Query 000743
Match_columns 1313
No_of_seqs 566 out of 4303
Neff 6.0
Searched_HMMs 29240
Date Tue Mar 26 15:53:42 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000743.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_516-520//hhsearch_pdb/000743hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 1.0 1 1 224.0 35.8 192 319-546 185-390 (410)
2 4gqb_B Methylosome protein 50; 1.0 1 1 223.2 37.0 292 219-583 32-330 (344)
3 3ow8_A WD repeat-containing pr 1.0 1 1 219.8 33.7 189 339-582 129-319 (321)
4 3iz6_a 40S ribosomal protein R 1.0 1 1 219.4 29.0 209 319-584 150-375 (380)
5 1nr0_A Actin interacting prote 1.0 1 1 219.2 41.3 203 319-584 140-355 (611)
6 1got_B GT-beta; complex (GTP-b 1.0 1 1 217.9 37.6 203 319-581 136-340 (340)
7 4g56_B MGC81050 protein; prote 1.0 1 1 216.3 34.0 295 217-584 42-343 (357)
8 2pbi_B Guanine nucleotide-bind 1.0 1 1 215.4 37.1 206 319-581 147-354 (354)
9 1vyh_C Platelet-activating fac 1.0 1 1 215.3 33.7 186 319-546 101-286 (410)
10 4gqb_B Methylosome protein 50; 1.0 1 1 213.8 31.9 210 321-584 77-289 (344)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=1.00 E-value=1 Score=223.96 Aligned_cols=192 Identities=20% Similarity=0.250 Sum_probs=103.6
Q ss_pred CEECCCCCCEEEEEEEEECCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECC
Q ss_conf 40011279408997542035435988999996993999993046557999985345875078998347866899998104
Q 000743 319 RDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRM 398 (1313)
Q Consensus 319 ~~~l~gH~~~Vtss~~Is~~~fsP~~Lv~Gs~DGsI~I~~wdll~~~~~~~~~wdv~s~~~~~~L~GH~~~V~sLafsP~ 398 (1313)
...+.+|...|++..+.++.. .+++|+.|+.|++ |+ ..++.+...+.+|...|.++.++
T Consensus 185 ~~~~~~h~~~V~~v~~~p~~~----~l~s~s~D~~i~~--wd-------------~~~~~~~~~~~~h~~~v~~~~~~-- 243 (410)
T 1vyh_C 185 IRTMHGHDHNVSSVSIMPNGD----HIVSASRDKTIKM--WE-------------VQTGYCVKTFTGHREWVRMVRPN-- 243 (410)
T ss_dssp EECCCCCSSCEEEEEECSSSS----EEEEEETTSEEEE--EE-------------TTTCCEEEEEECCSSCEEEEEEC--
T ss_pred EEEECCCCCCEEEEEEECCCC----EEEEEECCCEEEE--EE-------------CCCCCEEEEEECCCCCEEEEEEC--
T ss_conf 699828999778999967999----9999968996999--98-------------99994899992788628999998--
Q ss_pred CCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCC--------------CCCCCEEEEEEC
Q ss_conf 668878766859999958993999979999459997016877899998999999--------------999988999948
Q 000743 399 VGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTE--------------HPWSDCFLSVGE 464 (1313)
Q Consensus 399 ~s~pDGr~~~~~LvSGS~DgtIrIWDl~tg~~l~tl~gH~~~V~sI~fsPd~~~--------------~~~g~~IvSgS~ 464 (1313)
++| .++++|+.|++|++||+.++++...+.+|...|.++.|+|+... ...+.++++++.
T Consensus 244 ---~~g----~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~ 316 (410)
T 1vyh_C 244 ---QDG----TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 316 (410)
T ss_dssp ---TTS----SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET
T ss_pred ---CCC----CEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCCCCHHHHCCCCCCCCCCCCCEEEEEEC
T ss_conf ---999----9999991899099998989743667337874589999858655431012125555566788889999938
Q ss_pred CCEEEEEECCCCCEEEEECCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEE
Q ss_conf 98099997899827799427999938999949999999985279877799987999979999189998188986457766
Q 000743 465 DFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHF 544 (1313)
Q Consensus 465 DgtV~LWDL~t~~~l~~l~gH~~~V~~IafsPdg~~Lisgs~DlsgssD~DgtIrIWDlrTg~lvr~L~GH~a~Vi~~~~ 544 (1313)
|++|++||+++++++..+.+|...|++++|+|++.++++++.| ++|++||++++++++++.+|...+..+.|
T Consensus 317 D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D--------~~i~vwd~~~~~~~~~~~~h~~~v~~l~~ 388 (410)
T 1vyh_C 317 DKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADD--------KTLRVWDYKNKRCMKTLNAHEHFVTSLDF 388 (410)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETT--------TEEEEECCTTSCCCEEEECCSSCEEEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECC--------CEEEEEECCCCCEEEEECCCCCCEEEEEE
T ss_conf 9849999889996699997788858999994998999999597--------92999989999068998477786899998
Q ss_pred EC
Q ss_conf 21
Q 000743 545 CK 546 (1313)
Q Consensus 545 c~ 546 (1313)
++
T Consensus 389 ~~ 390 (410)
T 1vyh_C 389 HK 390 (410)
T ss_dssp CS
T ss_pred CC
T ss_conf 28
No 2
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=1.00 E-value=1 Score=223.23 Aligned_cols=292 Identities=15% Similarity=0.090 Sum_probs=191.8
Q ss_pred EEEEEEEEEEEEEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCEEEEEE-CCC-EEEEEEECC--EEEECCCCEEEEE
Q ss_conf 199998630149998432056777663251999980125899995028930-597-045423110--1110799805530
Q 000743 219 SIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVG-EGF-SFVDWVNNS--TFLDENEGSCTGK 294 (1313)
Q Consensus 219 ~i~~~q~~~~lvri~s~c~d~~~p~~W~p~vtVWsl~~~~~~~~~q~~~~g-~~~-~~~dWiss~--l~~~~~dGi~Iwk 294 (1313)
