Query 000743
Match_columns 1313
No_of_seqs 631 out of 4303
Neff 6.0
Searched_HMMs 46136
Date Mon Apr 1 22:59:22 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000743.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000743hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0272 U4/U6 small nuclear ri 100.0 1.2E-27 2.6E-32 270.0 19.6 278 213-581 171-458 (459)
2 KOG0263 Transcription initiati 99.9 4.4E-26 9.6E-31 273.6 23.2 210 316-584 441-650 (707)
3 KOG0271 Notchless-like WD40 re 99.9 1.5E-25 3.2E-30 250.0 24.5 326 182-583 82-439 (480)
4 KOG0271 Notchless-like WD40 re 99.9 5.2E-25 1.1E-29 245.7 23.0 338 114-581 99-479 (480)
5 KOG0272 U4/U6 small nuclear ri 99.9 7.3E-26 1.6E-30 255.7 15.7 211 317-583 208-418 (459)
6 KOG0286 G-protein beta subunit 99.9 3.4E-23 7.3E-28 225.6 28.0 205 318-581 137-343 (343)
7 KOG0279 G protein beta subunit 99.9 3.6E-23 7.7E-28 224.5 23.8 213 318-584 7-223 (315)
8 KOG0263 Transcription initiati 99.9 8.6E-24 1.9E-28 254.0 20.3 222 319-584 371-608 (707)
9 KOG0265 U5 snRNP-specific prot 99.9 2.3E-23 5E-28 227.7 20.1 243 317-635 38-280 (338)
10 KOG0279 G protein beta subunit 99.9 2.1E-22 4.6E-27 218.5 26.6 257 315-648 52-310 (315)
11 KOG0300 WD40 repeat-containing 99.9 3.2E-23 6.9E-28 226.4 16.8 253 318-647 140-433 (481)
12 KOG0285 Pleiotropic regulator 99.9 2.5E-23 5.4E-28 230.7 15.3 168 377-584 141-308 (460)
13 KOG0281 Beta-TrCP (transducin 99.9 1.7E-23 3.6E-28 230.9 11.1 203 317-588 228-433 (499)
14 KOG0276 Vesicle coat complex C 99.9 2E-22 4.3E-27 235.4 19.8 208 319-584 48-258 (794)
15 KOG0276 Vesicle coat complex C 99.9 3.9E-22 8.4E-27 233.0 22.2 248 229-539 13-272 (794)
16 KOG0319 WD40-repeat-containing 99.9 3.8E-21 8.3E-26 229.1 29.5 216 317-581 402-617 (775)
17 KOG0295 WD40 repeat-containing 99.9 6.9E-21 1.5E-25 212.5 25.5 212 317-581 184-404 (406)
18 KOG0291 WD40-repeat-containing 99.9 1.1E-19 2.5E-24 216.3 36.7 397 98-583 58-508 (893)
19 KOG0313 Microtubule binding pr 99.9 1.2E-20 2.6E-25 211.5 25.7 353 130-582 36-417 (423)
20 KOG0264 Nucleosome remodeling 99.9 2.7E-21 5.8E-26 221.3 19.4 246 321-611 119-377 (422)
21 KOG0266 WD40 repeat-containing 99.9 6.5E-21 1.4E-25 231.1 23.5 205 320-585 152-366 (456)
22 KOG0266 WD40 repeat-containing 99.9 1.5E-20 3.3E-25 227.9 26.0 211 319-584 196-410 (456)
23 KOG0284 Polyadenylation factor 99.9 4.1E-22 8.9E-27 224.6 11.2 208 320-586 132-340 (464)
24 KOG0286 G-protein beta subunit 99.9 3.5E-20 7.5E-25 202.3 25.0 230 284-584 72-304 (343)
25 KOG0285 Pleiotropic regulator 99.9 1E-20 2.2E-25 210.2 21.0 183 318-542 143-325 (460)
26 KOG0281 Beta-TrCP (transducin 99.9 5.5E-22 1.2E-26 219.0 10.2 190 325-583 196-388 (499)
27 KOG0315 G-protein beta subunit 99.9 9.6E-20 2.1E-24 195.2 24.7 183 317-542 74-306 (311)
28 KOG0292 Vesicle coat complex C 99.8 1.5E-20 3.2E-25 225.9 18.8 206 318-584 43-281 (1202)
29 KOG0284 Polyadenylation factor 99.8 1.2E-20 2.6E-25 212.9 16.9 204 320-584 173-381 (464)
30 PTZ00421 coronin; Provisional 99.8 2.4E-19 5.2E-24 218.4 28.0 221 320-584 69-291 (493)
31 KOG0318 WD40 repeat stress pro 99.8 1.6E-18 3.5E-23 200.5 33.0 206 319-583 140-392 (603)
32 KOG0273 Beta-transducin family 99.8 5.4E-20 1.2E-24 210.6 20.4 197 327-583 236-482 (524)
33 KOG0273 Beta-transducin family 99.8 9.5E-19 2.1E-23 200.5 30.4 188 319-544 311-501 (524)
34 KOG0291 WD40-repeat-containing 99.8 1.9E-17 4.1E-22 197.7 42.1 208 319-586 343-553 (893)
35 KOG0319 WD40-repeat-containing 99.8 3E-20 6.5E-25 221.5 17.9 216 320-589 359-583 (775)
36 KOG0313 Microtubule binding pr 99.8 7.9E-20 1.7E-24 205.0 19.6 214 317-583 135-376 (423)
37 KOG0277 Peroxisomal targeting 99.8 4.6E-20 9.9E-25 198.1 16.6 189 344-583 75-265 (311)
38 KOG0292 Vesicle coat complex C 99.8 4E-20 8.7E-25 222.2 16.9 159 322-524 5-165 (1202)
39 KOG0274 Cdc4 and related F-box 99.8 1E-19 2.2E-24 222.4 20.7 203 319-587 242-445 (537)
40 KOG0645 WD40 repeat protein [G 99.8 8E-19 1.7E-23 190.3 23.3 208 318-583 6-225 (312)
41 KOG0295 WD40 repeat-containing 99.8 2.5E-20 5.5E-25 208.1 12.1 221 317-583 99-322 (406)
42 PTZ00421 coronin; Provisional 99.8 1E-18 2.2E-23 213.0 26.6 171 381-585 69-247 (493)
43 KOG0316 Conserved WD40 repeat- 99.8 1.9E-19 4.1E-24 191.5 17.2 208 315-584 48-258 (307)
44 KOG0315 G-protein beta subunit 99.8 6.9E-19 1.5E-23 188.7 21.3 208 318-584 32-289 (311)
45 KOG0274 Cdc4 and related F-box 99.8 5.2E-19 1.1E-23 216.3 22.4 195 325-585 207-402 (537)
46 PTZ00420 coronin; Provisional 99.8 4.4E-18 9.5E-23 209.0 27.2 144 376-541 63-214 (568)
47 PTZ00420 coronin; Provisional 99.8 1.1E-17 2.4E-22 205.4 29.9 222 318-583 66-293 (568)
48 cd00200 WD40 WD40 domain, foun 99.8 7.8E-17 1.7E-21 174.1 32.8 205 318-581 85-289 (289)
49 KOG0282 mRNA splicing factor [ 99.8 1.5E-19 3.3E-24 207.7 11.5 208 317-581 205-503 (503)
50 cd00200 WD40 WD40 domain, foun 99.8 3E-17 6.6E-22 177.3 26.5 206 320-584 3-208 (289)
51 PLN00181 protein SPA1-RELATED; 99.8 2.2E-17 4.9E-22 213.1 28.2 217 321-583 478-738 (793)
52 KOG0283 WD40 repeat-containing 99.8 7.6E-18 1.7E-22 204.7 21.2 216 319-583 259-532 (712)
53 KOG0306 WD40-repeat-containing 99.8 1.5E-17 3.3E-22 198.4 23.0 218 319-583 447-664 (888)
54 KOG0265 U5 snRNP-specific prot 99.8 4.2E-17 9.2E-22 179.0 24.6 262 214-546 44-318 (338)
55 KOG0973 Histone transcription 99.8 2E-17 4.3E-22 205.3 23.5 239 316-583 59-312 (942)
56 KOG0275 Conserved WD40 repeat- 99.8 4.3E-19 9.3E-24 194.6 7.8 187 324-546 211-402 (508)
57 KOG0277 Peroxisomal targeting 99.8 2.2E-17 4.8E-22 177.7 19.8 208 318-581 96-307 (311)
58 KOG0293 WD40 repeat-containing 99.8 1.3E-17 2.8E-22 188.4 18.3 215 317-583 215-513 (519)
59 PLN00181 protein SPA1-RELATED; 99.8 5.2E-16 1.1E-20 200.5 35.2 170 318-529 567-743 (793)
60 KOG0645 WD40 repeat protein [G 99.8 3.6E-16 7.7E-21 169.9 27.4 275 153-583 27-311 (312)
61 KOG1332 Vesicle coat complex C 99.7 1.3E-17 2.9E-22 178.6 14.1 212 323-583 8-241 (299)
62 KOG0301 Phospholipase A2-activ 99.7 3.3E-17 7.1E-22 194.7 18.4 197 317-583 92-288 (745)
63 KOG0275 Conserved WD40 repeat- 99.7 5.7E-18 1.2E-22 185.8 11.0 205 316-581 253-507 (508)
64 KOG0269 WD40 repeat-containing 99.7 1.2E-17 2.5E-22 200.3 14.5 194 344-584 102-297 (839)
65 KOG0316 Conserved WD40 repeat- 99.7 4.4E-17 9.6E-22 173.6 16.2 165 378-584 8-174 (307)
66 KOG0318 WD40 repeat stress pro 99.7 3.8E-16 8.3E-21 181.1 25.1 187 319-533 52-274 (603)
67 KOG0264 Nucleosome remodeling 99.7 9.5E-17 2.1E-21 184.3 19.4 219 318-584 169-405 (422)
68 KOG0301 Phospholipase A2-activ 99.7 2.7E-17 5.9E-22 195.4 15.1 176 345-583 74-249 (745)
69 KOG0294 WD40 repeat-containing 99.7 1.5E-16 3.3E-21 175.6 19.8 215 318-584 35-282 (362)
70 KOG0267 Microtubule severing p 99.7 6.9E-18 1.5E-22 200.8 8.2 208 320-586 22-229 (825)
71 KOG0282 mRNA splicing factor [ 99.7 6.9E-18 1.5E-22 194.3 7.9 166 378-583 205-372 (503)
72 KOG0296 Angio-associated migra 99.7 1.3E-15 2.9E-20 170.8 25.3 179 316-536 54-232 (399)
73 KOG0270 WD40 repeat-containing 99.7 1.4E-16 3E-21 182.1 17.3 206 343-584 193-405 (463)
74 KOG0296 Angio-associated migra 99.7 1.2E-15 2.6E-20 171.2 23.5 205 318-582 98-397 (399)
75 KOG0640 mRNA cleavage stimulat 99.7 1.7E-16 3.6E-21 174.3 14.3 220 318-583 104-335 (430)
76 KOG0310 Conserved WD40 repeat- 99.7 4E-16 8.7E-21 180.2 17.2 203 321-584 63-269 (487)
77 KOG0643 Translation initiation 99.7 2.3E-15 5E-20 163.2 21.8 204 321-584 5-221 (327)
78 KOG0278 Serine/threonine kinas 99.7 1.1E-15 2.3E-20 164.2 19.0 163 378-583 134-297 (334)
79 KOG0308 Conserved WD40 repeat- 99.7 4.2E-16 9.1E-21 184.2 16.8 212 318-585 65-287 (735)
80 KOG0641 WD40 repeat protein [G 99.7 3.6E-15 7.9E-20 157.8 21.9 215 321-583 84-349 (350)
81 KOG0302 Ribosome Assembly prot 99.7 6.5E-16 1.4E-20 173.6 16.9 169 316-525 201-379 (440)
82 KOG0305 Anaphase promoting com 99.7 4.9E-15 1.1E-19 176.7 23.9 208 319-584 252-462 (484)
83 KOG0302 Ribosome Assembly prot 99.7 1.9E-15 4.2E-20 169.9 18.7 222 321-584 146-379 (440)
84 KOG0300 WD40 repeat-containing 99.7 3.5E-15 7.6E-20 164.0 19.7 207 317-583 263-476 (481)
85 KOG0306 WD40-repeat-containing 99.7 5.3E-15 1.1E-19 177.1 22.8 158 326-525 508-665 (888)
86 KOG0269 WD40 repeat-containing 99.7 5E-16 1.1E-20 186.5 13.8 212 318-582 125-339 (839)
87 KOG0308 Conserved WD40 repeat- 99.7 2.8E-15 6.1E-20 177.3 19.9 179 317-526 108-287 (735)
88 KOG0289 mRNA splicing factor [ 99.7 1.9E-15 4.2E-20 172.1 17.8 188 344-586 233-422 (506)
89 KOG1408 WD40 repeat protein [F 99.6 5E-14 1.1E-18 167.2 28.6 210 324-583 457-713 (1080)
90 KOG0288 WD40 repeat protein Ti 99.6 4.3E-15 9.4E-20 168.7 17.9 202 317-581 252-459 (459)
91 KOG0641 WD40 repeat protein [G 99.6 7.8E-14 1.7E-18 147.8 24.5 219 324-583 30-303 (350)
92 KOG0268 Sof1-like rRNA process 99.6 1.9E-15 4.1E-20 169.2 12.6 207 314-583 54-302 (433)
93 KOG0267 Microtubule severing p 99.6 5.2E-16 1.1E-20 185.1 8.6 183 318-544 62-246 (825)
94 KOG0289 mRNA splicing factor [ 99.6 7.1E-15 1.5E-19 167.6 17.2 178 316-537 251-432 (506)
95 KOG0305 Anaphase promoting com 99.6 1.8E-14 3.8E-19 172.0 19.7 200 326-583 217-419 (484)
96 KOG1539 WD repeat protein [Gen 99.6 9.1E-13 2E-17 159.9 34.0 198 325-583 447-648 (910)
97 KOG1446 Histone H3 (Lys4) meth 99.6 2E-13 4.3E-18 151.7 24.5 215 320-584 8-263 (311)
98 KOG0650 WD40 repeat nucleolar 99.6 1.2E-14 2.6E-19 170.6 15.5 284 152-521 411-732 (733)
99 KOG0646 WD40 repeat protein [G 99.6 4.1E-14 8.9E-19 163.0 19.3 200 326-583 81-307 (476)
100 KOG0646 WD40 repeat protein [G 99.6 1.2E-13 2.7E-18 159.1 22.9 196 317-544 114-327 (476)
101 KOG0303 Actin-binding protein 99.6 1.4E-14 3E-19 163.7 14.2 172 380-587 74-253 (472)
102 KOG0772 Uncharacterized conser 99.6 1.3E-13 2.9E-18 159.7 22.5 207 321-581 263-485 (641)
103 KOG0772 Uncharacterized conser 99.6 5.5E-14 1.2E-18 162.8 18.6 215 318-587 159-398 (641)
104 KOG0283 WD40 repeat-containing 99.6 1.8E-13 3.9E-18 167.1 23.8 206 316-584 359-577 (712)
105 KOG0973 Histone transcription 99.5 5.9E-14 1.3E-18 174.8 17.7 178 338-541 19-218 (942)
106 KOG1407 WD40 repeat protein [F 99.5 1.1E-13 2.4E-18 150.0 17.5 186 320-545 14-240 (313)
107 KOG0299 U3 snoRNP-associated p 99.5 2.3E-13 5E-18 156.7 21.0 167 323-533 199-365 (479)
108 KOG0310 Conserved WD40 repeat- 99.5 1.5E-13 3.3E-18 159.2 19.5 182 319-546 103-289 (487)
109 KOG0268 Sof1-like rRNA process 99.5 4.4E-14 9.5E-19 158.4 14.0 223 318-586 101-348 (433)
110 KOG4283 Transcription-coupled 99.5 2.4E-13 5.1E-18 149.1 19.0 235 322-586 39-279 (397)
111 KOG0303 Actin-binding protein 99.5 4E-13 8.7E-18 152.1 21.3 176 319-525 74-250 (472)
112 KOG0299 U3 snoRNP-associated p 99.5 1.3E-13 2.7E-18 158.8 16.6 217 319-584 135-357 (479)
113 KOG0640 mRNA cleavage stimulat 99.5 8.7E-14 1.9E-18 153.1 12.5 177 317-535 163-346 (430)
114 KOG0270 WD40 repeat-containing 99.5 9.5E-13 2.1E-17 151.2 21.4 198 289-525 203-405 (463)
115 KOG0321 WD40 repeat-containing 99.5 2.2E-13 4.8E-18 161.3 16.7 220 319-589 93-397 (720)
116 KOG2096 WD40 repeat protein [G 99.5 2.4E-13 5.2E-18 150.3 15.4 168 380-583 79-308 (420)
117 KOG0288 WD40 repeat protein Ti 99.5 1.5E-13 3.2E-18 156.4 13.7 203 318-583 211-417 (459)
118 KOG2445 Nuclear pore complex c 99.5 2.7E-12 5.8E-17 142.0 22.3 206 323-582 10-317 (361)
119 KOG1407 WD40 repeat protein [F 99.5 5.7E-12 1.2E-16 136.9 24.0 132 345-507 162-293 (313)
120 KOG0647 mRNA export protein (c 99.5 1E-12 2.2E-17 145.1 18.5 200 338-583 33-281 (347)
121 KOG1332 Vesicle coat complex C 99.5 7.1E-13 1.5E-17 142.7 16.6 176 319-524 95-286 (299)
122 KOG0643 Translation initiation 99.5 1.9E-12 4.1E-17 140.9 19.9 168 382-585 5-179 (327)
123 KOG4283 Transcription-coupled 99.5 3.6E-13 7.8E-18 147.7 14.4 164 383-584 39-220 (397)
124 KOG0294 WD40 repeat-containing 99.5 2.4E-12 5.2E-17 142.8 19.3 164 344-533 3-166 (362)
125 KOG0293 WD40 repeat-containing 99.4 4E-12 8.7E-17 144.5 19.2 252 219-524 226-513 (519)
126 KOG1446 Histone H3 (Lys4) meth 99.4 5.4E-11 1.2E-15 132.6 26.7 194 303-544 81-283 (311)
127 KOG1007 WD repeat protein TSSC 99.4 5.4E-12 1.2E-16 138.5 18.1 246 225-524 71-361 (370)
128 KOG1273 WD40 repeat protein [G 99.4 7.4E-12 1.6E-16 138.7 19.1 171 339-541 30-297 (405)
129 KOG0307 Vesicle coat complex C 99.4 3.9E-13 8.4E-18 168.2 10.2 199 345-586 83-287 (1049)
130 KOG0278 Serine/threonine kinas 99.4 4.9E-12 1.1E-16 136.4 17.2 167 317-528 134-301 (334)
131 KOG0642 Cell-cycle nuclear pro 99.4 3.3E-12 7.1E-17 150.3 16.2 212 319-583 287-561 (577)
132 KOG1517 Guanine nucleotide bin 99.4 2.8E-12 6E-17 158.2 14.3 309 158-527 1010-1384(1387)
133 KOG4378 Nuclear protein COP1 [ 99.4 2.6E-11 5.7E-16 140.2 21.3 188 318-546 113-303 (673)
134 KOG1036 Mitotic spindle checkp 99.4 3.2E-11 6.9E-16 133.9 19.3 176 324-546 52-284 (323)
135 KOG1034 Transcriptional repres 99.3 1.7E-11 3.6E-16 136.8 16.6 101 345-474 108-211 (385)
136 KOG1274 WD40 repeat protein [G 99.3 1.1E-10 2.4E-15 143.5 25.0 202 325-587 55-266 (933)
137 KOG0307 Vesicle coat complex C 99.3 2.9E-12 6.3E-17 160.5 11.4 213 318-583 108-327 (1049)
138 KOG1445 Tumor-specific antigen 99.3 7.3E-12 1.6E-16 147.4 13.6 162 338-525 636-799 (1012)
139 KOG1274 WD40 repeat protein [G 99.3 1E-10 2.2E-15 143.9 23.3 144 344-525 110-263 (933)
140 KOG2048 WD40 repeat protein [G 99.3 1.8E-10 3.8E-15 138.2 24.1 167 322-530 21-190 (691)
141 KOG0649 WD40 repeat protein [G 99.3 9.6E-11 2.1E-15 126.3 19.1 194 317-543 53-256 (325)
142 KOG0321 WD40 repeat-containing 99.3 1.9E-11 4.2E-16 145.2 14.4 153 344-527 66-251 (720)
143 KOG0290 Conserved WD40 repeat- 99.3 6.1E-11 1.3E-15 130.5 16.6 213 323-584 93-319 (364)
144 KOG0639 Transducin-like enhanc 99.3 4.4E-11 9.5E-16 138.5 16.2 170 345-556 524-693 (705)
145 KOG0647 mRNA export protein (c 99.3 1.2E-10 2.6E-15 128.9 18.7 183 321-544 67-301 (347)
146 KOG1408 WD40 repeat protein [F 99.3 1.7E-10 3.8E-15 137.7 20.8 170 316-525 537-714 (1080)
147 KOG2106 Uncharacterized conser 99.3 3.1E-09 6.8E-14 123.9 29.5 187 324-546 285-501 (626)
148 KOG1007 WD repeat protein TSSC 99.3 6E-10 1.3E-14 122.6 22.0 192 288-523 93-288 (370)
149 KOG0649 WD40 repeat protein [G 99.3 2.7E-10 5.9E-15 122.8 19.0 163 345-538 25-200 (325)
150 KOG0639 Transducin-like enhanc 99.3 5.1E-11 1.1E-15 138.0 14.3 196 328-582 467-662 (705)
151 KOG0642 Cell-cycle nuclear pro 99.2 6E-11 1.3E-15 139.9 15.0 188 317-537 335-574 (577)
152 TIGR03866 PQQ_ABC_repeats PQQ- 99.2 1.2E-09 2.5E-14 122.4 24.4 184 344-584 3-188 (300)
153 KOG4328 WD40 protein [Function 99.2 1.1E-10 2.4E-15 134.8 15.9 210 318-583 178-399 (498)
154 KOG1034 Transcriptional repres 99.2 2.8E-10 6E-15 127.2 17.6 123 386-526 88-213 (385)
155 KOG2048 WD40 repeat protein [G 99.2 1.6E-09 3.5E-14 130.1 25.0 162 344-542 124-297 (691)
156 KOG1539 WD repeat protein [Gen 99.2 3.9E-09 8.4E-14 129.1 28.5 187 344-583 174-365 (910)
157 KOG1009 Chromatin assembly com 99.2 8.3E-11 1.8E-15 134.3 13.2 153 344-525 28-196 (434)
158 COG2319 FOG: WD40 repeat [Gene 99.2 4.1E-09 8.8E-14 118.9 26.6 185 318-544 147-336 (466)
159 COG2319 FOG: WD40 repeat [Gene 99.2 5.2E-09 1.1E-13 118.1 25.7 207 321-585 60-273 (466)
160 KOG1063 RNA polymerase II elon 99.2 1.4E-09 3E-14 130.7 21.8 210 318-584 353-649 (764)
161 KOG0644 Uncharacterized conser 99.2 1.3E-11 2.8E-16 149.4 4.5 210 318-584 182-427 (1113)
162 KOG2106 Uncharacterized conser 99.2 5.1E-07 1.1E-11 105.9 41.6 357 105-582 211-625 (626)
163 KOG1188 WD40 repeat protein [G 99.2 3.3E-10 7.1E-15 127.3 15.2 147 344-526 42-198 (376)
164 KOG1445 Tumor-specific antigen 99.2 6.4E-11 1.4E-15 139.6 10.0 119 388-527 628-753 (1012)
165 KOG4378 Nuclear protein COP1 [ 99.2 6E-10 1.3E-14 129.2 17.6 186 344-584 93-281 (673)
166 KOG4328 WD40 protein [Function 99.2 3.2E-10 7E-15 131.0 15.2 176 378-590 177-360 (498)
167 KOG2445 Nuclear pore complex c 99.2 3.5E-09 7.5E-14 117.8 21.8 180 318-524 104-318 (361)
168 KOG1273 WD40 repeat protein [G 99.1 7.6E-10 1.7E-14 123.0 15.7 155 390-585 26-228 (405)
169 KOG1036 Mitotic spindle checkp 99.1 8.5E-10 1.8E-14 122.8 15.8 155 387-587 13-167 (323)
170 KOG1009 Chromatin assembly com 99.1 3.9E-10 8.4E-15 128.9 13.4 136 387-544 13-173 (434)
171 KOG2096 WD40 repeat protein [G 99.1 1.4E-09 3.1E-14 120.9 17.1 102 408-524 199-308 (420)
172 KOG2394 WD40 protein DMR-N9 [G 99.1 7.7E-10 1.7E-14 129.7 15.1 169 344-545 187-383 (636)
173 TIGR03866 PQQ_ABC_repeats PQQ- 99.1 1.3E-08 2.8E-13 114.0 24.6 151 346-535 47-198 (300)
174 KOG1587 Cytoplasmic dynein int 99.0 1.2E-08 2.7E-13 125.4 22.6 257 220-525 248-517 (555)
175 KOG1310 WD40 repeat protein [G 99.0 4.7E-10 1E-14 131.3 9.5 128 379-527 42-181 (758)
176 KOG2919 Guanine nucleotide-bin 99.0 2.4E-08 5.1E-13 111.7 21.1 192 344-587 125-331 (406)
177 KOG1310 WD40 repeat protein [G 99.0 5.5E-10 1.2E-14 130.7 8.5 168 318-524 42-231 (758)
178 KOG1063 RNA polymerase II elon 99.0 3.8E-09 8.3E-14 127.0 14.2 170 318-524 517-699 (764)
179 KOG0290 Conserved WD40 repeat- 99.0 1E-08 2.3E-13 113.2 16.2 167 323-525 147-319 (364)
180 KOG0650 WD40 repeat nucleolar 98.9 2.4E-08 5.2E-13 118.6 18.0 169 378-584 391-596 (733)
181 KOG0644 Uncharacterized conser 98.9 1.4E-10 3E-15 140.7 -0.6 121 377-524 180-300 (1113)
182 KOG2919 Guanine nucleotide-bin 98.9 6.9E-09 1.5E-13 115.9 12.3 191 322-544 151-348 (406)
183 KOG1188 WD40 repeat protein [G 98.9 1.2E-08 2.6E-13 114.9 14.0 153 408-584 40-197 (376)
184 KOG0322 G-protein beta subunit 98.9 4.4E-09 9.6E-14 114.9 9.5 152 344-523 167-322 (323)
185 PF08662 eIF2A: Eukaryotic tra 98.9 5.7E-08 1.2E-12 105.6 17.3 123 386-531 58-185 (194)
186 KOG1538 Uncharacterized conser 98.9 6.9E-09 1.5E-13 123.4 10.8 171 335-550 15-190 (1081)
187 KOG0771 Prolactin regulatory e 98.9 1.7E-08 3.8E-13 116.4 13.8 152 391-583 148-354 (398)
188 KOG0974 WD-repeat protein WDR6 98.9 3.5E-08 7.6E-13 123.7 17.2 141 344-525 147-289 (967)
189 KOG1524 WD40 repeat-containing 98.9 1.5E-08 3.2E-13 118.8 12.9 161 344-546 77-237 (737)
190 KOG2394 WD40 protein DMR-N9 [G 98.8 3.6E-08 7.7E-13 116.1 15.1 150 327-496 220-384 (636)
191 KOG0974 WD-repeat protein WDR6 98.8 6.7E-08 1.5E-12 121.2 16.6 145 408-585 145-290 (967)
192 KOG0322 G-protein beta subunit 98.8 6E-08 1.3E-12 106.3 13.7 210 317-582 5-322 (323)
193 KOG4227 WD40 repeat protein [G 98.8 3.7E-08 8.1E-13 111.7 11.5 126 379-527 48-182 (609)
194 KOG1517 Guanine nucleotide bin 98.7 7.3E-07 1.6E-11 111.6 22.5 167 327-527 1110-1290(1387)
195 KOG2055 WD40 repeat protein [G 98.7 4.9E-07 1.1E-11 105.3 18.4 167 327-535 214-385 (514)
196 KOG2055 WD40 repeat protein [G 98.7 1E-06 2.2E-11 102.7 20.3 187 344-583 317-512 (514)
197 KOG1240 Protein kinase contain 98.7 8.2E-07 1.8E-11 112.7 20.9 152 372-546 1034-1248(1431)
198 KOG0771 Prolactin regulatory e 98.7 1.2E-07 2.6E-12 109.6 12.6 133 344-507 158-345 (398)
199 KOG1523 Actin-related protein 98.7 2.5E-07 5.5E-12 103.8 14.3 160 325-523 9-175 (361)
200 KOG1587 Cytoplasmic dynein int 98.7 7.4E-07 1.6E-11 110.0 19.3 213 326-586 242-475 (555)
201 KOG2110 Uncharacterized conser 98.7 9.2E-07 2E-11 101.0 18.4 151 338-527 93-251 (391)
202 KOG1272 WD40-repeat-containing 98.6 7.9E-08 1.7E-12 111.7 8.7 134 376-533 199-332 (545)
203 KOG1524 WD40 repeat-containing 98.6 3E-07 6.4E-12 108.2 11.7 159 320-527 98-258 (737)
204 KOG4227 WD40 repeat protein [G 98.6 6.5E-07 1.4E-11 101.9 13.8 173 317-526 47-227 (609)
205 PF08662 eIF2A: Eukaryotic tra 98.5 4.6E-06 1E-10 90.7 19.1 137 420-583 39-179 (194)
206 KOG4547 WD40 repeat-containing 98.5 4.1E-06 8.9E-11 100.6 20.2 123 408-546 70-194 (541)
207 KOG1538 Uncharacterized conser 98.5 5.6E-06 1.2E-10 99.4 20.6 197 316-543 43-270 (1081)
208 KOG1272 WD40-repeat-containing 98.5 1.8E-07 3.8E-12 108.9 7.0 168 338-546 215-389 (545)
209 KOG1240 Protein kinase contain 98.5 9E-06 1.9E-10 103.7 22.0 234 317-584 1039-1335(1431)
210 KOG2110 Uncharacterized conser 98.5 1.7E-05 3.6E-10 91.0 21.9 127 388-539 88-219 (391)
211 PRK01742 tolB translocation pr 98.4 2.7E-06 5.9E-11 103.2 16.4 165 338-545 253-424 (429)
212 KOG3881 Uncharacterized conser 98.4 1.4E-05 3E-10 92.1 19.4 197 338-583 111-320 (412)
213 KOG1523 Actin-related protein 98.4 4.3E-06 9.2E-11 94.2 13.9 172 317-527 46-239 (361)
214 KOG4547 WD40 repeat-containing 98.3 8.8E-06 1.9E-10 97.8 15.7 143 344-525 72-221 (541)
215 KOG2315 Predicted translation 98.3 0.00094 2E-08 80.4 32.1 124 387-531 270-396 (566)
216 KOG3881 Uncharacterized conser 98.3 7.9E-06 1.7E-10 94.1 13.6 164 338-529 157-325 (412)
217 PRK01742 tolB translocation pr 98.3 3.5E-05 7.7E-10 93.6 20.0 160 321-530 198-367 (429)
218 KOG2111 Uncharacterized conser 98.3 3.8E-05 8.2E-10 86.8 18.1 105 409-527 149-259 (346)
219 KOG2139 WD40 repeat protein [G 98.2 1.3E-05 2.8E-10 91.5 14.3 162 344-546 112-290 (445)
220 PRK04922 tolB translocation pr 98.2 0.0004 8.8E-09 84.5 27.7 164 338-539 253-425 (433)
221 PRK11028 6-phosphogluconolacto 98.2 5.9E-05 1.3E-09 87.9 19.5 115 389-526 127-260 (330)
222 KOG1334 WD40 repeat protein [G 98.2 5.8E-06 1.3E-10 97.1 10.1 213 318-581 134-464 (559)
223 KOG0309 Conserved WD40 repeat- 98.1 8.3E-06 1.8E-10 99.2 10.5 281 238-585 54-341 (1081)
224 KOG4190 Uncharacterized conser 98.1 5.4E-06 1.2E-10 97.5 8.1 183 318-535 727-917 (1034)
225 PRK05137 tolB translocation pr 98.1 0.00024 5.1E-09 86.6 22.3 131 378-530 192-328 (435)
226 KOG1064 RAVE (regulator of V-A 98.1 1E-05 2.3E-10 105.9 10.8 148 344-534 2222-2376(2439)
227 KOG0280 Uncharacterized conser 98.1 3.4E-05 7.4E-10 86.3 12.9 148 344-526 135-286 (339)
228 KOG2139 WD40 repeat protein [G 98.0 0.00011 2.5E-09 84.0 16.6 108 382-506 191-300 (445)
229 PRK11028 6-phosphogluconolacto 98.0 0.00043 9.3E-09 80.7 22.1 143 346-525 6-157 (330)
230 PRK04922 tolB translocation pr 98.0 0.00028 6E-09 85.9 21.2 167 322-529 199-373 (433)
231 PRK03629 tolB translocation pr 98.0 0.00022 4.9E-09 86.8 20.3 169 338-544 248-425 (429)
232 KOG2321 WD40 repeat protein [G 98.0 4.3E-05 9.4E-10 91.4 13.4 154 345-537 148-315 (703)
233 PRK05137 tolB translocation pr 98.0 0.00036 7.8E-09 85.0 21.8 167 320-527 195-369 (435)
234 KOG2111 Uncharacterized conser 98.0 0.00018 3.9E-09 81.5 16.9 100 348-475 155-257 (346)
235 KOG1963 WD40 repeat protein [G 98.0 0.00013 2.9E-09 91.1 17.2 169 324-533 203-384 (792)
236 PRK03629 tolB translocation pr 98.0 0.00051 1.1E-08 83.6 22.3 121 390-533 245-371 (429)
237 KOG1963 WD40 repeat protein [G 97.9 6.1E-05 1.3E-09 94.1 13.1 128 385-536 203-334 (792)
238 KOG1409 Uncharacterized conser 97.9 0.00013 2.8E-09 83.2 14.6 210 318-584 16-271 (404)
239 PF00400 WD40: WD domain, G-be 97.9 3.1E-05 6.6E-10 61.5 6.9 39 377-424 1-39 (39)
240 KOG2695 WD40 repeat protein [G 97.9 1.8E-05 3.9E-10 89.9 7.6 126 386-534 251-386 (425)
241 PRK02889 tolB translocation pr 97.9 0.00054 1.2E-08 83.4 20.7 130 378-529 186-321 (427)
242 PRK02889 tolB translocation pr 97.9 0.00032 6.9E-09 85.3 18.6 166 324-530 193-366 (427)
243 PF00400 WD40: WD domain, G-be 97.9 2.9E-05 6.3E-10 61.6 6.0 39 428-472 1-39 (39)
244 KOG1409 Uncharacterized conser 97.9 0.00018 3.9E-09 82.1 14.3 164 326-527 68-273 (404)
245 KOG2321 WD40 repeat protein [G 97.8 0.00016 3.5E-09 86.7 13.3 121 411-545 148-280 (703)
246 KOG0280 Uncharacterized conser 97.8 7.6E-05 1.6E-09 83.6 10.0 172 318-527 157-336 (339)
247 TIGR02800 propeller_TolB tol-p 97.8 0.0014 3.1E-08 78.6 21.4 125 383-528 229-358 (417)
248 PF02239 Cytochrom_D1: Cytochr 97.8 0.00042 9.1E-09 82.9 16.3 113 409-535 6-119 (369)
249 KOG3914 WD repeat protein WDR4 97.8 0.00025 5.5E-09 82.4 13.1 108 410-533 124-232 (390)
250 TIGR02800 propeller_TolB tol-p 97.7 0.0038 8.2E-08 75.0 23.7 128 380-529 182-315 (417)
251 PF02239 Cytochrom_D1: Cytochr 97.7 0.0022 4.9E-08 76.7 21.2 151 345-533 9-211 (369)
252 KOG4190 Uncharacterized conser 97.7 8.4E-05 1.8E-09 87.9 8.0 130 379-533 727-868 (1034)
253 KOG0309 Conserved WD40 repeat- 97.7 0.00012 2.7E-09 89.3 9.6 162 390-587 70-236 (1081)
254 PRK01029 tolB translocation pr 97.7 0.003 6.5E-08 77.1 21.2 134 378-532 271-411 (428)
255 KOG2695 WD40 repeat protein [G 97.6 0.00022 4.7E-09 81.4 10.0 119 344-485 266-387 (425)
256 KOG1064 RAVE (regulator of V-A 97.6 6E-05 1.3E-09 99.1 6.2 121 377-534 2282-2408(2439)
257 KOG1334 WD40 repeat protein [G 97.6 0.00015 3.3E-09 85.6 8.0 134 378-532 133-271 (559)
258 PRK00178 tolB translocation pr 97.5 0.008 1.7E-07 73.0 21.7 120 387-528 242-367 (430)
259 PRK01029 tolB translocation pr 97.4 0.017 3.7E-07 70.6 23.7 124 388-531 231-366 (428)
260 KOG1912 WD40 repeat protein [G 97.4 0.0024 5.2E-08 79.1 15.7 142 338-498 21-167 (1062)
261 TIGR03300 assembly_YfgL outer 97.4 0.13 2.8E-06 61.4 30.3 109 409-537 242-351 (377)
262 PRK00178 tolB translocation pr 97.4 0.0073 1.6E-07 73.3 19.6 129 380-530 191-325 (430)
263 PRK04792 tolB translocation pr 97.4 0.017 3.6E-07 71.0 22.7 128 381-530 211-344 (448)
264 PRK04792 tolB translocation pr 97.4 0.012 2.6E-07 72.3 21.3 155 338-528 223-386 (448)
265 KOG3914 WD repeat protein WDR4 97.3 0.00068 1.5E-08 79.0 9.2 87 381-483 145-232 (390)
266 KOG4714 Nucleoporin [Nuclear s 97.3 0.00045 9.8E-09 76.5 6.6 94 419-525 160-255 (319)
267 PF11768 DUF3312: Protein of u 97.1 0.11 2.4E-06 63.9 25.4 73 385-474 257-329 (545)
268 KOG2315 Predicted translation 97.1 0.0088 1.9E-07 72.4 15.5 139 418-582 251-389 (566)
269 PLN02919 haloacid dehalogenase 97.0 0.077 1.7E-06 71.7 25.2 116 391-529 686-838 (1057)
270 TIGR03300 assembly_YfgL outer 97.0 0.47 1E-05 56.6 29.5 95 409-521 280-376 (377)
271 PLN02919 haloacid dehalogenase 97.0 0.027 5.8E-07 76.1 20.7 117 390-528 742-892 (1057)
272 KOG4714 Nucleoporin [Nuclear s 97.0 0.002 4.4E-08 71.5 8.3 74 389-475 181-255 (319)
273 KOG2041 WD40 repeat protein [G 96.9 0.0026 5.5E-08 78.0 9.1 169 327-524 15-186 (1189)
274 KOG1354 Serine/threonine prote 96.9 0.0047 1E-07 70.9 10.5 134 379-536 155-314 (433)
275 COG4946 Uncharacterized protei 96.9 0.74 1.6E-05 55.4 28.5 142 384-550 356-498 (668)
276 KOG0882 Cyclophilin-related pe 96.8 0.002 4.3E-08 75.9 7.0 170 324-533 7-240 (558)
277 KOG1275 PAB-dependent poly(A) 96.8 0.0094 2E-07 75.3 12.8 139 344-522 189-340 (1118)
278 KOG1354 Serine/threonine prote 96.7 0.024 5.2E-07 65.3 14.2 118 387-527 213-362 (433)
279 KOG2066 Vacuolar assembly/sort 96.7 0.013 2.7E-07 73.6 12.8 154 339-539 46-202 (846)
280 PF13360 PQQ_2: PQQ-like domai 96.7 0.91 2E-05 49.9 26.2 102 409-530 123-236 (238)
281 PF11768 DUF3312: Protein of u 96.6 0.013 2.9E-07 71.7 11.8 76 437-528 258-333 (545)
282 PF10282 Lactonase: Lactonase, 96.6 0.42 9.1E-06 56.7 24.3 123 388-531 192-331 (345)
283 KOG4532 WD40-like repeat conta 96.5 0.083 1.8E-06 59.4 16.4 148 344-532 130-290 (344)
284 KOG1832 HIV-1 Vpr-binding prot 96.5 0.0014 3E-08 81.8 2.7 167 318-534 1093-1265(1516)
285 KOG1832 HIV-1 Vpr-binding prot 96.4 0.0029 6.4E-08 79.0 4.8 130 378-534 1092-1225(1516)
286 KOG1645 RING-finger-containing 96.3 0.0094 2E-07 69.7 8.0 94 420-527 175-269 (463)
287 KOG4532 WD40-like repeat conta 96.3 0.14 3E-06 57.7 16.3 147 329-505 161-321 (344)
288 COG5170 CDC55 Serine/threonine 96.2 0.017 3.7E-07 65.5 9.0 118 388-526 86-254 (460)
289 KOG1912 WD40 repeat protein [G 96.2 0.041 8.8E-07 68.8 12.8 147 390-556 18-176 (1062)
290 KOG4497 Uncharacterized conser 96.2 0.11 2.3E-06 59.8 15.2 141 345-525 64-241 (447)
291 smart00320 WD40 WD40 repeats. 96.2 0.015 3.3E-07 42.7 5.8 39 428-472 2-40 (40)
292 PF04762 IKI3: IKI3 family; I 96.1 0.38 8.2E-06 64.3 22.2 206 326-587 75-337 (928)
293 smart00320 WD40 WD40 repeats. 96.0 0.018 3.9E-07 42.3 5.5 39 476-522 2-40 (40)
294 PF04762 IKI3: IKI3 family; I 96.0 10 0.00023 51.1 36.2 99 45-158 85-191 (928)
295 PF14783 BBS2_Mid: Ciliary BBS 95.9 0.42 9.1E-06 47.7 16.1 100 390-507 2-105 (111)
296 KOG1008 Uncharacterized conser 95.9 0.0029 6.3E-08 77.3 1.3 189 344-585 72-277 (783)
297 KOG1275 PAB-dependent poly(A) 95.9 0.1 2.2E-06 66.5 14.3 140 341-523 146-295 (1118)
298 COG4946 Uncharacterized protei 95.8 0.41 8.9E-06 57.4 17.9 132 343-506 372-508 (668)
299 PF13360 PQQ_2: PQQ-like domai 95.8 0.32 6.9E-06 53.5 16.6 113 409-537 37-153 (238)
300 TIGR02658 TTQ_MADH_Hv methylam 95.6 0.4 8.8E-06 57.2 17.6 104 418-534 27-146 (352)
301 COG2706 3-carboxymuconate cycl 95.6 2.5 5.4E-05 49.8 23.1 124 391-536 92-234 (346)
302 KOG4497 Uncharacterized conser 95.5 0.036 7.8E-07 63.5 8.0 109 402-528 18-126 (447)
303 PF08450 SGL: SMP-30/Gluconola 95.5 3 6.4E-05 46.7 23.3 132 387-544 85-232 (246)
304 KOG4640 Anaphase-promoting com 95.2 0.073 1.6E-06 65.7 9.5 78 439-531 21-99 (665)
305 PF10282 Lactonase: Lactonase, 95.2 3.1 6.8E-05 49.4 23.2 118 388-527 87-227 (345)
306 COG5170 CDC55 Serine/threonine 95.0 0.048 1E-06 62.1 6.8 129 384-536 169-322 (460)
307 PRK04043 tolB translocation pr 94.9 1.9 4E-05 52.9 20.8 126 386-533 231-365 (419)
308 KOG1645 RING-finger-containing 94.7 0.062 1.4E-06 63.2 6.7 86 378-477 184-269 (463)
309 KOG2114 Vacuolar assembly/sort 94.6 1.5 3.3E-05 56.2 19.0 172 344-556 37-234 (933)
310 PRK11138 outer membrane biogen 94.6 14 0.00031 44.5 28.1 106 409-534 257-363 (394)
311 COG2706 3-carboxymuconate cycl 94.3 15 0.00033 43.5 24.9 101 390-505 147-262 (346)
312 PF15492 Nbas_N: Neuroblastoma 94.2 2 4.4E-05 49.2 17.2 171 338-535 49-270 (282)
313 PRK04043 tolB translocation pr 94.2 4.8 0.0001 49.4 22.1 123 389-532 189-317 (419)
314 KOG2041 WD40 repeat protein [G 94.2 0.17 3.6E-06 62.9 9.1 105 388-507 15-136 (1189)
315 KOG2114 Vacuolar assembly/sort 94.0 5.4 0.00012 51.5 21.7 118 344-488 139-258 (933)
316 KOG2314 Translation initiation 93.6 0.44 9.5E-06 58.2 10.9 109 391-526 214-336 (698)
317 COG5354 Uncharacterized protei 93.3 0.91 2E-05 55.2 12.9 123 382-524 269-395 (561)
318 KOG2066 Vacuolar assembly/sort 93.3 1.9 4.1E-05 55.1 16.1 154 344-537 85-248 (846)
319 TIGR02658 TTQ_MADH_Hv methylam 93.2 2.2 4.7E-05 51.1 16.0 109 409-532 207-338 (352)
320 KOG4640 Anaphase-promoting com 93.1 0.38 8.3E-06 59.7 9.7 77 389-481 22-99 (665)
321 KOG2314 Translation initiation 92.7 1.7 3.8E-05 53.3 14.2 131 386-536 249-393 (698)
322 PF15492 Nbas_N: Neuroblastoma 92.7 7.2 0.00016 44.9 18.4 106 391-506 47-167 (282)
323 PF08553 VID27: VID27 cytoplas 92.7 1.8 3.8E-05 56.6 15.4 131 373-523 510-646 (794)
324 KOG0882 Cyclophilin-related pe 92.7 1.1 2.3E-05 53.9 12.2 129 384-536 141-317 (558)
325 KOG3617 WD40 and TPR repeat-co 91.9 0.27 5.9E-06 62.1 6.5 92 417-524 40-131 (1416)
326 PRK11138 outer membrane biogen 91.8 36 0.00078 41.1 28.8 97 409-523 295-393 (394)
327 COG5354 Uncharacterized protei 91.6 2.3 4.9E-05 52.0 13.4 140 418-583 255-395 (561)
328 KOG3617 WD40 and TPR repeat-co 90.8 1.9 4E-05 55.1 12.0 70 390-474 62-131 (1416)
329 PF07433 DUF1513: Protein of u 90.8 14 0.00031 43.3 18.6 86 344-450 19-110 (305)
330 PF08596 Lgl_C: Lethal giant l 90.0 15 0.00032 44.9 18.7 195 319-535 79-301 (395)
331 KOG4649 PQQ (pyrrolo-quinoline 89.6 25 0.00054 40.3 18.2 70 409-484 64-133 (354)
332 PF08450 SGL: SMP-30/Gluconola 88.6 20 0.00044 40.0 17.5 103 386-503 132-242 (246)
333 KOG2444 WD40 repeat protein [G 87.4 1.4 3.1E-05 49.1 6.9 90 409-503 71-162 (238)
334 KOG2444 WD40 repeat protein [G 87.1 1.2 2.7E-05 49.5 6.3 103 344-474 72-177 (238)
335 KOG1920 IkappaB kinase complex 86.7 39 0.00084 45.7 20.0 159 327-528 69-277 (1265)
336 PF08596 Lgl_C: Lethal giant l 86.4 91 0.002 38.2 24.2 210 344-584 15-291 (395)
337 KOG2079 Vacuolar assembly/sort 86.1 1.7 3.6E-05 57.1 7.5 86 1131-1237 134-221 (1206)
338 PF04053 Coatomer_WDAD: Coatom 85.9 15 0.00032 45.6 15.4 135 338-524 38-173 (443)
339 KOG3621 WD40 repeat-containing 85.7 3.5 7.6E-05 52.2 9.8 104 408-525 45-155 (726)
340 KOG1916 Nuclear protein, conta 84.8 0.78 1.7E-05 58.8 3.8 148 383-547 128-293 (1283)
341 KOG4649 PQQ (pyrrolo-quinoline 84.1 13 0.00027 42.5 12.2 109 408-533 23-132 (354)
342 PF14783 BBS2_Mid: Ciliary BBS 84.1 30 0.00066 34.9 13.7 92 344-469 17-109 (111)
343 KOG1920 IkappaB kinase complex 84.0 17 0.00037 48.8 15.2 107 409-527 208-325 (1265)
344 PRK02888 nitrous-oxide reducta 82.7 26 0.00056 44.9 15.6 56 464-527 294-354 (635)
345 KOG2395 Protein involved in va 82.6 10 0.00022 47.0 11.5 131 373-523 362-499 (644)
346 KOG1008 Uncharacterized conser 82.4 0.68 1.5E-05 57.6 1.8 105 407-525 165-276 (783)
347 PF02897 Peptidase_S9_N: Proly 81.5 88 0.0019 37.9 19.6 111 402-526 133-262 (414)
348 KOG1916 Nuclear protein, conta 80.8 1 2.2E-05 57.8 2.6 127 389-529 182-328 (1283)
349 PF12894 Apc4_WD40: Anaphase-p 79.4 4.3 9.4E-05 34.5 5.1 33 487-528 12-44 (47)
350 PRK02888 nitrous-oxide reducta 79.2 17 0.00036 46.5 12.4 94 416-525 294-405 (635)
351 cd00216 PQQ_DH Dehydrogenases 78.9 99 0.0021 38.8 19.2 103 416-532 173-327 (488)
352 PF00780 CNH: CNH domain; Int 78.7 1.2E+02 0.0027 34.3 19.5 145 344-532 9-173 (275)
353 KOG2079 Vacuolar assembly/sort 78.4 5.3 0.00012 52.7 7.8 90 409-504 100-193 (1206)
354 PF12894 Apc4_WD40: Anaphase-p 77.5 3.4 7.4E-05 35.1 4.0 31 1131-1167 15-45 (47)
355 KOG1242 Protein containing ada 77.2 68 0.0015 40.7 16.5 247 804-1135 199-451 (569)
356 PF07433 DUF1513: Protein of u 77.2 35 0.00077 40.2 13.4 91 409-505 18-117 (305)
357 PF06433 Me-amine-dh_H: Methyl 76.9 9.3 0.0002 45.4 8.7 101 419-533 18-135 (342)
358 PF00780 CNH: CNH domain; Int 75.1 1.5E+02 0.0033 33.5 20.8 125 329-476 38-167 (275)
359 cd00216 PQQ_DH Dehydrogenases 74.6 95 0.0021 38.9 17.4 119 409-533 111-273 (488)
360 COG0823 TolB Periplasmic compo 74.1 5.1 0.00011 49.3 5.9 70 1133-1218 243-312 (425)
361 PF08553 VID27: VID27 cytoplas 72.5 35 0.00077 45.1 13.1 105 342-473 542-646 (794)
362 PF12234 Rav1p_C: RAVE protein 72.0 96 0.0021 40.2 16.4 95 415-523 48-155 (631)
363 PF07676 PD40: WD40-like Beta 70.3 9.2 0.0002 30.4 4.7 29 1187-1215 8-38 (39)
364 KOG3621 WD40 repeat-containing 69.7 18 0.00038 46.2 9.1 102 344-475 47-155 (726)
365 PF06977 SdiA-regulated: SdiA- 69.1 1E+02 0.0022 35.4 14.5 112 381-507 15-138 (248)
366 KOG4499 Ca2+-binding protein R 68.8 73 0.0016 36.3 12.6 92 440-544 159-261 (310)
367 COG0823 TolB Periplasmic compo 64.2 51 0.0011 40.8 11.6 130 380-533 233-367 (425)
368 TIGR03074 PQQ_membr_DH membran 64.0 3.1E+02 0.0067 36.7 19.2 61 465-533 413-486 (764)
369 PF00930 DPPIV_N: Dipeptidyl p 63.8 20 0.00042 42.8 7.9 83 417-507 22-121 (353)
370 PF04841 Vps16_N: Vps16, N-ter 62.8 3.7E+02 0.008 33.1 18.8 52 487-546 217-269 (410)
371 PF03088 Str_synth: Strictosid 62.1 27 0.00058 33.9 6.9 50 1153-1216 36-86 (89)
372 COG3391 Uncharacterized conser 62.0 1.7E+02 0.0037 35.4 15.5 109 408-530 86-196 (381)
373 PF15390 DUF4613: Domain of un 61.4 1.7E+02 0.0037 37.3 15.0 118 388-524 57-186 (671)
374 PF14655 RAB3GAP2_N: Rab3 GTPa 60.5 69 0.0015 39.5 11.7 88 431-534 300-408 (415)
375 TIGR03075 PQQ_enz_alc_DH PQQ-d 59.3 1.6E+02 0.0034 37.5 15.0 60 466-534 441-500 (527)
376 PF05096 Glu_cyclase_2: Glutam 58.9 3.4E+02 0.0073 31.6 16.0 122 387-535 44-168 (264)
377 PF03178 CPSF_A: CPSF A subuni 57.4 91 0.002 36.5 11.8 112 385-524 86-202 (321)
378 KOG2395 Protein involved in va 56.4 47 0.001 41.5 9.1 122 410-542 348-477 (644)
379 PF02897 Peptidase_S9_N: Proly 56.4 49 0.0011 40.1 9.7 75 1132-1221 128-213 (414)
380 PF11715 Nup160: Nucleoporin N 54.7 43 0.00093 42.4 9.1 39 489-535 217-259 (547)
381 PF10313 DUF2415: Uncharacteri 54.6 28 0.00061 29.3 4.8 34 1188-1221 1-36 (43)
382 COG3391 Uncharacterized conser 53.9 3.7E+02 0.008 32.6 16.5 122 389-531 117-246 (381)
383 COG3386 Gluconolactonase [Carb 53.9 1.6E+02 0.0036 34.8 13.0 108 421-542 144-260 (307)
384 PTZ00118 40S ribosomal protein 53.9 62 0.0013 37.3 9.1 102 32-156 83-189 (262)
385 PF00930 DPPIV_N: Dipeptidyl p 52.6 16 0.00036 43.5 4.6 81 1129-1218 44-131 (353)
386 PF05694 SBP56: 56kDa selenium 52.0 1.3E+02 0.0029 37.2 11.8 101 416-526 220-344 (461)
387 PF07569 Hira: TUP1-like enhan 51.4 72 0.0016 35.8 9.1 63 456-527 22-98 (219)
388 TIGR03074 PQQ_membr_DH membran 50.3 2.6E+02 0.0056 37.4 15.2 124 409-533 195-353 (764)
389 KOG4499 Ca2+-binding protein R 50.2 1.7E+02 0.0038 33.4 11.5 90 408-503 170-271 (310)
390 PF06433 Me-amine-dh_H: Methyl 50.1 58 0.0013 39.0 8.4 60 467-534 270-330 (342)
391 PF10168 Nup88: Nuclear pore c 47.5 2.2E+02 0.0048 37.7 13.8 72 440-526 86-181 (717)
392 COG3386 Gluconolactonase [Carb 46.6 2.5E+02 0.0055 33.3 13.0 112 377-503 152-272 (307)
393 PF10313 DUF2415: Uncharacteri 46.0 71 0.0015 27.0 5.9 34 439-475 1-34 (43)
394 PF11715 Nup160: Nucleoporin N 45.9 68 0.0015 40.6 8.9 44 440-485 216-259 (547)
395 PF12348 CLASP_N: CLASP N term 44.6 68 0.0015 35.4 7.7 149 961-1132 53-210 (228)
396 PF08728 CRT10: CRT10; InterP 43.7 1.4E+02 0.0031 39.2 11.0 102 407-523 113-245 (717)
397 PF04053 Coatomer_WDAD: Coatom 42.5 72 0.0016 39.7 8.0 79 409-497 118-207 (443)
398 KOG3630 Nuclear pore complex, 42.4 1.1E+02 0.0025 41.5 9.9 101 409-523 115-227 (1405)
399 COG1471 RPS4A Ribosomal protei 42.1 34 0.00073 38.5 4.6 35 32-67 82-116 (241)
400 PF07569 Hira: TUP1-like enhan 42.0 79 0.0017 35.5 7.6 84 1131-1223 14-108 (219)
401 PF14583 Pectate_lyase22: Olig 41.9 6.8E+02 0.015 30.8 15.7 177 332-539 35-238 (386)
402 PF01731 Arylesterase: Arylest 41.9 74 0.0016 30.7 6.3 48 1153-1217 35-83 (86)
403 PF14781 BBS2_N: Ciliary BBSom 41.5 4.5E+02 0.0097 27.7 13.4 115 407-534 9-135 (136)
404 PRK13616 lipoprotein LpqB; Pro 40.5 2E+02 0.0044 37.2 11.8 105 388-520 350-472 (591)
405 PRK04313 30S ribosomal protein 40.5 1.6E+02 0.0034 33.7 9.6 102 32-156 79-186 (237)
406 PRK13616 lipoprotein LpqB; Pro 40.1 4.6E+02 0.01 34.0 14.9 76 419-505 431-514 (591)
407 TIGR02276 beta_rpt_yvtn 40-res 39.9 79 0.0017 25.0 5.4 32 496-534 1-32 (42)
408 PLN00036 40S ribosomal protein 39.2 1.6E+02 0.0034 34.2 9.4 102 32-156 83-189 (261)
409 PF14761 HPS3_N: Hermansky-Pud 39.1 1E+02 0.0022 34.6 7.8 64 1132-1212 20-84 (215)
410 KOG3630 Nuclear pore complex, 39.0 1.7E+02 0.0038 39.8 10.7 105 385-505 153-262 (1405)
411 TIGR03075 PQQ_enz_alc_DH PQQ-d 38.9 4.5E+02 0.0098 33.5 14.5 122 409-533 70-198 (527)
412 cd08050 TAF6 TATA Binding Prot 38.1 70 0.0015 38.4 6.8 80 1050-1133 212-302 (343)
413 PTZ00223 40S ribosomal protein 37.7 1.7E+02 0.0036 34.1 9.3 94 32-140 80-178 (273)
414 PF12755 Vac14_Fab1_bd: Vacuol 36.7 60 0.0013 31.9 4.9 52 1074-1129 6-57 (97)
415 COG5167 VID27 Protein involved 35.0 1.9E+02 0.0041 36.3 9.6 60 456-524 573-632 (776)
416 PF13645 YkuD_2: L,D-transpept 34.5 85 0.0018 34.3 6.0 95 1104-1226 4-106 (176)
417 KOG2956 CLIP-associating prote 33.8 58 0.0013 40.2 5.1 83 1043-1131 397-480 (516)
418 PF10647 Gmad1: Lipoprotein Lp 33.0 1.7E+02 0.0036 33.5 8.6 69 1133-1215 71-139 (253)
419 PF02985 HEAT: HEAT repeat; I 31.7 46 0.001 25.3 2.6 24 823-846 2-25 (31)
420 TIGR02276 beta_rpt_yvtn 40-res 31.5 1.5E+02 0.0032 23.3 5.7 28 409-436 5-32 (42)
421 PF14655 RAB3GAP2_N: Rab3 GTPa 30.9 4.1E+02 0.0088 33.0 11.8 96 379-483 299-407 (415)
422 PF12234 Rav1p_C: RAVE protein 30.5 4E+02 0.0087 34.8 12.0 73 385-472 70-154 (631)
423 PF12768 Rax2: Cortical protei 29.8 6.1E+02 0.013 29.8 12.5 96 418-525 16-124 (281)
424 PF04841 Vps16_N: Vps16, N-ter 29.5 4.4E+02 0.0095 32.5 11.9 48 419-474 62-109 (410)
425 PF14870 PSII_BNR: Photosynthe 29.5 1E+03 0.022 28.3 15.0 105 386-506 143-252 (302)
426 PF12717 Cnd1: non-SMC mitotic 28.8 1.5E+02 0.0034 31.8 7.0 99 936-1062 5-108 (178)
427 KOG1059 Vesicle coat complex A 28.1 1.6E+02 0.0035 38.3 7.7 143 951-1130 134-281 (877)
428 PF14761 HPS3_N: Hermansky-Pud 28.0 5.3E+02 0.011 29.2 11.0 102 409-526 29-165 (215)
429 PF03178 CPSF_A: CPSF A subuni 28.0 1E+03 0.022 27.8 19.2 113 325-474 87-202 (321)
430 KOG4460 Nuclear pore complex, 27.5 3.9E+02 0.0084 33.9 10.5 76 440-529 105-203 (741)
431 COG3490 Uncharacterized protei 26.9 1.1E+03 0.024 28.0 13.3 74 420-505 93-180 (366)
432 PHA02713 hypothetical protein; 26.8 2E+02 0.0043 36.9 8.6 75 456-538 464-547 (557)
433 PF03022 MRJP: Major royal jel 26.1 97 0.0021 36.2 5.2 21 1153-1173 87-107 (287)
434 PF14583 Pectate_lyase22: Olig 26.0 5E+02 0.011 31.9 11.1 149 373-533 16-185 (386)
435 TIGR02604 Piru_Ver_Nterm putat 24.1 6.5E+02 0.014 30.3 11.9 59 438-503 123-200 (367)
436 KOG2109 WD40 repeat protein [G 22.4 86 0.0019 40.2 4.0 52 1153-1217 294-345 (788)
437 PRK10115 protease 2; Provision 22.3 1.9E+03 0.041 29.0 17.9 93 418-523 153-254 (686)
438 KOG2171 Karyopherin (importin) 21.6 3E+02 0.0066 37.7 8.8 144 962-1124 37-188 (1075)
439 TIGR03630 arch_S17P archaeal r 21.4 93 0.002 31.0 3.2 31 23-54 18-48 (102)
440 COG3204 Uncharacterized protei 20.6 1.2E+03 0.026 27.8 12.2 109 384-507 82-201 (316)
441 KOG3522 Predicted guanine nucl 20.5 1.4E+02 0.0031 39.4 5.4 138 345-525 550-698 (925)
442 KOG4305 RhoGEF GTPase [Signal 20.1 1.2E+02 0.0027 41.1 4.9 54 1140-1200 964-1019(1029)
No 1
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.2e-27 Score=269.96 Aligned_cols=278 Identities=17% Similarity=0.215 Sum_probs=215.8
Q ss_pred CCCCceeEEEEEeeeeeEEEEeeeeccCCCccccceEEEEEecccCCCCCceeEEeecCCee--eeeeec---c-eeeeC
Q 000743 213 PSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSF--VDWVNN---S-TFLDE 286 (1313)
Q Consensus 213 ~~~~~~~i~~iq~~~~lv~i~svc~d~e~~l~W~p~vtVWsl~~~~~~~~~q~~~~g~~~~~--~dWiss---~-l~~~~ 286 (1313)
+.+....+.++-|......+.+.+ |...+++|....+ ...+++.|+...+ ++|-.. . +....
T Consensus 171 Q~gd~rPis~~~fS~ds~~laT~s--------wsG~~kvW~~~~~----~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s 238 (459)
T KOG0272|consen 171 QVGDTRPISGCSFSRDSKHLATGS--------WSGLVKVWSVPQC----NLLQTLRGHTSRVGAAVFHPVDSDLNLATAS 238 (459)
T ss_pred hccCCCcceeeEeecCCCeEEEee--------cCCceeEeecCCc----ceeEEEeccccceeeEEEccCCCccceeeec
Confidence 334444566666666544444443 5568999977544 2345677766544 344211 1 22222
Q ss_pred CCC-eeeeeeccccccccccccccccCCCCCCCceecccCCceEEEEeeeecccccCCE--EEEEEcCCcEEEEEeeccc
Q 000743 287 NEG-SCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYA--IVYGFFSGEIEVIQFDLFE 363 (1313)
Q Consensus 287 ~dG-i~Iwk~~~ss~~~~i~~l~~~~~~~~~~~~~~~~~H~~~Vts~l~is~~~fsP~~--LvsGs~DGsI~I~~wdll~ 363 (1313)
.|| +++|++..+ .+++.+.+|...|.. +.|+|++ |.+++.|.+=++ |
T Consensus 239 ~Dgtvklw~~~~e------------------~~l~~l~gH~~RVs~------VafHPsG~~L~TasfD~tWRl--W---- 288 (459)
T KOG0272|consen 239 ADGTVKLWKLSQE------------------TPLQDLEGHLARVSR------VAFHPSGKFLGTASFDSTWRL--W---- 288 (459)
T ss_pred cCCceeeeccCCC------------------cchhhhhcchhhhee------eeecCCCceeeecccccchhh--c----
Confidence 233 344544322 358899999999999 6777774 899999988777 4
Q ss_pred cCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEE
Q 000743 364 RHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQ 443 (1313)
Q Consensus 364 ~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~s 443 (1313)
|+.++.......||...|.+++|+ +|| .+++|||.|..-||||+++|.++..+.+|..+|.+
T Consensus 289 ---------D~~tk~ElL~QEGHs~~v~~iaf~-----~DG----SL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~ 350 (459)
T KOG0272|consen 289 ---------DLETKSELLLQEGHSKGVFSIAFQ-----PDG----SLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILS 350 (459)
T ss_pred ---------ccccchhhHhhcccccccceeEec-----CCC----ceeeccCccchhheeecccCcEEEEecccccceee
Confidence 556777777889999999999999 577 99999999999999999999999999999999999
Q ss_pred EEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEEcC-CCCEEEEEecCCCCCCCCCCEEEEEE
Q 000743 444 IILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDC-PRGYIACLCRDHSRTSDAVDVLFIWD 522 (1313)
Q Consensus 444 V~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafsP-dg~~Latgs~DlsGssD~DgtIrVWD 522 (1313)
|.|+|+ |..++|||.|++++|||++..++++++++|.+-|+.|+|+| .|.+|+|++.| ++++||.
T Consensus 351 V~fsPN------Gy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD--------~t~kiWs 416 (459)
T KOG0272|consen 351 VAFSPN------GYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYD--------NTVKIWS 416 (459)
T ss_pred EeECCC------ceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccC--------cceeeec
Confidence 999999 79999999999999999999999999999999999999999 77889987766 9999999
Q ss_pred CCCCcEEEEEeCCCCceeEEeeecccccceeecccccCCcccccCcccccCCCcEEEEe
Q 000743 523 VKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 581 (1313)
Q Consensus 523 lrTG~lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wd 581 (1313)
.+++.+++++.||.+.|+++..... +++. ++.+-|+|+|+|.
T Consensus 417 ~~~~~~~ksLaGHe~kV~s~Dis~d------------~~~i-----~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 417 TRTWSPLKSLAGHEGKVISLDISPD------------SQAI-----ATSSFDRTIKLWR 458 (459)
T ss_pred CCCcccchhhcCCccceEEEEeccC------------CceE-----EEeccCceeeecc
Confidence 9999999999999999977654321 1222 3334499999995
No 2
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.94 E-value=4.4e-26 Score=273.56 Aligned_cols=210 Identities=17% Similarity=0.270 Sum_probs=184.8
Q ss_pred CCCceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEE
Q 000743 316 GDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAA 395 (1313)
Q Consensus 316 ~~~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLaf 395 (1313)
.....++.+|.++|..+.+.|+..| |+++++|+++|+ |. ..+..+...++||..+|+++.|
T Consensus 441 ~~~~~~L~GH~GPVyg~sFsPd~rf----LlScSED~svRL--Ws-------------l~t~s~~V~y~GH~~PVwdV~F 501 (707)
T KOG0263|consen 441 SGTSRTLYGHSGPVYGCSFSPDRRF----LLSCSEDSSVRL--WS-------------LDTWSCLVIYKGHLAPVWDVQF 501 (707)
T ss_pred CceeEEeecCCCceeeeeecccccc----eeeccCCcceee--ee-------------cccceeEEEecCCCcceeeEEe
Confidence 3456679999999999555555443 999999999999 54 3555788999999999999999
Q ss_pred eccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCC
Q 000743 396 HRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET 475 (1313)
Q Consensus 396 sP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t 475 (1313)
+| .| -+++|||.|+|.++|......+++.|.+|-+.|.|+.|||+ .+++++||.|++|++||+.+
T Consensus 502 ~P-----~G----yYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPN------s~Y~aTGSsD~tVRlWDv~~ 566 (707)
T KOG0263|consen 502 AP-----RG----YYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPN------SNYVATGSSDRTVRLWDVST 566 (707)
T ss_pred cC-----Cc----eEEEecCCCceeeeeecccCCchhhhcccccccceEEECCc------ccccccCCCCceEEEEEcCC
Confidence 96 45 89999999999999999999999999999999999999999 69999999999999999999
Q ss_pred CcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEeeecccccceeec
Q 000743 476 LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISG 555 (1313)
Q Consensus 476 ~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~~~s~~ivSG 555 (1313)
|..++.|.||.++|.+++|+|+|+||++|+.| +.|.+||+.+|.++..+.||++.+.++.|+. +|
T Consensus 567 G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed--------~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~-------dg 631 (707)
T KOG0263|consen 567 GNSVRIFTGHKGPVTALAFSPCGRYLASGDED--------GLIKIWDLANGSLVKQLKGHTGTIYSLSFSR-------DG 631 (707)
T ss_pred CcEEEEecCCCCceEEEEEcCCCceEeecccC--------CcEEEEEcCCCcchhhhhcccCceeEEEEec-------CC
Confidence 99999999999999999999999999998776 9999999999999999999999998888865 23
Q ss_pred ccccCCcccccCcccccCCCcEEEEeCCc
Q 000743 556 SVLNGNTSVSSLLLPIHEDGTFRQSQIQN 584 (1313)
Q Consensus 556 S~l~g~~l~S~~lvs~s~DgtIr~Wdl~~ 584 (1313)
. .+++++ .|.+|++||+..
T Consensus 632 ~-----vLasgg-----~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 632 N-----VLASGG-----ADNSVRLWDLTK 650 (707)
T ss_pred C-----EEEecC-----CCCeEEEEEchh
Confidence 2 333333 499999999864
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.5e-25 Score=250.03 Aligned_cols=326 Identities=17% Similarity=0.211 Sum_probs=227.9
Q ss_pred ecCCCeEEEEEeccccccccccccccCcccCCCCCceeEEEEEeeeeeEEEEeeeeccCCCccccceEEEEEecccCCCC
Q 000743 182 DNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGP 261 (1313)
Q Consensus 182 ~~~~~~~vy~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~iq~~~~lv~i~svc~d~e~~l~W~p~vtVWsl~~~~~~~ 261 (1313)
.+.++..+-.+.-...+|+..|. ..+.+..++....|--+||....-++.+..-|. ++++|++.....
T Consensus 82 ~v~te~~l~lvyqpqavfrvrpv--trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~--------TvR~WD~~TeTp-- 149 (480)
T KOG0271|consen 82 NVSTEDVLTLVYQPQAVFRVRPV--TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDT--------TVRLWDLDTETP-- 149 (480)
T ss_pred ccchhheeeEEeccchhhccccc--ceeccccCCCCCcEEEEEecCCCceEEecCCCc--------eEEeeccCCCCc--
Confidence 34444443333333344443333 233444455555677777777666666555544 789997753321
Q ss_pred CceeEEeecCCeeeeeeecceeeeCCCCeeeeeeccccccccccccccccCCCCCCCceecccCCceEEEEeeeeccccc
Q 000743 262 GKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYA 341 (1313)
Q Consensus 262 ~~q~~~~g~~~~~~dWiss~l~~~~~dGi~Iwk~~~ss~~~~i~~l~~~~~~~~~~~~~~~~~H~~~Vts~l~is~~~fs 341 (1313)
-..+-++. .|+.. ....|||..| ........+...+ .+........|.+|...|+++.+-+-..-.
T Consensus 150 --~~t~KgH~----~WVlc--vawsPDgk~i---ASG~~dg~I~lwd---pktg~~~g~~l~gH~K~It~Lawep~hl~p 215 (480)
T KOG0271|consen 150 --LFTCKGHK----NWVLC--VAWSPDGKKI---ASGSKDGSIRLWD---PKTGQQIGRALRGHKKWITALAWEPLHLVP 215 (480)
T ss_pred --ceeecCCc----cEEEE--EEECCCcchh---hccccCCeEEEec---CCCCCcccccccCcccceeEEeecccccCC
Confidence 11223332 35544 2334454321 0011111121111 111112346799999999996555533322
Q ss_pred CC-EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcE
Q 000743 342 PY-AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSI 420 (1313)
Q Consensus 342 P~-~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtI 420 (1313)
|. ++++++.||+++| || +..++++..+.||+.+|+|+.|- .+.+++|||.|++|
T Consensus 216 ~~r~las~skDg~vrI--Wd-------------~~~~~~~~~lsgHT~~VTCvrwG----------G~gliySgS~DrtI 270 (480)
T KOG0271|consen 216 PCRRLASSSKDGSVRI--WD-------------TKLGTCVRTLSGHTASVTCVRWG----------GEGLIYSGSQDRTI 270 (480)
T ss_pred CccceecccCCCCEEE--EE-------------ccCceEEEEeccCccceEEEEEc----------CCceEEecCCCceE
Confidence 22 4899999999999 64 45668999999999999999995 34699999999999
Q ss_pred EEEECCCCceEEEEeccCCCEEEEEECCCCC-----CC-------------------------CCCCEEEEEeCCCeEEE
Q 000743 421 RIWDLGSGNLITVMHHHVAPVRQIILSPPQT-----EH-------------------------PWSDCFLSVGEDFSVAL 470 (1313)
Q Consensus 421 rVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~-----~~-------------------------~~g~~LaSgS~DgtV~L 470 (1313)
++|+...|.+.+.+++|..+|+.++.+-+.. -. ..+..++|||+|.++.+
T Consensus 271 kvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlfl 350 (480)
T KOG0271|consen 271 KVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFL 350 (480)
T ss_pred EEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEE
Confidence 9999999999999999999999999884311 00 11346999999999999
Q ss_pred EECCC-CcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEeeecccc
Q 000743 471 ASLET-LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGIS 549 (1313)
Q Consensus 471 WDL~t-~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~~~s 549 (1313)
|+... .+++..+.||..-|+.+.|+||++|+++++.| ++|++||.++|+.+.+|.||-+.|..+.|..
T Consensus 351 W~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFD--------kSVkLW~g~tGk~lasfRGHv~~VYqvawsa--- 419 (480)
T KOG0271|consen 351 WNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFD--------KSVKLWDGRTGKFLASFRGHVAAVYQVAWSA--- 419 (480)
T ss_pred ecccccccchhhhhchhhheeeEEECCCccEEEEeecc--------cceeeeeCCCcchhhhhhhccceeEEEEecc---
Confidence 99764 45888999999999999999999999998887 9999999999999999999999998887753
Q ss_pred cceeecccccCCcccccCcccccCCCcEEEEeCC
Q 000743 550 MNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 583 (1313)
Q Consensus 550 ~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~ 583 (1313)
.+.++++.|.|.|+|+|+++
T Consensus 420 --------------DsRLlVS~SkDsTLKvw~V~ 439 (480)
T KOG0271|consen 420 --------------DSRLLVSGSKDSTLKVWDVR 439 (480)
T ss_pred --------------CccEEEEcCCCceEEEEEee
Confidence 13356666779999999987
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=5.2e-25 Score=245.73 Aligned_cols=338 Identities=21% Similarity=0.209 Sum_probs=238.8
Q ss_pred EeceeEEEeccCCceeeEEeecccceeecCCCcceeEEeeEEEeeecccccccccccccccceeEEEEecCCCeEEEEEe
Q 000743 114 LKDHCIFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAIS 193 (1313)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~vw~~~~~~~vy~~~ 193 (1313)
.|.|=++||=++=.=-| +..+|+.-.++..+ |++|+- +-++++||..+..-
T Consensus 99 frvrpvtrCssS~~GH~-----e~Vl~~~fsp~g~~------l~tGsG-------------D~TvR~WD~~TeTp----- 149 (480)
T KOG0271|consen 99 FRVRPVTRCSSSIAGHG-----EAVLSVQFSPTGSR------LVTGSG-------------DTTVRLWDLDTETP----- 149 (480)
T ss_pred hcccccceeccccCCCC-----CcEEEEEecCCCce------EEecCC-------------CceEEeeccCCCCc-----
Confidence 35556666654322111 34567665554443 445555 55899999999843
Q ss_pred ccccccccccccccCcccCCCCCceeEEEEEeeeeeEEEEeeeeccCCCccccceEEEEEecccCCCCCceeEEeecCCe
Q 000743 194 YMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFS 273 (1313)
Q Consensus 194 ~~~~~~~~~~~~~~p~~~~~~~~~~~i~~iq~~~~lv~i~svc~d~e~~l~W~p~vtVWsl~~~~~~~~~q~~~~g~~~~ 273 (1313)
.|++.-| +-.+.-+.+....-.+.+.|.|. .|.+|+...... -++ .+-|+.
T Consensus 150 ----~~t~KgH------------~~WVlcvawsPDgk~iASG~~dg--------~I~lwdpktg~~-~g~--~l~gH~-- 200 (480)
T KOG0271|consen 150 ----LFTCKGH------------KNWVLCVAWSPDGKKIASGSKDG--------SIRLWDPKTGQQ-IGR--ALRGHK-- 200 (480)
T ss_pred ----ceeecCC------------ccEEEEEEECCCcchhhccccCC--------eEEEecCCCCCc-ccc--cccCcc--
Confidence 3333333 33566666777667777777765 567774321110 011 112221
Q ss_pred eeeeeecc-------------eeeeCCC-CeeeeeeccccccccccccccccCCCCCCCceecccCCceEEEEeeeeccc
Q 000743 274 FVDWVNNS-------------TFLDENE-GSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESF 339 (1313)
Q Consensus 274 ~~dWiss~-------------l~~~~~d-Gi~Iwk~~~ss~~~~i~~l~~~~~~~~~~~~~~~~~H~~~Vts~l~is~~~ 339 (1313)
.||... +.....| .++||++..- .++..+.+|..+|+| ..
T Consensus 201 --K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~------------------~~~~~lsgHT~~VTC------vr 254 (480)
T KOG0271|consen 201 --KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG------------------TCVRTLSGHTASVTC------VR 254 (480)
T ss_pred --cceeEEeecccccCCCccceecccCCCCEEEEEccCc------------------eEEEEeccCccceEE------EE
Confidence 232221 1222223 2455655432 357788999999999 55
Q ss_pred ccCC-EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEecccc------CCCCCc------
Q 000743 340 YAPY-AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVG------TAKGWS------ 406 (1313)
Q Consensus 340 fsP~-~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s------~pDGr~------ 406 (1313)
|... .+++|+.|++|++ |+ ...|++.++|+||..+|+.++.+-++. .+-|++
T Consensus 255 wGG~gliySgS~DrtIkv--w~-------------a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se 319 (480)
T KOG0271|consen 255 WGGEGLIYSGSQDRTIKV--WR-------------ALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSE 319 (480)
T ss_pred EcCCceEEecCCCceEEE--EE-------------ccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHH
Confidence 5433 4899999999999 53 355788999999999999999873321 111211
Q ss_pred ---------------cCcEEEEEeCCCcEEEEECC-CCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEE
Q 000743 407 ---------------FNEVLVSGSMDCSIRIWDLG-SGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVAL 470 (1313)
Q Consensus 407 ---------------~~~~LaSGS~DgtIrVWDl~-tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~L 470 (1313)
..+.++|||+|+++.+|+.. +.+++.++.+|..-|+.+.|+|| +.+|+|+|.|++|+|
T Consensus 320 ~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd------~r~IASaSFDkSVkL 393 (480)
T KOG0271|consen 320 EQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPD------GRYIASASFDKSVKL 393 (480)
T ss_pred HHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCC------ccEEEEeecccceee
Confidence 12569999999999999976 45599999999999999999999 799999999999999
Q ss_pred EECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEeeeccccc
Q 000743 471 ASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISM 550 (1313)
Q Consensus 471 WDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~~~s~ 550 (1313)
||-++|+.+.+|+||-+.|+.++|+.|.+.|++|+.| .|++|||+++.++...+.||.++|..+.|.+
T Consensus 394 W~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkD--------sTLKvw~V~tkKl~~DLpGh~DEVf~vDwsp---- 461 (480)
T KOG0271|consen 394 WDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKD--------STLKVWDVRTKKLKQDLPGHADEVFAVDWSP---- 461 (480)
T ss_pred eeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCC--------ceEEEEEeeeeeecccCCCCCceEEEEEecC----
Confidence 9999999999999999999999999999999998877 9999999999999999999999997766654
Q ss_pred ceeecccccCCcccccCcccccCCCcEEEEe
Q 000743 551 NSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 581 (1313)
Q Consensus 551 ~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wd 581 (1313)
+|. -.+++. .|+-+|+|.
T Consensus 462 ---DG~-----rV~sgg-----kdkv~~lw~ 479 (480)
T KOG0271|consen 462 ---DGQ-----RVASGG-----KDKVLRLWR 479 (480)
T ss_pred ---CCc-----eeecCC-----CceEEEeec
Confidence 221 222222 388899994
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=7.3e-26 Score=255.67 Aligned_cols=211 Identities=17% Similarity=0.192 Sum_probs=183.0
Q ss_pred CCceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEe
Q 000743 317 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAH 396 (1313)
Q Consensus 317 ~~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafs 396 (1313)
...++|.+|...|.+..+-|.. +...+++++.||++++ |++ .+..++..|.||..+|..++||
T Consensus 208 ~~~~~l~gH~~~v~~~~fhP~~--~~~~lat~s~Dgtvkl--w~~-------------~~e~~l~~l~gH~~RVs~VafH 270 (459)
T KOG0272|consen 208 NLLQTLRGHTSRVGAAVFHPVD--SDLNLATASADGTVKL--WKL-------------SQETPLQDLEGHLARVSRVAFH 270 (459)
T ss_pred ceeEEEeccccceeeEEEccCC--CccceeeeccCCceee--ecc-------------CCCcchhhhhcchhhheeeeec
Confidence 3578999999999994444332 0115999999999999 432 3346789999999999999999
Q ss_pred ccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCC
Q 000743 397 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL 476 (1313)
Q Consensus 397 P~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~ 476 (1313)
| +| ++|+|+|.|.+-|+||+++++.+....||...|.+++|+|+ |.+++|||.|..-+|||+|++
T Consensus 271 P-----sG----~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~D------GSL~~tGGlD~~~RvWDlRtg 335 (459)
T KOG0272|consen 271 P-----SG----KFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPD------GSLAATGGLDSLGRVWDLRTG 335 (459)
T ss_pred C-----CC----ceeeecccccchhhcccccchhhHhhcccccccceeEecCC------CceeeccCccchhheeecccC
Confidence 4 67 99999999999999999999999999999999999999999 899999999999999999999
Q ss_pred cEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEeeecccccceeecc
Q 000743 477 RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGS 556 (1313)
Q Consensus 477 ~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS 556 (1313)
+++..+.||..+|..|.|+|+|-.|+||+.| ++++|||+|...++.++.+|++.|..+.|.+...
T Consensus 336 r~im~L~gH~k~I~~V~fsPNGy~lATgs~D--------nt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g------- 400 (459)
T KOG0272|consen 336 RCIMFLAGHIKEILSVAFSPNGYHLATGSSD--------NTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEG------- 400 (459)
T ss_pred cEEEEecccccceeeEeECCCceEEeecCCC--------CcEEEeeecccccceecccccchhhheEecccCC-------
Confidence 9999999999999999999999999997766 9999999999999999999999998888865222
Q ss_pred cccCCcccccCcccccCCCcEEEEeCC
Q 000743 557 VLNGNTSVSSLLLPIHEDGTFRQSQIQ 583 (1313)
Q Consensus 557 ~l~g~~l~S~~lvs~s~DgtIr~Wdl~ 583 (1313)
.++++.++ |+|+|+|.-.
T Consensus 401 ----~fL~Tasy-----D~t~kiWs~~ 418 (459)
T KOG0272|consen 401 ----YFLVTASY-----DNTVKIWSTR 418 (459)
T ss_pred ----eEEEEccc-----CcceeeecCC
Confidence 34444444 9999999865
No 6
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.92 E-value=3.4e-23 Score=225.63 Aligned_cols=205 Identities=20% Similarity=0.299 Sum_probs=179.2
Q ss_pred CceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEec
Q 000743 318 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 397 (1313)
Q Consensus 318 ~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP 397 (1313)
....+.+|.+-+.|+.|+++.. |++|+.|.+..+ | |+++++....|.||.+.|.+|.++|
T Consensus 137 v~r~l~gHtgylScC~f~dD~~-----ilT~SGD~TCal--W-------------Die~g~~~~~f~GH~gDV~slsl~p 196 (343)
T KOG0286|consen 137 VSRELAGHTGYLSCCRFLDDNH-----ILTGSGDMTCAL--W-------------DIETGQQTQVFHGHTGDVMSLSLSP 196 (343)
T ss_pred eeeeecCccceeEEEEEcCCCc-----eEecCCCceEEE--E-------------EcccceEEEEecCCcccEEEEecCC
Confidence 4567899999999998888766 999999999988 5 5688999999999999999999986
Q ss_pred cccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCc
Q 000743 398 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR 477 (1313)
Q Consensus 398 ~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~ 477 (1313)
.++ +.++||+.|++.++||++.+.+.++|.+|.+.|++|+|+|+ |.-|++||+|+++++||+|..+
T Consensus 197 ----~~~----ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~------G~afatGSDD~tcRlyDlRaD~ 262 (343)
T KOG0286|consen 197 ----SDG----NTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPS------GDAFATGSDDATCRLYDLRADQ 262 (343)
T ss_pred ----CCC----CeEEecccccceeeeeccCcceeEeecccccccceEEEccC------CCeeeecCCCceeEEEeecCCc
Confidence 255 89999999999999999999999999999999999999999 7899999999999999999999
Q ss_pred EEEEecCC--CCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEeeecccccceeec
Q 000743 478 VERMFPGH--PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISG 555 (1313)
Q Consensus 478 ~l~~l~gH--~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~~~s~~ivSG 555 (1313)
.+..+... ..+|++++|+-.|++|++|..| .++.+||.-.++.+..|.||.+.|.++..++ +|
T Consensus 263 ~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d--------~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~-------DG 327 (343)
T KOG0286|consen 263 ELAVYSHDSIICGITSVAFSKSGRLLFAGYDD--------FTCNVWDTLKGERVGVLAGHENRVSCLGVSP-------DG 327 (343)
T ss_pred EEeeeccCcccCCceeEEEcccccEEEeeecC--------CceeEeeccccceEEEeeccCCeeEEEEECC-------CC
Confidence 98888733 2378999999999999987665 9999999999999999999999996665543 22
Q ss_pred ccccCCcccccCcccccCCCcEEEEe
Q 000743 556 SVLNGNTSVSSLLLPIHEDGTFRQSQ 581 (1313)
Q Consensus 556 S~l~g~~l~S~~lvs~s~DgtIr~Wd 581 (1313)
..+.+++. |.++|+|.
T Consensus 328 -----~av~TgSW-----Ds~lriW~ 343 (343)
T KOG0286|consen 328 -----MAVATGSW-----DSTLRIWA 343 (343)
T ss_pred -----cEEEecch-----hHheeecC
Confidence 23344444 99999994
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.91 E-value=3.6e-23 Score=224.48 Aligned_cols=213 Identities=16% Similarity=0.191 Sum_probs=179.3
Q ss_pred CceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEec
Q 000743 318 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 397 (1313)
Q Consensus 318 ~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP 397 (1313)
...++.+|++.|+.+..... .|+.++.++.|..+.+ |++... |.+.|.+++.|.||...|..+..+
T Consensus 7 l~~tl~gh~d~Vt~la~~~~---~~~~l~sasrDk~ii~--W~L~~d--------d~~~G~~~r~~~GHsH~v~dv~~s- 72 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIK---NSDILVSASRDKTIIV--WKLTSD--------DIKYGVPVRRLTGHSHFVSDVVLS- 72 (315)
T ss_pred eeeeecCCCceEEEEEeecC---CCceEEEcccceEEEE--EEeccC--------ccccCceeeeeeccceEecceEEc-
Confidence 35678999999999544433 4567999999999999 664332 667889999999999999999998
Q ss_pred cccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCc
Q 000743 398 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR 477 (1313)
Q Consensus 398 ~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~ 477 (1313)
+|| ++.+|+|.|+++|+||+.+|+..+.|.+|...|.+++|+|+ ...|+|||.|+++++||+. +.
T Consensus 73 ----~dg----~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~d------n~qivSGSrDkTiklwnt~-g~ 137 (315)
T KOG0279|consen 73 ----SDG----NFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTD------NRQIVSGSRDKTIKLWNTL-GV 137 (315)
T ss_pred ----cCC----ceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCC------CceeecCCCcceeeeeeec-cc
Confidence 577 99999999999999999999999999999999999999999 5899999999999999986 56
Q ss_pred EEEEecCC--CCCcEEEEEcCC--CCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEeeeccccccee
Q 000743 478 VERMFPGH--PNYPAKVVWDCP--RGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSI 553 (1313)
Q Consensus 478 ~l~~l~gH--~~~V~sVafsPd--g~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~~~s~~iv 553 (1313)
|..++..+ .+.|.|+.|+|+ ..+|++++.| ++|++||+++-++...+.||+..+..+.+++
T Consensus 138 ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~D--------ktvKvWnl~~~~l~~~~~gh~~~v~t~~vSp------- 202 (315)
T KOG0279|consen 138 CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWD--------KTVKVWNLRNCQLRTTFIGHSGYVNTVTVSP------- 202 (315)
T ss_pred EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCC--------ceEEEEccCCcchhhccccccccEEEEEECC-------
Confidence 66666554 678999999998 6788886665 9999999999999999999999998776654
Q ss_pred ecccccCCcccccCcccccCCCcEEEEeCCc
Q 000743 554 SGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 584 (1313)
Q Consensus 554 SGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~~ 584 (1313)
+|+ ..+++ .+||.+.+||++.
T Consensus 203 DGs-----lcasG-----gkdg~~~LwdL~~ 223 (315)
T KOG0279|consen 203 DGS-----LCASG-----GKDGEAMLWDLNE 223 (315)
T ss_pred CCC-----EEecC-----CCCceEEEEEccC
Confidence 343 22222 3499999999974
No 8
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.91 E-value=8.6e-24 Score=254.04 Aligned_cols=222 Identities=23% Similarity=0.326 Sum_probs=179.6
Q ss_pred ceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccc--c---C---CCC--------CCccccCCceEEEE
Q 000743 319 RDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFE--R---H---NSP--------GASLKVNSHVSRQY 382 (1313)
Q Consensus 319 ~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~--~---~---~~~--------~~~wdv~tg~~~~~ 382 (1313)
..++..-...|+|.-+.++.. .+++|..|..|++|....-. . . ... ...-|-.+....++
T Consensus 371 ~YT~~nt~~~v~ca~fSddss----mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~ 446 (707)
T KOG0263|consen 371 MYTFHNTYQGVTCAEFSDDSS----MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRT 446 (707)
T ss_pred EEEEEEcCCcceeEeecCCcc----hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEE
Confidence 344445556777743333333 59999999999995543100 0 0 011 01123334455677
Q ss_pred EecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEE
Q 000743 383 FLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSV 462 (1313)
Q Consensus 383 L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSg 462 (1313)
|.||.++|....|+| +.++|+|+|.|++||+|.+.+..++..++||..||+.+.|+|. |.+|+|+
T Consensus 447 L~GH~GPVyg~sFsP---------d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~------GyYFata 511 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFSP---------DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPR------GYYFATA 511 (707)
T ss_pred eecCCCceeeeeecc---------cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCC------ceEEEec
Confidence 999999999999996 3489999999999999999999999999999999999999998 8999999
Q ss_pred eCCCeEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEE
Q 000743 463 GEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFD 542 (1313)
Q Consensus 463 S~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~ 542 (1313)
|.|++.++|.....++++.+.||.+.|.|+.|||+..|+++|+.| .+||+||+.+|..+|.+.||.+.|+.+
T Consensus 512 s~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD--------~tVRlWDv~~G~~VRiF~GH~~~V~al 583 (707)
T KOG0263|consen 512 SHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSD--------RTVRLWDVSTGNSVRIFTGHKGPVTAL 583 (707)
T ss_pred CCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCC--------ceEEEEEcCCCcEEEEecCCCCceEEE
Confidence 999999999999999999999999999999999999999997665 999999999999999999999999999
Q ss_pred eeecccccceeecccccCCcccccCcccccCCCcEEEEeCCc
Q 000743 543 HFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 584 (1313)
Q Consensus 543 ~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~~ 584 (1313)
.||+ . |.+++++. .|+.|++||+..
T Consensus 584 ~~Sp-~-----------Gr~LaSg~-----ed~~I~iWDl~~ 608 (707)
T KOG0263|consen 584 AFSP-C-----------GRYLASGD-----EDGLIKIWDLAN 608 (707)
T ss_pred EEcC-C-----------CceEeecc-----cCCcEEEEEcCC
Confidence 8876 1 22333332 499999999974
No 9
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.91 E-value=2.3e-23 Score=227.70 Aligned_cols=243 Identities=17% Similarity=0.165 Sum_probs=189.1
Q ss_pred CCceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEe
Q 000743 317 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAH 396 (1313)
Q Consensus 317 ~~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafs 396 (1313)
.+...+.+|++.|+.+.+.|+.. .+++|+.|..|.+ |+.. ...+....++||+++|..+.|.
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs----~~aSgG~Dr~I~L--Wnv~------------gdceN~~~lkgHsgAVM~l~~~ 99 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGS----CFASGGSDRAIVL--WNVY------------GDCENFWVLKGHSGAVMELHGM 99 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCC----eEeecCCcceEEE--Eecc------------ccccceeeeccccceeEeeeec
Confidence 35667889999999955555444 4999999999999 6521 2335677888999999999998
Q ss_pred ccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCC
Q 000743 397 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL 476 (1313)
Q Consensus 397 P~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~ 476 (1313)
+|| +.++|+|.|++|+.||.++|++++++++|.+-|+++.-..- --..++|++.|++++|||+|+.
T Consensus 100 -----~d~----s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rr-----g~~lv~SgsdD~t~kl~D~R~k 165 (338)
T KOG0265|consen 100 -----RDG----SHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRR-----GPQLVCSGSDDGTLKLWDIRKK 165 (338)
T ss_pred -----cCC----CEEEEecCCceEEEEecccceeeehhccccceeeecCcccc-----CCeEEEecCCCceEEEEeeccc
Confidence 566 89999999999999999999999999999999999883322 2368899999999999999999
Q ss_pred cEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEeeecccccceeecc
Q 000743 477 RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGS 556 (1313)
Q Consensus 477 ~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS 556 (1313)
.+++++... -.++++.|..++..+++|+-| +.|++||++.++...++.||.+.|+.+....
T Consensus 166 ~~~~t~~~k-yqltAv~f~d~s~qv~sggId--------n~ikvWd~r~~d~~~~lsGh~DtIt~lsls~---------- 226 (338)
T KOG0265|consen 166 EAIKTFENK-YQLTAVGFKDTSDQVISGGID--------NDIKVWDLRKNDGLYTLSGHADTITGLSLSR---------- 226 (338)
T ss_pred chhhccccc-eeEEEEEecccccceeecccc--------CceeeeccccCcceEEeecccCceeeEEecc----------
Confidence 999888644 378999999999999998777 9999999999999999999999997763322
Q ss_pred cccCCcccccCcccccCCCcEEEEeCCcccccccccCCCCCCccccccCCCCCCCCCCcccccccccceeecCCCCcee
Q 000743 557 VLNGNTSVSSLLLPIHEDGTFRQSQIQNDERGVAFSTISEPSASHVRKGNSGKPSLNTRIGLQRKKQTIKCSCPYPGIA 635 (1313)
Q Consensus 557 ~l~g~~l~S~~lvs~s~DgtIr~Wdl~~~~~~~~~~~~~~p~~~~v~~g~~~k~~~~s~~~~q~~~~~ik~s~~~~~~h 635 (1313)
.|.++.++++ |.++|+|+++... +. ..+.+++..+...+. +..+||+|++.+..
T Consensus 227 --~gs~llsnsM-----d~tvrvwd~rp~~-------------p~---~R~v~if~g~~hnfe--knlL~cswsp~~~~ 280 (338)
T KOG0265|consen 227 --YGSFLLSNSM-----DNTVRVWDVRPFA-------------PS---QRCVKIFQGHIHNFE--KNLLKCSWSPNGTK 280 (338)
T ss_pred --CCCccccccc-----cceEEEEEecccC-------------CC---CceEEEeecchhhhh--hhcceeeccCCCCc
Confidence 2335555544 9999999997322 11 222333333333333 34789999875443
No 10
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.91 E-value=2.1e-22 Score=218.53 Aligned_cols=257 Identities=19% Similarity=0.247 Sum_probs=194.6
Q ss_pred CCCCceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEE
Q 000743 315 AGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLA 394 (1313)
Q Consensus 315 ~~~~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLa 394 (1313)
.+.++..|.||...|+.....++..| .++|+.|+.+++ || ..++++.+.|.||...|.+++
T Consensus 52 ~G~~~r~~~GHsH~v~dv~~s~dg~~----alS~swD~~lrl--WD-------------l~~g~~t~~f~GH~~dVlsva 112 (315)
T KOG0279|consen 52 YGVPVRRLTGHSHFVSDVVLSSDGNF----ALSASWDGTLRL--WD-------------LATGESTRRFVGHTKDVLSVA 112 (315)
T ss_pred cCceeeeeeccceEecceEEccCCce----EEeccccceEEE--EE-------------ecCCcEEEEEEecCCceEEEE
Confidence 34568889999999999877777774 889999999999 64 467789999999999999999
Q ss_pred EeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEecc--CCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEE
Q 000743 395 AHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHH--VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALAS 472 (1313)
Q Consensus 395 fsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH--~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWD 472 (1313)
|+| | .+.++|||.|+||++|++. |.|..++..+ .++|.|+.|+|+.. ..+|+++|.|++|++||
T Consensus 113 ~s~-----d----n~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~~----~p~Ivs~s~DktvKvWn 178 (315)
T KOG0279|consen 113 FST-----D----NRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNES----NPIIVSASWDKTVKVWN 178 (315)
T ss_pred ecC-----C----CceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCCC----CcEEEEccCCceEEEEc
Confidence 985 3 4899999999999999986 4555555544 78999999999842 46999999999999999
Q ss_pred CCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEeeecccccce
Q 000743 473 LETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNS 552 (1313)
Q Consensus 473 L~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~~~s~~i 552 (1313)
+++.+....+.||++.++.+.++|||...++|+.| |.+.+||++.++.+..+. |...|....|.+ +
T Consensus 179 l~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkd--------g~~~LwdL~~~k~lysl~-a~~~v~sl~fsp----n- 244 (315)
T KOG0279|consen 179 LRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKD--------GEAMLWDLNEGKNLYSLE-AFDIVNSLCFSP----N- 244 (315)
T ss_pred cCCcchhhccccccccEEEEEECCCCCEEecCCCC--------ceEEEEEccCCceeEecc-CCCeEeeEEecC----C-
Confidence 99999999999999999999999999999998887 999999999999877654 555675555543 1
Q ss_pred eecccccCCcccccCcccccCCCcEEEEeCCcccccccccCCCCCCccccccCCCCCCCCCCcccccccccceeecCCCC
Q 000743 553 ISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERGVAFSTISEPSASHVRKGNSGKPSLNTRIGLQRKKQTIKCSCPYP 632 (1313)
Q Consensus 553 vSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~~~~~~~~~~~~~~p~~~~v~~g~~~k~~~~s~~~~q~~~~~ik~s~~~~ 632 (1313)
.+.+....+..||+||+..... .. ++..-..|...|. . ..+-+-+.|+.|
T Consensus 245 -------------rywL~~at~~sIkIwdl~~~~~---v~-----~l~~d~~g~s~~~--~-------~~~clslaws~d 294 (315)
T KOG0279|consen 245 -------------RYWLCAATATSIKIWDLESKAV---VE-----ELKLDGIGPSSKA--G-------DPICLSLAWSAD 294 (315)
T ss_pred -------------ceeEeeccCCceEEEeccchhh---hh-----hcccccccccccc--C-------CcEEEEEEEcCC
Confidence 1222223355699999852110 00 0000000111111 0 112355779999
Q ss_pred ceeEEEechhhhcccc
Q 000743 633 GIATLSFDLASLMFPY 648 (1313)
Q Consensus 633 ~~hil~fDle~li~~~ 648 (1313)
|.+.+.=+-...|...
T Consensus 295 G~tLf~g~td~~irv~ 310 (315)
T KOG0279|consen 295 GQTLFAGYTDNVIRVW 310 (315)
T ss_pred CcEEEeeecCCcEEEE
Confidence 9999988888877654
No 11
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=3.2e-23 Score=226.37 Aligned_cols=253 Identities=18% Similarity=0.183 Sum_probs=200.3
Q ss_pred CceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEec
Q 000743 318 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 397 (1313)
Q Consensus 318 ~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP 397 (1313)
....|.||.+.|.-...-+... .+.+++.|.+-+| | .+++++|+.++.||.+.|+++.|||
T Consensus 140 lvre~~GHkDGiW~Vaa~~tqp----i~gtASADhTA~i--W-------------s~Esg~CL~~Y~GH~GSVNsikfh~ 200 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADSTQP----ICGTASADHTARI--W-------------SLESGACLATYTGHTGSVNSIKFHN 200 (481)
T ss_pred ehhhhcccccceeeehhhcCCc----ceeecccccceeE--E-------------eeccccceeeecccccceeeEEecc
Confidence 3456778888887732222222 3666777777777 4 5688999999999999999999995
Q ss_pred cccCCCCCccCcEEEEEeCCCcEEEEEC------CC----------------------------------CceEEEEecc
Q 000743 398 MVGTAKGWSFNEVLVSGSMDCSIRIWDL------GS----------------------------------GNLITVMHHH 437 (1313)
Q Consensus 398 ~~s~pDGr~~~~~LaSGS~DgtIrVWDl------~t----------------------------------g~~l~t~~gH 437 (1313)
. ..+++++|.|++..||.. .. ..++..|.+|
T Consensus 201 -----s----~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH 271 (481)
T KOG0300|consen 201 -----S----GLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGH 271 (481)
T ss_pred -----c----cceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeecc
Confidence 2 389999999999999972 11 0256788999
Q ss_pred CCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCE
Q 000743 438 VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDV 517 (1313)
Q Consensus 438 ~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~Dgt 517 (1313)
.+.|.+..|... |+.++++++|++..+||+++++++..+.||....+.++-||..+.+++.+.| .+
T Consensus 272 ~~vV~a~dWL~g------g~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrD--------tT 337 (481)
T KOG0300|consen 272 RAVVSACDWLAG------GQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRD--------TT 337 (481)
T ss_pred ccceEehhhhcC------cceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccC--------ce
Confidence 999999999887 7999999999999999999999999999999999999999999999998887 99
Q ss_pred EEEEECCCC-cEEEEEeCCCCceeEEeeecccccceeecccccCCcccccCcccccCCCcEEEEeCCcccccccccCCCC
Q 000743 518 LFIWDVKTG-ARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERGVAFSTISE 596 (1313)
Q Consensus 518 IrVWDlrTG-~lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~~~~~~~~~~~~~~ 596 (1313)
.++||++.. +.+.+|+||+..|+++.|.. ..++++|+. |.|+|+|++++ |+++.++.
T Consensus 338 FRLWDFReaI~sV~VFQGHtdtVTS~vF~~--dd~vVSgSD----------------DrTvKvWdLrN----MRsplATI 395 (481)
T KOG0300|consen 338 FRLWDFREAIQSVAVFQGHTDTVTSVVFNT--DDRVVSGSD----------------DRTVKVWDLRN----MRSPLATI 395 (481)
T ss_pred eEeccchhhcceeeeecccccceeEEEEec--CCceeecCC----------------CceEEEeeecc----ccCcceee
Confidence 999999864 56899999999999988853 445777775 99999999987 66777777
Q ss_pred CCccccccCCCCCCCCCCcccccccccceeecCCCCceeEEEechhhhccc
Q 000743 597 PSASHVRKGNSGKPSLNTRIGLQRKKQTIKCSCPYPGIATLSFDLASLMFP 647 (1313)
Q Consensus 597 p~~~~v~~g~~~k~~~~s~~~~q~~~~~ik~s~~~~~~hil~fDle~li~~ 647 (1313)
++.+.++ ...+. ...|| +.-|+|+.|+.+|||...-..
T Consensus 396 RtdS~~N-----------Rvavs-~g~~i-IAiPhDNRqvRlfDlnG~Rla 433 (481)
T KOG0300|consen 396 RTDSPAN-----------RVAVS-KGHPI-IAIPHDNRQVRLFDLNGNRLA 433 (481)
T ss_pred ecCCccc-----------eeEee-cCCce-EEeccCCceEEEEecCCCccc
Confidence 7765533 11111 11133 234899999999999866433
No 12
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.90 E-value=2.5e-23 Score=230.74 Aligned_cols=168 Identities=29% Similarity=0.382 Sum_probs=157.0
Q ss_pred ceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCC
Q 000743 377 HVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWS 456 (1313)
Q Consensus 377 g~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g 456 (1313)
.+..+.+.||.++|.|+++.| .+++|+|||.|++|+|||+.+|++..++.||-..|..+++++. -
T Consensus 141 wKl~rVi~gHlgWVr~vavdP---------~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~r------H 205 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDP---------GNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKR------H 205 (460)
T ss_pred ceehhhhhhccceEEEEeeCC---------CceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeeccc------C
Confidence 366788999999999999987 3589999999999999999999999999999999999999998 3
Q ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCC
Q 000743 457 DCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTA 536 (1313)
Q Consensus 457 ~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~ 536 (1313)
.+++|++.|+.|+.||++..+.++.+.||-+.|.|++.+|.-+.|++|+.| .++||||+|+...+.++.||+
T Consensus 206 pYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grD--------st~RvWDiRtr~~V~~l~GH~ 277 (460)
T KOG0285|consen 206 PYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRD--------STIRVWDIRTRASVHVLSGHT 277 (460)
T ss_pred ceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCc--------ceEEEeeecccceEEEecCCC
Confidence 689999999999999999999999999999999999999999999998887 999999999999999999999
Q ss_pred CceeEEeeecccccceeecccccCCcccccCcccccCCCcEEEEeCCc
Q 000743 537 SHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 584 (1313)
Q Consensus 537 a~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~~ 584 (1313)
..|..+ .|.+..+++++||. |+|||+||++.
T Consensus 278 ~~V~~V-~~~~~dpqvit~S~----------------D~tvrlWDl~a 308 (460)
T KOG0285|consen 278 NPVASV-MCQPTDPQVITGSH----------------DSTVRLWDLRA 308 (460)
T ss_pred CcceeE-EeecCCCceEEecC----------------CceEEEeeecc
Confidence 999887 78888888999886 99999999973
No 13
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.89 E-value=1.7e-23 Score=230.87 Aligned_cols=203 Identities=24% Similarity=0.296 Sum_probs=174.3
Q ss_pred CCceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEe
Q 000743 317 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAH 396 (1313)
Q Consensus 317 ~~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafs 396 (1313)
.+...+.||.++|-| ..|....+++|+.|.+|+| | |+.+++++++|-+|...|..+.|+
T Consensus 228 ~c~~~L~GHtGSVLC------Lqyd~rviisGSSDsTvrv--W-------------Dv~tge~l~tlihHceaVLhlrf~ 286 (499)
T KOG0281|consen 228 ECLKILTGHTGSVLC------LQYDERVIVSGSSDSTVRV--W-------------DVNTGEPLNTLIHHCEAVLHLRFS 286 (499)
T ss_pred HHHHhhhcCCCcEEe------eeccceEEEecCCCceEEE--E-------------eccCCchhhHHhhhcceeEEEEEe
Confidence 356788999999999 5555556999999999999 3 457889999999999999999997
Q ss_pred ccccCCCCCccCcEEEEEeCCCcEEEEECCCCc---eEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEEC
Q 000743 397 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN---LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASL 473 (1313)
Q Consensus 397 P~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~---~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL 473 (1313)
. .+++|+|.|.+|++||+.+.. +.+.+.||...|+.|.|+. ++|+|+|.|.+|++|++
T Consensus 287 n-----------g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--------kyIVsASgDRTikvW~~ 347 (499)
T KOG0281|consen 287 N-----------GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--------KYIVSASGDRTIKVWST 347 (499)
T ss_pred C-----------CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--------ceEEEecCCceEEEEec
Confidence 2 599999999999999998764 5567889999999999964 69999999999999999
Q ss_pred CCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEeeeccccccee
Q 000743 474 ETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSI 553 (1313)
Q Consensus 474 ~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~~~s~~iv 553 (1313)
.++++++++.||.-.|-|+.+ .++++++|+.| .+|++||++.|.+++.++||..-|-++.|- ...++
T Consensus 348 st~efvRtl~gHkRGIAClQY--r~rlvVSGSSD--------ntIRlwdi~~G~cLRvLeGHEeLvRciRFd---~krIV 414 (499)
T KOG0281|consen 348 STCEFVRTLNGHKRGIACLQY--RDRLVVSGSSD--------NTIRLWDIECGACLRVLEGHEELVRCIRFD---NKRIV 414 (499)
T ss_pred cceeeehhhhcccccceehhc--cCeEEEecCCC--------ceEEEEeccccHHHHHHhchHHhhhheeec---Cceee
Confidence 999999999999988888877 57788876554 999999999999999999999988666663 23577
Q ss_pred ecccccCCcccccCcccccCCCcEEEEeCCccccc
Q 000743 554 SGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERG 588 (1313)
Q Consensus 554 SGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~~~~~~ 588 (1313)
+|.+ ||+||+||+...++.
T Consensus 415 SGaY----------------DGkikvWdl~aaldp 433 (499)
T KOG0281|consen 415 SGAY----------------DGKIKVWDLQAALDP 433 (499)
T ss_pred eccc----------------cceEEEEecccccCC
Confidence 8876 999999999865543
No 14
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=2e-22 Score=235.37 Aligned_cols=208 Identities=24% Similarity=0.297 Sum_probs=179.9
Q ss_pred ceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEecc
Q 000743 319 RDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRM 398 (1313)
Q Consensus 319 ~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~ 398 (1313)
...|.-..-+|.++.++..-.| +++|+.|+.|+|+.+ .+++.++.|..|.+.|.|++.||
T Consensus 48 VksfeV~~~PvRa~kfiaRknW----iv~GsDD~~IrVfny---------------nt~ekV~~FeAH~DyIR~iavHP- 107 (794)
T KOG0276|consen 48 VKSFEVSEVPVRAAKFIARKNW----IVTGSDDMQIRVFNY---------------NTGEKVKTFEAHSDYIRSIAVHP- 107 (794)
T ss_pred eeeeeecccchhhheeeeccce----EEEecCCceEEEEec---------------ccceeeEEeeccccceeeeeecC-
Confidence 4455555667777777766664 999999999999544 46678999999999999999998
Q ss_pred ccCCCCCccCcEEEEEeCCCcEEEEECCCC-ceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCc
Q 000743 399 VGTAKGWSFNEVLVSGSMDCSIRIWDLGSG-NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR 477 (1313)
Q Consensus 399 ~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg-~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~ 477 (1313)
...+++|+|+|-+|++||.+.+ .|.++|.||+.-|.+++|+|.. .+.|+|+|-|+||++|.+....
T Consensus 108 --------t~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD-----~ntFaS~sLDrTVKVWslgs~~ 174 (794)
T KOG0276|consen 108 --------TLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKD-----PNTFASASLDRTVKVWSLGSPH 174 (794)
T ss_pred --------CCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCC-----ccceeeeeccccEEEEEcCCCC
Confidence 3479999999999999999854 6899999999999999999985 4799999999999999999999
Q ss_pred EEEEecCCCCCcEEEEEcCCC--CEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEeeecccccceeec
Q 000743 478 VERMFPGHPNYPAKVVWDCPR--GYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISG 555 (1313)
Q Consensus 478 ~l~~l~gH~~~V~sVafsPdg--~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~~~s~~ivSG 555 (1313)
+..++.||...|+|+.+-+.| +||++|+.| .+|+|||..|..|++++.||+..|..+.|.++.. .+++|
T Consensus 175 ~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD--------~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lp-iiisg 245 (794)
T KOG0276|consen 175 PNFTLEGHEKGVNCVDYYTGGDKPYLISGADD--------LTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELP-IIISG 245 (794)
T ss_pred CceeeeccccCcceEEeccCCCcceEEecCCC--------ceEEEeecchHHHHHHhhcccccceEEEecCCCc-EEEEe
Confidence 999999999999999997755 699997665 9999999999999999999999998887766543 57788
Q ss_pred ccccCCcccccCcccccCCCcEEEEeCCc
Q 000743 556 SVLNGNTSVSSLLLPIHEDGTFRQSQIQN 584 (1313)
Q Consensus 556 S~l~g~~l~S~~lvs~s~DgtIr~Wdl~~ 584 (1313)
+. |||+|+|+-+.
T Consensus 246 sE----------------DGTvriWhs~T 258 (794)
T KOG0276|consen 246 SE----------------DGTVRIWNSKT 258 (794)
T ss_pred cC----------------CccEEEecCcc
Confidence 75 99999999653
No 15
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=3.9e-22 Score=233.00 Aligned_cols=248 Identities=18% Similarity=0.266 Sum_probs=196.1
Q ss_pred eEEEEeeeeccCCCc----cccceEEEEEecccC--------CCCCceeEEeecCCeeeeeeecceeeeCCCCeeeeeec
Q 000743 229 LLRMETVCFHVEETS----QWRPYISVWSLSQKH--------SGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSD 296 (1313)
Q Consensus 229 lv~i~svc~d~e~~l----~W~p~vtVWsl~~~~--------~~~~~q~~~~g~~~~~~dWiss~l~~~~~dGi~Iwk~~ 296 (1313)
--|+.++-+|+.+|- .++..+.||....+. +.+.+.++++.+. +|+ +.+.+.-.++|.
T Consensus 13 SdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRk----nWi---v~GsDD~~IrVf--- 82 (794)
T KOG0276|consen 13 SDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARK----NWI---VTGSDDMQIRVF--- 82 (794)
T ss_pred CCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeecc----ceE---EEecCCceEEEE---
Confidence 346777778888774 356689999664322 1112234455443 342 122222222222
Q ss_pred cccccccccccccccCCCCCCCceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCC
Q 000743 297 LTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNS 376 (1313)
Q Consensus 297 ~ss~~~~i~~l~~~~~~~~~~~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~t 376 (1313)
+.+..+.+..|..|.+-+.|+.+.|...| +++++.|-.|++|+|+ ..
T Consensus 83 ---------------nynt~ekV~~FeAH~DyIR~iavHPt~P~----vLtsSDDm~iKlW~we--------------~~ 129 (794)
T KOG0276|consen 83 ---------------NYNTGEKVKTFEAHSDYIRSIAVHPTLPY----VLTSSDDMTIKLWDWE--------------NE 129 (794)
T ss_pred ---------------ecccceeeEEeeccccceeeeeecCCCCe----EEecCCccEEEEeecc--------------Cc
Confidence 22233568899999999999887777774 9999999999998886 33
Q ss_pred ceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCC
Q 000743 377 HVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWS 456 (1313)
Q Consensus 377 g~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g 456 (1313)
..+.++|.||+..|.+++|+| .| .+.++|+|.|+||+||.+.+..+..++.+|...|+||.+-+.+. .
T Consensus 130 wa~~qtfeGH~HyVMqv~fnP----kD----~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gd----k 197 (794)
T KOG0276|consen 130 WACEQTFEGHEHYVMQVAFNP----KD----PNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGD----K 197 (794)
T ss_pred eeeeeEEcCcceEEEEEEecC----CC----ccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCC----c
Confidence 478999999999999999998 33 48899999999999999999999999999999999999988632 3
Q ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCC
Q 000743 457 DCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTA 536 (1313)
Q Consensus 457 ~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~ 536 (1313)
.+++||++|.++++||..+..|++++.||.+.|..+.|||.-..+++|++| ||+|||+-.|-+++.++.-.-
T Consensus 198 pylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsED--------GTvriWhs~Ty~lE~tLn~gl 269 (794)
T KOG0276|consen 198 PYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSED--------GTVRIWNSKTYKLEKTLNYGL 269 (794)
T ss_pred ceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCC--------ccEEEecCcceehhhhhhcCC
Confidence 599999999999999999999999999999999999999999999999887 999999999988888777555
Q ss_pred Cce
Q 000743 537 SHS 539 (1313)
Q Consensus 537 a~V 539 (1313)
..+
T Consensus 270 eRv 272 (794)
T KOG0276|consen 270 ERV 272 (794)
T ss_pred ceE
Confidence 566
No 16
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.89 E-value=3.8e-21 Score=229.05 Aligned_cols=216 Identities=17% Similarity=0.184 Sum_probs=173.6
Q ss_pred CCceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEe
Q 000743 317 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAH 396 (1313)
Q Consensus 317 ~~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafs 396 (1313)
.+.....+|...|.+... ....+..+++++.|+++++ |++....... . ...-++..+-..|...|+|++++
T Consensus 402 ~~~a~~~gH~~svgava~---~~~~asffvsvS~D~tlK~--W~l~~s~~~~-~---~~~~~~~~t~~aHdKdIN~Vaia 472 (775)
T KOG0319|consen 402 LCVAQANGHTNSVGAVAG---SKLGASFFVSVSQDCTLKL--WDLPKSKETA-F---PIVLTCRYTERAHDKDINCVAIA 472 (775)
T ss_pred hhhhhhcccccccceeee---cccCccEEEEecCCceEEE--ecCCCccccc-c---cceehhhHHHHhhcccccceEec
Confidence 356677899999999544 3334456999999999999 6653311000 0 00001122446899999999999
Q ss_pred ccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCC
Q 000743 397 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL 476 (1313)
Q Consensus 397 P~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~ 476 (1313)
| ++.+++|||.|++.++|+++....+.++.||+..|++|.|+|. .++++|+|.|+||+||.+.+.
T Consensus 473 ~---------ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~------dq~laT~SgD~TvKIW~is~f 537 (775)
T KOG0319|consen 473 P---------NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKN------DQLLATCSGDKTVKIWSISTF 537 (775)
T ss_pred C---------CCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccc------cceeEeccCCceEEEEEeccc
Confidence 7 3479999999999999999999999999999999999999998 689999999999999999999
Q ss_pred cEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEeeecccccceeecc
Q 000743 477 RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGS 556 (1313)
Q Consensus 477 ~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS 556 (1313)
.|+.+|.||+..|..+.|-.+|..|++++.| |-|++|+++++++++++.+|.+.|......+ .....+||+
T Consensus 538 SClkT~eGH~~aVlra~F~~~~~qliS~~ad--------GliKlWnikt~eC~~tlD~H~DrvWaL~~~~-~~~~~~tgg 608 (775)
T KOG0319|consen 538 SCLKTFEGHTSAVLRASFIRNGKQLISAGAD--------GLIKLWNIKTNECEMTLDAHNDRVWALSVSP-LLDMFVTGG 608 (775)
T ss_pred eeeeeecCccceeEeeeeeeCCcEEEeccCC--------CcEEEEeccchhhhhhhhhccceeEEEeecC-ccceeEecC
Confidence 9999999999999999999999999997766 9999999999999999999999995542211 111233443
Q ss_pred cccCCcccccCcccccCCCcEEEEe
Q 000743 557 VLNGNTSVSSLLLPIHEDGTFRQSQ 581 (1313)
Q Consensus 557 ~l~g~~l~S~~lvs~s~DgtIr~Wd 581 (1313)
.|+.|-+|.
T Consensus 609 ----------------~Dg~i~~wk 617 (775)
T KOG0319|consen 609 ----------------GDGRIIFWK 617 (775)
T ss_pred ----------------CCeEEEEee
Confidence 399999997
No 17
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=6.9e-21 Score=212.55 Aligned_cols=212 Identities=20% Similarity=0.249 Sum_probs=185.2
Q ss_pred CCceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEe
Q 000743 317 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAH 396 (1313)
Q Consensus 317 ~~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafs 396 (1313)
.++..+.+|...|.+..+.+... .+++++.|.+|+. | +..++-++++|.+|..+|.-++.+
T Consensus 184 ~c~ks~~gh~h~vS~V~f~P~gd----~ilS~srD~tik~--W-------------e~~tg~cv~t~~~h~ewvr~v~v~ 244 (406)
T KOG0295|consen 184 RCIKSLIGHEHGVSSVFFLPLGD----HILSCSRDNTIKA--W-------------ECDTGYCVKTFPGHSEWVRMVRVN 244 (406)
T ss_pred HHHHHhcCcccceeeEEEEecCC----eeeecccccceeE--E-------------ecccceeEEeccCchHhEEEEEec
Confidence 45677889999999976666654 5999999999988 4 457789999999999999999987
Q ss_pred ccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCC---------CCCCEEEEEeCCCe
Q 000743 397 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEH---------PWSDCFLSVGEDFS 467 (1313)
Q Consensus 397 P~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~---------~~g~~LaSgS~Dgt 467 (1313)
.|| .+++|+|.|.++++|-+.+++|...+..|..+|.+++|.|..... --++++.+++.|++
T Consensus 245 -----~DG----ti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDkt 315 (406)
T KOG0295|consen 245 -----QDG----TIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKT 315 (406)
T ss_pred -----CCe----eEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccce
Confidence 567 999999999999999999999999999999999999999863210 11469999999999
Q ss_pred EEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEeeecc
Q 000743 468 VALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKG 547 (1313)
Q Consensus 468 V~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~~ 547 (1313)
|++||+.++.|+.++.||.+.|..++|+|.|+||+++..| +++++||+++++++.++..|...|++..|-.
T Consensus 316 Ik~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDD--------ktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~- 386 (406)
T KOG0295|consen 316 IKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADD--------KTLRVWDLKNLQCMKTLEAHEHFVTSLDFHK- 386 (406)
T ss_pred EEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecC--------CcEEEEEeccceeeeccCCCcceeEEEecCC-
Confidence 9999999999999999999999999999999999986554 9999999999999999999999998887754
Q ss_pred cccceeecccccCCcccccCcccccCCCcEEEEe
Q 000743 548 ISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 581 (1313)
Q Consensus 548 ~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wd 581 (1313)
..+.+++|++ |.++|+|.
T Consensus 387 ~~p~VvTGsV----------------dqt~KvwE 404 (406)
T KOG0295|consen 387 TAPYVVTGSV----------------DQTVKVWE 404 (406)
T ss_pred CCceEEeccc----------------cceeeeee
Confidence 2346888886 89999996
No 18
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.88 E-value=1.1e-19 Score=216.35 Aligned_cols=397 Identities=17% Similarity=0.187 Sum_probs=258.2
Q ss_pred ceEEEEeecCcE-EEEEEeceeEEEeccCCceeeEEeecccceeecCCCcceeEEeeEEEeeecccccccccccccccce
Q 000743 98 GHLVSVATCGNI-IALVLKDHCIFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYE 176 (1313)
Q Consensus 98 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~ 176 (1313)
---++++-+|-+ +|.==+.||+|=-|-+..+|=.+.|-+..=|.+--++ |.|.+.+-. .
T Consensus 58 I~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~fk~~v~~i~fSPn------g~~fav~~g--------------n 117 (893)
T KOG0291|consen 58 ITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRFNFKRGVGAIKFSPN------GKFFAVGCG--------------N 117 (893)
T ss_pred eEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEEeecCccceEEECCC------CcEEEEEec--------------c
Confidence 344666666654 3444577899988888899988899888877765552 333333333 1
Q ss_pred eEEEEecCCCeE-EEEEeccccccccccccccCcccCCCCCceeEEEEEeeeeeEEEEeeeeccCCCccccceEEEEEec
Q 000743 177 NFAVWDNRGSAI-VYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLS 255 (1313)
Q Consensus 177 ~~~vw~~~~~~~-vy~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~iq~~~~lv~i~svc~d~e~~l~W~p~vtVWsl~ 255 (1313)
-+-||..-+... .| .|.-.--.+.+....-.++.+.+-.++++. .+-|- .+++|.+.
T Consensus 118 ~lqiw~~P~~~~~~~-----------~pFvl~r~~~g~fddi~si~Ws~DSr~l~~---gsrD~--------s~rl~~v~ 175 (893)
T KOG0291|consen 118 LLQIWHAPGEIKNEF-----------NPFVLHRTYLGHFDDITSIDWSDDSRLLVT---GSRDL--------SARLFGVD 175 (893)
T ss_pred eeEEEecCcchhccc-----------CcceEeeeecCCccceeEEEeccCCceEEe---ccccc--------eEEEEEec
Confidence 134555555433 12 111111122333343223333333333322 11221 45666554
Q ss_pred ccCCCCCceeEEeecCCeeeeeeecc----eeeeCCCCe-eeeeeccccccccccc-----------cccccC-CC----
Q 000743 256 QKHSGPGKQCRMVGEGFSFVDWVNNS----TFLDENEGS-CTGKSDLTFCQDTVPR-----------SEHVDS-RQ---- 314 (1313)
Q Consensus 256 ~~~~~~~~q~~~~g~~~~~~dWiss~----l~~~~~dGi-~Iwk~~~ss~~~~i~~-----------l~~~~~-~~---- 314 (1313)
.-.+ -..+.+.|+.+.++..+-.. ++.+..+|. .+|.....+....-.. .++.++ ..
T Consensus 176 ~~k~--~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~ 253 (893)
T KOG0291|consen 176 GNKN--LFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFW 253 (893)
T ss_pred cccc--cceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEE
Confidence 2211 23445556666554333211 566777774 4587764332211100 000000 00
Q ss_pred CCCCceecccCCceEEEEeeeecccccCC--EEEEEEcCCcEEEEEe---eccc----------------cC-------C
Q 000743 315 AGDGRDDFVHKEKIVSSSMVISESFYAPY--AIVYGFFSGEIEVIQF---DLFE----------------RH-------N 366 (1313)
Q Consensus 315 ~~~~~~~~~~H~~~Vts~l~is~~~fsP~--~LvsGs~DGsI~I~~w---dll~----------------~~-------~ 366 (1313)
.......+......|+| ..|++. .+++|..+|...++.. .+.. .+ .
T Consensus 254 ~k~~k~~ln~~~~kvta------a~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~ 327 (893)
T KOG0291|consen 254 YKTKKHYLNQNSSKVTA------AAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCS 327 (893)
T ss_pred EEEEeeeecccccceee------eeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCC
Confidence 00112223344467777 455554 5999999999888642 0000 00 1
Q ss_pred C--CCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEE
Q 000743 367 S--PGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQI 444 (1313)
Q Consensus 367 ~--~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV 444 (1313)
+ +...|++.+...+...+||...++|++|+ ||| +++++|+.|+.|||||..+|.|+.+|..|++.|+.+
T Consensus 328 klgQLlVweWqsEsYVlKQQgH~~~i~~l~YS-----pDg----q~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v 398 (893)
T KOG0291|consen 328 KLGQLLVWEWQSESYVLKQQGHSDRITSLAYS-----PDG----QLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAV 398 (893)
T ss_pred ccceEEEEEeeccceeeeccccccceeeEEEC-----CCC----cEEEeccCCCcEEEEeccCceEEEEeccCCCceEEE
Confidence 1 23458888888888889999999999998 577 999999999999999999999999999999999999
Q ss_pred EECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC-CCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEEC
Q 000743 445 ILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHP-NYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 523 (1313)
Q Consensus 445 ~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~-~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDl 523 (1313)
.|+.. |+.++|.|-||+|+.||+...++-++|.... -...|++.+|.|..+..|+.| .=.|+||++
T Consensus 399 ~f~~~------g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d-------~F~IfvWS~ 465 (893)
T KOG0291|consen 399 QFTAR------GNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQD-------SFEIFVWSV 465 (893)
T ss_pred EEEec------CCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccc-------eEEEEEEEe
Confidence 99998 7999999999999999999999999998653 134699999999999998877 257999999
Q ss_pred CCCcEEEEEeCCCCceeEEeeecccccceeecccccCCcccccCcccccCCCcEEEEeCC
Q 000743 524 KTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 583 (1313)
Q Consensus 524 rTG~lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~ 583 (1313)
+||+++..+.||.++|....|.+ .| +.++++++ |.|||+|++-
T Consensus 466 qTGqllDiLsGHEgPVs~l~f~~-------~~-----~~LaS~SW-----DkTVRiW~if 508 (893)
T KOG0291|consen 466 QTGQLLDILSGHEGPVSGLSFSP-------DG-----SLLASGSW-----DKTVRIWDIF 508 (893)
T ss_pred ecCeeeehhcCCCCcceeeEEcc-------cc-----CeEEeccc-----cceEEEEEee
Confidence 99999999999999996654433 12 24445555 9999999984
No 19
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.87 E-value=1.2e-20 Score=211.54 Aligned_cols=353 Identities=19% Similarity=0.194 Sum_probs=241.1
Q ss_pred eEEeecccceeecCCC----cceeEEeeEEEeeecccccccccccccccceeEEEEecCCCeEEEEEecccccccccccc
Q 000743 130 GEICFVDNLFCLEGGS----TNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHF 205 (1313)
Q Consensus 130 ~~~~~~~~~~~~~~~~----~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~vw~~~~~~~vy~~~~~~~~~~~~~~~ 205 (1313)
|==.||..+|-.|++. +--.+|+|+|| +..= .+++.=-...+++++ +++|....-.
T Consensus 36 gLs~ivN~ll~se~~~~K~~pFDFLi~gelL-RtsL-------------~e~l~~kgiSsE~~l-eIEYv~~~~a----- 95 (423)
T KOG0313|consen 36 GLSNIVNKLLKSENGFWKPVPFDFLIKGELL-RTSL-------------DEHLEEKGISSEEIL-EIEYVEAITA----- 95 (423)
T ss_pred cHHHHHHHHHhccCCcCCCCcceEEEcceee-eccH-------------HHHHHHcCcChhhee-EEEEEEecCC-----
Confidence 3334666777777552 34578999999 5443 233332345555553 3444432221
Q ss_pred ccCcccCCCCCceeEEEEEeeeeeEEEEeeeeccCCCccccceEEEEEecccCCCCCceeEEeecCCee--eeeeecc--
Q 000743 206 EIPAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSF--VDWVNNS-- 281 (1313)
Q Consensus 206 ~~p~~~~~~~~~~~i~~iq~~~~lv~i~svc~d~e~~l~W~p~vtVWsl~~~~~~~~~q~~~~g~~~~~--~dWiss~-- 281 (1313)
|....+...+-.|..+|... --|-+.|||. .+++|+...+ ......|+.+.+ +.|+..-
T Consensus 96 --P~pl~~~~hdDWVSsv~~~~--~~IltgsYDg--------~~riWd~~Gk-----~~~~~~Ght~~ik~v~~v~~n~~ 158 (423)
T KOG0313|consen 96 --PKPLQCFLHDDWVSSVKGAS--KWILTGSYDG--------TSRIWDLKGK-----SIKTIVGHTGPIKSVAWVIKNSS 158 (423)
T ss_pred --CCccccccchhhhhhhcccC--ceEEEeecCC--------eeEEEecCCc-----eEEEEecCCcceeeeEEEecCCc
Confidence 22223333333777777663 3355688986 7789966421 123445555544 4676432
Q ss_pred ----eeeeCCCCeeeeeeccccccccccccccccCCCCCCCceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEE
Q 000743 282 ----TFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVI 357 (1313)
Q Consensus 282 ----l~~~~~dGi~Iwk~~~ss~~~~i~~l~~~~~~~~~~~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~ 357 (1313)
....+++.++.|+.+.... .......-.||...|-+....++.. ++++|+.|..+.|
T Consensus 159 ~~~fvsas~Dqtl~Lw~~~~~~~--------------~~~~~~~~~GHk~~V~sVsv~~sgt----r~~SgS~D~~lki- 219 (423)
T KOG0313|consen 159 SCLFVSASMDQTLRLWKWNVGEN--------------KVKALKVCRGHKRSVDSVSVDSSGT----RFCSGSWDTMLKI- 219 (423)
T ss_pred cceEEEecCCceEEEEEecCchh--------------hhhHHhHhcccccceeEEEecCCCC----eEEeecccceeee-
Confidence 2223344456666654322 1122333449999999976666665 7999999999999
Q ss_pred EeeccccC-----CC-------CCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEEC
Q 000743 358 QFDLFERH-----NS-------PGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDL 425 (1313)
Q Consensus 358 ~wdll~~~-----~~-------~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl 425 (1313)
|+.-... .. ..+.....++.++.++.||+++|.++.|++ ...++|+|.|+||+.||+
T Consensus 220 -Ws~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d----------~~v~yS~SwDHTIk~WDl 288 (423)
T KOG0313|consen 220 -WSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD----------ATVIYSVSWDHTIKVWDL 288 (423)
T ss_pred -cccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC----------CCceEeecccceEEEEEe
Confidence 5511111 00 011123445678899999999999999974 368999999999999999
Q ss_pred CCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCc---EEEEecCCCCCcEEEEEcCCCCEEE
Q 000743 426 GSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR---VERMFPGHPNYPAKVVWDCPRGYIA 502 (1313)
Q Consensus 426 ~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~---~l~~l~gH~~~V~sVafsPdg~~La 502 (1313)
.++.++.++. -....+++..+|. .++|++||.|..++|||.|++. ..++|.||.+.|.++.|+|...|++
T Consensus 289 etg~~~~~~~-~~ksl~~i~~~~~------~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~ 361 (423)
T KOG0313|consen 289 ETGGLKSTLT-TNKSLNCISYSPL------SKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQL 361 (423)
T ss_pred ecccceeeee-cCcceeEeecccc------cceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEE
Confidence 9999988887 4567999999998 6899999999999999999764 4578999999999999999887665
Q ss_pred -EEecCCCCCCCCCCEEEEEECCCCc-EEEEEeCCCCceeEEeeecccccceeecccccCCcccccCcccccCCCcEEEE
Q 000743 503 -CLCRDHSRTSDAVDVLFIWDVKTGA-RERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQS 580 (1313)
Q Consensus 503 -tgs~DlsGssD~DgtIrVWDlrTG~-lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~W 580 (1313)
+|+.| +++++||+|+.. .+..+.||.+.|.++.|.. ..-+++|+. |.++|+.
T Consensus 362 ~S~S~D--------~t~klWDvRS~k~plydI~~h~DKvl~vdW~~--~~~IvSGGa----------------D~~l~i~ 415 (423)
T KOG0313|consen 362 VSGSYD--------NTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE--GGLIVSGGA----------------DNKLRIF 415 (423)
T ss_pred EEEecC--------CeEEEEEeccCCCcceeeccCCceEEEEeccC--CceEEeccC----------------cceEEEe
Confidence 44444 999999999977 8999999999998887754 112445543 9999987
Q ss_pred eC
Q 000743 581 QI 582 (1313)
Q Consensus 581 dl 582 (1313)
.-
T Consensus 416 ~~ 417 (423)
T KOG0313|consen 416 KG 417 (423)
T ss_pred cc
Confidence 64
No 20
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.87 E-value=2.7e-21 Score=221.33 Aligned_cols=246 Identities=18% Similarity=0.241 Sum_probs=194.5
Q ss_pred ecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEecccc
Q 000743 321 DFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVG 400 (1313)
Q Consensus 321 ~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s 400 (1313)
.-..|.+.|+...|+|+... .+++++.++.+.| ||.....+.... .....+...|.||++.-++|+|++
T Consensus 119 ~~i~h~gEVnRaRymPQnp~---iVAt~t~~~dv~V--fd~tk~~s~~~~---~~~~~Pdl~L~gH~~eg~glsWn~--- 187 (422)
T KOG0264|consen 119 QKINHDGEVNRARYMPQNPN---IVATKTSSGDVYV--FDYTKHPSKPKA---SGECRPDLRLKGHEKEGYGLSWNR--- 187 (422)
T ss_pred EeccCCccchhhhhCCCCCc---EEEecCCCCCEEE--EEeccCCCcccc---cccCCCceEEEeeccccccccccc---
Confidence 34579999999999988763 5777888999999 665433221110 113356678999999889999985
Q ss_pred CCCCCccCcEEEEEeCCCcEEEEECCCC-------ceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEEC
Q 000743 401 TAKGWSFNEVLVSGSMDCSIRIWDLGSG-------NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASL 473 (1313)
Q Consensus 401 ~pDGr~~~~~LaSGS~DgtIrVWDl~tg-------~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL 473 (1313)
...-.|+||+.|++|++||+... .+...|.+|...|..++|+|.+ .+.|+|+++|+.+.|||+
T Consensus 188 -----~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h-----~~lF~sv~dd~~L~iwD~ 257 (422)
T KOG0264|consen 188 -----QQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLH-----EDLFGSVGDDGKLMIWDT 257 (422)
T ss_pred -----ccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccc-----hhhheeecCCCeEEEEEc
Confidence 23458999999999999999743 2567799999999999999985 479999999999999999
Q ss_pred C--CCcEEEEecCCCCCcEEEEEcCCCCE-EEEEecCCCCCCCCCCEEEEEECCC-CcEEEEEeCCCCceeEEeeecccc
Q 000743 474 E--TLRVERMFPGHPNYPAKVVWDCPRGY-IACLCRDHSRTSDAVDVLFIWDVKT-GARERVLRGTASHSMFDHFCKGIS 549 (1313)
Q Consensus 474 ~--t~~~l~~l~gH~~~V~sVafsPdg~~-Latgs~DlsGssD~DgtIrVWDlrT-G~lv~~L~GH~a~Vi~~~~c~~~s 549 (1313)
| +.++.....+|.+.|.|++|+|.+.+ ||||+.| ++|++||+|+ .+++.++.||.+.|..+.|.+...
T Consensus 258 R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D--------~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~e 329 (422)
T KOG0264|consen 258 RSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSAD--------KTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNE 329 (422)
T ss_pred CCCCCCCcccccccCCceeEEEeCCCCCceEEeccCC--------CcEEEeechhcccCceeccCCCcceEEEEeCCCCC
Confidence 9 56677788999999999999997765 4554444 9999999998 467899999999998888876433
Q ss_pred cceeecccccCCcccccCcccccCCCcEEEEeCCcccccccccCC--CCCCccccccCCCCCCC
Q 000743 550 MNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERGVAFSTI--SEPSASHVRKGNSGKPS 611 (1313)
Q Consensus 550 ~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~~~~~~~~~~~~--~~p~~~~v~~g~~~k~~ 611 (1313)
. .++++ +.|+++.+||+.+...++....+ .+|++.++++||..|+.
T Consensus 330 t-----------vLASS-----g~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~ 377 (422)
T KOG0264|consen 330 T-----------VLASS-----GTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVS 377 (422)
T ss_pred c-----------eeEec-----ccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccc
Confidence 2 22222 34999999999998888764443 88999999999988863
No 21
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.87 E-value=6.5e-21 Score=231.07 Aligned_cols=205 Identities=22% Similarity=0.344 Sum_probs=170.0
Q ss_pred eecccC-CceEEEEeeeecccccCC--EEEEEEcCCcEEEEEeeccccCCCCCCccccCCc--eEEEEEecCCccEEEEE
Q 000743 320 DDFVHK-EKIVSSSMVISESFYAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSH--VSRQYFLGHTGAVLCLA 394 (1313)
Q Consensus 320 ~~~~~H-~~~Vts~l~is~~~fsP~--~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg--~~~~~L~GH~~~V~sLa 394 (1313)
..+..| ...|++ ..|+|+ .+++++.|+.+++ |+. .+. ...+.+.+|...|++++
T Consensus 152 ~~~~~~~~~sv~~------~~fs~~g~~l~~~~~~~~i~~--~~~-------------~~~~~~~~~~l~~h~~~v~~~~ 210 (456)
T KOG0266|consen 152 QTLAGHECPSVTC------VDFSPDGRALAAASSDGLIRI--WKL-------------EGIKSNLLRELSGHTRGVSDVA 210 (456)
T ss_pred eeecccccCceEE------EEEcCCCCeEEEccCCCcEEE--eec-------------ccccchhhccccccccceeeeE
Confidence 344444 677877 556665 4888999999999 542 111 25667799999999999
Q ss_pred EeccccCCCCCccCcEEEEEeCCCcEEEEEC-CCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEEC
Q 000743 395 AHRMVGTAKGWSFNEVLVSGSMDCSIRIWDL-GSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASL 473 (1313)
Q Consensus 395 fsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl-~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL 473 (1313)
|+ +|| .++++|+.|++||+||+ ..+.+++++.+|...|++++|+|+ ++.++||+.|++|++||+
T Consensus 211 fs-----~d~----~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~------g~~i~Sgs~D~tvriWd~ 275 (456)
T KOG0266|consen 211 FS-----PDG----SYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPD------GNLLVSGSDDGTVRIWDV 275 (456)
T ss_pred EC-----CCC----cEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCC------CCEEEEecCCCcEEEEec
Confidence 99 466 79999999999999999 566899999999999999999999 799999999999999999
Q ss_pred CCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCc--EEEEEeCCCCc--eeEEeeecccc
Q 000743 474 ETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA--RERVLRGTASH--SMFDHFCKGIS 549 (1313)
Q Consensus 474 ~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~--lv~~L~GH~a~--Vi~~~~c~~~s 549 (1313)
++++++..+.+|.+.|++++|++++.+|++++.| +.|++||+.++. +...+.++... +..++|++
T Consensus 276 ~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d--------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp--- 344 (456)
T KOG0266|consen 276 RTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD--------GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSP--- 344 (456)
T ss_pred cCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC--------ccEEEEECCCCceeeeecccCCCCCCceeEEEECC---
Confidence 9999999999999999999999999999997655 999999999999 67899998887 66666654
Q ss_pred cceeecccccCCcccccCcccccCCCcEEEEeCCcc
Q 000743 550 MNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQND 585 (1313)
Q Consensus 550 ~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~~~ 585 (1313)
+|..+. ..+.|+++|+|++++.
