BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000744
(1306 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14,
An Armadillo Repeat Containing Protein From Arabidopsis
Thaliana
Length = 78
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Query: 341 PKDFVCPITGQIFNDPVTLETGQTYERKAIQEWLKRGNTTCPITRQPLCSNSLPKTNYVL 400
P+ F CPI+ ++ DPV + TGQTYER +IQ+WL G+ TCP +++ L L NYVL
Sbjct: 6 PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGL-TPNYVL 64
Query: 401 KRLITSWKE 409
K LI W E
Sbjct: 65 KSLIALWCE 73
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 1050 LSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKP 1109
S SDG I +WD + L +++ + HT +C+ + + G KL++G LD T+R W ++
Sbjct: 157 FSCCSDGNIAVWDLHNQTL--VRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR- 213
Query: 1110 EEIHCLQVHNVKEAVHEL 1127
E LQ H+ + L
Sbjct: 214 -EGRQLQQHDFTSQIFSL 230
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 117/259 (45%), Gaps = 41/259 (15%)
Query: 1049 VLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIK 1108
++S +D T+K+W++ I + HT V C+++ ++ SGS D T+RVW I+
Sbjct: 172 IISGSTDRTLKVWNA--ETGECIHTLYGHTSTVRCMHLHEK--RVVSGSRDATLRVWDIE 227
Query: 1109 PEE-IHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIK--------HINFNK 1159
+ +H L H AV + + VS A V W + H N
Sbjct: 228 TGQCLHVLMGHVA--AVRCVQYDGRRV--VSGAYDFMVKVWDPETETCLHTLQGHTN--- 280
Query: 1160 HVKSLVMTGDKLYCGCSGYSIQ--EVDLGNLTSTTFYAGTKKLLGKQTIHS-LHMHNGLL 1216
V SL G + G SI+ +V+ GN T L G Q++ S + + + +L
Sbjct: 281 RVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHT--------LTGHQSLTSGMELKDNIL 332
Query: 1217 FAGGSSVDGTAGKVFSISS----KTAVGSFTTGIDIQHLAVNSDFIFTATKCGTIEVW-L 1271
+G + D T K++ I + +T G + L N +F+ T++ GT+++W L
Sbjct: 333 VSGNA--DSTV-KIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDL 389
Query: 1272 K--ERVTRVASVKANNSGG 1288
K E + + ++++ SGG
Sbjct: 390 KTGEFIRNLVTLESGGSGG 408
Score = 35.0 bits (79), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 1048 RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSI 1107
RV+S D +K+WD + ++ HT V L G + SGSLD +IRVW +
Sbjct: 251 RVVSGAYDFMVKVWDPETETC--LHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDV 306
Query: 1108 KPEE-IHCLQVHNVKEAVHELTAN 1130
+ IH L H + EL N
Sbjct: 307 ETGNCIHTLTGHQSLTSGMELKDN 330
>pdb|2OXQ|C Chain C, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|D Chain D, Structure Of The Ubch5 :chip U-Box Complex
Length = 80
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 334 MTSRSRPPKDFVC-PITGQIFNDPVTLETGQTYERKAIQEWLKRGNTTCPITRQPLCSNS 392
M S+ R D++C I+ ++ +P +G TY+RK I+E L+R P+TR PL +
Sbjct: 3 MGSKKREIPDYLCGKISFELMAEPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQ 62
Query: 393 LPKTNYVLKRLITSWKEQ 410
L N +K +I ++ ++
Sbjct: 63 L-IPNLAMKEVIDAFIQE 79
>pdb|2F42|A Chain A, Dimerization And U-Box Domains Of Zebrafish C-Terminal Of
Hsp70 Interacting Protein
Length = 179
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 10/89 (11%)
Query: 330 CSEKMTSRSRPPKDFVC-PITGQIFNDPVTLETGQTYERKAIQEWLKRGNTTCPITRQPL 388
EK R P D++C I+ ++ +P +G TY+RK I+E L+R P+TR PL
Sbjct: 94 VDEKRKKREIP--DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPL 151
Query: 389 CSNSLPKTNYVLKRLITS------WKEQY 411
+ L N +K +I + W E Y
Sbjct: 152 TQDQLI-PNLAMKEVIDAFIQENGWVEDY 179
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 18/152 (11%)
Query: 1000 YSAVVTDIQKALMNLSSVNATELWHCN----EVTELDSSTNGEVLSLIHLKGRVLSSHSD 1055
Y ++ DI+ N W C + S T+ V L + +++S D
Sbjct: 102 YPKIIQDIETIESN---------WRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRD 152
Query: 1056 GTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCL 1115
TIK+WD K L + + HT +V CL + +GS D T+RVW + E+
Sbjct: 153 NTIKIWD--KNTLECKRILTGHTGSVLCLQYDER--VIITGSSDSTVRVWDVNTGEMLNT 208
Query: 1116 QVHNVKEAVHELTANAEIACFVSPATGVKVYN 1147
+H+ EAV L N + S + V++
Sbjct: 209 LIHHC-EAVLHLRFNNGMMVTCSKDRSIAVWD 239
Score = 37.0 bits (84), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 8/70 (11%)
Query: 1049 VLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLY-SGSLDKTIRVWSI 1107
++S+ D TIK+W++ ++ + H R + CL D+L SGS D TIR+W I
Sbjct: 269 IVSASGDRTIKVWNTS--TCEFVRTLNGHKRGIACL---QYRDRLVVSGSSDNTIRLWDI 323
Query: 1108 KPEEIHCLQV 1117
E CL+V
Sbjct: 324 --ECGACLRV 331
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 10/87 (11%)
Query: 332 EKMTSRSRPPKDFVC-PITGQIFNDPVTLETGQTYERKAIQEWLKRGNTTCPITRQPLCS 390
EK R P D++C I+ ++ +P +G TY+RK I+E L+R P+TR PL
Sbjct: 198 EKRKKRDIP--DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255
Query: 391 NSLPKTNYVLKRLITS------WKEQY 411
L N +K +I + W E Y
Sbjct: 256 EQLI-PNLAMKEVIDAFISENGWVEDY 281
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 1047 GRVLSSHS-DGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVW 1105
G+ L++ + D I++WD R + +I ++ H + + L SGDKL SGS D+T+R+W
Sbjct: 135 GKFLATGAEDRLIRIWDIENRKIVMI--LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIW 192
Query: 1106 SIK 1108
++
Sbjct: 193 DLR 195
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 1048 RVLSSHSDGTIKMWD--SGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVW 1105
+++S D T+++WD +G+ L L E T AV+ P G + +GSLD+ +RVW
Sbjct: 179 KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVS----PGDGKYIAAGSLDRAVRVW 234
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 1047 GRVLSSHS-DGTIKMWDS--GKRVLRLIQEVRE---HTRAVTCLYVPSSGDKLYSGSLDK 1100
G+ +++ S D +++WDS G V RL E H +V + G + SGSLD+
Sbjct: 219 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR 278
Query: 1101 TIRVWSIK 1108
++++W+++
Sbjct: 279 SVKLWNLQ 286
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 40.8 bits (94), Expect = 0.005, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 1050 LSSHSDGTIKMWD--SGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSI 1107
LS+ D T+++WD +G+ R + H V + + + SGS DKTI+VW+I
Sbjct: 81 LSASWDKTLRLWDVATGETYQRFVG----HKSDVXSVDIDKKASXIISGSRDKTIKVWTI 136
Query: 1108 KPEEIHCLQVHN 1119
K + + L HN
Sbjct: 137 KGQCLATLLGHN 148
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A
6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating
80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 1050 LSSHSDGTIKMWD--SGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSI 1107
LS+ D T+++WD +G+ R + H V + + + SGS DKTI+VW+I
Sbjct: 81 LSASWDKTLRLWDVATGETYQRFVG----HKSDVMSVDIDKKASMIISGSRDKTIKVWTI 136
Query: 1108 KPEEIHCLQVHN 1119
K + + L HN
Sbjct: 137 KGQCLATLLGHN 148
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 1050 LSSHSDGTIKMWD--SGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSI 1107
LS+ D T+++WD +G+ R + H V + + + SGS DKTI+VW+I
Sbjct: 81 LSASWDKTLRLWDVATGETYQRFVG----HKSDVMSVDIDKKASMIISGSRDKTIKVWTI 136
Query: 1108 KPEEIHCLQVHN 1119
K + + L HN
Sbjct: 137 KGQCLATLLGHN 148
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 1050 LSSHSDGTIKMWD--SGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSI 1107
LS+ D T+++WD +G+ R + H V + + + SGS DKTI+VW+I
Sbjct: 81 LSASWDKTLRLWDVATGETYQRFVG----HKSDVMSVDIDKKASMIISGSRDKTIKVWTI 136
Query: 1108 KPEEIHCLQVHN 1119
K + + L HN
Sbjct: 137 KGQCLATLLGHN 148
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 1050 LSSHSDGTIKMWD--SGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSI 1107
LS+ D T+++WD +G+ R + H V + + + SGS DKTI+VW+I
Sbjct: 75 LSASWDKTLRLWDVATGETYQRFVG----HKSDVMSVDIDKKASMIISGSRDKTIKVWTI 130
