66666666666555443
No 369
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.46 E-value=0.03 Score=60.94 Aligned_cols=88 Identities=18% Similarity=0.215 Sum_probs=79.2
Q ss_pred HHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHH
Q 000742 177 MELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLG 256 (1313)
Q Consensus 177 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la 256 (1313)
+..|.+++|++.|..|+++ .+..+..|...+.++..++++..|+..+..|+++.+ +.+..|-..|
T Consensus 125 ln~G~~~~ai~~~t~ai~l---------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~------Dsa~~ykfrg 189 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIEL---------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINP------DSAKGYKFRG 189 (377)
T ss_pred hcCcchhhhhccccccccc---------CCchhhhcccccceeeeccCCchhhhhhhhhhccCc------ccccccchhh
Confidence 4458899999999999988 555788999999999999999999999999999976 7788888899
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHH
Q 000742 257 ELHYRVQKYDEAILCYQKALNLA 279 (1313)
Q Consensus 257 ~~~~~~g~~~~A~~~~~kal~~~ 279 (1313)
.++..+|++++|..+++.|.++.
T Consensus 190 ~A~rllg~~e~aa~dl~~a~kld 212 (377)
T KOG1308|consen 190 YAERLLGNWEEAAHDLALACKLD 212 (377)
T ss_pred HHHHHhhchHHHHHHHHHHHhcc
Confidence 99999999999999999998875
No 370
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.45 E-value=0.011 Score=62.15 Aligned_cols=40 Identities=15% Similarity=0.119 Sum_probs=18.5
Q ss_pred hcCCCCcEEEeecCCCCHH-HHHHHHHHHhcCCCccEEEeCCCC
Q 000742 942 KNCKVLYSLNIENCSITSR-TIQKVADALGAESTLAQLCIGYNS 984 (1313)
Q Consensus 942 ~~~~~L~~L~L~~n~i~~~-~~~~l~~~l~~~~~L~~L~Ls~n~ 984 (1313)
..+++|+.|.++.|.+... ++..++ ..+++|++|+|+.|.
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~---e~~P~l~~l~ls~Nk 102 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLA---EKAPNLKVLNLSGNK 102 (260)
T ss_pred CCcchhhhhcccCCcccccccceehh---hhCCceeEEeecCCc
Confidence 3445566666666622211 112221 234566666666665
No 371
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=94.41 E-value=0.4 Score=47.42 Aligned_cols=162 Identities=14% Similarity=0.172 Sum_probs=105.5
Q ss_pred ccChHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcc
Q 000742 81 LEHFKDALI-YQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRS 159 (1313)
Q Consensus 81 ~g~~~~A~~-~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~ 159 (1313)
+|+|-++++ .| ++|.++++.+-+......+.+.+|..+..- ..++.++...|+.+|..|-..
T Consensus 40 LgdYlEgi~knF-~~A~kv~K~nCden~y~kSCyKyG~y~~~G---KgG~~~~l~~a~r~~~~aC~~------------- 102 (248)
T KOG4014|consen 40 LGDYLEGIQKNF-QAAVKVFKKNCDENSYPKSCYKYGMYMLAG---KGGDDASLSKAIRPMKIACDA------------- 102 (248)
T ss_pred HHHHHHHHHHHH-HHHHHHHHhcccccCCcHHHHHhhhhhhcc---cCCCccCHHHHHHHHHHHhcc-------------
Confidence 344445543 44 666666676656555667788888776532 234568899999999988764
Q ss_pred hhhHHHHHHHHHHHHHHHHc-----C--CHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHH--------------
Q 000742 160 SFLKEYIDAHNNIGMLQMEL-----D--NLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNV-------------- 218 (1313)
Q Consensus 160 ~~~p~~~~~~~~la~~y~~~-----g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~-------------- 218 (1313)
..+.+-.++|.++..- + +..+|.+|+.+|-.+-. +.+-++|...
T Consensus 103 ----n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~-----------~~aCf~LS~m~~~g~~k~~t~ap~ 167 (248)
T KOG4014|consen 103 ----NIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLED-----------GEACFLLSTMYMGGKEKFKTNAPG 167 (248)
T ss_pred ----CCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCC-----------chHHHHHHHHHhccchhhcccCCC
Confidence 3356777777776542 2 37889999999876621 1233333333
Q ss_pred ----------HHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHc
Q 000742 219 ----------YMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYR----VQKYDEAILCYQKALNLAQSM 282 (1313)
Q Consensus 219 ----------y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~kal~~~~~~ 282 (1313)
+....+.++|.++.-+|-++ ....+..++...|.. -++-++|..|-.+|.++....
T Consensus 168 ~g~p~~~~~~~~~~kDMdka~qfa~kACel--------~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~ 237 (248)
T KOG4014|consen 168 EGKPLDRAELGSLSKDMDKALQFAIKACEL--------DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEEL 237 (248)
T ss_pred CCCCcchhhhhhhhHhHHHHHHHHHHHHhc--------CChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHH
Confidence 33345677777777777666 556777777777753 246778888888888877653
No 372
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.34 E-value=0.026 Score=36.30 Aligned_cols=21 Identities=43% Similarity=0.597 Sum_probs=8.8
Q ss_pred CCccEEEccCCCCChHHHHHH
Q 000742 1086 HGILELNLGGNPIMKEGANAL 1106 (1313)
Q Consensus 1086 ~~L~~L~Ls~N~i~~~~~~~l 1106 (1313)
++|++|+|++|.|++.|+..|
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 344444444444444444444
No 373
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.33 E-value=10 Score=43.29 Aligned_cols=194 Identities=8% Similarity=-0.057 Sum_probs=119.2
Q ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcc
Q 000742 204 DDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSME 283 (1313)
Q Consensus 204 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~ 283 (1313)
+-.......+..+.++...+++..|...+++..-.+.+..+......+...++.++.+-+..-.+..+.-+++....+..
T Consensus 268 d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey~ 347 (482)
T KOG4322|consen 268 DYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKGCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEYS 347 (482)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHhc
Confidence 33445566677888888888999998888888877776666667778888888888888877777777777766655543
Q ss_pred ChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742 284 DEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYA 363 (1313)
Q Consensus 284 ~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~ 363 (1313)
....... ... .++......|..++|....
T Consensus 348 ldyl~a~-------------~~L--------------------------------------~LAl~~L~LG~pk~Al~lL 376 (482)
T KOG4322|consen 348 LDYLEAN-------------ENL--------------------------------------DLALEHLALGSPKAALPLL 376 (482)
T ss_pred cchhhhh-------------chH--------------------------------------HHHHHHHHcCChHHHHHHH
Confidence 3221110 000 1111111222333333444
Q ss_pred HHHHHHHHHhCCchhhHHH-------HHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCH
Q 000742 364 KRKKRIASELCDKGKLSDS-------FLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDW 436 (1313)
Q Consensus 364 ~~a~~i~~~~~~~~~~a~~-------~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~ 436 (1313)
+.+.......+.-...+.+ +..-+..+ ...+.+.+..++++|-.+..+.+-+.....+++-+|..|...|+.
T Consensus 377 h~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~~~L~~A~~~f~kL~~he~ildv~yf~A~~yn~lGd~ 455 (482)
T KOG4322|consen 377 HTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFPRYLDLAQSIFYKLGCHEKILDVTYFSAYQYNHLGDS 455 (482)
T ss_pred HhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHhhcCc
Confidence 4443332222111111111 11112222 566788888889998888888888888888899999999998875
Q ss_pred H---HHHHHHHHHHHH
Q 000742 437 A---GALDAFQEGYRI 449 (1313)
Q Consensus 437 ~---~A~~~~~kAl~i 449 (1313)
. ++...|+|+...
T Consensus 456 ~eRn~~AslFrk~~~~ 471 (482)
T KOG4322|consen 456 PERNLLASLFRKAWRY 471 (482)
T ss_pred hHHHHHHHHHHHHHHh
Confidence 4 566666666554
No 374
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.15 E-value=0.11 Score=38.76 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 000742 421 LAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEA 453 (1313)
Q Consensus 421 ~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~ 453 (1313)
.++.++|.+|..+|++++|..++++++++.++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 457788888888888888888888888877664
No 375
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.03 E-value=15 Score=50.91 Aligned_cols=70 Identities=17% Similarity=0.102 Sum_probs=60.9
Q ss_pred CchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000742 375 DKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVE 452 (1313)
Q Consensus 375 ~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~ 452 (1313)
.....+..|...|++-...|+++.|-.+.-+|.+. ..+.++...|+.....|+-..|+..+++.++....
T Consensus 1665 ~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~--------r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1665 LKSRLGECWLQSARIARLAGHLQRAQNALLNAKES--------RLPEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred ccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc--------ccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 35567899999999999999999999999888854 25677899999999999999999999999977643
No 376
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.99 E-value=0.11 Score=38.63 Aligned_cols=36 Identities=22% Similarity=0.364 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCC
Q 000742 28 ARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLP 63 (1313)
Q Consensus 28 a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~ 63 (1313)
+.++..+|.+|...|++++|+.++++++.+..+..+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G 37 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLG 37 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhc
Confidence 456899999999999999999999999999876543
No 377
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=93.96 E-value=1.1 Score=44.56 Aligned_cols=167 Identities=20% Similarity=0.246 Sum_probs=105.1
Q ss_pred HHHHHHHHHHhCCHHHHH-HHHHHHHHHHHhhCCCCCchhHHHHHHHHHHH-----ccChHHHHHHHHHHHHHHHHHhcC
Q 000742 31 ANVIGDILKNRGEYVEAL-KWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLR-----LEHFKDALIYQVKKHLELAKDASD 104 (1313)
Q Consensus 31 ~~~lg~~y~~~g~~~eAl-~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~-----~g~~~~A~~~~~~kal~l~~~~~~ 104 (1313)
++.||..+ +++ +.|+.|..+.+..-++...+...+.+|..+.. .++...|+.++ +.+-+ .++
T Consensus 37 C~lLgdYl-------Egi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~-~~aC~----~n~ 104 (248)
T KOG4014|consen 37 CQLLGDYL-------EGIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPM-KIACD----ANI 104 (248)
T ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHH-HHHhc----cCC
Confidence 66666655 333 35566666666666666778888888887653 35778888888 66655 222
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHH-------
Q 000742 105 LVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQM------- 177 (1313)
Q Consensus 105 ~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~------- 177 (1313)
..+..++|.++..- .......-+.++|..|+.+|-++ ....+-++|...|.
T Consensus 105 ----~~aC~~~gLl~~~g-~~~r~~dpd~~Ka~~y~traCdl-----------------~~~~aCf~LS~m~~~g~~k~~ 162 (248)
T KOG4014|consen 105 ----PQACRYLGLLHWNG-EKDRKADPDSEKAERYMTRACDL-----------------EDGEACFLLSTMYMGGKEKFK 162 (248)
T ss_pred ----HHHHhhhhhhhccC-cCCccCCCCcHHHHHHHHHhccC-----------------CCchHHHHHHHHHhccchhhc
Confidence 24566777776542 22222223477899999888655 12233333333333
Q ss_pred -----------------HcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHH
Q 000742 178 -----------------ELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMEL----RMWDKSREHIEQDI 236 (1313)
Q Consensus 178 -----------------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~----g~~~~A~~~~~kal 236 (1313)
-..+.++|.++..+|-++- ...+-.|+.+.|..- ++.++|..|-++|.
T Consensus 163 t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~-----------~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~ 231 (248)
T KOG4014|consen 163 TNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELD-----------IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAK 231 (248)
T ss_pred ccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcC-----------ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHH
Confidence 3367788888888887761 234555666666542 47899999999999
Q ss_pred HHHHHh
Q 000742 237 IICKKI 242 (1313)
Q Consensus 237 ~~~~~~ 242 (1313)
++.+..
T Consensus 232 e~~~e~ 237 (248)
T KOG4014|consen 232 EIMEEL 237 (248)
T ss_pred HHHHHH
Confidence 998754
No 378
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.91 E-value=3.6 Score=44.06 Aligned_cols=138 Identities=12% Similarity=0.129 Sum_probs=93.2
Q ss_pred HccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcc
Q 000742 80 RLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRS 159 (1313)
Q Consensus 80 ~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~ 159 (1313)
....-++-++-+ .+.++-....+...+.+.++.++|..|.+. ++.+.+.+...+.+.-+-..+-.-
T Consensus 87 l~kkneeki~El-de~i~~~eedngE~e~~ea~~n~aeyY~qi--------~D~~ng~~~~~~~~~~a~stg~Ki----- 152 (412)
T COG5187 87 LLKKNEEKIEEL-DERIREKEEDNGETEGSEADRNIAEYYCQI--------MDIQNGFEWMRRLMRDAMSTGLKI----- 152 (412)
T ss_pred HHHhhHHHHHHH-HHHHHHHhhcccchHHHHHHHHHHHHHHHH--------hhhhhHHHHHHHHHHHHHhcccch-----
Confidence 334455566667 677766666655677889999999999998 899999998888877655544332
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000742 160 SFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIIC 239 (1313)
Q Consensus 160 ~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~ 239 (1313)
+..-....+|.+|..+.-.++.++..... .++ +++....-+.....|.......+|.+|-..+-..+.-+
T Consensus 153 ----Dv~l~kiRlg~~y~d~~vV~e~lE~~~~~---iEk---GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF 222 (412)
T COG5187 153 ----DVFLCKIRLGLIYGDRKVVEESLEVADDI---IEK---GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTF 222 (412)
T ss_pred ----hhHHHHHHHHHhhccHHHHHHHHHHHHHH---HHh---CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 44455566777775554444444444333 333 45555566666677777788888888888887777666
Q ss_pred HH
Q 000742 240 KK 241 (1313)
Q Consensus 240 ~~ 241 (1313)
..
T Consensus 223 ~S 224 (412)
T COG5187 223 ES 224 (412)
T ss_pred cc
Confidence 54
No 379
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.85 E-value=19 Score=43.16 Aligned_cols=102 Identities=11% Similarity=0.133 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHH
Q 000742 31 ANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQR 110 (1313)
Q Consensus 31 ~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~ 110 (1313)
+.+-|.-.+...+|..|+++|...+...+........+.....++.||..+.+.+.|.+++ ++|-+..|+..-.
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~-~EAE~~d~~~~l~----- 430 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVY-QEAEEVDRQSPLC----- 430 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHhhccccHHH-----
Confidence 3455677788999999999999999888665444556888899999999999999999999 9998877655321
Q ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHH
Q 000742 111 ACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLA 147 (1313)
Q Consensus 111 a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~ 147 (1313)
...+-.+.... +.-++|+....+.....
T Consensus 431 -q~~~~~~~~~E--------~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 431 -QLLMLQSFLAE--------DKSEEALTCLQKIKSSE 458 (872)
T ss_pred -HHHHHHHHHHh--------cchHHHHHHHHHHHhhh
Confidence 12222222222 67778887777665554
No 380
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=93.82 E-value=0.73 Score=51.62 Aligned_cols=97 Identities=8% Similarity=0.072 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhchhh
Q 000742 168 AHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYME-LRMWDKSREHIEQDIIICKKIEHCQ 246 (1313)
Q Consensus 168 ~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~-~g~~~~A~~~~~kal~~~~~~~~~~ 246 (1313)
+|..+.....+.+..+.|..+|.+|.+. ......+|...|.+.+. .++.+.|...|+.+++.++
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~---------~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~------ 67 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKD---------KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP------ 67 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC---------CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcC---------CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC------
Confidence 4555666666677799999999999743 22234678888888666 5677779999999999877
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 000742 247 GEAKGYINLGELHYRVQKYDEAILCYQKALNLA 279 (1313)
Q Consensus 247 ~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~ 279 (1313)
.....+......+...++.+.|...|++++...
T Consensus 68 ~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l 100 (280)
T PF05843_consen 68 SDPDFWLEYLDFLIKLNDINNARALFERAISSL 100 (280)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTS
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc
Confidence 566667777788899999999999999998763
No 381
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.74 E-value=15 Score=41.62 Aligned_cols=178 Identities=15% Similarity=0.015 Sum_probs=113.6
Q ss_pred HHHHHHHHHHH--HHHhCCHHHHHHHHHHHHHHHHhhCCCC----CchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHH
Q 000742 27 EARWANVIGDI--LKNRGEYVEALKWFRIDYDVSVKYLPEK----HLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAK 100 (1313)
Q Consensus 27 ~a~~~~~lg~~--y~~~g~~~eAl~~~~~al~~~~~~~~~~----~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~ 100 (1313)
+..+|..+-.. ...+.+|.+|.+.-+..+.-.... ... -.+..|+.+..+|...|+...-...+ ..-+..+.
T Consensus 123 Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~-nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l-~~~lrtAt 200 (493)
T KOG2581|consen 123 EIEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQ-NRRTLDLIAAKLYFYLYLSYELEGRLADIRSFL-HALLRTAT 200 (493)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc-chhhHHHHHHHHHHHHHHHHHhhcchHHHHHHH-HHHHHHhh
Confidence 44444443333 345688999988877655432111 111 13678889999999999977766666 66666665
Q ss_pred HhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcC
Q 000742 101 DASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELD 180 (1313)
Q Consensus 101 ~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g 180 (1313)
--.+...++...+.+-+.|..- +.|++|.+...++. -+.. .....++...+.+|.+..-++
T Consensus 201 Lrhd~e~qavLiN~LLr~yL~n--------~lydqa~~lvsK~~-------~pe~----~snne~ARY~yY~GrIkaiql 261 (493)
T KOG2581|consen 201 LRHDEEGQAVLINLLLRNYLHN--------KLYDQADKLVSKSV-------YPEA----ASNNEWARYLYYLGRIKAIQL 261 (493)
T ss_pred hcCcchhHHHHHHHHHHHHhhh--------HHHHHHHHHhhccc-------Cccc----cccHHHHHHHHHHhhHHHhhc
Confidence 5556677777778888888765 77777766554432 1110 112378999999999999999
Q ss_pred CHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHH
Q 000742 181 NLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKS 228 (1313)
Q Consensus 181 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A 228 (1313)
+|..|.+++-+|+..++.. .--...-.+...+-.+-..+|++.+-
T Consensus 262 dYssA~~~~~qa~rkapq~---~alGf~q~v~k~~ivv~ll~geiPer 306 (493)
T KOG2581|consen 262 DYSSALEYFLQALRKAPQH---AALGFRQQVNKLMIVVELLLGEIPER 306 (493)
T ss_pred chhHHHHHHHHHHHhCcch---hhhhHHHHHHHHHHHHHHHcCCCcch
Confidence 9999999999999987652 11111222333334444556666544
No 382
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=93.61 E-value=0.33 Score=41.19 Aligned_cols=73 Identities=18% Similarity=0.228 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcC
Q 000742 28 ARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASD 104 (1313)
Q Consensus 28 a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~ 104 (1313)
++....-|.-++...+.++|+..++++++.... .+....++-.+..+|...|+|.+++++. .+-++++...++
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~---~~~rf~~lG~l~qA~~e~Gkyr~~L~fA-~~Q~~~A~eled 78 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITD---REDRFRVLGYLIQAHMEWGKYREMLAFA-LQQLEIAEELED 78 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHccC
Confidence 444556777788999999999999999987743 3456788889999999999999999999 888888877654
No 383
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=93.60 E-value=0.072 Score=61.03 Aligned_cols=91 Identities=18% Similarity=0.079 Sum_probs=80.5
Q ss_pred hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccCh
Q 000742 5 EMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHF 84 (1313)
Q Consensus 5 ~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~ 84 (1313)
...|+.|+..|.+|+++++..... +...+.++...++|..|+.-+.+|++..+. ...+|+..|.+...++++
T Consensus 17 ~~~fd~avdlysKaI~ldpnca~~--~anRa~a~lK~e~~~~Al~Da~kaie~dP~------~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNCAIY--FANRALAHLKVESFGGALHDALKAIELDPT------YIKAYVRRGTAVMALGEF 88 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcceee--echhhhhheeechhhhHHHHHHhhhhcCch------hhheeeeccHHHHhHHHH
Confidence 367999999999999999986554 678889999999999999999999998744 389999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 000742 85 KDALIYQVKKHLELAKDASD 104 (1313)
Q Consensus 85 ~~A~~~~~~kal~l~~~~~~ 104 (1313)
.+|+..| ++...+.|+..+
T Consensus 89 ~~A~~~l-~~~~~l~Pnd~~ 107 (476)
T KOG0376|consen 89 KKALLDL-EKVKKLAPNDPD 107 (476)
T ss_pred HHHHHHH-HHhhhcCcCcHH
Confidence 9999999 999998887654
No 384
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=93.56 E-value=0.76 Score=39.10 Aligned_cols=71 Identities=15% Similarity=0.073 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh
Q 000742 383 FLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLP 456 (1313)
Q Consensus 383 ~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~ 456 (1313)
...-|.-++...+.++|+..++++++... +.++.-.++-.+..+|...|+|.+++++--.-++++++.++|
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~---~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled~ 79 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKIT---DREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELEDP 79 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 34456666788999999999999997544 455667778889999999999999999999999999988765
No 385
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=93.50 E-value=0.11 Score=56.73 Aligned_cols=90 Identities=28% Similarity=0.249 Sum_probs=45.9
Q ss_pred cceEEEccCC-CCCHHHHHHHHhcccCCCCcCEEEecCCCCChhHHHHHHHHHhcCCCCcEEEeecCCCCHHHHHHHHHH
Q 000742 890 VDLTLDLHCN-RFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADA 968 (1313)
Q Consensus 890 ~l~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 968 (1313)
.+..++|+++ +|....+..++..+..++..+...|-+.+.++...-+++.++..|++|++|++++|-|++.|+-.+..+
T Consensus 199 ~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFItg~gi~a~~~a 278 (353)
T KOG3735|consen 199 GLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFITGLGIMALLRA 278 (353)
T ss_pred CceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccccHHHHHHHHH
Confidence 3444444444 234444444555554555555555555555555555555555555555555555555555555555555
Q ss_pred HhcCCCccEEE
Q 000742 969 LGAESTLAQLC 979 (1313)
Q Consensus 969 l~~~~~L~~L~ 979 (1313)
|..+.+|+.|.
