Query 000742
Match_columns 1313
No_of_seqs 1148 out of 7662
Neff 9.5
Searched_HMMs 29240
Date Tue Mar 26 17:57:51 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000742.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_511-515//hhsearch_pdb/000742hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z7x_W Ribonuclease inhibitor; 1.0 1 1 320.6 37.3 406 815-1279 16-425 (461)
2 1z7x_W Ribonuclease inhibitor; 1.0 1 1 305.5 30.8 328 833-1163 88-418 (461)
3 3rgz_A Protein brassinosteroid 1.0 1 1 289.7 -14.1 111 1196-1310 627-749 (768)
4 3rgz_A Protein brassinosteroid 1.0 1 1 276.0 -9.4 329 889-1270 318-722 (768)
5 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 270.6 27.3 375 4-472 11-385 (388)
6 2z81_A CD282 antigen, TOLL-lik 1.0 1 1 255.6 1.9 215 1028-1278 309-524 (549)
7 3j0a_A TOLL-like receptor 5; m 1.0 1 1 253.6 -10.8 289 917-1267 266-562 (844)
8 3sf4_A G-protein-signaling mod 1.0 1 1 253.4 42.0 354 27-494 8-381 (406)
9 3t6q_A CD180 antigen; protein- 1.0 1 1 253.3 -4.6 313 918-1278 255-574 (606)
10 3fp2_A TPR repeat-containing p 1.0 1 1 252.8 31.7 387 4-453 37-495 (537)
No 1
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=1.00 E-value=1 Score=320.64 Aligned_cols=406 Identities=23% Similarity=0.270 Sum_probs=324.0
Q ss_pred CCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 88806999999850367776982489989478898999751499958898027999978999999999711467644199
Q 000742 815 SEAPNMKLLKKLYISEVEDEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTL 894 (1313)
Q Consensus 815 ~~~~~~~~l~~l~~~~~~~~L~ls~~~l~~~~~~~l~~~L~~~~~L~~L~Ls~n~l~~~~~~~L~~~~~~~~~~~~l~~L 894 (1313)
+..++..++..+.++ +.|++++|.+++.++..+..++..+++|++|+|++|.+++.++..+...+.. ...++++|
T Consensus 16 ~~~~~~~~~~~~~~L---~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~--~~~~L~~L 90 (461)
T 1z7x_W 16 SDARWAELLPLLQQC---QVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT--PSCKIQKL 90 (461)
T ss_dssp CHHHHHHHHHHHTTC---SEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS--TTCCCCEE
T ss_pred CCHHHHHHHHHCCCC---CEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEE
T ss_conf 863499998635776---4998157888777899999999748985778687886774899999998740--78763179
Q ss_pred ECCCCCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHC-CCCCCEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 8027999978899997103279985889803999993699999998731-999768994259999888999999981499
Q 000742 895 DLHCNRFGPTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKN-CKVLYSLNIENCSITSRTIQKVADALGAES 973 (1313)
Q Consensus 895 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~-~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~ 973 (1313)
+|++|++++.+...+...+..+++|++|+|++|.+++.+...+...+.. .++|+.|++++|.+++.++..++..+..++
T Consensus 91 ~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 170 (461)
T 1z7x_W 91 SLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKP 170 (461)
T ss_dssp ECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCT
T ss_pred ECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCC
T ss_conf 80289787799999999972489645998979857637899999998407882159987799887899999999995499
Q ss_pred CCCEEEECCCCCCCHHHHHHHHHHHC-CCCCCCEEECCCCCCCHHHHHHHHH-HHHCCCCCEEECCCCCCCCCHHHHHHH
Q ss_conf 96688807888989025999998610-4886664654798899579999999-851598658874577799711999999
Q 000742 974 TLAQLCIGYNSPVTGNAITNLLVKLD-TLKSFSELNLNGLKLSKPVVDRLCQ-LAKTSCLTHLMLGCTNLGSDGSLQLVE 1051 (1313)
Q Consensus 974 ~L~~L~Ls~n~~~~~~~~~~l~~~l~-~~~~L~~L~L~~~~l~~~~~~~l~~-~~~~~~L~~L~Ls~n~i~~~~~~~l~~ 1051 (1313)
+|++|++++|. +++.+...+...+. ..++|+.|++++|.+++.+...+.. +...++|++|++++|.+++.++..++.
T Consensus 171 ~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 249 (461)
T 1z7x_W 171 DFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCP 249 (461)
T ss_dssp TCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred CCCEEECCCCC-CCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHH
T ss_conf 98889776887-66079999999985179981498723999968999999999970899667964588687189999999
Q ss_pred HHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHH
Q ss_conf 98418994109982579899368999999973079833897669999938899999984199996249981037799888
Q 000742 1052 SLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAG 1131 (1313)
Q Consensus 1052 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g 1131 (1313)
.+....+.|++|++++|.+++.++..++..+..+++|++|++++|.+++.++..++..+..+.+.|+.|++++|.+++.+
T Consensus 250 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 329 (461)
T 1z7x_W 250 GLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC 329 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred HHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHH
T ss_conf 97167877128987379788899999999983189845587889877668999999986069962016686789996677
Q ss_pred HHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCC
Q ss_conf 9999998622998469973489998033542100123357765433454445453311110111247-778421014678
Q 000742 1132 VLQLIKALSENDTLEELNLADNASKELTLQQNLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNT-DCNDLEVADSED 1210 (1313)
Q Consensus 1132 ~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~L~~ 1210 (1313)
+..++..+..+++|++|+|++|.+++.++..+. ..+. .+++|+.|++++
T Consensus 330 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~------------------------------~~l~~~~~~L~~L~L~~ 379 (461)
T 1z7x_W 330 CSHFSSVLAQNRFLLELQISNNRLEDAGVRELC------------------------------QGLGQPGSVLRVLWLAD 379 (461)
T ss_dssp HHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHH------------------------------HHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHH------------------------------HHHCCCCCCEEEEECCC
T ss_conf 999999985279866798158856633699999------------------------------99737998617987877
Q ss_pred CCCHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEECCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 510121001368987654355588630004899999976145676301888888889999999997228
Q 000742 1211 DKIRVESAASGFDNSCTSSCQKNSSFECQFVQELSSAIGMAKPLQLLDLSNNGFSTQAVKTLYCAWSSR 1279 (1313)
Q Consensus 1211 n~i~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~l~~~l~~~~~L~~L~Ls~N~~~~~~~~~l~~~l~~~ 1279 (1313)
|.+++. ....++..+..+++|+.|++++|.|++.++..+..++...