Query: 1108 KPEEIHCLQVHN 1119
K + + L HN
Sbjct: 131 KGQCLATLLGHN 142
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 1050 LSSHSDGTIKMWD--SGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSI 1107
LS+ D T+++WD +G+ R + H V + + + SGS DKTI+VW+I
Sbjct: 81 LSASWDKTLRLWDVATGETYQRFVG----HKSDVMSVDIDKKASMIISGSRDKTIKVWTI 136
Query: 1108 KPEEIHCLQVHN 1119
K + + L HN
Sbjct: 137 KGQCLATLLGHN 148
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 64/138 (46%), Gaps = 12/138 (8%)
Query: 1021 ELWHCN-----EVTELDSSTNGEVLSLIHLKGRVLSSHSDG-TIKMWDSGKRVLRLIQEV 1074
+LW+ N +T SS NG G+ ++S SD T+K+W+ R +L+Q +
Sbjct: 246 KLWNRNGQLLQTLTGHSSSVNGVAF---RPDGQTIASASDDKTVKLWN---RNGQLLQTL 299
Query: 1075 REHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIA 1134
H+ +V + G + S S DKT+++W+ + + L H+ + + +
Sbjct: 300 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTI 359
Query: 1135 CFVSPATGVKVYNWSGAI 1152
S VK++N +G +
Sbjct: 360 ASASDDKTVKLWNRNGQL 377
Score = 38.9 bits (89), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Query: 1049 VLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIK 1108
+ S+ D T+K+W+ R +L+Q + H+ +V + G + S S DKT+++W+
Sbjct: 441 IASASDDKTVKLWN---RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 497
Query: 1109 PEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAI 1152
+ + L H+ + + + S VK++N +G +
Sbjct: 498 GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL 541
Score = 38.9 bits (89), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Query: 1049 VLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIK 1108
+ S+ D T+K+W+ R +L+Q + H+ +V + G + S S DKT+++W+
Sbjct: 72 IASASDDKTVKLWN---RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 128
Query: 1109 PEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAI 1152
+ + L H+ + + + S VK++N +G +
Sbjct: 129 GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL 172
Score = 38.9 bits (89), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 1049 VLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIK 1108
+ S+ D T+K+W+ R +L+Q + H+ +V + G + S S DKT+++W+
Sbjct: 482 IASASDDKTVKLWN---RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 538
Query: 1109 PEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYN 1147
+ + L H+ + + + S VK++N
Sbjct: 539 GQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Query: 1049 VLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIK 1108
+ S+ D T+K+W+ R +L+Q + H+ +V + G + S S DKT+++W+
Sbjct: 31 IASASDDKTVKLWN---RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 87
Query: 1109 PEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAI 1152
+ + L H+ + + + S VK++N +G +
Sbjct: 88 GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL 131
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Query: 1049 VLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIK 1108
+ S+ D T+K+W+ R +L+Q + H+ +V + G + S S DKT+++W+
Sbjct: 154 IASASDDKTVKLWN---RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 210
Query: 1109 PEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAI 1152
+ + L H+ + + + S VK++N +G +
Sbjct: 211 GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL 254
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Query: 1049 VLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIK 1108
+ S+ D T+K+W+ R +L+Q + H+ +V + G + S S DKT+++W+
Sbjct: 113 IASASDDKTVKLWN---RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 169
Query: 1109 PEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAI 1152
+ + L H+ + + + S VK++N +G +
Sbjct: 170 GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL 213
Score = 37.7 bits (86), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Query: 1049 VLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIK 1108
+ S+ D T+K+W+ R +L+Q + H+ +V + G + S S DKT+++W+
Sbjct: 195 IASASDDKTVKLWN---RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 251
Query: 1109 PEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAI 1152
+ + L H+ + + S VK++N +G +
Sbjct: 252 GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQL 295
Score = 37.7 bits (86), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Query: 1049 VLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIK 1108
+ S+ D T+K+W+ R +L+Q + H+ +V + G + S S DKT+++W+
Sbjct: 359 IASASDDKTVKLWN---RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 415
Query: 1109 PEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAI 1152
+ + L H+ + + + S VK++N +G +
Sbjct: 416 GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQL 459
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Query: 1049 VLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIK 1108
+ S+ D T+K+W+ R + +Q + H+ +V + G + S S DKT+++W+
Sbjct: 318 IASASDDKTVKLWN---RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 374
Query: 1109 PEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAI 1152
+ + L H+ + + + S VK++N +G +
Sbjct: 375 GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL 418
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Query: 1049 VLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIK 1108
+ S+ D T+K+W+ R +L+Q + H+ +V + + S S DKT+++W+
Sbjct: 400 IASASDDKTVKLWN---RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN 456
Query: 1109 PEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAI 1152
+ + L H+ + + + S VK++N +G +
Sbjct: 457 GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL 500
>pdb|2C2V|S Chain S, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|T Chain T, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|U Chain U, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|V Chain V, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 78
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 343 DFVC-PITGQIFNDPVTLETGQTYERKAIQEWLKRGNTTCPITRQPLCSNSLPKTNYVLK 401
D++C I+ ++ +P +G TY+RK I+E L+R P+TR PL L N +K
Sbjct: 4 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQL-IPNLAMK 62
Query: 402 RLITS------WKEQY 411
+I + W E Y
Sbjct: 63 EVIDAFISENGWVEDY 78
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A
5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 1045 LKGRVL-SSHSDGTIKMWDS--GKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKT 1101
+ GR+L + +S+G +WD+ + VL L H ++CL + S G L +GS DK
Sbjct: 308 ISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKN 367
Query: 1102 IRVWSI 1107
+++W+
Sbjct: 368 LKIWAF 373
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 1048 RVLSSHSDGTIKMWD--SGKRVLRLIQEV-REHTRAVTCLYVPSSGDKLY-SGSLDKTIR 1103
R+++ D T +WD +G+R+ E HT V L + S ++ SGS D T+R
Sbjct: 172 RLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVR 231
Query: 1104 VWSIK 1108
+W ++
Sbjct: 232 LWDLR 236
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution
Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A Resolution
Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A Resolution
Of 2.45 Angstrom
Length = 340
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 13/143 (9%)
Query: 1050 LSSHSDGTIKMWD--SGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSI 1107
LS DGT+++WD +G R + HT+ V + S ++ SGS DKTI++W+
Sbjct: 102 LSGSWDGTLRLWDLTTGTTTRRFVG----HTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT 157
Query: 1108 KPEEIHCLQVHNVKEAVH--ELTANAEIACFVSPATG--VKVYNWSGA---IKHINFNKH 1160
+ +Q + E V + N+ VS VKV+N + HI +