T Consensus 279 l~~n~tl~el~ 289 (353)
T KOG3735|consen 279 LQSNKSLTELK 289 (353)
T ss_pred HhccchhhHhh
Confidence 55555554443
No 386
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=93.04 E-value=4.5 Score=44.24 Aligned_cols=129 Identities=16% Similarity=0.134 Sum_probs=80.3
Q ss_pred hhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChH
Q 000742 6 MQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFK 85 (1313)
Q Consensus 6 ~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~ 85 (1313)
..+++-.+..+.|.+.....+...++...|..|.+.|+-+.|++++++..+.....+..-+..-....+|..|. +.+
T Consensus 82 eki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~---D~~ 158 (393)
T KOG0687|consen 82 EKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYL---DHD 158 (393)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhc---cHH
Confidence 34445555556666665556666779999999999999999999999988877555333334444556666664 455
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHH
Q 000742 86 DALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKL 146 (1313)
Q Consensus 86 ~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l 146 (1313)
--.+.. ++|-.+..+-+|+...-+.-..-|...... .++.+|-..|-.++.-
T Consensus 159 lV~~~i-ekak~liE~GgDWeRrNRlKvY~Gly~msv--------R~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 159 LVTESI-EKAKSLIEEGGDWERRNRLKVYQGLYCMSV--------RNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHH-HHHHHHHHhCCChhhhhhHHHHHHHHHHHH--------HhHHHHHHHHHHHccc
Confidence 555556 777777777777654333222233333322 4555555555544443
No 387
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=92.94 E-value=7.1 Score=42.79 Aligned_cols=136 Identities=15% Similarity=0.116 Sum_probs=98.8
Q ss_pred CHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 000742 43 EYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEM 122 (1313)
Q Consensus 43 ~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l 122 (1313)
.-++-++-+++.++-..+..++....+++...|..|.+.|+-+.|++.+ .+..+-.-..+...........+|..|..
T Consensus 79 ~neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~-~~t~~ktvs~g~kiDVvf~~iRlglfy~D- 156 (393)
T KOG0687|consen 79 ANEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEAL-RKTYEKTVSLGHKIDVVFYKIRLGLFYLD- 156 (393)
T ss_pred hhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHH-HHHHHHHhhcccchhhHHHHHHHHHhhcc-
Confidence 3455677788888888777677777899999999999999999999999 99888877777776667777888888853
Q ss_pred hccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhh
Q 000742 123 FLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEE 199 (1313)
Q Consensus 123 ~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~ 199 (1313)
.+--.+..++|-.+.++-++-. ..-..-...|.......+|.+|-..|-.++..+...
T Consensus 157 ----------~~lV~~~iekak~liE~GgDWe---------RrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~ 214 (393)
T KOG0687|consen 157 ----------HDLVTESIEKAKSLIEEGGDWE---------RRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTSY 214 (393)
T ss_pred ----------HHHHHHHHHHHHHHHHhCCChh---------hhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccce
Confidence 3444444555555555544432 112233445566667789999999999988877664
No 388
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=92.83 E-value=9.8 Score=41.22 Aligned_cols=188 Identities=13% Similarity=0.079 Sum_probs=102.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHH-ccChHHHHHHHHHHHHHHHHHhcCHHHHH
Q 000742 31 ANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLR-LEHFKDALIYQVKKHLELAKDASDLVEQQ 109 (1313)
Q Consensus 31 ~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~-~g~~~~A~~~~~~kal~l~~~~~~~~~~a 109 (1313)
+..+|.++.+.|+|++++.+.++++...+. ...+=...++.+|.. .|....+...+ ..........+...
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~e-----Lt~eERnLlsvayKn~i~~~R~s~R~l-~~~e~~~~~~~~~~--- 74 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPE-----LTEEERNLLSVAYKNVIGSRRASWRIL-SSIEQKEENKGNEK--- 74 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS--------HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTTTTHH---
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCC-----CCHHHHHHHHHHHHhccccchHHHHhh-hhHhhhhcccchhH---
Confidence 457899999999999999999999877321 113334455555533 24444454444 33333222221111
Q ss_pred HHHHHHHHHHHHHhccCCcchhhHH-HHHHHHHHHHHHHHHhccCCC---CCcchhhHHHHHHHHHHHHHHHH---cCCH
Q 000742 110 RACTQLGRTYYEMFLRSDDDHYSIR-NAKKYFKSAMKLAQTLKENPA---TSRSSFLKEYIDAHNNIGMLQME---LDNL 182 (1313)
Q Consensus 110 ~a~~~lg~~y~~l~~~~~~~~~~~~-~A~~~~~~Al~l~~~~~~~~~---~~~~~~~p~~~~~~~~la~~y~~---~g~~ 182 (1313)
...+..-|. .+.+ +=.......+.+.+..--+.. ..+..|....+..|..++.+... ..-.
T Consensus 75 --~~~~i~~yk----------~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~ 142 (236)
T PF00244_consen 75 --QVKLIKDYK----------KKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAA 142 (236)
T ss_dssp --HHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHH
T ss_pred --HHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHH
Confidence 112222222 1122 223445556666555221111 11112222333444444443321 1124
Q ss_pred HHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHH
Q 000742 183 EEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVY-MELRMWDKSREHIEQDIIICK 240 (1313)
Q Consensus 183 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y-~~~g~~~~A~~~~~kal~~~~ 240 (1313)
++|...|++|++++... ....+|.......|.+..| ..+|+.++|++..++|+..+-
T Consensus 143 ~~a~~aY~~A~~~a~~~-L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKE-LPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHHHHHH-SCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcc-cCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 78999999999998873 2355666666666776655 558999999999999887764
No 389
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=92.65 E-value=7.5 Score=46.20 Aligned_cols=83 Identities=13% Similarity=0.153 Sum_probs=48.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHH------HHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChh
Q 000742 213 HNLGNVYMELRMWDKSREHIEQ------DIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDED 286 (1313)
Q Consensus 213 ~~lg~~y~~~g~~~~A~~~~~k------al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~ 286 (1313)
..+|.++...|++.+|.+.|.+ |++++. ..-++.+++-|...|..++-....++--+.+.....+.
T Consensus 636 iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyT--------DlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk 707 (1081)
T KOG1538|consen 636 LLLADVFAYQGKFHEAAKLFKRSGHENRALEMYT--------DLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK 707 (1081)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHH--------HHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH
Confidence 3567778888888888888865 344432 22345556666667776666666666655555554433
Q ss_pred HHHHHHHHhHHHHHHHHH
Q 000742 287 ALASQIDQNIETVKKAIE 304 (1313)
Q Consensus 287 ~~~~~~~~~lg~~~~a~~ 304 (1313)
. ++..+...|+..+|+.
T Consensus 708 a-AAEmLiSaGe~~KAi~ 724 (1081)
T KOG1538|consen 708 A-AAEMLISAGEHVKAIE 724 (1081)
T ss_pred H-HHHHhhcccchhhhhh
Confidence 2 2334444455444443
No 390
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=92.33 E-value=4.1 Score=48.50 Aligned_cols=176 Identities=10% Similarity=-0.094 Sum_probs=103.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccCh-------HHHHHHHHHHHHHHHHHh-
Q 000742 31 ANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHF-------KDALIYQVKKHLELAKDA- 102 (1313)
Q Consensus 31 ~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~-------~~A~~~~~~kal~l~~~~- 102 (1313)
...+|+.++..|+|+-|...|+.+..-+.........+.++...|.+....+.. ++...++ +.|+..+...
T Consensus 211 ~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~l-e~A~~~Y~~~~ 289 (414)
T PF12739_consen 211 MRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYL-ENAYYTYLKSA 289 (414)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHH-HHHHHHHHhhh
Confidence 678999999999999999999998887654333334566677777777777744 3666777 8887776662
Q ss_pred ----cCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHH--HHhccCCCCCcchhhHHHHHHHHHHHHHH
Q 000742 103 ----SDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLA--QTLKENPATSRSSFLKEYIDAHNNIGMLQ 176 (1313)
Q Consensus 103 ----~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~--~~~~~~~~~~~~~~~p~~~~~~~~la~~y 176 (1313)
.......++....+.++... +.+.+|...+-++.... ..+.. -..+..+-.+|.+|
T Consensus 290 ~~~~~~~~~a~R~~ll~~ell~~~--------~~~~~a~~~~~~~~~~~l~~~l~~----------~~~alllE~~a~~~ 351 (414)
T PF12739_consen 290 LPRCSLPYYALRCALLLAELLKSR--------GGYWEAADQLIRWTSEILESDLRP----------FGSALLLEQAAYCY 351 (414)
T ss_pred ccccccccchHHHHHHHHHHHHhc--------CccHHHHHHHHHHHHHHHhhhhhh----------HhhHHHHHHHHHhh
Confidence 22223345555556665555 66666666555554431 11100 01234444444444
Q ss_pred HHcCCHHHHHHHHHHHHhHhhhhccCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742 177 MELDNLEEAKKFLIRGLEICNEEEVSED-DDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICK 240 (1313)
Q Consensus 177 ~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~ 240 (1313)
..+...... .... ....+.-+..-|.-|...|+...|..+|.+|+..+.
T Consensus 352 --------------~~~~~~~~~-~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 352 --------------ASLRSNRPS-PGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred --------------cccccCCCC-ccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 000000000 0000 112233344456788888999999999998888766
No 391
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=92.17 E-value=25 Score=39.96 Aligned_cols=156 Identities=15% Similarity=0.148 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 000742 109 QRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKF 188 (1313)
Q Consensus 109 a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~ 188 (1313)
..+|..+-.....+ ++.++.+|.+.-...+.-..- .+. -.+.--.+..|+.+..+|...|+...-...
T Consensus 124 i~aY~~lLv~Lfl~------d~K~~kea~~~~~~~l~~i~~-~nr-----RtlD~i~ak~~fy~~l~~E~~~~l~~~rs~ 191 (493)
T KOG2581|consen 124 IEAYLYLLVLLFLI------DQKEYKEADKISDALLASISI-QNR-----RTLDLIAAKLYFYLYLSYELEGRLADIRSF 191 (493)
T ss_pred HHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHh-cch-----hhHHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 44555444433333 457788887776665543211 111 122334577889999999999998777777
Q ss_pred HHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHH
Q 000742 189 LIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEA 268 (1313)
Q Consensus 189 ~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 268 (1313)
+..-+..+.- ..+....+.....+-+.|...+.|+.|.....++. ++........++.++.+|.+..-+++|..|
T Consensus 192 l~~~lrtAtL---rhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~--~pe~~snne~ARY~yY~GrIkaiqldYssA 266 (493)
T KOG2581|consen 192 LHALLRTATL---RHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV--YPEAASNNEWARYLYYLGRIKAIQLDYSSA 266 (493)
T ss_pred HHHHHHHhhh---cCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc--CccccccHHHHHHHHHHhhHHHhhcchhHH
Confidence 7666665432 34566778888888999999999999988877764 222222337788999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 000742 269 ILCYQKALNLAQS 281 (1313)
Q Consensus 269 ~~~~~kal~~~~~ 281 (1313)
.+++-+|+..+|.
T Consensus 267 ~~~~~qa~rkapq 279 (493)
T KOG2581|consen 267 LEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHHHHHhCcc
Confidence 9999999999886
No 392
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.16 E-value=5.4 Score=49.16 Aligned_cols=200 Identities=11% Similarity=0.121 Sum_probs=102.7
Q ss_pred HHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHH
Q 000742 189 LIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEA 268 (1313)
Q Consensus 189 ~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 268 (1313)
|.-|+.+++.. ..+......++...|..++..|++++|...|-+++...+. .... .-|.......+=
T Consensus 350 y~~Ai~LAk~~--~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~----s~Vi-------~kfLdaq~IknL 416 (933)
T KOG2114|consen 350 YKVAINLAKSQ--HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP----SEVI-------KKFLDAQRIKNL 416 (933)
T ss_pred HHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh----HHHH-------HHhcCHHHHHHH
Confidence 44444555442 2345567888899999999999999999999999876541 1111 111222333333
Q ss_pred HHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHH
Q 000742 269 ILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIE 348 (1313)
Q Consensus 269 ~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~ 348 (1313)
..|++...+..-...+....+-.+|..++++.+-.+...+.- .+...-+.+.+..++.+
T Consensus 417 t~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~------------~g~~~fd~e~al~Ilr~--------- 475 (933)
T KOG2114|consen 417 TSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD------------KGEWFFDVETALEILRK--------- 475 (933)
T ss_pred HHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC------------CcceeeeHHHHHHHHHH---------
Confidence 444444444433444444555556666666554333322210 00000011111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Q 000742 349 KSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGN 428 (1313)
Q Consensus 349 ~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~ 428 (1313)
..|+.+|..++...+.++ ..+-.++..+++|++|+.|++..= .+.........|.
T Consensus 476 -----------snyl~~a~~LA~k~~~he------~vl~ille~~~ny~eAl~yi~slp--------~~e~l~~l~kyGk 530 (933)
T KOG2114|consen 476 -----------SNYLDEAELLATKFKKHE------WVLDILLEDLHNYEEALRYISSLP--------ISELLRTLNKYGK 530 (933)
T ss_pred -----------hChHHHHHHHHHHhccCH------HHHHHHHHHhcCHHHHHHHHhcCC--------HHHHHHHHHHHHH
Confidence 134444555555444332 224456778899999999886421 2233444556666
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 000742 429 VLDSNGDWAGALDAFQEGYR 448 (1313)
Q Consensus 429 ~y~~~g~~~~A~~~~~kAl~ 448 (1313)
.+.. ..+++-...+-+-+.
T Consensus 531 ~Ll~-h~P~~t~~ili~~~t 549 (933)
T KOG2114|consen 531 ILLE-HDPEETMKILIELIT 549 (933)
T ss_pred HHHh-hChHHHHHHHHHHHh
Confidence 6654 344444444444443
No 393
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.05 E-value=40 Score=42.07 Aligned_cols=36 Identities=19% Similarity=0.240 Sum_probs=29.3
Q ss_pred CcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 000742 23 NRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVS 58 (1313)
Q Consensus 23 ~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~ 58 (1313)
+....+.++...|..++.+|++++|..+|-+.+...
T Consensus 363 d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 363 DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL 398 (933)
T ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence 335556778889999999999999999999887654
No 394
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.00 E-value=12 Score=40.16 Aligned_cols=139 Identities=12% Similarity=0.063 Sum_probs=94.8
Q ss_pred HhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 000742 40 NRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTY 119 (1313)
Q Consensus 40 ~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y 119 (1313)
....-++-++.+.+.++-.+...+.....+++.++|..|...++.+.+.+.. .+.+.-+-..+-.......-..+|.+|
T Consensus 87 l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~-~~~~~~a~stg~KiDv~l~kiRlg~~y 165 (412)
T COG5187 87 LLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWM-RRLMRDAMSTGLKIDVFLCKIRLGLIY 165 (412)
T ss_pred HHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHhcccchhhHHHHHHHHHhh
Confidence 3344566677787777777666556667899999999999999999999999 998888777766655556667888888
Q ss_pred HHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhh
Q 000742 120 YEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEE 199 (1313)
Q Consensus 120 ~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~ 199 (1313)
..+ .-..+.++.+-.+.++-++-. ..-..-...|.......+|.+|-..+...+..+...
T Consensus 166 ~d~-----------~vV~e~lE~~~~~iEkGgDWe---------RrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~ 225 (412)
T COG5187 166 GDR-----------KVVEESLEVADDIIEKGGDWE---------RRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFESS 225 (412)
T ss_pred ccH-----------HHHHHHHHHHHHHHHhCCCHH---------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccccc
Confidence 533 333344444444444433322 112233344556666788888988888888776553
No 395
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.93 E-value=0.065 Score=58.45 Aligned_cols=86 Identities=10% Similarity=-0.013 Sum_probs=72.7
Q ss_pred hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccCh
Q 000742 5 EMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHF 84 (1313)
Q Consensus 5 ~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~ 84 (1313)
+|.+++|++.|..|+++++..... |...|.++...+....|++.+..|+++.+. .+.-|-..|.....+|++
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l--~~kr~sv~lkl~kp~~airD~d~A~ein~D------sa~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAIL--YAKRASVFLKLKKPNAAIRDCDFAIEINPD------SAKGYKFRGYAERLLGNW 198 (377)
T ss_pred CcchhhhhcccccccccCCchhhh--cccccceeeeccCCchhhhhhhhhhccCcc------cccccchhhHHHHHhhch
Confidence 467888999999999998886555 889999999999999999999999888743 366777888889999999
Q ss_pred HHHHHHHHHHHHHHH
Q 000742 85 KDALIYQVKKHLELA 99 (1313)
Q Consensus 85 ~~A~~~~~~kal~l~ 99 (1313)
.+|..++ ..|.++.
T Consensus 199 e~aa~dl-~~a~kld 212 (377)
T KOG1308|consen 199 EEAAHDL-ALACKLD 212 (377)
T ss_pred HHHHHHH-HHHHhcc
Confidence 9999999 8888764
No 396
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.82 E-value=0.18 Score=35.17 Aligned_cols=28 Identities=21% Similarity=0.221 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000742 211 LHHNLGNVYMELRMWDKSREHIEQDIII 238 (1313)
Q Consensus 211 ~~~~lg~~y~~~g~~~~A~~~~~kal~~ 238 (1313)
+++.+|.+|...|++++|+++|++.++.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3444555555555555555555554443
No 397
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.80 E-value=0.17 Score=35.24 Aligned_cols=32 Identities=19% Similarity=0.392 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHccChHHHHHHHHHHHHHHHHH
Q 000742 69 PTCQSLGEVYLRLEHFKDALIYQVKKHLELAKD 101 (1313)
Q Consensus 69 ~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~ 101 (1313)
++++.+|.+|...|++++|+.++ ++.++..|+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~-~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYF-QRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHH-HHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHH-HHHHHHCcC
Confidence 36789999999999999999999 999887664
No 398
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=91.75 E-value=17 Score=49.73 Aligned_cols=164 Identities=15% Similarity=0.169 Sum_probs=113.5
Q ss_pred hhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcc------------------
Q 000742 68 LPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDD------------------ 129 (1313)
Q Consensus 68 ~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~------------------ 129 (1313)
.+....+|..|...|.+.+|+++| ..|+...+..+|..+.+.|+-.++.+..-+.......
T Consensus 242 gR~~k~~gd~~LlaG~~~dAl~~y-~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~~ 320 (1185)
T PF08626_consen 242 GRLQKVLGDLYLLAGRWPDALKEY-TEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTSS 320 (1185)
T ss_pred hhhhhhhhhHHHHcCCHHHHHHHH-HHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccCc
Confidence 456668999999999999999999 9999999999999999999988877655431100000
Q ss_pred ------------------------------hhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhH--HHHHHHHHHHHHHH
Q 000742 130 ------------------------------HYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLK--EYIDAHNNIGMLQM 177 (1313)
Q Consensus 130 ------------------------------~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p--~~~~~~~~la~~y~ 177 (1313)
..-...-...+++++.++.+...... .+.| -+.++...++..+.
T Consensus 321 ~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~----~~~p~lv~~E~~lr~~~~l~ 396 (1185)
T PF08626_consen 321 SSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTS----EYVPQLVYSEACLRFARFLV 396 (1185)
T ss_pred cCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhcccc----ccCcchHHHHHHHHHHHHHH
Confidence 01112223344555555544431110 0111 34567777777777
Q ss_pred HcC--------------------CHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000742 178 ELD--------------------NLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDII 237 (1313)
Q Consensus 178 ~~g--------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~ 237 (1313)
... .-.++..+..+++...-.. -........|..+|.+|..+|-..++--+.+.++.