T Consensus 380 n~i~~~-----------------------~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~ 425 (461)
T 1z7x_W 380 CDVSDS-----------------------SCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 425 (461)
T ss_dssp SCCCHH-----------------------HHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTST
T ss_pred CCCCHH-----------------------HHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHCCC
T ss_conf 898736-----------------------6999999998499945898989978879999999986568
No 2
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=1.00 E-value=1 Score=305.48 Aligned_cols=328 Identities=23% Similarity=0.324 Sum_probs=161.0
Q ss_pred CEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHC
Q ss_conf 76982489989478898999751499958898027999978999999999711467644199802799997889999710
Q 000742 833 DEVIVSECELQDISVTPLLNALHTHKTVALLDLSHNLLGNGTMEKLQQFFISSCQNYVDLTLDLHCNRFGPTTLFQICEC 912 (1313)
Q Consensus 833 ~~L~ls~~~l~~~~~~~l~~~L~~~~~L~~L~Ls~n~l~~~~~~~L~~~~~~~~~~~~l~~L~Ls~n~l~~~~~~~l~~~ 912 (1313)
+.|++++|.+++.++..+..++...++|++|+|++|.+++.++..+...+.. ...+++.|+|++|+++..+...+...
T Consensus 88 ~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~--~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 88 QKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLD--PQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTS--TTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHC--CCCCCEEEECCCCCCCHHHHHHHHHH
T ss_conf 1798028978779999999997248964599897985763789999999840--78821599877998878999999999
Q ss_pred CCCCCCCCEEEECCCCCCHHHHHHHHHHHH-CCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHH
Q ss_conf 327998588980399999369999999873-1999768994259999888999999981499966888078889890259
Q 000742 913 PVLFTRLGVLNLSGNRLTDACGSYLSTILK-NCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAI 991 (1313)
Q Consensus 913 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~-~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~~~~~~~~ 991 (1313)
+..+++|++|+|++|.+++.+...+...+. ..+.|+.|++++|.++..++..++..+..+++|++|++++|. +++.+.
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~ 244 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGM 244 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHH
T ss_pred HHHCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCC-CCHHHH
T ss_conf 9549998889776887660799999999851799814987239999689999999999708996679645886-871899
Q ss_pred HHHHHHHC-CCCCCCEEECCCCCCCHHHHHHHHH-HHHCCCCCEEECCCCCCCCCHHHHHHHHHHCCCCCCCEEECCCCC
Q ss_conf 99998610-4886664654798899579999999-851598658874577799711999999984189941099825798
Q 000742 992 TNLLVKLD-TLKSFSELNLNGLKLSKPVVDRLCQ-LAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCG 1069 (1313)
Q Consensus 992 ~~l~~~l~-~~~~L~~L~L~~~~l~~~~~~~l~~-~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 1069 (1313)
..+...+. .+++|+.|++++|.+++.++..+.. +..+++|++|++++|.+++.++..+...+....+.|+.|++++|.
T Consensus 245 ~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 245 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCC
T ss_conf 99999971678771289873797888999999999831898455878898776689999999860699620166867899
Q ss_pred CCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 99368999999973079833897669999938899999984199996249981037799888999999862299846997
Q 000742 1070 LESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELN 1149 (1313)
Q Consensus 1070 l~~~~~~~l~~~l~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~ 1149 (1313)
+++.++..++..+..+++|++|+|++|.+++.++..++..+..+..+|+.|++++|.+++.|+..++..+..+++|++|+
T Consensus 325 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~ 404 (461)
T 1z7x_W 325 FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELD 404 (461)
T ss_dssp CBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEE
T ss_pred CCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf 96677999999985279866798158856633699999997379986179878778987366999999998499945898
Q ss_pred CCCCCCCHHHHHHH
Q ss_conf 34899980335421
Q 000742 1150 LADNASKELTLQQN 1163 (1313)
Q Consensus 1150 Ls~N~i~~~~~~~~ 1163 (1313)
|++|.+++.++..+
T Consensus 405 l~~N~i~~~~~~~l 418 (461)
T 1z7x_W 405 LSNNCLGDAGILQL 418 (461)
T ss_dssp CCSSSCCHHHHHHH
T ss_pred CCCCCCCHHHHHHH
T ss_conf 98997887999999
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=289.74 Aligned_cols=111 Identities=13% Similarity=0.085 Sum_probs=83.8
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 24777842101467851012100136898765435558863000489999997614567630188888888999999999
Q 000742 1196 MNTDCNDLEVADSEDDKIRVESAASGFDNSCTSSCQKNSSFECQFVQELSSAIGMAKPLQLLDLSNNGFSTQAVKTLYCA 1275 (1313)
Q Consensus 1196 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~l~~~l~~~~~L~~L~Ls~N~~~~~~~~~l~~~ 1275 (1313)
.+.++++|+.||+++|.+++.+|.. ...+ ..|+.|+|++|++++.+|..++.+++|+.|||++|.+++..+..+. .
T Consensus 627 ~~~~l~~L~~LdLs~N~l~g~ip~~--l~~l-~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~-~ 702 (768)
T 3rgz_A 627 TFDNNGSMMFLDMSYNMLSGYIPKE--IGSM-PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS-A 702 (768)
T ss_dssp SCSSSBCCCEEECCSSCCBSCCCGG--GGGC-TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGG-G
T ss_pred HHHCCCCCCEEECCCCCCCCCCCHH--HHCC-CCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHH-C
T ss_conf 3403356657978588015558778--8414-1578784868803887896784777899898978802386886775-7
Q ss_pred HHCCCCCCCCCCCCCCCEE---------EEEECCCCC-CC--CCCCC
Q ss_conf 7228989962000013267---------764237421-25--67431
Q 000742 1276 WSSRSGAGPAWKHIKEQII---------HFSVEGNKC-CR--VKPCC 1310 (1313)
Q Consensus 1276 l~~~~~~~~~~~~i~~~~~---------~~~~~~~~~-~~--~~~~~ 1310 (1313)
+..=...+++.|++.+.+. ..++.||.. |+ +.+|.