Sbjct: 158 LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGY 217
Query: 1161 VKSLVMTGDKLYCGCSGYSIQEV 1183
+ ++ ++ D C G Q +
Sbjct: 218 LNTVTVSPDGSLCASGGKDGQAM 240
Score = 30.8 bits (68), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 1049 VLSSHSDGTIKMWDSGKRVLRL---IQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVW 1105
+LS+ D TI MW + + +R H+ V+ + + S G SGS D T+R+W
Sbjct: 54 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 113
Query: 1106 SI 1107
+
Sbjct: 114 DL 115
Score = 30.8 bits (68), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Query: 1022 LWHCNEVTELDSSTNGEVLSLIHLKGR--VLSSHSDGTIKMWD-SGKRVL-RLIQEV--- 1074
LW NE L + G++++ + L + + +IK+WD GK ++ L QEV
Sbjct: 241 LWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVIST 300
Query: 1075 --REHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSI 1107
+ T L + G L++G D +RVW +
Sbjct: 301 SSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 335
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s
Complex Obtained By Docking Homology Models Of The Rna
And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 13/143 (9%)
Query: 1050 LSSHSDGTIKMWD--SGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSI 1107
LS DGT+++WD +G R + HT+ V + S ++ SGS DKTI++W+
Sbjct: 79 LSGSWDGTLRLWDLTTGTTTRRFVG----HTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT 134
Query: 1108 KPEEIHCLQVHNVKEAVH--ELTANAEIACFVSPATG--VKVYNWSGA---IKHINFNKH 1160
+ +Q + E V + N+ VS VKV+N + HI +
Sbjct: 135 LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGY 194
Query: 1161 VKSLVMTGDKLYCGCSGYSIQEV 1183
+ ++ ++ D C G Q +
Sbjct: 195 LNTVTVSPDGSLCASGGKDGQAM 217
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 1049 VLSSHSDGTIKMWDSGKRVLRL---IQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVW 1105
+LS+ D TI MW + + +R H+ V+ + + S G SGS D T+R+W
Sbjct: 31 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 90
Query: 1106 SI 1107
+
Sbjct: 91 DL 92
Score = 30.4 bits (67), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Query: 1022 LWHCNEVTELDSSTNGEVLSLIHLKGR--VLSSHSDGTIKMWD-SGKRVL-RLIQEV--- 1074
LW NE L + G++++ + L + + +IK+WD GK ++ L QEV
Sbjct: 218 LWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVIST 277
Query: 1075 --REHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSI 1107
+ T L + G L++G D +RVW +
Sbjct: 278 SSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 312
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated
Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 39.7 bits (91), Expect = 0.011, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 1049 VLSSHSDGTIKMWD--SGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWS 1106
++S+ D T+K+WD SGK ++ ++ H+ V C + + SGS D+++R+W
Sbjct: 79 LVSASDDKTLKIWDVSSGK----CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 134
Query: 1107 IK 1108
+K
Sbjct: 135 VK 136
Score = 33.1 bits (74), Expect = 1.1, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 1049 VLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSS---GDKLYSGSLDKTIRVW 1105
+L++ D T+K+WD K + ++ H C++ S G + SGS D + +W
Sbjct: 206 ILAATLDNTLKLWDYSKG--KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 263
Query: 1106 SIKPEEI 1112
+++ +EI
Sbjct: 264 NLQTKEI 270
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 39.7 bits (91), Expect = 0.012, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 1049 VLSSHSDGTIKMWD--SGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWS 1106
++S+ D T+K+WD SGK ++ ++ H+ V C + + SGS D+++R+W
Sbjct: 86 LVSASDDKTLKIWDVSSGK----CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 1107 IK 1108
+K
Sbjct: 142 VK 143
Score = 33.1 bits (74), Expect = 1.1, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 1049 VLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSS---GDKLYSGSLDKTIRVW 1105
+L++ D T+K+WD K + ++ H C++ S G + SGS D + +W
Sbjct: 213 ILAATLDNTLKLWDYSKG--KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 270
Query: 1106 SIKPEEI 1112
+++ +EI
Sbjct: 271 NLQTKEI 277
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-5-
Nitrophenyl]benzamide
Length = 312
Score = 39.7 bits (91), Expect = 0.012, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 1049 VLSSHSDGTIKMWD--SGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWS 1106
++S+ D T+K+WD SGK ++ ++ H+ V C + + SGS D+++R+W
Sbjct: 80 LVSASDDKTLKIWDVSSGK----CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 135
Query: 1107 IK 1108
+K
Sbjct: 136 VK 137
Score = 33.1 bits (74), Expect = 1.2, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 1049 VLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSS---GDKLYSGSLDKTIRVW 1105
+L++ D T+K+WD K + ++ H C++ S G + SGS D + +W
Sbjct: 207 ILAATLDNTLKLWDYSKG--KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 264
Query: 1106 SIKPEEI 1112
+++ +EI
Sbjct: 265 NLQTKEI 271
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated
Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of Methylated
Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 39.7 bits (91), Expect = 0.012, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 1049 VLSSHSDGTIKMWD--SGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWS 1106
++S+ D T+K+WD SGK ++ ++ H+ V C + + SGS D+++R+W
Sbjct: 76 LVSASDDKTLKIWDVSSGK----CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 131
Query: 1107 IK 1108
+K
Sbjct: 132 VK 133
Score = 33.1 bits (74), Expect = 1.1, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 1049 VLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSS---GDKLYSGSLDKTIRVW 1105
+L++ D T+K+WD K + ++ H C++ S G + SGS D + +W
Sbjct: 203 ILAATLDNTLKLWDYSKG--KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 260
Query: 1106 SIKPEEI 1112
+++ +EI
Sbjct: 261 NLQTKEI 267
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone
Mark That Supports Euchromatin Maintenance
Length = 318
Score = 39.7 bits (91), Expect = 0.012, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 1049 VLSSHSDGTIKMWD--SGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWS 1106
++S+ D T+K+WD SGK ++ ++ H+ V C + + SGS D+++R+W
Sbjct: 86 LVSASDDKTLKIWDVSSGK----CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 1107 IK 1108
+K
Sbjct: 142 VK 143
Score = 33.1 bits (74), Expect = 1.2, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 1049 VLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSS---GDKLYSGSLDKTIRVW 1105
+L++ D T+K+WD K + ++ H C++ S G + SGS D + +W
Sbjct: 213 ILAATLDNTLKLWDYSKG--KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 270
Query: 1106 SIKPEEI 1112
+++ +EI
Sbjct: 271 NLQTKEI 277
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 39.7 bits (91), Expect = 0.012, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 1049 VLSSHSDGTIKMWD--SGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWS 1106
++S+ D T+K+WD SGK ++ ++ H+ V C + + SGS D+++R+W
Sbjct: 81 LVSASDDKTLKIWDVSSGK----CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 136
Query: 1107 IK 1108
+K
Sbjct: 137 VK 138
Score = 33.1 bits (74), Expect = 1.2, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 1049 VLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSS---GDKLYSGSLDKTIRVW 1105
+L++ D T+K+WD K + ++ H C++ S G + SGS D + +W
Sbjct: 208 ILAATLDNTLKLWDYSKG--KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 265
Query: 1106 SIKPEEI 1112
