Query 000744
Match_columns 1306
No_of_seqs 1124 out of 5232
Neff 7.8
Searched_HMMs 46136
Date Mon Apr 1 23:01:19 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000744.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000744hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 1.8E-38 3.9E-43 344.2 26.4 301 991-1306 105-467 (480)
2 KOG0271 Notchless-like WD40 re 100.0 1.7E-34 3.8E-39 313.3 18.2 268 992-1271 148-479 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 5.4E-34 1.2E-38 314.1 20.0 248 1009-1306 188-446 (459)
4 KOG0279 G protein beta subunit 100.0 1.1E-31 2.4E-36 282.5 27.4 267 993-1305 7-298 (315)
5 KOG0273 Beta-transducin family 100.0 3E-29 6.4E-34 279.7 28.4 287 1000-1305 177-508 (524)
6 KOG0286 G-protein beta subunit 100.0 2.2E-28 4.8E-33 258.8 31.7 266 991-1305 45-330 (343)
7 KOG0315 G-protein beta subunit 100.0 3.2E-28 7E-33 252.0 29.8 281 1009-1299 11-309 (311)
8 KOG0272 U4/U6 small nuclear ri 100.0 5.1E-30 1.1E-34 282.8 16.4 234 992-1271 208-458 (459)
9 KOG0285 Pleiotropic regulator 100.0 1E-28 2.2E-33 266.6 21.6 267 992-1306 142-425 (460)
10 KOG0295 WD40 repeat-containing 100.0 1.5E-27 3.4E-32 259.0 23.9 269 994-1272 101-405 (406)
11 KOG0279 G protein beta subunit 100.0 2.7E-27 5.8E-32 249.5 24.9 239 989-1274 51-314 (315)
12 KOG0281 Beta-TrCP (transducin 100.0 1.5E-28 3.1E-33 263.7 13.7 265 1001-1278 197-482 (499)
13 KOG0316 Conserved WD40 repeat- 100.0 2.6E-27 5.6E-32 243.4 22.2 259 993-1302 9-282 (307)
14 KOG0319 WD40-repeat-containing 100.0 4E-27 8.6E-32 275.1 26.5 308 992-1306 95-563 (775)
15 KOG0318 WD40 repeat stress pro 100.0 4.2E-26 9.1E-31 257.4 32.4 309 988-1306 134-546 (603)
16 KOG0293 WD40 repeat-containing 100.0 5.3E-27 1.2E-31 257.3 24.0 269 992-1274 215-514 (519)
17 KOG0265 U5 snRNP-specific prot 100.0 9.7E-27 2.1E-31 247.5 23.3 265 990-1305 36-323 (338)
18 KOG0281 Beta-TrCP (transducin 99.9 6E-28 1.3E-32 259.0 12.8 245 1035-1299 196-458 (499)
19 KOG0263 Transcription initiati 99.9 8.8E-27 1.9E-31 275.8 23.9 220 1008-1274 390-650 (707)
20 KOG0276 Vesicle coat complex C 99.9 1.9E-26 4.1E-31 263.7 22.4 260 995-1305 7-284 (794)
21 KOG0645 WD40 repeat protein [G 99.9 7.2E-25 1.6E-29 230.3 29.9 268 992-1273 5-311 (312)
22 KOG0318 WD40 repeat stress pro 99.9 1.6E-24 3.4E-29 244.7 32.6 304 990-1303 179-586 (603)
23 KOG0319 WD40-repeat-containing 99.9 8.5E-26 1.8E-30 264.1 21.8 280 985-1305 307-604 (775)
24 KOG0295 WD40 repeat-containing 99.9 1.8E-25 3.9E-30 243.0 22.2 268 1022-1305 93-391 (406)
25 KOG0313 Microtubule binding pr 99.9 5.3E-25 1.2E-29 240.4 25.1 279 999-1302 103-401 (423)