T Consensus 703 l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~ 749 (768)
T 3rgz_A 703 LTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCD 749 (768)
T ss_dssp CCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCC
T ss_pred CCCCCEEECCCCCCCCCCCCCHHHCCCCHHHHCCCCHHCCCCCCCCC
T ss_conf 88789787968815560899601024897775698321088776788
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=275.96 Aligned_cols=329 Identities=19% Similarity=0.151 Sum_probs=184.0
Q ss_pred CCCEEEECCCCCCC-HHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC-CCCEEEEECCCCCHHHHHHHH
Q ss_conf 64419980279999-7889999710327998588980399999369999999873199-976899425999988899999
Q 000742 889 YVDLTLDLHCNRFG-PTTLFQICECPVLFTRLGVLNLSGNRLTDACGSYLSTILKNCK-VLYSLNIENCSITSRTIQKVA 966 (1313)
Q Consensus 889 ~~l~~L~Ls~n~l~-~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~~~l~~~~~~~l~ 966 (1313)
..++.|+|++|.+. ..+...+.. +++|++|+|++|.+.+. ++..+..++ +|+.|++++|.+++.. +
T Consensus 318 ~~L~~L~L~~n~l~~~ip~~~l~~----l~~L~~L~Ls~n~l~~~----~p~~l~~l~~~L~~L~Ls~N~l~~~~----~ 385 (768)
T 3rgz_A 318 SLLESLALSSNNFSGELPMDTLLK----MRGLKVLDLSFNEFSGE----LPESLTNLSASLLTLDLSSNNFSGPI----L 385 (768)
T ss_dssp TTCCEEECCSSEEEEECCHHHHTT----CTTCCEEECCSSEEEEC----CCTTHHHHTTTCSEEECCSSEEEEEC----C
T ss_pred CCCCEEECCCCCCCCCCCHHHHHC----CCCCCEEECCCCCCCCC----CCHHHHHHHCCCCEEECCCCCCCCCC----C
T ss_conf 776677897885257379788724----88887884847843762----30989863227719986278747876----7
Q ss_pred HHHHC--CCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCC
Q ss_conf 99814--9996688807888989025999998610488666465479889957999999985159865887457779971
Q 000742 967 DALGA--ESTLAQLCIGYNSPVTGNAITNLLVKLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSD 1044 (1313)
Q Consensus 967 ~~l~~--~~~L~~L~Ls~n~~~~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~L~~L~Ls~n~i~~~ 1044 (1313)
..+.. .++|++|++++|. +++. ++..+..+++|+.|++++|.++...+..+ ...++|+.|++++|.+...
T Consensus 386 ~~~~~~~~~~L~~L~L~~n~-l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~L~~n~l~~~ 457 (768)
T 3rgz_A 386 PNLCQNPKNTLQELYLQNNG-FTGK----IPPTLSNCSELVSLHLSFNYLSGTIPSSL---GSLSKLRDLKLWLNMLEGE 457 (768)
T ss_dssp TTTTCSTTCCCCEEECCSSE-EEEE----CCGGGGGCTTCCEEECCSSEEESCCCGGG---GGCTTCCEEECCSSCCCSC
T ss_pred HHHHHCCCCCCCEEECCCCC-CCCC----CCHHHHCCCCCCEEECCCCCCCCCCCHHH---HCCCCCCEEECCCCCCCCC
T ss_conf 66653324776189897784-6542----48777568987989895884668546777---4499889898978815471
Q ss_pred HHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEC
Q ss_conf 19999999841899410998257989936899999997307983389766999993889999998419999624998103
Q 000742 1045 GSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSK 1124 (1313)
Q Consensus 1045 ~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~ 1124 (1313)
.. ..+ ...+.|+.|++++|.+++. ++..+..+++|+.|+|++|.+.+..+..+..+ ..|+.|+|++
T Consensus 458 ~p----~~~-~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l-----~~L~~L~L~~ 523 (768)
T 3rgz_A 458 IP----QEL-MYVKTLETLILDFNDLTGE----IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL-----ENLAILKLSN 523 (768)
T ss_dssp CC----GGG-GGCTTCCEEECCSSCCCSC----CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC-----TTCCEEECCS
T ss_pred CC----HHH-CCCCCCEEEEECCCCCCCC----CCHHHHCCCCCCEEECCCCCCCCCCCHHHHCC-----CCCCEEECCC
T ss_conf 89----788-2877732999019951375----88788169989989753995189687688568-----9999898978
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHH-----------------------------------------
Q ss_conf 779988899999986229984699734899980335421-----------------------------------------
Q 000742 1125 CQLGLAGVLQLIKALSENDTLEELNLADNASKELTLQQN----------------------------------------- 1163 (1313)
Q Consensus 1125 n~i~~~g~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~~----------------------------------------- 1163 (1313)
|.++.. ++..+..+++|+.|+|++|.+.+.....+
T Consensus 524 N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (768)
T 3rgz_A 524 NSFSGN----IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 599 (768)
T ss_dssp SCCEEE----CCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTC
T ss_pred CCCCCC----CCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 943374----8877708898998989888468827957860421223201345421111344432222332221001355
Q ss_pred -------------------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -------------------------------0012335776543345444545331111011124777842101467851
Q 000742 1164 -------------------------------LSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDK 1212 (1313)
Q Consensus 1164 -------------------------------~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~ 1212 (1313)
+..++.++++.|.++. .....+.+++.|+.|+|++|.
T Consensus 600 ~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g------------~ip~~l~~l~~L~~L~Ls~N~ 667 (768)
T 3rgz_A 600 RSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG------------YIPKEIGSMPYLFILNLGHND 667 (768)
T ss_dssp CGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBS------------CCCGGGGGCTTCCEEECCSSC
T ss_pred CCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCC------------CCCHHHHCCCCCCEEECCCCC
T ss_conf 63232002321100113310046274334033566579785880155------------587788414157878486880
Q ss_pred CHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEECCCCCCCCHHHHH
Q ss_conf 0121001368987654355588630004899999976145676301888888889999
Q 000742 1213 IRVESAASGFDNSCTSSCQKNSSFECQFVQELSSAIGMAKPLQLLDLSNNGFSTQAVK 1270 (1313)
Q Consensus 1213 i~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~l~~~l~~~~~L~~L~Ls~N~~~~~~~~ 1270 (1313)
+++.+|.. ... ..+|+.|+|++|++++.+|..++.++.|+.|++++|.+++..+.