+++ +EI
Sbjct: 266 NLQTKEI 272
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 39.7 bits (91), Expect = 0.012, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 1049 VLSSHSDGTIKMWD--SGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWS 1106
++S+ D T+K+WD SGK ++ ++ H+ V C + + SGS D+++R+W
Sbjct: 80 LVSASDDKTLKIWDVSSGK----CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 135
Query: 1107 IK 1108
+K
Sbjct: 136 VK 137
Score = 33.1 bits (74), Expect = 1.2, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 1049 VLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSS---GDKLYSGSLDKTIRVW 1105
+L++ D T+K+WD K + ++ H C++ S G + SGS D + +W
Sbjct: 207 ILAATLDNTLKLWDYSKG--KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 264
Query: 1106 SIKPEEI 1112
+++ +EI
Sbjct: 265 NLQTKEI 271
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Query: 1048 RVLSSHSDGTIKMWD--SGKRVLRLIQEVREHTRAVTCL-YVPS-SGDKLYSGSLDKTIR 1103
++L++ DGT +WD SG+ L+Q H V CL PS +G+ SG DK
Sbjct: 168 QILTASGDGTCALWDVESGQ----LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAM 223
Query: 1104 VWSIKPEEIHCLQVHNVKEA 1123
VW ++ + C+Q E+
Sbjct: 224 VWDMRSGQ--CVQAFETHES 241
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 1045 LKGRVL-SSHSDGTIKMWD--SGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKT 1101
L GR+L + ++D TI +WD G RV L H V+ L V G SGS D T
Sbjct: 294 LSGRLLFAGYNDYTINVWDVLKGSRVSILFG----HENRVSTLRVSPDGTAFCSGSWDHT 349
Query: 1102 IRVWS 1106
+RVW+
Sbjct: 350 LRVWA 354
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 38.9 bits (89), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 1047 GRVLSSHS-DGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVW 1105
G++L+S S D TIK+WD + I+ + H V+ + + +GD + S S DKTI++W
Sbjct: 162 GKLLASCSADMTIKLWDF--QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 219
Query: 1106 SIK 1108
++
Sbjct: 220 EVQ 222
Score = 37.0 bits (84), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 1042 LIHLKGR-VLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDK 1100
L H G+ +LS D T+++WD + R ++ + H VT L + + +GS+D+
Sbjct: 345 LFHSGGKFILSCADDKTLRVWDYKNK--RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQ 402
Query: 1101 TIRVWSIK 1108
T++VW +
Sbjct: 403 TVKVWECR 410
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 1049 VLSSHSDGTIKMWD--SGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWS 1106
+LS D TIKMWD +G ++ L+ H V + S G + S + DKT+RVW
Sbjct: 311 LLSGSRDKTIKMWDVSTGMCLMTLVG----HDNWVRGVLFHSGGKFILSCADDKTLRVWD 366
Query: 1107 IKPEEIHCLQVHNVKE 1122
K + C++ N E
Sbjct: 367 YKNKR--CMKTLNAHE 380
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 22/79 (27%)
Query: 1049 VLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCL-YVPSS------------------ 1089
+ S +D T+++W + + E+REH V C+ + P S
Sbjct: 249 IASCSNDQTVRVWVVATKECK--AELREHRHVVECISWAPESSYSSISEATGSETKKSGK 306
Query: 1090 -GDKLYSGSLDKTIRVWSI 1107
G L SGS DKTI++W +
Sbjct: 307 PGPFLLSGSRDKTIKMWDV 325
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Query: 1049 VLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIK 1108
++S+ D TIK+WD + ++ HT +V + SG L S S D TI++W +
Sbjct: 123 MVSASEDATIKVWDY--ETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180
Query: 1109 PEEIHCLQV-----HNV 1120
E C++ HNV
Sbjct: 181 GFE--CIRTMHGHDHNV 195
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 8/70 (11%)
Query: 1049 VLSSHSDGTIKMWD--SGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWS 1106
++S+ D T+K+WD SGK ++ ++ H+ V C + + SGS D+++R+W
Sbjct: 83 LVSASDDKTLKIWDVSSGK----CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 1107 IKPEEIHCLQ 1116
+K + CL+
Sbjct: 139 VKTGK--CLK 146
Score = 33.5 bits (75), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 1049 VLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVP---SSGDKLYSGSLDKTIRVW 1105
+L++ D T+K+WD K + ++ H C++ + G + SGS D + +W
Sbjct: 210 ILAATLDNTLKLWDYSKG--KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 267
Query: 1106 SIKPEEI-HCLQVH 1118
+++ +EI LQ H
Sbjct: 268 NLQTKEIVQKLQGH 281
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 8/70 (11%)
Query: 1049 VLSSHSDGTIKMWD--SGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWS 1106
++S+ D T+K+WD SGK ++ ++ H+ V C + + SGS D+++R+W
Sbjct: 83 LVSASDDKTLKIWDVSSGK----CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 1107 IKPEEIHCLQ 1116
+K + CL+
Sbjct: 139 VKTGK--CLK 146
Score = 33.5 bits (75), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 1049 VLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVP---SSGDKLYSGSLDKTIRVW 1105
+L++ D T+K+WD K + ++ H C++ + G + SGS D + +W
Sbjct: 210 ILAATLDNTLKLWDYSKG--KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 267
Query: 1106 SIKPEEI-HCLQVH 1118
+++ +EI LQ H
Sbjct: 268 NLQTKEIVQKLQGH 281
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 8/70 (11%)
Query: 1049 VLSSHSDGTIKMWD--SGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWS 1106
++S+ D T+K+WD SGK ++ ++ H+ V C + + SGS D+++R+W
Sbjct: 83 LVSASDDKTLKIWDVSSGK----CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 1107 IKPEEIHCLQ 1116
+K + CL+
Sbjct: 139 VKTGK--CLK 146
Score = 33.1 bits (74), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 1049 VLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVP---SSGDKLYSGSLDKTIRVW 1105
+L++ D T+K+WD K + ++ H C++ + G + SGS D + +W
Sbjct: 210 ILAATLDNTLKLWDYSKG--KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 267
Query: 1106 SIKPEEI-HCLQVH 1118
+++ +EI LQ H
Sbjct: 268 NLQTKEIVQKLQGH 281
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 1049 VLSSHSDGTIKMWD--SGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWS 1106
++S+ D T+K+WD SGK ++ ++ H+ V C + + SGS D+++R+W
Sbjct: 97 LVSASDDKTLKIWDVSSGK----CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 152
Query: 1107 IKPEEIHCLQV 1117
+K + CL+
Sbjct: 153 VKTGK--CLKT 161
Score = 33.1 bits (74), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 1049 VLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVP---SSGDKLYSGSLDKTIRVW 1105
+L++ D T+K+WD K + ++ H C++ + G + SGS D + +W
Sbjct: 224 ILAATLDNTLKLWDYSKG--KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 281
Query: 1106 SIKPEEI-HCLQVH 1118
+++ +EI LQ H
Sbjct: 282 NLQTKEIVQKLQGH 295
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3 Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3 Peptide
Length = 334
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 1049 VLSSHSDGTIKMWD--SGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWS 1106
++S+ D T+K+WD SGK ++ ++ H+ V C + + SGS D+++R+W
Sbjct: 102 LVSASDDKTLKIWDVSSGK----CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 157
Query: 1107 IK 1108
+K
Sbjct: 158 VK 159
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 1049 VLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVP---SSGDKLYSGSLDKTIRVW 1105
+L++ D T+K+WD K + ++ H C++ + G + SGS D + +W
Sbjct: 229 ILAATLDNTLKLWDYSKG--KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 286
Query: 1106 SIKPEEI-HCLQVH 1118
+++ +EI LQ H
Sbjct: 287 NLQTKEIVQKLQGH 300
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 38.5 bits (88), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 8/70 (11%)
Query: 1049 VLSSHSDGTIKMWD--SGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWS 1106
++S+ D T+K+WD SGK ++ ++ H+ V C + + SGS D+++R+W