T Consensus 397 ~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~---l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~ 473 (1185)
T PF08626_consen 397 AQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKD---LSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAV 473 (1185)
T ss_pred HhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhh---CCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 666 6788888888888764331 23556789999999999999999888888888877
Q ss_pred HH
Q 000742 238 IC 239 (1313)
Q Consensus 238 ~~ 239 (1313)
..
T Consensus 474 ~~ 475 (1185)
T PF08626_consen 474 QL 475 (1185)
T ss_pred Hh
Confidence 66
No 399
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.55 E-value=19 Score=39.47 Aligned_cols=205 Identities=12% Similarity=0.031 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000742 249 AKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIE-TVKKAIEVMDELKKEEQNLKKLTRNMIIAK 327 (1313)
Q Consensus 249 ~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg-~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~ 327 (1313)
+.........++..|++..-.+.|++++.. .+.+-| +..++++.+-++.-.........+.+
T Consensus 2 ~~~r~eev~~~~~~g~hk~~~~qyr~~l~~-------------~lt~~~~el~e~~k~~id~~~~~~vslvvsrql---- 64 (399)
T KOG1497|consen 2 AAERSEEVVLIFAEGDHKDQAEQYRQLLAK-------------VLTNNGMELLEALKRFIDAIVNENVSLVVSRQL---- 64 (399)
T ss_pred hhHHHHHHHHHHhcCchhhHHHHHHHHHHH-------------HhccchHHHHHHHHHHHHHHHcCCchhhhHHHH----
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 000742 328 GTSQERKYLLQQNASLDRLIEKSSMI-FAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKS 406 (1313)
Q Consensus 328 ~~~~~a~~~~~~~~~l~~L~~~~~~~-~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~ka 406 (1313)
+..+....... ....|++..+.-..--.+........+.+...+|.+|.+.+++..|-..+.-.
T Consensus 65 ---------------lsl~~~~l~~l~~e~~Kei~~~~l~~iq~rvisfeEqv~~irl~LAsiYE~Eq~~~~aaq~L~~I 129 (399)
T KOG1497|consen 65 ---------------LSLFDVELSILEDELRKEISHFTLEKIQPRVISFEEQVASIRLHLASIYEKEQNWRDAAQVLVGI 129 (399)
T ss_pred ---------------HHHHHHHhccCCHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc
Q ss_pred HHHH-HHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhHHHHHHhhcCHHHHHHHHH
Q 000742 407 WEMY-KSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMIRFDNIEEARRLQH 485 (1313)
Q Consensus 407 l~l~-~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~~~~~~al~~L~~~~~~~~~~~~~a~~~~e 485 (1313)
-.-- +...+.......+..+|.+|.+.++..+|..+-.++--+.....++..+..-----|.+.-.+.+..++|.+|++
T Consensus 130 ~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYye 209 (399)
T KOG1497|consen 130 PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYE 209 (399)
T ss_pred CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 400
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.32 E-value=8 Score=42.20 Aligned_cols=145 Identities=12% Similarity=0.030 Sum_probs=90.2
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHH
Q 000742 31 ANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQR 110 (1313)
Q Consensus 31 ~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~ 110 (1313)
-+.-+.-....|++.+|...|..+++..++. ..+...++.+|...|+.+.|...+ .. .|......
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~------~~~~~~la~~~l~~g~~e~A~~iL-~~----lP~~~~~~---- 201 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAAPEN------SEAKLLLAECLLAAGDVEAAQAIL-AA----LPLQAQDK---- 201 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhCccc------chHHHHHHHHHHHcCChHHHHHHH-Hh----Ccccchhh----
Confidence 3456777889999999999999999988443 778889999999999999997777 32 12111100
Q ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHH------HHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHH
Q 000742 111 ACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAM------KLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEE 184 (1313)
Q Consensus 111 a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al------~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~ 184 (1313)
.+.. ....++.+.+|- .+-..... .|+...+-+.+|..|...|++++
T Consensus 202 ~~~~------------------l~a~i~ll~qaa~~~~~~~l~~~~aa---------dPdd~~aa~~lA~~~~~~g~~e~ 254 (304)
T COG3118 202 AAHG------------------LQAQIELLEQAAATPEIQDLQRRLAA---------DPDDVEAALALADQLHLVGRNEA 254 (304)
T ss_pred HHHH------------------HHHHHHHHHHHhcCCCHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHH
Confidence 0111 000111111111 11111111 34557889999999999999999
Q ss_pred HHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCC
Q 000742 185 AKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRM 224 (1313)
Q Consensus 185 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 224 (1313)
|.+.+-..++.... .....+...+-.++...|.
T Consensus 255 Ale~Ll~~l~~d~~-------~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 255 ALEHLLALLRRDRG-------FEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHHHHHHhccc-------ccCcHHHHHHHHHHHhcCC
Confidence 99988777766322 1122344445555555553
No 401
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.06 E-value=42 Score=40.42 Aligned_cols=101 Identities=14% Similarity=0.061 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccChhHH
Q 000742 209 SRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDAL 288 (1313)
Q Consensus 209 ~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~ 288 (1313)
-.++.+-|.-.++..+|..|++.|...+...+.-......+.....++.+|..+.+.+.|.+++++|-+..|+..-....
T Consensus 354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~ 433 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLL 433 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 34566777888888999999999999988876544444558888999999999999999999999999888766544444
Q ss_pred HHHHHHhHHHHHHHHHHHHHH
Q 000742 289 ASQIDQNIETVKKAIEVMDEL 309 (1313)
Q Consensus 289 ~~~~~~~lg~~~~a~~~~~~a 309 (1313)
+..+...-|.-.+|+......
T Consensus 434 ~~~~~~~E~~Se~AL~~~~~~ 454 (872)
T KOG4814|consen 434 MLQSFLAEDKSEEALTCLQKI 454 (872)
T ss_pred HHHHHHHhcchHHHHHHHHHH
Confidence 444444444555555544433
No 402
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=90.86 E-value=9.3 Score=45.50 Aligned_cols=189 Identities=13% Similarity=0.024 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHH
Q 000742 70 TCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQT 149 (1313)
Q Consensus 70 ~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~ 149 (1313)
....+|..++.+|+|+-|...| +.+.+-+....-....+-++-..|.+...... .....-.-+....+++.|+..+.+
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y-~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~-~~~~k~~~~~~~~~le~A~~~Y~~ 287 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTY-RLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQ-SISAKIRKDEIEPYLENAYYTYLK 287 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHH-HHHHHHHhhchhHHHHHhHHHHHHHHHHhcCC-CCccccccccHHHHHHHHHHHHHh
Confidence 3457999999999999999999 88887666555555555666666666554410 000001223566777777776666
Q ss_pred hccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHh--hhhccCCCchHHHHHHHHHHHHH--HHcCCH
Q 000742 150 LKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEIC--NEEEVSEDDDGRSRLHHNLGNVY--MELRMW 225 (1313)
Q Consensus 150 ~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~lg~~y--~~~g~~ 225 (1313)
....... .......+....+.++...+.+.+|...+-++.... ... ..-..+.++..+|.+| ......
T Consensus 288 ~~~~~~~----~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l----~~~~~alllE~~a~~~~~~~~~~~ 359 (414)
T PF12739_consen 288 SALPRCS----LPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDL----RPFGSALLLEQAAYCYASLRSNRP 359 (414)
T ss_pred hhccccc----cccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhh----hhHhhHHHHHHHHHhhcccccCCC
Confidence 3211000 011345677777888888999988888777776552 111 0111455666667666 111000
Q ss_pred HHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 000742 226 DKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQS 281 (1313)
Q Consensus 226 ~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~ 281 (1313)
..-..- ....+.-+..-|.-|.+.|+...|..+|.+|+.+...
T Consensus 360 ~~~~~r-------------~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~ 402 (414)
T PF12739_consen 360 SPGLTR-------------FRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEG 402 (414)
T ss_pred Cccchh-------------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 000000 1122333445577888999999999999999998864
No 403
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=90.49 E-value=0.61 Score=33.83 Aligned_cols=32 Identities=28% Similarity=0.445 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 000742 381 DSFLVIGESYQKLRKFNKAIKWYTKSWEMYKS 412 (1313)
Q Consensus 381 ~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~ 412 (1313)
.+|..||.+-...++|++|+.-|++++++..+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~ 33 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEE 33 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 45666677777777777777777777766554
No 404
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=89.79 E-value=54 Score=42.66 Aligned_cols=61 Identities=13% Similarity=-0.102 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHhCCchhhH-HHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 000742 347 IEKSSMIFAWLKHCEYAKR------KKRIASELCDKGKLS-DSFLVIGESYQKLRKFNKAIKWYTKSW 407 (1313)
Q Consensus 347 ~~~~~~~~~~~~A~~~~~~------a~~i~~~~~~~~~~a-~~~~~lg~~y~~~g~~~~A~~~~~kal 407 (1313)
+..|...|+.++|++.|+. ++.++.++....... ..-..|+.-...++++-+|-+..+..+
T Consensus 959 al~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 959 ALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 3344444555555544432 333444333332221 222456666667777777766655554
No 405
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.37 E-value=8.5 Score=39.77 Aligned_cols=62 Identities=10% Similarity=0.092 Sum_probs=51.2
Q ss_pred hhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 000742 377 GKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALD 441 (1313)
Q Consensus 377 ~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~ 441 (1313)
-..+...+.+|..|. ..+.++|+..|-+++++.+. +....+.++..||.+|.+.|++++|.-
T Consensus 138 l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~--~~~~n~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 138 LETAELQYALATYYT-KRDPEKTIQLLLRALELSNP--DDNFNPEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred CCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHHHhcchhhhhh
Confidence 356788888988777 67899999999999998763 224567889999999999999999864
No 406
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=89.17 E-value=37 Score=36.83 Aligned_cols=63 Identities=10% Similarity=-0.084 Sum_probs=39.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHH
Q 000742 212 HHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHY-RVQKYDEAILCYQKALNLA 279 (1313)
Q Consensus 212 ~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~kal~~~ 279 (1313)
+..+|.++...|+|++++.++++++...+. ....-...++.+|. ..|....+.+.+.......
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~e-----Lt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~ 67 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPE-----LTEEERNLLSVAYKNVIGSRRASWRILSSIEQKE 67 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCC-----CCHHHHHHHHHHHHhccccchHHHHhhhhHhhhh
Confidence 467899999999999999999999988432 23333444445552 3445555555554444333
No 407
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=89.16 E-value=0.37 Score=32.75 Aligned_cols=29 Identities=28% Similarity=0.743 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 000742 381 DSFLVIGESYQKLRKFNKAIKWYTKSWEM 409 (1313)
Q Consensus 381 ~~~~~lg~~y~~~g~~~~A~~~~~kal~l 409 (1313)
.++..+|.+|..++++++|+.+|++++++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 34566777777777777777777776654
No 408
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=88.96 E-value=3.1 Score=38.31 Aligned_cols=101 Identities=16% Similarity=0.129 Sum_probs=59.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHh-chhh
Q 000742 172 IGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMEL----RMWDKSREHIEQDIIICKKI-EHCQ 246 (1313)
Q Consensus 172 la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~----g~~~~A~~~~~kal~~~~~~-~~~~ 246 (1313)
.|..++..|++-+|++..+..+....+ .......+..-|.++..+ .+.+-=..|+.-+++-+.+. .-.+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~------~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp 75 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGE------DESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSP 75 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccC------CCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccCh
Confidence 356678889999999999999887543 332335666667777554 34443333444444333321 1123
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 000742 247 GEAKGYINLGELHYRVQKYDEAILCYQKALNL 278 (1313)
Q Consensus 247 ~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~ 278 (1313)
..+..++.+|.-+-....|+++....++++.+
T Consensus 76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 76 DSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 55677777776655555566666665555543
No 409
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=88.82 E-value=58 Score=38.67 Aligned_cols=75 Identities=11% Similarity=-0.057 Sum_probs=56.0
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHH
Q 000742 16 RSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKH 95 (1313)
Q Consensus 16 ~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ka 95 (1313)
++-++.+|.+..+ |+.+-.-+-.+ -++++.+.|++.+...+. .+.++...........+|+...+.| .++
T Consensus 10 ~~rie~nP~di~s--w~~lire~qt~-~~~~~R~~YEq~~~~FP~------s~r~W~~yi~~El~skdfe~VEkLF-~RC 79 (656)
T KOG1914|consen 10 RERIEENPYDIDS--WSQLIREAQTQ-PIDKVRETYEQLVNVFPS------SPRAWKLYIERELASKDFESVEKLF-SRC 79 (656)
T ss_pred HHHHhcCCccHHH--HHHHHHHHccC-CHHHHHHHHHHHhccCCC------CcHHHHHHHHHHHHhhhHHHHHHHH-HHH
Confidence 4445666766555 88887777665 999999999998776643 3667777777777888999999999 888
Q ss_pred HHHHH
Q 000742 96 LELAK 100 (1313)
Q Consensus 96 l~l~~ 100 (1313)
|.-.-
T Consensus 80 LvkvL 84 (656)
T KOG1914|consen 80 LVKVL 84 (656)
T ss_pred HHHHh
Confidence 86443
No 410
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=88.82 E-value=16 Score=42.37 Aligned_cols=55 Identities=9% Similarity=0.103 Sum_probs=42.2
Q ss_pred hhhHHHHHHHHHHHHHhcCcHH----------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 000742 5 EMQMSEAKRAYRSAKEEGNRQE----------EARWANVIGDILKNRGEYVEALKWFRIDYDVSV 59 (1313)
Q Consensus 5 ~~~~~~A~~~l~~a~~~~~~~~----------~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~ 59 (1313)
...|+++.+.|..++...++.. -+.++.+++.++..+|+++.|.+..++|+-...
T Consensus 7 s~~Y~~~q~~F~~~v~~~Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e 71 (360)
T PF04910_consen 7 SKAYQEAQEQFYAAVQSHDPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFE 71 (360)
T ss_pred CHHHHHHHHHHHHHHHccCHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 4577888888888877654322 224578899999999999999999999987664
No 411
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=88.73 E-value=7.3 Score=53.13 Aligned_cols=58 Identities=17% Similarity=0.225 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhc
Q 000742 206 DGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQ 263 (1313)
Q Consensus 206 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g 263 (1313)
...++....+|..|...|.+.+|+++|.+|+...+..+|.-..+.++-.++.+..-.+
T Consensus 239 r~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~ 296 (1185)
T PF08626_consen 239 RCKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLS 296 (1185)
T ss_pred hhhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHh
Confidence 3467788899999999999999999999999999999999999999988887765443
No 412
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.49 E-value=13 Score=38.49 Aligned_cols=78 Identities=13% Similarity=0.118 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHH
Q 000742 182 LEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYR 261 (1313)
Q Consensus 182 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~ 261 (1313)
-++|...|.++... ..-..+...+.+|..|. ..+.++|+..+.+++++.... ....+.++..|+.+|..
T Consensus 122 d~~A~~~fL~~E~~--------~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~--~~~n~eil~sLas~~~~ 190 (203)
T PF11207_consen 122 DQEALRRFLQLEGT--------PELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPD--DNFNPEILKSLASIYQK 190 (203)
T ss_pred cHHHHHHHHHHcCC--------CCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHHHHH
Confidence 36777777665332 12234677888887776 678999999999999997643 23567889999999999
Q ss_pred hcCHHHHHH
Q 000742 262 VQKYDEAIL 270 (1313)
Q Consensus 262 ~g~~~~A~~ 270 (1313)
+|+++.|.-
T Consensus 191 ~~~~e~AYi 199 (203)
T PF11207_consen 191 LKNYEQAYI 199 (203)
T ss_pred hcchhhhhh
Confidence 999998853
No 413
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.43 E-value=9.9 Score=37.86 Aligned_cols=151 Identities=13% Similarity=0.048 Sum_probs=95.0
Q ss_pred HHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccC
Q 000742 74 LGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKEN 153 (1313)
Q Consensus 74 lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~ 153 (1313)
.|.-|+..+.-.++-+.| ..+|+++...+ .++|+..|....+ .+..
T Consensus 45 ~gy~yw~~s~as~sgd~f-laAL~lA~~~k-----------------------------~d~Alaaf~~lek----tg~g 90 (221)
T COG4649 45 VGYTYWQTSRASKSGDAF-LAALKLAQENK-----------------------------TDDALAAFTDLEK----TGYG 90 (221)
T ss_pred eeeehhcccccccchHHH-HHHHHHHHcCC-----------------------------chHHHHHHHHHHh----cCCC
Confidence 455677778888888888 88888876543 3344433332211 1111
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000742 154 PATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIE 233 (1313)
Q Consensus 154 ~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~ 233 (1313)
..-.-+.+..|.+..+.|+...|+.+|.++-....- .....-.+...-+.++...|-|++-..-.+
T Consensus 91 ---------~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~-----P~~~rd~ARlraa~lLvD~gsy~dV~srve 156 (221)
T COG4649 91 ---------SYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI-----PQIGRDLARLRAAYLLVDNGSYDDVSSRVE 156 (221)
T ss_pred ---------cchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC-----cchhhHHHHHHHHHHHhccccHHHHHHHhh
Confidence 122456778888899999999999999987654221 011122344455666677777776544332
Q ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 000742 234 QDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALN 277 (1313)
Q Consensus 234 kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~ 277 (1313)
..- ....+....+...||..-++.|++.+|...|.+...
T Consensus 157 pLa-----~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 157 PLA-----GDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hcc-----CCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 211 122345667778889999999999999999987665
No 414
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=88.36 E-value=56 Score=37.95 Aligned_cols=191 Identities=15% Similarity=0.026 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCc--hhHHHHHHHHHHHccChHHHHHHHHHHHHHHHH-HhcCHH
Q 000742 30 WANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHL--LPTCQSLGEVYLRLEHFKDALIYQVKKHLELAK-DASDLV 106 (1313)
Q Consensus 30 ~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~--~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~-~~~~~~ 106 (1313)
.+...|.++..++++.+|.+.|.+..+..... +.. -+++..+-.--+-+.+.+.- +..+...+ ..+..
T Consensus 8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~---~f~lkeEvl~grilnAffl~nld~M-----e~~l~~l~~~~~~s- 78 (549)
T PF07079_consen 8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESS---PFLLKEEVLGGRILNAFFLNNLDLM-----EKQLMELRQQFGKS- 78 (549)
T ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcc---hHHHHHHHHhhHHHHHHHHhhHHHH-----HHHHHHHHHhcCCc-
Confidence 35577899999999999999999887765322 111 12332222222223344433 33332222 22211
Q ss_pred HHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHH--HHHHHHHHHHHHHcCCHHH
Q 000742 107 EQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEY--IDAHNNIGMLQMELDNLEE 184 (1313)
Q Consensus 107 ~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~--~~~~~~la~~y~~~g~~~~ 184 (1313)
.......|...+.. +.|.+|++.+..--...+.....--. ..+.... ...-...|..+...|+|.+
T Consensus 79 --~~l~LF~~L~~Y~~--------k~~~kal~~ls~w~~~~~~~~~~~Ld--~ni~~l~~df~l~~i~a~sLIe~g~f~E 146 (549)
T PF07079_consen 79 --AYLPLFKALVAYKQ--------KEYRKALQALSVWKEQIKGTESPWLD--TNIQQLFSDFFLDEIEAHSLIETGRFSE 146 (549)
T ss_pred --hHHHHHHHHHHHHh--------hhHHHHHHHHHHHHhhhcccccchhh--hhHHHHhhHHHHHHHHHHHHHhcCCcch
Confidence 12234455555555 88888888776544332221111000 0000011 1122345778899999999
Q ss_pred HHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHH
Q 000742 185 AKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYME----LRMWDKSREHIEQDIIICKK 241 (1313)
Q Consensus 185 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~----~g~~~~A~~~~~kal~~~~~ 241 (1313)
+...+++.+...-+-+-.-+....-.+...+|..|.- ...++-+..||+.++-..++
T Consensus 147 gR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kk 207 (549)
T PF07079_consen 147 GRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKK 207 (549)
T ss_pred HHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHH
Confidence 9999999887543311101112222233345555532 22344455555555544443
No 415
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=88.21 E-value=1.1 Score=32.62 Aligned_cols=33 Identities=15% Similarity=0.246 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 000742 421 LAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEA 453 (1313)
Q Consensus 421 ~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~ 453 (1313)
.+|..||.+-...++|++|+..|++++++.++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l 34 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEEL 34 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 468889999999999999999999999997764
No 416
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.69 E-value=4.2 Score=45.93 Aligned_cols=104 Identities=21% Similarity=0.278 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHH
Q 000742 28 ARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVE 107 (1313)
Q Consensus 28 a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~ 107 (1313)
-+++..+|..|...|+++.|++.|-++-+..... .+.+..+.++-.+-..+|+|..-..|. .+|............