26 KOG0296 Angio-associated migra 99.9 1.4E-24 3.1E-29 236.2 28.3 298 992-1306 55-384 (399)
27 KOG0282 mRNA splicing factor [ 99.9 5E-26 1.1E-30 255.4 16.9 271 992-1271 205-503 (503)
28 KOG0286 G-protein beta subunit 99.9 2.1E-24 4.6E-29 228.7 27.5 233 1029-1305 48-288 (343)
29 KOG0284 Polyadenylation factor 99.9 3.1E-26 6.6E-31 251.8 13.4 246 1009-1306 109-366 (464)
30 cd00200 WD40 WD40 domain, foun 99.9 7.5E-24 1.6E-28 238.1 33.4 261 994-1306 2-277 (289)
31 KOG0291 WD40-repeat-containing 99.9 1E-23 2.2E-28 246.3 34.6 286 1009-1306 278-598 (893)
32 PLN00181 protein SPA1-RELATED; 99.9 9.3E-24 2E-28 275.6 37.3 266 996-1272 478-792 (793)
33 KOG0266 WD40 repeat-containing 99.9 2.2E-24 4.8E-29 262.8 29.2 247 1009-1306 172-438 (456)
34 KOG0292 Vesicle coat complex C 99.9 8.9E-25 1.9E-29 257.8 23.5 252 1009-1306 22-308 (1202)
35 KOG0288 WD40 repeat protein Ti 99.9 3.4E-25 7.3E-30 244.1 16.7 261 994-1306 168-447 (459)
36 KOG0315 G-protein beta subunit 99.9 1.4E-23 3E-28 217.8 26.9 245 1048-1306 12-274 (311)
37 KOG0263 Transcription initiati 99.9 1.3E-24 2.7E-29 257.6 20.8 222 1036-1306 378-635 (707)
38 KOG0273 Beta-transducin family 99.9 2.1E-23 4.5E-28 233.3 29.3 253 1009-1273 248-523 (524)
39 KOG0291 WD40-repeat-containing 99.9 1.2E-22 2.5E-27 237.6 34.4 301 992-1306 136-494 (893)
40 KOG0285 Pleiotropic regulator 99.9 4.5E-24 9.7E-29 230.8 19.1 225 1028-1305 143-375 (460)
41 KOG0306 WD40-repeat-containing 99.9 1.1E-23 2.3E-28 246.1 23.2 271 995-1306 367-650 (888)
42 KOG0275 Conserved WD40 repeat- 99.9 6.6E-24 1.4E-28 225.9 19.5 247 1009-1306 226-495 (508)
43 KOG0274 Cdc4 and related F-box 99.9 3.7E-23 8E-28 251.5 28.7 257 1009-1281 219-490 (537)
44 KOG0284 Polyadenylation factor 99.9 8.4E-25 1.8E-29 240.5 12.9 233 995-1273 132-380 (464)
45 KOG0276 Vesicle coat complex C 99.9 1.5E-23 3.2E-28 240.3 21.5 215 1009-1269 68-295 (794)
46 KOG0292 Vesicle coat complex C 99.9 3.1E-23 6.6E-28 244.9 24.3 264 992-1273 42-321 (1202)
47 KOG0645 WD40 repeat protein [G 99.9 3.7E-22 8E-27 210.0 28.8 261 1029-1301 7-291 (312)
48 KOG0296 Angio-associated migra 99.9 1.1E-22 2.4E-27 221.6 25.5 281 971-1273 87-398 (399)
49 KOG0266 WD40 repeat-containing 99.9 9E-23 1.9E-27 248.7 26.1 241 993-1273 195-454 (456)
50 PTZ00420 coronin; Provisional 99.9 5.7E-22 1.2E-26 241.9 32.2 249 1013-1302 49-318 (568)
51 KOG0313 Microtubule binding pr 99.9 8.4E-23 1.8E-27 223.4 22.0 238 992-1273 135-418 (423)
52 KOG0274 Cdc4 and related F-box 99.9 2.3E-22 4.9E-27 244.7 27.8 250 1034-1299 206-463 (537)
53 KOG0283 WD40 repeat-containing 99.9 7.2E-23 1.6E-27 244.9 22.1 237 995-1274 260-577 (712)