Sbjct: 85 LVSASDDKTLKIWDVSSGK----CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 140
Query: 1107 IKPEEIHCLQ 1116
+K + CL+
Sbjct: 141 VKTGK--CLK 148
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 1049 VLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVP---SSGDKLYSGSLDKTIRVW 1105
+L++ D T+K+WD K + ++ H C++ + G + SGS D + +W
Sbjct: 212 ILAATLDNTLKLWDYSKG--KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 269
Query: 1106 SIKPEEI-HCLQVH 1118
+++ +EI LQ H
Sbjct: 270 NLQTKEIVQKLQGH 283
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 38.5 bits (88), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 1049 VLSSHSDGTIKMWD--SGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWS 1106
++S+ D T+K+WD SGK ++ ++ H+ V C + + SGS D+++R+W
Sbjct: 104 LVSASDDKTLKIWDVSSGK----CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 159
Query: 1107 IK 1108
+K
Sbjct: 160 VK 161
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 1049 VLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVP---SSGDKLYSGSLDKTIRVW 1105
+L++ D T+K+WD K + ++ H C++ + G + SGS D + +W
Sbjct: 231 ILAATLDNTLKLWDYSKG--KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 288
Query: 1106 SIKPEEI-HCLQVH 1118
+++ +EI LQ H
Sbjct: 289 NLQTKEIVQKLQGH 302
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 38.5 bits (88), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 8/70 (11%)
Query: 1049 VLSSHSDGTIKMWD--SGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWS 1106
++S+ D T+K+WD SGK ++ ++ H+ V C + + SGS D+++R+W
Sbjct: 86 LVSASDDKTLKIWDVSSGK----CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 1107 IKPEEIHCLQ 1116
+K + CL+
Sbjct: 142 VKTGK--CLK 149
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 1049 VLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVP---SSGDKLYSGSLDKTIRVW 1105
+L++ D T+K+WD K + ++ H C++ + G + SGS D + +W
Sbjct: 213 ILAATLDNTLKLWDYSKG--KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 270
Query: 1106 SIKPEEI-HCLQVH 1118
+++ +EI LQ H
Sbjct: 271 NLQTKEIVQKLQGH 284
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 38.5 bits (88), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 1049 VLSSHSDGTIKMWD--SGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWS 1106
++S+ D T+K+WD SGK ++ ++ H+ V C + + SGS D+++R+W
Sbjct: 83 LVSASDDKTLKIWDVSSGK----CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 1107 IK 1108
+K
Sbjct: 139 VK 140
Score = 33.5 bits (75), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 1049 VLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVP---SSGDKLYSGSLDKTIRVW 1105
+L++ D T+K+WD K + ++ H C++ + G + SGS D + +W
Sbjct: 210 ILAATLDNTLKLWDYSKG--KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIW 267
Query: 1106 SIKPEEI-HCLQVH 1118
+++ +EI LQ H
Sbjct: 268 NLQTKEIVQKLQGH 281
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 38.1 bits (87), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 1049 VLSSHSDGTIKMWD--SGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWS 1106
++S+ D T+K+WD SGK ++ ++ H+ V C + + SGS D+++R+W
Sbjct: 83 LVSASDDKTLKIWDVSSGK----CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 1107 IK 1108
+K
Sbjct: 139 VK 140
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 1049 VLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVP---SSGDKLYSGSLDKTIRVW 1105
+L++ D +K+WD K + ++ H C++ + G + SGS D + +W
Sbjct: 210 ILAATLDNDLKLWDYSKG--KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIW 267
Query: 1106 SIKPEEI-HCLQVH 1118
+++ +EI LQ H
Sbjct: 268 NLQTKEIVQKLQGH 281
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 37.7 bits (86), Expect = 0.045, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 342 KDFVCPITGQIFNDPVTLETGQTYERKAIQEWLKRGNTTCPITRQPLCSNSLPK 395
++ +CPI I PVT++ G + K I + G T+C + PLC S+ K
Sbjct: 19 EEVICPICLDILQKPVTIDCGHNFCLKCITQI---GETSCGFFKCPLCKTSVRK 69
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of
The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of
The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of
The Copi Vesicular Coat
Length = 814
Score = 37.0 bits (84), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 1046 KGRVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCL-YVPSSGDKLYSGSLDKTIRV 1104
K VLS D T+K+W+ + L Q H V C+ + P SG LD+T++V
Sbjct: 109 KPYVLSGSDDLTVKLWN-WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKV 167
Query: 1105 WSI 1107
WS+
Sbjct: 168 WSL 170
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 37.0 bits (84), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 1046 KGRVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCL-YVPSSGDKLYSGSLDKTIRV 1104
K VLS D T+K+W+ + L Q H V C+ + P SG LD+T++V
Sbjct: 109 KPYVLSGSDDLTVKLWN-WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKV 167
Query: 1105 WSI 1107
WS+
Sbjct: 168 WSL 170
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 37.0 bits (84), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 1046 KGRVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCL-YVPSSGDKLYSGSLDKTIRV 1104
K VLS D T+K+W+ + L Q H V C+ + P SG LD+T++V
Sbjct: 109 KPYVLSGSDDLTVKLWN-WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKV 167
Query: 1105 WSI 1107
WS+
Sbjct: 168 WSL 170
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 37.0 bits (84), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 1046 KGRVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCL-YVPSSGDKLYSGSLDKTIRV 1104
K VLS D T+K+W+ + L Q H V C+ + P SG LD+T++V
Sbjct: 109 KPYVLSGSDDLTVKLWN-WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKV 167
Query: 1105 WSI 1107
WS+
Sbjct: 168 WSL 170
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 36.6 bits (83), Expect = 0.11, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 1037 GEVLSLIHLKGRVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPS-SGDKLYS 1095
G V SL G V+S D T K+W G L+ ++ H +V V S S +K +
Sbjct: 105 GNVCSLSFQDGVVISGSWDKTAKVWKEGS----LVYNLQAHNASVWDAKVVSFSENKFLT 160
Query: 1096 GSLDKTIRVW 1105
S DKTI++W
Sbjct: 161 ASADKTIKLW 170
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 1048 RVLSSHSDGTIKMWD--SGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVW 1105
R+LS DGT+K+W+ +G R+ ++ H V + S K S S DKT ++W
Sbjct: 1064 RLLSWSFDGTVKVWNVITG----RIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1119
Query: 1106 SIK-PEEIHCLQVHN 1119
S +H L+ HN
Sbjct: 1120 SFDLLSPLHELKGHN 1134
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 70/176 (39%), Gaps = 23/176 (13%)
Query: 1055 DGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHC 1114
DG IK+ + R+ H +AV + + G L S S D I+VW+ + +
Sbjct: 989 DGAIKIIELPNN--RVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF 1046
Query: 1115 LQVHNVKEAVHELTANAEIACFVSPATGVKVYN-WSGAIKHINFNKHVKSLVMTGDKLYC 1173
LQ H L ++ + + T VKV+N +G I+ +F H G L C
Sbjct: 1047 LQAHQETVKDFRLLQDSRLLSWSFDGT-VKVWNVITGRIER-DFTCH------QGTVLSC 1098
Query: 1174 GCSGYSIQEVDLGNLTSTTFYAGTK----KLLGKQTIHSLHMHNGLLFAGGSSVDG 1225
S D +ST+ K LL +H L HNG + S+DG
Sbjct: 1099 AISS------DATKFSSTSADKTAKIWSFDLLS--PLHELKGHNGCVRCSAFSLDG 1146
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 1048 RVLSSHSDGTIKMWD--SGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVW 1105
R+LS DGT+K+W+ +G R+ ++ H V + S K S S DKT ++W
Sbjct: 1057 RLLSWSFDGTVKVWNVITG----RIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1112