.+..+.|...+-.+.+.. +.....|+..+.+|.........+....... +.. .-+.|..+. +.......+++|+
T Consensus 32 ~v~~~~fs~dG~~l~~~s--d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd 109 (344)
T 4gqb_B 32 QLEAARYRSDGALLLGAS--SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVELWE 109 (344)
T ss_dssp EEEEEEECTTSCEEEEEE--CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEETTSEEEEEE
T ss_pred CEEEEEECCCCCEEEEEE--CCCEEEEECEEEEECCCCCCCCCCEEEEEECCCCCEEEEEEECCCEEEEEECCCEEEEEE
T ss_conf 888999989999999990--895687623056503655567765466660367987899992998299998979899996
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEEEEEEEEECCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCC
Q ss_conf 00365666655544456777899840011279408997542035435988999996993999993046557999985345
Q 000743 295 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 374 (1313)
Q Consensus 295 ~~~ss~~~~i~~ls~~~s~~~~~~~~~l~gH~~~Vtss~~Is~~~fsP~~Lv~Gs~DGsI~I~~wdll~~~~~~~~~wdv 374 (1313)
+....... .....+.+|...|+++.+.++.. .+++|+.||.|++ |+ +
T Consensus 110 ~~~~~~~~--------------~~~~~~~~H~~~V~~v~~spdg~----~l~sgs~d~~i~i--wd-------------~ 156 (344)
T 4gqb_B 110 LDENETLI--------------VSKFCKYEHDDIVSTVSVLSSGT----QAVSGSKDICIKV--WD-------------L 156 (344)
T ss_dssp ECTTSSCE--------------EEEEEEECCSSCEEEEEECTTSS----EEEEEETTSCEEE--EE-------------T
T ss_pred CCCCCCEE--------------EEECCCCCCCCCEEEEEECCCCC----EEEEEECCCEEEE--EE-------------C
T ss_conf 53887435--------------86013467899789999989989----9999949893999--99-------------9
Q ss_pred CCCEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEE--CCCCCEEEEEECCCCCC
Q ss_conf 8750789983478668999981046688787668599999589939999799994599970--16877899998999999
Q 000743 375 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMH--HHVAPVRQIILSPPQTE 452 (1313)
Q Consensus 375 ~s~~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LvSGS~DgtIrIWDl~tg~~l~tl~--gH~~~V~sI~fsPd~~~ 452 (1313)
.+++++..+.+|.+.|+++.|+| ++ ..+++||+.|++|++||++++++...+. .|...+++++|+|++
T Consensus 157 ~~~~~~~~~~~h~~~V~~~~~~~-----~~---~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~-- 226 (344)
T 4gqb_B 157 AQQVVLSSYRAHAAQVTCVAASP-----HK---DSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQ-- 226 (344)
T ss_dssp TTTEEEEEECCCSSCEEEEEECS-----SC---TTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSC--
T ss_pred CCCCEEEEECCCCCCEEEEEECC-----CC---CCCEEEECCCCCCCCCCCCCCCEEEEEECCEEECCCEEEEECCCC--
T ss_conf 99969999757688557888658-----99---974011034435510234455200111010000121235661799--
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCEEEEECCCC-CEEEEEECCCCCCCCCCCEEEEEECCCCCEEEE
Q ss_conf 9999889999489809999789982779942799993899994999-999998527987779998799997999918999
Q 000743 453 HPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPR-GYIACLCRDHSRTSDAVDVLFIWDVKTGARERV 531 (1313)
Q Consensus 453 ~~~g~~IvSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~~IafsPdg-~~Lisgs~DlsgssD~DgtIrIWDlrTg~lvr~ 531 (1313)
++++++++.|++|++||+++++++..+.+|...|++++|+|++ .+|++++.| ++|++||++++++. .
T Consensus 227 ---~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D--------~~i~vwd~~~~~~~-~ 294 (344)
T 4gqb_B 227 ---SEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSED--------CSLAVLDSSLSELF-R 294 (344)
T ss_dssp ---TTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETT--------SCEEEECTTCCEEE-E
T ss_pred ---CCCEEEECCCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECC--------CEEEEEECCCCCEE-E
T ss_conf ---96058861587189898999959899837889988999926999099999389--------94999999999699-9
Q ss_pred EECCCCCEEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 8188986457766216665201123104882124686453489827988387
Q 000743 532 LRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 583 (1313)
Q Consensus 532 L~GH~a~Vi~~~~c~~~s~~~vSGS~l~g~~~~S~~lvsvs~D~tir~Wdl~ 583 (1313)
+.||.+.|..+.|++......++++. |+++++|++.
T Consensus 295 ~~~H~~~V~~v~~sp~~~~llas~s~----------------D~~v~~w~v~ 330 (344)
T 4gqb_B 295 SQAHRDFVRDATWSPLNHSLLTTVGW----------------DHQVVHHVVP 330 (344)
T ss_dssp ECCCSSCEEEEEECSSSTTEEEEEET----------------TSCEEEEECC
T ss_pred ECCCCCCEEEEEEECCCCEEEEEECC----------------CCEEEEEECC
T ss_conf 72889977899991799969999937----------------9959999899
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=219.84 Aligned_cols=189 Identities=19% Similarity=0.324 Sum_probs=142.7
Q ss_pred CCCCC--EEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEEC
Q ss_conf 43598--8999996993999993046557999985345875078998347866899998104668878766859999958
Q 000743 339 FYAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSM 416 (1313)
Q Consensus 339 ~fsP~--~Lv~Gs~DGsI~I~~wdll~~~~~~~~~wdv~s~~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LvSGS~ 416 (1313)
.|+|+ .+++|+.||.+++ |+ ..+++....+.+|...|.+++|+ ||| .+|++|+.