T Consensus 668 l~g~ip~~--l~~-L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 668 ISGSIPDE--VGD-LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp CCSCCCGG--GGG-CTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred CCCCCCHH--HHC-CCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCC
T ss_conf 38878967--847-77899898978802386886775788789787968815560899
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=270.57 Aligned_cols=375 Identities=18% Similarity=0.192 Sum_probs=310.6
Q ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 24669999999999998069199999999999999870799999999999999998627988722688789999997029
Q 000742 4 DEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEH 83 (1313)
Q Consensus 4 ~~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 83 (1313)
..|++++|++.+.++.+..|....+ +..+|.++...|++++|..++++++...+ ..+.++..+|.+|...|+
T Consensus 11 ~~g~~~~A~~~~~~~~~~~p~~~~~--~~~l~~~~~~~~~~~~a~~~~~~a~~~~p------~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 11 QAGDFEAAERHCMQLWRQEPDNTGV--LLLLSSIHFQCRRLDRSAHFSTLAIKQNP------LLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHTC
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHCCC------CCHHHHHHHHHHHHHCCC
T ss_conf 7799999999999999849788999--99999999986899999999999976197------866999999999987799
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 49999999999999989705989999999999999999720597404539999999999999999831599887311049
Q 000742 84 FKDALIYQVKKHLELAKDASDLVEQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLK 163 (1313)
Q Consensus 84 ~~~A~~~~~~kal~l~~~~~~~~~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p 163 (1313)
+++|+.+| ++++++.|+.. .++..+|.++... |++++|+..|+++++. .|
T Consensus 83 ~~~A~~~~-~~al~~~p~~~------~~~~~l~~~~~~~--------g~~~~A~~~~~~al~~---------------~p 132 (388)
T 1w3b_A 83 LQEAIEHY-RHALRLKPDFI------DGYINLAAALVAA--------GDMEGAVQAYVSALQY---------------NP 132 (388)
T ss_dssp HHHHHHHH-HHHHHHCTTCH------HHHHHHHHHHHHH--------SCSSHHHHHHHHHHHH---------------CT
T ss_pred HHHHHHHH-HHHHHCCCCHH------HHHHHHHHHHHHC--------CCHHHHHHHHHHHHHH---------------CC
T ss_conf 99999999-99987496539------9999999999985--------8999999999999975---------------98
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999709999999999997857522014888158999999999999982789999999999999999810
Q 000742 164 EYIDAHNNIGMLQMELDNLEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIE 243 (1313)
Q Consensus 164 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~kal~~~~~~~ 243 (1313)
....++..+|.++...|++++|+..|+++++.. +....++.++|.+|...|++++|+.+|++++.+.+
T Consensus 133 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--- 200 (388)
T 1w3b_A 133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ---------PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP--- 200 (388)
T ss_dssp TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT---
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC---------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC---
T ss_conf 968999999999998468999999999998729---------89789999999999985999999999999985598---
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11427999999999999810989999999999999997069258899999949999999988999999999999999999
Q 000742 244 HCQGEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNM 323 (1313)
Q Consensus 244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l 323 (1313)
....++..+|.++...|++++|+..+++++.+.|.........+.++...|++.+|+..++++. .+.
T Consensus 201 ---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-------~~~--- 267 (388)
T 1w3b_A 201 ---NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI-------ELQ--- 267 (388)
T ss_dssp ---TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------HTC---
T ss_pred ---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-------HHC---
T ss_conf ---8679999999999985789999999999985296878999999999998688999999999998-------649---
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHH
Q ss_conf 98308906999999999999999999997998999999999999999980791245999999999999941999999999
Q 000742 324 IIAKGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWY 403 (1313)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~l~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~ 403 (1313)
... ...+..++..+...+++++|..++++++.+. |..+.++..+|.+|...|++++|+.+|
T Consensus 268 ---p~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~ 328 (388)
T 1w3b_A 268 ---PHF----------PDAYCNLANALKEKGSVAEAEDCYNTALRLC------PTHADSLNNLANIKREQGNIEEAVRLY 328 (388)
T ss_dssp ---SSC----------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred ---CCC----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf ---998----------8999999999998699799999999998649------444999999999999848999999999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999999179045899999999999974999999999999999999919926799998754899997
Q 000742 404 TKSWEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMI 472 (1313)
Q Consensus 404 ~kal~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~l~~~~~~~~~~~~al~~L~~~~~~ 472 (1313)
++++++. +....++..+|.+|...|++++|+.+|++++++.. ....++.+++.++..
T Consensus 329 ~~al~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p------~~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 329 RKALEVF------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP------TFADAYSNMGNTLKE 385 (388)
T ss_dssp HHHTTSC------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT------TCHHHHHHHHHHHHH
T ss_pred HHHHHCC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHH
T ss_conf 9998609------87399997799999986888999999999986199------978999859999987
No 6
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=1.00 E-value=1 Score=255.56 Aligned_cols=215 Identities=12% Similarity=0.034 Sum_probs=147.6
Q ss_pred CCCCCEEECCCCCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHH
Q ss_conf 59865887457779971199999998418994109982579899368999999973079833897669999938899999
Q 000742 1028 TSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHKFTASVSLVHGILELNLGGNPIMKEGANALA 1107 (1313)
Q Consensus 1028 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~LdLs~N~i~~~~~~~l~ 1107 (1313)
..+|+.|++++|.+.... ..+....+.|+.|++++|.+++..... ...+..+++|+.|+|++|.+++.... .