T Consensus 345 ---------~~~~ll-----~~~~d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 345 ---------NGKYLL-----SASLDRTLKLWDLRSG 366 (456)
T ss_pred ---------CCcEEE-----EecCCCeEEEEEccCC
Confidence 122222 2334899999999753
No 22
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.87 E-value=1.5e-20 Score=227.93 Aligned_cols=211 Identities=21% Similarity=0.331 Sum_probs=174.6
Q ss_pred ceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEecc
Q 000743 319 RDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRM 398 (1313)
Q Consensus 319 ~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~ 398 (1313)
...+.+|...|+.+.+.++.. .+++|+.|++|+| |+.. ..+.++++++||...|++++|+|
T Consensus 196 ~~~l~~h~~~v~~~~fs~d~~----~l~s~s~D~tiri--wd~~------------~~~~~~~~l~gH~~~v~~~~f~p- 256 (456)
T KOG0266|consen 196 LRELSGHTRGVSDVAFSPDGS----YLLSGSDDKTLRI--WDLK------------DDGRNLKTLKGHSTYVTSVAFSP- 256 (456)
T ss_pred hccccccccceeeeEECCCCc----EEEEecCCceEEE--eecc------------CCCeEEEEecCCCCceEEEEecC-
Confidence 445588999999954444444 4999999999999 6531 44578999999999999999995
Q ss_pred ccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCc-
Q 000743 399 VGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR- 477 (1313)
Q Consensus 399 ~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~- 477 (1313)
+| ++++||+.|++||+||+++++++.++.+|.+.|++++|+++ ++.+++++.|+.|++||+.++.
T Consensus 257 ----~g----~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d------~~~l~s~s~d~~i~vwd~~~~~~ 322 (456)
T KOG0266|consen 257 ----DG----NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPD------GNLLVSASYDGTIRVWDLETGSK 322 (456)
T ss_pred ----CC----CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCC------CCEEEEcCCCccEEEEECCCCce
Confidence 45 89999999999999999999999999999999999999999 7999999999999999999999
Q ss_pred -EEEEecCCCCC--cEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEeeecccccceee
Q 000743 478 -VERMFPGHPNY--PAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSIS 554 (1313)
Q Consensus 478 -~l~~l~gH~~~--V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~~~s~~ivS 554 (1313)
++..+.++... ++.++|+|++.|+++++.| +++++||++++...+.+.+|...+ ...++... .+
T Consensus 323 ~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d--------~~~~~w~l~~~~~~~~~~~~~~~~-~~~~~~~~----~~ 389 (456)
T KOG0266|consen 323 LCLKLLSGAENSAPVTSVQFSPNGKYLLSASLD--------RTLKLWDLRSGKSVGTYTGHSNLV-RCIFSPTL----ST 389 (456)
T ss_pred eeeecccCCCCCCceeEEEECCCCcEEEEecCC--------CeEEEEEccCCcceeeecccCCcc-eeEecccc----cC
Confidence 67888888766 8999999999999998876 999999999999999999999874 22122211 11
Q ss_pred cccccCCcccccCcccccCCCcEEEEeCCc
Q 000743 555 GSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 584 (1313)
Q Consensus 555 GS~l~g~~l~S~~lvs~s~DgtIr~Wdl~~ 584 (1313)
+ +.+ +++.+.|+.|++|++..
T Consensus 390 ~----~~~-----i~sg~~d~~v~~~~~~s 410 (456)
T KOG0266|consen 390 G----GKL-----IYSGSEDGSVYVWDSSS 410 (456)
T ss_pred C----CCe-----EEEEeCCceEEEEeCCc
Confidence 1 112 23344599999999863
No 23
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.86 E-value=4.1e-22 Score=224.57 Aligned_cols=208 Identities=17% Similarity=0.142 Sum_probs=177.5
Q ss_pred eecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCC-ccEEEEEEecc
Q 000743 320 DDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHT-GAVLCLAAHRM 398 (1313)
Q Consensus 320 ~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~-~~V~sLafsP~ 398 (1313)
..++.|...|++..+.++..| +++|..+|.|++ |+... ..++.+.+|. ..|++++|+|
T Consensus 132 tilQaHDs~Vr~m~ws~~g~w----miSgD~gG~iKy--Wqpnm--------------nnVk~~~ahh~eaIRdlafSp- 190 (464)
T KOG0284|consen 132 TILQAHDSPVRTMKWSHNGTW----MISGDKGGMIKY--WQPNM--------------NNVKIIQAHHAEAIRDLAFSP- 190 (464)
T ss_pred HHhhhhcccceeEEEccCCCE----EEEcCCCceEEe--cccch--------------hhhHHhhHhhhhhhheeccCC-
Confidence 346789999999777766663 999999999999 76321 3455666666 8999999997
Q ss_pred ccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcE
Q 000743 399 VGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRV 478 (1313)
Q Consensus 399 ~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~ 478 (1313)
.+..++|+|+|++|+|||....+....+.||.-.|.+++|||. ...++|+|.|+.|++||.++++|
T Consensus 191 --------nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~------kgLiasgskDnlVKlWDprSg~c 256 (464)
T KOG0284|consen 191 --------NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPT------KGLIASGSKDNLVKLWDPRSGSC 256 (464)
T ss_pred --------CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCc------cceeEEccCCceeEeecCCCcch
Confidence 3468999999999999999999999999999999999999998 57999999999999999999999
Q ss_pred EEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEeeecccccceeecccc
Q 000743 479 ERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVL 558 (1313)
Q Consensus 479 l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS~l 558 (1313)
+.++.+|...|..+.|+|+++||+|+++| .+++++|+|+-+.+++++||...|+.+.|.+...
T Consensus 257 l~tlh~HKntVl~~~f~~n~N~Llt~skD--------~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~--------- 319 (464)
T KOG0284|consen 257 LATLHGHKNTVLAVKFNPNGNWLLTGSKD--------QSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNE--------- 319 (464)
T ss_pred hhhhhhccceEEEEEEcCCCCeeEEccCC--------ceEEEEehhHhHHHHHhhcchhhheeeccccccc---------
Confidence 99999999999999999999999999988 9999999999899999999999998887765322
Q ss_pred cCCcccccCcccccCCCcEEEEeCCccc
Q 000743 559 NGNTSVSSLLLPIHEDGTFRQSQIQNDE 586 (1313)
Q Consensus 559 ~g~~l~S~~lvs~s~DgtIr~Wdl~~~~ 586 (1313)
+.+.+...|+.+..|.+...+
T Consensus 320 -------~lftsgg~Dgsvvh~~v~~~~ 340 (464)
T KOG0284|consen 320 -------SLFTSGGSDGSVVHWVVGLEE 340 (464)
T ss_pred -------cceeeccCCCceEEEeccccc
Confidence 223333449999999987433
No 24
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.86 E-value=3.5e-20 Score=202.29 Aligned_cols=230 Identities=19% Similarity=0.210 Sum_probs=176.3
Q ss_pred eeCCCC-eeeeeeccccccccccccccccCCCCCCCceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeecc
Q 000743 284 LDENEG-SCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLF 362 (1313)
Q Consensus 284 ~~~~dG-i~Iwk~~~ss~~~~i~~l~~~~~~~~~~~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll 362 (1313)
....|| .+||+...++....+| -....|..+.|.|... .+++|+-|....|++....
T Consensus 72 SaSqDGklIvWDs~TtnK~haip------------------l~s~WVMtCA~sPSg~----~VAcGGLdN~Csiy~ls~~ 129 (343)
T KOG0286|consen 72 SASQDGKLIVWDSFTTNKVHAIP------------------LPSSWVMTCAYSPSGN----FVACGGLDNKCSIYPLSTR 129 (343)
T ss_pred eeccCCeEEEEEcccccceeEEe------------------cCceeEEEEEECCCCC----eEEecCcCceeEEEecccc
Confidence 333444 4568776666544443 2235666655555444 3999999999999554321
Q ss_pred ccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEE
Q 000743 363 ERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVR 442 (1313)
Q Consensus 363 ~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~ 442 (1313)
.. -..-+..+.|.||++.+.|+.|-+ +..|+|||.|.|..+||+++|+.+..|.+|.+.|.
T Consensus 130 d~---------~g~~~v~r~l~gHtgylScC~f~d----------D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~ 190 (343)
T KOG0286|consen 130 DA---------EGNVRVSRELAGHTGYLSCCRFLD----------DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVM 190 (343)
T ss_pred cc---------cccceeeeeecCccceeEEEEEcC----------CCceEecCCCceEEEEEcccceEEEEecCCcccEE
Confidence 10 011145678999999999999962 35899999999999999999999999999999999
Q ss_pred EEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEE
Q 000743 443 QIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 522 (1313)
Q Consensus 443 sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWD 522 (1313)
++.++|.. ++.|+||+.|++.+|||+|.+.++++|.||...|++|+|.|+|.-+++|+.| ++.|+||
T Consensus 191 slsl~p~~-----~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD--------~tcRlyD 257 (343)
T KOG0286|consen 191 SLSLSPSD-----GNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDD--------ATCRLYD 257 (343)
T ss_pred EEecCCCC-----CCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCC--------ceeEEEe
Confidence 99999942 7999999999999999999999999999999999999999999999998776 9999999
Q ss_pred CCCCcEEEEEeCCC--CceeEEeeecccccceeecccccCCcccccCcccccCCCcEEEEeCCc
Q 000743 523 VKTGARERVLRGTA--SHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 584 (1313)
Q Consensus 523 lrTG~lv~~L~GH~--a~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~~ 584 (1313)
+|..+.+..++... ..++++.|+. +|- .+ +.-..|.+..+||.-+
T Consensus 258 lRaD~~~a~ys~~~~~~gitSv~FS~-------SGR-----lL-----fagy~d~~c~vWDtlk 304 (343)
T KOG0286|consen 258 LRADQELAVYSHDSIICGITSVAFSK-------SGR-----LL-----FAGYDDFTCNVWDTLK 304 (343)
T ss_pred ecCCcEEeeeccCcccCCceeEEEcc-------ccc-----EE-----EeeecCCceeEeeccc
Confidence 99999988887332 2344444432 333 22 2234599999999643
No 25
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.86 E-value=1e-20 Score=210.17 Aligned_cols=183 Identities=19% Similarity=0.219 Sum_probs=166.8
Q ss_pred CceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEec
Q 000743 318 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 397 (1313)
Q Consensus 318 ~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP 397 (1313)
....+.+|.+.|.|..+-|.+. .+++|+.|++|.| | |+.+|+...++.||...|..+++++
T Consensus 143 l~rVi~gHlgWVr~vavdP~n~----wf~tgs~DrtikI--w-------------Dlatg~LkltltGhi~~vr~vavS~ 203 (460)
T KOG0285|consen 143 LYRVISGHLGWVRSVAVDPGNE----WFATGSADRTIKI--W-------------DLATGQLKLTLTGHIETVRGVAVSK 203 (460)
T ss_pred ehhhhhhccceEEEEeeCCCce----eEEecCCCceeEE--E-------------EcccCeEEEeecchhheeeeeeecc
Confidence 3456789999999955555555 3999999999999 5 4578899999999999999999985
Q ss_pred cccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCc
Q 000743 398 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR 477 (1313)
Q Consensus 398 ~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~ 477 (1313)
-..+++|++.|+.|+.||+...+.++.+.||-+.|++++.+|. -+.|++++.|.++++||+|+..
T Consensus 204 ---------rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPT------ldvl~t~grDst~RvWDiRtr~ 268 (460)
T KOG0285|consen 204 ---------RHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPT------LDVLVTGGRDSTIRVWDIRTRA 268 (460)
T ss_pred ---------cCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEecccc------ceeEEecCCcceEEEeeecccc
Confidence 2479999999999999999999999999999999999999998 6899999999999999999999
Q ss_pred EEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEE
Q 000743 478 VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFD 542 (1313)
Q Consensus 478 ~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~ 542 (1313)
.+..+.||..+|..+.+.|.+..+++|+.| ++|++||++.|+...++..|...|...
T Consensus 269 ~V~~l~GH~~~V~~V~~~~~dpqvit~S~D--------~tvrlWDl~agkt~~tlt~hkksvral 325 (460)
T KOG0285|consen 269 SVHVLSGHTNPVASVMCQPTDPQVITGSHD--------STVRLWDLRAGKTMITLTHHKKSVRAL 325 (460)
T ss_pred eEEEecCCCCcceeEEeecCCCceEEecCC--------ceEEEeeeccCceeEeeecccceeeEE
Confidence 999999999999999999999999998887 999999999999999999999888654
No 26
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.86 E-value=5.5e-22 Score=218.97 Aligned_cols=190 Identities=29% Similarity=0.455 Sum_probs=160.7
Q ss_pred CCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCC
Q 000743 325 KEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKG 404 (1313)
Q Consensus 325 H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDG 404 (1313)
....|+| ..|...++++|..|.+|+| || ..+..+.+.|.||+|.|.|+.|.
T Consensus 196 ~skgVYC------lQYDD~kiVSGlrDnTiki--WD-------------~n~~~c~~~L~GHtGSVLCLqyd-------- 246 (499)
T KOG0281|consen 196 NSKGVYC------LQYDDEKIVSGLRDNTIKI--WD-------------KNSLECLKILTGHTGSVLCLQYD-------- 246 (499)
T ss_pred cCCceEE------EEecchhhhcccccCceEE--ec-------------cccHHHHHhhhcCCCcEEeeecc--------
Confidence 4567888 6676678999999999999 64 45567899999999999999986
Q ss_pred CccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCc---EEEE
Q 000743 405 WSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR---VERM 481 (1313)
Q Consensus 405 r~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~---~l~~ 481 (1313)
.+.++|||.|.||++||..+|+++.++.+|...|..+.|+. .+++|+|.|+++++||+.... +.+.
T Consensus 247 ---~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n--------g~mvtcSkDrsiaVWdm~sps~it~rrV 315 (499)
T KOG0281|consen 247 ---ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN--------GYMVTCSKDRSIAVWDMASPTDITLRRV 315 (499)
T ss_pred ---ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC--------CEEEEecCCceeEEEeccCchHHHHHHH
Confidence 37999999999999999999999999999999999999974 589999999999999997654 3457
Q ss_pred ecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEeeecccccceeecccccCC
Q 000743 482 FPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGN 561 (1313)
Q Consensus 482 l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS~l~g~ 561 (1313)
+.||...|+.+.|+ .+|+++++.| .||++|++.|++.++++.||.-.+-+.++- ..-+++||
T Consensus 316 LvGHrAaVNvVdfd--~kyIVsASgD--------RTikvW~~st~efvRtl~gHkRGIAClQYr---~rlvVSGS----- 377 (499)
T KOG0281|consen 316 LVGHRAAVNVVDFD--DKYIVSASGD--------RTIKVWSTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGS----- 377 (499)
T ss_pred Hhhhhhheeeeccc--cceEEEecCC--------ceEEEEeccceeeehhhhcccccceehhcc---CeEEEecC-----
Confidence 78999999999995 5699986655 999999999999999999999988443331 12255665
Q ss_pred cccccCcccccCCCcEEEEeCC
Q 000743 562 TSVSSLLLPIHEDGTFRQSQIQ 583 (1313)
Q Consensus 562 ~l~S~~lvs~s~DgtIr~Wdl~ 583 (1313)
+|.|||+|++.
T Consensus 378 -----------SDntIRlwdi~ 388 (499)
T KOG0281|consen 378 -----------SDNTIRLWDIE 388 (499)
T ss_pred -----------CCceEEEEecc
Confidence 39999999975
No 27
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.85 E-value=9.6e-20 Score=195.15 Aligned_cols=183 Identities=20% Similarity=0.339 Sum_probs=152.7
Q ss_pred CCceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEe
Q 000743 317 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAH 396 (1313)
Q Consensus 317 ~~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafs 396 (1313)
.+..+|.+|...|++.-+-.+.. .+++|++||+++| ||+.. ..+ +....|..+|+++..|
T Consensus 74 ~Pv~t~e~h~kNVtaVgF~~dgr----WMyTgseDgt~kI--WdlR~-------------~~~-qR~~~~~spVn~vvlh 133 (311)
T KOG0315|consen 74 NPVATFEGHTKNVTAVGFQCDGR----WMYTGSEDGTVKI--WDLRS-------------LSC-QRNYQHNSPVNTVVLH 133 (311)
T ss_pred CceeEEeccCCceEEEEEeecCe----EEEecCCCceEEE--EeccC-------------ccc-chhccCCCCcceEEec
Confidence 47889999999999944444444 3999999999999 76432 223 3344577999999998
Q ss_pred ccccCCCCCccCcEEEEEeCCCcEEEEECCCC------------------------------------------------
Q 000743 397 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG------------------------------------------------ 428 (1313)
Q Consensus 397 P~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg------------------------------------------------ 428 (1313)
| ++..|++|..+|.|++||+...
T Consensus 134 p---------nQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~ 204 (311)
T KOG0315|consen 134 P---------NQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASE 204 (311)
T ss_pred C---------CcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcccc
Confidence 6 3468999999999999998642
Q ss_pred -ceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCC-cEEEEecCCCCCcEEEEEcCCCCEEEEEec
Q 000743 429 -NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL-RVERMFPGHPNYPAKVVWDCPRGYIACLCR 506 (1313)
Q Consensus 429 -~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~-~~l~~l~gH~~~V~sVafsPdg~~Latgs~ 506 (1313)
+++++|+.|.+.+..+.++|+ +++|+++|.|++++||+.++. +....+.+|...++.++|+.++.||+||+.
T Consensus 205 l~P~~k~~ah~~~il~C~lSPd------~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTass 278 (311)
T KOG0315|consen 205 LEPVHKFQAHNGHILRCLLSPD------VKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASS 278 (311)
T ss_pred ceEhhheecccceEEEEEECCC------CcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCC
Confidence 235567789999999999999 799999999999999999988 677889999999999999999999999766
Q ss_pred CCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEE
Q 000743 507 DHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFD 542 (1313)
Q Consensus 507 DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~ 542 (1313)
| +++++||++.++.++.+.||....+++
T Consensus 279 d--------~~~rlW~~~~~k~v~qy~gh~K~~vc~ 306 (311)
T KOG0315|consen 279 D--------HTARLWDLSAGKEVRQYQGHHKAAVCV 306 (311)
T ss_pred C--------CceeecccccCceeeecCCcccccEEE
Confidence 5 999999999999999999998776553
No 28
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.5e-20 Score=225.86 Aligned_cols=206 Identities=22% Similarity=0.239 Sum_probs=172.4
Q ss_pred CceecccCCceEEEEeeeecccccCC--EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEE
Q 000743 318 GRDDFVHKEKIVSSSMVISESFYAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAA 395 (1313)
Q Consensus 318 ~~~~~~~H~~~Vts~l~is~~~fsP~--~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLaf 395 (1313)
.+..|.+|.++|.. ..|+|. .+++|+.|-.|++ | +.++.+++.+|.||-+.|..+.|
T Consensus 43 li~rFdeHdGpVRg------v~FH~~qplFVSGGDDykIkV--W-------------nYk~rrclftL~GHlDYVRt~~F 101 (1202)
T KOG0292|consen 43 LIDRFDEHDGPVRG------VDFHPTQPLFVSGGDDYKIKV--W-------------NYKTRRCLFTLLGHLDYVRTVFF 101 (1202)
T ss_pred HHhhhhccCCccce------eeecCCCCeEEecCCccEEEE--E-------------ecccceehhhhccccceeEEeec
Confidence 46789999999999 566665 4899999999999 4 33566899999999999999999
Q ss_pred eccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCC
Q 000743 396 HRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET 475 (1313)
Q Consensus 396 sP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t 475 (1313)
||. -.+++|+|+|.|||||+..+.+|+..+.||...|.|..|||. .+.++|+|-|.|||+||+..
T Consensus 102 Hhe---------yPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhpt------EDlIVSaSLDQTVRVWDisG 166 (1202)
T KOG0292|consen 102 HHE---------YPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPT------EDLIVSASLDQTVRVWDISG 166 (1202)
T ss_pred cCC---------CceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCc------cceEEEecccceEEEEeecc
Confidence 973 379999999999999999999999999999999999999997 58999999999999999842
Q ss_pred C---------------------------c--EEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCC
Q 000743 476 L---------------------------R--VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 526 (1313)
Q Consensus 476 ~---------------------------~--~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG 526 (1313)
. . ..+.+.||.-.|+-++|||.-..+++|+.| ..|++|.+..-
T Consensus 167 LRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DD--------RqVKlWrmnet 238 (1202)
T KOG0292|consen 167 LRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADD--------RQVKLWRMNET 238 (1202)
T ss_pred hhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCc--------ceeeEEEeccc
Confidence 1 1 124678999999999999999999987665 99999999754
Q ss_pred c--EEEEEeCCCCceeEEeeecccccceeecccccCCcccccCcccccCCCcEEEEeCCc
Q 000743 527 A--RERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 584 (1313)
Q Consensus 527 ~--lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~~ 584 (1313)
+ .+.+..||.+.|.++.|.+. .+..++.++|++||+||+.+
T Consensus 239 KaWEvDtcrgH~nnVssvlfhp~-----------------q~lIlSnsEDksirVwDm~k 281 (1202)
T KOG0292|consen 239 KAWEVDTCRGHYNNVSSVLFHPH-----------------QDLILSNSEDKSIRVWDMTK 281 (1202)
T ss_pred cceeehhhhcccCCcceEEecCc-----------------cceeEecCCCccEEEEeccc
Confidence 3 35778899999988765431 12345556799999999864
No 29
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.85 E-value=1.2e-20 Score=212.86 Aligned_cols=204 Identities=17% Similarity=0.246 Sum_probs=166.4
Q ss_pred eecccCC-ceEEEEeeeecccccCC--EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEe
Q 000743 320 DDFVHKE-KIVSSSMVISESFYAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAH 396 (1313)
Q Consensus 320 ~~~~~H~-~~Vts~l~is~~~fsP~--~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafs 396 (1313)
..+..|. ..|++ ..|+|+ ++++++.||+|+| ||.. ..+....|.||.-.|.|++||
T Consensus 173 k~~~ahh~eaIRd------lafSpnDskF~t~SdDg~iki--Wdf~-------------~~kee~vL~GHgwdVksvdWH 231 (464)
T KOG0284|consen 173 KIIQAHHAEAIRD------LAFSPNDSKFLTCSDDGTIKI--WDFR-------------MPKEERVLRGHGWDVKSVDWH 231 (464)
T ss_pred HHhhHhhhhhhhe------eccCCCCceeEEecCCCeEEE--Eecc-------------CCchhheeccCCCCcceeccC
Confidence 3444444 78888 666665 6999999999999 5532 235567889999999999999
Q ss_pred ccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCC
Q 000743 397 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL 476 (1313)
Q Consensus 397 P~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~ 476 (1313)
| ...+++|||.|..|++||.++|+|+.++.+|...|..+.|+|+ +++|+|+|.|.+++++|+++.
T Consensus 232 P---------~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n------~N~Llt~skD~~~kv~DiR~m 296 (464)
T KOG0284|consen 232 P---------TKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPN------GNWLLTGSKDQSCKVFDIRTM 296 (464)
T ss_pred C---------ccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCC------CCeeEEccCCceEEEEehhHh
Confidence 8 2359999999999999999999999999999999999999999 799999999999999999999
Q ss_pred cEEEEecCCCCCcEEEEEcCCCC-EEEEEecCCCCCCCCCCEEEEEECCCCcEEEEE-eCCCCceeEEeeecccccceee
Q 000743 477 RVERMFPGHPNYPAKVVWDCPRG-YIACLCRDHSRTSDAVDVLFIWDVKTGARERVL-RGTASHSMFDHFCKGISMNSIS 554 (1313)
Q Consensus 477 ~~l~~l~gH~~~V~sVafsPdg~-~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L-~GH~a~Vi~~~~c~~~s~~ivS 554 (1313)
+.++.+++|...|+++.|+|-.. .+.+||.| |.|..|.+...+.+-.+ .+|...|.+..|.+ +....++
T Consensus 297 kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~D--------gsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hP-lGhil~t 367 (464)
T KOG0284|consen 297 KELFTYRGHKKDVTSLTWHPLNESLFTSGGSD--------GSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHP-LGHILAT 367 (464)
T ss_pred HHHHHhhcchhhheeeccccccccceeeccCC--------CceEEEeccccccccCCCcccccceeeeeccc-cceeEee
Confidence 99999999999999999999665 55554444 99999999855554444 58999997776644 2223444
Q ss_pred cccccCCcccccCcccccCCCcEEEEeCCc
Q 000743 555 GSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 584 (1313)
Q Consensus 555 GS~l~g~~l~S~~lvs~s~DgtIr~Wdl~~ 584 (1313)
|+ .|.++|.|.-.+
T Consensus 368 gs----------------nd~t~rfw~r~r 381 (464)
T KOG0284|consen 368 GS----------------NDRTVRFWTRNR 381 (464)
T ss_pred cC----------------CCcceeeeccCC
Confidence 44 399999998544
No 30
>PTZ00421 coronin; Provisional
Probab=99.84 E-value=2.4e-19 Score=218.38 Aligned_cols=221 Identities=16% Similarity=0.223 Sum_probs=164.2
Q ss_pred eecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccc
Q 000743 320 DDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMV 399 (1313)
Q Consensus 320 ~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~ 399 (1313)
..+.+|.+.|+++.+.+. .+..+++|+.||.|++ |++..... ......++..+.+|...|.+++|+|
T Consensus 69 ~~l~GH~~~V~~v~fsP~---d~~~LaSgS~DgtIkI--Wdi~~~~~------~~~~~~~l~~L~gH~~~V~~l~f~P-- 135 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPF---DPQKLFTASEDGTIMG--WGIPEEGL------TQNISDPIVHLQGHTKKVGIVSFHP-- 135 (493)
T ss_pred ceEeCCCCCEEEEEEcCC---CCCEEEEEeCCCEEEE--EecCCCcc------ccccCcceEEecCCCCcEEEEEeCc--
Confidence 457899999999443331 1136999999999999 65422100 0011246788999999999999996
Q ss_pred cCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEE
Q 000743 400 GTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVE 479 (1313)
Q Consensus 400 s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l 479 (1313)
++ .++|+||+.|++|++||+.+++.+..+.+|...|++++|+|+ |.+|++++.|++|++||+++++.+
T Consensus 136 ---~~---~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spd------G~lLatgs~Dg~IrIwD~rsg~~v 203 (493)
T PTZ00421 136 ---SA---MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLD------GSLLCTTSKDKKLNIIDPRDGTIV 203 (493)
T ss_pred ---CC---CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECC------CCEEEEecCCCEEEEEECCCCcEE
Confidence 22 369999999999999999999999999999999999999999 789999999999999999999999
Q ss_pred EEecCCCCCc-EEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCc-EEEEEeCCCCceeEEeeecccccceeeccc
Q 000743 480 RMFPGHPNYP-AKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA-RERVLRGTASHSMFDHFCKGISMNSISGSV 557 (1313)
Q Consensus 480 ~~l~gH~~~V-~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~-lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS~ 557 (1313)
..+.+|.+.. ..+.|.+++..+++++.+ ++.| ++|++||+++.. .......|....+...+.......++.|+
T Consensus 204 ~tl~~H~~~~~~~~~w~~~~~~ivt~G~s--~s~D--r~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lgg- 278 (493)
T PTZ00421 204 SSVEAHASAKSQRCLWAKRKDLIITLGCS--KSQQ--RQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGS- 278 (493)
T ss_pred EEEecCCCCcceEEEEcCCCCeEEEEecC--CCCC--CeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEE-
Confidence 9999997654 578899999888887654 3444 999999999754 44444444443333222221111111111
Q ss_pred ccCCcccccCcccccCCCcEEEEeCCc
Q 000743 558 LNGNTSVSSLLLPIHEDGTFRQSQIQN 584 (1313)
Q Consensus 558 l~g~~l~S~~lvs~s~DgtIr~Wdl~~ 584 (1313)
..|++||+|++.+
T Consensus 279 --------------kgDg~Iriwdl~~ 291 (493)
T PTZ00421 279 --------------KGEGNIRCFELMN 291 (493)
T ss_pred --------------eCCCeEEEEEeeC
Confidence 1389999999974
No 31
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.84 E-value=1.6e-18 Score=200.51 Aligned_cols=206 Identities=18% Similarity=0.240 Sum_probs=169.2
Q ss_pred ceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEecc
Q 000743 319 RDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRM 398 (1313)
Q Consensus 319 ~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~ 398 (1313)
...+.+|...|+++.+-+...| ++++|+.|++|.+ |+ -..-+-..+++.|...|+|+.|+
T Consensus 140 vGei~GhSr~ins~~~KpsRPf---Ri~T~sdDn~v~f--fe-------------GPPFKFk~s~r~HskFV~~VRys-- 199 (603)
T KOG0318|consen 140 VGEITGHSRRINSVDFKPSRPF---RIATGSDDNTVAF--FE-------------GPPFKFKSSFREHSKFVNCVRYS-- 199 (603)
T ss_pred cceeeccceeEeeeeccCCCce---EEEeccCCCeEEE--ee-------------CCCeeeeecccccccceeeEEEC--
Confidence 4567899999999544444333 8999999999999 43 12235567788999999999999
Q ss_pred ccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEe---ccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCC
Q 000743 399 VGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMH---HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET 475 (1313)
Q Consensus 399 ~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~---gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t 475 (1313)
||| .+++|.+.||+|.+||=.+|+.+..+. +|.+.|.++.|+|| +..|+|+|.|.++|+||+.+
T Consensus 200 ---PDG----~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPD------s~~~~T~SaDkt~KIWdVs~ 266 (603)
T KOG0318|consen 200 ---PDG----SRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPD------STQFLTVSADKTIKIWDVST 266 (603)
T ss_pred ---CCC----CeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCC------CceEEEecCCceEEEEEeec
Confidence 577 999999999999999999999999998 89999999999999 68999999999999999987
Q ss_pred CcEEE-------------------------------------------EecCCCCCcEEEEEcCCCCEEEEEecCCCCCC
Q 000743 476 LRVER-------------------------------------------MFPGHPNYPAKVVWDCPRGYIACLCRDHSRTS 512 (1313)
Q Consensus 476 ~~~l~-------------------------------------------~l~gH~~~V~sVafsPdg~~Latgs~DlsGss 512 (1313)
.++++ .+.||...|+++..+|++.+|++|+.|
T Consensus 267 ~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyD----- 341 (603)
T KOG0318|consen 267 NSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYD----- 341 (603)
T ss_pred cceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccC-----
Confidence 64443 445899999999999999999997776
Q ss_pred CCCCEEEEEECCCCcEEEEE-eCCCCceeEEeeecccccceeecccccCCcccccCcccccCCCcEEEEeCC
Q 000743 513 DAVDVLFIWDVKTGARERVL-RGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 583 (1313)
Q Consensus 513 D~DgtIrVWDlrTG~lv~~L-~GH~a~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~ 583 (1313)
|.|.-||..+|...+.. ++|+..+....... ++.+++++-|.++|+-+++
T Consensus 342 ---G~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~------------------~~~~~t~g~Dd~l~~~~~~ 392 (603)
T KOG0318|consen 342 ---GHINSWDSGSGTSDRLAGKGHTNQIKGMAASE------------------SGELFTIGWDDTLRVISLK 392 (603)
T ss_pred ---ceEEEEecCCccccccccccccceEEEEeecC------------------CCcEEEEecCCeEEEEecc
Confidence 99999999999887666 78998886653211 1233455569999999875
No 32
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.84 E-value=5.4e-20 Score=210.55 Aligned_cols=197 Identities=20% Similarity=0.275 Sum_probs=167.2
Q ss_pred ceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCc
Q 000743 327 KIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWS 406 (1313)
Q Consensus 327 ~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~ 406 (1313)
..||++.+..+.. .|++|+.||.++| |+ .+|....+|..|+++|.+|.|+ .+|
T Consensus 236 kdVT~L~Wn~~G~----~LatG~~~G~~ri--w~--------------~~G~l~~tl~~HkgPI~slKWn-----k~G-- 288 (524)
T KOG0273|consen 236 KDVTSLDWNNDGT----LLATGSEDGEARI--WN--------------KDGNLISTLGQHKGPIFSLKWN-----KKG-- 288 (524)
T ss_pred CCcceEEecCCCC----eEEEeecCcEEEE--Ee--------------cCchhhhhhhccCCceEEEEEc-----CCC--
Confidence 4678844444444 4999999999999 75 4556788999999999999998 556
Q ss_pred cCcEEEEEeCCCcEEEEECCCCc-----------------------------------------eEEEEeccCCCEEEEE
Q 000743 407 FNEVLVSGSMDCSIRIWDLGSGN-----------------------------------------LITVMHHHVAPVRQII 445 (1313)
Q Consensus 407 ~~~~LaSGS~DgtIrVWDl~tg~-----------------------------------------~l~t~~gH~~~V~sV~ 445 (1313)
++|+||+.|+++.+||..+|+ ++.+|.+|.++|.++.
T Consensus 289 --~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk 366 (524)
T KOG0273|consen 289 --TYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALK 366 (524)
T ss_pred --CEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEE
Confidence 999999999999999986542 3456778999999999
Q ss_pred ECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEEcCCCC---------EEEEEecCCCCCCCCCC
Q 000743 446 LSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRG---------YIACLCRDHSRTSDAVD 516 (1313)
Q Consensus 446 fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~---------~Latgs~DlsGssD~Dg 516 (1313)
|+|. |.+|+|+|+|+|++||+.....+...+.+|...|+.+.|+|+|. .+++++.| +
T Consensus 367 ~n~t------g~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~d--------s 432 (524)
T KOG0273|consen 367 WNPT------GSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFD--------S 432 (524)
T ss_pred ECCC------CceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecC--------C
Confidence 9998 79999999999999999999999999999999999999999764 67776665 9
Q ss_pred EEEEEECCCCcEEEEEeCCCCceeEEeeecccccceeecccccCCcccccCcccccCCCcEEEEeCC
Q 000743 517 VLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 583 (1313)
Q Consensus 517 tIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~ 583 (1313)
+|++||+..|.++.+|..|+.+|..+.|.+ +|..++++.+ |+.|.+|+++
T Consensus 433 tV~lwdv~~gv~i~~f~kH~~pVysvafS~------------~g~ylAsGs~-----dg~V~iws~~ 482 (524)
T KOG0273|consen 433 TVKLWDVESGVPIHTLMKHQEPVYSVAFSP------------NGRYLASGSL-----DGCVHIWSTK 482 (524)
T ss_pred eEEEEEccCCceeEeeccCCCceEEEEecC------------CCcEEEecCC-----CCeeEecccc
Confidence 999999999999999999999998887754 2235555555 9999999986
No 33
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.84 E-value=9.5e-19 Score=200.46 Aligned_cols=188 Identities=22% Similarity=0.273 Sum_probs=158.5
Q ss_pred ceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEecc
Q 000743 319 RDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRM 398 (1313)
Q Consensus 319 ~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~ 398 (1313)
.+.|..|...--...++.... +++.+.||.|++++.+ ...|..++.||.+.|.++.|+|
T Consensus 311 ~q~f~~~s~~~lDVdW~~~~~-----F~ts~td~~i~V~kv~---------------~~~P~~t~~GH~g~V~alk~n~- 369 (524)
T KOG0273|consen 311 KQQFEFHSAPALDVDWQSNDE-----FATSSTDGCIHVCKVG---------------EDRPVKTFIGHHGEVNALKWNP- 369 (524)
T ss_pred EEeeeeccCCccceEEecCce-----EeecCCCceEEEEEec---------------CCCcceeeecccCceEEEEECC-
Confidence 445556666533334444444 7888999999996653 2367899999999999999996
Q ss_pred ccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCC--CC-CCCEEEEEeCCCeEEEEECCC
Q 000743 399 VGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTE--HP-WSDCFLSVGEDFSVALASLET 475 (1313)
Q Consensus 399 ~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~--~~-~g~~LaSgS~DgtV~LWDL~t 475 (1313)
.| .+|+|+|.|+|++||......+.+.|.+|...|+.+.|+|.++. .| .+..+++++.|++|++||+..
T Consensus 370 ----tg----~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~ 441 (524)
T KOG0273|consen 370 ----TG----SLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES 441 (524)
T ss_pred ----CC----ceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC
Confidence 34 89999999999999999999999999999999999999998642 33 356899999999999999999
Q ss_pred CcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEee
Q 000743 476 LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHF 544 (1313)
Q Consensus 476 ~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~ 544 (1313)
+.++++|..|..+|++++|+|+++|+++|+.| |.|.+|+.+++++++.+.|... |..+.|
T Consensus 442 gv~i~~f~kH~~pVysvafS~~g~ylAsGs~d--------g~V~iws~~~~~l~~s~~~~~~-Ifel~W 501 (524)
T KOG0273|consen 442 GVPIHTLMKHQEPVYSVAFSPNGRYLASGSLD--------GCVHIWSTKTGKLVKSYQGTGG-IFELCW 501 (524)
T ss_pred CceeEeeccCCCceEEEEecCCCcEEEecCCC--------CeeEeccccchheeEeecCCCe-EEEEEE
Confidence 99999999999999999999999999998877 9999999999999999998764 434434
No 34
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.84 E-value=1.9e-17 Score=197.68 Aligned_cols=208 Identities=19% Similarity=0.254 Sum_probs=164.4
Q ss_pred ceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEecc
Q 000743 319 RDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRM 398 (1313)
Q Consensus 319 ~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~ 398 (1313)
+...++|-..++|+.|.++.. .+++|+.||.|+| | |..++-|..+|..|+..|+.+.|+
T Consensus 343 VlKQQgH~~~i~~l~YSpDgq----~iaTG~eDgKVKv--W-------------n~~SgfC~vTFteHts~Vt~v~f~-- 401 (893)
T KOG0291|consen 343 VLKQQGHSDRITSLAYSPDGQ----LIATGAEDGKVKV--W-------------NTQSGFCFVTFTEHTSGVTAVQFT-- 401 (893)
T ss_pred eeeccccccceeeEEECCCCc----EEEeccCCCcEEE--E-------------eccCceEEEEeccCCCceEEEEEE--
Confidence 445678999999944444443 5999999999999 5 446778999999999999999998
Q ss_pred ccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCC-CEEEEEECCCCCCCCCCCEEEEEeCCC-eEEEEECCCC
Q 000743 399 VGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVA-PVRQIILSPPQTEHPWSDCFLSVGEDF-SVALASLETL 476 (1313)
Q Consensus 399 ~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~-~V~sV~fsPd~~~~~~g~~LaSgS~Dg-tV~LWDL~t~ 476 (1313)
.+| +.++|.|.||+||.||+...+..++|..-.. .-.|++..|. |..++.|+.|. -|.+|++++|
T Consensus 402 ---~~g----~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~s------GelV~AG~~d~F~IfvWS~qTG 468 (893)
T KOG0291|consen 402 ---ARG----NVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPS------GELVCAGAQDSFEIFVWSVQTG 468 (893)
T ss_pred ---ecC----CEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCC------CCEEEeeccceEEEEEEEeecC
Confidence 455 8999999999999999999999999984322 3568888888 78899998886 4999999999
Q ss_pred cEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCc-EEEEEeCCCCceeEEeeecccccceeec
Q 000743 477 RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA-RERVLRGTASHSMFDHFCKGISMNSISG 555 (1313)
Q Consensus 477 ~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~-lv~~L~GH~a~Vi~~~~c~~~s~~ivSG 555 (1313)
+.+-.+.||.++|.+++|+|++..|++|+-| +|||+||+-... .+.++ .+...++.+.|.+ +|
T Consensus 469 qllDiLsGHEgPVs~l~f~~~~~~LaS~SWD--------kTVRiW~if~s~~~vEtl-~i~sdvl~vsfrP-------dG 532 (893)
T KOG0291|consen 469 QLLDILSGHEGPVSGLSFSPDGSLLASGSWD--------KTVRIWDIFSSSGTVETL-EIRSDVLAVSFRP-------DG 532 (893)
T ss_pred eeeehhcCCCCcceeeEEccccCeEEecccc--------ceEEEEEeeccCceeeeE-eeccceeEEEEcC-------CC
Confidence 9999999999999999999999999986554 999999996542 23333 3445666666654 22
Q ss_pred ccccCCcccccCcccccCCCcEEEEeCCccc
Q 000743 556 SVLNGNTSVSSLLLPIHEDGTFRQSQIQNDE 586 (1313)
Q Consensus 556 S~l~g~~l~S~~lvs~s~DgtIr~Wdl~~~~ 586 (1313)
. .++..-+ ||.|-+||++...
T Consensus 533 ~-----elaVaTl-----dgqItf~d~~~~~ 553 (893)
T KOG0291|consen 533 K-----ELAVATL-----DGQITFFDIKEAV 553 (893)
T ss_pred C-----eEEEEEe-----cceEEEEEhhhce
Confidence 2 2222222 8999999987543
No 35
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.84 E-value=3e-20 Score=221.48 Aligned_cols=216 Identities=19% Similarity=0.273 Sum_probs=175.1
Q ss_pred eecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccc
Q 000743 320 DDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMV 399 (1313)
Q Consensus 320 ~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~ 399 (1313)
+.+.+|...|.++....+.. .+++|+.|.++++|+.+- +.....++....||++.|.+++++.
T Consensus 359 ~ii~GH~e~vlSL~~~~~g~----llat~sKD~svilWr~~~-----------~~~~~~~~a~~~gH~~svgava~~~-- 421 (775)
T KOG0319|consen 359 QIIPGHTEAVLSLDVWSSGD----LLATGSKDKSVILWRLNN-----------NCSKSLCVAQANGHTNSVGAVAGSK-- 421 (775)
T ss_pred EEEeCchhheeeeeecccCc----EEEEecCCceEEEEEecC-----------Ccchhhhhhhhcccccccceeeecc--
Confidence 37789999999964222222 599999999999954421 1122346677789999999999972
Q ss_pred cCCCCCccCcEEEEEeCCCcEEEEECCCCc-----eEE----EEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEE
Q 000743 400 GTAKGWSFNEVLVSGSMDCSIRIWDLGSGN-----LIT----VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVAL 470 (1313)
Q Consensus 400 s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~-----~l~----t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~L 470 (1313)
....+|+|+|.|+++++|++...+ .+. +...|...|++|+++|+ ..+|+|||.|++.+|
T Consensus 422 ------~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~n------dkLiAT~SqDktaKi 489 (775)
T KOG0319|consen 422 ------LGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPN------DKLIATGSQDKTAKI 489 (775)
T ss_pred ------cCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCC------CceEEecccccceee
Confidence 246899999999999999998622 111 33569999999999999 689999999999999
Q ss_pred EECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEeeeccccc
Q 000743 471 ASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISM 550 (1313)
Q Consensus 471 WDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~~~s~ 550 (1313)
|+++..+.+.++.||+-.|++|.|+|.++.++|++.| +||+||.+.+..+++++.||+..|.-+.|...
T Consensus 490 W~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD--------~TvKIW~is~fSClkT~eGH~~aVlra~F~~~--- 558 (775)
T KOG0319|consen 490 WDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGD--------KTVKIWSISTFSCLKTFEGHTSAVLRASFIRN--- 558 (775)
T ss_pred ecccCceEEEEeeCCccceEEEEeccccceeEeccCC--------ceEEEEEeccceeeeeecCccceeEeeeeeeC---
Confidence 9999999999999999999999999999999997765 99999999999999999999999988877541
Q ss_pred ceeecccccCCcccccCcccccCCCcEEEEeCCcccccc
Q 000743 551 NSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERGV 589 (1313)
Q Consensus 551 ~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~~~~~~~ 589 (1313)
|. . +++...||-+|+|++++.+..+
T Consensus 559 ----~~-----q-----liS~~adGliKlWnikt~eC~~ 583 (775)
T KOG0319|consen 559 ----GK-----Q-----LISAGADGLIKLWNIKTNECEM 583 (775)
T ss_pred ----Cc-----E-----EEeccCCCcEEEEeccchhhhh
Confidence 11 2 3444459999999999766554
No 36
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.84 E-value=7.9e-20 Score=204.98 Aligned_cols=214 Identities=17% Similarity=0.250 Sum_probs=173.1
Q ss_pred CCceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEe
Q 000743 317 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAH 396 (1313)
Q Consensus 317 ~~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafs 396 (1313)
..+..+.+|.+++.++.++..+.- ...+++++.|.++++|.|+.-.. .-+..+.-+||.+.|-++...
T Consensus 135 k~~~~~~Ght~~ik~v~~v~~n~~-~~~fvsas~Dqtl~Lw~~~~~~~-----------~~~~~~~~~GHk~~V~sVsv~ 202 (423)
T KOG0313|consen 135 KSIKTIVGHTGPIKSVAWVIKNSS-SCLFVSASMDQTLRLWKWNVGEN-----------KVKALKVCRGHKRSVDSVSVD 202 (423)
T ss_pred ceEEEEecCCcceeeeEEEecCCc-cceEEEecCCceEEEEEecCchh-----------hhhHHhHhcccccceeEEEec
Confidence 457788999999997655433331 11489999999999988863211 012334445999999999987
Q ss_pred ccccCCCCCccCcEEEEEeCCCcEEEEECC-------------------------CCceEEEEeccCCCEEEEEECCCCC
Q 000743 397 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLG-------------------------SGNLITVMHHHVAPVRQIILSPPQT 451 (1313)
Q Consensus 397 P~~s~pDGr~~~~~LaSGS~DgtIrVWDl~-------------------------tg~~l~t~~gH~~~V~sV~fsPd~~ 451 (1313)
++| ..++|||.|.++++|+.. +..++-++.||+++|.+|.|++.
T Consensus 203 -----~sg----tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~-- 271 (423)
T KOG0313|consen 203 -----SSG----TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA-- 271 (423)
T ss_pred -----CCC----CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCC--
Confidence 455 899999999999999932 12467789999999999999986
Q ss_pred CCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCc---E
Q 000743 452 EHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA---R 528 (1313)
Q Consensus 452 ~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~---l 528 (1313)
..++|+|.|++|+.||+.++.+..++.+.. ...++..+|..+.|++||.| ..+++||.|++. .
T Consensus 272 -----~v~yS~SwDHTIk~WDletg~~~~~~~~~k-sl~~i~~~~~~~Ll~~gssd--------r~irl~DPR~~~gs~v 337 (423)
T KOG0313|consen 272 -----TVIYSVSWDHTIKVWDLETGGLKSTLTTNK-SLNCISYSPLSKLLASGSSD--------RHIRLWDPRTGDGSVV 337 (423)
T ss_pred -----CceEeecccceEEEEEeecccceeeeecCc-ceeEeecccccceeeecCCC--------CceeecCCCCCCCcee
Confidence 679999999999999999999998887654 78899999999999997766 999999999853 3
Q ss_pred EEEEeCCCCceeEEeeecccccceeecccccCCcccccCcccccCCCcEEEEeCC
Q 000743 529 ERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 583 (1313)
Q Consensus 529 v~~L~GH~a~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~ 583 (1313)
.+.|.||++.|..+.||+......++|+. |+++|+||++
T Consensus 338 ~~s~~gH~nwVssvkwsp~~~~~~~S~S~----------------D~t~klWDvR 376 (423)
T KOG0313|consen 338 SQSLIGHKNWVSSVKWSPTNEFQLVSGSY----------------DNTVKLWDVR 376 (423)
T ss_pred EEeeecchhhhhheecCCCCceEEEEEec----------------CCeEEEEEec
Confidence 58899999999999999876666666664 9999999997
No 37
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=4.6e-20 Score=198.13 Aligned_cols=189 Identities=19% Similarity=0.216 Sum_probs=156.6
Q ss_pred EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEE
Q 000743 344 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 423 (1313)
Q Consensus 344 ~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVW 423 (1313)
.+++++.||++++ ||+. ....+++.++.|...|.++.|++ .+ .+.++++|.|+|||+|
T Consensus 75 ~~~~a~GDGSLrl--~d~~------------~~s~Pi~~~kEH~~EV~Svdwn~----~~----r~~~ltsSWD~TiKLW 132 (311)
T KOG0277|consen 75 QVIAASGDGSLRL--FDLT------------MPSKPIHKFKEHKREVYSVDWNT----VR----RRIFLTSSWDGTIKLW 132 (311)
T ss_pred eEEEEecCceEEE--eccC------------CCCcchhHHHhhhhheEEecccc----cc----ceeEEeeccCCceEee
Confidence 5889999999999 7632 23358999999999999999996 33 3778888999999999
Q ss_pred ECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEEcCCCC-EEE
Q 000743 424 DLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRG-YIA 502 (1313)
Q Consensus 424 Dl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~-~La 502 (1313)
|...++.+.+|.+|...|.+.+|+|.. .++|+|+|.|++.++||++.......++.|...+.++.|+.-.. .++
T Consensus 133 ~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~-----~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~ 207 (311)
T KOG0277|consen 133 DPNRPNSVQTFNGHNSCIYQAAFSPHI-----PNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLA 207 (311)
T ss_pred cCCCCcceEeecCCccEEEEEecCCCC-----CCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEE
Confidence 999999999999999999999999985 58999999999999999997655555999999999999998655 566
Q ss_pred EEecCCCCCCCCCCEEEEEECCC-CcEEEEEeCCCCceeEEeeecccccceeecccccCCcccccCcccccCCCcEEEEe
Q 000743 503 CLCRDHSRTSDAVDVLFIWDVKT-GARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 581 (1313)
Q Consensus 503 tgs~DlsGssD~DgtIrVWDlrT-G~lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wd 581 (1313)
||+.| +.||+||+|+ ..++.++.||.-.|..+.|++... +.+.+.+=|-|+|+||
T Consensus 208 Tg~vd--------~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~----------------~lLaSasYDmT~riw~ 263 (311)
T KOG0277|consen 208 TGGVD--------NLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHA----------------SLLASASYDMTVRIWD 263 (311)
T ss_pred ecCCC--------ceEEEEehhhccccceeecCCceEEEEEecCcchh----------------hHhhhccccceEEecc
Confidence 65544 9999999998 467899999999998887755222 2233344499999999
Q ss_pred CC
Q 000743 582 IQ 583 (1313)
Q Consensus 582 l~ 583 (1313)
..
T Consensus 264 ~~ 265 (311)
T KOG0277|consen 264 PE 265 (311)
T ss_pred cc
Confidence 75
No 38
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=4e-20 Score=222.25 Aligned_cols=159 Identities=21% Similarity=0.364 Sum_probs=141.4
Q ss_pred cccCCceEEEEeeeecccccCCE--EEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccc
Q 000743 322 FVHKEKIVSSSMVISESFYAPYA--IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMV 399 (1313)
Q Consensus 322 ~~~H~~~Vts~l~is~~~fsP~~--LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~ 399 (1313)
|......|.. ..|+|.+ ++++-++|.|.+ ||. +-+.++..|.+|.|+|..++|||
T Consensus 5 fEskSsRvKg------lsFHP~rPwILtslHsG~IQl--WDY-------------RM~tli~rFdeHdGpVRgv~FH~-- 61 (1202)
T KOG0292|consen 5 FESKSSRVKG------LSFHPKRPWILTSLHSGVIQL--WDY-------------RMGTLIDRFDEHDGPVRGVDFHP-- 61 (1202)
T ss_pred hhcccccccc------eecCCCCCEEEEeecCceeee--ehh-------------hhhhHHhhhhccCCccceeeecC--
Confidence 4444556666 6788874 899999999999 543 34467889999999999999996
Q ss_pred cCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEE
Q 000743 400 GTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVE 479 (1313)
Q Consensus 400 s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l 479 (1313)
.+.+++||++|.+|+||+..+.+|+.++.||-+.|+.+.||+. -..|+|+|+|.||+||+..+++|+
T Consensus 62 -------~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHhe------yPWIlSASDDQTIrIWNwqsr~~i 128 (1202)
T KOG0292|consen 62 -------TQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHE------YPWILSASDDQTIRIWNWQSRKCI 128 (1202)
T ss_pred -------CCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCC------CceEEEccCCCeEEEEeccCCceE
Confidence 3489999999999999999999999999999999999999998 356999999999999999999999
Q ss_pred EEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECC
Q 000743 480 RMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 524 (1313)
Q Consensus 480 ~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlr 524 (1313)
..+.||...|.|..|||..+.+++++.| .||||||+.
T Consensus 129 avltGHnHYVMcAqFhptEDlIVSaSLD--------QTVRVWDis 165 (1202)
T KOG0292|consen 129 AVLTGHNHYVMCAQFHPTEDLIVSASLD--------QTVRVWDIS 165 (1202)
T ss_pred EEEecCceEEEeeccCCccceEEEeccc--------ceEEEEeec
Confidence 9999999999999999999999998776 999999984
No 39
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.83 E-value=1e-19 Score=222.43 Aligned_cols=203 Identities=22% Similarity=0.271 Sum_probs=171.5
Q ss_pred ceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEecc
Q 000743 319 RDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRM 398 (1313)
Q Consensus 319 ~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~ 398 (1313)
...+.+|.+.|.++.+... .+.+++|+.|.++++ | |..+|+|..++.||.+.|.++...+
T Consensus 242 ~~~l~GH~g~V~~l~~~~~----~~~lvsgS~D~t~rv--W-------------d~~sg~C~~~l~gh~stv~~~~~~~- 301 (537)
T KOG0274|consen 242 LTRLVGHFGGVWGLAFPSG----GDKLVSGSTDKTERV--W-------------DCSTGECTHSLQGHTSSVRCLTIDP- 301 (537)
T ss_pred EeeccCCCCCceeEEEecC----CCEEEEEecCCcEEe--E-------------ecCCCcEEEEecCCCceEEEEEccC-
Confidence 3449999999999554442 236999999999999 5 4478899999999999999998753
Q ss_pred ccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcE
Q 000743 399 VGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRV 478 (1313)
Q Consensus 399 ~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~ 478 (1313)
.++++||.|.+|++||+.++.+++.+.+|.++|+++..+ +..+++|+.|++|++||+.++++
T Consensus 302 ----------~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--------~~~lvsgs~d~~v~VW~~~~~~c 363 (537)
T KOG0274|consen 302 ----------FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--------EPLLVSGSYDGTVKVWDPRTGKC 363 (537)
T ss_pred ----------ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--------CCEEEEEecCceEEEEEhhhcee
Confidence 688999999999999999999999999999999999997 26899999999999999999999
Q ss_pred EEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCC-cEEEEEeCCCCceeEEeeecccccceeeccc
Q 000743 479 ERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG-ARERVLRGTASHSMFDHFCKGISMNSISGSV 557 (1313)
Q Consensus 479 l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG-~lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS~ 557 (1313)
++++.||...|+++.+.+. .++++|+.| ++|++||++++ +++.++.+|.+-|....+
T Consensus 364 l~sl~gH~~~V~sl~~~~~-~~~~Sgs~D--------~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~------------- 421 (537)
T KOG0274|consen 364 LKSLSGHTGRVYSLIVDSE-NRLLSGSLD--------TTIKVWDLRTKRKCIHTLQGHTSLVSSLLL------------- 421 (537)
T ss_pred eeeecCCcceEEEEEecCc-ceEEeeeec--------cceEeecCCchhhhhhhhcCCccccccccc-------------
Confidence 9999999999999988776 789988877 99999999999 999999999987733321
Q ss_pred ccCCcccccCcccccCCCcEEEEeCCcccc
Q 000743 558 LNGNTSVSSLLLPIHEDGTFRQSQIQNDER 587 (1313)
Q Consensus 558 l~g~~l~S~~lvs~s~DgtIr~Wdl~~~~~ 587 (1313)
.++.+ ++.+.|++||+||....+.
T Consensus 422 -~~~~L-----vs~~aD~~Ik~WD~~~~~~ 445 (537)
T KOG0274|consen 422 -RDNFL-----VSSSADGTIKLWDAEEGEC 445 (537)
T ss_pred -cccee-----EeccccccEEEeecccCce
Confidence 11222 2333499999999865443
No 40
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=8e-19 Score=190.25 Aligned_cols=208 Identities=16% Similarity=0.247 Sum_probs=170.9
Q ss_pred CceecccCCceEEEEeeeecccccCC---EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEE-ecCCccEEEE
Q 000743 318 GRDDFVHKEKIVSSSMVISESFYAPY---AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYF-LGHTGAVLCL 393 (1313)
Q Consensus 318 ~~~~~~~H~~~Vts~l~is~~~fsP~---~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L-~GH~~~V~sL 393 (1313)
..+.+.+|.+.+.. ..|+|- .+++++.|..|++ |+.... .+..+...+ .+|+..|.++
T Consensus 6 ~~~~~~gh~~r~W~------~awhp~~g~ilAscg~Dk~vri--w~~~~~----------~s~~ck~vld~~hkrsVRsv 67 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWS------VAWHPGKGVILASCGTDKAVRI--WSTSSG----------DSWTCKTVLDDGHKRSVRSV 67 (312)
T ss_pred eEEeecCCCCcEEE------EEeccCCceEEEeecCCceEEE--EecCCC----------CcEEEEEeccccchheeeee
Confidence 46778899999998 666676 4899999999999 753211 223455555 4899999999
Q ss_pred EEeccccCCCCCccCcEEEEEeCCCcEEEEECCCC--ceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEE
Q 000743 394 AAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG--NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALA 471 (1313)
Q Consensus 394 afsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg--~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LW 471 (1313)
+|+| .| ++|++||.|.++.||.-..+ +++.++.||...|.+++|+++ |++|++++.|++|-+|
T Consensus 68 Awsp-----~g----~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~s------G~~LATCSRDKSVWiW 132 (312)
T KOG0645|consen 68 AWSP-----HG----RYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSAS------GNYLATCSRDKSVWIW 132 (312)
T ss_pred eecC-----CC----cEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCC------CCEEEEeeCCCeEEEE
Confidence 9995 55 89999999999999987644 689999999999999999999 8999999999999999
Q ss_pred ECCC---CcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECC-C--CcEEEEEeCCCCceeEEeee
Q 000743 472 SLET---LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK-T--GARERVLRGTASHSMFDHFC 545 (1313)
Q Consensus 472 DL~t---~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlr-T--G~lv~~L~GH~a~Vi~~~~c 545 (1313)
.+.. .+|...+.+|+..|..+.|||....|++++.| ++|++|+-. . -++++++.||...| ||
T Consensus 133 e~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYD--------nTIk~~~~~~dddW~c~~tl~g~~~TV----W~ 200 (312)
T KOG0645|consen 133 EIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYD--------NTIKVYRDEDDDDWECVQTLDGHENTV----WS 200 (312)
T ss_pred EecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccC--------CeEEEEeecCCCCeeEEEEecCccceE----EE
Confidence 9874 36888999999999999999999999997766 999999876 2 46899999999988 54
Q ss_pred cccccceeecccccCCcccccCcccccCCCcEEEEeCC
Q 000743 546 KGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 583 (1313)
Q Consensus 546 ~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~ 583 (1313)
..+.+ .| ..+++.+.|+|+++|.+.
T Consensus 201 ~~F~~---~G----------~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 201 LAFDN---IG----------SRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred EEecC---CC----------ceEEEecCCcceEeeeec
Confidence 43333 12 135566779999999854
No 41
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=2.5e-20 Score=208.07 Aligned_cols=221 Identities=23% Similarity=0.289 Sum_probs=184.7
Q ss_pred CCceecccCCceEEEEeeeecccccCCE--EEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEE
Q 000743 317 DGRDDFVHKEKIVSSSMVISESFYAPYA--IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLA 394 (1313)
Q Consensus 317 ~~~~~~~~H~~~Vts~l~is~~~fsP~~--LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLa 394 (1313)
...+.+.+|...|+. +.|+|+. .++++.|++|++ || ..++++...|+||++.|.++.
T Consensus 99 ~l~~~l~g~r~~vt~------v~~hp~~~~v~~as~d~tikv--~D-------------~~tg~~e~~LrGHt~sv~di~ 157 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTR------VIFHPSEALVVSASEDATIKV--FD-------------TETGELERSLRGHTDSVFDIS 157 (406)
T ss_pred Cchhhhhccccceee------eeeccCceEEEEecCCceEEE--EE-------------ccchhhhhhhhccccceeEEE
Confidence 456778899999999 6667763 677788999999 54 367788999999999999999
Q ss_pred EeccccCCCCCccCcEEEEEeCCCcEEEEECCC-CceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEEC
Q 000743 395 AHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS-GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASL 473 (1313)
Q Consensus 395 fsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~t-g~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL 473 (1313)
|+ .-| .+++++|.|-.+++||..+ .++++.+.+|...|.++.|-|. |++|+|++.|++|+.|++
T Consensus 158 ~~-----a~G----k~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~------gd~ilS~srD~tik~We~ 222 (406)
T KOG0295|consen 158 FD-----ASG----KYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPL------GDHILSCSRDNTIKAWEC 222 (406)
T ss_pred Ee-----cCc----cEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEec------CCeeeecccccceeEEec
Confidence 98 234 8999999999999999986 6788999999999999999998 799999999999999999
Q ss_pred CCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEeeeccccccee
Q 000743 474 ETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSI 553 (1313)
Q Consensus 474 ~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~~~s~~iv 553 (1313)
.++.|+++|++|+..|..+..+.||..+++++.| .++++|-+.++++...+.+|.-.|-++.|.++.....+
T Consensus 223 ~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~d--------qtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i 294 (406)
T KOG0295|consen 223 DTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSND--------QTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSI 294 (406)
T ss_pred ccceeEEeccCchHhEEEEEecCCeeEEEecCCC--------ceEEEEEeccchhhhhhhccccceEEEEecccccCcch
Confidence 9999999999999999999999999999987766 99999999999999999999999877777664332222
Q ss_pred ecccccCCcccccCcccccCCCcEEEEeCC
Q 000743 554 SGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 583 (1313)
Q Consensus 554 SGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~ 583 (1313)
++. .++......+.+.++|+|||+||+.
T Consensus 295 ~~a--t~~~~~~~~l~s~SrDktIk~wdv~ 322 (406)
T KOG0295|consen 295 SEA--TGSTNGGQVLGSGSRDKTIKIWDVS 322 (406)
T ss_pred hhc--cCCCCCccEEEeecccceEEEEecc
Confidence 111 1111112245667889999999986
No 42
>PTZ00421 coronin; Provisional
Probab=99.82 E-value=1e-18 Score=212.95 Aligned_cols=171 Identities=17% Similarity=0.220 Sum_probs=141.0
Q ss_pred EEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCC-------ceEEEEeccCCCEEEEEECCCCCCC
Q 000743 381 QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG-------NLITVMHHHVAPVRQIILSPPQTEH 453 (1313)
Q Consensus 381 ~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg-------~~l~t~~gH~~~V~sV~fsPd~~~~ 453 (1313)
..+.||++.|++++|+| .|+ ++|+|||.|++|++||+.++ +++..+.+|...|.+++|+|+.
T Consensus 69 ~~l~GH~~~V~~v~fsP----~d~----~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~--- 137 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNP----FDP----QKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA--- 137 (493)
T ss_pred ceEeCCCCCEEEEEEcC----CCC----CEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC---
Confidence 35789999999999996 244 79999999999999999765 4678899999999999999983
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEe
Q 000743 454 PWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 533 (1313)
Q Consensus 454 ~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~ 533 (1313)
+++|+|++.|++|+|||+++++.+..+.+|...|.+++|+|++.+|++++.| ++|++||+++++.+..+.
T Consensus 138 --~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~D--------g~IrIwD~rsg~~v~tl~ 207 (493)
T PTZ00421 138 --MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKD--------KKLNIIDPRDGTIVSSVE 207 (493)
T ss_pred --CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCC--------CEEEEEECCCCcEEEEEe
Confidence 3689999999999999999999999999999999999999999999998877 999999999999999999
Q ss_pred CCCCcee-EEeeecccccceeecccccCCcccccCcccccCCCcEEEEeCCcc
Q 000743 534 GTASHSM-FDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQND 585 (1313)
Q Consensus 534 GH~a~Vi-~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~~~ 585 (1313)
+|..... .+.|+.... .+++.. .+-+.|++|++||+++.
T Consensus 208 ~H~~~~~~~~~w~~~~~-~ivt~G------------~s~s~Dr~VklWDlr~~ 247 (493)
T PTZ00421 208 AHASAKSQRCLWAKRKD-LIITLG------------CSKSQQRQIMLWDTRKM 247 (493)
T ss_pred cCCCCcceEEEEcCCCC-eEEEEe------------cCCCCCCeEEEEeCCCC
Confidence 9987543 333443211 122211 01235899999999753
No 43
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=1.9e-19 Score=191.50 Aligned_cols=208 Identities=20% Similarity=0.200 Sum_probs=179.3
Q ss_pred CCCCceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEE
Q 000743 315 AGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLA 394 (1313)
Q Consensus 315 ~~~~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLa 394 (1313)
.+..+.++.+|..+|.......++. .+++|+.|..+.+ | |+.+|+..+.|+||.+.|+.+.
T Consensus 48 rg~liktYsghG~EVlD~~~s~Dns----kf~s~GgDk~v~v--w-------------DV~TGkv~Rr~rgH~aqVNtV~ 108 (307)
T KOG0316|consen 48 RGALIKTYSGHGHEVLDAALSSDNS----KFASCGGDKAVQV--W-------------DVNTGKVDRRFRGHLAQVNTVR 108 (307)
T ss_pred ccceeeeecCCCceeeecccccccc----ccccCCCCceEEE--E-------------EcccCeeeeecccccceeeEEE
Confidence 3456889999999998865555555 7899999999988 5 6789999999999999999999
Q ss_pred EeccccCCCCCccCcEEEEEeCCCcEEEEECCC--CceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEE
Q 000743 395 AHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS--GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALAS 472 (1313)
Q Consensus 395 fsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~t--g~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWD 472 (1313)
|+. ....++|||.|.++|+||.++ .++++.+......|.++.... +.|+.||.||+++.||
T Consensus 109 fNe---------esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~--------heIvaGS~DGtvRtyd 171 (307)
T KOG0316|consen 109 FNE---------ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE--------HEIVAGSVDGTVRTYD 171 (307)
T ss_pred ecC---------cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc--------cEEEeeccCCcEEEEE
Confidence 984 347999999999999999985 578999998899999999864 5799999999999999
Q ss_pred CCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEeeeccccc-c
Q 000743 473 LETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISM-N 551 (1313)
Q Consensus 473 L~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~~~s~-~ 551 (1313)
+|.|+....+-+| +|++++|+++++..+.++.| +++++-|-.||++++.+.||.+.......|...+. .
T Consensus 172 iR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~--------stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdth 241 (307)
T KOG0316|consen 172 IRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLD--------STLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTH 241 (307)
T ss_pred eecceeehhhcCC--cceeEEecCCCCEEEEeecc--------ceeeecccchhHHHHHhcccccceeeeeeeeccccee
Confidence 9999988877777 79999999999999998887 99999999999999999999999877777764443 3
Q ss_pred eeecccccCCcccccCcccccCCCcEEEEeCCc
Q 000743 552 SISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 584 (1313)
Q Consensus 552 ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~~ 584 (1313)
+++||. ||.+.+|++-.
T Consensus 242 V~sgSE----------------DG~Vy~wdLvd 258 (307)
T KOG0316|consen 242 VFSGSE----------------DGKVYFWDLVD 258 (307)
T ss_pred EEeccC----------------CceEEEEEecc
Confidence 556654 99999999864
No 44
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.82 E-value=6.9e-19 Score=188.65 Aligned_cols=208 Identities=19% Similarity=0.242 Sum_probs=162.5
Q ss_pred CceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEec
Q 000743 318 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 397 (1313)
Q Consensus 318 ~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP 397 (1313)
+..++......|+++...++-. .+.+.....|++ +|+... ...++.+|.+|++-|+++.|.
T Consensus 32 C~rTiqh~dsqVNrLeiTpdk~-----~LAaa~~qhvRl--yD~~S~-----------np~Pv~t~e~h~kNVtaVgF~- 92 (311)
T KOG0315|consen 32 CSRTIQHPDSQVNRLEITPDKK-----DLAAAGNQHVRL--YDLNSN-----------NPNPVATFEGHTKNVTAVGFQ- 92 (311)
T ss_pred EEEEEecCccceeeEEEcCCcc-----hhhhccCCeeEE--EEccCC-----------CCCceeEEeccCCceEEEEEe-
Confidence 4556666667788844444433 444456788999 554222 224799999999999999998
Q ss_pred cccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCC-
Q 000743 398 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL- 476 (1313)
Q Consensus 398 ~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~- 476 (1313)
.|| ++++|||.||++||||++...+-+.|. |..+|++|..+|+ ...|+++..+|.|++||+.+.
T Consensus 93 ----~dg----rWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpn------QteLis~dqsg~irvWDl~~~~ 157 (311)
T KOG0315|consen 93 ----CDG----RWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPN------QTELISGDQSGNIRVWDLGENS 157 (311)
T ss_pred ----ecC----eEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCC------cceEEeecCCCcEEEEEccCCc
Confidence 566 999999999999999999987777776 8899999999998 356888888888888888653
Q ss_pred ------------------------------------------------cEEEEecCCCCCcEEEEEcCCCCEEEEEecCC
Q 000743 477 ------------------------------------------------RVERMFPGHPNYPAKVVWDCPRGYIACLCRDH 508 (1313)
Q Consensus 477 ------------------------------------------------~~l~~l~gH~~~V~sVafsPdg~~Latgs~Dl 508 (1313)
+++.+++.|...+..+.++|+++||++++.|
T Consensus 158 c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssd- 236 (311)
T KOG0315|consen 158 CTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSD- 236 (311)
T ss_pred cccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCC-
Confidence 2344667888899999999999999997776
Q ss_pred CCCCCCCCEEEEEECCCC-cEEEEEeCCCCceeEEeeecccccceeecccccCCcccccCcccccCCCcEEEEeCCc
Q 000743 509 SRTSDAVDVLFIWDVKTG-ARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 584 (1313)
Q Consensus 509 sGssD~DgtIrVWDlrTG-~lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~~ 584 (1313)
.+++||+.++- ++...++||+..+..+.|+.+ +..+++| ++|+++|+|++..
T Consensus 237 -------ktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~d-g~YlvTa----------------ssd~~~rlW~~~~ 289 (311)
T KOG0315|consen 237 -------KTVKIWNTDDFFKLELVLTGHQRWVWDCAFSAD-GEYLVTA----------------SSDHTARLWDLSA 289 (311)
T ss_pred -------ceEEEEecCCceeeEEEeecCCceEEeeeeccC-ccEEEec----------------CCCCceeeccccc
Confidence 99999999987 788999999999977767531 2224444 4599999999864
No 45
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.82 E-value=5.2e-19 Score=216.27 Aligned_cols=195 Identities=23% Similarity=0.283 Sum_probs=165.4
Q ss_pred CCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEE-EecCCccEEEEEEeccccCCC
Q 000743 325 KEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQY-FLGHTGAVLCLAAHRMVGTAK 403 (1313)
Q Consensus 325 H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~-L~GH~~~V~sLafsP~~s~pD 403 (1313)
|...+.+ ..+.+..+++|+.|++|.+ |+. .++..+.. +.||.+.|+++++..
T Consensus 207 ~~~~~~~------~q~~~~~~~~~s~~~tl~~--~~~-------------~~~~~i~~~l~GH~g~V~~l~~~~------ 259 (537)
T KOG0274|consen 207 DDHVVLC------LQLHDGFFKSGSDDSTLHL--WDL-------------NNGYLILTRLVGHFGGVWGLAFPS------ 259 (537)
T ss_pred Ccchhhh------heeecCeEEecCCCceeEE--eec-------------ccceEEEeeccCCCCCceeEEEec------
Confidence 4455555 4555567999999999977 653 44566666 999999999999962
Q ss_pred CCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEec
Q 000743 404 GWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFP 483 (1313)
Q Consensus 404 Gr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~ 483 (1313)
....|+|||.|+++++||..+|+|.+++.+|.+.|.++...+. .+++||.|.+|++|+++++.++..+.
T Consensus 260 ---~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~--------~~~sgs~D~tVkVW~v~n~~~l~l~~ 328 (537)
T KOG0274|consen 260 ---GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPF--------LLVSGSRDNTVKVWDVTNGACLNLLR 328 (537)
T ss_pred ---CCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCc--------eEeeccCCceEEEEeccCcceEEEec
Confidence 2489999999999999999999999999999999999998764 68889999999999999999999999
Q ss_pred CCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEeeecccccceeecccccCCcc
Q 000743 484 GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTS 563 (1313)
Q Consensus 484 gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS~l~g~~l 563 (1313)
+|.++|.++..+ ++++++|+.| ++|+|||+++++++++++||+..|....+-.. ..+++|+.
T Consensus 329 ~h~~~V~~v~~~--~~~lvsgs~d--------~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~------ 390 (537)
T KOG0274|consen 329 GHTGPVNCVQLD--EPLLVSGSYD--------GTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE--NRLLSGSL------ 390 (537)
T ss_pred cccccEEEEEec--CCEEEEEecC--------ceEEEEEhhhceeeeeecCCcceEEEEEecCc--ceEEeeee------
Confidence 999999999997 8899998877 99999999999999999999999977643221 34556654
Q ss_pred cccCcccccCCCcEEEEeCCcc
Q 000743 564 VSSLLLPIHEDGTFRQSQIQND 585 (1313)
Q Consensus 564 ~S~~lvs~s~DgtIr~Wdl~~~ 585 (1313)
|++||+||+.+.
T Consensus 391 ----------D~~IkvWdl~~~ 402 (537)
T KOG0274|consen 391 ----------DTTIKVWDLRTK 402 (537)
T ss_pred ----------ccceEeecCCch
Confidence 999999999754
No 46
>PTZ00420 coronin; Provisional
Probab=99.80 E-value=4.4e-18 Score=208.99 Aligned_cols=144 Identities=19% Similarity=0.248 Sum_probs=124.2
Q ss_pred CceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCC--------ceEEEEeccCCCEEEEEEC
Q 000743 376 SHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG--------NLITVMHHHVAPVRQIILS 447 (1313)
Q Consensus 376 tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg--------~~l~t~~gH~~~V~sV~fs 447 (1313)
...++..+.||.+.|++++|+| .++ ++|+|||.|++|++||+.++ .++..+.+|...|.+++|+
T Consensus 63 r~~~v~~L~gH~~~V~~lafsP----~~~----~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~ 134 (568)
T PTZ00420 63 RKPPVIKLKGHTSSILDLQFNP----CFS----EILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWN 134 (568)
T ss_pred CCceEEEEcCCCCCEEEEEEcC----CCC----CEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEEC
Confidence 3457888999999999999996 123 79999999999999999864 2455788999999999999
Q ss_pred CCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCc
Q 000743 448 PPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 527 (1313)
Q Consensus 448 Pd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~ 527 (1313)
|++ ...++|++.|++|++||+++++.+..+. |...|.+++|+|+|.+|+++|.| ++|+|||+++++
T Consensus 135 P~g-----~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D--------~~IrIwD~Rsg~ 200 (568)
T PTZ00420 135 PMN-----YYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVG--------KHMHIIDPRKQE 200 (568)
T ss_pred CCC-----CeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecC--------CEEEEEECCCCc
Confidence 983 2456899999999999999998887776 55789999999999999998876 999999999999
Q ss_pred EEEEEeCCCCceeE
Q 000743 528 RERVLRGTASHSMF 541 (1313)
Q Consensus 528 lv~~L~GH~a~Vi~ 541 (1313)
.+.++.+|.+.+..
T Consensus 201 ~i~tl~gH~g~~~s 214 (568)
T PTZ00420 201 IASSFHIHDGGKNT 214 (568)
T ss_pred EEEEEecccCCcee
Confidence 99999999987643
No 47
>PTZ00420 coronin; Provisional
Probab=99.80 E-value=1.1e-17 Score=205.41 Aligned_cols=222 Identities=11% Similarity=0.071 Sum_probs=159.8
Q ss_pred CceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEec
Q 000743 318 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 397 (1313)
Q Consensus 318 ~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP 397 (1313)
....+.+|.+.|.++.+.+. .+..+++|+.||.|++ |++....... .....+...+.+|.+.|.+++|+|
T Consensus 66 ~v~~L~gH~~~V~~lafsP~---~~~lLASgS~DgtIrI--WDi~t~~~~~-----~~i~~p~~~L~gH~~~V~sVaf~P 135 (568)
T PTZ00420 66 PVIKLKGHTSSILDLQFNPC---FSEILASGSEDLTIRV--WEIPHNDESV-----KEIKDPQCILKGHKKKISIIDWNP 135 (568)
T ss_pred eEEEEcCCCCCEEEEEEcCC---CCCEEEEEeCCCeEEE--EECCCCCccc-----cccccceEEeecCCCcEEEEEECC
Confidence 46778999999999443332 1226999999999999 6643211000 001134567899999999999996
Q ss_pred cccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCc
Q 000743 398 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR 477 (1313)
Q Consensus 398 ~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~ 477 (1313)
++ ..+++||+.|++|++||+++++.+..+. |...|.++.|+|+ |.+|++++.|++|++||+++++
T Consensus 136 -----~g---~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswspd------G~lLat~s~D~~IrIwD~Rsg~ 200 (568)
T PTZ00420 136 -----MN---YYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIK------GNLLSGTCVGKHMHIIDPRKQE 200 (568)
T ss_pred -----CC---CeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCC------CCEEEEEecCCEEEEEECCCCc
Confidence 33 3467899999999999999999888886 6788999999999 7899999999999999999999
Q ss_pred EEEEecCCCCCcE-----EEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCC-CcEEEEEeCCCCceeEEeeecccccc
Q 000743 478 VERMFPGHPNYPA-----KVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT-GARERVLRGTASHSMFDHFCKGISMN 551 (1313)
Q Consensus 478 ~l~~l~gH~~~V~-----sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrT-G~lv~~L~GH~a~Vi~~~~c~~~s~~ 551 (1313)
.+..+.+|.+.+. ...|++++.+|++++.| +..+ ++|+|||+++ +..+..+..+...-...-+.++.
T Consensus 201 ~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d--~~~~--R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~--- 273 (568)
T PTZ00420 201 IASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFS--KNNM--REMKLWDLKNTTSALVTMSIDNASAPLIPHYDES--- 273 (568)
T ss_pred EEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcC--CCCc--cEEEEEECCCCCCceEEEEecCCccceEEeeeCC---
Confidence 9999999987653 23456899999998876 3333 6899999995 56666654443322111111111
Q ss_pred eeecccccCCcccccCcccccCCCcEEEEeCC
Q 000743 552 SISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 583 (1313)
Q Consensus 552 ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~ 583 (1313)
+|. .++..+.|++||+|++.
T Consensus 274 --tg~----------l~lsGkGD~tIr~~e~~ 293 (568)
T PTZ00420 274 --TGL----------IYLIGKGDGNCRYYQHS 293 (568)
T ss_pred --CCC----------EEEEEECCCeEEEEEcc
Confidence 111 12233359999999985
No 48
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.80 E-value=7.8e-17 Score=174.10 Aligned_cols=205 Identities=23% Similarity=0.298 Sum_probs=167.0
Q ss_pred CceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEec
Q 000743 318 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 397 (1313)
Q Consensus 318 ~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP 397 (1313)
....+..|...+.++.+.++.. .+++++.||.+.+ |++ .+++....+.+|.+.|.++.|+|
T Consensus 85 ~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~i~~--~~~-------------~~~~~~~~~~~~~~~i~~~~~~~ 145 (289)
T cd00200 85 CVRTLTGHTSYVSSVAFSPDGR----ILSSSSRDKTIKV--WDV-------------ETGKCLTTLRGHTDWVNSVAFSP 145 (289)
T ss_pred ceEEEeccCCcEEEEEEcCCCC----EEEEecCCCeEEE--EEC-------------CCcEEEEEeccCCCcEEEEEEcC
Confidence 3456667888888855544422 3556656999999 543 34567788889999999999985
Q ss_pred cccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCc
Q 000743 398 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR 477 (1313)
Q Consensus 398 ~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~ 477 (1313)
++ .++++++.|+.|++||+++++++..+..|...|.++.|+|+ ++.+++++.|+.+++||+++++
T Consensus 146 -----~~----~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~------~~~l~~~~~~~~i~i~d~~~~~ 210 (289)
T cd00200 146 -----DG----TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPD------GEKLLSSSSDGTIKLWDLSTGK 210 (289)
T ss_pred -----cC----CEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCC------cCEEEEecCCCcEEEEECCCCc
Confidence 33 78888888999999999999999999999999999999999 6788899999999999999999
Q ss_pred EEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEeeecccccceeeccc
Q 000743 478 VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSV 557 (1313)
Q Consensus 478 ~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS~ 557 (1313)
.+..+..|...+.+++|+|++.++++++.| +.|++||+++++....+.+|...+..+.|.+. ..
T Consensus 211 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--------~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~------- 274 (289)
T cd00200 211 CLGTLRGHENGVNSVAFSPDGYLLASGSED--------GTIRVWDLRTGECVQTLSGHTNSVTSLAWSPD-GK------- 274 (289)
T ss_pred eecchhhcCCceEEEEEcCCCcEEEEEcCC--------CcEEEEEcCCceeEEEccccCCcEEEEEECCC-CC-------
Confidence 999998899899999999998888876655 99999999999999999999988877766542 11
Q ss_pred ccCCcccccCcccccCCCcEEEEe
Q 000743 558 LNGNTSVSSLLLPIHEDGTFRQSQ 581 (1313)
Q Consensus 558 l~g~~l~S~~lvs~s~DgtIr~Wd 581 (1313)
.++..+.|+++++|+
T Consensus 275 ---------~l~~~~~d~~i~iw~ 289 (289)
T cd00200 275 ---------RLASGSADGTIRIWD 289 (289)
T ss_pred ---------EEEEecCCCeEEecC
Confidence 123334599999996
No 49
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.80 E-value=1.5e-19 Score=207.73 Aligned_cols=208 Identities=17% Similarity=0.254 Sum_probs=169.5
Q ss_pred CCceecccCCceEEEEeeee-cccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEE
Q 000743 317 DGRDDFVHKEKIVSSSMVIS-ESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAA 395 (1313)
Q Consensus 317 ~~~~~~~~H~~~Vts~l~is-~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLaf 395 (1313)
..+..+.+|+..|+++.+.+ ... .+++|+.|+.|+| |++. ..+.++++|.||..+|.+++|
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~h----LlLS~gmD~~vkl--W~vy------------~~~~~lrtf~gH~k~Vrd~~~ 266 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGH----LLLSGGMDGLVKL--WNVY------------DDRRCLRTFKGHRKPVRDASF 266 (503)
T ss_pred hheeeccCCccccchhhhccceee----EEEecCCCceEEE--EEEe------------cCcceehhhhcchhhhhhhhc
Confidence 45778999999999944333 222 4889999999999 6531 246899999999999999999
Q ss_pred eccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCC
Q 000743 396 HRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET 475 (1313)
Q Consensus 396 sP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t 475 (1313)
+ .+| ..++|+|.|+++++||++||+++.+|. -...++++.|+|++ .+.|++|+.|+.|+.||+|+
T Consensus 267 s-----~~g----~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~-----~n~fl~G~sd~ki~~wDiRs 331 (503)
T KOG0282|consen 267 N-----NCG----TSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDN-----QNIFLVGGSDKKIRQWDIRS 331 (503)
T ss_pred c-----ccC----CeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCC-----CcEEEEecCCCcEEEEeccc
Confidence 8 466 889999999999999999999999997 55678999999995 38999999999999999998
Q ss_pred CcEEE---------------------------------------------------------------------------
Q 000743 476 LRVER--------------------------------------------------------------------------- 480 (1313)
Q Consensus 476 ~~~l~--------------------------------------------------------------------------- 480 (1313)
++.++
T Consensus 332 ~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~i 411 (503)
T KOG0282|consen 332 GKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAI 411 (503)
T ss_pred hHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEE
Confidence 72111
Q ss_pred -------------EecCCC--CCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEeee
Q 000743 481 -------------MFPGHP--NYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFC 545 (1313)
Q Consensus 481 -------------~l~gH~--~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~c 545 (1313)
.|.||. +.-..+.|+|||.+|++|..| |.+++||-+|-+++..+++|...++.+.|.
T Consensus 412 fs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsd--------G~v~~wdwkt~kl~~~lkah~~~ci~v~wH 483 (503)
T KOG0282|consen 412 FSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSD--------GKVNFWDWKTTKLVSKLKAHDQPCIGVDWH 483 (503)
T ss_pred EecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCC--------ccEEEeechhhhhhhccccCCcceEEEEec
Confidence 233563 345678999999999986555 999999999999999999999999999887
Q ss_pred cccccceeecccccCCcccccCcccccCCCcEEEEe
Q 000743 546 KGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 581 (1313)
Q Consensus 546 ~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wd 581 (1313)
+.....+++++. ||.||+|+
T Consensus 484 P~e~Skvat~~w----------------~G~Ikiwd 503 (503)
T KOG0282|consen 484 PVEPSKVATCGW----------------DGLIKIWD 503 (503)
T ss_pred CCCcceeEeccc----------------CceeEecC
Confidence 754444555543 89999996
No 50
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.79 E-value=3e-17 Score=177.27 Aligned_cols=206 Identities=25% Similarity=0.372 Sum_probs=170.2
Q ss_pred eecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccc
Q 000743 320 DDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMV 399 (1313)
Q Consensus 320 ~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~ 399 (1313)
..+.+|...|+++.+.++.. .+++|+.||.+.+ |+. .+++....+.+|...+.++.|+|
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~----~l~~~~~~g~i~i--~~~-------------~~~~~~~~~~~~~~~i~~~~~~~-- 61 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGK----LLATGSGDGTIKV--WDL-------------ETGELLRTLKGHTGPVRDVAASA-- 61 (289)
T ss_pred hHhcccCCCEEEEEEcCCCC----EEEEeecCcEEEE--EEe-------------eCCCcEEEEecCCcceeEEEECC--
Confidence 46779999999955544433 5889999999999 442 33346778889999999999984
Q ss_pred cCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEE
Q 000743 400 GTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVE 479 (1313)
Q Consensus 400 s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l 479 (1313)
++ +.+++++.|+.|++||+.+++.+..+..|...|.++.|+|+ +.++++++.|+.+++||+++++..
T Consensus 62 ---~~----~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~ 128 (289)
T cd00200 62 ---DG----TYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPD------GRILSSSSRDKTIKVWDVETGKCL 128 (289)
T ss_pred ---CC----CEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCC------CCEEEEecCCCeEEEEECCCcEEE
Confidence 34 79999999999999999999999999999999999999998 578888888999999999999999
Q ss_pred EEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEeeecccccceeeccccc
Q 000743 480 RMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLN 559 (1313)
Q Consensus 480 ~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS~l~ 559 (1313)
..+..|...+.+++|+|++.++++++.| +.|++||+++++.+..+.+|...+....+.+.. ..
T Consensus 129 ~~~~~~~~~i~~~~~~~~~~~l~~~~~~--------~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~-------- 191 (289)
T cd00200 129 TTLRGHTDWVNSVAFSPDGTFVASSSQD--------GTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDG-EK-------- 191 (289)
T ss_pred EEeccCCCcEEEEEEcCcCCEEEEEcCC--------CcEEEEEccccccceeEecCccccceEEECCCc-CE--------
Confidence 9999999999999999999999886655 999999999999999999999888776665411 11
Q ss_pred CCcccccCcccccCCCcEEEEeCCc
Q 000743 560 GNTSVSSLLLPIHEDGTFRQSQIQN 584 (1313)
Q Consensus 560 g~~l~S~~lvs~s~DgtIr~Wdl~~ 584 (1313)
++..+.|+.+++|+++.
T Consensus 192 --------l~~~~~~~~i~i~d~~~ 208 (289)
T cd00200 192 --------LLSSSSDGTIKLWDLST 208 (289)
T ss_pred --------EEEecCCCcEEEEECCC
Confidence 22223388999999864
No 51
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.78 E-value=2.2e-17 Score=213.12 Aligned_cols=217 Identities=14% Similarity=0.165 Sum_probs=171.0
Q ss_pred ecccCCceEEEEeeeecccccCC--EEEEEEcCCcEEEEEeeccc----------------------------------c
Q 000743 321 DFVHKEKIVSSSMVISESFYAPY--AIVYGFFSGEIEVIQFDLFE----------------------------------R 364 (1313)
Q Consensus 321 ~~~~H~~~Vts~l~is~~~fsP~--~LvsGs~DGsI~I~~wdll~----------------------------------~ 364 (1313)
.+..|...|++ ..|+|+ .+++|+.||.|++|...... .
T Consensus 478 ~~~~~~~~V~~------i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~ 551 (793)
T PLN00181 478 DLLNSSNLVCA------IGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASS 551 (793)
T ss_pred cccCCCCcEEE------EEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEE
Confidence 34568888988 455554 48999999999995421100 0
Q ss_pred -CCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEE
Q 000743 365 -HNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQ 443 (1313)
Q Consensus 365 -~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~s 443 (1313)
.+...+.||+.+++.+..+.+|.+.|++++|+| ++| .+|+||+.|++|++||++++.++..+..| ..|.+
T Consensus 552 ~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p----~~~----~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~ 622 (793)
T PLN00181 552 NFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSS----ADP----TLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICC 622 (793)
T ss_pred eCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcC----CCC----CEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEE
Confidence 022335689888999999999999999999986 455 89999999999999999999999998854 68999
Q ss_pred EEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCc-EEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEE
Q 000743 444 IILSPPQTEHPWSDCFLSVGEDFSVALASLETLR-VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 522 (1313)
Q Consensus 444 V~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~-~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWD 522 (1313)
+.|++.. +..|++|+.|++|++||+++.+ ++..+.+|...|.++.|. ++.+|++++.| ++|++||
T Consensus 623 v~~~~~~-----g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D--------~~ikiWd 688 (793)
T PLN00181 623 VQFPSES-----GRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTD--------NTLKLWD 688 (793)
T ss_pred EEEeCCC-----CCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECC--------CEEEEEe
Confidence 9996542 6899999999999999998766 577888999999999997 67899998876 9999999
Q ss_pred CCCC------cEEEEEeCCCCceeEEeeecccccceeecccccCCcccccCcccccCCCcEEEEeCC
Q 000743 523 VKTG------ARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 583 (1313)
Q Consensus 523 lrTG------~lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~ 583 (1313)
++++ .+++.+.||...+..+.|.+. ...+++| +.|+++++|+..
T Consensus 689 ~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~-~~~lasg----------------s~D~~v~iw~~~ 738 (793)
T PLN00181 689 LSMSISGINETPLHSFMGHTNVKNFVGLSVS-DGYIATG----------------SETNEVFVYHKA 738 (793)
T ss_pred CCCCccccCCcceEEEcCCCCCeeEEEEcCC-CCEEEEE----------------eCCCEEEEEECC
Confidence 9853 578899999988766655431 1123333 349999999965
No 52
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=7.6e-18 Score=204.75 Aligned_cols=216 Identities=19% Similarity=0.137 Sum_probs=164.1
Q ss_pred ceecc-cCCceEEEEeeeecccccCC--EEEEEEcCCcEEEEEeeccc------cC---------------------CC-
Q 000743 319 RDDFV-HKEKIVSSSMVISESFYAPY--AIVYGFFSGEIEVIQFDLFE------RH---------------------NS- 367 (1313)
Q Consensus 319 ~~~~~-~H~~~Vts~l~is~~~fsP~--~LvsGs~DGsI~I~~wdll~------~~---------------------~~- 367 (1313)
.+.+. .|.+.|.+ ..|+++ .|++|+.||.|+| |.... .. ..
T Consensus 259 ~Qe~~~ah~gaIw~------mKFS~DGKyLAsaGeD~virV--WkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~ 330 (712)
T KOG0283|consen 259 VQEISNAHKGAIWA------MKFSHDGKYLASAGEDGVIRV--WKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEE 330 (712)
T ss_pred eeccccccCCcEEE------EEeCCCCceeeecCCCceEEE--EEEeccchhcccccccchhhhhhhhccccCccccccc
Confidence 34555 89999999 455555 3999999999999 54333 00 00
Q ss_pred -----C------CCccc--------cCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCC
Q 000743 368 -----P------GASLK--------VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG 428 (1313)
Q Consensus 368 -----~------~~~wd--------v~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg 428 (1313)
. ..... .-..+++..|.||.+.|.+|.|+ ..++|+|+|+|+|||+|++...
T Consensus 331 ~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS----------Kn~fLLSSSMDKTVRLWh~~~~ 400 (712)
T KOG0283|consen 331 KISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWS----------KNNFLLSSSMDKTVRLWHPGRK 400 (712)
T ss_pred cccccccccccccCCccccCCCccccccccchhhhhccchhheecccc----------cCCeeEeccccccEEeecCCCc
Confidence 0 00000 01235678889999999999998 3479999999999999999999
Q ss_pred ceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCC
Q 000743 429 NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDH 508 (1313)
Q Consensus 429 ~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~Dl 508 (1313)
+|+..|. |.+-|+||+|+|.. .++|+|||-|+.||||++...+.+.-..-+ .-|++++|.|+|++.++|+.+
T Consensus 401 ~CL~~F~-HndfVTcVaFnPvD-----DryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~- 472 (712)
T KOG0283|consen 401 ECLKVFS-HNDFVTCVAFNPVD-----DRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFN- 472 (712)
T ss_pred ceeeEEe-cCCeeEEEEecccC-----CCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEec-
Confidence 9999998 99999999999974 589999999999999999887777655555 589999999999999999887
Q ss_pred CCCCCCCCEEEEEECCCCcEEEEEe--CC------CCceeEEeeecccccceeecccccCCcccccCcccccCCCcEEEE
Q 000743 509 SRTSDAVDVLFIWDVKTGARERVLR--GT------ASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQS 580 (1313)
Q Consensus 509 sGssD~DgtIrVWDlrTG~lv~~L~--GH------~a~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~W 580 (1313)
|.+++|+.+.-+++...+ -| ...|+..+|++.... -++=.+.|..||+.
T Consensus 473 -------G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~----------------~vLVTSnDSrIRI~ 529 (712)
T KOG0283|consen 473 -------GYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPD----------------EVLVTSNDSRIRIY 529 (712)
T ss_pred -------cEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCC----------------eEEEecCCCceEEE
Confidence 999999998776654442 12 116777777652221 12223459999999
Q ss_pred eCC
Q 000743 581 QIQ 583 (1313)
Q Consensus 581 dl~ 583 (1313)
|++
T Consensus 530 d~~ 532 (712)
T KOG0283|consen 530 DGR 532 (712)
T ss_pred ecc
Confidence 983
No 53
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.77 E-value=1.5e-17 Score=198.37 Aligned_cols=218 Identities=19% Similarity=0.252 Sum_probs=177.7
Q ss_pred ceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEecc
Q 000743 319 RDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRM 398 (1313)
Q Consensus 319 ~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~ 398 (1313)
..+...|.+.+.++...+++. +.++|+.|.+|++|+|.+... .++..-.+-+-+..++| .-.+.|.|+.++
T Consensus 447 ~Eti~AHdgaIWsi~~~pD~~----g~vT~saDktVkfWdf~l~~~--~~gt~~k~lsl~~~rtL-el~ddvL~v~~S-- 517 (888)
T KOG0306|consen 447 VETIRAHDGAIWSISLSPDNK----GFVTGSADKTVKFWDFKLVVS--VPGTQKKVLSLKHTRTL-ELEDDVLCVSVS-- 517 (888)
T ss_pred hhhhhccccceeeeeecCCCC----ceEEecCCcEEEEEeEEEEec--cCcccceeeeeccceEE-eccccEEEEEEc--
Confidence 455668999999977777777 799999999999966644322 11000000000111222 235679999998
Q ss_pred ccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcE
Q 000743 399 VGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRV 478 (1313)
Q Consensus 399 ~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~ 478 (1313)
||| .+|+.+=-|.||+||-+++.+...++.||.-||.|+.++|+ +..++|||.|+.|++|-++-|.|
T Consensus 518 ---pdg----k~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~D------SklivTgSADKnVKiWGLdFGDC 584 (888)
T KOG0306|consen 518 ---PDG----KLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPD------SKLIVTGSADKNVKIWGLDFGDC 584 (888)
T ss_pred ---CCC----cEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCC------cCeEEeccCCCceEEeccccchh
Confidence 577 99999999999999999999999999999999999999999 79999999999999999999999
Q ss_pred EEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEeeecccccceeecccc
Q 000743 479 ERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVL 558 (1313)
Q Consensus 479 l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS~l 558 (1313)
-..+-+|.+.|.++.|-|....+.+++.| +.|+-||-+.-+.++++.||...| ||.+..+ +|+
T Consensus 585 HKS~fAHdDSvm~V~F~P~~~~FFt~gKD--------~kvKqWDg~kFe~iq~L~~H~~ev----~cLav~~---~G~-- 647 (888)
T KOG0306|consen 585 HKSFFAHDDSVMSVQFLPKTHLFFTCGKD--------GKVKQWDGEKFEEIQKLDGHHSEV----WCLAVSP---NGS-- 647 (888)
T ss_pred hhhhhcccCceeEEEEcccceeEEEecCc--------ceEEeechhhhhhheeeccchhee----eeeEEcC---CCC--
Confidence 99999999999999999999999998888 999999999999999999999999 8887665 333
Q ss_pred cCCcccccCcccccCCCcEEEEeCC
Q 000743 559 NGNTSVSSLLLPIHEDGTFRQSQIQ 583 (1313)
Q Consensus 559 ~g~~l~S~~lvs~s~DgtIr~Wdl~ 583 (1313)
+ +++.+.|.+||+|.-.
T Consensus 648 ---~-----vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 648 ---F-----VVSSSHDKSIRLWERT 664 (888)
T ss_pred ---e-----EEeccCCceeEeeecc
Confidence 3 3555679999999853
No 54
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.77 E-value=4.2e-17 Score=179.02 Aligned_cols=262 Identities=16% Similarity=0.205 Sum_probs=195.2
Q ss_pred CCCceeEEEEEeeeeeEEEEeeeeccCCCccccceEEEEEecccCCCCCceeEEeecCCee--eeeeecc--ee-eeCCC
Q 000743 214 SGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSF--VDWVNNS--TF-LDENE 288 (1313)
Q Consensus 214 ~~~~~~i~~iq~~~~lv~i~svc~d~e~~l~W~p~vtVWsl~~~~~~~~~q~~~~g~~~~~--~dWiss~--l~-~~~~d 288 (1313)
++.+..|+-++|...+-++.+..||. .|-+|.+... ..+..++-++.+.+ ++|..+. ++ .....
T Consensus 44 ~gh~geI~~~~F~P~gs~~aSgG~Dr--------~I~LWnv~gd---ceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk 112 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGSCFASGGSDR--------AIVLWNVYGD---CENFWVLKGHSGAVMELHGMRDGSHILSCGTDK 112 (338)
T ss_pred CCCcceEEEEEECCCCCeEeecCCcc--------eEEEEecccc---ccceeeeccccceeEeeeeccCCCEEEEecCCc
Confidence 34455577777777777777666665 6778865432 22223344555433 3454333 33 33334
Q ss_pred CeeeeeeccccccccccccccccCCCCCCCceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCC
Q 000743 289 GSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSP 368 (1313)
Q Consensus 289 Gi~Iwk~~~ss~~~~i~~l~~~~~~~~~~~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~ 368 (1313)
.++.|+++.. ..+..+++|..-|+++. -..+.|..+.+|+.||++++ ||.
T Consensus 113 ~v~~wD~~tG------------------~~~rk~k~h~~~vNs~~---p~rrg~~lv~SgsdD~t~kl--~D~------- 162 (338)
T KOG0265|consen 113 TVRGWDAETG------------------KRIRKHKGHTSFVNSLD---PSRRGPQLVCSGSDDGTLKL--WDI------- 162 (338)
T ss_pred eEEEEecccc------------------eeeehhccccceeeecC---ccccCCeEEEecCCCceEEE--Eee-------
Confidence 4566776543 34678889999999843 34445567889999999999 653
Q ss_pred CCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECC
Q 000743 369 GASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSP 448 (1313)
Q Consensus 369 ~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsP 448 (1313)
++..+++++.. +..++++.|.. + ...+.||+-|+.|++||++.+..++++.||.++|+.+..+|
T Consensus 163 ------R~k~~~~t~~~-kyqltAv~f~d-----~----s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~ 226 (338)
T KOG0265|consen 163 ------RKKEAIKTFEN-KYQLTAVGFKD-----T----SDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSR 226 (338)
T ss_pred ------cccchhhcccc-ceeEEEEEecc-----c----ccceeeccccCceeeeccccCcceEEeecccCceeeEEecc
Confidence 33345555432 45689999973 2 37899999999999999999999999999999999999999
Q ss_pred CCCCCCCCCEEEEEeCCCeEEEEECCCC----cEEEEecCCCCC----cEEEEEcCCCCEEEEEecCCCCCCCCCCEEEE
Q 000743 449 PQTEHPWSDCFLSVGEDFSVALASLETL----RVERMFPGHPNY----PAKVVWDCPRGYIACLCRDHSRTSDAVDVLFI 520 (1313)
Q Consensus 449 d~~~~~~g~~LaSgS~DgtV~LWDL~t~----~~l~~l~gH~~~----V~sVafsPdg~~Latgs~DlsGssD~DgtIrV 520 (1313)
+ |.++.|-+.|.++++||++.. +|+..+.+|... ...++|+|+++++..|+.| ..+|+
T Consensus 227 ~------gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~d--------r~vyv 292 (338)
T KOG0265|consen 227 Y------GSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSAD--------RFVYV 292 (338)
T ss_pred C------CCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCcccccccc--------ceEEE
Confidence 9 789999999999999999853 678888887542 3589999999999986665 99999
Q ss_pred EECCCCcEEEEEeCCCCceeEEeeec
Q 000743 521 WDVKTGARERVLRGTASHSMFDHFCK 546 (1313)
Q Consensus 521 WDlrTG~lv~~L~GH~a~Vi~~~~c~ 546 (1313)
||..+...+..+.||.+.|..++|.+
T Consensus 293 wd~~~r~~lyklpGh~gsvn~~~Fhp 318 (338)
T KOG0265|consen 293 WDTTSRRILYKLPGHYGSVNEVDFHP 318 (338)
T ss_pred eecccccEEEEcCCcceeEEEeeecC
Confidence 99988899999999999998887754
No 55
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.77 E-value=2e-17 Score=205.27 Aligned_cols=239 Identities=16% Similarity=0.163 Sum_probs=186.6
Q ss_pred CCCceecccCCceEEEEeeeecccccCC--EEEEEEcCCcEEEEEeeccccC---CCCCCccccCCceEEEEEecCCccE
Q 000743 316 GDGRDDFVHKEKIVSSSMVISESFYAPY--AIVYGFFSGEIEVIQFDLFERH---NSPGASLKVNSHVSRQYFLGHTGAV 390 (1313)
Q Consensus 316 ~~~~~~~~~H~~~Vts~l~is~~~fsP~--~LvsGs~DGsI~I~~wdll~~~---~~~~~~wdv~tg~~~~~L~GH~~~V 390 (1313)
.....++..|.+.|+| +.|+|+ .+++|+.|+.|.||........ ..++...+++..+++..|.||.+.|
T Consensus 59 ~k~l~~m~~h~~sv~C------VR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV 132 (942)
T KOG0973|consen 59 PKHLCTMDDHDGSVNC------VRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDV 132 (942)
T ss_pred chhheeeccccCceeE------EEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCcc
Confidence 4567889999999999 566666 4999999999999444321111 1223344677788999999999999
Q ss_pred EEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEE
Q 000743 391 LCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVAL 470 (1313)
Q Consensus 391 ~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~L 470 (1313)
..++|+| |+ .+|+|+|.|++|.+||..+.+++.++.+|.+.|..+.|.|- |++|+|-++|++|++
T Consensus 133 ~Dv~Wsp-----~~----~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~------Gky~ASqsdDrtikv 197 (942)
T KOG0973|consen 133 LDVNWSP-----DD----SLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPI------GKYFASQSDDRTLKV 197 (942)
T ss_pred ceeccCC-----Cc----cEEEEecccceEEEEccccceeeeeeecccccccceEECCc------cCeeeeecCCceEEE
Confidence 9999995 45 89999999999999999999999999999999999999999 899999999999999
Q ss_pred EECCCCcEEEEecCCCC------CcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEee
Q 000743 471 ASLETLRVERMFPGHPN------YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHF 544 (1313)
Q Consensus 471 WDL~t~~~l~~l~gH~~------~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~ 544 (1313)
|++.+....+.+.++-. ....+.|+|||.||++...- ...-.++.|-+-.+.+....|-||.+.+..+.|
T Consensus 198 wrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~----n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrF 273 (942)
T KOG0973|consen 198 WRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAV----NGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRF 273 (942)
T ss_pred EEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhc----cCCcceeEEEecCCceeeeeeecCCCceEEEEe
Confidence 99888888887776533 46899999999999986542 122268999998888889999999999988888
Q ss_pred ecccccceeecccccCCccccc----CcccccCCCcEEEEeCC
Q 000743 545 CKGISMNSISGSVLNGNTSVSS----LLLPIHEDGTFRQSQIQ 583 (1313)
Q Consensus 545 c~~~s~~ivSGS~l~g~~l~S~----~lvs~s~DgtIr~Wdl~ 583 (1313)
.+. ++..-..+|.....+ -+-..++|+++-+|+..
T Consensus 274 nP~----lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~ 312 (942)
T KOG0973|consen 274 NPK----LFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTA 312 (942)
T ss_pred ChH----HhccccccCCccCCCcceEEEEEecCCccEEEEecC
Confidence 653 222221122111111 22344689999999975
No 56
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.77 E-value=4.3e-19 Score=194.59 Aligned_cols=187 Identities=22% Similarity=0.333 Sum_probs=151.7
Q ss_pred cCCceEEEEeeeecccccCC--EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccC
Q 000743 324 HKEKIVSSSMVISESFYAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGT 401 (1313)
Q Consensus 324 ~H~~~Vts~l~is~~~fsP~--~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~ 401 (1313)
+....+.| ..|+|+ .+++|+.||.|.+ |+...+.-.. |. .-+....|.-|.++|.|+.|+.
T Consensus 211 g~KSh~Ec------A~FSPDgqyLvsgSvDGFiEV--Wny~~GKlrK----DL-kYQAqd~fMMmd~aVlci~FSR---- 273 (508)
T KOG0275|consen 211 GQKSHVEC------ARFSPDGQYLVSGSVDGFIEV--WNYTTGKLRK----DL-KYQAQDNFMMMDDAVLCISFSR---- 273 (508)
T ss_pred ccccchhh------eeeCCCCceEeeccccceeee--ehhccchhhh----hh-hhhhhcceeecccceEEEeecc----
Confidence 33445566 566666 4999999999999 6543321111 11 1122334567899999999983
Q ss_pred CCCCccCcEEEEEeCCCcEEEEECCCCceEEEEe-ccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEE
Q 000743 402 AKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMH-HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVER 480 (1313)
Q Consensus 402 pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~-gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~ 480 (1313)
| .+.++||+.||.|++|.+.+|.|+++|. .|+..|+++.|+.| +..++|++.|.++++..++.|+++.
T Consensus 274 -D----sEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD------~SqiLS~sfD~tvRiHGlKSGK~LK 342 (508)
T KOG0275|consen 274 -D----SEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRD------NSQILSASFDQTVRIHGLKSGKCLK 342 (508)
T ss_pred -c----HHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccC------cchhhcccccceEEEeccccchhHH
Confidence 3 3899999999999999999999999998 89999999999999 6889999999999999999999999
Q ss_pred EecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEe--CCCCceeEEeeec
Q 000743 481 MFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR--GTASHSMFDHFCK 546 (1313)
Q Consensus 481 ~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~--GH~a~Vi~~~~c~ 546 (1313)
.|+||.++|+...|.++|.++++++.| |+|+||+.+|++++.++. |....|..+...+
T Consensus 343 EfrGHsSyvn~a~ft~dG~~iisaSsD--------gtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~P 402 (508)
T KOG0275|consen 343 EFRGHSSYVNEATFTDDGHHIISASSD--------GTVKVWHGKTTECLSTFKPLGTDYPVNSVILLP 402 (508)
T ss_pred HhcCccccccceEEcCCCCeEEEecCC--------ccEEEecCcchhhhhhccCCCCcccceeEEEcC
Confidence 999999999999999999999997766 999999999999998886 4555555554433
No 57
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=2.2e-17 Score=177.65 Aligned_cols=208 Identities=19% Similarity=0.162 Sum_probs=162.4
Q ss_pred CceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEec
Q 000743 318 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 397 (1313)
Q Consensus 318 ~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP 397 (1313)
++..|+.|..+|.++-+..... ..+++++.||+|++ |+. ...+.++++.||...|....|+|
T Consensus 96 Pi~~~kEH~~EV~Svdwn~~~r---~~~ltsSWD~TiKL--W~~-------------~r~~Sv~Tf~gh~~~Iy~a~~sp 157 (311)
T KOG0277|consen 96 PIHKFKEHKREVYSVDWNTVRR---RIFLTSSWDGTIKL--WDP-------------NRPNSVQTFNGHNSCIYQAAFSP 157 (311)
T ss_pred chhHHHhhhhheEEeccccccc---eeEEeeccCCceEe--ecC-------------CCCcceEeecCCccEEEEEecCC
Confidence 6889999999999943332222 24888899999999 754 23367899999999999999998
Q ss_pred cccCCCCCccCcEEEEEeCCCcEEEEECCC-CceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCC
Q 000743 398 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGS-GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL 476 (1313)
Q Consensus 398 ~~s~pDGr~~~~~LaSGS~DgtIrVWDl~t-g~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~ 476 (1313)
. . .++++|+|.|++.++||++. |+.+. +..|...+.++.|+.-+ .+.+++++.|+.|+.||++..
T Consensus 158 ~----~----~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~-----~~vl~Tg~vd~~vr~wDir~~ 223 (311)
T KOG0277|consen 158 H----I----PNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYN-----HNVLATGGVDNLVRGWDIRNL 223 (311)
T ss_pred C----C----CCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccC-----CcEEEecCCCceEEEEehhhc
Confidence 2 2 38999999999999999985 45444 88899999999999764 478999999999999999976
Q ss_pred c-EEEEecCCCCCcEEEEEcCCCC-EEEEEecCCCCCCCCCCEEEEEECCCC-cEEEEEeCCCCceeEEeeeccccccee
Q 000743 477 R-VERMFPGHPNYPAKVVWDCPRG-YIACLCRDHSRTSDAVDVLFIWDVKTG-ARERVLRGTASHSMFDHFCKGISMNSI 553 (1313)
Q Consensus 477 ~-~l~~l~gH~~~V~sVafsPdg~-~Latgs~DlsGssD~DgtIrVWDlrTG-~lv~~L~GH~a~Vi~~~~c~~~s~~iv 553 (1313)
+ ++..+.+|.-.|+.++|+|... .|++++.| =|+||||.+.+ .++.+..-|+..|..+.|.+-
T Consensus 224 r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYD--------mT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~------ 289 (311)
T KOG0277|consen 224 RTPLFELNGHGLAVRKVKFSPHHASLLASASYD--------MTVRIWDPERQDSAIETVDHHTEFVCGLDWSLF------ 289 (311)
T ss_pred cccceeecCCceEEEEEecCcchhhHhhhcccc--------ceEEecccccchhhhhhhhccceEEeccccccc------
Confidence 4 6788999999999999999765 45554433 89999999865 456777888877766555431
Q ss_pred ecccccCCcccccCcccccCCCcEEEEe
Q 000743 554 SGSVLNGNTSVSSLLLPIHEDGTFRQSQ 581 (1313)
Q Consensus 554 SGS~l~g~~l~S~~lvs~s~DgtIr~Wd 581 (1313)
.+ ...++... |+++++|+
T Consensus 290 ~~-----~~vAs~gW-----De~l~Vw~ 307 (311)
T KOG0277|consen 290 DP-----GQVASTGW-----DELLYVWN 307 (311)
T ss_pred cC-----ceeeeccc-----ccceeeec
Confidence 11 13334444 99999998
No 58
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=1.3e-17 Score=188.37 Aligned_cols=215 Identities=14% Similarity=0.162 Sum_probs=155.2
Q ss_pred CCceecccCCceEEEEeeeecccccCC--EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEE
Q 000743 317 DGRDDFVHKEKIVSSSMVISESFYAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLA 394 (1313)
Q Consensus 317 ~~~~~~~~H~~~Vts~l~is~~~fsP~--~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLa 394 (1313)
...+.+..|..+|.- ..|+++ .+++++.|.+..| |.... |.. -+..+++.||..+|..+.
T Consensus 215 qt~qil~~htdEVWf------l~FS~nGkyLAsaSkD~Taii--w~v~~---------d~~-~kl~~tlvgh~~~V~yi~ 276 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWF------LQFSHNGKYLASASKDSTAII--WIVVY---------DVH-FKLKKTLVGHSQPVSYIM 276 (519)
T ss_pred hhhhhHhhCCCcEEE------EEEcCCCeeEeeccCCceEEE--EEEec---------Ccc-eeeeeeeecccCceEEEE
Confidence 346778899999999 556555 4999999999999 65321 222 367899999999999999
Q ss_pred EeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEe-ccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEEC
Q 000743 395 AHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMH-HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASL 473 (1313)
Q Consensus 395 fsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~-gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL 473 (1313)
|+| | +++|++++.|..+++||..+|.+.+.+. +|...+.+++|.|| |..+++|+.|+++..||+
T Consensus 277 wSP-----D----dryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pD------g~~~V~Gs~dr~i~~wdl 341 (519)
T KOG0293|consen 277 WSP-----D----DRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPD------GFRFVTGSPDRTIIMWDL 341 (519)
T ss_pred ECC-----C----CCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccC------CceeEecCCCCcEEEecC
Confidence 996 3 4899999999999999999999988886 24578999999999 788999999999999998
Q ss_pred CCCcEEEEecC------------------------------------------CCCCcEEEEEcCCCCEEEEEecC----
Q 000743 474 ETLRVERMFPG------------------------------------------HPNYPAKVVWDCPRGYIACLCRD---- 507 (1313)
Q Consensus 474 ~t~~~l~~l~g------------------------------------------H~~~V~sVafsPdg~~Latgs~D---- 507 (1313)
+.. .+...++ -..++++++.+.+++++++.=.+
T Consensus 342 Dgn-~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~ 420 (519)
T KOG0293|consen 342 DGN-ILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIH 420 (519)
T ss_pred Ccc-hhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeE
Confidence 632 1110000 01123333333332222221111
Q ss_pred -----------------------------------CCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEeeecccccce
Q 000743 508 -----------------------------------HSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNS 552 (1313)
Q Consensus 508 -----------------------------------lsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~~~s~~i 552 (1313)
.+|+.| +.||||+.++|.++.++.||...|.++.|.+..-
T Consensus 421 LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED--~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p--- 495 (519)
T KOG0293|consen 421 LWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSED--SKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADP--- 495 (519)
T ss_pred EeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCC--ceEEEEEccCCceeEeecCCcceeeEEecCCCCH---
Confidence 223333 9999999999999999999999997776654322
Q ss_pred eecccccCCcccccCcccccCCCcEEEEeCC
Q 000743 553 ISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 583 (1313)
Q Consensus 553 vSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~ 583 (1313)
.-+.+.+.|||||+|...
T Consensus 496 -------------~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 496 -------------EMFASASDDGTIRIWGPS 513 (519)
T ss_pred -------------HHhhccCCCCeEEEecCC
Confidence 223344559999999875
No 59
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.76 E-value=5.2e-16 Score=200.52 Aligned_cols=170 Identities=22% Similarity=0.244 Sum_probs=139.7
Q ss_pred CceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEec
Q 000743 318 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 397 (1313)
Q Consensus 318 ~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP 397 (1313)
....+.+|...|+++.+.+.. +..+++|+.||.|++ ||+ .++.+...+..| ..|.++.|++
T Consensus 567 ~~~~~~~H~~~V~~l~~~p~~---~~~L~Sgs~Dg~v~i--Wd~-------------~~~~~~~~~~~~-~~v~~v~~~~ 627 (793)
T PLN00181 567 LVTEMKEHEKRVWSIDYSSAD---PTLLASGSDDGSVKL--WSI-------------NQGVSIGTIKTK-ANICCVQFPS 627 (793)
T ss_pred EEEEecCCCCCEEEEEEcCCC---CCEEEEEcCCCEEEE--EEC-------------CCCcEEEEEecC-CCeEEEEEeC
Confidence 356678899999994443211 125899999999999 643 445667777765 5799999974
Q ss_pred cccCCCCCccCcEEEEEeCCCcEEEEECCCCc-eEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCC-
Q 000743 398 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN-LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET- 475 (1313)
Q Consensus 398 ~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~-~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t- 475 (1313)
++| .+|++|+.|++|++||+++++ ++..+.+|...|.++.|.+ +..+++++.|++|++||++.
T Consensus 628 ----~~g----~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~-------~~~lvs~s~D~~ikiWd~~~~ 692 (793)
T PLN00181 628 ----ESG----RSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVD-------SSTLVSSSTDNTLKLWDLSMS 692 (793)
T ss_pred ----CCC----CEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeC-------CCEEEEEECCCEEEEEeCCCC
Confidence 456 899999999999999998876 6778889999999999974 47899999999999999974
Q ss_pred -----CcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEE
Q 000743 476 -----LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARE 529 (1313)
Q Consensus 476 -----~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv 529 (1313)
.+++..+.+|...+.+++|+|++.+|++|+.| ++|++|+...+..+
T Consensus 693 ~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D--------~~v~iw~~~~~~~~ 743 (793)
T PLN00181 693 ISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSET--------NEVFVYHKAFPMPV 743 (793)
T ss_pred ccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCC--------CEEEEEECCCCCce
Confidence 36788999999999999999999999998877 99999998766544
No 60
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=3.6e-16 Score=169.87 Aligned_cols=275 Identities=15% Similarity=0.153 Sum_probs=199.3
Q ss_pred eEEEeeecccccccccccccccceeEEEEecCCCeEEEEEeccccccccccccccCcccCCCCCceeEEEEEeeeeeEEE
Q 000743 153 AMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRM 232 (1313)
Q Consensus 153 g~~l~~~~~~~~~~~~~~~~~~~~~~~vw~~~~~~~vy~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~iq~~~~lv~i 232 (1313)
|..|+++++ ++.++||+..++...-+..-+.+ +.+..|.-+.+.++.-.+
T Consensus 27 g~ilAscg~-------------Dk~vriw~~~~~~s~~ck~vld~-----------------~hkrsVRsvAwsp~g~~L 76 (312)
T KOG0645|consen 27 GVILASCGT-------------DKAVRIWSTSSGDSWTCKTVLDD-----------------GHKRSVRSVAWSPHGRYL 76 (312)
T ss_pred ceEEEeecC-------------CceEEEEecCCCCcEEEEEeccc-----------------cchheeeeeeecCCCcEE
Confidence 778899999 88899999886544322222211 224457777777766666
Q ss_pred EeeeeccCCCccccceEEEEEecccCCCCCceeEEeecCCeeeeeeecceeeeCCCCeeeeeeccccccccccccccccC
Q 000743 233 ETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDS 312 (1313)
Q Consensus 233 ~svc~d~e~~l~W~p~vtVWsl~~~~~~~~~q~~~~g~~~~~~dWiss~l~~~~~dGi~Iwk~~~ss~~~~i~~l~~~~~ 312 (1313)
.+..||. ++.||.=. ++ +|
T Consensus 77 a~aSFD~--------t~~Iw~k~---------------~~---ef----------------------------------- 95 (312)
T KOG0645|consen 77 ASASFDA--------TVVIWKKE---------------DG---EF----------------------------------- 95 (312)
T ss_pred EEeeccc--------eEEEeecC---------------CC---ce-----------------------------------
Confidence 6677776 67777100 00 00
Q ss_pred CCCCCCceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEE
Q 000743 313 RQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLC 392 (1313)
Q Consensus 313 ~~~~~~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~s 392 (1313)
.+..++.||..+|.|..+..+.. .|++++.|.+|.| |..... ..-.+...|++|+..|.-
T Consensus 96 ----ecv~~lEGHEnEVK~Vaws~sG~----~LATCSRDKSVWi--We~ded----------dEfec~aVL~~HtqDVK~ 155 (312)
T KOG0645|consen 96 ----ECVATLEGHENEVKCVAWSASGN----YLATCSRDKSVWI--WEIDED----------DEFECIAVLQEHTQDVKH 155 (312)
T ss_pred ----eEEeeeeccccceeEEEEcCCCC----EEEEeeCCCeEEE--EEecCC----------CcEEEEeeeccccccccE
Confidence 24567889999999954444444 4999999999999 653322 334788999999999999
Q ss_pred EEEeccccCCCCCccCcEEEEEeCCCcEEEEECC---CCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEE
Q 000743 393 LAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLG---SGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVA 469 (1313)
Q Consensus 393 LafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~---tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~ 469 (1313)
+.||| ...+|+|+|.|.|||+|+-. ..++.+++.+|...|.+++|+|. |..++|++.|++|+
T Consensus 156 V~WHP---------t~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~------G~rl~s~sdD~tv~ 220 (312)
T KOG0645|consen 156 VIWHP---------TEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNI------GSRLVSCSDDGTVS 220 (312)
T ss_pred EEEcC---------CcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCC------CceEEEecCCcceE
Confidence 99998 24799999999999999876 34699999999999999999998 78999999999999
Q ss_pred EEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCC------cEE-EEEeCCCCceeEE
Q 000743 470 LASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG------ARE-RVLRGTASHSMFD 542 (1313)
Q Consensus 470 LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG------~lv-~~L~GH~a~Vi~~ 542 (1313)
||-..+.-. .-|...++.+.|. ...|++++.| +.|+++.-..+ +++ ..-..|...|.++
T Consensus 221 Iw~~~~~~~----~~~sr~~Y~v~W~--~~~IaS~ggD--------~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV 286 (312)
T KOG0645|consen 221 IWRLYTDLS----GMHSRALYDVPWD--NGVIASGGGD--------DAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSV 286 (312)
T ss_pred eeeeccCcc----hhcccceEeeeec--ccceEeccCC--------CEEEEEEecCCCCCchHHHHHhhhcccccccceE
Confidence 998662211 2366788999998 4578887766 99999976542 111 2335688777777
Q ss_pred eeecccccceeecccccCCcccccCcccccCCCcEEEEeCC
Q 000743 543 HFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 583 (1313)
Q Consensus 543 ~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~ 583 (1313)
+|.+.. ++.+++.+.||++++|.+.
T Consensus 287 ~w~p~~----------------~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 287 QWNPKV----------------SNRLASGGDDGIVNFWELE 311 (312)
T ss_pred EEcCCC----------------CCceeecCCCceEEEEEec
Confidence 775422 3344555569999999874
No 61
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=1.3e-17 Score=178.61 Aligned_cols=212 Identities=18% Similarity=0.248 Sum_probs=166.7
Q ss_pred ccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEE-eccccC
Q 000743 323 VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAA-HRMVGT 401 (1313)
Q Consensus 323 ~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLaf-sP~~s~ 401 (1313)
..|.+.|.. ....|...+|++++.|++|+| |..... ...+.+.+|.||.++|+.++| ||
T Consensus 8 t~H~D~IHd----a~lDyygkrlATcsSD~tVkI--f~v~~n----------~~s~ll~~L~Gh~GPVwqv~wahP---- 67 (299)
T KOG1332|consen 8 TQHEDMIHD----AQLDYYGKRLATCSSDGTVKI--FEVRNN----------GQSKLLAELTGHSGPVWKVAWAHP---- 67 (299)
T ss_pred hhhhhhhhH----hhhhhhcceeeeecCCccEEE--EEEcCC----------CCceeeeEecCCCCCeeEEeeccc----
Confidence 345555544 234566668999999999999 643211 112678899999999999999 54
Q ss_pred CCCCccCcEEEEEeCCCcEEEEECCCCc--eEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCC---
Q 000743 402 AKGWSFNEVLVSGSMDCSIRIWDLGSGN--LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL--- 476 (1313)
Q Consensus 402 pDGr~~~~~LaSGS~DgtIrVWDl~tg~--~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~--- 476 (1313)
. ...+|+|+|.|+.|.||.-..|+ ..+.+..|...|++|+|.|.+. |-.|++++.||.|.+.+.+..
T Consensus 68 k----~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~waphey----gl~LacasSDG~vsvl~~~~~g~w 139 (299)
T KOG1332|consen 68 K----FGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEY----GLLLACASSDGKVSVLTYDSSGGW 139 (299)
T ss_pred c----cCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeeccccccc----ceEEEEeeCCCcEEEEEEcCCCCc
Confidence 2 34899999999999999988775 4566778999999999999854 789999999999999998754
Q ss_pred cEEEEecCCCCCcEEEEEcCC---C-----------CEEEEEecCCCCCCCCCCEEEEEECCCC--cEEEEEeCCCCcee
Q 000743 477 RVERMFPGHPNYPAKVVWDCP---R-----------GYIACLCRDHSRTSDAVDVLFIWDVKTG--ARERVLRGTASHSM 540 (1313)
Q Consensus 477 ~~l~~l~gH~~~V~sVafsPd---g-----------~~Latgs~DlsGssD~DgtIrVWDlrTG--~lv~~L~GH~a~Vi 540 (1313)
........|+-.|++++|.|. | ..|++|+.| +.|+||+..++ .+.++|.+|++.|.
T Consensus 140 ~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcD--------n~VkiW~~~~~~w~~e~~l~~H~dwVR 211 (299)
T KOG1332|consen 140 TTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCD--------NLVKIWKFDSDSWKLERTLEGHKDWVR 211 (299)
T ss_pred cchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCc--------cceeeeecCCcchhhhhhhhhcchhhh
Confidence 233456789999999999997 4 458887666 99999999886 45678999999999
Q ss_pred EEeeecccccceeecccccCCcccccCcccccCCCcEEEEeCC
Q 000743 541 FDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 583 (1313)
Q Consensus 541 ~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~ 583 (1313)
.++||+.+.. ....+.++++||++-+|-.+
T Consensus 212 DVAwaP~~gl-------------~~s~iAS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 212 DVAWAPSVGL-------------PKSTIASCSQDGTVIIWTKD 241 (299)
T ss_pred hhhhccccCC-------------CceeeEEecCCCcEEEEEec
Confidence 9999985432 23345677889999999876
No 62
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.74 E-value=3.3e-17 Score=194.74 Aligned_cols=197 Identities=21% Similarity=0.264 Sum_probs=162.4
Q ss_pred CCceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEe
Q 000743 317 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAH 396 (1313)
Q Consensus 317 ~~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafs 396 (1313)
.+..++.+|...|+|.....+.. +++|+.|.+.++ |. .+++...+.||+..|++++.-
T Consensus 92 ~P~~~LkgH~snVC~ls~~~~~~-----~iSgSWD~Takv--W~---------------~~~l~~~l~gH~asVWAv~~l 149 (745)
T KOG0301|consen 92 EPLYTLKGHKSNVCSLSIGEDGT-----LISGSWDSTAKV--WR---------------IGELVYSLQGHTASVWAVASL 149 (745)
T ss_pred CchhhhhccccceeeeecCCcCc-----eEecccccceEE--ec---------------chhhhcccCCcchheeeeeec
Confidence 46889999999999954333333 899999999999 63 235667799999999999987
Q ss_pred ccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCC
Q 000743 397 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL 476 (1313)
Q Consensus 397 P~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~ 476 (1313)
| .+.++|||.|++||+|.- ++++++|.+|++-|+.+++-|+ ..|+|++.||.|++|++ ++
T Consensus 150 ~----------e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~-------~~flScsNDg~Ir~w~~-~g 209 (745)
T KOG0301|consen 150 P----------ENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDD-------SHFLSCSNDGSIRLWDL-DG 209 (745)
T ss_pred C----------CCcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecC-------CCeEeecCCceEEEEec-cC
Confidence 5 248999999999999974 8899999999999999999998 56999999999999999 79
Q ss_pred cEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEeeecccccceeecc
Q 000743 477 RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGS 556 (1313)
Q Consensus 477 ~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS 556 (1313)
+++..+.||++.|+++...+++..++++++| ++++||+.. +++++++-.+..+.++ -|... .+++.|+
T Consensus 210 e~l~~~~ghtn~vYsis~~~~~~~Ivs~gED--------rtlriW~~~--e~~q~I~lPttsiWsa-~~L~N-gDIvvg~ 277 (745)
T KOG0301|consen 210 EVLLEMHGHTNFVYSISMALSDGLIVSTGED--------RTLRIWKKD--ECVQVITLPTTSIWSA-KVLLN-GDIVVGG 277 (745)
T ss_pred ceeeeeeccceEEEEEEecCCCCeEEEecCC--------ceEEEeecC--ceEEEEecCccceEEE-EEeeC-CCEEEec
Confidence 9999999999999999977778888988887 999999975 8888888777666444 22222 2344443
Q ss_pred cccCCcccccCcccccCCCcEEEEeCC
Q 000743 557 VLNGNTSVSSLLLPIHEDGTFRQSQIQ 583 (1313)
Q Consensus 557 ~l~g~~l~S~~lvs~s~DgtIr~Wdl~ 583 (1313)
+||.||+|...
T Consensus 278 ----------------SDG~VrVfT~~ 288 (745)
T KOG0301|consen 278 ----------------SDGRVRVFTVD 288 (745)
T ss_pred ----------------cCceEEEEEec
Confidence 39999999864
No 63
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.74 E-value=5.7e-18 Score=185.83 Aligned_cols=205 Identities=21% Similarity=0.286 Sum_probs=169.3
Q ss_pred CCCceecccCCceEEEEeeeecccccCC--EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEe-cCCccEEE
Q 000743 316 GDGRDDFVHKEKIVSSSMVISESFYAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFL-GHTGAVLC 392 (1313)
Q Consensus 316 ~~~~~~~~~H~~~Vts~l~is~~~fsP~--~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~-GH~~~V~s 392 (1313)
.+....|.-+.+.|.| ..|+.+ .+++|+.||.|++ | .+.+|.|++.|. .|+..|+|
T Consensus 253 YQAqd~fMMmd~aVlc------i~FSRDsEMlAsGsqDGkIKv--W-------------ri~tG~ClRrFdrAHtkGvt~ 311 (508)
T KOG0275|consen 253 YQAQDNFMMMDDAVLC------ISFSRDSEMLASGSQDGKIKV--W-------------RIETGQCLRRFDRAHTKGVTC 311 (508)
T ss_pred hhhhcceeecccceEE------EeecccHHHhhccCcCCcEEE--E-------------EEecchHHHHhhhhhccCeeE
Confidence 3456677888999999 455544 5999999999999 4 347888999886 99999999
Q ss_pred EEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEE
Q 000743 393 LAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALAS 472 (1313)
Q Consensus 393 LafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWD 472 (1313)
+.|+ .|+ ..++|+|.|.+||+.-+.+|+++..|.||++.|+...|.++ |+.++|+|.|++|++|+
T Consensus 312 l~FS-----rD~----SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~d------G~~iisaSsDgtvkvW~ 376 (508)
T KOG0275|consen 312 LSFS-----RDN----SQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDD------GHHIISASSDGTVKVWH 376 (508)
T ss_pred EEEc-----cCc----chhhcccccceEEEeccccchhHHHhcCccccccceEEcCC------CCeEEEecCCccEEEec
Confidence 9998 455 78999999999999999999999999999999999999999 89999999999999999
Q ss_pred CCCCcEEEEecC-----------------------------------------------CCCCcEEEEEcCCCCEEEEEe
Q 000743 473 LETLRVERMFPG-----------------------------------------------HPNYPAKVVWDCPRGYIACLC 505 (1313)
Q Consensus 473 L~t~~~l~~l~g-----------------------------------------------H~~~V~sVafsPdg~~Latgs 505 (1313)
.++.+|+.+|+. ..+...+++.+|.|.++.+.+
T Consensus 377 ~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcig 456 (508)
T KOG0275|consen 377 GKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIG 456 (508)
T ss_pred CcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEc
Confidence 988766554431 011234567799999999988
Q ss_pred cCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEeeecccccceeecccccCCcccccCcccccCCCcEEEEe
Q 000743 506 RDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 581 (1313)
Q Consensus 506 ~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wd 581 (1313)
+| +.+|.+.+.+|.+.+++.-|...|+.....+ -.+++.+.++||.+|+|.
T Consensus 457 ED--------~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHP-----------------HqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 457 ED--------GVLYCFSVLSGKLERTLPVHEKDVIGLTHHP-----------------HQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cC--------cEEEEEEeecCceeeeeecccccccccccCc-----------------ccchhhhhcccchhhhcC
Confidence 77 9999999999999999999998887654332 123445567899999995
No 64
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.74 E-value=1.2e-17 Score=200.32 Aligned_cols=194 Identities=21% Similarity=0.252 Sum_probs=156.9
Q ss_pred EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEE
Q 000743 344 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 423 (1313)
Q Consensus 344 ~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVW 423 (1313)
.|++++..|.|.+ ||+... -..+.+..|..|+..|+++.||+ ....+|+|||.||+|++|
T Consensus 102 lIAT~s~nG~i~v--Wdlnk~----------~rnk~l~~f~EH~Rs~~~ldfh~--------tep~iliSGSQDg~vK~~ 161 (839)
T KOG0269|consen 102 LIATCSTNGVISV--WDLNKS----------IRNKLLTVFNEHERSANKLDFHS--------TEPNILISGSQDGTVKCW 161 (839)
T ss_pred hheeecCCCcEEE--EecCcc----------ccchhhhHhhhhccceeeeeecc--------CCccEEEecCCCceEEEE
Confidence 5999999999999 665321 12245668899999999999995 245899999999999999
Q ss_pred ECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCC-cEEEEecCCCCCcEEEEEcCCCCEEE
Q 000743 424 DLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL-RVERMFPGHPNYPAKVVWDCPRGYIA 502 (1313)
Q Consensus 424 Dl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~-~~l~~l~gH~~~V~sVafsPdg~~La 502 (1313)
|++..+-..++.+....|+.|.|+|.. ++.|+++.+.|.+.+||+|.. ++...+..|.++|.|+.|||++.||+
T Consensus 162 DlR~~~S~~t~~~nSESiRDV~fsp~~-----~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lA 236 (839)
T KOG0269|consen 162 DLRSKKSKSTFRSNSESIRDVKFSPGY-----GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLA 236 (839)
T ss_pred eeecccccccccccchhhhceeeccCC-----CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceee
Confidence 999999999999999999999999975 689999999999999999864 67889999999999999999999999
Q ss_pred EEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCC-CceeEEeeecccccceeecccccCCcccccCcccccCCCcEEEEe
Q 000743 503 CLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTA-SHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 581 (1313)
Q Consensus 503 tgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~-a~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wd 581 (1313)
||++| +.|+|||+.+++.-....-|+ +.|..+.|=++....+.+-++ --|..|++||
T Consensus 237 TGGRD--------K~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsm--------------v~dtsV~VWD 294 (839)
T KOG0269|consen 237 TGGRD--------KMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSM--------------VVDTSVHVWD 294 (839)
T ss_pred ecCCC--------ccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhc--------------cccceEEEEe
Confidence 99987 999999998765544333333 456666776655433322221 1277899999
Q ss_pred CCc
Q 000743 582 IQN 584 (1313)
Q Consensus 582 l~~ 584 (1313)
+++
T Consensus 295 vrR 297 (839)
T KOG0269|consen 295 VRR 297 (839)
T ss_pred ecc
Confidence 975
No 65
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.73 E-value=4.4e-17 Score=173.63 Aligned_cols=165 Identities=24% Similarity=0.310 Sum_probs=147.5
Q ss_pred eEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCC
Q 000743 378 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSD 457 (1313)
Q Consensus 378 ~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~ 457 (1313)
+..+.+.+|+++|..+.|+ -|| ++.++++.|++||+|+...|.+++++.+|...|..++.+.+ +.
T Consensus 8 kr~~~l~~~qgaV~avryN-----~dG----nY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~D------ns 72 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYN-----VDG----NYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSD------NS 72 (307)
T ss_pred hhceeecccccceEEEEEc-----cCC----CEEEEcCCCceEEeecccccceeeeecCCCceeeecccccc------cc
Confidence 3467889999999999998 577 99999999999999999999999999999999999999998 57
Q ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCC--CcEEEEEeCC
Q 000743 458 CFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT--GARERVLRGT 535 (1313)
Q Consensus 458 ~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrT--G~lv~~L~GH 535 (1313)
.|++++.|+.|.+||+.+|+.++.+.+|.+.|+.+.|+.+...+++|+.| .++++||-|+ -++++.+..-
T Consensus 73 kf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD--------~s~r~wDCRS~s~ePiQildea 144 (307)
T KOG0316|consen 73 KFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFD--------SSVRLWDCRSRSFEPIQILDEA 144 (307)
T ss_pred ccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEecccc--------ceeEEEEcccCCCCccchhhhh
Confidence 89999999999999999999999999999999999999999999998877 9999999987 4688999888
Q ss_pred CCceeEEeeecccccceeecccccCCcccccCcccccCCCcEEEEeCCc
Q 000743 536 ASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 584 (1313)
Q Consensus 536 ~a~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~~ 584 (1313)
.+.|+++.... ..++.||. |||+|.++++.
T Consensus 145 ~D~V~Si~v~~---heIvaGS~----------------DGtvRtydiR~ 174 (307)
T KOG0316|consen 145 KDGVSSIDVAE---HEIVAGSV----------------DGTVRTYDIRK 174 (307)
T ss_pred cCceeEEEecc---cEEEeecc----------------CCcEEEEEeec
Confidence 88887764421 24667765 99999999974
No 66
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.73 E-value=3.8e-16 Score=181.07 Aligned_cols=187 Identities=18% Similarity=0.204 Sum_probs=152.6
Q ss_pred ceecccCCceEEEEeeeecccccCCE--EEEEEcCCcEEEEEeec----cccC----CCC--CCcc--------------
Q 000743 319 RDDFVHKEKIVSSSMVISESFYAPYA--IVYGFFSGEIEVIQFDL----FERH----NSP--GASL-------------- 372 (1313)
Q Consensus 319 ~~~~~~H~~~Vts~l~is~~~fsP~~--LvsGs~DGsI~I~~wdl----l~~~----~~~--~~~w-------------- 372 (1313)
...+.+|...++- ..|+|.+ +++|-..|.||||.|-. +... +.. ...|
T Consensus 52 ~~iYtEH~~~vtV------AkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGr 125 (603)
T KOG0318|consen 52 VDIYTEHAHQVTV------AKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGR 125 (603)
T ss_pred eeeeccccceeEE------EEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCc
Confidence 5677889888888 5666665 66666679999965311 0000 111 1123
Q ss_pred -------ccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEE
Q 000743 373 -------KVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQII 445 (1313)
Q Consensus 373 -------dv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~ 445 (1313)
-+++|..+-.+.||...|++++|-|. ..-.++|||+|++|-+++=...+...++..|..-|+++.
T Consensus 126 erfg~~F~~DSG~SvGei~GhSr~ins~~~Kps--------RPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VR 197 (603)
T KOG0318|consen 126 ERFGHVFLWDSGNSVGEITGHSRRINSVDFKPS--------RPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVR 197 (603)
T ss_pred cceeEEEEecCCCccceeeccceeEeeeeccCC--------CceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEE
Confidence 23456677788999999999999862 235799999999999999887888889999999999999
Q ss_pred ECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEec---CCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEE
Q 000743 446 LSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFP---GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 522 (1313)
Q Consensus 446 fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~---gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWD 522 (1313)
|+|| |..|+|++.|++|.+||-.+++.+..+. +|.+.|.+++|+||+..++|.+.| .+++|||
T Consensus 198 ysPD------G~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaD--------kt~KIWd 263 (603)
T KOG0318|consen 198 YSPD------GSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSAD--------KTIKIWD 263 (603)
T ss_pred ECCC------CCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCC--------ceEEEEE
Confidence 9999 7999999999999999999999999998 999999999999999999998776 9999999
Q ss_pred CCCCcEEEEEe
Q 000743 523 VKTGARERVLR 533 (1313)
Q Consensus 523 lrTG~lv~~L~ 533 (1313)
+.++.+++++.