Query: 1106 SIK-PEEIHCLQVHN 1119
S +H L+ HN
Sbjct: 1113 SFDLLSPLHELKGHN 1127
Score = 31.2 bits (69), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 70/176 (39%), Gaps = 23/176 (13%)
Query: 1055 DGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHC 1114
DG IK+ + R+ H +AV + + G L S S D I+VW+ + +
Sbjct: 982 DGAIKIIELPNN--RVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF 1039
Query: 1115 LQVHNVKEAVHELTANAEIACFVSPATGVKVYN-WSGAIKHINFNKHVKSLVMTGDKLYC 1173
LQ H L ++ + + T VKV+N +G I+ +F H G L C
Sbjct: 1040 LQAHQETVKDFRLLQDSRLLSWSFDGT-VKVWNVITGRIER-DFTCH------QGTVLSC 1091
Query: 1174 GCSGYSIQEVDLGNLTSTTFYAGTK----KLLGKQTIHSLHMHNGLLFAGGSSVDG 1225
S D +ST+ K LL +H L HNG + S+DG
Sbjct: 1092 AISS------DATKFSSTSADKTAKIWSFDLLS--PLHELKGHNGCVRCSAFSLDG 1139
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg
Particle Of The Proteasome
Length = 417
Score = 35.0 bits (79), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 1048 RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSI 1107
R + ++G IK+ DS + R I + H +T L SG+ L S S D +++WS+
Sbjct: 108 RFILGTTEGDIKVLDSNFNLQREIDQA--HVSEITKLKFFPSGEALISSSQDMQLKIWSV 165
Query: 1108 K 1108
K
Sbjct: 166 K 166
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 48/117 (41%), Gaps = 19/117 (16%)
Query: 1024 HCNEVTELDSSTNGEVLSLIHLKGRVLSSHSDGTIKMWD--SGKRVLRLIQEVREHTRAV 1081
H +E+T+L +GE L +SS D +K+W G LI H V
Sbjct: 135 HVSEITKLKFFPSGEAL---------ISSSQDMQLKIWSVKDGSNPRTLIG----HRATV 181
Query: 1082 TCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVS 1138
T + + G + S SLD TIR+W + N KE H+ IA FV
Sbjct: 182 TDIAIIDRGRNVLSASLDGTIRLWECGTGT--TIHTFNRKENPHD--GVNSIALFVG 234
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 35.0 bits (79), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 1048 RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSI 1107
R + ++G IK+ DS + R I + H +T L SG+ L S S D +++WS+
Sbjct: 111 RFILGTTEGDIKVLDSNFNLQREIDQA--HVSEITKLKFFPSGEALISSSQDMQLKIWSV 168
Query: 1108 K 1108
K
Sbjct: 169 K 169
Score = 34.7 bits (78), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 48/117 (41%), Gaps = 19/117 (16%)
Query: 1024 HCNEVTELDSSTNGEVLSLIHLKGRVLSSHSDGTIKMWD--SGKRVLRLIQEVREHTRAV 1081
H +E+T+L +GE L +SS D +K+W G LI H V
Sbjct: 138 HVSEITKLKFFPSGEAL---------ISSSQDMQLKIWSVKDGSNPRTLIG----HRATV 184
Query: 1082 TCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVS 1138
T + + G + S SLD TIR+W + N KE H+ IA FV
Sbjct: 185 TDIAIIDRGRNVLSASLDGTIRLWECGTGT--TIHTFNRKENPHD--GVNSIALFVG 237
>pdb|2YSJ|A Chain A, Solution Structure Of The Ring Domain (1-56) From
Tripartite Motif-containing Protein 31
Length = 63
Score = 35.0 bits (79), Expect = 0.30, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 342 KDFVCPITGQIFNDPVTLETGQTYERKAIQEWLKRGNTTCPITRQPLC 389
++ +CPI I PVT++ G + K I + G T+C + PLC
Sbjct: 19 EEVICPICLDILQKPVTIDCGHNFCLKCITQI---GETSCGFFKCPLC 63
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 34.3 bits (77), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 343 DFVCPITGQIFNDPVTLETGQTYERKAIQEWLKRGNTTCPITRQPL 388
+ C I + F + VTL ++ I EW+KR CPI R+ +
Sbjct: 53 ELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRK-IECPICRKDI 97
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 34.3 bits (77), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 343 DFVCPITGQIFNDPVTLETGQTYERKAIQEWLKRGNTTCPITRQPL 388
+ C I + F + VTL ++ I EW+KR CPI R+ +
Sbjct: 53 ELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRK-IECPICRKDI 97
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 33.9 bits (76), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 1049 VLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIK 1108
V++ D I+++DS + + + ++ H V L G L SGS D+T+RVW IK
Sbjct: 135 VITGADDKMIRVYDSINK--KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIK 191
Query: 1109 PE-EIHCLQVHN 1119
H + HN
Sbjct: 192 KGCCTHVFEGHN 203
Score = 33.5 bits (75), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 1033 SSTNGEVLSLIHLKGRVLSSHS-DGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGD 1091
S +G V +L + G +L S S D T+++WD K + E H V CL + +
Sbjct: 159 SGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFE--GHNSTVRCLDIVEYKN 216
Query: 1092 KLY--SGSLDKTIRVWSIKPE 1110
Y +GS D T+ VW + E
Sbjct: 217 IKYIVTGSRDNTLHVWKLPKE 237
Score = 31.6 bits (70), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 1049 VLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIK 1108
V+S D T+ +WD + ++ + + HT + + S S+D TIR+W ++
Sbjct: 283 VVSGSYDNTLIVWDVAQ--MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE 340
Query: 1109 PEEI-HCLQVH 1118
E+ + LQ H
Sbjct: 341 NGELMYTLQGH 351
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 33.9 bits (76), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 1049 VLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIK 1108
V++ D I+++DS + + + ++ H V L G L SGS D+T+RVW IK
Sbjct: 135 VITGADDKXIRVYDSINK--KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIK 191
Query: 1109 PE-EIHCLQVHN 1119
H + HN
Sbjct: 192 KGCCTHVFEGHN 203
Score = 33.5 bits (75), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 1033 SSTNGEVLSLIHLKGRVLSSHS-DGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGD 1091
S +G V +L + G +L S S D T+++WD K + E H V CL + +
Sbjct: 159 SGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFE--GHNSTVRCLDIVEYKN 216
Query: 1092 KLY--SGSLDKTIRVWSIKPE 1110
Y +GS D T+ VW + E
Sbjct: 217 IKYIVTGSRDNTLHVWKLPKE 237
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 33.5 bits (75), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 343 DFVCPITGQIFNDPVTLETGQTYERKAIQEWLKRGNTTCPITRQPL 388
+ C I + F + VTL ++ I EW+KR CPI R+ +
Sbjct: 64 ELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRK-IECPICRKDI 108
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 15/90 (16%)
Query: 1049 VLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIK 1108
++S D +K+WD RL+ +++ HT VT + V G S D R+W +
Sbjct: 169 IVSGGWDNLVKVWDLATG--RLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLT 226
Query: 1109 PEEIHCLQVHNVKEAVHELTANAEI--ACF 1136
EA+ E+ A A I CF
Sbjct: 227 K-----------GEALSEMAAGAPINQICF 245
Score = 30.4 bits (67), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 1050 LSSHSDGTIKMWD--SGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSI 1107
+S+ D ++++W+ +G+ + + HT+ V + ++ SG D +RVW++
Sbjct: 83 VSASWDHSLRLWNLQNGQCQYKFLG----HTKDVLSVAFSPDNRQIVSGGRDNALRVWNV 138
Query: 1108 KPEEIHCL 1115
K E +H L
Sbjct: 139 KGECMHTL 146
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 9/95 (9%)
Query: 1040 LSLIHLKGRVLSSHSDGTIKMWDSGKRVLRLIQEV--REHTRAVTCLYVPSSGDKLYSGS 1097
L+ + +G +++S S G +++W+ + ++ + EH V+ + V SSG + SGS
Sbjct: 88 LTWVGERGILVASDS-GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGS 146
Query: 1098 LDKTIRVWSIKPEEI------HCLQVHNVKEAVHE 1126
D I+VW + + + H QV V + H+
Sbjct: 147 KDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHK 181
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 33.1 bits (74), Expect = 1.1, Method: Composition-based stats.
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 12/103 (11%)
Query: 1029 TELDSSTNGEVLSLIHLK----------GRVLSSHS-DGTIKMWDSGKRVLRLIQEVREH 1077
TE DS VLS H + G L+S S D T +W + + + H
Sbjct: 45 TEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGH 104
Query: 1078 TRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPE-EIHCLQVHN 1119