T Consensus 309 ~~~L~~L~l~~n~l~~ip-----~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~--~ 380 (549)
T 2z81_A 309 LEKVKRITVENSKVFLVP-----CSFSQHLKSLEFLDLSENLMVEEYLKN-SACKGAWPSLQTLVLSQNHLRSMQKT--G 380 (549)
T ss_dssp STTCCEEEEESSCCCCCC-----HHHHHHCTTCCEEECCSSCCCHHHHHH-HTCTTSSTTCCEEECTTSCCCCHHHH--H
T ss_pred CCCCEEEEECCCCCCCCC-----HHHHHCCCCCCEEECCCCCCCCCCCCC-HHHHHCCCCCCEEECCCCCCCCCCCC--H
T ss_conf 256439982168511178-----878721765618974398524300344-45564456671998569955624652--1
Q ss_pred HHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98419999624998103779988899999986229984699734899980335421001233577654334544454533
Q 000742 1108 SLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASKELTLQQNLSSVNSENLQPALKTSDCVSKEVD 1187 (1313)
Q Consensus 1108 ~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~N~i~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~ 1187 (1313)
..+.. ...|+.|++++|.++ .++..+..+++|+.|+|++|.++....... ..++.+++++|.++..+
T Consensus 381 ~~~~~-l~~L~~L~Ls~N~l~-----~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~-~~L~~L~Ls~N~l~~~~------ 447 (549)
T 2z81_A 381 EILLT-LKNLTSLDISRNTFH-----PMPDSCQWPEKMRFLNLSSTGIRVVKTCIP-QTLEVLDVSNNNLDSFS------ 447 (549)
T ss_dssp HHGGG-CTTCCEEECTTCCCC-----CCCSCCCCCTTCCEEECTTSCCSCCCTTSC-TTCSEEECCSSCCSCCC------
T ss_pred HHHHC-CCCCCEEECCCCCCC-----CCCHHHCCCCCCCEEECCCCCCCCCCCHHC-CCCEEEECCCCCHHHHC------
T ss_conf 34534-777778989999782-----377244555625289899997121550013-77509989889732310------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEECCCCCCCCHH
Q ss_conf 11110111247778421014678510121001368987654355588630004899999976145676301888888889
Q 000742 1188 TDQHGLFAMNTDCNDLEVADSEDDKIRVESAASGFDNSCTSSCQKNSSFECQFVQELSSAIGMAKPLQLLDLSNNGFSTQ 1267 (1313)
Q Consensus 1188 ~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~l~~~l~~~~~L~~L~Ls~N~~~~~ 1267 (1313)
..+++|+.|++++|.++.++. ....++|+.|+|++|++.+..+..+..+++|+.|++++|++...
T Consensus 448 ----------~~l~~L~~L~Ls~N~l~~ip~-----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 448 ----------LFLPRLQELYISRNKLKTLPD-----ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp ----------CCCTTCCEEECCSSCCSSCCC-----GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCC
T ss_pred ----------CCCCHHCEEECCCCCCCCCCC-----CCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCC
T ss_conf ----------458731289899994576787-----55576688876679836771999974071548897158972378
Q ss_pred HH-HHHHHHHHC
Q ss_conf 99-999999722
Q 000742 1268 AV-KTLYCAWSS 1278 (1313)
Q Consensus 1268 ~~-~~l~~~l~~ 1278 (1313)
.. ......|-.
T Consensus 513 ~~~~~~l~~~l~ 524 (549)
T 2z81_A 513 CPRIDYLSRWLN 524 (549)
T ss_dssp HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHH
T ss_conf 843799999997
No 7
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=253.62 Aligned_cols=289 Identities=17% Similarity=0.100 Sum_probs=181.1
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHH
Q ss_conf 98588980399999369999999873199976899425999988899999998149996688807888989025999998
Q 000742 917 TRLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLV 996 (1313)
Q Consensus 917 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~~~~~~~~~~l~~ 996 (1313)
++|+.|+|++|.+... .+..+..++.|+.|+|++|.++. ..+.+|..+++|++|+|++|. ++.. .+.
T Consensus 266 ~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~Ls~N~-l~~~----~~~ 332 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSL----NSRVFETLKDLKVLNLAYNKINK----IADEAFYGLDNLQVLNLSYNL-LGEL----YSS 332 (844)
T ss_dssp SCCCEEECTTCCCCEE----CSCCSSSCCCCCEEEEESCCCCE----ECTTTTTTCSSCCEEEEESCC-CSCC----CSC
T ss_pred CCCCEEECCCCCCCCC----CHHHHHCCCCCCEEECCCCCCCC----CCHHHHCCCCCCCEEECCCCC-CCCC----CHH
T ss_conf 7861898979945515----86345258999999897981898----796883688899989898997-8851----878
Q ss_pred HHCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHH
Q ss_conf 61048866646547988995799999998515986588745777997119999999841899410998257989936899
Q 000742 997 KLDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIH 1076 (1313)
Q Consensus 997 ~l~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 1076 (1313)
.+..+++|+.|++++|.++...... +...++|+.|+|++|.+.... ..+.|+.|++++|.++..
T Consensus 333 ~~~~l~~L~~L~L~~N~i~~~~~~~---~~~l~~L~~L~Ls~N~l~~i~----------~~~~L~~L~l~~N~l~~l--- 396 (844)
T 3j0a_A 333 NFYGLPKVAYIDLQKNHIAIIQDQT---FKFLEKLQTLDLRDNALTTIH----------FIPSIPDIFLSGNKLVTL--- 396 (844)
T ss_dssp SCSSCTTCCEEECCSCCCCCCCSSC---SCSCCCCCEEEEETCCSCCCS----------SCCSCSEEEEESCCCCCC---
T ss_pred HHCCCCCCCEEECCCCCCCCCCHHH---HCCCCCCCEEECCCCCCCCCC----------CCCCCCHHCCCCCCCCCC---
T ss_conf 8468999998989899877628666---137888999889899778616----------889823200589972314---
Q ss_pred HHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCC
Q ss_conf 99999730798338976699999388999999841999962499810377998889999998622998469973489998
Q 000742 1077 KFTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASK 1156 (1313)
Q Consensus 1077 ~l~~~l~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~N~i~ 1156 (1313)
+ ....+++.|++++|.+.+.........+ ..|+.|+|++|.++... ....+..+++|+.|+|++|.++
T Consensus 397 --~---~~~~~l~~L~ls~N~l~~l~~~~~~~~l----~~L~~L~Ls~N~l~~~~---~~~~~~~~~~L~~L~Ls~N~l~ 464 (844)
T 3j0a_A 397 --P---KINLTANLIHLSENRLENLDILYFLLRV----PHLQILILNQNRFSSCS---GDQTPSENPSLEQLFLGENMLQ 464 (844)
T ss_dssp --C---CCCTTCCEEECCSCCCCSSTTHHHHTTC----TTCCEEEEESCCCCCCC---SSSSSCSCTTCCBCEEESCCCS
T ss_pred --C---CCCCCCCEEECCCCCCCCCCHHHHHHCC----CCCCEEECCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCC
T ss_conf --5---5455431221456753457556665127----76666667787125555---4333566873100247777364
Q ss_pred HHH--------HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCC
Q ss_conf 033--------542100123357765433454445453311110111247778421014678510121001368987654
Q 000742 1157 ELT--------LQQNLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIRVESAASGFDNSCTS 1228 (1313)
Q Consensus 1157 ~~~--------~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~ 1228 (1313)
... +.. +..|+.+++++|.++.++. ..+.++++|+.|+|++|.++++++.. ...