T Consensus 264 Vs~~slv~t~~ 274 (603)
T KOG0318|consen 264 VSTNSLVSTWP 274 (603)
T ss_pred eeccceEEEee
Confidence 99988888875
No 67
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.73 E-value=9.5e-17 Score=184.33 Aligned_cols=219 Identities=19% Similarity=0.183 Sum_probs=168.4
Q ss_pred CceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEec
Q 000743 318 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 397 (1313)
Q Consensus 318 ~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP 397 (1313)
+...+.+|.++-+.+.+.. +.+-.+++|+.|+.|.+ ||+..... +.+.-.+...+.+|.+.|..++|+|
T Consensus 169 Pdl~L~gH~~eg~glsWn~---~~~g~Lls~~~d~~i~l--wdi~~~~~------~~~~~~p~~~~~~h~~~VeDV~~h~ 237 (422)
T KOG0264|consen 169 PDLRLKGHEKEGYGLSWNR---QQEGTLLSGSDDHTICL--WDINAESK------EDKVVDPKTIFSGHEDVVEDVAWHP 237 (422)
T ss_pred CceEEEeeccccccccccc---ccceeEeeccCCCcEEE--Eecccccc------CCccccceEEeecCCcceehhhccc
Confidence 4567889998766622222 22226999999999999 76543321 1122356788999999999999997
Q ss_pred cccCCCCCccCcEEEEEeCCCcEEEEECC--CCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCC
Q 000743 398 MVGTAKGWSFNEVLVSGSMDCSIRIWDLG--SGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET 475 (1313)
Q Consensus 398 ~~s~pDGr~~~~~LaSGS~DgtIrVWDl~--tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t 475 (1313)
. +..+++|++.|+.+.|||++ +.++.+...+|.++|+|++|+|-+ +..|||||.|++|+|||+|+
T Consensus 238 ~--------h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~-----~~ilAT~S~D~tV~LwDlRn 304 (422)
T KOG0264|consen 238 L--------HEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFN-----EFILATGSADKTVALWDLRN 304 (422)
T ss_pred c--------chhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCC-----CceEEeccCCCcEEEeechh
Confidence 2 35799999999999999999 667788889999999999999985 67999999999999999997
Q ss_pred C-cEEEEecCCCCCcEEEEEcCCCCE-EEEEecCCCCCCCCCCEEEEEECCC-C-------------cEEEEEeCCCCce
Q 000743 476 L-RVERMFPGHPNYPAKVVWDCPRGY-IACLCRDHSRTSDAVDVLFIWDVKT-G-------------ARERVLRGTASHS 539 (1313)
Q Consensus 476 ~-~~l~~l~gH~~~V~sVafsPdg~~-Latgs~DlsGssD~DgtIrVWDlrT-G-------------~lv~~L~GH~a~V 539 (1313)
. ++++++.+|...|.+|.|+|+... |++++.| +.+.|||+.. | +++..=.||++.|
T Consensus 305 L~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D--------~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV 376 (422)
T KOG0264|consen 305 LNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTD--------RRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKV 376 (422)
T ss_pred cccCceeccCCCcceEEEEeCCCCCceeEecccC--------CcEEEEeccccccccChhhhccCCcceeEEecCccccc
Confidence 5 478999999999999999998764 5554443 9999999854 1 2334556999998
Q ss_pred eEEeeecccccceeecccccCCcccccCcccccCCCcEEEEeCCc
Q 000743 540 MFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 584 (1313)
Q Consensus 540 i~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~~ 584 (1313)
....||+.. + =.+.+++.|+.+.+|+...
T Consensus 377 ~DfsWnp~e-P---------------W~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 377 SDFSWNPNE-P---------------WTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ccccCCCCC-C---------------eEEEEecCCceEEEeeccc
Confidence 777676521 1 1234566799999999763
No 68
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.73 E-value=2.7e-17 Score=195.43 Aligned_cols=176 Identities=22% Similarity=0.351 Sum_probs=143.3
Q ss_pred EEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEE
Q 000743 345 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 424 (1313)
Q Consensus 345 LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWD 424 (1313)
++.|+.|+.|.+ | ......+..+|+||+..|.|+... .++ .++|||.|.|+++|-
T Consensus 74 l~~g~~D~~i~v--~-------------~~~~~~P~~~LkgH~snVC~ls~~-----~~~-----~~iSgSWD~TakvW~ 128 (745)
T KOG0301|consen 74 LVVGGMDTTIIV--F-------------KLSQAEPLYTLKGHKSNVCSLSIG-----EDG-----TLISGSWDSTAKVWR 128 (745)
T ss_pred eEeecccceEEE--E-------------ecCCCCchhhhhccccceeeeecC-----CcC-----ceEecccccceEEec
Confidence 555555555555 3 335567899999999999999864 233 499999999999997
Q ss_pred CCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEE
Q 000743 425 LGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACL 504 (1313)
Q Consensus 425 l~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latg 504 (1313)
+ +++...+.+|...|+++++-|+ +.++|||.|++|++|.- ++++++|.||++.|+.+++-++..++- +
T Consensus 129 ~--~~l~~~l~gH~asVWAv~~l~e-------~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flS-c 196 (745)
T KOG0301|consen 129 I--GELVYSLQGHTASVWAVASLPE-------NTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLS-C 196 (745)
T ss_pred c--hhhhcccCCcchheeeeeecCC-------CcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEe-e
Confidence 5 6777789999999999999998 48999999999999974 789999999999999999999877665 3
Q ss_pred ecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEeeecccccceeecccccCCcccccCcccccCCCcEEEEeCC
Q 000743 505 CRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 583 (1313)
Q Consensus 505 s~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~ 583 (1313)
+.| |.|+.||+ +|+++.++.||++.+.+... ....+..+++++|+|+|+|+..
T Consensus 197 sND--------g~Ir~w~~-~ge~l~~~~ghtn~vYsis~-----------------~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 197 SND--------GSIRLWDL-DGEVLLEMHGHTNFVYSISM-----------------ALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred cCC--------ceEEEEec-cCceeeeeeccceEEEEEEe-----------------cCCCCeEEEecCCceEEEeecC
Confidence 433 99999999 89999999999999844321 1223456777889999999976
No 69
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.73 E-value=1.5e-16 Score=175.55 Aligned_cols=215 Identities=18% Similarity=0.190 Sum_probs=165.2
Q ss_pred CceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEec
Q 000743 318 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 397 (1313)
Q Consensus 318 ~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP 397 (1313)
+.+.|..|.+++++.. -+.-.+++|+.|.+|+| +|+ +....+..+..|.+.|+++.|.|
T Consensus 35 ~lF~~~aH~~sitavA------Vs~~~~aSGssDetI~I--YDm-------------~k~~qlg~ll~HagsitaL~F~~ 93 (362)
T KOG0294|consen 35 PLFAFSAHAGSITALA------VSGPYVASGSSDETIHI--YDM-------------RKRKQLGILLSHAGSITALKFYP 93 (362)
T ss_pred ccccccccccceeEEE------ecceeEeccCCCCcEEE--Eec-------------cchhhhcceeccccceEEEEecC
Confidence 5778899999999932 22225999999999999 543 34466788889999999999986
Q ss_pred cccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCc
Q 000743 398 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR 477 (1313)
Q Consensus 398 ~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~ 477 (1313)
. ....+|+||+.||.|.+||....+++.++++|.+.|+.+++||. +++.+|++.|+++++||+-.|+
T Consensus 94 ~-------~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS------~KLALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 94 P-------LSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPS------GKLALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred C-------cchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCC------CceEEEEcCCceeeeehhhcCc
Confidence 2 12358999999999999999999999999999999999999999 7999999999999999998886
Q ss_pred EEEEecCCCCCcEEEEEcCCCCEEEEEecC---------------------------------CCCCCCCCCEEEEEECC
Q 000743 478 VERMFPGHPNYPAKVVWDCPRGYIACLCRD---------------------------------HSRTSDAVDVLFIWDVK 524 (1313)
Q Consensus 478 ~l~~l~gH~~~V~sVafsPdg~~Latgs~D---------------------------------lsGssD~DgtIrVWDlr 524 (1313)
.-..++-- ...+.+.|+|.|.+++.+..+ +.|..| +.|++||-.
T Consensus 161 ~a~v~~L~-~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~--~~i~~~D~d 237 (362)
T KOG0294|consen 161 VAFVLNLK-NKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDN--EWISLKDTD 237 (362)
T ss_pred cceeeccC-CcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCC--ceEEEeccC
Confidence 54444321 123346677766655555543 223333 899999999
Q ss_pred CCcEEEEEeCCCCceeEEeeecccccceeecccccCCcccccCcccccCCCcEEEEeCCc
Q 000743 525 TGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 584 (1313)
Q Consensus 525 TG~lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~~ 584 (1313)
++.+...+.+|.+.|-.+.+-. .. -...++++++||.|++|++.-
T Consensus 238 s~~~~~~~~AH~~RVK~i~~~~--------~~-------~~~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 238 SDTPLTEFLAHENRVKDIASYT--------NP-------EHEYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred CCccceeeecchhheeeeEEEe--------cC-------CceEEEEeccCceEEEEEccc
Confidence 8999999999999986653221 10 113566777899999999863
No 70
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=6.9e-18 Score=200.82 Aligned_cols=208 Identities=17% Similarity=0.275 Sum_probs=170.8
Q ss_pred eecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccc
Q 000743 320 DDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMV 399 (1313)
Q Consensus 320 ~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~ 399 (1313)
+.+..|...|.+........ -+++|+.|..+-+ |..... .++..|.||...|.||.|++
T Consensus 22 ~~~~~hsaav~~lk~~~s~r----~~~~Gg~~~k~~L--~~i~kp-------------~~i~S~~~hespIeSl~f~~-- 80 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSR----SLVTGGEDEKVNL--WAIGKP-------------NAITSLTGHESPIESLTFDT-- 80 (825)
T ss_pred hhhhhhhhhhceeeeeccce----eeccCCCceeecc--ccccCC-------------chhheeeccCCcceeeecCc--
Confidence 45667788888755444444 3888888887777 532211 23445899999999999985
Q ss_pred cCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEE
Q 000743 400 GTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVE 479 (1313)
Q Consensus 400 s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l 479 (1313)
...+|+.|+.||+|++||+..++.++++.||...+.+|.|+|- +.++++++.|.-+++||.+...|.
T Consensus 81 -------~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~------~~~~a~gStdtd~~iwD~Rk~Gc~ 147 (825)
T KOG0267|consen 81 -------SERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPY------GEFFASGSTDTDLKIWDIRKKGCS 147 (825)
T ss_pred -------chhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccc------eEEeccccccccceehhhhccCce
Confidence 3478999999999999999999999999999999999999998 789999999999999999999999
Q ss_pred EEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEeeecccccceeeccccc
Q 000743 480 RMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLN 559 (1313)
Q Consensus 480 ~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS~l~ 559 (1313)
+.+.+|...|..+.|+|+|+|++.|+.| .+++|||...|+...+|.+|...+..+.|- +.
T Consensus 148 ~~~~s~~~vv~~l~lsP~Gr~v~~g~ed--------~tvki~d~~agk~~~ef~~~e~~v~sle~h----p~-------- 207 (825)
T KOG0267|consen 148 HTYKSHTRVVDVLRLSPDGRWVASGGED--------NTVKIWDLTAGKLSKEFKSHEGKVQSLEFH----PL-------- 207 (825)
T ss_pred eeecCCcceeEEEeecCCCceeeccCCc--------ceeeeecccccccccccccccccccccccC----ch--------
Confidence 9999999889999999999999987765 999999999999999999999998665432 21
Q ss_pred CCcccccCcccccCCCcEEEEeCCccc
Q 000743 560 GNTSVSSLLLPIHEDGTFRQSQIQNDE 586 (1313)
Q Consensus 560 g~~l~S~~lvs~s~DgtIr~Wdl~~~~ 586 (1313)
..++-+.+.|+++|+|++...+
T Consensus 208 -----e~Lla~Gs~d~tv~f~dletfe 229 (825)
T KOG0267|consen 208 -----EVLLAPGSSDRTVRFWDLETFE 229 (825)
T ss_pred -----hhhhccCCCCceeeeeccceeE
Confidence 1122334459999999998544
No 71
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.72 E-value=6.9e-18 Score=194.28 Aligned_cols=166 Identities=20% Similarity=0.254 Sum_probs=144.0
Q ss_pred eEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCC-CceEEEEeccCCCEEEEEECCCCCCCCCC
Q 000743 378 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS-GNLITVMHHHVAPVRQIILSPPQTEHPWS 456 (1313)
Q Consensus 378 ~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~t-g~~l~t~~gH~~~V~sV~fsPd~~~~~~g 456 (1313)
+.+.++.||+..|+++.|.| ..| .+|+||+.|+.|+||++.. +.++++|.+|..+|..++|+.+ |
T Consensus 205 k~~~~~~gH~kgvsai~~fp----~~~----hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~------g 270 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFP----KKG----HLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNC------G 270 (503)
T ss_pred hheeeccCCccccchhhhcc----cee----eEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhcccc------C
Confidence 56788999999999999997 234 8999999999999999886 8999999999999999999999 7
Q ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEEcCCC-CEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCC
Q 000743 457 DCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPR-GYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGT 535 (1313)
Q Consensus 457 ~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg-~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH 535 (1313)
..|+|+|-|+++++||+++|+++..|.-- ..++|+.|+|++ +.+++|+.| +.|+.||+|+|+.++++..|
T Consensus 271 ~~fLS~sfD~~lKlwDtETG~~~~~f~~~-~~~~cvkf~pd~~n~fl~G~sd--------~ki~~wDiRs~kvvqeYd~h 341 (503)
T KOG0282|consen 271 TSFLSASFDRFLKLWDTETGQVLSRFHLD-KVPTCVKFHPDNQNIFLVGGSD--------KKIRQWDIRSGKVVQEYDRH 341 (503)
T ss_pred CeeeeeecceeeeeeccccceEEEEEecC-CCceeeecCCCCCcEEEEecCC--------CcEEEEeccchHHHHHHHhh
Confidence 89999999999999999999999988632 357899999999 677776555 99999999999999999999
Q ss_pred CCceeEEeeecccccceeecccccCCcccccCcccccCCCcEEEEeCC
Q 000743 536 ASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 583 (1313)
Q Consensus 536 ~a~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~ 583 (1313)
-+.+..+.|.+... .+++.+.|+++|+|+.+
T Consensus 342 Lg~i~~i~F~~~g~-----------------rFissSDdks~riWe~~ 372 (503)
T KOG0282|consen 342 LGAILDITFVDEGR-----------------RFISSSDDKSVRIWENR 372 (503)
T ss_pred hhheeeeEEccCCc-----------------eEeeeccCccEEEEEcC
Confidence 99998887755211 34555669999999976
No 72
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.71 E-value=1.3e-15 Score=170.79 Aligned_cols=179 Identities=16% Similarity=0.198 Sum_probs=157.0
Q ss_pred CCCceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEE
Q 000743 316 GDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAA 395 (1313)
Q Consensus 316 ~~~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLaf 395 (1313)
++...+|..|.++|.++...|... .+++|+.|..-++ |+ ..++.....+.||++.|+|+.|
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~----l~aTGGgDD~Afl--W~-------------~~~ge~~~eltgHKDSVt~~~F 114 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNN----LVATGGGDDLAFL--WD-------------ISTGEFAGELTGHKDSVTCCSF 114 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCc----eEEecCCCceEEE--EE-------------ccCCcceeEecCCCCceEEEEE
Confidence 356789999999999955555433 4889999999888 64 3556678889999999999999
Q ss_pred eccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCC
Q 000743 396 HRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET 475 (1313)
Q Consensus 396 sP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t 475 (1313)
+ .|| .+|+||..+|.|+||+..++....++..-.+.+.=+.|||. ++.|+.|+.||++-+|.+.+
T Consensus 115 s-----hdg----tlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~------a~illAG~~DGsvWmw~ip~ 179 (399)
T KOG0296|consen 115 S-----HDG----TLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPR------AHILLAGSTDGSVWMWQIPS 179 (399)
T ss_pred c-----cCc----eEEEecCCCccEEEEEcccCceEEEeecccCceEEEEeccc------ccEEEeecCCCcEEEEECCC
Confidence 8 466 99999999999999999999988888767778888999997 79999999999999999999
Q ss_pred CcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCC
Q 000743 476 LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTA 536 (1313)
Q Consensus 476 ~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~ 536 (1313)
+...+.+.||..++++-.|.|+|+.++++..| |+|++||.+||+++.++.+..
T Consensus 180 ~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~d--------gti~~Wn~ktg~p~~~~~~~e 232 (399)
T KOG0296|consen 180 QALCKVMSGHNSPCTCGEFIPDGKRILTGYDD--------GTIIVWNPKTGQPLHKITQAE 232 (399)
T ss_pred cceeeEecCCCCCcccccccCCCceEEEEecC--------ceEEEEecCCCceeEEecccc
Confidence 88889999999999999999999999998776 999999999999998887544
No 73
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.71 E-value=1.4e-16 Score=182.15 Aligned_cols=206 Identities=21% Similarity=0.244 Sum_probs=152.6
Q ss_pred CEEEEEEcCCcEEEEEeeccccCCCCCCcc------ccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeC
Q 000743 343 YAIVYGFFSGEIEVIQFDLFERHNSPGASL------KVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSM 416 (1313)
Q Consensus 343 ~~LvsGs~DGsI~I~~wdll~~~~~~~~~w------dv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~ 416 (1313)
+.++.|+.|..|.||+.|+.-..-...... ..+.++.-..-.||++.|.+|+|+ ++..+.|+|||.
T Consensus 193 NyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n--------~~~~nVLaSgsa 264 (463)
T KOG0270|consen 193 NYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWN--------RNFRNVLASGSA 264 (463)
T ss_pred ceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhc--------cccceeEEecCC
Confidence 359999999999994443221110000000 111112222345899999999998 567899999999
Q ss_pred CCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEEcC
Q 000743 417 DCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDC 496 (1313)
Q Consensus 417 DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafsP 496 (1313)
|+||++||+.+|+|..++..|.+.|.++.|+|.. ...+++||.|++|++.|+|...+....-.-.+.|..++|+|
T Consensus 265 D~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~-----p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~ 339 (463)
T KOG0270|consen 265 DKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYE-----PSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDP 339 (463)
T ss_pred CceEEEEEcCCCCcceehhhcCCceeEEEecCCC-----ceEEEeccccceEEeeeccCccccCceEEeccceEEEEecC
Confidence 9999999999999999999999999999999986 58999999999999999995333221112235789999999
Q ss_pred CCCEEEEEecCCCCCCCCCCEEEEEECCC-CcEEEEEeCCCCceeEEeeecccccceeecccccCCcccccCcccccCCC
Q 000743 497 PRGYIACLCRDHSRTSDAVDVLFIWDVKT-GARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDG 575 (1313)
Q Consensus 497 dg~~Latgs~DlsGssD~DgtIrVWDlrT-G~lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~Dg 575 (1313)
.....+..+.| ||++|-+|+|+ |+++.+++.|.+.|....+. ...++.+...+.|+
T Consensus 340 ~se~~f~~~td-------dG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n----------------~~~p~~l~t~s~d~ 396 (463)
T KOG0270|consen 340 HSENSFFVSTD-------DGTVYYFDIRNPGKPVWTLKAHDDEISGLSVN----------------IQTPGLLSTASTDK 396 (463)
T ss_pred CCceeEEEecC-------CceEEeeecCCCCCceeEEEeccCCcceEEec----------------CCCCcceeeccccc
Confidence 88766554444 49999999998 59999999999988665332 22344555566799
Q ss_pred cEEEEeCCc
Q 000743 576 TFRQSQIQN 584 (1313)
Q Consensus 576 tIr~Wdl~~ 584 (1313)
++|+|++..
T Consensus 397 ~Vklw~~~~ 405 (463)
T KOG0270|consen 397 VVKLWKFDV 405 (463)
T ss_pred eEEEEeecC
Confidence 999999863
No 74
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.70 E-value=1.2e-15 Score=171.16 Aligned_cols=205 Identities=18% Similarity=0.237 Sum_probs=164.3
Q ss_pred CceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEec
Q 000743 318 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 397 (1313)
Q Consensus 318 ~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP 397 (1313)
....+.+|+.+|+++.+..+.. .|++|..+|.|+| |+ +.++.....+.+--+.+--+.|||
T Consensus 98 ~~~eltgHKDSVt~~~Fshdgt----lLATGdmsG~v~v--~~-------------~stg~~~~~~~~e~~dieWl~WHp 158 (399)
T KOG0296|consen 98 FAGELTGHKDSVTCCSFSHDGT----LLATGDMSGKVLV--FK-------------VSTGGEQWKLDQEVEDIEWLKWHP 158 (399)
T ss_pred ceeEecCCCCceEEEEEccCce----EEEecCCCccEEE--EE-------------cccCceEEEeecccCceEEEEecc
Confidence 4677899999999966665555 4999999999999 53 344455556655556678888996
Q ss_pred cccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCc
Q 000743 398 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR 477 (1313)
Q Consensus 398 ~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~ 477 (1313)
.+ ..|+.|+.||.+-+|.+.++...+.|.||..++++=.|.|+ |+.++++..|++|++||+.+++
T Consensus 159 -----~a----~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pd------GKr~~tgy~dgti~~Wn~ktg~ 223 (399)
T KOG0296|consen 159 -----RA----HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPD------GKRILTGYDDGTIIVWNPKTGQ 223 (399)
T ss_pred -----cc----cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCC------CceEEEEecCceEEEEecCCCc
Confidence 33 89999999999999999998889999999999999999999 7999999999999999998874
Q ss_pred EEEEec--------------------------------------------------------------------------
Q 000743 478 VERMFP-------------------------------------------------------------------------- 483 (1313)
Q Consensus 478 ~l~~l~-------------------------------------------------------------------------- 483 (1313)
++..+.
T Consensus 224 p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~ 303 (399)
T KOG0296|consen 224 PLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAAC 303 (399)
T ss_pred eeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhc
Confidence 433111
Q ss_pred ---------------------CCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEE
Q 000743 484 ---------------------GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFD 542 (1313)
Q Consensus 484 ---------------------gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~ 542 (1313)
.|...|+.+.|.+ ..||+++|.| |+||.||.|+|++..++.||+..|...
T Consensus 304 G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~--------g~v~~wDaRtG~l~~~y~GH~~~Il~f 374 (399)
T KOG0296|consen 304 GSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACAN--------GKVRQWDARTGQLKFTYTGHQMGILDF 374 (399)
T ss_pred ccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccC--------ceEEeeeccccceEEEEecCchheeEE
Confidence 4667789999998 7899998877 999999999999999999999999664
Q ss_pred eeecccccceeecccccCCcccccCcccccCCCcEEEEeC
Q 000743 543 HFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 582 (1313)
Q Consensus 543 ~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl 582 (1313)
...+ ....++ ++|.|++.|+...
T Consensus 375 ~ls~-~~~~vv----------------T~s~D~~a~VF~v 397 (399)
T KOG0296|consen 375 ALSP-QKRLVV----------------TVSDDNTALVFEV 397 (399)
T ss_pred EEcC-CCcEEE----------------EecCCCeEEEEec
Confidence 4332 111234 4445999998875
No 75
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.69 E-value=1.7e-16 Score=174.26 Aligned_cols=220 Identities=16% Similarity=0.256 Sum_probs=165.9
Q ss_pred CceecccCCceEEEEeeeecccccCCE--EEEEEcCCcEEEEEeeccccCCC--CCCccccCC-ceEEEEEecCCccEEE
Q 000743 318 GRDDFVHKEKIVSSSMVISESFYAPYA--IVYGFFSGEIEVIQFDLFERHNS--PGASLKVNS-HVSRQYFLGHTGAVLC 392 (1313)
Q Consensus 318 ~~~~~~~H~~~Vts~l~is~~~fsP~~--LvsGs~DGsI~I~~wdll~~~~~--~~~~wdv~t-g~~~~~L~GH~~~V~s 392 (1313)
+...+..|.+.+.+ ..|+|++ +++|+.|.+|+|.+-........ .+...+... ...+++|..|.+.|++
T Consensus 104 Et~ylt~HK~~cR~------aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~ 177 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRA------AAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVND 177 (430)
T ss_pred ceEEEeecccceee------eeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccc
Confidence 45678899999999 5666664 88999999999944321111100 111112222 2568899999999999
Q ss_pred EEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEE--eccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEE
Q 000743 393 LAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVM--HHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVAL 470 (1313)
Q Consensus 393 LafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~--~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~L 470 (1313)
+.||| ....|+||+.|++|+++|+......+-| .....+|.++.|||. |.+++.|.+..++++
T Consensus 178 l~FHP---------re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPs------GefllvgTdHp~~rl 242 (430)
T KOG0640|consen 178 LDFHP---------RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPS------GEFLLVGTDHPTLRL 242 (430)
T ss_pred eeecc---------hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCC------CceEEEecCCCceeE
Confidence 99998 2479999999999999998754332222 235679999999999 799999999999999
Q ss_pred EECCCCcEEEEe---cCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEe-CCCCceeEE-eee
Q 000743 471 ASLETLRVERMF---PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR-GTASHSMFD-HFC 545 (1313)
Q Consensus 471 WDL~t~~~l~~l---~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~-GH~a~Vi~~-~~c 545 (1313)
||+.+.+|.... .+|++.|+++.+++.++.-+||+.| |.|++||--++++++++. .|.+..++. .|.
T Consensus 243 Ydv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkD--------G~IklwDGVS~rCv~t~~~AH~gsevcSa~Ft 314 (430)
T KOG0640|consen 243 YDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKD--------GAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFT 314 (430)
T ss_pred EeccceeEeeecCcccccccceeEEEecCCccEEEEeccC--------CcEEeeccccHHHHHHHHhhcCCceeeeEEEc
Confidence 999999986544 4788899999999999999998887 999999999999998885 677665443 232
Q ss_pred cccccceeecccccCCcccccCcccccCCCcEEEEeCC
Q 000743 546 KGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 583 (1313)
Q Consensus 546 ~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~ 583 (1313)
. +|.+.. +...|.++|+|.|.
T Consensus 315 k------------n~kyiL-----sSG~DS~vkLWEi~ 335 (430)
T KOG0640|consen 315 K------------NGKYIL-----SSGKDSTVKLWEIS 335 (430)
T ss_pred c------------CCeEEe-----ecCCcceeeeeeec
Confidence 2 223433 33459999999985
No 76
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.69 E-value=4e-16 Score=180.22 Aligned_cols=203 Identities=22% Similarity=0.234 Sum_probs=158.7
Q ss_pred ecccCCceEEEEeeeecccccCC--EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEecc
Q 000743 321 DFVHKEKIVSSSMVISESFYAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRM 398 (1313)
Q Consensus 321 ~~~~H~~~Vts~l~is~~~fsP~--~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~ 398 (1313)
++......|++ ..|..+ .+++|...|.|+| ||. ++...++.+.+|+.+|..+.|+|
T Consensus 63 ~~srFk~~v~s------~~fR~DG~LlaaGD~sG~V~v--fD~-------------k~r~iLR~~~ah~apv~~~~f~~- 120 (487)
T KOG0310|consen 63 TFSRFKDVVYS------VDFRSDGRLLAAGDESGHVKV--FDM-------------KSRVILRQLYAHQAPVHVTKFSP- 120 (487)
T ss_pred hHHhhccceeE------EEeecCCeEEEccCCcCcEEE--ecc-------------ccHHHHHHHhhccCceeEEEecc-
Confidence 34445567777 444433 3777888899999 642 33345788999999999999997
Q ss_pred ccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCC-c
Q 000743 399 VGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL-R 477 (1313)
Q Consensus 399 ~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~-~ 477 (1313)
.| ...+++|++|+.+++||+.+......+.+|++.|++.+|+|.+ ++.++|||-||+|++||++.. .
T Consensus 121 ---~d----~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~-----~hivvtGsYDg~vrl~DtR~~~~ 188 (487)
T KOG0310|consen 121 ---QD----NTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPAN-----DHIVVTGSYDGKVRLWDTRSLTS 188 (487)
T ss_pred ---cC----CeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCC-----CeEEEecCCCceEEEEEeccCCc
Confidence 33 4899999999999999999998877899999999999999985 579999999999999999987 5
Q ss_pred EEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEE-EEEeCCCCceeEEeeecccccceeecc
Q 000743 478 VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARE-RVLRGTASHSMFDHFCKGISMNSISGS 556 (1313)
Q Consensus 478 ~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv-~~L~GH~a~Vi~~~~c~~~s~~ivSGS 556 (1313)
.+..+. |..+|..+.+-|.|..+++++- ..|+|||+-+|... ..+..|...|++..+.. +
T Consensus 189 ~v~eln-hg~pVe~vl~lpsgs~iasAgG---------n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s-------~-- 249 (487)
T KOG0310|consen 189 RVVELN-HGCPVESVLALPSGSLIASAGG---------NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS-------D-- 249 (487)
T ss_pred eeEEec-CCCceeeEEEcCCCCEEEEcCC---------CeEEEEEecCCceehhhhhcccceEEEEEeec-------C--
Confidence 556664 8889999999999999998653 69999999876544 44444999997765432 1
Q ss_pred cccCCcccccCcccccCCCcEEEEeCCc
Q 000743 557 VLNGNTSVSSLLLPIHEDGTFRQSQIQN 584 (1313)
Q Consensus 557 ~l~g~~l~S~~lvs~s~DgtIr~Wdl~~ 584 (1313)
+.-+.++++ |+.+|++++.+
T Consensus 250 ---~~rLlS~sL-----D~~VKVfd~t~ 269 (487)
T KOG0310|consen 250 ---STRLLSGSL-----DRHVKVFDTTN 269 (487)
T ss_pred ---CceEeeccc-----ccceEEEEccc
Confidence 123334444 99999999754
No 77
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.68 E-value=2.3e-15 Score=163.23 Aligned_cols=204 Identities=17% Similarity=0.197 Sum_probs=165.2
Q ss_pred ecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEecccc
Q 000743 321 DFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVG 400 (1313)
Q Consensus 321 ~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s 400 (1313)
.+++|..+++-+.|.-+.. .|.+++.|....+ |- ...|+.+.++.||++.|+|+...-
T Consensus 5 ~l~GHERplTqiKyN~eGD----LlFscaKD~~~~v--w~-------------s~nGerlGty~GHtGavW~~Did~--- 62 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGD----LLFSCAKDSTPTV--WY-------------SLNGERLGTYDGHTGAVWCCDIDW--- 62 (327)
T ss_pred ccccCccccceEEecCCCc----EEEEecCCCCceE--EE-------------ecCCceeeeecCCCceEEEEEecC---
Confidence 4678999998854444333 5888899999999 42 135688999999999999999862
Q ss_pred CCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCC-----CeEEEEECC-
Q 000743 401 TAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGED-----FSVALASLE- 474 (1313)
Q Consensus 401 ~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~D-----gtV~LWDL~- 474 (1313)
+...++|||.|.++++||+.+|+++.+++ ...+|..+.|+++ |++++...++ +.|.++|++
T Consensus 63 ------~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~------gn~~l~~tD~~mg~~~~v~~fdi~~ 129 (327)
T KOG0643|consen 63 ------DSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFG------GNLILASTDKQMGYTCFVSVFDIRD 129 (327)
T ss_pred ------CcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccC------CcEEEEEehhhcCcceEEEEEEccC
Confidence 34899999999999999999999999998 7789999999998 5666655543 578999998
Q ss_pred ------CCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCC-cEEEEEeCCCCceeEEeeecc
Q 000743 475 ------TLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG-ARERVLRGTASHSMFDHFCKG 547 (1313)
Q Consensus 475 ------t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG-~lv~~L~GH~a~Vi~~~~c~~ 547 (1313)
..++...+..+...++.+.|.|.+++|++|.+| |.|.+||+++| +.+..-+-|...+...++.+.
T Consensus 130 ~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~--------G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d 201 (327)
T KOG0643|consen 130 DSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHED--------GSISIYDARTGKELVDSDEEHSSKINDLQFSRD 201 (327)
T ss_pred ChhhhcccCceEEecCCccceeeeeecccCCEEEEecCC--------CcEEEEEcccCceeeechhhhccccccccccCC
Confidence 456788888898999999999999999998887 99999999998 556777889988877766542
Q ss_pred cccceeecccccCCcccccCcccccCCCcEEEEeCCc
Q 000743 548 ISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 584 (1313)
Q Consensus 548 ~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~~ 584 (1313)
.. .++..+.|.+-|+||...
T Consensus 202 ~T-----------------~FiT~s~Dttakl~D~~t 221 (327)
T KOG0643|consen 202 RT-----------------YFITGSKDTTAKLVDVRT 221 (327)
T ss_pred cc-----------------eEEecccCccceeeeccc
Confidence 22 234445699999999763
No 78
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.68 E-value=1.1e-15 Score=164.25 Aligned_cols=163 Identities=18% Similarity=0.256 Sum_probs=135.6
Q ss_pred eEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCC
Q 000743 378 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSD 457 (1313)
Q Consensus 378 ~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~ 457 (1313)
.+...+.||++.|..+.|.. .++.++|.+.|++||+||.++++.++++. ...+|+++.++++ |+
T Consensus 134 App~E~~ghtg~Ir~v~wc~---------eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~d------G~ 197 (334)
T KOG0278|consen 134 APPKEISGHTGGIRTVLWCH---------EDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQD------GR 197 (334)
T ss_pred CCchhhcCCCCcceeEEEec---------cCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccC------CC
Confidence 35567889999999999974 34678888999999999999999999997 7789999999999 44
Q ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEE-eCCC
Q 000743 458 CFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL-RGTA 536 (1313)
Q Consensus 458 ~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L-~GH~ 536 (1313)
+++.+.-++|++||..+...+..+.-. ..|.+...+|+..++++|++| ..++.||..||+.+..+ .||-
T Consensus 198 -ilTia~gssV~Fwdaksf~~lKs~k~P-~nV~SASL~P~k~~fVaGged--------~~~~kfDy~TgeEi~~~nkgh~ 267 (334)
T KOG0278|consen 198 -ILTIAYGSSVKFWDAKSFGLLKSYKMP-CNVESASLHPKKEFFVAGGED--------FKVYKFDYNTGEEIGSYNKGHF 267 (334)
T ss_pred -EEEEecCceeEEeccccccceeeccCc-cccccccccCCCceEEecCcc--------eEEEEEeccCCceeeecccCCC
Confidence 666777889999999999988877654 368899999999999998877 99999999999988886 8999
Q ss_pred CceeEEeeecccccceeecccccCCcccccCcccccCCCcEEEEeCC
Q 000743 537 SHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 583 (1313)
Q Consensus 537 a~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~ 583 (1313)
++|.++.|.+. .....+| |+|||||+|+..
T Consensus 268 gpVhcVrFSPd-GE~yAsG----------------SEDGTirlWQt~ 297 (334)
T KOG0278|consen 268 GPVHCVRFSPD-GELYASG----------------SEDGTIRLWQTT 297 (334)
T ss_pred CceEEEEECCC-Cceeecc----------------CCCceEEEEEec
Confidence 99988777651 1112233 359999999974
No 79
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.68 E-value=4.2e-16 Score=184.20 Aligned_cols=212 Identities=15% Similarity=0.224 Sum_probs=169.4
Q ss_pred CceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEec
Q 000743 318 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 397 (1313)
Q Consensus 318 ~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP 397 (1313)
.+..++.|.+.|+.+....... .++++++|-+|++ |+.... ..-+..+++.|++.|.|+++-.
T Consensus 65 ~~asme~HsDWVNDiiL~~~~~----tlIS~SsDtTVK~--W~~~~~-----------~~~c~stir~H~DYVkcla~~a 127 (735)
T KOG0308|consen 65 YIASMEHHSDWVNDIILCGNGK----TLISASSDTTVKV--WNAHKD-----------NTFCMSTIRTHKDYVKCLAYIA 127 (735)
T ss_pred hhhhhhhhHhHHhhHHhhcCCC----ceEEecCCceEEE--eecccC-----------cchhHhhhhcccchheeeeecc
Confidence 4678889999988754333332 5999999999999 653221 1146788999999999999831
Q ss_pred cccCCCCCccCcEEEEEeCCCcEEEEECCCC--ceEEEE--------e-ccCCCEEEEEECCCCCCCCCCCEEEEEeCCC
Q 000743 398 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG--NLITVM--------H-HHVAPVRQIILSPPQTEHPWSDCFLSVGEDF 466 (1313)
Q Consensus 398 ~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg--~~l~t~--------~-gH~~~V~sV~fsPd~~~~~~g~~LaSgS~Dg 466 (1313)
+ +..+++|||.|+.|++||++++ +.++++ . |+..+|++++.++. |..|++|+..+
T Consensus 128 ----k----~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t------~t~ivsGgtek 193 (735)
T KOG0308|consen 128 ----K----NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQT------GTIIVSGGTEK 193 (735)
T ss_pred ----c----CceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCc------ceEEEecCccc
Confidence 2 3489999999999999999987 333333 3 78889999999998 78999999999
Q ss_pred eEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEeeec
Q 000743 467 SVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCK 546 (1313)
Q Consensus 467 tV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~ 546 (1313)
.+++||.++++.+..++||+..|.++..++||..+++++.| |+|++||+...+++.++..|...|...+..+
T Consensus 194 ~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSD--------gtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~ 265 (735)
T KOG0308|consen 194 DLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSD--------GTIRLWDLGQQRCLATYIVHKEGVWALQSSP 265 (735)
T ss_pred ceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCC--------ceEEeeeccccceeeeEEeccCceEEEeeCC
Confidence 99999999999999999999999999999999999986655 9999999999999999999999985542222
Q ss_pred ccccceeecccccCCcccccCcccccCCCcEEEEeCCcc
Q 000743 547 GISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQND 585 (1313)
Q Consensus 547 ~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~~~ 585 (1313)
.+. .+++|. +|+.|..=++++.
T Consensus 266 sf~-~vYsG~----------------rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 266 SFT-HVYSGG----------------RDGNIYRTDLRNP 287 (735)
T ss_pred Ccc-eEEecC----------------CCCcEEecccCCc
Confidence 111 244443 5888988888764
No 80
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=3.6e-15 Score=157.80 Aligned_cols=215 Identities=19% Similarity=0.220 Sum_probs=168.4
Q ss_pred ecccCCceEEEEeeeecccccCC--EEEEEEcCCcEEEEEeeccccC-----------CCCC------------------
Q 000743 321 DFVHKEKIVSSSMVISESFYAPY--AIVYGFFSGEIEVIQFDLFERH-----------NSPG------------------ 369 (1313)
Q Consensus 321 ~~~~H~~~Vts~l~is~~~fsP~--~LvsGs~DGsI~I~~wdll~~~-----------~~~~------------------ 369 (1313)
..+.|.+.|+| ..|+|. .+++|+.|..|++..|+.-... +.+.
T Consensus 84 r~khhkgsiyc------~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s 157 (350)
T KOG0641|consen 84 RNKHHKGSIYC------TAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILAS 157 (350)
T ss_pred eccccCccEEE------EEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEe
Confidence 44679999999 555555 4899999999999887321000 0000
Q ss_pred ------C--ccccCCceEEEEEecCCccEEEEE-EeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEec--c-
Q 000743 370 ------A--SLKVNSHVSRQYFLGHTGAVLCLA-AHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH--H- 437 (1313)
Q Consensus 370 ------~--~wdv~tg~~~~~L~GH~~~V~sLa-fsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~g--H- 437 (1313)
+ .-|..+|+..+.+.||++-|.++- |+ | -.++|||.|++||+||++-..++.++.. |
T Consensus 158 ~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn-------~----~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~ 226 (350)
T KOG0641|consen 158 AGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWN-------G----AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHD 226 (350)
T ss_pred cCCCcceEEEeecCCCCcceeecCCcccEEEEEEec-------C----cEEEccCCCceEEEEeeeccceeeeccCcccC
Confidence 0 114557778889999999999874 32 2 6899999999999999999888887642 2
Q ss_pred ----CCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCC
Q 000743 438 ----VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSD 513 (1313)
Q Consensus 438 ----~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD 513 (1313)
++.|.+|+..|. |+++++|-.|.+..+||++.++.++.+..|...|.|+.|+|...|+++++.|
T Consensus 227 ~glessavaav~vdps------grll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd------ 294 (350)
T KOG0641|consen 227 GGLESSAVAAVAVDPS------GRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYD------ 294 (350)
T ss_pred CCcccceeEEEEECCC------cceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEeccc------
Confidence 357999999999 8999999999999999999999999999999999999999999999998776
Q ss_pred CCCEEEEEECCCC----cEEEEEeCCCCceeEEeeecccccceeecccccCCcccccCcccccCCCcEEEEeCC
Q 000743 514 AVDVLFIWDVKTG----ARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 583 (1313)
Q Consensus 514 ~DgtIrVWDlrTG----~lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~ 583 (1313)
.+|++-|+... -.+.++..|.+.++.+.|.+. .-++++.+.|+|+.+|-++
T Consensus 295 --~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~-----------------d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 295 --MKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQ-----------------DFSFISSSADKTATLWALN 349 (350)
T ss_pred --ceEEEeecccchhhcCceEEEEeccCceEEEEecCc-----------------cceeeeccCcceEEEeccC
Confidence 99999998631 234566789999988877541 1134556669999999764
No 81
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.68 E-value=6.5e-16 Score=173.62 Aligned_cols=169 Identities=24% Similarity=0.277 Sum_probs=135.2
Q ss_pred CCCceecccCCceEEEEeeeecccccCC---EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEE
Q 000743 316 GDGRDDFVHKEKIVSSSMVISESFYAPY---AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLC 392 (1313)
Q Consensus 316 ~~~~~~~~~H~~~Vts~l~is~~~fsP~---~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~s 392 (1313)
..++.++.+|.+.=++ ..|+|. ++++|-.-+.|++ |.... ..|.+. ...|.||+..|-.
T Consensus 201 ~~Pl~t~~ghk~EGy~------LdWSp~~~g~LlsGDc~~~I~l--w~~~~------g~W~vd----~~Pf~gH~~SVED 262 (440)
T KOG0302|consen 201 FRPLFTFNGHKGEGYG------LDWSPIKTGRLLSGDCVKGIHL--WEPST------GSWKVD----QRPFTGHTKSVED 262 (440)
T ss_pred cCceEEecccCcccee------eecccccccccccCccccceEe--eeecc------Cceeec----Cccccccccchhh
Confidence 4679999999999999 555553 3777777788888 65322 235442 3456789999999
Q ss_pred EEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCC---ceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEE
Q 000743 393 LAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG---NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVA 469 (1313)
Q Consensus 393 LafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg---~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~ 469 (1313)
|+|+|. ....|+|||.|++|+|||++.+ .++.+ +.|.+.|+-|.|+.. -.+|+||++||+++
T Consensus 263 LqWSpt--------E~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~------~~lLasG~DdGt~~ 327 (440)
T KOG0302|consen 263 LQWSPT--------EDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRR------EPLLASGGDDGTLS 327 (440)
T ss_pred hccCCc--------cCceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCC------cceeeecCCCceEE
Confidence 999972 3479999999999999999988 34444 789999999999987 35899999999999
Q ss_pred EEECCC---CcEEEEecCCCCCcEEEEEcCCCC-EEEEEecCCCCCCCCCCEEEEEECCC
Q 000743 470 LASLET---LRVERMFPGHPNYPAKVVWDCPRG-YIACLCRDHSRTSDAVDVLFIWDVKT 525 (1313)
Q Consensus 470 LWDL~t---~~~l~~l~gH~~~V~sVafsPdg~-~Latgs~DlsGssD~DgtIrVWDlrT 525 (1313)
|||+|. ++++..|..|..+|+++.|+|... .+++++.| .+|.+||+..
T Consensus 328 iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D--------~QitiWDlsv 379 (440)
T KOG0302|consen 328 IWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGED--------NQITIWDLSV 379 (440)
T ss_pred EEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCC--------CcEEEEEeec
Confidence 999985 468899999999999999999775 44544443 9999999853
No 82
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=4.9e-15 Score=176.69 Aligned_cols=208 Identities=18% Similarity=0.189 Sum_probs=168.2
Q ss_pred ceeccc-CCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEec
Q 000743 319 RDDFVH-KEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 397 (1313)
Q Consensus 319 ~~~~~~-H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP 397 (1313)
...+.+ |...|.+ ..|....+.+|+.||.|.. +|+.... ....++.+|...|..+.|+
T Consensus 252 ~~~~~~~h~~rvg~------laW~~~~lssGsr~~~I~~--~dvR~~~------------~~~~~~~~H~qeVCgLkws- 310 (484)
T KOG0305|consen 252 TRTLRGSHASRVGS------LAWNSSVLSSGSRDGKILN--HDVRISQ------------HVVSTLQGHRQEVCGLKWS- 310 (484)
T ss_pred cccccCCcCceeEE------EeccCceEEEecCCCcEEE--EEEecch------------hhhhhhhcccceeeeeEEC-
Confidence 445555 8999998 5666667999999999999 5432220 1122488999999999998
Q ss_pred cccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEe--CCCeEEEEECCC
Q 000743 398 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG--EDFSVALASLET 475 (1313)
Q Consensus 398 ~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS--~DgtV~LWDL~t 475 (1313)
+|| .+++||+.|+.+.|||....+++.++..|.+.|..++|+|-. ..+||+|+ .|++|++||..+
T Consensus 311 ----~d~----~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q-----~~lLAsGGGs~D~~i~fwn~~~ 377 (484)
T KOG0305|consen 311 ----PDG----NQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQ-----SGLLATGGGSADRCIKFWNTNT 377 (484)
T ss_pred ----CCC----CeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCc-----cCceEEcCCCcccEEEEEEcCC
Confidence 566 999999999999999999999999999999999999999985 46888876 599999999999
Q ss_pred CcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEeeecccccceeec
Q 000743 476 LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISG 555 (1313)
Q Consensus 476 ~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~~~s~~ivSG 555 (1313)
++.+..+... +.|..+.|++..+-|+++. |-++ +.|.||+..+-.++..+.||+..|+...+.+. ...+++|
T Consensus 378 g~~i~~vdtg-sQVcsL~Wsk~~kEi~sth----G~s~--n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPd-g~~i~t~ 449 (484)
T KOG0305|consen 378 GARIDSVDTG-SQVCSLIWSKKYKELLSTH----GYSE--NQITLWKYPSMKLVAELLGHTSRVLYLALSPD-GETIVTG 449 (484)
T ss_pred CcEecccccC-CceeeEEEcCCCCEEEEec----CCCC--CcEEEEeccccceeeeecCCcceeEEEEECCC-CCEEEEe
Confidence 9999887644 5899999999998777654 3344 89999999999999999999999987766542 2224444
Q ss_pred ccccCCcccccCcccccCCCcEEEEeCCc
Q 000743 556 SVLNGNTSVSSLLLPIHEDGTFRQSQIQN 584 (1313)
Q Consensus 556 S~l~g~~l~S~~lvs~s~DgtIr~Wdl~~ 584 (1313)
+ .|.|+|+|++-.
T Consensus 450 a----------------~DETlrfw~~f~ 462 (484)
T KOG0305|consen 450 A----------------ADETLRFWNLFD 462 (484)
T ss_pred c----------------ccCcEEeccccC
Confidence 3 399999999863
No 83
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.66 E-value=1.9e-15 Score=169.88 Aligned_cols=222 Identities=18% Similarity=0.209 Sum_probs=162.8
Q ss_pred ecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccC---CCCCCccccCCceEEEEEecCCccEEEEEEec
Q 000743 321 DFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERH---NSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 397 (1313)
Q Consensus 321 ~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~---~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP 397 (1313)
....|.+.++......-.. ....++=+..|.|.| |++.... +.....-.....+++.++.||.+.-++|+|+|
T Consensus 146 ~~i~h~g~~NRvr~~~~~~--~~~~aswse~G~V~V--w~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp 221 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGN--EVLCASWSENGRVQV--WDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSP 221 (440)
T ss_pred cccccccccceeeecccCC--cceeeeecccCcEEE--EEchhhhhhhcCccccccccccCceEEecccCccceeeeccc
Confidence 3456666666632222110 012445556789988 6542211 11111111134578999999999999999998
Q ss_pred cccCCCCCccCcEEEEEeCCCcEEEEECCCCce---EEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECC
Q 000743 398 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNL---ITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE 474 (1313)
Q Consensus 398 ~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~---l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~ 474 (1313)
. ..| .|+||..-+.|++|...+|.- ...|.+|+..|..++|+|.. ...|+|||.|++|+|||+|
T Consensus 222 ~---~~g-----~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE-----~~vfaScS~DgsIrIWDiR 288 (440)
T KOG0302|consen 222 I---KTG-----RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTE-----DGVFASCSCDGSIRIWDIR 288 (440)
T ss_pred c---ccc-----ccccCccccceEeeeeccCceeecCccccccccchhhhccCCcc-----CceEEeeecCceEEEEEec
Confidence 2 333 688999999999999988763 23577899999999999986 4799999999999999999
Q ss_pred CC---cEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCC---CcEEEEEeCCCCceeEEeeeccc
Q 000743 475 TL---RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT---GARERVLRGTASHSMFDHFCKGI 548 (1313)
Q Consensus 475 t~---~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrT---G~lv~~L~GH~a~Vi~~~~c~~~ 548 (1313)
.+ .++.+ +.|.+.|+.|.|+-...+|++|+.| |+++|||+|+ ++.+..++-|.++++++.|.+.-
T Consensus 289 s~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~Dd--------Gt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e 359 (440)
T KOG0302|consen 289 SGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDD--------GTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHE 359 (440)
T ss_pred CCCccceeEe-eccCCceeeEEccCCcceeeecCCC--------ceEEEEEhhhccCCCcceeEEeccCCeeEEEecccc
Confidence 88 44544 8899999999999999988886655 9999999986 78899999999999998886522
Q ss_pred ccceeecccccCCcccccCcccccCCCcEEEEeCCc
Q 000743 549 SMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 584 (1313)
Q Consensus 549 s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~~ 584 (1313)
.. -+...+.|.+|.+||+.-
T Consensus 360 ~s----------------~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 360 DS----------------VIAASGEDNQITIWDLSV 379 (440)
T ss_pred Cc----------------eEEeccCCCcEEEEEeec
Confidence 21 112233499999999854
No 84
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.66 E-value=3.5e-15 Score=164.00 Aligned_cols=207 Identities=15% Similarity=0.171 Sum_probs=164.7
Q ss_pred CCceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEe
Q 000743 317 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAH 396 (1313)
Q Consensus 317 ~~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafs 396 (1313)
-+...|.+|...|.++-++.... .+++++.|.+-.+ ||+++++.++.|.||....+-+.-|
T Consensus 263 vPl~~ltgH~~vV~a~dWL~gg~----Q~vTaSWDRTAnl---------------wDVEtge~v~~LtGHd~ELtHcstH 323 (481)
T KOG0300|consen 263 VPLMRLTGHRAVVSACDWLAGGQ----QMVTASWDRTANL---------------WDVETGEVVNILTGHDSELTHCSTH 323 (481)
T ss_pred eeeeeeeccccceEehhhhcCcc----eeeeeecccccee---------------eeeccCceeccccCcchhccccccC
Confidence 35778999999999977766555 5888887777666 5779999999999999999988888
Q ss_pred ccccCCCCCccCcEEEEEeCCCcEEEEECCC-CceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCC
Q 000743 397 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS-GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET 475 (1313)
Q Consensus 397 P~~s~pDGr~~~~~LaSGS~DgtIrVWDl~t-g~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t 475 (1313)
| .++++++.|.|.+.|+||++. -..+..|+||+..|+++.|..+ ..++|+++|.+|++||+++
T Consensus 324 p---------tQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-------d~vVSgSDDrTvKvWdLrN 387 (481)
T KOG0300|consen 324 P---------TQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-------DRVVSGSDDRTVKVWDLRN 387 (481)
T ss_pred C---------cceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-------CceeecCCCceEEEeeecc
Confidence 6 358999999999999999983 3467889999999999999887 6799999999999999997
Q ss_pred Cc-EEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEE-----EeCCCCceeEEeeecccc
Q 000743 476 LR-VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV-----LRGTASHSMFDHFCKGIS 549 (1313)
Q Consensus 476 ~~-~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~-----L~GH~a~Vi~~~~c~~~s 549 (1313)
.+ ++.+++- .++++.++.+..++.|+.-..+ ..|++||+.. ..+.. -+||.--|.++.|..+-
T Consensus 388 MRsplATIRt-dS~~NRvavs~g~~iIAiPhDN--------RqvRlfDlnG-~RlaRlPrtsRqgHrRMV~c~AW~eeh- 456 (481)
T KOG0300|consen 388 MRSPLATIRT-DSPANRVAVSKGHPIIAIPHDN--------RQVRLFDLNG-NRLARLPRTSRQGHRRMVTCCAWLEEH- 456 (481)
T ss_pred ccCcceeeec-CCccceeEeecCCceEEeccCC--------ceEEEEecCC-CccccCCcccccccceeeeeeeccccC-
Confidence 65 5667764 4588999999888888865444 8999999954 43333 35999888777775421
Q ss_pred cceeecccccCCcccccCcccccCCCcEEEEeCC
Q 000743 550 MNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 583 (1313)
Q Consensus 550 ~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~ 583 (1313)
....++++..|+.+--|+++
T Consensus 457 --------------p~cnLftcGFDR~v~gW~in 476 (481)
T KOG0300|consen 457 --------------PACNLFTCGFDRMVAGWKIN 476 (481)
T ss_pred --------------cccccccccccceeeeeEec
Confidence 11334566669999999986
No 85
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.66 E-value=5.3e-15 Score=177.06 Aligned_cols=158 Identities=18% Similarity=0.279 Sum_probs=139.5
Q ss_pred CceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCC
Q 000743 326 EKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGW 405 (1313)
Q Consensus 326 ~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr 405 (1313)
...|-|..+.|+.. .++.|--|.++.|+..| +-+....|.||.=+|.|+..+| |+
T Consensus 508 ~ddvL~v~~Spdgk----~LaVsLLdnTVkVyflD---------------tlKFflsLYGHkLPV~smDIS~-----DS- 562 (888)
T KOG0306|consen 508 EDDVLCVSVSPDGK----LLAVSLLDNTVKVYFLD---------------TLKFFLSLYGHKLPVLSMDISP-----DS- 562 (888)
T ss_pred cccEEEEEEcCCCc----EEEEEeccCeEEEEEec---------------ceeeeeeecccccceeEEeccC-----Cc-
Confidence 45677744444444 38889999999996554 3466788999999999999984 55
Q ss_pred ccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC
Q 000743 406 SFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGH 485 (1313)
Q Consensus 406 ~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH 485 (1313)
..++|||.|++|++|-++-|.|-+.|.+|.+.|.+|.|.|. .+.|.|+|.|+.|+-||-+..++++++.+|
T Consensus 563 ---klivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~------~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H 633 (888)
T KOG0306|consen 563 ---KLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPK------THLFFTCGKDGKVKQWDGEKFEEIQKLDGH 633 (888)
T ss_pred ---CeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEccc------ceeEEEecCcceEEeechhhhhhheeeccc
Confidence 89999999999999999999999999999999999999998 589999999999999999999999999999
Q ss_pred CCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCC
Q 000743 486 PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 525 (1313)
Q Consensus 486 ~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrT 525 (1313)
...|+|++..|+|.|+++++.| .+|++|....
T Consensus 634 ~~ev~cLav~~~G~~vvs~shD--------~sIRlwE~td 665 (888)
T KOG0306|consen 634 HSEVWCLAVSPNGSFVVSSSHD--------KSIRLWERTD 665 (888)
T ss_pred hheeeeeEEcCCCCeEEeccCC--------ceeEeeeccC
Confidence 9999999999999999998887 9999998643
No 86
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.66 E-value=5e-16 Score=186.53 Aligned_cols=212 Identities=17% Similarity=0.211 Sum_probs=162.9
Q ss_pred CceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEec
Q 000743 318 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 397 (1313)
Q Consensus 318 ~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP 397 (1313)
.+..|..|...|++ +.-..+.|+.|++|+.||.|++ ||+ +..+...++.+....|.++.|+|
T Consensus 125 ~l~~f~EH~Rs~~~---ldfh~tep~iliSGSQDg~vK~--~Dl-------------R~~~S~~t~~~nSESiRDV~fsp 186 (839)
T KOG0269|consen 125 LLTVFNEHERSANK---LDFHSTEPNILISGSQDGTVKC--WDL-------------RSKKSKSTFRSNSESIRDVKFSP 186 (839)
T ss_pred hhhHhhhhccceee---eeeccCCccEEEecCCCceEEE--Eee-------------ecccccccccccchhhhceeecc
Confidence 45688999999999 3334456778999999999999 654 34466788888999999999998
Q ss_pred cccCCCCCccCcEEEEEeCCCcEEEEECCCC-ceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCC
Q 000743 398 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG-NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL 476 (1313)
Q Consensus 398 ~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg-~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~ 476 (1313)
.+ +..++++.+.|.+++||++.. ++...+..|.++|.++.|+|+ +.+|||||.|++|+|||..+.
T Consensus 187 ----~~----~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPn------r~~lATGGRDK~vkiWd~t~~ 252 (839)
T KOG0269|consen 187 ----GY----GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPN------REWLATGGRDKMVKIWDMTDS 252 (839)
T ss_pred ----CC----CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCC------CceeeecCCCccEEEEeccCC
Confidence 23 389999999999999999954 578889999999999999998 689999999999999999876
Q ss_pred cEEEEecCCC-CCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCC-cEEEEEeCCCCceeEEeeecccccceee
Q 000743 477 RVERMFPGHP-NYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG-ARERVLRGTASHSMFDHFCKGISMNSIS 554 (1313)
Q Consensus 477 ~~l~~l~gH~-~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG-~lv~~L~GH~a~Vi~~~~c~~~s~~ivS 554 (1313)
+.-....-++ .+|.+|+|.|+..+.+..|.- . .|..|+|||++.. -+.+++..|+..++.++|
T Consensus 253 ~~~~~~tInTiapv~rVkWRP~~~~hLAtcsm----v-~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W---------- 317 (839)
T KOG0269|consen 253 RAKPKHTINTIAPVGRVKWRPARSYHLATCSM----V-VDTSVHVWDVRRPYIPYATFLEHTDSVTGIAW---------- 317 (839)
T ss_pred CccceeEEeecceeeeeeeccCccchhhhhhc----c-ccceEEEEeeccccccceeeeccCccccceec----------
Confidence 5433333233 478899999998876554431 2 2589999999865 356888999988876655
Q ss_pred cccccCCcccccCcccccCCCcEEEEeC
Q 000743 555 GSVLNGNTSVSSLLLPIHEDGTFRQSQI 582 (1313)
Q Consensus 555 GS~l~g~~l~S~~lvs~s~DgtIr~Wdl 582 (1313)
+......+++++.|+++.+-.+
T Consensus 318 ------~~~d~~~l~s~sKD~tv~qh~~ 339 (839)
T KOG0269|consen 318 ------DSGDRINLWSCSKDGTVLQHLF 339 (839)
T ss_pred ------cCCCceeeEeecCccHHHHhhh
Confidence 2222334566667776655443
No 87
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.66 E-value=2.8e-15 Score=177.31 Aligned_cols=179 Identities=18% Similarity=0.205 Sum_probs=149.3
Q ss_pred CCceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEe-cCCccEEEEEE
Q 000743 317 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFL-GHTGAVLCLAA 395 (1313)
Q Consensus 317 ~~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~-GH~~~V~sLaf 395 (1313)
.+..++..|.+-|.|+.|+....+ .+++|+-|+.|++ ||+....+......+ ......+. ||...|++++-
T Consensus 108 ~c~stir~H~DYVkcla~~ak~~~---lvaSgGLD~~Ifl--WDin~~~~~l~~s~n---~~t~~sl~sG~k~siYSLA~ 179 (735)
T KOG0308|consen 108 FCMSTIRTHKDYVKCLAYIAKNNE---LVASGGLDRKIFL--WDINTGTATLVASFN---NVTVNSLGSGPKDSIYSLAM 179 (735)
T ss_pred hhHhhhhcccchheeeeecccCce---eEEecCCCccEEE--EEccCcchhhhhhcc---ccccccCCCCCccceeeeec
Confidence 467788999999999888654443 6899999999999 654322110000011 12233444 99999999998
Q ss_pred eccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCC
Q 000743 396 HRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET 475 (1313)
Q Consensus 396 sP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t 475 (1313)
++ .| ..+++|+..+.+++||.++.+.+.++.||+..|..+..+++ |..++|+|.|++|++||+..
T Consensus 180 N~-----t~----t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dD------Gt~~ls~sSDgtIrlWdLgq 244 (735)
T KOG0308|consen 180 NQ-----TG----TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDD------GTRLLSASSDGTIRLWDLGQ 244 (735)
T ss_pred CC-----cc----eEEEecCcccceEEeccccccceeeeeccccceEEEEEcCC------CCeEeecCCCceEEeeeccc
Confidence 74 44 79999999999999999999999999999999999999999 78999999999999999999
Q ss_pred CcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCC
Q 000743 476 LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 526 (1313)
Q Consensus 476 ~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG 526 (1313)
.+|+.++..|...|+++.-+|+-.++++|+.| |.|+.=|+++.
T Consensus 245 QrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd--------~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 245 QRCLATYIVHKEGVWALQSSPSFTHVYSGGRD--------GNIYRTDLRNP 287 (735)
T ss_pred cceeeeEEeccCceEEEeeCCCcceEEecCCC--------CcEEecccCCc
Confidence 99999999999999999999999999998777 99999999985
No 88
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.66 E-value=1.9e-15 Score=172.13 Aligned_cols=188 Identities=19% Similarity=0.247 Sum_probs=158.3
Q ss_pred EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEE
Q 000743 344 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 423 (1313)
Q Consensus 344 ~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVW 423 (1313)
.+.+|+.|....+ +| ..+++.+.+|+||+..|+.+.|+| ....++++|.|..|+||
T Consensus 233 ~ilTGG~d~~av~--~d-------------~~s~q~l~~~~Gh~kki~~v~~~~---------~~~~v~~aSad~~i~vw 288 (506)
T KOG0289|consen 233 KILTGGEDKTAVL--FD-------------KPSNQILATLKGHTKKITSVKFHK---------DLDTVITASADEIIRVW 288 (506)
T ss_pred cceecCCCCceEE--Ee-------------cchhhhhhhccCcceEEEEEEecc---------chhheeecCCcceEEee
Confidence 5899999999888 53 245678899999999999999996 23789999999999999
Q ss_pred ECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC--CcEEEEEcCCCCEE
Q 000743 424 DLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN--YPAKVVWDCPRGYI 501 (1313)
Q Consensus 424 Dl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~--~V~sVafsPdg~~L 501 (1313)
......+......|.++|+.+..+|. |.||++++.|++..+.|++++.++.......+ .+++.+|||||..+
T Consensus 289 s~~~~s~~~~~~~h~~~V~~ls~h~t------geYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLif 362 (506)
T KOG0289|consen 289 SVPLSSEPTSSRPHEEPVTGLSLHPT------GEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIF 362 (506)
T ss_pred ccccccCccccccccccceeeeeccC------CcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEE
Confidence 99988888888899999999999999 79999999999999999999998876654322 46899999999999
Q ss_pred EEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEeeecccccceeecccccCCcccccCcccccCCCcEEEEe
Q 000743 502 ACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 581 (1313)
Q Consensus 502 atgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wd 581 (1313)
.+|..| +.++|||+.++..+..|.||+++|..+.|.. ||=+++.. +.|+.|++||
T Consensus 363 gtgt~d--------~~vkiwdlks~~~~a~Fpght~~vk~i~FsE------------NGY~Lat~-----add~~V~lwD 417 (506)
T KOG0289|consen 363 GTGTPD--------GVVKIWDLKSQTNVAKFPGHTGPVKAISFSE------------NGYWLATA-----ADDGSVKLWD 417 (506)
T ss_pred eccCCC--------ceEEEEEcCCccccccCCCCCCceeEEEecc------------CceEEEEE-----ecCCeEEEEE
Confidence 987665 9999999999999999999999998887753 22233222 2477799999
Q ss_pred CCccc
Q 000743 582 IQNDE 586 (1313)
Q Consensus 582 l~~~~ 586 (1313)
+++..
T Consensus 418 LRKl~ 422 (506)
T KOG0289|consen 418 LRKLK 422 (506)
T ss_pred ehhhc
Confidence 98644
No 89
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.64 E-value=5e-14 Score=167.16 Aligned_cols=210 Identities=19% Similarity=0.264 Sum_probs=167.3
Q ss_pred cCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCC
Q 000743 324 HKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAK 403 (1313)
Q Consensus 324 ~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pD 403 (1313)
+-+..+.++.+.++.. .|++|..-|.++|+... ..+....+..|...|.||.|+- |+
T Consensus 457 d~r~G~R~~~vSp~gq----hLAsGDr~GnlrVy~Lq---------------~l~~~~~~eAHesEilcLeyS~----p~ 513 (1080)
T KOG1408|consen 457 DSRFGFRALAVSPDGQ----HLASGDRGGNLRVYDLQ---------------ELEYTCFMEAHESEILCLEYSF----PV 513 (1080)
T ss_pred CcccceEEEEECCCcc----eecccCccCceEEEEeh---------------hhhhhhheecccceeEEEeecC----ch
Confidence 3445677744444444 38888888999995442 1234556789999999999973 33
Q ss_pred CCccCcEEEEEeCCCcEEEEECC-CCceEEEEeccCCCEEEEEECCCCCC------------------------------
Q 000743 404 GWSFNEVLVSGSMDCSIRIWDLG-SGNLITVMHHHVAPVRQIILSPPQTE------------------------------ 452 (1313)
Q Consensus 404 Gr~~~~~LaSGS~DgtIrVWDl~-tg~~l~t~~gH~~~V~sV~fsPd~~~------------------------------ 452 (1313)
- ...+|+|||.|+.|+|+|.. ...+++++.+|...|++|.|.-.+..
T Consensus 514 ~--~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t 591 (1080)
T KOG1408|consen 514 L--TNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHT 591 (1080)
T ss_pred h--hhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccc
Confidence 2 45799999999999999986 44678899999999999999765411
Q ss_pred -------------CCCCCEEEEEeCCCeEEEEECCCCcEEEEecC---CCCCcEEEEEcCCCCEEEEEecCCCCCCCCCC
Q 000743 453 -------------HPWSDCFLSVGEDFSVALASLETLRVERMFPG---HPNYPAKVVWDCPRGYIACLCRDHSRTSDAVD 516 (1313)
Q Consensus 453 -------------~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~g---H~~~V~sVafsPdg~~Latgs~DlsGssD~Dg 516 (1313)
.|...++++++.|+.|+|||++.++..+.|+| |.+....+..+|.|.||+|.|.| +
T Consensus 592 ~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsd--------k 663 (1080)
T KOG1408|consen 592 QTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSD--------K 663 (1080)
T ss_pred cccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecC--------C
Confidence 24468999999999999999999999999975 55678899999999999998877 9
Q ss_pred EEEEEECCCCcEEEEEeCCCCceeEEeeecccccceeecccccCCcccccCcccccCCCcEEEEeCC
Q 000743 517 VLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 583 (1313)
Q Consensus 517 tIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~ 583 (1313)
++.++|+-+|+++..+.||...|+.+.|.+.. -.+++++.|+.|-+|.+.
T Consensus 664 tl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDC-----------------kHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 664 TLCFVDFVSGECVAQMTGHSEAVTGVKFLNDC-----------------KHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred ceEEEEeccchhhhhhcCcchheeeeeecccc-----------------hhheeecCCceEEEEECc
Confidence 99999999999999999999999888775421 134566679999999985
No 90
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.64 E-value=4.3e-15 Score=168.67 Aligned_cols=202 Identities=21% Similarity=0.248 Sum_probs=157.9
Q ss_pred CCceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEe
Q 000743 317 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAH 396 (1313)
Q Consensus 317 ~~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafs 396 (1313)
....+|.+|.+.|++..+.-... ++++|+.|.+|+. ||+ ....|.+++.- ...++++..+
T Consensus 252 r~~~TLsGHtdkVt~ak~~~~~~----~vVsgs~DRtiK~--WDl-------------~k~~C~kt~l~-~S~cnDI~~~ 311 (459)
T KOG0288|consen 252 RLRHTLSGHTDKVTAAKFKLSHS----RVVSGSADRTIKL--WDL-------------QKAYCSKTVLP-GSQCNDIVCS 311 (459)
T ss_pred hhhhhhcccccceeeehhhcccc----ceeeccccchhhh--hhh-------------hhhheeccccc-cccccceEec
Confidence 34678999999999943222222 4899999999999 654 33344444322 2235566654
Q ss_pred ccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCC
Q 000743 397 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL 476 (1313)
Q Consensus 397 P~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~ 476 (1313)
+ ..++||-.|++||+||++++.+......+. .|+++..+++ +..+.+.+.|.++.+.|+++.
T Consensus 312 ~-----------~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~------g~~lLsssRDdtl~viDlRt~ 373 (459)
T KOG0288|consen 312 I-----------SDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMD------GLELLSSSRDDTLKVIDLRTK 373 (459)
T ss_pred c-----------eeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccC------CeEEeeecCCCceeeeecccc
Confidence 3 578999999999999999999999998766 8999999999 678888899999999999999
Q ss_pred cEEEEecCC----CCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCc--eeEEeeeccccc
Q 000743 477 RVERMFPGH----PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASH--SMFDHFCKGISM 550 (1313)
Q Consensus 477 ~~l~~l~gH----~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~--Vi~~~~c~~~s~ 550 (1313)
+..+.+... ....+.+.|+|++.|+++|+.| |.|+||++.+|+++..+.+.+.. ++++.||+
T Consensus 374 eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~d--------gsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~---- 441 (459)
T KOG0288|consen 374 EIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSAD--------GSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNP---- 441 (459)
T ss_pred cEEEEeeccccccccccceeEECCCCceeeeccCC--------CcEEEEEccCceEEEEeccCCCCcceEEEEEcC----
Confidence 887777532 1247899999999999997776 99999999999999999876655 88887875
Q ss_pred ceeecccccCCcccccCcccccCCCcEEEEe
Q 000743 551 NSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 581 (1313)
Q Consensus 551 ~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wd 581 (1313)
+|+ +++++++++.+.+|.
T Consensus 442 ---sG~----------~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 442 ---SGS----------GLLSADKQKAVTLWT 459 (459)
T ss_pred ---CCc----------hhhcccCCcceEecC
Confidence 343 567778888899883
No 91
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=7.8e-14 Score=147.82 Aligned_cols=219 Identities=16% Similarity=0.226 Sum_probs=157.2
Q ss_pred cCCceEEEEeeeecccccCCE--EEEEEcCCcEEEEEeeccccC-CCCCCccccCCceEEEEEecCCccEEEEEEecccc
Q 000743 324 HKEKIVSSSMVISESFYAPYA--IVYGFFSGEIEVIQFDLFERH-NSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVG 400 (1313)
Q Consensus 324 ~H~~~Vts~l~is~~~fsP~~--LvsGs~DGsI~I~~wdll~~~-~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s 400 (1313)
...+.|.+ +.|+|.+ .+.|+.+.+.+|+.+.-+... ..+.. .........+.-+.|++.|.|.+|+
T Consensus 30 ~dsqaira------v~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea-~~~pp~v~~kr~khhkgsiyc~~ws---- 98 (350)
T KOG0641|consen 30 EDSQAIRA------VAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEA-AKQPPSVLCKRNKHHKGSIYCTAWS---- 98 (350)
T ss_pred cchhheee------EEecCCCceEEeccCCceEEEEccccccCccccccc-ccCCCeEEeeeccccCccEEEEEec----
Confidence 34456666 7888884 678888999999876322111 00000 0001112233446789999999999
Q ss_pred CCCCCccCcEEEEEeCCCcEEEEECCCCce-----EEEEeccCCCEEEEEECCCCCC-----------------------
Q 000743 401 TAKGWSFNEVLVSGSMDCSIRIWDLGSGNL-----ITVMHHHVAPVRQIILSPPQTE----------------------- 452 (1313)
Q Consensus 401 ~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~-----l~t~~gH~~~V~sV~fsPd~~~----------------------- 452 (1313)
|+| +++++||.|++|++.-.+...+ -..|.-|.+.|+.++|-.+...
T Consensus 99 -~~g----eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g 173 (350)
T KOG0641|consen 99 -PCG----ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRG 173 (350)
T ss_pred -Ccc----CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCC
Confidence 567 9999999999999987764432 2346667888888887643110
Q ss_pred ----------------CCC-CCEEEEEeCCCeEEEEECCCCcEEEEecC--C-----CCCcEEEEEcCCCCEEEEEecCC
Q 000743 453 ----------------HPW-SDCFLSVGEDFSVALASLETLRVERMFPG--H-----PNYPAKVVWDCPRGYIACLCRDH 508 (1313)
Q Consensus 453 ----------------~~~-g~~LaSgS~DgtV~LWDL~t~~~l~~l~g--H-----~~~V~sVafsPdg~~Latgs~Dl 508 (1313)
-.| +-.|+||+.|.+|++||++-..++.++.. | .+.|..++.+|.|+.|++|..|
T Consensus 174 ~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~d- 252 (350)
T KOG0641|consen 174 QGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHAD- 252 (350)
T ss_pred CcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCC-
Confidence 012 45899999999999999999999887742 2 2368899999999999998777
Q ss_pred CCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEeeecccccceeecccccCCcccccCcccccCCCcEEEEeCC
Q 000743 509 SRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 583 (1313)
Q Consensus 509 sGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~ 583 (1313)
.+..+||+|.|+.++.+..|++.+.++.|++... ...+++ -|..||+=|++
T Consensus 253 -------ssc~lydirg~r~iq~f~phsadir~vrfsp~a~-yllt~s----------------yd~~ikltdlq 303 (350)
T KOG0641|consen 253 -------SSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAH-YLLTCS----------------YDMKIKLTDLQ 303 (350)
T ss_pred -------CceEEEEeeCCceeeeeCCCccceeEEEeCCCce-EEEEec----------------ccceEEEeecc
Confidence 8999999999999999999999998888765221 234444 38889998875
No 92
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.62 E-value=1.9e-15 Score=169.19 Aligned_cols=207 Identities=18% Similarity=0.245 Sum_probs=159.3
Q ss_pred CCCCCceecccCCceEEEEeeeecccccCC---EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccE
Q 000743 314 QAGDGRDDFVHKEKIVSSSMVISESFYAPY---AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAV 390 (1313)
Q Consensus 314 ~~~~~~~~~~~H~~~Vts~l~is~~~fsP~---~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V 390 (1313)
.+...+..+.+|.+.|.| ..-+|. .+++|+.||.|++ |++ .+..+..+|..|.|.|
T Consensus 54 fakPFv~~L~gHrdGV~~------lakhp~~ls~~aSGs~DG~Vki--Wnl-------------sqR~~~~~f~AH~G~V 112 (433)
T KOG0268|consen 54 FAKPFVGSLDGHRDGVSC------LAKHPNKLSTVASGSCDGEVKI--WNL-------------SQRECIRTFKAHEGLV 112 (433)
T ss_pred hhccchhhccccccccch------hhcCcchhhhhhccccCceEEE--Eeh-------------hhhhhhheeecccCce
Confidence 344567788999999999 555555 4899999999999 653 4557889999999999
Q ss_pred EEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCC---------------------------C-----------ceEE
Q 000743 391 LCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS---------------------------G-----------NLIT 432 (1313)
Q Consensus 391 ~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~t---------------------------g-----------~~l~ 432 (1313)
.++++.. ..++++++|++|+.|.+.- | .++.
T Consensus 113 ~Gi~v~~-----------~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~ 181 (433)
T KOG0268|consen 113 RGICVTQ-----------TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVS 181 (433)
T ss_pred eeEEecc-----------cceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccc
Confidence 9999962 6789999999999997431 1 1233
Q ss_pred EEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCC
Q 000743 433 VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTS 512 (1313)
Q Consensus 433 t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGss 512 (1313)
.+.--...|.++.|+|..+ ..|++++.|++|.|||++++.+++.+.-- -..+.++|+|..-.+++|.+|
T Consensus 182 smswG~Dti~svkfNpvET-----sILas~~sDrsIvLyD~R~~~Pl~KVi~~-mRTN~IswnPeafnF~~a~ED----- 250 (433)
T KOG0268|consen 182 SMSWGADSISSVKFNPVET-----SILASCASDRSIVLYDLRQASPLKKVILT-MRTNTICWNPEAFNFVAANED----- 250 (433)
T ss_pred eeecCCCceeEEecCCCcc-----hheeeeccCCceEEEecccCCccceeeee-ccccceecCccccceeecccc-----
Confidence 3333345678888888753 78999999999999999999988766422 355789999966666665555
Q ss_pred CCCCEEEEEECCC-CcEEEEEeCCCCceeEEeeecccccceeecccccCCcccccCcccccCCCcEEEEeCC
Q 000743 513 DAVDVLFIWDVKT-GARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 583 (1313)
Q Consensus 513 D~DgtIrVWDlrT-G~lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~ 583 (1313)
..+|.+|++. .+.+.+..+|.+.|+.+.|++ +|. ..+++++ |.+||++..+
T Consensus 251 ---~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsp-------tG~-----Efvsgsy-----DksIRIf~~~ 302 (433)
T KOG0268|consen 251 ---HNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSP-------TGQ-----EFVSGSY-----DKSIRIFPVN 302 (433)
T ss_pred ---ccceehhhhhhcccchhhcccceeEEEeccCC-------Ccc-----hhccccc-----cceEEEeecC
Confidence 9999999998 467899999999999998876 332 2333333 9999999875
No 93
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=5.2e-16 Score=185.09 Aligned_cols=183 Identities=22% Similarity=0.265 Sum_probs=161.0
Q ss_pred CceecccCCceEEEEeeeecccccCC--EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEE
Q 000743 318 GRDDFVHKEKIVSSSMVISESFYAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAA 395 (1313)
Q Consensus 318 ~~~~~~~H~~~Vts~l~is~~~fsP~--~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLaf 395 (1313)
++..|.+|...|.| ..|++. .++.|+.+|+|++ ||+ +.++.+++|.||...+.++.|
T Consensus 62 ~i~S~~~hespIeS------l~f~~~E~LlaagsasgtiK~--wDl-------------eeAk~vrtLtgh~~~~~sv~f 120 (825)
T KOG0267|consen 62 AITSLTGHESPIES------LTFDTSERLLAAGSASGTIKV--WDL-------------EEAKIVRTLTGHLLNITSVDF 120 (825)
T ss_pred hhheeeccCCccee------eecCcchhhhcccccCCceee--eeh-------------hhhhhhhhhhccccCcceeee
Confidence 45568999999999 555555 4888999999999 654 556788999999999999999
Q ss_pred eccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCC
Q 000743 396 HRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET 475 (1313)
Q Consensus 396 sP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t 475 (1313)
|| -| .+.++||.|+.+++||++..-|.+.+.+|...|..+.|.|+ |.+++++++|+++++||+..
T Consensus 121 ~P-----~~----~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~------Gr~v~~g~ed~tvki~d~~a 185 (825)
T KOG0267|consen 121 HP-----YG----EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPD------GRWVASGGEDNTVKIWDLTA 185 (825)
T ss_pred cc-----ce----EEeccccccccceehhhhccCceeeecCCcceeEEEeecCC------CceeeccCCcceeeeecccc
Confidence 97 23 78899999999999999988899999999999999999999 78999999999999999999
Q ss_pred CcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEee
Q 000743 476 LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHF 544 (1313)
Q Consensus 476 ~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~ 544 (1313)
|+....|.+|.+.+..+.|||..-.+++|+.| +++++||++|-+.+....+....|.+..|
T Consensus 186 gk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d--------~tv~f~dletfe~I~s~~~~~~~v~~~~f 246 (825)
T KOG0267|consen 186 GKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSD--------RTVRFWDLETFEVISSGKPETDGVRSLAF 246 (825)
T ss_pred cccccccccccccccccccCchhhhhccCCCC--------ceeeeeccceeEEeeccCCccCCceeeee
Confidence 99999999999999999999999888886665 99999999998888777777777755544
No 94
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.62 E-value=7.1e-15 Score=167.60 Aligned_cols=178 Identities=18% Similarity=0.199 Sum_probs=151.3
Q ss_pred CCCceecccCCceEEEEeeeecccccCC--EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEE
Q 000743 316 GDGRDDFVHKEKIVSSSMVISESFYAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCL 393 (1313)
Q Consensus 316 ~~~~~~~~~H~~~Vts~l~is~~~fsP~--~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sL 393 (1313)
.+....|.||...|+. ..|+|+ .+++++.|..|+| |.. ...........|.++|+.+
T Consensus 251 ~q~l~~~~Gh~kki~~------v~~~~~~~~v~~aSad~~i~v--ws~-------------~~~s~~~~~~~h~~~V~~l 309 (506)
T KOG0289|consen 251 NQILATLKGHTKKITS------VKFHKDLDTVITASADEIIRV--WSV-------------PLSSEPTSSRPHEEPVTGL 309 (506)
T ss_pred hhhhhhccCcceEEEE------EEeccchhheeecCCcceEEe--ecc-------------ccccCccccccccccceee
Confidence 3457789999999999 555555 4889999999999 642 2223456678999999999
Q ss_pred EEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCC--CEEEEEECCCCCCCCCCCEEEEEeCCCeEEEE
Q 000743 394 AAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVA--PVRQIILSPPQTEHPWSDCFLSVGEDFSVALA 471 (1313)
Q Consensus 394 afsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~--~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LW 471 (1313)
..|| .| +||+++|.|++..+.|+++|.++.+...... .+++.+|||| |.+|.+|..|+.|++|
T Consensus 310 s~h~-----tg----eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpD------gLifgtgt~d~~vkiw 374 (506)
T KOG0289|consen 310 SLHP-----TG----EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPD------GLIFGTGTPDGVVKIW 374 (506)
T ss_pred eecc-----CC----cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCC------ceEEeccCCCceEEEE
Confidence 9985 45 8999999999999999999998877763222 4899999999 7999999999999999
Q ss_pred ECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCC
Q 000743 472 SLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTAS 537 (1313)
Q Consensus 472 DL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a 537 (1313)
|+..+..+..|++|+++|..++|+.+|-||++++.| +.|++||+|.-+..+++.-...
T Consensus 375 dlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add--------~~V~lwDLRKl~n~kt~~l~~~ 432 (506)
T KOG0289|consen 375 DLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADD--------GSVKLWDLRKLKNFKTIQLDEK 432 (506)
T ss_pred EcCCccccccCCCCCCceeEEEeccCceEEEEEecC--------CeEEEEEehhhcccceeecccc
Confidence 999999999999999999999999999999998887 8899999999887777765443
No 95
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.8e-14 Score=171.97 Aligned_cols=200 Identities=21% Similarity=0.219 Sum_probs=162.6
Q ss_pred CceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEec-CCccEEEEEEeccccCCCC
Q 000743 326 EKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLG-HTGAVLCLAAHRMVGTAKG 404 (1313)
Q Consensus 326 ~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~G-H~~~V~sLafsP~~s~pDG 404 (1313)
...|++..|.++.. .|++|..+|.|.| || .++.+....+.+ |...|-+++|+.
T Consensus 217 ~~~vtSv~ws~~G~----~LavG~~~g~v~i--wD-------------~~~~k~~~~~~~~h~~rvg~laW~~------- 270 (484)
T KOG0305|consen 217 EELVTSVKWSPDGS----HLAVGTSDGTVQI--WD-------------VKEQKKTRTLRGSHASRVGSLAWNS------- 270 (484)
T ss_pred CCceEEEEECCCCC----EEEEeecCCeEEE--Ee-------------hhhccccccccCCcCceeEEEeccC-------
Confidence 67888855554444 4999999999999 64 344566778888 999999999973
Q ss_pred CccCcEEEEEeCCCcEEEEECCCCceEEE-EeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEec
Q 000743 405 WSFNEVLVSGSMDCSIRIWDLGSGNLITV-MHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFP 483 (1313)
Q Consensus 405 r~~~~~LaSGS~DgtIrVWDl~tg~~l~t-~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~ 483 (1313)
..+.+|+.|+.|..+|++..+.... +.+|...|..+.|+++ +.+++||+.|+.+.|||....+++..+.
T Consensus 271 ----~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d------~~~lASGgnDN~~~Iwd~~~~~p~~~~~ 340 (484)
T KOG0305|consen 271 ----SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPD------GNQLASGGNDNVVFIWDGLSPEPKFTFT 340 (484)
T ss_pred ----ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCC------CCeeccCCCccceEeccCCCccccEEEe
Confidence 7899999999999999998876555 8999999999999999 7999999999999999998889999999
Q ss_pred CCCCCcEEEEEcCCC-CEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEeeecccccceeecccccCCc
Q 000743 484 GHPNYPAKVVWDCPR-GYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNT 562 (1313)
Q Consensus 484 gH~~~V~sVafsPdg-~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS~l~g~~ 562 (1313)
.|...|..++|+|-. ..||+|+ |+.| ++|++||..+|++++.+.... .|..+.|.....+ ++++-
T Consensus 341 ~H~aAVKA~awcP~q~~lLAsGG----Gs~D--~~i~fwn~~~g~~i~~vdtgs-QVcsL~Wsk~~kE-i~sth------ 406 (484)
T KOG0305|consen 341 EHTAAVKALAWCPWQSGLLATGG----GSAD--RCIKFWNTNTGARIDSVDTGS-QVCSLIWSKKYKE-LLSTH------ 406 (484)
T ss_pred ccceeeeEeeeCCCccCceEEcC----CCcc--cEEEEEEcCCCcEecccccCC-ceeeEEEcCCCCE-EEEec------
Confidence 999999999999965 5777765 5666 999999999999998876543 6777778763322 22221
Q ss_pred ccccCcccccCCCcEEEEeCC
Q 000743 563 SVSSLLLPIHEDGTFRQSQIQ 583 (1313)
Q Consensus 563 l~S~~lvs~s~DgtIr~Wdl~ 583 (1313)
. ..+..|.+|+..
T Consensus 407 ----G----~s~n~i~lw~~p 419 (484)
T KOG0305|consen 407 ----G----YSENQITLWKYP 419 (484)
T ss_pred ----C----CCCCcEEEEecc
Confidence 1 135579999974
No 96
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.60 E-value=9.1e-13 Score=159.90 Aligned_cols=198 Identities=23% Similarity=0.321 Sum_probs=155.4
Q ss_pred CCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEE---ecCCccEEEEEEeccccC
Q 000743 325 KEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYF---LGHTGAVLCLAAHRMVGT 401 (1313)
Q Consensus 325 H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L---~GH~~~V~sLafsP~~s~ 401 (1313)
....++|+.......| .+.|+..|+|.+ ++ +++|.....| ..|.++|++++..
T Consensus 447 ~~~~~~av~vs~CGNF----~~IG~S~G~Id~--fN-------------mQSGi~r~sf~~~~ah~~~V~gla~D----- 502 (910)
T KOG1539|consen 447 DDINATAVCVSFCGNF----VFIGYSKGTIDR--FN-------------MQSGIHRKSFGDSPAHKGEVTGLAVD----- 502 (910)
T ss_pred cCcceEEEEEeccCce----EEEeccCCeEEE--EE-------------cccCeeecccccCccccCceeEEEec-----
Confidence 3456666544444443 788999999999 53 3555566666 5899999999975
Q ss_pred CCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 000743 402 AKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERM 481 (1313)
Q Consensus 402 pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~ 481 (1313)
| -++.++|++.||.+++||.....++..+. -...+..+..+.. ...++.+.+|-.|+++|..+.+.++.
T Consensus 503 --~--~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr~------s~l~a~~~ddf~I~vvD~~t~kvvR~ 571 (910)
T KOG1539|consen 503 --G--TNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHRV------SDLLAIALDDFSIRVVDVVTRKVVRE 571 (910)
T ss_pred --C--CCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeeeh------hhhhhhhcCceeEEEEEchhhhhhHH
Confidence 2 34789999999999999999998888887 5567888888877 57899999999999999999999999
Q ss_pred ecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEeeecccccceeecccccCC
Q 000743 482 FPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGN 561 (1313)
Q Consensus 482 l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS~l~g~ 561 (1313)
|.||.+.++.++|+|||++|++++.| ++||+||+-|+.++..+.-.. ..+.+.|.+ +|+
T Consensus 572 f~gh~nritd~~FS~DgrWlisasmD--------~tIr~wDlpt~~lID~~~vd~-~~~sls~SP------------ngD 630 (910)
T KOG1539|consen 572 FWGHGNRITDMTFSPDGRWLISASMD--------STIRTWDLPTGTLIDGLLVDS-PCTSLSFSP------------NGD 630 (910)
T ss_pred hhccccceeeeEeCCCCcEEEEeecC--------CcEEEEeccCcceeeeEecCC-cceeeEECC------------CCC
Confidence 99999999999999999999998887 999999999999987765433 333443433 345
Q ss_pred cccccCcccccCC-CcEEEEeCC
Q 000743 562 TSVSSLLLPIHED-GTFRQSQIQ 583 (1313)
Q Consensus 562 ~l~S~~lvs~s~D-gtIr~Wdl~ 583 (1313)
++++... | .-|.+|--+
T Consensus 631 ~LAT~Hv-----d~~gIylWsNk 648 (910)
T KOG1539|consen 631 FLATVHV-----DQNGIYLWSNK 648 (910)
T ss_pred EEEEEEe-----cCceEEEEEch
Confidence 6554432 5 348899644
No 97
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=2e-13 Score=151.75 Aligned_cols=215 Identities=16% Similarity=0.220 Sum_probs=157.0
Q ss_pred eecccCCceEEEEeeeecccccCC--EEEEEEcCCcEEEEEeeccccC-------------------------------C
Q 000743 320 DDFVHKEKIVSSSMVISESFYAPY--AIVYGFFSGEIEVIQFDLFERH-------------------------------N 366 (1313)
Q Consensus 320 ~~~~~H~~~Vts~l~is~~~fsP~--~LvsGs~DGsI~I~~wdll~~~-------------------------------~ 366 (1313)
+.|....+.|++ ..|+++ .+++.++|.++++++- ..+. +
T Consensus 8 k~f~~~~~~i~s------l~fs~~G~~litss~dDsl~LYd~--~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d 79 (311)
T KOG1446|consen 8 KVFRETNGKINS------LDFSDDGLLLITSSEDDSLRLYDS--LSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKED 79 (311)
T ss_pred cccccCCCceeE------EEecCCCCEEEEecCCCeEEEEEc--CCCceeeEeecccccccEEEEecCCceEEEccCCCC
Confidence 344455677777 455555 3777788889988642 1110 1
Q ss_pred CCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEE
Q 000743 367 SPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIIL 446 (1313)
Q Consensus 367 ~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~f 446 (1313)
...+.-++.+.+.++.|.||+..|++|..+| .++.++|+|.|++||+||++..+|...+..-..+| .+|
T Consensus 80 ~tIryLsl~dNkylRYF~GH~~~V~sL~~sP---------~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~Af 148 (311)
T KOG1446|consen 80 DTIRYLSLHDNKYLRYFPGHKKRVNSLSVSP---------KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAF 148 (311)
T ss_pred CceEEEEeecCceEEEcCCCCceEEEEEecC---------CCCeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeE
Confidence 1222235667889999999999999999997 23789999999999999999999888876444444 679
Q ss_pred CCCCCCCCCCCEEEEEeCCCeEEEEECCCC--cEEEEecC---CCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEE
Q 000743 447 SPPQTEHPWSDCFLSVGEDFSVALASLETL--RVERMFPG---HPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIW 521 (1313)
Q Consensus 447 sPd~~~~~~g~~LaSgS~DgtV~LWDL~t~--~~l~~l~g---H~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVW 521 (1313)
.|+ |-++|.+.....|+|||+|.. .+-.++.- .....+.+.|+|+|++|+.+... +.+++-
T Consensus 149 Dp~------GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~--------s~~~~l 214 (311)
T KOG1446|consen 149 DPE------GLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA--------SFIYLL 214 (311)
T ss_pred CCC------CcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC--------CcEEEE
Confidence 998 788888888789999999964 34444432 24567899999999999986655 899999
Q ss_pred ECCCCcEEEEEeCCCCce---eEEeeecccccceeecccccCCcccccCcccccCCCcEEEEeCCc
Q 000743 522 DVKTGARERVLRGTASHS---MFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 584 (1313)
Q Consensus 522 DlrTG~lv~~L~GH~a~V---i~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~~ 584 (1313)
|.-+|....++++|...- ....|.+ .+..+++|+ .||+|.+|+++.
T Consensus 215 DAf~G~~~~tfs~~~~~~~~~~~a~ftP-ds~Fvl~gs----------------~dg~i~vw~~~t 263 (311)
T KOG1446|consen 215 DAFDGTVKSTFSGYPNAGNLPLSATFTP-DSKFVLSGS----------------DDGTIHVWNLET 263 (311)
T ss_pred EccCCcEeeeEeeccCCCCcceeEEECC-CCcEEEEec----------------CCCcEEEEEcCC
Confidence 999999999999988654 2222323 122234443 389999999864
No 98
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=1.2e-14 Score=170.59 Aligned_cols=284 Identities=13% Similarity=0.178 Sum_probs=188.1
Q ss_pred eeEEEeeecccccccccccccccceeEEEEecCCCeEEEEEec--cccccccccccccCcccCCCCCceeEEEEEeeeee
Q 000743 152 GAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISY--MNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYL 229 (1313)
Q Consensus 152 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~vw~~~~~~~vy~~~~--~~~~~~~~~~~~~p~~~~~~~~~~~i~~iq~~~~l 229 (1313)
+|.||++|++ +++++||...|+|||+.++. ...+..|.|...+|.+....+.. +.++. ..++
T Consensus 411 ~G~wlasGsd-------------DGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~--~~ivn-p~~G 474 (733)
T KOG0650|consen 411 SGEWLASGSD-------------DGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGEC--VLIVN-PIFG 474 (733)
T ss_pred CcceeeecCC-------------CCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCc--eEEeC-cccc
Confidence 7999999999 99999999999999977744 45788999999999998888774 22222 1111
Q ss_pred EEEEeeee--------ccCCCccccceEEEEEec------------ccCCCCCceeEEeecCCeeeeeeecceeeeCCCC
Q 000743 230 LRMETVCF--------HVEETSQWRPYISVWSLS------------QKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEG 289 (1313)
Q Consensus 230 v~i~svc~--------d~e~~l~W~p~vtVWsl~------------~~~~~~~~q~~~~g~~~~~~dWiss~l~~~~~dG 289 (1313)
-+++.... ..+++ ...+..|.=. -++...-++....++|+++ ..+.+++
T Consensus 475 ~~~e~~~t~ell~~~~~~~~p---~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYl--------atV~~~~ 543 (733)
T KOG0650|consen 475 DRLEVGPTKELLASAPNESEP---DAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYL--------ATVMPDS 543 (733)
T ss_pred chhhhcchhhhhhcCCCccCC---cccceeechhhhhhhccceEEEEecCCccceeeeecCCceE--------EEeccCC
Confidence 11110000 11111 0123344221 2233334455566666555 2333322
Q ss_pred eeeeeeccccccccccccccccCCCCCCCceecccCCceEEEEeeeecccccCCE--EEEEEcCCcEEEEEeeccccCCC
Q 000743 290 SCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYA--IVYGFFSGEIEVIQFDLFERHNS 367 (1313)
Q Consensus 290 i~Iwk~~~ss~~~~i~~l~~~~~~~~~~~~~~~~~H~~~Vts~l~is~~~fsP~~--LvsGs~DGsI~I~~wdll~~~~~ 367 (1313)
.+....+..+++.. .+..|..-.+.|.+ ..|+|.. ++. +....|+|+++ ..
T Consensus 544 --------~~~~VliHQLSK~~------sQ~PF~kskG~vq~------v~FHPs~p~lfV-aTq~~vRiYdL--~k---- 596 (733)
T KOG0650|consen 544 --------GNKSVLIHQLSKRK------SQSPFRKSKGLVQR------VKFHPSKPYLFV-ATQRSVRIYDL--SK---- 596 (733)
T ss_pred --------CcceEEEEeccccc------ccCchhhcCCceeE------EEecCCCceEEE-EeccceEEEeh--hH----
Confidence 11222223222211 13345555666777 5666663 444 46788999443 22
Q ss_pred CCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCC-CceEEEEeccCCCEEEEEE
Q 000743 368 PGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS-GNLITVMHHHVAPVRQIIL 446 (1313)
Q Consensus 368 ~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~t-g~~l~t~~gH~~~V~sV~f 446 (1313)
...++.|......|..++.|| .| ..|+.|+.|+.++++|+.- .++.+++..|...|++|+|
T Consensus 597 ---------qelvKkL~tg~kwiS~msihp-----~G----Dnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~ 658 (733)
T KOG0650|consen 597 ---------QELVKKLLTGSKWISSMSIHP-----NG----DNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAF 658 (733)
T ss_pred ---------HHHHHHHhcCCeeeeeeeecC-----CC----CeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhh
Confidence 234445555566789999984 55 7889999999999999984 4688889999999999999
Q ss_pred CCCCCCCCCCCEEEEEeCCCeEEEEECCC------C---cEEEEecCCCCC----cEEEEEcCCCCEEEEEecCCCCCCC
Q 000743 447 SPPQTEHPWSDCFLSVGEDFSVALASLET------L---RVERMFPGHPNY----PAKVVWDCPRGYIACLCRDHSRTSD 513 (1313)
Q Consensus 447 sPd~~~~~~g~~LaSgS~DgtV~LWDL~t------~---~~l~~l~gH~~~----V~sVafsPdg~~Latgs~DlsGssD 513 (1313)
|+. -.+||||+.|+++.++.-.- . -++..++||... |..+.|||...+|++++.|
T Consensus 659 H~r------yPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd------ 726 (733)
T KOG0650|consen 659 HKR------YPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGAD------ 726 (733)
T ss_pred ccc------cceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCC------
Confidence 998 57999999999999985321 1 256788899654 7889999999999997766
Q ss_pred CCCEEEEE
Q 000743 514 AVDVLFIW 521 (1313)
Q Consensus 514 ~DgtIrVW 521 (1313)
|+|++|
T Consensus 727 --~tirlf 732 (733)
T KOG0650|consen 727 --GTIRLF 732 (733)
T ss_pred --ceEEee
Confidence 999998
No 99
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=4.1e-14 Score=163.05 Aligned_cols=200 Identities=17% Similarity=0.194 Sum_probs=157.7
Q ss_pred CceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCC
Q 000743 326 EKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGW 405 (1313)
Q Consensus 326 ~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr 405 (1313)
++.|.|+...+... .++.|+..|.+.+ | .+.+|..+..+.+|-..|+|+.|+ -||
T Consensus 81 Pg~v~al~s~n~G~----~l~ag~i~g~lYl--W-------------elssG~LL~v~~aHYQ~ITcL~fs-----~dg- 135 (476)
T KOG0646|consen 81 PGPVHALASSNLGY----FLLAGTISGNLYL--W-------------ELSSGILLNVLSAHYQSITCLKFS-----DDG- 135 (476)
T ss_pred ccceeeeecCCCce----EEEeecccCcEEE--E-------------EeccccHHHHHHhhccceeEEEEe-----CCC-
Confidence 35666633223233 3666669999999 5 457788899999999999999998 455
Q ss_pred ccCcEEEEEeCCCcEEEEECC---------CCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCC
Q 000743 406 SFNEVLVSGSMDCSIRIWDLG---------SGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL 476 (1313)
Q Consensus 406 ~~~~~LaSGS~DgtIrVWDl~---------tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~ 476 (1313)
.+|+|||.||.|++|++. +-++++.|..|+-+|+++...+.++ ...++|+|.|+++++||+..+
T Consensus 136 ---s~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~----~~rl~TaS~D~t~k~wdlS~g 208 (476)
T KOG0646|consen 136 ---SHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGT----NARLYTASEDRTIKLWDLSLG 208 (476)
T ss_pred ---cEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCc----cceEEEecCCceEEEEEeccc
Confidence 899999999999999874 3468999999999999999988743 468999999999999999999
Q ss_pred cEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCC----------------CcEEEEEeCCCC--c
Q 000743 477 RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT----------------GARERVLRGTAS--H 538 (1313)
Q Consensus 477 ~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrT----------------G~lv~~L~GH~a--~ 538 (1313)
..+.++.-. ..+.+++.+|.++.+++|.++ |.|++-++.+ +..++.+.||.+ .
T Consensus 209 ~LLlti~fp-~si~av~lDpae~~~yiGt~~--------G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ 279 (476)
T KOG0646|consen 209 VLLLTITFP-SSIKAVALDPAERVVYIGTEE--------GKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESA 279 (476)
T ss_pred eeeEEEecC-CcceeEEEcccccEEEecCCc--------ceEEeeehhcCCcccccccccccccccceeeeeccccCCcc
Confidence 998887643 478999999999999997776 9999887643 345678889998 7
Q ss_pred eeEEeeecccccceeecccccCCcccccCcccccCCCcEEEEeCC
Q 000743 539 SMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 583 (1313)
Q Consensus 539 Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~ 583 (1313)
|++...|. +|+ .+.+ -..||++++||+.
T Consensus 280 ITcLais~-------Dgt-----lLlS-----Gd~dg~VcvWdi~ 307 (476)
T KOG0646|consen 280 ITCLAIST-------DGT-----LLLS-----GDEDGKVCVWDIY 307 (476)
T ss_pred eeEEEEec-------Ccc-----EEEe-----eCCCCCEEEEecc
Confidence 75544432 343 3333 3459999999985
No 100
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=1.2e-13 Score=159.15 Aligned_cols=196 Identities=17% Similarity=0.175 Sum_probs=158.9
Q ss_pred CCceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEe
Q 000743 317 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAH 396 (1313)
Q Consensus 317 ~~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafs 396 (1313)
..+..+..|-..|+|+.+..+.. .+++|+.||.|.+|..-.+...+ +..+-++.+.|.+|+-+|+++...
T Consensus 114 ~LL~v~~aHYQ~ITcL~fs~dgs----~iiTgskDg~V~vW~l~~lv~a~------~~~~~~p~~~f~~HtlsITDl~ig 183 (476)
T KOG0646|consen 114 ILLNVLSAHYQSITCLKFSDDGS----HIITGSKDGAVLVWLLTDLVSAD------NDHSVKPLHIFSDHTLSITDLQIG 183 (476)
T ss_pred cHHHHHHhhccceeEEEEeCCCc----EEEecCCCccEEEEEEEeecccc------cCCCccceeeeccCcceeEEEEec
Confidence 34667889999999976666655 59999999999994332111111 111447899999999999999986
Q ss_pred ccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCC
Q 000743 397 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL 476 (1313)
Q Consensus 397 P~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~ 476 (1313)
+ .| -..+++|+|.|.++|+||+..|..+.++. ....+.+++..|. +..+..|+.||.|.+.++...
T Consensus 184 ~-----Gg--~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpa------e~~~yiGt~~G~I~~~~~~~~ 249 (476)
T KOG0646|consen 184 S-----GG--TNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPA------ERVVYIGTEEGKIFQNLLFKL 249 (476)
T ss_pred C-----CC--ccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEccc------ccEEEecCCcceEEeeehhcC
Confidence 4 22 34689999999999999999999999887 6778999999998 578999999999998887532
Q ss_pred ----------------cEEEEecCCCC--CcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCc
Q 000743 477 ----------------RVERMFPGHPN--YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASH 538 (1313)
Q Consensus 477 ----------------~~l~~l~gH~~--~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~ 538 (1313)
.....+.||.+ .|+|++.+-||..|++|++| |+|.|||+.+.+++|++..-.++
T Consensus 250 ~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~d--------g~VcvWdi~S~Q~iRtl~~~kgp 321 (476)
T KOG0646|consen 250 SGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDED--------GKVCVWDIYSKQCIRTLQTSKGP 321 (476)
T ss_pred CcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCC--------CCEEEEecchHHHHHHHhhhccc
Confidence 34567889988 89999999999999998776 99999999999999999877777
Q ss_pred eeEEee
Q 000743 539 SMFDHF 544 (1313)
Q Consensus 539 Vi~~~~ 544 (1313)
|+..++
T Consensus 322 VtnL~i 327 (476)
T KOG0646|consen 322 VTNLQI 327 (476)
T ss_pred cceeEe
Confidence 766644
No 101
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.58 E-value=1.4e-14 Score=163.71 Aligned_cols=172 Identities=18% Similarity=0.243 Sum_probs=138.7
Q ss_pred EEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCC-------ceEEEEeccCCCEEEEEECCCCCC
Q 000743 380 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG-------NLITVMHHHVAPVRQIILSPPQTE 452 (1313)
Q Consensus 380 ~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg-------~~l~t~~gH~~~V~sV~fsPd~~~ 452 (1313)
.-.+.||++.|..++|+|. +++.|+|||.|.+|.||++..+ +++..+.+|...|--|+|||.-
T Consensus 74 ~P~v~GHt~~vLDi~w~Pf--------nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA-- 143 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDIDWCPF--------NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTA-- 143 (472)
T ss_pred CCCccCccccccccccCcc--------CCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccc--
Confidence 3456799999999999982 3589999999999999998743 4678899999999999999984
Q ss_pred CCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEE
Q 000743 453 HPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL 532 (1313)
Q Consensus 453 ~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L 532 (1313)
.+.++|++.|++|.+||+.+++.+.++. |.+-|+++.|+-+|.+++|.|.| +.|||||.++|+.+.+-
T Consensus 144 ---~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckD--------KkvRv~dpr~~~~v~e~ 211 (472)
T KOG0303|consen 144 ---PNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKD--------KKVRVIDPRRGTVVSEG 211 (472)
T ss_pred ---hhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeeccc--------ceeEEEcCCCCcEeeec
Confidence 4789999999999999999999999988 99999999999999999999998 99999999999999888
Q ss_pred eCCCCceeE-EeeecccccceeecccccCCcccccCcccccCCCcEEEEeCCcccc
Q 000743 533 RGTASHSMF-DHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDER 587 (1313)
Q Consensus 533 ~GH~a~Vi~-~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~~~~~ 587 (1313)
.+|.+.--. +.|-. +|.. .+..+ +-.+|+.+-+|+-.+.+.
T Consensus 212 ~~heG~k~~Raifl~-------~g~i------~tTGf-sr~seRq~aLwdp~nl~e 253 (472)
T KOG0303|consen 212 VAHEGAKPARAIFLA-------SGKI------FTTGF-SRMSERQIALWDPNNLEE 253 (472)
T ss_pred ccccCCCcceeEEec-------cCce------eeecc-ccccccceeccCcccccC
Confidence 888764321 22221 1111 11111 122477899999776553
No 102
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.58 E-value=1.3e-13 Score=159.68 Aligned_cols=207 Identities=18% Similarity=0.235 Sum_probs=155.5
Q ss_pred ecccCCceEEEEeeeecccccCC---EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEE-----ecCCccEEE
Q 000743 321 DFVHKEKIVSSSMVISESFYAPY---AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYF-----LGHTGAVLC 392 (1313)
Q Consensus 321 ~~~~H~~~Vts~l~is~~~fsP~---~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L-----~GH~~~V~s 392 (1313)
.-.||...++| .+|+|. .+++++.||+++| |+.... + +..+.+ .|-.-.|+.
T Consensus 263 nTKGHia~lt~------g~whP~~k~~FlT~s~DgtlRi--Wdv~~~----------k--~q~qVik~k~~~g~Rv~~ts 322 (641)
T KOG0772|consen 263 NTKGHIAELTC------GCWHPDNKEEFLTCSYDGTLRI--WDVNNT----------K--SQLQVIKTKPAGGKRVPVTS 322 (641)
T ss_pred ccCCceeeeec------cccccCcccceEEecCCCcEEE--EecCCc----------h--hheeEEeeccCCCcccCcee
Confidence 34689999999 788887 3889999999999 654221 1 122222 244456889
Q ss_pred EEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCc--e-EEEEeccCC--CEEEEEECCCCCCCCCCCEEEEEeCCCe
Q 000743 393 LAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN--L-ITVMHHHVA--PVRQIILSPPQTEHPWSDCFLSVGEDFS 467 (1313)
Q Consensus 393 LafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~--~-l~t~~gH~~--~V~sV~fsPd~~~~~~g~~LaSgS~Dgt 467 (1313)
++|+ +|| .+|++|..||+|.+||..... + ...-..|.. .|+||.|+++ |++|+|-|.|.+
T Consensus 323 C~~n-----rdg----~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~d------g~~LlSRg~D~t 387 (641)
T KOG0772|consen 323 CAWN-----RDG----KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYD------GNYLLSRGFDDT 387 (641)
T ss_pred eecC-----CCc----chhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccc------cchhhhccCCCc
Confidence 9998 577 889999999999999986443 1 223345776 8999999999 899999999999
Q ss_pred EEEEECCCC-cEEEEecCCCC--CcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEee
Q 000743 468 VALASLETL-RVERMFPGHPN--YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHF 544 (1313)
Q Consensus 468 V~LWDL~t~-~~l~~l~gH~~--~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~ 544 (1313)
+++||++.. +++....+-.. +-+.++|+|+.+.|+||..-.-++.- |++++||..|-+.+..+.--++.|+.+.|
T Consensus 388 LKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~--g~L~f~d~~t~d~v~ki~i~~aSvv~~~W 465 (641)
T KOG0772|consen 388 LKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTA--GTLFFFDRMTLDTVYKIDISTASVVRCLW 465 (641)
T ss_pred eeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCC--ceEEEEeccceeeEEEecCCCceEEEEee
Confidence 999999975 46666555433 34689999999999998765334444 89999999999999998888888888888
Q ss_pred ecccccceeecccccCCcccccCcccccCCCcEEEEe
Q 000743 545 CKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 581 (1313)
Q Consensus 545 c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wd 581 (1313)
.+.+.. ++-|+ .||++++.-
T Consensus 466 hpkLNQ-i~~gs----------------gdG~~~vyY 485 (641)
T KOG0772|consen 466 HPKLNQ-IFAGS----------------GDGTAHVYY 485 (641)
T ss_pred cchhhh-eeeec----------------CCCceEEEE
Confidence 765442 33332 288888874
No 103
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.57 E-value=5.5e-14 Score=162.85 Aligned_cols=215 Identities=18% Similarity=0.215 Sum_probs=148.9
Q ss_pred CceecccCCceEEEEeeeecccccCC--EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEE
Q 000743 318 GRDDFVHKEKIVSSSMVISESFYAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAA 395 (1313)
Q Consensus 318 ~~~~~~~H~~~Vts~l~is~~~fsP~--~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLaf 395 (1313)
....+.+|...|.+ ..+.|. ++++|+-|-+|+.|+|. .- +. .++.-+.+.--.+| .|+++.|
T Consensus 159 hEi~l~hgtk~Vsa------l~~Dp~GaR~~sGs~Dy~v~~wDf~--gM-da-----s~~~fr~l~P~E~h--~i~sl~y 222 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSA------LAVDPSGARFVSGSLDYTVKFWDFQ--GM-DA-----SMRSFRQLQPCETH--QINSLQY 222 (641)
T ss_pred ceEeccCCceEEEE------eeecCCCceeeeccccceEEEEecc--cc-cc-----cchhhhccCccccc--ccceeee
Confidence 44578889999998 445554 69999999999994442 11 11 11111222222344 6899999
Q ss_pred eccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEE------------EEeccCCCEEEEEECCCCCCCCCCCEEEEEe
Q 000743 396 HRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLIT------------VMHHHVAPVRQIILSPPQTEHPWSDCFLSVG 463 (1313)
Q Consensus 396 sP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~------------t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS 463 (1313)
+| .| ..|+..+....++++|-.-.+... .-+||...+++.+|+|.+ ...|+|++
T Consensus 223 s~-----Tg----~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~-----k~~FlT~s 288 (641)
T KOG0772|consen 223 SV-----TG----DQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDN-----KEEFLTCS 288 (641)
T ss_pred cC-----CC----CeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCc-----ccceEEec
Confidence 85 34 566666667789999965332222 236899999999999996 47899999
Q ss_pred CCCeEEEEECCCCc-EEEEec-----CCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCc--E-EEEEeC
Q 000743 464 EDFSVALASLETLR-VERMFP-----GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA--R-ERVLRG 534 (1313)
Q Consensus 464 ~DgtV~LWDL~t~~-~l~~l~-----gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~--l-v~~L~G 534 (1313)
.|+++|+||+..-+ .++.+. +-.-+++.++|+|++++|++||.| |+|.+||.++.. . ..+-.+
T Consensus 289 ~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~D--------GSIQ~W~~~~~~v~p~~~vk~A 360 (641)
T KOG0772|consen 289 YDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLD--------GSIQIWDKGSRTVRPVMKVKDA 360 (641)
T ss_pred CCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccC--------CceeeeecCCcccccceEeeec
Confidence 99999999997543 333332 223367899999999999998877 999999976532 2 233357
Q ss_pred CCC--ceeEEeeecccccceeecccccCCcccccCcccccCCCcEEEEeCCcccc
Q 000743 535 TAS--HSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDER 587 (1313)
Q Consensus 535 H~a--~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~~~~~ 587 (1313)
|.. .++++.|+. + |+.+++-+. |+++|+|||++..+
T Consensus 361 H~~g~~Itsi~FS~-------d-----g~~LlSRg~-----D~tLKvWDLrq~kk 398 (641)
T KOG0772|consen 361 HLPGQDITSISFSY-------D-----GNYLLSRGF-----DDTLKVWDLRQFKK 398 (641)
T ss_pred cCCCCceeEEEecc-------c-----cchhhhccC-----CCceeeeecccccc
Confidence 887 776666643 2 345555444 99999999986543
No 104
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.57 E-value=1.8e-13 Score=167.12 Aligned_cols=206 Identities=13% Similarity=0.144 Sum_probs=157.0
Q ss_pred CCCceecccCCceEEEEeeeecccccCC-EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEE
Q 000743 316 GDGRDDFVHKEKIVSSSMVISESFYAPY-AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLA 394 (1313)
Q Consensus 316 ~~~~~~~~~H~~~Vts~l~is~~~fsP~-~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLa 394 (1313)
..+...|.||.+.|-. ..|+-+ .|++++.|.++++ |+ +....|+++| .|.+.|+|++
T Consensus 359 ekP~~ef~GHt~DILD------lSWSKn~fLLSSSMDKTVRL--Wh-------------~~~~~CL~~F-~HndfVTcVa 416 (712)
T KOG0283|consen 359 EKPFCEFKGHTADILD------LSWSKNNFLLSSSMDKTVRL--WH-------------PGRKECLKVF-SHNDFVTCVA 416 (712)
T ss_pred ccchhhhhccchhhee------cccccCCeeEeccccccEEe--ec-------------CCCcceeeEE-ecCCeeEEEE
Confidence 3578889999999988 444433 3999999999999 64 3455778777 4999999999
Q ss_pred EeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECC
Q 000743 395 AHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE 474 (1313)
Q Consensus 395 fsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~ 474 (1313)
|+| . ++++++|||.|+.||||++...+.+.=.. -..-|++++|.|+ |+..+.|+-+|.+++|+.+
T Consensus 417 FnP----v----DDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~Pd------Gk~avIGt~~G~C~fY~t~ 481 (712)
T KOG0283|consen 417 FNP----V----DDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPD------GKGAVIGTFNGYCRFYDTE 481 (712)
T ss_pred ecc----c----CCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccC------CceEEEEEeccEEEEEEcc
Confidence 998 3 45899999999999999998766554444 4478999999999 7999999999999999998
Q ss_pred CCcEEEEec---------CCCCCcEEEEEcCCCC-EEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCcee--EE
Q 000743 475 TLRVERMFP---------GHPNYPAKVVWDCPRG-YIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSM--FD 542 (1313)
Q Consensus 475 t~~~l~~l~---------gH~~~V~sVafsPdg~-~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi--~~ 542 (1313)
..+....+. .|. .|+.+.|.|... .+++.+.| ..|||+|.++..++..|+|+...-. .+
T Consensus 482 ~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnD--------SrIRI~d~~~~~lv~KfKG~~n~~SQ~~A 552 (712)
T KOG0283|consen 482 GLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSND--------SRIRIYDGRDKDLVHKFKGFRNTSSQISA 552 (712)
T ss_pred CCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCC--------CceEEEeccchhhhhhhcccccCCcceee
Confidence 877665442 122 799999998665 35554544 9999999999999999998775332 22
Q ss_pred eeecccccceeecccccCCcccccCcccccCCCcEEEEeCCc
Q 000743 543 HFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 584 (1313)
Q Consensus 543 ~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~~ 584 (1313)
.|.. +|. .+++.++|..|.+|++..
T Consensus 553 sfs~-------Dgk----------~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 553 SFSS-------DGK----------HIVSASEDSWVYIWKNDS 577 (712)
T ss_pred eEcc-------CCC----------EEEEeecCceEEEEeCCC
Confidence 2322 111 234445599999999853
No 105
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.55 E-value=5.9e-14 Score=174.82 Aligned_cols=178 Identities=22% Similarity=0.294 Sum_probs=145.3
Q ss_pred ccccCC--EEEEEE--cCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEE
Q 000743 338 SFYAPY--AIVYGF--FSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVS 413 (1313)
Q Consensus 338 ~~fsP~--~LvsGs--~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaS 413 (1313)
...+|+ ++++|+ .||.++||.-+.... ....++..-.+.+.+...|.+.|+|+.|+ +|| ++|++
T Consensus 19 Idv~pdg~~~aTgGq~~d~~~~iW~~~~vl~---~~~~~~~~l~k~l~~m~~h~~sv~CVR~S-----~dG----~~lAs 86 (942)
T KOG0973|consen 19 IDVHPDGVKFATGGQVLDGGIVIWSQDPVLD---EKEEKNENLPKHLCTMDDHDGSVNCVRFS-----PDG----SYLAS 86 (942)
T ss_pred EEecCCceeEecCCccccccceeeccccccc---hhhhhhcccchhheeeccccCceeEEEEC-----CCC----CeEee
Confidence 444555 588888 788999843332221 11223332235567788999999999998 577 99999
Q ss_pred EeCCCcEEEEECCC------------------CceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCC
Q 000743 414 GSMDCSIRIWDLGS------------------GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET 475 (1313)
Q Consensus 414 GS~DgtIrVWDl~t------------------g~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t 475 (1313)
||+|+.|.||+... .++...+.+|.+.|..++|+|+ +.+++|+|-|++|.+||.++
T Consensus 87 GSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~------~~~lvS~s~DnsViiwn~~t 160 (942)
T KOG0973|consen 87 GSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD------DSLLVSVSLDNSVIIWNAKT 160 (942)
T ss_pred ccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC------ccEEEEecccceEEEEcccc
Confidence 99999999999772 1367889999999999999998 79999999999999999999
Q ss_pred CcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeE
Q 000743 476 LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMF 541 (1313)
Q Consensus 476 ~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~ 541 (1313)
.+.+..+.+|.+.|..+.|+|-|+|+++-+.| ++|+||++.+-..++.++++-.++..
T Consensus 161 F~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdD--------rtikvwrt~dw~i~k~It~pf~~~~~ 218 (942)
T KOG0973|consen 161 FELLKVLRGHQSLVKGVSWDPIGKYFASQSDD--------RTLKVWRTSDWGIEKSITKPFEESPL 218 (942)
T ss_pred ceeeeeeecccccccceEECCccCeeeeecCC--------ceEEEEEcccceeeEeeccchhhCCC
Confidence 99999999999999999999999999986655 99999998777788888888775543
No 106
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.55 E-value=1.1e-13 Score=149.99 Aligned_cols=186 Identities=19% Similarity=0.245 Sum_probs=147.3
Q ss_pred eecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccc
Q 000743 320 DDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMV 399 (1313)
Q Consensus 320 ~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~ 399 (1313)
..+++|.+.|.+..+..+.. ++++|+.|+++.++..+.. .......++||.+.|-.++|+|.
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~----~lasgs~dktv~v~n~e~~-------------r~~~~~~~~gh~~svdql~w~~~- 75 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGT----KLASGSFDKTVSVWNLERD-------------RFRKELVYRGHTDSVDQLCWDPK- 75 (313)
T ss_pred HHhhhhhhcceEEEEcccCc----eeeecccCCceEEEEecch-------------hhhhhhcccCCCcchhhheeCCC-
Confidence 45678888898866666666 6999999999999433211 11223456799999999999972
Q ss_pred cCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCC---
Q 000743 400 GTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL--- 476 (1313)
Q Consensus 400 s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~--- 476 (1313)
+.+.+++++.|++||+||++++++.+......+.+ -+.|+|+ |.+++.++.|..|...|.++.
T Consensus 76 -------~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~------g~~~~~~~kdD~it~id~r~~~~~ 141 (313)
T KOG1407|consen 76 -------HPDLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPD------GEYIAVGNKDDRITFIDARTYKIV 141 (313)
T ss_pred -------CCcceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCC------CCEEEEecCcccEEEEEeccccee
Confidence 34789999999999999999999999887555544 4778888 677777777777777776543
Q ss_pred --------------------------------------cEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEE
Q 000743 477 --------------------------------------RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVL 518 (1313)
Q Consensus 477 --------------------------------------~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtI 518 (1313)
++++.+..|+....||.|+|+|+|+++|+.| ..+
T Consensus 142 ~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsAD--------Alv 213 (313)
T KOG1407|consen 142 NEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSAD--------ALV 213 (313)
T ss_pred ehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeecccc--------cee
Confidence 4556777899888999999999999997776 899
Q ss_pred EEEECCCCcEEEEEeCCCCceeEEeee
Q 000743 519 FIWDVKTGARERVLRGTASHSMFDHFC 545 (1313)
Q Consensus 519 rVWDlrTG~lv~~L~GH~a~Vi~~~~c 545 (1313)
.+||+..--++|.+..|.=+|-.+.|.
T Consensus 214 SLWD~~ELiC~R~isRldwpVRTlSFS 240 (313)
T KOG1407|consen 214 SLWDVDELICERCISRLDWPVRTLSFS 240 (313)
T ss_pred eccChhHhhhheeeccccCceEEEEec
Confidence 999999988999999999888776563
No 107
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.55 E-value=2.3e-13 Score=156.69 Aligned_cols=167 Identities=19% Similarity=0.226 Sum_probs=140.2
Q ss_pred ccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCC
Q 000743 323 VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTA 402 (1313)
Q Consensus 323 ~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~p 402 (1313)
..|...+.++++.++..| +++|..|..|.| | +..+.+.++.+.||.+.|.+++|-
T Consensus 199 ~~h~keil~~avS~Dgky----latgg~d~~v~I--w-------------~~~t~ehv~~~~ghr~~V~~L~fr------ 253 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKY----LATGGRDRHVQI--W-------------DCDTLEHVKVFKGHRGAVSSLAFR------ 253 (479)
T ss_pred ccccceeEEEEEcCCCcE----EEecCCCceEEE--e-------------cCcccchhhcccccccceeeeeee------
Confidence 489999999888888884 999999999989 4 346678889999999999999994
Q ss_pred CCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Q 000743 403 KGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMF 482 (1313)
Q Consensus 403 DGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l 482 (1313)
.....|+|+|.|++|++|++.....+.++.+|.+.|.++....- +.++..|+.|+++++|++. -+....+
T Consensus 254 ---~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~r------eR~vtVGgrDrT~rlwKi~-eesqlif 323 (479)
T KOG0299|consen 254 ---KGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSR------ERCVTVGGRDRTVRLWKIP-EESQLIF 323 (479)
T ss_pred ---cCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcc------cceEEeccccceeEEEecc-ccceeee
Confidence 23578999999999999999999999999999999999987766 4677777799999999994 3445578
Q ss_pred cCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEe
Q 000743 483 PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 533 (1313)
Q Consensus 483 ~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~ 533 (1313)
.+|.+.+-|++|-.+.. +++|+.| |.|.+|++-+.+++.+..
T Consensus 324 rg~~~sidcv~~In~~H-fvsGSdn--------G~IaLWs~~KKkplf~~~ 365 (479)
T KOG0299|consen 324 RGGEGSIDCVAFINDEH-FVSGSDN--------GSIALWSLLKKKPLFTSR 365 (479)
T ss_pred eCCCCCeeeEEEecccc-eeeccCC--------ceEEEeeecccCceeEee
Confidence 89988999999987654 5565554 999999999888776654
No 108
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.55 E-value=1.5e-13 Score=159.20 Aligned_cols=182 Identities=18% Similarity=0.210 Sum_probs=145.8
Q ss_pred ceecccCCceEEEEeeeecccccCC---EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEE
Q 000743 319 RDDFVHKEKIVSSSMVISESFYAPY---AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAA 395 (1313)
Q Consensus 319 ~~~~~~H~~~Vts~l~is~~~fsP~---~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLaf 395 (1313)
...+..|..+|.. ..|+|. .+++|+.|+.+++ |++ .+......+.||++.|.|.+|
T Consensus 103 LR~~~ah~apv~~------~~f~~~d~t~l~s~sDd~v~k~--~d~-------------s~a~v~~~l~~htDYVR~g~~ 161 (487)
T KOG0310|consen 103 LRQLYAHQAPVHV------TKFSPQDNTMLVSGSDDKVVKY--WDL-------------STAYVQAELSGHTDYVRCGDI 161 (487)
T ss_pred HHHHhhccCceeE------EEecccCCeEEEecCCCceEEE--EEc-------------CCcEEEEEecCCcceeEeecc
Confidence 4567889999988 566665 3777877788877 653 333445589999999999999
Q ss_pred eccccCCCCCccCcEEEEEeCCCcEEEEECCCC-ceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECC
Q 000743 396 HRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG-NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE 474 (1313)
Q Consensus 396 sP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg-~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~ 474 (1313)
+| . ++..++|||.||+||+||+++. ..+..+. |..+|.++.+-|. |..|+|++. +.|++||+-
T Consensus 162 ~~----~----~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lps------gs~iasAgG-n~vkVWDl~ 225 (487)
T KOG0310|consen 162 SP----A----NDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPS------GSLIASAGG-NSVKVWDLT 225 (487)
T ss_pred cc----C----CCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCC------CCEEEEcCC-CeEEEEEec
Confidence 97 2 3479999999999999999977 6777887 9999999999998 788998875 689999999
Q ss_pred CCc-EEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEeeec
Q 000743 475 TLR-VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCK 546 (1313)
Q Consensus 475 t~~-~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~ 546 (1313)
+|. .+..+..|...|+|+++..++..|++|+-| +.|++||+.+-+.+..+. -.++|++....+
T Consensus 226 ~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD--------~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~ 289 (487)
T KOG0310|consen 226 TGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLD--------RHVKVFDTTNYKVVHSWK-YPGPVLSIAVSP 289 (487)
T ss_pred CCceehhhhhcccceEEEEEeecCCceEeecccc--------cceEEEEccceEEEEeee-cccceeeEEecC
Confidence 665 445555598899999999999999998777 999999987777666654 345777665544
No 109
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.54 E-value=4.4e-14 Score=158.42 Aligned_cols=223 Identities=16% Similarity=0.132 Sum_probs=173.1
Q ss_pred CceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeec-----------------------cccCCCCCCcccc
Q 000743 318 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDL-----------------------FERHNSPGASLKV 374 (1313)
Q Consensus 318 ~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdl-----------------------l~~~~~~~~~wdv 374 (1313)
++..|..|.+.|..+.+-. ..+++.+.|.+|+.|..+. +.........||.
T Consensus 101 ~~~~f~AH~G~V~Gi~v~~------~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~ 174 (433)
T KOG0268|consen 101 CIRTFKAHEGLVRGICVTQ------TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDE 174 (433)
T ss_pred hhheeecccCceeeEEecc------cceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeeccc
Confidence 5778999999999844333 3588889999999965210 0000122346888
Q ss_pred CCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCC
Q 000743 375 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHP 454 (1313)
Q Consensus 375 ~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~ 454 (1313)
....+++.+.--.+.|.++.|+|. ....|++|+.|++|.++|+++++++++.. -.-.-+.|+|+|+
T Consensus 175 ~R~~Pv~smswG~Dti~svkfNpv--------ETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPe----- 240 (433)
T KOG0268|consen 175 QRDNPVSSMSWGADSISSVKFNPV--------ETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPE----- 240 (433)
T ss_pred ccCCccceeecCCCceeEEecCCC--------cchheeeeccCCceEEEecccCCccceee-eeccccceecCcc-----
Confidence 777888999888889999999972 34789999999999999999999988876 4556789999996
Q ss_pred CCCEEEEEeCCCeEEEEECCCC-cEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEe
Q 000743 455 WSDCFLSVGEDFSVALASLETL-RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 533 (1313)
Q Consensus 455 ~g~~LaSgS~DgtV~LWDL~t~-~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~ 533 (1313)
+..|++++.|..+..+|++.. +++....+|.+.|..|.|+|.|+-+++|+.| .+|+||..+.++.-.++.
T Consensus 241 -afnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyD--------ksIRIf~~~~~~SRdiYh 311 (433)
T KOG0268|consen 241 -AFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYD--------KSIRIFPVNHGHSRDIYH 311 (433)
T ss_pred -ccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcccccc--------ceEEEeecCCCcchhhhh
Confidence 688999999999999999865 5778889999999999999999999997766 999999999877654443
Q ss_pred -CCCCceeEEeeecccccceeecccccCCcccccCcccccCCCcEEEEeCCccc
Q 000743 534 -GTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDE 586 (1313)
Q Consensus 534 -GH~a~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~~~~ 586 (1313)
--...|.++.|+. .+..+++||. |++||+|.-+..+
T Consensus 312 tkRMq~V~~Vk~S~-Dskyi~SGSd----------------d~nvRlWka~Ase 348 (433)
T KOG0268|consen 312 TKRMQHVFCVKYSM-DSKYIISGSD----------------DGNVRLWKAKASE 348 (433)
T ss_pred HhhhheeeEEEEec-cccEEEecCC----------------Ccceeeeecchhh
Confidence 2234566665643 2334777775 8999999976433
No 110
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.54 E-value=2.4e-13 Score=149.08 Aligned_cols=235 Identities=18% Similarity=0.215 Sum_probs=157.3
Q ss_pred cccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceE---EEEEecCCccEEEEEEecc
Q 000743 322 FVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVS---RQYFLGHTGAVLCLAAHRM 398 (1313)
Q Consensus 322 ~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~---~~~L~GH~~~V~sLafsP~ 398 (1313)
..-|++.|+++-.-.... ..+++|+.||.|.+ ||+....+..... -+...+| ...-.+|+..|.++.|-|
T Consensus 39 ~r~HgGsvNsL~id~teg---rymlSGgadgsi~v--~Dl~n~t~~e~s~-li~k~~c~v~~~h~~~Hky~iss~~WyP- 111 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEG---RYMLSGGADGSIAV--FDLQNATDYEASG-LIAKHKCIVAKQHENGHKYAISSAIWYP- 111 (397)
T ss_pred eccCCCccceeeeccccc---eEEeecCCCccEEE--EEeccccchhhcc-ceeheeeeccccCCccceeeeeeeEEee-
Confidence 356888888843222111 14899999999999 6543221100000 0001112 122358999999999998
Q ss_pred ccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCC-EEEEEeCCCeEEEEECCCCc
Q 000743 399 VGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSD-CFLSVGEDFSVALASLETLR 477 (1313)
Q Consensus 399 ~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~-~LaSgS~DgtV~LWDL~t~~ 477 (1313)
-| ...+.|+|.|++++|||..|-+....|+ -.+.|++-+++|-.. .+ ++++|..|-.|++-|+..|.
T Consensus 112 ---~D----tGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~----sHcLiA~gtr~~~VrLCDi~SGs 179 (397)
T KOG4283|consen 112 ---ID----TGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAM----SHCLIAAGTRDVQVRLCDIASGS 179 (397)
T ss_pred ---ec----CceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhh----cceEEEEecCCCcEEEEeccCCc
Confidence 22 2589999999999999999999888887 678899999998643 24 56667778899999999999
Q ss_pred EEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCC-cEEEEEeCCCCcee-EEeeecccccceeec
Q 000743 478 VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG-ARERVLRGTASHSM-FDHFCKGISMNSISG 555 (1313)
Q Consensus 478 ~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG-~lv~~L~GH~a~Vi-~~~~c~~~s~~ivSG 555 (1313)
+-+++.||.+.|.+|.|+|...|++.. |+.| |.|++||+|.. -+.+++.-|...-. .+..-.+ ....+-|
T Consensus 180 ~sH~LsGHr~~vlaV~Wsp~~e~vLat-----gsaD--g~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~a-h~gkvng 251 (397)
T KOG4283|consen 180 FSHTLSGHRDGVLAVEWSPSSEWVLAT-----GSAD--GAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTA-HYGKVNG 251 (397)
T ss_pred ceeeeccccCceEEEEeccCceeEEEe-----cCCC--ceEEEEEeecccceeEEeecccCccCcccccccc-ccceeee
Confidence 999999999999999999998876531 3444 99999999875 57788877773110 0000000 0001111
Q ss_pred ccccCCcccccCcccccCCCcEEEEeCCccc
Q 000743 556 SVLNGNTSVSSLLLPIHEDGTFRQSQIQNDE 586 (1313)
Q Consensus 556 S~l~g~~l~S~~lvs~s~DgtIr~Wdl~~~~ 586 (1313)
.. | ++....+.++..|.++|.|+..+.+
T Consensus 252 la--~-tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 252 LA--W-TSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred ee--e-cccchhhhhccCccceEEeecccCc
Confidence 11 1 1223345667779999999976433
No 111
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.54 E-value=4e-13 Score=152.09 Aligned_cols=176 Identities=16% Similarity=0.185 Sum_probs=142.6
Q ss_pred ceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEecc
Q 000743 319 RDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRM 398 (1313)
Q Consensus 319 ~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~ 398 (1313)
...+.+|.+.|-.+ ....|+...|++|++|.+|.| |+.-..+-. ..--+++..|.||..+|.-++|||.
T Consensus 74 ~P~v~GHt~~vLDi---~w~PfnD~vIASgSeD~~v~v--W~IPe~~l~------~~ltepvv~L~gH~rrVg~V~wHPt 142 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDI---DWCPFNDCVIASGSEDTKVMV--WQIPENGLT------RDLTEPVVELYGHQRRVGLVQWHPT 142 (472)
T ss_pred CCCccCcccccccc---ccCccCCceeecCCCCceEEE--EECCCcccc------cCcccceEEEeecceeEEEEeeccc
Confidence 45678999999883 333333447999999999999 754333211 0112678999999999999999983
Q ss_pred ccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcE
Q 000743 399 VGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRV 478 (1313)
Q Consensus 399 ~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~ 478 (1313)
..+.|+|+|.|.+|.+||+.+|+.+-++. |.+-|+++.|+.+ |.++++++.|+.|++||.++++.
T Consensus 143 --------A~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~d------Gs~l~TtckDKkvRv~dpr~~~~ 207 (472)
T KOG0303|consen 143 --------APNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRD------GSLLCTTCKDKKVRVIDPRRGTV 207 (472)
T ss_pred --------chhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccC------CceeeeecccceeEEEcCCCCcE
Confidence 35799999999999999999999988888 9999999999999 89999999999999999999999
Q ss_pred EEEecCCCC-CcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCC
Q 000743 479 ERMFPGHPN-YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 525 (1313)
Q Consensus 479 l~~l~gH~~-~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrT 525 (1313)
+..-.+|.+ ....+.|-.++.++.|| .. ..++ ..+-+||..+
T Consensus 208 v~e~~~heG~k~~Raifl~~g~i~tTG-fs--r~se--Rq~aLwdp~n 250 (472)
T KOG0303|consen 208 VSEGVAHEGAKPARAIFLASGKIFTTG-FS--RMSE--RQIALWDPNN 250 (472)
T ss_pred eeecccccCCCcceeEEeccCceeeec-cc--cccc--cceeccCccc
Confidence 998888976 35678899999955544 33 4555 8999999765
No 112
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.53 E-value=1.3e-13 Score=158.81 Aligned_cols=217 Identities=18% Similarity=0.229 Sum_probs=167.4
Q ss_pred ceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCcccc----C-CceEEEEE-ecCCccEEE
Q 000743 319 RDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV----N-SHVSRQYF-LGHTGAVLC 392 (1313)
Q Consensus 319 ~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv----~-tg~~~~~L-~GH~~~V~s 392 (1313)
......|.-+++|+...++.. +.+.++.||+|.- |+........ -.|.. + .+.+.+.- ++|...+.+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~----~~fsask~g~i~k--w~v~tgk~~~-~i~~~~ev~k~~~~~~k~~r~~h~keil~ 207 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDK----RVFSASKDGTILK--WDVLTGKKDR-YIIERDEVLKSHGNPLKESRKGHVKEILT 207 (479)
T ss_pred ceeeccccCcceEEEeecccc----ceeecCCCcceee--eehhcCcccc-cccccchhhhhccCCCCcccccccceeEE
Confidence 456778999999965555555 5889999996655 8754442110 01111 0 11112212 499999999
Q ss_pred EEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEE
Q 000743 393 LAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALAS 472 (1313)
Q Consensus 393 LafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWD 472 (1313)
++.+ +|| .+|++|+.|..|.|||.++.+.++.|.+|.+.|.+++|-.. -+.++|+|.|++|++|+
T Consensus 208 ~avS-----~Dg----kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~g------t~~lys~s~Drsvkvw~ 272 (479)
T KOG0299|consen 208 LAVS-----SDG----KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKG------TSELYSASADRSVKVWS 272 (479)
T ss_pred EEEc-----CCC----cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecC------ccceeeeecCCceEEEe
Confidence 9998 577 99999999999999999999999999999999999999765 36899999999999999
Q ss_pred CCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEeeecccccce
Q 000743 473 LETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNS 552 (1313)
Q Consensus 473 L~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~~~s~~i 552 (1313)
++....+.++-||.+.|..+....-++.+-+|+.| .++++|++.. +.--.+.||.+.+-+++|.+ +...
T Consensus 273 ~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrD--------rT~rlwKi~e-esqlifrg~~~sidcv~~In--~~Hf 341 (479)
T KOG0299|consen 273 IDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRD--------RTVRLWKIPE-ESQLIFRGGEGSIDCVAFIN--DEHF 341 (479)
T ss_pred hhHhHHHHHHhCCccceeeechhcccceEEecccc--------ceeEEEeccc-cceeeeeCCCCCeeeEEEec--ccce
Confidence 99999999999999999999888888888777777 9999999943 33456779987776666644 2345
Q ss_pred eecccccCCcccccCcccccCCCcEEEEeCCc
Q 000743 553 ISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 584 (1313)
Q Consensus 553 vSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~~ 584 (1313)
++|+. ||+|-+|++.+
T Consensus 342 vsGSd----------------nG~IaLWs~~K 357 (479)
T KOG0299|consen 342 VSGSD----------------NGSIALWSLLK 357 (479)
T ss_pred eeccC----------------CceEEEeeecc
Confidence 66664 89999999853
No 113
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.51 E-value=8.7e-14 Score=153.13 Aligned_cols=177 Identities=17% Similarity=0.285 Sum_probs=146.0
Q ss_pred CCceecccCCceEEEEeeeecccccCC--EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEE
Q 000743 317 DGRDDFVHKEKIVSSSMVISESFYAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLA 394 (1313)
Q Consensus 317 ~~~~~~~~H~~~Vts~l~is~~~fsP~--~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLa 394 (1313)
..+.+|..|.+.|++ ..|+|. .|++|+.|++|++++|. ... -.+..+.|. ....|.++.