V + SG+ L + S DK++ VW + E E C+ V N
Sbjct: 105 ENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLN 147
Score = 30.8 bits (68), Expect = 5.4, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 1022 LWHCNE------VTELDSSTNGEVLSLIHLKGRVLSSHS-DGTIKMWDSGKRVLRLIQEV 1074
+W +E V+ L+S T + H +L+S S D T+K++ + +
Sbjct: 131 VWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATL 190
Query: 1075 REHTRAVTCLYVPSSGDKLYSGSLDKTIRVW 1105
H V L SG +L S S D+T+R+W
Sbjct: 191 EGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 1048 RVLSSHSDGTIKMWDSGKRVLRLIQEVRE-HTRAVTCL-YVPSS-GDKLYSGSLDKTIRV 1104
+++S+ D TIK+W++ I E E H V+C+ + P++ + S S DKT++V
Sbjct: 486 QIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKV 545
Query: 1105 WSI 1107
W++
Sbjct: 546 WNL 548
Score = 30.0 bits (66), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 1050 LSSHSDGTIKMWD--SGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWS 1106
LS DG +++WD +G R + HT+ V + ++ S S D+TI++W+
Sbjct: 446 LSGSWDGELRLWDLAAGVSTRRFVG----HTKDVLSVAFSLDNRQIVSASRDRTIKLWN 500
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 10/109 (9%)
Query: 998 KKYSAVVTDIQKALMNLSSVNATELWHCNEVTELDSSTNGEVLSLIHLKGRVLSSHSDGT 1057
+K++ V D + ++++ + W ++ N +V + GR++S DGT
Sbjct: 265 QKFATVGADATIRVWDVTTSKCVQKWTLDK----QQLGNQQVGVVATGNGRIISLSLDGT 320
Query: 1058 IKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWS 1106
+ ++ G +++ + H + +T L V + L SGS D I WS
Sbjct: 321 LNFYELGHD--EVLKTISGHNKGITALTV----NPLISGSYDGRIMEWS 363
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 21/78 (26%)
Query: 1049 VLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPS---------SGDKLYSGSLD 1099
+LS+ DGT+++W G + + C Y S DK+ S S+D
Sbjct: 262 LLSASDDGTLRIWHGG------------NGNSQNCFYGHSQSIVSASWVGDDKVISCSMD 309
Query: 1100 KTIRVWSIKPEEIHCLQV 1117
++R+WS+K + L +
Sbjct: 310 GSVRLWSLKQNTLLALSI 327
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 31.6 bits (70), Expect = 2.9, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 11/102 (10%)
Query: 1024 HCNEVTELDSSTNGEVLSLIHLKGRVLSSHSDGTIKMW--DSGKRVLRLIQEVREHTRAV 1081
H NEV + S +G L+ + D ++ +W D I ++EH++ V
Sbjct: 106 HENEVKGVAWSNDGYYLA---------TCSRDKSVWIWETDESGEEYECISVLQEHSQDV 156
Query: 1082 TCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEA 1123
+ S L S S D T+R+W ++ C+ V N E
Sbjct: 157 KHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEG 198
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 31.2 bits (69), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 49/108 (45%), Gaps = 10/108 (9%)
Query: 998 KKYSAVVTDIQKALMNLSSVNATELWHCNEVTELDSSTNGEVLSLIHLKGRVLSSHSDGT 1057
+K++ V D + ++++ + W ++ N +V + GR++S DGT
Sbjct: 265 QKFATVGADATIRVWDVTTSKCVQKWTLDK----QQLGNQQVGVVATGNGRIISLSLDGT 320
Query: 1058 IKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVW 1105
+ ++ G +++ + H + +T L V + L SGS D I W
Sbjct: 321 LNFYELGHD--EVLKTISGHNKGITALTV----NPLISGSYDGRIXEW 362
>pdb|2B5L|A Chain A, Crystal Structure Of Ddb1 In Complex With Simian Virus 5 V
Protein
pdb|2B5L|B Chain B, Crystal Structure Of Ddb1 In Complex With Simian Virus 5 V
Protein
pdb|2B5M|A Chain A, Crystal Structure Of Ddb1
pdb|2HYE|A Chain A, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 1140
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 1029 TELDSSTNGEVLSLIHLKGRVLSSHSDGTIKM--WDSGKRVLRLIQEVREHTRAVTCLYV 1086
T + G V S++ G++L+S + T+++ W + K V + H + LY+
Sbjct: 860 TVAEKEVKGAVYSMVEFNGKLLAS-INSTVRLYEWTTEKDV----RTECNHYNNIMALYL 914
Query: 1087 PSSGDKLYSGSLDKTIRVWSIKPEE 1111
+ GD + G L +++ + + KP E
Sbjct: 915 KTKGDFILVGDLMRSVLLLAYKPME 939
>pdb|4A0L|A Chain A, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|C Chain C, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 1144
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 1029 TELDSSTNGEVLSLIHLKGRVLSSHSDGTIKMWDSGKRVLRLIQEVR---EHTRAVTCLY 1085
T + G V S++ G++L+S + T+++++ +E+R H + LY
Sbjct: 864 TVAEKEVKGAVYSMVEFNGKLLAS-INSTVRLYEWTTE-----KELRTECNHYNNIMALY 917
Query: 1086 VPSSGDKLYSGSLDKTIRVWSIKPEE 1111
+ + GD + G L +++ + + KP E
Sbjct: 918 LKTKGDFILVGDLMRSVLLLAYKPME 943
>pdb|3I7H|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Hbx
pdb|3I7K|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Whx
pdb|3I7L|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Ddb2
pdb|3I7N|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Wdtc1
pdb|3I7O|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Iqwd1
pdb|3I7P|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Wdr40a
pdb|3I89|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Wdr22
pdb|3I8C|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Wdr21a
pdb|3I8E|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Wdr42a
pdb|3I8E|B Chain B, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Wdr42a
Length = 1143
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 1029 TELDSSTNGEVLSLIHLKGRVLSSHSDGTIKM--WDSGKRVLRLIQEVREHTRAVTCLYV 1086
T + G V S++ G++L+S + T+++ W + K V + H + LY+
Sbjct: 863 TVAEKEVKGAVYSMVEFNGKLLAS-INSTVRLYEWTTEKDV----RTECNHYNNIMALYL 917
Query: 1087 PSSGDKLYSGSLDKTIRVWSIKPEE 1111
+ GD + G L +++ + + KP E
Sbjct: 918 KTKGDFILVGDLMRSVLLLAYKPME 942
>pdb|4A0B|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|C Chain C, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
Length = 1159
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 1029 TELDSSTNGEVLSLIHLKGRVLSSHSDGTIKMWDSGKRVLRLIQEVR---EHTRAVTCLY 1085
T + G V S++ G++L+S + T+++++ +E+R H + LY
Sbjct: 879 TVAEKEVKGAVYSMVEFNGKLLAS-INSTVRLYEWTTE-----KELRTECNHYNNIMALY 932
Query: 1086 VPSSGDKLYSGSLDKTIRVWSIKPEE 1111
+ + GD + G L +++ + + KP E
Sbjct: 933 LKTKGDFILVGDLMRSVLLLAYKPME 958
>pdb|4A08|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
Length = 1159
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 1029 TELDSSTNGEVLSLIHLKGRVLSSHSDGTIKMWDSGKRVLRLIQEVR---EHTRAVTCLY 1085
T + G V S++ G++L+S + T+++++ +E+R H + LY
Sbjct: 879 TVAEKEVKGAVYSMVEFNGKLLAS-INSTVRLYEWTTE-----KELRTECNHYNNIMALY 932
Query: 1086 VPSSGDKLYSGSLDKTIRVWSIKPEE 1111
+ + GD + G L +++ + + KP E
Sbjct: 933 LKTKGDFILVGDLMRSVLLLAYKPME 958
>pdb|3EI4|A Chain A, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|C Chain C, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|E Chain E, Structure Of The Hsddb1-Hsddb2 Complex
Length = 1158
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 1029 TELDSSTNGEVLSLIHLKGRVLSSHSDGTIKM--WDSGKRVLRLIQEVREHTRAVTCLYV 1086
T + G V S++ G++L+S + T+++ W + K V + H + LY+
Sbjct: 878 TVAEKEVKGAVYSMVEFNGKLLAS-INSTVRLYEWTTEKDV----RTECNHYNNIMALYL 932
Query: 1087 PSSGDKLYSGSLDKTIRVWSIKPEE 1111
+ GD + G L +++ + + KP E
Sbjct: 933 KTKGDFILVGDLMRSVLLLAYKPME 957
>pdb|4A0A|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
Length = 1159
Score = 31.2 bits (69), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 1029 TELDSSTNGEVLSLIHLKGRVLSSHSDGTIKMWDSGKRVLRLIQEVR---EHTRAVTCLY 1085
T + G V S++ G++L+S + T+++++ +E+R H + LY
Sbjct: 879 TVAEKEVKGAVYSMVEFNGKLLAS-INSTVRLYEWTTE-----KELRTECNHYNNIMALY 932
Query: 1086 VPSSGDKLYSGSLDKTIRVWSIKPEE 1111
+ + GD + G L +++ + + KP E
Sbjct: 933 LKTKGDFILVGDLMRSVLLLAYKPME 958
>pdb|3E0C|A Chain A, Crystal Structure Of Dna Damage-Binding Protein 1(Ddb1)
Length = 1140
Score = 31.2 bits (69), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 1029 TELDSSTNGEVLSLIHLKGRVLSSHSDGTIKMWDSGKRVLRLIQEVR---EHTRAVTCLY 1085