T Consensus 129 ~~spdg~~l~~g~~dg~v~i--~~-------------~~~~~~~~~~~~~~~~v~~~~~s-----pdg----~~lasg~~ 184 (321)
T 3ow8_A 129 AFSPDSQYLATGTHVGKVNI--FG-------------VESGKKEYSLDTRGKFILSIAYS-----PDG----KYLASGAI 184 (321)
T ss_dssp EECTTSSEEEEECTTSEEEE--EE-------------TTTCSEEEEEECSSSCEEEEEEC-----TTS----SEEEEEET
T ss_pred EECCCCCEEEEECCCCCEEE--EE-------------CCCCCEEEEECCCCCEEEEEEEC-----CCC----CEEEEECC
T ss_conf 99999998999838991999--98-------------67994667743899429999998-----999----99999928
Q ss_pred CCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCEEEEECC
Q ss_conf 99399997999945999701687789999899999999998899994898099997899827799427999938999949
Q 000743 417 DCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDC 496 (1313)
Q Consensus 417 DgtIrIWDl~tg~~l~tl~gH~~~V~sI~fsPd~~~~~~g~~IvSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~~IafsP 496 (1313)
|++|++||+.+++++.++.+|..+|++++|+|+ ++++++++.|++|++||++++++...+.+|...|.+++|+|
T Consensus 185 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp 258 (321)
T 3ow8_A 185 DGIINIFDIATGKLLHTLEGHAMPIRSLTFSPD------SQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP 258 (321)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCCCEEEECTT------SCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECT
T ss_pred CCEEEEEECCCCCEEEEECCCCCCEEEEEECCC------CCEEEEECCCCEEEEEECCCCCEEEEECCCCCCEEEEEECC
T ss_conf 983999999999099998025896018999489------99899990998099987899632589868888268999979
Q ss_pred CCCEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999998527987779998799997999918999818898645776621666520112310488212468645348982
Q 000743 497 PRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGT 576 (1313)
Q Consensus 497 dg~~Lisgs~DlsgssD~DgtIrIWDlrTg~lvr~L~GH~a~Vi~~~~c~~~s~~~vSGS~l~g~~~~S~~lvsvs~D~t 576 (1313)
++.++++++.| ++|++||++++++++++.+|...+..+.|.+. ...+++++ .|++
T Consensus 259 ~~~~l~s~s~D--------~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~-g~~l~s~~----------------~d~~ 313 (321)
T 3ow8_A 259 DDTHFVSSSSD--------KSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGN-GSKIVSVG----------------DDQE 313 (321)
T ss_dssp TSSEEEEEETT--------SCEEEEETTTTEEEEEECCCSSCEEEEEECTT-SSEEEEEE----------------TTCC
T ss_pred CCCEEEEEECC--------CCEEEEECCCCEEEEEECCCCCCEEEEEECCC-CCEEEEEE----------------CCCE
T ss_conf 99989998189--------80999949998888898378773899999899-99999975----------------8980
Q ss_pred EEEEEC
Q ss_conf 798838
Q 000743 577 FRQSQI 582 (1313)
Q Consensus 577 ir~Wdl 582 (1313)
+++|+.
T Consensus 314 i~vwd~ 319 (321)
T 3ow8_A 314 IHIYDC 319 (321)
T ss_dssp EEEEEC
T ss_pred EEEEEC
T ss_conf 899957
No 4
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=1.00 E-value=1 Score=219.36 Aligned_cols=209 Identities=16% Similarity=0.253 Sum_probs=169.5
Q ss_pred CEECCCCCCEEEEEEEEECCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEE-----ECCCCCEEEE
Q ss_conf 40011279408997542035435988999996993999993046557999985345875078998-----3478668999
Q 000743 319 RDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYF-----LGHTGAVLCL 393 (1313)
Q Consensus 319 ~~~l~gH~~~Vtss~~Is~~~fsP~~Lv~Gs~DGsI~I~~wdll~~~~~~~~~wdv~s~~~~~~L-----~GH~~~V~sL 393 (1313)
...+.+|.+.|.++.+.+... ..+++|+.|+.|++ ||+ .++++...+ .+|...|.++
T Consensus 150 ~~~~~gh~~~v~~~~~~~~~~---~~l~s~s~D~~i~~--wd~-------------~~~~~~~~~~~~~~~~h~~~v~~~ 211 (380)
T 3iz6_a 150 SRVLTGHKGYASSCQYVPDQE---TRLITGSGDQTCVL--WDV-------------TTGQRISIFGSEFPSGHTADVLSL 211 (380)
T ss_dssp CCBCCCCSSCCCCCBCCSSSS---SCEEEECTTSCEEE--ECT-------------TTCCEEEEECCCSSSSCCSCEEEE
T ss_pred EEECCCCCCCEEEEEEECCCC---CEEEEECCCCCEEE--EEC-------------CCCCEEEEEECCCCCCCCCCEEEE
T ss_conf 264068975468999964899---78999779981999--986-------------779578996056678875676999
Q ss_pred EEECCCCCCCCCCCCCEEEEEECCCCEEEEECC-CCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEE
Q ss_conf 981046688787668599999589939999799-9945999701687789999899999999998899994898099997
Q 000743 394 AAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLG-SGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALAS 472 (1313)
Q Consensus 394 afsP~~s~pDGr~~~~~LvSGS~DgtIrIWDl~-tg~~l~tl~gH~~~V~sI~fsPd~~~~~~g~~IvSgS~DgtV~LWD 472 (1313)
.|+| +++ +++++|+.|++|++||++ .++++..+.+|.+.|++++|+|+ +..+++++.|++|++||
T Consensus 212 ~~~~----~~~----~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~------~~~l~s~s~D~~i~lwd 277 (380)
T 3iz6_a 212 SINS----LNA----NMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPD------GQRFGTGSDDGTCRLFD 277 (380)
T ss_dssp EECS----SSC----CEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTT------SSEEEEECSSSCEEEEE
T ss_pred EEEC----CCC----CEEEEEECCCEEEEEECCCCCCCEEEECCCCCCEEEEEEECC------CCEEEEECCCCEEEEEE
T ss_conf 9206----999----989999789869999788897346998874887579999169------99699983899699998
Q ss_pred CCCCCEEEEECCCCC-------CCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEE----ECCCCCEEE
Q ss_conf 899827799427999-------938999949999999985279877799987999979999189998----188986457
Q 000743 473 LETLRVERMFPGHPN-------YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL----RGTASHSMF 541 (1313)
Q Consensus 473 L~t~~~l~~l~gH~~-------~V~~IafsPdg~~Lisgs~DlsgssD~DgtIrIWDlrTg~lvr~L----~GH~a~Vi~ 541 (1313)
+++++++..+..+.. .+.+++|+|++.++++|+.| +.|++||..+++....+ .+|...+..