T Consensus 163 PvIRTlYDH~devn~------l~FHPre~ILiS~srD~tvKlFDfs--K~s----------aKrA~K~~q-d~~~vrsiS 223 (430)
T KOG0640|consen 163 PVIRTLYDHVDEVND------LDFHPRETILISGSRDNTVKLFDFS--KTS----------AKRAFKVFQ-DTEPVRSIS 223 (430)
T ss_pred ceEeehhhccCcccc------eeecchhheEEeccCCCeEEEEecc--cHH----------HHHHHHHhh-ccceeeeEe
Confidence 346789999999999 677776 59999999999994442 221 012222332 245799999
Q ss_pred EeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEE---eccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEE
Q 000743 395 AHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVM---HHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALA 471 (1313)
Q Consensus 395 fsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~---~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LW 471 (1313)
||| .| ++|+.|...-++|+||+++.+|...- .+|++.|++|.+++. +++.+++|.||.|+||
T Consensus 224 fHP-----sG----efllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t------~~lYvTaSkDG~Iklw 288 (430)
T KOG0640|consen 224 FHP-----SG----EFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSST------GSLYVTASKDGAIKLW 288 (430)
T ss_pred ecC-----CC----ceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCC------ccEEEEeccCCcEEee
Confidence 996 45 89999999999999999999886654 469999999999998 7999999999999999
Q ss_pred ECCCCcEEEEec-CCCC-CcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCC
Q 000743 472 SLETLRVERMFP-GHPN-YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGT 535 (1313)
Q Consensus 472 DL~t~~~l~~l~-gH~~-~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH 535 (1313)
|--.++|+.++. .|.+ .|.+..|..+++|+++.+.| .++++|++.||+.+.++.|.
T Consensus 289 DGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~D--------S~vkLWEi~t~R~l~~YtGA 346 (430)
T KOG0640|consen 289 DGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKD--------STVKLWEISTGRMLKEYTGA 346 (430)
T ss_pred ccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCc--------ceeeeeeecCCceEEEEecC
Confidence 999999998884 5644 68899999999999998877 99999999999999999875
No 114
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.51 E-value=9.5e-13 Score=151.18 Aligned_cols=198 Identities=14% Similarity=0.134 Sum_probs=147.0
Q ss_pred Ceeeeeecccccc-ccccccccccCCC--CCCCceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccC
Q 000743 289 GSCTGKSDLTFCQ-DTVPRSEHVDSRQ--AGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERH 365 (1313)
Q Consensus 289 Gi~Iwk~~~ss~~-~~i~~l~~~~~~~--~~~~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~ 365 (1313)
.+-||++.+-... +.+.+........ .+.....-.+|...|-+ +..+....+.|++|+.|.+|++ |
T Consensus 203 ~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~---Ls~n~~~~nVLaSgsaD~TV~l--W------ 271 (463)
T KOG0270|consen 203 EIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLA---LSWNRNFRNVLASGSADKTVKL--W------ 271 (463)
T ss_pred eeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHH---HHhccccceeEEecCCCceEEE--E------
Confidence 4667888776543 2222222111111 11123345578888776 3333444446999999999999 5
Q ss_pred CCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEE
Q 000743 366 NSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQII 445 (1313)
Q Consensus 366 ~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~ 445 (1313)
|+.+++|..++..|.+.|.++.|+| +...+|++||.|++|++.|.+........-...+.|..++
T Consensus 272 -------D~~~g~p~~s~~~~~k~Vq~l~wh~--------~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~ 336 (463)
T KOG0270|consen 272 -------DVDTGKPKSSITHHGKKVQTLEWHP--------YEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVA 336 (463)
T ss_pred -------EcCCCCcceehhhcCCceeEEEecC--------CCceEEEeccccceEEeeeccCccccCceEEeccceEEEE
Confidence 5578899999999999999999997 2458999999999999999995443333223567899999
Q ss_pred ECCCCCCCCCCCEEEEEeCCCeEEEEECCCC-cEEEEecCCCCCcEEEEEcCCCCE-EEEEecCCCCCCCCCCEEEEEEC
Q 000743 446 LSPPQTEHPWSDCFLSVGEDFSVALASLETL-RVERMFPGHPNYPAKVVWDCPRGY-IACLCRDHSRTSDAVDVLFIWDV 523 (1313)
Q Consensus 446 fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~-~~l~~l~gH~~~V~sVafsPdg~~-Latgs~DlsGssD~DgtIrVWDl 523 (1313)
|+|.. -+.|+++..||+|+-+|+|.. +++.++..|.++|.++++++.-.. ++|++.| ++|++|++
T Consensus 337 w~~~s-----e~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d--------~~Vklw~~ 403 (463)
T KOG0270|consen 337 WDPHS-----ENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTD--------KVVKLWKF 403 (463)
T ss_pred ecCCC-----ceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecccc--------ceEEEEee
Confidence 99985 368889999999999999976 899999999999999999997765 5554444 99999998
Q ss_pred CC
Q 000743 524 KT 525 (1313)
Q Consensus 524 rT 525 (1313)
..
T Consensus 404 ~~ 405 (463)
T KOG0270|consen 404 DV 405 (463)
T ss_pred cC
Confidence 64
No 115
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.51 E-value=2.2e-13 Score=161.30 Aligned_cols=220 Identities=17% Similarity=0.219 Sum_probs=147.1
Q ss_pred ceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEE--EecCCccEEEEEEe
Q 000743 319 RDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQY--FLGHTGAVLCLAAH 396 (1313)
Q Consensus 319 ~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~--L~GH~~~V~sLafs 396 (1313)
...+..|...|....+++... .|+++++|.+++. || +++.++... +.||++.|.+++|.
T Consensus 93 lk~~~aH~nAifDl~wapge~----~lVsasGDsT~r~--Wd-------------vk~s~l~G~~~~~GH~~SvkS~cf~ 153 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGES----LLVSASGDSTIRP--WD-------------VKTSRLVGGRLNLGHTGSVKSECFM 153 (720)
T ss_pred hcccccccceeEeeccCCCce----eEEEccCCceeee--ee-------------eccceeecceeecccccccchhhhc
Confidence 456778999999866666444 6999999999999 64 344455554 89999999999999
Q ss_pred ccccCCCCCccCcEEEEEeCCCcEEEEECCCCc---------------------------eEEEEeccCCCEEE---EEE
Q 000743 397 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN---------------------------LITVMHHHVAPVRQ---IIL 446 (1313)
Q Consensus 397 P~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~---------------------------~l~t~~gH~~~V~s---V~f 446 (1313)
| .+...|++|+.||.|.|||++-.. .+++...|...|.+ +.+
T Consensus 154 ~--------~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~ 225 (720)
T KOG0321|consen 154 P--------TNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVL 225 (720)
T ss_pred c--------CCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEE
Confidence 6 245899999999999999987221 12233345444444 444
Q ss_pred CCCCCCCCCCCEEEEEeC-CCeEEEEECCCCcEEEE--------ecCC---CCCcEEEEEcCCCCEEEEEecC-------
Q 000743 447 SPPQTEHPWSDCFLSVGE-DFSVALASLETLRVERM--------FPGH---PNYPAKVVWDCPRGYIACLCRD------- 507 (1313)
Q Consensus 447 sPd~~~~~~g~~LaSgS~-DgtV~LWDL~t~~~l~~--------l~gH---~~~V~sVafsPdg~~Latgs~D------- 507 (1313)
..| ...|+|+|. |+.|++||+++..+... +..| .-.+.++..+..|.||++.|.|
T Consensus 226 fkD------e~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~yn 299 (720)
T KOG0321|consen 226 FKD------ESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYN 299 (720)
T ss_pred Eec------cceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEe
Confidence 444 378998888 99999999997654332 2223 1235677777788888888877
Q ss_pred ---------------------------------CCCCCCCCCEEEEEECCCCc-EEEEEeCCCCceeEEeeeccccccee
Q 000743 508 ---------------------------------HSRTSDAVDVLFIWDVKTGA-RERVLRGTASHSMFDHFCKGISMNSI 553 (1313)
Q Consensus 508 ---------------------------------lsGssD~DgtIrVWDlrTG~-lv~~L~GH~a~Vi~~~~c~~~s~~iv 553 (1313)
++|++| ...++|.+.+.+ ....+.||+-+|..++||+.
T Consensus 300 m~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd--~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS------ 371 (720)
T KOG0321|consen 300 MRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSD--EQAYIWVVSSPEAPPALLLGHTREVTTVRWLPS------ 371 (720)
T ss_pred ccccCcCchhhccCcccceeeeeeecCCCCceEeccCCC--cceeeeeecCccCChhhhhCcceEEEEEeeccc------
Confidence 223333 444444444322 22345567766666666542
Q ss_pred ecccccCCcccccCcccccCCCcEEEEeCCcccccc
Q 000743 554 SGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERGV 589 (1313)
Q Consensus 554 SGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~~~~~~~ 589 (1313)
.....+.++.|-++++|++.+...+.
T Consensus 372 ----------~~t~v~TcSdD~~~kiW~l~~~l~e~ 397 (720)
T KOG0321|consen 372 ----------ATTPVATCSDDFRVKIWRLSNGLEEI 397 (720)
T ss_pred ----------cCCCceeeccCcceEEEeccCchhhc
Confidence 23345566779999999997665544
No 116
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=2.4e-13 Score=150.34 Aligned_cols=168 Identities=20% Similarity=0.249 Sum_probs=126.0
Q ss_pred EEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCc-----eEEEEeccCCCEEEEEECCCCCC--
Q 000743 380 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN-----LITVMHHHVAPVRQIILSPPQTE-- 452 (1313)
Q Consensus 380 ~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~-----~l~t~~gH~~~V~sV~fsPd~~~-- 452 (1313)
...|+||.+.|++++|+ .|| ..|+|++.|++||+||++..+ +++. ...-+.-+.|.|.||-..
T Consensus 79 ~~~LKgH~~~vt~~~Fs-----SdG----K~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~FapDc~s~v 148 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFS-----SDG----KKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVFAPDCKSVV 148 (420)
T ss_pred hhhhhccCCceeeeEEc-----CCC----ceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEECCCcceEE
Confidence 45789999999999998 567 999999999999999998532 1111 001122344555554110
Q ss_pred -----------------------------------------------CCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC
Q 000743 453 -----------------------------------------------HPWSDCFLSVGEDFSVALASLETLRVERMFPGH 485 (1313)
Q Consensus 453 -----------------------------------------------~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH 485 (1313)
.-.+.+|+|++.|.+|.|||++ |+.+..+...
T Consensus 149 v~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtn 227 (420)
T KOG2096|consen 149 VSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTN 227 (420)
T ss_pred EEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccc
Confidence 0115799999999999999998 9999888776
Q ss_pred CCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEEC---CCC-----cEEEEEeCCCCceeEEeeecccccceeeccc
Q 000743 486 PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV---KTG-----ARERVLRGTASHSMFDHFCKGISMNSISGSV 557 (1313)
Q Consensus 486 ~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDl---rTG-----~lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS~ 557 (1313)
...-+..+.+|+|+|+++++.. --|+||++ +.| ..+..+.||++.|....|.+.
T Consensus 228 q~~n~~aavSP~GRFia~~gFT--------pDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~---------- 289 (420)
T KOG2096|consen 228 QSSNYDAAVSPDGRFIAVSGFT--------PDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNS---------- 289 (420)
T ss_pred cccccceeeCCCCcEEEEecCC--------CCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCC----------
Confidence 6667789999999999998765 56999986 333 245678899999988777541
Q ss_pred ccCCcccccCcccccCCCcEEEEeCC
Q 000743 558 LNGNTSVSSLLLPIHEDGTFRQSQIQ 583 (1313)
Q Consensus 558 l~g~~l~S~~lvs~s~DgtIr~Wdl~ 583 (1313)
|..++++|+||++|+||+.
T Consensus 290 -------S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 290 -------STRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred -------cceeEEEecCCcEEEeecc
Confidence 2345677889999999986
No 117
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.50 E-value=1.5e-13 Score=156.36 Aligned_cols=203 Identities=17% Similarity=0.133 Sum_probs=157.2
Q ss_pred CceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEec
Q 000743 318 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 397 (1313)
Q Consensus 318 ~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP 397 (1313)
...++.+-.+.+++..|-++.. .++.++.|+..++ | ++...+...+|.||++.|+++.|..
T Consensus 211 ~~~tLaGs~g~it~~d~d~~~~----~~iAas~d~~~r~--W-------------nvd~~r~~~TLsGHtdkVt~ak~~~ 271 (459)
T KOG0288|consen 211 LISTLAGSLGNITSIDFDSDNK----HVIAASNDKNLRL--W-------------NVDSLRLRHTLSGHTDKVTAAKFKL 271 (459)
T ss_pred hhhhhhccCCCcceeeecCCCc----eEEeecCCCceee--e-------------eccchhhhhhhcccccceeeehhhc
Confidence 4567778888888844433333 4888899999999 5 4456678899999999999999963
Q ss_pred cccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCc
Q 000743 398 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR 477 (1313)
Q Consensus 398 ~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~ 477 (1313)
....++||+.|.+|+.||+....|..+.. -.+.++.|...+ ..++|+-.|++|++||.++..
T Consensus 272 ---------~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~~--------~~~~SgH~DkkvRfwD~Rs~~ 333 (459)
T KOG0288|consen 272 ---------SHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCSI--------SDVISGHFDKKVRFWDIRSAD 333 (459)
T ss_pred ---------cccceeeccccchhhhhhhhhhheecccc-ccccccceEecc--------eeeeecccccceEEEeccCCc
Confidence 12349999999999999999998888765 455677777653 579999999999999999999
Q ss_pred EEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCC----ceeEEeeeccccccee
Q 000743 478 VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTAS----HSMFDHFCKGISMNSI 553 (1313)
Q Consensus 478 ~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a----~Vi~~~~c~~~s~~iv 553 (1313)
+.+..+.+. .|+++..++++..|.+.+.| .++.+.|+++.+...++..-.- ...-+.|++
T Consensus 334 ~~~sv~~gg-~vtSl~ls~~g~~lLsssRD--------dtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSp------- 397 (459)
T KOG0288|consen 334 KTRSVPLGG-RVTSLDLSMDGLELLSSSRD--------DTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSP------- 397 (459)
T ss_pred eeeEeecCc-ceeeEeeccCCeEEeeecCC--------CceeeeecccccEEEEeeccccccccccceeEECC-------
Confidence 999999885 99999999999999988777 8999999999888777764321 122333433
Q ss_pred ecccccCCcccccCcccccCCCcEEEEeCC
Q 000743 554 SGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 583 (1313)
Q Consensus 554 SGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~ 583 (1313)
+| .++++++ .||.|++|++.
T Consensus 398 d~-----~YvaAGS-----~dgsv~iW~v~ 417 (459)
T KOG0288|consen 398 DG-----SYVAAGS-----ADGSVYIWSVF 417 (459)
T ss_pred CC-----ceeeecc-----CCCcEEEEEcc
Confidence 12 2344443 39999999975
No 118
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=2.7e-12 Score=142.02 Aligned_cols=206 Identities=14% Similarity=0.199 Sum_probs=152.5
Q ss_pred ccCCceEEEEeeeecccccCC--EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEecccc
Q 000743 323 VHKEKIVSSSMVISESFYAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVG 400 (1313)
Q Consensus 323 ~~H~~~Vts~l~is~~~fsP~--~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s 400 (1313)
.+|.+-|++ +.|.++ ++++++.|++++| |++.. +..+..+....+.|.+.|..+.|.|
T Consensus 10 s~h~Dlihd------Vs~D~~GRRmAtCSsDq~vkI--~d~~~---------~s~~W~~Ts~Wrah~~Si~rV~WAh--- 69 (361)
T KOG2445|consen 10 SGHKDLIHD------VSFDFYGRRMATCSSDQTVKI--WDSTS---------DSGTWSCTSSWRAHDGSIWRVVWAH--- 69 (361)
T ss_pred cCCcceeee------eeecccCceeeeccCCCcEEE--EeccC---------CCCceEEeeeEEecCCcEEEEEecC---
Confidence 467788888 555554 6999999999999 55311 1233456778899999999999954
Q ss_pred CCCCCccCcEEEEEeCCCcEEEEECC---------CCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEE
Q 000743 401 TAKGWSFNEVLVSGSMDCSIRIWDLG---------SGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALA 471 (1313)
Q Consensus 401 ~pDGr~~~~~LaSGS~DgtIrVWDl~---------tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LW 471 (1313)
| .+++.++++|.|++++||.=. ......++..-.+.|+.|.|.|.+. |-.+++++.||++|||
T Consensus 70 -P---EfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hl----GLklA~~~aDG~lRIY 141 (361)
T KOG2445|consen 70 -P---EFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHL----GLKLAAASADGILRIY 141 (361)
T ss_pred -c---cccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhc----ceEEEEeccCcEEEEE
Confidence 2 145999999999999999752 1124556777788999999999854 6789999999999999
Q ss_pred ECCCC-------------------------------------------------------------------cEEEEecC
Q 000743 472 SLETL-------------------------------------------------------------------RVERMFPG 484 (1313)
Q Consensus 472 DL~t~-------------------------------------------------------------------~~l~~l~g 484 (1313)
+.-.. ..+.++.+
T Consensus 142 EA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d 221 (361)
T KOG2445|consen 142 EAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD 221 (361)
T ss_pred ecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC
Confidence 75321 01124558
Q ss_pred CCCCcEEEEEcCCC----CEEEEEecCCCCCCCCCCEEEEEECCC--------------------CcEEEEEeCCCCcee
Q 000743 485 HPNYPAKVVWDCPR----GYIACLCRDHSRTSDAVDVLFIWDVKT--------------------GARERVLRGTASHSM 540 (1313)
Q Consensus 485 H~~~V~sVafsPdg----~~Latgs~DlsGssD~DgtIrVWDlrT--------------------G~lv~~L~GH~a~Vi 540 (1313)
|+.+|+.++|.|+- ..|+++|.| | |+||.++. -+.+..+.+|+.+|.
T Consensus 222 ~~dpI~di~wAPn~Gr~y~~lAvA~kD--------g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VW 292 (361)
T KOG2445|consen 222 HTDPIRDISWAPNIGRSYHLLAVATKD--------G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVW 292 (361)
T ss_pred CCCcceeeeeccccCCceeeEEEeecC--------c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceE
Confidence 88999999999964 378888877 8 99999873 134566789999997
Q ss_pred EEeeecccccceeecccccCCcccccCcccccCCCcEEEEeC
Q 000743 541 FDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 582 (1313)
Q Consensus 541 ~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl 582 (1313)
.+.|- ++|++ +.| .+.||++|+|..
T Consensus 293 rv~wN-------mtGti-----LsS-----tGdDG~VRLWka 317 (361)
T KOG2445|consen 293 RVRWN-------MTGTI-----LSS-----TGDDGCVRLWKA 317 (361)
T ss_pred EEEEe-------eeeeE-----Eee-----cCCCceeeehhh
Confidence 77663 36653 333 345999999985
No 119
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.48 E-value=5.7e-12 Score=136.94 Aligned_cols=132 Identities=22% Similarity=0.330 Sum_probs=118.8
Q ss_pred EEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEE
Q 000743 345 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 424 (1313)
Q Consensus 345 LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWD 424 (1313)
++.-.+.|.|.|..|- .-++++.++.|.....|+.|+ |+| +++++||.|..+-+||
T Consensus 162 Fflt~GlG~v~ILsyp---------------sLkpv~si~AH~snCicI~f~-----p~G----ryfA~GsADAlvSLWD 217 (313)
T KOG1407|consen 162 FFLTNGLGCVEILSYP---------------SLKPVQSIKAHPSNCICIEFD-----PDG----RYFATGSADALVSLWD 217 (313)
T ss_pred EEEecCCceEEEEecc---------------ccccccccccCCcceEEEEEC-----CCC----ceEeeccccceeeccC
Confidence 4455667999997773 347899999999999999998 567 9999999999999999
Q ss_pred CCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEE
Q 000743 425 LGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACL 504 (1313)
Q Consensus 425 l~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latg 504 (1313)
+...-|++.|..+.-+|+.+.|+-+ |++|+|+|+|+.|-|=++++|..+..++ +.++...|+|||....|+-+
T Consensus 218 ~~ELiC~R~isRldwpVRTlSFS~d------g~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA 290 (313)
T KOG1407|consen 218 VDELICERCISRLDWPVRTLSFSHD------GRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYA 290 (313)
T ss_pred hhHhhhheeeccccCceEEEEeccC------cceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEE
Confidence 9999999999999999999999999 8999999999999999999999999987 66788999999999999998
Q ss_pred ecC
Q 000743 505 CRD 507 (1313)
Q Consensus 505 s~D 507 (1313)
|.|
T Consensus 291 ~dd 293 (313)
T KOG1407|consen 291 CDD 293 (313)
T ss_pred ecC
Confidence 877
No 120
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.48 E-value=1e-12 Score=145.08 Aligned_cols=200 Identities=18% Similarity=0.217 Sum_probs=138.1
Q ss_pred ccccCC---EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEE
Q 000743 338 SFYAPY---AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSG 414 (1313)
Q Consensus 338 ~~fsP~---~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSG 414 (1313)
..|+|. .+++|+.||+||+ |++...+ .. .+ +....|.++|.+++|+ .|| ..+++|
T Consensus 33 l~FSP~~~~~~~A~SWD~tVR~--wevq~~g--------~~--~~-ka~~~~~~PvL~v~Ws-----ddg----skVf~g 90 (347)
T KOG0647|consen 33 LAFSPQADNLLAAGSWDGTVRI--WEVQNSG--------QL--VP-KAQQSHDGPVLDVCWS-----DDG----SKVFSG 90 (347)
T ss_pred eEeccccCceEEecccCCceEE--EEEecCC--------cc--cc-hhhhccCCCeEEEEEc-----cCC----ceEEee
Confidence 666663 3669999999999 5532210 00 11 4456799999999998 566 899999
Q ss_pred eCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEec-----------
Q 000743 415 SMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFP----------- 483 (1313)
Q Consensus 415 S~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~----------- 483 (1313)
+.|+.+++||+.+++ ..++..|.++|.++.|-+... ..+|++||+|++++.||.|...++.++.
T Consensus 91 ~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~----~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~ 165 (347)
T KOG0647|consen 91 GCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMN----YQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVL 165 (347)
T ss_pred ccCCceEEEEccCCC-eeeeeecccceeEEEEecCCC----cceeEecccccceeecccCCCCeeeeeeccceeeehhcc
Confidence 999999999999995 456667999999999988632 3699999999999999999765443221
Q ss_pred --------------------------CCCC----CcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCC--cEEEE
Q 000743 484 --------------------------GHPN----YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG--ARERV 531 (1313)
Q Consensus 484 --------------------------gH~~----~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG--~lv~~ 531 (1313)
.+.+ .++||+..++.+..+.|+.. |.+.|-.+..+ ..-.+
T Consensus 166 ~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiE--------Grv~iq~id~~~~~~nFt 237 (347)
T KOG0647|consen 166 YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIE--------GRVAIQYIDDPNPKDNFT 237 (347)
T ss_pred CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeec--------ceEEEEecCCCCccCcee
Confidence 1222 25688887777766776665 88888888776 44456
Q ss_pred EeCCCCcee--E-EeeecccccceeecccccCCcccccCcccccCCCcEEEEeCC
Q 000743 532 LRGTASHSM--F-DHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 583 (1313)
Q Consensus 532 L~GH~a~Vi--~-~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~ 583 (1313)
++.|+..-. . +...+++...- ..+-++.+.+||++..||-.
T Consensus 238 FkCHR~~~~~~~~VYaVNsi~FhP-----------~hgtlvTaGsDGtf~FWDkd 281 (347)
T KOG0647|consen 238 FKCHRSTNSVNDDVYAVNSIAFHP-----------VHGTLVTAGSDGTFSFWDKD 281 (347)
T ss_pred EEEeccCCCCCCceEEecceEeec-----------ccceEEEecCCceEEEecch
Confidence 667764220 0 00011111111 22335667779999999954
No 121
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=7.1e-13 Score=142.72 Aligned_cols=176 Identities=19% Similarity=0.297 Sum_probs=131.5
Q ss_pred ceecccCCceEEEEeeeecccccCC----EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEE
Q 000743 319 RDDFVHKEKIVSSSMVISESFYAPY----AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLA 394 (1313)
Q Consensus 319 ~~~~~~H~~~Vts~l~is~~~fsP~----~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLa 394 (1313)
...+..|...|++ +.|.|. .|+||+.||.|.|..++-. -.|+ ..+....|.-.|+++.
T Consensus 95 ~~e~~~h~~SVNs------V~wapheygl~LacasSDG~vsvl~~~~~-------g~w~-----t~ki~~aH~~GvnsVs 156 (299)
T KOG1332|consen 95 AYEHAAHSASVNS------VAWAPHEYGLLLACASSDGKVSVLTYDSS-------GGWT-----TSKIVFAHEIGVNSVS 156 (299)
T ss_pred hhhhhhhccccee------ecccccccceEEEEeeCCCcEEEEEEcCC-------CCcc-----chhhhhccccccceee
Confidence 4567789999999 666665 3999999999999776521 1122 2455678999999999
Q ss_pred EeccccCCCC-------CccCcEEEEEeCCCcEEEEECCCCc--eEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCC
Q 000743 395 AHRMVGTAKG-------WSFNEVLVSGSMDCSIRIWDLGSGN--LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGED 465 (1313)
Q Consensus 395 fsP~~s~pDG-------r~~~~~LaSGS~DgtIrVWDl~tg~--~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~D 465 (1313)
|.|.. .+| ......|+||+.|..|+||+..+++ ..++|.+|.+.|+.++|.|... .+ ..+|+|+|.|
T Consensus 157 wapa~--~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~g-l~-~s~iAS~SqD 232 (299)
T KOG1332|consen 157 WAPAS--APGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVG-LP-KSTIASCSQD 232 (299)
T ss_pred ecCcC--CCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccC-CC-ceeeEEecCC
Confidence 99832 121 0112579999999999999998764 5566999999999999999741 11 2589999999
Q ss_pred CeEEEEECCCC-c--EEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECC
Q 000743 466 FSVALASLETL-R--VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 524 (1313)
Q Consensus 466 gtV~LWDL~t~-~--~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlr 524 (1313)
++|.||..+.- + ....+......++.+.|++.|+.|++++.| +.|++|.-.
T Consensus 233 g~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~Gd--------Nkvtlwke~ 286 (299)
T KOG1332|consen 233 GTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGD--------NKVTLWKEN 286 (299)
T ss_pred CcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCC--------cEEEEEEeC
Confidence 99999987622 1 112233345678999999999999997655 999999743
No 122
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.48 E-value=1.9e-12 Score=140.89 Aligned_cols=168 Identities=14% Similarity=0.168 Sum_probs=139.9
Q ss_pred EEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEE
Q 000743 382 YFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLS 461 (1313)
Q Consensus 382 ~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaS 461 (1313)
.|.||..+++-+.|+ .+| ++|.|++.|.++.+|--.+|+.+.++.||++.|+++...-+ ...+++
T Consensus 5 ~l~GHERplTqiKyN-----~eG----DLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~------s~~liT 69 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYN-----REG----DLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWD------SKHLIT 69 (327)
T ss_pred ccccCccccceEEec-----CCC----cEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCC------cceeee
Confidence 467999999999998 567 99999999999999999999999999999999999999988 589999
Q ss_pred EeCCCeEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECC-------CCcEEEEEeC
Q 000743 462 VGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK-------TGARERVLRG 534 (1313)
Q Consensus 462 gS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlr-------TG~lv~~L~G 534 (1313)
|+.|.+++|||+++|+++..++-. .+|..+.|+++|++++....+ ..+.. +.|.++|++ +.++...+.-
T Consensus 70 GSAD~t~kLWDv~tGk~la~~k~~-~~Vk~~~F~~~gn~~l~~tD~-~mg~~--~~v~~fdi~~~~~~~~s~ep~~kI~t 145 (327)
T KOG0643|consen 70 GSADQTAKLWDVETGKQLATWKTN-SPVKRVDFSFGGNLILASTDK-QMGYT--CFVSVFDIRDDSSDIDSEEPYLKIPT 145 (327)
T ss_pred ccccceeEEEEcCCCcEEEEeecC-CeeEEEeeccCCcEEEEEehh-hcCcc--eEEEEEEccCChhhhcccCceEEecC
Confidence 999999999999999999999754 589999999999988765443 22332 799999998 4556788888
Q ss_pred CCCceeEEeeecccccceeecccccCCcccccCcccccCCCcEEEEeCCcc
Q 000743 535 TASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQND 585 (1313)
Q Consensus 535 H~a~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~~~ 585 (1313)
+...++.+.|-+ ....++.|- +||.|.+||+++.
T Consensus 146 ~~skit~a~Wg~-l~~~ii~Gh----------------e~G~is~~da~~g 179 (327)
T KOG0643|consen 146 PDSKITSALWGP-LGETIIAGH----------------EDGSISIYDARTG 179 (327)
T ss_pred Cccceeeeeecc-cCCEEEEec----------------CCCcEEEEEcccC
Confidence 888887776643 222344443 4999999999863
No 123
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.48 E-value=3.6e-13 Score=147.67 Aligned_cols=164 Identities=21% Similarity=0.227 Sum_probs=132.5
Q ss_pred EecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCc--------eEEE-------EeccCCCEEEEEEC
Q 000743 383 FLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN--------LITV-------MHHHVAPVRQIILS 447 (1313)
Q Consensus 383 L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~--------~l~t-------~~gH~~~V~sV~fs 447 (1313)
-+-|.+.|++|...| ..| ++++||+.||.|-+||+.... +.+. -.+|...|.++.|-
T Consensus 39 ~r~HgGsvNsL~id~----teg----rymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~Wy 110 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDL----TEG----RYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWY 110 (397)
T ss_pred eccCCCccceeeecc----ccc----eEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEe
Confidence 346889999999986 455 999999999999999998532 1111 13578899999999
Q ss_pred CCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEEcCCC---CEEEEEecCCCCCCCCCCEEEEEECC
Q 000743 448 PPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPR---GYIACLCRDHSRTSDAVDVLFIWDVK 524 (1313)
Q Consensus 448 Pd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg---~~Latgs~DlsGssD~DgtIrVWDlr 524 (1313)
|-. ...|.|+|-|+++++||..+.+....|.- ++.|++-+|+|-. ..+++|..| -.|++-|+.
T Consensus 111 P~D-----tGmFtssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~--------~~VrLCDi~ 176 (397)
T KOG4283|consen 111 PID-----TGMFTSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRD--------VQVRLCDIA 176 (397)
T ss_pred eec-----CceeecccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCC--------CcEEEEecc
Confidence 974 36899999999999999999988877763 4578888888843 255555444 899999999
Q ss_pred CCcEEEEEeCCCCceeEEeeecccccceeecccccCCcccccCcccccCCCcEEEEeCCc
Q 000743 525 TGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 584 (1313)
Q Consensus 525 TG~lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~~ 584 (1313)
+|..-.+++||++.|+.+.||+...-...+|+. |+++|+||+++
T Consensus 177 SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsa----------------Dg~irlWDiRr 220 (397)
T KOG4283|consen 177 SGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSA----------------DGAIRLWDIRR 220 (397)
T ss_pred CCcceeeeccccCceEEEEeccCceeEEEecCC----------------CceEEEEEeec
Confidence 999999999999999999999865554556654 99999999985
No 124
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.46 E-value=2.4e-12 Score=142.78 Aligned_cols=164 Identities=19% Similarity=0.287 Sum_probs=130.8
Q ss_pred EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEE
Q 000743 344 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 423 (1313)
Q Consensus 344 ~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVW 423 (1313)
.++.|+-...|.-++.+.-...+.....| +-.+...+..|.+.+++++.+ | .+++|||.|-+|+||
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~---~l~~lF~~~aH~~sitavAVs-------~----~~~aSGssDetI~IY 68 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKP---TLKPLFAFSAHAGSITALAVS-------G----PYVASGSSDETIHIY 68 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccce---eeeccccccccccceeEEEec-------c----eeEeccCCCCcEEEE
Confidence 36666666665553333221111111111 224577789999999999986 3 899999999999999
Q ss_pred ECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEE
Q 000743 424 DLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIAC 503 (1313)
Q Consensus 424 Dl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Lat 503 (1313)
|+.+...+..+-.|.+.|+++.|.++.. ...++||++||.|.+|+.....++..+++|.+.|+.++.||.++.-++
T Consensus 69 Dm~k~~qlg~ll~HagsitaL~F~~~~S----~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALs 144 (362)
T KOG0294|consen 69 DMRKRKQLGILLSHAGSITALKFYPPLS----KSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALS 144 (362)
T ss_pred eccchhhhcceeccccceEEEEecCCcc----hhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEE
Confidence 9999999999999999999999998732 237999999999999999999999999999999999999999999888
Q ss_pred EecCCCCCCCCCCEEEEEECCCCcEEEEEe
Q 000743 504 LCRDHSRTSDAVDVLFIWDVKTGARERVLR 533 (1313)
Q Consensus 504 gs~DlsGssD~DgtIrVWDlrTG~lv~~L~ 533 (1313)
.+.| +++++||+-+|+.-.++.
T Consensus 145 Vg~D--------~~lr~WNLV~Gr~a~v~~ 166 (362)
T KOG0294|consen 145 VGGD--------QVLRTWNLVRGRVAFVLN 166 (362)
T ss_pred EcCC--------ceeeeehhhcCccceeec
Confidence 7766 999999998877655544
No 125
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.43 E-value=4e-12 Score=144.55 Aligned_cols=252 Identities=15% Similarity=0.161 Sum_probs=162.3
Q ss_pred eEEEEEeeeeeEEEEeeeeccCCCccccceEEEEEecccCCCCCceeEEeecCC--eeeeeeecc--e-eeeCCCCeeee
Q 000743 219 SIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGF--SFVDWVNNS--T-FLDENEGSCTG 293 (1313)
Q Consensus 219 ~i~~iq~~~~lv~i~svc~d~e~~l~W~p~vtVWsl~~~~~~~~~q~~~~g~~~--~~~dWiss~--l-~~~~~dGi~Iw 293 (1313)
.+-|+||.+.+--+.+...|. +.-||.+..... -...-++.|+.. .+.-|.-+. + .+...+.+..|
T Consensus 226 EVWfl~FS~nGkyLAsaSkD~--------Taiiw~v~~d~~-~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 226 EVWFLQFSHNGKYLASASKDS--------TAIIWIVVYDVH-FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLW 296 (519)
T ss_pred cEEEEEEcCCCeeEeeccCCc--------eEEEEEEecCcc-eeeeeeeecccCceEEEEECCCCCeEEecCchHheeec
Confidence 488999988777776665655 567886642211 011223344333 344554333 1 12222233445
Q ss_pred eeccccccccccccccccCCCCCCCceec-ccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccC------C
Q 000743 294 KSDLTFCQDTVPRSEHVDSRQAGDGRDDF-VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERH------N 366 (1313)
Q Consensus 294 k~~~ss~~~~i~~l~~~~~~~~~~~~~~~-~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~------~ 366 (1313)
++..... ...+ .+|...+.++.+.++.. ++++|+.|+.|.. |++.... -
T Consensus 297 Dv~tgd~------------------~~~y~~~~~~S~~sc~W~pDg~----~~V~Gs~dr~i~~--wdlDgn~~~~W~gv 352 (519)
T KOG0293|consen 297 DVDTGDL------------------RHLYPSGLGFSVSSCAWCPDGF----RFVTGSPDRTIIM--WDLDGNILGNWEGV 352 (519)
T ss_pred cCCcchh------------------hhhcccCcCCCcceeEEccCCc----eeEecCCCCcEEE--ecCCcchhhccccc
Confidence 4433221 1122 23567888877777665 7999999999998 5432221 1
Q ss_pred CCCCccccC---CceEEEE-------------------EecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEE
Q 000743 367 SPGASLKVN---SHVSRQY-------------------FLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 424 (1313)
Q Consensus 367 ~~~~~wdv~---tg~~~~~-------------------L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWD 424 (1313)
+..+.||+. .|+.+.. +..-..+|+++..+ .|| .+++.-=.+..|++||
T Consensus 353 r~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS-----~d~----k~~LvnL~~qei~LWD 423 (519)
T KOG0293|consen 353 RDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSIS-----KDG----KLALVNLQDQEIHLWD 423 (519)
T ss_pred ccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEc-----CCC----cEEEEEcccCeeEEee
Confidence 222334332 3322211 11223467777776 455 7888888999999999
Q ss_pred CCCCceEEEEeccCCC--EEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEE
Q 000743 425 LGSGNLITVMHHHVAP--VRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIA 502 (1313)
Q Consensus 425 l~tg~~l~t~~gH~~~--V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~La 502 (1313)
+...+.+.++.||... |..-+|.-.+ ..+++|||+|+.|+||+.++++++..+.||...|+||+|+|...+++
T Consensus 424 l~e~~lv~kY~Ghkq~~fiIrSCFgg~~-----~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ 498 (519)
T KOG0293|consen 424 LEENKLVRKYFGHKQGHFIIRSCFGGGN-----DKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMF 498 (519)
T ss_pred cchhhHHHHhhcccccceEEEeccCCCC-----cceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHh
Confidence 9999999999999764 3344454332 37999999999999999999999999999999999999999988665
Q ss_pred EEecCCCCCCCCCCEEEEEECC
Q 000743 503 CLCRDHSRTSDAVDVLFIWDVK 524 (1313)
Q Consensus 503 tgs~DlsGssD~DgtIrVWDlr 524 (1313)
+...| ||+||||-..
T Consensus 499 ASasD-------DgtIRIWg~~ 513 (519)
T KOG0293|consen 499 ASASD-------DGTIRIWGPS 513 (519)
T ss_pred hccCC-------CCeEEEecCC
Confidence 32222 4999999765
No 126
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=5.4e-11 Score=132.64 Aligned_cols=194 Identities=18% Similarity=0.187 Sum_probs=148.1
Q ss_pred cccccccccCCCCCCCceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEE
Q 000743 303 TVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQY 382 (1313)
Q Consensus 303 ~i~~l~~~~~~~~~~~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~ 382 (1313)
.+..++-.+| .-+..|.||...|+++...|-.. ..++++.|++|++ ||+. ..++...
T Consensus 81 tIryLsl~dN----kylRYF~GH~~~V~sL~~sP~~d----~FlS~S~D~tvrL--WDlR-------------~~~cqg~ 137 (311)
T KOG1446|consen 81 TIRYLSLHDN----KYLRYFPGHKKRVNSLSVSPKDD----TFLSSSLDKTVRL--WDLR-------------VKKCQGL 137 (311)
T ss_pred ceEEEEeecC----ceEEEcCCCCceEEEEEecCCCC----eEEecccCCeEEe--eEec-------------CCCCceE
Confidence 3444444444 34789999999999965555443 6999999999999 6642 2344444
Q ss_pred EecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCC--ceEEEEecc---CCCEEEEEECCCCCCCCCCC
Q 000743 383 FLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG--NLITVMHHH---VAPVRQIILSPPQTEHPWSD 457 (1313)
Q Consensus 383 L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg--~~l~t~~gH---~~~V~sV~fsPd~~~~~~g~ 457 (1313)
+.--.. ...+|. |+| -++|.|.....|+++|++.. .+..+|.-. ....+.+.|+|+ |+
T Consensus 138 l~~~~~--pi~AfD-----p~G----LifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~d------GK 200 (311)
T KOG1446|consen 138 LNLSGR--PIAAFD-----PEG----LIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPD------GK 200 (311)
T ss_pred EecCCC--cceeEC-----CCC----cEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCC------CC
Confidence 433222 245777 456 78888887779999999854 355555433 567899999999 79
Q ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCCCCc---EEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeC
Q 000743 458 CFLSVGEDFSVALASLETLRVERMFPGHPNYP---AKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 534 (1313)
Q Consensus 458 ~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V---~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~G 534 (1313)
+++-+...+.+.+.|.-+|..+.++.++...- ...+|.|+++++++|+.| |+|.+|++++|+.+..++|
T Consensus 201 ~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~d--------g~i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 201 SILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDD--------GTIHVWNLETGKKVAVLRG 272 (311)
T ss_pred EEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCC--------CcEEEEEcCCCcEeeEecC
Confidence 99988999999999999999999998886542 588999999999987665 9999999999999999999
Q ss_pred -CCCceeEEee
Q 000743 535 -TASHSMFDHF 544 (1313)
Q Consensus 535 -H~a~Vi~~~~ 544 (1313)
+...+.++.|
T Consensus 273 ~~~~~~~~~~f 283 (311)
T KOG1446|consen 273 PNGGPVSCVRF 283 (311)
T ss_pred CCCCCcccccc
Confidence 6777755554
No 127
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.42 E-value=5.4e-12 Score=138.46 Aligned_cols=246 Identities=17% Similarity=0.190 Sum_probs=165.5
Q ss_pred eeeeeEEEEeeeeccCCCccccceEEEEEecccCCCCCc---ee-EEee--cCC--eeeeeeecc--eeeeCCCCeeeee
Q 000743 225 MSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGK---QC-RMVG--EGF--SFVDWVNNS--TFLDENEGSCTGK 294 (1313)
Q Consensus 225 ~~~~lv~i~svc~d~e~~l~W~p~vtVWsl~~~~~~~~~---q~-~~~g--~~~--~~~dWiss~--l~~~~~dGi~Iwk 294 (1313)
.....-++...||++.........+.||.+......... ++ ..+. .-+ ..+.|.-+. +..+..+.+.+|+
T Consensus 71 s~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~dn~i~l~~ 150 (370)
T KOG1007|consen 71 SSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMDDNNIVLWS 150 (370)
T ss_pred cCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEeccCceEEEE
Confidence 333345666778887777766678999998765433211 11 1111 111 335676544 5666666677788
Q ss_pred eccccc-cccccccccccCCCCCCCceecccCCceEEEEeeeecccccCC---EEEEEEcCCcEEEEEeeccccCCCCCC
Q 000743 295 SDLTFC-QDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPY---AIVYGFFSGEIEVIQFDLFERHNSPGA 370 (1313)
Q Consensus 295 ~~~ss~-~~~i~~l~~~~~~~~~~~~~~~~~H~~~Vts~l~is~~~fsP~---~LvsGs~DGsI~I~~wdll~~~~~~~~ 370 (1313)
+..++. ...++.... .+|....++ ..|+|. ..+....|+++.. ||+.
T Consensus 151 l~ess~~vaev~ss~s-------------~e~~~~fts------g~WspHHdgnqv~tt~d~tl~~--~D~R-------- 201 (370)
T KOG1007|consen 151 LDESSKIVAEVLSSES-------------AEMRHSFTS------GAWSPHHDGNQVATTSDSTLQF--WDLR-------- 201 (370)
T ss_pred cccCcchheeeccccc-------------ccccceecc------cccCCCCccceEEEeCCCcEEE--EEcc--------
Confidence 876655 222221111 114444454 667663 2555567888888 6542
Q ss_pred ccccCCceEE-EEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCC-CceEEEEeccCCCEEEEEECC
Q 000743 371 SLKVNSHVSR-QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS-GNLITVMHHHVAPVRQIILSP 448 (1313)
Q Consensus 371 ~wdv~tg~~~-~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~t-g~~l~t~~gH~~~V~sV~fsP 448 (1313)
+.++. ..-..|...|..+.|+| + .+.+|+||++||.||+||++. ..++..+.+|+.+|++|.|+|
T Consensus 202 -----T~~~~~sI~dAHgq~vrdlDfNp-----n---kq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~ 268 (370)
T KOG1007|consen 202 -----TMKKNNSIEDAHGQRVRDLDFNP-----N---KQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNP 268 (370)
T ss_pred -----chhhhcchhhhhcceeeeccCCC-----C---ceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecC
Confidence 22222 23357888999999997 1 357999999999999999985 458999999999999999999
Q ss_pred CCCCCCCCCEEEEEeCCCeEEEEECCCC-----------------------------cEEEEecCCCCCcEEEEEcCCCC
Q 000743 449 PQTEHPWSDCFLSVGEDFSVALASLETL-----------------------------RVERMFPGHPNYPAKVVWDCPRG 499 (1313)
Q Consensus 449 d~~~~~~g~~LaSgS~DgtV~LWDL~t~-----------------------------~~l~~l~gH~~~V~sVafsPdg~ 499 (1313)
.. .++|+|+|.|..|.+|....- ..+.++..|.+.|++++|+..+.
T Consensus 269 ~h-----dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadP 343 (370)
T KOG1007|consen 269 EH-----DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADP 343 (370)
T ss_pred cc-----ceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCC
Confidence 86 589999999999999965321 13446778999999999999999
Q ss_pred EEEEEecCCCCCCCCCCEEEEEECC
Q 000743 500 YIACLCRDHSRTSDAVDVLFIWDVK 524 (1313)
Q Consensus 500 ~Latgs~DlsGssD~DgtIrVWDlr 524 (1313)
+++. +-.+||.+.|=.+.
T Consensus 344 WiFA-------SLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 344 WIFA-------SLSYDGRVIISSVP 361 (370)
T ss_pred eeEE-------EeccCceEEeecCC
Confidence 8874 22234888775553
No 128
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=7.4e-12 Score=138.66 Aligned_cols=171 Identities=19% Similarity=0.335 Sum_probs=134.6
Q ss_pred cccCC--EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeC
Q 000743 339 FYAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSM 416 (1313)
Q Consensus 339 ~fsP~--~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~ 416 (1313)
.|++. .++.|+.||.+.||+++ +...-+.|.+|..+|.+++|+ +|| +.|+|+|.
T Consensus 30 ~Fs~~G~~lAvGc~nG~vvI~D~~---------------T~~iar~lsaH~~pi~sl~WS-----~dg----r~LltsS~ 85 (405)
T KOG1273|consen 30 QFSRWGDYLAVGCANGRVVIYDFD---------------TFRIARMLSAHVRPITSLCWS-----RDG----RKLLTSSR 85 (405)
T ss_pred EeccCcceeeeeccCCcEEEEEcc---------------ccchhhhhhccccceeEEEec-----CCC----CEeeeecC
Confidence 45444 49999999999995443 224567789999999999999 577 89999999
Q ss_pred CCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCC-----------------------------------------CCC
Q 000743 417 DCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTE-----------------------------------------HPW 455 (1313)
Q Consensus 417 DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~-----------------------------------------~~~ 455 (1313)
|..|++||+..|.+++.+. ..++|+...|+|.... .+.
T Consensus 86 D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~ 164 (405)
T KOG1273|consen 86 DWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRR 164 (405)
T ss_pred CceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCC
Confidence 9999999999999999987 7788888888885321 356
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecC------------------------------------CC---C---------
Q 000743 456 SDCFLSVGEDFSVALASLETLRVERMFPG------------------------------------HP---N--------- 487 (1313)
Q Consensus 456 g~~LaSgS~DgtV~LWDL~t~~~l~~l~g------------------------------------H~---~--------- 487 (1313)
|++|++|...|.+.++|.++.+++..++- |. +
T Consensus 165 g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~q 244 (405)
T KOG1273|consen 165 GKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQ 244 (405)
T ss_pred CCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHH
Confidence 89999999999999999887765543220 11 0
Q ss_pred ------CcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeE
Q 000743 488 ------YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMF 541 (1313)
Q Consensus 488 ------~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~ 541 (1313)
.-.+++|+.+|.|+..++.- -..+|||.-..|.+++.+.|..++...
T Consensus 245 DvVNk~~Wk~ccfs~dgeYv~a~s~~-------aHaLYIWE~~~GsLVKILhG~kgE~l~ 297 (405)
T KOG1273|consen 245 DVVNKLQWKKCCFSGDGEYVCAGSAR-------AHALYIWEKSIGSLVKILHGTKGEELL 297 (405)
T ss_pred HHHhhhhhhheeecCCccEEEecccc-------ceeEEEEecCCcceeeeecCCchhhee
Confidence 12477888899988865432 278999999999999999999976644
No 129
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=3.9e-13 Score=168.22 Aligned_cols=199 Identities=20% Similarity=0.217 Sum_probs=153.7
Q ss_pred EEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEE
Q 000743 345 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 424 (1313)
Q Consensus 345 LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWD 424 (1313)
|+.|.+||.|.+ |+...-. .-.....+.++.-|++.|..|.|++ ...++|+||+.||.|.|||
T Consensus 83 IaGG~edG~I~l--y~p~~~~-------~~~~~~~la~~~~h~G~V~gLDfN~--------~q~nlLASGa~~geI~iWD 145 (1049)
T KOG0307|consen 83 IAGGLEDGNIVL--YDPASII-------ANASEEVLATKSKHTGPVLGLDFNP--------FQGNLLASGADDGEILIWD 145 (1049)
T ss_pred eeccccCCceEE--ecchhhc-------cCcchHHHhhhcccCCceeeeeccc--------cCCceeeccCCCCcEEEec
Confidence 777889999999 6532210 0022245677889999999999995 2347999999999999999
Q ss_pred CCCCceEEEEe--ccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC--CcEEEEEcCCCC-
Q 000743 425 LGSGNLITVMH--HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN--YPAKVVWDCPRG- 499 (1313)
Q Consensus 425 l~tg~~l~t~~--gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~--~V~sVafsPdg~- 499 (1313)
+...+.-.++- .-.+.|.+++|+... .+.|+|++.++.+.+||+|..+++-.+..|.. .+..+.|||+.-
T Consensus 146 lnn~~tP~~~~~~~~~~eI~~lsWNrkv-----qhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aT 220 (1049)
T KOG0307|consen 146 LNKPETPFTPGSQAPPSEIKCLSWNRKV-----SHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHAT 220 (1049)
T ss_pred cCCcCCCCCCCCCCCcccceEeccchhh-----hHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCce
Confidence 98654333331 145679999998764 57999999999999999999998888877765 367899999875
Q ss_pred EEEEEecCCCCCCCCCCEEEEEECCC-CcEEEEEeCCCCceeEEeeecccccceeecccccCCcccccCcccccCCCcEE
Q 000743 500 YIACLCRDHSRTSDAVDVLFIWDVKT-GARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFR 578 (1313)
Q Consensus 500 ~Latgs~DlsGssD~DgtIrVWDlrT-G~lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr 578 (1313)
.|++++.| |..-.|.+||+|. ...++++++|...++.+.||.... ..++++.+|+++-
T Consensus 221 ql~~As~d-----d~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~----------------~lllSsgkD~~ii 279 (1049)
T KOG0307|consen 221 QLLVASGD-----DSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDP----------------RLLLSSGKDNRII 279 (1049)
T ss_pred eeeeecCC-----CCCceeEeecccccCCchhhhcccccceeeeccCCCCc----------------hhhhcccCCCCee
Confidence 56665554 5557999999987 457899999999999999997432 3567788899999
Q ss_pred EEeCCccc
Q 000743 579 QSQIQNDE 586 (1313)
Q Consensus 579 ~Wdl~~~~ 586 (1313)
.||.+..|
T Consensus 280 ~wN~~tgE 287 (1049)
T KOG0307|consen 280 CWNPNTGE 287 (1049)
T ss_pred EecCCCce
Confidence 99987644
No 130
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.41 E-value=4.9e-12 Score=136.43 Aligned_cols=167 Identities=17% Similarity=0.209 Sum_probs=139.5
Q ss_pred CCceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEe
Q 000743 317 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAH 396 (1313)
Q Consensus 317 ~~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafs 396 (1313)
.+...+.+|++.|...++..... .+++.+.|++||+ || ..+++.+++|.- ...|+++.++
T Consensus 134 App~E~~ghtg~Ir~v~wc~eD~----~iLSSadd~tVRL--WD-------------~rTgt~v~sL~~-~s~VtSlEvs 193 (334)
T KOG0278|consen 134 APPKEISGHTGGIRTVLWCHEDK----CILSSADDKTVRL--WD-------------HRTGTEVQSLEF-NSPVTSLEVS 193 (334)
T ss_pred CCchhhcCCCCcceeEEEeccCc----eEEeeccCCceEE--EE-------------eccCcEEEEEec-CCCCcceeec
Confidence 45678899999999877665554 4788899999999 54 467777777753 3469999998
Q ss_pred ccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCC
Q 000743 397 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL 476 (1313)
Q Consensus 397 P~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~ 476 (1313)
+|| .+++-...++|++||..+...++.++ -...|.+..++|+ ...+++|+.|..+..||..++
T Consensus 194 -----~dG-----~ilTia~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~------k~~fVaGged~~~~kfDy~Tg 256 (334)
T KOG0278|consen 194 -----QDG-----RILTIAYGSSVKFWDAKSFGLLKSYK-MPCNVESASLHPK------KEFFVAGGEDFKVYKFDYNTG 256 (334)
T ss_pred -----cCC-----CEEEEecCceeEEeccccccceeecc-CccccccccccCC------CceEEecCcceEEEEEeccCC
Confidence 455 45667778899999999999988887 4567999999998 579999999999999999999
Q ss_pred cEEEEe-cCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcE
Q 000743 477 RVERMF-PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 528 (1313)
Q Consensus 477 ~~l~~l-~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~l 528 (1313)
+.+..+ .+|.++|.|+.|+|+|..-++|++| |+|++|++..++.
T Consensus 257 eEi~~~nkgh~gpVhcVrFSPdGE~yAsGSED--------GTirlWQt~~~~~ 301 (334)
T KOG0278|consen 257 EEIGSYNKGHFGPVHCVRFSPDGELYASGSED--------GTIRLWQTTPGKT 301 (334)
T ss_pred ceeeecccCCCCceEEEEECCCCceeeccCCC--------ceEEEEEecCCCc
Confidence 998886 8999999999999999999998877 9999999876553
No 131
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.40 E-value=3.3e-12 Score=150.29 Aligned_cols=212 Identities=21% Similarity=0.240 Sum_probs=158.6
Q ss_pred ceecccCCceEEEEeeeecccccCC--EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEe
Q 000743 319 RDDFVHKEKIVSSSMVISESFYAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAH 396 (1313)
Q Consensus 319 ~~~~~~H~~~Vts~l~is~~~fsP~--~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafs 396 (1313)
..++..|.+.+++ ..|+|. -+++++.||.+.+ |++.... ......-+++.+|++|.++|.|+++.
T Consensus 287 k~tl~s~~d~ir~------l~~~~sep~lit~sed~~lk~--WnLqk~~-----~s~~~~~epi~tfraH~gPVl~v~v~ 353 (577)
T KOG0642|consen 287 KFTLRSHDDCIRA------LAFHPSEPVLITASEDGTLKL--WNLQKAK-----KSAEKDVEPILTFRAHEGPVLCVVVP 353 (577)
T ss_pred eeeeecchhhhhh------hhcCCCCCeEEEeccccchhh--hhhcccC-----CccccceeeeEEEecccCceEEEEec
Confidence 3466777777777 555555 5999999999999 7653221 11223447899999999999999997
Q ss_pred ccccCCCCCccCcEEEEEeCCCcEEEEECCC------C----ceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCC
Q 000743 397 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS------G----NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDF 466 (1313)
Q Consensus 397 P~~s~pDGr~~~~~LaSGS~DgtIrVWDl~t------g----~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~Dg 466 (1313)
.+| ++++||+.||+|+.|++.. . .....+.||++.|+.+++++. .+.|++++.||
T Consensus 354 -----~n~----~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~------~~~Llscs~Dg 418 (577)
T KOG0642|consen 354 -----SNG----EHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSST------KDRLLSCSSDG 418 (577)
T ss_pred -----CCc----eEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccc------ccceeeecCCc
Confidence 345 8999999999999996541 1 346678999999999999998 46799999999
Q ss_pred eEEEEECCCCcE--------------------------------------------EEEec-----CC--CCCcEEEEEc
Q 000743 467 SVALASLETLRV--------------------------------------------ERMFP-----GH--PNYPAKVVWD 495 (1313)
Q Consensus 467 tV~LWDL~t~~~--------------------------------------------l~~l~-----gH--~~~V~sVafs 495 (1313)
|+++|+.....+ +..+. +. ...+..+.++
T Consensus 419 Tvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~ 498 (577)
T KOG0642|consen 419 TVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSH 498 (577)
T ss_pred eEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEec
Confidence 999998754322 00110 11 1236788999
Q ss_pred CCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEeeecccccceeecccccCCcccccCcccccCCC
Q 000743 496 CPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDG 575 (1313)
Q Consensus 496 Pdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~Dg 575 (1313)
|...+.+++..| +.|+++|..+|..+.....|...+.+..+- + +|..+ ++.+.|+
T Consensus 499 ~~~~~~~~~hed--------~~Ir~~dn~~~~~l~s~~a~~~svtslai~----~--------ng~~l-----~s~s~d~ 553 (577)
T KOG0642|consen 499 PTADITFTAHED--------RSIRFFDNKTGKILHSMVAHKDSVTSLAID----P--------NGPYL-----MSGSHDG 553 (577)
T ss_pred CCCCeeEecccC--------Cceecccccccccchheeeccceecceeec----C--------CCceE-----EeecCCc
Confidence 999999998877 999999999999999999999888665332 2 12222 3334599
Q ss_pred cEEEEeCC
Q 000743 576 TFRQSQIQ 583 (1313)
Q Consensus 576 tIr~Wdl~ 583 (1313)
.++.|++.
T Consensus 554 sv~l~kld 561 (577)
T KOG0642|consen 554 SVRLWKLD 561 (577)
T ss_pred eeehhhcc
Confidence 99999975
No 132
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.38 E-value=2.8e-12 Score=158.15 Aligned_cols=309 Identities=15% Similarity=0.150 Sum_probs=189.1
Q ss_pred eecccccccccccccccceeEEEEecCCCeEEEEEecccccccccc---ccccCcccCCCCCceeEEEEEeeeeeEEEE-
Q 000743 158 RVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEP---HFEIPAVSYPSGVKFSIHFIQMSLYLLRME- 233 (1313)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~vw~~~~~~~vy~~~~~~~~~~~~~---~~~~p~~~~~~~~~~~i~~iq~~~~lv~i~- 233 (1313)
.+.|.+++++++|++|+|+ .+|+.+++++...+...--..+ ...+-....++..+..+.|.+|..+.+...
T Consensus 1010 ~~~e~dE~~s~~~~~r~wr-----r~R~e~i~kr~~~~~~~~lst~~i~~W~~~~~~~n~~~pk~~~~hpf~p~i~~ad~ 1084 (1387)
T KOG1517|consen 1010 KGAEADEEGSEEREERLWR-----RNRNEKIIKRQASQEIQKLSTNPIGNWDQKFMTGNNQPPKTLKFHPFEPQIAAADD 1084 (1387)
T ss_pred CCccccchhhhHHHHHHHH-----HhhHHHHHHhhcccceeeeccccccchHHHHHhcCCCCCceeeecCCCceeEEcCC
Confidence 5677899999999999999 7888877655533211110000 112223344455566788888777665532
Q ss_pred --eee-eccCCCcc--------------------------------ccceEEEEEecccCCCCCc----------eeEEe
Q 000743 234 --TVC-FHVEETSQ--------------------------------WRPYISVWSLSQKHSGPGK----------QCRMV 268 (1313)
Q Consensus 234 --svc-~d~e~~l~--------------------------------W~p~vtVWsl~~~~~~~~~----------q~~~~ 268 (1313)
.++ +|.+.-.. -+..|+||.-........+ +...-
T Consensus 1085 r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~ 1164 (1387)
T KOG1517|consen 1085 RERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGA 1164 (1387)
T ss_pred cceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccC
Confidence 000 11111000 1123777744322111111 00111
Q ss_pred ecCCeeeeeeecc-eeeeCCC--CeeeeeeccccccccccccccccCCCCCCCceecccCCceEEEEeeeecccccCCEE
Q 000743 269 GEGFSFVDWVNNS-TFLDENE--GSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAI 345 (1313)
Q Consensus 269 g~~~~~~dWiss~-l~~~~~d--Gi~Iwk~~~ss~~~~i~~l~~~~~~~~~~~~~~~~~H~~~Vts~l~is~~~fsP~~L 345 (1313)
...+.+.||.+.. .+-..++ .++||+......-..+|... ...|++ ++...-..+.+
T Consensus 1165 r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s-----------------~t~vTa---LS~~~~~gn~i 1224 (1387)
T KOG1517|consen 1165 RGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGS-----------------STLVTA---LSADLVHGNII 1224 (1387)
T ss_pred CCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCC-----------------Ccccee---ecccccCCceE
Confidence 1234678998777 4444443 45779887766555555332 233444 22222223469
Q ss_pred EEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCcc--EEEEEEeccccCCCCCccCcEEEEEeCCCcEEEE
Q 000743 346 VYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGA--VLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 423 (1313)
Q Consensus 346 vsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~--V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVW 423 (1313)
+.|..||++++ ||.... .....+...+.|++. |..+.+.+ .| -..|+|||.||.|++|
T Consensus 1225 ~AGfaDGsvRv--yD~R~a----------~~ds~v~~~R~h~~~~~Iv~~slq~-----~G---~~elvSgs~~G~I~~~ 1284 (1387)
T KOG1517|consen 1225 AAGFADGSVRV--YDRRMA----------PPDSLVCVYREHNDVEPIVHLSLQR-----QG---LGELVSGSQDGDIQLL 1284 (1387)
T ss_pred EEeecCCceEE--eecccC----------CccccceeecccCCcccceeEEeec-----CC---CcceeeeccCCeEEEE
Confidence 99999999999 654332 111356778899988 99998873 34 2379999999999999
Q ss_pred ECCCCceEE--EEeccC--C-CEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC-------CCcEE
Q 000743 424 DLGSGNLIT--VMHHHV--A-PVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHP-------NYPAK 491 (1313)
Q Consensus 424 Dl~tg~~l~--t~~gH~--~-~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~-------~~V~s 491 (1313)
|++...... +...|. + .++++..|++ ...++||+. +.|+||++. |+.+..++.+. +.+.|
T Consensus 1285 DlR~~~~e~~~~iv~~~~yGs~lTal~VH~h------apiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~sc 1356 (1387)
T KOG1517|consen 1285 DLRMSSKETFLTIVAHWEYGSALTALTVHEH------APIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSC 1356 (1387)
T ss_pred ecccCcccccceeeeccccCccceeeeeccC------CCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcce
Confidence 999743222 223333 4 5999999998 589999998 999999985 55554444332 35789
Q ss_pred EEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCc
Q 000743 492 VVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 527 (1313)
Q Consensus 492 VafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~ 527 (1313)
++|||..-.+++|+.| .+|.||....+.
T Consensus 1357 L~FHP~~~llAaG~~D--------s~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1357 LAFHPHRLLLAAGSAD--------STVSIYSCEKPR 1384 (1387)
T ss_pred eeecchhHhhhhccCC--------ceEEEeecCCcC
Confidence 9999999999987555 999999876543
No 133
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.38 E-value=2.6e-11 Score=140.22 Aligned_cols=188 Identities=16% Similarity=0.122 Sum_probs=151.5
Q ss_pred CceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecC-CccEEEEEEe
Q 000743 318 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGH-TGAVLCLAAH 396 (1313)
Q Consensus 318 ~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH-~~~V~sLafs 396 (1313)
....+.+|...|++..|..... .|++++..|+|.|.. +.++.....|.-- ...|.-|.|+
T Consensus 113 ~hr~lkdh~stvt~v~YN~~De----yiAsvs~gGdiiih~---------------~~t~~~tt~f~~~sgqsvRll~ys 173 (673)
T KOG4378|consen 113 IHRFLKDHQSTVTYVDYNNTDE----YIASVSDGGDIIIHG---------------TKTKQKTTTFTIDSGQSVRLLRYS 173 (673)
T ss_pred HhhhccCCcceeEEEEecCCcc----eeEEeccCCcEEEEe---------------cccCccccceecCCCCeEEEeecc
Confidence 4567889999999987776666 599999999999932 2333334444333 3456688898
Q ss_pred ccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEE-eccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCC
Q 000743 397 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVM-HHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET 475 (1313)
Q Consensus 397 P~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~-~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t 475 (1313)
| ....+|.++|+||+|.+||+....+++.+ ..|..+...|+|+|.+ ..+|+|++-|+.|.+||.+.
T Consensus 174 ~--------skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsn-----e~l~vsVG~Dkki~~yD~~s 240 (673)
T KOG4378|consen 174 P--------SKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSN-----EALLVSVGYDKKINIYDIRS 240 (673)
T ss_pred c--------ccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCc-----cceEEEecccceEEEeeccc
Confidence 6 24578999999999999999988877765 5699999999999985 46999999999999999998
Q ss_pred CcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCC-CcEEEEEeCCCCceeEEeeec
Q 000743 476 LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT-GARERVLRGTASHSMFDHFCK 546 (1313)
Q Consensus 476 ~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrT-G~lv~~L~GH~a~Vi~~~~c~ 546 (1313)
.+....+.. ..+...++|.++|.+|+.|... |.|+.||+|. ..++.++..|.+.|+++.|-.
T Consensus 241 ~~s~~~l~y-~~Plstvaf~~~G~~L~aG~s~--------G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~ 303 (673)
T KOG4378|consen 241 QASTDRLTY-SHPLSTVAFSECGTYLCAGNSK--------GELIAYDMRSTKAPVAVRSAHDASVTRVAFQP 303 (673)
T ss_pred ccccceeee-cCCcceeeecCCceEEEeecCC--------ceEEEEecccCCCCceEeeecccceeEEEeee
Confidence 777666653 3478899999999999987665 9999999996 578999999999998887754
No 134
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.35 E-value=3.2e-11 Score=133.92 Aligned_cols=176 Identities=18% Similarity=0.215 Sum_probs=131.0
Q ss_pred cCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCC
Q 000743 324 HKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAK 403 (1313)
Q Consensus 324 ~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pD 403 (1313)
.|..++.++.+.++.. +++|+-||.|+.++.+ . .....+..|...|.|+.+.+
T Consensus 52 ~~~~plL~c~F~d~~~-----~~~G~~dg~vr~~Dln--~--------------~~~~~igth~~~i~ci~~~~------ 104 (323)
T KOG1036|consen 52 KHGAPLLDCAFADEST-----IVTGGLDGQVRRYDLN--T--------------GNEDQIGTHDEGIRCIEYSY------ 104 (323)
T ss_pred ecCCceeeeeccCCce-----EEEeccCceEEEEEec--C--------------CcceeeccCCCceEEEEeec------
Confidence 4667777766665444 9999999999995443 1 23455678999999999986
Q ss_pred CCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCc------
Q 000743 404 GWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR------ 477 (1313)
Q Consensus 404 Gr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~------ 477 (1313)
....++|||+|++|++||.+...+..++. ....|.++... ++.|+.|+.|..|.+||+++..
T Consensus 105 ---~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~--------g~~LvVg~~~r~v~iyDLRn~~~~~q~r 172 (323)
T KOG1036|consen 105 ---EVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS--------GNRLVVGTSDRKVLIYDLRNLDEPFQRR 172 (323)
T ss_pred ---cCCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc--------CCEEEEeecCceEEEEEcccccchhhhc
Confidence 23589999999999999999755555554 34467777664 3467777777888888876531
Q ss_pred ---------E---------------------------------EEEecCCCC---------CcEEEEEcCCCCEEEEEec
Q 000743 478 ---------V---------------------------------ERMFPGHPN---------YPAKVVWDCPRGYIACLCR 506 (1313)
Q Consensus 478 ---------~---------------------------------l~~l~gH~~---------~V~sVafsPdg~~Latgs~ 506 (1313)
+ .+.|+.|.. +|++++|||-...++||+.
T Consensus 173 eS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGs 252 (323)
T KOG1036|consen 173 ESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGS 252 (323)
T ss_pred cccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCC
Confidence 1 123445532 5889999999999999776
Q ss_pred CCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEeeec
Q 000743 507 DHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCK 546 (1313)
Q Consensus 507 DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~ 546 (1313)
| |.|.+||..+.+.+..+.+-...|....||.
T Consensus 253 D--------G~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~ 284 (323)
T KOG1036|consen 253 D--------GIVNIWDLFNRKRLKQLAKYETSISSLSFSM 284 (323)
T ss_pred C--------ceEEEccCcchhhhhhccCCCCceEEEEecc
Confidence 6 9999999999999999988877776666765
No 135
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.35 E-value=1.7e-11 Score=136.76 Aligned_cols=101 Identities=28% Similarity=0.396 Sum_probs=90.2
Q ss_pred EEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEE
Q 000743 345 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 424 (1313)
Q Consensus 345 LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWD 424 (1313)
++.|+.-|.|+| .| +.++++...+.||.+.|+.+.++|. ..++++|||.|.+||+|+
T Consensus 108 la~~G~~GvIrV--id-------------~~~~~~~~~~~ghG~sINeik~~p~--------~~qlvls~SkD~svRlwn 164 (385)
T KOG1034|consen 108 LAAGGYLGVIRV--ID-------------VVSGQCSKNYRGHGGSINEIKFHPD--------RPQLVLSASKDHSVRLWN 164 (385)
T ss_pred EEeecceeEEEE--Ee-------------cchhhhccceeccCccchhhhcCCC--------CCcEEEEecCCceEEEEe
Confidence 677778899999 43 3556889999999999999999972 358999999999999999
Q ss_pred CCCCceEEEE---eccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECC
Q 000743 425 LGSGNLITVM---HHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE 474 (1313)
Q Consensus 425 l~tg~~l~t~---~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~ 474 (1313)
+.+..|+..| .||.+.|.++.|+++ |..|+|+|.|+++++|++.
T Consensus 165 I~~~~Cv~VfGG~egHrdeVLSvD~~~~------gd~i~ScGmDhslk~W~l~ 211 (385)
T KOG1034|consen 165 IQTDVCVAVFGGVEGHRDEVLSVDFSLD------GDRIASCGMDHSLKLWRLN 211 (385)
T ss_pred ccCCeEEEEecccccccCcEEEEEEcCC------CCeeeccCCcceEEEEecC
Confidence 9999999887 569999999999999 7999999999999999997
No 136
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=1.1e-10 Score=143.52 Aligned_cols=202 Identities=20% Similarity=0.236 Sum_probs=154.6
Q ss_pred CCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCC
Q 000743 325 KEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKG 404 (1313)
Q Consensus 325 H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDG 404 (1313)
+...|.++.. ....+++|+.+++|.++.++- ++....|..-+-++++++|+ .+|
T Consensus 55 ~g~~v~~ia~------~s~~f~~~s~~~tv~~y~fps---------------~~~~~iL~Rftlp~r~~~v~-----g~g 108 (933)
T KOG1274|consen 55 SGELVSSIAC------YSNHFLTGSEQNTVLRYKFPS---------------GEEDTILARFTLPIRDLAVS-----GSG 108 (933)
T ss_pred cCceeEEEee------cccceEEeeccceEEEeeCCC---------------CCccceeeeeeccceEEEEe-----cCC
Confidence 5566666321 112589999999999987752 12222333445568899997 455
Q ss_pred CccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecC
Q 000743 405 WSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPG 484 (1313)
Q Consensus 405 r~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~g 484 (1313)
.+++.||.|-.|++-+..+.....++.+|.++|.++.|+|. ++++++.+.||+|++||+.++.+..++.+
T Consensus 109 ----~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~------~~fLAvss~dG~v~iw~~~~~~~~~tl~~ 178 (933)
T KOG1274|consen 109 ----KMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPK------GNFLAVSSCDGKVQIWDLQDGILSKTLTG 178 (933)
T ss_pred ----cEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCC------CCEEEEEecCceEEEEEcccchhhhhccc
Confidence 89999999999999999999999999999999999999999 79999999999999999999988776653
Q ss_pred C--------CCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeC--CCCceeEEeeecccccceee
Q 000743 485 H--------PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG--TASHSMFDHFCKGISMNSIS 554 (1313)
Q Consensus 485 H--------~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~G--H~a~Vi~~~~c~~~s~~ivS 554 (1313)
- ...+..++|+|++..++.-+.| ++|++|+..+++....+.+ |...+...+|.+
T Consensus 179 v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d--------~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP-------- 242 (933)
T KOG1274|consen 179 VDKDNEFILSRICTRLAWHPKGGTLAVPPVD--------NTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP-------- 242 (933)
T ss_pred CCccccccccceeeeeeecCCCCeEEeeccC--------CeEEEEccCCceeheeecccccccceEEEEEcC--------
Confidence 2 2235689999998777776665 9999999999998888864 333344444543
Q ss_pred cccccCCcccccCcccccCCCcEEEEeCCcccc
Q 000743 555 GSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDER 587 (1313)
Q Consensus 555 GS~l~g~~l~S~~lvs~s~DgtIr~Wdl~~~~~ 587 (1313)
+|.+++++.+ |+.|-+||...++.
T Consensus 243 ----nG~YiAAs~~-----~g~I~vWnv~t~~~ 266 (933)
T KOG1274|consen 243 ----NGKYIAASTL-----DGQILVWNVDTHER 266 (933)
T ss_pred ----CCcEEeeecc-----CCcEEEEecccchh
Confidence 3446666655 99999999986443
No 137
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=2.9e-12 Score=160.50 Aligned_cols=213 Identities=17% Similarity=0.226 Sum_probs=162.3
Q ss_pred CceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEec
Q 000743 318 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 397 (1313)
Q Consensus 318 ~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP 397 (1313)
.+.++..|.+.|.. ++-+.|.++.+++|+.||+|.| ||+.... .... .+ -..-.+.|.+|+|+
T Consensus 108 ~la~~~~h~G~V~g---LDfN~~q~nlLASGa~~geI~i--WDlnn~~-tP~~-----~~-----~~~~~~eI~~lsWN- 170 (1049)
T KOG0307|consen 108 VLATKSKHTGPVLG---LDFNPFQGNLLASGADDGEILI--WDLNKPE-TPFT-----PG-----SQAPPSEIKCLSWN- 170 (1049)
T ss_pred HHhhhcccCCceee---eeccccCCceeeccCCCCcEEE--eccCCcC-CCCC-----CC-----CCCCcccceEeccc-
Confidence 45677889999999 4445555567999999999999 7653321 1100 00 11235679999998
Q ss_pred cccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCC--CEEEEEECCCCCCCCCCCEEEEEeCCC---eEEEEE
Q 000743 398 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVA--PVRQIILSPPQTEHPWSDCFLSVGEDF---SVALAS 472 (1313)
Q Consensus 398 ~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~--~V~sV~fsPd~~~~~~g~~LaSgS~Dg---tV~LWD 472 (1313)
+...+.|+||+.++.+-|||++..+++-.+..|.+ .+..+.|||++. ..++.+++|. .|.+||
T Consensus 171 -------rkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~a-----Tql~~As~dd~~PviqlWD 238 (1049)
T KOG0307|consen 171 -------RKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHA-----TQLLVASGDDSAPVIQLWD 238 (1049)
T ss_pred -------hhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCc-----eeeeeecCCCCCceeEeec
Confidence 45678999999999999999999998888887766 477999999963 5566666553 699999
Q ss_pred CCCC-cEEEEecCCCCCcEEEEEcCCC-CEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEeeeccccc
Q 000743 473 LETL-RVERMFPGHPNYPAKVVWDCPR-GYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISM 550 (1313)
Q Consensus 473 L~t~-~~l~~l~gH~~~V~sVafsPdg-~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~~~s~ 550 (1313)
+|.- .+++.+.+|...|.++.|++.+ .+|++++.| +.|.+|+.+||+.+..+....+....++||+....
T Consensus 239 lR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD--------~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~ 310 (1049)
T KOG0307|consen 239 LRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKD--------NRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPS 310 (1049)
T ss_pred ccccCCchhhhcccccceeeeccCCCCchhhhcccCC--------CCeeEecCCCceEeeecCCCCcceeeeeecCCCcc
Confidence 9854 5678889999999999999988 788887776 99999999999999999988888888999985432
Q ss_pred ceeecccccCCcccccCcccccCCCcEEEEeCC
Q 000743 551 NSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 583 (1313)
Q Consensus 551 ~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~ 583 (1313)
.+ +..++ ||.|-+..+.
T Consensus 311 -~~----------A~asf-----dgkI~I~sl~ 327 (1049)
T KOG0307|consen 311 -VM----------AAASF-----DGKISIYSLQ 327 (1049)
T ss_pred -hh----------hhhee-----ccceeeeeee
Confidence 11 12222 7888888774
No 138
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.33 E-value=7.3e-12 Score=147.42 Aligned_cols=162 Identities=19% Similarity=0.280 Sum_probs=130.3
Q ss_pred ccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCC
Q 000743 338 SFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD 417 (1313)
Q Consensus 338 ~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~D 417 (1313)
..|.+.+|+.++.||.|++ |.+...+. .-....+...|.+|...|+++.|||- ..+.|++++.|
T Consensus 636 dPFD~~rLAVa~ddg~i~l--Wr~~a~gl------~e~~~tPe~~lt~h~eKI~slRfHPL--------AadvLa~asyd 699 (1012)
T KOG1445|consen 636 DPFDDERLAVATDDGQINL--WRLTANGL------PENEMTPEKILTIHGEKITSLRFHPL--------AADVLAVASYD 699 (1012)
T ss_pred CCCChHHeeecccCceEEE--EEeccCCC------CcccCCcceeeecccceEEEEEecch--------hhhHhhhhhcc
Confidence 3455558999999999999 65433321 11233577889999999999999982 34789999999
Q ss_pred CcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCc-EEEEecCCCC-CcEEEEEc
Q 000743 418 CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR-VERMFPGHPN-YPAKVVWD 495 (1313)
Q Consensus 418 gtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~-~l~~l~gH~~-~V~sVafs 495 (1313)
.||++||+.+++...+|.+|++.|..++|+|+ |+.+++++.|+++++|..+.++ +++.-.+..+ .--.|.|-
T Consensus 700 ~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpd------Gr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wa 773 (1012)
T KOG1445|consen 700 STIELWDLANAKLYSRLVGHTDQIFGIAWSPD------GRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWA 773 (1012)
T ss_pred ceeeeeehhhhhhhheeccCcCceeEEEECCC------CcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEE
Confidence 99999999999999999999999999999999 8999999999999999998764 3443333222 23478899
Q ss_pred CCCCEEEEEecCCCCCCCCCCEEEEEECCC
Q 000743 496 CPRGYIACLCRDHSRTSDAVDVLFIWDVKT 525 (1313)
Q Consensus 496 Pdg~~Latgs~DlsGssD~DgtIrVWDlrT 525 (1313)
-+|+++++.+.| ..+. ..|.+||..+
T Consensus 774 cdgr~viv~Gfd--k~Se--RQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 774 CDGRIVIVVGFD--KSSE--RQVQMYDAQT 799 (1012)
T ss_pred ecCcEEEEeccc--ccch--hhhhhhhhhh
Confidence 999999999998 5554 7899999876
No 139
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.33 E-value=1e-10 Score=143.92 Aligned_cols=144 Identities=21% Similarity=0.335 Sum_probs=121.9
Q ss_pred EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEE
Q 000743 344 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 423 (1313)
Q Consensus 344 ~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVW 423 (1313)
.++.|+.|-.|++..- .+....+.++||.++|.+|.|+| +| ++|++.+.||+|++|
T Consensus 110 ~iaagsdD~~vK~~~~---------------~D~s~~~~lrgh~apVl~l~~~p-----~~----~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 110 MIAAGSDDTAVKLLNL---------------DDSSQEKVLRGHDAPVLQLSYDP-----KG----NFLAVSSCDGKVQIW 165 (933)
T ss_pred EEEeecCceeEEEEec---------------cccchheeecccCCceeeeeEcC-----CC----CEEEEEecCceEEEE
Confidence 5999999999999433 33356789999999999999995 44 899999999999999
Q ss_pred ECCCCceEEEEecc--------CCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecC--CCCCcEEEE
Q 000743 424 DLGSGNLITVMHHH--------VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPG--HPNYPAKVV 493 (1313)
Q Consensus 424 Dl~tg~~l~t~~gH--------~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~g--H~~~V~sVa 493 (1313)
|+.++.+.+++.+- ...+..++|+|+ |..++..+.|++|++|+...+.....+.. |...+.++.
T Consensus 166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk------~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~ 239 (933)
T KOG1274|consen 166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPK------GGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQ 239 (933)
T ss_pred EcccchhhhhcccCCccccccccceeeeeeecCC------CCeEEeeccCCeEEEEccCCceeheeecccccccceEEEE
Confidence 99999887776542 456788999999 57788889999999999999988887754 333478999
Q ss_pred EcCCCCEEEEEecCCCCCCCCCCEEEEEECCC
Q 000743 494 WDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 525 (1313)
Q Consensus 494 fsPdg~~Latgs~DlsGssD~DgtIrVWDlrT 525 (1313)
|+|.|.||+++..| |.|-|||.++
T Consensus 240 wsPnG~YiAAs~~~--------g~I~vWnv~t 263 (933)
T KOG1274|consen 240 WSPNGKYIAASTLD--------GQILVWNVDT 263 (933)
T ss_pred EcCCCcEEeeeccC--------CcEEEEeccc
Confidence 99999999998777 9999999997
No 140
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.32 E-value=1.8e-10 Score=138.16 Aligned_cols=167 Identities=20% Similarity=0.205 Sum_probs=137.2
Q ss_pred cccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCC-ccEEEEEEecccc
Q 000743 322 FVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHT-GAVLCLAAHRMVG 400 (1313)
Q Consensus 322 ~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~-~~V~sLafsP~~s 400 (1313)
+...+.+|+|+.|..... .++.+..||.|.+ |++... | -+...+.||. +.|-+++|.+
T Consensus 21 ~d~~Ps~I~slA~s~kS~----~lAvsRt~g~IEi--wN~~~~-------w-----~~~~vi~g~~drsIE~L~W~e--- 79 (691)
T KOG2048|consen 21 VDYKPSEIVSLAYSHKSN----QLAVSRTDGNIEI--WNLSNN-------W-----FLEPVIHGPEDRSIESLAWAE--- 79 (691)
T ss_pred EeeeccceEEEEEeccCC----ceeeeccCCcEEE--EccCCC-------c-----eeeEEEecCCCCceeeEEEcc---
Confidence 344567788866665554 5999999999999 654321 2 4466777775 6799999973
Q ss_pred CCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEE
Q 000743 401 TAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVER 480 (1313)
Q Consensus 401 ~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~ 480 (1313)
| ..|+|.+.+|+|.-||+.+++++..+..-.+.|++++.+|. +..++-|++||.+..++...++..+
T Consensus 80 ---~----~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~------~~~l~IgcddGvl~~~s~~p~~I~~ 146 (691)
T KOG2048|consen 80 ---G----GRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPE------NTILAIGCDDGVLYDFSIGPDKITY 146 (691)
T ss_pred ---C----CeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCc------cceEEeecCCceEEEEecCCceEEE
Confidence 2 68999999999999999999999999999999999999999 5788889999988888887766543
Q ss_pred --EecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEE
Q 000743 481 --MFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 530 (1313)
Q Consensus 481 --~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~ 530 (1313)
.+...++.+.+++|+|++..|++||.| |.|++||..+++.+.
T Consensus 147 ~r~l~rq~sRvLslsw~~~~~~i~~Gs~D--------g~Iriwd~~~~~t~~ 190 (691)
T KOG2048|consen 147 KRSLMRQKSRVLSLSWNPTGTKIAGGSID--------GVIRIWDVKSGQTLH 190 (691)
T ss_pred EeecccccceEEEEEecCCccEEEecccC--------ceEEEEEcCCCceEE
Confidence 455667899999999999999997776 999999999998766
No 141
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=9.6e-11 Score=126.28 Aligned_cols=194 Identities=12% Similarity=0.024 Sum_probs=134.1
Q ss_pred CCceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEe
Q 000743 317 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAH 396 (1313)
Q Consensus 317 ~~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafs 396 (1313)
..+..++.|.++++. ..|+.+-+++ +.||.|+-|.|.-..........|.... +.++=.----.|+++-..
T Consensus 53 ~~iv~eqahdgpiy~------~~f~d~~Lls-~gdG~V~gw~W~E~~es~~~K~lwe~~~--P~~~~~~evPeINam~ld 123 (325)
T KOG0649|consen 53 LKIVPEQAHDGPIYY------LAFHDDFLLS-GGDGLVYGWEWNEEEESLATKRLWEVKI--PMQVDAVEVPEINAMWLD 123 (325)
T ss_pred cceeeccccCCCeee------eeeehhheee-ccCceEEEeeehhhhhhccchhhhhhcC--ccccCcccCCccceeEec
Confidence 456677899999998 4444333555 4679999999964333222233454432 222101112357888777
Q ss_pred ccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCC
Q 000743 397 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL 476 (1313)
Q Consensus 397 P~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~ 476 (1313)
| . .+-++.++.|+.+.-||+++|+..++++||++.|.++.--.. ...++||++||++|+||++++
T Consensus 124 P----~-----enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~------~~qilsG~EDGtvRvWd~kt~ 188 (325)
T KOG0649|consen 124 P----S-----ENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA------NGQILSGAEDGTVRVWDTKTQ 188 (325)
T ss_pred c----C-----CCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc------CcceeecCCCccEEEEecccc
Confidence 6 1 234555668999999999999999999999999999987433 357999999999999999999
Q ss_pred cEEEEecCCCCC--------cEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEE--eCCCCceeEEe
Q 000743 477 RVERMFPGHPNY--------PAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL--RGTASHSMFDH 543 (1313)
Q Consensus 477 ~~l~~l~gH~~~--------V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L--~GH~a~Vi~~~ 543 (1313)
+++.++.....+ -+-.+..-+.+++++|+- ..+.+|.+++.++..++ .+|...|+...
T Consensus 189 k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG---------p~lslwhLrsse~t~vfpipa~v~~v~F~~ 256 (325)
T KOG0649|consen 189 KHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG---------PKLSLWHLRSSESTCVFPIPARVHLVDFVD 256 (325)
T ss_pred ceeEEeccccChhhcCcccCceeEEEeccCceEEecCC---------CceeEEeccCCCceEEEecccceeEeeeec
Confidence 999887533211 112344456779998653 58999999998766554 57776665543
No 142
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.30 E-value=1.9e-11 Score=145.17 Aligned_cols=153 Identities=22% Similarity=0.243 Sum_probs=114.6
Q ss_pred EEEEEEcCCcEEEEEeeccccCCCCCCccccC-CceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEE
Q 000743 344 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVN-SHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRI 422 (1313)
Q Consensus 344 ~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~-tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrV 422 (1313)
.|+.+-+||.|.+ ++.... ..+ .....+....|.+.|..+.|-| | +..|++++.|.++++
T Consensus 66 iLavadE~G~i~l--~dt~~~--------~fr~ee~~lk~~~aH~nAifDl~wap------g---e~~lVsasGDsT~r~ 126 (720)
T KOG0321|consen 66 ILAVADEDGGIIL--FDTKSI--------VFRLEERQLKKPLAHKNAIFDLKWAP------G---ESLLVSASGDSTIRP 126 (720)
T ss_pred eEEEecCCCceee--ecchhh--------hcchhhhhhcccccccceeEeeccCC------C---ceeEEEccCCceeee
Confidence 4889999999999 543111 111 1123456678999999999985 3 578999999999999
Q ss_pred EECCCCceEEE--EeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCc-------EEE-------------
Q 000743 423 WDLGSGNLITV--MHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR-------VER------------- 480 (1313)
Q Consensus 423 WDl~tg~~l~t--~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~-------~l~------------- 480 (1313)
||+.++++... +.||.+.|.+++|.|.+ ...|++|+.|+.|.|||++... +..
T Consensus 127 Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n-----~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpsk 201 (720)
T KOG0321|consen 127 WDVKTSRLVGGRLNLGHTGSVKSECFMPTN-----PAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSK 201 (720)
T ss_pred eeeccceeecceeecccccccchhhhccCC-----CcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCc
Confidence 99999998887 99999999999999986 3689999999999999997542 000
Q ss_pred -------EecCCCCCcEE---EEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCc
Q 000743 481 -------MFPGHPNYPAK---VVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 527 (1313)
Q Consensus 481 -------~l~gH~~~V~s---VafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~ 527 (1313)
.-..|...+.. +.+..|+..|++++. . |+.|+|||+++..
T Consensus 202 p~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga-----~--D~~iKVWDLRk~~ 251 (720)
T KOG0321|consen 202 PLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGA-----A--DSTIKVWDLRKNY 251 (720)
T ss_pred hhhccccccccccCceeeeeEEEEEeccceeeeccC-----C--CcceEEEeecccc
Confidence 11122333433 556678888988654 2 3999999999743
No 143
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.29 E-value=6.1e-11 Score=130.50 Aligned_cols=213 Identities=19% Similarity=0.209 Sum_probs=158.4
Q ss_pred ccCCceEEEEeeeeccc-ccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEE-----EecCCccEEEEEEe
Q 000743 323 VHKEKIVSSSMVISESF-YAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQY-----FLGHTGAVLCLAAH 396 (1313)
Q Consensus 323 ~~H~~~Vts~l~is~~~-fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~-----L~GH~~~V~sLafs 396 (1313)
..|.-+++.++++++.. -.|+.|++ .+..+|+ |...... +. + .+... -..|..++++..|+
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLAT--s~D~LRl--Wri~~ee-~~-----~---~~~~~L~~~kns~~~aPlTSFDWn 159 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLAT--SSDFLRL--WRIGDEE-SR-----V---ELQSVLNNNKNSEFCAPLTSFDWN 159 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhc--ccCeEEE--EeccCcC-Cc-----e---ehhhhhccCcccccCCcccccccc
Confidence 46888999988888764 34555554 5678899 5432110 00 0 11111 13456789999998
Q ss_pred ccccCCCCCccCcEEEEEeCCCcEEEEECCCCc---eEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEEC
Q 000743 397 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN---LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASL 473 (1313)
Q Consensus 397 P~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~---~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL 473 (1313)
. .+.+++.+.|-|-|..|||+.++. ....+-.|..+|..|+|...+ -+.|+|+|.||+||++|+
T Consensus 160 e--------~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s-----~~~FASvgaDGSvRmFDL 226 (364)
T KOG0290|consen 160 E--------VDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGS-----RDVFASVGADGSVRMFDL 226 (364)
T ss_pred c--------CCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCc-----cceEEEecCCCcEEEEEe
Confidence 3 356899999999999999999873 466778899999999999864 379999999999999999
Q ss_pred CCCcEEEEe---cCCCCCcEEEEEcCCC-CEEEEEecCCCCCCCCCCEEEEEECCCC-cEEEEEeCCCCceeEEeeeccc
Q 000743 474 ETLRVERMF---PGHPNYPAKVVWDCPR-GYIACLCRDHSRTSDAVDVLFIWDVKTG-ARERVLRGTASHSMFDHFCKGI 548 (1313)
Q Consensus 474 ~t~~~l~~l---~gH~~~V~sVafsPdg-~~Latgs~DlsGssD~DgtIrVWDlrTG-~lv~~L~GH~a~Vi~~~~c~~~ 548 (1313)
|..+.-..+ +....+...++|++.+ +|++|-..| ...|.|-|+|.. ..+..+++|++.|..+.|.+..
T Consensus 227 R~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~d-------S~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS 299 (364)
T KOG0290|consen 227 RSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMD-------SNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHS 299 (364)
T ss_pred cccccceEEecCCCCCCcceeeccCcCCchHHhhhhcC-------CceEEEEEecCCCcceehhhcCcccccceEecCCC
Confidence 977543322 2223467899999866 577876665 268999999984 6789999999999999998766
Q ss_pred ccceeecccccCCcccccCcccccCCCcEEEEeCCc
Q 000743 549 SMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 584 (1313)
Q Consensus 549 s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~~ 584 (1313)
...++++.. |..+.+||+..
T Consensus 300 ~~hictaGD----------------D~qaliWDl~q 319 (364)
T KOG0290|consen 300 SSHICTAGD----------------DCQALIWDLQQ 319 (364)
T ss_pred CceeeecCC----------------cceEEEEeccc
Confidence 666666654 88999999974
No 144
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.29 E-value=4.4e-11 Score=138.47 Aligned_cols=170 Identities=19% Similarity=0.269 Sum_probs=135.9
Q ss_pred EEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEE
Q 000743 345 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 424 (1313)
Q Consensus 345 LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWD 424 (1313)
.++++.||.|.| ||+ .....++.|+||++.+.|+..+ +|| ..|-||+-|.+||.||
T Consensus 524 cFsccsdGnI~v--wDL-------------hnq~~VrqfqGhtDGascIdis-----~dG----tklWTGGlDntvRcWD 579 (705)
T KOG0639|consen 524 CFSCCSDGNIAV--WDL-------------HNQTLVRQFQGHTDGASCIDIS-----KDG----TKLWTGGLDNTVRCWD 579 (705)
T ss_pred eeeeccCCcEEE--EEc-------------ccceeeecccCCCCCceeEEec-----CCC----ceeecCCCccceeehh
Confidence 556778999999 654 3446789999999999999998 577 8899999999999999
Q ss_pred CCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEE
Q 000743 425 LGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACL 504 (1313)
Q Consensus 425 l~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latg 504 (1313)
++++..+.... ..+.|.++-..|. ++.++.|...+.|-+.... +...+.+.-|.+-|.++.|.+.|+++++.
T Consensus 580 lregrqlqqhd-F~SQIfSLg~cP~------~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwfvSt 651 (705)
T KOG0639|consen 580 LREGRQLQQHD-FSSQIFSLGYCPT------GDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWFVST 651 (705)
T ss_pred hhhhhhhhhhh-hhhhheecccCCC------ccceeeecccCcEEEEecC-CccceeecccccEEEEEEecccCceeeec
Confidence 99998766554 5678999999998 7899999999999888864 45567788899999999999999999998
Q ss_pred ecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEeeecccccceeecc
Q 000743 505 CRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGS 556 (1313)
Q Consensus 505 s~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS 556 (1313)
+.| +-+..|.+--|..+.....- ..|+++..+. ....++|||
T Consensus 652 GkD--------nlLnawrtPyGasiFqskE~-SsVlsCDIS~-ddkyIVTGS 693 (705)
T KOG0639|consen 652 GKD--------NLLNAWRTPYGASIFQSKES-SSVLSCDISF-DDKYIVTGS 693 (705)
T ss_pred Cch--------hhhhhccCccccceeecccc-Ccceeeeecc-CceEEEecC
Confidence 887 89999998888877665443 3454432221 122377876
No 145
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.28 E-value=1.2e-10 Score=128.87 Aligned_cols=183 Identities=15% Similarity=0.162 Sum_probs=140.1
Q ss_pred ecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEecccc
Q 000743 321 DFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVG 400 (1313)
Q Consensus 321 ~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s 400 (1313)
....|.++|-++.+..+.. ++++|+.|+.+++ ||+ .++ .......|.++|.++.|-+.
T Consensus 67 a~~~~~~PvL~v~Wsddgs----kVf~g~~Dk~~k~--wDL-------------~S~-Q~~~v~~Hd~pvkt~~wv~~-- 124 (347)
T KOG0647|consen 67 AQQSHDGPVLDVCWSDDGS----KVFSGGCDKQAKL--WDL-------------ASG-QVSQVAAHDAPVKTCHWVPG-- 124 (347)
T ss_pred hhhccCCCeEEEEEccCCc----eEEeeccCCceEE--EEc-------------cCC-CeeeeeecccceeEEEEecC--
Confidence 4557889999977776665 7999999999999 664 344 35677899999999999751
Q ss_pred CCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEe-------------------------------------ccCC----
Q 000743 401 TAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMH-------------------------------------HHVA---- 439 (1313)
Q Consensus 401 ~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~-------------------------------------gH~~---- 439 (1313)
...+.|+|||.|+|+|.||.+...++.++. .+.+
T Consensus 125 -----~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~ 199 (347)
T KOG0647|consen 125 -----MNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKW 199 (347)
T ss_pred -----CCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccc
Confidence 134689999999999999999776655442 1111
Q ss_pred CEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCC--cEEEEecCCCC---------CcEEEEEcCCCCEEEEEecCC
Q 000743 440 PVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL--RVERMFPGHPN---------YPAKVVWDCPRGYIACLCRDH 508 (1313)
Q Consensus 440 ~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~--~~l~~l~gH~~---------~V~sVafsPdg~~Latgs~Dl 508 (1313)
.++||+..++ .+.++-|+-.|.+.+..+..+ +.-.+|+.|.. .|++|+|||....|+|++.|
T Consensus 200 Q~R~va~f~d------~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsD- 272 (347)
T KOG0647|consen 200 QTRCVACFQD------KDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSD- 272 (347)
T ss_pred eeeEEEEEec------CCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCC-
Confidence 3556666666 455677888888888888776 44456777753 36789999999999997766
Q ss_pred CCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEee
Q 000743 509 SRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHF 544 (1313)
Q Consensus 509 sGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~ 544 (1313)
|++..||-.....+++.+-|...+.+..|
T Consensus 273 -------Gtf~FWDkdar~kLk~s~~~~qpItcc~f 301 (347)
T KOG0647|consen 273 -------GTFSFWDKDARTKLKTSETHPQPITCCSF 301 (347)
T ss_pred -------ceEEEecchhhhhhhccCcCCCccceeEe
Confidence 99999998888888888999999877655
No 146
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.28 E-value=1.7e-10 Score=137.68 Aligned_cols=170 Identities=15% Similarity=0.173 Sum_probs=133.3
Q ss_pred CCCceecccCCceEEEEeeeecc-cccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecC----CccE
Q 000743 316 GDGRDDFVHKEKIVSSSMVISES-FYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGH----TGAV 390 (1313)
Q Consensus 316 ~~~~~~~~~H~~~Vts~l~is~~-~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH----~~~V 390 (1313)
...++++.+|...|++..+.... .+ +.++.+.|..|....+.. . .++ ....++| +..+
T Consensus 537 y~l~qtld~HSssITsvKFa~~gln~---~MiscGADksimFr~~qk--~----------~~g--~~f~r~t~t~~ktTl 599 (1080)
T KOG1408|consen 537 YDLVQTLDGHSSSITSVKFACNGLNR---KMISCGADKSIMFRVNQK--A----------SSG--RLFPRHTQTLSKTTL 599 (1080)
T ss_pred cchhhhhcccccceeEEEEeecCCce---EEEeccCchhhheehhcc--c----------cCc--eeccccccccccceE
Confidence 35788999999999996544322 11 477777788776532220 0 011 1111111 2457
Q ss_pred EEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEec---cCCCEEEEEECCCCCCCCCCCEEEEEeCCCe
Q 000743 391 LCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH---HVAPVRQIILSPPQTEHPWSDCFLSVGEDFS 467 (1313)
Q Consensus 391 ~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~g---H~~~V~sV~fsPd~~~~~~g~~LaSgS~Dgt 467 (1313)
++++..| ...++++++.|+.|+|+|+.+|+..+.|++ |.+....+...|. |.++++.+.|++
T Consensus 600 YDm~Vdp---------~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPS------giY~atScsdkt 664 (1080)
T KOG1408|consen 600 YDMAVDP---------TSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPS------GIYLATSCSDKT 664 (1080)
T ss_pred EEeeeCC---------CcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCC------ccEEEEeecCCc
Confidence 8888875 237999999999999999999999999986 6677888999998 799999999999
Q ss_pred EEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCC
Q 000743 468 VALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 525 (1313)
Q Consensus 468 V~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrT 525 (1313)
+.++|.-+++|+..+.||...|+.+.|.+|-+.|++.+.| |.|.||.+..
T Consensus 665 l~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgD--------gCIFvW~lp~ 714 (1080)
T KOG1408|consen 665 LCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGD--------GCIFVWKLPL 714 (1080)
T ss_pred eEEEEeccchhhhhhcCcchheeeeeecccchhheeecCC--------ceEEEEECch
Confidence 9999999999999999999999999999999999986655 9999999853
No 147
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.26 E-value=3.1e-09 Score=123.85 Aligned_cols=187 Identities=14% Similarity=0.131 Sum_probs=133.7
Q ss_pred cCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCcc----------------------------ccC
Q 000743 324 HKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASL----------------------------KVN 375 (1313)
Q Consensus 324 ~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~w----------------------------dv~ 375 (1313)
.|.+.|.++..+-+.. |++|+.|..|.. ||-....-.....+ .++
T Consensus 285 aH~ggv~~L~~lr~Gt-----llSGgKDRki~~--Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~ 357 (626)
T KOG2106|consen 285 AHDGGVFSLCMLRDGT-----LLSGGKDRKIIL--WDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLE 357 (626)
T ss_pred ecCCceEEEEEecCcc-----EeecCccceEEe--ccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeec
Confidence 8999999977776665 888999998888 54211100000000 111
Q ss_pred CceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCC
Q 000743 376 SHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPW 455 (1313)
Q Consensus 376 tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~ 455 (1313)
.+ -..+..||.+..+.++.+| +++++++++.|+.+++|+ ..+++.+-. -..++.++.|+|.
T Consensus 358 ~~-f~~~v~gh~delwgla~hp---------s~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhps------ 418 (626)
T KOG2106|consen 358 NG-FTLTVQGHGDELWGLATHP---------SKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPS------ 418 (626)
T ss_pred CC-ceEEEEecccceeeEEcCC---------ChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCc------
Confidence 11 1233468999999999986 347899999999999999 444444433 4678999999998
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCC-CcEEEEEeC
Q 000743 456 SDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT-GARERVLRG 534 (1313)
Q Consensus 456 g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrT-G~lv~~L~G 534 (1313)
| .++.|...|...+.|.++...+..-.. ..++++++|+|+|.+|+.|+.| +.||||-+.. |.....+.-
T Consensus 419 g-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d--------~~iyiy~Vs~~g~~y~r~~k 488 (626)
T KOG2106|consen 419 G-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHD--------NHIYIYRVSANGRKYSRVGK 488 (626)
T ss_pred c-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCC--------CeEEEEEECCCCcEEEEeee
Confidence 5 899999999999999998555544444 7789999999999999999888 9999998864 554433332
Q ss_pred -CCCceeEEeeec
Q 000743 535 -TASHSMFDHFCK 546 (1313)
Q Consensus 535 -H~a~Vi~~~~c~ 546 (1313)
|.+.++-..|+.
T Consensus 489 ~~gs~ithLDwS~ 501 (626)
T KOG2106|consen 489 CSGSPITHLDWSS 501 (626)
T ss_pred ecCceeEEeeecC
Confidence 225666666653
No 148
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.25 E-value=6e-10 Score=122.64 Aligned_cols=192 Identities=15% Similarity=0.117 Sum_probs=127.9
Q ss_pred CCeeeeeeccccccccccccccccCCCCCCCceecc-cCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCC
Q 000743 288 EGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFV-HKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHN 366 (1313)
Q Consensus 288 dGi~Iwk~~~ss~~~~i~~l~~~~~~~~~~~~~~~~-~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~ 366 (1313)
++..||.+.....++....++ ++..+. .+-+.|.|+.+-|+.. ++++ -.|..|.+ |++.....
T Consensus 93 ~~aaiw~ipe~~~~S~~~tlE---------~v~~Ldteavg~i~cvew~Pns~----klas-m~dn~i~l--~~l~ess~ 156 (370)
T KOG1007|consen 93 TGAAIWQIPEPLGQSNSSTLE---------CVASLDTEAVGKINCVEWEPNSD----KLAS-MDDNNIVL--WSLDESSK 156 (370)
T ss_pred eeEEEEecccccCccccchhh---------HhhcCCHHHhCceeeEEEcCCCC----eeEE-eccCceEE--EEcccCcc
Confidence 355677776554443222222 233333 4556888844444222 4555 34888888 65432210
Q ss_pred CCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEe-ccCCCEEEEE
Q 000743 367 SPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMH-HHVAPVRQII 445 (1313)
Q Consensus 367 ~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~-gH~~~V~sV~ 445 (1313)
. .-++.. ..-.+|+...++-+|+| +.|| +.+++. .|+++..||+++.++...+. .|...|+.+.
T Consensus 157 ~---vaev~s----s~s~e~~~~ftsg~Wsp---HHdg----nqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlD 221 (370)
T KOG1007|consen 157 I---VAEVLS----SESAEMRHSFTSGAWSP---HHDG----NQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLD 221 (370)
T ss_pred h---heeecc----cccccccceecccccCC---CCcc----ceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeecc
Confidence 0 011110 01123566677778997 3566 666654 58999999999988766664 5888999999
Q ss_pred ECCCCCCCCCCCEEEEEeCCCeEEEEECCC-CcEEEEecCCCCCcEEEEEcCCCC-EEEEEecCCCCCCCCCCEEEEEEC
Q 000743 446 LSPPQTEHPWSDCFLSVGEDFSVALASLET-LRVERMFPGHPNYPAKVVWDCPRG-YIACLCRDHSRTSDAVDVLFIWDV 523 (1313)
Q Consensus 446 fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t-~~~l~~l~gH~~~V~sVafsPdg~-~Latgs~DlsGssD~DgtIrVWDl 523 (1313)
|+|+. ..+|+|+++|+.|++||.|. ..+++.+++|...|++|.|+|..+ .|++|+. | ..|.+|.+
T Consensus 222 fNpnk-----q~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~S------D--s~V~Lsca 288 (370)
T KOG1007|consen 222 FNPNK-----QHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGS------D--SAVNLSCA 288 (370)
T ss_pred CCCCc-----eEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCC------C--ceeEEEec
Confidence 99985 47899999999999999985 457899999999999999999665 5555444 4 89999965
No 149
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=2.7e-10 Score=122.82 Aligned_cols=163 Identities=21% Similarity=0.347 Sum_probs=123.6
Q ss_pred EEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEE
Q 000743 345 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 424 (1313)
Q Consensus 345 LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWD 424 (1313)
++.|..+|+|.+...+.+..+.. ..+....+..+++|.++|+.++|+ +.+|+||+. |.|+-|.
T Consensus 25 l~agn~~G~iav~sl~sl~s~sa-----~~~gk~~iv~eqahdgpiy~~~f~-----------d~~Lls~gd-G~V~gw~ 87 (325)
T KOG0649|consen 25 LFAGNLFGDIAVLSLKSLDSGSA-----EPPGKLKIVPEQAHDGPIYYLAFH-----------DDFLLSGGD-GLVYGWE 87 (325)
T ss_pred EEEecCCCeEEEEEehhhhcccc-----CCCCCcceeeccccCCCeeeeeee-----------hhheeeccC-ceEEEee
Confidence 88999999999965543322111 112334566779999999999997 267888875 9999998
Q ss_pred CCCCce------EE--EEeccC-----CCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEE
Q 000743 425 LGSGNL------IT--VMHHHV-----APVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAK 491 (1313)
Q Consensus 425 l~tg~~------l~--t~~gH~-----~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~s 491 (1313)
.+.... +- ....|. -.|+++-..|. .+.++.++.|+.+.-||+++|+..++++||++.+-+
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~------enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~ 161 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPS------ENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHS 161 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccC------CCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeee
Confidence 763221 00 111233 35889999987 356666779999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCc
Q 000743 492 VVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASH 538 (1313)
Q Consensus 492 VafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~ 538 (1313)
+.-......+++|++| |++||||.+|++.++.+.-...+
T Consensus 162 vv~R~~~~qilsG~ED--------GtvRvWd~kt~k~v~~ie~yk~~ 200 (325)
T KOG0649|consen 162 VVGRNANGQILSGAED--------GTVRVWDTKTQKHVSMIEPYKNP 200 (325)
T ss_pred eeecccCcceeecCCC--------ccEEEEeccccceeEEeccccCh
Confidence 9997777788888877 99999999999999988755443
No 150
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.25 E-value=5.1e-11 Score=137.96 Aligned_cols=196 Identities=15% Similarity=0.141 Sum_probs=145.7
Q ss_pred eEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCcc
Q 000743 328 IVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSF 407 (1313)
Q Consensus 328 ~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~ 407 (1313)
-+.++...++.. .|++|+.-.++.| ||+... +......|..-.-...+|+.+| |.
T Consensus 467 yiRSckL~pdgr----tLivGGeastlsi--WDLAap-----------TprikaeltssapaCyALa~sp-----Da--- 521 (705)
T KOG0639|consen 467 YIRSCKLLPDGR----TLIVGGEASTLSI--WDLAAP-----------TPRIKAELTSSAPACYALAISP-----DA--- 521 (705)
T ss_pred ceeeeEecCCCc----eEEeccccceeee--eeccCC-----------CcchhhhcCCcchhhhhhhcCC-----cc---
Confidence 445544444444 5999999889999 876433 1122223333333466777774 44
Q ss_pred CcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC
Q 000743 408 NEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN 487 (1313)
Q Consensus 408 ~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~ 487 (1313)
++.+++..||.|+|||+.+...++.|+||++.+.||.++++ |..|-+|+-|++||-||+++++.++... ..+
T Consensus 522 -kvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~d------GtklWTGGlDntvRcWDlregrqlqqhd-F~S 593 (705)
T KOG0639|consen 522 -KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKD------GTKLWTGGLDNTVRCWDLREGRQLQQHD-FSS 593 (705)
T ss_pred -ceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCC------CceeecCCCccceeehhhhhhhhhhhhh-hhh
Confidence 89999999999999999999999999999999999999999 7889999999999999999998765443 235
Q ss_pred CcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEeeecccccceeecccccCCcccccC
Q 000743 488 YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSL 567 (1313)
Q Consensus 488 ~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~ 567 (1313)
.|.++...|+++++++|=++ +.+.|-.. ++.....+.-|..-|+++.|.. .|.+.
T Consensus 594 QIfSLg~cP~~dWlavGMen--------s~vevlh~-skp~kyqlhlheScVLSlKFa~------------cGkwf---- 648 (705)
T KOG0639|consen 594 QIFSLGYCPTGDWLAVGMEN--------SNVEVLHT-SKPEKYQLHLHESCVLSLKFAY------------CGKWF---- 648 (705)
T ss_pred hheecccCCCccceeeeccc--------CcEEEEec-CCccceeecccccEEEEEEecc------------cCcee----
Confidence 78999999999999998766 67766664 3444566778888888777643 12343
Q ss_pred cccccCCCcEEEEeC
Q 000743 568 LLPIHEDGTFRQSQI 582 (1313)
Q Consensus 568 lvs~s~DgtIr~Wdl 582 (1313)
++...|.-+..|..
T Consensus 649 -vStGkDnlLnawrt 662 (705)
T KOG0639|consen 649 -VSTGKDNLLNAWRT 662 (705)
T ss_pred -eecCchhhhhhccC
Confidence 34445888888874
No 151
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.25 E-value=6e-11 Score=139.86 Aligned_cols=188 Identities=19% Similarity=0.243 Sum_probs=145.1
Q ss_pred CCceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEe
Q 000743 317 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAH 396 (1313)
Q Consensus 317 ~~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafs 396 (1313)
.++.+|.+|.++|-|..+.+... .+++|+.||+|+. |++-...+.. - ..+......+|.||++.|+.+++|
T Consensus 335 epi~tfraH~gPVl~v~v~~n~~----~~ysgg~Dg~I~~--w~~p~n~dp~-d--s~dp~vl~~~l~Ghtdavw~l~~s 405 (577)
T KOG0642|consen 335 EPILTFRAHEGPVLCVVVPSNGE----HCYSGGIDGTIRC--WNLPPNQDPD-D--SYDPSVLSGTLLGHTDAVWLLALS 405 (577)
T ss_pred eeeEEEecccCceEEEEecCCce----EEEeeccCceeee--eccCCCCCcc-c--ccCcchhccceeccccceeeeeec
Confidence 56889999999999966665555 5999999999999 7543221110 0 011223456789999999999998
Q ss_pred ccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEec------------------c---------------------
Q 000743 397 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH------------------H--------------------- 437 (1313)
Q Consensus 397 P~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~g------------------H--------------------- 437 (1313)
+ ..+.|+++|.|||+|.|+.....+ .+|.. |
T Consensus 406 ~---------~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~ 475 (577)
T KOG0642|consen 406 S---------TKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDL 475 (577)
T ss_pred c---------cccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhhe
Confidence 5 336799999999999999764433 11100 0
Q ss_pred -------------CCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEE
Q 000743 438 -------------VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACL 504 (1313)
Q Consensus 438 -------------~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latg 504 (1313)
...++.+.++|. +...+++..|++|+++|..+++.+.....|...++++++.|+|.||++|
T Consensus 476 ~~~~s~~~~~~~~~~~in~vVs~~~------~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~ 549 (577)
T KOG0642|consen 476 LIFESSASPGPRRYPQINKVVSHPT------ADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSG 549 (577)
T ss_pred eeccccCCCcccccCccceEEecCC------CCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEee
Confidence 012444555555 6889999999999999999999999999999999999999999999998
Q ss_pred ecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCC
Q 000743 505 CRDHSRTSDAVDVLFIWDVKTGARERVLRGTAS 537 (1313)
Q Consensus 505 s~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a 537 (1313)
+.| +.+++|.+....++.....|..
T Consensus 550 s~d--------~sv~l~kld~k~~~~es~~~r~ 574 (577)
T KOG0642|consen 550 SHD--------GSVRLWKLDVKTCVLESTAHRK 574 (577)
T ss_pred cCC--------ceeehhhccchheeeccccccc
Confidence 877 9999999998888888887764
No 152
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.24 E-value=1.2e-09 Score=122.43 Aligned_cols=184 Identities=17% Similarity=0.164 Sum_probs=130.3
Q ss_pred EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcE-EEEEeCCCcEEE
Q 000743 344 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEV-LVSGSMDCSIRI 422 (1313)
Q Consensus 344 ~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~-LaSGS~DgtIrV 422 (1313)
.+++++.|+.+++ |++ .+++....+.+|.. +.+++|+| || .. +++++.|+.|++
T Consensus 3 ~~~s~~~d~~v~~--~d~-------------~t~~~~~~~~~~~~-~~~l~~~~-----dg----~~l~~~~~~~~~v~~ 57 (300)
T TIGR03866 3 AYVSNEKDNTISV--IDT-------------ATLEVTRTFPVGQR-PRGITLSK-----DG----KLLYVCASDSDTIQV 57 (300)
T ss_pred EEEEecCCCEEEE--EEC-------------CCCceEEEEECCCC-CCceEECC-----CC----CEEEEEECCCCeEEE
Confidence 4678888999998 643 45567778877654 67899984 55 44 477889999999
Q ss_pred EECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEE-EEEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEE
Q 000743 423 WDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCF-LSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYI 501 (1313)
Q Consensus 423 WDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~L-aSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~L 501 (1313)
||..+++.+..+..+.. +..+.|+|+ ++.+ ++++.|+.+++||+++++.+..+..+ ..+..++|+|++.++
T Consensus 58 ~d~~~~~~~~~~~~~~~-~~~~~~~~~------g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l 129 (300)
T TIGR03866 58 IDLATGEVIGTLPSGPD-PELFALHPN------GKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIV 129 (300)
T ss_pred EECCCCcEEEeccCCCC-ccEEEECCC------CCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEE
Confidence 99999998888775544 567899998 5655 55567899999999998888777643 356889999999999
Q ss_pred EEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEeeecccccceeecccccCCcccccCcccccCCCcEEEEe
Q 000743 502 ACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 581 (1313)
Q Consensus 502 atgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wd 581 (1313)
+++..+ +..+++||.++++.+..+.... ......|.+ +|. .+ ++....|+++++|+
T Consensus 130 ~~~~~~-------~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~s~-------dg~-----~l----~~~~~~~~~v~i~d 185 (300)
T TIGR03866 130 VNTSET-------TNMAHFIDTKTYEIVDNVLVDQ-RPRFAEFTA-------DGK-----EL----WVSSEIGGTVSVID 185 (300)
T ss_pred EEEecC-------CCeEEEEeCCCCeEEEEEEcCC-CccEEEECC-------CCC-----EE----EEEcCCCCEEEEEE
Confidence 986554 2468889999988766543222 122222322 111 11 11223488999999
Q ss_pred CCc
Q 000743 582 IQN 584 (1313)
Q Consensus 582 l~~ 584 (1313)
++.
T Consensus 186 ~~~ 188 (300)
T TIGR03866 186 VAT 188 (300)
T ss_pred cCc
Confidence 874
No 153
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.24 E-value=1.1e-10 Score=134.80 Aligned_cols=210 Identities=16% Similarity=0.100 Sum_probs=151.2
Q ss_pred CceecccCCceEEEEeeeecccccCC----EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEE
Q 000743 318 GRDDFVHKEKIVSSSMVISESFYAPY----AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCL 393 (1313)
Q Consensus 318 ~~~~~~~H~~~Vts~l~is~~~fsP~----~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sL 393 (1313)
......-+...|++ ..|+|. .++.|...|.|-+ |++... .+...-+..+..|.++|.++
T Consensus 178 ~~~v~kv~~~Rit~------l~fHPt~~~~lva~GdK~G~VG~--Wn~~~~---------~~d~d~v~~f~~hs~~Vs~l 240 (498)
T KOG4328|consen 178 ILNVAKVTDRRITS------LAFHPTENRKLVAVGDKGGQVGL--WNFGTQ---------EKDKDGVYLFTPHSGPVSGL 240 (498)
T ss_pred ecceeEecccceEE------EEecccCcceEEEEccCCCcEEE--EecCCC---------CCccCceEEeccCCccccce
Confidence 34566778889999 566665 3778888899999 554211 11223466788999999999
Q ss_pred EEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEE--EEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEE
Q 000743 394 AAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLIT--VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALA 471 (1313)
Q Consensus 394 afsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~--t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LW 471 (1313)
.|+|. +...+++.|.||+||+-|++.+..-. +...-.....++.|+.+ ...++.+..=|...+|
T Consensus 241 ~F~P~--------n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e------~~~vl~~~~~G~f~~i 306 (498)
T KOG4328|consen 241 KFSPA--------NTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAE------SRSVLFGDNVGNFNVI 306 (498)
T ss_pred EecCC--------ChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCC------CccEEEeecccceEEE
Confidence 99982 34689999999999999998765333 33324446677888777 3566677766789999
Q ss_pred ECCCCcE-EEEecCCCCCcEEEEEcCCCC-EEEEEecCCCCCCCCCCEEEEEECCCC--c--EEEEEeCCCCceeEEeee
Q 000743 472 SLETLRV-ERMFPGHPNYPAKVVWDCPRG-YIACLCRDHSRTSDAVDVLFIWDVKTG--A--RERVLRGTASHSMFDHFC 545 (1313)
Q Consensus 472 DL~t~~~-l~~l~gH~~~V~sVafsPdg~-~Latgs~DlsGssD~DgtIrVWDlrTG--~--lv~~L~GH~a~Vi~~~~c 545 (1313)
|++++.. ...+.-|...|..++++|..+ +|+|++.| ++.+|||+|.- + +.-....|+-.|.++.|+
T Consensus 307 D~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D--------~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFS 378 (498)
T KOG4328|consen 307 DLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLD--------QTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFS 378 (498)
T ss_pred EeecCCccchhhhhhhcccceeecCCCCchheeecccC--------cceeeeehhhhcCCCCcceecccccceeeeeEEc
Confidence 9998766 566777888999999999776 56776655 99999999862 2 223345788888777776
Q ss_pred cccccceeecccccCCcccccCcccccCCCcEEEEeCC
Q 000743 546 KGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 583 (1313)
Q Consensus 546 ~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~ 583 (1313)
+. |. .++....|.+||+||.+
T Consensus 379 Ps-------~g----------tl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 379 PS-------GG----------TLLTTCQDNEIRVFDSS 399 (498)
T ss_pred CC-------CC----------ceEeeccCCceEEeecc
Confidence 51 11 13445569999999974
No 154
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.22 E-value=2.8e-10 Score=127.20 Aligned_cols=123 Identities=24% Similarity=0.294 Sum_probs=108.0
Q ss_pred CCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCC
Q 000743 386 HTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGED 465 (1313)
Q Consensus 386 H~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~D 465 (1313)
|...-..++|.-. ..+| +.+++.|+.-|.|||-|+.++++...+.+|.+.|+.+.++|+. .++++|+|.|
T Consensus 88 ~~Esfytcsw~yd--~~~~---~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~-----~qlvls~SkD 157 (385)
T KOG1034|consen 88 HDESFYTCSWSYD--SNTG---NPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDR-----PQLVLSASKD 157 (385)
T ss_pred CCcceEEEEEEec--CCCC---CeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCC-----CcEEEEecCC
Confidence 5666677788631 1222 5789999999999999999999999999999999999999995 3799999999
Q ss_pred CeEEEEECCCCcEEEEe---cCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCC
Q 000743 466 FSVALASLETLRVERMF---PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 526 (1313)
Q Consensus 466 gtV~LWDL~t~~~l~~l---~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG 526 (1313)
.+||+||+++..|+..| .||.+.|.++.|+++|++|++++.| .++++|++...
T Consensus 158 ~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmD--------hslk~W~l~~~ 213 (385)
T KOG1034|consen 158 HSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMD--------HSLKLWRLNVK 213 (385)
T ss_pred ceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCc--------ceEEEEecChh
Confidence 99999999999999887 5799999999999999999998887 99999999853
No 155
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.22 E-value=1.6e-09 Score=130.14 Aligned_cols=162 Identities=15% Similarity=0.142 Sum_probs=122.7
Q ss_pred EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEE
Q 000743 344 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 423 (1313)
Q Consensus 344 ~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVW 423 (1313)
.++.|++||.+.. ++. ..+.-+....|.-.+++|.++.|+| +| ..+++|+.||.|++|
T Consensus 124 ~l~IgcddGvl~~--~s~-----------~p~~I~~~r~l~rq~sRvLslsw~~-----~~----~~i~~Gs~Dg~Iriw 181 (691)
T KOG2048|consen 124 ILAIGCDDGVLYD--FSI-----------GPDKITYKRSLMRQKSRVLSLSWNP-----TG----TKIAGGSIDGVIRIW 181 (691)
T ss_pred eEEeecCCceEEE--Eec-----------CCceEEEEeecccccceEEEEEecC-----Cc----cEEEecccCceEEEE
Confidence 4888999995444 431 1111133445666679999999984 55 779999999999999
Q ss_pred ECCCCceEEEEe-------c-cCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEEc
Q 000743 424 DLGSGNLITVMH-------H-HVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWD 495 (1313)
Q Consensus 424 Dl~tg~~l~t~~-------g-H~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafs 495 (1313)
|..++..++... . ..--|++|.|-.+ ..|+||..-|+|++||-..+..++.+..|...|.+++..
T Consensus 182 d~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-------~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~ 254 (691)
T KOG2048|consen 182 DVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-------STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVA 254 (691)
T ss_pred EcCCCceEEEeeecccccccCCceEEEEEEEeec-------CcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEc
Confidence 999998766221 1 2235899999877 679999999999999999999999999999999999999
Q ss_pred CCCCEEEEEecCCCCCCCCCCEEEEEECCCCcE--E--EEEeCCCCceeEE
Q 000743 496 CPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR--E--RVLRGTASHSMFD 542 (1313)
Q Consensus 496 Pdg~~Latgs~DlsGssD~DgtIrVWDlrTG~l--v--~~L~GH~a~Vi~~ 542 (1313)
++++++++++.| ++|.-+...++.. + ....+|...|-+.
T Consensus 255 ~~~d~vfsaGvd--------~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~ 297 (691)
T KOG2048|consen 255 DNEDRVFSAGVD--------PKIIQYSLTTNKSEWVINSRRDLHAHDVRSM 297 (691)
T ss_pred CCCCeEEEccCC--------CceEEEEecCCccceeeeccccCCcccceee
Confidence 999999997776 8888887766533 2 2223565555443
No 156
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.22 E-value=3.9e-09 Score=129.06 Aligned_cols=187 Identities=14% Similarity=0.182 Sum_probs=153.0
Q ss_pred EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEE
Q 000743 344 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 423 (1313)
Q Consensus 344 ~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVW 423 (1313)
+++.|+.+|.+.+ | ++++++.+.+++++...|+++.-+|. -+.++-|..||+|.++
T Consensus 174 KIvvGs~~G~lql--~-------------Nvrt~K~v~~f~~~~s~IT~ieqsPa---------LDVVaiG~~~G~Viif 229 (910)
T KOG1539|consen 174 KIVVGSSQGRLQL--W-------------NVRTGKVVYTFQEFFSRITAIEQSPA---------LDVVAIGLENGTVIIF 229 (910)
T ss_pred eEEEeecCCcEEE--E-------------EeccCcEEEEecccccceeEeccCCc---------ceEEEEeccCceEEEE
Confidence 6999999999999 4 55788999999999999999998873 3789999999999999
Q ss_pred ECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCCcEEEEEcCCCCEEE
Q 000743 424 DLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFP-GHPNYPAKVVWDCPRGYIA 502 (1313)
Q Consensus 424 Dl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~-gH~~~V~sVafsPdg~~La 502 (1313)
+++.++.+.+|+.-.+.|+++.|.-|+ ...+++++..|.+.+||++..+....+. .|.+.|....|-|....++
T Consensus 230 NlK~dkil~sFk~d~g~VtslSFrtDG-----~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ 304 (910)
T KOG1539|consen 230 NLKFDKILMSFKQDWGRVTSLSFRTDG-----NPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLV 304 (910)
T ss_pred EcccCcEEEEEEccccceeEEEeccCC-----CeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEe
Confidence 999999999999446999999999985 2578888888999999999888776554 8888999999999999999
Q ss_pred EEecCCCCCCCCCCEEEEEECCC--C--cEEEEEeCCCCceeEEeeecccccceeecccccCCcccccCcccccCCCcEE
Q 000743 503 CLCRDHSRTSDAVDVLFIWDVKT--G--ARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFR 578 (1313)
Q Consensus 503 tgs~DlsGssD~DgtIrVWDlrT--G--~lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr 578 (1313)
+.+.| +++++|=..+ | +++|.-.||.++..++.|-..... .+++.++|+++|
T Consensus 305 ta~~D--------nSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~----------------~ilsa~~Drt~r 360 (910)
T KOG1539|consen 305 TAGAD--------NSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGH----------------FILSAKQDRTLR 360 (910)
T ss_pred eccCC--------CceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcE----------------EEEecccCcchh
Confidence 97766 7777775544 4 567888899999966655432211 234556688888
Q ss_pred EEeCC
Q 000743 579 QSQIQ 583 (1313)
Q Consensus 579 ~Wdl~ 583 (1313)
..++.
T Consensus 361 ~fs~~ 365 (910)
T KOG1539|consen 361 SFSVI 365 (910)
T ss_pred hhhhh
Confidence 87764
No 157
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.21 E-value=8.3e-11 Score=134.28 Aligned_cols=153 Identities=21% Similarity=0.247 Sum_probs=125.3
Q ss_pred EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEE
Q 000743 344 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 423 (1313)
Q Consensus 344 ~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVW 423 (1313)
.+++|+.|..|++ |.......... ..+-+.+..|.+|+..|+++.|+ |+| ++|+||++++.|.+|
T Consensus 28 ~laT~G~D~~iri--W~v~r~~~~~~----~~~V~y~s~Ls~H~~aVN~vRf~-----p~g----elLASg~D~g~v~lW 92 (434)
T KOG1009|consen 28 KLATAGGDKDIRI--WKVNRSEPGGG----DMKVEYLSSLSRHTRAVNVVRFS-----PDG----ELLASGGDGGEVFLW 92 (434)
T ss_pred ceecccCccceee--eeeeecCCCCC----ceeEEEeecccCCcceeEEEEEc-----CCc----CeeeecCCCceEEEE
Confidence 5899999999999 54332211110 01225567889999999999999 466 899999999999999
Q ss_pred ECC--------C--------CceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC
Q 000743 424 DLG--------S--------GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN 487 (1313)
Q Consensus 424 Dl~--------t--------g~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~ 487 (1313)
-.. + .....++.+|...|..++|+|+ +.++++++.|+++++||+..|+.+..+..|..
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d------~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~ 166 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD------SNFLVSGSVDNSVRLWDVHAGQLLAILDDHEH 166 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCC------CceeeeeeccceEEEEEeccceeEeecccccc
Confidence 876 3 2245567889999999999999 68999999999999999999999999999999
Q ss_pred CcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCC
Q 000743 488 YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 525 (1313)
Q Consensus 488 ~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrT 525 (1313)
.|..++|+|..+|+++-+.| ...+++++..
T Consensus 167 yvqgvawDpl~qyv~s~s~d--------r~~~~~~~~~ 196 (434)
T KOG1009|consen 167 YVQGVAWDPLNQYVASKSSD--------RHPEGFSAKL 196 (434)
T ss_pred ccceeecchhhhhhhhhccC--------cccceeeeee
Confidence 99999999999999986665 6666666544
No 158
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.20 E-value=4.1e-09 Score=118.90 Aligned_cols=185 Identities=25% Similarity=0.337 Sum_probs=143.6
Q ss_pred CceecccCCceEEEEeeeecccccCCEEEEEEc-CCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEe
Q 000743 318 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFF-SGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAH 396 (1313)
Q Consensus 318 ~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~-DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafs 396 (1313)
....+..|...|.+..+.+... .++.++. |+.+++ |+. ..+.....+.+|...|.+++|+
T Consensus 147 ~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~~~~~~~~--~~~-------------~~~~~~~~~~~~~~~v~~~~~~ 207 (466)
T COG2319 147 LIRTLEGHSESVTSLAFSPDGK----LLASGSSLDGTIKL--WDL-------------RTGKPLSTLAGHTDPVSSLAFS 207 (466)
T ss_pred EEEEEecCcccEEEEEECCCCC----EEEecCCCCCceEE--EEc-------------CCCceEEeeccCCCceEEEEEc
Confidence 3556778888888743333332 3666664 899998 643 3356788889999999999998
Q ss_pred ccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEE-EEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCC
Q 000743 397 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLIT-VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET 475 (1313)
Q Consensus 397 P~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~-t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t 475 (1313)
| +| ...+++++.|++|++||...+..+. .+.+|...+ -..|+|+ +..+++++.|+.+++||++.
T Consensus 208 ~-----~~---~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~d~~~~~~~~~~ 272 (466)
T COG2319 208 P-----DG---GLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPD------GSLLASGSSDGTIRLWDLRS 272 (466)
T ss_pred C-----Cc---ceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCC------CCEEEEecCCCcEEEeeecC
Confidence 4 44 1366666999999999999888888 688898886 4489998 57888999999999999987
Q ss_pred CcE-EEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEe--CCCCceeEEee
Q 000743 476 LRV-ERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR--GTASHSMFDHF 544 (1313)
Q Consensus 476 ~~~-l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~--GH~a~Vi~~~~ 544 (1313)
... +..+.+|...+.++.|+|++..+++++.| +.+++||.+++....... +|...+....+
T Consensus 273 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (466)
T COG2319 273 SSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSD--------GTVRLWDLETGKLLSSLTLKGHEGPVSSLSF 336 (466)
T ss_pred CCcEEEEEecCCccEEEEEECCCCCEEEEeeCC--------CcEEEEEcCCCceEEEeeecccCCceEEEEE
Confidence 665 55557888899999999988888886655 789999999988777666 88875655544
No 159
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.18 E-value=5.2e-09 Score=118.06 Aligned_cols=207 Identities=24% Similarity=0.372 Sum_probs=152.9
Q ss_pred ecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCc-cEEEEEE-ecc
Q 000743 321 DFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTG-AVLCLAA-HRM 398 (1313)
Q Consensus 321 ~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~-~V~sLaf-sP~ 398 (1313)
.+..|...+.+..+..... .++.++.|+.+.+ |+.... ......+.++.. .+..+.+ +
T Consensus 60 ~~~~~~~~i~~~~~~~~~~----~~~~~~~d~~~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~-- 119 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGE----LLLSGSSDGTIKL--WDLDNG------------EKLIKSLEGLHDSSVSKLALSS-- 119 (466)
T ss_pred eeeeccceEEEEEECCCCc----EEEEecCCCcEEE--EEcCCC------------ceeEEEEeccCCCceeeEEEEC--
Confidence 4567778888844443333 3677778999999 542111 025666666443 6777776 4
Q ss_pred ccCCCCCccCcEEEEEe-CCCcEEEEECCC-CceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeC-CCeEEEEECCC
Q 000743 399 VGTAKGWSFNEVLVSGS-MDCSIRIWDLGS-GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE-DFSVALASLET 475 (1313)
Q Consensus 399 ~s~pDGr~~~~~LaSGS-~DgtIrVWDl~t-g~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~-DgtV~LWDL~t 475 (1313)
+++ ...++..+ .|+++++||... ......+..|...|..+.|+|+ +..+++++. |+.+++|++..
T Consensus 120 ---~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 187 (466)
T COG2319 120 ---PDG---NSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPD------GKLLASGSSLDGTIKLWDLRT 187 (466)
T ss_pred ---CCc---ceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCC------CCEEEecCCCCCceEEEEcCC
Confidence 344 22555544 499999999998 8888999999999999999999 568888886 99999999999
Q ss_pred CcEEEEecCCCCCcEEEEEcCCCCEEEEE-ecCCCCCCCCCCEEEEEECCCCcEEE-EEeCCCCceeEEeeeccccccee
Q 000743 476 LRVERMFPGHPNYPAKVVWDCPRGYIACL-CRDHSRTSDAVDVLFIWDVKTGARER-VLRGTASHSMFDHFCKGISMNSI 553 (1313)
Q Consensus 476 ~~~l~~l~gH~~~V~sVafsPdg~~Latg-s~DlsGssD~DgtIrVWDlrTG~lv~-~L~GH~a~Vi~~~~c~~~s~~iv 553 (1313)
+..+..+.+|...+.+++|+|++.+++.+ +.| ++|++||..++.... .+.+|...+ ...|.+..
T Consensus 188 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d--------~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~----- 253 (466)
T COG2319 188 GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSD--------GTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDG----- 253 (466)
T ss_pred CceEEeeccCCCceEEEEEcCCcceEEEEecCC--------CcEEEEECCCCcEEeeecCCCCcce-eEeECCCC-----
Confidence 89999999999999999999999844443 443 999999999888888 799999875 33343311
Q ss_pred ecccccCCcccccCcccccCCCcEEEEeCCcc
Q 000743 554 SGSVLNGNTSVSSLLLPIHEDGTFRQSQIQND 585 (1313)
Q Consensus 554 SGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~~~ 585 (1313)
..++..+.|+++++|+++..
T Consensus 254 ------------~~~~~~~~d~~~~~~~~~~~ 273 (466)
T COG2319 254 ------------SLLASGSSDGTIRLWDLRSS 273 (466)
T ss_pred ------------CEEEEecCCCcEEEeeecCC
Confidence 12224556999999998743
No 160
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.18 E-value=1.4e-09 Score=130.68 Aligned_cols=210 Identities=12% Similarity=0.120 Sum_probs=154.1
Q ss_pred CceecccCCceEEEEeeeecccccCC--EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEE
Q 000743 318 GRDDFVHKEKIVSSSMVISESFYAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAA 395 (1313)
Q Consensus 318 ~~~~~~~H~~~Vts~l~is~~~fsP~--~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLaf 395 (1313)
......||.+.|+. ..|+|. .+++.+.|.+-|+ |-... +. ..| ..+..-+-|....+|+++
T Consensus 353 ~~~~iSGH~~~V~d------v~W~psGeflLsvs~DQTTRl--Fa~wg---~q-~~w-----HEiaRPQiHGyDl~c~~~ 415 (764)
T KOG1063|consen 353 QEPVISGHVDGVKD------VDWDPSGEFLLSVSLDQTTRL--FARWG---RQ-QEW-----HEIARPQIHGYDLTCLSF 415 (764)
T ss_pred ecccccccccccee------eeecCCCCEEEEeccccceee--ecccc---cc-cce-----eeecccccccccceeeeh
Confidence 34567799999999 555554 3899999999999 42110 00 012 222333457778999998
Q ss_pred eccccCCCCCccCcEEEEEeCCCcEEEEECCC-------------------------------------------Cc---
Q 000743 396 HRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS-------------------------------------------GN--- 429 (1313)
Q Consensus 396 sP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~t-------------------------------------------g~--- 429 (1313)
-+ .+..++||...+.+|+++... |.
T Consensus 416 vn---------~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~ 486 (764)
T KOG1063|consen 416 VN---------EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAA 486 (764)
T ss_pred cc---------CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccc
Confidence 63 146899999999999998631 00
Q ss_pred ------------------------------eEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCC-----eEEEEECC
Q 000743 430 ------------------------------LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDF-----SVALASLE 474 (1313)
Q Consensus 430 ------------------------------~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~Dg-----tV~LWDL~ 474 (1313)
.++++.||...|++++.+|+ +++++|++... .|+||+..
T Consensus 487 ~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~------gnliASaCKS~~~ehAvI~lw~t~ 560 (764)
T KOG1063|consen 487 VCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPT------GNLIASACKSSLKEHAVIRLWNTA 560 (764)
T ss_pred eeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCC------CCEEeehhhhCCccceEEEEEecc
Confidence 02345689999999999999 79999998654 58999999
Q ss_pred CCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcE----EEEEeCCCCceeEEeeeccccc
Q 000743 475 TLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR----ERVLRGTASHSMFDHFCKGISM 550 (1313)
Q Consensus 475 t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~l----v~~L~GH~a~Vi~~~~c~~~s~ 550 (1313)
+...++.+.+|.-.|+.++|+|||+||++.|+| .++.+|....... ...++.|+--+..+.|.+
T Consensus 561 ~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRD--------Rt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~p---- 628 (764)
T KOG1063|consen 561 NWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRD--------RTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSP---- 628 (764)
T ss_pred chhhhheecccceEEEEEEECCCCcEEEEeecC--------ceEEeeeeecccchhhhhccccccceEEEEcccCc----
Confidence 999999999999999999999999999999998 9999998754321 233678886665544433
Q ss_pred ceeecccccCCcccccCcccccCCCcEEEEeCCc
Q 000743 551 NSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 584 (1313)
Q Consensus 551 ~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~~ 584 (1313)
.+-.++..|+|.++++|....
T Consensus 629 -------------de~~FaTaSRDK~VkVW~~~~ 649 (764)
T KOG1063|consen 629 -------------DEKYFATASRDKKVKVWEEPD 649 (764)
T ss_pred -------------ccceeEEecCCceEEEEeccC
Confidence 112367778999999999764
No 161
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.17 E-value=1.3e-11 Score=149.42 Aligned_cols=210 Identities=18% Similarity=0.230 Sum_probs=151.8
Q ss_pred CceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEec
Q 000743 318 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 397 (1313)
Q Consensus 318 ~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP 397 (1313)
.+..+.+|...|+|..+--... .+++|+.|.-++| | .++++.+....+||.+.|+.++.+.
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~----~Iitgsdd~lvKi--w-------------S~et~~~lAs~rGhs~ditdlavs~ 242 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGR----YIITGSDDRLVKI--W-------------SMETARCLASCRGHSGDITDLAVSS 242 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccc----eEeecCccceeee--e-------------eccchhhhccCCCCccccchhccch
Confidence 3567889999999943222222 5999999999999 5 3467789999999999999999862
Q ss_pred cccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCc
Q 000743 398 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR 477 (1313)
Q Consensus 398 ~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~ 477 (1313)
....++++|.|+.|++|.+.++.++..+.+|++.|++++|+|- .+.+.||++++||.+ ..
T Consensus 243 ---------~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~----------~sss~dgt~~~wd~r-~~ 302 (1113)
T KOG0644|consen 243 ---------NNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPR----------ASSSDDGTCRIWDAR-LE 302 (1113)
T ss_pred ---------hhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCcc----------ccCCCCCceEecccc-cc
Confidence 3468999999999999999999999999999999999999996 277899999999987 11
Q ss_pred EEE---------------Ee----------cC------CCCCcEEEEEcCCCCEEEEEecCCC-----CCCCCCCEEEEE
Q 000743 478 VER---------------MF----------PG------HPNYPAKVVWDCPRGYIACLCRDHS-----RTSDAVDVLFIW 521 (1313)
Q Consensus 478 ~l~---------------~l----------~g------H~~~V~sVafsPdg~~Latgs~Dls-----GssD~DgtIrVW 521 (1313)
+.. .+ .+ ......+++|+..+-.+++.+.|+. +-. +-.+.+|
T Consensus 303 ~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~--~~~~~vw 380 (1113)
T KOG0644|consen 303 PRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARN--DHRLCVW 380 (1113)
T ss_pred ccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeee--eeEeeee
Confidence 100 00 00 0112345566666555565554422 222 2678999
Q ss_pred ECCCCcEEEEEeCCCCceeEEeeecccccceeecccccCCcccccCcccccCCCcEEEEeCCc
Q 000743 522 DVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 584 (1313)
Q Consensus 522 DlrTG~lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~~ 584 (1313)
++.+|.+++.+.||...+....+.+- .+. -.++...||..-+||+-.
T Consensus 381 nl~~g~l~H~l~ghsd~~yvLd~Hpf-n~r---------------i~msag~dgst~iwdi~e 427 (1113)
T KOG0644|consen 381 NLYTGQLLHNLMGHSDEVYVLDVHPF-NPR---------------IAMSAGYDGSTIIWDIWE 427 (1113)
T ss_pred ecccchhhhhhcccccceeeeeecCC-CcH---------------hhhhccCCCceEeeeccc
Confidence 99999999999999998854443321 111 112334488899999853
No 162
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.17 E-value=5.1e-07 Score=105.89 Aligned_cols=357 Identities=13% Similarity=0.092 Sum_probs=220.2
Q ss_pred ecCcEEEEEEeceeEEEeccCCceeeEEeecccceeecCCCcceeEEeeEEEeeecccccccccccccccceeEEEEecC
Q 000743 105 TCGNIIALVLKDHCIFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNR 184 (1313)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~vw~~~ 184 (1313)
|+-|+|...-|.+=-|+-+..|...-.. ==+|... +.++.-=.|+|-|+. +-|.- .+++.||+-.