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~---khvInm~ln~i~VSI~~~nw~hv~sy~-~~A~st~~~~~~~~q 225 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSA---KHVINMCLNLILVSIYMGNWGHVLSYI-SKAESTPDANENLAQ 225 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcch---HHHHHHHHHHHHHHHhhcchhhhhhHH-HHHHhCchhhhhHHH
Confidence 4568899999999999999999999988887433 566788888888888999999999988 888765311111000
Q ss_pred --HHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHH
Q 000742 108 --QQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSA 143 (1313)
Q Consensus 108 --~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~A 143 (1313)
-+++...-|.+...+ ++|+.|.++|-.+
T Consensus 226 ~v~~kl~C~agLa~L~l--------kkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 226 EVPAKLKCAAGLANLLL--------KKYKSAAKYFLLA 255 (466)
T ss_pred hcCcchHHHHHHHHHHH--------HHHHHHHHHHHhC
Confidence 112233334444444 7777777777654
No 417
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=87.69 E-value=0.47 Score=32.19 Aligned_cols=28 Identities=43% Similarity=0.687 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 000742 251 GYINLGELHYRVQKYDEAILCYQKALNL 278 (1313)
Q Consensus 251 ~~~~la~~~~~~g~~~~A~~~~~kal~~ 278 (1313)
++..+|.++..++++++|+.++++++++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 3445555555555555555555555543
No 418
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=87.33 E-value=3.2 Score=48.65 Aligned_cols=104 Identities=15% Similarity=0.220 Sum_probs=76.3
Q ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhh
Q 000742 168 AHNNIGMLQ-MELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQ 246 (1313)
Q Consensus 168 ~~~~la~~y-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~ 246 (1313)
.+.+++..| ..+|+..+|...+..|+-.... ...-.++..+|.++.+.|...+|--.+..|+.-++
T Consensus 214 ~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~-------h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~------ 280 (886)
T KOG4507|consen 214 VLHNMASFYWRIKGEPYQAVECAMRALHFSSR-------HNKDIALLSLATVLHRAGFSADAAVILHAALDDAD------ 280 (886)
T ss_pred HHHHHHHHHHHHcCChhhhhHHHHHHhhhCCc-------ccccchhhhHHHHHHHcccccchhheeehhccCCc------
Confidence 344555554 4578999999999999887544 22334678899999999998888777766665544
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccC
Q 000742 247 GEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMED 284 (1313)
Q Consensus 247 ~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~ 284 (1313)
....-++.+|.++..+++|...+..|..+.+..|....
T Consensus 281 ~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q 318 (886)
T KOG4507|consen 281 FFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQ 318 (886)
T ss_pred cccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhH
Confidence 44444888899999999999888888888877665443
No 419
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=87.14 E-value=1.4 Score=34.82 Aligned_cols=33 Identities=18% Similarity=0.262 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcc
Q 000742 251 GYINLGELHYRVQKYDEAILCYQKALNLAQSME 283 (1313)
Q Consensus 251 ~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~ 283 (1313)
.++.+|..++++|+|++|..+.+.++++.|...
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~ 35 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNR 35 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence 456677777777777777777777777776543
No 420
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.83 E-value=24 Score=35.24 Aligned_cols=149 Identities=9% Similarity=-0.071 Sum_probs=94.7
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 000742 36 DILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQL 115 (1313)
Q Consensus 36 ~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~l 115 (1313)
.-|++.+.-.++-..|..++++. ..++.++|+.-| ....+ .+.-.....+....
T Consensus 47 y~yw~~s~as~sgd~flaAL~lA---------------------~~~k~d~Alaaf-~~lek----tg~g~YpvLA~mr~ 100 (221)
T COG4649 47 YTYWQTSRASKSGDAFLAALKLA---------------------QENKTDDALAAF-TDLEK----TGYGSYPVLARMRA 100 (221)
T ss_pred eehhcccccccchHHHHHHHHHH---------------------HcCCchHHHHHH-HHHHh----cCCCcchHHHHHHH
Confidence 44667777777777777777665 345667777766 33222 11111122445666
Q ss_pred HHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhH
Q 000742 116 GRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEI 195 (1313)
Q Consensus 116 g~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 195 (1313)
|.+.... |+...|+.+|.++-.... .+ .+..-.+...-|..+...|-|++-..-.+..
T Consensus 101 at~~a~k--------gdta~AV~aFdeia~dt~---~P--------~~~rd~ARlraa~lLvD~gsy~dV~srvepL--- 158 (221)
T COG4649 101 ATLLAQK--------GDTAAAVAAFDEIAADTS---IP--------QIGRDLARLRAAYLLVDNGSYDDVSSRVEPL--- 158 (221)
T ss_pred HHHHhhc--------ccHHHHHHHHHHHhccCC---Cc--------chhhHHHHHHHHHHHhccccHHHHHHHhhhc---
Confidence 6666654 888888888877643310 00 0111234555667778888888765443322
Q ss_pred hhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000742 196 CNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDII 237 (1313)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~ 237 (1313)
. .+..++...+...||..-++.|++.+|.+.|.+...
T Consensus 159 a-----~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 159 A-----GDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred c-----CCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 1 245778888999999999999999999999988766
No 421
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.70 E-value=12 Score=40.96 Aligned_cols=59 Identities=8% Similarity=0.039 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 000742 210 RLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQK 274 (1313)
Q Consensus 210 ~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~k 274 (1313)
..-..-+.-....|++.+|...|..++...+ ....+...++.+|...|+.+.|...+..
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~------~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAP------ENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCc------ccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 3456667777888888888888888888876 4567778888888888888888776654
No 422
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=86.67 E-value=0.73 Score=30.26 Aligned_cols=20 Identities=45% Similarity=0.669 Sum_probs=8.5
Q ss_pred CccEEEccCCC-CChHHHHHH
Q 000742 1087 GILELNLGGNP-IMKEGANAL 1106 (1313)
Q Consensus 1087 ~L~~L~Ls~N~-i~~~~~~~l 1106 (1313)
.|++|+|++|. |+|.|+..+
T Consensus 3 ~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 3 NLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCEeCCCCCCCcCHHHHHHH
Confidence 34444444443 444444433
No 423
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=86.52 E-value=38 Score=39.32 Aligned_cols=157 Identities=13% Similarity=0.023 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhcc--------C--CCCCc----chhhHHHHHHHHHHHHH
Q 000742 110 RACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKE--------N--PATSR----SSFLKEYIDAHNNIGML 175 (1313)
Q Consensus 110 ~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~--------~--~~~~~----~~~~p~~~~~~~~la~~ 175 (1313)
.++..++.++..+ |+++.|.+..++|+-.++..-. . ....+ .........+.+.....
T Consensus 41 dtLlqls~v~~~~--------gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 41 DTLLQLSEVYRQQ--------GDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred HHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 6788999999988 8999999999998877653111 0 00000 11234566777888888
Q ss_pred HHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHH
Q 000742 176 QMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINL 255 (1313)
Q Consensus 176 y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~l 255 (1313)
..+.|-+..|+++.+-.+.+.+. + +| ..+.+.+-....+.++|+--++.++.......+. -....+..-+..
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~----~-DP--~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~-~~~~lPn~a~S~ 184 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPD----E-DP--LGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN-WLSLLPNFAFSI 184 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCC----C-Cc--chhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh-hhhhCccHHHHH
Confidence 89999999999999999998544 1 22 2344555556667788887777777655421100 001233456777
Q ss_pred HHHHHHhcCH---------------HHHHHHHHHHHHHHHHc
Q 000742 256 GELHYRVQKY---------------DEAILCYQKALNLAQSM 282 (1313)
Q Consensus 256 a~~~~~~g~~---------------~~A~~~~~kal~~~~~~ 282 (1313)
+.+++..++- ++|...+.+|+...|..
T Consensus 185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 7788888777 88999999999888753
No 424
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=86.49 E-value=53 Score=35.63 Aligned_cols=189 Identities=14% Similarity=0.085 Sum_probs=104.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHc-cChHHHHHHHHHHHHHHHH-HhcCHHHH
Q 000742 31 ANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRL-EHFKDALIYQVKKHLELAK-DASDLVEQ 108 (1313)
Q Consensus 31 ~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~-g~~~~A~~~~~~kal~l~~-~~~~~~~~ 108 (1313)
+..+|.+..+.++|++.+.+.+++.+... +.....+-.+.+..+|... |....+...+ .. ++... ..+...
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~---~~eLt~EERnLLSvayKn~i~~~R~s~R~i-~s-ie~ke~~~~~~~-- 76 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVD---SEELTVEERNLLSVAYKNVIGARRASWRII-SS-IEQKEESRGNED-- 76 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcC---CccCCHHHHHHHHHHHhhhhcccHHHHHHH-hH-HHHhhhccCchH--
Confidence 34678888899999999999999877521 1122234455666666543 6666666665 43 22221 111111
Q ss_pred HHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCC---CcchhhHHHHHHHHHHHHHHHHc---CCH
Q 000742 109 QRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPAT---SRSSFLKEYIDAHNNIGMLQMEL---DNL 182 (1313)
Q Consensus 109 a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~---~~~~~~p~~~~~~~~la~~y~~~---g~~ 182 (1313)
...+..-|.. .=-++-.......+.+..+.--+... .+.-|....+..|..++.+.... .-.
T Consensus 77 ---~~~~~~~yr~---------kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~ 144 (244)
T smart00101 77 ---HVASIKEYRG---------KIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAA 144 (244)
T ss_pred ---HHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 1122222221 11123344556666666554332211 11223344455555555543221 125
Q ss_pred HHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHH
Q 000742 183 EEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYM-ELRMWDKSREHIEQDIIIC 239 (1313)
Q Consensus 183 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~-~~g~~~~A~~~~~kal~~~ 239 (1313)
++|.+.|++|++++... ....+|.......|.+..|+ -+++.++|.+..++|+.-+
T Consensus 145 ~~a~~aY~~A~e~a~~~-L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A 201 (244)
T smart00101 145 ENTLVAYKSAQDIALAE-LPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 201 (244)
T ss_pred HHHHHHHHHHHHHHHcc-CCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 68999999999987651 13445655556666665554 4699999998888776654
No 425
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=86.39 E-value=7.8 Score=33.12 Aligned_cols=28 Identities=14% Similarity=0.350 Sum_probs=20.7
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChh
Q 000742 430 LDSNGDWAGALDAFQEGYRIAVEANLPS 457 (1313)
Q Consensus 430 y~~~g~~~~A~~~~~kAl~i~~~~~~~~ 457 (1313)
-...|+|++|+.+|.+|++.+....++.
T Consensus 16 eD~~gny~eA~~lY~~ale~~~~ekn~~ 43 (75)
T cd02680 16 EDEKGNAEEAIELYTEAVELCINTSNET 43 (75)
T ss_pred hhHhhhHHHHHHHHHHHHHHHHHhcChh
Confidence 3467889999999999998876644443
No 426
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.35 E-value=28 Score=39.68 Aligned_cols=122 Identities=16% Similarity=0.201 Sum_probs=81.5
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHH
Q 000742 93 KKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNI 172 (1313)
Q Consensus 93 ~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~l 172 (1313)
+.-++-++...-....-+++..+|.-|..- |+++.|++.|-++-.++.... ..+..+.++
T Consensus 134 ~~eLk~yK~n~iKEsiRra~~Dl~dhy~~c--------G~l~~Alr~YsR~RdYCTs~k------------hvInm~ln~ 193 (466)
T KOG0686|consen 134 DNELKSYKDNLIKESIRRALEDLGDHYLDC--------GQLDNALRCYSRARDYCTSAK------------HVINMCLNL 193 (466)
T ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHHHHh--------ccHHHHHhhhhhhhhhhcchH------------HHHHHHHHH
Confidence 444444444444555668889999999976 999999999999888876542 557888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000742 173 GMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQD 235 (1313)
Q Consensus 173 a~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~ka 235 (1313)
-.+-...|+|-.-..+..+|........ .......+.+...-|.+...+++|..|.++|-.+
T Consensus 194 i~VSI~~~nw~hv~sy~~~A~st~~~~~-~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 194 ILVSIYMGNWGHVLSYISKAESTPDANE-NLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred HHHHHhhcchhhhhhHHHHHHhCchhhh-hHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 8888999999998888888876521100 0001111223444555556666777777776544
No 427
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=85.91 E-value=0.84 Score=29.97 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=19.5
Q ss_pred CCCcCEEEecCCC-CCHHHHHHHHH
Q 000742 857 HKTVALLDLSHNL-LGNGTMEKLQQ 880 (1313)
Q Consensus 857 ~~~L~~L~Ls~n~-l~~~~~~~L~~ 880 (1313)
++.|+.|+|++|. |+|.++..|++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 4678999999986 89988887764
No 428
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=85.82 E-value=11 Score=34.75 Aligned_cols=103 Identities=13% Similarity=0.142 Sum_probs=65.3
Q ss_pred HHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCc---chhhHHHHHHHHHHHHHHHHHh
Q 000742 74 LGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDD---DHYSIRNAKKYFKSAMKLAQTL 150 (1313)
Q Consensus 74 lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~---~~~~~~~A~~~~~~Al~l~~~~ 150 (1313)
.|.-++..|++-+|++.. +..+....+..+.. ..+..-|.++..+....++ +..-.-.|++.|.++..+
T Consensus 2 ~A~~~~~rGnhiKAL~ii-ed~i~~h~~~~~~~---~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L---- 73 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEII-EDLISRHGEDESSW---LLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL---- 73 (111)
T ss_pred hHHHHHHccCHHHHHHHH-HHHHHHccCCCchH---HHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc----
Confidence 466788899999999999 88887766655422 3455666666655322211 111223455555555555
Q ss_pred ccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhH
Q 000742 151 KENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEI 195 (1313)
Q Consensus 151 ~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 195 (1313)
.|.-+..++.+|.-+.....|+++....++++.+
T Consensus 74 -----------sp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 74 -----------SPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred -----------ChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 3456778888887776666777777777777665
No 429
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=85.22 E-value=4.9 Score=34.28 Aligned_cols=34 Identities=9% Similarity=0.119 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 000742 420 ALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEA 453 (1313)
Q Consensus 420 ~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~ 453 (1313)
+..+...|.-+.+.|++++|+.+|++|++...+.
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~ 39 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQI 39 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 4446666777889999999999999999987653
No 430
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.21 E-value=39 Score=37.50 Aligned_cols=51 Identities=14% Similarity=-0.060 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHh
Q 000742 48 LKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDA 102 (1313)
Q Consensus 48 l~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~ 102 (1313)
-..|+++.+..++... ....-..-|.++...++|.+....+ ..+-+..+..
T Consensus 41 ~~~y~Q~~q~~kk~~~---~il~~L~~Gl~a~~~~dya~S~~~l-dAae~~~Kqq 91 (449)
T COG3014 41 KKAYEQSKQFTKKKKN---ALLWDLQNGLSALYARDYATSLGVL-DAAEQRFKQQ 91 (449)
T ss_pred hhHHHHHHHhhhhhhH---HHHHhhhhhHHHHHhhhHHHhhhHH-HHHHHHHhhh
Confidence 3445555555543311 1122235677777778888777776 5555444443
No 431
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=85.16 E-value=66 Score=35.52 Aligned_cols=48 Identities=21% Similarity=0.247 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000742 136 AKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRG 192 (1313)
Q Consensus 136 A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~a 192 (1313)
-....++|++.. +....+ -..+..+..+|..|.+.|++.+|..+|-.+
T Consensus 69 r~~fi~~ai~WS-~~~~~~--------~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 69 RKKFIKAAIKWS-KFGSYK--------FGDPELHHLLAEKLWKEGNYYEAERHFLLG 116 (260)
T ss_dssp HHHHHHHHHHHH-HTSS-T--------T--HHHHHHHHHHHHHTT-HHHHHHHHHTS
T ss_pred HHHHHHHHHHHH-ccCCCC--------CCCHHHHHHHHHHHHhhccHHHHHHHHHhc
Confidence 445566666666 222211 145677888888888888887777776544
No 432
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=84.74 E-value=18 Score=41.19 Aligned_cols=113 Identities=14% Similarity=0.128 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCC---------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000742 165 YIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSED---------DDGRSRLHHNLGNVYMELRMWDKSREHIEQD 235 (1313)
Q Consensus 165 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~---------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~ka 235 (1313)
+..+...=|..++++++|..|.--|..|++++.+-...+. ......+-..+..||..+++.+.|+.+..+.
T Consensus 175 wl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrs 254 (569)
T PF15015_consen 175 WLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRS 254 (569)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhh
Confidence 4455566677888899999999999999998776321111 1123445677899999999999999999999
Q ss_pred HHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcc
Q 000742 236 IIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSME 283 (1313)
Q Consensus 236 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~ 283 (1313)
+.+.| ....-+..-|.++..+.+|.+|-+.+--|.-++--.+
T Consensus 255 I~lnP------~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~g 296 (569)
T PF15015_consen 255 INLNP------SYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLSG 296 (569)
T ss_pred hhcCc------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 98876 5666677778899999999999888777766654444
No 433
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=84.45 E-value=70 Score=35.28 Aligned_cols=104 Identities=13% Similarity=0.014 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChH-HHHHHHHHHHHHHHHHhcCHHH
Q 000742 29 RWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFK-DALIYQVKKHLELAKDASDLVE 107 (1313)
Q Consensus 29 ~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~-~A~~~~~~kal~l~~~~~~~~~ 107 (1313)
..++.=+..+.+.|++..|.+...-.++...+...... ......++.++...+.-+ +-.++. ++|++..........
T Consensus 11 dLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~-~~~~~rl~~l~~~~~~~~p~r~~fi-~~ai~WS~~~~~~~G 88 (260)
T PF04190_consen 11 DLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVD-EESIARLIELISLFPPEEPERKKFI-KAAIKWSKFGSYKFG 88 (260)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---S-HHHHHHHHHHHHHS-TT-TTHHHHH-HHHHHHHHTSS-TT-
T ss_pred HHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCCcchHHHHH-HHHHHHHccCCCCCC
Confidence 33556667777888888888877777777666433322 233456777776665444 345566 888888844344445
Q ss_pred HHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHH
Q 000742 108 QQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKS 142 (1313)
Q Consensus 108 ~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~ 142 (1313)
....+..+|..|... +++.+|..+|-.
T Consensus 89 dp~LH~~~a~~~~~e--------~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 89 DPELHHLLAEKLWKE--------GNYYEAERHFLL 115 (260)
T ss_dssp -HHHHHHHHHHHHHT--------T-HHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhh--------ccHHHHHHHHHh
Confidence 557788999999876 778777777643
No 434
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=84.33 E-value=55 Score=37.47 Aligned_cols=129 Identities=9% Similarity=-0.087 Sum_probs=85.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHH
Q 000742 131 YSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSR 210 (1313)
Q Consensus 131 ~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 210 (1313)
.-.+..+..|++|++.. |.....+..+-..+.+..+.++..+-+++++...+. ......
T Consensus 45 a~~E~klsilerAL~~n---------------p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~------~~~LW~ 103 (321)
T PF08424_consen 45 ALAERKLSILERALKHN---------------PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG------SPELWR 103 (321)
T ss_pred HHHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC------ChHHHH
Confidence 34566677888888771 111233444444445666778888888888887432 333333
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhch------------hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 000742 211 LHHNLGNVYMELRMWDKSREHIEQDIIICKKIEH------------CQGEAKGYINLGELHYRVQKYDEAILCYQKALNL 278 (1313)
Q Consensus 211 ~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~ 278 (1313)
.|...-......-.++.....|.+++........ ......++..+.......|..+.|+..++..+++
T Consensus 104 ~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 104 EYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHH
Confidence 4433333334455788999999999988776532 2345667778888888999999999999999987
Q ss_pred HH
Q 000742 279 AQ 280 (1313)
Q Consensus 279 ~~ 280 (1313)
.-
T Consensus 184 n~ 185 (321)
T PF08424_consen 184 NF 185 (321)
T ss_pred Hc
Confidence 64
No 435
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=84.04 E-value=21 Score=42.58 Aligned_cols=47 Identities=15% Similarity=0.156 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHH
Q 000742 166 IDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSR 229 (1313)
Q Consensus 166 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~ 229 (1313)
...|..||.....+|+++-|.+.|+++-.. ..|..+|...|+.++=.
T Consensus 347 ~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~-----------------~~L~lLy~~~g~~~~L~ 393 (443)
T PF04053_consen 347 PEKWKQLGDEALRQGNIELAEECYQKAKDF-----------------SGLLLLYSSTGDREKLS 393 (443)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHHCT-H-----------------HHHHHHHHHCT-HHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhcCc-----------------cccHHHHHHhCCHHHHH
Confidence 357888888888888888888888877443 34556666777654433
No 436
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=83.69 E-value=1.5 Score=34.64 Aligned_cols=34 Identities=21% Similarity=0.183 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhc
Q 000742 69 PTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDAS 103 (1313)
Q Consensus 69 ~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~ 103 (1313)
+.++.+|..++++|+|++|..+. +.++++.|.+.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~-~~lL~~eP~N~ 35 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYC-DALLEIEPDNR 35 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHH-HHHHHHTTS-H
T ss_pred hhHHHHHHHHHHhhhHHHHHHHH-HHHHhhCCCcH
Confidence 46788999999999999999999 99999987764
No 437
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=82.48 E-value=23 Score=42.35 Aligned_cols=101 Identities=17% Similarity=0.169 Sum_probs=61.6
Q ss_pred HHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHH
Q 000742 177 MELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLG 256 (1313)
Q Consensus 177 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la 256 (1313)
.+.|+++.|.+.. ++. + ....|..||......|+++-|.++|+++-.. ..|.