T Consensus 465 ~~~~~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~------------~~~~~l~~L~~L~Ls~N~l~~l~~~~-----~~~ 526 (844)
T 3j0a_A 465 LAWETELCWDVFEG-LSHLQVLYLNHNYLNSLPP------------GVFSHLTALRGLSLNSNRLTVLSHND-----LPA 526 (844)
T ss_dssp SSCCSCCCSSCSSC-BCCEECCCCCHHHHTTCCT------------TSSSSCCSCSEEEEESCCCSSCCCCC-----CCS
T ss_pred CCCCCCCCHHHHCC-CCCCCEEECCCCCCCCCCH------------HHCCCHHHHHEEECCCCCCCCCCHHH-----HHC
T ss_conf 41013553555447-5536577788985655395------------57045012215699999787457101-----100
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCEECCCCCCCCHH
Q ss_conf 355588630004899999976145676301888888889
Q 000742 1229 SCQKNSSFECQFVQELSSAIGMAKPLQLLDLSNNGFSTQ 1267 (1313)
Q Consensus 1229 ~L~~L~L~~n~~~~~l~~~l~~~~~L~~L~Ls~N~~~~~ 1267 (1313)
+|+.|+|++|++.+..|.. ..+|+.|++++|++...
T Consensus 527 ~L~~L~Ls~N~l~~~~~~~---~~~L~~l~l~~Np~~C~ 562 (844)
T 3j0a_A 527 NLEILDISRNQLLAPNPDV---FVSLSVLDITHNKFICE 562 (844)
T ss_dssp CCCEEEEEEECCCCCCSCC---CSSCCEEEEEEECCCCS
T ss_pred CCCEEECCCCCCCCCCHHH---HCCCCEEEECCCCCCCC
T ss_conf 4558889888478889668---37768899319970253
No 8
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=1.00 E-value=1 Score=253.45 Aligned_cols=354 Identities=22% Similarity=0.296 Sum_probs=304.7
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 99999999999987079999999999999999862798872268878999999702949999999999999989705989
Q 000742 27 EARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEHFKDALIYQVKKHLELAKDASDLV 106 (1313)
Q Consensus 27 ~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~kal~l~~~~~~~~ 106 (1313)
.+..+..+|..+...|++++|+.+|+++++..+. +....+.++..+|.+|...|++++|+.++ ++++.+.+...+..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE--DLKTLSAIYSQLGNAYFYLHDYAKALEYH-HHDLTLARTIGDQL 84 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS--CHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHHHCCCCH
T ss_conf 9999998899998703689999999999863863--59999999999999999806899999999-99999998626667
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC-----
Q ss_conf 999999999999999720597404539999999999999999831599887311049999999999999997099-----
Q 000742 107 EQQRACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDN----- 181 (1313)
Q Consensus 107 ~~a~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~----- 181 (1313)
..+.++..+|.+|... |++++|+.++++++++.+...+. +..+.++..+|.+|...|+
T Consensus 85 ~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~~~ 147 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVL--------GNFDEAIVCCQRHLDISRELNDK---------VGEARALYNLGNVYHAKGKSFGCP 147 (406)
T ss_dssp HHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHHHHHTCH---------HHHHHHHHHHHHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHHHHCCCC---------CCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 8999999999999884--------79999999999999999865321---------006899999999999739744444
Q ss_pred ---------------HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHH
Q ss_conf ---------------99999999997857522014888158999999999999982789999999999999999810114
Q 000742 182 ---------------LEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQ 246 (1313)
Q Consensus 182 ---------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~ 246 (1313)
+++|+.++.+++.+.+.. ++.+..+.++.++|.+|...|++++|+.++++++.+.+..++..
T Consensus 148 ~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 224 (406)
T 3sf4_A 148 GPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL---GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA 224 (406)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 310000104667899999999999999999855---67477899999999999983689999999999999998627858
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 27999999999999810989999999999999997069258899999949999999988999999999999999999983
Q 000742 247 GEAKGYINLGELHYRVQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIA 326 (1313)
Q Consensus 247 ~~~~~~~~la~~~~~~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~ 326 (1313)
..+.++..+|.+|...|++++|+.++++++.+.+...+.
T Consensus 225 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------------------------------------- 263 (406)
T 3sf4_A 225 AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR----------------------------------------- 263 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-----------------------------------------
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCC-----------------------------------------
T ss_conf 999999999999988499699999999999998857676-----------------------------------------
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
Q ss_conf 08906999999999999999999997998999999999999999980791245999999999999941999999999999
Q 000742 327 KGTSQERKYLLQQNASLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKLRKFNKAIKWYTKS 406 (1313)
Q Consensus 327 ~~~~~~a~~~~~~~~~l~~L~~~~~~~~~~~~A~~~~~~a~~l~~~~~~~~~~a~~~~~lg~~y~~~g~~~~A~~~~~ka 406 (1313)
...+.++..+|.+|..+|++++|+.+|+++
T Consensus 264 --------------------------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 293 (406)
T 3sf4_A 264 --------------------------------------------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293 (406)
T ss_dssp --------------------------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --------------------------------------------------HHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf --------------------------------------------------489999999999999837699999999999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 99999917904589999999999997499999999999999999991992679999875489999720399999999999
Q 000742 407 WEMYKSIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEANLPSVQLSALENMHYSHMIRFDNIEEARRLQHE 486 (1313)
Q Consensus 407 l~l~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~l~~~~~~~~~~~~al~~L~~~~~~~~~~~~~a~~~~e~ 486 (1313)
+++.+..++......++..+|.+|...|++++|+.+|++++++.++.+.+.....++..++.++...+........+.+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~ 373 (406)
T 3sf4_A 294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSE 373 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC-------
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998557857899999999999998699999999999999999982287103689999999999866768777777888
Q ss_pred HHHHHHHH
Q ss_conf 99999620
Q 000742 487 IDKLKESK 494 (1313)
Q Consensus 487 ~~~l~~s~ 494 (1313)
...+..+.