T Consensus 211 td~nliit~Gk~H~~Fw~~~~~~l~k~~------~~fek~e-kk~Vl~v~F~engdv--iTgDS------~G~i~Iw~~~ 275 (626)
T KOG2106|consen 211 TDPNLIITCGKGHLYFWTLRGGSLVKRQ------GIFEKRE-KKFVLCVTFLENGDV--ITGDS------GGNILIWSKG 275 (626)
T ss_pred CCCcEEEEeCCceEEEEEccCCceEEEe------ecccccc-ceEEEEEEEcCCCCE--EeecC------CceEEEEeCC
Confidence 5788998889999999988777543333 2344554 478888889977766 34444 6899999998
Q ss_pred CCeEEEEEeccccccccccccccCcccCCCCCceeEEEEEeeeeeEEEEeeeeccCCCccccceEEEEEecccCCCCCc-
Q 000743 185 GSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGK- 263 (1313)
Q Consensus 185 ~~~~vy~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~iq~~~~lv~i~svc~d~e~~l~W~p~vtVWsl~~~~~~~~~- 263 (1313)
+.++.+.+. . .+.+ -+..++..+-.+. +..-| ..+..|+ ++....
T Consensus 276 ~~~~~k~~~-a----------------H~gg---v~~L~~lr~Gtll--SGgKD--------Rki~~Wd----~~y~k~r 321 (626)
T KOG2106|consen 276 TNRISKQVH-A----------------HDGG---VFSLCMLRDGTLL--SGGKD--------RKIILWD----DNYRKLR 321 (626)
T ss_pred CceEEeEee-e----------------cCCc---eEEEEEecCccEe--ecCcc--------ceEEecc----ccccccc
Confidence 888877443 1 1122 2555665552221 22121 1455664 111111
Q ss_pred eeEEeecCCeeeeeeecceeeeCCCCeeeeeeccccccccccccccccCCCCCCCceecccCCceEEEEeeeecccccCC
Q 000743 264 QCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPY 343 (1313)
Q Consensus 264 q~~~~g~~~~~~dWiss~l~~~~~dGi~Iwk~~~ss~~~~i~~l~~~~~~~~~~~~~~~~~H~~~Vts~l~is~~~fsP~ 343 (1313)
+.++-..-+.... ++.-.++ +.|.-.+-.--+.+ ..........+|..........++..
T Consensus 322 ~~elPe~~G~iRt-----v~e~~~d-i~vGTtrN~iL~Gt----------~~~~f~~~v~gh~delwgla~hps~~---- 381 (626)
T KOG2106|consen 322 ETELPEQFGPIRT-----VAEGKGD-ILVGTTRNFILQGT----------LENGFTLTVQGHGDELWGLATHPSKN---- 381 (626)
T ss_pred cccCchhcCCeeE-----EecCCCc-EEEeeccceEEEee----------ecCCceEEEEecccceeeEEcCCChh----
Confidence 1111111111000 0111111 11110000000000 01123445567888777733222222
Q ss_pred EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEE
Q 000743 344 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 423 (1313)
Q Consensus 344 ~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVW 423 (1313)
.++++++|+.+++ |+ .+...|.. --.+++.|+.|+| . ..++.|+..|.-.+.
T Consensus 382 q~~T~gqdk~v~l--W~------~~k~~wt~----------~~~d~~~~~~fhp---------s-g~va~Gt~~G~w~V~ 433 (626)
T KOG2106|consen 382 QLLTCGQDKHVRL--WN------DHKLEWTK----------IIEDPAECADFHP---------S-GVVAVGTATGRWFVL 433 (626)
T ss_pred heeeccCcceEEE--cc------CCceeEEE----------EecCceeEeeccC---------c-ceEEEeeccceEEEE
Confidence 4899999999999 64 11111221 1245688999997 2 389999999999999
Q ss_pred ECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCC-cEEEEecC-CCCCcEEEEEcCCCCEE
Q 000743 424 DLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL-RVERMFPG-HPNYPAKVVWDCPRGYI 501 (1313)
Q Consensus 424 Dl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~-~~l~~l~g-H~~~V~sVafsPdg~~L 501 (1313)
|+++...+..-. ...+++.++|+|+ |.+|+-|+.|+.|.||-+... +....... |.++++.+.|++|++|+
T Consensus 434 d~e~~~lv~~~~-d~~~ls~v~ysp~------G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~ 506 (626)
T KOG2106|consen 434 DTETQDLVTIHT-DNEQLSVVRYSPD------GAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFL 506 (626)
T ss_pred ecccceeEEEEe-cCCceEEEEEcCC------CCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceE
Confidence 999966555444 4889999999999 899999999999999998644 33333322 23689999999999999
Q ss_pred EEEecC----------------------------------------------------CCCCCCCCCEEEEEECCC---C
Q 000743 502 ACLCRD----------------------------------------------------HSRTSDAVDVLFIWDVKT---G 526 (1313)
Q Consensus 502 atgs~D----------------------------------------------------lsGssD~DgtIrVWDlrT---G 526 (1313)
.+.+-| +++++|.-|+|+++...- .
T Consensus 507 ~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~r 586 (626)
T KOG2106|consen 507 VSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPR 586 (626)
T ss_pred EeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCc
Confidence 886664 777888889999997532 2
Q ss_pred cEEEEEeCCCCceeEEeeecccccceeecccccCCcccccCcccccCCCcEEEEeC
Q 000743 527 ARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 582 (1313)
Q Consensus 527 ~lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl 582 (1313)
..-..+.||...+..+.|.-..+.-+.+| .|..|-+|.+
T Consensus 587 A~~he~~ghs~~vt~V~Fl~~d~~li~tg-----------------~D~Si~qW~l 625 (626)
T KOG2106|consen 587 APSHEYGGHSSHVTNVAFLCKDSHLISTG-----------------KDTSIMQWRL 625 (626)
T ss_pred ccceeeccccceeEEEEEeeCCceEEecC-----------------CCceEEEEEe
Confidence 34577889999998888754333223333 4888999985
No 163
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.17 E-value=3.3e-10 Score=127.25 Aligned_cols=147 Identities=15% Similarity=0.158 Sum_probs=114.3
Q ss_pred EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEE
Q 000743 344 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 423 (1313)
Q Consensus 344 ~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVW 423 (1313)
.++++..+|+|++++| .+++.+..+++|...++.+.|.. .| ..+.+.||+.||+||+|
T Consensus 42 ~vav~lSngsv~lyd~---------------~tg~~l~~fk~~~~~~N~vrf~~----~d---s~h~v~s~ssDG~Vr~w 99 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDK---------------GTGQLLEEFKGPPATTNGVRFIS----CD---SPHGVISCSSDGTVRLW 99 (376)
T ss_pred eEEEEecCCeEEEEec---------------cchhhhheecCCCCcccceEEec----CC---CCCeeEEeccCCeEEEE
Confidence 5899999999999666 35678899999999999999962 22 24679999999999999
Q ss_pred ECCCCceE--EEEeccC-CCEEEEEECCCCCCCCCCCEEEEEe----CCCeEEEEECCCCcE-EEE-ecCCCCCcEEEEE
Q 000743 424 DLGSGNLI--TVMHHHV-APVRQIILSPPQTEHPWSDCFLSVG----EDFSVALASLETLRV-ERM-FPGHPNYPAKVVW 494 (1313)
Q Consensus 424 Dl~tg~~l--~t~~gH~-~~V~sV~fsPd~~~~~~g~~LaSgS----~DgtV~LWDL~t~~~-l~~-l~gH~~~V~sVaf 494 (1313)
|+++.... ..+..|. .+-.+++.+-. ++.+++|. .|-.|.+||+|..+. +.. ...|.+.|++++|
T Consensus 100 D~Rs~~e~a~~~~~~~~~~~f~~ld~nck------~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrF 173 (376)
T KOG1188|consen 100 DIRSQAESARISWTQQSGTPFICLDLNCK------KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRF 173 (376)
T ss_pred EeecchhhhheeccCCCCCcceEeeccCc------CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEe
Confidence 99976543 3455565 45667666544 46788775 367899999998776 443 4689999999999
Q ss_pred cCCCC-EEEEEecCCCCCCCCCCEEEEEECCCC
Q 000743 495 DCPRG-YIACLCRDHSRTSDAVDVLFIWDVKTG 526 (1313)
Q Consensus 495 sPdg~-~Latgs~DlsGssD~DgtIrVWDlrTG 526 (1313)
||... .|++|+.| |-|.|+|++..
T Consensus 174 HP~~pnlLlSGSvD--------GLvnlfD~~~d 198 (376)
T KOG1188|consen 174 HPSDPNLLLSGSVD--------GLVNLFDTKKD 198 (376)
T ss_pred cCCCCCeEEeeccc--------ceEEeeecCCC
Confidence 99775 67776555 99999999754
No 164
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.17 E-value=6.4e-11 Score=139.64 Aligned_cols=119 Identities=18% Similarity=0.296 Sum_probs=107.6
Q ss_pred ccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCC-------ceEEEEeccCCCEEEEEECCCCCCCCCCCEEE
Q 000743 388 GAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG-------NLITVMHHHVAPVRQIILSPPQTEHPWSDCFL 460 (1313)
Q Consensus 388 ~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg-------~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~La 460 (1313)
..|+++.|.| - +.+.|+.+++|+.|++|.+..+ ++...+++|...|+++.|||-- .+.++
T Consensus 628 t~vtDl~WdP----F----D~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLA-----advLa 694 (1012)
T KOG1445|consen 628 TLVTDLHWDP----F----DDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLA-----ADVLA 694 (1012)
T ss_pred ceeeecccCC----C----ChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchh-----hhHhh
Confidence 4599999998 2 3478999999999999998753 5677889999999999999974 47899
Q ss_pred EEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCc
Q 000743 461 SVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 527 (1313)
Q Consensus 461 SgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~ 527 (1313)
+++.|.+|+|||+++++....+.+|++.|..++|+|+|+.+++.|.| |+|+||+.++++
T Consensus 695 ~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKD--------g~~rVy~Prs~e 753 (1012)
T KOG1445|consen 695 VASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKD--------GTLRVYEPRSRE 753 (1012)
T ss_pred hhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecC--------ceEEEeCCCCCC
Confidence 99999999999999999999999999999999999999999999998 999999998864
No 165
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.17 E-value=6e-10 Score=129.24 Aligned_cols=186 Identities=15% Similarity=0.153 Sum_probs=142.4
Q ss_pred EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEE
Q 000743 344 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 423 (1313)
Q Consensus 344 ~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVW 423 (1313)
.+++|+..+.|+| ||+ +...+++.+++|+..|+++.|+- .+.+|++++..|.|.|.
T Consensus 93 y~~sgG~~~~Vki--wdl-------------~~kl~hr~lkdh~stvt~v~YN~---------~DeyiAsvs~gGdiiih 148 (673)
T KOG4378|consen 93 YEISGGQSGCVKI--WDL-------------RAKLIHRFLKDHQSTVTYVDYNN---------TDEYIASVSDGGDIIIH 148 (673)
T ss_pred eeeccCcCceeee--hhh-------------HHHHHhhhccCCcceeEEEEecC---------CcceeEEeccCCcEEEE
Confidence 4889999999999 654 34467889999999999999972 35799999999999999
Q ss_pred ECCCCceEEEEeccCC-CEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCCcEEEEEcCCCC-E
Q 000743 424 DLGSGNLITVMHHHVA-PVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMF-PGHPNYPAKVVWDCPRG-Y 500 (1313)
Q Consensus 424 Dl~tg~~l~t~~gH~~-~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l-~gH~~~V~sVafsPdg~-~ 500 (1313)
.+.++.....|..-.+ .|+-+.|+|.. ..++.+++.||.|.+||+....+...+ ..|..+...|+|+|... .
T Consensus 149 ~~~t~~~tt~f~~~sgqsvRll~ys~sk-----r~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l 223 (673)
T KOG4378|consen 149 GTKTKQKTTTFTIDSGQSVRLLRYSPSK-----RFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEAL 223 (673)
T ss_pred ecccCccccceecCCCCeEEEeeccccc-----ceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccce
Confidence 9999988888874434 56689999984 367889999999999999887777554 67888899999999776 5
Q ss_pred EEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEeeecccccceeecccccCCcccccCcccccCCCcEEEE
Q 000743 501 IACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQS 580 (1313)
Q Consensus 501 Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~W 580 (1313)
|++.+.| +.|++||++..+...++.... +-..++|.+ .|.++..+.. .|.+-.+
T Consensus 224 ~vsVG~D--------kki~~yD~~s~~s~~~l~y~~-Plstvaf~~------------~G~~L~aG~s-----~G~~i~Y 277 (673)
T KOG4378|consen 224 LVSVGYD--------KKINIYDIRSQASTDRLTYSH-PLSTVAFSE------------CGTYLCAGNS-----KGELIAY 277 (673)
T ss_pred EEEeccc--------ceEEEeecccccccceeeecC-CcceeeecC------------CceEEEeecC-----CceEEEE
Confidence 5555555 999999999887776665322 333333432 1223333322 7889999
Q ss_pred eCCc
Q 000743 581 QIQN 584 (1313)
Q Consensus 581 dl~~ 584 (1313)
|++-
T Consensus 278 D~R~ 281 (673)
T KOG4378|consen 278 DMRS 281 (673)
T ss_pred eccc
Confidence 9873
No 166
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.16 E-value=3.2e-10 Score=131.01 Aligned_cols=176 Identities=14% Similarity=0.125 Sum_probs=131.8
Q ss_pred eEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCC----ceEEEEeccCCCEEEEEECCCCCCC
Q 000743 378 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG----NLITVMHHHVAPVRQIILSPPQTEH 453 (1313)
Q Consensus 378 ~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg----~~l~t~~gH~~~V~sV~fsPd~~~~ 453 (1313)
......+-|.++|++++|||. -...++++|..-|.|-+||+.+. .-+..|..|+++|.++.|+|.++
T Consensus 177 ~~~~v~kv~~~Rit~l~fHPt-------~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~-- 247 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFHPT-------ENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANT-- 247 (498)
T ss_pred eecceeEecccceEEEEeccc-------CcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCCh--
Confidence 445566778999999999983 13478999999999999999633 34677889999999999999864
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEEecC--CCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcE-EE
Q 000743 454 PWSDCFLSVGEDFSVALASLETLRVERMFPG--HPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR-ER 530 (1313)
Q Consensus 454 ~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~g--H~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~l-v~ 530 (1313)
..|++.|.||+|++-|++.+.....+.- .......+.|+.+..-++.+..- |...+||.|++.. ..
T Consensus 248 ---s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~--------G~f~~iD~R~~~s~~~ 316 (498)
T KOG4328|consen 248 ---SQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNV--------GNFNVIDLRTDGSEYE 316 (498)
T ss_pred ---hheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecc--------cceEEEEeecCCccch
Confidence 6899999999999999987654333332 33355688888888777765443 7899999999654 66
Q ss_pred EEeCCCCceeEEeeecccccc-eeecccccCCcccccCcccccCCCcEEEEeCCccccccc
Q 000743 531 VLRGTASHSMFDHFCKGISMN-SISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERGVA 590 (1313)
Q Consensus 531 ~L~GH~a~Vi~~~~c~~~s~~-ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~~~~~~~~ 590 (1313)
.+.-|...|..+++.+ ..+. ..|++ + |+|.|+||+++...+.+
T Consensus 317 ~~~lh~kKI~sv~~NP-~~p~~laT~s-----------~-----D~T~kIWD~R~l~~K~s 360 (498)
T KOG4328|consen 317 NLRLHKKKITSVALNP-VCPWFLATAS-----------L-----DQTAKIWDLRQLRGKAS 360 (498)
T ss_pred hhhhhhcccceeecCC-CCchheeecc-----------c-----CcceeeeehhhhcCCCC
Confidence 7778888887774432 3332 33333 3 99999999998766544
No 167
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=3.5e-09 Score=117.79 Aligned_cols=180 Identities=12% Similarity=0.190 Sum_probs=129.5
Q ss_pred CceecccCCceEEEEeeeecccccCC----EEEEEEcCCcEEEEEeeccccCCCCCCccccCCc-e-EEEEEecCCccEE
Q 000743 318 GRDDFVHKEKIVSSSMVISESFYAPY----AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSH-V-SRQYFLGHTGAVL 391 (1313)
Q Consensus 318 ~~~~~~~H~~~Vts~l~is~~~fsP~----~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg-~-~~~~L~GH~~~V~ 391 (1313)
...++...+..|+. +.|.|. ++++++.||.+||+. ..... ....|..... + ..-....|.....
T Consensus 104 ~~ttl~DsrssV~D------V~FaP~hlGLklA~~~aDG~lRIYE--A~dp~--nLs~W~Lq~Ei~~~~~pp~~~~~~~~ 173 (361)
T KOG2445|consen 104 RRTTLVDSRSSVTD------VKFAPKHLGLKLAAASADGILRIYE--APDPM--NLSQWTLQHEIQNVIDPPGKNKQPCF 173 (361)
T ss_pred EEEEeecCCcceeE------EEecchhcceEEEEeccCcEEEEEe--cCCcc--ccccchhhhhhhhccCCcccccCcce
Confidence 34566677778887 677776 489999999999953 22221 1123432111 0 0112235677889
Q ss_pred EEEEeccccCCCCCccCcEEEEEeCC-----CcEEEEECCCC----ceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEE
Q 000743 392 CLAAHRMVGTAKGWSFNEVLVSGSMD-----CSIRIWDLGSG----NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSV 462 (1313)
Q Consensus 392 sLafsP~~s~pDGr~~~~~LaSGS~D-----gtIrVWDl~tg----~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSg 462 (1313)
|+.|+|. |-..++|+.|+.+ +.++||....+ ..+.++.+|+.+|++++|.|+- .++-+.++.+
T Consensus 174 CvsWn~s------r~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~--Gr~y~~lAvA 245 (361)
T KOG2445|consen 174 CVSWNPS------RMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNI--GRSYHLLAVA 245 (361)
T ss_pred EEeeccc------cccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecccc--CCceeeEEEe
Confidence 9999872 4456788888877 58889986643 2456788999999999999984 3445789999
Q ss_pred eCCCeEEEEECCCC--------------------cEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEE
Q 000743 463 GEDFSVALASLETL--------------------RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 522 (1313)
Q Consensus 463 S~DgtV~LWDL~t~--------------------~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWD 522 (1313)
+.|| |+||.++.. +.+..+.+|.+.|+.+.|+-.|..|++.+.| |+||+|.
T Consensus 246 ~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdD--------G~VRLWk 316 (361)
T KOG2445|consen 246 TKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDD--------GCVRLWK 316 (361)
T ss_pred ecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCC--------ceeeehh
Confidence 9999 999998742 2345678999999999999999999876554 9999998
Q ss_pred CC
Q 000743 523 VK 524 (1313)
Q Consensus 523 lr 524 (1313)
..
T Consensus 317 an 318 (361)
T KOG2445|consen 317 AN 318 (361)
T ss_pred hh
Confidence 64
No 168
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.13 E-value=7.6e-10 Score=122.99 Aligned_cols=155 Identities=18% Similarity=0.196 Sum_probs=113.5
Q ss_pred EEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEE
Q 000743 390 VLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVA 469 (1313)
Q Consensus 390 V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~ 469 (1313)
-.|+.|+ +.| .+|+.|..||.|-|||+.|...-+.+.+|..+|++++|+++ |+.++|+|.|.+|+
T Consensus 26 a~~~~Fs-----~~G----~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~d------gr~LltsS~D~si~ 90 (405)
T KOG1273|consen 26 AECCQFS-----RWG----DYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRD------GRKLLTSSRDWSIK 90 (405)
T ss_pred cceEEec-----cCc----ceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCC------CCEeeeecCCceeE
Confidence 6789998 455 89999999999999999999988899999999999999999 89999999999999
Q ss_pred EEECCCCcEEEEecCCCCCcEEE-----------------------------------------------EEcCCCCEEE
Q 000743 470 LASLETLRVERMFPGHPNYPAKV-----------------------------------------------VWDCPRGYIA 502 (1313)
Q Consensus 470 LWDL~t~~~l~~l~gH~~~V~sV-----------------------------------------------afsPdg~~La 502 (1313)
+||+..|.+++.++- .++|+.+ .|++.|+||+
T Consensus 91 lwDl~~gs~l~rirf-~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIi 169 (405)
T KOG1273|consen 91 LWDLLKGSPLKRIRF-DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYII 169 (405)
T ss_pred EEeccCCCceeEEEc-cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEE
Confidence 999999977765542 1233333 3556667777
Q ss_pred EEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCC-CceeEEeeecccccceeecccccCCcccccCcccccCCCcEEEEe
Q 000743 503 CLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTA-SHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 581 (1313)
Q Consensus 503 tgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~-a~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wd 581 (1313)
+|..- |.+.++|.+|-+++..++-.+ ..+-...+.. .|.++.-+ .+|+.||+++
T Consensus 170 tGtsK--------Gkllv~~a~t~e~vas~rits~~~IK~I~~s~------------~g~~liiN-----tsDRvIR~ye 224 (405)
T KOG1273|consen 170 TGTSK--------GKLLVYDAETLECVASFRITSVQAIKQIIVSR------------KGRFLIIN-----TSDRVIRTYE 224 (405)
T ss_pred EecCc--------ceEEEEecchheeeeeeeechheeeeEEEEec------------cCcEEEEe-----cCCceEEEEe
Confidence 65443 888899988888776665443 2221111111 11222222 3499999999
Q ss_pred CCcc
Q 000743 582 IQND 585 (1313)
Q Consensus 582 l~~~ 585 (1313)
++..
T Consensus 225 ~~di 228 (405)
T KOG1273|consen 225 ISDI 228 (405)
T ss_pred hhhh
Confidence 8743
No 169
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.13 E-value=8.5e-10 Score=122.79 Aligned_cols=155 Identities=17% Similarity=0.195 Sum_probs=119.4
Q ss_pred CccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCC
Q 000743 387 TGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDF 466 (1313)
Q Consensus 387 ~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~Dg 466 (1313)
.+.|.++.|+| ..+.|+.+|+||+++++|....+....|+ |..++.+.+|.++ ..+++|+-||
T Consensus 13 ~d~IS~v~f~~---------~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~-------~~~~~G~~dg 75 (323)
T KOG1036|consen 13 EDGISSVKFSP---------SSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADE-------STIVTGGLDG 75 (323)
T ss_pred hhceeeEEEcC---------cCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCC-------ceEEEeccCc
Confidence 56799999985 23567777899999999999888888887 9999999999987 6799999999
Q ss_pred eEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEeeec
Q 000743 467 SVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCK 546 (1313)
Q Consensus 467 tV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~ 546 (1313)
.|+.+|+.+++.. .+..|..++.|+.+.+....+++|+-| ++|++||.|+...+..+..-. .| +|.
T Consensus 76 ~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD--------~~ik~wD~R~~~~~~~~d~~k-kV----y~~ 141 (323)
T KOG1036|consen 76 QVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWD--------KTIKFWDPRNKVVVGTFDQGK-KV----YCM 141 (323)
T ss_pred eEEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcccC--------ccEEEEeccccccccccccCc-eE----EEE
Confidence 9999999887664 455688999999999998999986554 999999999855544443322 44 664
Q ss_pred ccccceeecccccCCcccccCcccccCCCcEEEEeCCcccc
Q 000743 547 GISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDER 587 (1313)
Q Consensus 547 ~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~~~~~ 587 (1313)
....+ .++- -..|..+.+||+++...
T Consensus 142 ~v~g~----------~LvV-----g~~~r~v~iyDLRn~~~ 167 (323)
T KOG1036|consen 142 DVSGN----------RLVV-----GTSDRKVLIYDLRNLDE 167 (323)
T ss_pred eccCC----------EEEE-----eecCceEEEEEcccccc
Confidence 32221 1111 12488899999987553
No 170
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.13 E-value=3.9e-10 Score=128.95 Aligned_cols=136 Identities=19% Similarity=0.313 Sum_probs=116.4
Q ss_pred CccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCc---------eEEEEeccCCCEEEEEECCCCCCCCCCC
Q 000743 387 TGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN---------LITVMHHHVAPVRQIILSPPQTEHPWSD 457 (1313)
Q Consensus 387 ~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~---------~l~t~~gH~~~V~sV~fsPd~~~~~~g~ 457 (1313)
..+|..+.|++ + ..+.++||+.|..||+|-+..+. .+..+..|...|+.+.|+|+ |+
T Consensus 13 ~~pv~s~dfq~-----n---~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~------ge 78 (434)
T KOG1009|consen 13 HEPVYSVDFQK-----N---SLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPD------GE 78 (434)
T ss_pred CCceEEEEecc-----C---cccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCC------cC
Confidence 35789999984 2 23499999999999999987432 35567889999999999999 89
Q ss_pred EEEEEeCCCeEEEEECC--------C--------CcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEE
Q 000743 458 CFLSVGEDFSVALASLE--------T--------LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIW 521 (1313)
Q Consensus 458 ~LaSgS~DgtV~LWDL~--------t--------~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVW 521 (1313)
.++||++++.|.+|-.. + ......+.+|...+..++|+|++.++++++.| +++++|
T Consensus 79 lLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~d--------ns~~l~ 150 (434)
T KOG1009|consen 79 LLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVD--------NSVRLW 150 (434)
T ss_pred eeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeecc--------ceEEEE
Confidence 99999999999999765 2 23455778999999999999999999998877 999999
Q ss_pred ECCCCcEEEEEeCCCCceeEEee
Q 000743 522 DVKTGARERVLRGTASHSMFDHF 544 (1313)
Q Consensus 522 DlrTG~lv~~L~GH~a~Vi~~~~ 544 (1313)
|+..|.++..+.+|..-|-.++|
T Consensus 151 Dv~~G~l~~~~~dh~~yvqgvaw 173 (434)
T KOG1009|consen 151 DVHAGQLLAILDDHEHYVQGVAW 173 (434)
T ss_pred EeccceeEeeccccccccceeec
Confidence 99999999999999998877765
No 171
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.12 E-value=1.4e-09 Score=120.93 Aligned_cols=102 Identities=19% Similarity=0.274 Sum_probs=89.4
Q ss_pred CcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECC---CC-----cEE
Q 000743 408 NEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE---TL-----RVE 479 (1313)
Q Consensus 408 ~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~---t~-----~~l 479 (1313)
..+|+|+|.|.+|.+||++ |+.+..+......-+..+.+|+ |+++++++----|++|.+- .| .-+
T Consensus 199 ~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~------GRFia~~gFTpDVkVwE~~f~kdG~fqev~rv 271 (420)
T KOG2096|consen 199 AKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPD------GRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRV 271 (420)
T ss_pred ceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCC------CcEEEEecCCCCceEEEEEeccCcchhhhhhh
Confidence 5799999999999999998 9999888766667778889999 8999999998999999863 22 234
Q ss_pred EEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECC
Q 000743 480 RMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 524 (1313)
Q Consensus 480 ~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlr 524 (1313)
..+.||...|...+|+|+...++|.+.| |+++|||+.
T Consensus 272 f~LkGH~saV~~~aFsn~S~r~vtvSkD--------G~wriwdtd 308 (420)
T KOG2096|consen 272 FSLKGHQSAVLAAAFSNSSTRAVTVSKD--------GKWRIWDTD 308 (420)
T ss_pred heeccchhheeeeeeCCCcceeEEEecC--------CcEEEeecc
Confidence 5789999999999999999999999988 999999974
No 172
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.11 E-value=7.7e-10 Score=129.74 Aligned_cols=169 Identities=17% Similarity=0.246 Sum_probs=126.2
Q ss_pred EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEE
Q 000743 344 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 423 (1313)
Q Consensus 344 ~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVW 423 (1313)
-++.|...|.+.++ +..... ..+..+- ...-.+..|+|+.|-| | ++..++.+-.++...++
T Consensus 187 dllIGf~tGqvq~i--dp~~~~--~sklfne-------~r~i~ktsvT~ikWvp------g--~~~~Fl~a~~sGnlyly 247 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLI--DPINFE--VSKLFNE-------ERLINKSSVTCIKWVP------G--SDSLFLVAHASGNLYLY 247 (636)
T ss_pred ceEEeeccCceEEe--cchhhH--HHHhhhh-------cccccccceEEEEEEe------C--CCceEEEEEecCceEEe
Confidence 38888999999883 322110 0000000 0001136799999986 1 34677777889999999
Q ss_pred ECCC--------------C--------------ceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCC
Q 000743 424 DLGS--------------G--------------NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET 475 (1313)
Q Consensus 424 Dl~t--------------g--------------~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t 475 (1313)
|... + .++..+.--.+.|+..+|+|| |++++++|.|+.+||+|..+
T Consensus 248 ~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~D------G~~LA~VSqDGfLRvF~fdt 321 (636)
T KOG2394|consen 248 DKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPD------GKYLATVSQDGFLRIFDFDT 321 (636)
T ss_pred eccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCC------CceEEEEecCceEEEeeccH
Confidence 7641 1 123333334568899999998 89999999999999999998
Q ss_pred CcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEeee
Q 000743 476 LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFC 545 (1313)
Q Consensus 476 ~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~c 545 (1313)
.+.+..++..-+...|++|+|||+||++|++| .-|.||.+..++.+..=+||...|..+.|-
T Consensus 322 ~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGED--------DLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 322 QELLGVMKSYFGGLLCVCWSPDGKYIVTGGED--------DLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred HHHHHHHHhhccceEEEEEcCCccEEEecCCc--------ceEEEEEeccceEEEeccccccceeeEeec
Confidence 88777776666678999999999999999988 899999999999999999999999888774
No 173
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.11 E-value=1.3e-08 Score=113.97 Aligned_cols=151 Identities=13% Similarity=0.078 Sum_probs=109.9
Q ss_pred EEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEEC
Q 000743 346 VYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDL 425 (1313)
Q Consensus 346 vsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl 425 (1313)
+++..++.|++ |+. .+++....+..|.+ +..++|+| +| ..++++++.|+.|++||+
T Consensus 47 ~~~~~~~~v~~--~d~-------------~~~~~~~~~~~~~~-~~~~~~~~-----~g---~~l~~~~~~~~~l~~~d~ 102 (300)
T TIGR03866 47 VCASDSDTIQV--IDL-------------ATGEVIGTLPSGPD-PELFALHP-----NG---KILYIANEDDNLVTVIDI 102 (300)
T ss_pred EEECCCCeEEE--EEC-------------CCCcEEEeccCCCC-ccEEEECC-----CC---CEEEEEcCCCCeEEEEEC
Confidence 55667888888 542 34455566655544 46778874 55 234456677999999999
Q ss_pred CCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCC-eEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEE
Q 000743 426 GSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDF-SVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACL 504 (1313)
Q Consensus 426 ~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~Dg-tV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latg 504 (1313)
.+++.+..+.. ...+.+++|+|+ ++.+++++.++ .+..||.++++.+..+... ..+..++|+|++++++++
T Consensus 103 ~~~~~~~~~~~-~~~~~~~~~~~d------g~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~ 174 (300)
T TIGR03866 103 ETRKVLAEIPV-GVEPEGMAVSPD------GKIVVNTSETTNMAHFIDTKTYEIVDNVLVD-QRPRFAEFTADGKELWVS 174 (300)
T ss_pred CCCeEEeEeeC-CCCcceEEECCC------CCEEEEEecCCCeEEEEeCCCCeEEEEEEcC-CCccEEEECCCCCEEEEE
Confidence 99888888763 345788999999 68888888765 5678899988876655432 356789999999988754
Q ss_pred ecCCCCCCCCCCEEEEEECCCCcEEEEEeCC
Q 000743 505 CRDHSRTSDAVDVLFIWDVKTGARERVLRGT 535 (1313)
Q Consensus 505 s~DlsGssD~DgtIrVWDlrTG~lv~~L~GH 535 (1313)
+.. |+.|++||+++++.++.+..+
T Consensus 175 ~~~-------~~~v~i~d~~~~~~~~~~~~~ 198 (300)
T TIGR03866 175 SEI-------GGTVSVIDVATRKVIKKITFE 198 (300)
T ss_pred cCC-------CCEEEEEEcCcceeeeeeeec
Confidence 321 389999999999888777643
No 174
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.05 E-value=1.2e-08 Score=125.36 Aligned_cols=257 Identities=16% Similarity=0.192 Sum_probs=161.8
Q ss_pred EEEEEeeeeeEEEEeeeeccCCCccccceEEEEEecccCC--CCCceeEEeec--CCeeeeeeecc----eeeeCCCC-e
Q 000743 220 IHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHS--GPGKQCRMVGE--GFSFVDWVNNS----TFLDENEG-S 290 (1313)
Q Consensus 220 i~~iq~~~~lv~i~svc~d~e~~l~W~p~vtVWsl~~~~~--~~~~q~~~~g~--~~~~~dWiss~----l~~~~~dG-i 290 (1313)
+.|+.++.+++. ..||+. .|.+|.+..... ..+.......+ ......|+.+. ++...-|| +
T Consensus 248 ~~f~p~~p~ll~--gG~y~G--------qV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i 317 (555)
T KOG1587|consen 248 LKFCPFDPNLLA--GGCYNG--------QVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSI 317 (555)
T ss_pred EEeccCCcceEE--eeccCc--------eEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcE
Confidence 455555554433 345543 789998865544 22222222222 22345676543 33444455 4
Q ss_pred eeeeeccccccccccccccccCCCCCCCceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEe-eccccCCCCC
Q 000743 291 CTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQF-DLFERHNSPG 369 (1313)
Q Consensus 291 ~Iwk~~~ss~~~~i~~l~~~~~~~~~~~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~w-dll~~~~~~~ 369 (1313)
..|+++.-........++.... .-..+ .....+++ +.-....|+.++.|++.|.|....+ +...+
T Consensus 318 ~~W~~~~l~~P~e~~~~~~~~~-----~~~~~-~~~~~~t~---~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~----- 383 (555)
T KOG1587|consen 318 CSWDTDMLSLPVEGLLLESKKH-----KGQQS-SKAVGATS---LKFEPTDPNHFIVGTEEGKVYKGCRKGYTPA----- 383 (555)
T ss_pred eeeeccccccchhhcccccccc-----ccccc-ccccceee---EeeccCCCceEEEEcCCcEEEEEeccCCccc-----
Confidence 4486665544222222211110 00000 11123344 2223345668999999999988443 22111
Q ss_pred CccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECC-CCceEEEEeccCCCEEEEEECC
Q 000743 370 ASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLG-SGNLITVMHHHVAPVRQIILSP 448 (1313)
Q Consensus 370 ~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~-tg~~l~t~~gH~~~V~sV~fsP 448 (1313)
.....+.+..+..|.+.|+++.++|. ....++|++ |.+||+|... ...++..+..+...|++++|+|
T Consensus 384 ---~~~~~~~~~~~~~h~g~v~~v~~nPF--------~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSp 451 (555)
T KOG1587|consen 384 ---PEVSYKGHSTFITHIGPVYAVSRNPF--------YPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSP 451 (555)
T ss_pred ---ccccccccccccccCcceEeeecCCC--------ccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcC
Confidence 00122345577789999999999982 234566666 9999999988 7778888998999999999999
Q ss_pred CCCCCCCCCEEEEEeCCCeEEEEECCCC--cEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCC
Q 000743 449 PQTEHPWSDCFLSVGEDFSVALASLETL--RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 525 (1313)
Q Consensus 449 d~~~~~~g~~LaSgS~DgtV~LWDL~t~--~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrT 525 (1313)
..+ ..|+++..||.+-+||+... .++.+...+....+.+.|++.|+.|++|... |++++|++..
T Consensus 452 trp-----avF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~--------G~~~~~~l~~ 517 (555)
T KOG1587|consen 452 TRP-----AVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDAN--------GTTHILKLSE 517 (555)
T ss_pred cCc-----eEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCC--------CcEEEEEcCc
Confidence 853 68999999999999999754 4555555555556789999999999997665 9999999964
No 175
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.04 E-value=4.7e-10 Score=131.31 Aligned_cols=128 Identities=23% Similarity=0.322 Sum_probs=110.0
Q ss_pred EEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEE-eccCCCEEEEEECCCCCCCCCCC
Q 000743 379 SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVM-HHHVAPVRQIILSPPQTEHPWSD 457 (1313)
Q Consensus 379 ~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~-~gH~~~V~sV~fsPd~~~~~~g~ 457 (1313)
..+.|.||+|.|+||.|+ .|| .+|+|||+|-.+.|||....++++.+ .||...|.++.|-|... ..
T Consensus 42 lE~eL~GH~GCVN~LeWn-----~dG----~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tn----nr 108 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWN-----ADG----ELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTN----NR 108 (758)
T ss_pred hhhhhccccceecceeec-----CCC----CEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCC----Ce
Confidence 456789999999999998 577 99999999999999999998988887 58999999999999743 56
Q ss_pred EEEEEeCCCeEEEEECCC----------CcEEEEecCCCCCcEEEEEcCCC-CEEEEEecCCCCCCCCCCEEEEEECCCC
Q 000743 458 CFLSVGEDFSVALASLET----------LRVERMFPGHPNYPAKVVWDCPR-GYIACLCRDHSRTSDAVDVLFIWDVKTG 526 (1313)
Q Consensus 458 ~LaSgS~DgtV~LWDL~t----------~~~l~~l~gH~~~V~sVafsPdg-~~Latgs~DlsGssD~DgtIrVWDlrTG 526 (1313)
+++||+.|..|+++|+.. ....+.+..|...|..++--|++ ..+.++++| |+|+-+|+|..
T Consensus 109 iv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasED--------GtirQyDiREp 180 (758)
T KOG1310|consen 109 IVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASED--------GTIRQYDIREP 180 (758)
T ss_pred EEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCC--------cceeeecccCC
Confidence 899999999999999974 23456677899999999999999 566666665 99999999974
Q ss_pred c
Q 000743 527 A 527 (1313)
Q Consensus 527 ~ 527 (1313)
+
T Consensus 181 h 181 (758)
T KOG1310|consen 181 H 181 (758)
T ss_pred c
Confidence 3
No 176
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.02 E-value=2.4e-08 Score=111.74 Aligned_cols=192 Identities=16% Similarity=0.177 Sum_probs=138.1
Q ss_pred EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEec--CCcc---EEEEEEeccccCCCCCccCcEEEEEeCCC
Q 000743 344 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLG--HTGA---VLCLAAHRMVGTAKGWSFNEVLVSGSMDC 418 (1313)
Q Consensus 344 ~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~G--H~~~---V~sLafsP~~s~pDGr~~~~~LaSGS~Dg 418 (1313)
..+..+.+.-|.+ || .-+|+....+++ |.+. -.+|+|+ ||| ..|+. +..+
T Consensus 125 l~a~ssr~~PIh~--wd-------------aftG~lraSy~~ydh~de~taAhsL~Fs-----~DG----eqlfa-Gykr 179 (406)
T KOG2919|consen 125 LFAVSSRDQPIHL--WD-------------AFTGKLRASYRAYDHQDEYTAAHSLQFS-----PDG----EQLFA-GYKR 179 (406)
T ss_pred eeeeccccCceee--ee-------------ccccccccchhhhhhHHhhhhheeEEec-----CCC----CeEee-cccc
Confidence 3566667777777 54 344555555543 4443 3588898 577 77765 4678
Q ss_pred cEEEEEC-CCCceEE---EE----eccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcE
Q 000743 419 SIRIWDL-GSGNLIT---VM----HHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPA 490 (1313)
Q Consensus 419 tIrVWDl-~tg~~l~---t~----~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~ 490 (1313)
+||++|+ +.|.-.. ++ .+..+.+.+++|+|.. ..+++.++--.++-||.-..+++++.+.+|.+.|+
T Consensus 180 cirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~-----~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvT 254 (406)
T KOG2919|consen 180 CIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMD-----SKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVT 254 (406)
T ss_pred eEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCC-----CcceeeecccceeeeEecCCCCceeeecccCCCee
Confidence 9999999 5664211 11 2347789999999984 46899999999999999889999999999999999
Q ss_pred EEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCC-CcEEEEEeCCCCceeE-EeeecccccceeecccccCCcccccCc
Q 000743 491 KVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT-GARERVLRGTASHSMF-DHFCKGISMNSISGSVLNGNTSVSSLL 568 (1313)
Q Consensus 491 sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrT-G~lv~~L~GH~a~Vi~-~~~c~~~s~~ivSGS~l~g~~l~S~~l 568 (1313)
.++|+++|+.|++|.+- |..|-.||+|. +..+..+.+|...... +.|-. .+ .+.+++++..
T Consensus 255 hL~~~edGn~lfsGaRk-------~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDl--d~--------~~~~LasG~t 317 (406)
T KOG2919|consen 255 HLQWCEDGNKLFSGARK-------DDKILCWDIRYSRDPVYALERHVGDTNQRILFDL--DP--------KGEILASGDT 317 (406)
T ss_pred eEEeccCcCeecccccC-------CCeEEEEeehhccchhhhhhhhccCccceEEEec--CC--------CCceeeccCC
Confidence 99999999999998764 37999999997 5677888888763221 22311 11 1234444433
Q ss_pred ccccCCCcEEEEeCCcccc
Q 000743 569 LPIHEDGTFRQSQIQNDER 587 (1313)
Q Consensus 569 vs~s~DgtIr~Wdl~~~~~ 587 (1313)
||.|++||++...+
T Consensus 318 -----dG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 318 -----DGSVRVWDLKDLGN 331 (406)
T ss_pred -----CccEEEEecCCCCC
Confidence 99999999986554
No 177
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.01 E-value=5.5e-10 Score=130.74 Aligned_cols=168 Identities=18% Similarity=0.214 Sum_probs=128.4
Q ss_pred CceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEE-EecCCccEEEEEEe
Q 000743 318 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQY-FLGHTGAVLCLAAH 396 (1313)
Q Consensus 318 ~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~-L~GH~~~V~sLafs 396 (1313)
..+.+.||.+.|+|+.|..+.. .|++|+.|-.+.| ||.+.. +.++. -.||++-|.|+.|-
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~----lL~SGSDD~r~iv--Wd~~~~-------------KllhsI~TgHtaNIFsvKFv 102 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGE----LLASGSDDTRLIV--WDPFEY-------------KLLHSISTGHTANIFSVKFV 102 (758)
T ss_pred hhhhhccccceecceeecCCCC----EEeecCCcceEEe--ecchhc-------------ceeeeeecccccceeEEeee
Confidence 4567899999999976666666 3899988888888 775422 34444 36999999999999
Q ss_pred ccccCCCCCccCcEEEEEeCCCcEEEEECCC----------CceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCC
Q 000743 397 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS----------GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDF 466 (1313)
Q Consensus 397 P~~s~pDGr~~~~~LaSGS~DgtIrVWDl~t----------g~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~Dg 466 (1313)
| ..++++++||+.|+.|+++|+.. .+..+.+..|...|..++..|+++ +.|.+++.||
T Consensus 103 P-------~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P-----htfwsasEDG 170 (758)
T KOG1310|consen 103 P-------YTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP-----HTFWSASEDG 170 (758)
T ss_pred c-------cCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCC-----ceEEEecCCc
Confidence 8 23568999999999999999984 245667888999999999999842 7999999999
Q ss_pred eEEEEECCCCc-EEE------Ee-cCCC--CCcEEEEEcCCCC-EEEEEecCCCCCCCCCCEEEEEECC
Q 000743 467 SVALASLETLR-VER------MF-PGHP--NYPAKVVWDCPRG-YIACLCRDHSRTSDAVDVLFIWDVK 524 (1313)
Q Consensus 467 tV~LWDL~t~~-~l~------~l-~gH~--~~V~sVafsPdg~-~Latgs~DlsGssD~DgtIrVWDlr 524 (1313)
+++-+|++... |-. .+ ..+. -...++..+|... +|++|+.| --.++||.|
T Consensus 171 tirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsd--------pfarLYD~R 231 (758)
T KOG1310|consen 171 TIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSD--------PFARLYDRR 231 (758)
T ss_pred ceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCC--------chhhhhhhh
Confidence 99999998632 111 11 1111 2356999999876 66776554 889999964
No 178
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=98.98 E-value=3.8e-09 Score=127.01 Aligned_cols=170 Identities=16% Similarity=0.111 Sum_probs=124.3
Q ss_pred CceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEec
Q 000743 318 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 397 (1313)
Q Consensus 318 ~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP 397 (1313)
++.++.||.-+|+|+...+... .+++++......- ..+..|+..+....+.|.+|.-.|+.++|+
T Consensus 517 Ev~KLYGHGyEv~~l~~s~~gn----liASaCKS~~~eh----------AvI~lw~t~~W~~~~~L~~HsLTVT~l~FS- 581 (764)
T KOG1063|consen 517 EVHKLYGHGYEVYALAISPTGN----LIASACKSSLKEH----------AVIRLWNTANWLQVQELEGHSLTVTRLAFS- 581 (764)
T ss_pred hhHHhccCceeEEEEEecCCCC----EEeehhhhCCccc----------eEEEEEeccchhhhheecccceEEEEEEEC-
Confidence 5678889999999954444333 3666554432211 011123445556677899999999999999
Q ss_pred cccCCCCCccCcEEEEEeCCCcEEEEECCCCc----eEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEEC
Q 000743 398 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN----LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASL 473 (1313)
Q Consensus 398 ~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~----~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL 473 (1313)
||| ++|+|.|.|+++.+|...... .....+.|+..|++..|+|+ +.+|+|+|.|++|++|..
T Consensus 582 ----pdg----~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pd------e~~FaTaSRDK~VkVW~~ 647 (764)
T KOG1063|consen 582 ----PDG----RYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPD------EKYFATASRDKKVKVWEE 647 (764)
T ss_pred ----CCC----cEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcc------cceeEEecCCceEEEEec
Confidence 567 999999999999999975332 23346789999999999999 688999999999999998
Q ss_pred CCC--cEEE--EecCCCCCcEEEEEcCCC----C-EEEEEecCCCCCCCCCCEEEEEECC
Q 000743 474 ETL--RVER--MFPGHPNYPAKVVWDCPR----G-YIACLCRDHSRTSDAVDVLFIWDVK 524 (1313)
Q Consensus 474 ~t~--~~l~--~l~gH~~~V~sVafsPdg----~-~Latgs~DlsGssD~DgtIrVWDlr 524 (1313)
... +.+. ....+...|+.++|.|-. . .+++|-+. |.|.+|...
T Consensus 648 ~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~--------GeI~l~~~~ 699 (764)
T KOG1063|consen 648 PDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEK--------GEIVLWRRK 699 (764)
T ss_pred cCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecc--------cEEEEEecc
Confidence 877 4333 234577789999997732 2 45665555 999999855
No 179
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.97 E-value=1e-08 Score=113.22 Aligned_cols=167 Identities=16% Similarity=0.169 Sum_probs=124.1
Q ss_pred ccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCC
Q 000743 323 VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTA 402 (1313)
Q Consensus 323 ~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~p 402 (1313)
..+..++++ ...+.-.|+.+.+.+-|-+..| |++-.+ ..+.....|-.|...|..++|. .
T Consensus 147 s~~~aPlTS---FDWne~dp~~igtSSiDTTCTi--Wdie~~----------~~~~vkTQLIAHDKEV~DIaf~-----~ 206 (364)
T KOG0290|consen 147 SEFCAPLTS---FDWNEVDPNLIGTSSIDTTCTI--WDIETG----------VSGTVKTQLIAHDKEVYDIAFL-----K 206 (364)
T ss_pred cccCCcccc---cccccCCcceeEeecccCeEEE--EEEeec----------cccceeeEEEecCcceeEEEec-----c
Confidence 345567776 4445556778999999999999 654221 1233466788999999999997 2
Q ss_pred CCCccCcEEEEEeCCCcEEEEECCCCceEEEEe---ccCCCEEEEEECCCCCCCCCCCEEEEEeCC-CeEEEEECCCC-c
Q 000743 403 KGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMH---HHVAPVRQIILSPPQTEHPWSDCFLSVGED-FSVALASLETL-R 477 (1313)
Q Consensus 403 DGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~---gH~~~V~sV~fsPd~~~~~~g~~LaSgS~D-gtV~LWDL~t~-~ 477 (1313)
+ ..+.++|.|.||+||++|++.-+.-..+. .-..+...++|++.. -+++++-..| ..|.+.|+|.. .
T Consensus 207 ~---s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqD-----pnymATf~~dS~~V~iLDiR~P~t 278 (364)
T KOG0290|consen 207 G---SRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQD-----PNYMATFAMDSNKVVILDIRVPCT 278 (364)
T ss_pred C---ccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCC-----chHHhhhhcCCceEEEEEecCCCc
Confidence 2 46899999999999999998765332221 124567788888763 3678887766 46999999964 5
Q ss_pred EEEEecCCCCCcEEEEEcCCCC-EEEEEecCCCCCCCCCCEEEEEECCC
Q 000743 478 VERMFPGHPNYPAKVVWDCPRG-YIACLCRDHSRTSDAVDVLFIWDVKT 525 (1313)
Q Consensus 478 ~l~~l~gH~~~V~sVafsPdg~-~Latgs~DlsGssD~DgtIrVWDlrT 525 (1313)
++..+++|.+.|+.++|.|... .|.+++. |..+-+||+.+
T Consensus 279 pva~L~~H~a~VNgIaWaPhS~~hictaGD--------D~qaliWDl~q 319 (364)
T KOG0290|consen 279 PVARLRNHQASVNGIAWAPHSSSHICTAGD--------DCQALIWDLQQ 319 (364)
T ss_pred ceehhhcCcccccceEecCCCCceeeecCC--------cceEEEEeccc
Confidence 7889999999999999999876 5555443 39999999975
No 180
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=2.4e-08 Score=118.57 Aligned_cols=169 Identities=20% Similarity=0.317 Sum_probs=119.5
Q ss_pred eEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCC
Q 000743 378 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSD 457 (1313)
Q Consensus 378 ~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~ 457 (1313)
.+-..++||++.|.|+...| .| .+|+|||.||+||||.+.||.|+.++. ..+.|.||+|+|.. ..
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp-----~G----~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~-----~~ 455 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDP-----SG----EWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLS-----DL 455 (733)
T ss_pred eeeeeEeccCCeEEEEEecC-----Cc----ceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCC-----Cc
Confidence 45678899999999999985 45 899999999999999999999999987 66789999999984 24
Q ss_pred EEEEEeCCCeEEEEECCCC-------------------------------------cEEEEecCCCCCcEEEEEcCCCCE
Q 000743 458 CFLSVGEDFSVALASLETL-------------------------------------RVERMFPGHPNYPAKVVWDCPRGY 500 (1313)
Q Consensus 458 ~LaSgS~DgtV~LWDL~t~-------------------------------------~~l~~l~gH~~~V~sVafsPdg~~ 500 (1313)
+++.++.+.++.+.+..-| .-+...-.|...|..+.||..|+|
T Consensus 456 ~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDY 535 (733)
T KOG0650|consen 456 CVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDY 535 (733)
T ss_pred eeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCce
Confidence 5555555555555543222 011233357778999999999999
Q ss_pred EEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEeeecccccceeecccccCCcccccCcccccCCCcEEEE
Q 000743 501 IACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQS 580 (1313)
Q Consensus 501 Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~W 580 (1313)
|+|.+.+ +. ...|.|.++..+....-|.--.+.+..+.|.+.. +.+-++.-..||++
T Consensus 536 latV~~~--~~---~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~------------------p~lfVaTq~~vRiY 592 (733)
T KOG0650|consen 536 LATVMPD--SG---NKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSK------------------PYLFVATQRSVRIY 592 (733)
T ss_pred EEEeccC--CC---cceEEEEecccccccCchhhcCCceeEEEecCCC------------------ceEEEEeccceEEE
Confidence 9998876 22 2689999997655444444344455555554321 11222234569999
Q ss_pred eCCc
Q 000743 581 QIQN 584 (1313)
Q Consensus 581 dl~~ 584 (1313)
|+.+
T Consensus 593 dL~k 596 (733)
T KOG0650|consen 593 DLSK 596 (733)
T ss_pred ehhH
Confidence 9853
No 181
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.93 E-value=1.4e-10 Score=140.67 Aligned_cols=121 Identities=19% Similarity=0.343 Sum_probs=108.5
Q ss_pred ceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCC
Q 000743 377 HVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWS 456 (1313)
Q Consensus 377 g~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g 456 (1313)
.+.++.|.||..+|+|+.|. ..| .++++|++|..|+||..+++.++....||.+.|+.++.+.+ .
T Consensus 180 mk~ikrLlgH~naVyca~fD-----rtg----~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~------n 244 (1113)
T KOG0644|consen 180 MKNIKRLLGHRNAVYCAIFD-----RTG----RYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSN------N 244 (1113)
T ss_pred HHHHHHHHhhhhheeeeeec-----ccc----ceEeecCccceeeeeeccchhhhccCCCCccccchhccchh------h
Confidence 35567789999999999997 334 89999999999999999999999999999999999999887 4
Q ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECC
Q 000743 457 DCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 524 (1313)
Q Consensus 457 ~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlr 524 (1313)
..++++|.|..|++|-+.++.++..+.||++.|++++|+|-. +. +| ||++++||.+
T Consensus 245 ~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----ss-------s~-dgt~~~wd~r 300 (1113)
T KOG0644|consen 245 TMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SS-------SD-DGTCRIWDAR 300 (1113)
T ss_pred hhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cC-------CC-CCceEecccc
Confidence 689999999999999999999999999999999999999964 21 22 4999999987
No 182
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=98.92 E-value=6.9e-09 Score=115.92 Aligned_cols=191 Identities=16% Similarity=0.183 Sum_probs=140.0
Q ss_pred cccCCceEEEEeeeecccccCCE-EEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEecccc
Q 000743 322 FVHKEKIVSSSMVISESFYAPYA-IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVG 400 (1313)
Q Consensus 322 ~~~H~~~Vts~l~is~~~fsP~~-LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s 400 (1313)
...|..++++. -...|+|++ -+.++-...|++ |++..+ ++.-++.+-. .+--.|..+-+.|++|+|+
T Consensus 151 ~ydh~de~taA---hsL~Fs~DGeqlfaGykrcirv--Fdt~Rp----Gr~c~vy~t~-~~~k~gq~giisc~a~sP~-- 218 (406)
T KOG2919|consen 151 AYDHQDEYTAA---HSLQFSPDGEQLFAGYKRCIRV--FDTSRP----GRDCPVYTTV-TKGKFGQKGIISCFAFSPM-- 218 (406)
T ss_pred hhhhHHhhhhh---eeEEecCCCCeEeecccceEEE--eeccCC----CCCCcchhhh-hcccccccceeeeeeccCC--
Confidence 34566666662 336788886 555567899999 765322 2211111100 0112355788999999983
Q ss_pred CCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeC-CCeEEEEECCCC-cE
Q 000743 401 TAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE-DFSVALASLETL-RV 478 (1313)
Q Consensus 401 ~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~-DgtV~LWDL~t~-~~ 478 (1313)
+...++.|+.-.++-|+.-..+.++..+.+|.+.|+.+.|+++ |+.|.+|+. |-.|..||+|.. .+
T Consensus 219 ------~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~ed------Gn~lfsGaRk~dkIl~WDiR~~~~p 286 (406)
T KOG2919|consen 219 ------DSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCED------GNKLFSGARKDDKILCWDIRYSRDP 286 (406)
T ss_pred ------CCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccC------cCeecccccCCCeEEEEeehhccch
Confidence 2368999999999999999899999999999999999999999 688888874 789999999854 56
Q ss_pred EEEecCCCCCc-EEE--EEcCCCCEEEEEecCCCCCCCCCCEEEEEECCC-CcEEEEEeCCCCceeEEee
Q 000743 479 ERMFPGHPNYP-AKV--VWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT-GARERVLRGTASHSMFDHF 544 (1313)
Q Consensus 479 l~~l~gH~~~V-~sV--afsPdg~~Latgs~DlsGssD~DgtIrVWDlrT-G~lv~~L~GH~a~Vi~~~~ 544 (1313)
+..+.+|...- ..| ...|++++|++|+.| |.|++||+++ |..+.++..|...+..+.+
T Consensus 287 v~~L~rhv~~TNQRI~FDld~~~~~LasG~td--------G~V~vwdlk~~gn~~sv~~~~sd~vNgvsl 348 (406)
T KOG2919|consen 287 VYALERHVGDTNQRILFDLDPKGEILASGDTD--------GSVRVWDLKDLGNEVSVTGNYSDTVNGVSL 348 (406)
T ss_pred hhhhhhhccCccceEEEecCCCCceeeccCCC--------ccEEEEecCCCCCcccccccccccccceec
Confidence 78888886632 244 457899999987666 9999999998 8878888888776655544
No 183
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.91 E-value=1.2e-08 Score=114.90 Aligned_cols=153 Identities=18% Similarity=0.243 Sum_probs=121.2
Q ss_pred CcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEE--EEecCC
Q 000743 408 NEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVE--RMFPGH 485 (1313)
Q Consensus 408 ~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l--~~l~gH 485 (1313)
...++.+-..++|+++|..+++.+..|++|...++.+.|..+.. .+.+.|++.||+|++||+|..... ..+.+|
T Consensus 40 e~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds----~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~ 115 (376)
T KOG1188|consen 40 ETAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDS----PHGVISCSSDGTVRLWDIRSQAESARISWTQQ 115 (376)
T ss_pred ceeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCC----CCeeEEeccCCeEEEEEeecchhhhheeccCC
Confidence 45688888899999999999999999999999999999987521 578999999999999999987544 445566
Q ss_pred C-CCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcE-EEEE-eCCCCceeEEeeecccccceeecccccCCc
Q 000743 486 P-NYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR-ERVL-RGTASHSMFDHFCKGISMNSISGSVLNGNT 562 (1313)
Q Consensus 486 ~-~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~l-v~~L-~GH~a~Vi~~~~c~~~s~~ivSGS~l~g~~ 562 (1313)
+ .+..+++.+-.++.+++|.+- .+.|-.|.+||+|..+. ++.+ ..|.+.|+.+.|.+....-.++||.
T Consensus 116 ~~~~f~~ld~nck~~ii~~GtE~----~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSv----- 186 (376)
T KOG1188|consen 116 SGTPFICLDLNCKKNIIACGTEL----TRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSV----- 186 (376)
T ss_pred CCCcceEeeccCcCCeEEecccc----ccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecc-----
Confidence 5 345677777678888887653 23347999999998765 6666 5899999999887754444666664
Q ss_pred ccccCcccccCCCcEEEEeCCc
Q 000743 563 SVSSLLLPIHEDGTFRQSQIQN 584 (1313)
Q Consensus 563 l~S~~lvs~s~DgtIr~Wdl~~ 584 (1313)
||-+.+.|++.
T Consensus 187 -----------DGLvnlfD~~~ 197 (376)
T KOG1188|consen 187 -----------DGLVNLFDTKK 197 (376)
T ss_pred -----------cceEEeeecCC
Confidence 99999999874
No 184
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.89 E-value=4.4e-09 Score=114.93 Aligned_cols=152 Identities=19% Similarity=0.250 Sum_probs=115.0
Q ss_pred EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEE
Q 000743 344 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 423 (1313)
Q Consensus 344 ~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVW 423 (1313)
.++.|.++|.+.+ ||+.... ...... ...+.......|.++|.++.|.+. . ..=++|+.|..+..|
T Consensus 167 lllaGyEsghvv~--wd~S~~~-~~~~~~--~~~kv~~~~ash~qpvlsldyas~---~------~rGisgga~dkl~~~ 232 (323)
T KOG0322|consen 167 LLLAGYESGHVVI--WDLSTGD-KIIQLP--QSSKVESPNASHKQPVLSLDYASS---C------DRGISGGADDKLVMY 232 (323)
T ss_pred EEEEeccCCeEEE--EEccCCc-eeeccc--cccccccchhhccCcceeeeechh---h------cCCcCCCccccceee
Confidence 4889999999999 6643321 000000 111334456689999999999751 1 223688889999999
Q ss_pred ECCC--Cce-EE-EEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEEcCCCC
Q 000743 424 DLGS--GNL-IT-VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRG 499 (1313)
Q Consensus 424 Dl~t--g~~-l~-t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~ 499 (1313)
++.. +.+ +. ..+-..-.|..+.+-|| ++.++|+++|+.||+|+.++.+++..+..|.+.|++++|+|+.+
T Consensus 233 Sl~~s~gslq~~~e~~lknpGv~gvrIRpD------~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~ 306 (323)
T KOG0322|consen 233 SLNHSTGSLQIRKEITLKNPGVSGVRIRPD------GKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCE 306 (323)
T ss_pred eeccccCcccccceEEecCCCccceEEccC------CcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCc
Confidence 9874 332 11 12222346888999999 79999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCCCCCCEEEEEEC
Q 000743 500 YIACLCRDHSRTSDAVDVLFIWDV 523 (1313)
Q Consensus 500 ~Latgs~DlsGssD~DgtIrVWDl 523 (1313)
.++.++.| ++|.+|++
T Consensus 307 lmAaaskD--------~rISLWkL 322 (323)
T KOG0322|consen 307 LMAAASKD--------ARISLWKL 322 (323)
T ss_pred hhhhccCC--------ceEEeeec
Confidence 99998887 99999986
No 185
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.87 E-value=5.7e-08 Score=105.56 Aligned_cols=123 Identities=19% Similarity=0.282 Sum_probs=95.3
Q ss_pred CCccEEEEEEeccccCCCCCccCcE--EEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEe
Q 000743 386 HTGAVLCLAAHRMVGTAKGWSFNEV--LVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG 463 (1313)
Q Consensus 386 H~~~V~sLafsP~~s~pDGr~~~~~--LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS 463 (1313)
+.+.|.+++|+| +| +. +++|..++.|.+||++ ++.+..+. ...++.+.|+|+ |++++.++
T Consensus 58 ~~~~I~~~~WsP-----~g----~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~------G~~l~~~g 119 (194)
T PF08662_consen 58 KEGPIHDVAWSP-----NG----NEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPD------GRFLVLAG 119 (194)
T ss_pred CCCceEEEEECc-----CC----CEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCC------CCEEEEEE
Confidence 345799999995 55 44 4556678899999996 77777764 568899999999 78999887
Q ss_pred CC---CeEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEE
Q 000743 464 ED---FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV 531 (1313)
Q Consensus 464 ~D---gtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~ 531 (1313)
.+ |.+.+||+++.+.+..+. |. .++.++|+|+|++++++... .....|+.++||+. +|+++..
T Consensus 120 ~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~--~r~~~dng~~Iw~~-~G~~l~~ 185 (194)
T PF08662_consen 120 FGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTS--PRLRVDNGFKIWSF-QGRLLYK 185 (194)
T ss_pred ccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEec--cceeccccEEEEEe-cCeEeEe
Confidence 54 569999999888887775 33 47899999999999997653 12223489999998 5776654
No 186
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.87 E-value=6.9e-09 Score=123.43 Aligned_cols=171 Identities=19% Similarity=0.236 Sum_probs=125.7
Q ss_pred eecccccCCE--EEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEE
Q 000743 335 ISESFYAPYA--IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLV 412 (1313)
Q Consensus 335 is~~~fsP~~--LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~La 412 (1313)
+.+..|.|++ ++.+. +..+.+ +| ...|...++|+||++.|+|++|+ .|| ..++
T Consensus 15 i~d~afkPDGsqL~lAA-g~rlli--yD-------------~ndG~llqtLKgHKDtVycVAys-----~dG----krFA 69 (1081)
T KOG1538|consen 15 INDIAFKPDGTQLILAA-GSRLLV--YD-------------TSDGTLLQPLKGHKDTVYCVAYA-----KDG----KRFA 69 (1081)
T ss_pred hheeEECCCCceEEEec-CCEEEE--Ee-------------CCCcccccccccccceEEEEEEc-----cCC----ceec
Confidence 4457788885 55553 445555 54 45667899999999999999998 577 9999
Q ss_pred EEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEE
Q 000743 413 SGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKV 492 (1313)
Q Consensus 413 SGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sV 492 (1313)
||+.|+.|.+|.-.- +-+.++. |++.|.|+.|+|- .+.++|++- +-..+|....... ...+ ....+.++
T Consensus 70 SG~aDK~VI~W~~kl-EG~LkYS-H~D~IQCMsFNP~------~h~LasCsL-sdFglWS~~qK~V-~K~k-ss~R~~~C 138 (1081)
T KOG1538|consen 70 SGSADKSVIIWTSKL-EGILKYS-HNDAIQCMSFNPI------THQLASCSL-SDFGLWSPEQKSV-SKHK-SSSRIICC 138 (1081)
T ss_pred cCCCceeEEEecccc-cceeeec-cCCeeeEeecCch------HHHhhhcch-hhccccChhhhhH-Hhhh-hheeEEEe
Confidence 999999999998542 2233444 9999999999998 577888775 3567898764332 2222 23467899
Q ss_pred EEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEe---CCCCceeEEeeeccccc
Q 000743 493 VWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR---GTASHSMFDHFCKGISM 550 (1313)
Q Consensus 493 afsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~---GH~a~Vi~~~~c~~~s~ 550 (1313)
+|..||.|++.|-.| |||.+=+- +|+.--.++ |....|.+++||+...+
T Consensus 139 sWtnDGqylalG~~n--------GTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~ 190 (1081)
T KOG1538|consen 139 SWTNDGQYLALGMFN--------GTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGE 190 (1081)
T ss_pred eecCCCcEEEEeccC--------ceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCC
Confidence 999999999998776 99998863 555433333 67888988888875443
No 187
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=1.7e-08 Score=116.40 Aligned_cols=152 Identities=20% Similarity=0.213 Sum_probs=120.7
Q ss_pred EEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEE
Q 000743 391 LCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVAL 470 (1313)
Q Consensus 391 ~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~L 470 (1313)
.+++|+ .|| ..+++|+.||++|+|+..+...+.....|.+.|.++.|+|| |+.+++.+.| ..++
T Consensus 148 k~vaf~-----~~g----s~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~d------gk~lasig~d-~~~V 211 (398)
T KOG0771|consen 148 KVVAFN-----GDG----SKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPD------GKFLASIGAD-SARV 211 (398)
T ss_pred eEEEEc-----CCC----CEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCC------CcEEEEecCC-ceEE
Confidence 677887 455 89999999999999999888888888889999999999999 7999999999 9999
Q ss_pred EECCCCcEEEEec-------------------------------------------C-----------CCCCcEEEEEcC
Q 000743 471 ASLETLRVERMFP-------------------------------------------G-----------HPNYPAKVVWDC 496 (1313)
Q Consensus 471 WDL~t~~~l~~l~-------------------------------------------g-----------H~~~V~sVafsP 496 (1313)
|+++++.++.... + -...+++++.++
T Consensus 212 W~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~ 291 (398)
T KOG0771|consen 212 WSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD 291 (398)
T ss_pred EEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC
Confidence 9998872211000 0 012578999999
Q ss_pred CCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEE-eCCCCceeEEeeecccccceeecccccCCcccccCcccccCCC
Q 000743 497 PRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL-RGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDG 575 (1313)
Q Consensus 497 dg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L-~GH~a~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~Dg 575 (1313)
+|++++.|+.| |.|-|++..+-+.++.. +.|...|+.+.||++. ..+.+++.|.
T Consensus 292 dGkf~AlGT~d--------GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pds-----------------r~~~svSs~~ 346 (398)
T KOG0771|consen 292 DGKFLALGTMD--------GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDS-----------------RYLASVSSDN 346 (398)
T ss_pred CCcEEEEeccC--------CcEEEEEeceeeeeEeehhhheeeeeeEEEcCCc-----------------CcccccccCC
Confidence 99999998876 99999999887777655 5899999999998732 1234455677
Q ss_pred cEEEEeCC
Q 000743 576 TFRQSQIQ 583 (1313)
Q Consensus 576 tIr~Wdl~ 583 (1313)
+.++-.+.
T Consensus 347 ~~~v~~l~ 354 (398)
T KOG0771|consen 347 EAAVTKLA 354 (398)
T ss_pred ceeEEEEe
Confidence 77766653
No 188
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.87 E-value=3.5e-08 Score=123.66 Aligned_cols=141 Identities=23% Similarity=0.285 Sum_probs=119.6
Q ss_pred EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEE
Q 000743 344 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 423 (1313)
Q Consensus 344 ~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVW 423 (1313)
.+++|+.-+.|.+|+|. .+.++. .+.||.+.+.++.|+ -|| .+++|.|+|+++|+|
T Consensus 147 ~i~~gsv~~~iivW~~~--------------~dn~p~-~l~GHeG~iF~i~~s-----~dg----~~i~s~SdDRsiRlW 202 (967)
T KOG0974|consen 147 YIASGSVFGEIIVWKPH--------------EDNKPI-RLKGHEGSIFSIVTS-----LDG----RYIASVSDDRSIRLW 202 (967)
T ss_pred EEEeccccccEEEEecc--------------ccCCcc-eecccCCceEEEEEc-----cCC----cEEEEEecCcceeee
Confidence 58899999999996553 111223 789999999999997 466 999999999999999
Q ss_pred ECCCCceEE-EEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC-CcEEEEEcCCCCEE
Q 000743 424 DLGSGNLIT-VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN-YPAKVVWDCPRGYI 501 (1313)
Q Consensus 424 Dl~tg~~l~-t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~-~V~sVafsPdg~~L 501 (1313)
++++.+... +.-+|+..|+.+.|+|. .++|++.|.+.++|+.. ++.+..+.+|.. .++.++.+++...+
T Consensus 203 ~i~s~~~~~~~~fgHsaRvw~~~~~~n--------~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~ 273 (967)
T KOG0974|consen 203 PIDSREVLGCTGFGHSARVWACCFLPN--------RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIK 273 (967)
T ss_pred ecccccccCcccccccceeEEEEeccc--------eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEE
Confidence 999998766 67789999999999985 69999999999999764 566668888865 57899999999999
Q ss_pred EEEecCCCCCCCCCCEEEEEECCC
Q 000743 502 ACLCRDHSRTSDAVDVLFIWDVKT 525 (1313)
Q Consensus 502 atgs~DlsGssD~DgtIrVWDlrT 525 (1313)
+|++.| +++++||..+
T Consensus 274 vT~g~D--------s~lk~~~l~~ 289 (967)
T KOG0974|consen 274 VTGGND--------STLKLWDLNG 289 (967)
T ss_pred EeeccC--------cchhhhhhhc
Confidence 998876 9999999865
No 189
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.86 E-value=1.5e-08 Score=118.80 Aligned_cols=161 Identities=17% Similarity=0.227 Sum_probs=129.3
Q ss_pred EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEE
Q 000743 344 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 423 (1313)
Q Consensus 344 ~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVW 423 (1313)
.++..+.||.+.+ .+ +.++..+....|.+.|.|-.|+ ||| .-|+|++.||.|++|
T Consensus 77 ~~~i~s~DGkf~i--l~--------------k~~rVE~sv~AH~~A~~~gRW~-----~dG----tgLlt~GEDG~iKiW 131 (737)
T KOG1524|consen 77 TLLICSNDGRFVI--LN--------------KSARVERSISAHAAAISSGRWS-----PDG----AGLLTAGEDGVIKIW 131 (737)
T ss_pred eEEEEcCCceEEE--ec--------------ccchhhhhhhhhhhhhhhcccC-----CCC----ceeeeecCCceEEEE
Confidence 4777789999988 33 4456677788999999999998 577 789999999999999
Q ss_pred ECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEE
Q 000743 424 DLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIAC 503 (1313)
Q Consensus 424 Dl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Lat 503 (1313)
. ++|-.-.++.....+|+|++|.|+. .+.+.+.+.. +.+=.+.....+-..+.|.+-|.++.|+|..+.+++
T Consensus 132 S-rsGMLRStl~Q~~~~v~c~~W~p~S-----~~vl~c~g~h--~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~s 203 (737)
T KOG1524|consen 132 S-RSGMLRSTVVQNEESIRCARWAPNS-----NSIVFCQGGH--ISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIAS 203 (737)
T ss_pred e-ccchHHHHHhhcCceeEEEEECCCC-----CceEEecCCe--EEEeecccccceeEEeccCcEEEEeecCccccceee
Confidence 8 4666555666677899999999995 3566666543 344455555566678899999999999999999999
Q ss_pred EecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEeeec
Q 000743 504 LCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCK 546 (1313)
Q Consensus 504 gs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~ 546 (1313)
|++| -..+|||. -|+.+..-..|.-+++++.|.+
T Consensus 204 gGED--------~kfKvWD~-~G~~Lf~S~~~ey~ITSva~np 237 (737)
T KOG1524|consen 204 GGED--------FRFKIWDA-QGANLFTSAAEEYAITSVAFNP 237 (737)
T ss_pred cCCc--------eeEEeecc-cCcccccCChhccceeeeeecc
Confidence 8887 89999996 5777777788999998888865
No 190
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.84 E-value=3.6e-08 Score=116.11 Aligned_cols=150 Identities=21% Similarity=0.229 Sum_probs=114.4
Q ss_pred ceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCcc---------------ccCCceEEEEEecCCccEE
Q 000743 327 KIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASL---------------KVNSHVSRQYFLGHTGAVL 391 (1313)
Q Consensus 327 ~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~w---------------dv~tg~~~~~L~GH~~~V~ 391 (1313)
..|+|+.+++.. +..++.+..+|...+++-....+ .+...| ...+..++..+.--.+.|+
T Consensus 220 tsvT~ikWvpg~---~~~Fl~a~~sGnlyly~~~~~~~--~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in 294 (636)
T KOG2394|consen 220 SSVTCIKWVPGS---DSLFLVAHASGNLYLYDKEIVCG--ATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSIN 294 (636)
T ss_pred cceEEEEEEeCC---CceEEEEEecCceEEeecccccc--CCCCcccccCCCCeeEEeeeeccccCCccceeEecccccc
Confidence 678886555433 23567778899998853221111 010001 1111123333333345788
Q ss_pred EEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEE
Q 000743 392 CLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALA 471 (1313)
Q Consensus 392 sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LW 471 (1313)
..+|+ +|| ++|++.|.||.+||+|..+.+++..++..-+...||+|+|| |++|++|++|--|.+|
T Consensus 295 ~f~FS-----~DG----~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPD------GKyIvtGGEDDLVtVw 359 (636)
T KOG2394|consen 295 EFAFS-----PDG----KYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPD------GKYIVTGGEDDLVTVW 359 (636)
T ss_pred ceeEc-----CCC----ceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCC------ccEEEecCCcceEEEE
Confidence 88887 577 99999999999999999999999888888899999999999 8999999999999999
Q ss_pred ECCCCcEEEEecCCCCCcEEEEEcC
Q 000743 472 SLETLRVERMFPGHPNYPAKVVWDC 496 (1313)
Q Consensus 472 DL~t~~~l~~l~gH~~~V~sVafsP 496 (1313)
.+..++.+..-.||.++|..|+|+|
T Consensus 360 Sf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 360 SFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EeccceEEEeccccccceeeEeecc
Confidence 9999999999999999999999995
No 191
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.80 E-value=6.7e-08 Score=121.20 Aligned_cols=145 Identities=18% Similarity=0.196 Sum_probs=117.0
Q ss_pred CcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEE-EecCCC
Q 000743 408 NEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVER-MFPGHP 486 (1313)
Q Consensus 408 ~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~-~l~gH~ 486 (1313)
.-++++|+.-+.|.+|+..--+.-..+.||.+.|.++.++-+ |.+++|+|+|+++++|++++.+... +.-+|+
T Consensus 145 ~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~d------g~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHs 218 (967)
T KOG0974|consen 145 ELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLD------GRYIASVSDDRSIRLWPIDSREVLGCTGFGHS 218 (967)
T ss_pred EEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccC------CcEEEEEecCcceeeeecccccccCccccccc
Confidence 368999999999999998843333368999999999999998 7999999999999999999988776 667999
Q ss_pred CCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEeeecccccceeecccccCCccccc
Q 000743 487 NYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSS 566 (1313)
Q Consensus 487 ~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~ 566 (1313)
..|+.++|+|+ +++|+++| -+.++|+. +++.+.++.+|...-+--..-+......++|..
T Consensus 219 aRvw~~~~~~n--~i~t~ged--------ctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~--------- 278 (967)
T KOG0974|consen 219 ARVWACCFLPN--RIITVGED--------CTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGN--------- 278 (967)
T ss_pred ceeEEEEeccc--eeEEeccc--------eEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeecc---------
Confidence 99999999998 89998887 99999975 566667899998765443222222333555543
Q ss_pred CcccccCCCcEEEEeCCcc
Q 000743 567 LLLPIHEDGTFRQSQIQND 585 (1313)
Q Consensus 567 ~lvs~s~DgtIr~Wdl~~~ 585 (1313)
|+++|.|++...
T Consensus 279 -------Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 279 -------DSTLKLWDLNGR 290 (967)
T ss_pred -------Ccchhhhhhhcc
Confidence 999999998643
No 192
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.79 E-value=6e-08 Score=106.25 Aligned_cols=210 Identities=14% Similarity=0.072 Sum_probs=138.5
Q ss_pred CCceecccCCceEEEEeeeecccccCC-EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEe-cCCccEEEEE
Q 000743 317 DGRDDFVHKEKIVSSSMVISESFYAPY-AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFL-GHTGAVLCLA 394 (1313)
Q Consensus 317 ~~~~~~~~H~~~Vts~l~is~~~fsP~-~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~-GH~~~V~sLa 394 (1313)
++.+.++.|...|++ ..|..+ ++..|...|.+++ |.+ .+....-.++ -|+..|+.+.
T Consensus 5 dP~fvLRp~~~~v~s------~~fqa~~rL~sg~~~G~V~~--w~l-------------qt~r~~~~~r~~g~~~it~lq 63 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTS------VLFQANERLMSGLSVGIVKM--WVL-------------QTERDLPLIRLFGRLFITNLQ 63 (323)
T ss_pred CCeeEeccccchhee------hhhccchhhhcccccceEEE--EEe-------------ecCccchhhhhhccceeecee
Confidence 567888999999999 444433 5999999999999 543 2334455566 4567788877
Q ss_pred EeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceE--------------EEEeccCCCE-------------------
Q 000743 395 AHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLI--------------TVMHHHVAPV------------------- 441 (1313)
Q Consensus 395 fsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l--------------~t~~gH~~~V------------------- 441 (1313)
.-| +..+.+-+.|.++.+|++.-+..+ ..+......+
T Consensus 64 ~~p----------~d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~ 133 (323)
T KOG0322|consen 64 SIP----------NDSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDG 133 (323)
T ss_pred ecC----------CcchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhcc
Confidence 654 156889999999999999753211 1111111111
Q ss_pred ---EEEEECCCCCC------------CCCC--CEEEEEeCCCeEEEEECCCCcEEE----------EecCCC--------
Q 000743 442 ---RQIILSPPQTE------------HPWS--DCFLSVGEDFSVALASLETLRVER----------MFPGHP-------- 486 (1313)
Q Consensus 442 ---~sV~fsPd~~~------------~~~g--~~LaSgS~DgtV~LWDL~t~~~l~----------~l~gH~-------- 486 (1313)
+++...++... +..+ -+++.|-++|.|-+||+.++..+. ....|.
T Consensus 134 g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldy 213 (323)
T KOG0322|consen 134 GDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDY 213 (323)
T ss_pred CccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeee
Confidence 11222211000 0012 256778889999999998852111 111111
Q ss_pred --------------------------------------CCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcE
Q 000743 487 --------------------------------------NYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 528 (1313)
Q Consensus 487 --------------------------------------~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~l 528 (1313)
-.|..+...||++.++|++-| +.||||.-++.+.
T Consensus 214 as~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD--------~RiRVyswrtl~p 285 (323)
T KOG0322|consen 214 ASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWD--------HRIRVYSWRTLNP 285 (323)
T ss_pred chhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccC--------CcEEEEEeccCCc
Confidence 135667789999999996655 9999999999999
Q ss_pred EEEEeCCCCceeEEeeecccccceeecccccCCcccccCcccccCCCcEEEEeC
Q 000743 529 ERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 582 (1313)
Q Consensus 529 v~~L~GH~a~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl 582 (1313)
+.+++-|++.|..+.|.+. .+.+...+.|.+|-+|++
T Consensus 286 LAVLkyHsagvn~vAfspd-----------------~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 286 LAVLKYHSAGVNAVAFSPD-----------------CELMAAASKDARISLWKL 322 (323)
T ss_pred hhhhhhhhcceeEEEeCCC-----------------CchhhhccCCceEEeeec
Confidence 9999999999988877542 122334566999999986
No 193
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=98.76 E-value=3.7e-08 Score=111.71 Aligned_cols=126 Identities=17% Similarity=0.167 Sum_probs=106.5
Q ss_pred EEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECC------CCceEEEEec-cCCCEEEEEECCCCC
Q 000743 379 SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLG------SGNLITVMHH-HVAPVRQIILSPPQT 451 (1313)
Q Consensus 379 ~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~------tg~~l~t~~g-H~~~V~sV~fsPd~~ 451 (1313)
+.+-+.+|.+.|+++.|+. +| ++|+||+.|..+++|.+. +.+++..... |.+.|.|++|...
T Consensus 48 ~qKD~~~H~GCiNAlqFS~-----N~----~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~-- 116 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSH-----ND----RFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLE-- 116 (609)
T ss_pred hhhhhhhhccccceeeecc-----CC----eEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccC--
Confidence 4566789999999999983 34 899999999999999986 5577776654 4589999999987
Q ss_pred CCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC--CCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCc
Q 000743 452 EHPWSDCFLSVGEDFSVALASLETLRVERMFPGH--PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 527 (1313)
Q Consensus 452 ~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH--~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~ 527 (1313)
...+.||+.+++|.+.|+++.+.+..+... .+.|+.+..+|..+.+++.+.+ +.|.+||.+...
T Consensus 117 ----N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~--------~~V~~~D~Rd~~ 182 (609)
T KOG4227|consen 117 ----NRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRA--------KLVSFIDNRDRQ 182 (609)
T ss_pred ----CeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecC--------ceEEEEeccCCC
Confidence 578999999999999999999998887522 3489999999999999987766 999999998743
No 194
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.74 E-value=7.3e-07 Score=111.56 Aligned_cols=167 Identities=13% Similarity=0.089 Sum_probs=111.0
Q ss_pred ceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEE---EecC----CccEEEEEEeccc
Q 000743 327 KIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQY---FLGH----TGAVLCLAAHRMV 399 (1313)
Q Consensus 327 ~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~---L~GH----~~~V~sLafsP~~ 399 (1313)
..|+.+.++.+.. -..+++|+.||.|+| |+..... | +.-+.+.. |.++ .+.-.-+.|..
T Consensus 1110 t~Vs~l~liNe~D--~aLlLtas~dGvIRI--wk~y~~~------~--~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ-- 1175 (1387)
T KOG1517|consen 1110 TRVSDLELINEQD--DALLLTASSDGVIRI--WKDYADK------W--KKPELVTAWSSLSDQLPGARGTGLVVDWQQ-- 1175 (1387)
T ss_pred Cccceeeeecccc--hhheeeeccCceEEE--ecccccc------c--CCceeEEeeccccccCccCCCCCeeeehhh--
Confidence 4677766665443 114889999999999 6532221 1 11122211 2222 22222334542
Q ss_pred cCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEecc-CCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCc-
Q 000743 400 GTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHH-VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR- 477 (1313)
Q Consensus 400 s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH-~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~- 477 (1313)
. ..+|+++|.-+.|||||.....+++.+..- ...|+++.-+-. .|+.|+.|-.||+|++||.|...
T Consensus 1176 --~-----~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~-----~gn~i~AGfaDGsvRvyD~R~a~~ 1243 (1387)
T KOG1517|consen 1176 --Q-----SGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLV-----HGNIIAAGFADGSVRVYDRRMAPP 1243 (1387)
T ss_pred --h-----CCeEEecCCeeEEEEEecccceeEeecccCCCccceeeccccc-----CCceEEEeecCCceEEeecccCCc
Confidence 1 235666666899999999988887776533 335666654333 27999999999999999998653
Q ss_pred --EEEEecCCCCC--cEEEEEcCCCCE-EEEEecCCCCCCCCCCEEEEEECCCCc
Q 000743 478 --VERMFPGHPNY--PAKVVWDCPRGY-IACLCRDHSRTSDAVDVLFIWDVKTGA 527 (1313)
Q Consensus 478 --~l~~l~gH~~~--V~sVafsPdg~~-Latgs~DlsGssD~DgtIrVWDlrTG~ 527 (1313)
.+...+.|+.. |..+.+.+.|-- |++||.| |.|++||+|...
T Consensus 1244 ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~--------G~I~~~DlR~~~ 1290 (1387)
T KOG1517|consen 1244 DSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQD--------GDIQLLDLRMSS 1290 (1387)
T ss_pred cccceeecccCCcccceeEEeecCCCcceeeeccC--------CeEEEEecccCc
Confidence 46677888877 899999887754 8887776 999999999843
No 195
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.70 E-value=4.9e-07 Score=105.31 Aligned_cols=167 Identities=11% Similarity=0.128 Sum_probs=133.2
Q ss_pred ceEEEEeeeecccccCCE--EEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCC
Q 000743 327 KIVSSSMVISESFYAPYA--IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKG 404 (1313)
Q Consensus 327 ~~Vts~l~is~~~fsP~~--LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDG 404 (1313)
+.|++ ..|+|.. +++++-||.++|+..| -+....++.+.--.-+|.+..|+| +|
T Consensus 214 ~~I~s------v~FHp~~plllvaG~d~~lrifqvD-------------Gk~N~~lqS~~l~~fPi~~a~f~p-----~G 269 (514)
T KOG2055|consen 214 GGITS------VQFHPTAPLLLVAGLDGTLRIFQVD-------------GKVNPKLQSIHLEKFPIQKAEFAP-----NG 269 (514)
T ss_pred CCceE------EEecCCCceEEEecCCCcEEEEEec-------------CccChhheeeeeccCccceeeecC-----CC
Confidence 45666 7888884 8889999999995543 133345666666677899999984 56
Q ss_pred CccCcEEEEEeCCCcEEEEECCCCce--EEEEeccC-CCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 000743 405 WSFNEVLVSGSMDCSIRIWDLGSGNL--ITVMHHHV-APVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERM 481 (1313)
Q Consensus 405 r~~~~~LaSGS~DgtIrVWDl~tg~~--l~t~~gH~-~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~ 481 (1313)
.+.++++|.-.....||+.+.+. +....++. ..+....++|+ +++|+..|..|.|.|....+++.+..
T Consensus 270 ---~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd------~~fia~~G~~G~I~lLhakT~eli~s 340 (514)
T KOG2055|consen 270 ---HSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHD------SNFIAIAGNNGHIHLLHAKTKELITS 340 (514)
T ss_pred ---ceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCC------CCeEEEcccCceEEeehhhhhhhhhe
Confidence 34899999999999999998764 44445554 35777888898 78999999999999999999999888
Q ss_pred ecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCC
Q 000743 482 FPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGT 535 (1313)
Q Consensus 482 l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH 535 (1313)
+.- .+.|..++|+.+++.|++.|.+ |.|++||++...+++.+...
T Consensus 341 ~Ki-eG~v~~~~fsSdsk~l~~~~~~--------GeV~v~nl~~~~~~~rf~D~ 385 (514)
T KOG2055|consen 341 FKI-EGVVSDFTFSSDSKELLASGGT--------GEVYVWNLRQNSCLHRFVDD 385 (514)
T ss_pred eee-ccEEeeEEEecCCcEEEEEcCC--------ceEEEEecCCcceEEEEeec
Confidence 864 4678999999999999887665 99999999999998888643
No 196
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.68 E-value=1e-06 Score=102.68 Aligned_cols=187 Identities=12% Similarity=0.122 Sum_probs=130.8
Q ss_pred EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEE
Q 000743 344 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 423 (1313)
Q Consensus 344 ~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVW 423 (1313)
.|++.+..|.|.+.. .++++.+.+++ -.+.|.+++|+ .|| ..|+..+.+|.|.+|
T Consensus 317 fia~~G~~G~I~lLh---------------akT~eli~s~K-ieG~v~~~~fs-----Sds----k~l~~~~~~GeV~v~ 371 (514)
T KOG2055|consen 317 FIAIAGNNGHIHLLH---------------AKTKELITSFK-IEGVVSDFTFS-----SDS----KELLASGGTGEVYVW 371 (514)
T ss_pred eEEEcccCceEEeeh---------------hhhhhhhheee-eccEEeeEEEe-----cCC----cEEEEEcCCceEEEE
Confidence 388888999998831 24445555544 25679999998 455 778888889999999
Q ss_pred ECCCCceEEEEeccCCCE--EEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCC------CcEEEEecCCCCCcEEEEEc
Q 000743 424 DLGSGNLITVMHHHVAPV--RQIILSPPQTEHPWSDCFLSVGEDFSVALASLET------LRVERMFPGHPNYPAKVVWD 495 (1313)
Q Consensus 424 Dl~tg~~l~t~~gH~~~V--~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t------~~~l~~l~gH~~~V~sVafs 495 (1313)
|++...++++|.. .+.| ++++.+++ +.+|++||..|.|.|||.++ .+++..+..-...|+.+.|+
T Consensus 372 nl~~~~~~~rf~D-~G~v~gts~~~S~n------g~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn 444 (514)
T KOG2055|consen 372 NLRQNSCLHRFVD-DGSVHGTSLCISLN------GSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFN 444 (514)
T ss_pred ecCCcceEEEEee-cCccceeeeeecCC------CceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeC
Confidence 9999999999984 4444 45666677 78999999999999999653 35666666666689999999
Q ss_pred CCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEeeecccccceeecccccCCcccccCccccc-CC
Q 000743 496 CPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIH-ED 574 (1313)
Q Consensus 496 Pdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s-~D 574 (1313)
|+.+.|+.++.- .+..+|+-.+.+-.....+......+..+ .|.+++++ |+ ++.+. .+
T Consensus 445 ~d~qiLAiaS~~------~knalrLVHvPS~TVFsNfP~~n~~vg~v-tc~aFSP~---sG-----------~lAvGNe~ 503 (514)
T KOG2055|consen 445 HDAQILAIASRV------KKNALRLVHVPSCTVFSNFPTSNTKVGHV-TCMAFSPN---SG-----------YLAVGNEA 503 (514)
T ss_pred cchhhhhhhhhc------cccceEEEeccceeeeccCCCCCCcccce-EEEEecCC---Cc-----------eEEeecCC
Confidence 999999876653 23789998887765555554332222111 34444442 11 12222 26
Q ss_pred CcEEEEeCC
Q 000743 575 GTFRQSQIQ 583 (1313)
Q Consensus 575 gtIr~Wdl~ 583 (1313)
|++.+|.|.
T Consensus 504 grv~l~kL~ 512 (514)
T KOG2055|consen 504 GRVHLFKLH 512 (514)
T ss_pred CceeeEeec
Confidence 799999875
No 197
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.68 E-value=8.2e-07 Score=112.72 Aligned_cols=152 Identities=16% Similarity=0.198 Sum_probs=116.2
Q ss_pred cccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCC-------CceEEEEeccCCCEEEE
Q 000743 372 LKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS-------GNLITVMHHHVAPVRQI 444 (1313)
Q Consensus 372 wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~t-------g~~l~t~~gH~~~V~sV 444 (1313)
|+. .|..+..|..|...|..++.++ +++ .+++|||.||+||+||++. .+...++....+++.++
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~----~~~----s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~v 1104 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSS----EHT----SLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKV 1104 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecC----CCC----ceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEE
Confidence 554 5678899999999999999875 343 8999999999999999873 22344555457789999
Q ss_pred EECCCCCCCCCCCEEEEEeCCCeEEEEECCCCc-------------------EEE-------------------------
Q 000743 445 ILSPPQTEHPWSDCFLSVGEDFSVALASLETLR-------------------VER------------------------- 480 (1313)
Q Consensus 445 ~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~-------------------~l~------------------------- 480 (1313)
.+.+. ++.+|.++.||.|++.+++..+ .+.
T Consensus 1105 t~~~~------~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~ 1178 (1431)
T KOG1240|consen 1105 TMCGN------GDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSW 1178 (1431)
T ss_pred EeccC------CCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEe
Confidence 99887 7899999999999999886510 000
Q ss_pred -----------EecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEe-CCCCceeEEeeec
Q 000743 481 -----------MFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR-GTASHSMFDHFCK 546 (1313)
Q Consensus 481 -----------~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~-GH~a~Vi~~~~c~ 546 (1313)
......+.|++++.+|.+++++.|... |.+-+||+|=+.++...+ +|.+.+.-+..|+
T Consensus 1179 D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~--------G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~ 1248 (1431)
T KOG1240|consen 1179 DTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSR--------GQLVLWDLRFRVPILSWEHPARAPIRHVWLCP 1248 (1431)
T ss_pred cchhhhhHHhhhcCccccceeEEEecCCceEEEEecCC--------ceEEEEEeecCceeecccCcccCCcceEEeec
Confidence 000122468999999999999997655 999999999988887775 6667777765565
No 198
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=1.2e-07 Score=109.61 Aligned_cols=133 Identities=19% Similarity=0.264 Sum_probs=107.5
Q ss_pred EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEE
Q 000743 344 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 423 (1313)
Q Consensus 344 ~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVW 423 (1313)
.+++|+.||.+|||.|. +...+.....|.+.|.++.|+ ||| ..|+|-+.| ..+||
T Consensus 158 ~latgg~dg~lRv~~~P---------------s~~t~l~e~~~~~eV~DL~FS-----~dg----k~lasig~d-~~~VW 212 (398)
T KOG0771|consen 158 KLATGGTDGTLRVWEWP---------------SMLTILEEIAHHAEVKDLDFS-----PDG----KFLASIGAD-SARVW 212 (398)
T ss_pred EeeeccccceEEEEecC---------------cchhhhhhHhhcCccccceeC-----CCC----cEEEEecCC-ceEEE
Confidence 69999999999997663 334566677899999999999 577 999999999 99999
Q ss_pred ECCCCceEEEEe-----------------------------------------cc-------------CCCEEEEEECCC
Q 000743 424 DLGSGNLITVMH-----------------------------------------HH-------------VAPVRQIILSPP 449 (1313)
Q Consensus 424 Dl~tg~~l~t~~-----------------------------------------gH-------------~~~V~sV~fsPd 449 (1313)
|.++|.++.... .| ...|.+++.+++
T Consensus 213 ~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~d 292 (398)
T KOG0771|consen 213 SVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDD 292 (398)
T ss_pred EeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCC
Confidence 999872211110 01 136788888888
Q ss_pred CCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCCcEEEEEcCCCCEEEEEecC
Q 000743 450 QTEHPWSDCFLSVGEDFSVALASLETLRVERMF-PGHPNYPAKVVWDCPRGYIACLCRD 507 (1313)
Q Consensus 450 ~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l-~gH~~~V~sVafsPdg~~Latgs~D 507 (1313)
|++++-|+.||.|.+++..+.+.++.. +.|...|+.+.|+|+.+++++.+.|
T Consensus 293 ------Gkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~ 345 (398)
T KOG0771|consen 293 ------GKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSD 345 (398)
T ss_pred ------CcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccC
Confidence 899999999999999999988887665 5788899999999999999875544
No 199
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.67 E-value=2.5e-07 Score=103.79 Aligned_cols=160 Identities=11% Similarity=0.039 Sum_probs=124.3
Q ss_pred CCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCC
Q 000743 325 KEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKG 404 (1313)
Q Consensus 325 H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDG 404 (1313)
-..+++|..+.++.. .++.+..+.++-|+.+.- .+-.+..++|..|...|++++|+|
T Consensus 9 ~~~pitchAwn~drt----~iAv~~~~~evhiy~~~~------------~~~w~~~htls~Hd~~vtgvdWap------- 65 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRT----QIAVSPNNHEVHIYSMLG------------ADLWEPAHTLSEHDKIVTGVDWAP------- 65 (361)
T ss_pred ccCceeeeeecCCCc----eEEeccCCceEEEEEecC------------CCCceeceehhhhCcceeEEeecC-------
Confidence 346778844443333 588999999999976631 112367899999999999999996
Q ss_pred CccCcEEEEEeCCCcEEEEECC-CC--ceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEE--
Q 000743 405 WSFNEVLVSGSMDCSIRIWDLG-SG--NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVE-- 479 (1313)
Q Consensus 405 r~~~~~LaSGS~DgtIrVWDl~-tg--~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l-- 479 (1313)
..+.|++|+.|..-.+|... .+ ++...+..|...+++|.|+|. ++.|+.||.-+.|.+|-++..+--
T Consensus 66 --~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~------enkFAVgSgar~isVcy~E~ENdWWV 137 (361)
T KOG1523|consen 66 --KSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPK------ENKFAVGSGARLISVCYYEQENDWWV 137 (361)
T ss_pred --CCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCc------CceEEeccCccEEEEEEEecccceeh
Confidence 23789999999999999984 33 466667779999999999999 689999999999999987643321
Q ss_pred --EEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEEC
Q 000743 480 --RMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 523 (1313)
Q Consensus 480 --~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDl 523 (1313)
+.-..+.+.|+++.|||+.-.|++||.| +..||+..
T Consensus 138 sKhikkPirStv~sldWhpnnVLlaaGs~D--------~k~rVfSa 175 (361)
T KOG1523|consen 138 SKHIKKPIRSTVTSLDWHPNNVLLAAGSTD--------GKCRVFSA 175 (361)
T ss_pred hhhhCCccccceeeeeccCCcceecccccC--------cceeEEEE
Confidence 2233456778999999999999997776 99998853
No 200
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.65 E-value=7.4e-07 Score=109.95 Aligned_cols=213 Identities=15% Similarity=0.141 Sum_probs=142.8
Q ss_pred CceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCC
Q 000743 326 EKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGW 405 (1313)
Q Consensus 326 ~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr 405 (1313)
...|+|+ .-..|+|+.++.|+-+|.|.+ ||+....... .+ ..-.....|..+|+.+.|-.. +
T Consensus 242 ~s~v~~~---~f~p~~p~ll~gG~y~GqV~l--WD~~~~~~~~------~s-~ls~~~~sh~~~v~~vvW~~~---~--- 303 (555)
T KOG1587|consen 242 PSEVTCL---KFCPFDPNLLAGGCYNGQVVL--WDLRKGSDTP------PS-GLSALEVSHSEPVTAVVWLQN---E--- 303 (555)
T ss_pred CCceeEE---EeccCCcceEEeeccCceEEE--EEccCCCCCC------Cc-ccccccccCCcCeEEEEEecc---C---
Confidence 3556663 334577788999999999999 8765442211 01 111223468999999999641 1
Q ss_pred ccCcEEEEEeCCCcEEEEECCCCce------EEEEe------ccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEE-
Q 000743 406 SFNEVLVSGSMDCSIRIWDLGSGNL------ITVMH------HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALAS- 472 (1313)
Q Consensus 406 ~~~~~LaSGS~DgtIrVWDl~tg~~------l~t~~------gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWD- 472 (1313)
.+.-++|+|.||.|+.|+++.-.. ..... .-...++++.|.|... ..|+-|+++|.|.-=+
T Consensus 304 -~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p-----~~FiVGTe~G~v~~~~r 377 (555)
T KOG1587|consen 304 -HNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDP-----NHFIVGTEEGKVYKGCR 377 (555)
T ss_pred -CCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCC-----ceEEEEcCCcEEEEEec
Confidence 125689999999999999874321 11111 1234689999999753 5788999999987633
Q ss_pred --CCCCc-----EEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECC-CCcEEEEEeCCCCceeEEee
Q 000743 473 --LETLR-----VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK-TGARERVLRGTASHSMFDHF 544 (1313)
Q Consensus 473 --L~t~~-----~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlr-TG~lv~~L~GH~a~Vi~~~~ 544 (1313)
.+... ....+..|.++|+++.++|-+..++..+.| -+++||... .-.++..+.-+.+.++.++|
T Consensus 378 ~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gD--------W~vriWs~~~~~~Pl~~~~~~~~~v~~vaW 449 (555)
T KOG1587|consen 378 KGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGD--------WTVRIWSEDVIASPLLSLDSSPDYVTDVAW 449 (555)
T ss_pred cCCcccccccccccccccccCcceEeeecCCCccceeeeecc--------ceeEeccccCCCCcchhhhhccceeeeeEE
Confidence 22221 233556778899999999988765544334 899999987 55667777788888888888
Q ss_pred ecccccceeecccccCCcccccCcccccCCCcEEEEeCCccc
Q 000743 545 CKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDE 586 (1313)
Q Consensus 545 c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~~~~ 586 (1313)
|+.-. ..++.+-.||++-+|||....
T Consensus 450 Sptrp----------------avF~~~d~~G~l~iWDLl~~~ 475 (555)
T KOG1587|consen 450 SPTRP----------------AVFATVDGDGNLDIWDLLQDD 475 (555)
T ss_pred cCcCc----------------eEEEEEcCCCceehhhhhccc
Confidence 76322 223333448999999997533
No 201
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.65 E-value=9.2e-07 Score=100.98 Aligned_cols=151 Identities=11% Similarity=0.121 Sum_probs=111.7
Q ss_pred ccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEe---cCCccEEEEEEeccccCCCCCccCcEEEE-
Q 000743 338 SFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFL---GHTGAVLCLAAHRMVGTAKGWSFNEVLVS- 413 (1313)
Q Consensus 338 ~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~---GH~~~V~sLafsP~~s~pDGr~~~~~LaS- 413 (1313)
+.+..++++..-. ..|.|++. ++.+.++++. .|...+.++..++ + ..+++-
T Consensus 93 VrmNr~RLvV~Le-e~IyIydI---------------~~MklLhTI~t~~~n~~gl~AlS~n~-----~----n~ylAyp 147 (391)
T KOG2110|consen 93 VRMNRKRLVVCLE-ESIYIYDI---------------KDMKLLHTIETTPPNPKGLCALSPNN-----A----NCYLAYP 147 (391)
T ss_pred EEEccceEEEEEc-ccEEEEec---------------ccceeehhhhccCCCccceEeeccCC-----C----CceEEec
Confidence 3344445555433 44888433 3445555543 3445566665552 1 245543
Q ss_pred Ee-CCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCe-EEEEECCCCcEEEEecCCCC--Cc
Q 000743 414 GS-MDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFS-VALASLETLRVERMFPGHPN--YP 489 (1313)
Q Consensus 414 GS-~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~Dgt-V~LWDL~t~~~l~~l~gH~~--~V 489 (1313)
++ .-|.|.+||..+-++...+..|.+++-+++|+|+ |.++||+|+.|+ ||++++.+|+.++.|+.-.- .|
T Consensus 148 ~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~------G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~I 221 (391)
T KOG2110|consen 148 GSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPD------GTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSI 221 (391)
T ss_pred CCCCCceEEEEEcccceeeeEEEecCCceeEEEECCC------CCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEE
Confidence 22 3578999999999999999999999999999999 899999999998 58999999999999975443 45
Q ss_pred EEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCc
Q 000743 490 AKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 527 (1313)
Q Consensus 490 ~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~ 527 (1313)
.+++|+|++++|.+.+.. +||+|+.+++-.
T Consensus 222 ySL~Fs~ds~~L~~sS~T--------eTVHiFKL~~~~ 251 (391)
T KOG2110|consen 222 YSLSFSPDSQFLAASSNT--------ETVHIFKLEKVS 251 (391)
T ss_pred EEEEECCCCCeEEEecCC--------CeEEEEEecccc
Confidence 799999999999886655 899999987643
No 202
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.62 E-value=7.9e-08 Score=111.73 Aligned_cols=134 Identities=16% Similarity=0.143 Sum_probs=115.4
Q ss_pred CceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCC
Q 000743 376 SHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPW 455 (1313)
Q Consensus 376 tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~ 455 (1313)
.|..+++++.|. .|..+.|-| ..-+|++++.-|.++.-|+.+|+.+..+..-.+.+..+.-+|-
T Consensus 199 ~GtElHClk~~~-~v~rLeFLP---------yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~------ 262 (545)
T KOG1272|consen 199 NGTELHCLKRHI-RVARLEFLP---------YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPY------ 262 (545)
T ss_pred CCcEEeehhhcC-chhhhcccc---------hhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCc------
Confidence 445666777664 588888886 2368899999999999999999999999888889999998887
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEe
Q 000743 456 SDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 533 (1313)
Q Consensus 456 g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~ 533 (1313)
+-.+..|...|+|.+|.....+++..+-.|.++|.+++++++|.|++|.+.| ..++|||+|+-..+.++.
T Consensus 263 NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~D--------r~~kIWDlR~~~ql~t~~ 332 (545)
T KOG1272|consen 263 NAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLD--------RKVKIWDLRNFYQLHTYR 332 (545)
T ss_pred cceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccc--------cceeEeeeccccccceee
Confidence 4688899999999999999999999999999999999999999999998877 999999999866544443
No 203
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.57 E-value=3e-07 Score=108.21 Aligned_cols=159 Identities=16% Similarity=0.163 Sum_probs=118.8
Q ss_pred eecccCCceEEEEeeeecccccCC--EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEec
Q 000743 320 DDFVHKEKIVSSSMVISESFYAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 397 (1313)
Q Consensus 320 ~~~~~H~~~Vts~l~is~~~fsP~--~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP 397 (1313)
.....|.+.+.| ..|+|+ +++++++||.|++ |+ ++|-...++.....+|.|++|.|
T Consensus 98 ~sv~AH~~A~~~------gRW~~dGtgLlt~GEDG~iKi--WS--------------rsGMLRStl~Q~~~~v~c~~W~p 155 (737)
T KOG1524|consen 98 RSISAHAAAISS------GRWSPDGAGLLTAGEDGVIKI--WS--------------RSGMLRSTVVQNEESIRCARWAP 155 (737)
T ss_pred hhhhhhhhhhhh------cccCCCCceeeeecCCceEEE--Ee--------------ccchHHHHHhhcCceeEEEEECC
Confidence 345678888888 666666 5999999999999 75 33334444555667899999986
Q ss_pred cccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCc
Q 000743 398 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR 477 (1313)
Q Consensus 398 ~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~ 477 (1313)
+. .+.+.+.+. .+.+=-+.....+-+++.|.+-|.++.|+|. .++|+||+.|-..++||- .|+
T Consensus 156 -----~S---~~vl~c~g~--h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~------s~lI~sgGED~kfKvWD~-~G~ 218 (737)
T KOG1524|consen 156 -----NS---NSIVFCQGG--HISIKPLAANSKIIRWRAHDGLVLSLSWSTQ------SNIIASGGEDFRFKIWDA-QGA 218 (737)
T ss_pred -----CC---CceEEecCC--eEEEeecccccceeEEeccCcEEEEeecCcc------ccceeecCCceeEEeecc-cCc
Confidence 22 345555443 4555555555667789999999999999998 689999999999999996 478
Q ss_pred EEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCc
Q 000743 478 VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 527 (1313)
Q Consensus 478 ~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~ 527 (1313)
.+..-..|.-++++++|+|+..|+ .++. ++.|+=.++.|.
T Consensus 219 ~Lf~S~~~ey~ITSva~npd~~~~-v~S~---------nt~R~~~p~~GS 258 (737)
T KOG1524|consen 219 NLFTSAAEEYAITSVAFNPEKDYL-LWSY---------NTARFSSPRVGS 258 (737)
T ss_pred ccccCChhccceeeeeecccccee-eeee---------eeeeecCCCccc
Confidence 888888899899999999995444 4444 466655554443
No 204
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=98.56 E-value=6.5e-07 Score=101.89 Aligned_cols=173 Identities=10% Similarity=-0.003 Sum_probs=126.1
Q ss_pred CCceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEec-CCccEEEEEE
Q 000743 317 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLG-HTGAVLCLAA 395 (1313)
Q Consensus 317 ~~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~G-H~~~V~sLaf 395 (1313)
-+...+.+|.+.|+++-+..... .|++|+.|..+++ |..-... --++.+++..... |..-|.||+|
T Consensus 47 ~~qKD~~~H~GCiNAlqFS~N~~----~L~SGGDD~~~~~--W~~de~~-------~~k~~KPI~~~~~~H~SNIF~L~F 113 (609)
T KOG4227|consen 47 FCQKDVREHTGCINALQFSHNDR----FLASGGDDMHGRV--WNVDELM-------VRKTPKPIGVMEHPHRSNIFSLEF 113 (609)
T ss_pred hhhhhhhhhccccceeeeccCCe----EEeecCCcceeee--echHHHH-------hhcCCCCceeccCccccceEEEEE
Confidence 34567889999999954444333 3999999999999 6432111 0123355655543 4488999999
Q ss_pred eccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccC---CCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEE
Q 000743 396 HRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHV---APVRQIILSPPQTEHPWSDCFLSVGEDFSVALAS 472 (1313)
Q Consensus 396 sP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~---~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWD 472 (1313)
.. ....+.||..|++|...|+.+.+.+..+. |. +.|+.+..+|. .+.|++.+.|+.|.+||
T Consensus 114 ~~---------~N~~~~SG~~~~~VI~HDiEt~qsi~V~~-~~~~~~~VY~m~~~P~------DN~~~~~t~~~~V~~~D 177 (609)
T KOG4227|consen 114 DL---------ENRFLYSGERWGTVIKHDIETKQSIYVAN-ENNNRGDVYHMDQHPT------DNTLIVVTRAKLVSFID 177 (609)
T ss_pred cc---------CCeeEecCCCcceeEeeecccceeeeeec-ccCcccceeecccCCC------CceEEEEecCceEEEEe
Confidence 73 34799999999999999999999988887 44 48999999997 68999999999999999
Q ss_pred CCCCc-EE--EEecCCCCCcEEEEEcCCCCEE-EEEecCCCCCCCCCCEEEEEECCCC
Q 000743 473 LETLR-VE--RMFPGHPNYPAKVVWDCPRGYI-ACLCRDHSRTSDAVDVLFIWDVKTG 526 (1313)
Q Consensus 473 L~t~~-~l--~~l~gH~~~V~sVafsPdg~~L-atgs~DlsGssD~DgtIrVWDlrTG 526 (1313)
.+... +. ............+.|+|....| ++.+.- +-+.+||.+..
T Consensus 178 ~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~--------~G~~~~D~R~~ 227 (609)
T KOG4227|consen 178 NRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSET--------GGPNVFDRRMQ 227 (609)
T ss_pred ccCCCCCCceeeecCCCccceeeeecCCCceeEEecccc--------CCCCceeeccc
Confidence 98765 22 1222233356789999988755 444333 77899998763
No 205
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.53 E-value=4.6e-06 Score=90.74 Aligned_cols=137 Identities=12% Similarity=0.167 Sum_probs=90.1
Q ss_pred EEEEECC-CCceEEEEec-cCCCEEEEEECCCCCCCCCCCEEEE--EeCCCeEEEEECCCCcEEEEecCCCCCcEEEEEc
Q 000743 420 IRIWDLG-SGNLITVMHH-HVAPVRQIILSPPQTEHPWSDCFLS--VGEDFSVALASLETLRVERMFPGHPNYPAKVVWD 495 (1313)
Q Consensus 420 IrVWDl~-tg~~l~t~~g-H~~~V~sV~fsPd~~~~~~g~~LaS--gS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafs 495 (1313)
..+|.++ .+.....+.- ..++|.+++|+|+ |+.|+. |..++.|.+||++ ++.+..+. ...+..+.|+
T Consensus 39 ~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~------g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~ws 109 (194)
T PF08662_consen 39 FELFYLNEKNIPVESIELKKEGPIHDVAWSPN------GNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWS 109 (194)
T ss_pred EEEEEEecCCCccceeeccCCCceEEEEECcC------CCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEEC
Confidence 4444442 2233444432 4567999999999 565543 4467899999997 67777775 4577899999
Q ss_pred CCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEeeecccccceeecccccCCcccccCcccccCCC
Q 000743 496 CPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDG 575 (1313)
Q Consensus 496 Pdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~Dg 575 (1313)
|+|++|++++.+ .. .|.+.+||+++.+.+...... .++.+.|++. +...++.. +.+ ....|.
T Consensus 110 P~G~~l~~~g~~---n~--~G~l~~wd~~~~~~i~~~~~~--~~t~~~WsPd-Gr~~~ta~--------t~~--r~~~dn 171 (194)
T PF08662_consen 110 PDGRFLVLAGFG---NL--NGDLEFWDVRKKKKISTFEHS--DATDVEWSPD-GRYLATAT--------TSP--RLRVDN 171 (194)
T ss_pred CCCCEEEEEEcc---CC--CcEEEEEECCCCEEeeccccC--cEEEEEEcCC-CCEEEEEE--------ecc--ceeccc
Confidence 999999998753 12 278999999988888776533 3456667662 11222221 111 222388
Q ss_pred cEEEEeCC
Q 000743 576 TFRQSQIQ 583 (1313)
Q Consensus 576 tIr~Wdl~ 583 (1313)
.+++|+..
T Consensus 172 g~~Iw~~~ 179 (194)
T PF08662_consen 172 GFKIWSFQ 179 (194)
T ss_pred cEEEEEec
Confidence 89999974
No 206
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.53 E-value=4.1e-06 Score=100.59 Aligned_cols=123 Identities=16% Similarity=0.241 Sum_probs=111.4
Q ss_pred CcEEEEEeCCCcEEEEECCCCceEEEEe--ccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC
Q 000743 408 NEVLVSGSMDCSIRIWDLGSGNLITVMH--HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGH 485 (1313)
Q Consensus 408 ~~~LaSGS~DgtIrVWDl~tg~~l~t~~--gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH 485 (1313)
...++=|..-|.|-+++...|+...++. .|.++|+++.++.+ -.||.|++.|..+..|+....+..+...+.
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~------~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~ 143 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQR------LGCIYSVGADLKVVYILEKEKVIIRIWKEQ 143 (541)
T ss_pred ceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccc------cCceEecCCceeEEEEecccceeeeeeccC
Confidence 4578888899999999999999988886 59999999999877 579999999999999999999999999888
Q ss_pred CCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEeeec
Q 000743 486 PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCK 546 (1313)
Q Consensus 486 ~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~ 546 (1313)
...+.+++.+||+..+++++ ++|++||+++++.+++++||.+.|....|-.
T Consensus 144 ~~~~~sl~is~D~~~l~~as----------~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~ 194 (541)
T KOG4547|consen 144 KPLVSSLCISPDGKILLTAS----------RQIKVLDIETKEVVITFTGHGSPVRTLSFTT 194 (541)
T ss_pred CCccceEEEcCCCCEEEecc----------ceEEEEEccCceEEEEecCCCcceEEEEEEE
Confidence 88899999999999999865 7899999999999999999999998776643
No 207
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.52 E-value=5.6e-06 Score=99.42 Aligned_cols=197 Identities=13% Similarity=0.104 Sum_probs=132.5
Q ss_pred CCCceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccC----C----------------------CCC
Q 000743 316 GDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERH----N----------------------SPG 369 (1313)
Q Consensus 316 ~~~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~----~----------------------~~~ 369 (1313)
+...+++.+|.+.|+|..|..+.. ++++|+.|..+.+ |..-..+ + +..
T Consensus 43 G~llqtLKgHKDtVycVAys~dGk----rFASG~aDK~VI~--W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdF 116 (1081)
T KOG1538|consen 43 GTLLQPLKGHKDTVYCVAYAKDGK----RFASGSADKSVII--WTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDF 116 (1081)
T ss_pred cccccccccccceEEEEEEccCCc----eeccCCCceeEEE--ecccccceeeeccCCeeeEeecCchHHHhhhcchhhc
Confidence 346789999999999965555544 6999999999999 5321110 0 001
Q ss_pred CccccCCceEEEEEecC--CccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEe---ccCCCEEEE
Q 000743 370 ASLKVNSHVSRQYFLGH--TGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMH---HHVAPVRQI 444 (1313)
Q Consensus 370 ~~wdv~tg~~~~~L~GH--~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~---gH~~~V~sV 444 (1313)
-.|..+... ..-| ..+|.+.+|. .|| ++++-|-.||||.+-+- +|+....+. |..++|+++
T Consensus 117 glWS~~qK~----V~K~kss~R~~~CsWt-----nDG----qylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi 182 (1081)
T KOG1538|consen 117 GLWSPEQKS----VSKHKSSSRIICCSWT-----NDG----QYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSI 182 (1081)
T ss_pred cccChhhhh----HHhhhhheeEEEeeec-----CCC----cEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEE
Confidence 123221110 1112 2345566665 566 99999999999999864 555544444 367799999
Q ss_pred EECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECC
Q 000743 445 ILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 524 (1313)
Q Consensus 445 ~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlr 524 (1313)
+|+|..+. ...+.++.+.+..|+.++.+. |+.+..-+.-...+.|+.+-|+|.|++.|+.| +.++++- |
T Consensus 183 ~~~p~sg~-G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsd--------k~L~~fT-R 251 (1081)
T KOG1538|consen 183 CWNPSSGE-GRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSD--------KQLSLFT-R 251 (1081)
T ss_pred EecCCCCC-CccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCC--------CceEEEe-e
Confidence 99998542 223688888999999999875 55554333333456799999999999997766 8999986 6
Q ss_pred CCcEEEEEeCCCCceeEEe
Q 000743 525 TGARERVLRGTASHSMFDH 543 (1313)
Q Consensus 525 TG~lv~~L~GH~a~Vi~~~ 543 (1313)
.|-.+.++......+..++
T Consensus 252 ~GvrLGTvg~~D~WIWtV~ 270 (1081)
T KOG1538|consen 252 DGVRLGTVGEQDSWIWTVQ 270 (1081)
T ss_pred cCeEEeeccccceeEEEEE
Confidence 7777777766666664443
No 208
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.49 E-value=1.8e-07 Score=108.92 Aligned_cols=168 Identities=17% Similarity=0.206 Sum_probs=126.0
Q ss_pred ccccCC--EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEe
Q 000743 338 SFYAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGS 415 (1313)
Q Consensus 338 ~~fsP~--~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS 415 (1313)
..|-|+ .|++++..|.+.- - |+.+|+.+..+..-.+.+..+.-+| . ...+-.|.
T Consensus 215 LeFLPyHfLL~~~~~~G~L~Y--~-------------DVS~GklVa~~~t~~G~~~vm~qNP----~-----NaVih~Gh 270 (545)
T KOG1272|consen 215 LEFLPYHFLLVAASEAGFLKY--Q-------------DVSTGKLVASIRTGAGRTDVMKQNP----Y-----NAVIHLGH 270 (545)
T ss_pred hcccchhheeeecccCCceEE--E-------------eechhhhhHHHHccCCccchhhcCC----c-----cceEEEcC
Confidence 456666 4677777777665 2 5677788888888888888888887 2 24888999
Q ss_pred CCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEEc
Q 000743 416 MDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWD 495 (1313)
Q Consensus 416 ~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafs 495 (1313)
..|+|-+|...+.+++.++-.|.++|.+|++.|. |++.+|.+.|+.++|||+|....+.++.. ..+...++++
T Consensus 271 snGtVSlWSP~skePLvKiLcH~g~V~siAv~~~------G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~S 343 (545)
T KOG1272|consen 271 SNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRG------GRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLS 343 (545)
T ss_pred CCceEEecCCCCcchHHHHHhcCCCcceEEECCC------CcEEeecccccceeEeeeccccccceeec-CCCccccccc
Confidence 9999999999999999999999999999999999 89999999999999999998887776654 3466788888
Q ss_pred CCCCEEEEEecCCCCCCCCCCEEEEEE-CCC--CcEEEEEeCCC--CceeEEeeec
Q 000743 496 CPRGYIACLCRDHSRTSDAVDVLFIWD-VKT--GARERVLRGTA--SHSMFDHFCK 546 (1313)
Q Consensus 496 Pdg~~Latgs~DlsGssD~DgtIrVWD-lrT--G~lv~~L~GH~--a~Vi~~~~c~ 546 (1313)
..|. |+.+-- ..|.||. .-. +....-+.-|. +.|..+.||+
T Consensus 344 qkgl-LA~~~G---------~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP 389 (545)
T KOG1272|consen 344 QKGL-LALSYG---------DHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCP 389 (545)
T ss_pred cccc-eeeecC---------CeeeeehhhhcCCCCCCcchhhhccCcccccceecc
Confidence 6653 443221 4899993 322 22222222222 3677778887
No 209
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.48 E-value=9e-06 Score=103.67 Aligned_cols=234 Identities=15% Similarity=0.103 Sum_probs=145.1
Q ss_pred CCceecccCCceEEEEeeeecc-cccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEE
Q 000743 317 DGRDDFVHKEKIVSSSMVISES-FYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAA 395 (1313)
Q Consensus 317 ~~~~~~~~H~~~Vts~l~is~~-~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLaf 395 (1313)
-.+..+..|...|..+...+.. . .+++|+.||+|++ |++..-.. +..+.++..++.--..++.++..
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s----~FvsgS~DGtVKv--W~~~k~~~------~~~s~rS~ltys~~~sr~~~vt~ 1106 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTS----LFVSGSDDGTVKV--WNLRKLEG------EGGSARSELTYSPEGSRVEKVTM 1106 (1431)
T ss_pred eEeehhhhccccccceeecCCCCc----eEEEecCCceEEE--eeehhhhc------CcceeeeeEEEeccCCceEEEEe
Confidence 3466778899888876555544 3 4999999999999 66432210 11233445555545567777776
Q ss_pred eccccCCCCCccCcEEEEEeCCCcEEEEECCCC--c-----eEE-----------EE-----------------------
Q 000743 396 HRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG--N-----LIT-----------VM----------------------- 434 (1313)
Q Consensus 396 sP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg--~-----~l~-----------t~----------------------- 434 (1313)
.+ +| +.++.|+.||.|++.+++.. + +.. .+
T Consensus 1107 ~~-----~~----~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~ 1177 (1431)
T KOG1240|consen 1107 CG-----NG----DQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVS 1177 (1431)
T ss_pred cc-----CC----CeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEE
Confidence 52 33 77888899999999988741 0 000 00
Q ss_pred --------------eccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCCcEEEEEcCCCC
Q 000743 435 --------------HHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFP-GHPNYPAKVVWDCPRG 499 (1313)
Q Consensus 435 --------------~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~-gH~~~V~sVafsPdg~ 499 (1313)
....|.|++++.+|. ++.++.|..-|.+.+||+|-+.++.... ++..+++.+..+|..+
T Consensus 1178 ~D~r~~~~~w~lk~~~~hG~vTSi~idp~------~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~ 1251 (1431)
T KOG1240|consen 1178 WDTRMRHDAWRLKNQLRHGLVTSIVIDPW------CNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYP 1251 (1431)
T ss_pred ecchhhhhHHhhhcCccccceeEEEecCC------ceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCC
Confidence 012456777777776 7899999999999999999887776543 2335777777777544
Q ss_pred ---EEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEeeeccc---ccceeecccccCCcccccCcccccC
Q 000743 500 ---YIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGI---SMNSISGSVLNGNTSVSSLLLPIHE 573 (1313)
Q Consensus 500 ---~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~~~---s~~ivSGS~l~g~~l~S~~lvs~s~ 573 (1313)
+.++++.. ..+.|.+|++.+|.+-.++-.-........+.+.. .+..+.|.. .+-....+.++...+
T Consensus 1252 ~~S~~vs~~~~------~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~-~~~~~~~~~~ltggs 1324 (1431)
T KOG1240|consen 1252 QESVSVSAGSS------SNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGIS-CGVCEKNGFLLTGGS 1324 (1431)
T ss_pred CCceEEEeccc------CCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCccccee-eecccCCceeeecCC
Confidence 55554331 23789999999998888876553333332222211 022122211 011112223344456
Q ss_pred CCcEEEEeCCc
Q 000743 574 DGTFRQSQIQN 584 (1313)
Q Consensus 574 DgtIr~Wdl~~ 584 (1313)
|..||.||..+
T Consensus 1325 d~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1325 DMKIRKWDPTR 1335 (1431)
T ss_pred ccceeeccCCC
Confidence 89999999754
No 210
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.47 E-value=1.7e-05 Score=91.01 Aligned_cols=127 Identities=15% Similarity=0.152 Sum_probs=98.9
Q ss_pred ccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEec---cCCCEEEEEECCCCCCCCCCCEEEEEe-
Q 000743 388 GAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH---HVAPVRQIILSPPQTEHPWSDCFLSVG- 463 (1313)
Q Consensus 388 ~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~g---H~~~V~sV~fsPd~~~~~~g~~LaSgS- 463 (1313)
..|.++.++. +.|+.+=.+. |.|+|+++.++++++.. +...+..+.+++. +.+++--+
T Consensus 88 t~IL~VrmNr-----------~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~------n~ylAyp~s 149 (391)
T KOG2110|consen 88 TSILAVRMNR-----------KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNA------NCYLAYPGS 149 (391)
T ss_pred CceEEEEEcc-----------ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCC------CceEEecCC
Confidence 4688888862 5666666554 99999999999998764 3344555555554 34555322
Q ss_pred -CCCeEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCce
Q 000743 464 -EDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHS 539 (1313)
Q Consensus 464 -~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~V 539 (1313)
.-|.|.|||+.+.+++..+..|.+.+-+++|+++|.+|+|++.- ...|||+.+.+|+++..+..-...+
T Consensus 150 ~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeK-------GTVIRVf~v~~G~kl~eFRRG~~~~ 219 (391)
T KOG2110|consen 150 TTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEK-------GTVIRVFSVPEGQKLYEFRRGTYPV 219 (391)
T ss_pred CCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccC-------ceEEEEEEcCCccEeeeeeCCceee
Confidence 35889999999999999999999999999999999999998765 1358999999999999997544444
No 211
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.45 E-value=2.7e-06 Score=103.18 Aligned_cols=165 Identities=9% Similarity=0.103 Sum_probs=111.2
Q ss_pred ccccCC--EEEEEE-cCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEE-E
Q 000743 338 SFYAPY--AIVYGF-FSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLV-S 413 (1313)
Q Consensus 338 ~~fsP~--~LvsGs-~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~La-S 413 (1313)
..|+|+ .++++. .+|.+.|+.|+. .+++ ...+.+|...+.+..|+ ||| +.|+ +
T Consensus 253 ~~wSPDG~~La~~~~~~g~~~Iy~~d~-------------~~~~-~~~lt~~~~~~~~~~wS-----pDG----~~i~f~ 309 (429)
T PRK01742 253 PAFSPDGSRLAFASSKDGVLNIYVMGA-------------NGGT-PSQLTSGAGNNTEPSWS-----PDG----QSILFT 309 (429)
T ss_pred eeECCCCCEEEEEEecCCcEEEEEEEC-------------CCCC-eEeeccCCCCcCCEEEC-----CCC----CEEEEE
Confidence 456776 366654 688888866653 2222 34566777778889998 566 5555 4
Q ss_pred EeCCCcEEEEECCCC-ceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEE
Q 000743 414 GSMDCSIRIWDLGSG-NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKV 492 (1313)
Q Consensus 414 GS~DgtIrVWDl~tg-~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sV 492 (1313)
+..++...+|++... .....+ .+.+ ....|+|+ |+.|+.++.|+. .+||+.+++.......+ ....+
T Consensus 310 s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpD------G~~ia~~~~~~i-~~~Dl~~g~~~~lt~~~--~~~~~ 377 (429)
T PRK01742 310 SDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISAD------GKTLVMINGDNV-VKQDLTSGSTEVLSSTF--LDESP 377 (429)
T ss_pred ECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCC------CCEEEEEcCCCE-EEEECCCCCeEEecCCC--CCCCc
Confidence 446788999987532 222333 3443 45778998 788888877664 45999988765433332 23568
Q ss_pred EEcCCCCEEEEEecCCCCCCCCCCEEEEEEC--CCCcEEEEEeCCCCceeEEeee
Q 000743 493 VWDCPRGYIACLCRDHSRTSDAVDVLFIWDV--KTGARERVLRGTASHSMFDHFC 545 (1313)
Q Consensus 493 afsPdg~~Latgs~DlsGssD~DgtIrVWDl--rTG~lv~~L~GH~a~Vi~~~~c 545 (1313)
.|+|++++|+.++.+ +.+++|++ .+|...+.+.+|.+.+....|+
T Consensus 378 ~~sPdG~~i~~~s~~--------g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~ws 424 (429)
T PRK01742 378 SISPNGIMIIYSSTQ--------GLGKVLQLVSADGRFKARLPGSDGQVKFPAWS 424 (429)
T ss_pred eECCCCCEEEEEEcC--------CCceEEEEEECCCCceEEccCCCCCCCCcccC
Confidence 899999999987765 66666664 3688899999998777554444
No 212
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.40 E-value=1.4e-05 Score=92.11 Aligned_cols=197 Identities=16% Similarity=0.102 Sum_probs=139.2
Q ss_pred ccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCC
Q 000743 338 SFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD 417 (1313)
Q Consensus 338 ~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~D 417 (1313)
..+....++++-.+|.+.+ |..-.+ |..+ .+...+..| ..+..+.-+| + ....+++|+..
T Consensus 111 l~~~dg~Litc~~sG~l~~--~~~k~~--------d~hs-s~l~~la~g-~g~~~~r~~~------~--~p~Iva~GGke 170 (412)
T KOG3881|consen 111 LKLADGTLITCVSSGNLQV--RHDKSG--------DLHS-SKLIKLATG-PGLYDVRQTD------T--DPYIVATGGKE 170 (412)
T ss_pred hhhcCCEEEEEecCCcEEE--EeccCC--------cccc-ccceeeecC-CceeeeccCC------C--CCceEecCchh
Confidence 3333345888899999999 542111 1111 223333333 2344444443 1 34678889998
Q ss_pred --CcEEEEECCCCceEEEEecc---------CCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCC-cEEEEecCC
Q 000743 418 --CSIRIWDLGSGNLITVMHHH---------VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL-RVERMFPGH 485 (1313)
Q Consensus 418 --gtIrVWDl~tg~~l~t~~gH---------~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~-~~l~~l~gH 485 (1313)
..+++||++..+.+.+-+.- .-+++++.|-|... ...|+++..-+.+++||.+.+ +++..|.--
T Consensus 171 ~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~----~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~ 246 (412)
T KOG3881|consen 171 NINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSP----NYKFATITRYHQVRLYDTRHQRRPVAQFDFL 246 (412)
T ss_pred cccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCC----CceEEEEecceeEEEecCcccCcceeEeccc
Confidence 89999999987554433211 12467888887622 368999999999999999865 578888877
Q ss_pred CCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEE-EeCCCCceeEEeeecccccceeecccccCCccc
Q 000743 486 PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV-LRGTASHSMFDHFCKGISMNSISGSVLNGNTSV 564 (1313)
Q Consensus 486 ~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~-L~GH~a~Vi~~~~c~~~s~~ivSGS~l~g~~l~ 564 (1313)
..+++++...|.+++|++|..- +.+..+|.+++.+... +.|-++.+..++ |.... ..++
T Consensus 247 E~~is~~~l~p~gn~Iy~gn~~--------g~l~~FD~r~~kl~g~~~kg~tGsirsih-~hp~~-----------~~la 306 (412)
T KOG3881|consen 247 ENPISSTGLTPSGNFIYTGNTK--------GQLAKFDLRGGKLLGCGLKGITGSIRSIH-CHPTH-----------PVLA 306 (412)
T ss_pred cCcceeeeecCCCcEEEEeccc--------chhheecccCceeeccccCCccCCcceEE-EcCCC-----------ceEE
Confidence 8899999999999999997665 8999999999998876 889998887774 43222 2455
Q ss_pred ccCcccccCCCcEEEEeCC
Q 000743 565 SSLLLPIHEDGTFRQSQIQ 583 (1313)
Q Consensus 565 S~~lvs~s~DgtIr~Wdl~ 583 (1313)
+.++ |+-+|+.|++
T Consensus 307 s~GL-----DRyvRIhD~k 320 (412)
T KOG3881|consen 307 SCGL-----DRYVRIHDIK 320 (412)
T ss_pred eecc-----ceeEEEeecc
Confidence 5556 9999999986
No 213
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.37 E-value=4.3e-06 Score=94.21 Aligned_cols=172 Identities=13% Similarity=0.042 Sum_probs=130.2
Q ss_pred CCceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEe
Q 000743 317 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAH 396 (1313)
Q Consensus 317 ~~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafs 396 (1313)
....++..|...|+++.+.+... +|+++++|..-.+ |..... .+.++...|..|+..++++.|+
T Consensus 46 ~~~htls~Hd~~vtgvdWap~sn----rIvtcs~drnayV--w~~~~~----------~~WkptlvLlRiNrAAt~V~Ws 109 (361)
T KOG1523|consen 46 EPAHTLSEHDKIVTGVDWAPKSN----RIVTCSHDRNAYV--WTQPSG----------GTWKPTLVLLRINRAATCVKWS 109 (361)
T ss_pred eeceehhhhCcceeEEeecCCCC----ceeEccCCCCccc--cccCCC----------CeeccceeEEEeccceeeEeec
Confidence 34678889999999944433333 7999999999999 653211 3346677888999999999999
Q ss_pred ccccCCCCCccCcEEEEEeCCCcEEEEECCCCce----EEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEE
Q 000743 397 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNL----ITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALAS 472 (1313)
Q Consensus 397 P~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~----l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWD 472 (1313)
| ..+.++.||.-+.|.||-.+..+- .+.=+.+.+.|+++.|+|+ +-+++.||.|+.++++.
T Consensus 110 P---------~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpn------nVLlaaGs~D~k~rVfS 174 (361)
T KOG1523|consen 110 P---------KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPN------NVLLAAGSTDGKCRVFS 174 (361)
T ss_pred C---------cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCC------cceecccccCcceeEEE
Confidence 6 348999999999999998764431 2222346778999999999 57899999999999996
Q ss_pred CC-----C-------------CcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCc
Q 000743 473 LE-----T-------------LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 527 (1313)
Q Consensus 473 L~-----t-------------~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~ 527 (1313)
.- + |+.+..+....+.+..+.|+|.|..|+-.+.| +++.+=|.....
T Consensus 175 ayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hd--------s~v~~~da~~p~ 239 (361)
T KOG1523|consen 175 AYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHD--------STVSFVDAAGPS 239 (361)
T ss_pred EeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCC--------CceEEeecCCCc
Confidence 42 1 12233444556789999999999999998887 899998876553
No 214
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.31 E-value=8.8e-06 Score=97.83 Aligned_cols=143 Identities=16% Similarity=0.198 Sum_probs=117.9
Q ss_pred EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEe--cCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEE
Q 000743 344 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFL--GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIR 421 (1313)
Q Consensus 344 ~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~--GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIr 421 (1313)
.++.|...|+|.+ ++. ..++....+. +|.+.|+++.++. .-..|.|++.|+.+.
T Consensus 72 ~lvlgt~~g~v~~--ys~-------------~~g~it~~~st~~h~~~v~~~~~~~---------~~~ciyS~~ad~~v~ 127 (541)
T KOG4547|consen 72 MLVLGTPQGSVLL--YSV-------------AGGEITAKLSTDKHYGNVNEILDAQ---------RLGCIYSVGADLKVV 127 (541)
T ss_pred EEEeecCCccEEE--EEe-------------cCCeEEEEEecCCCCCcceeeeccc---------ccCceEecCCceeEE
Confidence 4899999999998 432 3345555554 7999999999873 235899999999999
Q ss_pred EEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEEcCC----
Q 000743 422 IWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCP---- 497 (1313)
Q Consensus 422 VWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafsPd---- 497 (1313)
.|+..+++.++.+.+....+.+++++|| |..+++++ ++|++||+++++.+.+|+||.++|+++.|--+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~sl~is~D------~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~ 199 (541)
T KOG4547|consen 128 YILEKEKVIIRIWKEQKPLVSSLCISPD------GKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGI 199 (541)
T ss_pred EEecccceeeeeeccCCCccceEEEcCC------CCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEecccc
Confidence 9999999999999999999999999999 78898887 79999999999999999999999999999777
Q ss_pred -CCEEEEEecCCCCCCCCCCEEEEEECCC
Q 000743 498 -RGYIACLCRDHSRTSDAVDVLFIWDVKT 525 (1313)
Q Consensus 498 -g~~Latgs~DlsGssD~DgtIrVWDlrT 525 (1313)
|.|++++. +.+.-+.+|-++.
T Consensus 200 ~G~~vLssa-------~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 200 IGKYVLSSA-------AAERGITVWVVEK 221 (541)
T ss_pred ccceeeecc-------ccccceeEEEEEc
Confidence 67777532 1225677776544
No 215
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=0.00094 Score=80.42 Aligned_cols=124 Identities=16% Similarity=0.216 Sum_probs=93.9
Q ss_pred CccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCC-
Q 000743 387 TGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGED- 465 (1313)
Q Consensus 387 ~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~D- 465 (1313)
.++|.++.|+| +| ..--++-|-+-.++-|+|++ +.++..| -.++-+++.|+|. |++++-+|-+
T Consensus 270 ~GPVhdv~W~~-----s~--~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~------g~ii~lAGFGN 333 (566)
T KOG2315|consen 270 EGPVHDVTWSP-----SG--REFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPH------GNIILLAGFGN 333 (566)
T ss_pred CCCceEEEECC-----CC--CEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCC------CCEEEEeecCC
Confidence 68999999995 34 12235567788899999985 5666665 4678899999999 7988888865
Q ss_pred --CeEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEE
Q 000743 466 --FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV 531 (1313)
Q Consensus 466 --gtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~ 531 (1313)
|.+-+||+.+.+++..+..- .-+-+.|+|||.|++|+... ----.|+.++||+. +|.++..