T + G V S++ G++L+S + T+++++ +E+R H + LY
Sbjct: 860 TVAEKEVKGAVYSMVEFNGKLLAS-INSTVRLYEWTTE-----KELRTECNHYNNIMALY 913
Query: 1086 VPSSGDKLYSGSLDKTIRVWSIKPEE 1111
+ + GD + G L +++ + + KP E
Sbjct: 914 LKTKGDFILVGDLMRSVLLLAYKPME 939
>pdb|4E54|A Chain A, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb)
Dimerization And Its Roles In Chromatinized Dna Repair
pdb|4E5Z|A Chain A, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb)
Dimerization And Its Roles In Chromatinized Dna Repair
Length = 1150
Score = 31.2 bits (69), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 1029 TELDSSTNGEVLSLIHLKGRVLSSHSDGTIKMWDSGKRVLRLIQEVR---EHTRAVTCLY 1085
T + G V S++ G++L+S + T+++++ +E+R H + LY
Sbjct: 870 TVAEKEVKGAVYSMVEFNGKLLAS-INSTVRLYEWTTE-----KELRTECNHYNNIMALY 923
Query: 1086 VPSSGDKLYSGSLDKTIRVWSIKPEE 1111
+ + GD + G L +++ + + KP E
Sbjct: 924 LKTKGDFILVGDLMRSVLLLAYKPME 949
>pdb|4A11|A Chain A, Structure Of The Hsddb1-Hscsa Complex
pdb|4A0K|C Chain C, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 1159
Score = 31.2 bits (69), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 1029 TELDSSTNGEVLSLIHLKGRVLSSHSDGTIKMWDSGKRVLRLIQEVR---EHTRAVTCLY 1085
T + G V S++ G++L+S + T+++++ +E+R H + LY
Sbjct: 879 TVAEKEVKGAVYSMVEFNGKLLAS-INSTVRLYEWTTE-----KELRTECNHYNNIMALY 932
Query: 1086 VPSSGDKLYSGSLDKTIRVWSIKPEE 1111
+ + GD + G L +++ + + KP E
Sbjct: 933 LKTKGDFILVGDLMRSVLLLAYKPME 958
>pdb|3EI1|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4 Photoproduct
Containing Dna-Duplex
pdb|3EI2|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|A Chain A, Structure Of The Hsddb1-Drddb2 Complex
Length = 1158
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 1029 TELDSSTNGEVLSLIHLKGRVLSSHSDGTIKMWDSGKRVLRLIQEVR---EHTRAVTCLY 1085
T + G V S++ G++L+S + T+++++ +E+R H + LY
Sbjct: 878 TVAEKEVKGAVYSMVEFNGKLLAS-INSTVRLYEWTTE-----KELRTECNHYNNIMALY 931
Query: 1086 VPSSGDKLYSGSLDKTIRVWSIKPEE 1111
+ + GD + G L +++ + + KP E
Sbjct: 932 LKTKGDFILVGDLMRSVLLLAYKPME 957
>pdb|3MA8|A Chain A, Crystal Structure Of Cgd1_2040, A Pyruvate Kinase From
Cryptosporidium Parvum
pdb|3MA8|B Chain B, Crystal Structure Of Cgd1_2040, A Pyruvate Kinase From
Cryptosporidium Parvum
Length = 534
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 66/164 (40%), Gaps = 23/164 (14%)
Query: 538 GFAEILSASLSREVLRTSVYILSELMVADESVGDILTSVDSDFDCLAALLKNGLGEAAVL 597
G +E +S S S +L SV I S +++AD S+ + + DF L +GE +
Sbjct: 152 GNSECISCSYS--LLPKSVQIGSTVLIADGSLSTQVLEIGDDFIVCKVLNSVTIGERKNM 209
Query: 598 ----IYQLRPAFAQLSAHEFIPSLVQLVLNKTEEFDELQFVMEPKDAAIEMLEQILMGGD 653
P H+ +V L +F L FV D +++ QI+
Sbjct: 210 NLPGCKVHLPIIGDKDRHD----IVDFALKYNLDFIALSFVQNGAD--VQLCRQIISENT 263
Query: 654 KKSRSITALSLISANGIPALIKCLDRVEVRRSIVSILLCCMHAD 697
+ S NGIP+ IK + ++E +++ C +D
Sbjct: 264 QYS-----------NGIPSSIKIISKIENLEGVINFDSICSESD 296
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 1055 DGTIKMWDS-GKRVLRLIQEVREHTRAVTCL-YVPSSGDKLYSGSLDKTIRVWSIK 1108
D + +WD+ + V HT V CL + P S L +GS DKT+ +W ++
Sbjct: 253 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 308
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 30.8 bits (68), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 1055 DGTIKMWDS-GKRVLRLIQEVREHTRAVTCL-YVPSSGDKLYSGSLDKTIRVWSIK 1108
D + +WD+ + V HT V CL + P S L +GS DKT+ +W ++
Sbjct: 255 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 310
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From
Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes From
Xenopus Laevis
Length = 357
Score = 30.8 bits (68), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 9/98 (9%)
Query: 1040 LSLIHLKGRVLSSHSDGTIKMWDSGKRVLRLIQEVR--EHTRAVTCLYVPSSGDKLYSGS 1097
++ + KG +++S S G +++W+ ++ L+ + EH V L V S G + SG
Sbjct: 100 VAWVSEKGILVASDS-GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGG 158
Query: 1098 LDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIAC 1135
D +++VW + + + L+ +N H N AC
Sbjct: 159 KDFSVKVWDLSQKAV--LKSYN----AHSSEVNCVAAC 190
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 30.8 bits (68), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 1055 DGTIKMWDS-GKRVLRLIQEVREHTRAVTCL-YVPSSGDKLYSGSLDKTIRVWSIK 1108
D + +WD+ + V HT V CL + P S L +GS DKT+ +W ++
Sbjct: 249 DQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 304
>pdb|4DRS|A Chain A, Crystal Structure Of Cryptosporidium Parvum Pyruvate
Kinase
pdb|4DRS|B Chain B, Crystal Structure Of Cryptosporidium Parvum Pyruvate
Kinase
Length = 526
Score = 30.8 bits (68), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 66/164 (40%), Gaps = 23/164 (14%)
Query: 538 GFAEILSASLSREVLRTSVYILSELMVADESVGDILTSVDSDFDCLAALLKNGLGEAAVL 597
G +E +S S S +L SV I S +++AD S+ + + DF L +GE +
Sbjct: 144 GNSECISCSYS--LLPKSVQIGSTVLIADGSLSTQVLEIGDDFIVCKVLNSVTIGERKNM 201
Query: 598 ----IYQLRPAFAQLSAHEFIPSLVQLVLNKTEEFDELQFVMEPKDAAIEMLEQILMGGD 653
P H+ +V L +F L FV D +++ QI+
Sbjct: 202 NLPGCKVHLPIIGDKDRHD----IVDFALKYNLDFIALSFVQNGAD--VQLCRQIISENT 255
Query: 654 KKSRSITALSLISANGIPALIKCLDRVEVRRSIVSILLCCMHAD 697
+ S NGIP+ IK + ++E +++ C +D
Sbjct: 256 QYS-----------NGIPSSIKIISKIENLEGVINFDSICSESD 288
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 30.4 bits (67), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 1055 DGTIKMWDS-GKRVLRLIQEVREHTRAVTCL-YVPSSGDKLYSGSLDKTIRVWSIK 1108
D + +WD+ + V HT V CL + P S L +GS DKT+ +W ++
Sbjct: 257 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 312
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 30.4 bits (67), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 15/101 (14%)
Query: 1048 RVLSSHSDGTIKMW--DSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVW 1105
R+ S +D T++++ ++G+++L E++ H V C + + + S+DK +++W
Sbjct: 635 RIASCGADKTLQVFKAETGEKLL----EIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIW 690
Query: 1106 -SIKPEEIHCLQVHN--------VKEAVHELTANAEIACFV 1137
S+ E +H H+ + H L A CF+
Sbjct: 691 NSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFL 731
Score = 30.0 bits (66), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 11/77 (14%)
Query: 1048 RVLSSHSDGTIKMWD--SGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVW 1105
R+LS DGT+K+W+ +G + + H V + K S S DKT ++W
Sbjct: 1063 RLLSWSFDGTVKVWNIITGNKEKDFVC----HQGTVLSCDISHDATKFSSTSADKTAKIW 1118
Query: 1106 SIK---PEEIHCLQVHN 1119
S P +H L+ HN
Sbjct: 1119 SFDLLLP--LHELRGHN 1133
Score = 30.0 bits (66), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 1037 GEVLS--LIHLKGRVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLY 1094
G VLS + H + S+ +D T K+W +L + E+R H V C L
Sbjct: 1092 GTVLSCDISHDATKFSSTSADKTAKIWSFD--LLLPLHELRGHNGCVRCSAFSVDSTLLA 1149
Query: 1095 SGSLDKTIRVWSIKPEEI 1112
+G + IR+W++ E+
Sbjct: 1150 TGDDNGEIRIWNVSNGEL 1167
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,080,413
Number of Sequences: 62578
Number of extensions: 1422431
Number of successful extensions: 3551
Number of sequences better than 100.0: 87
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 3286
Number of HSP's gapped (non-prelim): 243
length of query: 1306
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1196
effective length of database: 8,089,757
effective search space: 9675349372
effective search space used: 9675349372
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)