T Consensus 329 l~lg~L~~A~~~a-------~~~---~----~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~--------------~~L~ 380 (443)
T PF04053_consen 329 LQLGNLDIALEIA-------KEL---D----DPEKWKQLGDEALRQGNIELAEECYQKAKDF--------------SGLL 380 (443)
T ss_dssp HHCT-HHHHHHHC-------CCC---S----THHHHHHHHHHHHHTTBHHHHHHHHHHCT-H--------------HHHH
T ss_pred HhcCCHHHHHHHH-------Hhc---C----cHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc--------------cccH
Confidence 4457777776543 321 1 2348999999999999999999999887554 3355
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHH
Q 000742 257 ELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELK 310 (1313)
Q Consensus 257 ~~~~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~ 310 (1313)
.+|...|+.+. +++..+++...++.. ..-..+.-+|++.+.+..+.+..
T Consensus 381 lLy~~~g~~~~----L~kl~~~a~~~~~~n-~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 381 LLYSSTGDREK----LSKLAKIAEERGDIN-IAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp HHHHHCT-HHH----HHHHHHHHHHTT-HH-HHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHhCCHHH----HHHHHHHHHHccCHH-HHHHHHHHcCCHHHHHHHHHHcC
Confidence 66777777643 334444444433322 22335666788877777766554
No 438
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=81.74 E-value=1.2e+02 Score=36.11 Aligned_cols=429 Identities=8% Similarity=-0.004 Sum_probs=196.0
Q ss_pred hHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHH
Q 000742 7 QMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKD 86 (1313)
Q Consensus 7 ~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~ 86 (1313)
-++++...|++....-|....+ +......-+...+|+.-.+.|.+++.-.-. -+++..| +..+....|+...
T Consensus 34 ~~~~~R~~YEq~~~~FP~s~r~--W~~yi~~El~skdfe~VEkLF~RCLvkvLn----lDLW~lY--l~YVR~~~~~~~~ 105 (656)
T KOG1914|consen 34 PIDKVRETYEQLVNVFPSSPRA--WKLYIERELASKDFESVEKLFSRCLVKVLN----LDLWKLY--LSYVRETKGKLFG 105 (656)
T ss_pred CHHHHHHHHHHHhccCCCCcHH--HHHHHHHHHHhhhHHHHHHHHHHHHHHHhh----HhHHHHH--HHHHHHHccCcch
Confidence 5778888888888887776666 666667777889999999999998865422 1223333 3334444555555
Q ss_pred HHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHhc-cCCcchhhHHHHHHHHHHHHHH----HHHhccCCCCCcch
Q 000742 87 ALIYQVKKHLELAKDA-SDLVEQQRACTQLGRTYYEMFL-RSDDDHYSIRNAKKYFKSAMKL----AQTLKENPATSRSS 160 (1313)
Q Consensus 87 A~~~~~~kal~l~~~~-~~~~~~a~a~~~lg~~y~~l~~-~~~~~~~~~~~A~~~~~~Al~l----~~~~~~~~~~~~~~ 160 (1313)
+.... -+|.+..-.. +........|...+......-. ..-.++.+.+.-...|++|+.. .+++-.+- .
T Consensus 106 ~r~~m-~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY-----~ 179 (656)
T KOG1914|consen 106 YREKM-VQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDY-----E 179 (656)
T ss_pred HHHHH-HHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHH-----H
Confidence 55555 5555543322 1000011122222222211100 0000113455555666666532 00000000 0
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhcc---------CCCchHHHHHHHHHHHHHHHcC------C-
Q 000742 161 FLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEV---------SEDDDGRSRLHHNLGNVYMELR------M- 224 (1313)
Q Consensus 161 ~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~~~~lg~~y~~~g------~- 224 (1313)
-...-......--.+-.....|..|...+++...+.+-+.. ..+.......|.++-..-...+ .
T Consensus 180 ~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~ 259 (656)
T KOG1914|consen 180 AFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTM 259 (656)
T ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccH
Confidence 00000001111111222334566666666665555433210 0111223344444433222211 0
Q ss_pred H-HHHHHHHHHHHHHHHHhch-hhhHHHHHHHHHHHHHHhcCHH-------HHHHHHHHHHHHHHHccChhHHHHHHHHh
Q 000742 225 W-DKSREHIEQDIIICKKIEH-CQGEAKGYINLGELHYRVQKYD-------EAILCYQKALNLAQSMEDEDALASQIDQN 295 (1313)
Q Consensus 225 ~-~~A~~~~~kal~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~-------~A~~~~~kal~~~~~~~~~~~~~~~~~~~ 295 (1313)
. ..-.-.|++++....-..+ ..+.+..+...+.++-..|+.+ +|...|+.+++..... ...+|..
T Consensus 260 ~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~------~~~Ly~~ 333 (656)
T KOG1914|consen 260 LTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE------NKLLYFA 333 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH------HHHHHHH
Confidence 1 1222344555554441111 1122333445556666666654 4555555555433221 2335555
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742 296 IETVKKAIEV---MDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASE 372 (1313)
Q Consensus 296 lg~~~~a~~~---~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~ 372 (1313)
+.++.++... +++....+..+..+. ..++. ..+-.+........-...|...+.++.+...
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~------~~~~t---------Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r- 397 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIE------DIDLT---------LVYCQYMNFIRRAEGLKAARKIFKKAREDKR- 397 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhh------ccCCc---------eehhHHHHHHHHhhhHHHHHHHHHHHhhccC-
Confidence 5555554443 333333332222211 00100 0112222222333333444444444433211
Q ss_pred hCCchhhHHHHHHHHH-HHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742 373 LCDKGKLSDSFLVIGE-SYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAV 451 (1313)
Q Consensus 373 ~~~~~~~a~~~~~lg~-~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~ 451 (1313)
.+. .+|..-|. -|+-+++++-|...|+-.++.++ +.+.. -......+...++-..|...|++++.-
T Consensus 398 ---~~h--hVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~---d~p~y---v~~YldfL~~lNdd~N~R~LFEr~l~s-- 464 (656)
T KOG1914|consen 398 ---TRH--HVFVAAALMEYYCSKDKETAFRIFELGLKKFG---DSPEY---VLKYLDFLSHLNDDNNARALFERVLTS-- 464 (656)
T ss_pred ---Ccc--hhhHHHHHHHHHhcCChhHHHHHHHHHHHhcC---CChHH---HHHHHHHHHHhCcchhHHHHHHHHHhc--
Confidence 111 23322222 24568999999999999886653 32222 233445667889999999999999875
Q ss_pred HcCChhHHHHHHHhhHHHHHHhhcCHHHHHHHHHH
Q 000742 452 EANLPSVQLSALENMHYSHMIRFDNIEEARRLQHE 486 (1313)
Q Consensus 452 ~~~~~~~~~~al~~L~~~~~~~~~~~~~a~~~~e~ 486 (1313)
.-.+.....++..+-. |....|+...+.++.+.
T Consensus 465 -~l~~~ks~~Iw~r~l~-yES~vGdL~si~~lekR 497 (656)
T KOG1914|consen 465 -VLSADKSKEIWDRMLE-YESNVGDLNSILKLEKR 497 (656)
T ss_pred -cCChhhhHHHHHHHHH-HHHhcccHHHHHHHHHH
Confidence 1222334456665553 33445665555555443
No 439
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=81.68 E-value=1.1e+02 Score=35.51 Aligned_cols=237 Identities=9% Similarity=0.052 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcc
Q 000742 50 WFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDD 129 (1313)
Q Consensus 50 ~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~ 129 (1313)
.|++++....-. .++|+.........++-++|++.. ++++...|...-......-+.+-...-.
T Consensus 290 ~~~q~~~y~~~~------~evw~dys~Y~~~isd~q~al~tv-~rg~~~spsL~~~lse~yel~nd~e~v~--------- 353 (660)
T COG5107 290 IHNQILDYFYYA------EEVWFDYSEYLIGISDKQKALKTV-ERGIEMSPSLTMFLSEYYELVNDEEAVY--------- 353 (660)
T ss_pred HHHHHHHHhhhh------HHHHHHHHHHHhhccHHHHHHHHH-HhcccCCCchheeHHHHHhhcccHHHHh---------
Q ss_pred hhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHH--------HHHHHHHcCCHHHHHHHHHHHHhHhhhhcc
Q 000742 130 HYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNN--------IGMLQMELDNLEEAKKFLIRGLEICNEEEV 201 (1313)
Q Consensus 130 ~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~--------la~~y~~~g~~~~A~~~~~~al~~~~~~~~ 201 (1313)
+-|++..+.+.+-......-..........+.|....-..+ .-..-.+..-.+.|...|.++-+.
T Consensus 354 -~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~------ 426 (660)
T COG5107 354 -GCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKE------ 426 (660)
T ss_pred -hhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhcc------
Q ss_pred CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 000742 202 SEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQS 281 (1313)
Q Consensus 202 ~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~ 281 (1313)
+.......++..+ .-|...|++.-|...|+-.+..++ +....-+..-..+...++-+.|...|++++....+
T Consensus 427 -~~~~h~vyi~~A~-~E~~~~~d~~ta~~ifelGl~~f~------d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~ 498 (660)
T COG5107 427 -GIVGHHVYIYCAF-IEYYATGDRATAYNIFELGLLKFP------DSTLYKEKYLLFLIRINDEENARALFETSVERLEK 498 (660)
T ss_pred -CCCCcceeeeHHH-HHHHhcCCcchHHHHHHHHHHhCC------CchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHH
Q ss_pred ccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000742 282 MEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRN 322 (1313)
Q Consensus 282 ~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~ 322 (1313)
. .+..+|..+-.+.-..+.+..+....+....+.++
T Consensus 499 ~-----q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 499 T-----QLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred h-----hhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
No 440
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=81.67 E-value=13 Score=34.75 Aligned_cols=76 Identities=13% Similarity=0.124 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000742 113 TQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRG 192 (1313)
Q Consensus 113 ~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~a 192 (1313)
..+|...... +++-.|+-+|++|+.+.+++...............+....++|..+..+|+.+-.++|++-|
T Consensus 5 tllAd~a~~~--------~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlA 76 (140)
T PF10952_consen 5 TLLADQAFKE--------ADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLA 76 (140)
T ss_pred HHHHHHHhhc--------ccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHH
Confidence 4555555544 88889999999999999888533322212222334567789999999999999999999888
Q ss_pred HhHh
Q 000742 193 LEIC 196 (1313)
Q Consensus 193 l~~~ 196 (1313)
-+..
T Consensus 77 SE~V 80 (140)
T PF10952_consen 77 SEKV 80 (140)
T ss_pred HHHH
Confidence 6653
No 441
>PRK10941 hypothetical protein; Provisional
Probab=81.53 E-value=6.1 Score=43.50 Aligned_cols=77 Identities=9% Similarity=-0.029 Sum_probs=68.0
Q ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcc
Q 000742 204 DDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSME 283 (1313)
Q Consensus 204 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~ 283 (1313)
+.....+...++-.+|...++++.|+.+.+..+.+.| +.+.-+...|.+|.++|.+..|..-++..++..|+.+
T Consensus 176 ~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P------~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp 249 (269)
T PRK10941 176 NIEVIRKLLDTLKAALMEEKQMELALRASEALLQFDP------EDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDP 249 (269)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCch
Confidence 3455678889999999999999999999999999987 6777788899999999999999999999999998766
Q ss_pred Chh
Q 000742 284 DED 286 (1313)
Q Consensus 284 ~~~ 286 (1313)
+..
T Consensus 250 ~a~ 252 (269)
T PRK10941 250 ISE 252 (269)
T ss_pred hHH
Confidence 543
No 442
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=81.32 E-value=16 Score=43.31 Aligned_cols=101 Identities=6% Similarity=0.031 Sum_probs=67.0
Q ss_pred HHHHhCCchhhHHHHHHHHHHHHHh--hCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000742 369 IASELCDKGKLSDSFLVIGESYQKL--RKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEG 446 (1313)
Q Consensus 369 i~~~~~~~~~~a~~~~~lg~~y~~~--g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kA 446 (1313)
+.-..+.-...+-++.+||.+-... ..-..++..|.+|+...+...+. ....-|..+|-.|++.++|.+|+.+|-+|
T Consensus 266 ~lyd~ghl~~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n-~HvYPYty~gg~~yR~~~~~eA~~~Wa~a 344 (618)
T PF05053_consen 266 LLYDMGHLARYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNN-HHVYPYTYLGGYYYRHKRYREALRSWAEA 344 (618)
T ss_dssp HHHHTTTTTT-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT---SHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHhcCchhhCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcC-CccccceehhhHHHHHHHHHHHHHHHHHH
Confidence 3334445555567777777765432 33567899999999998877653 34455788999999999999999999999
Q ss_pred HHHHHHcCChhHHHHHHHhhHHHH
Q 000742 447 YRIAVEANLPSVQLSALENMHYSH 470 (1313)
Q Consensus 447 l~i~~~~~~~~~~~~al~~L~~~~ 470 (1313)
-...++.+-......+|..+..+.
T Consensus 345 a~Vi~~YnY~reDeEiYKEfleIA 368 (618)
T PF05053_consen 345 ADVIRKYNYSREDEEIYKEFLEIA 368 (618)
T ss_dssp HHHHTTSB--GGGHHHHHHHHHHH
T ss_pred HHHHHHcccCccHHHHHHHHHHHH
Confidence 988877665555555666655544
No 443
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=81.07 E-value=2.8 Score=45.10 Aligned_cols=59 Identities=10% Similarity=0.085 Sum_probs=47.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742 173 GMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICK 240 (1313)
Q Consensus 173 a~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~ 240 (1313)
|.-....|+.++|...|+.|+++.+. ...++..+|......++.-+|-.+|-+|+.+.+
T Consensus 123 A~~~~~~Gk~ekA~~lfeHAlalaP~---------~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP 181 (472)
T KOG3824|consen 123 AGRSRKDGKLEKAMTLFEHALALAPT---------NPQILIEMGQFREMHNEIVEADQCYVKALTISP 181 (472)
T ss_pred HHHHHhccchHHHHHHHHHHHhcCCC---------CHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCC
Confidence 33335568999999999999998544 467888889888888899999999999998876
No 444
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=80.89 E-value=1.6e+02 Score=37.01 Aligned_cols=237 Identities=10% Similarity=0.047 Sum_probs=131.7
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHH-HHccChHHHHHHHHH
Q 000742 15 YRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVY-LRLEHFKDALIYQVK 93 (1313)
Q Consensus 15 l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y-~~~g~~~~A~~~~~~ 93 (1313)
++.-..++...... +..|-.++...|++++-...-.++.++++- .++++.-|. ....+ ...++-.++...| +
T Consensus 102 ~~ee~ai~~y~~~~--~v~Li~llrk~~dl~kl~~ar~~~~~~~pl---~~~lWl~Wl-~d~~~mt~s~~~~~v~~~~-e 174 (881)
T KOG0128|consen 102 LEEELAINSYKYAQ--MVQLIGLLRKLGDLEKLRQARLEMSEIAPL---PPHLWLEWL-KDELSMTQSEERKEVEELF-E 174 (881)
T ss_pred HHHHhcccccchHH--HHHHHHHHHHhcchHHHHHHHHHHHHhcCC---ChHHHHHHH-HHHHhhccCcchhHHHHHH-H
Confidence 33333444444344 677888888999988766666666566532 122222222 12222 2236777788888 8
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHH
Q 000742 94 KHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIG 173 (1313)
Q Consensus 94 kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la 173 (1313)
+++.-+.......+.+.-....+..+... ++++.-...|.+|+.-....... .-....+|...-
T Consensus 175 kal~dy~~v~iw~e~~~y~~~~~~~~~~~--------~d~k~~R~vf~ral~s~g~~~t~--------G~~~we~~~E~e 238 (881)
T KOG0128|consen 175 KALGDYNSVPIWEEVVNYLVGFGNVAKKS--------EDYKKERSVFERALRSLGSHITE--------GAAIWEMYREFE 238 (881)
T ss_pred HHhcccccchHHHHHHHHHHhcccccccc--------ccchhhhHHHHHHHhhhhhhhcc--------cHHHHHHHHHHH
Confidence 88866554443333333333333333322 77888888899888765443221 125567777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHH--HHH-HHcCCHHHHHHHHHHHHHHHHHh-chhhhHH
Q 000742 174 MLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLG--NVY-MELRMWDKSREHIEQDIIICKKI-EHCQGEA 249 (1313)
Q Consensus 174 ~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg--~~y-~~~g~~~~A~~~~~kal~~~~~~-~~~~~~~ 249 (1313)
..|...-..++-+.++...+..- -+.......|.... .++ ....+++.|.+-..+.+...... ...+...
T Consensus 239 ~~~l~n~~~~qv~a~~~~el~~~------~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~ 312 (881)
T KOG0128|consen 239 VTYLCNVEQRQVIALFVRELKQP------LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKD 312 (881)
T ss_pred HHHHHhHHHHHHHHHHHHHHhcc------chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 78877777788888888887762 12222233333332 222 23456666666655555554432 1122334
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 000742 250 KGYINLGELHYRVQKYDEAILCYQKALNLAQ 280 (1313)
Q Consensus 250 ~~~~~la~~~~~~g~~~~A~~~~~kal~~~~ 280 (1313)
..|..+-..-...|++..-...+++++.-.+
T Consensus 313 q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~ 343 (881)
T KOG0128|consen 313 QEWMSYIDFEKKSGDPVRIQLIEERAVAEMV 343 (881)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHhcc
Confidence 4455555666677777666666666665443
No 445
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=80.65 E-value=1e+02 Score=35.82 Aligned_cols=158 Identities=18% Similarity=0.080 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHHHhccCCcc--hhhHHHHHHHHHHHHHHHHHhccCCCCCc-----chhhHHHHHHHHHHHHHHHH
Q 000742 106 VEQQRACTQLGRTYYEMFLRSDDD--HYSIRNAKKYFKSAMKLAQTLKENPATSR-----SSFLKEYIDAHNNIGMLQME 178 (1313)
Q Consensus 106 ~~~a~a~~~lg~~y~~l~~~~~~~--~~~~~~A~~~~~~Al~l~~~~~~~~~~~~-----~~~~p~~~~~~~~la~~y~~ 178 (1313)
.+.+.+++++|.+|..++...... ......|..+|++|...++-+.+...... ....+....++..+.....+
T Consensus 108 fE~~~vLfn~aa~~s~~a~~~~~~~~~~~~k~A~~~fq~AAG~F~~l~~~~~~~~~~~~~~Dl~~~~l~~l~~l~LAqAQ 187 (345)
T cd09034 108 YELLSILFNLAALASQLANEKLITGSEEDLKQAIKSLQKAAGYFEYLKEHVLPLPPDELPVDLTEAVLSALSLIMLAQAQ 187 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccCCHHHHHHHHHHHHHHHH
Confidence 455677888998888775432221 46788999999999887766554322111 24556666666666655444
Q ss_pred cCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------HHHHhchhhh
Q 000742 179 LDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDII-----------ICKKIEHCQG 247 (1313)
Q Consensus 179 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~-----------~~~~~~~~~~ 247 (1313)
.--+.+| +.-- . ......+......+. .|++|...++..-. ..-.......
T Consensus 188 e~~~~ka-------~~~~-~----~~~~liakLa~~~~~------~y~~A~~~l~~~~~~~~~~~~~~w~~~v~~K~~~~ 249 (345)
T cd09034 188 ECFLLKA-------EEDK-K----AKLSLLARLACEAAK------YYEEALKCLSGVDLETIKNIPKKWLLFLKWKKCIF 249 (345)
T ss_pred HHHHHHH-------Hhcc-c----CcHHHHHHHHHHHHH------HHHHHHHHHhcCCchhhhhhhHHHHHHHHHHHHHH
Confidence 3333333 2210 0 001111122111111 13333333332110 0000112234
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 000742 248 EAKGYINLGELHYRVQKYDEAILCYQKALNLAQS 281 (1313)
Q Consensus 248 ~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~ 281 (1313)
.+.+++..|..+...+++-+|+.+++.|......
T Consensus 250 ~a~a~~~~a~~~~e~~~~G~aia~L~~A~~~~~~ 283 (345)
T cd09034 250 KALAYYYHGLKLDEANKIGEAIARLQAALELLKE 283 (345)
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHH
Confidence 5667778888888888888999998888876554
No 446
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=80.14 E-value=16 Score=34.18 Aligned_cols=69 Identities=16% Similarity=0.178 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCc-----hh----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742 383 FLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNL-----EG----QALAKVNMGNVLDSNGDWAGALDAFQEGYRIAV 451 (1313)
Q Consensus 383 ~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~-----~~----~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~ 451 (1313)
+..+|....+.+++-.|+-+|++|+.+..++... .+ ......+||..+..+|+.+=.++|++-|-+.-.