54 KOG0293 WD40 repeat-containing 99.9 1.4E-22 3.1E-27 222.8 22.6 263 1028-1303 216-495 (519)
55 KOG0278 Serine/threonine kinas 99.9 3.4E-23 7.3E-28 214.7 16.3 260 1030-1305 8-282 (334)
56 KOG0265 U5 snRNP-specific prot 99.9 2.5E-22 5.4E-27 214.0 22.7 230 1029-1305 40-281 (338)
57 PTZ00421 coronin; Provisional 99.9 2.8E-21 6.1E-26 235.0 34.5 223 1031-1301 70-314 (493)
58 KOG0643 Translation initiation 99.9 3.8E-22 8.1E-27 209.2 22.2 260 1031-1305 5-302 (327)
59 KOG0647 mRNA export protein (c 99.9 6.3E-22 1.4E-26 211.0 23.5 244 1009-1306 41-309 (347)
60 KOG0306 WD40-repeat-containing 99.9 1.5E-21 3.3E-26 228.3 28.4 285 1009-1306 78-524 (888)
61 KOG1407 WD40 repeat protein [F 99.9 1.7E-21 3.7E-26 203.9 25.8 258 995-1264 14-293 (313)
62 KOG0301 Phospholipase A2-activ 99.9 5.8E-22 1.3E-26 230.7 24.6 266 991-1273 4-288 (745)
63 KOG0282 mRNA splicing factor [ 99.9 1.2E-22 2.7E-27 228.3 18.0 265 1023-1302 201-486 (503)
64 KOG0277 Peroxisomal targeting 99.9 2E-22 4.4E-27 209.9 16.8 217 1009-1272 74-308 (311)
65 PLN00181 protein SPA1-RELATED; 99.9 1.5E-20 3.3E-25 245.5 38.5 279 1017-1306 457-779 (793)
66 KOG0294 WD40 repeat-containing 99.9 2.1E-21 4.5E-26 208.1 24.4 246 991-1254 33-306 (362)
67 KOG1539 WD repeat protein [Gen 99.9 1.3E-20 2.9E-25 223.1 31.6 304 991-1306 192-633 (910)
68 KOG0278 Serine/threonine kinas 99.9 4.6E-22 1E-26 206.3 16.2 275 994-1278 7-302 (334)
69 KOG1036 Mitotic spindle checkp 99.9 5.9E-21 1.3E-25 204.8 24.5 246 1009-1306 26-290 (323)
70 KOG1407 WD40 repeat protein [F 99.9 6.1E-21 1.3E-25 199.7 23.9 253 1032-1306 16-288 (313)
71 cd00200 WD40 WD40 domain, foun 99.9 3E-20 6.5E-25 208.7 29.2 223 1032-1306 5-235 (289)
72 KOG0275 Conserved WD40 repeat- 99.9 6.6E-22 1.4E-26 210.8 14.5 229 1029-1305 206-452 (508)
73 KOG0310 Conserved WD40 repeat- 99.9 8.8E-21 1.9E-25 214.0 22.7 265 1020-1306 11-295 (487)
74 KOG1446 Histone H3 (Lys4) meth 99.9 1.1E-19 2.4E-24 196.2 29.8 264 994-1305 7-290 (311)
75 KOG0640 mRNA cleavage stimulat 99.9 7.9E-21 1.7E-25 202.2 20.3 266 1029-1304 105-410 (430)
76 KOG0283 WD40 repeat-containing 99.9 5.5E-21 1.2E-25 228.9 21.4 230 1029-1306 260-562 (712)
77 KOG0277 Peroxisomal targeting 99.9 4.7E-21 1E-25 199.8 17.9 233 1017-1301 37-289 (311)
78 KOG0310 Conserved WD40 repeat- 99.9 1.3E-20 2.9E-25 212.6 22.9 221 1009-1274 81-310 (487)
79 KOG0300 WD40 repeat-containing 99.9 1.1E-20 2.4E-25 201.2 20.9 275 991-1275 138-478 (481)
80 KOG0772 Uncharacterized conser 99.9 1.1E-20 2.3E-25 213.0 21.0 264 995-1303 161-470 (641)
81 KOG0268 Sof1-like rRNA process 99.9 1.9E-21 4.1E-26 211.4 12.8 256 1033-1306 63-331 (433)