T Consensus 334 L~G~mEvwDv~n~K~i~~~~a~--~tt~~eW~PdGe~flTATTa--PRlrvdNg~Kiwhy-tG~~l~~ 396 (566)
T KOG2315|consen 334 LPGDMEVWDVPNRKLIAKFKAA--NTTVFEWSPDGEYFLTATTA--PRLRVDNGIKIWHY-TGSLLHE 396 (566)
T ss_pred CCCceEEEeccchhhccccccC--CceEEEEcCCCcEEEEEecc--ccEEecCCeEEEEe-cCceeeh
Confidence 78999999999988888654 34678999999999997642 01112489999997 6776543
No 216
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=7.9e-06 Score=94.11 Aligned_cols=164 Identities=13% Similarity=0.080 Sum_probs=123.0
Q ss_pred ccccCCEEEEEEcC--CcEEEEEeeccccCCCCCCccccCCceEEEEEe-cCCccEEEEEEeccccCCCCCccCcEEEEE
Q 000743 338 SFYAPYAIVYGFFS--GEIEVIQFDLFERHNSPGASLKVNSHVSRQYFL-GHTGAVLCLAAHRMVGTAKGWSFNEVLVSG 414 (1313)
Q Consensus 338 ~~fsP~~LvsGs~D--GsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~-GH~~~V~sLafsP~~s~pDGr~~~~~LaSG 414 (1313)
..-.|+.+++|+.. ..+.| |++... .+.|..+.-+. -.|. .-.-+++++.|-| + .....|+++
T Consensus 157 ~~~~p~Iva~GGke~~n~lki--wdle~~----~qiw~aKNvpn-D~L~LrVPvW~tdi~Fl~-----g--~~~~~fat~ 222 (412)
T KOG3881|consen 157 TDTDPYIVATGGKENINELKI--WDLEQS----KQIWSAKNVPN-DRLGLRVPVWITDIRFLE-----G--SPNYKFATI 222 (412)
T ss_pred CCCCCceEecCchhcccceee--eecccc----eeeeeccCCCC-ccccceeeeeeccceecC-----C--CCCceEEEE
Confidence 33345567778887 66777 654221 22332211100 0000 0012456777864 1 124789999
Q ss_pred eCCCcEEEEECCCCc-eEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEE-ecCCCCCcEEE
Q 000743 415 SMDCSIRIWDLGSGN-LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERM-FPGHPNYPAKV 492 (1313)
Q Consensus 415 S~DgtIrVWDl~tg~-~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~-l~gH~~~V~sV 492 (1313)
+.-+.+|+||++.++ ++..|.--..+|.++...|. +++++++-.-+.+..+|++.++.... +.+-.+.++++
T Consensus 223 T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~------gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsi 296 (412)
T KOG3881|consen 223 TRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPS------GNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSI 296 (412)
T ss_pred ecceeEEEecCcccCcceeEeccccCcceeeeecCC------CcEEEEecccchhheecccCceeeccccCCccCCcceE
Confidence 999999999999775 78888888889999999999 79999999999999999999998766 88999999999
Q ss_pred EEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEE
Q 000743 493 VWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARE 529 (1313)
Q Consensus 493 afsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv 529 (1313)
..||..+++++++-| ..+||+|++|..++
T Consensus 297 h~hp~~~~las~GLD--------RyvRIhD~ktrkll 325 (412)
T KOG3881|consen 297 HCHPTHPVLASCGLD--------RYVRIHDIKTRKLL 325 (412)
T ss_pred EEcCCCceEEeeccc--------eeEEEeecccchhh
Confidence 999999999998887 99999999996654
No 217
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.27 E-value=3.5e-05 Score=93.60 Aligned_cols=160 Identities=16% Similarity=0.175 Sum_probs=100.4
Q ss_pred ecccCCceEEEEeeeecccccCC--EEEEEEcC-CcEEEEEeeccccCCCCCCccccCCce--EEEEEecCCccEEEEEE
Q 000743 321 DFVHKEKIVSSSMVISESFYAPY--AIVYGFFS-GEIEVIQFDLFERHNSPGASLKVNSHV--SRQYFLGHTGAVLCLAA 395 (1313)
Q Consensus 321 ~~~~H~~~Vts~l~is~~~fsP~--~LvsGs~D-GsI~I~~wdll~~~~~~~~~wdv~tg~--~~~~L~GH~~~V~sLaf 395 (1313)
.+..|...+.+ ..|+|+ .+++.+.+ +.-.++.|++ .+++ .+..+.+|. ..++|
T Consensus 198 ~lt~~~~~v~~------p~wSPDG~~la~~s~~~~~~~i~i~dl-------------~tg~~~~l~~~~g~~---~~~~w 255 (429)
T PRK01742 198 IVNRSSQPLMS------PAWSPDGSKLAYVSFENKKSQLVVHDL-------------RSGARKVVASFRGHN---GAPAF 255 (429)
T ss_pred EeccCCCcccc------ceEcCCCCEEEEEEecCCCcEEEEEeC-------------CCCceEEEecCCCcc---CceeE
Confidence 34455566666 566666 36665543 3223333653 2332 344455554 36789
Q ss_pred eccccCCCCCccCcEEEEE-eCCCcEEEE--ECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEe-CCCeEEEE
Q 000743 396 HRMVGTAKGWSFNEVLVSG-SMDCSIRIW--DLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG-EDFSVALA 471 (1313)
Q Consensus 396 sP~~s~pDGr~~~~~LaSG-S~DgtIrVW--Dl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS-~DgtV~LW 471 (1313)
+ ||| +.|+.+ +.|+.+.|| |+.+++ ...+..|...+....|+|+ |+.|+.++ .++...||
T Consensus 256 S-----PDG----~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpD------G~~i~f~s~~~g~~~I~ 319 (429)
T PRK01742 256 S-----PDG----SRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPD------GQSILFTSDRSGSPQVY 319 (429)
T ss_pred C-----CCC----CEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCC------CCEEEEEECCCCCceEE
Confidence 8 567 666655 568876665 665665 4566667778899999999 67666554 57888888
Q ss_pred ECCCC-cEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEE
Q 000743 472 SLETL-RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 530 (1313)
Q Consensus 472 DL~t~-~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~ 530 (1313)
+++.. .....+ .+.. ....|+|+|++|+..+.+ + +.+||+.+|+...
T Consensus 320 ~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~--------~-i~~~Dl~~g~~~~ 367 (429)
T PRK01742 320 RMSASGGGASLV-GGRG--YSAQISADGKTLVMINGD--------N-VVKQDLTSGSTEV 367 (429)
T ss_pred EEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCC--------C-EEEEECCCCCeEE
Confidence 77532 222333 3443 457899999999876543 4 6669999987654
No 218
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.26 E-value=3.8e-05 Score=86.77 Aligned_cols=105 Identities=11% Similarity=0.132 Sum_probs=86.1
Q ss_pred cEEEE-EeCCCcEEEEECCCCce--EEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCe-EEEEECCCCcEEEEecC
Q 000743 409 EVLVS-GSMDCSIRIWDLGSGNL--ITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFS-VALASLETLRVERMFPG 484 (1313)
Q Consensus 409 ~~LaS-GS~DgtIrVWDl~tg~~--l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~Dgt-V~LWDL~t~~~l~~l~g 484 (1313)
.+|+- |-.-|.|.|-|+...+. -..+..|.+.|.|++.+-+ |..+||+|..|| |||||.++|+.++.++.
T Consensus 149 ~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~------Gt~vATaStkGTLIRIFdt~~g~~l~E~RR 222 (346)
T KOG2111|consen 149 SLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQ------GTLVATASTKGTLIRIFDTEDGTLLQELRR 222 (346)
T ss_pred eEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCC------ccEEEEeccCcEEEEEEEcCCCcEeeeeec
Confidence 34443 34558899999986655 4677889999999999998 799999999998 78999999999999864
Q ss_pred CC--CCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCc
Q 000743 485 HP--NYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 527 (1313)
Q Consensus 485 H~--~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~ 527 (1313)
-. ..+.+++|+|+..+|++.+.- ||++|+.++...
T Consensus 223 G~d~A~iy~iaFSp~~s~LavsSdK--------gTlHiF~l~~~~ 259 (346)
T KOG2111|consen 223 GVDRADIYCIAFSPNSSWLAVSSDK--------GTLHIFSLRDTE 259 (346)
T ss_pred CCchheEEEEEeCCCccEEEEEcCC--------CeEEEEEeecCC
Confidence 33 368999999999999986554 999999987643
No 219
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.25 E-value=1.3e-05 Score=91.54 Aligned_cols=162 Identities=14% Similarity=0.178 Sum_probs=109.9
Q ss_pred EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEec-CCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEE
Q 000743 344 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLG-HTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRI 422 (1313)
Q Consensus 344 ~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~G-H~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrV 422 (1313)
.++++..|..|+++.-+ .++...|+. -...|+|++|-| .+ ...|+.|.. +-|++
T Consensus 112 ~fava~nddvVriy~ks----------------st~pt~Lks~sQrnvtclawRP-----ls---aselavgCr-~gIci 166 (445)
T KOG2139|consen 112 AFAVATNDDVVRIYDKS----------------STCPTKLKSVSQRNVTCLAWRP-----LS---ASELAVGCR-AGICI 166 (445)
T ss_pred hhhhhccCcEEEEeccC----------------CCCCceecchhhcceeEEEecc-----CC---cceeeeeec-ceeEE
Confidence 47888899999994321 012222322 235699999986 22 246666665 45899
Q ss_pred EECCCC----c----------eEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEe-CCCeEEEEECCCCcEEEEecCCCC
Q 000743 423 WDLGSG----N----------LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG-EDFSVALASLETLRVERMFPGHPN 487 (1313)
Q Consensus 423 WDl~tg----~----------~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS-~DgtV~LWDL~t~~~l~~l~gH~~ 487 (1313)
|..... . .+.+..+| .+|+++.|.+| |..+++++ .|..|.|||..++.++.....-.+
T Consensus 167 W~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~d------gt~l~tAS~gsssi~iWdpdtg~~~pL~~~glg 239 (445)
T KOG2139|consen 167 WSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNED------GTILVTASFGSSSIMIWDPDTGQKIPLIPKGLG 239 (445)
T ss_pred EEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCC------CCEEeecccCcceEEEEcCCCCCcccccccCCC
Confidence 986521 1 12223445 68999999999 67888887 467899999999988765544556
Q ss_pred CcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEE-CCCCcEEEEEeCCCCceeEEeeec
Q 000743 488 YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD-VKTGARERVLRGTASHSMFDHFCK 546 (1313)
Q Consensus 488 ~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWD-lrTG~lv~~L~GH~a~Vi~~~~c~ 546 (1313)
.++-+.|+||+++++++.-| +..++|+ -++...++-..|.. .|....|.+
T Consensus 240 g~slLkwSPdgd~lfaAt~d--------avfrlw~e~q~wt~erw~lgsg-rvqtacWsp 290 (445)
T KOG2139|consen 240 GFSLLKWSPDGDVLFAATCD--------AVFRLWQENQSWTKERWILGSG-RVQTACWSP 290 (445)
T ss_pred ceeeEEEcCCCCEEEEeccc--------ceeeeehhcccceecceeccCC-ceeeeeecC
Confidence 78899999999999987766 9999994 44444554444443 555555544
No 220
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.22 E-value=0.0004 Score=84.53 Aligned_cols=164 Identities=15% Similarity=0.097 Sum_probs=101.6
Q ss_pred ccccCCE--EE-EEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEE
Q 000743 338 SFYAPYA--IV-YGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSG 414 (1313)
Q Consensus 338 ~~fsP~~--Lv-sGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSG 414 (1313)
..|+|++ ++ +.+.+|.-.|+.|++ .+++ ...+..|.+......|+ ||| +.|+..
T Consensus 253 ~~~SpDG~~l~~~~s~~g~~~Iy~~d~-------------~~g~-~~~lt~~~~~~~~~~~s-----pDG----~~l~f~ 309 (433)
T PRK04922 253 PSFSPDGRRLALTLSRDGNPEIYVMDL-------------GSRQ-LTRLTNHFGIDTEPTWA-----PDG----KSIYFT 309 (433)
T ss_pred ceECCCCCEEEEEEeCCCCceEEEEEC-------------CCCC-eEECccCCCCccceEEC-----CCC----CEEEEE
Confidence 4566663 44 445666645544653 2333 34455666556678888 566 666655
Q ss_pred e-CCCc--EEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCC---CeEEEEECCCCcEEEEecCCCCC
Q 000743 415 S-MDCS--IRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGED---FSVALASLETLRVERMFPGHPNY 488 (1313)
Q Consensus 415 S-~Dgt--IrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~D---gtV~LWDL~t~~~l~~l~gH~~~ 488 (1313)
+ .++. |.++|+.+++.. .+..+........|+|+ |+.|+..+.+ ..|.+||+.+++.. .+. +...
T Consensus 310 sd~~g~~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpD------G~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~ 380 (433)
T PRK04922 310 SDRGGRPQIYRVAASGGSAE-RLTFQGNYNARASVSPD------GKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSL 380 (433)
T ss_pred ECCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCC------CCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCC
Confidence 5 4454 666677777643 33334444557899999 6777665433 26999999887765 333 2224
Q ss_pred cEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCce
Q 000743 489 PAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHS 539 (1313)
Q Consensus 489 V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~V 539 (1313)
.....|+|+|++++..+.+ +..+.++++|.. |...+.+..+.+.+
T Consensus 381 ~~~p~~spdG~~i~~~s~~-----~g~~~L~~~~~~-g~~~~~l~~~~g~~ 425 (433)
T PRK04922 381 DESPSFAPNGSMVLYATRE-----GGRGVLAAVSTD-GRVRQRLVSADGEV 425 (433)
T ss_pred CCCceECCCCCEEEEEEec-----CCceEEEEEECC-CCceEEcccCCCCC
Confidence 4567999999998876654 112679999984 55566665554444
No 221
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.21 E-value=5.9e-05 Score=87.94 Aligned_cols=115 Identities=15% Similarity=0.179 Sum_probs=78.0
Q ss_pred cEEEEEEeccccCCCCCccCcEE-EEEeCCCcEEEEECCCCceEE-------EEeccCCCEEEEEECCCCCCCCCCCEEE
Q 000743 389 AVLCLAAHRMVGTAKGWSFNEVL-VSGSMDCSIRIWDLGSGNLIT-------VMHHHVAPVRQIILSPPQTEHPWSDCFL 460 (1313)
Q Consensus 389 ~V~sLafsP~~s~pDGr~~~~~L-aSGS~DgtIrVWDl~tg~~l~-------t~~gH~~~V~sV~fsPd~~~~~~g~~La 460 (1313)
...+++++ ||| +++ ++...+++|.+||+.+...+. ... .......+.|+|+ |++++
T Consensus 127 ~~~~~~~~-----p~g----~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pd------g~~ly 190 (330)
T PRK11028 127 GCHSANID-----PDN----RTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPN------QQYAY 190 (330)
T ss_pred cccEeEeC-----CCC----CEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCC------CCEEE
Confidence 35677787 455 555 666678999999998633221 111 1234678999999 67776
Q ss_pred EEeC-CCeEEEEECCC--C--cEEEEecCCC------CCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCC
Q 000743 461 SVGE-DFSVALASLET--L--RVERMFPGHP------NYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 526 (1313)
Q Consensus 461 SgS~-DgtV~LWDL~t--~--~~l~~l~gH~------~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG 526 (1313)
++.. +++|.+||++. + +.+..+..++ .....+.++|+++++++++.. +++|.+|++.+.
T Consensus 191 v~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~-------~~~I~v~~i~~~ 260 (330)
T PRK11028 191 CVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRT-------ASLISVFSVSED 260 (330)
T ss_pred EEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCC-------CCeEEEEEEeCC
Confidence 6665 99999999973 2 3344443221 123468999999999997653 389999998653
No 222
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.18 E-value=5.8e-06 Score=97.13 Aligned_cols=213 Identities=18% Similarity=0.218 Sum_probs=139.0
Q ss_pred CceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEE-EEEecCCccEEEEEEe
Q 000743 318 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSR-QYFLGHTGAVLCLAAH 396 (1313)
Q Consensus 318 ~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~-~~L~GH~~~V~sLafs 396 (1313)
....+..|.+.|+...+..... .+++|+.|..|.+|.|. .+++. ..-.||..-|.--.|-
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd----~l~SgSDD~~vv~WdW~---------------~~~~~l~f~SGH~~NvfQaKFi 194 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGD----VLASGSDDLQVVVWDWV---------------SGSPKLSFESGHCNNVFQAKFI 194 (559)
T ss_pred hhhcccCCCCccceeeecccCc----eeeccCccceEEeehhh---------------ccCcccccccccccchhhhhcc
Confidence 4567889999999944333333 59999999999997664 22333 3345888888888888
Q ss_pred ccccCCCCCccCcEEEEEeCCCcEEEEECC-CCceE--EEEeccCCCEEEEEECCCCCC---------------------
Q 000743 397 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLG-SGNLI--TVMHHHVAPVRQIILSPPQTE--------------------- 452 (1313)
Q Consensus 397 P~~s~pDGr~~~~~LaSGS~DgtIrVWDl~-tg~~l--~t~~gH~~~V~sV~fsPd~~~--------------------- 452 (1313)
| .+...-+++++.||.|++=.+. ++.+. ..+..|.++|..++.-|+...
T Consensus 195 P-------~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~p 267 (559)
T KOG1334|consen 195 P-------FSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVP 267 (559)
T ss_pred C-------CCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCc
Confidence 7 2346789999999999988765 44332 345568888888887776321
Q ss_pred -----------------------CCCCCEEEEEeCCCeEEEEECCCCcE-------------------------------
Q 000743 453 -----------------------HPWSDCFLSVGEDFSVALASLETLRV------------------------------- 478 (1313)
Q Consensus 453 -----------------------~~~g~~LaSgS~DgtV~LWDL~t~~~------------------------------- 478 (1313)
....+.++.++.|..+++||.+.-..
T Consensus 268 a~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~ 347 (559)
T KOG1334|consen 268 AEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHD 347 (559)
T ss_pred cceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCC
Confidence 01123566666666666666542100
Q ss_pred -----------------------------------E-EEecCCCCC--cEEEE-EcCCCCEEEEEecCCCCCCCCCCEEE
Q 000743 479 -----------------------------------E-RMFPGHPNY--PAKVV-WDCPRGYIACLCRDHSRTSDAVDVLF 519 (1313)
Q Consensus 479 -----------------------------------l-~~l~gH~~~--V~sVa-fsPdg~~Latgs~DlsGssD~DgtIr 519 (1313)
+ +.++||.+. |..+- |-|...|+++|+.= |.|.
T Consensus 348 ~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDC--------GhIF 419 (559)
T KOG1334|consen 348 GSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDC--------GHIF 419 (559)
T ss_pred ccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCcc--------ceEE
Confidence 0 013345432 33444 35566777776544 8999
Q ss_pred EEECCCCcEEEEEeCCCCceeEEeeecccccceeecccccCCcccccCcccccCCCcEEEEe
Q 000743 520 IWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 581 (1313)
Q Consensus 520 VWDlrTG~lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wd 581 (1313)
|||-.+++.++.+.|...-| -|.+-.|.+ ..++++++ |.-||+|-
T Consensus 420 iW~K~t~eii~~MegDr~VV----NCLEpHP~~--------PvLAsSGi-----d~DVKIWT 464 (559)
T KOG1334|consen 420 IWDKKTGEIIRFMEGDRHVV----NCLEPHPHL--------PVLASSGI-----DHDVKIWT 464 (559)
T ss_pred EEecchhHHHHHhhcccceE----eccCCCCCC--------chhhccCC-----ccceeeec
Confidence 99999999999999987644 566555531 24445555 88899997
No 223
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.14 E-value=8.3e-06 Score=99.16 Aligned_cols=281 Identities=14% Similarity=0.077 Sum_probs=166.0
Q ss_pred ccCCCccccceEEEEEecccCCCCCceeEEeecCCeeeeeeecceeeeCCCCeeeeeeccccccccccccccccCCCCCC
Q 000743 238 HVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGD 317 (1313)
Q Consensus 238 d~e~~l~W~p~vtVWsl~~~~~~~~~q~~~~g~~~~~~dWiss~l~~~~~dGi~Iwk~~~ss~~~~i~~l~~~~~~~~~~ 317 (1313)
|+..|..|..+++-|.+... |...... -..|+ ...+++..++|.+..++.+ .
T Consensus 54 ~p~~ppr~l~h~tpw~vad~------qws~h~a---~~~wi----Vsts~qkaiiwnlA~ss~~---------------a 105 (1081)
T KOG0309|consen 54 DPFTPPRWLHHITPWQVADV------QWSPHPA---KPYWI----VSTSNQKAIIWNLAKSSSN---------------A 105 (1081)
T ss_pred CCCCCceeeeccCcchhcce------ecccCCC---CceeE----EecCcchhhhhhhhcCCcc---------------c
Confidence 45677778888888855321 0000000 01232 2234444556766655442 1
Q ss_pred CceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEec
Q 000743 318 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 397 (1313)
Q Consensus 318 ~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP 397 (1313)
-...+-+|...|+. +.-..-+|+.+++.+.|-.+-. |++... ..++..+..-..+-..++|+-
T Consensus 106 Ief~lhghsraitd---~n~~~q~pdVlatcsvdt~vh~--wd~rSp------------~~p~ys~~~w~s~asqVkwny 168 (1081)
T KOG0309|consen 106 IEFVLHGHSRAITD---INFNPQHPDVLATCSVDTYVHA--WDMRSP------------HRPFYSTSSWRSAASQVKWNY 168 (1081)
T ss_pred eEEEEecCccceec---cccCCCCCcceeecccccccee--eeccCC------------CcceeeeecccccCceeeecc
Confidence 23566788888888 3333445667888888888888 765432 123333333334456778873
Q ss_pred cccCCCCCccCcEEEEEeCCCcEEEEECCCC-ceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCC
Q 000743 398 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG-NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL 476 (1313)
Q Consensus 398 ~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg-~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~ 476 (1313)
.|+ ..+ ..+..+.|++||++.| .++..+++|...|+.+.|...- -..+.+.+.|++|+.||....
T Consensus 169 ----k~p----~vl-asshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~-----~s~~~s~~~d~tvkfw~y~kS 234 (1081)
T KOG0309|consen 169 ----KDP----NVL-ASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFK-----YSEIMSSSNDGTVKFWDYSKS 234 (1081)
T ss_pred ----cCc----chh-hhccCCceEEEeccCCCcceEEecccceeeehHHHhhhh-----hhhhcccCCCCceeeeccccc
Confidence 233 444 4566778999999966 5899999999999999998752 246889999999999998754
Q ss_pred cE--EEEecCCCCCcEEEEEcCCCCEEEEEecC---CCCCCCCCCEEEEEECCCC-cEEEEEeCCCCceeEEeeeccccc
Q 000743 477 RV--ERMFPGHPNYPAKVVWDCPRGYIACLCRD---HSRTSDAVDVLFIWDVKTG-ARERVLRGTASHSMFDHFCKGISM 550 (1313)
Q Consensus 477 ~~--l~~l~gH~~~V~sVafsPdg~~Latgs~D---lsGssD~DgtIrVWDlrTG-~lv~~L~GH~a~Vi~~~~c~~~s~ 550 (1313)
.. .++.. ...+++.-++-|-|+-..+--.. ..--.+-++.-..|+..++ +.+.++.||++.|+-..|=. .
T Consensus 235 t~e~~~~vt-t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~---r 310 (1081)
T KOG0309|consen 235 TTESKRTVT-TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRK---R 310 (1081)
T ss_pred ccccceecc-ccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhh---c
Confidence 32 22332 23466777777765532221110 0000000122344555554 67899999999886544411 0
Q ss_pred ceeecccccCCcccccCcccccCCCcEEEEeCCcc
Q 000743 551 NSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQND 585 (1313)
Q Consensus 551 ~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~~~ 585 (1313)
..+.|.. -+..--|+.-++|.++|+|-+.+.
T Consensus 311 ~e~~~d~----d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 311 KECDGDY----DSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred ccccCCC----CccceeEEEeecCCceEeeeccHH
Confidence 1122222 122334677788999999998643
No 224
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=5.4e-06 Score=97.55 Aligned_cols=183 Identities=11% Similarity=0.148 Sum_probs=128.3
Q ss_pred CceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEec
Q 000743 318 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 397 (1313)
Q Consensus 318 ~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP 397 (1313)
....|.||...|.++..++... .+++++.|.++++ |.+...++ ...+..|..++..|+.+|.++.|-.
T Consensus 727 rL~nf~GH~~~iRai~AidNEN----SFiSASkDKTVKL--WSik~EgD------~~~tsaCQfTY~aHkk~i~~igfL~ 794 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNEN----SFISASKDKTVKL--WSIKPEGD------EIGTSACQFTYQAHKKPIHDIGFLA 794 (1034)
T ss_pred eeecccCcHHHhHHHHhccccc----ceeeccCCceEEE--EEeccccC------ccccceeeeEhhhccCcccceeeee
Confidence 4578999999999876665444 5899999999999 65432222 3356678999999999999999962
Q ss_pred cccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEec--cCCCEEEEEECCCCCCCCCCCEE-EEEeCCCeEEEEECC
Q 000743 398 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH--HVAPVRQIILSPPQTEHPWSDCF-LSVGEDFSVALASLE 474 (1313)
Q Consensus 398 ~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~g--H~~~V~sV~fsPd~~~~~~g~~L-aSgS~DgtV~LWDL~ 474 (1313)
| .++++ |.|+-|.+||..-|+++..+.. ..+.+..+.--|+-. .+.+ +-++...+|+++|.+
T Consensus 795 -----~----lr~i~--ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~----~~iliAgcsaeSTVKl~DaR 859 (1034)
T KOG4190|consen 795 -----D----LRSIA--SCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVD----RHILIAGCSAESTVKLFDAR 859 (1034)
T ss_pred -----c----cceee--eccCcceeecccccchhHhhhcCcccCCCceeEecccCc----chheeeeccchhhheeeecc
Confidence 1 24554 5699999999998887764431 122233333333311 2334 444778999999999
Q ss_pred CCcEEEEe-----cCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCC
Q 000743 475 TLRVERMF-----PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGT 535 (1313)
Q Consensus 475 t~~~l~~l-----~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH 535 (1313)
..+-...+ ++...-+++++..|.|++++++-.+ |+|.+-|.|+|..+..+...
T Consensus 860 sce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSn--------Gci~~LDaR~G~vINswrpm 917 (1034)
T KOG4190|consen 860 SCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSN--------GCIAILDARNGKVINSWRPM 917 (1034)
T ss_pred cccceeeEEeccCCCCchheeEEEeccCcchhhHHhcC--------CcEEEEecCCCceeccCCcc
Confidence 76533322 3444567899999999999975443 99999999999987766543
No 225
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.10 E-value=0.00024 Score=86.58 Aligned_cols=131 Identities=11% Similarity=0.112 Sum_probs=95.4
Q ss_pred eEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeC---CCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCC
Q 000743 378 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSM---DCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHP 454 (1313)
Q Consensus 378 ~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~---DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~ 454 (1313)
...+.+..|.+.+.+..|+ ||| +.|+..+. +..|.+||+.+++.. .+..+.+.+....|+|+
T Consensus 192 ~~~~~lt~~~~~v~~p~wS-----pDG----~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPD----- 256 (435)
T PRK05137 192 ANVRYLTDGSSLVLTPRFS-----PNR----QEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPD----- 256 (435)
T ss_pred CCcEEEecCCCCeEeeEEC-----CCC----CEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCC-----
Confidence 3456677888899999998 567 67776653 468999999988763 45556777889999999
Q ss_pred CCCEE-EEEeCCCe--EEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEE
Q 000743 455 WSDCF-LSVGEDFS--VALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 530 (1313)
Q Consensus 455 ~g~~L-aSgS~Dgt--V~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~ 530 (1313)
|+.+ ++.+.|+. |.+||+++++. ..+..+........|+|+|++|+..+.. +++..|++||+.+++..+
T Consensus 257 -G~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~-----~g~~~Iy~~d~~g~~~~~ 328 (435)
T PRK05137 257 -GRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDR-----SGSPQLYVMNADGSNPRR 328 (435)
T ss_pred -CCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECC-----CCCCeEEEEECCCCCeEE
Confidence 5654 56666665 77779887765 4566566666789999999999876532 112579999987766543
No 226
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.10 E-value=1e-05 Score=105.88 Aligned_cols=148 Identities=10% Similarity=0.132 Sum_probs=115.0
Q ss_pred EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEe-cCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEE
Q 000743 344 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFL-GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRI 422 (1313)
Q Consensus 344 ~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~-GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrV 422 (1313)
.-++|+.||.++++.|. .++.+.+++ +-...|+.+.|+ ..| +.+..+..||.+.+
T Consensus 2222 ~Yltgs~dgsv~~~~w~---------------~~~~v~~~rt~g~s~vtr~~f~-----~qG----nk~~i~d~dg~l~l 2277 (2439)
T KOG1064|consen 2222 YYLTGSQDGSVRMFEWG---------------HGQQVVCFRTAGNSRVTRSRFN-----HQG----NKFGIVDGDGDLSL 2277 (2439)
T ss_pred eEEecCCCceEEEEecc---------------CCCeEEEeeccCcchhhhhhhc-----ccC----CceeeeccCCceee
Confidence 47899999999997773 223344443 223788888887 345 67788889999999
Q ss_pred EECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEe---CCCeEEEEECCCC---cEEEEecCCCCCcEEEEEcC
Q 000743 423 WDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG---EDFSVALASLETL---RVERMFPGHPNYPAKVVWDC 496 (1313)
Q Consensus 423 WDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS---~DgtV~LWDL~t~---~~l~~l~gH~~~V~sVafsP 496 (1313)
|.+. .++...++.|......+.|-. ..+++++ +++.+.+||..-. .++. ..|.+.++++++-|
T Consensus 2278 ~q~~-pk~~~s~qchnk~~~Df~Fi~--------s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P 2346 (2439)
T KOG1064|consen 2278 WQAS-PKPYTSWQCHNKALSDFRFIG--------SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAP 2346 (2439)
T ss_pred cccC-CcceeccccCCccccceeeee--------hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcC
Confidence 9986 778888889999888888864 3455554 5788999996422 2344 77999999999999
Q ss_pred CCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeC
Q 000743 497 PRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 534 (1313)
Q Consensus 497 dg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~G 534 (1313)
....+++|+++ |.|++||++..++.++++.
T Consensus 2347 ~~qllisggr~--------G~v~l~D~rqrql~h~~~~ 2376 (2439)
T KOG1064|consen 2347 KHQLLISGGRK--------GEVCLFDIRQRQLRHTFQA 2376 (2439)
T ss_pred cceEEEecCCc--------CcEEEeehHHHHHHHHhhh
Confidence 99999999988 9999999999888776665
No 227
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.07 E-value=3.4e-05 Score=86.30 Aligned_cols=148 Identities=14% Similarity=0.019 Sum_probs=108.1
Q ss_pred EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEE
Q 000743 344 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 423 (1313)
Q Consensus 344 ~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVW 423 (1313)
.++++-.+|++.+..... ..-+..+..++|.-..+...|+ ..+.+++.|||+|+.+..|
T Consensus 135 ~i~vs~s~G~~~~v~~t~-------------~~le~vq~wk~He~E~Wta~f~--------~~~pnlvytGgDD~~l~~~ 193 (339)
T KOG0280|consen 135 KIFVSDSRGSISGVYETE-------------MVLEKVQTWKVHEFEAWTAKFS--------DKEPNLVYTGGDDGSLSCW 193 (339)
T ss_pred eEEEEcCCCcEEEEecce-------------eeeeecccccccceeeeeeecc--------cCCCceEEecCCCceEEEE
Confidence 477778888888643321 1113456788999999999997 3356899999999999999
Q ss_pred ECC-CCceEEE-EeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECC-CCcEEEEecCCCCCcEEEEEcCCCC-
Q 000743 424 DLG-SGNLITV-MHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE-TLRVERMFPGHPNYPAKVVWDCPRG- 499 (1313)
Q Consensus 424 Dl~-tg~~l~t-~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~-t~~~l~~l~gH~~~V~sVafsPdg~- 499 (1313)
|++ .++++.. -+.|...|.++.-+|.. +.+|++|+-|-.|++||.| .++++..-.- .+.|+.+.++|...
T Consensus 194 D~R~p~~~i~~n~kvH~~GV~SI~ss~~~-----~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v-~GGVWRi~~~p~~~~ 267 (339)
T KOG0280|consen 194 DIRIPKTFIWHNSKVHTSGVVSIYSSPPK-----PTYIATGSYDECIRVLDTRNMGKPLFKAKV-GGGVWRIKHHPEIFH 267 (339)
T ss_pred EecCCcceeeecceeeecceEEEecCCCC-----CceEEEeccccceeeeehhcccCccccCcc-ccceEEEEecchhhh
Confidence 999 4455544 56799999999988763 5799999999999999999 5677655443 36899999999654
Q ss_pred EEEEEecCCCCCCCCCCEEEEEECCCC
Q 000743 500 YIACLCRDHSRTSDAVDVLFIWDVKTG 526 (1313)
Q Consensus 500 ~Latgs~DlsGssD~DgtIrVWDlrTG 526 (1313)
.++.+|.- +-.+|-++..+
T Consensus 268 ~lL~~CMh--------~G~ki~~~~~~ 286 (339)
T KOG0280|consen 268 RLLAACMH--------NGAKILDSSDK 286 (339)
T ss_pred HHHHHHHh--------cCceEEEeccc
Confidence 33333432 34566665543
No 228
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.05 E-value=0.00011 Score=84.04 Aligned_cols=108 Identities=22% Similarity=0.344 Sum_probs=84.9
Q ss_pred EEecCCccEEEEEEeccccCCCCCccCcEEEEEe-CCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEE
Q 000743 382 YFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGS-MDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFL 460 (1313)
Q Consensus 382 ~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS-~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~La 460 (1313)
...|| ..|+++.|+ +|| ..++++| .|..|+|||..++.++.-...-.+.+.-+.|+|+ |+.|+
T Consensus 191 ~~pgh-~pVtsmqwn-----~dg----t~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPd------gd~lf 254 (445)
T KOG2139|consen 191 QDPGH-NPVTSMQWN-----EDG----TILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPD------GDVLF 254 (445)
T ss_pred eCCCC-ceeeEEEEc-----CCC----CEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCC------CCEEE
Confidence 34567 689999998 567 7888888 5679999999998876554445677899999999 79999
Q ss_pred EEeCCCeEEEEEC-CCCcEEEEecCCCCCcEEEEEcCCCCEEEEEec
Q 000743 461 SVGEDFSVALASL-ETLRVERMFPGHPNYPAKVVWDCPRGYIACLCR 506 (1313)
Q Consensus 461 SgS~DgtV~LWDL-~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~ 506 (1313)
++.-|+..++|+. ++..+++-.-+. +.|...+|+|+|.+|+-.+.
T Consensus 255 aAt~davfrlw~e~q~wt~erw~lgs-grvqtacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 255 AATCDAVFRLWQENQSWTKERWILGS-GRVQTACWSPCGSFLLFACS 300 (445)
T ss_pred EecccceeeeehhcccceecceeccC-CceeeeeecCCCCEEEEEEc
Confidence 9999999999954 444454444443 48999999999998876554
No 229
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.04 E-value=0.00043 Score=80.73 Aligned_cols=143 Identities=13% Similarity=0.109 Sum_probs=93.4
Q ss_pred EEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEE-eCCCcEEEEE
Q 000743 346 VYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSG-SMDCSIRIWD 424 (1313)
Q Consensus 346 vsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSG-S~DgtIrVWD 424 (1313)
++...++.|.+ |++... .+.+.++.+. +.+....++++ ||| ++|+.+ ..++.|.+|+
T Consensus 6 ~~~~~~~~I~~--~~~~~~----------g~l~~~~~~~-~~~~~~~l~~s-----pd~----~~lyv~~~~~~~i~~~~ 63 (330)
T PRK11028 6 IASPESQQIHV--WNLNHE----------GALTLLQVVD-VPGQVQPMVIS-----PDK----RHLYVGVRPEFRVLSYR 63 (330)
T ss_pred EEcCCCCCEEE--EEECCC----------CceeeeeEEe-cCCCCccEEEC-----CCC----CEEEEEECCCCcEEEEE
Confidence 44467899999 543110 1112445554 33456778888 455 666544 5689999999
Q ss_pred CC-CCce--EEEEeccCCCEEEEEECCCCCCCCCCCEEEEEe-CCCeEEEEECCCC----cEEEEecCCCCCcEEEEEcC
Q 000743 425 LG-SGNL--ITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG-EDFSVALASLETL----RVERMFPGHPNYPAKVVWDC 496 (1313)
Q Consensus 425 l~-tg~~--l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS-~DgtV~LWDL~t~----~~l~~l~gH~~~V~sVafsP 496 (1313)
+. +++. +.... ..+....+.|+|+ ++.+++++ .++.|.+||+++. +.+..+.+. ..+..++++|
T Consensus 64 ~~~~g~l~~~~~~~-~~~~p~~i~~~~~------g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~-~~~~~~~~~p 135 (330)
T PRK11028 64 IADDGALTFAAESP-LPGSPTHISTDHQ------GRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGL-EGCHSANIDP 135 (330)
T ss_pred ECCCCceEEeeeec-CCCCceEEEECCC------CCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCC-CcccEeEeCC
Confidence 97 4443 22222 3445678999999 67666655 5899999999742 233334333 3467889999
Q ss_pred CCCEEEEEecCCCCCCCCCCEEEEEECCC
Q 000743 497 PRGYIACLCRDHSRTSDAVDVLFIWDVKT 525 (1313)
Q Consensus 497 dg~~Latgs~DlsGssD~DgtIrVWDlrT 525 (1313)
+++++++.+.. +++|++||+.+
T Consensus 136 ~g~~l~v~~~~-------~~~v~v~d~~~ 157 (330)
T PRK11028 136 DNRTLWVPCLK-------EDRIRLFTLSD 157 (330)
T ss_pred CCCEEEEeeCC-------CCEEEEEEECC
Confidence 99999876543 48999999987
No 230
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.04 E-value=0.00028 Score=85.94 Aligned_cols=167 Identities=18% Similarity=0.195 Sum_probs=102.9
Q ss_pred cccCCceEEEEeeeecccccCC--EEEEEEcC-CcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEecc
Q 000743 322 FVHKEKIVSSSMVISESFYAPY--AIVYGFFS-GEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRM 398 (1313)
Q Consensus 322 ~~~H~~~Vts~l~is~~~fsP~--~LvsGs~D-GsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~ 398 (1313)
+..+...+.+ ..|+|+ .+++.+.+ +.-.++.|++ .+++. ..+..+.+...+..|+
T Consensus 199 lt~~~~~v~~------p~wSpDg~~la~~s~~~~~~~l~~~dl-------------~~g~~-~~l~~~~g~~~~~~~S-- 256 (433)
T PRK04922 199 ILRSAEPILS------PAWSPDGKKLAYVSFERGRSAIYVQDL-------------ATGQR-ELVASFRGINGAPSFS-- 256 (433)
T ss_pred eecCCCcccc------ccCCCCCCEEEEEecCCCCcEEEEEEC-------------CCCCE-EEeccCCCCccCceEC--
Confidence 3344455555 566666 36666533 3333433653 22332 2333444445577888
Q ss_pred ccCCCCCccCcEEEEEeCCC--cEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeC-CCe--EEEEEC
Q 000743 399 VGTAKGWSFNEVLVSGSMDC--SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE-DFS--VALASL 473 (1313)
Q Consensus 399 ~s~pDGr~~~~~LaSGS~Dg--tIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~-Dgt--V~LWDL 473 (1313)
||| ..++++.+.++ .|.+||+.+++. ..+..|........|+|+ |+.++.++. ++. +.++|+
T Consensus 257 ---pDG---~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spD------G~~l~f~sd~~g~~~iy~~dl 323 (433)
T PRK04922 257 ---PDG---RRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPD------GKSIYFTSDRGGRPQIYRVAA 323 (433)
T ss_pred ---CCC---CEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCC------CCEEEEEECCCCCceEEEEEC
Confidence 566 23445666666 599999998875 445556666678899999 677776664 444 666677
Q ss_pred CCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEE
Q 000743 474 ETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARE 529 (1313)
Q Consensus 474 ~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv 529 (1313)
.+++... +..+.......+|+|+|++|+..+.+ +.+..|++||+.+++..
T Consensus 324 ~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~~~~-----~~~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 324 SGGSAER-LTFQGNYNARASVSPDGKKIAMVHGS-----GGQYRIAVMDLSTGSVR 373 (433)
T ss_pred CCCCeEE-eecCCCCccCEEECCCCCEEEEEECC-----CCceeEEEEECCCCCeE
Confidence 7665433 32233345578999999999876543 11247999999888765
No 231
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.03 E-value=0.00022 Score=86.76 Aligned_cols=169 Identities=12% Similarity=0.111 Sum_probs=107.5
Q ss_pred ccccCCE--EEEE-EcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEE
Q 000743 338 SFYAPYA--IVYG-FFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSG 414 (1313)
Q Consensus 338 ~~fsP~~--LvsG-s~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSG 414 (1313)
..|+|++ +++. ..+|...|+.|++ ++++.. .+..+...+....|+ ||| +.|+..
T Consensus 248 ~~~SPDG~~La~~~~~~g~~~I~~~d~-------------~tg~~~-~lt~~~~~~~~~~wS-----PDG----~~I~f~ 304 (429)
T PRK03629 248 PAFSPDGSKLAFALSKTGSLNLYVMDL-------------ASGQIR-QVTDGRSNNTEPTWF-----PDS----QNLAYT 304 (429)
T ss_pred eEECCCCCEEEEEEcCCCCcEEEEEEC-------------CCCCEE-EccCCCCCcCceEEC-----CCC----CEEEEE
Confidence 4567763 5543 4566655654653 333433 344444567788898 566 666666
Q ss_pred eC-CCcEEEE--ECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCC---CeEEEEECCCCcEEEEecCCCCC
Q 000743 415 SM-DCSIRIW--DLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGED---FSVALASLETLRVERMFPGHPNY 488 (1313)
Q Consensus 415 S~-DgtIrVW--Dl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~D---gtV~LWDL~t~~~l~~l~gH~~~ 488 (1313)
+. ++...+| |+.+++. ..+..+........|+|+ |+.++..+.+ ..+.+||+.+++.. .+... ..
T Consensus 305 s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpD------G~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~ 375 (429)
T PRK03629 305 SDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSD------GKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FL 375 (429)
T ss_pred eCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCC------CCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CC
Confidence 64 3444555 6666654 344445556678899999 6777766543 35888999887654 33322 12
Q ss_pred cEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEee
Q 000743 489 PAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHF 544 (1313)
Q Consensus 489 V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~ 544 (1313)
.....|+|||++|+..+.+ +.. ..+++|++ +|...+.+.+|.+.+....|
T Consensus 376 ~~~p~~SpDG~~i~~~s~~--~~~---~~l~~~~~-~G~~~~~l~~~~~~~~~p~W 425 (429)
T PRK03629 376 DETPSIAPNGTMVIYSSSQ--GMG---SVLNLVST-DGRFKARLPATDGQVKFPAW 425 (429)
T ss_pred CCCceECCCCCEEEEEEcC--CCc---eEEEEEEC-CCCCeEECccCCCCcCCccc
Confidence 3467899999999988776 221 46889998 67777888888876644434
No 232
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.03 E-value=4.3e-05 Score=91.37 Aligned_cols=154 Identities=16% Similarity=0.181 Sum_probs=114.6
Q ss_pred EEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEE
Q 000743 345 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 424 (1313)
Q Consensus 345 LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWD 424 (1313)
|++++...+|.- ++ .+.|.-+..|.-..+.++++..++. ..+|+.|+.||.|-.||
T Consensus 148 ly~~gsg~evYR--lN-------------LEqGrfL~P~~~~~~~lN~v~in~~---------hgLla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 148 LYLVGSGSEVYR--LN-------------LEQGRFLNPFETDSGELNVVSINEE---------HGLLACGTEDGVVEFWD 203 (703)
T ss_pred EEEeecCcceEE--EE-------------ccccccccccccccccceeeeecCc---------cceEEecccCceEEEec
Confidence 566655555544 43 3556667777777789999999862 35899999999999999
Q ss_pred CCCCceEEEEec------cCC-----CEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCCcEEE
Q 000743 425 LGSGNLITVMHH------HVA-----PVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFP-GHPNYPAKV 492 (1313)
Q Consensus 425 l~tg~~l~t~~g------H~~-----~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~-gH~~~V~sV 492 (1313)
.++...+.++.. |.+ .|+++.|..+ |-.++.|..+|.|.|||+++.+++..-. +...++..+
T Consensus 204 pR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~------gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l 277 (703)
T KOG2321|consen 204 PRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDD------GLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKL 277 (703)
T ss_pred chhhhhheeeecccccCCCccccccCcceEEEecCC------ceeEEeeccCCcEEEEEcccCCceeecccCCccceeee
Confidence 998776665532 333 3999999987 6789999999999999999998875432 223467899
Q ss_pred EEcCC--CCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCC
Q 000743 493 VWDCP--RGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTAS 537 (1313)
Q Consensus 493 afsPd--g~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a 537 (1313)
.|.+. ++.+++. | ...++|||-.+|+....+.-...
T Consensus 278 ~~~~~~~q~~v~S~--D-------k~~~kiWd~~~Gk~~asiEpt~~ 315 (703)
T KOG2321|consen 278 DWQDTDQQNKVVSM--D-------KRILKIWDECTGKPMASIEPTSD 315 (703)
T ss_pred cccccCCCceEEec--c-------hHHhhhcccccCCceeeccccCC
Confidence 99776 4456542 2 27899999999998877765443
No 233
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.02 E-value=0.00036 Score=84.98 Aligned_cols=167 Identities=16% Similarity=0.132 Sum_probs=108.0
Q ss_pred eecccCCceEEEEeeeecccccCC--EEEEEEc-CCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEe
Q 000743 320 DDFVHKEKIVSSSMVISESFYAPY--AIVYGFF-SGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAH 396 (1313)
Q Consensus 320 ~~~~~H~~~Vts~l~is~~~fsP~--~LvsGs~-DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafs 396 (1313)
..+..|...+.+ ..|+|+ .|++.+. +|.-.++.|++ .+++. ..+..+.+.+.+..|+
T Consensus 195 ~~lt~~~~~v~~------p~wSpDG~~lay~s~~~g~~~i~~~dl-------------~~g~~-~~l~~~~g~~~~~~~S 254 (435)
T PRK05137 195 RYLTDGSSLVLT------PRFSPNRQEITYMSYANGRPRVYLLDL-------------ETGQR-ELVGNFPGMTFAPRFS 254 (435)
T ss_pred EEEecCCCCeEe------eEECCCCCEEEEEEecCCCCEEEEEEC-------------CCCcE-EEeecCCCcccCcEEC
Confidence 345566667777 556665 4666543 33334444653 33333 3455667778888898
Q ss_pred ccccCCCCCccCcEEEEEeCCCc--EEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeC-C--CeEEEE
Q 000743 397 RMVGTAKGWSFNEVLVSGSMDCS--IRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE-D--FSVALA 471 (1313)
Q Consensus 397 P~~s~pDGr~~~~~LaSGS~Dgt--IrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~-D--gtV~LW 471 (1313)
||| ..++++.+.|+. |.+||+.+++. ..+..+.+......|+|+ |+.++..+. + ..|.+|
T Consensus 255 -----PDG---~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spD------G~~i~f~s~~~g~~~Iy~~ 319 (435)
T PRK05137 255 -----PDG---RKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPD------GSQIVFESDRSGSPQLYVM 319 (435)
T ss_pred -----CCC---CEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCC------CCEEEEEECCCCCCeEEEE
Confidence 566 234567777765 77779888765 456667777788999999 677776653 3 368888
Q ss_pred ECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCc
Q 000743 472 SLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 527 (1313)
Q Consensus 472 DL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~ 527 (1313)
|+..++.. .+..+...+....|+|+|++|+..+.+ .++..|++||..++.
T Consensus 320 d~~g~~~~-~lt~~~~~~~~~~~SpdG~~ia~~~~~-----~~~~~i~~~d~~~~~ 369 (435)
T PRK05137 320 NADGSNPR-RISFGGGRYSTPVWSPRGDLIAFTKQG-----GGQFSIGVMKPDGSG 369 (435)
T ss_pred ECCCCCeE-EeecCCCcccCeEECCCCCEEEEEEcC-----CCceEEEEEECCCCc
Confidence 98766543 343344456678999999999876643 112579999986654
No 234
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.00 E-value=0.00018 Score=81.50 Aligned_cols=100 Identities=21% Similarity=0.424 Sum_probs=80.7
Q ss_pred EEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCc-EEEEECC
Q 000743 348 GFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCS-IRIWDLG 426 (1313)
Q Consensus 348 Gs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~Dgt-IrVWDl~ 426 (1313)
|..-|.|.|..+.. . +.+ .-....+|...|.|++.+ .+| ..++|+|..|| |||||..
T Consensus 155 g~k~GqvQi~dL~~--~----------~~~-~p~~I~AH~s~Iacv~Ln-----~~G----t~vATaStkGTLIRIFdt~ 212 (346)
T KOG2111|consen 155 GFKTGQVQIVDLAS--T----------KPN-APSIINAHDSDIACVALN-----LQG----TLVATASTKGTLIRIFDTE 212 (346)
T ss_pred CCccceEEEEEhhh--c----------CcC-CceEEEcccCceeEEEEc-----CCc----cEEEEeccCcEEEEEEEcC
Confidence 45568999954421 1 111 346788999999999997 566 99999999997 6899999
Q ss_pred CCceEEEEec--cCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCC
Q 000743 427 SGNLITVMHH--HVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET 475 (1313)
Q Consensus 427 tg~~l~t~~g--H~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t 475 (1313)
+|+.+..++. ....|++++|+|+ ..+++..|+-||+.++.++.
T Consensus 213 ~g~~l~E~RRG~d~A~iy~iaFSp~------~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 213 DGTLLQELRRGVDRADIYCIAFSPN------SSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CCcEeeeeecCCchheEEEEEeCCC------ccEEEEEcCCCeEEEEEeec
Confidence 9999999874 2347999999999 68999999999999999875
No 235
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=97.99 E-value=0.00013 Score=91.15 Aligned_cols=169 Identities=20% Similarity=0.277 Sum_probs=123.7
Q ss_pred cCCceEEEEeeeecccccCC--EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccC
Q 000743 324 HKEKIVSSSMVISESFYAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGT 401 (1313)
Q Consensus 324 ~H~~~Vts~l~is~~~fsP~--~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~ 401 (1313)
.|...++| ..++|. .+++|-.||.|.+ |.-+... ........|.=|.+.|+++.|+
T Consensus 203 ~Htf~~t~------~~~spn~~~~Aa~d~dGrI~v--w~d~~~~---------~~~~t~t~lHWH~~~V~~L~fS----- 260 (792)
T KOG1963|consen 203 HHTFNITC------VALSPNERYLAAGDSDGRILV--WRDFGSS---------DDSETCTLLHWHHDEVNSLSFS----- 260 (792)
T ss_pred hhccccee------EEeccccceEEEeccCCcEEE--Eeccccc---------cccccceEEEecccccceeEEe-----
Confidence 45555666 556666 4888888999888 6432210 1113356777899999999998
Q ss_pred CCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 000743 402 AKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERM 481 (1313)
Q Consensus 402 pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~ 481 (1313)
+|| .+|+||+..+.+-+|.+.+++ .+-+..-.++|..+.++|+ +++.+....|+.|.+....+.....+
T Consensus 261 ~~G----~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~d------s~~~sl~~~DNqI~li~~~dl~~k~t 329 (792)
T KOG1963|consen 261 SDG----AYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPD------SDLYSLVLEDNQIHLIKASDLEIKST 329 (792)
T ss_pred cCC----ceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCC------CCeEEEEecCceEEEEeccchhhhhh
Confidence 567 899999999999999999998 3445556789999999999 68888888999999987755543333
Q ss_pred ecC-----------CCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEe
Q 000743 482 FPG-----------HPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 533 (1313)
Q Consensus 482 l~g-----------H~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~ 533 (1313)
+.| ..+..+.++++|--+.++-.+.. |.|.+||+-+.+.+..++
T Consensus 330 Isgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~--------g~vQ~ydl~td~~i~~~~ 384 (792)
T KOG1963|consen 330 ISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHP--------GHVQFYDLYTDSTIYKLQ 384 (792)
T ss_pred ccCccCCCccccccccccceeEEEcCCCCceeecCCC--------ceEEEEeccccceeeeEE
Confidence 322 23346789999955555555554 899999998877665553
No 236
>PRK03629 tolB translocation protein TolB; Provisional
Probab=97.99 E-value=0.00051 Score=83.64 Aligned_cols=121 Identities=12% Similarity=0.078 Sum_probs=81.1
Q ss_pred EEEEEEeccccCCCCCccCcEEE-EEeCCC--cEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCC-
Q 000743 390 VLCLAAHRMVGTAKGWSFNEVLV-SGSMDC--SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGED- 465 (1313)
Q Consensus 390 V~sLafsP~~s~pDGr~~~~~La-SGS~Dg--tIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~D- 465 (1313)
+....|+ ||| +.|+ +.+.++ .|.+||+.+++... +..+...+....|+|+ |+.|+.++.+
T Consensus 245 ~~~~~~S-----PDG----~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPD------G~~I~f~s~~~ 308 (429)
T PRK03629 245 NGAPAFS-----PDG----SKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPD------SQNLAYTSDQA 308 (429)
T ss_pred cCCeEEC-----CCC----CEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCC------CCEEEEEeCCC
Confidence 4467888 577 5554 445555 58899999887654 4445557888999999 6777766654
Q ss_pred CeEEE--EECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEe
Q 000743 466 FSVAL--ASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 533 (1313)
Q Consensus 466 gtV~L--WDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~ 533 (1313)
+...+ +|+.+++.. .+..+........|+|+|++|+..+.+ +....|++||+.+++.. .+.
T Consensus 309 g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~SpDG~~Ia~~~~~-----~g~~~I~~~dl~~g~~~-~Lt 371 (429)
T PRK03629 309 GRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSN-----GGQQHIAKQDLATGGVQ-VLT 371 (429)
T ss_pred CCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEEcc-----CCCceEEEEECCCCCeE-EeC
Confidence 44444 467666543 343344455678999999999876654 11257999999988743 444
No 237
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=97.94 E-value=6.1e-05 Score=94.09 Aligned_cols=128 Identities=20% Similarity=0.257 Sum_probs=107.0
Q ss_pred cCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCC----CceEEEEeccCCCEEEEEECCCCCCCCCCCEEE
Q 000743 385 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS----GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFL 460 (1313)
Q Consensus 385 GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~t----g~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~La 460 (1313)
.|+-.++|.++|| +| +++++|..||.|.+|.-.. ....+.++-|...|+++.|+++ |.+++
T Consensus 203 ~Htf~~t~~~~sp-----n~----~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~------G~~Ll 267 (792)
T KOG1963|consen 203 HHTFNITCVALSP-----NE----RYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSD------GAYLL 267 (792)
T ss_pred hhcccceeEEecc-----cc----ceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecC------CceEe
Confidence 4666689999995 44 8999999999999997443 2245678889999999999999 79999
Q ss_pred EEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCC
Q 000743 461 SVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTA 536 (1313)
Q Consensus 461 SgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~ 536 (1313)
|||..+.+.+|.+.+++ .+-++.-.++|..+.++||+++.+..+.| +.|.+-.+.+-+...+++|-.
T Consensus 268 SGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~D--------NqI~li~~~dl~~k~tIsgi~ 334 (792)
T KOG1963|consen 268 SGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLED--------NQIHLIKASDLEIKSTISGIK 334 (792)
T ss_pred ecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecC--------ceEEEEeccchhhhhhccCcc
Confidence 99999999999999988 45566667789999999999999988877 999999887766666666654
No 238
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.94 E-value=0.00013 Score=83.15 Aligned_cols=210 Identities=16% Similarity=0.170 Sum_probs=141.7
Q ss_pred CceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEec
Q 000743 318 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 397 (1313)
Q Consensus 318 ~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP 397 (1313)
....+.||.+.|++...++... ++++.+.|.+++| |-.+. ....|- .+. ..-..+++++.|++
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~----gv~~~s~drtvrv--~lkrd----s~q~wp-----sI~--~~mP~~~~~~~y~~ 78 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEE----GVISVSEDRTVRV--WLKRD----SGQYWP-----SIY--HYMPSPCSAMEYVS 78 (404)
T ss_pred hhhhhcCchhhhhhheeccCCC----CeEEccccceeee--EEecc----ccccCc-----hhh--hhCCCCceEeeeec
Confidence 3556788889898876666555 7999999999999 52110 111120 111 11235678888874
Q ss_pred cccCCCCCccCcEEEEEeCCCcEEEEECC----CCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEEC
Q 000743 398 MVGTAKGWSFNEVLVSGSMDCSIRIWDLG----SGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASL 473 (1313)
Q Consensus 398 ~~s~pDGr~~~~~LaSGS~DgtIrVWDl~----tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL 473 (1313)
....|+.|-..|++.-+.+. .....+.+..|...|..+.|+-. -..+++.+.|..+.---.
T Consensus 79 ---------e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~------~e~V~s~~~dk~~~~hc~ 143 (404)
T KOG1409|consen 79 ---------ESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLT------HEWVLSTGKDKQFAWHCT 143 (404)
T ss_pred ---------cceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCC------ceeEEEeccccceEEEee
Confidence 23678888888888887654 44566777789999999888765 245666665554421111
Q ss_pred C-----------------------------------------CCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCC
Q 000743 474 E-----------------------------------------TLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTS 512 (1313)
Q Consensus 474 ~-----------------------------------------t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGss 512 (1313)
+ .-..+.++.+|.+.+++++|.|....|.+|..|
T Consensus 144 e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d----- 218 (404)
T KOG1409|consen 144 ESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASD----- 218 (404)
T ss_pred ccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEecccc-----
Confidence 1 113456788999999999999999999987766
Q ss_pred CCCCEEEEEECCCCc-EEEEEeCCCCceeEEeeecccccceeecccccCCcccccCcccccCCCcEEEEeCCc
Q 000743 513 DAVDVLFIWDVKTGA-RERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 584 (1313)
Q Consensus 513 D~DgtIrVWDlrTG~-lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~~ 584 (1313)
..+-+||+--++ ...++.||...|....+. ...--+.++..|+-|-+|+++.
T Consensus 219 ---~~vi~wdigg~~g~~~el~gh~~kV~~l~~~-----------------~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 219 ---HSVIMWDIGGRKGTAYELQGHNDKVQALSYA-----------------QHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred ---CceEEEeccCCcceeeeeccchhhhhhhhhh-----------------hhheeeeeccCCCeEEEEeccc
Confidence 899999996544 346778999887443221 1222345666799999999874
No 239
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.93 E-value=3.1e-05 Score=61.46 Aligned_cols=39 Identities=36% Similarity=0.619 Sum_probs=35.5
Q ss_pred ceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEE
Q 000743 377 HVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 424 (1313)
Q Consensus 377 g~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWD 424 (1313)
+++++++.+|.+.|++++|+| ++ ++|+||+.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~-----~~----~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSP-----DG----NFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEET-----TS----SEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEec-----cc----ccceeeCCCCEEEEEC
Confidence 367899999999999999995 34 8999999999999998
No 240
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.93 E-value=1.8e-05 Score=89.89 Aligned_cols=126 Identities=15% Similarity=0.152 Sum_probs=102.6
Q ss_pred CCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCC-----ceEEEEeccCCCEEEEEECCCCCCCCCCCEEE
Q 000743 386 HTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG-----NLITVMHHHVAPVRQIILSPPQTEHPWSDCFL 460 (1313)
Q Consensus 386 H~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg-----~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~La 460 (1313)
-++.|.++.|+- ..+++..|...|.|...|++.. .+.+.+. |.+.|+++..-... ++++.
T Consensus 251 sksDVfAlQf~~---------s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~Lq~s-----~q~Lm 315 (425)
T KOG2695|consen 251 SKSDVFALQFAG---------SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQILQFS-----QQKLM 315 (425)
T ss_pred cchhHHHHHhcc---------cCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhhhccc-----cceEe
Confidence 456688888862 3479999999999999999854 5777776 99999999877622 57899
Q ss_pred EEeCCCeEEEEECCCCcE---EEEecCCCCCc--EEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeC
Q 000743 461 SVGEDFSVALASLETLRV---ERMFPGHPNYP--AKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 534 (1313)
Q Consensus 461 SgS~DgtV~LWDL~t~~~---l~~l~gH~~~V--~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~G 534 (1313)
+.+.+|+|++||+|.-++ +..+.||.+.- .-+..++....+++++.| ...|||.++.|+++.++.-
T Consensus 316 aS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdD--------cytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 316 ASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDD--------CYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred eccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCe--------eEEEEEecccCceeeccCC
Confidence 999999999999998777 99999997643 345567888889887766 8999999999999887654
No 241
>PRK02889 tolB translocation protein TolB; Provisional
Probab=97.92 E-value=0.00054 Score=83.35 Aligned_cols=130 Identities=12% Similarity=0.114 Sum_probs=86.8
Q ss_pred eEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCC---CcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCC
Q 000743 378 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD---CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHP 454 (1313)
Q Consensus 378 ~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~D---gtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~ 454 (1313)
...+.+..+.+.+.+.+|+ ||| +.|+..+.+ ..|.+||+.+++... +....+.+....|+|+
T Consensus 186 ~~~~~l~~~~~~v~~p~wS-----PDG----~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPD----- 250 (427)
T PRK02889 186 QNAQSALSSPEPIISPAWS-----PDG----TKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPD----- 250 (427)
T ss_pred CCceEeccCCCCcccceEc-----CCC----CEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCC-----
Confidence 3445566778889999998 566 777766643 359999999887643 3334456678999999
Q ss_pred CCCEEE-EEeCCCeEEEEEC--CCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEE
Q 000743 455 WSDCFL-SVGEDFSVALASL--ETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARE 529 (1313)
Q Consensus 455 ~g~~La-SgS~DgtV~LWDL--~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv 529 (1313)
|+.++ +.+.|+...||.+ ..+. ...+..|........|+|||++|+..+.. ++.-.|++.|+.++...
T Consensus 251 -G~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~-----~g~~~Iy~~~~~~g~~~ 321 (427)
T PRK02889 251 -GRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDR-----GGAPQIYRMPASGGAAQ 321 (427)
T ss_pred -CCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecC-----CCCcEEEEEECCCCceE
Confidence 56554 6777887776654 4443 45566565556678999999998865432 11134555566666543
No 242
>PRK02889 tolB translocation protein TolB; Provisional
Probab=97.91 E-value=0.00032 Score=85.31 Aligned_cols=166 Identities=16% Similarity=0.155 Sum_probs=100.0
Q ss_pred cCCceEEEEeeeecccccCC--EEEEEEc-CCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEecccc
Q 000743 324 HKEKIVSSSMVISESFYAPY--AIVYGFF-SGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVG 400 (1313)
Q Consensus 324 ~H~~~Vts~l~is~~~fsP~--~LvsGs~-DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s 400 (1313)
.+...+.+ ..|+|+ .+++.+. ++.-.++.|++ .+++.. .+....+.+.+..|+
T Consensus 193 ~~~~~v~~------p~wSPDG~~la~~s~~~~~~~I~~~dl-------------~~g~~~-~l~~~~g~~~~~~~S---- 248 (427)
T PRK02889 193 SSPEPIIS------PAWSPDGTKLAYVSFESKKPVVYVHDL-------------ATGRRR-VVANFKGSNSAPAWS---- 248 (427)
T ss_pred cCCCCccc------ceEcCCCCEEEEEEccCCCcEEEEEEC-------------CCCCEE-EeecCCCCccceEEC----
Confidence 34455555 556666 3666553 34334444653 333332 233344556688898
Q ss_pred CCCCCccCcEEEEEeCCCcEEEEEC--CCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeC-CCeEEEEEC--CC
Q 000743 401 TAKGWSFNEVLVSGSMDCSIRIWDL--GSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE-DFSVALASL--ET 475 (1313)
Q Consensus 401 ~pDGr~~~~~LaSGS~DgtIrVWDl--~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~-DgtV~LWDL--~t 475 (1313)
||| ..++++.+.|+...+|.+ .++. ...+..|.+.+....|+|+ |+.++.++. ++...+|.+ .+
T Consensus 249 -PDG---~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpD------G~~l~f~s~~~g~~~Iy~~~~~~ 317 (427)
T PRK02889 249 -PDG---RTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPD------GRSIYFTSDRGGAPQIYRMPASG 317 (427)
T ss_pred -CCC---CEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCC------CCEEEEEecCCCCcEEEEEECCC
Confidence 566 234457788888777765 3443 5566666666778899999 676665554 456666654 44
Q ss_pred CcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEE
Q 000743 476 LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 530 (1313)
Q Consensus 476 ~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~ 530 (1313)
++... +..+........|+|+|++|+..+.+ + .+..|++||+.+++...
T Consensus 318 g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~s~~--~---g~~~I~v~d~~~g~~~~ 366 (427)
T PRK02889 318 GAAQR-VTFTGSYNTSPRISPDGKLLAYISRV--G---GAFKLYVQDLATGQVTA 366 (427)
T ss_pred CceEE-EecCCCCcCceEECCCCCEEEEEEcc--C---CcEEEEEEECCCCCeEE
Confidence 44322 22222334467899999999876654 1 12479999999887543
No 243
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.89 E-value=2.9e-05 Score=61.61 Aligned_cols=39 Identities=18% Similarity=0.306 Sum_probs=36.8
Q ss_pred CceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEE
Q 000743 428 GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALAS 472 (1313)
Q Consensus 428 g~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWD 472 (1313)
|++++++.+|.++|++++|+|+ +++|+|++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~------~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPD------GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETT------SSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecc------cccceeeCCCCEEEEEC
Confidence 4688999999999999999999 79999999999999997
No 244
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.88 E-value=0.00018 Score=82.11 Aligned_cols=164 Identities=18% Similarity=0.193 Sum_probs=118.5
Q ss_pred CceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCC
Q 000743 326 EKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGW 405 (1313)
Q Consensus 326 ~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr 405 (1313)
+.++++..|..+.. +|++|-.+|++.-+... . |.......+.+..|..+|..+-|+-
T Consensus 68 P~~~~~~~y~~e~~----~L~vg~~ngtvtefs~s--e---------dfnkm~~~r~~~~h~~~v~~~if~~-------- 124 (404)
T KOG1409|consen 68 PSPCSAMEYVSESR----RLYVGQDNGTVTEFALS--E---------DFNKMTFLKDYLAHQARVSAIVFSL-------- 124 (404)
T ss_pred CCCceEeeeeccce----EEEEEEecceEEEEEhh--h---------hhhhcchhhhhhhhhcceeeEEecC--------
Confidence 35566655555544 69999999999873321 1 2223344566678888888888863
Q ss_pred ccCcEEEEEeCCCcEEEEECCC-----------------------------------------CceEEEEeccCCCEEEE
Q 000743 406 SFNEVLVSGSMDCSIRIWDLGS-----------------------------------------GNLITVMHHHVAPVRQI 444 (1313)
Q Consensus 406 ~~~~~LaSGS~DgtIrVWDl~t-----------------------------------------g~~l~t~~gH~~~V~sV 444 (1313)
..++++|.+.|+.+..--.+. -.++.++.+|.+.++++
T Consensus 125 -~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l 203 (404)
T KOG1409|consen 125 -THEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCL 203 (404)
T ss_pred -CceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEE
Confidence 236777877776654332221 12466788999999999
Q ss_pred EECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcE-EEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEEC
Q 000743 445 ILSPPQTEHPWSDCFLSVGEDFSVALASLETLRV-ERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 523 (1313)
Q Consensus 445 ~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~-l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDl 523 (1313)
.|.|. ...+.|++.|.+|.+||+--++- ...+.+|.+.|..+..-+.-..+++++.| |.|-+||+
T Consensus 204 ~Wd~~------~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~ed--------g~i~~w~m 269 (404)
T KOG1409|consen 204 KWDPG------QRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGED--------GGIVVWNM 269 (404)
T ss_pred EEcCC------CcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCC--------CeEEEEec
Confidence 99998 57999999999999999975543 35778999999988888888888876665 99999999
Q ss_pred CCCc
Q 000743 524 KTGA 527 (1313)
Q Consensus 524 rTG~ 527 (1313)
+...
T Consensus 270 n~~r 273 (404)
T KOG1409|consen 270 NVKR 273 (404)
T ss_pred ccee
Confidence 7543
No 245
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=97.82 E-value=0.00016 Score=86.67 Aligned_cols=121 Identities=11% Similarity=0.053 Sum_probs=93.1
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEec------C
Q 000743 411 LVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFP------G 484 (1313)
Q Consensus 411 LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~------g 484 (1313)
|+.++....|.=.+++.|..+..|....+.+++|.+++. ..+|++|+.||.|-.||.++...+.++. .
T Consensus 148 ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~------hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s 221 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEE------HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNS 221 (703)
T ss_pred EEEeecCcceEEEEccccccccccccccccceeeeecCc------cceEEecccCceEEEecchhhhhheeeecccccCC
Confidence 444555567888899999999999988899999999998 4789999999999999999876554442 3
Q ss_pred CCC-----CcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEE-EeCCCCceeEEeee
Q 000743 485 HPN-----YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV-LRGTASHSMFDHFC 545 (1313)
Q Consensus 485 H~~-----~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~-L~GH~a~Vi~~~~c 545 (1313)
|.+ .|+++.|+.+|-.+++|..+ |.|+|||+|+.+++.. =++-.-++....|-
T Consensus 222 ~pg~~~~~svTal~F~d~gL~~aVGts~--------G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~ 280 (703)
T KOG2321|consen 222 HPGGDAAPSVTALKFRDDGLHVAVGTST--------GSVLIYDLRASKPLLVKDHGYELPIKKLDWQ 280 (703)
T ss_pred CccccccCcceEEEecCCceeEEeeccC--------CcEEEEEcccCCceeecccCCccceeeeccc
Confidence 433 38999999999999987665 9999999999876543 23333444444453
No 246
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.82 E-value=7.6e-05 Score=83.62 Aligned_cols=172 Identities=17% Similarity=0.103 Sum_probs=117.7
Q ss_pred CceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEE-EEEecCCccEEEEEEe
Q 000743 318 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSR-QYFLGHTGAVLCLAAH 396 (1313)
Q Consensus 318 ~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~-~~L~GH~~~V~sLafs 396 (1313)
..++++.|..+..-..+ ....|+.+.+|+.||.+.. ||...+ ++.+ +.-+-|+..|.++.-+
T Consensus 157 ~vq~wk~He~E~Wta~f---~~~~pnlvytGgDD~~l~~--~D~R~p------------~~~i~~n~kvH~~GV~SI~ss 219 (339)
T KOG0280|consen 157 KVQTWKVHEFEAWTAKF---SDKEPNLVYTGGDDGSLSC--WDIRIP------------KTFIWHNSKVHTSGVVSIYSS 219 (339)
T ss_pred ecccccccceeeeeeec---ccCCCceEEecCCCceEEE--EEecCC------------cceeeecceeeecceEEEecC
Confidence 35678888888776322 3345678999999999999 765422 1122 2245688899999888
Q ss_pred ccccCCCCCccCcEEEEEeCCCcEEEEECC-CCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCC
Q 000743 397 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLG-SGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET 475 (1313)
Q Consensus 397 P~~s~pDGr~~~~~LaSGS~DgtIrVWDl~-tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t 475 (1313)
| |++ .++++|+.|-.|++||.+ -++++..-. -.+.|+.+..+|... +.++.++.-+-.++-+...
T Consensus 220 ~----~~~----~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~-----~~lL~~CMh~G~ki~~~~~ 285 (339)
T KOG0280|consen 220 P----PKP----TYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIF-----HRLLAACMHNGAKILDSSD 285 (339)
T ss_pred C----CCC----ceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhh-----hHHHHHHHhcCceEEEecc
Confidence 6 444 899999999999999999 567776655 458899999999732 2233333344456666654
Q ss_pred Cc-----EEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEE-EEECCCCc
Q 000743 476 LR-----VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLF-IWDVKTGA 527 (1313)
Q Consensus 476 ~~-----~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIr-VWDlrTG~ 527 (1313)
+. .......|.+-++.-.|+....+++|++. +|+.++ +|-.-|++
T Consensus 286 ~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsF-------YDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 286 KVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSF-------YDKKIRQLWLHITGE 336 (339)
T ss_pred cccchheeeeccccccceeeccccccccceeeeeec-------cccceeeeeeeccCC
Confidence 32 34456677776777788766678887543 247866 88766654
No 247
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.80 E-value=0.0014 Score=78.60 Aligned_cols=125 Identities=18% Similarity=0.164 Sum_probs=84.6
Q ss_pred EecCCccEEEEEEeccccCCCCCccCcEEEEEeCCC--cEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEE
Q 000743 383 FLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDC--SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFL 460 (1313)
Q Consensus 383 L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~Dg--tIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~La 460 (1313)
+..+.+.+.+..|+ ||| ..++++.+.++ .|.+||+.+++. ..+..|........|+|+ |+.|+
T Consensus 229 ~~~~~~~~~~~~~s-----pDg---~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~d------g~~l~ 293 (417)
T TIGR02800 229 VASFPGMNGAPAFS-----PDG---SKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPD------GKSIA 293 (417)
T ss_pred eecCCCCccceEEC-----CCC---CEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCC------CCEEE
Confidence 44455667778898 466 23445666554 588999988764 344445555667789998 67776
Q ss_pred EEeC-CC--eEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcE
Q 000743 461 SVGE-DF--SVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 528 (1313)
Q Consensus 461 SgS~-Dg--tV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~l 528 (1313)
.++. ++ .|.++|+.+++.. .+..+........|+|++++++..+.+ + ....|++||+.++..
T Consensus 294 ~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i~~~~~~--~---~~~~i~~~d~~~~~~ 358 (417)
T TIGR02800 294 FTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLIAFVHRE--G---GGFNIAVMDLDGGGE 358 (417)
T ss_pred EEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEEEEEEcc--C---CceEEEEEeCCCCCe
Confidence 6554 33 5778888776643 444444567788999999999987765 1 113899999988654
No 248
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.78 E-value=0.00042 Score=82.85 Aligned_cols=113 Identities=14% Similarity=0.135 Sum_probs=86.4
Q ss_pred cEE-EEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC
Q 000743 409 EVL-VSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN 487 (1313)
Q Consensus 409 ~~L-aSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~ 487 (1313)
+++ ++-..++.|.+.|..+.+.+.++......-..+.|+|+ |+++..++.|+.|.++|+.+++.+.+++.-.
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~D------gr~~yv~~rdg~vsviD~~~~~~v~~i~~G~- 78 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPD------GRYLYVANRDGTVSVIDLATGKVVATIKVGG- 78 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-------SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCC------CCEEEEEcCCCeEEEEECCcccEEEEEecCC-
Confidence 444 56677899999999999999999865544456789999 7888888999999999999999998887543
Q ss_pred CcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCC
Q 000743 488 YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGT 535 (1313)
Q Consensus 488 ~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH 535 (1313)
....++++++|+++++++.. ++++.++|.+|.+.++.+...
T Consensus 79 ~~~~i~~s~DG~~~~v~n~~-------~~~v~v~D~~tle~v~~I~~~ 119 (369)
T PF02239_consen 79 NPRGIAVSPDGKYVYVANYE-------PGTVSVIDAETLEPVKTIPTG 119 (369)
T ss_dssp EEEEEEE--TTTEEEEEEEE-------TTEEEEEETTT--EEEEEE--
T ss_pred CcceEEEcCCCCEEEEEecC-------CCceeEeccccccceeecccc
Confidence 56899999999999998765 389999999999999887643
No 249
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.75 E-value=0.00025 Score=82.39 Aligned_cols=108 Identities=18% Similarity=0.226 Sum_probs=83.6
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCC
Q 000743 410 VLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMF-PGHPNY 488 (1313)
Q Consensus 410 ~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l-~gH~~~ 488 (1313)
.....+++..+.+|....+.+. .+-||-+-++.|+|+|| ++.|+++..|..|++-....-..+..| -||+.+
T Consensus 124 v~dkagD~~~~di~s~~~~~~~-~~lGhvSml~dVavS~D------~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eF 196 (390)
T KOG3914|consen 124 VADKAGDVYSFDILSADSGRCE-PILGHVSMLLDVAVSPD------DQFIITADRDEKIRVSRYPATFVIESFCLGHKEF 196 (390)
T ss_pred EEeecCCceeeeeecccccCcc-hhhhhhhhhheeeecCC------CCEEEEecCCceEEEEecCcccchhhhccccHhh
Confidence 4445667778888888775544 44579999999999999 689999999999999776654444444 589999
Q ss_pred cEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEe
Q 000743 489 PAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 533 (1313)
Q Consensus 489 V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~ 533 (1313)
|..++.-++.. |++|+- | +++|+||+++|+++.++.
T Consensus 197 VS~isl~~~~~-LlS~sG------D--~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 197 VSTISLTDNYL-LLSGSG------D--KTLRLWDITSGKLLDTCD 232 (390)
T ss_pred eeeeeeccCce-eeecCC------C--CcEEEEecccCCcccccc
Confidence 99999987654 666443 3 999999999999875543
No 250
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.74 E-value=0.0038 Score=75.02 Aligned_cols=128 Identities=16% Similarity=0.201 Sum_probs=88.7
Q ss_pred EEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCC---CcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCC
Q 000743 380 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD---CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWS 456 (1313)
Q Consensus 380 ~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~D---gtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g 456 (1313)
.+.+..+...+....|+ ||| ++|+.++.+ ..|.+||+.+++... +..+.+.+.+..|+|+ |
T Consensus 182 ~~~l~~~~~~~~~p~~S-----pdg----~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spD------g 245 (417)
T TIGR02800 182 PQTITRSREPILSPAWS-----PDG----QKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPD------G 245 (417)
T ss_pred CEEeecCCCceecccCC-----CCC----CEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCC------C
Confidence 45566677778888888 567 777766543 489999999886543 3345666778999999 5
Q ss_pred CEE-EEEeCCC--eEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEE
Q 000743 457 DCF-LSVGEDF--SVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARE 529 (1313)
Q Consensus 457 ~~L-aSgS~Dg--tV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv 529 (1313)
+.| ++.+.++ .|.+||+.+++. ..+..+........|+|++++|+..+.. +....|++||+.+++..
T Consensus 246 ~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~-----~g~~~iy~~d~~~~~~~ 315 (417)
T TIGR02800 246 SKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDR-----GGSPQIYMMDADGGEVR 315 (417)
T ss_pred CEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECC-----CCCceEEEEECCCCCEE
Confidence 655 4555444 588899987654 3444454455678999999998865543 11247999999887654
No 251
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.73 E-value=0.0022 Score=76.70 Aligned_cols=151 Identities=19% Similarity=0.219 Sum_probs=102.7
Q ss_pred EEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEE
Q 000743 345 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 424 (1313)
Q Consensus 345 LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWD 424 (1313)
+++-..+|.+.+ .| ..+.+.+..+......-..+.|+ +|| ++++.++.|+.|.++|
T Consensus 9 ~V~~~~~~~v~v--iD-------------~~t~~~~~~i~~~~~~h~~~~~s-----~Dg----r~~yv~~rdg~vsviD 64 (369)
T PF02239_consen 9 YVVERGSGSVAV--ID-------------GATNKVVARIPTGGAPHAGLKFS-----PDG----RYLYVANRDGTVSVID 64 (369)
T ss_dssp EEEEGGGTEEEE--EE-------------TTT-SEEEEEE-STTEEEEEE-T-----T-S----SEEEEEETTSEEEEEE
T ss_pred EEEecCCCEEEE--EE-------------CCCCeEEEEEcCCCCceeEEEec-----CCC----CEEEEEcCCCeEEEEE
Confidence 455667899988 43 35567788887654433345566 677 7888889999999999
Q ss_pred CCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEE-eCCCeEEEEECCCCcEEEEecC------------------C
Q 000743 425 LGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSV-GEDFSVALASLETLRVERMFPG------------------H 485 (1313)
Q Consensus 425 l~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSg-S~DgtV~LWDL~t~~~l~~l~g------------------H 485 (1313)
+.+++.+.++.. .....+++++|+ |++++.+ ..++.+.++|.++.+.++.++. |
T Consensus 65 ~~~~~~v~~i~~-G~~~~~i~~s~D------G~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~ 137 (369)
T PF02239_consen 65 LATGKVVATIKV-GGNPRGIAVSPD------GKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASP 137 (369)
T ss_dssp TTSSSEEEEEE--SSEEEEEEE--T------TTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-S
T ss_pred CCcccEEEEEec-CCCcceEEEcCC------CCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecC
Confidence 999999999974 456788999999 6766654 5789999999988766654321 0
Q ss_pred ---------------------------------CCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEE
Q 000743 486 ---------------------------------PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL 532 (1313)
Q Consensus 486 ---------------------------------~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L 532 (1313)
........|+|+++|++++... ++.|-++|.++++++..+
T Consensus 138 ~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~-------sn~i~viD~~~~k~v~~i 210 (369)
T PF02239_consen 138 GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANG-------SNKIAVIDTKTGKLVALI 210 (369)
T ss_dssp SSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGG-------GTEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccc-------cceeEEEeeccceEEEEe
Confidence 0123445789999988776543 269999999999887665
Q ss_pred e
Q 000743 533 R 533 (1313)
Q Consensus 533 ~ 533 (1313)
.
T Consensus 211 ~ 211 (369)
T PF02239_consen 211 D 211 (369)
T ss_dssp E
T ss_pred e
Confidence 4
No 252
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=8.4e-05 Score=87.89 Aligned_cols=130 Identities=16% Similarity=0.195 Sum_probs=94.5
Q ss_pred EEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCC-------CceEEEEeccCCCEEEEEECCCCC
Q 000743 379 SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS-------GNLITVMHHHVAPVRQIILSPPQT 451 (1313)
Q Consensus 379 ~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~t-------g~~l~t~~gH~~~V~sV~fsPd~~ 451 (1313)
.+..|.||+..|..++.-. +.+-++|+|.|+||++|.++. ..|..+++.|..+|.++.|-.+
T Consensus 727 rL~nf~GH~~~iRai~Aid---------NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~-- 795 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAID---------NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLAD-- 795 (1034)
T ss_pred eeecccCcHHHhHHHHhcc---------cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeec--
Confidence 4567889999999887531 346799999999999999873 3478889999999999999887
Q ss_pred CCCCCCEEEEEeCCCeEEEEECCCCcEEEEe---cCCCCCcEEEEEcC--CCCEEEEEecCCCCCCCCCCEEEEEECCCC
Q 000743 452 EHPWSDCFLSVGEDFSVALASLETLRVERMF---PGHPNYPAKVVWDC--PRGYIACLCRDHSRTSDAVDVLFIWDVKTG 526 (1313)
Q Consensus 452 ~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l---~gH~~~V~sVafsP--dg~~Latgs~DlsGssD~DgtIrVWDlrTG 526 (1313)
.++++| .|+-+.+||.--++.+..+ +.| +.+..+.--| +...++.||.- ..+|+++|.|.+
T Consensus 796 ----lr~i~S--cD~giHlWDPFigr~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcsa-------eSTVKl~DaRsc 861 (1034)
T KOG4190|consen 796 ----LRSIAS--CDGGIHLWDPFIGRLLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCSA-------ESTVKLFDARSC 861 (1034)
T ss_pred ----cceeee--ccCcceeecccccchhHhhhcCccc-CCCceeEecccCcchheeeeccc-------hhhheeeecccc
Confidence 456665 4899999998777766533 223 2333333333 45566666543 379999999998
Q ss_pred cEEEEEe
Q 000743 527 ARERVLR 533 (1313)
Q Consensus 527 ~lv~~L~ 533 (1313)
+....++
T Consensus 862 e~~~E~k 868 (1034)
T KOG4190|consen 862 EWTCELK 868 (1034)
T ss_pred cceeeEE
Confidence 7665554
No 253
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.69 E-value=0.00012 Score=89.32 Aligned_cols=162 Identities=18% Similarity=0.234 Sum_probs=114.2
Q ss_pred EEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCC---CceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCC
Q 000743 390 VLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS---GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDF 466 (1313)
Q Consensus 390 V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~t---g~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~Dg 466 (1313)
|-.+.|+|. + ..+.++++-+..+ -.+|++.. ......+.+|+..|+.+.|+|.+ -..+++++-|.
T Consensus 70 vad~qws~h---~---a~~~wiVsts~qk-aiiwnlA~ss~~aIef~lhghsraitd~n~~~q~-----pdVlatcsvdt 137 (1081)
T KOG0309|consen 70 VADVQWSPH---P---AKPYWIVSTSNQK-AIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQH-----PDVLATCSVDT 137 (1081)
T ss_pred hcceecccC---C---CCceeEEecCcch-hhhhhhhcCCccceEEEEecCccceeccccCCCC-----Ccceeeccccc
Confidence 556677762 1 1245677776554 45888763 33556788999999999999985 36899999999
Q ss_pred eEEEEECCCCc-EEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCC-cEEEEEeCCCCceeEEee
Q 000743 467 SVALASLETLR-VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG-ARERVLRGTASHSMFDHF 544 (1313)
Q Consensus 467 tV~LWDL~t~~-~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG-~lv~~L~GH~a~Vi~~~~ 544 (1313)
.|..||++... +++.+..-......|+|+-....+.+.+.- +.|++||.+.| ..+..++||.+.|....|
T Consensus 138 ~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg--------~~i~vwd~r~gs~pl~s~K~~vs~vn~~~f 209 (1081)
T KOG0309|consen 138 YVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHG--------NDIFVWDLRKGSTPLCSLKGHVSSVNSIDF 209 (1081)
T ss_pred cceeeeccCCCcceeeeecccccCceeeecccCcchhhhccC--------CceEEEeccCCCcceEEecccceeeehHHH
Confidence 99999999753 555554444466789998866655543332 78999999986 577889999888865544
Q ss_pred ecccccceeecccccCCcccccCcccccCCCcEEEEeCCcccc
Q 000743 545 CKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDER 587 (1313)
Q Consensus 545 c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~~~~~ 587 (1313)
-.. .-+.+++.+.|+|+|.|+..+...
T Consensus 210 nr~----------------~~s~~~s~~~d~tvkfw~y~kSt~ 236 (1081)
T KOG0309|consen 210 NRF----------------KYSEIMSSSNDGTVKFWDYSKSTT 236 (1081)
T ss_pred hhh----------------hhhhhcccCCCCceeeeccccccc
Confidence 211 112345667799999999866543
No 254
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.65 E-value=0.003 Score=77.07 Aligned_cols=134 Identities=14% Similarity=0.109 Sum_probs=86.6
Q ss_pred eEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEe-CCCcEEEEE--CCC-CceEEEEeccCCCEEEEEECCCCCCC
Q 000743 378 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGS-MDCSIRIWD--LGS-GNLITVMHHHVAPVRQIILSPPQTEH 453 (1313)
Q Consensus 378 ~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS-~DgtIrVWD--l~t-g~~l~t~~gH~~~V~sV~fsPd~~~~ 453 (1313)
+..+...++.+......|+ ||| +.|+..+ .++...+|. +.. +.....+..+...+....|+|+
T Consensus 271 ~~~~lt~~~~~~~~~p~wS-----PDG----~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPD---- 337 (428)
T PRK01029 271 KPRRLLNEAFGTQGNPSFS-----PDG----TRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPD---- 337 (428)
T ss_pred cceEeecCCCCCcCCeEEC-----CCC----CEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCC----
Confidence 3334444443445667888 577 6555544 567666665 432 3334555555567788999999
Q ss_pred CCCCEEEEEeCC---CeEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEE
Q 000743 454 PWSDCFLSVGED---FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 530 (1313)
Q Consensus 454 ~~g~~LaSgS~D---gtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~ 530 (1313)
|+.|+..+.+ ..|.+||+.+++...... ....+....|+|+|++|+....+ +.+..|++||+.+++..+
T Consensus 338 --G~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~-----~g~~~L~~vdl~~g~~~~ 409 (428)
T PRK01029 338 --GKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSAGN-----SNESELYLISLITKKTRK 409 (428)
T ss_pred --CCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEECC-----CCCceEEEEECCCCCEEE
Confidence 6777765543 468999999887654333 33456789999999988764433 223689999998877654
Q ss_pred EE
Q 000743 531 VL 532 (1313)
Q Consensus 531 ~L 532 (1313)
..
T Consensus 410 Lt 411 (428)
T PRK01029 410 IV 411 (428)
T ss_pred ee
Confidence 43
No 255
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.63 E-value=0.00022 Score=81.40 Aligned_cols=119 Identities=21% Similarity=0.224 Sum_probs=86.5
Q ss_pred EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEE
Q 000743 344 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 423 (1313)
Q Consensus 344 ~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVW 423 (1313)
.+..|+.+|.|.+++.. .. .. ..+.+.+.| -|...|+++..-. ..++.|++.+.+|+|++|
T Consensus 266 Lv~~GcRngeI~~iDLR--~r--nq------G~~~~a~rl-yh~Ssvtslq~Lq--------~s~q~LmaS~M~gkikLy 326 (425)
T KOG2695|consen 266 LVFNGCRNGEIFVIDLR--CR--NQ------GNGWCAQRL-YHDSSVTSLQILQ--------FSQQKLMASDMTGKIKLY 326 (425)
T ss_pred eeEecccCCcEEEEEee--ec--cc------CCCcceEEE-EcCcchhhhhhhc--------cccceEeeccCcCceeEe
Confidence 58899999999995543 22 11 122333443 3788899988642 134899999999999999
Q ss_pred ECCCCce---EEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC
Q 000743 424 DLGSGNL---ITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGH 485 (1313)
Q Consensus 424 Dl~tg~~---l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH 485 (1313)
|++.-++ +.++.||...-.-+-++-+ +....++++++|...++|.++.+..+.+++-.
T Consensus 327 D~R~~K~~~~V~qYeGHvN~~a~l~~~v~----~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 327 DLRATKCKKSVMQYEGHVNLSAYLPAHVK----EEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred eehhhhcccceeeeecccccccccccccc----cccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 9997777 8899999664444333322 12468899999999999999999998887644
No 256
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.62 E-value=6e-05 Score=99.12 Aligned_cols=121 Identities=15% Similarity=0.211 Sum_probs=95.3
Q ss_pred ceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEe---CCCcEEEEECCC--C-ceEEEEeccCCCEEEEEECCCC
Q 000743 377 HVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGS---MDCSIRIWDLGS--G-NLITVMHHHVAPVRQIILSPPQ 450 (1313)
Q Consensus 377 g~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS---~DgtIrVWDl~t--g-~~l~t~~gH~~~V~sV~fsPd~ 450 (1313)
.++....+.|.....++.|-- ..+++++ .++.+.+||..- + .+++ +.|.+.++++++.|.
T Consensus 2282 pk~~~s~qchnk~~~Df~Fi~-----------s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~- 2347 (2439)
T KOG1064|consen 2282 PKPYTSWQCHNKALSDFRFIG-----------SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPK- 2347 (2439)
T ss_pred CcceeccccCCccccceeeee-----------hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCc-
Confidence 356777788998888888851 4566654 678999999652 2 2455 779999999999998
Q ss_pred CCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEE
Q 000743 451 TEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 530 (1313)
Q Consensus 451 ~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~ 530 (1313)
.+.|+|||.+|.|++||++..+..++++. ++ ...++++|+.. |.++||++..-.++.
T Consensus 2348 -----~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~--------g~ikIw~~s~~~ll~ 2404 (2439)
T KOG1064|consen 2348 -----HQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSE--------GNIKIWRLSEFGLLH 2404 (2439)
T ss_pred -----ceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcc--------cceEEEEccccchhh
Confidence 48999999999999999998887766654 55 67788886655 999999998877776
Q ss_pred EEeC
Q 000743 531 VLRG 534 (1313)
Q Consensus 531 ~L~G 534 (1313)
++.+
T Consensus 2405 ~~p~ 2408 (2439)
T KOG1064|consen 2405 TFPS 2408 (2439)
T ss_pred cCch
Confidence 6653
No 257
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=97.57 E-value=0.00015 Score=85.62 Aligned_cols=134 Identities=22% Similarity=0.250 Sum_probs=107.1
Q ss_pred eEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEe-ccCCCEEEEEECCCCCCCCCC
Q 000743 378 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMH-HHVAPVRQIILSPPQTEHPWS 456 (1313)
Q Consensus 378 ~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~-gH~~~V~sV~fsPd~~~~~~g 456 (1313)
.....|.+|.|.|+.|.|+ ..| ..|+|||.|..|.+||..+++....|. +|...|.+-.|-|... .
T Consensus 133 ~l~~kL~~H~GcVntV~FN-----~~G----d~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~----d 199 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFN-----QRG----DVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSG----D 199 (559)
T ss_pred hhhhcccCCCCccceeeec-----ccC----ceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCC----C
Confidence 4466788999999999998 345 899999999999999999999888775 6999999999999742 4
Q ss_pred CEEEEEeCCCeEEEEECC-CCcEE--EEecCCCCCcEEEEEcCCCCE-EEEEecCCCCCCCCCCEEEEEECCCCcEEEEE
Q 000743 457 DCFLSVGEDFSVALASLE-TLRVE--RMFPGHPNYPAKVVWDCPRGY-IACLCRDHSRTSDAVDVLFIWDVKTGARERVL 532 (1313)
Q Consensus 457 ~~LaSgS~DgtV~LWDL~-t~~~l--~~l~gH~~~V~sVafsPdg~~-Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L 532 (1313)
..+++.+.||.|++=.+. ++.+. ..+..|.++|..++..|+..+ +.+++.| +.+.-.|++++.....+
T Consensus 200 ~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD--------~~v~~~Dlr~~~pa~~~ 271 (559)
T KOG1334|consen 200 RTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGED--------AVVFHIDLRQDVPAEKF 271 (559)
T ss_pred cCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccc--------cceeeeeeccCCcccee
Confidence 689999999999987664 34333 456679999999999998875 4444444 99999999987654333
No 258
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.48 E-value=0.008 Score=73.00 Aligned_cols=120 Identities=19% Similarity=0.119 Sum_probs=78.9
Q ss_pred CccEEEEEEeccccCCCCCccCcEE-EEEeCCC--cEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEe
Q 000743 387 TGAVLCLAAHRMVGTAKGWSFNEVL-VSGSMDC--SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG 463 (1313)
Q Consensus 387 ~~~V~sLafsP~~s~pDGr~~~~~L-aSGS~Dg--tIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS 463 (1313)
.+.+....|+ ||| +.| ++.+.++ .|.+||+.+++.. .+..+........|+|+ |+.++..+
T Consensus 242 ~g~~~~~~~S-----pDG----~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spD------g~~i~f~s 305 (430)
T PRK00178 242 EGLNGAPAWS-----PDG----SKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKD------GRTLYFTS 305 (430)
T ss_pred CCCcCCeEEC-----CCC----CEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCC------CCEEEEEE
Confidence 3445567888 566 544 4666555 5888899887654 45556666777899999 56655544
Q ss_pred C-CC--eEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcE
Q 000743 464 E-DF--SVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 528 (1313)
Q Consensus 464 ~-Dg--tV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~l 528 (1313)
. ++ .|.++|+.+++...... .........|+|++++|+..+.+ +....|++||+.+++.
T Consensus 306 ~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~~~~Spdg~~i~~~~~~-----~~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 306 DRGGKPQIYKVNVNGGRAERVTF-VGNYNARPRLSADGKTLVMVHRQ-----DGNFHVAAQDLQRGSV 367 (430)
T ss_pred CCCCCceEEEEECCCCCEEEeec-CCCCccceEECCCCCEEEEEEcc-----CCceEEEEEECCCCCE
Confidence 3 33 57777887777543221 12233467899999999876543 1124699999998865
No 259
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.44 E-value=0.017 Score=70.61 Aligned_cols=124 Identities=16% Similarity=0.182 Sum_probs=76.7
Q ss_pred ccEEEEEEeccccCCCCCccCcEEEEEe-C----CCcEEEEECCCC---ceEEEEeccCCCEEEEEECCCCCCCCCCCEE
Q 000743 388 GAVLCLAAHRMVGTAKGWSFNEVLVSGS-M----DCSIRIWDLGSG---NLITVMHHHVAPVRQIILSPPQTEHPWSDCF 459 (1313)
Q Consensus 388 ~~V~sLafsP~~s~pDGr~~~~~LaSGS-~----DgtIrVWDl~tg---~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~L 459 (1313)
+......|+ ||| +.|+-.+ . |-.+..||+.++ +......++.+......|+|+ |+.|
T Consensus 231 g~~~~p~wS-----PDG----~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPD------G~~L 295 (428)
T PRK01029 231 GNQLMPTFS-----PRK----KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPD------GTRL 295 (428)
T ss_pred CCccceEEC-----CCC----CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCC------CCEE
Confidence 334567888 577 5555433 2 334556887753 333333333344567899999 6766
Q ss_pred EEEe-CCCeEEEEE--CCC-CcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEE
Q 000743 460 LSVG-EDFSVALAS--LET-LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV 531 (1313)
Q Consensus 460 aSgS-~DgtV~LWD--L~t-~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~ 531 (1313)
+..+ .++...+|. +.. +.....+..+...+....|+|+|++|+..+.+ ++...|++||+.+|+....
T Consensus 296 af~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~-----~g~~~I~v~dl~~g~~~~L 366 (428)
T PRK01029 296 VFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVI-----KGVRQICVYDLATGRDYQL 366 (428)
T ss_pred EEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcC-----CCCcEEEEEECCCCCeEEc
Confidence 6655 466555554 432 23344555555567789999999999876543 1125899999999876443
No 260
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.42 E-value=0.0024 Score=79.08 Aligned_cols=142 Identities=18% Similarity=0.071 Sum_probs=106.3
Q ss_pred ccccCCE-EEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCC-CCC--ccCcEEEE
Q 000743 338 SFYAPYA-IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTA-KGW--SFNEVLVS 413 (1313)
Q Consensus 338 ~~fsP~~-LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~p-DGr--~~~~~LaS 413 (1313)
..|+|.+ ++.|+++-...| |..+-+.++.+.-|...|+.+.|.|.-... .+. ...-+|++
T Consensus 21 ~Dw~~~GLiAygshslV~VV----------------Ds~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAs 84 (1062)
T KOG1912|consen 21 ADWSPSGLIAYGSHSLVSVV----------------DSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIAS 84 (1062)
T ss_pred cccCccceEEEecCceEEEE----------------ehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEe
Confidence 5677776 566665544433 334557788899999999999998732111 110 02347888
Q ss_pred EeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCC-CEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEE
Q 000743 414 GSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWS-DCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKV 492 (1313)
Q Consensus 414 GS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g-~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sV 492 (1313)
+...|.|.+||...+..+..+..|.++|..++|-|.. ... +.++....-.++.+|+..+|+.............|+
T Consensus 85 aD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~r---d~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f 161 (1062)
T KOG1912|consen 85 ADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPAR---DDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCF 161 (1062)
T ss_pred ccccCcEEEEEehhhhhhhhhcCCCcchhheeeeecc---CcchheeEEecCCcEEEEEEccCCceeeccccCCcceeee
Confidence 8888999999999999999999999999999998863 223 578888888999999999999988776555566778
Q ss_pred EEcCCC
Q 000743 493 VWDCPR 498 (1313)
Q Consensus 493 afsPdg 498 (1313)
.++|-+
T Consensus 162 ~~DPfd 167 (1062)
T KOG1912|consen 162 RVDPFD 167 (1062)
T ss_pred eeCCCC
Confidence 888844
No 261
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.41 E-value=0.13 Score=61.37 Aligned_cols=109 Identities=12% Similarity=-0.008 Sum_probs=76.9
Q ss_pred cEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC-
Q 000743 409 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN- 487 (1313)
Q Consensus 409 ~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~- 487 (1313)
..++.++.++.+..||..+|+.+..... .. ...... . +..++.++.|+.+..+|..+++.+........
T Consensus 242 ~~vy~~~~~g~l~a~d~~tG~~~W~~~~-~~-~~~p~~--~------~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~ 311 (377)
T TIGR03300 242 GQVYAVSYQGRVAALDLRSGRVLWKRDA-SS-YQGPAV--D------DNRLYVTDADGVVVALDRRSGSELWKNDELKYR 311 (377)
T ss_pred CEEEEEEcCCEEEEEECCCCcEEEeecc-CC-ccCceE--e------CCEEEEECCCCeEEEEECCCCcEEEccccccCC
Confidence 5778888999999999999987766541 11 111111 1 46777788999999999999988766532211
Q ss_pred CcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCC
Q 000743 488 YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTAS 537 (1313)
Q Consensus 488 ~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a 537 (1313)
....... .+..+++++.| |.+++||.++|+.+..+..+..
T Consensus 312 ~~ssp~i--~g~~l~~~~~~--------G~l~~~d~~tG~~~~~~~~~~~ 351 (377)
T TIGR03300 312 QLTAPAV--VGGYLVVGDFE--------GYLHWLSREDGSFVARLKTDGS 351 (377)
T ss_pred ccccCEE--ECCEEEEEeCC--------CEEEEEECCCCCEEEEEEcCCC
Confidence 1122222 35688887766 9999999999999988876654
No 262
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.38 E-value=0.0073 Score=73.33 Aligned_cols=129 Identities=14% Similarity=0.171 Sum_probs=88.6
Q ss_pred EEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCC---CcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCC
Q 000743 380 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD---CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWS 456 (1313)
Q Consensus 380 ~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~D---gtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g 456 (1313)
.+.+..|...+....|+ ||| +.|+..+.+ ..|.+||+.+++... +....+.+....|+|+ |
T Consensus 191 ~~~l~~~~~~~~~p~wS-----pDG----~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpD------G 254 (430)
T PRK00178 191 AVTLLQSREPILSPRWS-----PDG----KRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPD------G 254 (430)
T ss_pred ceEEecCCCceeeeeEC-----CCC----CEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCC------C
Confidence 45566677788999998 566 677665543 368999999887543 3333445567899999 5
Q ss_pred CEEE-EEeCCC--eEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEE
Q 000743 457 DCFL-SVGEDF--SVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 530 (1313)
Q Consensus 457 ~~La-SgS~Dg--tV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~ 530 (1313)
+.++ +.+.++ .|.+||+.+++.. .+..+........|+|+++.|+..+.. +++..|++||+.+|+..+
T Consensus 255 ~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~-----~g~~~iy~~d~~~g~~~~ 325 (430)
T PRK00178 255 SKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDR-----GGKPQIYKVNVNGGRAER 325 (430)
T ss_pred CEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECC-----CCCceEEEEECCCCCEEE
Confidence 6555 555555 5888899887654 455555556678999999988765432 112579999998887544
No 263
>PRK04792 tolB translocation protein TolB; Provisional
Probab=97.38 E-value=0.017 Score=71.05 Aligned_cols=128 Identities=13% Similarity=0.119 Sum_probs=86.0
Q ss_pred EEEecCCccEEEEEEeccccCCCCCccCcEEEEEeC-CC--cEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCC
Q 000743 381 QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSM-DC--SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSD 457 (1313)
Q Consensus 381 ~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~-Dg--tIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~ 457 (1313)
+.+..+...+.+..|+ ||| +.|+-.+. ++ .|.+||+.+++... +....+......|+|+ |+
T Consensus 211 ~~l~~~~~~~~~p~wS-----PDG----~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPD------G~ 274 (448)
T PRK04792 211 QMLLRSPEPLMSPAWS-----PDG----RKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPD------GK 274 (448)
T ss_pred eEeecCCCcccCceEC-----CCC----CEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCC------CC
Confidence 4555667788899998 567 66665543 33 58899998887532 2222333457899999 56
Q ss_pred EEE-EEeCCCe--EEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEE
Q 000743 458 CFL-SVGEDFS--VALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 530 (1313)
Q Consensus 458 ~La-SgS~Dgt--V~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~ 530 (1313)
.|+ +.+.++. |.+||+.+++. ..+..+.......+|+|++++|+..+.. +....|+++|+.+|+..+
T Consensus 275 ~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~-----~g~~~Iy~~dl~~g~~~~ 344 (448)
T PRK04792 275 KLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSER-----GGKPQIYRVNLASGKVSR 344 (448)
T ss_pred EEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECC-----CCCceEEEEECCCCCEEE
Confidence 554 5566665 77778887765 4455555556788999999998875532 112578889998887544
No 264
>PRK04792 tolB translocation protein TolB; Provisional
Probab=97.37 E-value=0.012 Score=72.33 Aligned_cols=155 Identities=17% Similarity=0.160 Sum_probs=93.3
Q ss_pred ccccCCE--EEEEE-cCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEE
Q 000743 338 SFYAPYA--IVYGF-FSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSG 414 (1313)
Q Consensus 338 ~~fsP~~--LvsGs-~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSG 414 (1313)
..|+|++ ++..+ .++...++.+++ .+++.. .+....+......|+ ||| ..++++.
T Consensus 223 p~wSPDG~~La~~s~~~g~~~L~~~dl-------------~tg~~~-~lt~~~g~~~~~~wS-----PDG---~~La~~~ 280 (448)
T PRK04792 223 PAWSPDGRKLAYVSFENRKAEIFVQDI-------------YTQVRE-KVTSFPGINGAPRFS-----PDG---KKLALVL 280 (448)
T ss_pred ceECCCCCEEEEEEecCCCcEEEEEEC-------------CCCCeE-EecCCCCCcCCeeEC-----CCC---CEEEEEE
Confidence 5666663 65544 455656655653 222221 122222233467888 566 2344566
Q ss_pred eCCCc--EEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeC-CC--eEEEEECCCCcEEEE-ecCCCCC
Q 000743 415 SMDCS--IRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE-DF--SVALASLETLRVERM-FPGHPNY 488 (1313)
Q Consensus 415 S~Dgt--IrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~-Dg--tV~LWDL~t~~~l~~-l~gH~~~ 488 (1313)
+.|+. |.+||+.+++. ..+..+........|+|+ |+.++..+. ++ .|.++|+.+++.... +.++ .
T Consensus 281 ~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpD------G~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~--~ 351 (448)
T PRK04792 281 SKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPD------GKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGE--Q 351 (448)
T ss_pred eCCCCeEEEEEECCCCCe-EECccCCCCccceEECCC------CCEEEEEECCCCCceEEEEECCCCCEEEEecCCC--C
Confidence 77775 77788887765 445556666778899999 566655443 33 466678877765432 2332 3
Q ss_pred cEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcE
Q 000743 489 PAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 528 (1313)
Q Consensus 489 V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~l 528 (1313)
....+|+|+|++|+..+.+ +....|+++|+.+++.
T Consensus 352 ~~~~~~SpDG~~l~~~~~~-----~g~~~I~~~dl~~g~~ 386 (448)
T PRK04792 352 NLGGSITPDGRSMIMVNRT-----NGKFNIARQDLETGAM 386 (448)
T ss_pred CcCeeECCCCCEEEEEEec-----CCceEEEEEECCCCCe
Confidence 3457899999999876554 1113677789888865
No 265
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.33 E-value=0.00068 Score=78.95 Aligned_cols=87 Identities=20% Similarity=0.208 Sum_probs=74.5
Q ss_pred EEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEe-ccCCCEEEEEECCCCCCCCCCCEE
Q 000743 381 QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMH-HHVAPVRQIILSPPQTEHPWSDCF 459 (1313)
Q Consensus 381 ~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~-gH~~~V~sV~fsPd~~~~~~g~~L 459 (1313)
..+.||-.-++.++++| |+ ++++++..|..||+=.......+..|. ||..-|..++.-++ +.|
T Consensus 145 ~~~lGhvSml~dVavS~-----D~----~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-------~~L 208 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVSP-----DD----QFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-------YLL 208 (390)
T ss_pred chhhhhhhhhheeeecC-----CC----CEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-------cee
Confidence 34569999999999995 44 899999999999998877666666665 69999999999887 679
Q ss_pred EEEeCCCeEEEEECCCCcEEEEec
Q 000743 460 LSVGEDFSVALASLETLRVERMFP 483 (1313)
Q Consensus 460 aSgS~DgtV~LWDL~t~~~l~~l~ 483 (1313)
+|+|.|+++++||+++|+++.++.
T Consensus 209 lS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 209 LSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred eecCCCCcEEEEecccCCcccccc
Confidence 999999999999999999887664
No 266
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.27 E-value=0.00045 Score=76.48 Aligned_cols=94 Identities=15% Similarity=0.125 Sum_probs=70.6
Q ss_pred cEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCc-EEEEecCCCCCcEEEEEcCC
Q 000743 419 SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR-VERMFPGHPNYPAKVVWDCP 497 (1313)
Q Consensus 419 tIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~-~l~~l~gH~~~V~sVafsPd 497 (1313)
..+.|+++..+.+..-..-...|.+++-+|.. .+.+++|+.||.+.+||.+... +...+..|..+++.+.|||.
T Consensus 160 ~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~q-----q~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk 234 (319)
T KOG4714|consen 160 NFYANTLDPIKTLIPSKKALDAVTALCSHPAQ-----QHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPK 234 (319)
T ss_pred ceeeecccccccccccccccccchhhhCCccc-----ccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCC
Confidence 34566665433222222223459999999985 5789999999999999999774 34567789999999999994
Q ss_pred -CCEEEEEecCCCCCCCCCCEEEEEECCC
Q 000743 498 -RGYIACLCRDHSRTSDAVDVLFIWDVKT 525 (1313)
Q Consensus 498 -g~~Latgs~DlsGssD~DgtIrVWDlrT 525 (1313)
...|+++++| |.+.-||..+
T Consensus 235 ~p~~Lft~sed--------Gslw~wdas~ 255 (319)
T KOG4714|consen 235 NPEHLFTCSED--------GSLWHWDAST 255 (319)
T ss_pred CchheeEecCC--------CcEEEEcCCC
Confidence 5688988877 9999999765
No 267
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.13 E-value=0.11 Score=63.94 Aligned_cols=73 Identities=21% Similarity=0.227 Sum_probs=59.4
Q ss_pred cCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeC
Q 000743 385 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE 464 (1313)
Q Consensus 385 GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~ 464 (1313)
.....|.|.+++| .++.|+.|+.||+|++||...+... +..+.-..+.++|||+ |..|+.|+.
T Consensus 257 pL~s~v~~ca~sp---------~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~------gai~~V~s~ 319 (545)
T PF11768_consen 257 PLPSQVICCARSP---------SEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPD------GAIFVVGSE 319 (545)
T ss_pred ecCCcceEEecCc---------ccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCC------CcEEEEEcC
Confidence 3456789999986 3489999999999999998776433 3334556889999999 789999999
Q ss_pred CCeEEEEECC
Q 000743 465 DFSVALASLE 474 (1313)
Q Consensus 465 DgtV~LWDL~ 474 (1313)
-|.+.+||+.
T Consensus 320 qGelQ~FD~A 329 (545)
T PF11768_consen 320 QGELQCFDMA 329 (545)
T ss_pred CceEEEEEee
Confidence 9999999975
No 268
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.10 E-value=0.0088 Score=72.39 Aligned_cols=139 Identities=10% Similarity=0.066 Sum_probs=97.1
Q ss_pred CcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEEcCC
Q 000743 418 CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCP 497 (1313)
Q Consensus 418 gtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafsPd 497 (1313)
.++.+.++...++...+. -.++|.++.|+|+++ .-.++-|-.-.++.++|++ +.++..+. .++=+++-|+|.
T Consensus 251 q~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~----EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~ 322 (566)
T KOG2315|consen 251 QTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGR----EFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPH 322 (566)
T ss_pred ceEEEEEecCceEEEecC-CCCCceEEEECCCCC----EEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCC
Confidence 367777777445555554 578999999999932 1244455567899999986 67777764 456679999999
Q ss_pred CCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEeeecccccceeecccccCCcccccCcccccCCCcE
Q 000743 498 RGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTF 577 (1313)
Q Consensus 498 g~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtI 577 (1313)
|++|+.++.+ -.- |.|-|||+.+.+++..+..-...+ ..||+.- ...++.+ +.+-+.+ |.-+
T Consensus 323 g~ii~lAGFG---NL~--G~mEvwDv~n~K~i~~~~a~~tt~--~eW~PdG-e~flTAT--------TaPRlrv--dNg~ 384 (566)
T KOG2315|consen 323 GNIILLAGFG---NLP--GDMEVWDVPNRKLIAKFKAANTTV--FEWSPDG-EYFLTAT--------TAPRLRV--DNGI 384 (566)
T ss_pred CCEEEEeecC---CCC--CceEEEeccchhhccccccCCceE--EEEcCCC-cEEEEEe--------ccccEEe--cCCe
Confidence 9999888774 222 899999999988888877655433 4488722 1233322 2344555 8889
Q ss_pred EEEeC
Q 000743 578 RQSQI 582 (1313)
Q Consensus 578 r~Wdl 582 (1313)
|+||.
T Consensus 385 Kiwhy 389 (566)
T KOG2315|consen 385 KIWHY 389 (566)
T ss_pred EEEEe
Confidence 99996
No 269
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.03 E-value=0.077 Score=71.74 Aligned_cols=116 Identities=16% Similarity=0.088 Sum_probs=79.9
Q ss_pred EEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEecc---------------CCCEEEEEECCCCCCCCC
Q 000743 391 LCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHH---------------VAPVRQIILSPPQTEHPW 455 (1313)
Q Consensus 391 ~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH---------------~~~V~sV~fsPd~~~~~~ 455 (1313)
++++++| .+| .++++.+.++.|++||..++... .+.+. -...+.++++|+
T Consensus 686 ~gVa~dp----~~g----~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspd------ 750 (1057)
T PLN02919 686 WDVCFEP----VNE----KVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPD------ 750 (1057)
T ss_pred eEEEEec----CCC----eEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCC------
Confidence 5778874 133 78888889999999999877542 22211 123457899998
Q ss_pred CC-EEEEEeCCCeEEEEECCCCcEEEEecC---------------------CCCCcEEEEEcCCCCEEEEEecCCCCCCC
Q 000743 456 SD-CFLSVGEDFSVALASLETLRVERMFPG---------------------HPNYPAKVVWDCPRGYIACLCRDHSRTSD 513 (1313)
Q Consensus 456 g~-~LaSgS~DgtV~LWDL~t~~~l~~l~g---------------------H~~~V~sVafsPdg~~Latgs~DlsGssD 513 (1313)
++ .+++-+.++.|++||++++.......+ .-..+..++++++|+.+++-..+
T Consensus 751 G~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N------ 824 (1057)
T PLN02919 751 LKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN------ 824 (1057)
T ss_pred CCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC------
Confidence 45 677778889999999987653211100 01135689999999876664433
Q ss_pred CCCEEEEEECCCCcEE
Q 000743 514 AVDVLFIWDVKTGARE 529 (1313)
Q Consensus 514 ~DgtIrVWDlrTG~lv 529 (1313)
++|++||..++...
T Consensus 825 --~rIrviD~~tg~v~ 838 (1057)
T PLN02919 825 --HKIKKLDPATKRVT 838 (1057)
T ss_pred --CEEEEEECCCCeEE
Confidence 89999999887654
No 270
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.02 E-value=0.47 Score=56.56 Aligned_cols=95 Identities=13% Similarity=-0.047 Sum_probs=65.5
Q ss_pred cEEEEEeCCCcEEEEECCCCceEEEEeccCCC-EEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC
Q 000743 409 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAP-VRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN 487 (1313)
Q Consensus 409 ~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~-V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~ 487 (1313)
..++.++.|+.+..+|..+|+.+.......+. ..+... . +..++.++.|+.+.++|.++++.+..++.+..
T Consensus 280 ~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~------g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~ 351 (377)
T TIGR03300 280 NRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--V------GGYLVVGDFEGYLHWLSREDGSFVARLKTDGS 351 (377)
T ss_pred CEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--E------CCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC
Confidence 57778889999999999999887665322221 111111 1 46788899999999999999999988876654
Q ss_pred CcE-EEEEcCCCCEEEEEecCCCCCCCCCCEEEEE
Q 000743 488 YPA-KVVWDCPRGYIACLCRDHSRTSDAVDVLFIW 521 (1313)
Q Consensus 488 ~V~-sVafsPdg~~Latgs~DlsGssD~DgtIrVW 521 (1313)
.+. .-.+. + +.|+.++.| |.|+.+
T Consensus 352 ~~~~sp~~~-~-~~l~v~~~d--------G~l~~~ 376 (377)
T TIGR03300 352 GIASPPVVV-G-DGLLVQTRD--------GDLYAF 376 (377)
T ss_pred ccccCCEEE-C-CEEEEEeCC--------ceEEEe
Confidence 332 22332 2 346666665 888765
No 271
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.01 E-value=0.027 Score=76.06 Aligned_cols=117 Identities=14% Similarity=0.150 Sum_probs=82.4
Q ss_pred EEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEec-------------c--------CCCEEEEEECC
Q 000743 390 VLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH-------------H--------VAPVRQIILSP 448 (1313)
Q Consensus 390 V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~g-------------H--------~~~V~sV~fsP 448 (1313)
...++++| || ..++++-+.++.|++||+.++......-+ + -.....+++.+
T Consensus 742 P~GIavsp-----dG---~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~ 813 (1057)
T PLN02919 742 PSGISLSP-----DL---KELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK 813 (1057)
T ss_pred ccEEEEeC-----CC---CEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC
Confidence 45688874 55 24777888889999999987653211100 0 01235788888
Q ss_pred CCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEec-------------CCCCCcEEEEEcCCCCEEEEEecCCCCCCCCC
Q 000743 449 PQTEHPWSDCFLSVGEDFSVALASLETLRVERMFP-------------GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAV 515 (1313)
Q Consensus 449 d~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~-------------gH~~~V~sVafsPdg~~Latgs~DlsGssD~D 515 (1313)
+ |+.+++-+.+++|++||..++....... ++-..+..++++++|+.+++-+.+
T Consensus 814 d------G~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N-------- 879 (1057)
T PLN02919 814 D------GQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN-------- 879 (1057)
T ss_pred C------CcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC--------
Confidence 8 6889999999999999998776553321 112257899999999877764443
Q ss_pred CEEEEEECCCCcE
Q 000743 516 DVLFIWDVKTGAR 528 (1313)
Q Consensus 516 gtIrVWDlrTG~l 528 (1313)
++|++||+++++.
T Consensus 880 n~Irvid~~~~~~ 892 (1057)
T PLN02919 880 SLIRYLDLNKGEA 892 (1057)
T ss_pred CEEEEEECCCCcc
Confidence 8999999999865
No 272
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.00 E-value=0.002 Score=71.48 Aligned_cols=74 Identities=20% Similarity=0.345 Sum_probs=62.7
Q ss_pred cEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCc-eEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCe
Q 000743 389 AVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN-LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFS 467 (1313)
Q Consensus 389 ~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~-~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~Dgt 467 (1313)
.|.+++-||+ .+++++.|+.||.+-+||.+... +...+..|..+++.|-|||.. +..++++++||+
T Consensus 181 ~v~~l~~hp~--------qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~-----p~~Lft~sedGs 247 (319)
T KOG4714|consen 181 AVTALCSHPA--------QQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKN-----PEHLFTCSEDGS 247 (319)
T ss_pred cchhhhCCcc--------cccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCC-----chheeEecCCCc
Confidence 4999998872 35789999999999999999875 344577899999999999986 478999999999
Q ss_pred EEEEECCC
Q 000743 468 VALASLET 475 (1313)
Q Consensus 468 V~LWDL~t 475 (1313)
+--||-.+
T Consensus 248 lw~wdas~ 255 (319)
T KOG4714|consen 248 LWHWDAST 255 (319)
T ss_pred EEEEcCCC
Confidence 99999763
No 273
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.94 E-value=0.0026 Score=77.96 Aligned_cols=169 Identities=17% Similarity=0.152 Sum_probs=115.8
Q ss_pred ceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCc
Q 000743 327 KIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWS 406 (1313)
Q Consensus 327 ~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~ 406 (1313)
....|..+..... .+++|+.||-+++.+.+.........-.-...+-..-++|.||++.|.-+.|+.
T Consensus 15 vkL~c~~WNke~g----yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe--------- 81 (1189)
T KOG2041|consen 15 VKLHCAEWNKESG----YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE--------- 81 (1189)
T ss_pred ceEEEEEEcccCC----eEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc---------
Confidence 3455655555555 499999999999977754332211110112233345678999999999999984
Q ss_pred cCcEEEEEeCCCcEEEEECCCCceEEEEe--ccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEE-EEec
Q 000743 407 FNEVLVSGSMDCSIRIWDLGSGNLITVMH--HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVE-RMFP 483 (1313)
Q Consensus 407 ~~~~LaSGS~DgtIrVWDl~tg~~l~t~~--gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l-~~l~ 483 (1313)
..+.|-|...+|.|.+|-+..|.-...+. ...+-|.++.|+.+ |..|+-+-.||.|.+=.++..+.- ..+.
T Consensus 82 ~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~d------G~kIcIvYeDGavIVGsvdGNRIwgKeLk 155 (1189)
T KOG2041|consen 82 NNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLD------GTKICIVYEDGAVIVGSVDGNRIWGKELK 155 (1189)
T ss_pred ccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCC------CcEEEEEEccCCEEEEeeccceecchhcc
Confidence 34678888899999999988775332221 23557899999999 788999999999988777644322 1233
Q ss_pred CCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECC
Q 000743 484 GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 524 (1313)
Q Consensus 484 gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlr 524 (1313)
|. ....+.|++|.+.++.+-.+ |.+.++|..
T Consensus 156 g~--~l~hv~ws~D~~~~Lf~~an--------ge~hlydnq 186 (1189)
T KOG2041|consen 156 GQ--LLAHVLWSEDLEQALFKKAN--------GETHLYDNQ 186 (1189)
T ss_pred hh--eccceeecccHHHHHhhhcC--------CcEEEeccc
Confidence 22 23478899998877654443 889999874
No 274
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=96.92 E-value=0.0047 Score=70.86 Aligned_cols=134 Identities=15% Similarity=0.245 Sum_probs=93.0
Q ss_pred EEEEE-ecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCc-e--EEEEecc-----CCCEEEEEECCC
Q 000743 379 SRQYF-LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN-L--ITVMHHH-----VAPVRQIILSPP 449 (1313)
Q Consensus 379 ~~~~L-~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~-~--l~t~~gH-----~~~V~sV~fsPd 449 (1313)
|.+.+ .+|+.-|+++.++ .|+ +.++|+ +|=.|-+|++.-.. + +.-.+.| +.-|++..|||.
T Consensus 155 prRv~aNaHtyhiNSIS~N-----sD~----Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~ 224 (433)
T KOG1354|consen 155 PRRVYANAHTYHINSISVN-----SDK----ETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPH 224 (433)
T ss_pred eeeeccccceeEeeeeeec-----Ccc----ceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHh
Confidence 33444 4788889999987 344 677765 67889999987322 1 2222323 346889999998
Q ss_pred CCCCCCCCEEEEEeCCCeEEEEECCCCcEE----EEec------------CCCCCcEEEEEcCCCCEEEEEecCCCCCCC
Q 000743 450 QTEHPWSDCFLSVGEDFSVALASLETLRVE----RMFP------------GHPNYPAKVVWDCPRGYIACLCRDHSRTSD 513 (1313)
Q Consensus 450 ~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l----~~l~------------gH~~~V~sVafsPdg~~Latgs~DlsGssD 513 (1313)
.+ +.|+-.+..|+|+|-|+|....- ..+. .--..|..+.|++.|+|+++- |
T Consensus 225 ~c-----n~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsR--D------ 291 (433)
T KOG1354|consen 225 HC-----NVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSR--D------ 291 (433)
T ss_pred Hc-----cEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEe--c------
Confidence 74 78888889999999999843210 1111 111247899999999999973 2
Q ss_pred CCCEEEEEEC-CCCcEEEEEeCCC
Q 000743 514 AVDVLFIWDV-KTGARERVLRGTA 536 (1313)
Q Consensus 514 ~DgtIrVWDl-rTG~lv~~L~GH~ 536 (1313)
. -+|++||+ ...+.+.+++-|.
T Consensus 292 y-ltvk~wD~nme~~pv~t~~vh~ 314 (433)
T KOG1354|consen 292 Y-LTVKLWDLNMEAKPVETYPVHE 314 (433)
T ss_pred c-ceeEEEeccccCCcceEEeehH
Confidence 1 59999999 5567788887775
No 275
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=96.92 E-value=0.74 Score=55.38 Aligned_cols=142 Identities=15% Similarity=0.229 Sum_probs=105.8
Q ss_pred ecCCccEEEEEEeccccCCCCCccCcEEEEEeCCC-cEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEE
Q 000743 384 LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDC-SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSV 462 (1313)
Q Consensus 384 ~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~Dg-tIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSg 462 (1313)
.+|.+.|.-..+. .++ +-++-|..|+ .+-|+|.++++.. ++...-+.|.++..+|+ |+.++.+
T Consensus 356 v~~~~~VrY~r~~-----~~~----e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~av~vs~d------GK~~vva 419 (668)
T COG4946 356 VGKKGGVRYRRIQ-----VDP----EGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEAVKVSPD------GKKVVVA 419 (668)
T ss_pred cCCCCceEEEEEc-----cCC----cceEEeccCCceEEEEecCCceEE-EeeCCccceEEEEEcCC------CcEEEEE
Confidence 4788888877765 222 4688899999 8999999888754 45557788999999999 7888887
Q ss_pred eCCCeEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEE
Q 000743 463 GEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFD 542 (1313)
Q Consensus 463 S~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~ 542 (1313)
-+...+-+.|+++++....-+...+-|+.+.|||++++++-+--+ |-. ...|+++|+.+++....- ..++..
T Consensus 420 Ndr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~--gy~--tq~Iklydm~~~Kiy~vT-T~ta~D--- 491 (668)
T COG4946 420 NDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPE--GYY--TQSIKLYDMDGGKIYDVT-TPTAYD--- 491 (668)
T ss_pred cCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCc--cee--eeeEEEEecCCCeEEEec-CCcccc---
Confidence 777889999999998755444455678999999999999987654 322 268999999988765443 222222
Q ss_pred eeeccccc
Q 000743 543 HFCKGISM 550 (1313)
Q Consensus 543 ~~c~~~s~ 550 (1313)
|.+++.+
T Consensus 492 -fsPaFD~ 498 (668)
T COG4946 492 -FSPAFDP 498 (668)
T ss_pred -cCcccCC
Confidence 6665555
No 276
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.002 Score=75.88 Aligned_cols=170 Identities=18% Similarity=0.202 Sum_probs=115.9
Q ss_pred cCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCC
Q 000743 324 HKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAK 403 (1313)
Q Consensus 324 ~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pD 403 (1313)
-|++.|+-+.+.. .. .++.++.||.++. |.... ...-+.++.+..|-+.|.+++.+ .|
T Consensus 7 mhrd~i~hv~~tk-a~----fiiqASlDGh~KF--WkKs~----------isGvEfVKhFraHL~~I~sl~~S-----~d 64 (558)
T KOG0882|consen 7 MHRDVITHVFPTK-AK----FIIQASLDGHKKF--WKKSR----------ISGVEFVKHFRAHLGVILSLAVS-----YD 64 (558)
T ss_pred cccceeeeEeeeh-hh----eEEeeecchhhhh--cCCCC----------ccceeehhhhHHHHHHHHhhhcc-----cc
Confidence 3666666532222 22 3889999999999 64211 01113456667777777777765 44
Q ss_pred CCccCcEEEEEeC-CCcEEEEECCCCce------------------------------------------------EEEE
Q 000743 404 GWSFNEVLVSGSM-DCSIRIWDLGSGNL------------------------------------------------ITVM 434 (1313)
Q Consensus 404 Gr~~~~~LaSGS~-DgtIrVWDl~tg~~------------------------------------------------l~t~ 434 (1313)
| -++.|++. |+.+|++|+.+-.. ...-
T Consensus 65 g----~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fk 140 (558)
T KOG0882|consen 65 G----WLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFK 140 (558)
T ss_pred c----eeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceec
Confidence 5 67777666 88888887753110 0111
Q ss_pred eccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCC------CcE---------EEEecCCCCCcEEEEEcCCCC
Q 000743 435 HHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET------LRV---------ERMFPGHPNYPAKVVWDCPRG 499 (1313)
Q Consensus 435 ~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t------~~~---------l~~l~gH~~~V~sVafsPdg~ 499 (1313)
.-|..+|.++.+.|. ++.++|....|.|.-|..+. .+. +..+......+.++.|+|++.
T Consensus 141 klH~sPV~~i~y~qa------~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~ 214 (558)
T KOG0882|consen 141 KLHFSPVKKIRYNQA------GDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA 214 (558)
T ss_pred ccccCceEEEEeecc------ccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccC
Confidence 237889999999988 78999999999999999872 111 122333344678999999999
Q ss_pred EEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEe
Q 000743 500 YIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 533 (1313)
Q Consensus 500 ~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~ 533 (1313)
.+.+-+.| .+|+++++++|++++.+.
T Consensus 215 qistl~~D--------rkVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 215 QISTLNPD--------RKVRGFVFKTGKLVQEID 240 (558)
T ss_pred cccccCcc--------cEEEEEEeccchhhhhhh
Confidence 99986554 999999999999988765
No 277
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.81 E-value=0.0094 Score=75.32 Aligned_cols=139 Identities=14% Similarity=0.187 Sum_probs=106.0
Q ss_pred EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEe--------
Q 000743 344 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGS-------- 415 (1313)
Q Consensus 344 ~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS-------- 415 (1313)
.+.+|...|+|.+. |..+.+.++++..|++.|.++..+ | +.|+|+|
T Consensus 189 ~lf~G~t~G~V~Lr---------------D~~s~~~iht~~aHs~siSDfDv~-------G----NlLitCG~S~R~~~l 242 (1118)
T KOG1275|consen 189 NLFCGDTRGTVFLR---------------DPNSFETIHTFDAHSGSISDFDVQ-------G----NLLITCGYSMRRYNL 242 (1118)
T ss_pred EEEeecccceEEee---------------cCCcCceeeeeeccccceeeeecc-------C----CeEEEeecccccccc
Confidence 47888888999883 335667899999999999988775 3 8899988
Q ss_pred -CCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECC---CC-cEEEEecCCCCCcE
Q 000743 416 -MDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE---TL-RVERMFPGHPNYPA 490 (1313)
Q Consensus 416 -~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~---t~-~~l~~l~gH~~~V~ 490 (1313)
.|.-|+|||++..+.+.-+.-+.++ .-+.|+|.-+ ..++.++..|...+-|.. +. .-++.+......+.
T Consensus 243 ~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~-----t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~ 316 (1118)
T KOG1275|consen 243 AMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLT-----TRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGIS 316 (1118)
T ss_pred cccchhhhhhhhhhhccCCcccccCc-hhhhhccccc-----ceEEEEecccceeeccccccCCCccceeEEccCCCcce
Confidence 4667899999998877776666665 6678898753 567777888999998832 22 12334443444589
Q ss_pred EEEEcCCCCEEEEEecCCCCCCCCCCEEEEEE
Q 000743 491 KVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 522 (1313)
Q Consensus 491 sVafsPdg~~Latgs~DlsGssD~DgtIrVWD 522 (1313)
.+.++++++.++.|-.+ |.|.+|-
T Consensus 317 ~fDiSsn~~alafgd~~--------g~v~~wa 340 (1118)
T KOG1275|consen 317 AFDISSNGDALAFGDHE--------GHVNLWA 340 (1118)
T ss_pred eEEecCCCceEEEeccc--------CcEeeec
Confidence 99999999999987655 9999997
No 278
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=96.73 E-value=0.024 Score=65.32 Aligned_cols=118 Identities=18% Similarity=0.277 Sum_probs=86.6
Q ss_pred CccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCce-EE---------------EEeccCCCEEEEEECCCC
Q 000743 387 TGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNL-IT---------------VMHHHVAPVRQIILSPPQ 450 (1313)
Q Consensus 387 ~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~-l~---------------t~~gH~~~V~sV~fsPd~ 450 (1313)
+.-|++-.|||. .-++++-.|.-|+||+-|++...+ .. -|..--..|..+.|++.
T Consensus 213 teVITsaEFhp~--------~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~s- 283 (433)
T KOG1354|consen 213 TEVITSAEFHPH--------HCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHS- 283 (433)
T ss_pred HHHHhhhccCHh--------HccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccC-
Confidence 345788889983 237888889999999999984321 00 11222356889999998
Q ss_pred CCCCCCCEEEEEeCCCeEEEEEC-CCCcEEEEecCCCC------------Cc---EEEEEcCCCCEEEEEecCCCCCCCC
Q 000743 451 TEHPWSDCFLSVGEDFSVALASL-ETLRVERMFPGHPN------------YP---AKVVWDCPRGYIACLCRDHSRTSDA 514 (1313)
Q Consensus 451 ~~~~~g~~LaSgS~DgtV~LWDL-~t~~~l~~l~gH~~------------~V---~sVafsPdg~~Latgs~DlsGssD~ 514 (1313)
|++++|-.- -+|++||+ ...+++.+++-|.. .| ..++|+.++.+++||+..
T Consensus 284 -----GryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~------- 350 (433)
T KOG1354|consen 284 -----GRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYN------- 350 (433)
T ss_pred -----CcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEeccccc-------
Confidence 789987542 69999999 56677777776632 22 478999999999998776
Q ss_pred CCEEEEEECCCCc
Q 000743 515 VDVLFIWDVKTGA 527 (1313)
Q Consensus 515 DgtIrVWDlrTG~ 527 (1313)
+.+++++...|.
T Consensus 351 -n~frvf~~~~gs 362 (433)
T KOG1354|consen 351 -NVFRVFNLARGS 362 (433)
T ss_pred -ceEEEecCCCCc
Confidence 899999976654
No 279
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.70 E-value=0.013 Score=73.59 Aligned_cols=154 Identities=18% Similarity=0.177 Sum_probs=106.6
Q ss_pred cccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCC
Q 000743 339 FYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDC 418 (1313)
Q Consensus 339 ~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~Dg 418 (1313)
.++..-++.|+++|.+.+...+ +.+ .+...|+.. . .+| .+++|||.||
T Consensus 46 av~~~~~~~GtH~g~v~~~~~~----------------~~~-~~~~~~s~~------~-----~~G----ey~asCS~DG 93 (846)
T KOG2066|consen 46 AVHDKFFALGTHRGAVYLTTCQ----------------GNP-KTNFDHSSS------I-----LEG----EYVASCSDDG 93 (846)
T ss_pred HhhcceeeeccccceEEEEecC----------------Ccc-ccccccccc------c-----cCC----ceEEEecCCC
Confidence 3444459999999999995443 112 222334332 1 345 8999999999
Q ss_pred cEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECC---CCcEEEEecCCCCCcEEEEEc
Q 000743 419 SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE---TLRVERMFPGHPNYPAKVVWD 495 (1313)
Q Consensus 419 tIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~---t~~~l~~l~gH~~~V~sVafs 495 (1313)
+|.|-.+.+.+..+++. ...++.+|+++|+-. +...+.+++||.-| +.++.-+ ....+ .+..-.++|.+++|+
T Consensus 94 kv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~-~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~ 169 (846)
T KOG2066|consen 94 KVVIGSLFTDDEITQYD-FKRPIKSIALHPDFS-RQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWR 169 (846)
T ss_pred cEEEeeccCCccceeEe-cCCcceeEEeccchh-hhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEec
Confidence 99999999998887776 567899999999821 23356899999888 7666532 11222 344446789999996
Q ss_pred CCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCce
Q 000743 496 CPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHS 539 (1313)
Q Consensus 496 Pdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~V 539 (1313)
|++|+-+.. --|+|||..+++.+..+.-....+
T Consensus 170 --g~lIAWand---------~Gv~vyd~~~~~~l~~i~~p~~~~ 202 (846)
T KOG2066|consen 170 --GNLIAWAND---------DGVKVYDTPTRQRLTNIPPPSQSV 202 (846)
T ss_pred --CcEEEEecC---------CCcEEEeccccceeeccCCCCCCC
Confidence 567876543 458999999988877766444444
No 280
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.67 E-value=0.91 Score=49.86 Aligned_cols=102 Identities=19% Similarity=0.107 Sum_probs=70.7
Q ss_pred cEEEEEeCCCcEEEEECCCCceEEEEeccCCC----------E-EEEEECCCCCCCCCCCEEEEEeCCCe-EEEEECCCC
Q 000743 409 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAP----------V-RQIILSPPQTEHPWSDCFLSVGEDFS-VALASLETL 476 (1313)
Q Consensus 409 ~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~----------V-~sV~fsPd~~~~~~g~~LaSgS~Dgt-V~LWDL~t~ 476 (1313)
..++.+..++.|..+|+.+|+.+..+..+... + ..+.+. + + .++.++.++. +.+ |++++
T Consensus 123 ~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~-~v~~~~~~g~~~~~-d~~tg 193 (238)
T PF13360_consen 123 DRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-D------G-RVYVSSGDGRVVAV-DLATG 193 (238)
T ss_dssp TEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-T------T-EEEEECCTSSEEEE-ETTTT
T ss_pred CEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-C------C-EEEEEcCCCeEEEE-ECCCC
Confidence 67888888999999999999998888764422 1 222222 2 3 5566666664 666 99999
Q ss_pred cEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEE
Q 000743 477 RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 530 (1313)
Q Consensus 477 ~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~ 530 (1313)
+.+..... ..+.. ...+++..|++++.+ +.++.||.+||+.+-
T Consensus 194 ~~~w~~~~--~~~~~-~~~~~~~~l~~~~~~--------~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 194 EKLWSKPI--SGIYS-LPSVDGGTLYVTSSD--------GRLYALDLKTGKVVW 236 (238)
T ss_dssp EEEEEECS--S-ECE-CEECCCTEEEEEETT--------TEEEEEETTTTEEEE
T ss_pred CEEEEecC--CCccC-CceeeCCEEEEEeCC--------CEEEEEECCCCCEEe
Confidence 97754442 22222 145678888887655 999999999998764
No 281
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.59 E-value=0.013 Score=71.65 Aligned_cols=76 Identities=16% Similarity=0.080 Sum_probs=62.4
Q ss_pred cCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCC
Q 000743 437 HVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVD 516 (1313)
Q Consensus 437 H~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~Dg 516 (1313)
..+.|.+.+++|+ .+.++-|+.||+|.+||...+... +..+.-.++.++|||+|.++++|+.- |
T Consensus 258 L~s~v~~ca~sp~------E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~q--------G 321 (545)
T PF11768_consen 258 LPSQVICCARSPS------EDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQ--------G 321 (545)
T ss_pred cCCcceEEecCcc------cceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCC--------c
Confidence 6788999999999 588999999999999998765333 33344567899999999999998766 9
Q ss_pred EEEEEECCCCcE
Q 000743 517 VLFIWDVKTGAR 528 (1313)
Q Consensus 517 tIrVWDlrTG~l 528 (1313)
.+.+||+.-...
T Consensus 322 elQ~FD~ALspi 333 (545)
T PF11768_consen 322 ELQCFDMALSPI 333 (545)
T ss_pred eEEEEEeecCcc
Confidence 999999875443
No 282
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=96.59 E-value=0.42 Score=56.72 Aligned_cols=123 Identities=19% Similarity=0.319 Sum_probs=82.4
Q ss_pred ccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECC--CCce--EEEEecc------CCCEEEEEECCCCCCCCCCC
Q 000743 388 GAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLG--SGNL--ITVMHHH------VAPVRQIILSPPQTEHPWSD 457 (1313)
Q Consensus 388 ~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~--tg~~--l~t~~gH------~~~V~sV~fsPd~~~~~~g~ 457 (1313)
..-..+.|+| || ....+..-.+++|.++++. +++. +...... ......++++|+ |+
T Consensus 192 ~GPRh~~f~p-----dg---~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispd------g~ 257 (345)
T PF10282_consen 192 SGPRHLAFSP-----DG---KYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPD------GR 257 (345)
T ss_dssp SSEEEEEE-T-----TS---SEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TT------SS
T ss_pred CCCcEEEEcC-----Cc---CEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecC------CC
Confidence 4467888984 55 3455666788999999988 4432 2232211 125788999999 55
Q ss_pred -EEEEEeCCCeEEEEECC--CCc--EEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEEC--CCCcEEE
Q 000743 458 -CFLSVGEDFSVALASLE--TLR--VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV--KTGARER 530 (1313)
Q Consensus 458 -~LaSgS~DgtV~LWDL~--t~~--~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDl--rTG~lv~ 530 (1313)
++++.-.+++|.+|+++ +++ .+..+......++.+.++|+|++|++++.+ +++|.+|++ ++|.+..
T Consensus 258 ~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~-------s~~v~vf~~d~~tG~l~~ 330 (345)
T PF10282_consen 258 FLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQD-------SNTVSVFDIDPDTGKLTP 330 (345)
T ss_dssp EEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETT-------TTEEEEEEEETTTTEEEE
T ss_pred EEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecC-------CCeEEEEEEeCCCCcEEE
Confidence 45666678899999994 333 334444333458999999999999998876 378998865 6787654
Q ss_pred E
Q 000743 531 V 531 (1313)
Q Consensus 531 ~ 531 (1313)
.
T Consensus 331 ~ 331 (345)
T PF10282_consen 331 V 331 (345)
T ss_dssp E
T ss_pred e
Confidence 4
No 283
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=96.54 E-value=0.083 Score=59.38 Aligned_cols=148 Identities=9% Similarity=-0.079 Sum_probs=99.0
Q ss_pred EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCc--cEEEEEEeccccCCCCCccCcEEEEEeCCCcEE
Q 000743 344 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTG--AVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIR 421 (1313)
Q Consensus 344 ~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~--~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIr 421 (1313)
.+..++.|.++++...+.... + +.-|.. .+++++++ +|+ .++++.+....|.
T Consensus 130 ~~~i~sndht~k~~~~~~~s~-------------~----~~~h~~~~~~ns~~~s-----nd~----~~~~~Vgds~~Vf 183 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSN-------------K----FAVHNQNLTQNSLHYS-----NDP----SWGSSVGDSRRVF 183 (344)
T ss_pred ceeeccCCcceeEEEEecCcc-------------c----ceeeccccceeeeEEc-----CCC----ceEEEecCCCcce
Confidence 466677888888844431100 1 111222 27788887 455 8999999999999
Q ss_pred EEECCCC-c-eEE-EEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEE-----EecCCCCCcEEEE
Q 000743 422 IWDLGSG-N-LIT-VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVER-----MFPGHPNYPAKVV 493 (1313)
Q Consensus 422 VWDl~tg-~-~l~-t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~-----~l~gH~~~V~sVa 493 (1313)
.+.+... + .+. ....-++.=.+..|+.. ...||.+..||++.+||+|...... +-+.|.+.++.+.