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d--------g~i~vwd~~~~~~~~~~~~~~~~h~~~v~~ 349 (380)
T 3iz6_a 278 MRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSN--------GDCYVWDTLLAEMVLNLGTLQNSHEGRISC 349 (380)
T ss_dssp TTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTT--------SCEEEEETTTCCEEEEECCSCSSCCCCCCE
T ss_pred CCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECC--------CCEEEEECCCCCEEEEEECCCCCCCCCEEE
T ss_conf 889968898615655566556863899988999989999799--------979999887781578970236777784579
Q ss_pred EEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 7662166652011231048821246864534898279883875
Q 000743 542 DHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 584 (1313)
Q Consensus 542 ~~~c~~~s~~~vSGS~l~g~~~~S~~lvsvs~D~tir~Wdl~~ 584 (1313)
+.|++. ...+++|+. |+++++|++..
T Consensus 350 l~~s~d-g~~l~sgs~----------------D~~i~iW~~~~ 375 (380)
T 3iz6_a 350 LGLSSD-GSALCTGSW----------------DKNLKIWAFSG 375 (380)
T ss_dssp EEECSS-SSEEEEECT----------------TSCEEEEECCS
T ss_pred EEECCC-CCEEEEEEC----------------CCCEEEEECCC
T ss_conf 998999-998999608----------------99889995378
No 5
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=219.15 Aligned_cols=203 Identities=16% Similarity=0.248 Sum_probs=155.5
Q ss_pred CEECCCCCCEEEEEEEEECCCCCCC---EEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEE
Q ss_conf 4001127940899754203543598---8999996993999993046557999985345875078998347866899998
Q 000743 319 RDDFVHKEKIVSSSMVISESFYAPY---AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAA 395 (1313)
Q Consensus 319 ~~~l~gH~~~Vtss~~Is~~~fsP~---~Lv~Gs~DGsI~I~~wdll~~~~~~~~~wdv~s~~~~~~L~GH~~~V~sLaf 395 (1313)
...+.+|...|++ ..|+|+ .+++|+.|+.|++ |+ ..++++...+.+|.+.|++++|
T Consensus 140 ~~~l~gh~~~v~~------v~f~p~~~~~l~s~s~D~~v~l--wd-------------~~~~~~~~~l~~H~~~V~~v~f 198 (611)
T 1nr0_A 140 NGNLTGQARAMNS------VDFKPSRPFRIISGSDDNTVAI--FE-------------GPPFKFKSTFGEHTKFVHSVRY 198 (611)
T ss_dssp CBCCCCCSSCEEE------EEECSSSSCEEEEEETTSCEEE--EE-------------TTTBEEEEEECCCSSCEEEEEE
T ss_pred CCEECCCCCCCEE------EEECCCCCEEEEEEECCCEEEE--EE-------------CCCCEEEEEECCCCCCEEEEEE
T ss_conf 6325478898369------9988999829999928980999--97-------------9997576652002571699999
Q ss_pred ECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEE-------CCCCCEEEEEECCCCCCCCCCCEEEEEECCCEE
Q ss_conf 1046688787668599999589939999799994599970-------168778999989999999999889999489809
Q 000743 396 HRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMH-------HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSV 468 (1313)
Q Consensus 396 sP~~s~pDGr~~~~~LvSGS~DgtIrIWDl~tg~~l~tl~-------gH~~~V~sI~fsPd~~~~~~g~~IvSgS~DgtV 468 (1313)
+ ||| ++|++|+.|++|++||+.+++++..+. +|.+.|++++|+|+ ++++++++.|++|
T Consensus 199 s-----pdg----~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spd------g~~l~s~s~D~~v 263 (611)
T 1nr0_A 199 N-----PDG----SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPD------GTKIASASADKTI 263 (611)
T ss_dssp C-----TTS----SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTT------SSEEEEEETTSEE
T ss_pred C-----CCC----CEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEECCC------CCEEEEEECCCEE
T ss_conf 7-----999----989999899919998899982866513664323566787899999799------9999999089809
Q ss_pred EEEECCCCCEEEEECCCC---CCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEE
Q ss_conf 999789982779942799---99389999499999999852798777999879999799991899981889864577662
Q 000743 469 ALASLETLRVERMFPGHP---NYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFC 545 (1313)
Q Consensus 469 ~LWDL~t~~~l~~l~gH~---~~V~~IafsPdg~~Lisgs~DlsgssD~DgtIrIWDlrTg~lvr~L~GH~a~Vi~~~~c 545 (1313)
++||+++++++..+..+. .....+.| ++..+++++.| +++++||.++++..+.+.||...+..+.|+
T Consensus 264 ~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d--------~~i~~~~~~~~~~~~~~~gh~~~v~~l~~s 333 (611)
T 1nr0_A 264 KIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISAN--------GFINFVNPELGSIDQVRYGHNKAITALSSS 333 (611)
T ss_dssp EEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETT--------CCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred EEEECCCCCEEEEECCCCCCCCEEEEEEE--CCCEEEEEECC--------CCEEEEECCCCCCCEEECCCCCCEEEEEEE
T ss_conf 99968887013440478876640689997--38879999589--------968999688997446983788888999991
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 166652011231048821246864534898279883875
Q 000743 546 KGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 584 (1313)
Q Consensus 546 ~~~s~~~vSGS~l~g~~~~S~~lvsvs~D~tir~Wdl~~ 584 (1313)
+. ...+++++. |+++++|++..