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vl 81 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVL 81 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 4567888889999999999999999998877421 11 133567899999999999999999998876443
No 447
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=78.77 E-value=1.5 Score=25.51 Aligned_cols=13 Identities=62% Similarity=0.797 Sum_probs=5.7
Q ss_pred CcCEEEecCCCCC
Q 000742 918 RLGVLNLSGNRLT 930 (1313)
Q Consensus 918 ~L~~L~Ls~n~l~ 930 (1313)
+|+.|+|++|+|+
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4556666665554
No 448
>PRK10941 hypothetical protein; Provisional
Probab=78.56 E-value=10 Score=41.84 Aligned_cols=77 Identities=13% Similarity=0.019 Sum_probs=66.0
Q ss_pred cCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHH
Q 000742 22 GNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKD 101 (1313)
Q Consensus 22 ~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~ 101 (1313)
.+.....+.+.++-.+|...++++.|++..+..+.+.+.. +.-+...|.+|.++|.+..|...+ +..++..|+
T Consensus 175 ~~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~d------p~e~RDRGll~~qL~c~~~A~~DL-~~fl~~~P~ 247 (269)
T PRK10941 175 DNIEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPED------PYEIRDRGLIYAQLDCEHVALSDL-SYFVEQCPE 247 (269)
T ss_pred CHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcHHHHHHH-HHHHHhCCC
Confidence 4445567888999999999999999999999999987432 566778999999999999999999 999999887
Q ss_pred hcCH
Q 000742 102 ASDL 105 (1313)
Q Consensus 102 ~~~~ 105 (1313)
.++.
T Consensus 248 dp~a 251 (269)
T PRK10941 248 DPIS 251 (269)
T ss_pred chhH
Confidence 7654
No 449
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=77.66 E-value=1.7e+02 Score=35.45 Aligned_cols=107 Identities=12% Similarity=0.042 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742 162 LKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLH-HNLGNVYMELRMWDKSREHIEQDIIICK 240 (1313)
Q Consensus 162 ~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~~lg~~y~~~g~~~~A~~~~~kal~~~~ 240 (1313)
.|.....|...|..-.+.|..+.+.+.|++++..++- ....| ..++.+--..|+.+.-...|++|.....
T Consensus 75 yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~---------SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG 145 (577)
T KOG1258|consen 75 YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPL---------SVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVG 145 (577)
T ss_pred CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhh---------HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcc
Confidence 4566778888999999999999999999999987543 23333 3344444566788887777888777643
Q ss_pred HhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 000742 241 KIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQ 280 (1313)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~ 280 (1313)
. .......|-..-..-..++++..-...|++.+++-.
T Consensus 146 ~---dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~ 182 (577)
T KOG1258|consen 146 L---DFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPL 182 (577)
T ss_pred c---chhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhh
Confidence 1 122222333333334566777777777777776543
No 450
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=77.41 E-value=1.1e+02 Score=34.94 Aligned_cols=162 Identities=7% Similarity=-0.031 Sum_probs=96.4
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHhC------------CHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHc
Q 000742 14 AYRSAKEEGNRQEEARWANVIGDILKNRG------------EYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRL 81 (1313)
Q Consensus 14 ~l~~a~~~~~~~~~a~~~~~lg~~y~~~g------------~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 81 (1313)
-|.+.++.+|.+..+ +..+...--..- -.+..+.+|++|++..+ .....+..+-......
T Consensus 7 el~~~v~~~P~di~~--Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np------~~~~L~l~~l~~~~~~ 78 (321)
T PF08424_consen 7 ELNRRVRENPHDIEA--WLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP------DSERLLLGYLEEGEKV 78 (321)
T ss_pred HHHHHHHhCcccHHH--HHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHh
Confidence 456666677776555 545544432221 14566778888887732 2233333333444455
Q ss_pred cChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCC---CCCc
Q 000742 82 EHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENP---ATSR 158 (1313)
Q Consensus 82 g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~---~~~~ 158 (1313)
.+.++..+-+ ++++...+... ..-..|...-...... -.++.....|.+++.......... ....
T Consensus 79 ~~~~~l~~~w-e~~l~~~~~~~---~LW~~yL~~~q~~~~~--------f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~ 146 (321)
T PF08424_consen 79 WDSEKLAKKW-EELLFKNPGSP---ELWREYLDFRQSNFAS--------FTVSDVRDVYEKCLRALSRRRSGRMTSHPDL 146 (321)
T ss_pred CCHHHHHHHH-HHHHHHCCCCh---HHHHHHHHHHHHHhcc--------CcHHHHHHHHHHHHHHHHHhhccccccccch
Confidence 5666666667 77777654422 1112222211111111 457788888999888776654432 1111
Q ss_pred chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhH
Q 000742 159 SSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEI 195 (1313)
Q Consensus 159 ~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 195 (1313)
......+..++..+.....+.|..+.|+..++-.+++
T Consensus 147 ~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 147 PELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred hhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHH
Confidence 2334567788888999999999999999999999987
No 451
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=77.15 E-value=73 Score=38.16 Aligned_cols=56 Identities=14% Similarity=0.135 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhh
Q 000742 134 RNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEE 199 (1313)
Q Consensus 134 ~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~ 199 (1313)
..++..|.+|+..++...+.. ...-|..+|..|++.++|.+|+.++-+|-......
T Consensus 296 ~~~~~l~~~AI~sa~~~Y~n~----------HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~Y 351 (618)
T PF05053_consen 296 PTPLELFNEAISSARTYYNNH----------HVYPYTYLGGYYYRHKRYREALRSWAEAADVIRKY 351 (618)
T ss_dssp --HHHHHHHHHHHHHHHCTT------------SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHHHhcCC----------ccccceehhhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 356777888888777765542 34567778888888888888888888777765553
No 452
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.72 E-value=1.1e+02 Score=33.40 Aligned_cols=147 Identities=16% Similarity=0.116 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHH
Q 000742 9 SEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDAL 88 (1313)
Q Consensus 9 ~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~ 88 (1313)
+.++..++..++.++..+.-..|..+...|.....++.|++..-.+....-+..+....+.....+..+|.. ..+....
T Consensus 7 ~R~e~kl~a~~~~~d~Yeahqm~RTl~fR~~~~K~~~~aieL~~~ga~~ffk~~Q~~saaDl~~~~le~~ek-a~~ad~~ 85 (312)
T KOG3024|consen 7 QRVEGKLRASIELGDYYEAHQMYRTLVFRYTRQKAHEDAIELLYDGALCFFKLKQRGSAADLLVLVLEVLEK-AEVADSL 85 (312)
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHH-HHhhHhH
Confidence 334444444455555555555677777778887888888776655554443333333344444455554433 0000000
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHH
Q 000742 89 IYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDA 168 (1313)
Q Consensus 89 ~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~ 168 (1313)
.. ..+++.+.... + ..-.+-..+.+.++++..+..... -..+..
T Consensus 86 ~~---------------------~anl~~ll~e~------~-~~eper~~~v~raikWS~~~~~~k--------~G~p~l 129 (312)
T KOG3024|consen 86 LK---------------------VANLAELLGEA------D-PSEPERKTFVRRAIKWSKEFGEGK--------YGHPEL 129 (312)
T ss_pred HH---------------------HHHHHHHHhhc------C-CCccHHHHHHHHHHHHHhhcCCCC--------CCCHHH
Confidence 00 12333333322 0 122234566778888877753221 145788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 000742 169 HNNIGMLQMELDNLEEAKKFLIRG 192 (1313)
Q Consensus 169 ~~~la~~y~~~g~~~~A~~~~~~a 192 (1313)
+..+|..+...+++.+|..+|-.+
T Consensus 130 H~~la~~l~~e~~~~~a~~HFll~ 153 (312)
T KOG3024|consen 130 HALLADKLWTEDNVEEARRHFLLS 153 (312)
T ss_pred HHHHHHHHHhcccHHHHHhHhhhc
Confidence 999999999999999999999776
No 453
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=76.64 E-value=33 Score=32.90 Aligned_cols=71 Identities=13% Similarity=0.021 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhc
Q 000742 28 ARWANVIGDILKNRGE---YVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDAS 103 (1313)
Q Consensus 28 a~~~~~lg~~y~~~g~---~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~ 103 (1313)
....+.++.++....+ ..+.+..++..++ ..++...-+..+.++..+++.++|++|+.|. ...++.-|++.
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~----~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yv-d~ll~~e~~n~ 105 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLK----SAHPERRRECLYYLAVGHYRLKEYSKSLRYV-DALLETEPNNR 105 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhh----hcCcccchhhhhhhHHHHHHHhhHHHHHHHH-HHHHhhCCCcH
Confidence 3447788888876654 4556666666655 1233445678899999999999999999999 88888766543
No 454
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=76.56 E-value=27 Score=31.26 Aligned_cols=75 Identities=17% Similarity=0.084 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHH
Q 000742 11 AKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIY 90 (1313)
Q Consensus 11 A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~ 90 (1313)
.+..++++++.+|....+ .+.+|..+...|++++|++.+-.++...+.. ....+...+-.++..+|.-+....-
T Consensus 7 ~~~al~~~~a~~P~D~~a--r~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~----~~~~ar~~ll~~f~~lg~~~plv~~ 80 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDA--RYALADALLAAGDYEEALDQLLELVRRDRDY----EDDAARKRLLDIFELLGPGDPLVSE 80 (90)
T ss_dssp HHHHHHHHHHHSTT-HHH--HHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC----CCCHHHHHHHHHHHHH-TT-HHHHH
T ss_pred cHHHHHHHHHcCCCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHhCccc----cccHHHHHHHHHHHHcCCCChHHHH
Confidence 345678888888988777 7899999999999999999998887765332 1233444455555555554433333
Q ss_pred H
Q 000742 91 Q 91 (1313)
Q Consensus 91 ~ 91 (1313)
|
T Consensus 81 ~ 81 (90)
T PF14561_consen 81 Y 81 (90)
T ss_dssp H
T ss_pred H
Confidence 3
No 455
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=76.55 E-value=3.1 Score=27.23 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=12.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHH
Q 000742 423 KVNMGNVLDSNGDWAGALDAFQ 444 (1313)
Q Consensus 423 ~~~lg~~y~~~g~~~~A~~~~~ 444 (1313)
.+.+|.++...|++++|...++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 4555666666666666655543
No 456
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=76.26 E-value=84 Score=36.87 Aligned_cols=65 Identities=18% Similarity=0.013 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHH--HHHHHccChHHHHHHHHHHHHHH
Q 000742 29 RWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLG--EVYLRLEHFKDALIYQVKKHLEL 98 (1313)
Q Consensus 29 ~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg--~~y~~~g~~~~A~~~~~~kal~l 98 (1313)
......+..++..++|..|.+.+....... .+... ...+..+. .-+...-+|++|.+++ ++.+..
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl---~~~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l-~~~~~~ 198 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRRL---PGREE-YQRYKDLCEGYDAWDRFDHKEALEYL-EKLLKR 198 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---Cchhh-HHHHHHHHHHHHHHHccCHHHHHHHH-HHHHHH
Confidence 445567778889999999999999987641 12121 44555554 4456678899999999 887765
No 457
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=75.98 E-value=3 Score=27.31 Aligned_cols=24 Identities=8% Similarity=0.051 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHH
Q 000742 381 DSFLVIGESYQKLRKFNKAIKWYT 404 (1313)
Q Consensus 381 ~~~~~lg~~y~~~g~~~~A~~~~~ 404 (1313)
.++..+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467789999999999999998875
No 458
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=75.92 E-value=2.1e+02 Score=35.55 Aligned_cols=56 Identities=16% Similarity=0.062 Sum_probs=31.3
Q ss_pred hhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000742 393 LRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIA 450 (1313)
Q Consensus 393 ~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~ 450 (1313)
.|+..+|.+.++-.+--...-+......-+++.+|.++..-|+- +.+|+.+-++-.
T Consensus 370 ~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~--~~~yL~~~Lk~~ 425 (929)
T KOG2062|consen 370 RGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRG--ITDYLLQQLKTA 425 (929)
T ss_pred ccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCcc--HHHHHHHHHHhc
Confidence 46666666555544421111122344566777888777766654 677776666543
No 459
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=75.91 E-value=4.5e+02 Score=39.32 Aligned_cols=388 Identities=11% Similarity=0.044 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 000742 33 VIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRAC 112 (1313)
Q Consensus 33 ~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~ 112 (1313)
..|..|.+.|.+++|...|++|.....+...+-...+..++.=..-.-..+..+ |.-..+..+..++ +
T Consensus 2487 ~~a~s~eQ~G~~e~AQ~lyekaq~Ka~~~~~~~~~~Ey~lWed~WI~Ca~eL~Q-----Wdvl~e~~k~~~~-------~ 2554 (3550)
T KOG0889|consen 2487 MVALSYEQLGFWEEAQSLYEKAQVKAREGAIPYSESEYKLWEDHWIRCASELQQ-----WDVLTEFGKHEGN-------Y 2554 (3550)
T ss_pred HHHHHHHHhhhHHHHhhHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhccCC-------c
Q ss_pred HHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000742 113 TQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRG 192 (1313)
Q Consensus 113 ~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~a 192 (1313)
..+-.+.... .++..-.+.+.++..-....... ......+|..+-..+.+ ...+......++
T Consensus 2555 ~llle~aWrl--------sdw~~~~~~l~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~--~~~~~~~~i~e~ 2616 (3550)
T KOG0889|consen 2555 ELLLECAWRL--------SDWNDQKDALEQKAKSLSDVPGF--------RKELYDAFLALQKKNSN--GVGEFERLIGEA 2616 (3550)
T ss_pred eeeeehhccC--------CcchhHHHHHHHhhhccCCCCcH--------HHHHHHHHHHHHHHHhh--hhhHHHHHHHHH
Q ss_pred HhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh--------cC
Q 000742 193 LEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRV--------QK 264 (1313)
Q Consensus 193 l~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~--------g~ 264 (1313)
++..-. +....+......+.-+-......-+..+|...+..-.... ..+....+.-.-.+....... +.
T Consensus 2617 ~~l~i~-~w~~lP~~v~~~h~~lL~~~QqivEl~Ea~~I~s~l~~~n--~~n~~~~~~d~Ksil~~Wr~RlP~~~Dd~~~ 2693 (3550)
T KOG0889|consen 2617 IQLAIR-EWRQLPERVNHGHVPLLQAFQQIVELQEAAQIYSDLNDGN--VQNLDNKAQDIKSILQTWRDRLPNVWDDMNQ 2693 (3550)
T ss_pred HHHHHH-HHHhCccccchhhHHHHHHHHHHHHHHHHHHHHHhccccc--ccccchhHHHHHHHHHHHhhcCCCcchhHHH
Q ss_pred HHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHH
Q 000742 265 YDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNASLD 344 (1313)
Q Consensus 265 ~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~~l~ 344 (1313)
+..=+.+-+.+..+..+...........-.+-+..+.......++........+ ..+.++.....+...-++-
T Consensus 2694 Wsdl~~WRq~~y~~I~~~~~~~~~~~~~~~ns~~~~~Gyhe~A~~in~fakvAr-------kh~l~~vcl~~L~~iytlp 2766 (3550)
T KOG0889|consen 2694 WSDLITWRQHAYSMINKAYLPLVPYKQNASNSNNLYRGYHELAWAINRFAKVAR-------KHGLPDVCLNQLAKIYTLP 2766 (3550)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchhhhccCCcchHHHhHHHHHHHHHHHHHHHH-------hcCChHHHHHHHHHHhccC
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhh----------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhC
Q 000742 345 RLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKL----------SDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIG 414 (1313)
Q Consensus 345 ~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~----------a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~ 414 (1313)
+..-.....+--+++..+++...++...+..-... ++.+...|....+.|++++|-..|..|+++..
T Consensus 2767 ~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~--- 2843 (3550)
T KOG0889|consen 2767 NVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDD--- 2843 (3550)
T ss_pred cchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHh---
Q ss_pred CchhHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHHHHHcCChhHHHHHHHhh
Q 000742 415 NLEGQALAKVNMGNVLDSNGDWA--------GALDAFQEGYRIAVEANLPSVQLSALENM 466 (1313)
Q Consensus 415 ~~~~~~~~~~~lg~~y~~~g~~~--------~A~~~~~kAl~i~~~~~~~~~~~~al~~L 466 (1313)
....+|...|......=+-+ .|+.+|-+|.........++..+.++.-|
T Consensus 2844 ---~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~~skaRk~iakvLwLl 2900 (3550)
T KOG0889|consen 2844 ---GLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYNSSKARKLIAKVLWLL 2900 (3550)
T ss_pred ---hhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccccchhhHHHHHHHHHHH
No 460
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=75.46 E-value=3.5 Score=48.62 Aligned_cols=68 Identities=24% Similarity=0.176 Sum_probs=38.5
Q ss_pred cCCCcccEEEccCCCCChhHHHHHHHHHhcCCCccEEEccCC--CCChHHHHHHHHHhcCCCCceeEEEeecCCCCH
Q 000742 1055 SRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGN--PIMKEGANALASLLMNPQCCLKVLVLSKCQLGL 1129 (1313)
Q Consensus 1055 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N--~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~ 1129 (1313)
.+.+.+..++|++|+|-.... +.......|.|+.|+||+| .+.. ...+.+.- .-.|++|.|.||.|..
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~--~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k---~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDA--LSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLK---GLPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhchhh--hhHHHHhcchhheeecccchhhhcc--hhhhhhhc---CCCHHHeeecCCcccc
Confidence 444667777777777654421 2323345677888888888 3332 22222221 1137888888887653
No 461
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=75.10 E-value=0.52 Score=29.53 Aligned_cols=12 Identities=67% Similarity=0.880 Sum_probs=7.0
Q ss_pred cCEEEecCCCCC
Q 000742 919 LGVLNLSGNRLT 930 (1313)
Q Consensus 919 L~~L~Ls~n~l~ 930 (1313)
|++|||++|.|+
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 555666665555
No 462
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=74.45 E-value=41 Score=28.29 Aligned_cols=30 Identities=17% Similarity=0.357 Sum_probs=23.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000742 423 KVNMGNVLDSNGDWAGALDAFQEGYRIAVE 452 (1313)
Q Consensus 423 ~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~ 452 (1313)
+...|.-+...|++++|+.+|.+|++....
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~ 37 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEAIEYLMQ 37 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 444566677889999999999999987654
No 463
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=74.45 E-value=10 Score=32.81 Aligned_cols=61 Identities=25% Similarity=0.198 Sum_probs=37.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhHHHHHHhhcCHHHHHHHHHHHHHHHhh
Q 000742 423 KVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMIRFDNIEEARRLQHEIDKLKES 493 (1313)
Q Consensus 423 ~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~~~~~~al~~L~~~~~~~~~~~~~a~~~~e~~~~l~~s 493 (1313)
+...|..+...|+.++|+.+|+++++...+.-.-+.. ....+...+.|.++++.+..-...
T Consensus 11 ~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~----------~~~~~~~w~~ar~~~~Km~~~~~~ 71 (79)
T cd02679 11 EISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVP----------SAGVGSQWERARRLQQKMKTNLNM 71 (79)
T ss_pred HHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCC----------cccccHHHHHHHHHHHHHHHHHHH
Confidence 4445555667799999999999999987663221110 011233456777777777655433
No 464
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=74.41 E-value=1.2e+02 Score=35.30 Aligned_cols=70 Identities=13% Similarity=0.198 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHhccC-CcchhhHHHHHHHHHHHHHHHHHhccCCCC---CcchhhHHHHHHHHHHHHH
Q 000742 106 VEQQRACTQLGRTYYEMFLRS-DDDHYSIRNAKKYFKSAMKLAQTLKENPAT---SRSSFLKEYIDAHNNIGML 175 (1313)
Q Consensus 106 ~~~a~a~~~lg~~y~~l~~~~-~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~---~~~~~~p~~~~~~~~la~~ 175 (1313)
.+.+.+++++|.+|..++... .......++|..+|++|-..+.-+.+.... ......+....++..+...
T Consensus 103 fEka~VLfNigal~sq~a~~~~~~~~~glK~A~~~fq~AAG~F~~l~~~~~~~~~~s~Dl~~~~l~~L~~lmLA 176 (355)
T cd09241 103 FERANILYNLGALYSQLALSENRYTDEGLKRACSYFQASAGCFEYILQHLLPTLSPPPDLDENTLKALESLMLA 176 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCHHHHHHHHHHHHH
Confidence 456678889999988875332 222366889999999998877665543211 1123455666666666554
No 465
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.11 E-value=2.2e+02 Score=36.96 Aligned_cols=31 Identities=19% Similarity=0.146 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 000742 249 AKGYINLGELHYRVQKYDEAILCYQKALNLA 279 (1313)
Q Consensus 249 ~~~~~~la~~~~~~g~~~~A~~~~~kal~~~ 279 (1313)
..-|..|+.+|...|++++|++.+.+...-.