T Consensus 374 ~~~~~~~l 381 (406)
T 3sf4_A 374 NTEIDSSL 381 (406)
T ss_dssp --------
T ss_pred HHHHHHHH
T ss_conf 99999999
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=253.33 Aligned_cols=313 Identities=16% Similarity=0.102 Sum_probs=209.3
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHH
Q ss_conf 85889803999993699999998731999768994259999888999999981499966888078889890259999986
Q 000742 918 RLGVLNLSGNRLTDACGSYLSTILKNCKVLYSLNIENCSITSRTIQKVADALGAESTLAQLCIGYNSPVTGNAITNLLVK 997 (1313)
Q Consensus 918 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~~~~~~~~~~l~~~ 997 (1313)
+|+.|++++|.+++. .+..+..++.|+.|++++|.++ .++..+..+++|++|++++|. +... .+..
T Consensus 255 ~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~-----~lp~~l~~l~~L~~L~l~~n~-l~~~----~~~~ 320 (606)
T 3t6q_A 255 SVESINLQKHYFFNI----SSNTFHCFSGLQELDLTATHLS-----ELPSGLVGLSTLKKLVLSANK-FENL----CQIS 320 (606)
T ss_dssp EEEEEECTTCCCSSC----CTTTTTTCTTCSEEECTTSCCS-----CCCSSCCSCTTCCEEECTTCC-CSBG----GGGC
T ss_pred CEEEEEEECCCCCCC----CHHHHCCCCCCCEEECCCCCCC-----CCCHHHCCCCCCCEEECCCCC-CCCC----CHHH
T ss_conf 505999445765855----7777445667888956288267-----778214165468889771687-6867----6023
Q ss_pred HCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHH
Q ss_conf 10488666465479889957999999985159865887457779971199999998418994109982579899368999
Q 000742 998 LDTLKSFSELNLNGLKLSKPVVDRLCQLAKTSCLTHLMLGCTNLGSDGSLQLVESLFSRAQESVKLDLSYCGLESTCIHK 1077 (1313)
Q Consensus 998 l~~~~~L~~L~L~~~~l~~~~~~~l~~~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 1077 (1313)
+..+++|+.|++++|.+....+.. .+...++|+.|++++|.+...... .......+.|+.|++++|.+++.
T Consensus 321 ~~~l~~L~~L~l~~n~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~~l~~L~~L~l~~n~l~~~---- 391 (606)
T 3t6q_A 321 ASNFPSLTHLSIKGNTKRLELGTG--CLENLENLRELDLSHDDIETSDCC---NLQLRNLSHLQSLNLSYNEPLSL---- 391 (606)
T ss_dssp GGGCTTCSEEECCSCSSCCBCCSS--TTTTCTTCCEEECCSSCCCEEEES---TTTTTTCTTCCEEECCSCSCEEE----
T ss_pred HHCCCCCCEEECCCCCCCCCCCHH--HHHCCCCCCEEECCCCCCCCCCCC---CHHCCCCCCCCEEECCCCCCCCC----
T ss_conf 301576898889899744434624--550667589887889966645675---22105678889898989967757----
Q ss_pred HHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCH
Q ss_conf 99997307983389766999993889999998419999624998103779988899999986229984699734899980
Q 000742 1078 FTASVSLVHGILELNLGGNPIMKEGANALASLLMNPQCCLKVLVLSKCQLGLAGVLQLIKALSENDTLEELNLADNASKE 1157 (1313)
Q Consensus 1078 l~~~l~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~Ls~N~i~~ 1157 (1313)
.+..+..+++|+.|++++|.+....+...... ...|+.|++++|.++.. .+..+..+++|++|+|++|.+++
T Consensus 392 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~----l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~ 463 (606)
T 3t6q_A 392 KTEAFKECPQLELLDLAFTRLKVKDAQSPFQN----LHLLKVLNLSHSLLDIS----SEQLFDGLPALQHLNLQGNHFPK 463 (606)
T ss_dssp CTTTTTTCTTCSEEECTTCCEECCTTCCTTTT----CTTCCEEECTTCCCBTT----CTTTTTTCTTCCEEECTTCBCGG
T ss_pred CHHHHCCCCCCCEEECCCCCCCCCCCCHHHHC----CCCCCEEECCCCCCCCC----CHHHHHCCCCCCEEECCCCCCCC
T ss_conf 88873477457768788886777565212417----65588898989855776----87787378878889898998885
Q ss_pred HH------HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCC
Q ss_conf 33------542100123357765433454445453311110111247778421014678510121001368987654355
Q 000742 1158 LT------LQQNLSSVNSENLQPALKTSDCVSKEVDTDQHGLFAMNTDCNDLEVADSEDDKIRVESAASGFDNSCTSSCQ 1231 (1313)
Q Consensus 1158 ~~------~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~L~ 1231 (1313)
.. +..+ .+|+.+++++|.++.++. ..+.++++|+.|++++|.+++..+.. ... ...|
T Consensus 464 ~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~------------~~~~~l~~L~~L~Ls~N~l~~~~~~~--l~~-l~~L- 526 (606)
T 3t6q_A 464 GNIQKTNSLQTL-GRLEILVLSFCDLSSIDQ------------HAFTSLKMMNHVDLSHNRLTSSSIEA--LSH-LKGI- 526 (606)
T ss_dssp GEECSSCGGGGC-TTCCEEECTTSCCCEECT------------TTTTTCTTCCEEECCSSCCCGGGGGG--GTT-CCSC-
T ss_pred CCCCCCHHHCCC-CCCCEEECCCCCCCCCCH------------HHHCCCCCCCEEECCCCCCCCCCHHH--HCC-CCCC-
T ss_conf 434543124048-876688799996670686------------46326567888989898068689668--475-6651-
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCCEECCCCCCCCHHH-HHHHHHHHHC
Q ss_conf 5886300048999999761456763018888888899-9999999722
Q 000742 1232 KNSSFECQFVQELSSAIGMAKPLQLLDLSNNGFSTQA-VKTLYCAWSS 1278 (1313)
Q Consensus 1232 ~L~L~~n~~~~~l~~~l~~~~~L~~L~Ls~N~~~~~~-~~~l~~~l~~ 1278 (1313)
.|+|++|++++..+..+..+++|+.|++++|++.... ..++..-+..