T Consensus 334 pd-g~~l~s~s~----------------D~~v~~Wd~~~ 355 (611)
T 1nr0_A 334 AD-GKTLFSADA----------------EGHINSWDIST 355 (611)
T ss_dssp TT-SSEEEEEET----------------TSCEEEEETTT
T ss_pred CC-CCEEEEEEC----------------CCCEEEEECCC
T ss_conf 89-998999958----------------98499997887
No 6
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=1.00 E-value=1 Score=217.86 Aligned_cols=203 Identities=19% Similarity=0.265 Sum_probs=172.0
Q ss_pred CEECCCCCCEEEEEEEEECCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECC
Q ss_conf 40011279408997542035435988999996993999993046557999985345875078998347866899998104
Q 000743 319 RDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRM 398 (1313)
Q Consensus 319 ~~~l~gH~~~Vtss~~Is~~~fsP~~Lv~Gs~DGsI~I~~wdll~~~~~~~~~wdv~s~~~~~~L~GH~~~V~sLafsP~ 398 (1313)
...+.+|...|+++.+.++. .+++++.||.|++ |+ ..++++...+.+|.+.|.+++|+
T Consensus 136 ~~~~~~h~~~v~~~~~~~~~-----~l~s~s~d~~i~~--wd-------------~~~~~~~~~~~~h~~~v~~~~~~-- 193 (340)
T 1got_B 136 SRELAGHTGYLSCCRFLDDN-----QIVTSSGDTTCAL--WD-------------IETGQQTTTFTGHTGDVMSLSLA-- 193 (340)
T ss_dssp EEEEECCSSCEEEEEEEETT-----EEEEEETTSCEEE--EE-------------TTTTEEEEEECCCSSCEEEEEEC--
T ss_pred EEEECCCCCCEEEEEECCCC-----CEEEEECCCCEEE--EE-------------CCCCCEEEEECCCCCCEEEEEEC--
T ss_conf 77844877638999987999-----6999989992999--98-------------99991889976999866899998--
Q ss_pred CCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCE
Q ss_conf 66887876685999995899399997999945999701687789999899999999998899994898099997899827
Q 000743 399 VGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRV 478 (1313)
Q Consensus 399 ~s~pDGr~~~~~LvSGS~DgtIrIWDl~tg~~l~tl~gH~~~V~sI~fsPd~~~~~~g~~IvSgS~DgtV~LWDL~t~~~ 478 (1313)
|+| .++++|+.|++|++||++++.+..++.+|...|++++|+|+ ++++++++.|++|++||++.++.
T Consensus 194 ---~~~----~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~------~~~l~s~s~d~~v~iwd~~~~~~ 260 (340)
T 1got_B 194 ---PDT----RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN------GNAFATGSDDATCRLFDLRADQE 260 (340)
T ss_dssp ---TTS----SEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTT------SSEEEEEETTSCEEEEETTTTEE
T ss_pred ---CCC----CEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCC------CCEEEEECCCCCEEEEECCCCCE
T ss_conf ---999----99999938993999778998167897487687799999499------99899974898199998899918
Q ss_pred EEEECCC--CCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCEEECC
Q ss_conf 7994279--99938999949999999985279877799987999979999189998188986457766216665201123
Q 000743 479 ERMFPGH--PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGS 556 (1313)
Q Consensus 479 l~~l~gH--~~~V~~IafsPdg~~Lisgs~DlsgssD~DgtIrIWDlrTg~lvr~L~GH~a~Vi~~~~c~~~s~~~vSGS 556 (1313)
+..+..+ ...+.+++|+|++.++++|+.| +.|++||+++++....+.||...+..+.|++. ...+++|+
T Consensus 261 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d--------~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~d-g~~l~s~s 331 (340)
T 1got_B 261 LMTYSHDNIICGITSVSFSKSGRLLLAGYDD--------FNCNVWDALKADRAGVLAGHDNRVSCLGVTDD-GMAVATGS 331 (340)
T ss_dssp EEEECCTTCCSCEEEEEECTTSSEEEEEETT--------SEEEEEETTTCCEEEEEECCSSCEEEEEECTT-SSCEEEEE
T ss_pred EEEECCCCCCCCEEEEEECCCCCEEEEECCC--------CEEEEEECCCCCEEEEEECCCCCEEEEEECCC-CCEEEEEC
T ss_conf 9997268852416999998999999997799--------90999884138386585057784889998299-99899972
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 1048821246864534898279883
Q 000743 557 VLNGNTSVSSLLLPIHEDGTFRQSQ 581 (1313)
Q Consensus 557 ~l~g~~~~S~~lvsvs~D~tir~Wd 581 (1313)
. |+++|+|+
T Consensus 332 ~----------------D~~i~iWd 340 (340)
T 1got_B 332 W----------------DSFLKIWN 340 (340)
T ss_dssp T----------------TSCEEEEC
T ss_pred C----------------CCCEEECC
T ss_conf 8----------------86189559
No 7
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=1.00 E-value=1 Score=216.30 Aligned_cols=295 Identities=14% Similarity=0.099 Sum_probs=211.2
Q ss_pred CEEEEEEEEEEEEEEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCEEEEEECCC--EEEEEEECC--EEEECCCCEEE
Q ss_conf 40199998630149998432056777663251999980125899995028930597--045423110--11107998055
Q 000743 217 KFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGF--SFVDWVNNS--TFLDENEGSCT 292 (1313)
Q Consensus 217 ~~~i~~~q~~~~lvri~s~c~d~~~p~~W~p~vtVWsl~~~~~~~~~q~~~~g~~~--~~~dWiss~--l~~~~~dGi~I 292 (1313)
...|..+.|..-+-.+.+...| ....|+..+.+|................++.. .-+.|..+. +.......+++
T Consensus 42 ~~~V~~v~fSpDG~~las~s~d--~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~l 119 (357)
T 4g56_B 42 EVQIGAVRYRRDGALLLAASSL--SSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVEL 119 (357)