T Consensus 504 ~~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~ 534 (877)
T KOG2063|consen 504 SKKYRELIELYATKGMHEKALQLLRDLVDED 534 (877)
T ss_pred cccHHHHHHHHHhccchHHHHHHHHHHhccc
Confidence 4457889999999999999999999887733
No 466
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=73.89 E-value=8 Score=29.20 Aligned_cols=26 Identities=23% Similarity=0.357 Sum_probs=20.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000742 423 KVNMGNVLDSNGDWAGALDAFQEGYR 448 (1313)
Q Consensus 423 ~~~lg~~y~~~g~~~~A~~~~~kAl~ 448 (1313)
.+.+|.+|..+|+++.|...+++.+.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 35788888888888888888888774
No 467
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=73.85 E-value=29 Score=33.38 Aligned_cols=87 Identities=14% Similarity=0.094 Sum_probs=59.9
Q ss_pred CCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHH
Q 000742 180 DNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELH 259 (1313)
Q Consensus 180 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~ 259 (1313)
+.-..-...+++++..+...+...+++....+|...+.... .+.+.|+..... +-....+..|...|..+
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~------~~~~if~~l~~~----~IG~~~A~fY~~wA~~l 109 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS------DPREIFKFLYSK----GIGTKLALFYEEWAEFL 109 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS------HHHHHHHHHHHH----TTSTTBHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc------CHHHHHHHHHHc----CccHHHHHHHHHHHHHH
Confidence 45555677888888887654333556666677766665332 666666654432 22347788999999999
Q ss_pred HHhcCHHHHHHHHHHHH
Q 000742 260 YRVQKYDEAILCYQKAL 276 (1313)
Q Consensus 260 ~~~g~~~~A~~~~~kal 276 (1313)
...|++++|.+.|++++
T Consensus 110 e~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 110 EKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHTT-HHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHhhC
Confidence 99999999999999875
No 468
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=73.69 E-value=1.5e+02 Score=32.81 Aligned_cols=117 Identities=15% Similarity=0.096 Sum_probs=65.4
Q ss_pred HHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccC
Q 000742 74 LGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKEN 153 (1313)
Q Consensus 74 lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~ 153 (1313)
+-+.-.+..+..+-++.. ..|+++.++. +.+|..++.--. .-..+|.+.+++|++..+....
T Consensus 190 IMQ~AWRERnp~~RI~~A-~~ALeIN~eC------A~AyvLLAEEEa----------~Ti~~AE~l~k~ALka~e~~yr- 251 (556)
T KOG3807|consen 190 IMQKAWRERNPPARIKAA-YQALEINNEC------ATAYVLLAEEEA----------TTIVDAERLFKQALKAGETIYR- 251 (556)
T ss_pred HHHHHHHhcCcHHHHHHH-HHHHhcCchh------hhHHHhhhhhhh----------hhHHHHHHHHHHHHHHHHHHHh-
Confidence 334444555666667777 7788776544 234444444322 4566888888888877543211
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000742 154 PATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIE 233 (1313)
Q Consensus 154 ~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~ 233 (1313)
........|...+|.. + .+......+...+|.+..++|+..+|++.++
T Consensus 252 ------------------~sqq~qh~~~~~da~~----------r----RDtnvl~YIKRRLAMCARklGrlrEA~K~~R 299 (556)
T KOG3807|consen 252 ------------------QSQQCQHQSPQHEAQL----------R----RDTNVLVYIKRRLAMCARKLGRLREAVKIMR 299 (556)
T ss_pred ------------------hHHHHhhhccchhhhh----------h----cccchhhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 1111111122111111 0 2233355666778888888888888888887
Q ss_pred HHHHHHH
Q 000742 234 QDIIICK 240 (1313)
Q Consensus 234 kal~~~~ 240 (1313)
...+-.+
T Consensus 300 DL~ke~p 306 (556)
T KOG3807|consen 300 DLMKEFP 306 (556)
T ss_pred HHhhhcc
Confidence 6655433
No 469
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=73.44 E-value=20 Score=34.24 Aligned_cols=72 Identities=15% Similarity=0.171 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccC
Q 000742 209 SRLHHNLGNVYMELRM---WDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMED 284 (1313)
Q Consensus 209 ~~~~~~lg~~y~~~g~---~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~ 284 (1313)
....+++|.+.....+ ..+.+..++..++ ..++...-...+.||..|++.++|++|+.|....++..|+...
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~----~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLK----SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhh----hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 4456677777766554 4566666666655 1233456677889999999999999999999999998776543
No 470
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=72.85 E-value=1.2e+02 Score=35.57 Aligned_cols=66 Identities=14% Similarity=0.121 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHH
Q 000742 70 TCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKL 146 (1313)
Q Consensus 70 ~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l 146 (1313)
-....+...+..++|..|...+ ...... .+.... ...+..+...|..+ +.-++++|.+++++.+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l-~~l~~r---l~~~~~-~~~~~~l~~~y~~W------D~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARIL-EELLRR---LPGREE-YQRYKDLCEGYDAW------DRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHH-HHHHHh---CCchhh-HHHHHHHHHHHHHH------HccCHHHHHHHHHHHHHH
Confidence 3445667778899999999999 887764 222222 45678888888877 667888999999887765
No 471
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.60 E-value=1.7e+02 Score=32.83 Aligned_cols=90 Identities=9% Similarity=-0.051 Sum_probs=54.0
Q ss_pred HHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchh-------------------
Q 000742 185 AKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHC------------------- 245 (1313)
Q Consensus 185 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~------------------- 245 (1313)
+-..|+++.+..++. ......-.+-|.++...++|.+....+..+-...++..|.
T Consensus 40 ~~~~y~Q~~q~~kk~------~~~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDN 113 (449)
T COG3014 40 PKKAYEQSKQFTKKK------KNALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDN 113 (449)
T ss_pred chhHHHHHHHhhhhh------hHHHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccc
Confidence 344566666665542 1123333556889999999988888887766655543221
Q ss_pred --------hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 000742 246 --------QGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQ 280 (1313)
Q Consensus 246 --------~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~ 280 (1313)
.......+.+|.-|....+++.|.--+.+|....+
T Consensus 114 i~~Y~g~~YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan~rQ~ 156 (449)
T COG3014 114 VRAYGGNIYEGVLINYYKALNYMLLNDSAKARVEFNRANERQR 156 (449)
T ss_pred hhhcCchhHHHHHHHHHHHhhHHHhcchhhhHHHHHHHHHHHH
Confidence 12233444556666777777777777777665543
No 472
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.25 E-value=1.5e+02 Score=37.77 Aligned_cols=189 Identities=9% Similarity=0.012 Sum_probs=0.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHH
Q 000742 174 MLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYI 253 (1313)
Q Consensus 174 ~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~ 253 (1313)
.+|...|+|++|+++....-+. .-.++...|..|+..++|..|-++|-+..+-++..--......-..
T Consensus 366 k~yLd~g~y~kAL~~ar~~p~~------------le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~FEEVaLKFl~~~~~~ 433 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTRPDA------------LETVLLKQADFLFQDKEYLRAAEIYAETLSSFEEVALKFLEINQER 433 (911)
T ss_pred HHHHhcchHHHHHHhccCCHHH------------HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHhcCCHH
Q ss_pred HHHHHHH-HhcCHHHHHHHHHHHHHHHHHccChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchH
Q 000742 254 NLGELHY-RVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQE 332 (1313)
Q Consensus 254 ~la~~~~-~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~ 332 (1313)
.|..+.. ++.++....+.-..++... -....+.++-.-.....++...++.-.+..+................+-
T Consensus 434 ~L~~~L~KKL~~lt~~dk~q~~~Lv~W----Llel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nret 509 (911)
T KOG2034|consen 434 ALRTFLDKKLDRLTPEDKTQRDALVTW----LLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRET 509 (911)
T ss_pred HHHHHHHHHHhhCChHHHHHHHHHHHH----HHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Q 000742 333 RKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTK 405 (1313)
Q Consensus 333 a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~k 405 (1313)
..+++........+...+..+++|+- +-..+.+.++|++|++.+..
T Consensus 510 v~~l~~~~~~~e~ll~fA~l~~d~~~---------------------------vv~~~~q~e~yeeaLevL~~ 555 (911)
T KOG2034|consen 510 VYQLLASHGRQEELLQFANLIKDYEF---------------------------VVSYWIQQENYEEALEVLLN 555 (911)
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHHh
No 473
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.20 E-value=1.3e+02 Score=39.15 Aligned_cols=139 Identities=18% Similarity=0.115 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHH------HccC----hHHHHHHHHHHHHHHHH
Q 000742 31 ANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYL------RLEH----FKDALIYQVKKHLELAK 100 (1313)
Q Consensus 31 ~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~------~~g~----~~~A~~~~~~kal~l~~ 100 (1313)
-+.+|.+|...|+..+|+..|.+|..-..+ ..++..+..... ..|+ ...|++|| .+++++..
T Consensus 923 rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge-------~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYY-lkv~rlle 994 (1480)
T KOG4521|consen 923 RFMLGIAYLGTGEPVKALNCFQSALSGFGE-------GNALRKLVYFLLPKRFSVADGKTPSEELTALHYY-LKVVRLLE 994 (1480)
T ss_pred HHhhheeeecCCchHHHHHHHHHHhhcccc-------HHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHH-HHHHHHHH
Confidence 457888888889999999999888654311 223332222110 2232 13367788 88887776
Q ss_pred HhcCHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcC
Q 000742 101 DASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELD 180 (1313)
Q Consensus 101 ~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g 180 (1313)
..+ -.+.+++...+|++. +.+. .|..+..+..+-.-+..+|
T Consensus 995 ~hn----------------------------~~E~vcQlA~~AIe~---l~dd--------~ps~a~~~t~vFnhhldlg 1035 (1480)
T KOG4521|consen 995 EHN----------------------------HAEEVCQLAVKAIEN---LPDD--------NPSVALISTTVFNHHLDLG 1035 (1480)
T ss_pred Hhc----------------------------cHHHHHHHHHHHHHh---CCCc--------chhHHHHHHHHHHhhhchh
Confidence 543 233444444444433 2222 3566777777778888888
Q ss_pred CHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHH
Q 000742 181 NLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWD 226 (1313)
Q Consensus 181 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~ 226 (1313)
.+-+|...+-+- .+....-..+..+-.+....|+++
T Consensus 1036 h~~qAy~ai~~n----------pdserrrdcLRqlvivLfecg~l~ 1071 (1480)
T KOG4521|consen 1036 HWFQAYKAILRN----------PDSERRRDCLRQLVIVLFECGELE 1071 (1480)
T ss_pred hHHHHHHHHHcC----------CcHHHHHHHHHHHHHHHHhccchH
Confidence 888887654332 234445566777777777777765
No 474
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.05 E-value=1.6e+02 Score=35.42 Aligned_cols=103 Identities=9% Similarity=0.046 Sum_probs=74.7
Q ss_pred cCCHHHHHHHHHHHHhHhhhhc---cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchh----------
Q 000742 179 LDNLEEAKKFLIRGLEICNEEE---VSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHC---------- 245 (1313)
Q Consensus 179 ~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~---------- 245 (1313)
...|++|...|.-|....+... .-...|.....+..++.+...+|+.+-|....++++-.+...-..
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 4568899999998888765422 123457788899999999999999999999999998777653110
Q ss_pred --------hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 000742 246 --------QGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQS 281 (1313)
Q Consensus 246 --------~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~ 281 (1313)
.....+++..-.-..+.|=+..|.++.+-.+.+.+.
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~ 374 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPS 374 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCc
Confidence 111223333334455778899999999999998876
No 475
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=71.61 E-value=5 Score=47.37 Aligned_cols=132 Identities=21% Similarity=0.196 Sum_probs=70.3
Q ss_pred CCCCCHHHHHHHHHHHHhcccCccceEEEccCCCCCHHHHHHHHhcccCCCCcCEEEecCCCCChhHHH-HHHHHHhcCC
Q 000742 867 HNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGS-YLSTILKNCK 945 (1313)
Q Consensus 867 ~n~l~~~~~~~L~~~l~~~~~~~~l~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~-~l~~~l~~~~ 945 (1313)
.+.++.+.++.+...+.. .....-+.|||++=+..+.-.. -|+-.+-....++- .+-..-.+.+
T Consensus 154 ~~~lkpe~IE~l~~v~~k-Ryd~~~~~LDL~nl~~DPel~~--------------~di~~~l~~rn~M~~~L~~~~~n~p 218 (585)
T KOG3763|consen 154 HNKLKPEEIEILKLVMNK-RYDVSQQALDLQNLRFDPELVN--------------RDILMVLNKRNCMAAVLKHIEENFP 218 (585)
T ss_pred hcccCHHHHHHHHHHHhc-cccHHHhhhhhhccccChhhhh--------------ccchhhcccchhhHHHHHHhhcCCc
Confidence 445677777777765432 2233445678777666544331 11111111111111 1211223566
Q ss_pred CCcEEEeecCCCCHHHHHHHHHHHhcCCCccEEEeCCCCCCChhhHHHHHHhhccCCccceeecCCCCCChHH
Q 000742 946 VLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPV 1018 (1313)
Q Consensus 946 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~ 1018 (1313)
.+..++|++|++-.. ..+...-...++|+.|+||+|.. -.....++.. + ....|++|.|.||.+....
T Consensus 219 ~i~sl~lsnNrL~~L--d~~sslsq~apklk~L~LS~N~~-~~~~~~el~K-~-k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 219 EILSLSLSNNRLYHL--DALSSLSQIAPKLKTLDLSHNHS-KISSESELDK-L-KGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred ceeeeecccchhhch--hhhhHHHHhcchhheeecccchh-hhcchhhhhh-h-cCCCHHHeeecCCccccch
Confidence 789999999987532 23333335578999999999931 1111111111 1 3346888999999886643
No 476
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=70.86 E-value=32 Score=34.34 Aligned_cols=88 Identities=13% Similarity=0.044 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000742 164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIE 243 (1313)
Q Consensus 164 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~ 243 (1313)
.....+..+..+-...++.+++...+.-.--+ .|....+-..-|.++...|+|.+|+..++...+-.+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL---------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~--- 75 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVL---------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAP--- 75 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHh---------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCC---
Confidence 45566777777777888888888877766555 344566777888999999999999999988655433
Q ss_pred hhhhHHHHHHHHHHHHHHhcCHH
Q 000742 244 HCQGEAKGYINLGELHYRVQKYD 266 (1313)
Q Consensus 244 ~~~~~~~~~~~la~~~~~~g~~~ 266 (1313)
..+.+--.++.+++.+++..
T Consensus 76 ---~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 76 ---GFPYAKALLALCLYALGDPS 95 (160)
T ss_pred ---CChHHHHHHHHHHHHcCChH
Confidence 55666667777888877765
No 477
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=70.58 E-value=2.1e+02 Score=33.13 Aligned_cols=158 Identities=15% Similarity=0.125 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHHHHHhccC-CcchhhHHHHHHHHHHHHHHHHHhccCCC-----CCcchhhHHHHHHHHHHHHHHHH
Q 000742 105 LVEQQRACTQLGRTYYEMFLRS-DDDHYSIRNAKKYFKSAMKLAQTLKENPA-----TSRSSFLKEYIDAHNNIGMLQME 178 (1313)
Q Consensus 105 ~~~~a~a~~~lg~~y~~l~~~~-~~~~~~~~~A~~~~~~Al~l~~~~~~~~~-----~~~~~~~p~~~~~~~~la~~y~~ 178 (1313)
..+.+.+++++|.+|..++... ......+.+|..+|++|-.++.-+.+... .......+....++..+..+..+
T Consensus 115 ~fEka~vlfNiaal~s~la~~~~~~~~eglK~A~~~fq~AAG~F~~l~e~~~~~~~~~~s~Dl~~~~l~~l~~lmLAQAQ 194 (346)
T cd09240 115 GYEKVCVLFNIAALQSQIAAEQNLDTDEGLKLAAKLFQQAAGIFNHLKETVLSALQQEPTPDLSPDTLSALSALMLAQAQ 194 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3455677888998888774331 12234578999999999877766544310 01123455556666555543322
Q ss_pred cCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------HHHHHhchhhhHH
Q 000742 179 LDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDI---------IICKKIEHCQGEA 249 (1313)
Q Consensus 179 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal---------~~~~~~~~~~~~~ 249 (1313)
. -.+++|+.- . ..+...+......+..| ++|...+.... ...-+.......+
T Consensus 195 E-------~~~~Kai~~--~----~k~~liAKLa~qv~~~Y------~~a~~~l~~~~~~~~~~~~W~~~~~~K~~~f~a 255 (346)
T cd09240 195 E-------VFYLKATRD--K----MKDAIIAKLAAQAADYY------GDAFKQCQREDVRSLLPKDWIPVLAGKQAYFHA 255 (346)
T ss_pred H-------HHHHHHHhc--c----CchhHHHHHHHHHHHHH------HHHHHHHhcchhccccCHHHHHHHHHHHHHHHH
Confidence 2 234444431 1 11222222222222222 33333332211 0000001122345
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 000742 250 KGYINLGELHYRVQKYDEAILCYQKALNLAQS 281 (1313)
Q Consensus 250 ~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~ 281 (1313)
.+++..|..+...+++-+|+..++.|.+....
T Consensus 256 ~A~y~~a~~~~e~~k~GeaIa~L~~A~~~~~~ 287 (346)
T cd09240 256 LAEYHQSLVAKAQKKFGEEIARLQHALELIKT 287 (346)
T ss_pred HHHHHHHHHhhhhchHHHHHHHHHHHHHHHHH
Confidence 56677777777778888888888888775543
No 478
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=70.58 E-value=56 Score=28.26 Aligned_cols=30 Identities=27% Similarity=0.448 Sum_probs=22.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000742 423 KVNMGNVLDSNGDWAGALDAFQEGYRIAVE 452 (1313)
Q Consensus 423 ~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~ 452 (1313)
+...|.-+...|+|++|+.+|.+|++.+..
T Consensus 9 l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~ 38 (77)
T cd02683 9 VLKRAVELDQEGRFQEALVCYQEGIDLLMQ 38 (77)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 344455566889999999999999987755
No 479
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=70.27 E-value=3.3 Score=42.95 Aligned_cols=60 Identities=22% Similarity=0.309 Sum_probs=54.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcc
Q 000742 218 VYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSME 283 (1313)
Q Consensus 218 ~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~ 283 (1313)
.....++.+.|.+.|.+++++.+ ..+..|+.+|....+.|+++.|.+.|++.+++.|...
T Consensus 4 ~~~~~~D~~aaaely~qal~lap------~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAP------EWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCc------hhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 44567899999999999999987 7889999999999999999999999999999988643
No 480
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=69.83 E-value=1.6e+02 Score=33.94 Aligned_cols=101 Identities=10% Similarity=0.048 Sum_probs=73.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCCCCCc---chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhHhhhhccCCCchH
Q 000742 131 YSIRNAKKYFKSAMKLAQTLKENPATSR---SSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDG 207 (1313)
Q Consensus 131 ~~~~~A~~~~~~Al~l~~~~~~~~~~~~---~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 207 (1313)
++|..|..-|..|++++.+-.-.....+ .....-...+-..+..+|..+++.+-|+....+.+.+ .|.