T Consensus 184 ~y~id~~sey~~~~~~a~t~D~gF~~S~s~~------~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~ 257 (344)
T KOG4532|consen 184 RYAIDDESEYIENIYEAPTSDHGFYNSFSEN------DLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCR 257 (344)
T ss_pred EEEeCCccceeeeeEecccCCCceeeeeccC------cceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEE
Confidence 9998743 3 233 22223344456777766 5789999999999999999754322 2346888999999
Q ss_pred EcCCCC---EEEEEecCCCCCCCCCCEEEEEECCCCcEEEEE
Q 000743 494 WDCPRG---YIACLCRDHSRTSDAVDVLFIWDVKTGARERVL 532 (1313)
Q Consensus 494 fsPdg~---~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L 532 (1313)
|+|.|. .+++-+. +.+.|-|+|++...+.+
T Consensus 258 Fsl~g~lDLLf~sEhf---------s~~hv~D~R~~~~~q~I 290 (344)
T KOG4532|consen 258 FSLYGLLDLLFISEHF---------SRVHVVDTRNYVNHQVI 290 (344)
T ss_pred ecCCCcceEEEEecCc---------ceEEEEEcccCceeeEE
Confidence 998654 3444332 68999999998765544
No 284
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.51 E-value=0.0014 Score=81.75 Aligned_cols=167 Identities=16% Similarity=0.175 Sum_probs=113.2
Q ss_pred CceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEec
Q 000743 318 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 397 (1313)
Q Consensus 318 ~~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP 397 (1313)
...+|..|...-+|+.+..... -++.|++.|.|++ + ++.+|.......+|..+|+-+.-+
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~----hL~vG~~~Geik~--~-------------nv~sG~~e~s~ncH~SavT~vePs- 1152 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTN----HLAVGSHAGEIKI--F-------------NVSSGSMEESVNCHQSAVTLVEPS- 1152 (1516)
T ss_pred cchhhhccccceeeEEeecCCc----eEEeeeccceEEE--E-------------EccCcccccccccccccccccccc-
Confidence 4557778888888866555444 4999999999999 4 345667777888999999987644
Q ss_pred cccCCCCCccCcEEEEEeCCC-cEEEEECC-CCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCC
Q 000743 398 MVGTAKGWSFNEVLVSGSMDC-SIRIWDLG-SGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET 475 (1313)
Q Consensus 398 ~~s~pDGr~~~~~LaSGS~Dg-tIrVWDl~-tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t 475 (1313)
.|| ...|.+.+... -..+|+.. ++.+.++|.+ -.++.|+... ...++. ..-..+.+||+++
T Consensus 1153 ----~dg---s~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~-----q~r~~g-t~~d~a~~YDvqT 1215 (1516)
T KOG1832|consen 1153 ----VDG---STQLTSSSSSSPLSALWDASSTGGPRHSFDE----DKAVKFSNSL-----QFRALG-TEADDALLYDVQT 1215 (1516)
T ss_pred ----CCc---ceeeeeccccCchHHHhccccccCccccccc----cceeehhhhH-----HHHHhc-ccccceEEEeccc
Confidence 566 34455555444 57799986 4667777763 3467777652 122222 2235678999999
Q ss_pred CcEEEE-ecCCC---CCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeC
Q 000743 476 LRVERM-FPGHP---NYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 534 (1313)
Q Consensus 476 ~~~l~~-l~gH~---~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~G 534 (1313)
+.++.+ +.+-. -.-++..|+|++..++- || .+||+|..+.++.+.-
T Consensus 1216 ~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln-----------dG--vLWDvR~~~aIh~FD~ 1265 (1516)
T KOG1832|consen 1216 CSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN-----------DG--VLWDVRIPEAIHRFDQ 1265 (1516)
T ss_pred CcHHHHhcCcchhhhhhccccccCCCcceEee-----------Cc--eeeeeccHHHHhhhhh
Confidence 988776 33221 12268899999998882 24 4799998876666543
No 285
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.41 E-value=0.0029 Score=78.97 Aligned_cols=130 Identities=20% Similarity=0.195 Sum_probs=98.6
Q ss_pred eEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCC
Q 000743 378 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSD 457 (1313)
Q Consensus 378 ~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~ 457 (1313)
++.++|+.|+..-+|++|+- ..++|+.|+..|.|+++++.+|.......+|.++|+-+.-+.+ |.
T Consensus 1092 r~w~~frd~~~~fTc~afs~---------~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~d------gs 1156 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSG---------GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVD------GS 1156 (1516)
T ss_pred ccchhhhccccceeeEEeec---------CCceEEeeeccceEEEEEccCccccccccccccccccccccCC------cc
Confidence 45677889999999999982 3589999999999999999999999999999999999987777 55
Q ss_pred EEEE-EeCCC-eEEEEECCC-CcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEE-Ee
Q 000743 458 CFLS-VGEDF-SVALASLET-LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV-LR 533 (1313)
Q Consensus 458 ~LaS-gS~Dg-tV~LWDL~t-~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~-L~ 533 (1313)
..++ .+... -..+|++.. +...++|.+. .++.|+..-.+-+.|+.. ....+||+.|+..+.+ +.
T Consensus 1157 ~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~ed----~~vkFsn~~q~r~~gt~~--------d~a~~YDvqT~~~l~tylt 1224 (1516)
T KOG1832|consen 1157 TQLTSSSSSSPLSALWDASSTGGPRHSFDED----KAVKFSNSLQFRALGTEA--------DDALLYDVQTCSPLQTYLT 1224 (1516)
T ss_pred eeeeeccccCchHHHhccccccCcccccccc----ceeehhhhHHHHHhcccc--------cceEEEecccCcHHHHhcC
Confidence 4444 44443 478999863 4455555433 478888776555555443 5789999999887766 44
Q ss_pred C
Q 000743 534 G 534 (1313)
Q Consensus 534 G 534 (1313)
+
T Consensus 1225 ~ 1225 (1516)
T KOG1832|consen 1225 D 1225 (1516)
T ss_pred c
Confidence 4
No 286
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.0094 Score=69.73 Aligned_cols=94 Identities=13% Similarity=0.153 Sum_probs=77.6
Q ss_pred EEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEEcCCCC
Q 000743 420 IRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRG 499 (1313)
Q Consensus 420 IrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~ 499 (1313)
|++.+..+.+...-+.+|...|..++|+|.+ ..++..++.+++|+|.|+++..++.++..| ..+++++|+-++.
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~-----~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~ 248 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFN-----EGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDER 248 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccc-----cceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCc
Confidence 6677766666666777888999999999984 237889999999999999999999999888 6899999988775
Q ss_pred -EEEEEecCCCCCCCCCCEEEEEECCCCc
Q 000743 500 -YIACLCRDHSRTSDAVDVLFIWDVKTGA 527 (1313)
Q Consensus 500 -~Latgs~DlsGssD~DgtIrVWDlrTG~ 527 (1313)
+|+.|-.+ |.|+|||+|..+
T Consensus 249 h~IYaGl~n--------G~VlvyD~R~~~ 269 (463)
T KOG1645|consen 249 HVIYAGLQN--------GMVLVYDMRQPE 269 (463)
T ss_pred ceeEEeccC--------ceEEEEEccCCC
Confidence 56654444 999999999754
No 287
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=96.30 E-value=0.14 Score=57.67 Aligned_cols=147 Identities=10% Similarity=-0.102 Sum_probs=90.8
Q ss_pred EEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEE-EEecCCccEEEEEEeccccCCCCCcc
Q 000743 329 VSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQ-YFLGHTGAVLCLAAHRMVGTAKGWSF 407 (1313)
Q Consensus 329 Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~-~L~GH~~~V~sLafsP~~s~pDGr~~ 407 (1313)
+.++.|.++.. ..++.+....|..+..|- ++...++ ....-++.-.+..|+. .
T Consensus 161 ~ns~~~snd~~----~~~~Vgds~~Vf~y~id~-------------~sey~~~~~~a~t~D~gF~~S~s~---------~ 214 (344)
T KOG4532|consen 161 QNSLHYSNDPS----WGSSVGDSRRVFRYAIDD-------------ESEYIENIYEAPTSDHGFYNSFSE---------N 214 (344)
T ss_pred eeeeEEcCCCc----eEEEecCCCcceEEEeCC-------------ccceeeeeEecccCCCceeeeecc---------C
Confidence 44544444444 366767777777754431 1222333 2333445567777873 3
Q ss_pred CcEEEEEeCCCcEEEEECCCCceEEE-----EeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Q 000743 408 NEVLVSGSMDCSIRIWDLGSGNLITV-----MHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMF 482 (1313)
Q Consensus 408 ~~~LaSGS~DgtIrVWDl~tg~~l~t-----~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l 482 (1313)
+..++.++.||++.|||++.....+. -..|.+.++.+.|+|.+. -++++-.-.-+.+.+.|+|+++-.+.+
T Consensus 215 ~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~----lDLLf~sEhfs~~hv~D~R~~~~~q~I 290 (344)
T KOG4532|consen 215 DLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGL----LDLLFISEHFSRVHVVDTRNYVNHQVI 290 (344)
T ss_pred cceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCc----ceEEEEecCcceEEEEEcccCceeeEE
Confidence 46899999999999999996543222 235899999999998642 245555555678999999998765544
Q ss_pred cC-------CC-CCcEEEEEcCCCCEEEEEe
Q 000743 483 PG-------HP-NYPAKVVWDCPRGYIACLC 505 (1313)
Q Consensus 483 ~g-------H~-~~V~sVafsPdg~~Latgs 505 (1313)
.. |. ..+..-.|+.++.-+.+..
T Consensus 291 ~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~ 321 (344)
T KOG4532|consen 291 VIPDDVERKHNTQHIFGTNFNNENESNDVKN 321 (344)
T ss_pred ecCccccccccccccccccccCCCccccccc
Confidence 32 22 2255556666555554433
No 288
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=96.22 E-value=0.017 Score=65.49 Aligned_cols=118 Identities=14% Similarity=0.164 Sum_probs=75.3
Q ss_pred ccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCc--------------------------------------
Q 000743 388 GAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN-------------------------------------- 429 (1313)
Q Consensus 388 ~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~-------------------------------------- 429 (1313)
..|+.+.|.. +. ....++-.+.|++|++|.+....
T Consensus 86 EKin~I~w~~----~t---~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~i 158 (460)
T COG5170 86 EKINAIEWFD----DT---GRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEI 158 (460)
T ss_pred HHhhheeeec----CC---CcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceE
Confidence 3578888862 22 34555666789999999985320
Q ss_pred ----eEEEE-eccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcE---EEEecCCCC-----CcEEEEEcC
Q 000743 430 ----LITVM-HHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRV---ERMFPGHPN-----YPAKVVWDC 496 (1313)
Q Consensus 430 ----~l~t~-~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~---l~~l~gH~~-----~V~sVafsP 496 (1313)
+.+.+ ..|.-.|+++.|+.+ ...++| ++|-.|.+|+++.... +..+..|.- -|++..|||
T Consensus 159 iaa~p~rvyaNaH~yhiNSiS~NsD------~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp 231 (460)
T COG5170 159 IAAKPCRVYANAHPYHINSISFNSD------KETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHP 231 (460)
T ss_pred EEeccceeccccceeEeeeeeecCc------hheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCH
Confidence 01111 346777889999888 355655 5688999999875432 334455532 367889999
Q ss_pred CCCEEEEEecCCCCCCCCCCEEEEEECCCC
Q 000743 497 PRGYIACLCRDHSRTSDAVDVLFIWDVKTG 526 (1313)
Q Consensus 497 dg~~Latgs~DlsGssD~DgtIrVWDlrTG 526 (1313)
....++-= .++. |+|++-|+|..
T Consensus 232 ~~cn~fmY-----SsSk--G~Ikl~DlRq~ 254 (460)
T COG5170 232 EMCNVFMY-----SSSK--GEIKLNDLRQS 254 (460)
T ss_pred hHcceEEE-----ecCC--CcEEehhhhhh
Confidence 76533311 1222 89999999853
No 289
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=96.21 E-value=0.041 Score=68.76 Aligned_cols=147 Identities=14% Similarity=0.150 Sum_probs=103.3
Q ss_pred EEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCC-----C-CCCEEEEEe
Q 000743 390 VLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEH-----P-WSDCFLSVG 463 (1313)
Q Consensus 390 V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~-----~-~g~~LaSgS 463 (1313)
-.++.|+| .| +++-|| ...|.+-|..+.+.++++..|...|+.|.|.|...-+ + ..-.|+++.
T Consensus 18 ~~A~Dw~~-----~G-----LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD 86 (1062)
T KOG1912|consen 18 RNAADWSP-----SG-----LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASAD 86 (1062)
T ss_pred ccccccCc-----cc-----eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEecc
Confidence 44667774 23 566555 5689999999999999999999999999999963211 1 123577777
Q ss_pred CCCeEEEEECCCCcEEEEecCCCCCcEEEEEcCC---C-CEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCce
Q 000743 464 EDFSVALASLETLRVERMFPGHPNYPAKVVWDCP---R-GYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHS 539 (1313)
Q Consensus 464 ~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafsPd---g-~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~V 539 (1313)
..|.|.+||...+..+..+..|..++..++|-|. . .+|++-... .++.+|+..||+.......-. .+
T Consensus 87 ~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~s--------s~lvLwntdtG~k~Wk~~ys~-~i 157 (1062)
T KOG1912|consen 87 ISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGS--------STLVLWNTDTGEKFWKYDYSH-EI 157 (1062)
T ss_pred ccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCC--------cEEEEEEccCCceeeccccCC-cc
Confidence 7899999999999888889989889999998663 3 345543322 699999999999876654322 23
Q ss_pred eEEeeecccccc--eeecc
Q 000743 540 MFDHFCKGISMN--SISGS 556 (1313)
Q Consensus 540 i~~~~c~~~s~~--ivSGS 556 (1313)
+++--|+.++.. ++.|+
T Consensus 158 Ls~f~~DPfd~rh~~~l~s 176 (1062)
T KOG1912|consen 158 LSCFRVDPFDSRHFCVLGS 176 (1062)
T ss_pred eeeeeeCCCCcceEEEEcc
Confidence 332234444432 55554
No 290
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=96.21 E-value=0.11 Score=59.79 Aligned_cols=141 Identities=13% Similarity=0.143 Sum_probs=90.0
Q ss_pred EEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEE
Q 000743 345 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 424 (1313)
Q Consensus 345 LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWD 424 (1313)
+...+.|+.|.+ |++... +-...+......+.++.|+ ||| .+.|.+...|-.|.+|.
T Consensus 64 lC~~yk~~~vqv--wsl~Qp-------------ew~ckIdeg~agls~~~WS-----Pdg---rhiL~tseF~lriTVWS 120 (447)
T KOG4497|consen 64 LCVAYKDPKVQV--WSLVQP-------------EWYCKIDEGQAGLSSISWS-----PDG---RHILLTSEFDLRITVWS 120 (447)
T ss_pred eeeeeccceEEE--EEeecc-------------eeEEEeccCCCcceeeeEC-----CCc---ceEeeeecceeEEEEEE
Confidence 445567889999 664322 2344555667789999999 466 46788888999999999
Q ss_pred CCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEe------------------------------------CCCeE
Q 000743 425 LGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG------------------------------------EDFSV 468 (1313)
Q Consensus 425 l~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS------------------------------------~DgtV 468 (1313)
+.+.+....-. -...+..++|+|++ ++.+-.+ +++.+
T Consensus 121 L~t~~~~~~~~-pK~~~kg~~f~~dg------~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~l 193 (447)
T KOG4497|consen 121 LNTQKGYLLPH-PKTNVKGYAFHPDG------QFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWL 193 (447)
T ss_pred eccceeEEecc-cccCceeEEECCCC------ceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEE
Confidence 99877643321 23356888899984 2222111 12345
Q ss_pred EEEECCCCcEEEEecCCC-CCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCC
Q 000743 469 ALASLETLRVERMFPGHP-NYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 525 (1313)
Q Consensus 469 ~LWDL~t~~~l~~l~gH~-~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrT 525 (1313)
.+||---.-.+..+ |. -.+..+.|+|.+++|++|+.| +.+||-+--|
T Consensus 194 aVwd~~Leykv~aY--e~~lG~k~v~wsP~~qflavGsyD--------~~lrvlnh~t 241 (447)
T KOG4497|consen 194 AVWDNVLEYKVYAY--ERGLGLKFVEWSPCNQFLAVGSYD--------QMLRVLNHFT 241 (447)
T ss_pred EEecchhhheeeee--eeccceeEEEeccccceEEeeccc--------hhhhhhceee
Confidence 55653211122222 22 357889999999999997766 8888866444
No 291
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.15 E-value=0.015 Score=42.72 Aligned_cols=39 Identities=26% Similarity=0.501 Sum_probs=34.6
Q ss_pred CceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEE
Q 000743 428 GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALAS 472 (1313)
Q Consensus 428 g~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWD 472 (1313)
++++..+..|...|+++.|+|. +..+++++.|+.+++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPD------GKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCC------CCEEEEecCCCeEEEcC
Confidence 4567788889999999999998 58999999999999996
No 292
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=96.11 E-value=0.38 Score=64.30 Aligned_cols=206 Identities=11% Similarity=0.057 Sum_probs=121.9
Q ss_pred CceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCC
Q 000743 326 EKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGW 405 (1313)
Q Consensus 326 ~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr 405 (1313)
.+.|.+..|+.+.. .++++..+|+|.++..+.. .+....+.+..+ ...|.+.+||| |+
T Consensus 75 ~~~ivs~~yl~d~~----~l~~~~~~Gdi~~~~~~~~---------~~~~~~E~VG~v---d~GI~a~~WSP-----D~- 132 (928)
T PF04762_consen 75 NDKIVSFQYLADSE----SLCIALASGDIILVREDPD---------PDEDEIEIVGSV---DSGILAASWSP-----DE- 132 (928)
T ss_pred CCcEEEEEeccCCC----cEEEEECCceEEEEEccCC---------CCCceeEEEEEE---cCcEEEEEECC-----Cc-
Confidence 46677766666665 5999999999999655420 011111223222 45799999995 55
Q ss_pred ccCcEEEEEeCCCcEEEEECCC-----------------------CceEEEEecc------------------------C
Q 000743 406 SFNEVLVSGSMDCSIRIWDLGS-----------------------GNLITVMHHH------------------------V 438 (1313)
Q Consensus 406 ~~~~~LaSGS~DgtIrVWDl~t-----------------------g~~l~t~~gH------------------------~ 438 (1313)
+.|+-...++++.+-+-.- |+....|+|- .
T Consensus 133 ---Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~d 209 (928)
T PF04762_consen 133 ---ELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWD 209 (928)
T ss_pred ---CEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccC
Confidence 8888888888888775320 1111223221 1
Q ss_pred CCEEEEEECCCCCCCCCCCEEEEEeC----C--CeEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCC
Q 000743 439 APVRQIILSPPQTEHPWSDCFLSVGE----D--FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTS 512 (1313)
Q Consensus 439 ~~V~sV~fsPd~~~~~~g~~LaSgS~----D--gtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGss 512 (1313)
..-..+.|-.| |.+|+..+- + +.+|+|+- .|....+-..-.+--.+++|.|.|++|++.-.-
T Consensus 210 d~~~~ISWRGD------G~yFAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~----- 277 (928)
T PF04762_consen 210 DGRVRISWRGD------GEYFAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRL----- 277 (928)
T ss_pred CCceEEEECCC------CcEEEEEEEEcCCCceeEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEEc-----
Confidence 12234555555 788887764 2 57999994 466544444222223489999999999986652
Q ss_pred CCCCEEEEEECCCCcEEEEEeC----CCCceeEEeeecccccceeecccccCCcccccCcccccCCCcEEEEeCCcccc
Q 000743 513 DAVDVLFIWDVKTGARERVLRG----TASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDER 587 (1313)
Q Consensus 513 D~DgtIrVWDlrTG~lv~~L~G----H~a~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~~~~~ 587 (1313)
.....|..|+ |+|-....+.- ....|....|.. ++. ++.+--..+|.+|..+|++.
T Consensus 278 ~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~-------ds~-----------iLAv~~~~~vqLWt~~NYHW 337 (928)
T PF04762_consen 278 PDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNS-------DSE-----------ILAVWLEDRVQLWTRSNYHW 337 (928)
T ss_pred CCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECC-------CCC-----------EEEEEecCCceEEEeeCCEE
Confidence 1125788887 67766555442 334454454532 122 12222234599998888763
No 293
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.98 E-value=0.018 Score=42.31 Aligned_cols=39 Identities=21% Similarity=0.401 Sum_probs=33.5
Q ss_pred CcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEE
Q 000743 476 LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 522 (1313)
Q Consensus 476 ~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWD 522 (1313)
+++...+..|...+.++.|++.+.++++++.| +.+++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d--------~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDD--------GTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCC--------CeEEEcC
Confidence 35667778888899999999999999998776 9999996
No 294
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=95.96 E-value=10 Score=51.08 Aligned_cols=99 Identities=15% Similarity=0.084 Sum_probs=75.1
Q ss_pred cceeEEEEEeccCCeEEEEcccCCCcCccCCCCccccccccceeeecccccccceEEEEeecCcEEEEEEeceeEEEecc
Q 000743 45 MGKHYGLMVDSVGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRLLG 124 (1313)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (1313)
.|..++++|=+.|.+=+++...+ .+.. ..|.|- -++.|-.+.+-+.|+.++|++-++..+.=+=.
T Consensus 85 ~d~~~l~~~~~~Gdi~~~~~~~~----~~~~--------~~E~VG---~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~ 149 (928)
T PF04762_consen 85 ADSESLCIALASGDIILVREDPD----PDED--------EIEIVG---SVDSGILAASWSPDEELLALVTGEGNLLLMTR 149 (928)
T ss_pred cCCCcEEEEECCceEEEEEccCC----CCCc--------eeEEEE---EEcCcEEEEEECCCcCEEEEEeCCCEEEEEec
Confidence 45678889999999988876552 2222 555552 45677888888999999999999888888877
Q ss_pred CCceeeEEeecccceeecCC--------CcceeEEeeEEEee
Q 000743 125 SGSTIGEICFVDNLFCLEGG--------STNSYVIGAMFLER 158 (1313)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~g~~l~~ 158 (1313)
.-.+|-|+.+-.+.+....+ .||+|=-||.-.|+
T Consensus 150 ~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~ 191 (928)
T PF04762_consen 150 DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAAR 191 (928)
T ss_pred cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhh
Confidence 78899999998887765332 48999888888664
No 295
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.92 E-value=0.42 Score=47.73 Aligned_cols=100 Identities=13% Similarity=0.093 Sum_probs=67.3
Q ss_pred EEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEE
Q 000743 390 VLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVA 469 (1313)
Q Consensus 390 V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~ 469 (1313)
|+++++.. ...|| .+.|+.||.|..||+|+- .+.+..+. -++.|+++.-... ..|+.+-.+|+|.
T Consensus 2 V~al~~~d--~d~dg---~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~-------~~F~Y~l~NGTVG 66 (111)
T PF14783_consen 2 VTALCLFD--FDGDG---ENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGG-------GRFAYALANGTVG 66 (111)
T ss_pred eeEEEEEe--cCCCC---cceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCC-------CEEEEEecCCEEE
Confidence 67777764 12334 478999999999999984 46777777 5667888877665 6799999999999
Q ss_pred EEECCCCcEEEEecCCCCCcEEEEE-cCCC---CEEEEEecC
Q 000743 470 LASLETLRVERMFPGHPNYPAKVVW-DCPR---GYIACLCRD 507 (1313)
Q Consensus 470 LWDL~t~~~l~~l~gH~~~V~sVaf-sPdg---~~Latgs~D 507 (1313)
+|+- ..-+...+... .+.++++ +.++ .-|++|..+
T Consensus 67 vY~~--~~RlWRiKSK~-~~~~~~~~D~~gdG~~eLI~Gwsn 105 (111)
T PF14783_consen 67 VYDR--SQRLWRIKSKN-QVTSMAFYDINGDGVPELIVGWSN 105 (111)
T ss_pred EEeC--cceeeeeccCC-CeEEEEEEcCCCCCceEEEEEecC
Confidence 9974 23333443322 3555544 4343 257776665
No 296
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.92 E-value=0.0029 Score=77.27 Aligned_cols=189 Identities=17% Similarity=0.198 Sum_probs=117.9
Q ss_pred EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEe----CCCc
Q 000743 344 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGS----MDCS 419 (1313)
Q Consensus 344 ~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS----~Dgt 419 (1313)
.++.|..+|.|.+..+. .. +. .......+|....++++|++ -| .++|+.|- .|..
T Consensus 72 IlavG~atG~I~l~s~r--~~---hd--------Ss~E~tp~~ar~Ct~lAwne----LD----tn~LAagldkhrnds~ 130 (783)
T KOG1008|consen 72 ILAVGSATGNISLLSVR--HP---HD--------SSAEVTPGYARPCTSLAWNE----LD----TNHLAAGLDKHRNDSS 130 (783)
T ss_pred hhhhccccCceEEeecC--Cc---cc--------ccceeccccccccccccccc----cc----HHHHHhhhhhhcccCC
Confidence 37788999999995542 11 11 12334567888899999986 23 36777664 4678
Q ss_pred EEEEECCCC--ceEE--EEec-cCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEE
Q 000743 420 IRIWDLGSG--NLIT--VMHH-HVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVW 494 (1313)
Q Consensus 420 IrVWDl~tg--~~l~--t~~g-H~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVaf 494 (1313)
+.|||+.++ .+.. .|.+ ......+++|..+ .+++.+|...+.++++|+|... .....-.+..+..+..
T Consensus 131 ~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd------~klvlaGm~sr~~~ifdlRqs~-~~~~svnTk~vqG~tV 203 (783)
T KOG1008|consen 131 LKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRD------TKLVLAGMTSRSVHIFDLRQSL-DSVSSVNTKYVQGITV 203 (783)
T ss_pred ccceecccccCCCccccccccccccCccccccccC------cchhhcccccchhhhhhhhhhh-hhhhhhhhhhccccee
Confidence 999999876 2222 2222 3345668888766 4789999999999999998322 1111112335567778
Q ss_pred cC-CCCEEEEEecCCCCCCCCCCEEEEEE-CCCC-cEEEEEeCCCC----ceeEEeeecccccceeecccccCCcccccC
Q 000743 495 DC-PRGYIACLCRDHSRTSDAVDVLFIWD-VKTG-ARERVLRGTAS----HSMFDHFCKGISMNSISGSVLNGNTSVSSL 567 (1313)
Q Consensus 495 sP-dg~~Latgs~DlsGssD~DgtIrVWD-lrTG-~lv~~L~GH~a----~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~ 567 (1313)
+| ..+|+++- . ||.|.+|| .++- .+++.+..... .+....||+.. ++.
T Consensus 204 dp~~~nY~cs~-------~--dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr----------------tgl 258 (783)
T KOG1008|consen 204 DPFSPNYFCSN-------S--DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR----------------TGL 258 (783)
T ss_pred cCCCCCceecc-------c--cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC----------------cch
Confidence 88 67788742 2 38999999 3332 23333333232 36667788722 223
Q ss_pred cccccCC-CcEEEEeCCcc
Q 000743 568 LLPIHED-GTFRQSQIQND 585 (1313)
Q Consensus 568 lvs~s~D-gtIr~Wdl~~~ 585 (1313)
+..+.+| ++|++.++...
T Consensus 259 la~l~RdS~tIrlydi~~v 277 (783)
T KOG1008|consen 259 LAVLSRDSITIRLYDICVV 277 (783)
T ss_pred hhhhccCcceEEEeccccc
Confidence 3445556 48999998643
No 297
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=95.87 E-value=0.1 Score=66.48 Aligned_cols=140 Identities=14% Similarity=0.129 Sum_probs=98.9
Q ss_pred cCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcE
Q 000743 341 APYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSI 420 (1313)
Q Consensus 341 sP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtI 420 (1313)
.|+.++.|+....+...++ .+.+..+...--.+.|.-+..+ .+++..|..-|+|
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl---------------~~~~e~r~~~v~a~~v~imR~N-----------nr~lf~G~t~G~V 199 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDL---------------NTEKETRTTNVSASGVTIMRYN-----------NRNLFCGDTRGTV 199 (1118)
T ss_pred CCcceeecchhhheeeeec---------------ccceeeeeeeccCCceEEEEec-----------CcEEEeecccceE
Confidence 4556777777776666332 2333344443333346666553 3899999999999
Q ss_pred EEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeC---------CCeEEEEECCCCcEEEEecCCCCCcEE
Q 000743 421 RIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE---------DFSVALASLETLRVERMFPGHPNYPAK 491 (1313)
Q Consensus 421 rVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~---------DgtV~LWDL~t~~~l~~l~gH~~~V~s 491 (1313)
.+-|.++.+.+++|..|++.|..+..+ |+.++|+|. |.-|++||+|..+.+..+.-|.++ .-
T Consensus 200 ~LrD~~s~~~iht~~aHs~siSDfDv~--------GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~f 270 (1118)
T KOG1275|consen 200 FLRDPNSFETIHTFDAHSGSISDFDVQ--------GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QF 270 (1118)
T ss_pred EeecCCcCceeeeeeccccceeeeecc--------CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hh
Confidence 999999999999999999999887765 578888874 677999999998887766655433 45
Q ss_pred EEEcCCCC-EEEEEecCCCCCCCCCCEEEEEEC
Q 000743 492 VVWDCPRG-YIACLCRDHSRTSDAVDVLFIWDV 523 (1313)
Q Consensus 492 VafsPdg~-~Latgs~DlsGssD~DgtIrVWDl 523 (1313)
+.|+|.-. .+++.+.. |...+-|.
T Consensus 271 lrf~Psl~t~~~V~S~s--------Gq~q~vd~ 295 (1118)
T KOG1275|consen 271 LRFHPSLTTRLAVTSQS--------GQFQFVDT 295 (1118)
T ss_pred hhhcccccceEEEEecc--------cceeeccc
Confidence 77888543 44444433 77777773
No 298
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=95.78 E-value=0.41 Score=57.42 Aligned_cols=132 Identities=14% Similarity=0.187 Sum_probs=95.2
Q ss_pred CEEEEEEcCC-cEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEE
Q 000743 343 YAIVYGFFSG-EIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIR 421 (1313)
Q Consensus 343 ~~LvsGs~DG-sI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIr 421 (1313)
.+.+.|..|| .+-| ++ ..++ ..+.+.+.-+.|.++..+ +|| ..++.+..-..+-
T Consensus 372 e~~vigt~dgD~l~i--yd-------------~~~~-e~kr~e~~lg~I~av~vs-----~dG----K~~vvaNdr~el~ 426 (668)
T COG4946 372 EGDVIGTNDGDKLGI--YD-------------KDGG-EVKRIEKDLGNIEAVKVS-----PDG----KKVVVANDRFELW 426 (668)
T ss_pred cceEEeccCCceEEE--Ee-------------cCCc-eEEEeeCCccceEEEEEc-----CCC----cEEEEEcCceEEE
Confidence 3677777777 5555 33 2233 345666777889999988 567 8888888888999
Q ss_pred EEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCC----CeEEEEECCCCcEEEEecCCCCCcEEEEEcCC
Q 000743 422 IWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGED----FSVALASLETLRVERMFPGHPNYPAKVVWDCP 497 (1313)
Q Consensus 422 VWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~D----gtV~LWDL~t~~~l~~l~gH~~~V~sVafsPd 497 (1313)
+.|+.+|+....=+...+-|+...|||+ ++.|+-+=-+ ..|+++|+..++....- ...+.=.+-+|+|+
T Consensus 427 vididngnv~~idkS~~~lItdf~~~~n------sr~iAYafP~gy~tq~Iklydm~~~Kiy~vT-T~ta~DfsPaFD~d 499 (668)
T COG4946 427 VIDIDNGNVRLIDKSEYGLITDFDWHPN------SRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT-TPTAYDFSPAFDPD 499 (668)
T ss_pred EEEecCCCeeEecccccceeEEEEEcCC------ceeEEEecCcceeeeeEEEEecCCCeEEEec-CCcccccCcccCCC
Confidence 9999999876655666778999999999 5777766555 46899999877654332 22233346789999
Q ss_pred CCEEEEEec
Q 000743 498 RGYIACLCR 506 (1313)
Q Consensus 498 g~~Latgs~ 506 (1313)
++||.-.+.
T Consensus 500 ~ryLYfLs~ 508 (668)
T COG4946 500 GRYLYFLSA 508 (668)
T ss_pred CcEEEEEec
Confidence 998876443
No 299
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.77 E-value=0.32 Score=53.47 Aligned_cols=113 Identities=12% Similarity=-0.026 Sum_probs=78.2
Q ss_pred cEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCC-
Q 000743 409 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMF-PGHP- 486 (1313)
Q Consensus 409 ~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l-~gH~- 486 (1313)
..++.++.++.+..||..+|+.+.++.. .+++....... +..++.++.|+.+..+|.++|+.+... ....
T Consensus 37 ~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~-------~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~ 108 (238)
T PF13360_consen 37 GRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVVD-------GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSP 108 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEEE-------TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSC
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeeec-------ccccccccceeeeEecccCCcceeeeecccccc
Confidence 5778889999999999999999888774 22211111111 356677778889999999999999884 3321
Q ss_pred -C-CcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCC
Q 000743 487 -N-YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTAS 537 (1313)
Q Consensus 487 -~-~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a 537 (1313)
. ..........++.+++++.+ +.|+.+|+++|+.+.....+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~--------g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 109 PAGVRSSSSPAVDGDRLYVGTSS--------GKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp TCSTB--SEEEEETTEEEEEETC--------SEEEEEETTTTEEEEEEESSTT
T ss_pred ccccccccCceEecCEEEEEecc--------CcEEEEecCCCcEEEEeecCCC
Confidence 1 11222233337777776655 9999999999999988877553
No 300
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=95.63 E-value=0.4 Score=57.18 Aligned_cols=104 Identities=11% Similarity=-0.016 Sum_probs=79.5
Q ss_pred CcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEe---------CCCeEEEEECCCCcEEEEecCCCC-
Q 000743 418 CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG---------EDFSVALASLETLRVERMFPGHPN- 487 (1313)
Q Consensus 418 gtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS---------~DgtV~LWDL~t~~~l~~l~gH~~- 487 (1313)
++|.+.|..+++.+..+..-..+- .+ ++|++ ....++.+ .+..|.+||+.+++.+..+.-...
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg-----~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p 99 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDG-----SFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGP 99 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCC-----CEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCc
Confidence 899999999999988887432222 24 89994 23455555 688999999999999988864221
Q ss_pred ------CcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeC
Q 000743 488 ------YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 534 (1313)
Q Consensus 488 ------~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~G 534 (1313)
....++++|+|++|++...+ .+..|.+.|+.+++.+.++.-
T Consensus 100 ~~~~~~~~~~~~ls~dgk~l~V~n~~------p~~~V~VvD~~~~kvv~ei~v 146 (352)
T TIGR02658 100 RFLVGTYPWMTSLTPDNKTLLFYQFS------PSPAVGVVDLEGKAFVRMMDV 146 (352)
T ss_pred hhhccCccceEEECCCCCEEEEecCC------CCCEEEEEECCCCcEEEEEeC
Confidence 23489999999999986543 348999999999999988764
No 301
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=95.59 E-value=2.5 Score=49.76 Aligned_cols=124 Identities=12% Similarity=0.169 Sum_probs=84.2
Q ss_pred EEEEEeccccCCCCCccCcEEEEEeC-CCcEEEEECCC-CceEE--EEeccCCC----------EEEEEECCCCCCCCCC
Q 000743 391 LCLAAHRMVGTAKGWSFNEVLVSGSM-DCSIRIWDLGS-GNLIT--VMHHHVAP----------VRQIILSPPQTEHPWS 456 (1313)
Q Consensus 391 ~sLafsP~~s~pDGr~~~~~LaSGS~-DgtIrVWDl~t-g~~l~--t~~gH~~~----------V~sV~fsPd~~~~~~g 456 (1313)
+.++++ ++| +++++++. -+.|.++-+.. |.+.. ....|.+. +....+.|+ +
T Consensus 92 ~yvsvd-----~~g----~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~------~ 156 (346)
T COG2706 92 CYVSVD-----EDG----RFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPD------G 156 (346)
T ss_pred eEEEEC-----CCC----CEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCC------C
Confidence 566666 455 78888874 57899999864 44322 22236665 888999999 6
Q ss_pred CEEEEEeC-CCeEEEEECCCCcEEEEec---CCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCC-cEEEE
Q 000743 457 DCFLSVGE-DFSVALASLETLRVERMFP---GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG-ARERV 531 (1313)
Q Consensus 457 ~~LaSgS~-DgtV~LWDL~t~~~l~~l~---gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG-~lv~~ 531 (1313)
+++++..- --.|.+|++..++....-+ ......+.+.|||++++..+.++= +++|-+|+.... ..+..
T Consensus 157 ~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL-------~stV~v~~y~~~~g~~~~ 229 (346)
T COG2706 157 RYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNEL-------NSTVDVLEYNPAVGKFEE 229 (346)
T ss_pred CEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEecc-------CCEEEEEEEcCCCceEEE
Confidence 77777652 2368899999776432111 223467899999999999888774 389999998873 34455
Q ss_pred EeCCC
Q 000743 532 LRGTA 536 (1313)
Q Consensus 532 L~GH~ 536 (1313)
++-+.
T Consensus 230 lQ~i~ 234 (346)
T COG2706 230 LQTID 234 (346)
T ss_pred eeeec
Confidence 55443
No 302
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=95.55 E-value=0.036 Score=63.51 Aligned_cols=109 Identities=14% Similarity=0.031 Sum_probs=82.2
Q ss_pred CCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 000743 402 AKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERM 481 (1313)
Q Consensus 402 pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~ 481 (1313)
|+| +++++++.- .+-|-|.++-+..+.|.. -..|.-+.|..+. ...++....|+.|.+|++...+--..
T Consensus 18 p~g----~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads-----~~ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 18 PCG----NYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADS-----CHILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred CCC----Ceeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccc-----eeeeeeeeccceEEEEEeecceeEEE
Confidence 567 999999866 788889888776555542 3456778888874 25677778899999999987766666
Q ss_pred ecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcE
Q 000743 482 FPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 528 (1313)
Q Consensus 482 l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~l 528 (1313)
+..-...+..++|+|+|+.|+..++- |-.|.||.+.|...
T Consensus 87 Ideg~agls~~~WSPdgrhiL~tseF-------~lriTVWSL~t~~~ 126 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDGRHILLTSEF-------DLRITVWSLNTQKG 126 (447)
T ss_pred eccCCCcceeeeECCCcceEeeeecc-------eeEEEEEEecccee
Confidence 76666788999999999766654332 38999999988553
No 303
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=95.50 E-value=3 Score=46.72 Aligned_cols=132 Identities=18% Similarity=0.180 Sum_probs=86.8
Q ss_pred CccEEEEEEeccccCCCCCccCcEEEEEeCC--------CcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCC-
Q 000743 387 TGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD--------CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSD- 457 (1313)
Q Consensus 387 ~~~V~sLafsP~~s~pDGr~~~~~LaSGS~D--------gtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~- 457 (1313)
....+++++. ++| ++.++-... +.|..++.. ++...... .-...+.++|+|+ ++
T Consensus 85 ~~~~ND~~vd-----~~G----~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~d------g~~ 147 (246)
T PF08450_consen 85 FNRPNDVAVD-----PDG----NLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPD------GKT 147 (246)
T ss_dssp TEEEEEEEE------TTS-----EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETT------SSE
T ss_pred cCCCceEEEc-----CCC----CEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCc------chh
Confidence 4668899987 566 677776644 457777766 55433333 4556899999999 55
Q ss_pred EEEEEeCCCeEEEEECCCCc-------EEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEE
Q 000743 458 CFLSVGEDFSVALASLETLR-------VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 530 (1313)
Q Consensus 458 ~LaSgS~DgtV~LWDL~t~~-------~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~ 530 (1313)
++++-+..+.|..+++.... ....+..-.+.+-.++++.+|+..++.... +.|.++|.+ |+++.
T Consensus 148 lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~--------~~I~~~~p~-G~~~~ 218 (246)
T PF08450_consen 148 LYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG--------GRIVVFDPD-GKLLR 218 (246)
T ss_dssp EEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT--------TEEEEEETT-SCEEE
T ss_pred eeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC--------CEEEEECCC-ccEEE
Confidence 45677888899999985322 122233322347799999999877654433 899999987 99888
Q ss_pred EEeCCCCceeEEee
Q 000743 531 VLRGTASHSMFDHF 544 (1313)
Q Consensus 531 ~L~GH~a~Vi~~~~ 544 (1313)
.+.-....++.+.|
T Consensus 219 ~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 219 EIELPVPRPTNCAF 232 (246)
T ss_dssp EEE-SSSSEEEEEE
T ss_pred EEcCCCCCEEEEEE
Confidence 88766556665545
No 304
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.17 E-value=0.073 Score=65.67 Aligned_cols=78 Identities=17% Similarity=0.209 Sum_probs=68.1
Q ss_pred CCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcE-EEEEcCCCCEEEEEecCCCCCCCCCCE
Q 000743 439 APVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPA-KVVWDCPRGYIACLCRDHSRTSDAVDV 517 (1313)
Q Consensus 439 ~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~-sVafsPdg~~Latgs~DlsGssD~Dgt 517 (1313)
-.|..+.|+|. -+.||.+..+|.+.+..+. .+-+.+++-|...++ +++|.|||+.|++|-.| |+
T Consensus 21 ~~i~~~ewnP~------~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kd--------G~ 85 (665)
T KOG4640|consen 21 INIKRIEWNPK------MDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKD--------GT 85 (665)
T ss_pred cceEEEEEcCc------cchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecC--------Ce
Confidence 45788999998 5899999999999999887 777888887777777 99999999999998887 99
Q ss_pred EEEEECCCCcEEEE
Q 000743 518 LFIWDVKTGARERV 531 (1313)
Q Consensus 518 IrVWDlrTG~lv~~ 531 (1313)
|++-|+++|..+..
T Consensus 86 I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 86 IRLHDVEKGGRLVS 99 (665)
T ss_pred EEEEEccCCCceec
Confidence 99999999876544
No 305
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=95.17 E-value=3.1 Score=49.38 Aligned_cols=118 Identities=14% Similarity=0.173 Sum_probs=77.6
Q ss_pred ccEEEEEEeccccCCCCCccCcEEEEEe-CCCcEEEEECCC-CceEEE---Ee----------ccCCCEEEEEECCCCCC
Q 000743 388 GAVLCLAAHRMVGTAKGWSFNEVLVSGS-MDCSIRIWDLGS-GNLITV---MH----------HHVAPVRQIILSPPQTE 452 (1313)
Q Consensus 388 ~~V~sLafsP~~s~pDGr~~~~~LaSGS-~DgtIrVWDl~t-g~~l~t---~~----------gH~~~V~sV~fsPd~~~ 452 (1313)
.....++++ +|| ++|+.+. .+++|.++++.. |..... +. .......++.|+|+
T Consensus 87 ~~p~~i~~~-----~~g----~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pd--- 154 (345)
T PF10282_consen 87 SSPCHIAVD-----PDG----RFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPD--- 154 (345)
T ss_dssp SCEEEEEEC-----TTS----SEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TT---
T ss_pred CCcEEEEEe-----cCC----CEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCC---
Confidence 345567777 455 6777666 689999999986 443322 21 11245789999999
Q ss_pred CCCCCEEEEE-eCCCeEEEEECCCCc--E--EEEec-CCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECC--
Q 000743 453 HPWSDCFLSV-GEDFSVALASLETLR--V--ERMFP-GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK-- 524 (1313)
Q Consensus 453 ~~~g~~LaSg-S~DgtV~LWDL~t~~--~--l~~l~-gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlr-- 524 (1313)
+++++.. -....|.+|++.... . ...+. .....++.+.|+|+++++++.++. +++|.++++.
T Consensus 155 ---g~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~-------s~~v~v~~~~~~ 224 (345)
T PF10282_consen 155 ---GRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNEL-------SNTVSVFDYDPS 224 (345)
T ss_dssp ---SSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETT-------TTEEEEEEEETT
T ss_pred ---CCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCC-------CCcEEEEeeccc
Confidence 5655544 345589999997654 2 22232 223468899999999999988765 3899999988
Q ss_pred CCc
Q 000743 525 TGA 527 (1313)
Q Consensus 525 TG~ 527 (1313)
+|.
T Consensus 225 ~g~ 227 (345)
T PF10282_consen 225 DGS 227 (345)
T ss_dssp TTE
T ss_pred CCc
Confidence 553
No 306
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=95.02 E-value=0.048 Score=62.05 Aligned_cols=129 Identities=16% Similarity=0.167 Sum_probs=88.7
Q ss_pred ecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCc---eEEEEecc-----CCCEEEEEECCCCCCCCC
Q 000743 384 LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN---LITVMHHH-----VAPVRQIILSPPQTEHPW 455 (1313)
Q Consensus 384 ~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~---~l~t~~gH-----~~~V~sV~fsPd~~~~~~ 455 (1313)
..|..-++++.++. +.+.++|+ +|-.|.+|++.-.. -+.-++.| +.-|++..|+|..+
T Consensus 169 NaH~yhiNSiS~Ns---------D~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~c---- 234 (460)
T COG5170 169 NAHPYHINSISFNS---------DKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMC---- 234 (460)
T ss_pred ccceeEeeeeeecC---------chheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHc----
Confidence 56888899999972 33666664 67889999987432 23333444 34588999999864
Q ss_pred CCEEEEEeCCCeEEEEECCCCcE------EE--Ee--------cCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEE
Q 000743 456 SDCFLSVGEDFSVALASLETLRV------ER--MF--------PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLF 519 (1313)
Q Consensus 456 g~~LaSgS~DgtV~LWDL~t~~~------l~--~l--------~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIr 519 (1313)
..|.-.+..|.|++-|+|.... +. ++ .+-...|..+.|+++|+|+++-.. -+|+
T Consensus 235 -n~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy---------ltvk 304 (460)
T COG5170 235 -NVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY---------LTVK 304 (460)
T ss_pred -ceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc---------ceEE
Confidence 6777778889999999984321 11 11 122235788999999999986322 6999
Q ss_pred EEECCC-CcEEEEEeCCC
Q 000743 520 IWDVKT-GARERVLRGTA 536 (1313)
Q Consensus 520 VWDlrT-G~lv~~L~GH~ 536 (1313)
|||++. ..++.++.-|.
T Consensus 305 iwDvnm~k~pikTi~~h~ 322 (460)
T COG5170 305 IWDVNMAKNPIKTIPMHC 322 (460)
T ss_pred EEecccccCCceeechHH
Confidence 999986 45677765554
No 307
>PRK04043 tolB translocation protein TolB; Provisional
Probab=94.92 E-value=1.9 Score=52.92 Aligned_cols=126 Identities=14% Similarity=0.158 Sum_probs=76.6
Q ss_pred CCccEEEEEEeccccCCCCCccCcEEEEEeCC--CcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEe
Q 000743 386 HTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD--CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG 463 (1313)
Q Consensus 386 H~~~V~sLafsP~~s~pDGr~~~~~LaSGS~D--gtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS 463 (1313)
..+.+....|+ ||| ..++++.+.+ ..|.++|+.+++. ..+..+.+......|+|+ |+.|+-.+
T Consensus 231 ~~g~~~~~~~S-----PDG---~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPD------G~~I~F~S 295 (419)
T PRK04043 231 SQGMLVVSDVS-----KDG---SKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVED------DKRIVFVS 295 (419)
T ss_pred CCCcEEeeEEC-----CCC---CEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCC------CCEEEEEE
Confidence 44556667788 567 3455555544 4677778887764 445444443445679999 56554444
Q ss_pred -CCC--eEEEEECCCCcEEEEec-CCCCCcEEEEEcCCCCEEEEEecCCCCCCC---CCCEEEEEECCCCcEEEEEe
Q 000743 464 -EDF--SVALASLETLRVERMFP-GHPNYPAKVVWDCPRGYIACLCRDHSRTSD---AVDVLFIWDVKTGARERVLR 533 (1313)
Q Consensus 464 -~Dg--tV~LWDL~t~~~l~~l~-gH~~~V~sVafsPdg~~Latgs~DlsGssD---~DgtIrVWDlrTG~lv~~L~ 533 (1313)
..+ .|.++|+.+++..+... +. . ...|+|+|++|+..+.. ...+ ....|++.|+.+|+. +.++
T Consensus 296 dr~g~~~Iy~~dl~~g~~~rlt~~g~--~--~~~~SPDG~~Ia~~~~~--~~~~~~~~~~~I~v~d~~~g~~-~~LT 365 (419)
T PRK04043 296 DRLGYPNIFMKKLNSGSVEQVVFHGK--N--NSSVSTYKNYIVYSSRE--TNNEFGKNTFNLYLISTNSDYI-RRLT 365 (419)
T ss_pred CCCCCceEEEEECCCCCeEeCccCCC--c--CceECCCCCEEEEEEcC--CCcccCCCCcEEEEEECCCCCe-EECC
Confidence 233 57788888777644332 22 1 24899999999876654 1111 014788889988864 4444
No 308
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.66 E-value=0.062 Score=63.15 Aligned_cols=86 Identities=14% Similarity=0.081 Sum_probs=74.4
Q ss_pred eEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCC
Q 000743 378 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSD 457 (1313)
Q Consensus 378 ~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~ 457 (1313)
+..+.+.+|...|.+++|+|. ...++..++.+.+|+|.|+++..+...+..| ..+++++|.-+. .+
T Consensus 184 kssq~lp~~g~~IrdlafSp~--------~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde-----~h 249 (463)
T KOG1645|consen 184 KSSQILPGEGSFIRDLAFSPF--------NEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDE-----RH 249 (463)
T ss_pred chhhcccccchhhhhhccCcc--------ccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCC-----cc
Confidence 445678899999999999972 2238999999999999999999999999877 889999999885 57
Q ss_pred EEEEEeCCCeEEEEECCCCc
Q 000743 458 CFLSVGEDFSVALASLETLR 477 (1313)
Q Consensus 458 ~LaSgS~DgtV~LWDL~t~~ 477 (1313)
+|..|-..|.|.+||++..+
T Consensus 250 ~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 250 VIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred eeEEeccCceEEEEEccCCC
Confidence 89999999999999998653
No 309
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.65 E-value=1.5 Score=56.21 Aligned_cols=172 Identities=14% Similarity=0.131 Sum_probs=108.6
Q ss_pred EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCcc-EEEEEEeccccCCCCCccCcEEEEEeCCCc---
Q 000743 344 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGA-VLCLAAHRMVGTAKGWSFNEVLVSGSMDCS--- 419 (1313)
Q Consensus 344 ~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~-V~sLafsP~~s~pDGr~~~~~LaSGS~Dgt--- 419 (1313)
.++.|+.+|.|.+ .+ .+-+..+.++.|... |..+ |. .+ ...+|+|-+.|..
T Consensus 37 ~vvigt~~G~V~~--Ln--------------~s~~~~~~fqa~~~siv~~L-~~-----~~---~~~~L~sv~Ed~~~np 91 (933)
T KOG2114|consen 37 SVVIGTADGRVVI--LN--------------SSFQLIRGFQAYEQSIVQFL-YI-----LN---KQNFLFSVGEDEQGNP 91 (933)
T ss_pred eEEEeeccccEEE--ec--------------ccceeeehheecchhhhhHh-hc-----cc---CceEEEEEeecCCCCc
Confidence 5999999999988 43 111334666777666 3333 33 11 2468888887764
Q ss_pred --EEEEECCC------CceE--EEEecc-----CCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECC---CC--cEE
Q 000743 420 --IRIWDLGS------GNLI--TVMHHH-----VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE---TL--RVE 479 (1313)
Q Consensus 420 --IrVWDl~t------g~~l--~t~~gH-----~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~---t~--~~l 479 (1313)
+++||++. ..++ +.+..| ..++.+++++-+ -.++++|=.||.|..+.-+ .. +..
T Consensus 92 ~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~------l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~ 165 (933)
T KOG2114|consen 92 VLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSED------LKTIVCGFTNGLVICYKGDILRDRGSRQD 165 (933)
T ss_pred eEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcc------ccEEEEEecCcEEEEEcCcchhcccccee
Confidence 89999872 3344 233333 456888888887 5899999999999988532 11 111
Q ss_pred EEecCCCCCcEEEEEcCCCCE-EEEEecCCCCCCCCCCEEEEEECCCCc-EEEEEeCCCCceeEEeeecccccceeecc
Q 000743 480 RMFPGHPNYPAKVVWDCPRGY-IACLCRDHSRTSDAVDVLFIWDVKTGA-RERVLRGTASHSMFDHFCKGISMNSISGS 556 (1313)
Q Consensus 480 ~~l~gH~~~V~sVafsPdg~~-Latgs~DlsGssD~DgtIrVWDlrTG~-lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS 556 (1313)
...+ -..+|+.+.+..++.- +.++.. ..|.+|.+.... ...++..|.....+..+|+.-..-++.|+
T Consensus 166 ~~~~-~~~pITgL~~~~d~~s~lFv~Tt---------~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~ 234 (933)
T KOG2114|consen 166 YSHR-GKEPITGLALRSDGKSVLFVATT---------EQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS 234 (933)
T ss_pred eecc-CCCCceeeEEecCCceeEEEEec---------ceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC
Confidence 1222 2358999999988876 333222 579999987433 35557777777766556654332344444
No 310
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=94.56 E-value=14 Score=44.48 Aligned_cols=106 Identities=12% Similarity=0.019 Sum_probs=70.5
Q ss_pred cEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCC
Q 000743 409 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNY 488 (1313)
Q Consensus 409 ~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~ 488 (1313)
..++.++.|+.+...|..+|+.+-+.. .+....+.. . +..++.++.|+.+..+|.++++.+.....-...
T Consensus 257 ~~vy~~~~~g~l~ald~~tG~~~W~~~--~~~~~~~~~--~------~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~ 326 (394)
T PRK11138 257 GVVYALAYNGNLVALDLRSGQIVWKRE--YGSVNDFAV--D------GGRIYLVDQNDRVYALDTRGGVELWSQSDLLHR 326 (394)
T ss_pred CEEEEEEcCCeEEEEECCCCCEEEeec--CCCccCcEE--E------CCEEEEEcCCCeEEEEECCCCcEEEcccccCCC
Confidence 467777889999999999998765543 111111222 1 456777888999999999999877654321111
Q ss_pred -cEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeC
Q 000743 489 -PAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 534 (1313)
Q Consensus 489 -V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~G 534 (1313)
...... .+.+|+.+..| |.++..|..+|+.+....-
T Consensus 327 ~~~sp~v--~~g~l~v~~~~--------G~l~~ld~~tG~~~~~~~~ 363 (394)
T PRK11138 327 LLTAPVL--YNGYLVVGDSE--------GYLHWINREDGRFVAQQKV 363 (394)
T ss_pred cccCCEE--ECCEEEEEeCC--------CEEEEEECCCCCEEEEEEc
Confidence 111122 25677776655 9999999999998876643
No 311
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=94.25 E-value=15 Score=43.48 Aligned_cols=101 Identities=17% Similarity=0.186 Sum_probs=60.8
Q ss_pred EEEEEEeccccCCCCCccCcEEEEEeCC-CcEEEEECCCCceEEEEe---ccCCCEEEEEECCCCCCCCCCCEEEEEe-C
Q 000743 390 VLCLAAHRMVGTAKGWSFNEVLVSGSMD-CSIRIWDLGSGNLITVMH---HHVAPVRQIILSPPQTEHPWSDCFLSVG-E 464 (1313)
Q Consensus 390 V~sLafsP~~s~pDGr~~~~~LaSGS~D-gtIrVWDl~tg~~l~t~~---gH~~~V~sV~fsPd~~~~~~g~~LaSgS-~ 464 (1313)
+.+..+. ||| ++|++.... -.|.++|+..|+....-. .-...-+-|.|||+ +++..... -
T Consensus 147 ~H~a~~t-----P~~----~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn------~k~aY~v~EL 211 (346)
T COG2706 147 VHSANFT-----PDG----RYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPN------GKYAYLVNEL 211 (346)
T ss_pred cceeeeC-----CCC----CEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCC------CcEEEEEecc
Confidence 5566666 566 788777632 268999999776432211 23456788999999 56655555 4
Q ss_pred CCeEEEEECCCC--c--EEEEecC----C--CCCcEEEEEcCCCCEEEEEe
Q 000743 465 DFSVALASLETL--R--VERMFPG----H--PNYPAKVVWDCPRGYIACLC 505 (1313)
Q Consensus 465 DgtV~LWDL~t~--~--~l~~l~g----H--~~~V~sVafsPdg~~Latgs 505 (1313)
+++|.+|..... + .++.+.. - ......|..+|+|+||.+.-
T Consensus 212 ~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasN 262 (346)
T COG2706 212 NSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASN 262 (346)
T ss_pred CCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEec
Confidence 888999987763 1 2222110 0 11344666677777766543
No 312
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=94.25 E-value=2 Score=49.19 Aligned_cols=171 Identities=15% Similarity=0.170 Sum_probs=96.7
Q ss_pred ccccCC--EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEec-CCccEEEEEEeccccCCCCCccCcEEEEE
Q 000743 338 SFYAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLG-HTGAVLCLAAHRMVGTAKGWSFNEVLVSG 414 (1313)
Q Consensus 338 ~~fsP~--~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~G-H~~~V~sLafsP~~s~pDGr~~~~~LaSG 414 (1313)
..|+|+ .++++...|+|++ ||+.... ...+.. ...+.+ -..+|.++.|-+...++. -...|+.-
T Consensus 49 l~WSpD~tlLa~a~S~G~i~v--fdl~g~~-----lf~I~p---~~~~~~d~~~Aiagl~Fl~~~~s~~---ws~ELlvi 115 (282)
T PF15492_consen 49 LAWSPDCTLLAYAESTGTIRV--FDLMGSE-----LFVIPP---AMSFPGDLSDAIAGLIFLEYKKSAQ---WSYELLVI 115 (282)
T ss_pred EEECCCCcEEEEEcCCCeEEE--Eecccce-----eEEcCc---ccccCCccccceeeeEeeccccccc---cceeEEEE
Confidence 456666 4888999999999 6654331 001110 001111 135677777754111000 01245556
Q ss_pred eCCCcEEEEECCC-----CceEEEEec---cCCCEEEEEECCCCCCCCCCCEEE-EEeCCCe----------EEEEECCC
Q 000743 415 SMDCSIRIWDLGS-----GNLITVMHH---HVAPVRQIILSPPQTEHPWSDCFL-SVGEDFS----------VALASLET 475 (1313)
Q Consensus 415 S~DgtIrVWDl~t-----g~~l~t~~g---H~~~V~sV~fsPd~~~~~~g~~La-SgS~Dgt----------V~LWDL~t 475 (1313)
..+|.++=+-+.. .+..++|.- +...|+++.++|.+ ++|+ .|+.... +.-|.+-+
T Consensus 116 ~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h------~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~ 189 (282)
T PF15492_consen 116 NYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH------RLLLVGGCEQNQDGMSKASSCGLTAWRILS 189 (282)
T ss_pred eccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC------CEEEEeccCCCCCccccccccCceEEEEcC
Confidence 6777776665432 233444432 46789999999984 3333 3333221 34454432
Q ss_pred CcE--------------------EE------Eec---CCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCC
Q 000743 476 LRV--------------------ER------MFP---GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 526 (1313)
Q Consensus 476 ~~~--------------------l~------~l~---gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG 526 (1313)
+.+ .. .+. .....|..+..+|||..|++.+.+ |+|.+|++-+-
T Consensus 190 ~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~s--------G~lsLW~iPsL 261 (282)
T PF15492_consen 190 DSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFS--------GSLSLWEIPSL 261 (282)
T ss_pred CCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcC--------CeEEEEecCcc
Confidence 211 00 111 123468899999999999998887 99999999886
Q ss_pred cEEEEEeCC
Q 000743 527 ARERVLRGT 535 (1313)
Q Consensus 527 ~lv~~L~GH 535 (1313)
.+.+...-+
T Consensus 262 ~~~~~W~~~ 270 (282)
T PF15492_consen 262 RLQRSWKQD 270 (282)
T ss_pred hhhcccchh
Confidence 666655433
No 313
>PRK04043 tolB translocation protein TolB; Provisional
Probab=94.25 E-value=4.8 Score=49.41 Aligned_cols=123 Identities=11% Similarity=0.076 Sum_probs=78.9
Q ss_pred cEEEEEEeccccCCCCCccCcEEEEEeC---CCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCC-EEEEEeC
Q 000743 389 AVLCLAAHRMVGTAKGWSFNEVLVSGSM---DCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSD-CFLSVGE 464 (1313)
Q Consensus 389 ~V~sLafsP~~s~pDGr~~~~~LaSGS~---DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~-~LaSgS~ 464 (1313)
....-.|+ ||| +..++-.+. +..|.++|+.+++...... ..+.+....|+|| |+ .+++.+.
T Consensus 189 ~~~~p~wS-----pDG---~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPD------G~~la~~~~~ 253 (419)
T PRK04043 189 LNIFPKWA-----NKE---QTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKD------GSKLLLTMAP 253 (419)
T ss_pred CeEeEEEC-----CCC---CcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCC------CCEEEEEEcc
Confidence 67778888 566 223443333 3579999999887644433 4556677889999 54 4445544
Q ss_pred C--CeEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEE
Q 000743 465 D--FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL 532 (1313)
Q Consensus 465 D--gtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L 532 (1313)
+ ..|.++|+.+++. ..+..+........|+|||+.|+-.+.. .+...|++.|+.+|+..+..
T Consensus 254 ~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr-----~g~~~Iy~~dl~~g~~~rlt 317 (419)
T PRK04043 254 KGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDR-----LGYPNIFMKKLNSGSVEQVV 317 (419)
T ss_pred CCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECC-----CCCceEEEEECCCCCeEeCc
Confidence 4 4677788877764 3444443333456899999988765532 11147999999988775544
No 314
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.19 E-value=0.17 Score=62.93 Aligned_cols=105 Identities=12% Similarity=0.159 Sum_probs=80.8
Q ss_pred ccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCc---------------eEEEEeccCCCEEEEEECCCCCC
Q 000743 388 GAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN---------------LITVMHHHVAPVRQIILSPPQTE 452 (1313)
Q Consensus 388 ~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~---------------~l~t~~gH~~~V~sV~fsPd~~~ 452 (1313)
....|+.|+- ...+++.|+.||.+++-.+.+.. .-+++.||.+.|.-+.|+..
T Consensus 15 vkL~c~~WNk---------e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~--- 82 (1189)
T KOG2041|consen 15 VKLHCAEWNK---------ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNEN--- 82 (1189)
T ss_pred ceEEEEEEcc---------cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccc---
Confidence 4577999973 34799999999999999887532 23468899999999999987
Q ss_pred CCCCCEEEEEeCCCeEEEEECCCCcEE-EEec-CCCCCcEEEEEcCCCCEEEEEecC
Q 000743 453 HPWSDCFLSVGEDFSVALASLETLRVE-RMFP-GHPNYPAKVVWDCPRGYIACLCRD 507 (1313)
Q Consensus 453 ~~~g~~LaSgS~DgtV~LWDL~t~~~l-~~l~-gH~~~V~sVafsPdg~~Latgs~D 507 (1313)
.+.+-|...+|-|.+|-+-.+.=. .++. ...+-|.+++|+.+|..|...-+|
T Consensus 83 ---~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeD 136 (1189)
T KOG2041|consen 83 ---NQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYED 136 (1189)
T ss_pred ---cccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEcc
Confidence 467888888999999998766422 2222 233457799999999988877776
No 315
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.97 E-value=5.4 Score=51.53 Aligned_cols=118 Identities=14% Similarity=0.151 Sum_probs=75.2
Q ss_pred EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEE
Q 000743 344 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 423 (1313)
Q Consensus 344 ~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVW 423 (1313)
.+++|..+|.|..+.=|.... .+........-.++|+.+++. .|| ...+.. ..-..|.++
T Consensus 139 ~Iv~Gf~nG~V~~~~GDi~RD-----------rgsr~~~~~~~~~pITgL~~~-----~d~---~s~lFv-~Tt~~V~~y 198 (933)
T KOG2114|consen 139 TIVCGFTNGLVICYKGDILRD-----------RGSRQDYSHRGKEPITGLALR-----SDG---KSVLFV-ATTEQVMLY 198 (933)
T ss_pred EEEEEecCcEEEEEcCcchhc-----------cccceeeeccCCCCceeeEEe-----cCC---ceeEEE-EecceeEEE
Confidence 499999999999965554322 111122222235789999996 344 121222 234578999
Q ss_pred ECCCCce-EEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCC
Q 000743 424 DLGSGNL-ITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFP-GHPNY 488 (1313)
Q Consensus 424 Dl~tg~~-l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~-gH~~~ 488 (1313)
.+....+ +.++..|..+++|..+++.. +++++++ +..+.+||......-..|. ||...
T Consensus 199 ~l~gr~p~~~~ld~~G~~lnCss~~~~t-----~qfIca~--~e~l~fY~sd~~~~cfaf~~g~kk~ 258 (933)
T KOG2114|consen 199 SLSGRTPSLKVLDNNGISLNCSSFSDGT-----YQFICAG--SEFLYFYDSDGRGPCFAFEVGEKKE 258 (933)
T ss_pred EecCCCcceeeeccCCccceeeecCCCC-----ccEEEec--CceEEEEcCCCcceeeeecCCCeEE
Confidence 9873333 44577788899999999873 2344443 4689999988766667776 77543
No 316
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=93.55 E-value=0.44 Score=58.22 Aligned_cols=109 Identities=19% Similarity=0.223 Sum_probs=82.8
Q ss_pred EEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeC------
Q 000743 391 LCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE------ 464 (1313)
Q Consensus 391 ~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~------ 464 (1313)
+-+.||| -| .+|+|--.-| |.+|--.+...+++|. |. .|.-+.|+|. .++|+|=|.
T Consensus 214 tyv~wSP-----~G----TYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~------EkYLVT~s~~p~~~~ 275 (698)
T KOG2314|consen 214 TYVRWSP-----KG----TYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPN------EKYLVTYSPEPIIVE 275 (698)
T ss_pred eeEEecC-----Cc----eEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCc------cceEEEecCCccccC
Confidence 4678985 45 8888876554 8899877777888886 65 4889999998 578888653
Q ss_pred -----CCeEEEEECCCCcEEEEecCCCC--CcE-EEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCC
Q 000743 465 -----DFSVALASLETLRVERMFPGHPN--YPA-KVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 526 (1313)
Q Consensus 465 -----DgtV~LWDL~t~~~l~~l~gH~~--~V~-sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG 526 (1313)
-..++|||+++|...+.|....+ .++ -+.|+.|++|++.-.. .+|.|++..+-
T Consensus 276 ~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~---------~sisIyEtpsf 336 (698)
T KOG2314|consen 276 EDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG---------NSISIYETPSF 336 (698)
T ss_pred cccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc---------ceEEEEecCce
Confidence 26799999999999888865322 233 6889999999997544 48999987653
No 317
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=93.27 E-value=0.91 Score=55.19 Aligned_cols=123 Identities=16% Similarity=0.145 Sum_probs=86.1
Q ss_pred EEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEE
Q 000743 382 YFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLS 461 (1313)
Q Consensus 382 ~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaS 461 (1313)
...+-.++|...+|.| ++ ..--+++|-.+.++-++|++.. .... .-...=+.+.|+|. +++++.
T Consensus 269 V~~~~~~pVhdf~W~p-----~S--~~F~vi~g~~pa~~s~~~lr~N-l~~~--~Pe~~rNT~~fsp~------~r~il~ 332 (561)
T COG5354 269 VEKDLKDPVHDFTWEP-----LS--SRFAVISGYMPASVSVFDLRGN-LRFY--FPEQKRNTIFFSPH------ERYILF 332 (561)
T ss_pred eeccccccceeeeecc-----cC--CceeEEecccccceeecccccc-eEEe--cCCcccccccccCc------ccEEEE
Confidence 3335678999999986 23 2234667779999999999865 3333 34455677889998 688999
Q ss_pred EeCC---CeEEEEECCCCcEE-EEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECC
Q 000743 462 VGED---FSVALASLETLRVE-RMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 524 (1313)
Q Consensus 462 gS~D---gtV~LWDL~t~~~l-~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlr 524 (1313)
++-| |.+-+||......+ ..+.+. ...-+.|+|++.|+.+.... ----.|..|.|||+.
T Consensus 333 agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ts--~k~~~Dn~i~l~~v~ 395 (561)
T COG5354 333 AGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTTS--EKLRVDNSIKLWDVY 395 (561)
T ss_pred ecCCccccceEEeccCCceEEEEEeecC--CceEeeccCCceEEEecCCC--cccccCcceEEEEec
Confidence 8877 56899998755443 366654 34567899999998874332 111235899999984
No 318
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.27 E-value=1.9 Score=55.10 Aligned_cols=154 Identities=15% Similarity=0.168 Sum_probs=98.4
Q ss_pred EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEE
Q 000743 344 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 423 (1313)
Q Consensus 344 ~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVW 423 (1313)
.+++++.||.|.|... . +.+...++. -..++.+++++|.++ +.....+++|+.-| +.+.
T Consensus 85 y~asCS~DGkv~I~sl--~-------------~~~~~~~~d-f~rpiksial~Pd~~----~~~sk~fv~GG~ag-lvL~ 143 (846)
T KOG2066|consen 85 YVASCSDDGKVVIGSL--F-------------TDDEITQYD-FKRPIKSIALHPDFS----RQQSKQFVSGGMAG-LVLS 143 (846)
T ss_pred eEEEecCCCcEEEeec--c-------------CCccceeEe-cCCcceeEEeccchh----hhhhhheeecCcce-EEEe
Confidence 5999999999999322 1 112222222 245789999998543 23457899999988 7666
Q ss_pred ECCCC-ceE-EEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC------CcEEEEEc
Q 000743 424 DLGSG-NLI-TVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN------YPAKVVWD 495 (1313)
Q Consensus 424 Dl~tg-~~l-~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~------~V~sVafs 495 (1313)
.-+-. ... ..+..-.|+|.++.|. |++|+=++++ -|++||+.+++.+..++.... ....+.|.
T Consensus 144 er~wlgnk~~v~l~~~eG~I~~i~W~--------g~lIAWand~-Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~ 214 (846)
T KOG2066|consen 144 ERNWLGNKDSVVLSEGEGPIHSIKWR--------GNLIAWANDD-GVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQ 214 (846)
T ss_pred hhhhhcCccceeeecCccceEEEEec--------CcEEEEecCC-CcEEEeccccceeeccCCCCCCCCcccCCCceEec
Confidence 53311 111 1344556899999997 4566666554 589999999888776654322 34578898
Q ss_pred CCCCEEEEEecCCCCCCCCCCEEEEEECCCCc--EEEEEeCCCC
Q 000743 496 CPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA--RERVLRGTAS 537 (1313)
Q Consensus 496 Pdg~~Latgs~DlsGssD~DgtIrVWDlrTG~--lv~~L~GH~a 537 (1313)
++.+.++ |-. .+|+|..++.+. ..+.+.+|..
T Consensus 215 ~~~~LVI-GW~---------d~v~i~~I~~~~s~~a~~~~~~~~ 248 (846)
T KOG2066|consen 215 DEDRLVI-GWG---------DSVKICSIKKRSSSEARSFRLPSL 248 (846)
T ss_pred CCCeEEE-ecC---------CeEEEEEEecccccccccccCCcc
Confidence 8776655 332 489999988432 2344455554
No 319
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=93.18 E-value=2.2 Score=51.14 Aligned_cols=109 Identities=14% Similarity=0.065 Sum_probs=75.8
Q ss_pred cEEEEEeCCCcEEEEECCC-----CceEEEEec-------cCCCEEEEEECCCCCCCCCCCEEEEEe----------CCC
Q 000743 409 EVLVSGSMDCSIRIWDLGS-----GNLITVMHH-------HVAPVRQIILSPPQTEHPWSDCFLSVG----------EDF 466 (1313)
Q Consensus 409 ~~LaSGS~DgtIrVWDl~t-----g~~l~t~~g-------H~~~V~sV~fsPd~~~~~~g~~LaSgS----------~Dg 466 (1313)
.++..... |+|.+-|+.. .+....+.. ..+.+.-++++|+ ++.+.... ..+
T Consensus 207 ~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~d------g~~lyV~~~~~~~~thk~~~~ 279 (352)
T TIGR02658 207 RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRA------RDRIYLLADQRAKWTHKTASR 279 (352)
T ss_pred cEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCC------CCEEEEEecCCccccccCCCC
Confidence 44444444 9999999543 233333221 2334556999998 45444322 225
Q ss_pred eEEEEECCCCcEEEEecCCCCCcEEEEEcCCCC-EEEEEecCCCCCCCCCCEEEEEECCCCcEEEEE
Q 000743 467 SVALASLETLRVERMFPGHPNYPAKVVWDCPRG-YIACLCRDHSRTSDAVDVLFIWDVKTGARERVL 532 (1313)
Q Consensus 467 tV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~-~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L 532 (1313)
.|.++|..+++.+..+.- ...+..++++||++ +|++.+.. ++.|.+.|..+++.++.+
T Consensus 280 ~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~-------s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 280 FLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTG-------DKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCC-------CCcEEEEECcCCeEEeee
Confidence 899999999999988763 23789999999999 88775532 278999999999999887
No 320
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.10 E-value=0.38 Score=59.66 Aligned_cols=77 Identities=9% Similarity=-0.013 Sum_probs=66.5
Q ss_pred cEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEE-EEEECCCCCCCCCCCEEEEEeCCCe
Q 000743 389 AVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVR-QIILSPPQTEHPWSDCFLSVGEDFS 467 (1313)
Q Consensus 389 ~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~-sV~fsPd~~~~~~g~~LaSgS~Dgt 467 (1313)
.|.-+.|+| ..+++|.+..+|.|.+..+. .+.+.++.-|...|+ +++|.|| |+.++-|=.||+
T Consensus 22 ~i~~~ewnP---------~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~D------GkllaVg~kdG~ 85 (665)
T KOG4640|consen 22 NIKRIEWNP---------KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPD------GKLLAVGFKDGT 85 (665)
T ss_pred ceEEEEEcC---------ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCC------CCEEEEEecCCe
Confidence 366778987 34799999999999999887 777888887888888 9999999 799999999999
Q ss_pred EEEEECCCCcEEEE
Q 000743 468 VALASLETLRVERM 481 (1313)
Q Consensus 468 V~LWDL~t~~~l~~ 481 (1313)
|++.|++++..+..
T Consensus 86 I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 86 IRLHDVEKGGRLVS 99 (665)
T ss_pred EEEEEccCCCceec
Confidence 99999998877655
No 321
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=92.73 E-value=1.7 Score=53.28 Aligned_cols=131 Identities=15% Similarity=0.108 Sum_probs=83.7
Q ss_pred CCccEEEEEEeccccCCCCCccCcEEEEEeC-----------CCcEEEEECCCCceEEEEeccCC--CEE-EEEECCCCC
Q 000743 386 HTGAVLCLAAHRMVGTAKGWSFNEVLVSGSM-----------DCSIRIWDLGSGNLITVMHHHVA--PVR-QIILSPPQT 451 (1313)
Q Consensus 386 H~~~V~sLafsP~~s~pDGr~~~~~LaSGS~-----------DgtIrVWDl~tg~~l~t~~gH~~--~V~-sV~fsPd~~ 451 (1313)
|.+ |.-+.||| ..++|+|-|. ...++|||+.+|...+.|..-.+ .++ -..|+-+
T Consensus 249 Hp~-Vq~idfSP---------~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~D-- 316 (698)
T KOG2314|consen 249 HPG-VQFIDFSP---------NEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHD-- 316 (698)
T ss_pred CCC-ceeeecCC---------ccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccC--
Confidence 544 77888886 3478888662 15799999999999988876322 232 3567777
Q ss_pred CCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEE
Q 000743 452 EHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV 531 (1313)
Q Consensus 452 ~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~ 531 (1313)
+.++|.-.. .+|.+|+..+...+-.-.-.-..|....|+|.++.|+--... ..+.-..+.+-.+.+++.+++
T Consensus 317 ----dKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe---~~~~parvtL~evPs~~~iRt 388 (698)
T KOG2314|consen 317 ----DKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPE---TNNIPARVTLMEVPSKREIRT 388 (698)
T ss_pred ----CceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccc---ccCCcceEEEEecCccceeee
Confidence 577776665 688999876644332212223467788999998888753321 001113566777777766666
Q ss_pred EeCCC
Q 000743 532 LRGTA 536 (1313)
Q Consensus 532 L~GH~ 536 (1313)
-.-|.
T Consensus 389 ~nlfn 393 (698)
T KOG2314|consen 389 KNLFN 393 (698)
T ss_pred cccee
Confidence 54443
No 322
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=92.72 E-value=7.2 Score=44.86 Aligned_cols=106 Identities=14% Similarity=0.119 Sum_probs=74.3
Q ss_pred EEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEec-------cCCCEEEEEECCCCCCCCCCCEEEEEe
Q 000743 391 LCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH-------HVAPVRQIILSPPQTEHPWSDCFLSVG 463 (1313)
Q Consensus 391 ~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~g-------H~~~V~sV~fsPd~~~~~~g~~LaSgS 463 (1313)
.-++|+ ||+ .+|+.+...|+|+++|+.. ..+..+.. -...|-.+.|.+......|...++...
T Consensus 47 Rkl~WS-----pD~----tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~ 116 (282)
T PF15492_consen 47 RKLAWS-----PDC----TLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVIN 116 (282)
T ss_pred eEEEEC-----CCC----cEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEe
Confidence 567898 566 8999999999999999864 33333332 234677888877655566777788888
Q ss_pred CCCeEEEEECCC-----CcEEEEec--C-CCCCcEEEEEcCCCCEEEEEec
Q 000743 464 EDFSVALASLET-----LRVERMFP--G-HPNYPAKVVWDCPRGYIACLCR 506 (1313)
Q Consensus 464 ~DgtV~LWDL~t-----~~~l~~l~--g-H~~~V~sVafsPdg~~Latgs~ 506 (1313)
-+|.++=|-+.. .+..+.|. . ++..|.++.++|..+.|++|+.
T Consensus 117 Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~ 167 (282)
T PF15492_consen 117 YRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGC 167 (282)
T ss_pred ccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEecc
Confidence 888887766532 23333332 2 4668999999999888777654
No 323
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=92.72 E-value=1.8 Score=56.61 Aligned_cols=131 Identities=14% Similarity=0.066 Sum_probs=90.4
Q ss_pred ccCCceEEEEEecCCcc-EEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCC-ceEEEEec----cCCCEEEEEE
Q 000743 373 KVNSHVSRQYFLGHTGA-VLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG-NLITVMHH----HVAPVRQIIL 446 (1313)
Q Consensus 373 dv~tg~~~~~L~GH~~~-V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg-~~l~t~~g----H~~~V~sV~f 446 (1313)
|++.|+.+....-|... |..++-.. ..+.-....-+.|=.+..+..||.+-. ..+..-.. ......|++-
T Consensus 510 DLe~GKVV~eW~~~~~~~v~~~~p~~----K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aT 585 (794)
T PF08553_consen 510 DLERGKVVEEWKVHDDIPVVDIAPDS----KFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFAT 585 (794)
T ss_pred ecCCCcEEEEeecCCCcceeEecccc----cccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEe
Confidence 67888999998888754 66654321 100011244566788999999999853 22221111 2335667776
Q ss_pred CCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEEC
Q 000743 447 SPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 523 (1313)
Q Consensus 447 sPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDl 523 (1313)
..+ .+||.|+.+|.|||||--..+....+++-..+|..|..+.||+||++.|. ..+-++|.
T Consensus 586 t~~-------G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~---------tyLlLi~t 646 (794)
T PF08553_consen 586 TED-------GYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK---------TYLLLIDT 646 (794)
T ss_pred cCC-------ceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec---------ceEEEEEE
Confidence 655 57999999999999995444555667777789999999999999998775 47777775
No 324
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.72 E-value=1.1 Score=53.93 Aligned_cols=129 Identities=15% Similarity=0.118 Sum_probs=95.7
Q ss_pred ecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCC------CceE---------EEEeccCCCEEEEEECC
Q 000743 384 LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS------GNLI---------TVMHHHVAPVRQIILSP 448 (1313)
Q Consensus 384 ~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~t------g~~l---------~t~~gH~~~V~sV~fsP 448 (1313)
.-|..+|.++.++|. | +..+|....|.|.-|.... .+.. ..+........++.|+|
T Consensus 141 klH~sPV~~i~y~qa-----~----Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp 211 (558)
T KOG0882|consen 141 KLHFSPVKKIRYNQA-----G----DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSP 211 (558)
T ss_pred ccccCceEEEEeecc-----c----cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcc
Confidence 458999999999862 2 6788888889999998762 1111 12223455678999999
Q ss_pred CCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEe--------------------------------cCCCCC-cEEEEEc
Q 000743 449 PQTEHPWSDCFLSVGEDFSVALASLETLRVERMF--------------------------------PGHPNY-PAKVVWD 495 (1313)
Q Consensus 449 d~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l--------------------------------~gH~~~-V~sVafs 495 (1313)
+ +..+.+-+.|.+|++++.++++.++.+ ..|... -+.+.|+
T Consensus 212 ~------g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fd 285 (558)
T KOG0882|consen 212 D------GAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFD 285 (558)
T ss_pred c------cCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEc
Confidence 9 788999999999999999988654422 133332 3578899
Q ss_pred CCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCC
Q 000743 496 CPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTA 536 (1313)
Q Consensus 496 Pdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~ 536 (1313)
..++||+-|..- -|+|.++.|++.+|.+--..
T Consensus 286 es~~flly~t~~---------gikvin~~tn~v~ri~gk~e 317 (558)
T KOG0882|consen 286 ESGNFLLYGTIL---------GIKVINLDTNTVVRILGKDE 317 (558)
T ss_pred CCCCEEEeecce---------eEEEEEeecCeEEEEeccch
Confidence 999999986543 58999999999988875433
No 325
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=91.93 E-value=0.27 Score=62.15 Aligned_cols=92 Identities=12% Similarity=0.132 Sum_probs=68.6
Q ss_pred CCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEEcC
Q 000743 417 DCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDC 496 (1313)
Q Consensus 417 DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafsP 496 (1313)
.|+|-|+- ++|++-+... ..-.+++++|||. .-.+++|=.-|.+.+|...+.+.-.....|+.++..+.|+|
T Consensus 40 ~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe------~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~ 111 (1416)
T KOG3617|consen 40 GGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPE------EFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSH 111 (1416)
T ss_pred CceEEEEe-cCCCCCcccc-cceehhhhccChH------HHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecC
Confidence 35676663 5666543222 1123567999998 34666776778899999888777777778999999999999
Q ss_pred CCCEEEEEecCCCCCCCCCCEEEEEECC
Q 000743 497 PRGYIACLCRDHSRTSDAVDVLFIWDVK 524 (1313)
Q Consensus 497 dg~~Latgs~DlsGssD~DgtIrVWDlr 524 (1313)
+|..++++..- |.+.+|...
T Consensus 112 ~G~~l~t~d~~--------g~v~lwr~d 131 (1416)
T KOG3617|consen 112 DGTVLMTLDNP--------GSVHLWRYD 131 (1416)
T ss_pred CCCeEEEcCCC--------ceeEEEEee
Confidence 99999997665 899999765
No 326
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=91.81 E-value=36 Score=41.07 Aligned_cols=97 Identities=8% Similarity=-0.046 Sum_probs=63.4
Q ss_pred cEEEEEeCCCcEEEEECCCCceEEEEeccCCC-EEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC
Q 000743 409 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAP-VRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN 487 (1313)
Q Consensus 409 ~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~-V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~ 487 (1313)
..++.++.|+.+...|..+|+.+-+...-.+. ..+..+. +..++.++.|+.+...|..+|+.+....-...
T Consensus 295 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--------~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~ 366 (394)
T PRK11138 295 GRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--------NGYLVVGDSEGYLHWINREDGRFVAQQKVDSS 366 (394)
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--------CCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC
Confidence 57777889999999999999876543321111 1111111 35788889999999999999998877654333
Q ss_pred CcE-EEEEcCCCCEEEEEecCCCCCCCCCCEEEEEEC
Q 000743 488 YPA-KVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 523 (1313)
Q Consensus 488 ~V~-sVafsPdg~~Latgs~DlsGssD~DgtIrVWDl 523 (1313)
.+. ...+ .+..|++++.| |.++.++.
T Consensus 367 ~~~s~P~~--~~~~l~v~t~~--------G~l~~~~~ 393 (394)
T PRK11138 367 GFLSEPVV--ADDKLLIQARD--------GTVYAITR 393 (394)
T ss_pred cceeCCEE--ECCEEEEEeCC--------ceEEEEeC
Confidence 332 1122 24467776665 88887764
No 327
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=91.64 E-value=2.3 Score=51.95 Aligned_cols=140 Identities=16% Similarity=0.177 Sum_probs=87.8
Q ss_pred CcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEEcCC
Q 000743 418 CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCP 497 (1313)
Q Consensus 418 gtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafsPd 497 (1313)
..+.+.++. +.-+.....-.++|...+|.|.+. +--+++|-.+.++.++|++.. ....++ ...=+.+.|+|.
T Consensus 255 snLyl~~~~-e~~i~V~~~~~~pVhdf~W~p~S~----~F~vi~g~~pa~~s~~~lr~N-l~~~~P--e~~rNT~~fsp~ 326 (561)
T COG5354 255 SNLYLLRIT-ERSIPVEKDLKDPVHDFTWEPLSS----RFAVISGYMPASVSVFDLRGN-LRFYFP--EQKRNTIFFSPH 326 (561)
T ss_pred ceEEEEeec-ccccceeccccccceeeeecccCC----ceeEEecccccceeecccccc-eEEecC--CcccccccccCc
Confidence 456666665 333333335678999999999842 224555668999999999865 444443 344568899999
Q ss_pred CCEEEEEecCCCCCCCCCCEEEEEECCCCcEE-EEEeCCCCceeEEeeecccccceeecccccCCcccccCcccccCCCc
Q 000743 498 RGYIACLCRDHSRTSDAVDVLFIWDVKTGARE-RVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGT 576 (1313)
Q Consensus 498 g~~Latgs~DlsGssD~DgtIrVWDlrTG~lv-~~L~GH~a~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~Dgt 576 (1313)
++|++.++.| -. .|.|-+||......+ ..+.|-.... +.|.+ +|... .+..++.-+.. |..
T Consensus 327 ~r~il~agF~--nl---~gni~i~~~~~rf~~~~~~~~~n~s~--~~wsp-------d~qF~--~~~~ts~k~~~--Dn~ 388 (561)
T COG5354 327 ERYILFAGFD--NL---QGNIEIFDPAGRFKVAGAFNGLNTSY--CDWSP-------DGQFY--DTDTTSEKLRV--DNS 388 (561)
T ss_pred ccEEEEecCC--cc---ccceEEeccCCceEEEEEeecCCceE--eeccC-------CceEE--EecCCCccccc--Ccc
Confidence 9999998876 22 278999998775544 3666665433 12333 12111 01122233333 888
Q ss_pred EEEEeCC
Q 000743 577 FRQSQIQ 583 (1313)
Q Consensus 577 Ir~Wdl~ 583 (1313)
+++||+.
T Consensus 389 i~l~~v~ 395 (561)
T COG5354 389 IKLWDVY 395 (561)
T ss_pred eEEEEec
Confidence 9999974
No 328
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=90.84 E-value=1.9 Score=55.15 Aligned_cols=70 Identities=20% Similarity=0.164 Sum_probs=60.2
Q ss_pred EEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEE
Q 000743 390 VLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVA 469 (1313)
Q Consensus 390 V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~ 469 (1313)
+++++|||. .-.|++|=.-|.+.+|...+.+.-..-..|..+|..+.|+|+ |.+++|+..-|.|.
T Consensus 62 atSLCWHpe---------~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~------G~~l~t~d~~g~v~ 126 (1416)
T KOG3617|consen 62 ATSLCWHPE---------EFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHD------GTVLMTLDNPGSVH 126 (1416)
T ss_pred hhhhccChH---------HHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCC------CCeEEEcCCCceeE
Confidence 667999972 357888888899999998887776666679999999999999 79999999999999
Q ss_pred EEECC
Q 000743 470 LASLE 474 (1313)
Q Consensus 470 LWDL~ 474 (1313)
+|...
T Consensus 127 lwr~d 131 (1416)
T KOG3617|consen 127 LWRYD 131 (1416)
T ss_pred EEEee
Confidence 99875
No 329
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=90.82 E-value=14 Score=43.32 Aligned_cols=86 Identities=19% Similarity=0.247 Sum_probs=51.9
Q ss_pred EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEe-----CCC
Q 000743 344 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGS-----MDC 418 (1313)
Q Consensus 344 ~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS-----~Dg 418 (1313)
.++++..-|+..+. ||..... ....-....-+.|.||- .|+ +|| ++|++.= ..|
T Consensus 19 avafaRRPG~~~~v-~D~~~g~-----~~~~~~a~~gRHFyGHg------~fs-----~dG----~~LytTEnd~~~g~G 77 (305)
T PF07433_consen 19 AVAFARRPGTFALV-FDCRTGQ-----LLQRLWAPPGRHFYGHG------VFS-----PDG----RLLYTTENDYETGRG 77 (305)
T ss_pred EEEEEeCCCcEEEE-EEcCCCc-----eeeEEcCCCCCEEecCE------EEc-----CCC----CEEEEeccccCCCcE
Confidence 46777777765542 5432110 00000112234567773 466 677 7777643 447
Q ss_pred cEEEEECC-CCceEEEEeccCCCEEEEEECCCC
Q 000743 419 SIRIWDLG-SGNLITVMHHHVAPVRQIILSPPQ 450 (1313)
Q Consensus 419 tIrVWDl~-tg~~l~t~~gH~~~V~sV~fsPd~ 450 (1313)
.|-|||.. +.+.+..|..|.=.-..+.+.|++
T Consensus 78 ~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG 110 (305)
T PF07433_consen 78 VIGVYDAARGYRRIGEFPSHGIGPHELLLMPDG 110 (305)
T ss_pred EEEEEECcCCcEEEeEecCCCcChhhEEEcCCC
Confidence 89999998 667788888776666677777774
No 330
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=90.00 E-value=15 Score=44.92 Aligned_cols=195 Identities=13% Similarity=0.119 Sum_probs=96.1
Q ss_pred ceecccCCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEe-cCCccEEEEEEec
Q 000743 319 RDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFL-GHTGAVLCLAAHR 397 (1313)
Q Consensus 319 ~~~~~~H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~-GH~~~V~sLafsP 397 (1313)
...+....+.|+++. +++..| ++.|+.+|.+.| .|+..+. -...-.+.. ..+. .....|+++.|..
T Consensus 79 ~~l~~~~~g~vtal~-~S~iGF----vaigy~~G~l~v--iD~RGPa--vI~~~~i~~----~~~~~~~~~~vt~ieF~v 145 (395)
T PF08596_consen 79 LTLLDAKQGPVTALK-NSDIGF----VAIGYESGSLVV--IDLRGPA--VIYNENIRE----SFLSKSSSSYVTSIEFSV 145 (395)
T ss_dssp EEEE---S-SEEEEE-E-BTSE----EEEEETTSEEEE--EETTTTE--EEEEEEGGG------T-SS----EEEEEEEE
T ss_pred hhheeccCCcEeEEe-cCCCcE----EEEEecCCcEEE--EECCCCe--EEeeccccc----cccccccccCeeEEEEEE
Confidence 344555678898844 467776 999999999999 5542220 000000000 0011 1235688888874
Q ss_pred cccCCCCCccCcEEEEEeCCCcEEEEECCC---Cce----EEEEeccCCCEEEEE-ECCCCCCC--------------CC
Q 000743 398 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGS---GNL----ITVMHHHVAPVRQII-LSPPQTEH--------------PW 455 (1313)
Q Consensus 398 ~~s~pDGr~~~~~LaSGS~DgtIrVWDl~t---g~~----l~t~~gH~~~V~sV~-fsPd~~~~--------------~~ 455 (1313)
+--..|+ +..-.++.|...|.+.+|.+.- +.. ......|.++|..+. |+.+.... ..
T Consensus 146 m~~~~D~-ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~ 224 (395)
T PF08596_consen 146 MTLGGDG-YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGIS 224 (395)
T ss_dssp EE-TTSS-SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT--
T ss_pred EecCCCc-ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCC
Confidence 3212233 3446888999999999998751 222 222234667777766 33331110 00
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEE-----cCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEE
Q 000743 456 SDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVW-----DCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 530 (1313)
Q Consensus 456 g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVaf-----sPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~ 530 (1313)
-+.++....+..+|++.+-+.+..++..........+++ ...+..|++-..| |.|+++.+-.-+.+.
T Consensus 225 i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~--------G~i~i~SLP~Lkei~ 296 (395)
T PF08596_consen 225 IPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNN--------GSIRIYSLPSLKEIK 296 (395)
T ss_dssp --EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETT--------SEEEEEETTT--EEE
T ss_pred cCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECC--------CcEEEEECCCchHhh
Confidence 133455556889999999888776655432222334455 2345567766655 999999998877666
Q ss_pred EEeCC
Q 000743 531 VLRGT 535 (1313)
Q Consensus 531 ~L~GH 535 (1313)
.+.-+
T Consensus 297 ~~~l~ 301 (395)
T PF08596_consen 297 SVSLP 301 (395)
T ss_dssp EEE-S
T ss_pred cccCC
Confidence 65544
No 331
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=89.55 E-value=25 Score=40.27 Aligned_cols=70 Identities=9% Similarity=-0.084 Sum_probs=55.9
Q ss_pred cEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecC
Q 000743 409 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPG 484 (1313)
Q Consensus 409 ~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~g 484 (1313)
++++-|...+.+.+-+..+|+....|..-..-=.+....++ +..|.+++.|+.....|.++..+++..+-
T Consensus 64 dfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~------~glIycgshd~~~yalD~~~~~cVykskc 133 (354)
T KOG4649|consen 64 DFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFD------GGLIYCGSHDGNFYALDPKTYGCVYKSKC 133 (354)
T ss_pred CEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCC------CceEEEecCCCcEEEecccccceEEeccc
Confidence 67999999999999999999888877643321122334555 68999999999999999999999988653
No 332
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=88.57 E-value=20 Score=40.03 Aligned_cols=103 Identities=12% Similarity=0.073 Sum_probs=71.8
Q ss_pred CCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCc--e--EEEE---eccCCCEEEEEECCCCCCCCCCCE
Q 000743 386 HTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN--L--ITVM---HHHVAPVRQIILSPPQTEHPWSDC 458 (1313)
Q Consensus 386 H~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~--~--l~t~---~gH~~~V~sV~fsPd~~~~~~g~~ 458 (1313)
.-...+.++|+| || ..++++-+..+.|..+|+.... . ...+ ..-.+....+++..+ |++
T Consensus 132 ~~~~pNGi~~s~-----dg---~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~------G~l 197 (246)
T PF08450_consen 132 GLGFPNGIAFSP-----DG---KTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSD------GNL 197 (246)
T ss_dssp EESSEEEEEEET-----TS---SEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTT------S-E
T ss_pred CcccccceEECC-----cc---hheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCC------CCE
Confidence 345678999994 55 2355678888999999986322 1 1222 222234788999988 788
Q ss_pred EEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEE-cCCCCEEEE
Q 000743 459 FLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVW-DCPRGYIAC 503 (1313)
Q Consensus 459 LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVaf-sPdg~~Lat 503 (1313)
.++.-..+.|.++|.+ |+.+..+.-....+++++| -|+.+.|++
T Consensus 198 ~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 198 WVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp EEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEE
T ss_pred EEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEE
Confidence 8888788999999987 8888877665558899999 456565554
No 333
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=87.38 E-value=1.4 Score=49.05 Aligned_cols=90 Identities=11% Similarity=0.081 Sum_probs=54.4
Q ss_pred cEEEEEeCCCcEEEEECCC-CceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC-
Q 000743 409 EVLVSGSMDCSIRIWDLGS-GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHP- 486 (1313)
Q Consensus 409 ~~LaSGS~DgtIrVWDl~t-g~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~- 486 (1313)
.-++.|+.|+.|.+|...- |.....+..-...|-+.. |.. +.+.+.++++.|+.|+.|++.-++.+-....|.
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I--p~~---~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~ 145 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI--PNG---RDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF 145 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhhhcccccceecc--ccc---cccceeEEeccCCceeeeccccCceeeeeccccC
Confidence 5788899999999998761 111111111112222221 221 124689999999999999999888887777776
Q ss_pred CCcEEEEEcCCCCEEEE
Q 000743 487 NYPAKVVWDCPRGYIAC 503 (1313)
Q Consensus 487 ~~V~sVafsPdg~~Lat 503 (1313)
.++........+.++..
T Consensus 146 ~~~e~~ivv~sd~~i~~ 162 (238)
T KOG2444|consen 146 ESGEELIVVGSDEFLKI 162 (238)
T ss_pred CCcceeEEecCCceEEe
Confidence 33333333344444443
No 334
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=87.11 E-value=1.2 Score=49.53 Aligned_cols=103 Identities=14% Similarity=0.175 Sum_probs=60.5
Q ss_pred EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEE
Q 000743 344 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 423 (1313)
Q Consensus 344 ~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVW 423 (1313)
.+++|+.+|.|.++.|++.... .+ ....-...|.+. + |.| ....+..+++.|+.||.|
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~------~d--------~~~s~~e~i~~~-I------p~~-~~~~~~c~~~~dg~ir~~ 129 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAH------SD--------RVCSGEESIDLG-I------PNG-RDSSLGCVGAQDGRIRAC 129 (238)
T ss_pred eEEeecccceEEEecCCccchH------HH--------hhhcccccceec-c------ccc-cccceeEEeccCCceeee
Confidence 5999999999999887632110 00 000111122222 2 222 122588899999999999
Q ss_pred ECCCCceEEEEeccC-CCEEEEEECCCCCCCCCCCEEEEE--eCCCeEEEEECC
Q 000743 424 DLGSGNLITVMHHHV-APVRQIILSPPQTEHPWSDCFLSV--GEDFSVALASLE 474 (1313)
Q Consensus 424 Dl~tg~~l~t~~gH~-~~V~sV~fsPd~~~~~~g~~LaSg--S~DgtV~LWDL~ 474 (1313)
++.-++.+...-+|. .++........ +..+.+. |.|..++.|++.
T Consensus 130 n~~p~k~~g~~g~h~~~~~e~~ivv~s------d~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 130 NIKPNKVLGYVGQHNFESGEELIVVGS------DEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ccccCceeeeeccccCCCcceeEEecC------CceEEeeccccchhhhhcchh
Confidence 999888777776676 34443333332 3455555 556666666654
No 335
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=86.67 E-value=39 Score=45.74 Aligned_cols=159 Identities=13% Similarity=0.101 Sum_probs=91.7
Q ss_pred ceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEec-CCccEEEEEEeccccCCCCC
Q 000743 327 KIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLG-HTGAVLCLAAHRMVGTAKGW 405 (1313)
Q Consensus 327 ~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~G-H~~~V~sLafsP~~s~pDGr 405 (1313)
+.|.+..+..+.. .++.+..+|+|.+. |. .+. .....| -.+.|.+.+|+| |+
T Consensus 69 ~~i~s~~fl~d~~----~i~v~~~~G~iilv--d~-------------et~--~~eivg~vd~GI~aaswS~-----De- 121 (1265)
T KOG1920|consen 69 DEIVSVQFLADTN----SICVITALGDIILV--DP-------------ETL--ELEIVGNVDNGISAASWSP-----DE- 121 (1265)
T ss_pred cceEEEEEecccc----eEEEEecCCcEEEE--cc-------------ccc--ceeeeeeccCceEEEeecC-----CC-
Confidence 4555644443333 58888999999985 21 111 111222 246799999984 55
Q ss_pred ccCcEEEEEeCCCcEEEEEC----CCCce-------------------EEEEeccCC---------------------CE
Q 000743 406 SFNEVLVSGSMDCSIRIWDL----GSGNL-------------------ITVMHHHVA---------------------PV 441 (1313)
Q Consensus 406 ~~~~~LaSGS~DgtIrVWDl----~tg~~-------------------l~t~~gH~~---------------------~V 441 (1313)
++++-.+.+.++.+-+- -..++ ...|.|-.+ .=
T Consensus 122 ---e~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~ 198 (1265)
T KOG1920|consen 122 ---ELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHK 198 (1265)
T ss_pred ---cEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCC
Confidence 88888888888776543 11111 122332111 11
Q ss_pred EEEEECCCCCCCCCCCEEEEE----eCC-CeEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCC
Q 000743 442 RQIILSPPQTEHPWSDCFLSV----GED-FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVD 516 (1313)
Q Consensus 442 ~sV~fsPd~~~~~~g~~LaSg----S~D-gtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~Dg 516 (1313)
++|.|--| |++|+.. ..| +.+++||-+ |..-.+-..-.+-=.+++|.|.|..+++-..+ ++| +
T Consensus 199 ~~IsWRgD------g~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~---~sd--~ 266 (1265)
T KOG1920|consen 199 TSISWRGD------GEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCK---TSD--S 266 (1265)
T ss_pred ceEEEccC------CcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeec---CCC--C
Confidence 24666555 6777762 234 899999966 43322222222222489999999999886554 333 6
Q ss_pred EEEEEECCCCcE
Q 000743 517 VLFIWDVKTGAR 528 (1313)
Q Consensus 517 tIrVWDlrTG~l 528 (1313)
.|.++. ++|-.
T Consensus 267 ~IvffE-rNGL~ 277 (1265)
T KOG1920|consen 267 DIVFFE-RNGLR 277 (1265)
T ss_pred cEEEEe-cCCcc
Confidence 899998 56644
No 336
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=86.36 E-value=91 Score=38.23 Aligned_cols=210 Identities=15% Similarity=0.150 Sum_probs=107.4
Q ss_pred EEEEEEcCCcEEEEEeeccccCC-----C--------------CCCcc--------ccCCc-eEEEEEecCCccEEEEEE
Q 000743 344 AIVYGFFSGEIEVIQFDLFERHN-----S--------------PGASL--------KVNSH-VSRQYFLGHTGAVLCLAA 395 (1313)
Q Consensus 344 ~LvsGs~DGsI~I~~wdll~~~~-----~--------------~~~~w--------dv~tg-~~~~~L~GH~~~V~sLaf 395 (1313)
-+++|..+|+|.+++|....... . ....- +++.| .+...+...++.|++++.
T Consensus 15 Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~g~vtal~~ 94 (395)
T PF08596_consen 15 ELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQGPVTALKN 94 (395)
T ss_dssp EEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE---S-SEEEEEE
T ss_pred eEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhheeccCCcEeEEec
Confidence 59999999999999995322111 0 01111 11122 355556667899999998
Q ss_pred eccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEe--c------cCCCEEEEEECCCCC--CCCCCCEEEEEeCC
Q 000743 396 HRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMH--H------HVAPVRQIILSPPQT--EHPWSDCFLSVGED 465 (1313)
Q Consensus 396 sP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~--g------H~~~V~sV~fsPd~~--~~~~g~~LaSgS~D 465 (1313)
+- --+++.|..||++.|-|++....+..-. . ....|+++.|..-.. ..-..-+++.|...
T Consensus 95 S~----------iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~ 164 (395)
T PF08596_consen 95 SD----------IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNS 164 (395)
T ss_dssp -B----------TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETT
T ss_pred CC----------CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCC
Confidence 62 2499999999999999999888776622 1 233688888863110 00002478888899
Q ss_pred CeEEEEECCC---Cc----EEEEecCCCCCcEEEE-EcCC---------------------CCEEEEEecCCCCCCCCCC
Q 000743 466 FSVALASLET---LR----VERMFPGHPNYPAKVV-WDCP---------------------RGYIACLCRDHSRTSDAVD 516 (1313)
Q Consensus 466 gtV~LWDL~t---~~----~l~~l~gH~~~V~sVa-fsPd---------------------g~~Latgs~DlsGssD~Dg 516 (1313)
|.+.+|.+.- +. .......+.+++..+. |+.+ ..++++.+ + .
T Consensus 165 G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-e--------~ 235 (395)
T PF08596_consen 165 GNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-E--------S 235 (395)
T ss_dssp SEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--S--------S
T ss_pred CCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-c--------c
Confidence 9999998751 11 1112224555665444 3221 11444333 2 6
Q ss_pred EEEEEECCCCcEEEEEeCCCCceeEEeeecccccceeecccccCCcccccCcccccCCCcEEEEeCCc
Q 000743 517 VLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 584 (1313)
Q Consensus 517 tIrVWDlrTG~lv~~L~GH~a~Vi~~~~c~~~s~~ivSGS~l~g~~l~S~~lvs~s~DgtIr~Wdl~~ 584 (1313)
.+|++..-+.+...... .....+...|.. + ... ......++.++.||.+++..+..
T Consensus 236 ~irv~~~~~~k~~~K~~--~~~~~~~~~~vv--~-~~~-------~~~~~~Lv~l~~~G~i~i~SLP~ 291 (395)
T PF08596_consen 236 DIRVFKPPKSKGAHKSF--DDPFLCSSASVV--P-TIS-------RNGGYCLVCLFNNGSIRIYSLPS 291 (395)
T ss_dssp EEEEE-TT---EEEEE---SS-EEEEEEEEE--E-EE--------EEEEEEEEEEETTSEEEEEETTT
T ss_pred ceEEEeCCCCcccceee--ccccccceEEEE--e-ecc-------cCCceEEEEEECCCcEEEEECCC
Confidence 89999988877654443 322322211110 0 000 01233567778899999999854
No 337
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.06 E-value=1.7 Score=57.13 Aligned_cols=86 Identities=23% Similarity=0.342 Sum_probs=65.5
Q ss_pred CeeeecCCCceEEeeccccccCCceEEEEECcCcceEEEEecCCCCCCCCCCCcccccceEEEEECCCCCeEEEEecCCc
Q 000743 1131 PMVSLNDTSTKLAVGDAIGDIKKASIRVYDMQSVTKIKVLDASGPPGLPRESDSVATTVISALIFSPDGEGLVAFSEHGL 1210 (1313)
Q Consensus 1131 p~Vsf~~~tqrlAVG~~~~~~~~g~i~iydl~t~~k~~~l~~h~~~~~~~~~~~~~~~~i~a~~fs~dG~~l~~~s~~~~ 1210 (1313)
-.|+|++.+.+++-|-. +|.|.|||+.++..+++|+-||.|+ ++.|.-.-|+ ++..+-+-...|.
T Consensus 134 tsvafn~dg~~l~~G~~-----~G~V~v~D~~~~k~l~~i~e~~ap~---------t~vi~v~~t~-~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 134 TSVAFNQDGSLLLAGLG-----DGHVTVWDMHRAKILKVITEHGAPV---------TGVIFVGRTS-QNSKLLTSDTGGS 198 (1206)
T ss_pred eeeEecCCCceeccccC-----CCcEEEEEccCCcceeeeeecCCcc---------ceEEEEEEeC-CCcEEEEccCCCc
Confidence 46899999999999999 9999999999999999999998886 7888888887 4443333333343
Q ss_pred eEEEEEc--CcchhccccCCCCccceeee
Q 000743 1211 MIRWWSL--GSVWWEKLSRSLVPVQCTKL 1237 (1313)
Q Consensus 1211 ~~~~w~~--~~~~~~~lg~~~~~~~c~k~ 1237 (1313)
||++ +..++ ++...+.||...
T Consensus 199 ---f~~lv~nk~~L---~~~~~kskcl~s 221 (1206)
T KOG2079|consen 199 ---FWKLVFNKALL---NMNTDKSKCLLS 221 (1206)
T ss_pred ---eEEEEechhhh---cccchHHHHhhc
Confidence 9988 34444 444577788543
No 338
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=85.85 E-value=15 Score=45.57 Aligned_cols=135 Identities=14% Similarity=0.125 Sum_probs=72.1
Q ss_pred ccccCCE-EEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeC
Q 000743 338 SFYAPYA-IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSM 416 (1313)
Q Consensus 338 ~~fsP~~-LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~ 416 (1313)
..++|++ .++-+.||...|+.- ...+... .+.-....|.+ ++.++.-..
T Consensus 38 ls~npngr~v~V~g~geY~iyt~---------------~~~r~k~-----~G~g~~~vw~~----------~n~yAv~~~ 87 (443)
T PF04053_consen 38 LSHNPNGRFVLVCGDGEYEIYTA---------------LAWRNKA-----FGSGLSFVWSS----------RNRYAVLES 87 (443)
T ss_dssp EEE-TTSSEEEEEETTEEEEEET---------------TTTEEEE-----EEE-SEEEE-T----------SSEEEEE-T
T ss_pred EEECCCCCEEEEEcCCEEEEEEc---------------cCCcccc-----cCceeEEEEec----------CccEEEEEC
Confidence 4455653 444578999888431 0111211 12234567762 245777777
Q ss_pred CCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEEcC
Q 000743 417 DCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDC 496 (1313)
Q Consensus 417 DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafsP 496 (1313)
.++|+++.-...+...+++. ...+..+-. |.+|+..+. +.|.+||..+++.++.+... +|..+.|++
T Consensus 88 ~~~I~I~kn~~~~~~k~i~~-~~~~~~If~---------G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~ 154 (443)
T PF04053_consen 88 SSTIKIYKNFKNEVVKSIKL-PFSVEKIFG---------GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSD 154 (443)
T ss_dssp TS-EEEEETTEE-TT------SS-EEEEE----------SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-T
T ss_pred CCeEEEEEcCccccceEEcC-CcccceEEc---------CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEEC
Confidence 88999974333333223331 123444432 355555554 48999999999999999754 489999999
Q ss_pred CCCEEEEEecCCCCCCCCCCEEEEEECC
Q 000743 497 PRGYIACLCRDHSRTSDAVDVLFIWDVK 524 (1313)
Q Consensus 497 dg~~Latgs~DlsGssD~DgtIrVWDlr 524 (1313)
++.+++-.+.+ +++|++..
T Consensus 155 ~g~~val~t~~---------~i~il~~~ 173 (443)
T PF04053_consen 155 DGELVALVTKD---------SIYILKYN 173 (443)
T ss_dssp TSSEEEEE-S----------SEEEEEE-
T ss_pred CCCEEEEEeCC---------eEEEEEec
Confidence 99999987654 78888754
No 339
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=85.72 E-value=3.5 Score=52.16 Aligned_cols=104 Identities=11% Similarity=0.030 Sum_probs=77.0
Q ss_pred CcEEEEEeCCCcEEEEECCCCceE-EEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcE---EEEe-
Q 000743 408 NEVLVSGSMDCSIRIWDLGSGNLI-TVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRV---ERMF- 482 (1313)
Q Consensus 408 ~~~LaSGS~DgtIrVWDl~tg~~l-~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~---l~~l- 482 (1313)
..+++-|+.-|.+.+++-..++.. .+..+-.+.+....++++ ..+++.|+..+.|.++-+....+ .+.-
T Consensus 45 ~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~------e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~ 118 (726)
T KOG3621|consen 45 EEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSV------EYLVAAGTASGRVSVFQLNKELPRDLDYVTP 118 (726)
T ss_pred CceEEEecccceEEEEecCchhhhcccccCccceEEEEEecch------hHhhhhhcCCceEEeehhhccCCCcceeecc
Confidence 379999999999999998777643 334444555666677777 46788888888999988765422 2211
Q ss_pred --cCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCC
Q 000743 483 --PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 525 (1313)
Q Consensus 483 --~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrT 525 (1313)
..|...|++++|++++..+++|..- |+|..-.+.+
T Consensus 119 ~d~~~~~rVTal~Ws~~~~k~ysGD~~--------Gkv~~~~L~s 155 (726)
T KOG3621|consen 119 CDKSHKCRVTALEWSKNGMKLYSGDSQ--------GKVVLTELDS 155 (726)
T ss_pred ccccCCceEEEEEecccccEEeecCCC--------ceEEEEEech
Confidence 2366789999999999999986544 8988887766
No 340
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=84.85 E-value=0.78 Score=58.81 Aligned_cols=148 Identities=11% Similarity=0.074 Sum_probs=90.2
Q ss_pred EecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECC--CCceEE-----EEeccCCCEEEEEECCCCCCCCC
Q 000743 383 FLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLG--SGNLIT-----VMHHHVAPVRQIILSPPQTEHPW 455 (1313)
Q Consensus 383 L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~--tg~~l~-----t~~gH~~~V~sV~fsPd~~~~~~ 455 (1313)
++|..|.|..+.|.+. ..|.| . -.=|...|||++ .|+... ........+.-|.|.|--+ .
T Consensus 128 ~kgf~G~v~dl~fah~-~~pk~-------~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~---~ 194 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHT-KCPKG-------R--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAV---N 194 (1283)
T ss_pred HhcCCCCccccccccc-CChHH-------H--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeeccccc---c
Confidence 4677888999998531 11222 1 223578899987 454332 2333455667778877532 1
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEEE-----------EcCCCCEEEEEecCCCCCCCCCCEEEEEECC
Q 000743 456 SDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVV-----------WDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 524 (1313)
Q Consensus 456 g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVa-----------fsPdg~~Latgs~DlsGssD~DgtIrVWDlr 524 (1313)
.-+++.+-.+++|++.+...... ..+.+|..++..++ .+|||..+++.|.| |+.. +-.|||.+.+
T Consensus 195 ~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~d--G~v~-f~Qiyi~g~~ 270 (1283)
T KOG1916|consen 195 KVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISD--GSVG-FYQIYITGKI 270 (1283)
T ss_pred cceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecC--Cccc-eeeeeeeccc
Confidence 35788888899999887654322 45566766554443 59999999998887 3222 1234444445
Q ss_pred CCcEEEEEeCCCCceeEEeeecc
Q 000743 525 TGARERVLRGTASHSMFDHFCKG 547 (1313)
Q Consensus 525 TG~lv~~L~GH~a~Vi~~~~c~~ 547 (1313)
.-++....+-|..+-..+-.|..
T Consensus 271 ~~rclhewkphd~~p~vC~lc~~ 293 (1283)
T KOG1916|consen 271 VHRCLHEWKPHDKHPRVCWLCHK 293 (1283)
T ss_pred cHhhhhccCCCCCCCceeeeecc
Confidence 55667777788854433333653
No 341
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.07 E-value=13 Score=42.54 Aligned_cols=109 Identities=18% Similarity=0.059 Sum_probs=81.4
Q ss_pred CcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC
Q 000743 408 NEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN 487 (1313)
Q Consensus 408 ~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~ 487 (1313)
..+++-||..+.++--|..+|+.+-.-. -..++.+-+.- - |++++-|+..+.+.+.+..+|.....+..-.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-v------gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~- 93 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-V------GDFVVLGCYSGGLYFLCVKTGSQIWNFVILE- 93 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-E------CCEEEEEEccCcEEEEEecchhheeeeeehh-
Confidence 4678888888888888888887654432 22334332222 1 6889999999999999999998887776443
Q ss_pred Cc-EEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEe
Q 000743 488 YP-AKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 533 (1313)
Q Consensus 488 ~V-~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~ 533 (1313)
.| .....++++..+.+|+.| ++.|.-|.++..++...+
T Consensus 94 ~vk~~a~~d~~~glIycgshd--------~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 94 TVKVRAQCDFDGGLIYCGSHD--------GNFYALDPKTYGCVYKSK 132 (354)
T ss_pred hhccceEEcCCCceEEEecCC--------CcEEEecccccceEEecc
Confidence 33 245568899999998887 999999999988887654
No 342
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=84.05 E-value=30 Score=34.86 Aligned_cols=92 Identities=12% Similarity=0.052 Sum_probs=57.3
Q ss_pred EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEE
Q 000743 344 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 423 (1313)
Q Consensus 344 ~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVW 423 (1313)
.|+.|+.|..|++ |+ ....+..+.. ++.|.+|.... ...++-|-..|||.++
T Consensus 17 eLlvGs~D~~IRv--f~---------------~~e~~~Ei~e-~~~v~~L~~~~----------~~~F~Y~l~NGTVGvY 68 (111)
T PF14783_consen 17 ELLVGSDDFEIRV--FK---------------GDEIVAEITE-TDKVTSLCSLG----------GGRFAYALANGTVGVY 68 (111)
T ss_pred eEEEecCCcEEEE--Ee---------------CCcEEEEEec-ccceEEEEEcC----------CCEEEEEecCCEEEEE
Confidence 5999999999999 53 1134555544 35688887652 2578999999999998
Q ss_pred ECCCCceEEEEeccCCCEEEEEECCCCCCCCCC-CEEEEEeCCCeEE
Q 000743 424 DLGSGNLITVMHHHVAPVRQIILSPPQTEHPWS-DCFLSVGEDFSVA 469 (1313)
Q Consensus 424 Dl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g-~~LaSgS~DgtV~ 469 (1313)
+- .+.+-+.+.- ..++++.+..... .| ..|++|-.+|.|-
T Consensus 69 ~~--~~RlWRiKSK-~~~~~~~~~D~~g---dG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 69 DR--SQRLWRIKSK-NQVTSMAFYDING---DGVPELIVGWSNGKVE 109 (111)
T ss_pred eC--cceeeeeccC-CCeEEEEEEcCCC---CCceEEEEEecCCeEE
Confidence 75 2333334322 2355555443210 01 3678887777763
No 343
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=84.05 E-value=17 Score=48.85 Aligned_cols=107 Identities=12% Similarity=0.197 Sum_probs=65.8
Q ss_pred cEEEE-----EeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEe---CCCeEEEEECC---CCc
Q 000743 409 EVLVS-----GSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG---EDFSVALASLE---TLR 477 (1313)
Q Consensus 409 ~~LaS-----GS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS---~DgtV~LWDL~---t~~ 477 (1313)
++++. ...-++|+|||-+ |..-..-....+-=.++.|-|. |..+++.. +|+.|.++.-+ .+.
T Consensus 208 ~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPs------gs~iA~iq~~~sd~~IvffErNGL~hg~ 280 (1265)
T KOG1920|consen 208 EYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPS------GSLIAAIQCKTSDSDIVFFERNGLRHGE 280 (1265)
T ss_pred cEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCC------CCeEeeeeecCCCCcEEEEecCCccccc
Confidence 77776 3333899999977 4432222222333457889887 67777754 46678888732 222
Q ss_pred EEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCc
Q 000743 478 VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 527 (1313)
Q Consensus 478 ~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~ 527 (1313)
....++....++..++|+.++..|++--.+ +. ...|++|-+.+-+
T Consensus 281 f~l~~p~de~~ve~L~Wns~sdiLAv~~~~--~e---~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 281 FVLPFPLDEKEVEELAWNSNSDILAVVTSN--LE---NSLVQLWTTGNYH 325 (1265)
T ss_pred cccCCcccccchheeeecCCCCceeeeecc--cc---cceEEEEEecCeE
Confidence 222333344458899999999999873322 11 1459999876643
No 344
>PRK02888 nitrous-oxide reductase; Validated
Probab=82.73 E-value=26 Score=44.95 Aligned_cols=56 Identities=16% Similarity=0.117 Sum_probs=42.7
Q ss_pred CCCeEEEEECCC-----CcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCc
Q 000743 464 EDFSVALASLET-----LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 527 (1313)
Q Consensus 464 ~DgtV~LWDL~t-----~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~ 527 (1313)
.++.|.+.|.++ .+.+..++- ...+..+.++|||+++++++.- +.+|.|.|+++.+
T Consensus 294 ~gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVankl-------S~tVSVIDv~k~k 354 (635)
T PRK02888 294 GGSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKL-------SPTVTVIDVRKLD 354 (635)
T ss_pred CCCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCC-------CCcEEEEEChhhh
Confidence 367899999988 355555543 3467899999999999987653 2899999998754
No 345
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.65 E-value=10 Score=46.99 Aligned_cols=131 Identities=13% Similarity=0.063 Sum_probs=87.4
Q ss_pred ccCCceEEEEEecCCccEEEEEEeccccCCCCC-ccCcEEEEEeCCCcEEEEECCC-Cc-eEEEEeccC----CCEEEEE
Q 000743 373 KVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGW-SFNEVLVSGSMDCSIRIWDLGS-GN-LITVMHHHV----APVRQII 445 (1313)
Q Consensus 373 dv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr-~~~~~LaSGS~DgtIrVWDl~t-g~-~l~t~~gH~----~~V~sV~ 445 (1313)
|++.|+.+...+-|.+ |+-+.+.|. .++. -....-+.|=.|..|+-||.+- +. .+..-.+|. ..-.|.+
T Consensus 362 DIE~GKIVeEWk~~~d-i~mv~~t~d---~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~a 437 (644)
T KOG2395|consen 362 DIERGKIVEEWKFEDD-INMVDITPD---FKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFA 437 (644)
T ss_pred ecccceeeeEeeccCC-cceeeccCC---cchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceee
Confidence 7788888888888877 777777752 1110 0012223466789999999883 22 232223332 1233444
Q ss_pred ECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEEC
Q 000743 446 LSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 523 (1313)
Q Consensus 446 fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDl 523 (1313)
-..+ .+|+.||.+|.|||||--..+....+++-..+|..|..+.+|++|++.|. ..+-+-|+
T Consensus 438 TT~s-------G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~---------tyLlLi~t 499 (644)
T KOG2395|consen 438 TTES-------GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK---------TYLLLIDT 499 (644)
T ss_pred ecCC-------ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc---------cEEEEEEE
Confidence 3333 58999999999999997444555678888889999999999999997775 46666664
No 346
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=82.38 E-value=0.68 Score=57.56 Aligned_cols=105 Identities=19% Similarity=0.240 Sum_probs=67.8
Q ss_pred cCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEE-CCCCc-EEEEecC
Q 000743 407 FNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALAS-LETLR-VERMFPG 484 (1313)
Q Consensus 407 ~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWD-L~t~~-~l~~l~g 484 (1313)
+..++++|...+.++++|++... .......+..|..+.+.|-. ++++|+-. |+.|.+|| .+.-+ +++.+..
T Consensus 165 d~klvlaGm~sr~~~ifdlRqs~-~~~~svnTk~vqG~tVdp~~-----~nY~cs~~-dg~iAiwD~~rnienpl~~i~~ 237 (783)
T KOG1008|consen 165 DTKLVLAGMTSRSVHIFDLRQSL-DSVSSVNTKYVQGITVDPFS-----PNYFCSNS-DGDIAIWDTYRNIENPLQIILR 237 (783)
T ss_pred Ccchhhcccccchhhhhhhhhhh-hhhhhhhhhhcccceecCCC-----CCceeccc-cCceeeccchhhhccHHHHHhh
Confidence 34788999999999999997321 11111234456667777742 46777766 99999999 43322 2233322
Q ss_pred CCC----CcEEEEEcCCCC-EEEEEecCCCCCCCCCCEEEEEECCC
Q 000743 485 HPN----YPAKVVWDCPRG-YIACLCRDHSRTSDAVDVLFIWDVKT 525 (1313)
Q Consensus 485 H~~----~V~sVafsPdg~-~Latgs~DlsGssD~DgtIrVWDlrT 525 (1313)
.+. .+..++|.|... .+++...| .++|+++|+..
T Consensus 238 ~~N~~~~~l~~~aycPtrtglla~l~Rd-------S~tIrlydi~~ 276 (783)
T KOG1008|consen 238 NENKKPKQLFALAYCPTRTGLLAVLSRD-------SITIRLYDICV 276 (783)
T ss_pred CCCCcccceeeEEeccCCcchhhhhccC-------cceEEEecccc
Confidence 222 478999999776 44554444 38999999863
No 347
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=81.54 E-value=88 Score=37.88 Aligned_cols=111 Identities=19% Similarity=0.192 Sum_probs=68.2
Q ss_pred CCCCccCcEEEEEeCCC----cEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCC-----------C
Q 000743 402 AKGWSFNEVLVSGSMDC----SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGED-----------F 466 (1313)
Q Consensus 402 pDGr~~~~~LaSGS~Dg----tIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~D-----------g 466 (1313)
||| ..++++-+..| ++++.|+.+|+.+..--.... -..+.|.++ ++.|+....| .
T Consensus 133 pdg---~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~-~~~~~W~~d------~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 133 PDG---KRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK-FSSVSWSDD------GKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp TTS---SEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE-SEEEEECTT------SSEEEEEECSTTTSS-CCGCCE
T ss_pred CCC---CEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc-cceEEEeCC------CCEEEEEEeCcccccccCCCCc
Confidence 566 23444545444 599999999987653211111 123999998 5655555433 2
Q ss_pred eEEEEECCCCcE--EEEecCCCCC--cEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCC
Q 000743 467 SVALASLETLRV--ERMFPGHPNY--PAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 526 (1313)
Q Consensus 467 tV~LWDL~t~~~--l~~l~gH~~~--V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG 526 (1313)
.|..|.+.+... ...+...... ...+..++++++|+..+.. +.. ...+++-|..++
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~--~~~--~s~v~~~d~~~~ 262 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSS--GTS--ESEVYLLDLDDG 262 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEES--SSS--EEEEEEEECCCT
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEc--ccc--CCeEEEEecccc
Confidence 478888876643 2455544433 4588899999999876654 333 167999999875
No 348
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=80.81 E-value=1 Score=57.83 Aligned_cols=127 Identities=12% Similarity=0.040 Sum_probs=73.5
Q ss_pred cEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCC-----CCCCCCEEEEEe
Q 000743 389 AVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQT-----EHPWSDCFLSVG 463 (1313)
Q Consensus 389 ~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~-----~~~~g~~LaSgS 463 (1313)
.+.-+.|.|.+ + ..-++.-+-.|++|++-.+.+... .-|.+|..+++.++|-..+. -.+.|..|+.++
T Consensus 182 ~~~~V~wcp~~--~----~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~ 254 (1283)
T KOG1916|consen 182 DPQLVSWCPIA--V----NKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAI 254 (1283)
T ss_pred Ccceeeecccc--c----ccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEee
Confidence 34555666522 1 225677777888999877665433 33556877777655432211 022388999999
Q ss_pred CCCeEEEEECC-----CCcEEEEecCCCCCc-EEEEEcCCCC---------EEEEEecCCCCCCCCCCEEEEEECCCCcE
Q 000743 464 EDFSVALASLE-----TLRVERMFPGHPNYP-AKVVWDCPRG---------YIACLCRDHSRTSDAVDVLFIWDVKTGAR 528 (1313)
Q Consensus 464 ~DgtV~LWDL~-----t~~~l~~l~gH~~~V-~sVafsPdg~---------~Latgs~DlsGssD~DgtIrVWDlrTG~l 528 (1313)
.||.++.|.+. .-+|++..+.|.... .|.-++.+.. +++++ +|....+++|.-...+|
T Consensus 255 ~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itt-------td~nre~k~w~~a~w~C 327 (1283)
T KOG1916|consen 255 SDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITT-------TDVNREEKFWAEAPWQC 327 (1283)
T ss_pred cCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEec-------ccCCcceeEeeccchhh
Confidence 99999888753 335666677776433 2322333221 34432 33446788887655444
Q ss_pred E
Q 000743 529 E 529 (1313)
Q Consensus 529 v 529 (1313)
.
T Consensus 328 l 328 (1283)
T KOG1916|consen 328 L 328 (1283)
T ss_pred h
Confidence 3
No 349
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=79.39 E-value=4.3 Score=34.50 Aligned_cols=33 Identities=15% Similarity=0.198 Sum_probs=28.5
Q ss_pred CCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcE
Q 000743 487 NYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 528 (1313)
Q Consensus 487 ~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~l 528 (1313)
..|.+++|+|..+.|+.+..| |.|.++.+ +++.
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~--------g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTED--------GEVLVYRL-NWQR 44 (47)
T ss_pred CcEEEEEECCCCCEEEEEECC--------CeEEEEEC-CCcC
Confidence 468999999999999998776 99999998 6654
No 350
>PRK02888 nitrous-oxide reductase; Validated
Probab=79.22 E-value=17 Score=46.54 Aligned_cols=94 Identities=13% Similarity=0.085 Sum_probs=67.4
Q ss_pred CCCcEEEEECCC----C-ceEEEEeccCCCEEEEEECCCCCCCCCCCE-EEEEeCCCeEEEEECCCCcE-----------
Q 000743 416 MDCSIRIWDLGS----G-NLITVMHHHVAPVRQIILSPPQTEHPWSDC-FLSVGEDFSVALASLETLRV----------- 478 (1313)
Q Consensus 416 ~DgtIrVWDl~t----g-~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~-LaSgS~DgtV~LWDL~t~~~----------- 478 (1313)
.+++|.+.|..+ + +.+..+. -......+.++|| |++ ++++..+.+|.+.|+.+.+.
T Consensus 294 ~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPD------GkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~ 366 (635)
T PRK02888 294 GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPD------GKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDA 366 (635)
T ss_pred CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCC------CCEEEEeCCCCCcEEEEEChhhhhhhhccCCccce
Confidence 367899999998 4 3444443 5667889999999 565 55556699999999987553
Q ss_pred -EEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCC
Q 000743 479 -ERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 525 (1313)
Q Consensus 479 -l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrT 525 (1313)
+....- ...+...+|+++|....+...| ..|-.||+.+
T Consensus 367 vvaevev-GlGPLHTaFDg~G~aytslf~d--------sqv~kwn~~~ 405 (635)
T PRK02888 367 VVAEPEL-GLGPLHTAFDGRGNAYTTLFLD--------SQIVKWNIEA 405 (635)
T ss_pred EEEeecc-CCCcceEEECCCCCEEEeEeec--------ceeEEEehHH
Confidence 222222 2245678999999866665555 8999999876
No 351
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=78.92 E-value=99 Score=38.79 Aligned_cols=103 Identities=14% Similarity=0.176 Sum_probs=62.5
Q ss_pred CCCcEEEEECCCCceEEEEeccCCC--------------------EE-EEEECCCCCCCCCCCEEEEEeCCC--------
Q 000743 416 MDCSIRIWDLGSGNLITVMHHHVAP--------------------VR-QIILSPPQTEHPWSDCFLSVGEDF-------- 466 (1313)
Q Consensus 416 ~DgtIrVWDl~tg~~l~t~~gH~~~--------------------V~-sV~fsPd~~~~~~g~~LaSgS~Dg-------- 466 (1313)
.++.+...|..+|+.+-++...... |. +..+.+. +..++.++.|+
T Consensus 173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~------~g~V~vg~~~g~~~~~~~~ 246 (488)
T cd00216 173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPK------TNLVYVGTGNGSPWNWGGR 246 (488)
T ss_pred CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCC------CCEEEEECCCCCCCccCCc
Confidence 4678999999999988777542111 10 1222222 35566665554
Q ss_pred ----------eEEEEECCCCcEEEEecC--CCCC----cEEEEEc----CCCC---EEEEEecCCCCCCCCCCEEEEEEC
Q 000743 467 ----------SVALASLETLRVERMFPG--HPNY----PAKVVWD----CPRG---YIACLCRDHSRTSDAVDVLFIWDV 523 (1313)
Q Consensus 467 ----------tV~LWDL~t~~~l~~l~g--H~~~----V~sVafs----Pdg~---~Latgs~DlsGssD~DgtIrVWDl 523 (1313)
++.-+|.++++.+..+.. |... .....+. -++. .+++++.+ |.++..|.
T Consensus 247 ~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~--------G~l~ald~ 318 (488)
T cd00216 247 RTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKN--------GFFYVLDR 318 (488)
T ss_pred cCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCC--------ceEEEEEC
Confidence 788899999999887642 2110 0000111 1232 56665555 99999999
Q ss_pred CCCcEEEEE
Q 000743 524 KTGARERVL 532 (1313)
Q Consensus 524 rTG~lv~~L 532 (1313)
++|+.+-..
T Consensus 319 ~tG~~~W~~ 327 (488)
T cd00216 319 TTGKLISAR 327 (488)
T ss_pred CCCcEeeEe
Confidence 999987554
No 352
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=78.75 E-value=1.2e+02 Score=34.25 Aligned_cols=145 Identities=13% Similarity=0.147 Sum_probs=85.0
Q ss_pred EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEE
Q 000743 344 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 423 (1313)
Q Consensus 344 ~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVW 423 (1313)
.++.|+.+| +.++..+ ......+.. +...|..+...|. -+.++.-+ |+++.++
T Consensus 9 ~L~vGt~~G-l~~~~~~--------------~~~~~~~i~--~~~~I~ql~vl~~---------~~~llvLs-d~~l~~~ 61 (275)
T PF00780_consen 9 RLLVGTEDG-LYVYDLS--------------DPSKPTRIL--KLSSITQLSVLPE---------LNLLLVLS-DGQLYVY 61 (275)
T ss_pred EEEEEECCC-EEEEEec--------------CCccceeEe--ecceEEEEEEecc---------cCEEEEEc-CCccEEE
Confidence 699999999 7774331 011112222 2223888888752 14444443 5999999
Q ss_pred ECCCCceEEEE--------------eccCCCEEEEE-ECCCCCCCCCCCEEEEEeCCCeEEEEECCCC-----cEEEEec
Q 000743 424 DLGSGNLITVM--------------HHHVAPVRQII-LSPPQTEHPWSDCFLSVGEDFSVALASLETL-----RVERMFP 483 (1313)
Q Consensus 424 Dl~tg~~l~t~--------------~gH~~~V~sV~-fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~-----~~l~~l~ 483 (1313)
|+........- ......+...+ -... .+...+.+...++|.+|..... +..+.+.
T Consensus 62 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~-----~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~ 136 (275)
T PF00780_consen 62 DLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGH-----EGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS 136 (275)
T ss_pred EchhhccccccccccccccccccccccccCCeeEEeecccc-----ccceEEEEEECCEEEEEEEECCcccccceeEEEE
Confidence 98865433311 11233455544 1111 1344555566679998887653 3445555
Q ss_pred CCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEE
Q 000743 484 GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL 532 (1313)
Q Consensus 484 gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L 532 (1313)
-. ..+..++|. ++.++.|.. +...+.|+.++.....+
T Consensus 137 lp-~~~~~i~~~--~~~i~v~~~---------~~f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 137 LP-DPPSSIAFL--GNKICVGTS---------KGFYLIDLNTGSPSELL 173 (275)
T ss_pred cC-CCcEEEEEe--CCEEEEEeC---------CceEEEecCCCCceEEe
Confidence 33 578899998 567777654 47899999987765444
No 353
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.42 E-value=5.3 Score=52.73 Aligned_cols=90 Identities=11% Similarity=0.104 Sum_probs=66.6
Q ss_pred cEEEEEeCCCcEEEEECCCC-ceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC
Q 000743 409 EVLVSGSMDCSIRIWDLGSG-NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN 487 (1313)
Q Consensus 409 ~~LaSGS~DgtIrVWDl~tg-~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~ 487 (1313)
.+++.|+..|.|-..|.... .+++.=..-.++|++++|+-+ |..++.|-.+|-|.+||...++.++.+.-|..
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~d------g~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQD------GSLLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCC------CceeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 57888888888988887642 222222234679999999998 78999999999999999999999988877766
Q ss_pred CcEE---EEEcCCCCEEEEE
Q 000743 488 YPAK---VVWDCPRGYIACL 504 (1313)
Q Consensus 488 ~V~s---VafsPdg~~Latg 504 (1313)
+.+. +.+..++..++++
T Consensus 174 p~t~vi~v~~t~~nS~llt~ 193 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTS 193 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEc
Confidence 6543 4445555556653
No 354
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=77.47 E-value=3.4 Score=35.11 Aligned_cols=31 Identities=23% Similarity=0.362 Sum_probs=27.7
Q ss_pred CeeeecCCCceEEeeccccccCCceEEEEECcCcceE
Q 000743 1131 PMVSLNDTSTKLAVGDAIGDIKKASIRVYDMQSVTKI 1167 (1313)
Q Consensus 1131 p~Vsf~~~tqrlAVG~~~~~~~~g~i~iydl~t~~k~ 1167 (1313)
-.++||+..--||+|+. +|.|.||.+ +++|+
T Consensus 15 ~~~~w~P~mdLiA~~t~-----~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 15 SCMSWCPTMDLIALGTE-----DGEVLVYRL-NWQRI 45 (47)
T ss_pred EEEEECCCCCEEEEEEC-----CCeEEEEEC-CCcCc
Confidence 38999999999999999 999999999 67664
No 355
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=77.20 E-value=68 Score=40.75 Aligned_cols=247 Identities=18% Similarity=0.221 Sum_probs=128.4
Q ss_pred HHHHhhcccccCCCCCCCcHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhCCCCCCCCcCcccccccccccccCCCCccCc
Q 000743 804 AAFYTRNFAENFPDIKPPLLQLLVSFWQDESEHVRMAARSLFHCAASRAIPLPLCSPKGVADAKPVWSLSTTGDDEHANS 883 (1313)
Q Consensus 804 aa~~~~~Lpd~~~~~~~P~L~~La~~WqD~~~evR~AAr~L~~~~~~r~i~~~~~~~~~~~~~~~~ws~~~~~~~~~~~~ 883 (1313)
...+|..|......|-.|.|-.+-..-=|..++||+||..-.. ++.+..+.- +-+.++
T Consensus 199 ~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~k-ai~~~~~~~-----aVK~ll---------------- 256 (569)
T KOG1242|consen 199 FEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAK-AIMRCLSAY-----AVKLLL---------------- 256 (569)
T ss_pred HHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHH-HHHHhcCcc-----hhhHhh----------------
Confidence 3456667763344466666666666667999999999988887 677766653 222211
Q ss_pred ccccccccccccCCCCcccCCCchhhhhhhhhhhhccccceeecccCccccchhhhHHhhhhhhhhcCCCCChhHHHHHH
Q 000743 884 NVEKISANELASDMLPETQGNSLVEESDVLSWLESFEVQDWISCVGGTSQDAMTSHIIVAAALAIWYPSLVKPTLAMLVV 963 (1313)
Q Consensus 884 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~le~~~~q~~l~~ig~~~~~~~~~~i~~~~~la~~~~~~~~~~l~~~~~ 963 (1313)
|+.-..=+ +. .| +.+.+ ++-..+.++-..|..++..+. .+.
T Consensus 257 ---------------psll~~l~---~~--kW---rtK~a---------------slellg~m~~~ap~qLs~~lp-~ii 297 (569)
T KOG1242|consen 257 ---------------PSLLGSLL---EA--KW---RTKMA---------------SLELLGAMADCAPKQLSLCLP-DLI 297 (569)
T ss_pred ---------------hhhHHHHH---HH--hh---hhHHH---------------HHHHHHHHHHhchHHHHHHHh-Hhh
Confidence 10000000 00 13 11111 222233444333333333332 566
Q ss_pred HHHHHHHHccCcchHHHHHHHHHhhhhhccccccc-ccchhhhhchheeeecccCCCCCcCCCCCCcHHHHHHHHhhccc
Q 000743 964 QPLIKLVMATNEKYSSTAAELLAEGMESTWKTCIG-FEIPRLIGDIFFQIECVSNSSANLAGQHPAVPASIRETLVGILL 1042 (1313)
Q Consensus 964 ~~l~~ll~~~~~~~r~~AieLl~rGf~~~W~~~i~-~dv~~ll~~~~~~i~~~~~~~~~~~~~~~~~~~~ar~al~~~~~ 1042 (1313)
..|...|.+.+..+|.+|++-+-+=- + -+| +||.+++..+ +.|+.-+.. --..+-+.|...
T Consensus 298 P~lsevl~DT~~evr~a~~~~l~~~~-s----vidN~dI~~~ip~L---ld~l~dp~~--------~~~e~~~~L~~t-- 359 (569)
T KOG1242|consen 298 PVLSEVLWDTKPEVRKAGIETLLKFG-S----VIDNPDIQKIIPTL---LDALADPSC--------YTPECLDSLGAT-- 359 (569)
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHH-H----hhccHHHHHHHHHH---HHHhcCccc--------chHHHHHhhcce--
Confidence 77888888899999999999886544 2 344 4666644322 233322110 111233444221
Q ss_pred ccccccchhHHHHHHHHHhh-hccCCC-hhhhhhHHHHHH-HHh--cChhhHhhcHHHHHHHhhhccCCCCchhhhhhhh
Q 000743 1043 PSLAMADILGFLTVVESQIW-STASDS-PVHLVSIMTIIR-VVR--GSPRNVAQHLDKVVNFILQTMDPGNSVMRKTCLH 1117 (1313)
Q Consensus 1043 ~~ia~~~~~~fi~~i~~~i~-~~~~~~-~~~~~~l~~l~~-~i~--~~p~~~~~~l~~v~~~vl~~lDp~~~~~R~~~~~ 1117 (1313)
.-++..+++..- .|.-.+. ..+.++ ..+..+ ..++- +.+ ..|.++.++|+.++.-+=+.++--.|..| .