T ss_dssp CSEEEEEEECSSSCEEEEEECS--SSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEE
T ss_pred CCCEEEEEECCCCCEEEEECCC--CCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCEEEEEECCCCCEEEEECCCEEEE
T ss_conf 0788999998999999998289--87132686999789998714058502478879879999968998999989998999
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEEEEEEEEECCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 30003656666555444567778998400112794089975420354359889999969939999930465579999853
Q 000743 293 GKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASL 372 (1313)
Q Consensus 293 wk~~~ss~~~~i~~ls~~~s~~~~~~~~~l~gH~~~Vtss~~Is~~~fsP~~Lv~Gs~DGsI~I~~wdll~~~~~~~~~w 372 (1313)
|++...... ........+|...|+++.+.++.. .+++|+.||.|++ |+
T Consensus 120 Wd~~~~~~~--------------~~~~~~~~~h~~~V~~v~~spdg~----~l~sgs~dg~v~i--wd------------ 167 (357)
T 4g56_B 120 WEILEKESL--------------LVNKFAKYEHDDIVKTLSVFSDGT----QAVSGGKDFSVKV--WD------------ 167 (357)
T ss_dssp C----------------------CCCCEEECCCSSCEEEEEECSSSS----EEEEEETTSCEEE--EE------------
T ss_pred EECCCCCEE--------------EEEEECCCCCCCCEEEEEECCCCC----EEEEEECCCEEEE--EE------------
T ss_conf 344566404--------------787421378889889999979989----9999969893999--98------------
Q ss_pred CCCCCEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEE--ECCCCCEEEEEECCCC
Q ss_conf 45875078998347866899998104668878766859999958993999979999459997--0168778999989999
Q 000743 373 KVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVM--HHHVAPVRQIILSPPQ 450 (1313)
Q Consensus 373 dv~s~~~~~~L~GH~~~V~sLafsP~~s~pDGr~~~~~LvSGS~DgtIrIWDl~tg~~l~tl--~gH~~~V~sI~fsPd~ 450 (1313)
..++++...+.+|.+.|++++|+| ++ +.++++++.|++|++||++++++...+ ..|...+++++|+|++
T Consensus 168 -~~~~~~~~~~~~h~~~v~~v~~s~-----~~---~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~ 238 (357)
T 4g56_B 168 -LSQKAVLKSYNAHSSEVNCVAACP-----GK---DTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEK 238 (357)
T ss_dssp -TTTTEEEEEECCCSSCEEEEEECT-----TC---SSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTS
T ss_pred -CCCCCEEEEECCCCCCEEEEEECC-----CC---CCEEEEECCCCCEEEEECCCCCEEEEEEECCCCCCCCCHHHHHCC
T ss_conf -999959999827789788999836-----88---722665505786388788999640123300233444211112135
Q ss_pred CCCCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCEEEEECCCC-CEEEEEECCCCCCCCCCCEEEEEECCCCCEE
Q ss_conf 999999889999489809999789982779942799993899994999-9999985279877799987999979999189
Q 000743 451 TEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPR-GYIACLCRDHSRTSDAVDVLFIWDVKTGARE 529 (1313)
Q Consensus 451 ~~~~~g~~IvSgS~DgtV~LWDL~t~~~l~~l~gH~~~V~~IafsPdg-~~Lisgs~DlsgssD~DgtIrIWDlrTg~lv 529 (1313)
+.++++++.|+.|++||+++++++..+.+|...|++++|+|++ .+|++++.| ++|++||+++++++
T Consensus 239 -----~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D--------~~i~iwd~~~~~~~ 305 (357)
T 4g56_B 239 -----DDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISED--------CTVAVLDADFSEVF 305 (357)
T ss_dssp -----TTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETT--------SCEEEECTTSCEEE
T ss_pred -----CCEEEEEECCCCEEEEECCCCCEEEEEECCCEEEEEEEECCCCCCEEEEEECC--------CEEEEEECCCCCEE
T ss_conf -----30599821354206898999958289935531387799768999899999589--------97999989999586
Q ss_pred EEEECCCCCEEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 9981889864577662166652011231048821246864534898279883875
Q 000743 530 RVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 584 (1313)
Q Consensus 530 r~L~GH~a~Vi~~~~c~~~s~~~vSGS~l~g~~~~S~~lvsvs~D~tir~Wdl~~ 584 (1313)
+.+ +|.+.|..+.|++......++++. |+++++|++..
T Consensus 306 ~~~-~H~~~V~~vafsP~d~~~l~s~s~----------------Dg~v~iW~~~~ 343 (357)
T 4g56_B 306 RDL-SHRDFVTGVAWSPLDHSKFTTVGW----------------DHKVLHHHLPS 343 (357)
T ss_dssp EEC-CCSSCEEEEEECSSSTTEEEEEET----------------TSCEEEEECC-
T ss_pred EEC-CCCCCEEEEEEECCCCCEEEEECC----------------CCEEEEEECCC
T ss_conf 978-899988999995899999999918----------------99599997799
No 8
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=1.00 E-value=1 Score=215.40 Aligned_cols=206 Identities=23% Similarity=0.326 Sum_probs=173.5
Q ss_pred CEECCCCCCEEEEEEEEECCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECC
Q ss_conf 40011279408997542035435988999996993999993046557999985345875078998347866899998104
Q 000743 319 RDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRM 398 (1313)
Q Consensus 319 ~~~l~gH~~~Vtss~~Is~~~fsP~~Lv~Gs~DGsI~I~~wdll~~~~~~~~~wdv~s~~~~~~L~GH~~~V~sLafsP~ 398 (1313)
...+.+|...|+++.+.++.. .+++++.||.|++ |+ +.++++...+.+|...|.++.++|.