T Consensus 190 k~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l---------nP~ 260 (569)
T PF15015_consen 190 KKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL---------NPS 260 (569)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc---------Ccc
Confidence 8899999999999999876422111000 0111122334567889999999999999999999887 444
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000742 208 RSRLHHNLGNVYMELRMWDKSREHIEQDIIICK 240 (1313)
Q Consensus 208 ~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~ 240 (1313)
...-+..-|.++..+.+|.+|-..+.-|.-++-
T Consensus 261 ~frnHLrqAavfR~LeRy~eAarSamia~ymyw 293 (569)
T PF15015_consen 261 YFRNHLRQAAVFRRLERYSEAARSAMIADYMYW 293 (569)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667778889999999999999888777665554
No 481
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=69.03 E-value=2e+02 Score=32.33 Aligned_cols=99 Identities=10% Similarity=0.001 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchh-HHHHHHHHHHH
Q 000742 351 SMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEG-QALAKVNMGNV 429 (1313)
Q Consensus 351 ~~~~~~~~A~~~~~~a~~i~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~-~~~~~~~lg~~ 429 (1313)
...++.++|+++.++..+-.+....+.....+...+|.++...|+.+++.+.+...-+......+.+. .-..|+.++.-
T Consensus 86 ~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssq 165 (380)
T KOG2908|consen 86 EQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQ 165 (380)
T ss_pred HHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHH
Confidence 34457888999999998888877776677788888999999999999999999988887776666544 44456666655
Q ss_pred HH-HcCCHHHHHHHHHHHHHH
Q 000742 430 LD-SNGDWAGALDAFQEGYRI 449 (1313)
Q Consensus 430 y~-~~g~~~~A~~~~~kAl~i 449 (1313)
|+ ..|++..+....-+.+.+
T Consensus 166 Yyk~~~d~a~yYr~~L~YL~~ 186 (380)
T KOG2908|consen 166 YYKKIGDFASYYRHALLYLGC 186 (380)
T ss_pred HHHHHHhHHHHHHHHHHHhcc
Confidence 54 567887655544444444
No 482
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=68.80 E-value=14 Score=28.01 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=23.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhH
Q 000742 170 NNIGMLQMELDNLEEAKKFLIRGLEI 195 (1313)
Q Consensus 170 ~~la~~y~~~g~~~~A~~~~~~al~~ 195 (1313)
+.+|.+|...|+++.|.+.+++.+.-
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 57899999999999999999999853
No 483
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=68.64 E-value=4.7 Score=41.95 Aligned_cols=56 Identities=16% Similarity=0.258 Sum_probs=48.2
Q ss_pred HHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000742 389 SYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIA 450 (1313)
Q Consensus 389 ~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~ 450 (1313)
...+.++.+.|.+.|.+++++.+ .....|+.+|....+.|+++.|.+.|++.+++.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap------~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAP------EWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCc------hhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 44567899999999999998865 556679999999999999999999999999875
No 484
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=68.53 E-value=1.8e+02 Score=31.59 Aligned_cols=55 Identities=7% Similarity=-0.001 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHH-hCC-chhHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHH
Q 000742 396 FNKAIKWYTKSWEMYKS-IGN-LEGQALAKVNMGNV-LDSNGDWAGALDAFQEGYRIA 450 (1313)
Q Consensus 396 ~~~A~~~~~kal~l~~~-~~~-~~~~~~~~~~lg~~-y~~~g~~~~A~~~~~kAl~i~ 450 (1313)
.++|...|++|+++... +.. +|.......+.+.. |.-+++.++|....++|+.-+
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A 201 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 201 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 56899999999999765 322 33333334444544 445799999998888777654
No 485
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=67.62 E-value=38 Score=29.17 Aligned_cols=30 Identities=13% Similarity=0.230 Sum_probs=23.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000742 423 KVNMGNVLDSNGDWAGALDAFQEGYRIAVE 452 (1313)
Q Consensus 423 ~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~ 452 (1313)
+...|.-+.+.|+|++|+.+|++|++.+..
T Consensus 9 ~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 9 FARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 444555566889999999999999988754
No 486
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=67.46 E-value=1.6e+02 Score=34.69 Aligned_cols=158 Identities=16% Similarity=0.201 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHHHHhccC-CcchhhHHHHHHHHHHHHHHHHHhccCCCCCc-chhhHHHHHHHHHHHHHHHHcCCHH
Q 000742 106 VEQQRACTQLGRTYYEMFLRS-DDDHYSIRNAKKYFKSAMKLAQTLKENPATSR-SSFLKEYIDAHNNIGMLQMELDNLE 183 (1313)
Q Consensus 106 ~~~a~a~~~lg~~y~~l~~~~-~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~-~~~~p~~~~~~~~la~~y~~~g~~~ 183 (1313)
.+.+.+++++|.+|..++... ........+|..+|++|-.++.-+.+...... ....+....++..+.....+.-
T Consensus 104 fE~a~vL~N~aa~~s~~a~~~~~~~~~~~k~A~~~fq~AAg~f~~l~~~~~~~~s~Dl~~~~l~~l~~l~lAqAQe~--- 180 (377)
T PF03097_consen 104 FEKACVLFNIAALYSQLAASQNRSTDEGLKEACNYFQRAAGIFQYLRENFKDSPSPDLSPEVLSALSNLMLAQAQEC--- 180 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHHHHHHHHHSSS-SSGGGSHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCHHHHHHHHHHHHHHHHHH---
Confidence 456678888888888875332 23557789999999999888766544321111 2456666777766655443322
Q ss_pred HHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------HHHHhchhhhHHHHHHH
Q 000742 184 EAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDII---------ICKKIEHCQGEAKGYIN 254 (1313)
Q Consensus 184 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kal~---------~~~~~~~~~~~~~~~~~ 254 (1313)
.+++++.- . ......+......+ ..|++|...+...-. ..-........+.+++.
T Consensus 181 ----~~~ka~~~--~----~~~~liAKLa~~~~------~~Y~~a~~~l~~~~~~~~~~~~w~~~~~~K~~~~~A~A~y~ 244 (377)
T PF03097_consen 181 ----FYEKAIAD--K----KKPSLIAKLAAQAS------ELYDEAHEALQSSPLSESIPKDWRSYVQVKSAYYRALAHYH 244 (377)
T ss_dssp ----HHHHHHHT--T----G-HHHHHHHHHHHH------HHHHHHHHHHTTCHHHHCSHCCHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHc--c----CchHHHHHHHHHHH------HHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 34444331 1 11111222111111 223333333332211 00001122345667788
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHc
Q 000742 255 LGELHYRVQKYDEAILCYQKALNLAQSM 282 (1313)
Q Consensus 255 la~~~~~~g~~~~A~~~~~kal~~~~~~ 282 (1313)
.|..+...+++-+|+.+++.|.......
T Consensus 245 ~A~~~~~~~~~G~aia~L~~A~~~l~~a 272 (377)
T PF03097_consen 245 QALAAEEAKKYGEAIARLRRAEEALKEA 272 (377)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 8888888899999999999988776543
No 487
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.90 E-value=83 Score=36.28 Aligned_cols=136 Identities=14% Similarity=0.033 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCC---HHH
Q 000742 108 QQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDN---LEE 184 (1313)
Q Consensus 108 ~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~---~~~ 184 (1313)
++..++..|++.... ..|++|+..+-.|-+.+-.....-- ....+++..-..+-++|+.+.+ .+.
T Consensus 162 mglg~hekaRa~m~r--------e~y~eAl~~LleADe~F~~Cd~klL----e~VDNyallnLDIVWCYfrLknitcL~D 229 (568)
T KOG2561|consen 162 MGLGLHEKARAAMER--------EMYSEALLVLLEADESFSLCDSKLL----ELVDNYALLNLDIVWCYFRLKNITCLPD 229 (568)
T ss_pred HHHhHHHHHHHHHHH--------HHHHHHHHHHHHhhHHHHhhhHHHH----HhhcchhhhhcchhheehhhcccccCCh
Confidence 445556667777766 8888888888877766544322100 0011345555666777877664 344
Q ss_pred HHHHHHHHHhHhhhhc----------cCCCchH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHH
Q 000742 185 AKKFLIRGLEICNEEE----------VSEDDDG---RSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKG 251 (1313)
Q Consensus 185 A~~~~~~al~~~~~~~----------~~~~~~~---~~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~ 251 (1313)
|..-+..+-+-+.... .++..|. ..+.+..-|.+.+.+|+-++|.++++.|.....+..-.......
T Consensus 230 Ae~RL~ra~kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~elki~d~~lsl 309 (568)
T KOG2561|consen 230 AEVRLVRARKGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLELKINDETLSL 309 (568)
T ss_pred HHHHHHHHHHhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHeeccchHHHH
Confidence 5444444433322210 1222332 34455666888899999999999999888877655433333333
Q ss_pred HHHH
Q 000742 252 YINL 255 (1313)
Q Consensus 252 ~~~l 255 (1313)
...+
T Consensus 310 lv~m 313 (568)
T KOG2561|consen 310 LVGM 313 (568)
T ss_pred HHHc
Confidence 3333
No 488
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=66.88 E-value=1.8e+02 Score=33.70 Aligned_cols=69 Identities=17% Similarity=0.092 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHH----hccCCcchhhHHHHHHHHHHHHHHHHHhccCCCC-------CcchhhHHHHHHHHHHHH
Q 000742 106 VEQQRACTQLGRTYYEM----FLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPAT-------SRSSFLKEYIDAHNNIGM 174 (1313)
Q Consensus 106 ~~~a~a~~~lg~~y~~l----~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~-------~~~~~~p~~~~~~~~la~ 174 (1313)
.+.+.+++++|..|... ............+|..+|++|--.+.-+.+.... ......+....++..+..
T Consensus 106 fEk~sVLfNigal~s~~As~~~~~~~~s~e~~K~A~~~fq~AAG~F~~l~e~~l~~l~~~~~p~~DL~~~~L~aL~~lmL 185 (353)
T cd09243 106 FELASMLFNVALWYTKHASKLAGKEDITEDEAKDVHKSLRTAAGIFQFVKENYIPKLIEPAEKGSDLDPRVLEAYINQCT 185 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCHHHHHHHHHHHH
Confidence 44556778888888532 1111111145778888899887766544432110 112344556666665553
No 489
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=66.40 E-value=1.2e+02 Score=38.39 Aligned_cols=32 Identities=13% Similarity=-0.055 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhH
Q 000742 164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEI 195 (1313)
Q Consensus 164 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 195 (1313)
..-.+....|.-....|++++|+..|.-|-+.
T Consensus 412 ~~~~i~~~~A~~~e~~g~~~dAi~Ly~La~~~ 443 (613)
T PF04097_consen 412 FLREIIEQAAREAEERGRFEDAILLYHLAEEY 443 (613)
T ss_dssp HHHHHHHHHHHHHHHCT-HHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHhhH
Confidence 34556666777777788888888887776544
No 490
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=66.06 E-value=7.7 Score=41.96 Aligned_cols=70 Identities=17% Similarity=0.209 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccC
Q 000742 209 SRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMED 284 (1313)
Q Consensus 209 ~~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~~~~~~ 284 (1313)
+..-.+.|.-....|+.++|...|+.|+++++ ....++..+|.+....++.-+|-.+|-+|+.+.|....
T Consensus 116 A~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP------~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nse 185 (472)
T KOG3824|consen 116 AILALKAAGRSRKDGKLEKAMTLFEHALALAP------TNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSE 185 (472)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcCC------CCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchH
Confidence 33444555556678999999999999999987 78899999999999999999999999999999886543
No 491
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=65.48 E-value=27 Score=34.77 Aligned_cols=73 Identities=14% Similarity=0.003 Sum_probs=58.2
Q ss_pred hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccCh
Q 000742 5 EMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHF 84 (1313)
Q Consensus 5 ~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~ 84 (1313)
.++.+++..++.-..-..|...+. -..-|.++...|+|.+|+..++.+.+-. +....+--.++.|++.+|+.
T Consensus 23 ~~~~~D~e~lL~ALrvLRP~~~e~--~~~~~~l~i~r~~w~dA~rlLr~l~~~~------~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 23 LGDPDDAEALLDALRVLRPEFPEL--DLFDGWLHIVRGDWDDALRLLRELEERA------PGFPYAKALLALCLYALGDP 94 (160)
T ss_pred cCChHHHHHHHHHHHHhCCCchHH--HHHHHHHHHHhCCHHHHHHHHHHHhccC------CCChHHHHHHHHHHHHcCCh
Confidence 457788888888888899998777 5578999999999999999999864432 33455666788888888886
Q ss_pred H
Q 000742 85 K 85 (1313)
Q Consensus 85 ~ 85 (1313)
.
T Consensus 95 ~ 95 (160)
T PF09613_consen 95 S 95 (160)
T ss_pred H
Confidence 5
No 492
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=65.06 E-value=1.7e+02 Score=33.96 Aligned_cols=70 Identities=13% Similarity=0.138 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHhcc-CCcchhhHHHHHHHHHHHHHHHHHhccCC-CCCcchhhHHHHHHHHHHHHH
Q 000742 106 VEQQRACTQLGRTYYEMFLR-SDDDHYSIRNAKKYFKSAMKLAQTLKENP-ATSRSSFLKEYIDAHNNIGML 175 (1313)
Q Consensus 106 ~~~a~a~~~lg~~y~~l~~~-~~~~~~~~~~A~~~~~~Al~l~~~~~~~~-~~~~~~~~p~~~~~~~~la~~ 175 (1313)
.+.+.+++++|.+|..++.. ..........|..+|++|-.+++-+.+.. +.......+....++..+...
T Consensus 104 fEka~VLfNiaal~s~~A~~~~~~~~~~~K~A~~~fq~AAG~f~~l~e~~~~~ps~Dl~~~~l~~L~~lmLA 175 (348)
T cd09242 104 FEKASVLFNIGALLSQLAAEKYREDEDDLKEAITNLQQAAGCFQYINENFLHAPSVDLQQENVKFLVKLMLA 175 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCHHHHHHHHHHHHH
Confidence 45667888888888877432 22234678899999999988776554321 111123445555665555543
No 493
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.74 E-value=1.4e+02 Score=34.47 Aligned_cols=46 Identities=11% Similarity=-0.050 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Q 000742 381 DSFLVIGESYQKLRKFNKAIKWYTKSWEMYKSIGNLEGQALAKVNM 426 (1313)
Q Consensus 381 ~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~l 426 (1313)
..+..-|.+.+.+|+-++|.++++.|.....+..-..........+
T Consensus 268 RL~LLQGV~~yHqg~~deAye~le~a~~~l~elki~d~~lsllv~m 313 (568)
T KOG2561|consen 268 RLELLQGVVAYHQGQRDEAYEALESAHAKLLELKINDETLSLLVGM 313 (568)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHeeccchHHHHHHHc
Confidence 4556679999999999999999999988776554433333333333
No 494
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.94 E-value=3.3e+02 Score=32.99 Aligned_cols=97 Identities=14% Similarity=0.074 Sum_probs=68.3
Q ss_pred chhhHHHHHHHHHHHHHhcCc----------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCC--------
Q 000742 4 DEMQMSEAKRAYRSAKEEGNR----------QEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEK-------- 65 (1313)
Q Consensus 4 ~~~~~~~A~~~l~~a~~~~~~----------~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~-------- 65 (1313)
....|++|.+.|..|.+..+. +.-+..+..++.++..+|+.+-|.....+++-.......+.
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 346788999999999875432 23345588999999999999999988888886654432111
Q ss_pred ----------CchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHH
Q 000742 66 ----------HLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKD 101 (1313)
Q Consensus 66 ----------~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~ 101 (1313)
....+++..-....+.|-+.-|.++. +-.+.+.+.
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~c-KlllsLdp~ 374 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWC-KLLLSLDPS 374 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHH-HHHhhcCCc
Confidence 01223333444556679999999999 888888776
No 495
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=63.42 E-value=30 Score=40.36 Aligned_cols=73 Identities=12% Similarity=0.044 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH-h--CCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q 000742 381 DSFLVIGESYQKLRKFNKAIKWYTKSWEMYKS-I--GNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEAN 454 (1313)
Q Consensus 381 ~~~~~lg~~y~~~g~~~~A~~~~~kal~l~~~-~--~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~ 454 (1313)
-+...+.+++.-+|+|..|++.++.. ++.+. + .-..-...+++.+|-+|..+++|.+|++.|...+-...+..
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k 198 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTK 198 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556788999999999999876542 22111 0 11234456799999999999999999999999887665543
No 496
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=62.78 E-value=3.6e+02 Score=32.94 Aligned_cols=51 Identities=10% Similarity=-0.021 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 000742 7 QMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSV 59 (1313)
Q Consensus 7 ~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~ 59 (1313)
..+.+...|...+...|.-.-. |...|..-++.|..+.+.+.|++++.-.+
T Consensus 60 ~~~~~r~~y~~fL~kyPl~~gy--W~kfA~~E~klg~~~~s~~Vfergv~aip 110 (577)
T KOG1258|consen 60 DVDALREVYDIFLSKYPLCYGY--WKKFADYEYKLGNAENSVKVFERGVQAIP 110 (577)
T ss_pred HHHHHHHHHHHHHhhCccHHHH--HHHHHHHHHHhhhHHHHHHHHHHHHHhhh
Confidence 3456666666666666654433 56677777777777778888877776554
No 497
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=61.91 E-value=2.6e+02 Score=31.08 Aligned_cols=138 Identities=14% Similarity=0.070 Sum_probs=75.9
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 000742 34 IGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLVEQQRACT 113 (1313)
Q Consensus 34 lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~~~a~a~~ 113 (1313)
+-.......+..+-++....|+++.++. +.+|..++.-- ..-..+|...+ ++|++.....-..
T Consensus 190 IMQ~AWRERnp~~RI~~A~~ALeIN~eC------A~AyvLLAEEE--a~Ti~~AE~l~-k~ALka~e~~yr~-------- 252 (556)
T KOG3807|consen 190 IMQKAWRERNPPARIKAAYQALEINNEC------ATAYVLLAEEE--ATTIVDAERLF-KQALKAGETIYRQ-------- 252 (556)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHhcCchh------hhHHHhhhhhh--hhhHHHHHHHH-HHHHHHHHHHHhh--------
Confidence 3344445566777777788888887443 66777776543 23456788888 8888765432111
Q ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000742 114 QLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDNLEEAKKFLIRGL 193 (1313)
Q Consensus 114 ~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~~~~A~~~~~~al 193 (1313)
....... +...+|.. -.+.. -...+...+|.+..++|+..+|++.+....
T Consensus 253 --sqq~qh~--------~~~~da~~-----------rRDtn---------vl~YIKRRLAMCARklGrlrEA~K~~RDL~ 302 (556)
T KOG3807|consen 253 --SQQCQHQ--------SPQHEAQL-----------RRDTN---------VLVYIKRRLAMCARKLGRLREAVKIMRDLM 302 (556)
T ss_pred --HHHHhhh--------ccchhhhh-----------hcccc---------hhhHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 1100000 11111100 00110 234566778999999999999999988776
Q ss_pred hHhhhhccCCCchHHHHHHHHHHHHHHHcCCH
Q 000742 194 EICNEEEVSEDDDGRSRLHHNLGNVYMELRMW 225 (1313)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~lg~~y~~~g~~ 225 (1313)
+-.+- .....++.|+-.+...+.-|
T Consensus 303 ke~pl-------~t~lniheNLiEalLE~QAY 327 (556)
T KOG3807|consen 303 KEFPL-------LTMLNIHENLLEALLELQAY 327 (556)
T ss_pred hhccH-------HHHHHHHHHHHHHHHHHHHH
Confidence 54321 22334455555555544433
No 498
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=61.26 E-value=21 Score=38.02 Aligned_cols=72 Identities=14% Similarity=0.092 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHhh
Q 000742 395 KFNKAIKWYTKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENM 466 (1313)
Q Consensus 395 ~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~i~~~~~~~~~~~~al~~L 466 (1313)
....|.+++.+|+-.+..-++....+.+-+..+..|+...+|+-|..||.+|..+..+-.-+..+.+.-..|
T Consensus 54 ~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d~L~~We~rLet~L 125 (368)
T COG5091 54 TMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDDTLPLWEDRLETKL 125 (368)
T ss_pred ChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence 457788999999988888888777777888889999999999999999999999987766666655433333
No 499
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=61.14 E-value=25 Score=41.28 Aligned_cols=89 Identities=12% Similarity=0.021 Sum_probs=57.3
Q ss_pred HHcCCHHHHHHHHHHHHhHhhhhccCCCchHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHhchhhhHHHHHH
Q 000742 177 MELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMEL---RMWDKSREHIEQDIIICKKIEHCQGEAKGYI 253 (1313)
Q Consensus 177 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~y~~~---g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~ 253 (1313)
+..+....|+..|.+++...+ .....|.+.+.++.+. |+.-.|+.....|+.+.+ ....+++
T Consensus 385 ly~~~~~~~i~~~s~a~q~~~---------~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~------s~~kah~ 449 (758)
T KOG1310|consen 385 LYESIVSGAISHYSRAIQYVP---------DAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNP------SIQKAHF 449 (758)
T ss_pred hhhHHHHHHHHHHHHHhhhcc---------chhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCCh------HHHHHHH
Confidence 334556667777777766633 3456667777777664 344455555556666544 6667778
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 000742 254 NLGELHYRVQKYDEAILCYQKALNLAQ 280 (1313)
Q Consensus 254 ~la~~~~~~g~~~~A~~~~~kal~~~~ 280 (1313)
.|+.++..++++.+|+.+...+....|
T Consensus 450 ~la~aL~el~r~~eal~~~~alq~~~P 476 (758)
T KOG1310|consen 450 RLARALNELTRYLEALSCHWALQMSFP 476 (758)
T ss_pred HHHHHHHHHhhHHHhhhhHHHHhhcCc
Confidence 888888888888888877665554444
No 500
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=59.62 E-value=77 Score=35.03 Aligned_cols=62 Identities=19% Similarity=0.187 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 000742 210 RLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYRVQKYDEAILCYQKALN 277 (1313)
Q Consensus 210 ~~~~~lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~ 277 (1313)
.++..++..+...|+++.+++.+++.+...+ ..-..|..+-..|...|+...|+..|++.-+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp------~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDP------YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCc------cchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3444444444444555555555555444443 3344444444445555555555555544444
Done!