T Consensus 527 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w~~~ 574 (606)
T 3t6q_A 527 YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKE 574 (606)
T ss_dssp EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHHHHHHH
T ss_pred EEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf 898768941426876625677878896779986166775789999973
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=252.80 Aligned_cols=387 Identities=14% Similarity=0.086 Sum_probs=282.0
Q ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 24669999999999998069199999999999999870799999999999999998627988722688789999997029
Q 000742 4 DEMQMSEAKRAYRSAKEEGNRQEEARWANVIGDILKNRGEYVEALKWFRIDYDVSVKYLPEKHLLPTCQSLGEVYLRLEH 83 (1313)
Q Consensus 4 ~~~~~~~A~~~l~~a~~~~~~~~~a~~~~~lg~~y~~~g~~~eAl~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 83 (1313)
..+++++|+..|+++++.+|....+ +..+|.+|...|++++|+..|+++++..+. ...++..+|.+|..+|+
T Consensus 37 ~~g~~~~A~~~~~~al~~~p~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~ 108 (537)
T 3fp2_A 37 TAKNFNEAIKYYQYAIELDPNEPVF--YSNISACYISTGDLEKVIEFTTKALEIKPD------HSKALLRRASANESLGN 108 (537)
T ss_dssp HTTCCC-CHHHHHHHHHHCTTCHHH--HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTC
T ss_pred HHCCHHHHHHHHHHHHHHCCCCCHH--HHHHHHHHHHCCCHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHCCC
T ss_conf 8642999999999998638998489--999999999868999999999999860986------28999999999998389
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHH------------------------------------------------------
Q ss_conf 49999999999999989705989999------------------------------------------------------
Q 000742 84 FKDALIYQVKKHLELAKDASDLVEQQ------------------------------------------------------ 109 (1313)
Q Consensus 84 ~~~A~~~~~~kal~l~~~~~~~~~~a------------------------------------------------------ 109 (1313)
+++|+..| + ++...+...+.....
T Consensus 109 ~~~A~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (537)
T 3fp2_A 109 FTDAMFDL-S-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTS 186 (537)
T ss_dssp HHHHHHHH-H-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCC
T ss_pred HHHHHHHH-H-HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHC
T ss_conf 99999999-9-986487878588999998778988999999999747454543450675799999744749999987632
Q ss_pred --------HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf --------999999999999720597404539999999999999999831599887311049999999999999997099
Q 000742 110 --------RACTQLGRTYYEMFLRSDDDHYSIRNAKKYFKSAMKLAQTLKENPATSRSSFLKEYIDAHNNIGMLQMELDN 181 (1313)
Q Consensus 110 --------~a~~~lg~~y~~l~~~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~~~~~~~~~p~~~~~~~~la~~y~~~g~ 181 (1313)
.....++..+. ...+.+..+...+.+|+..+.+.....+.. .......+.++..+|..+...|+
T Consensus 187 ~~~~~~~~~~~~~l~~~~~-------~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~-~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 187 SNYDTAYALLSDALQRLYS-------ATDEGYLVANDLLTKSTDMYHSLLSANTVD-DPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp CSSCSSHHHHHHHHHHHHT-------CSHHHHHHHHHHHHHHHHHHHHHHC--CCC-HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 5646178999999987887-------640206888879999999999999878774-04459999999999999875455
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999997857522014888158999999999999982789999999999999999810114279999999999998
Q 000742 182 LEEAKKFLIRGLEICNEEEVSEDDDGRSRLHHNLGNVYMELRMWDKSREHIEQDIIICKKIEHCQGEAKGYINLGELHYR 261 (1313)
Q Consensus 182 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~la~~~~~ 261 (1313)
+++|+.++++++... +. ..++..+|.+|...|++++|+.++++++...+ ....++..+|.+|..
T Consensus 259 ~~~A~~~~~~~~~~~---------~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~ 322 (537)
T 3fp2_A 259 LLDAQVLLQESINLH---------PT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNP------EYPPTYYHRGQMYFI 322 (537)
T ss_dssp HHHHHHHHHHHHHHC---------CC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC---------CC-CHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC------CCHHHHHHHHHHHHH
T ss_conf 789999999998669---------87-46999999999980379999999999754599------987999999999986
Q ss_pred HCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 10989999999999999997069258899999949999999988999999999999999999983089069999999999
Q 000742 262 VQKYDEAILCYQKALNLAQSMEDEDALASQIDQNIETVKKAIEVMDELKKEEQNLKKLTRNMIIAKGTSQERKYLLQQNA 341 (1313)
Q Consensus 262 ~g~~~~A~~~~~kal~l~~~~~~~~~~~~~~~~~lg~~~~a~~~~~~a~~~~~~~~~l~~~l~~~~~~~~~a~~~~~~~~ 341 (1313)
.|++++|+.+++++++..|.....+...+.++...|++.+|+..++++....+ .. ..
T Consensus 323 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-------------~~----------~~ 379 (537)
T 3fp2_A 323 LQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-------------TL----------PE 379 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------TC----------TH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-------------CC----------HH
T ss_conf 68999999999999985999779999999999984779999999999987399-------------98----------59
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH----------HCHHHHHHHHHHHHHHHH
Q ss_conf 9999999999799899999999999999998079124599999999999994----------199999999999999999
Q 000742 342 SLDRLIEKSSMIFAWLKHCEYAKRKKRIASELCDKGKLSDSFLVIGESYQKL----------RKFNKAIKWYTKSWEMYK 411 (1313)
Q Consensus 342 ~l~~L~~~~~~~~~~~~A~~~~~~a~~l~~~~~~~~~~a~~~~~lg~~y~~~----------g~~~~A~~~~~kal~l~~ 411 (1313)
.+..++..+...+++++|..++++++.+.............+..+|.+|... |++++|+.+|++++++.+
T Consensus 380 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 459 (537)
T 3fp2_A 380 VPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP 459 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999988378899999999998709762446888999998899999976401002247579999999999997499
Q ss_pred HHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 917904589999999999997499999999999999999991
Q 000742 412 SIGNLEGQALAKVNMGNVLDSNGDWAGALDAFQEGYRIAVEA 453 (1313)
Q Consensus 412 ~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~kAl~l~~~~ 453 (1313)
....++..+|.+|...|++++|+.+|++++++....
T Consensus 460 ------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 495 (537)
T 3fp2_A 460 ------RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTM 495 (537)
T ss_dssp ------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--C
T ss_pred ------CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC
T ss_conf ------978999999999998514999999999999868993
Done!