T Consensus 147 ~~~~~~h~~~v~~~~~~~~~~----~l~t~s~D~~v~l--wd-------------~~~~~~~~~~~~h~~~v~~~~~~~~ 207 (354)
T 2pbi_B 147 KKSVAMHTNYLSACSFTNSDM----QILTASGDGTCAL--WD-------------VESGQLLQSFHGHGADVLCLDLAPS 207 (354)
T ss_dssp CEEEEECSSCEEEEEECSSSS----EEEEEETTSEEEE--EE-------------TTTCCEEEEEECCSSCEEEEEECCC
T ss_pred CEEEECCCCCEEEEEEECCCC----EEEEEECCCCEEE--EE-------------CCCCEEEEEECCCCCCEEEEEEEEC
T ss_conf 116306678478999968999----9999918995899--76-------------7778199999278998699998757
Q ss_pred CCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCE
Q ss_conf 66887876685999995899399997999945999701687789999899999999998899994898099997899827
Q 000743 399 VGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRV 478 (1313)
Q Consensus 399 ~s~pDGr~~~~~LvSGS~DgtIrIWDl~tg~~l~tl~gH~~~V~sI~fsPd~~~~~~g~~IvSgS~DgtV~LWDL~t~~~ 478 (1313)
++| .++++|+.|++|++||+++++++..+.+|...|++++|+|+ +..+++++.|++|++||++..+.
T Consensus 208 ---~~g----~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~------~~~l~s~s~D~~v~lwd~~~~~~ 274 (354)
T 2pbi_B 208 ---ETG----NTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPS------GDAFASGSDDATCRLYDLRADRE 274 (354)
T ss_dssp ---SSC----CEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT------SSEEEEEETTSCEEEEETTTTEE
T ss_pred ---CCC----CEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECC------CCEEEEEECCCEEEEEECCCCCE
T ss_conf ---999----99999947995999988899277983588788179999589------99899996998199998889967
Q ss_pred EEEECCCC--CCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCEEECC
Q ss_conf 79942799--9938999949999999985279877799987999979999189998188986457766216665201123
Q 000743 479 ERMFPGHP--NYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGS 556 (1313)
Q Consensus 479 l~~l~gH~--~~V~~IafsPdg~~Lisgs~DlsgssD~DgtIrIWDlrTg~lvr~L~GH~a~Vi~~~~c~~~s~~~vSGS 556 (1313)
+..+..+. ..+.+++|+|++.++++++.| ++|++||+++++.+..+.||...+..+.|++. ...+++|+
T Consensus 275 ~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d--------~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spd-g~~l~sgs 345 (354)
T 2pbi_B 275 VAIYSKESIIFGASSVDFSLSGRLLFAGYND--------YTINVWDVLKGSRVSILFGHENRVSTLRVSPD-GTAFCSGS 345 (354)
T ss_dssp EEEECCTTCCSCEEEEEECTTSSEEEEEETT--------SCEEEEETTTCSEEEEECCCSSCEEEEEECTT-SSCEEEEE
T ss_pred EEEECCCCCCCCEEEEEEECCCCEEEEEECC--------CCEEEEECCCCCEEEEEECCCCCEEEEEECCC-CCEEEEEC
T ss_conf 8887478740345599994799999999789--------92999989889557799878995789999899-99999982
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 1048821246864534898279883
Q 000743 557 VLNGNTSVSSLLLPIHEDGTFRQSQ 581 (1313)
Q Consensus 557 ~l~g~~~~S~~lvsvs~D~tir~Wd 581 (1313)
. |+++++|+
T Consensus 346 ~----------------D~~v~vW~ 354 (354)
T 2pbi_B 346 W----------------DHTLRVWA 354 (354)
T ss_dssp T----------------TSEEEEEC
T ss_pred C----------------CCCEEECC
T ss_conf 8----------------88889619
No 9
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=1.00 E-value=1 Score=215.29 Aligned_cols=186 Identities=21% Similarity=0.263 Sum_probs=97.3
Q ss_pred CEECCCCCCEEEEEEEEECCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECC
Q ss_conf 40011279408997542035435988999996993999993046557999985345875078998347866899998104
Q 000743 319 RDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRM 398 (1313)
Q Consensus 319 ~~~l~gH~~~Vtss~~Is~~~fsP~~Lv~Gs~DGsI~I~~wdll~~~~~~~~~wdv~s~~~~~~L~GH~~~V~sLafsP~ 398 (1313)
...+.+|...|++..+.++.. .+++|+.||.|++ |+ ..+++....+.+|.+.|++++|+
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~----~l~s~s~Dg~i~v--wd-------------~~~~~~~~~l~~h~~~V~~v~~~-- 159 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFS----VMVSASEDATIKV--WD-------------YETGDFERTLKGHTDSVQDISFD-- 159 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSS----EEEEEESSSCEEE--EE-------------TTTCCCCEEECCCSSCEEEEEEC--
T ss_pred EEEECCCCCCEEEEEECCCCC----EEEEEECCCEEEE--EE-------------CCCCCEEEEEECCCCCEEEEEEC--
T ss_conf 076616677689999969999----8999938985999--98-------------99993778881667868789985--
Q ss_pred CCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCE
Q ss_conf 66887876685999995899399997999945999701687789999899999999998899994898099997899827
Q 000743 399 VGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRV 478 (1313)
Q Consensus 399 ~s~pDGr~~~~~LvSGS~DgtIrIWDl~tg~~l~tl~gH~~~V~sI~fsPd~~~~~~g~~IvSgS~DgtV~LWDL~t~~~ 478 (1313)
|+| .+|++|+.|++|++||+.+++++.++.+|...|.++.|+|+ ++.+++++.|++|++||++++.+
T Consensus 160 ---~~~----~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~------~~~l~s~s~D~~i~~wd~~~~~~ 226 (410)
T 1vyh_C 160 ---HSG----KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN------GDHIVSASRDKTIKMWEVQTGYC 226 (410)