T Consensus 360 tFV~~V~~psLa-lmvpiL~R~l~eRst~~kr~t-~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR----~ 433 (569)
T KOG1242|consen 360 TFVAEVDAPSLA-LMVPILKRGLAERSTSIKRKT-AIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVR----A 433 (569)
T ss_pred eeeeeecchhHH-HHHHHHHHHHhhccchhhhhH-HHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHH----H
Confidence 113444544321 2222222 111111 222111 11111 222 57999999999998877666553388888 5
Q ss_pred hHHHHHHHHhhccCeeee
Q 000743 1118 TSMAALKEIVHVFPMVSL 1135 (1313)
Q Consensus 1118 ~~t~~l~~~v~~fp~Vsf 1135 (1313)
.+-++|..+.++--++.|
T Consensus 434 vaarAL~~l~e~~g~~~f 451 (569)
T KOG1242|consen 434 VAARALGALLERLGEVSF 451 (569)
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 666778888877777777
No 356
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=77.17 E-value=35 Score=40.17 Aligned_cols=91 Identities=13% Similarity=0.131 Sum_probs=65.0
Q ss_pred cEEEEEeCCCc-EEEEECCCCceEEEEeccCCCEE--EEEECCCCCCCCCCCEEEEEeCC-----CeEEEEECC-CCcEE
Q 000743 409 EVLVSGSMDCS-IRIWDLGSGNLITVMHHHVAPVR--QIILSPPQTEHPWSDCFLSVGED-----FSVALASLE-TLRVE 479 (1313)
Q Consensus 409 ~~LaSGS~Dgt-IrVWDl~tg~~l~t~~gH~~~V~--sV~fsPd~~~~~~g~~LaSgS~D-----gtV~LWDL~-t~~~l 479 (1313)
..++-+-.-|+ ..+||..+++..+.+....+.-. --.|+|+ |++|++.-.| |.|-+||.+ +.+.+
T Consensus 18 ~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~d------G~~LytTEnd~~~g~G~IgVyd~~~~~~ri 91 (305)
T PF07433_consen 18 EAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPD------GRLLYTTENDYETGRGVIGVYDAARGYRRI 91 (305)
T ss_pred eEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCC------CCEEEEeccccCCCcEEEEEEECcCCcEEE
Confidence 45555555553 56899999988776543222111 2468999 7888876554 789999998 66778
Q ss_pred EEecCCCCCcEEEEEcCCCCEEEEEe
Q 000743 480 RMFPGHPNYPAKVVWDCPRGYIACLC 505 (1313)
Q Consensus 480 ~~l~gH~~~V~sVafsPdg~~Latgs 505 (1313)
..+..|.-.+-.+.+.|+++.|+++-
T Consensus 92 ~E~~s~GIGPHel~l~pDG~tLvVAN 117 (305)
T PF07433_consen 92 GEFPSHGIGPHELLLMPDGETLVVAN 117 (305)
T ss_pred eEecCCCcChhhEEEcCCCCEEEEEc
Confidence 88888876777899999998887753
No 357
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=76.88 E-value=9.3 Score=45.43 Aligned_cols=101 Identities=13% Similarity=0.146 Sum_probs=48.5
Q ss_pred cEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeC----------CCeEEEEECCCCcEEEEe--cC-C
Q 000743 419 SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE----------DFSVALASLETLRVERMF--PG-H 485 (1313)
Q Consensus 419 tIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~----------DgtV~LWDL~t~~~l~~l--~g-H 485 (1313)
.|.+.|.++++.+..+.. +-.-.+..+|+ ++.+.+++. .-.|.+||..+..+...+ +. |
T Consensus 18 rv~viD~d~~k~lGmi~~--g~~~~~~~spd------gk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~ 89 (342)
T PF06433_consen 18 RVYVIDADSGKLLGMIDT--GFLGNVALSPD------GKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKP 89 (342)
T ss_dssp EEEEEETTTTEEEEEEEE--ESSEEEEE-TT------SSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-
T ss_pred eEEEEECCCCcEEEEeec--ccCCceeECCC------CCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcc
Confidence 566666666666555431 22223445666 444444321 234667777766655433 22 1
Q ss_pred CC----CcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEe
Q 000743 486 PN----YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 533 (1313)
Q Consensus 486 ~~----~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~ 533 (1313)
.. .....+++.+++++++-.... . .+|.|-|+..++.++++.
T Consensus 90 R~~~~~~~~~~~ls~dgk~~~V~N~TP----a--~SVtVVDl~~~kvv~ei~ 135 (342)
T PF06433_consen 90 RAQVVPYKNMFALSADGKFLYVQNFTP----A--TSVTVVDLAAKKVVGEID 135 (342)
T ss_dssp B--BS--GGGEEE-TTSSEEEEEEESS----S--EEEEEEETTTTEEEEEEE
T ss_pred hheecccccceEEccCCcEEEEEccCC----C--CeEEEEECCCCceeeeec
Confidence 11 123455666666665543321 1 456666666655555443
No 358
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=75.13 E-value=1.5e+02 Score=33.49 Aligned_cols=125 Identities=17% Similarity=0.149 Sum_probs=60.0
Q ss_pred EEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccC
Q 000743 329 VSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFN 408 (1313)
Q Consensus 329 Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~ 408 (1313)
|+.+..+++.. ++..-.|+.+.+++++.+....... ............-......|...+... ..++
T Consensus 38 I~ql~vl~~~~-----~llvLsd~~l~~~~L~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~f~~~~---~~~~---- 104 (275)
T PF00780_consen 38 ITQLSVLPELN-----LLLVLSDGQLYVYDLDSLEPVSTSA-PLAFPKSRSLPTKLPETKGVSFFAVNG---GHEG---- 104 (275)
T ss_pred EEEEEEecccC-----EEEEEcCCccEEEEchhhccccccc-cccccccccccccccccCCeeEEeecc---cccc----
Confidence 77776676665 3444467999997665433321000 000000000001112223344444111 1222
Q ss_pred cEEEEEeCCCcEEEEECCCC-----ceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCC
Q 000743 409 EVLVSGSMDCSIRIWDLGSG-----NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL 476 (1313)
Q Consensus 409 ~~LaSGS~DgtIrVWDl~tg-----~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~ 476 (1313)
...+.....++|.+|..... +..+.+. -.+.+.++.|.++ .++.+..+ ...+.|+.++
T Consensus 105 ~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~~--------~i~v~~~~-~f~~idl~~~ 167 (275)
T PF00780_consen 105 SRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLGN--------KICVGTSK-GFYLIDLNTG 167 (275)
T ss_pred ceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeCC--------EEEEEeCC-ceEEEecCCC
Confidence 33344445568888887653 4555555 4577888888854 34444333 3455565543
No 359
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=74.59 E-value=95 Score=38.92 Aligned_cols=119 Identities=11% Similarity=0.039 Sum_probs=75.1
Q ss_pred cEEEEEeCCCcEEEEECCCCceEEEEeccCCC--EEEEEECCCCCCCCCCCEEEEEe---------CCCeEEEEECCCCc
Q 000743 409 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAP--VRQIILSPPQTEHPWSDCFLSVG---------EDFSVALASLETLR 477 (1313)
Q Consensus 409 ~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~--V~sV~fsPd~~~~~~g~~LaSgS---------~DgtV~LWDL~t~~ 477 (1313)
..++.++.|+.|.-+|.++|+.+-++...... -..+.-+|.- .+..++.++ .++.+.-+|..+|+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v----~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~ 186 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTI----VKKLVIIGSSGAEFFACGVRGALRAYDVETGK 186 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEE----ECCEEEEeccccccccCCCCcEEEEEECCCCc
Confidence 57778889999999999999998777643221 0111112210 023344433 36789999999999
Q ss_pred EEEEecCCCC--------------------CcE-EEEEcCCCCEEEEEecCCCCC------------CCCCCEEEEEECC
Q 000743 478 VERMFPGHPN--------------------YPA-KVVWDCPRGYIACLCRDHSRT------------SDAVDVLFIWDVK 524 (1313)
Q Consensus 478 ~l~~l~gH~~--------------------~V~-sVafsPdg~~Latgs~DlsGs------------sD~DgtIrVWDlr 524 (1313)
.+..+..... .++ ..++++.+..++.++.| ++ .+.++.|+-.|.+
T Consensus 187 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~--g~~~~~~~~~~~~~~~~~~~l~Ald~~ 264 (488)
T cd00216 187 LLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGN--GSPWNWGGRRTPGDNLYTDSIVALDAD 264 (488)
T ss_pred eeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCC--CCCCccCCccCCCCCCceeeEEEEcCC
Confidence 8877654211 111 34556667778877655 31 1123589999999
Q ss_pred CCcEEEEEe
Q 000743 525 TGARERVLR 533 (1313)
Q Consensus 525 TG~lv~~L~ 533 (1313)
||+.+-.++
T Consensus 265 tG~~~W~~~ 273 (488)
T cd00216 265 TGKVKWFYQ 273 (488)
T ss_pred CCCEEEEee
Confidence 999887664
No 360
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=74.09 E-value=5.1 Score=49.30 Aligned_cols=70 Identities=19% Similarity=0.272 Sum_probs=53.4
Q ss_pred eeecCCCceEEeeccccccCCceEEEEECcCcceEEEEecCCCCCCCCCCCcccccceEEEEECCCCCeEEEEecCCceE
Q 000743 1133 VSLNDTSTKLAVGDAIGDIKKASIRVYDMQSVTKIKVLDASGPPGLPRESDSVATTVISALIFSPDGEGLVAFSEHGLMI 1212 (1313)
Q Consensus 1133 Vsf~~~tqrlAVG~~~~~~~~g~i~iydl~t~~k~~~l~~h~~~~~~~~~~~~~~~~i~a~~fs~dG~~l~~~s~~~~~~ 1212 (1313)
-+|++.++|||+-.. .+ -+-.|.+||+.+.++.+..++- +.-+.=+|||||+.||--|..++.=
T Consensus 243 P~fspDG~~l~f~~~-rd-g~~~iy~~dl~~~~~~~Lt~~~--------------gi~~~Ps~spdG~~ivf~Sdr~G~p 306 (425)
T COG0823 243 PAFSPDGSKLAFSSS-RD-GSPDIYLMDLDGKNLPRLTNGF--------------GINTSPSWSPDGSKIVFTSDRGGRP 306 (425)
T ss_pred ccCCCCCCEEEEEEC-CC-CCccEEEEcCCCCcceecccCC--------------ccccCccCCCCCCEEEEEeCCCCCc
Confidence 357788999999443 32 1345788999999887755552 2334678999999999999999999
Q ss_pred EEEEcC
Q 000743 1213 RWWSLG 1218 (1313)
Q Consensus 1213 ~~w~~~ 1218 (1313)
.||...
T Consensus 307 ~I~~~~ 312 (425)
T COG0823 307 QIYLYD 312 (425)
T ss_pred ceEEEC
Confidence 999883
No 361
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=72.49 E-value=35 Score=45.07 Aligned_cols=105 Identities=15% Similarity=0.152 Sum_probs=67.2
Q ss_pred CCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEE
Q 000743 342 PYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIR 421 (1313)
Q Consensus 342 P~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIr 421 (1313)
+...++|-.+..+.. ||+...+.. ..|. ..+.+ .....-.|++-. .+| +||.||.+|.||
T Consensus 542 ~e~tflGls~n~lfr--iDpR~~~~k--~v~~-----~~k~Y-~~~~~Fs~~aTt-----~~G-----~iavgs~~G~IR 601 (794)
T PF08553_consen 542 NEQTFLGLSDNSLFR--IDPRLSGNK--LVDS-----QSKQY-SSKNNFSCFATT-----EDG-----YIAVGSNKGDIR 601 (794)
T ss_pred CCceEEEECCCceEE--eccCCCCCc--eeec-----ccccc-ccCCCceEEEec-----CCc-----eEEEEeCCCcEE
Confidence 345778888887777 776543200 0010 01111 122334555543 344 899999999999
Q ss_pred EEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEEC
Q 000743 422 IWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASL 473 (1313)
Q Consensus 422 VWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL 473 (1313)
++|--..+....|.+-..+|..|..+.| |++++..+ +..+.|++.
T Consensus 602 Lyd~~g~~AKT~lp~lG~pI~~iDvt~D------GkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 602 LYDRLGKRAKTALPGLGDPIIGIDVTAD------GKWILATC-KTYLLLIDT 646 (794)
T ss_pred eecccchhhhhcCCCCCCCeeEEEecCC------CcEEEEee-cceEEEEEE
Confidence 9994333344456777899999999999 78777665 567888875
No 362
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=72.02 E-value=96 Score=40.19 Aligned_cols=95 Identities=22% Similarity=0.297 Sum_probs=66.8
Q ss_pred eCCCcEEEEECCCCceEEEEe-ccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECC---------CCcEEEE--e
Q 000743 415 SMDCSIRIWDLGSGNLITVMH-HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE---------TLRVERM--F 482 (1313)
Q Consensus 415 S~DgtIrVWDl~tg~~l~t~~-gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~---------t~~~l~~--l 482 (1313)
+.-.++.|||.+.+.....-. ...+.|..+.|... +.++.++++|-.+.|.+|.-. +..+++. +
T Consensus 48 ~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst----~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i 123 (631)
T PF12234_consen 48 SSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTST----PDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDI 123 (631)
T ss_pred CCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeec----CCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEe
Confidence 344578999999887544322 35788999999764 338999999999999999642 1123333 2
Q ss_pred cCCC-CCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEEC
Q 000743 483 PGHP-NYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 523 (1313)
Q Consensus 483 ~gH~-~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDl 523 (1313)
..|+ .+|.+..|.++|.+++..+ +.++|+|-
T Consensus 124 ~~~T~h~Igds~Wl~~G~LvV~sG----------Nqlfv~dk 155 (631)
T PF12234_consen 124 SSHTPHPIGDSIWLKDGTLVVGSG----------NQLFVFDK 155 (631)
T ss_pred ecCCCCCccceeEecCCeEEEEeC----------CEEEEECC
Confidence 3444 4788999999998776422 68999874
No 363
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=70.28 E-value=9.2 Score=30.40 Aligned_cols=29 Identities=17% Similarity=0.130 Sum_probs=23.0
Q ss_pred ccceEEEEECCCCCeEEEEecCC--ceEEEE
Q 000743 1187 TTVISALIFSPDGEGLVAFSEHG--LMIRWW 1215 (1313)
Q Consensus 1187 ~~~i~a~~fs~dG~~l~~~s~~~--~~~~~w 1215 (1313)
.....+-+||||||+|+=.|..+ +...+|
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 45678899999999999999888 666666
No 364
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=69.68 E-value=18 Score=46.24 Aligned_cols=102 Identities=15% Similarity=0.173 Sum_probs=68.5
Q ss_pred EEEEEEcCCcEEEEEeeccccCCCCCCccccCCceE-EEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEE
Q 000743 344 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVS-RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRI 422 (1313)
Q Consensus 344 ~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~-~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrV 422 (1313)
.++.|+..|.+.+ ++.-. ++. .....|-.+.+..+..|+ ++.+++.|+..+.|.+
T Consensus 47 ~l~~GsS~G~lyl--~~R~~-------------~~~~~~~~~~~~~~~~~~~vs~---------~e~lvAagt~~g~V~v 102 (726)
T KOG3621|consen 47 YLAMGSSAGSVYL--YNRHT-------------GEMRKLKNEGATGITCVRSVSS---------VEYLVAAGTASGRVSV 102 (726)
T ss_pred eEEEecccceEEE--EecCc-------------hhhhcccccCccceEEEEEecc---------hhHhhhhhcCCceEEe
Confidence 5999999999999 43211 111 111222333344444553 3467888888889999
Q ss_pred EECCCCce-----EEEE-eccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCC
Q 000743 423 WDLGSGNL-----ITVM-HHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET 475 (1313)
Q Consensus 423 WDl~tg~~-----l~t~-~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t 475 (1313)
+-+..+.+ +..+ +.|...|+++.|+++ +..+.+|..-|+|.+-.+..
T Consensus 103 ~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~------~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 103 FQLNKELPRDLDYVTPCDKSHKCRVTALEWSKN------GMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ehhhccCCCcceeeccccccCCceEEEEEeccc------ccEEeecCCCceEEEEEech
Confidence 88875432 1122 227789999999999 78999999999998887776
No 365
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=69.07 E-value=1e+02 Score=35.36 Aligned_cols=112 Identities=9% Similarity=0.008 Sum_probs=68.6
Q ss_pred EEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccC-CCEEEEEECCCCCCCCCCCEE
Q 000743 381 QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHV-APVRQIILSPPQTEHPWSDCF 459 (1313)
Q Consensus 381 ~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~-~~V~sV~fsPd~~~~~~g~~L 459 (1313)
+.+.|-...+.+++|+| |. +.+++....++.|...|. +|+.++++.-.. +..-.|++..+ +.++
T Consensus 15 ~~l~g~~~e~SGLTy~p-----d~---~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~------~~~v 79 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNP-----DT---GTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGN------GRYV 79 (248)
T ss_dssp EE-TT--S-EEEEEEET-----TT---TEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-ST------TEEE
T ss_pred eECCCccCCccccEEcC-----CC---CeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECC------CEEE
Confidence 45566666799999996 22 367777778888888886 588888876443 56788888766 4566
Q ss_pred EEEeCCCeEEEEECCCCc------EEEEec-----CCCCCcEEEEEcCCCCEEEEEecC
Q 000743 460 LSVGEDFSVALASLETLR------VERMFP-----GHPNYPAKVVWDCPRGYIACLCRD 507 (1313)
Q Consensus 460 aSgS~DgtV~LWDL~t~~------~l~~l~-----gH~~~V~sVafsPdg~~Latgs~D 507 (1313)
++--.++.+.++++.... ....+. .+...+..++|+|.++.|+++.+.
T Consensus 80 l~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~ 138 (248)
T PF06977_consen 80 LSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKER 138 (248)
T ss_dssp EEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEES
T ss_pred EEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCC
Confidence 655568999998884321 112221 234468899999998888877665
No 366
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=68.84 E-value=73 Score=36.25 Aligned_cols=92 Identities=10% Similarity=-0.014 Sum_probs=61.9
Q ss_pred CEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEE--CCCC-----cEEEEecCC----CCCcEEEEEcCCCCEEEEEecCC
Q 000743 440 PVRQIILSPPQTEHPWSDCFLSVGEDFSVALAS--LETL-----RVERMFPGH----PNYPAKVVWDCPRGYIACLCRDH 508 (1313)
Q Consensus 440 ~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWD--L~t~-----~~l~~l~gH----~~~V~sVafsPdg~~Latgs~Dl 508 (1313)
.-+.++|+.+. ..+...-+.+.+|.-|| ..+| +.+..++.. ...+-.++.+.+|+..++.-.-
T Consensus 159 IsNgl~Wd~d~-----K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng- 232 (310)
T KOG4499|consen 159 ISNGLAWDSDA-----KKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNG- 232 (310)
T ss_pred CCccccccccC-----cEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecC-
Confidence 34567777663 24566677888998888 5554 344444431 1234466677777655543322
Q ss_pred CCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEEee
Q 000743 509 SRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHF 544 (1313)
Q Consensus 509 sGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~~~ 544 (1313)
++|...|..||+.+.++.-.+..+++++|
T Consensus 233 -------~~V~~~dp~tGK~L~eiklPt~qitsccF 261 (310)
T KOG4499|consen 233 -------GTVQKVDPTTGKILLEIKLPTPQITSCCF 261 (310)
T ss_pred -------cEEEEECCCCCcEEEEEEcCCCceEEEEe
Confidence 89999999999999999988888888766
No 367
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=64.22 E-value=51 Score=40.78 Aligned_cols=130 Identities=19% Similarity=0.163 Sum_probs=73.4
Q ss_pred EEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEE--EEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCC
Q 000743 380 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIR--IWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSD 457 (1313)
Q Consensus 380 ~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIr--VWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~ 457 (1313)
+..+.||.. .-+|+ ||| ..++++...|+... +.|+.+++ +.++..-.+.-..=.|+|+ |+
T Consensus 233 i~~~~g~~~---~P~fs-----pDG---~~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spd------G~ 294 (425)
T COG0823 233 ILNFNGNNG---APAFS-----PDG---SKLAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPD------GS 294 (425)
T ss_pred eeccCCccC---CccCC-----CCC---CEEEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCC------CC
Confidence 344556543 33566 677 56777888888655 55665555 4445422222234456777 67
Q ss_pred EEEEEeC-CCe--EEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEe
Q 000743 458 CFLSVGE-DFS--VALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 533 (1313)
Q Consensus 458 ~LaSgS~-Dgt--V~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~ 533 (1313)
.++-.++ .|. |.++|.+.+.. ..+......-..-.|+|+|++|+..+.. +++-.|.+.|+.++.-++.+.
T Consensus 295 ~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~-----~g~~~i~~~~~~~~~~~~~lt 367 (425)
T COG0823 295 KIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSS-----GGQWDIDKNDLASGGKIRILT 367 (425)
T ss_pred EEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEecc-----CCceeeEEeccCCCCcEEEcc
Confidence 6665543 443 56667665554 3333332222377899999999875532 211237777777665455554
No 368
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=63.98 E-value=3.1e+02 Score=36.69 Aligned_cols=61 Identities=13% Similarity=0.105 Sum_probs=39.7
Q ss_pred CCeEEEEECCCCcEEEEecCCCCC---------cEEEEEcC-CCC---EEEEEecCCCCCCCCCCEEEEEECCCCcEEEE
Q 000743 465 DFSVALASLETLRVERMFPGHPNY---------PAKVVWDC-PRG---YIACLCRDHSRTSDAVDVLFIWDVKTGARERV 531 (1313)
Q Consensus 465 DgtV~LWDL~t~~~l~~l~gH~~~---------V~sVafsP-dg~---~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~ 531 (1313)
.++|.-.|.++|+....++...+. ..-+.+.- +|+ .++.+..+ |.+++.|-+||+.+..
T Consensus 413 ~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~--------G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 413 SSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQ--------GQIYVLDRRTGEPIVP 484 (764)
T ss_pred cceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCC--------CEEEEEECCCCCEEee
Confidence 356777889999988777542111 12222222 442 67776666 9999999999998765
Q ss_pred Ee
Q 000743 532 LR 533 (1313)
Q Consensus 532 L~ 533 (1313)
.+
T Consensus 485 ~~ 486 (764)
T TIGR03074 485 VE 486 (764)
T ss_pred ce
Confidence 43
No 369
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=63.75 E-value=20 Score=42.82 Aligned_cols=83 Identities=22% Similarity=0.294 Sum_probs=56.3
Q ss_pred CCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEE-EecC-------CC--
Q 000743 417 DCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVER-MFPG-------HP-- 486 (1313)
Q Consensus 417 DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~-~l~g-------H~-- 486 (1313)
.+.+.++|+.+++....... ...+....|+|+ |+.++-+. |+-+.++++.+++..+ +..| -.
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~------g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dw 93 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPP-PPKLQDAKWSPD------GKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDW 93 (353)
T ss_dssp EEEEEEEETTTTEEEESS-E-ETTBSEEEE-SS------STEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--H
T ss_pred ceeEEEEecCCCceEECcCC-ccccccceeecC------CCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccce
Confidence 35688999999765544433 567889999999 78888776 5789999987774443 2222 01
Q ss_pred -------CCcEEEEEcCCCCEEEEEecC
Q 000743 487 -------NYPAKVVWDCPRGYIACLCRD 507 (1313)
Q Consensus 487 -------~~V~sVafsPdg~~Latgs~D 507 (1313)
+.-..+-|+||+++|+..-.|
T Consensus 94 vyeEEv~~~~~~~~WSpd~~~la~~~~d 121 (353)
T PF00930_consen 94 VYEEEVFDRRSAVWWSPDSKYLAFLRFD 121 (353)
T ss_dssp HHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred eccccccccccceEECCCCCEEEEEEEC
Confidence 122578899999999987776
No 370
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=62.79 E-value=3.7e+02 Score=33.10 Aligned_cols=52 Identities=12% Similarity=0.077 Sum_probs=36.2
Q ss_pred CCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCC-CCceeEEeeec
Q 000743 487 NYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGT-ASHSMFDHFCK 546 (1313)
Q Consensus 487 ~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH-~a~Vi~~~~c~ 546 (1313)
+++..++.+|++++++.-..+ |.+.|....-.+....+.-. ........||-
T Consensus 217 ~~i~~iavSpng~~iAl~t~~--------g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG 269 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDS--------GNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCG 269 (410)
T ss_pred CCeEEEEECCCCCEEEEEECC--------CCEEEEECcccceeEEeecCcCCCCcEEEEEC
Confidence 578999999999999875544 88888876545555444433 33445666885
No 371
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=62.08 E-value=27 Score=33.86 Aligned_cols=50 Identities=24% Similarity=0.321 Sum_probs=34.6
Q ss_pred CceEEEEECcCcceEEEEecCCCCCCCCCCCcccccceEEEEECCCCCe-EEEEecCCceEEEEE
Q 000743 1153 KASIRVYDMQSVTKIKVLDASGPPGLPRESDSVATTVISALIFSPDGEG-LVAFSEHGLMIRWWS 1216 (1313)
Q Consensus 1153 ~g~i~iydl~t~~k~~~l~~h~~~~~~~~~~~~~~~~i~a~~fs~dG~~-l~~~s~~~~~~~~w~ 1216 (1313)
+|.+.-||.+|. +..||-.= -.--..|++||||.+ |++=...-...|.|-
T Consensus 36 ~GRll~ydp~t~-~~~vl~~~-------------L~fpNGVals~d~~~vlv~Et~~~Ri~rywl 86 (89)
T PF03088_consen 36 TGRLLRYDPSTK-ETTVLLDG-------------LYFPNGVALSPDESFVLVAETGRYRILRYWL 86 (89)
T ss_dssp -EEEEEEETTTT-EEEEEEEE-------------ESSEEEEEE-TTSSEEEEEEGGGTEEEEEES
T ss_pred CcCEEEEECCCC-eEEEehhC-------------CCccCeEEEcCCCCEEEEEeccCceEEEEEE
Confidence 899999999999 66555441 445689999999995 455555556667773
No 372
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=62.03 E-value=1.7e+02 Score=35.44 Aligned_cols=109 Identities=14% Similarity=0.153 Sum_probs=79.2
Q ss_pred CcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEe--CCCeEEEEECCCCcEEEEecCC
Q 000743 408 NEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG--EDFSVALASLETLRVERMFPGH 485 (1313)
Q Consensus 408 ~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS--~DgtV~LWDL~t~~~l~~l~gH 485 (1313)
.+.++....+..|.+-|..+.+..+.... ......+++.|++ +...++-+ .++++.+.|-.+++.......-
T Consensus 86 ~~vyv~~~~~~~v~vid~~~~~~~~~~~v-G~~P~~~~~~~~~-----~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG 159 (381)
T COG3391 86 NKVYVTTGDSNTVSVIDTATNTVLGSIPV-GLGPVGLAVDPDG-----KYVYVANAGNGNNTVSVIDAATNKVTATIPVG 159 (381)
T ss_pred CeEEEecCCCCeEEEEcCcccceeeEeee-ccCCceEEECCCC-----CEEEEEecccCCceEEEEeCCCCeEEEEEecC
Confidence 35677777789999999888777766542 2256788999984 24555555 4799999999988888775433
Q ss_pred CCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEE
Q 000743 486 PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 530 (1313)
Q Consensus 486 ~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~ 530 (1313)
. ....++++|++.++++...+ +++|.+.|..+....+
T Consensus 160 ~-~P~~~a~~p~g~~vyv~~~~-------~~~v~vi~~~~~~v~~ 196 (381)
T COG3391 160 N-TPTGVAVDPDGNKVYVTNSD-------DNTVSVIDTSGNSVVR 196 (381)
T ss_pred C-CcceEEECCCCCeEEEEecC-------CCeEEEEeCCCcceec
Confidence 2 23899999999988875532 4899999977655543
No 373
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=61.35 E-value=1.7e+02 Score=37.34 Aligned_cols=118 Identities=15% Similarity=0.182 Sum_probs=69.5
Q ss_pred ccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECC-----CCceEEEEeccCC---CE--EEEEECCCCCCCCCCC
Q 000743 388 GAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLG-----SGNLITVMHHHVA---PV--RQIILSPPQTEHPWSD 457 (1313)
Q Consensus 388 ~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~-----tg~~l~t~~gH~~---~V--~sV~fsPd~~~~~~g~ 457 (1313)
..|.++.|.|.. ..+..-|+..-..+.|.||-+. +++.+..-..+-+ +| ....|||. ..
T Consensus 57 EhV~GlsW~P~~-----~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk------~~ 125 (671)
T PF15390_consen 57 EHVHGLSWAPPC-----TADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPK------KA 125 (671)
T ss_pred ceeeeeeecCcc-----cCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCC------Cc
Confidence 349999999731 1223466677788899999976 2333333222211 11 34567776 34
Q ss_pred EEEEEeCCCeEEEEECCCC--cEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECC
Q 000743 458 CFLSVGEDFSVALASLETL--RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 524 (1313)
Q Consensus 458 ~LaSgS~DgtV~LWDL~t~--~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlr 524 (1313)
.++.-..+..-.+++++.. +....+.+ .+.|.|.+|.+||+.|+++- |++ =.-||||-.
T Consensus 126 iL~VLT~~dvSV~~sV~~d~srVkaDi~~-~G~IhCACWT~DG~RLVVAv----GSs---LHSyiWd~~ 186 (671)
T PF15390_consen 126 ILTVLTARDVSVLPSVHCDSSRVKADIKT-SGLIHCACWTKDGQRLVVAV----GSS---LHSYIWDSA 186 (671)
T ss_pred eEEEEecCceeEeeeeeeCCceEEEeccC-CceEEEEEecCcCCEEEEEe----CCe---EEEEEecCc
Confidence 4444333333345666533 34445544 46899999999999888753 222 356899853
No 374
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=60.54 E-value=69 Score=39.47 Aligned_cols=88 Identities=18% Similarity=0.208 Sum_probs=59.6
Q ss_pred EEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEE----cCC---------
Q 000743 431 ITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVW----DCP--------- 497 (1313)
Q Consensus 431 l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVaf----sPd--------- 497 (1313)
...|......+.++..+|. +++.+....=|.|.|+|+.++..++..+|-.+. .+.| .+.
T Consensus 300 r~~l~D~~R~~~~i~~sP~------~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA--qc~wi~~~~~~~~~~~~~~~ 371 (415)
T PF14655_consen 300 RFGLPDSKREGESICLSPS------GRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA--QCGWIEVPEEGDRDRSNSNS 371 (415)
T ss_pred EEeeccCCceEEEEEECCC------CCEEEEEcCCCcEEEEECCCChhhhhhccCccc--eEEEEEeecccccccccccc
Confidence 3345555567889999998 577777666689999999999888888876542 1111 111
Q ss_pred -------CCEEEE-EecCCCCCCCCCCEEEEEECCCCcEEEEEeC
Q 000743 498 -------RGYIAC-LCRDHSRTSDAVDVLFIWDVKTGARERVLRG 534 (1313)
Q Consensus 498 -------g~~Lat-gs~DlsGssD~DgtIrVWDlrTG~lv~~L~G 534 (1313)
..+|+. +-.- |.|-||++++|..+..++-
T Consensus 372 ~~~~~~~~l~LvIyaprR--------g~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 372 PKSSSRFALFLVIYAPRR--------GILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred cCCCCcceEEEEEEeccC--------CeEEEEecCCCCEEEEEEe
Confidence 113322 2222 8999999999998877653
No 375
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=59.31 E-value=1.6e+02 Score=37.54 Aligned_cols=60 Identities=12% Similarity=-0.066 Sum_probs=38.6
Q ss_pred CeEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeC
Q 000743 466 FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 534 (1313)
Q Consensus 466 gtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~G 534 (1313)
+.+.-+|+.+++.+...+........... -.+..++.+..| |.++.+|.+||+.+....-
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~-t~g~lvf~g~~~--------G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLA-TAGDLVFYGTLE--------GYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceE-ECCcEEEEECCC--------CeEEEEECCCCCEeEEEeC
Confidence 56788899999888766533211111111 144456655444 9999999999998876653
No 376
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=58.90 E-value=3.4e+02 Score=31.65 Aligned_cols=122 Identities=17% Similarity=0.080 Sum_probs=71.5
Q ss_pred CccEEEEEEeccccCCCCCccCcEEEEEeCCC--cEEEEECCCCceEEEEeccCC-CEEEEEECCCCCCCCCCCEEEEEe
Q 000743 387 TGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDC--SIRIWDLGSGNLITVMHHHVA-PVRQIILSPPQTEHPWSDCFLSVG 463 (1313)
Q Consensus 387 ~~~V~sLafsP~~s~pDGr~~~~~LaSGS~Dg--tIrVWDl~tg~~l~t~~gH~~-~V~sV~fsPd~~~~~~g~~LaSgS 463 (1313)
.....++.|. .|| .++-|.+.-| .|+.+|+.+|+.+....-... -=..++...+ +.+.-.=
T Consensus 44 ~aFTQGL~~~-----~~g----~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-------~l~qLTW 107 (264)
T PF05096_consen 44 TAFTQGLEFL-----DDG----TLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-------KLYQLTW 107 (264)
T ss_dssp T-EEEEEEEE-----ETT----EEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-------EEEEEES
T ss_pred cccCccEEec-----CCC----EEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-------EEEEEEe
Confidence 3456678884 233 6777877665 899999999987765432111 1112222222 2222233
Q ss_pred CCCeEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCC
Q 000743 464 EDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGT 535 (1313)
Q Consensus 464 ~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH 535 (1313)
.++...+||..+.+.+.+++-. +.=+.++. ++..|+. +|+...++.+|.++-+..+.++-.
T Consensus 108 k~~~~f~yd~~tl~~~~~~~y~-~EGWGLt~--dg~~Li~--------SDGS~~L~~~dP~~f~~~~~i~V~ 168 (264)
T PF05096_consen 108 KEGTGFVYDPNTLKKIGTFPYP-GEGWGLTS--DGKRLIM--------SDGSSRLYFLDPETFKEVRTIQVT 168 (264)
T ss_dssp SSSEEEEEETTTTEEEEEEE-S-SS--EEEE--CSSCEEE--------E-SSSEEEEE-TTT-SEEEEEE-E
T ss_pred cCCeEEEEccccceEEEEEecC-CcceEEEc--CCCEEEE--------ECCccceEEECCcccceEEEEEEE
Confidence 4678899999999999888643 46677774 3444443 122368999999988877776543
No 377
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=57.39 E-value=91 Score=36.51 Aligned_cols=112 Identities=14% Similarity=0.157 Sum_probs=68.9
Q ss_pred cCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCc-eEEEEec-cCCCEEEEEECCCCCCCCCCCEEEEE
Q 000743 385 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN-LITVMHH-HVAPVRQIILSPPQTEHPWSDCFLSV 462 (1313)
Q Consensus 385 GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~-~l~t~~g-H~~~V~sV~fsPd~~~~~~g~~LaSg 462 (1313)
...++|++++-. + ..|+.|. .+.|.+|++...+ ....-.. ....+.++... +++++.|
T Consensus 86 ~~~g~V~ai~~~------~-----~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--------~~~I~vg 145 (321)
T PF03178_consen 86 EVKGPVTAICSF------N-----GRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--------KNYILVG 145 (321)
T ss_dssp EESS-EEEEEEE------T-----TEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--------TTEEEEE
T ss_pred eecCcceEhhhh------C-----CEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--------ccEEEEE
Confidence 447889999854 1 3444433 5899999998877 4443332 23367777665 3578888
Q ss_pred eCCCeEEEEECCC-CcEEEEecC--CCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECC
Q 000743 463 GEDFSVALASLET-LRVERMFPG--HPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 524 (1313)
Q Consensus 463 S~DgtV~LWDL~t-~~~l~~l~g--H~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlr 524 (1313)
...+.+.++..+. .+.+..+.. ....++++.|-++++.++++..+ |.+.++...
T Consensus 146 D~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~--------gnl~~l~~~ 202 (321)
T PF03178_consen 146 DAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKD--------GNLFVLRYN 202 (321)
T ss_dssp ESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETT--------SEEEEEEE-
T ss_pred EcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCC--------CeEEEEEEC
Confidence 8888888775443 332333322 23357888888666777765444 999999764
No 378
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.41 E-value=47 Score=41.48 Aligned_cols=122 Identities=16% Similarity=0.106 Sum_probs=77.1
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCC-CCCCEEEEEeCCCeEEEEECCCCc--EEEEecCCC
Q 000743 410 VLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEH-PWSDCFLSVGEDFSVALASLETLR--VERMFPGHP 486 (1313)
Q Consensus 410 ~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~-~~g~~LaSgS~DgtV~LWDL~t~~--~l~~l~gH~ 486 (1313)
+|.++..-..++--|++.|+.+..+.-|.. |+-+.+.|+.... .....=+-|-+|+.|.-||.|-.. .+..-.+|.
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 566777778899999999999999997776 7778888874310 001112234568899999988332 233333442
Q ss_pred ----CCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEE-EEEeCCCCceeEE
Q 000743 487 ----NYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARE-RVLRGTASHSMFD 542 (1313)
Q Consensus 487 ----~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv-~~L~GH~a~Vi~~ 542 (1313)
....|.+-..+ .+|++|+.+ |.||+||- .+..- .-+.|-..+|..+
T Consensus 427 y~~k~nFsc~aTT~s-G~IvvgS~~--------GdIRLYdr-i~~~AKTAlPgLG~~I~hV 477 (644)
T KOG2395|consen 427 YSTKNNFSCFATTES-GYIVVGSLK--------GDIRLYDR-IGRRAKTALPGLGDAIKHV 477 (644)
T ss_pred cccccccceeeecCC-ceEEEeecC--------CcEEeehh-hhhhhhhcccccCCceeeE
Confidence 12345554444 478888877 99999995 55433 3344555555433
No 379
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=56.37 E-value=49 Score=40.05 Aligned_cols=75 Identities=19% Similarity=0.232 Sum_probs=50.1
Q ss_pred eeeecCCCceEEeeccccccCCceEEEEECcCcceEE-EEecCCCCCCCCCCCcccccceEEEEECCCCCeEEEEecC--
Q 000743 1132 MVSLNDTSTKLAVGDAIGDIKKASIRVYDMQSVTKIK-VLDASGPPGLPRESDSVATTVISALIFSPDGEGLVAFSEH-- 1208 (1313)
Q Consensus 1132 ~Vsf~~~tqrlAVG~~~~~~~~g~i~iydl~t~~k~~-~l~~h~~~~~~~~~~~~~~~~i~a~~fs~dG~~l~~~s~~-- 1208 (1313)
..++.+..+|||++-..|.=..-.|.|+|++|++.+. .|+. ..-+.++|++||+.+.--...
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~---------------~~~~~~~W~~d~~~~~y~~~~~~ 192 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN---------------PKFSSVSWSDDGKGFFYTRFDED 192 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE---------------EESEEEEECTTSSEEEEEECSTT
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc---------------cccceEEEeCCCCEEEEEEeCcc
Confidence 4678899999999965433223459999999994433 2333 112349999999998655533
Q ss_pred --------CceEEEEEcCcch
Q 000743 1209 --------GLMIRWWSLGSVW 1221 (1313)
Q Consensus 1209 --------~~~~~~w~~~~~~ 1221 (1313)
...|..|++|+..
T Consensus 193 ~~~~~~~~~~~v~~~~~gt~~ 213 (414)
T PF02897_consen 193 QRTSDSGYPRQVYRHKLGTPQ 213 (414)
T ss_dssp TSS-CCGCCEEEEEEETTS-G
T ss_pred cccccCCCCcEEEEEECCCCh
Confidence 4457888887663
No 380
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=54.71 E-value=43 Score=42.41 Aligned_cols=39 Identities=23% Similarity=0.362 Sum_probs=30.7
Q ss_pred cEEEEEcC----CCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCC
Q 000743 489 PAKVVWDC----PRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGT 535 (1313)
Q Consensus 489 V~sVafsP----dg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH 535 (1313)
+..+++++ +..++++.|.| +++|+||+++++++++..-.
T Consensus 217 ~~~~~~~~~~~~~~~~l~tl~~D--------~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 217 AASLAVSSSEINDDTFLFTLSRD--------HTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp EEEEEE-----ETTTEEEEEETT--------SEEEEEETTTTCEEEEEETT
T ss_pred cceEEEecceeCCCCEEEEEeCC--------CeEEEEECCCCeEEEEeccc
Confidence 45666666 77899999988 99999999999998776544
No 381
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=54.65 E-value=28 Score=29.29 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=28.9
Q ss_pred cceEEEEECCCCC--eEEEEecCCceEEEEEcCcch
Q 000743 1188 TVISALIFSPDGE--GLVAFSEHGLMIRWWSLGSVW 1221 (1313)
Q Consensus 1188 ~~i~a~~fs~dG~--~l~~~s~~~~~~~~w~~~~~~ 1221 (1313)
++|-++.|||+.- .|-+|+++-+.+-++.+-++|
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~f 36 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSNF 36 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccCc
Confidence 4688999998755 899999999999999986654
No 382
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=53.94 E-value=3.7e+02 Score=32.63 Aligned_cols=122 Identities=15% Similarity=0.210 Sum_probs=83.9
Q ss_pred cEEEEEEeccccCCCCCccCcEEEEEe--CCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCC-EEEEEeCC
Q 000743 389 AVLCLAAHRMVGTAKGWSFNEVLVSGS--MDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSD-CFLSVGED 465 (1313)
Q Consensus 389 ~V~sLafsP~~s~pDGr~~~~~LaSGS--~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~-~LaSgS~D 465 (1313)
.-..++++| +| ....++-. .++++-+-|..+++.+.+...-..+ ..+++.|+ |. .+++-..+
T Consensus 117 ~P~~~~~~~-----~~---~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~------g~~vyv~~~~~ 181 (381)
T COG3391 117 GPVGLAVDP-----DG---KYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPD------GNKVYVTNSDD 181 (381)
T ss_pred CCceEEECC-----CC---CEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCC------CCeEEEEecCC
Confidence 445677774 44 24444444 4789999999999888885533345 88999999 55 55555689
Q ss_pred CeEEEEECCCCcEEE-----EecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEE
Q 000743 466 FSVALASLETLRVER-----MFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV 531 (1313)
Q Consensus 466 gtV~LWDL~t~~~l~-----~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~ 531 (1313)
+++.+.|.......+ .... ......+.++|++.++.+.... +. |+++.+-|..++.....
T Consensus 182 ~~v~vi~~~~~~v~~~~~~~~~~~-~~~P~~i~v~~~g~~~yV~~~~---~~--~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 182 NTVSVIDTSGNSVVRGSVGSLVGV-GTGPAGIAVDPDGNRVYVANDG---SG--SNNVLKIDTATGNVTAT 246 (381)
T ss_pred CeEEEEeCCCcceecccccccccc-CCCCceEEECCCCCEEEEEecc---CC--CceEEEEeCCCceEEEe
Confidence 999999977655543 1211 1245789999999988776553 22 26999999988776554
No 383
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=53.91 E-value=1.6e+02 Score=34.80 Aligned_cols=108 Identities=9% Similarity=0.130 Sum_probs=69.8
Q ss_pred EEEECC-CCceEEEEeccCCCEEEEEECCCCCCCCCCCEE-EEEeCCCeEEEEECCC--C-----cEEEEecCCCCCcEE
Q 000743 421 RIWDLG-SGNLITVMHHHVAPVRQIILSPPQTEHPWSDCF-LSVGEDFSVALASLET--L-----RVERMFPGHPNYPAK 491 (1313)
Q Consensus 421 rVWDl~-tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~L-aSgS~DgtV~LWDL~t--~-----~~l~~l~gH~~~V~s 491 (1313)
.+|-+. .+..++.+..|-..-+.++|+|+ ++.+ ++=+..+.|.-|++.. + +....+..+.+.+-.
T Consensus 144 ~lyr~~p~g~~~~l~~~~~~~~NGla~SpD------g~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG 217 (307)
T COG3386 144 SLYRVDPDGGVVRLLDDDLTIPNGLAFSPD------GKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDG 217 (307)
T ss_pred eEEEEcCCCCEEEeecCcEEecCceEECCC------CCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCc
Confidence 345444 45666666666666789999999 4444 4444457787777652 1 112233344566778
Q ss_pred EEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeCCCCceeEE
Q 000743 492 VVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFD 542 (1313)
Q Consensus 492 VafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~GH~a~Vi~~ 542 (1313)
++.+.+|.+.+++..+ .+.|.+|+.. |+++..+.-....+.+.
T Consensus 218 ~~vDadG~lw~~a~~~-------g~~v~~~~pd-G~l~~~i~lP~~~~t~~ 260 (307)
T COG3386 218 MAVDADGNLWVAAVWG-------GGRVVRFNPD-GKLLGEIKLPVKRPTNP 260 (307)
T ss_pred eEEeCCCCEEEecccC-------CceEEEECCC-CcEEEEEECCCCCCccc
Confidence 8889999877643221 1389999987 99999988776555443
No 384
>PTZ00118 40S ribosomal protein S4; Provisional
Probab=53.86 E-value=62 Score=37.33 Aligned_cols=102 Identities=25% Similarity=0.353 Sum_probs=62.9
Q ss_pred ccceEEEEeeccccceeEEEEEeccCCeEEEEcccCCCcCccCCCCccccccccceeeecccccccceEEEEeecCcEEE
Q 000743 32 PWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIA 111 (1313)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (1313)
|.-||||+..+. .+.++=++-|-.||+.++||.++ |....|+|=- .--...+|..--...||.-|.
T Consensus 83 PvG~mDVIsI~k-t~e~yRvl~D~kGr~~l~~I~~e-----eA~~KLcKV~--------~k~~~~gg~~~l~~hDGrni~ 148 (262)
T PTZ00118 83 PVGFMDVVSLTK-TNEYFRLLYDTKGRFVPHKITNE-----EAKYKLCRVK--------KTFLGPKEVSIAVTHDGRTIR 148 (262)
T ss_pred CCceeEEEEEcC-CCCeEEEEECCCccEEEEEcCHH-----HhcceEEEEe--------EEEECCCCeEEEEecCcceec
Confidence 667999999844 45677788899999999999987 4444566541 111233444444456666544
Q ss_pred EE-----EeceeEEEeccCCceeeEEeecccceeecCCCcceeEEeeEEE
Q 000743 112 LV-----LKDHCIFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFL 156 (1313)
Q Consensus 112 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 156 (1313)
.- ..+.+++.+ .++.+..-+-|-..-+| .+.||.=+
T Consensus 149 ~~d~~ik~~Dtv~i~l-~~~kI~~~ikfe~G~l~--------~vtgG~n~ 189 (262)
T PTZ00118 149 YVHPDVKVGDSLRLDL-ETGKVLEFLKFEVGNLV--------MITGGHNV 189 (262)
T ss_pred cCCCcccCCCEEEEEC-CCCceeeEEecCCCCEE--------EEECCeec
Confidence 31 344555554 45556666666555555 45555554
No 385
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=52.55 E-value=16 Score=43.46 Aligned_cols=81 Identities=17% Similarity=0.248 Sum_probs=54.3
Q ss_pred ccCeeeecCCCceEEeeccccccCCceEEEEECcCcceEEEEecCCCC----CCCC---CCCcccccceEEEEECCCCCe
Q 000743 1129 VFPMVSLNDTSTKLAVGDAIGDIKKASIRVYDMQSVTKIKVLDASGPP----GLPR---ESDSVATTVISALIFSPDGEG 1201 (1313)
Q Consensus 1129 ~fp~Vsf~~~tqrlAVG~~~~~~~~g~i~iydl~t~~k~~~l~~h~~~----~~~~---~~~~~~~~~i~a~~fs~dG~~ 1201 (1313)
..-...+++.+++||... ++.|.++|+.++...++.. -|.+ |.|. .-|.... =.|+-|||||++
T Consensus 44 ~~~~~~~sP~g~~~~~v~------~~nly~~~~~~~~~~~lT~-dg~~~i~nG~~dwvyeEEv~~~--~~~~~WSpd~~~ 114 (353)
T PF00930_consen 44 KLQDAKWSPDGKYIAFVR------DNNLYLRDLATGQETQLTT-DGEPGIYNGVPDWVYEEEVFDR--RSAVWWSPDSKY 114 (353)
T ss_dssp TBSEEEE-SSSTEEEEEE------TTEEEEESSTTSEEEESES---TTTEEESB--HHHHHHTSSS--SBSEEE-TTSSE
T ss_pred ccccceeecCCCeeEEEe------cCceEEEECCCCCeEEecc-ccceeEEcCccceecccccccc--ccceEECCCCCE
Confidence 455678899999999954 7789999999995555443 3322 3443 1122222 368999999999
Q ss_pred EEEEecCCceEEEEEcC
Q 000743 1202 LVAFSEHGLMIRWWSLG 1218 (1313)
Q Consensus 1202 l~~~s~~~~~~~~w~~~ 1218 (1313)
||.+..++..++.+.+.
T Consensus 115 la~~~~d~~~v~~~~~~ 131 (353)
T PF00930_consen 115 LAFLRFDEREVPEYPLP 131 (353)
T ss_dssp EEEEEEE-TTS-EEEEE
T ss_pred EEEEEECCcCCceEEee
Confidence 99999999999999883
No 386
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=51.99 E-value=1.3e+02 Score=37.22 Aligned_cols=101 Identities=9% Similarity=0.062 Sum_probs=55.3
Q ss_pred CCCcEEEEECCCCceEEEEeccC--CCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEEC-CCCc----EEEEecCC---
Q 000743 416 MDCSIRIWDLGSGNLITVMHHHV--APVRQIILSPPQTEHPWSDCFLSVGEDFSVALASL-ETLR----VERMFPGH--- 485 (1313)
Q Consensus 416 ~DgtIrVWDl~tg~~l~t~~gH~--~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL-~t~~----~l~~l~gH--- 485 (1313)
.-.++.+||+.+.+.++++.--. ..+..|.|..+- ....-|+.+.-..+|-.|-- +.++ .+-.++.-
T Consensus 220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P---~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~ 296 (461)
T PF05694_consen 220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDP---DANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVE 296 (461)
T ss_dssp S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SST---T--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--
T ss_pred ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCC---CccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccC
Confidence 34789999999999999987432 235567776541 11345666666666655543 3331 12222210
Q ss_pred --------------CCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCC
Q 000743 486 --------------PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 526 (1313)
Q Consensus 486 --------------~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG 526 (1313)
..-|+.+..+.|++||...|-- +|.||.||+...
T Consensus 297 ~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~-------~GdvrqYDISDP 344 (461)
T PF05694_consen 297 GWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWL-------HGDVRQYDISDP 344 (461)
T ss_dssp SS---GGGGGG-EE------EEE-TTS-EEEEEETT-------TTEEEEEE-SST
T ss_pred cccccccccccccCCCceEeEEEccCCCEEEEEccc-------CCcEEEEecCCC
Confidence 2346899999999999987764 499999999763
No 387
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=51.38 E-value=72 Score=35.83 Aligned_cols=63 Identities=8% Similarity=-0.008 Sum_probs=45.6
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEe-------c-------CCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEE
Q 000743 456 SDCFLSVGEDFSVALASLETLRVERMF-------P-------GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIW 521 (1313)
Q Consensus 456 g~~LaSgS~DgtV~LWDL~t~~~l~~l-------~-------gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVW 521 (1313)
++++++...+|.+.+||+.+++++..- . .....|..+.++.+|.-+++-+ + |..|.|
T Consensus 22 ~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-n--------g~~y~y 92 (219)
T PF07569_consen 22 GSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-N--------GDSYSY 92 (219)
T ss_pred CCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-C--------CCEEEe
Confidence 578999999999999999998765422 1 2334677888888887766533 2 677888
Q ss_pred ECCCCc
Q 000743 522 DVKTGA 527 (1313)
Q Consensus 522 DlrTG~ 527 (1313)
|..=+.
T Consensus 93 ~~~L~~ 98 (219)
T PF07569_consen 93 SPDLGC 98 (219)
T ss_pred ccccce
Confidence 865443
No 388
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=50.34 E-value=2.6e+02 Score=37.41 Aligned_cols=124 Identities=12% Similarity=0.034 Sum_probs=74.9
Q ss_pred cEEEEEeCCCcEEEEECCCCceEEEEeccCCC--------EEEEEECCC--CC--------CCCCCCEEEEEeCCCeEEE
Q 000743 409 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAP--------VRQIILSPP--QT--------EHPWSDCFLSVGEDFSVAL 470 (1313)
Q Consensus 409 ~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~--------V~sV~fsPd--~~--------~~~~g~~LaSgS~DgtV~L 470 (1313)
..++.++.++.|.-.|..+|+.+-++...... .+.+.+... .. -...+..++.++.|+.+.-
T Consensus 195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA 274 (764)
T TIGR03074 195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA 274 (764)
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence 57777888999999999999988877643221 122333211 00 0011357778888999999
Q ss_pred EECCCCcEEEEecCCCCCcE-------------EEEEcC--CCCEEEEEecC--CCCCCCCCCEEEEEECCCCcEEEEEe
Q 000743 471 ASLETLRVERMFPGHPNYPA-------------KVVWDC--PRGYIACLCRD--HSRTSDAVDVLFIWDVKTGARERVLR 533 (1313)
Q Consensus 471 WDL~t~~~l~~l~gH~~~V~-------------sVafsP--dg~~Latgs~D--lsGssD~DgtIrVWDlrTG~lv~~L~ 533 (1313)
.|.++|+.+..+... +.|. .+.-.| .+..+++|+.- --+....+|.|+-+|.+||+++-.+.
T Consensus 275 LDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 275 LDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred EECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 999999998776421 1110 111112 24466666531 00000114899999999999986664
No 389
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=50.25 E-value=1.7e+02 Score=33.39 Aligned_cols=90 Identities=8% Similarity=0.069 Sum_probs=59.6
Q ss_pred CcEEEEEeCCCcEEEEE--CCCCce-----EEEEecc---CC-CEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCC
Q 000743 408 NEVLVSGSMDCSIRIWD--LGSGNL-----ITVMHHH---VA-PVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL 476 (1313)
Q Consensus 408 ~~~LaSGS~DgtIrVWD--l~tg~~-----l~t~~gH---~~-~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~ 476 (1313)
..+.+.-|.+.+|.-|| ..+|.. +..++.. .. .--.+++.-+ |++++++=.-++|...|..+|
T Consensus 170 K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~e------G~L~Va~~ng~~V~~~dp~tG 243 (310)
T KOG4499|consen 170 KKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTE------GNLYVATFNGGTVQKVDPTTG 243 (310)
T ss_pred cEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccC------CcEEEEEecCcEEEEECCCCC
Confidence 45677778888888888 555542 2222210 00 1112233333 788888888899999999999
Q ss_pred cEEEEecCCCCCcEEEEEcCC-CCEEEE
Q 000743 477 RVERMFPGHPNYPAKVVWDCP-RGYIAC 503 (1313)
Q Consensus 477 ~~l~~l~gH~~~V~sVafsPd-g~~Lat 503 (1313)
+.+..+.-.+..+++++|-.. -+.+++
T Consensus 244 K~L~eiklPt~qitsccFgGkn~d~~yv 271 (310)
T KOG4499|consen 244 KILLEIKLPTPQITSCCFGGKNLDILYV 271 (310)
T ss_pred cEEEEEEcCCCceEEEEecCCCccEEEE
Confidence 999998888889999999543 234444
No 390
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=50.09 E-value=58 Score=38.99 Aligned_cols=60 Identities=17% Similarity=0.127 Sum_probs=43.3
Q ss_pred eEEEEECCCCcEEEEecCCCCCcEEEEEcCCCC-EEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeC
Q 000743 467 SVALASLETLRVERMFPGHPNYPAKVVWDCPRG-YIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 534 (1313)
Q Consensus 467 tV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~-~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~G 534 (1313)
.|-++|+.+++.+..++.- .++.++..+.+.+ +|++.+.. ++.+.+||..||++++++.+
T Consensus 270 eVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~-------~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAG-------DGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEEETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETT-------TTEEEEEETTT--EEEEE--
T ss_pred EEEEEECCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCC-------CCeEEEEeCcCCcEEeehhc
Confidence 4778899999999888742 2577899988776 66544331 38999999999999999874
No 391
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=47.48 E-value=2.2e+02 Score=37.73 Aligned_cols=72 Identities=21% Similarity=0.237 Sum_probs=47.3
Q ss_pred CEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCC----------CcE---EEEe--------cCCCCCcEEEEEcCCC
Q 000743 440 PVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET----------LRV---ERMF--------PGHPNYPAKVVWDCPR 498 (1313)
Q Consensus 440 ~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t----------~~~---l~~l--------~gH~~~V~sVafsPdg 498 (1313)
.|..|.++|+ |+.++-.|..+. .|..+.. ++. .+++ ..+...|..+.|||.+
T Consensus 86 ~v~~i~~n~~------g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s 158 (717)
T PF10168_consen 86 EVHQISLNPT------GSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWS 158 (717)
T ss_pred eEEEEEECCC------CCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCC
Confidence 5888999998 787877776554 4433321 111 1111 1233468899999974
Q ss_pred ---CEEEEEecCCCCCCCCCCEEEEEECCCC
Q 000743 499 ---GYIACLCRDHSRTSDAVDVLFIWDVKTG 526 (1313)
Q Consensus 499 ---~~Latgs~DlsGssD~DgtIrVWDlrTG 526 (1313)
..|++-..| +++|+||+...
T Consensus 159 ~~~~~l~vLtsd--------n~lR~y~~~~~ 181 (717)
T PF10168_consen 159 ESDSHLVVLTSD--------NTLRLYDISDP 181 (717)
T ss_pred CCCCeEEEEecC--------CEEEEEecCCC
Confidence 688876655 99999999763
No 392
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=46.56 E-value=2.5e+02 Score=33.26 Aligned_cols=112 Identities=9% Similarity=0.017 Sum_probs=68.8
Q ss_pred ceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCC--Cce-----EEEEeccCCCEEEEEECCC
Q 000743 377 HVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS--GNL-----ITVMHHHVAPVRQIILSPP 449 (1313)
Q Consensus 377 g~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~t--g~~-----l~t~~gH~~~V~sV~fsPd 449 (1313)
+...+.+.+|-..-+.|+|+ ||| ..++++=+..+.|.-+++.. +.. ...+..+.+..-.++...+
T Consensus 152 g~~~~l~~~~~~~~NGla~S-----pDg---~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDad 223 (307)
T COG3386 152 GGVVRLLDDDLTIPNGLAFS-----PDG---KTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDAD 223 (307)
T ss_pred CCEEEeecCcEEecCceEEC-----CCC---CEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCC
Confidence 34455556665666789998 466 34555555667888887752 211 1112223344455555555
Q ss_pred CCCCCCCCEEEEEeCCC-eEEEEECCCCcEEEEecCCCCCcEEEEEcC-CCCEEEE
Q 000743 450 QTEHPWSDCFLSVGEDF-SVALASLETLRVERMFPGHPNYPAKVVWDC-PRGYIAC 503 (1313)
Q Consensus 450 ~~~~~~g~~LaSgS~Dg-tV~LWDL~t~~~l~~l~gH~~~V~sVafsP-dg~~Lat 503 (1313)
|++.+++-.++ .|..|+.+ ++.+..+.-+...+++++|-. +.+.|++
T Consensus 224 ------G~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~i 272 (307)
T COG3386 224 ------GNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYI 272 (307)
T ss_pred ------CCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEE
Confidence 56555555554 89999988 999888877766788888844 3344443
No 393
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=46.02 E-value=71 Score=26.98 Aligned_cols=34 Identities=18% Similarity=0.127 Sum_probs=26.0
Q ss_pred CCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCC
Q 000743 439 APVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET 475 (1313)
Q Consensus 439 ~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t 475 (1313)
+.|+++.|+|+.. ..++++-+-.-+.|.++|+++
T Consensus 1 GAvR~~kFsP~~~---~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPG---GNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCC---cccEEEEEccCCeEEEEEccc
Confidence 4689999998731 015777777778999999995
No 394
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=45.95 E-value=68 Score=40.60 Aligned_cols=44 Identities=14% Similarity=0.104 Sum_probs=29.9
Q ss_pred CEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC
Q 000743 440 PVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGH 485 (1313)
Q Consensus 440 ~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH 485 (1313)
.+..+++++... ....++++.+.|+++|+||+.+++++.+..-.
T Consensus 216 ~~~~~~~~~~~~--~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 216 VAASLAVSSSEI--NDDTFLFTLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp -EEEEEE-------ETTTEEEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred ccceEEEeccee--CCCCEEEEEeCCCeEEEEECCCCeEEEEeccc
Confidence 456666666100 00478999999999999999999998776443
No 395
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=44.61 E-value=68 Score=35.42 Aligned_cols=149 Identities=13% Similarity=0.147 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHccCcchHHHHHHHHHhhhhhcccccccccchhhhhchheeeecccCCCCCcCCCCCCcHHHHHHHHhhc
Q 000743 961 LVVQPLIKLVMATNEKYSSTAAELLAEGMESTWKTCIGFEIPRLIGDIFFQIECVSNSSANLAGQHPAVPASIRETLVGI 1040 (1313)
Q Consensus 961 ~~~~~l~~ll~~~~~~~r~~AieLl~rGf~~~W~~~i~~dv~~ll~~~~~~i~~~~~~~~~~~~~~~~~~~~ar~al~~~ 1040 (1313)
.+...|...+.+.++.+..+|..++++=+. .=+..+++.+..++.-++. .. +. ....+...|..+|
T Consensus 53 ~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~-~l~~~~~~~~~~~l~~Ll~---~~-~~------~~~~i~~~a~~~L--- 118 (228)
T PF12348_consen 53 QLLDAIIKQLSDLRSKVSKTACQLLSDLAR-QLGSHFEPYADILLPPLLK---KL-GD------SKKFIREAANNAL--- 118 (228)
T ss_dssp ---HHHHH-S-HH---HHHHHHHHHHHHHH-HHGGGGHHHHHHHHHHHHH---GG-G---------HHHHHHHHHHH---
T ss_pred HhHHHHHHHHhhhHHHHHHHHHHHHHHHHH-HHhHhHHHHHHHHHHHHHH---HH-cc------ccHHHHHHHHHHH---
Confidence 444666677777788888888887765542 2222232111112221111 11 10 1134567777777
Q ss_pred ccccccccch--hHH-HHHHHHHhhhccCCChhh-hhhHHHHHHHHhcCh---hhHhh--cHHHHHHHhhhccCCCCchh
Q 000743 1041 LLPSLAMADI--LGF-LTVVESQIWSTASDSPVH-LVSIMTIIRVVRGSP---RNVAQ--HLDKVVNFILQTMDPGNSVM 1111 (1313)
Q Consensus 1041 ~~~~ia~~~~--~~f-i~~i~~~i~~~~~~~~~~-~~~l~~l~~~i~~~p---~~~~~--~l~~v~~~vl~~lDp~~~~~ 1111 (1313)
..|...-+ +.. ...+..- ....++.- ...+..+..++++.| ..+.. .++.++..+.++|.=.++..
T Consensus 119 --~~i~~~~~~~~~~~~~~l~~~---~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~V 193 (228)
T PF12348_consen 119 --DAIIESCSYSPKILLEILSQG---LKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEV 193 (228)
T ss_dssp --HHHHTTS-H--HHHHHHHHHH---TT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHH
T ss_pred --HHHHHHCCcHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHH
Confidence 34444333 333 2222222 12333433 234444556888887 33333 36889999999998888889
Q ss_pred hhhhhhhHHHHHHHHhhccCe
Q 000743 1112 RKTCLHTSMAALKEIVHVFPM 1132 (1313)
Q Consensus 1112 R~~~~~~~t~~l~~~v~~fp~ 1132 (1313)
| +.|-.++..+.+.||.
T Consensus 194 R----~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 194 R----EAARECLWALYSHFPE 210 (228)
T ss_dssp H----HHHHHHHHHHHHHH-H
T ss_pred H----HHHHHHHHHHHHHCCH
Confidence 9 4555666666666664
No 396
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=43.71 E-value=1.4e+02 Score=39.20 Aligned_cols=102 Identities=10% Similarity=0.012 Sum_probs=65.2
Q ss_pred cCcEEEEEeCCCcEEEEECCC-------C-------------ceEEEEeccCCCEEEEEEC--CCCCCCCCCCEEEEEeC
Q 000743 407 FNEVLVSGSMDCSIRIWDLGS-------G-------------NLITVMHHHVAPVRQIILS--PPQTEHPWSDCFLSVGE 464 (1313)
Q Consensus 407 ~~~~LaSGS~DgtIrVWDl~t-------g-------------~~l~t~~gH~~~V~sV~fs--Pd~~~~~~g~~LaSgS~ 464 (1313)
..+.|+.+.+||.|.+|.+++ . ++...+. ....+++++++ .. .++||.++.
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~------~rlIAVSsN 185 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKK------SRLIAVSSN 185 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCc------ceEEEEecC
Confidence 468999999999999997631 0 1223333 34478999998 44 467888877
Q ss_pred CCeEEEEECCCC--cE-EEEecCCCCCcEEEEEcCCC-----C-EEEEEecCCCCCCCCCCEEEEEEC
Q 000743 465 DFSVALASLETL--RV-ERMFPGHPNYPAKVVWDCPR-----G-YIACLCRDHSRTSDAVDVLFIWDV 523 (1313)
Q Consensus 465 DgtV~LWDL~t~--~~-l~~l~gH~~~V~sVafsPdg-----~-~Latgs~DlsGssD~DgtIrVWDl 523 (1313)
-..|.||-.... +. ...-..|..-|-+|+|-++. . ++++++-. |.+.+|++
T Consensus 186 s~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~--------G~v~~~~I 245 (717)
T PF08728_consen 186 SQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDIS--------GEVWTFKI 245 (717)
T ss_pred CceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEecc--------CcEEEEEE
Confidence 788888765432 11 11111244568899997654 1 45544433 88888887
No 397
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=42.54 E-value=72 Score=39.71 Aligned_cols=79 Identities=19% Similarity=0.198 Sum_probs=44.2
Q ss_pred cEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCC-----------c
Q 000743 409 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL-----------R 477 (1313)
Q Consensus 409 ~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~-----------~ 477 (1313)
.+|...+.+ .|.+||+.+++.++++... +|..|.|+++ |.+++-.+.| ++.+++.+.. .
T Consensus 118 ~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~------g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~ 187 (443)
T PF04053_consen 118 NLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDD------GELVALVTKD-SIYILKYNLEAVAAIPEEGVED 187 (443)
T ss_dssp SSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TT------SSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GG
T ss_pred cEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECC------CCEEEEEeCC-eEEEEEecchhcccccccCchh
Confidence 455555444 8999999999999999733 4999999999 6777777654 6666664322 0
Q ss_pred EEEEecCCCCCcEEEEEcCC
Q 000743 478 VERMFPGHPNYPAKVVWDCP 497 (1313)
Q Consensus 478 ~l~~l~gH~~~V~sVafsPd 497 (1313)
....+..-...|.+.+|..+
T Consensus 188 ~f~~~~E~~~~IkSg~W~~d 207 (443)
T PF04053_consen 188 AFELIHEISERIKSGCWVED 207 (443)
T ss_dssp GEEEEEEE-S--SEEEEETT
T ss_pred ceEEEEEecceeEEEEEEcC
Confidence 22222221346777777655
No 398
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.44 E-value=1.1e+02 Score=41.45 Aligned_cols=101 Identities=16% Similarity=0.092 Sum_probs=64.9
Q ss_pred cEEEEEeCCCcEEEEECCCCce-----EEEEecc------CCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCc
Q 000743 409 EVLVSGSMDCSIRIWDLGSGNL-----ITVMHHH------VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR 477 (1313)
Q Consensus 409 ~~LaSGS~DgtIrVWDl~tg~~-----l~t~~gH------~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~ 477 (1313)
..++..+.+-.|..+|+++... ..-|+.| ..-+.++.|+|.- -...+....|+.|++..+....
T Consensus 115 s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~v-----p~n~av~l~dlsl~V~~~~~~~ 189 (1405)
T KOG3630|consen 115 SVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLV-----PLNSAVDLSDLSLRVKSTKQLA 189 (1405)
T ss_pred EEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCc-----cchhhhhccccchhhhhhhhhh
Confidence 4555666677899999985421 1112222 2335577788762 1345666778998888765332
Q ss_pred -EEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEEC
Q 000743 478 -VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 523 (1313)
Q Consensus 478 -~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDl 523 (1313)
.+..++ -....++++|+|.|..++.|-.. |++.-|..
T Consensus 190 ~~v~s~p-~t~~~Tav~WSprGKQl~iG~nn--------Gt~vQy~P 227 (1405)
T KOG3630|consen 190 QNVTSFP-VTNSQTAVLWSPRGKQLFIGRNN--------GTEVQYEP 227 (1405)
T ss_pred hhhcccC-cccceeeEEeccccceeeEecCC--------CeEEEeec
Confidence 223332 23457899999999999987665 89888864
No 399
>COG1471 RPS4A Ribosomal protein S4E [Translation, ribosomal structure and biogenesis]
Probab=42.06 E-value=34 Score=38.54 Aligned_cols=35 Identities=40% Similarity=0.544 Sum_probs=28.7
Q ss_pred ccceEEEEeeccccceeEEEEEeccCCeEEEEcccC
Q 000743 32 PWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKE 67 (1313)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (1313)
|.-|||||....-+|.+- ++-|..||+-+.||++|
T Consensus 82 PVGlmDVisip~tgE~yR-vl~d~~grl~l~~is~E 116 (241)
T COG1471 82 PVGLMDVISIPKTGEHYR-VLPDEKGRLVLHPISAE 116 (241)
T ss_pred CcceEEEEEECCCCceEE-EEecCCccEEEEecChh
Confidence 566999999976666554 56699999999999977
No 400
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=41.98 E-value=79 Score=35.47 Aligned_cols=84 Identities=19% Similarity=0.340 Sum_probs=53.6
Q ss_pred CeeeecCCCceEEeeccccccCCceEEEEECcCcceEEEEecCCCCCCCC-C----CCcccccceEEEEECCCCCeEEEE
Q 000743 1131 PMVSLNDTSTKLAVGDAIGDIKKASIRVYDMQSVTKIKVLDASGPPGLPR-E----SDSVATTVISALIFSPDGEGLVAF 1205 (1313)
Q Consensus 1131 p~Vsf~~~tqrlAVG~~~~~~~~g~i~iydl~t~~k~~~l~~h~~~~~~~-~----~~~~~~~~i~a~~fs~dG~~l~~~ 1205 (1313)
|-+-+....+.|.+=+. +|.+.|||+++. |.. +..= +=.|= . ++......|+.+.++.+|.=|+++
T Consensus 14 ~~~~l~~~~~~Ll~iT~-----~G~l~vWnl~~~-k~~-~~~~--Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l 84 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITS-----SGLLYVWNLKKG-KAV-LPPV--SIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL 84 (219)
T ss_pred ceEEEEeCCCEEEEEeC-----CCeEEEEECCCC-eec-cCCc--cHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE
Confidence 44556667777777788 999999999987 542 2220 00000 0 011346789999999999999999
Q ss_pred ecCCc-----eEEEEEc-Ccchhc
Q 000743 1206 SEHGL-----MIRWWSL-GSVWWE 1223 (1313)
Q Consensus 1206 s~~~~-----~~~~w~~-~~~~~~ 1223 (1313)
|..+. .++-|.. ..+||.
T Consensus 85 sng~~y~y~~~L~~W~~vsd~w~~ 108 (219)
T PF07569_consen 85 SNGDSYSYSPDLGCWIRVSDSWWA 108 (219)
T ss_pred eCCCEEEeccccceeEEeccchhh
Confidence 97432 3455743 555444
No 401
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=41.89 E-value=6.8e+02 Score=30.79 Aligned_cols=177 Identities=12% Similarity=0.102 Sum_probs=82.4
Q ss_pred EeeeecccccCCE---EEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCC-ccEEEEEEeccccCCCCCcc
Q 000743 332 SMVISESFYAPYA---IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHT-GAVLCLAAHRMVGTAKGWSF 407 (1313)
Q Consensus 332 ~l~is~~~fsP~~---LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~-~~V~sLafsP~~s~pDGr~~ 407 (1313)
.+|..+.+|.+++ +..+..||.-.++..|+ .+++..+ |..+. .......++| +.
T Consensus 35 ~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL-------------~t~~i~Q-LTdg~g~~~~g~~~s~-----~~--- 92 (386)
T PF14583_consen 35 RLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDL-------------ATGEITQ-LTDGPGDNTFGGFLSP-----DD--- 92 (386)
T ss_dssp ---TTS--B-TTS-EEEEEE-TTSS-EEEEEET-------------TT-EEEE----SS-B-TTT-EE-T-----TS---
T ss_pred ceeecCCCcCCCCCEEEEEeccCCCcceEEEEc-------------ccCEEEE-CccCCCCCccceEEec-----CC---
Confidence 3667777887763 44455578777755553 4444433 33322 1122334443 22
Q ss_pred CcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEe---C-------------------C
Q 000743 408 NEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG---E-------------------D 465 (1313)
Q Consensus 408 ~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS---~-------------------D 465 (1313)
+.++-......++--|+.+.+....+....+.+-...|..+.. +..++-.- . .
T Consensus 93 -~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d----~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~ 167 (386)
T PF14583_consen 93 -RALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSD----CTKLVGIEISREDWKPLTKWKGFREFYEARPH 167 (386)
T ss_dssp -SEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TT----SSEEEEEEEEGGG-----SHHHHHHHHHC---
T ss_pred -CeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCC----ccEEEEEEEeehhccCccccHHHHHHHhhCCC
Confidence 4554455567888899999886666665666665455532210 23322211 1 1
Q ss_pred CeEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCC-CcEEEEEeCCCCce
Q 000743 466 FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT-GARERVLRGTASHS 539 (1313)
Q Consensus 466 gtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrT-G~lv~~L~GH~a~V 539 (1313)
..|.--|+++|+....+.. ...+..+.|+|....+++=|.. |-.|. =.-|||-+++ |.-.+.+.-|...+
T Consensus 168 ~~i~~idl~tG~~~~v~~~-~~wlgH~~fsP~dp~li~fCHE--Gpw~~-Vd~RiW~i~~dg~~~~~v~~~~~~e 238 (386)
T PF14583_consen 168 CRIFTIDLKTGERKVVFED-TDWLGHVQFSPTDPTLIMFCHE--GPWDL-VDQRIWTINTDGSNVKKVHRRMEGE 238 (386)
T ss_dssp EEEEEEETTT--EEEEEEE-SS-EEEEEEETTEEEEEEEEE---S-TTT-SS-SEEEEETTS---EESS---TTE
T ss_pred ceEEEEECCCCceeEEEec-CccccCcccCCCCCCEEEEecc--CCcce-eceEEEEEEcCCCcceeeecCCCCc
Confidence 2345557777766555543 3467889999999988888877 77762 1247776654 55555555555433
No 402
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=41.86 E-value=74 Score=30.68 Aligned_cols=48 Identities=21% Similarity=0.239 Sum_probs=37.6
Q ss_pred CceEEEEECcCcceEEE-EecCCCCCCCCCCCcccccceEEEEECCCCCeEEEEecCCceEEEEEc
Q 000743 1153 KASIRVYDMQSVTKIKV-LDASGPPGLPRESDSVATTVISALIFSPDGEGLVAFSEHGLMIRWWSL 1217 (1313)
Q Consensus 1153 ~g~i~iydl~t~~k~~~-l~~h~~~~~~~~~~~~~~~~i~a~~fs~dG~~l~~~s~~~~~~~~w~~ 1217 (1313)
-|.|+-||-+. +++ .+| -..-..+++|||+|+|-.-|.....|.+++.
T Consensus 35 ~~~Vvyyd~~~---~~~va~g--------------~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~ 83 (86)
T PF01731_consen 35 WGNVVYYDGKE---VKVVASG--------------FSFANGIAISPDKKYLYVASSLAHSIHVYKR 83 (86)
T ss_pred CceEEEEeCCE---eEEeecc--------------CCCCceEEEcCCCCEEEEEeccCCeEEEEEe
Confidence 67799999764 444 333 2334678999999999999999999999975
No 403
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=41.47 E-value=4.5e+02 Score=27.69 Aligned_cols=115 Identities=10% Similarity=0.015 Sum_probs=66.8
Q ss_pred cCcEEEEEeCCCcEEEEECCCCc--------eEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcE
Q 000743 407 FNEVLVSGSMDCSIRIWDLGSGN--------LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRV 478 (1313)
Q Consensus 407 ~~~~LaSGS~DgtIrVWDl~tg~--------~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~ 478 (1313)
...-|+.++.-+.|.|.+..... .+..+. -...|++++-.|-.. ....+.|+-| ...++..||+....-
T Consensus 9 ~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~-~~~~D~LliG-t~t~llaYDV~~N~d 85 (136)
T PF14781_consen 9 VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKP-DDGRDCLLIG-TQTSLLAYDVENNSD 85 (136)
T ss_pred CceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCC-CCCcCEEEEe-ccceEEEEEcccCch
Confidence 34567888888899999876332 333443 455677776444210 0113455554 467899999987765
Q ss_pred EEEecCCCCCcEEEEEcC----CCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeC
Q 000743 479 ERMFPGHPNYPAKVVWDC----PRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 534 (1313)
Q Consensus 479 l~~l~gH~~~V~sVafsP----dg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~G 534 (1313)
+..-.-+ +.|.++.+-. ..+.+++|+. ..|.=+|.+-.+...+.+|
T Consensus 86 ~Fyke~~-DGvn~i~~g~~~~~~~~l~ivGGn---------csi~Gfd~~G~e~fWtVtg 135 (136)
T PF14781_consen 86 LFYKEVP-DGVNAIVIGKLGDIPSPLVIVGGN---------CSIQGFDYEGNEIFWTVTG 135 (136)
T ss_pred hhhhhCc-cceeEEEEEecCCCCCcEEEECce---------EEEEEeCCCCcEEEEEecc
Confidence 5433333 4677666622 3456776543 5677777654454444443
No 404
>PRK13616 lipoprotein LpqB; Provisional
Probab=40.53 E-value=2e+02 Score=37.20 Aligned_cols=105 Identities=12% Similarity=0.099 Sum_probs=56.4
Q ss_pred ccEEEEEEeccccCCCCCccCcEEEEEe------CCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEE
Q 000743 388 GAVLCLAAHRMVGTAKGWSFNEVLVSGS------MDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLS 461 (1313)
Q Consensus 388 ~~V~sLafsP~~s~pDGr~~~~~LaSGS------~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaS 461 (1313)
..+...+++ +|| +.++-.- .|..-.+|=...+.....+. .....+.-.|+|+ |..+.+
T Consensus 350 ~~vsspaiS-----pdG----~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt-~g~~~t~PsWspD------G~~lw~ 413 (591)
T PRK13616 350 GNITSAALS-----RSG----RQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVL-EGHSLTRPSWSLD------ADAVWV 413 (591)
T ss_pred cCcccceEC-----CCC----CEEEEEEeecCCCCCcceEEEEEeCCCcceeee-cCCCCCCceECCC------CCceEE
Confidence 356667776 566 4433322 34444444332222223332 1224777889998 565666
Q ss_pred EeCC------------CeEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEE
Q 000743 462 VGED------------FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFI 520 (1313)
Q Consensus 462 gS~D------------gtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrV 520 (1313)
.+.. +.+.+.+++.++... .....|..+.|+|||..++... + +.|++
T Consensus 414 v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~--------g~v~V 472 (591)
T PRK13616 414 VVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-G--------GKVYL 472 (591)
T ss_pred EecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-C--------CEEEE
Confidence 5432 223333444333322 2245699999999999888643 2 67776
No 405
>PRK04313 30S ribosomal protein S4e; Validated
Probab=40.45 E-value=1.6e+02 Score=33.69 Aligned_cols=102 Identities=30% Similarity=0.474 Sum_probs=58.7
Q ss_pred ccceEEEEeeccccceeEEEEEeccCCeEEEEcccCCCcCccCCCCccccccccceeeecccccccceEEEEeecCcEEE
Q 000743 32 PWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIA 111 (1313)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (1313)
|.-||||+..++ .+.++=++-|..||+.++||.++ |....|+|=- .--...||..--...||.-|-
T Consensus 79 PvGlmDVIsI~~-~~e~yRvl~d~kgr~~l~~I~~e-----ea~~KL~KV~--------~k~~~~gG~~ql~~hDGrni~ 144 (237)
T PRK04313 79 PVGLMDVISIPE-TGEYYRVLPDEKGRLVLIPISEE-----EAKLKLCKIE--------NKTTVKGGKIQLNLHDGRNIL 144 (237)
T ss_pred CcCceeEEEEcc-CCCeEEEEECCCCcEEEEECChH-----HccceEEEEE--------eEEEecCCEEEEEecCCceEE
Confidence 567999999854 45577778899999999999887 4455566541 111223344444445554432
Q ss_pred EE------EeceeEEEeccCCceeeEEeecccceeecCCCcceeEEeeEEE
Q 000743 112 LV------LKDHCIFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFL 156 (1313)
Q Consensus 112 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 156 (1313)
.- ..+.+++.+ .++.+..-+-|-..-+| .+.||.=.
T Consensus 145 ~~~~~~~k~~Dtv~i~l-~~~kI~~~i~fe~G~l~--------~itgG~n~ 186 (237)
T PRK04313 145 VDVEDDYKTGDSLLISL-PEQEIVDHIPFEEGNLA--------IITGGKHV 186 (237)
T ss_pred ccCccccccCCEEEEEC-CCCceeEEEecCCCCEE--------EEECCeee
Confidence 21 233444433 34445555555444444 45666555
No 406
>PRK13616 lipoprotein LpqB; Provisional
Probab=40.09 E-value=4.6e+02 Score=33.99 Aligned_cols=76 Identities=13% Similarity=0.103 Sum_probs=43.3
Q ss_pred cEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEE---EECCCCcE-E---EEe-cCCCCCcE
Q 000743 419 SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVAL---ASLETLRV-E---RMF-PGHPNYPA 490 (1313)
Q Consensus 419 tIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~L---WDL~t~~~-l---~~l-~gH~~~V~ 490 (1313)
.+.+.+++.++... ...+.|..+.|+|| |..++-.. ++.|.+ -....|.. + ..+ .+-...+.
T Consensus 431 ql~~~~vd~ge~~~---~~~g~Issl~wSpD------G~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~ 500 (591)
T PRK13616 431 QLARTPVDASAVAS---RVPGPISELQLSRD------GVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAV 500 (591)
T ss_pred eEEEEeccCchhhh---ccCCCcCeEEECCC------CCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccc
Confidence 33333555444432 23567999999999 67666555 466666 33334431 1 112 22223357
Q ss_pred EEEEcCCCCEEEEEe
Q 000743 491 KVVWDCPRGYIACLC 505 (1313)
Q Consensus 491 sVafsPdg~~Latgs 505 (1313)
.+.|.+++..+ ++.
T Consensus 501 ~l~W~~~~~L~-V~~ 514 (591)
T PRK13616 501 SLDWRTGDSLV-VGR 514 (591)
T ss_pred cceEecCCEEE-EEe
Confidence 89999998854 543
No 407
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=39.90 E-value=79 Score=24.99 Aligned_cols=32 Identities=6% Similarity=-0.091 Sum_probs=25.0
Q ss_pred CCCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEeC
Q 000743 496 CPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 534 (1313)
Q Consensus 496 Pdg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~G 534 (1313)
|++++|++++.. +++|.++|..+++.+..+.-
T Consensus 1 pd~~~lyv~~~~-------~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSG-------SNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCC-------CCEEEEEECCCCeEEEEEEC
Confidence 678888887654 38999999999888777653
No 408
>PLN00036 40S ribosomal protein S4; Provisional
Probab=39.20 E-value=1.6e+02 Score=34.17 Aligned_cols=102 Identities=25% Similarity=0.308 Sum_probs=61.8
Q ss_pred ccceEEEEeeccccceeEEEEEeccCCeEEEEcccCCCcCccCCCCccccccccceeeecccccccceEEEEeecCcEEE
Q 000743 32 PWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIA 111 (1313)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (1313)
|.-||||+..+. .+.++=++-|-.||+.+.||.++ |..-.|+|=- .--.-.+|..--...||.-|.
T Consensus 83 PvG~mDVIsI~k-t~e~yRvl~D~kGrf~l~~I~~e-----eA~~KLcKV~--------~k~~~~gG~~ql~~hDGrni~ 148 (261)
T PLN00036 83 PAGFMDVISIPK-TNENFRLLYDTKGRFRLHRINDE-----EAKFKLCKVR--------KIQFGQKGIPYLNTHDGRTIR 148 (261)
T ss_pred CCceeEEEEEcC-CCCeEEEEECCCceEEEEEcChH-----HccceEEEEE--------EEEEecCCeEEEEecCCceec
Confidence 567999999844 45577788899999999999887 4555566541 111223444444555665543
Q ss_pred EE-----EeceeEEEeccCCceeeEEeecccceeecCCCcceeEEeeEEE
Q 000743 112 LV-----LKDHCIFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFL 156 (1313)
Q Consensus 112 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 156 (1313)
.- ..+.+.+.+ .++.+..-+-|-...+| .+.||.=+
T Consensus 149 ~~d~~~k~~Dtv~i~l-~~~kI~~~ikfe~G~l~--------~vtgG~n~ 189 (261)
T PLN00036 149 YPDPLIKANDTIKIDL-ETNKIVDFIKFDVGNLV--------MVTGGRNR 189 (261)
T ss_pred cCCCccccCCEEEEeC-CCCceeeEEecCCCCEE--------EEECCeec
Confidence 21 334444444 45556666666555555 45555554
No 409
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=39.10 E-value=1e+02 Score=34.61 Aligned_cols=64 Identities=20% Similarity=0.265 Sum_probs=48.0
Q ss_pred eeeecCCC-ceEEeeccccccCCceEEEEECcCcceEEEEecCCCCCCCCCCCcccccceEEEEECCCCCeEEEEecCCc
Q 000743 1132 MVSLNDTS-TKLAVGDAIGDIKKASIRVYDMQSVTKIKVLDASGPPGLPRESDSVATTVISALIFSPDGEGLVAFSEHGL 1210 (1313)
Q Consensus 1132 ~Vsf~~~t-qrlAVG~~~~~~~~g~i~iydl~t~~k~~~l~~h~~~~~~~~~~~~~~~~i~a~~fs~dG~~l~~~s~~~~ 1210 (1313)
-.++|... ..|-|++. ...|.+|||. ..+++.+-.- ++ -++|..+.++.-|.||||.=.+.+
T Consensus 20 P~~~c~~g~d~Lfva~~-----g~~Vev~~l~-~~~~~~~~~F----------~T-v~~V~~l~y~~~GDYlvTlE~k~~ 82 (215)
T PF14761_consen 20 PTAVCCGGPDALFVAAS-----GCKVEVYDLE-QEECPLLCTF----------ST-VGRVLQLVYSEAGDYLVTLEEKNK 82 (215)
T ss_pred cceeeccCCceEEEEcC-----CCEEEEEEcc-cCCCceeEEE----------cc-hhheeEEEeccccceEEEEEeecC
Confidence 34566656 77766666 7789999999 4467766664 11 478999999999999999988766
Q ss_pred eE
Q 000743 1211 MI 1212 (1313)
Q Consensus 1211 ~~ 1212 (1313)
.-
T Consensus 83 ~~ 84 (215)
T PF14761_consen 83 RS 84 (215)
T ss_pred Cc
Confidence 54
No 410
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.03 E-value=1.7e+02 Score=39.84 Aligned_cols=105 Identities=10% Similarity=0.044 Sum_probs=73.6
Q ss_pred cCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCc-eEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEe
Q 000743 385 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN-LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG 463 (1313)
Q Consensus 385 GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~-~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS 463 (1313)
.....+.++.|+|. .....+....|+.|++..+.-.. ...++. -+..+++++|+|. |..++.|-
T Consensus 153 ek~vf~~~~~wnP~--------vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav~WSpr------GKQl~iG~ 217 (1405)
T KOG3630|consen 153 EKPVFQLKNVWNPL--------VPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTAVLWSPR------GKQLFIGR 217 (1405)
T ss_pred ccccccccccccCC--------ccchhhhhccccchhhhhhhhhhhhhcccC-cccceeeEEeccc------cceeeEec
Confidence 33456778899973 22346677789999988775322 233333 4567899999998 78999999
Q ss_pred CCCeEEEEECCCCcEEEEecCC----CCCcEEEEEcCCCCEEEEEe
Q 000743 464 EDFSVALASLETLRVERMFPGH----PNYPAKVVWDCPRGYIACLC 505 (1313)
Q Consensus 464 ~DgtV~LWDL~t~~~l~~l~gH----~~~V~sVafsPdg~~Latgs 505 (1313)
..|++.-|-. +++....+++. ..+|.+|+|-....|+++-+
T Consensus 218 nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 218 NNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred CCCeEEEeec-ccceeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence 9999998865 34444444433 24689999999888888643
No 411
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=38.90 E-value=4.5e+02 Score=33.52 Aligned_cols=122 Identities=10% Similarity=-0.062 Sum_probs=70.0
Q ss_pred cEEEEEeCCCcEEEEECCCCceEEEEeccC-CCEEE---EEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecC
Q 000743 409 EVLVSGSMDCSIRIWDLGSGNLITVMHHHV-APVRQ---IILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPG 484 (1313)
Q Consensus 409 ~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~-~~V~s---V~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~g 484 (1313)
..++.++.++.|.-.|..+|+.+-++.... ..+.. ..+...+ ....+..++.++.|+.+.-.|.++|+.+.....
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg-~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~ 148 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRG-VALYDGKVFFGTLDARLVALDAKTGKVVWSKKN 148 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCccccccccccccccc-ceEECCEEEEEcCCCEEEEEECCCCCEEeeccc
Confidence 467777788899999999999887765321 11111 0000000 001134567778899999999999999876542
Q ss_pred CCCC-cEEEEEcC--CCCEEEEEecCCCCCCCCCCEEEEEECCCCcEEEEEe
Q 000743 485 HPNY-PAKVVWDC--PRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 533 (1313)
Q Consensus 485 H~~~-V~sVafsP--dg~~Latgs~DlsGssD~DgtIrVWDlrTG~lv~~L~ 533 (1313)
.... -..+.-.| .+..++++... +-...+|.|+-+|.+||+.+-.+.
T Consensus 149 ~~~~~~~~~tssP~v~~g~Vivg~~~--~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 149 GDYKAGYTITAAPLVVKGKVITGISG--GEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred ccccccccccCCcEEECCEEEEeecc--cccCCCcEEEEEECCCCceeEecc
Confidence 1100 00111111 13355554431 111124899999999999876544
No 412
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=38.12 E-value=70 Score=38.39 Aligned_cols=80 Identities=13% Similarity=0.245 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHhhhccCCChhhhhhHHHHHH-HHhcChhhHhhcHHHHHHHhhhcc-----CC-----CCchhhhhhhhh
Q 000743 1050 ILGFLTVVESQIWSTASDSPVHLVSIMTIIR-VVRGSPRNVAQHLDKVVNFILQTM-----DP-----GNSVMRKTCLHT 1118 (1313)
Q Consensus 1050 ~~~fi~~i~~~i~~~~~~~~~~~~~l~~l~~-~i~~~p~~~~~~l~~v~~~vl~~l-----Dp-----~~~~~R~~~~~~ 1118 (1313)
.|-|+..|+.+|.....++-.....++.+++ |+.+--..+.+||..+|-++|.|| ++ ++-..| ..
T Consensus 212 lPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LR----d~ 287 (343)
T cd08050 212 LPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALR----DY 287 (343)
T ss_pred hhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHH----HH
Confidence 3779999999987322224444555666655 566666678889999999999887 33 344567 56
Q ss_pred HHHHHHHHhhccCee
Q 000743 1119 SMAALKEIVHVFPMV 1133 (1313)
Q Consensus 1119 ~t~~l~~~v~~fp~V 1133 (1313)
|-..|..++++|...
T Consensus 288 AA~ll~~i~~~f~~~ 302 (343)
T cd08050 288 AARLLAQICRKFSTS 302 (343)
T ss_pred HHHHHHHHHHHcCCC
Confidence 778888888877665
No 413
>PTZ00223 40S ribosomal protein S4; Provisional
Probab=37.70 E-value=1.7e+02 Score=34.12 Aligned_cols=94 Identities=24% Similarity=0.328 Sum_probs=55.5
Q ss_pred ccceEEEEeeccccceeEEEEEeccCCeEEEEcccCCCcCccCCCCccccccccceeeecccccccceEEEEeecCcEEE
Q 000743 32 PWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIA 111 (1313)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (1313)
|.-||||+..+. .+.++=++-|-.||+.++||.++ |....|+|=- .. -.-.||..--...||.-|.
T Consensus 80 PvGlMDVIsI~k-t~e~yRvl~D~kGrf~l~~I~~e-----eA~~KLcKV~-~k-------~~~~gG~~ql~~hDGrnI~ 145 (273)
T PTZ00223 80 PAGFMDVVEIPK-TGDRFRILYDVKGRFALVKVSEA-----EAQIKLMKVV-NV-------YTATGRIPVAVTHDGHRIR 145 (273)
T ss_pred CCceeEEEEEcC-CCCeEEEEECCCCcEEEEEcChH-----HccceEEEEE-EE-------EEecCCeeEEEecCCceec
Confidence 557999998844 55677788899999999999987 4455666541 11 1122333333445555433
Q ss_pred EE-----EeceeEEEeccCCceeeEEeeccccee
Q 000743 112 LV-----LKDHCIFRLLGSGSTIGEICFVDNLFC 140 (1313)
Q Consensus 112 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (1313)
.- ..+.+++.+ .++.+..-+-|-..-+|
T Consensus 146 ~~d~~~k~~Dtv~i~l-~~~kI~~~ikfe~G~l~ 178 (273)
T PTZ00223 146 YPDPRTSRGDTLVYNV-KEKKVVDLIKNRNGKVV 178 (273)
T ss_pred cCCccccCCCEEEEEC-CCCeeeEEEecCCCCEE
Confidence 21 234444443 44555555666555554
No 414
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=36.67 E-value=60 Score=31.88 Aligned_cols=52 Identities=21% Similarity=0.336 Sum_probs=37.9
Q ss_pred hHHHHHHHHhcChhhHhhcHHHHHHHhhhccCCCCchhhhhhhhhHHHHHHHHhhc
Q 000743 1074 SIMTIIRVVRGSPRNVAQHLDKVVNFILQTMDPGNSVMRKTCLHTSMAALKEIVHV 1129 (1313)
Q Consensus 1074 ~l~~l~~~i~~~p~~~~~~l~~v~~~vl~~lDp~~~~~R~~~~~~~t~~l~~~v~~ 1129 (1313)
+|+.|-.+...-+..+..|+++++..|++|++=.+...|- .|-+.|..+++.
T Consensus 6 gli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy----~AcEaL~ni~k~ 57 (97)
T PF12755_consen 6 GLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRY----YACEALYNISKV 57 (97)
T ss_pred HHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHH----HHHHHHHHHHHH
Confidence 4555555555556668899999999999999999999894 444555555543
No 415
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=35.04 E-value=1.9e+02 Score=36.28 Aligned_cols=60 Identities=17% Similarity=0.194 Sum_probs=49.3
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECC
Q 000743 456 SDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 524 (1313)
Q Consensus 456 g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlr 524 (1313)
..+++.+|.-|-|++||--..+....+++-...|..+....+|.++++.|.. .+-+-|++
T Consensus 573 sGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~---------yllL~d~~ 632 (776)
T COG5167 573 SGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN---------YLLLTDVP 632 (776)
T ss_pred CceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc---------eEEEEecc
Confidence 3589999999999999965555666677777789999999999999998874 78777764
No 416
>PF13645 YkuD_2: L,D-transpeptidase catalytic domain
Probab=34.48 E-value=85 Score=34.26 Aligned_cols=95 Identities=14% Similarity=0.222 Sum_probs=59.5
Q ss_pred cCCCCchhhhhhhhhHHHHHHHHhhc-------cCeeeecCCCceEEeeccccccCCceEEEEECcCcceEE-EEecCCC
Q 000743 1104 MDPGNSVMRKTCLHTSMAALKEIVHV-------FPMVSLNDTSTKLAVGDAIGDIKKASIRVYDMQSVTKIK-VLDASGP 1175 (1313)
Q Consensus 1104 lDp~~~~~R~~~~~~~t~~l~~~v~~-------fp~Vsf~~~tqrlAVG~~~~~~~~g~i~iydl~t~~k~~-~l~~h~~ 1175 (1313)
|...++......++.|..++..+.++ +-.|+|...+. +....||||++++-+. .+-+||.
T Consensus 4 l~~~~~~l~~~~~~~a~~~~~~~~~~~~~~~~~l~iIDfs~pS~------------~~R~~v~Dl~~~~~l~~~~VaHG~ 71 (176)
T PF13645_consen 4 LNLEAPKLSPKAFQKALKAYQCAKKKKIYNKDILTIIDFSKPSG------------EKRFFVIDLKKGKLLYNTLVAHGR 71 (176)
T ss_pred hhhhccCCCHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCC------------CCeEEEEECCCCEEEEeeeeeccc
Confidence 44555666777888888888888755 23345554432 5678999999996665 6999973
Q ss_pred CCCCCCCCcccccceEEEEECCCCCeEEEEecCCceEEEEEcCcchhcccc
Q 000743 1176 PGLPRESDSVATTVISALIFSPDGEGLVAFSEHGLMIRWWSLGSVWWEKLS 1226 (1313)
Q Consensus 1176 ~~~~~~~~~~~~~~i~a~~fs~dG~~l~~~s~~~~~~~~w~~~~~~~~~lg 1226 (1313)
- ++.-.|-.||..-. ..-..+=++.++....|.-|
T Consensus 72 g----------sg~~~a~~FSN~~~------S~~SSlG~y~tg~~Y~G~~G 106 (176)
T PF13645_consen 72 G----------SGNLYATSFSNRPG------SHQSSLGFYKTGETYYGKHG 106 (176)
T ss_pred C----------CCCCccccCcCCCC------CCCcCceeEEcCCEecCCCc
Confidence 2 44555778876511 11223334555555555555
No 417
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=33.75 E-value=58 Score=40.24 Aligned_cols=83 Identities=19% Similarity=0.275 Sum_probs=57.8
Q ss_pred ccccccchhHHHHHHHHHhhhccCCChhhhhhHHHHHHHHhcCh-hhHhhcHHHHHHHhhhccCCCCchhhhhhhhhHHH
Q 000743 1043 PSLAMADILGFLTVVESQIWSTASDSPVHLVSIMTIIRVVRGSP-RNVAQHLDKVVNFILQTMDPGNSVMRKTCLHTSMA 1121 (1313)
Q Consensus 1043 ~~ia~~~~~~fi~~i~~~i~~~~~~~~~~~~~l~~l~~~i~~~p-~~~~~~l~~v~~~vl~~lDp~~~~~R~~~~~~~t~ 1121 (1313)
.-+|+-+|..=|..|...|.+ .+-+.....+..+-+++++-+ ..+.+.++.++=.+++..|-.....||. |..
T Consensus 397 ~~las~~P~~~I~~i~~~Ilt--~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKt----aVf 470 (516)
T KOG2956|consen 397 TTLASHLPLQCIVNISPLILT--ADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKT----AVF 470 (516)
T ss_pred HHHHhhCchhHHHHHhhHHhc--CcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhh----HHH
Confidence 456888999999999888865 344433334445667777554 4677789999999999999888888954 344
Q ss_pred HHHHHhhccC
Q 000743 1122 ALKEIVHVFP 1131 (1313)
Q Consensus 1122 ~l~~~v~~fp 1131 (1313)
.|=.||.+.-
T Consensus 471 CLVamv~~vG 480 (516)
T KOG2956|consen 471 CLVAMVNRVG 480 (516)
T ss_pred hHHHHHHHHh
Confidence 4444544433
No 418
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=33.02 E-value=1.7e+02 Score=33.49 Aligned_cols=69 Identities=26% Similarity=0.213 Sum_probs=40.1
Q ss_pred eeecCCCceEEeeccccccCCceEEEEECcCcceEEEEecCCCCCCCCCCCcccccceEEEEECCCCCeEEEEecCCceE
Q 000743 1133 VSLNDTSTKLAVGDAIGDIKKASIRVYDMQSVTKIKVLDASGPPGLPRESDSVATTVISALIFSPDGEGLVAFSEHGLMI 1212 (1313)
Q Consensus 1133 Vsf~~~tqrlAVG~~~~~~~~g~i~iydl~t~~k~~~l~~h~~~~~~~~~~~~~~~~i~a~~fs~dG~~l~~~s~~~~~~ 1212 (1313)
-+|.....-.+|... .++...++|-.++ +....+-.. |+ ..+.|+++.+||||.++|-....+..=
T Consensus 71 PS~d~~g~~W~v~~~----~~~~~~~~~~~~g-~~~~~~v~~-~~--------~~~~I~~l~vSpDG~RvA~v~~~~~~~ 136 (253)
T PF10647_consen 71 PSWDPDGWVWTVDDG----SGGVRVVRDSASG-TGEPVEVDW-PG--------LRGRITALRVSPDGTRVAVVVEDGGGG 136 (253)
T ss_pred ccccCCCCEEEEEcC----CCceEEEEecCCC-cceeEEecc-cc--------cCCceEEEEECCCCcEEEEEEecCCCC
Confidence 345555666666654 1344444455554 222222221 11 022899999999999999999765554
Q ss_pred EEE
Q 000743 1213 RWW 1215 (1313)
Q Consensus 1213 ~~w 1215 (1313)
++|
T Consensus 137 ~v~ 139 (253)
T PF10647_consen 137 RVY 139 (253)
T ss_pred eEE
Confidence 455
No 419
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=31.66 E-value=46 Score=25.34 Aligned_cols=24 Identities=33% Similarity=0.438 Sum_probs=18.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHH
Q 000743 823 LQLLVSFWQDESEHVRMAARSLFH 846 (1313)
Q Consensus 823 L~~La~~WqD~~~evR~AAr~L~~ 846 (1313)
+..|.+.-+|++++||+||=.-|.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~ 25 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLG 25 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHH
Confidence 456777888999999999866665
No 420
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=31.46 E-value=1.5e+02 Score=23.35 Aligned_cols=28 Identities=14% Similarity=0.285 Sum_probs=22.2
Q ss_pred cEEEEEeCCCcEEEEECCCCceEEEEec
Q 000743 409 EVLVSGSMDCSIRIWDLGSGNLITVMHH 436 (1313)
Q Consensus 409 ~~LaSGS~DgtIrVWDl~tg~~l~t~~g 436 (1313)
.++++.-.+++|.++|..+++.+.++..
T Consensus 5 ~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 5 KLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred EEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 4556666789999999999988887764
No 421
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=30.88 E-value=4.1e+02 Score=33.00 Aligned_cols=96 Identities=7% Similarity=-0.031 Sum_probs=61.5
Q ss_pred EEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEE-EEECCCCCC-----
Q 000743 379 SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQ-IILSPPQTE----- 452 (1313)
Q Consensus 379 ~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~s-V~fsPd~~~----- 452 (1313)
....|......+.++..+| +| ++.+....=|.|.++|+.++..++.++|..+.=.. +........
T Consensus 299 ~r~~l~D~~R~~~~i~~sP-----~~----~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~ 369 (415)
T PF14655_consen 299 MRFGLPDSKREGESICLSP-----SG----RLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNS 369 (415)
T ss_pred eEEeeccCCceEEEEEECC-----CC----CEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccc
Confidence 4456666777788998885 44 67777666789999999999999998886553111 111111000
Q ss_pred ------CCCC-CEEEEEeCCCeEEEEECCCCcEEEEec
Q 000743 453 ------HPWS-DCFLSVGEDFSVALASLETLRVERMFP 483 (1313)
Q Consensus 453 ------~~~g-~~LaSgS~DgtV~LWDL~t~~~l~~l~ 483 (1313)
.+.. -+++-+-.-|.|-+|++++|..+..+.
T Consensus 370 ~~~~~~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 370 NSPKSSSRFALFLVIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred cccCCCCcceEEEEEEeccCCeEEEEecCCCCEEEEEE
Confidence 0001 133345567888999998888776664
No 422
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=30.52 E-value=4e+02 Score=34.80 Aligned_cols=73 Identities=11% Similarity=0.110 Sum_probs=50.1
Q ss_pred cCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECC---------CCceEEEE--eccC-CCEEEEEECCCCCC
Q 000743 385 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLG---------SGNLITVM--HHHV-APVRQIILSPPQTE 452 (1313)
Q Consensus 385 GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~---------tg~~l~t~--~gH~-~~V~sV~fsPd~~~ 452 (1313)
...+.|.++.|.. .||| +.+++-|..+.|.++--. +..++.++ ..|+ .+|.+..|.++
T Consensus 70 ~~~~~I~dLDWts---t~d~----qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~--- 139 (631)
T PF12234_consen 70 SEDDPIRDLDWTS---TPDG----QSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKD--- 139 (631)
T ss_pred cCCCceeeceeee---cCCC----CEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecC---
Confidence 4567899999974 5777 889999999999998642 11234333 3444 57888888888
Q ss_pred CCCCCEEEEEeCCCeEEEEE
Q 000743 453 HPWSDCFLSVGEDFSVALAS 472 (1313)
Q Consensus 453 ~~~g~~LaSgS~DgtV~LWD 472 (1313)
|.+++.+ ++.+.++|
T Consensus 140 ---G~LvV~s--GNqlfv~d 154 (631)
T PF12234_consen 140 ---GTLVVGS--GNQLFVFD 154 (631)
T ss_pred ---CeEEEEe--CCEEEEEC
Confidence 4544433 35677776
No 423
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=29.83 E-value=6.1e+02 Score=29.78 Aligned_cols=96 Identities=7% Similarity=0.084 Sum_probs=59.0
Q ss_pred CcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEe------CCCeEEEEECCCCcEEEEecC-----CC
Q 000743 418 CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG------EDFSVALASLETLRVERMFPG-----HP 486 (1313)
Q Consensus 418 gtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS------~DgtV~LWDL~t~~~l~~l~g-----H~ 486 (1313)
..|++||..+.+-..--.+-.+.|+++.|..+ .+.++.|. ....+..||..+.. ...+.+ -+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~------~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~~~s~~ip 88 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASN------NQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGGGSSNSIP 88 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecC------CEEEEEEeeEECCCCceeEEEEecCCCe-eeecCCcccccCC
Confidence 46999998877655544556778999999855 35666664 45678899987653 333333 13
Q ss_pred CCcEEEEEcC-CC-CEEEEEecCCCCCCCCCCEEEEEECCC
Q 000743 487 NYPAKVVWDC-PR-GYIACLCRDHSRTSDAVDVLFIWDVKT 525 (1313)
Q Consensus 487 ~~V~sVafsP-dg-~~Latgs~DlsGssD~DgtIrVWDlrT 525 (1313)
++|..+.+.. ++ ++.+.|.. .+++..|.-||-.+
T Consensus 89 gpv~a~~~~~~d~~~~~~aG~~-----~~g~~~l~~~dGs~ 124 (281)
T PF12768_consen 89 GPVTALTFISNDGSNFWVAGRS-----ANGSTFLMKYDGSS 124 (281)
T ss_pred CcEEEEEeeccCCceEEEecee-----cCCCceEEEEcCCc
Confidence 5777777633 33 34444321 23235677786443
No 424
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=29.50 E-value=4.4e+02 Score=32.45 Aligned_cols=48 Identities=21% Similarity=0.261 Sum_probs=40.1
Q ss_pred cEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECC
Q 000743 419 SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE 474 (1313)
Q Consensus 419 tIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~ 474 (1313)
.|++|+. +|+.+.++.--.+.|.++.|..+ ..++....||+++++|+.
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~-------e~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDD-------EELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCC-------CeEEEEEcCCEEEEEeCC
Confidence 5899986 67778876655589999999886 568889999999999986
No 425
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=29.50 E-value=1e+03 Score=28.27 Aligned_cols=105 Identities=10% Similarity=0.125 Sum_probs=54.1
Q ss_pred CCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCC
Q 000743 386 HTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGED 465 (1313)
Q Consensus 386 H~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~D 465 (1313)
-.+.+..+..+ +|| ++++.++.-....-||.-...-...-..-...|..+.|.|+ +.+.+ ....
T Consensus 143 ~~gs~~~~~r~-----~dG----~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~------~~lw~-~~~G 206 (302)
T PF14870_consen 143 TSGSINDITRS-----SDG----RYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPD------GNLWM-LARG 206 (302)
T ss_dssp ----EEEEEE------TTS-----EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TT------S-EEE-EETT
T ss_pred CcceeEeEEEC-----CCC----cEEEEECcccEEEEecCCCccceEEccCccceehhceecCC------CCEEE-EeCC
Confidence 34667777765 566 77777766666678886432222222224678999999998 34434 4588
Q ss_pred CeEEEEEC-CCCcEEEE--ecC-CCC-CcEEEEEcCCCCEEEEEec
Q 000743 466 FSVALASL-ETLRVERM--FPG-HPN-YPAKVVWDCPRGYIACLCR 506 (1313)
Q Consensus 466 gtV~LWDL-~t~~~l~~--l~g-H~~-~V~sVafsPdg~~Latgs~ 506 (1313)
+.++.=+. ...+.-.. .+. -.+ .+..++|.+++...++|+.
T Consensus 207 g~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~ 252 (302)
T PF14870_consen 207 GQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS 252 (302)
T ss_dssp TEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST
T ss_pred cEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC
Confidence 88888772 22222111 111 112 3689999999888886543
No 426
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=28.81 E-value=1.5e+02 Score=31.81 Aligned_cols=99 Identities=23% Similarity=0.265 Sum_probs=63.5
Q ss_pred hhhhHHhhhhhhhhcCCCCChhHHHHHHHHHHHHHHccCcchHHHHHHHH----Hhhhhhcccccccccchhhhhchhee
Q 000743 936 MTSHIIVAAALAIWYPSLVKPTLAMLVVQPLIKLVMATNEKYSSTAAELL----AEGMESTWKTCIGFEIPRLIGDIFFQ 1011 (1313)
Q Consensus 936 ~~~~i~~~~~la~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~r~~AieLl----~rGf~~~W~~~i~~dv~~ll~~~~~~ 1011 (1313)
+...++..+-|++.||..+++-+ ..|...|.+++..+|++|+-.+ .+|| .-|+..+ +..+
T Consensus 5 R~n~i~~l~DL~~r~~~~ve~~~-----~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-ik~k~~l-------~~~~--- 68 (178)
T PF12717_consen 5 RNNAIIALGDLCIRYPNLVEPYL-----PNLYKCLRDEDPLVRKTALLVLSHLILEDM-IKVKGQL-------FSRI--- 68 (178)
T ss_pred HHHHHHHHHHHHHhCcHHHHhHH-----HHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-eeehhhh-------hHHH---
Confidence 44557777889998887777554 4556788899999999998655 4566 3454443 1111
Q ss_pred eecccCCCCCcCCCCCCcHHHHHHHHhhccccccccc-chhHHHHHHHHHhh
Q 000743 1012 IECVSNSSANLAGQHPAVPASIRETLVGILLPSLAMA-DILGFLTVVESQIW 1062 (1313)
Q Consensus 1012 i~~~~~~~~~~~~~~~~~~~~ar~al~~~~~~~ia~~-~~~~fi~~i~~~i~ 1062 (1313)
+.++ ..+.+++...|+..+ ..++.. +|..|...+-.-|.
T Consensus 69 l~~l-------~D~~~~Ir~~A~~~~-----~e~~~~~~~~~i~~~~~e~i~ 108 (178)
T PF12717_consen 69 LKLL-------VDENPEIRSLARSFF-----SELLKKRNPNIIYNNFPELIS 108 (178)
T ss_pred HHHH-------cCCCHHHHHHHHHHH-----HHHHHhccchHHHHHHHHHHH
Confidence 1122 112366778888888 556666 67777666655555
No 427
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.10 E-value=1.6e+02 Score=38.33 Aligned_cols=143 Identities=17% Similarity=0.226 Sum_probs=78.5
Q ss_pred CCCCChhHHHHHHHHHHHHHHccCcchHHHHHHHHHhhhhhcccccccccchhhhhchhee-eecccCCCCCcCCCCCCc
Q 000743 951 PSLVKPTLAMLVVQPLIKLVMATNEKYSSTAAELLAEGMESTWKTCIGFEIPRLIGDIFFQ-IECVSNSSANLAGQHPAV 1029 (1313)
Q Consensus 951 ~~~~~~~l~~~~~~~l~~ll~~~~~~~r~~AieLl~rGf~~~W~~~i~~dv~~ll~~~~~~-i~~~~~~~~~~~~~~~~~ 1029 (1313)
-+.+.|+|||.+|.-+..||-....-+|--||-++=|=| ..|= |-.|. .|.- .+.+ ..+++.+
T Consensus 134 S~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvF----LkYP--eAlr~---~FprL~EkL-------eDpDp~V 197 (877)
T KOG1059|consen 134 SCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVF----LKYP--EALRP---CFPRLVEKL-------EDPDPSV 197 (877)
T ss_pred ccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHH----Hhhh--HhHhh---hHHHHHHhc-------cCCCchH
Confidence 456899999999999999986655557889999997777 3443 22221 1111 1111 1122444
Q ss_pred HHHHHHHHhhcccccccccchhHHHHHHHHHhhhccCCChhhhhhHHHHHH----HHhcChhhHhhcHHHHHHHhhhccC
Q 000743 1030 PASIRETLVGILLPSLAMADILGFLTVVESQIWSTASDSPVHLVSIMTIIR----VVRGSPRNVAQHLDKVVNFILQTMD 1105 (1313)
Q Consensus 1030 ~~~ar~al~~~~~~~ia~~~~~~fi~~i~~~i~~~~~~~~~~~~~l~~l~~----~i~~~p~~~~~~l~~v~~~vl~~lD 1105 (1313)
-..|-.-+ +-+|+.||.-|++- +-..-....++.. +.-|..||. +..-.|+.--..++.+.+++
T Consensus 198 ~SAAV~VI-----CELArKnPknyL~L-AP~ffkllttSsN-NWmLIKiiKLF~aLtplEPRLgKKLieplt~li----- 265 (877)
T KOG1059|consen 198 VSAAVSVI-----CELARKNPQNYLQL-APLFYKLLVTSSN-NWVLIKLLKLFAALTPLEPRLGKKLIEPITELM----- 265 (877)
T ss_pred HHHHHHHH-----HHHHhhCCcccccc-cHHHHHHHhccCC-CeehHHHHHHHhhccccCchhhhhhhhHHHHHH-----
Confidence 45555555 77888888777632 2222111222221 112222222 22344555555555555544
Q ss_pred CCCchhhhhhhhhHHHHHHHHhhcc
Q 000743 1106 PGNSVMRKTCLHTSMAALKEIVHVF 1130 (1313)
Q Consensus 1106 p~~~~~R~~~~~~~t~~l~~~v~~f 1130 (1313)
+. ..||..|.|.|.+-
T Consensus 266 ------~s---T~AmSLlYECvNTV 281 (877)
T KOG1059|consen 266 ------ES---TVAMSLLYECVNTV 281 (877)
T ss_pred ------Hh---hHHHHHHHHHHHHh
Confidence 21 46778888887654
No 428
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=28.05 E-value=5.3e+02 Score=29.19 Aligned_cols=102 Identities=20% Similarity=0.313 Sum_probs=64.9
Q ss_pred cEEEEEeCCCcEEEEECC--CCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCC------eEEEE---ECC--C
Q 000743 409 EVLVSGSMDCSIRIWDLG--SGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDF------SVALA---SLE--T 475 (1313)
Q Consensus 409 ~~LaSGS~DgtIrVWDl~--tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~Dg------tV~LW---DL~--t 475 (1313)
+.|+.+...+.|.+||+. ..+++.+|. --+.|..+.++.. |++++|--.+. .+|+| ... .
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~------GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~ 101 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEA------GDYLVTLEEKNKRSPVDFVRAYFNWRSQKEE 101 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccc------cceEEEEEeecCCccceEEEEEEEhhhhccc
Confidence 344444566789999998 345677776 4488999999988 79999975432 55664 222 1
Q ss_pred CcEEE-EecCC---------------------CCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCC
Q 000743 476 LRVER-MFPGH---------------------PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 526 (1313)
Q Consensus 476 ~~~l~-~l~gH---------------------~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG 526 (1313)
..++. .+.|| ...+.+++-.|...-|++||. +++.+|.++.+
T Consensus 102 ~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~---------~~l~lf~l~~~ 165 (215)
T PF14761_consen 102 NSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG---------NKLVLFTLKYQ 165 (215)
T ss_pred CCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC---------CEEEEEEEEEE
Confidence 12221 22232 224677888886555666665 59999987643
No 429
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=28.03 E-value=1e+03 Score=27.77 Aligned_cols=113 Identities=10% Similarity=0.098 Sum_probs=68.3
Q ss_pred CCceEEEEeeeecccccCCEEEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCC
Q 000743 325 KEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKG 404 (1313)
Q Consensus 325 H~~~Vts~l~is~~~fsP~~LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDG 404 (1313)
.++.|+++... ...+++ +.++.|.+++|+.. ++-.....+..+. .|.++...
T Consensus 87 ~~g~V~ai~~~------~~~lv~-~~g~~l~v~~l~~~------------~~l~~~~~~~~~~-~i~sl~~~-------- 138 (321)
T PF03178_consen 87 VKGPVTAICSF------NGRLVV-AVGNKLYVYDLDNS------------KTLLKKAFYDSPF-YITSLSVF-------- 138 (321)
T ss_dssp ESS-EEEEEEE------TTEEEE-EETTEEEEEEEETT------------SSEEEEEEE-BSS-SEEEEEEE--------
T ss_pred ecCcceEhhhh------CCEEEE-eecCEEEEEEccCc------------ccchhhheecceE-EEEEEecc--------
Confidence 35778885444 124444 45689999777521 1112333333333 67777765
Q ss_pred CccCcEEEEEeCCCcEEEEECCC-CceEEEEec--cCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECC
Q 000743 405 WSFNEVLVSGSMDCSIRIWDLGS-GNLITVMHH--HVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE 474 (1313)
Q Consensus 405 r~~~~~LaSGS~DgtIrVWDl~t-g~~l~t~~g--H~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~ 474 (1313)
+++++.|...+.+.++..+. +..+..+.. ...+++++.|-++ ++.++.+..+|.+.++...
T Consensus 139 ---~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d------~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 139 ---KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVD------EDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp ---TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-S------SSEEEEEETTSEEEEEEE-
T ss_pred ---ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecC------CcEEEEEcCCCeEEEEEEC
Confidence 26899999888888774432 332333322 3456889988877 4689999999999998775
No 430
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.51 E-value=3.9e+02 Score=33.88 Aligned_cols=76 Identities=16% Similarity=0.180 Sum_probs=47.3
Q ss_pred CEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEEC---------CCCcEEE---Ee-------cCC-CCCcEEEEEcCCC-
Q 000743 440 PVRQIILSPPQTEHPWSDCFLSVGEDFSVALASL---------ETLRVER---MF-------PGH-PNYPAKVVWDCPR- 498 (1313)
Q Consensus 440 ~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL---------~t~~~l~---~l-------~gH-~~~V~sVafsPdg- 498 (1313)
.|..|..++. |..++-.|.||.+.++=. ++|+... ++ ... .-.+..++|||+.
T Consensus 105 eV~~vl~s~~------GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~ 178 (741)
T KOG4460|consen 105 EVYQVLLSPT------GSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSI 178 (741)
T ss_pred EEEEEEecCC------CceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCcc
Confidence 4667777777 677888888887765431 2333221 11 111 1145688999986
Q ss_pred --CEEEEEecCCCCCCCCCCEEEEEECCCCcEE
Q 000743 499 --GYIACLCRDHSRTSDAVDVLFIWDVKTGARE 529 (1313)
Q Consensus 499 --~~Latgs~DlsGssD~DgtIrVWDlrTG~lv 529 (1313)
..|..-..| .+||+||....+.+
T Consensus 179 ~D~hL~iL~sd--------nviRiy~lS~~tel 203 (741)
T KOG4460|consen 179 LDPHLVLLTSD--------NVIRIYSLSEPTEL 203 (741)
T ss_pred CCceEEEEecC--------cEEEEEecCCcchh
Confidence 456554444 99999999765444
No 431
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.87 E-value=1.1e+03 Score=28.05 Aligned_cols=74 Identities=12% Similarity=0.092 Sum_probs=52.8
Q ss_pred EEEEECCCCceEEEE--------eccCCCEEEEEECCCCCCCCCCCEEEEEeCC-----CeEEEEECCCC-cEEEEecCC
Q 000743 420 IRIWDLGSGNLITVM--------HHHVAPVRQIILSPPQTEHPWSDCFLSVGED-----FSVALASLETL-RVERMFPGH 485 (1313)
Q Consensus 420 IrVWDl~tg~~l~t~--------~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~D-----gtV~LWDL~t~-~~l~~l~gH 485 (1313)
..++|....+...++ .+|. .|+|+ |.++...-.| |.|-+||.+.+ +-+..+..|
T Consensus 93 ~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~d------G~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~ 160 (366)
T COG3490 93 AMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPD------GRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTH 160 (366)
T ss_pred EEEECCCCCcCcEEEecccCceeeccc------ccCCC------CcEEEeecCCCCCCCceEEEEecccccceecccccC
Confidence 347777766554443 3443 47888 6777776555 67999999854 445678888
Q ss_pred CCCcEEEEEcCCCCEEEEEe
Q 000743 486 PNYPAKVVWDCPRGYIACLC 505 (1313)
Q Consensus 486 ~~~V~sVafsPdg~~Latgs 505 (1313)
.-..-.+.|.+||+.++.+.
T Consensus 161 GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 161 GIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred CcCcceeEEecCCcEEEEeC
Confidence 77778999999999998743
No 432
>PHA02713 hypothetical protein; Provisional
Probab=26.84 E-value=2e+02 Score=36.92 Aligned_cols=75 Identities=7% Similarity=0.022 Sum_probs=43.9
Q ss_pred CCEEEEEeCC------CeEEEEECCC-C--cEEEEecCCCCCcEEEEEcCCCCEEEEEecCCCCCCCCCCEEEEEECCCC
Q 000743 456 SDCFLSVGED------FSVALASLET-L--RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 526 (1313)
Q Consensus 456 g~~LaSgS~D------gtV~LWDL~t-~--~~l~~l~gH~~~V~sVafsPdg~~Latgs~DlsGssD~DgtIrVWDlrTG 526 (1313)
+.+.+.||.+ .++..||.++ . ..+..++........+.+ ++...++|+.| | ..++..||..|.
T Consensus 464 ~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~--~----~~~~e~yd~~~~ 535 (557)
T PHA02713 464 DDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYE--S----YMLQDTFNVYTY 535 (557)
T ss_pred CEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeec--c----eeehhhcCcccc
Confidence 4566666654 2467899886 3 344444433333333443 56667777766 2 137889999887
Q ss_pred cEEEEEeCCCCc
Q 000743 527 ARERVLRGTASH 538 (1313)
Q Consensus 527 ~lv~~L~GH~a~ 538 (1313)
+-...-..|...
T Consensus 536 ~W~~~~~~~~~~ 547 (557)
T PHA02713 536 EWNHICHQHSNS 547 (557)
T ss_pred cccchhhhcCCc
Confidence 765554555543
No 433
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=26.14 E-value=97 Score=36.20 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=19.0
Q ss_pred CceEEEEECcCcceEEEEecC
Q 000743 1153 KASIRVYDMQSVTKIKVLDAS 1173 (1313)
Q Consensus 1153 ~g~i~iydl~t~~k~~~l~~h 1173 (1313)
.+.|+||||++++=|++++.|
T Consensus 87 ~~glIV~dl~~~~s~Rv~~~~ 107 (287)
T PF03022_consen 87 GPGLIVYDLATGKSWRVLHNS 107 (287)
T ss_dssp TCEEEEEETTTTEEEEEETCG
T ss_pred cCcEEEEEccCCcEEEEecCC
Confidence 457999999999999999987
No 434
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=26.04 E-value=5e+02 Score=31.91 Aligned_cols=149 Identities=17% Similarity=0.163 Sum_probs=70.6
Q ss_pred ccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCc--EEEEECCCCceEEEEeccCCCEEEEEECCCC
Q 000743 373 KVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCS--IRIWDLGSGNLITVMHHHVAPVRQIILSPPQ 450 (1313)
Q Consensus 373 dv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~Dgt--IrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~ 450 (1313)
|..||..+..|..+.+.-..+-|...--..|| ..+|..+..|+. +.+-|+.+++..+--.+-........++|+
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG---~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~- 91 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDG---RKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPD- 91 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS----EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TT-
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCC---CEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecC-
Confidence 55777777777665544333433211012455 456666666664 556677788765544322222224556676
Q ss_pred CCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCcEEEEEc--CCCCEEEEEecCCCCCCCC--------------
Q 000743 451 TEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWD--CPRGYIACLCRDHSRTSDA-------------- 514 (1313)
Q Consensus 451 ~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~sVafs--Pdg~~Latgs~DlsGssD~-------------- 514 (1313)
++.++-...++.++-.|+++++....+......+-...|. .++.. ++|.+- --.|.
T Consensus 92 -----~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~-~~g~e~--~~~d~~~l~~~~~f~e~~~ 163 (386)
T PF14583_consen 92 -----DRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTK-LVGIEI--SREDWKPLTKWKGFREFYE 163 (386)
T ss_dssp -----SSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSE-EEEEEE--EGGG-----SHHHHHHHHH
T ss_pred -----CCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccE-EEEEEE--eehhccCccccHHHHHHHh
Confidence 4666666677899999999988766666566666556664 34444 434432 11110
Q ss_pred ---CCEEEEEECCCCcEEEEEe
Q 000743 515 ---VDVLFIWDVKTGARERVLR 533 (1313)
Q Consensus 515 ---DgtIrVWDlrTG~lv~~L~ 533 (1313)
...|.--|+++|+..-.+.
T Consensus 164 a~p~~~i~~idl~tG~~~~v~~ 185 (386)
T PF14583_consen 164 ARPHCRIFTIDLKTGERKVVFE 185 (386)
T ss_dssp C---EEEEEEETTT--EEEEEE
T ss_pred hCCCceEEEEECCCCceeEEEe
Confidence 1456677889988755554
No 435
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=24.15 E-value=6.5e+02 Score=30.26 Aligned_cols=59 Identities=10% Similarity=0.084 Sum_probs=37.2
Q ss_pred CCCEEEEEECCCCCCCCCCCEEEEEeCC-------------------CeEEEEECCCCcEEEEecCCCCCcEEEEEcCCC
Q 000743 438 VAPVRQIILSPPQTEHPWSDCFLSVGED-------------------FSVALASLETLRVERMFPGHPNYPAKVVWDCPR 498 (1313)
Q Consensus 438 ~~~V~sV~fsPd~~~~~~g~~LaSgS~D-------------------gtV~LWDL~t~~~l~~l~gH~~~V~sVafsPdg 498 (1313)
....+.+.|.|+ |.+.++.+.. +.|.-+|..+++......++. ....++|+|+|
T Consensus 123 ~~~~~~l~~gpD------G~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~r-np~Gl~~d~~G 195 (367)
T TIGR02604 123 HHSLNSLAWGPD------GWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQ-NPYGHSVDSWG 195 (367)
T ss_pred cccccCceECCC------CCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcC-CCccceECCCC
Confidence 345788999998 6666655521 345555555544433334443 45688999998
Q ss_pred CEEEE
Q 000743 499 GYIAC 503 (1313)
Q Consensus 499 ~~Lat 503 (1313)
+++++
T Consensus 196 ~l~~t 200 (367)
T TIGR02604 196 DVFFC 200 (367)
T ss_pred CEEEE
Confidence 88765
No 436
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=22.39 E-value=86 Score=40.20 Aligned_cols=52 Identities=29% Similarity=0.355 Sum_probs=46.0
Q ss_pred CceEEEEECcCcceEEEEecCCCCCCCCCCCcccccceEEEEECCCCCeEEEEecCCceEEEEEc
Q 000743 1153 KASIRVYDMQSVTKIKVLDASGPPGLPRESDSVATTVISALIFSPDGEGLVAFSEHGLMIRWWSL 1217 (1313)
Q Consensus 1153 ~g~i~iydl~t~~k~~~l~~h~~~~~~~~~~~~~~~~i~a~~fs~dG~~l~~~s~~~~~~~~w~~ 1217 (1313)
+..+++=|+-+-.-+.-|-+| +.+|+|++|.+.|-.||+-+.++..|-++.+
T Consensus 294 ~~~vivkdf~S~a~i~QfkAh-------------kspiSaLcfdqsgsllViasi~g~nVnvfRi 345 (788)
T KOG2109|consen 294 NNLVIVKDFDSFADIRQFKAH-------------KSPISALCFDQSGSLLVIASITGRNVNVFRI 345 (788)
T ss_pred cceEEeecccchhhhhheeee-------------cCcccccccccCceEEEEEeeccceeeeEEe
Confidence 446888888887777888898 9999999999999999999999999988865
No 437
>PRK10115 protease 2; Provisional
Probab=22.31 E-value=1.9e+03 Score=28.98 Aligned_cols=93 Identities=13% Similarity=0.167 Sum_probs=54.1
Q ss_pred CcEEEEECCCCceEEEEeccCCCEEEEEECCCCCCCCCCC-EEEEEeCC-----CeEEEEECCCC--cEEEEecCCCCCc
Q 000743 418 CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSD-CFLSVGED-----FSVALASLETL--RVERMFPGHPNYP 489 (1313)
Q Consensus 418 gtIrVWDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~-~LaSgS~D-----gtV~LWDL~t~--~~l~~l~gH~~~V 489 (1313)
.+|++-|+.+|+.+........ ..+.|.++ ++ ++.+.-.+ ..|..+++.++ +-...+.......
T Consensus 153 ~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D------~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~ 224 (686)
T PRK10115 153 YGIRFRNLETGNWYPELLDNVE--PSFVWAND------SWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTF 224 (686)
T ss_pred EEEEEEECCCCCCCCccccCcc--eEEEEeeC------CCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCE
Confidence 3688999998874322211222 46899988 44 44443322 36788888877 3334444333333
Q ss_pred E-EEEEcCCCCEEEEEecCCCCCCCCCCEEEEEEC
Q 000743 490 A-KVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 523 (1313)
Q Consensus 490 ~-sVafsPdg~~Latgs~DlsGssD~DgtIrVWDl 523 (1313)
. .+..+.++.+++..+.. ..++.+++|+.
T Consensus 225 ~~~~~~s~d~~~l~i~~~~-----~~~~~~~l~~~ 254 (686)
T PRK10115 225 YVSLHKTTSKHYVVIHLAS-----ATTSEVLLLDA 254 (686)
T ss_pred EEEEEEcCCCCEEEEEEEC-----CccccEEEEEC
Confidence 3 33334488887765543 12368999985
No 438
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.63 E-value=3e+02 Score=37.66 Aligned_cols=144 Identities=19% Similarity=0.342 Sum_probs=81.2
Q ss_pred HHHHHHHHHHcc-CcchHHHHHHHHHhhhhhcccccccccchh-hhhchheeeecccCCCCCcCCCCCCcHHHHHHHHhh
Q 000743 962 VVQPLIKLVMAT-NEKYSSTAAELLAEGMESTWKTCIGFEIPR-LIGDIFFQIECVSNSSANLAGQHPAVPASIRETLVG 1039 (1313)
Q Consensus 962 ~~~~l~~ll~~~-~~~~r~~AieLl~rGf~~~W~~~i~~dv~~-ll~~~~~~i~~~~~~~~~~~~~~~~~~~~ar~al~~ 1039 (1313)
+...|.+++... ++..|..|+=|+.|=+.++|+. |+.|+-. +...++ .+.. .+...+.||++=.
T Consensus 37 ~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~-l~~e~~~siks~lL---~~~~----------~E~~~~vr~k~~d 102 (1075)
T KOG2171|consen 37 LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSR-LSAEVQQSIKSSLL---EIIQ----------SETEPSVRHKLAD 102 (1075)
T ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhc-CCHHHHHHHHHHHH---HHHH----------hccchHHHHHHHH
Confidence 334555555544 6678999999998888778875 4444444 222221 1221 1111234444411
Q ss_pred cccccccccchhH----HHHHHHHHhhhccCCChhhh-hhHHHHHHHHhcChhhHhhcHHHHHHHhhhccC-CCCchhhh
Q 000743 1040 ILLPSLAMADILG----FLTVVESQIWSTASDSPVHL-VSIMTIIRVVRGSPRNVAQHLDKVVNFILQTMD-PGNSVMRK 1113 (1313)
Q Consensus 1040 ~~~~~ia~~~~~~----fi~~i~~~i~~~~~~~~~~~-~~l~~l~~~i~~~p~~~~~~l~~v~~~vl~~lD-p~~~~~R~ 1113 (1313)
....||+.+.+. .+..| +..+++.+++.+ .++..+-.+.+-.+..+.+|++.+.-.+.+||. |+.+ .|-
T Consensus 103 -viAeia~~~l~e~WPell~~L---~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~-vr~ 177 (1075)
T KOG2171|consen 103 -VIAEIARNDLPEKWPELLQFL---FQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSP-VRV 177 (1075)
T ss_pred -HHHHHHHhccccchHHHHHHH---HHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcch-HHH
Confidence 113345544443 23222 223455555554 344444446777788888999999999999996 7776 786
Q ss_pred hhhhhHHHHHH
Q 000743 1114 TCLHTSMAALK 1124 (1313)
Q Consensus 1114 ~~~~~~t~~l~ 1124 (1313)
+-++.......
T Consensus 178 ~a~rA~~a~~~ 188 (1075)
T KOG2171|consen 178 AAVRALGAFAE 188 (1075)
T ss_pred HHHHHHHHHHH
Confidence 55554444433
No 439
>TIGR03630 arch_S17P archaeal ribosomal protein S17P. This model describes exclusively the archaeal ribosomal protein S17P. It excludes homologous ribosomal proteins S11 from eukaryotes and S17 from bacteria.
Probab=21.41 E-value=93 Score=31.02 Aligned_cols=31 Identities=26% Similarity=0.319 Sum_probs=25.8
Q ss_pred eecccccccccceEEEEeeccccceeEEEEEe
Q 000743 23 VFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVD 54 (1313)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (1313)
=|||+|+|---.+.++|.+ .-+++--++.++
T Consensus 18 pf~g~l~irgk~l~G~VvS-~Km~KTivV~V~ 48 (102)
T TIGR03630 18 PFHGHLKVRGQILEGVVVS-DKMNKTVVVERE 48 (102)
T ss_pred CccceeeeeeEEEEEEEEe-cCCCceEEEEEE
Confidence 3999999999999999988 677777666665
No 440
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.56 E-value=1.2e+03 Score=27.83 Aligned_cols=109 Identities=13% Similarity=0.028 Sum_probs=68.2
Q ss_pred ecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEECCCCceEEEEeccC-CCEEEEEECCCCCCCCCCCEEEEE
Q 000743 384 LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHV-APVRQIILSPPQTEHPWSDCFLSV 462 (1313)
Q Consensus 384 ~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrVWDl~tg~~l~t~~gH~-~~V~sV~fsPd~~~~~~g~~LaSg 462 (1313)
.|-+.-|.++.|+| +.+.|++-.....-.||=...|+.+.++.-.. +.-..+.+.-+ |++.++-
T Consensus 82 ~g~~~nvS~LTynp---------~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~------n~fvi~d 146 (316)
T COG3204 82 LGETANVSSLTYNP---------DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGG------NQFVIVD 146 (316)
T ss_pred ccccccccceeeCC---------CcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecC------CEEEEEe
Confidence 35455599999996 23677777777788888888899988875211 12233444444 4555555
Q ss_pred eCCCeEEEEECCCCcEEE----------EecCCCCCcEEEEEcCCCCEEEEEecC
Q 000743 463 GEDFSVALASLETLRVER----------MFPGHPNYPAKVVWDCPRGYIACLCRD 507 (1313)
Q Consensus 463 S~DgtV~LWDL~t~~~l~----------~l~gH~~~V~sVafsPdg~~Latgs~D 507 (1313)
-.|+.+.++.+.....+. .....+.....++|+|.+..+..+=+-
T Consensus 147 ER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr 201 (316)
T COG3204 147 ERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKER 201 (316)
T ss_pred hhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEcc
Confidence 567777777665442211 111113456799999988877765443
No 441
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=20.50 E-value=1.4e+02 Score=39.38 Aligned_cols=138 Identities=17% Similarity=0.163 Sum_probs=79.1
Q ss_pred EEEEEcCCcEEEEEeeccccCCCCCCccccCCceEEEEEecCCccEEEEEEeccccCCCCCccCcEEEEEeCCCcEEE--
Q 000743 345 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRI-- 422 (1313)
Q Consensus 345 LvsGs~DGsI~I~~wdll~~~~~~~~~wdv~tg~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LaSGS~DgtIrV-- 422 (1313)
+..|+.+|+|.++.-.. +............-...|.++.+++ .-+..|..||++-.
T Consensus 550 ic~gtq~ssisissss~-----------~s~ke~~~~~~spe~~~v~~l~~ss-----------~Slgagl~dgt~a~y~ 607 (925)
T KOG3522|consen 550 ICLGTQTSSISISSSSL-----------DSIKEVTSEPPSPEHESVKLLLFSS-----------GSLGAGLIDGTLAVYG 607 (925)
T ss_pred ccccCccceeEEeeccC-----------CcccceeccCCCCchhhhhhhhccc-----------cccccCccCCcccccc
Confidence 67788899998843210 0011011111222234566776654 12333334443322
Q ss_pred ------EECCCCceEEEEeccCCCEEEEEECCCCCCCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC---CCCcEEEE
Q 000743 423 ------WDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGH---PNYPAKVV 493 (1313)
Q Consensus 423 ------WDl~tg~~l~t~~gH~~~V~sV~fsPd~~~~~~g~~LaSgS~DgtV~LWDL~t~~~l~~l~gH---~~~V~sVa 493 (1313)
||.. +-..+..-..+|++.++..+ ++-++.||.|.++...+.........| ...|+++.
T Consensus 608 rap~gSwd~e---p~~~~~~g~lPvrsla~~ed---------~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~ 675 (925)
T KOG3522|consen 608 RAPSGSWDGE---PNISIPTGSLPVRSLAFQED---------FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHML 675 (925)
T ss_pred CCCCCCCCCC---CccccccCCccccchhhhhc---------eeeeecCCceEEEechhccccchhHHHHhhcceEEEEE
Confidence 6654 22233334568888888766 677888999999998876665555444 34688888
Q ss_pred EcCCCCEEEEEecCCCCCCCCCCEEEEEECCC
Q 000743 494 WDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 525 (1313)
Q Consensus 494 fsPdg~~Latgs~DlsGssD~DgtIrVWDlrT 525 (1313)
...++-+++-.+- .+++.++.+|
T Consensus 676 ~~~~gVwvafasG---------~~~rlfhtet 698 (925)
T KOG3522|consen 676 YLDNGVWVAFASG---------DEERLFHTET 698 (925)
T ss_pred eeCCceEEEEcCC---------CEEEEecccc
Confidence 8888777765332 2666665444
No 442
>KOG4305 consensus RhoGEF GTPase [Signal transduction mechanisms]
Probab=20.12 E-value=1.2e+02 Score=41.08 Aligned_cols=54 Identities=20% Similarity=0.240 Sum_probs=42.4
Q ss_pred ceEEeeccccccCCceEEEEECcCcceEEEEecCCCCCCCC--CCCcccccceEEEEECCCCC
Q 000743 1140 TKLAVGDAIGDIKKASIRVYDMQSVTKIKVLDASGPPGLPR--ESDSVATTVISALIFSPDGE 1200 (1313)
Q Consensus 1140 qrlAVG~~~~~~~~g~i~iydl~t~~k~~~l~~h~~~~~~~--~~~~~~~~~i~a~~fs~dG~ 1200 (1313)
--||+|.. -|-|||++|+.-++++.||+-++++. ++-.....-|-.+.+-++|-
T Consensus 964 yiia~~~~-------fIeI~~~~t~eli~~i~~~~Ir~~~~~~~~l~~~~~~~~~~~~~~~~~ 1019 (1029)
T KOG4305|consen 964 YIIAFGDN-------FIEIRDLETGELIQIILGQNIRLLTSGLGPLLHGGKIIYYCYHPPDGD 1019 (1029)
T ss_pred eEEEecCc-------eEEEEecccceeeEEeeccceeEeecCcccccCCCeEEEEEecCcccc
Confidence 35788866 89999999999999999999888887 44345556677777777764
Done!