T ss_dssp ---TTS----SEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSS------SSEEEEEETTSEEEEEETTTCCE
T ss_pred ---CCC----CEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECC------CCEEEEEECCCEEEEEECCCCCE
T ss_conf ---999----99999918981999958998266998289997789999679------99999996899699998999948
Q ss_pred EEEECCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEC
Q ss_conf 79942799993899994999999998527987779998799997999918999818898645776621
Q 000743 479 ERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCK 546 (1313)
Q Consensus 479 l~~l~gH~~~V~~IafsPdg~~Lisgs~DlsgssD~DgtIrIWDlrTg~lvr~L~GH~a~Vi~~~~c~ 546 (1313)
+..+.+|...+.++.|+|++.++++++.| ++|++||++++++...+.+|...+..+.|.+
T Consensus 227 ~~~~~~h~~~v~~~~~~~~g~~l~s~s~D--------~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~ 286 (410)
T 1vyh_C 227 VKTFTGHREWVRMVRPNQDGTLIASCSND--------QTVRVWVVATKECKAELREHRHVVECISWAP 286 (410)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETT--------SCEEEEETTTCCEEEEECCCSSCEEEEEECC
T ss_pred EEEEECCCCCEEEEEECCCCCEEEEECCC--------CEEEEEECCCCCEEEEECCCCCEEEEEEECC
T ss_conf 99992788628999998999999999189--------9099998989743667337874589999858
No 10
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=1.00 E-value=1 Score=213.82 Aligned_cols=210 Identities=20% Similarity=0.178 Sum_probs=167.1
Q ss_pred ECCCCCCEEEEEEEEECCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCC
Q ss_conf 01127940899754203543598899999699399999304655799998534587507899834786689999810466
Q 000743 321 DFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVG 400 (1313)
Q Consensus 321 ~l~gH~~~Vtss~~Is~~~fsP~~Lv~Gs~DGsI~I~~wdll~~~~~~~~~wdv~s~~~~~~L~GH~~~V~sLafsP~~s 400 (1313)
....+...|++..+.++. .+++|+.||.|++ |++... -........+.+|.+.|++++|+
T Consensus 77 ~~~~~~~~v~~~~~s~d~-----~l~~~s~dg~v~l--Wd~~~~---------~~~~~~~~~~~~H~~~V~~v~~s---- 136 (344)
T 4gqb_B 77 AGVQTEAGVADLTWVGER-----GILVASDSGAVEL--WELDEN---------ETLIVSKFCKYEHDDIVSTVSVL---- 136 (344)
T ss_dssp EEEEESSCEEEEEEETTT-----EEEEEETTSEEEE--EEECTT---------SSCEEEEEEEECCSSCEEEEEEC----
T ss_pred EEECCCCCEEEEEEECCC-----EEEEEECCCEEEE--EECCCC---------CCEEEEECCCCCCCCCEEEEEEC----
T ss_conf 660367987899992998-----2999989798999--965388---------74358601346789978999998----
Q ss_pred CCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCEEE
Q ss_conf 88787668599999589939999799994599970168778999989999999999889999489809999789982779
Q 000743 401 TAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVER 480 (1313)
Q Consensus 401 ~pDGr~~~~~LvSGS~DgtIrIWDl~tg~~l~tl~gH~~~V~sI~fsPd~~~~~~g~~IvSgS~DgtV~LWDL~t~~~l~ 480 (1313)
||| ++|++|+.|++|++||+.+++++.++.+|.+.|+++.|+|++ ..++++++.|++|++||++++++..
T Consensus 137 -pdg----~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~-----~~~l~s~s~D~~v~iwd~~~~~~~~ 206 (344)
T 4gqb_B 137 -SSG----TQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHK-----DSVFLSCSEDNRILLWDTRCPKPAS 206 (344)
T ss_dssp -TTS----SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSC-----TTEEEEEETTSCEEEEETTSSSCEE
T ss_pred -CCC----CEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCC-----CCCEEEECCCCCCCCCCCCCCCEEE
T ss_conf -998----999999498939999999996999975768855788865899-----9740110344355102344552001
Q ss_pred EEC--CCCCCCEEEEECCC-CCEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCEEECCC
Q ss_conf 942--79999389999499-999999852798777999879999799991899981889864577662166652011231
Q 000743 481 MFP--GHPNYPAKVVWDCP-RGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSV 557 (1313)
Q Consensus 481 ~l~--gH~~~V~~IafsPd-g~~Lisgs~DlsgssD~DgtIrIWDlrTg~lvr~L~GH~a~Vi~~~~c~~~s~~~vSGS~ 557 (1313)
.+. .|...+.+++|+|+ +.++++|+.| ++|++||++++++++.+.+|...+..+.|++.-...+++|+.
T Consensus 207 ~~~~~~~~~~~~~~~~~p~~~~~l~sg~~d--------g~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~ 278 (344)
T 4gqb_B 207 QIGCSAPGYLPTSLAWHPQQSEVFVFGDEN--------GTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSE 278 (344)
T ss_dssp ECC----CCCEEEEEECSSCTTEEEEEETT--------SEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEET
T ss_pred EEECCEEECCCEEEEECCCCCCCEEEECCC--------CCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEC
T ss_conf 110100001212356617999605886158--------718989899995989983788998899992699909999938
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 048821246864534898279883875
Q 000743 558 LNGNTSVSSLLLPIHEDGTFRQSQIQN 584 (1313)
Q Consensus 558 l~g~~~~S~~lvsvs~D~tir~Wdl~~ 584 (1313)
|+++|+||++.
T Consensus 279 ----------------D~~i~vwd~~~ 289 (344)
T 4gqb_B 279 ----------------DCSLAVLDSSL 289 (344)
T ss_dssp ----------------TSCEEEECTTC
T ss_pred ----------------CCEEEEEECCC
T ss_conf ----------------99499999999
Done!