82 KOG0268 Sof1-like rRNA process 99.9 3.7E-21 8E-26 209.1 14.9 273 994-1281 59-353 (433)
83 KOG0289 mRNA splicing factor [ 99.9 5.7E-20 1.2E-24 203.9 24.2 249 1009-1306 232-492 (506)
84 KOG0299 U3 snoRNP-associated p 99.9 6.6E-20 1.4E-24 205.5 24.5 258 1030-1305 136-440 (479)
85 PTZ00421 coronin; Provisional 99.9 2.1E-19 4.5E-24 218.7 31.1 235 995-1274 69-332 (493)
86 KOG0316 Conserved WD40 repeat- 99.9 3.4E-20 7.4E-25 191.2 20.3 252 965-1272 33-298 (307)
87 KOG0305 Anaphase promoting com 99.9 4.9E-20 1.1E-24 216.4 24.3 246 1009-1306 189-447 (484)
88 KOG0308 Conserved WD40 repeat- 99.9 7E-21 1.5E-25 220.1 16.8 233 1009-1275 38-287 (735)
89 KOG0643 Translation initiation 99.9 1.6E-19 3.5E-24 189.6 25.4 269 996-1274 5-318 (327)
90 PLN03200 cellulose synthase-in 99.8 3.6E-20 7.9E-25 245.4 24.4 325 486-833 401-767 (2102)
91 KOG0640 mRNA cleavage stimulat 99.8 5.2E-20 1.1E-24 196.1 20.7 255 1009-1273 125-426 (430)
92 KOG0641 WD40 repeat protein [G 99.8 7.9E-19 1.7E-23 179.4 28.4 266 1035-1302 31-331 (350)
93 KOG1408 WD40 repeat protein [F 99.8 4.1E-20 8.8E-25 214.0 20.9 258 1009-1274 393-714 (1080)
94 KOG0299 U3 snoRNP-associated p 99.8 1.5E-19 3.3E-24 202.5 24.1 273 994-1270 135-453 (479)
95 PLN03200 cellulose synthase-in 99.8 7.7E-20 1.7E-24 242.4 25.5 318 485-830 442-811 (2102)
96 KOG1332 Vesicle coat complex C 99.8 6.1E-20 1.3E-24 190.6 19.2 248 997-1273 7-286 (299)
97 KOG0973 Histone transcription 99.8 1.1E-19 2.5E-24 222.4 24.3 256 1009-1305 26-340 (942)
98 PTZ00420 coronin; Provisional 99.8 4.4E-19 9.6E-24 216.7 29.2 225 992-1256 65-317 (568)
99 KOG0289 mRNA splicing factor [ 99.8 2.9E-19 6.2E-24 198.4 22.3 224 1036-1306 219-448 (506)
100 KOG1408 WD40 repeat protein [F 99.8 5.7E-19 1.2E-23 204.6 25.2 291 1009-1306 337-699 (1080)
101 KOG0300 WD40 repeat-containing 99.8 1.6E-19 3.4E-24 192.5 18.7 257 1030-1305 142-413 (481)
102 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 1.5E-17 3.2E-22 191.3 36.6 279 1009-1300 2-300 (300)
103 KOG0301 Phospholipase A2-activ 99.8 8.5E-19 1.8E-23 204.6 24.6 257 1028-1305 6-274 (745)
104 KOG0294 WD40 repeat-containing 99.8 5.2E-18 1.1E-22 182.3 28.2 270 1011-1299 4-306 (362)
105 KOG0264 Nucleosome remodeling 99.8 5E-19 1.1E-23 198.9 20.0 233 999-1274 122-405 (422)
106 KOG0305 Anaphase promoting com 99.8 9.9E-19 2.1E-23 205.4 23.3 230 1001-1275 217-463 (484)
107 KOG0288 WD40 repeat protein Ti 99.8 3.7E-19 8.1E-24 196.8 18.1 235 993-1271 211-459 (459)
108 KOG1332 Vesicle coat complex C 99.8 2.1E-19 4.5E-24 186.7 14.5 233 1029-1306 4-272 (299)
109 KOG1063 RNA polymerase II elon 99.8 1.8E-18 4E-23 201.6 22.3 302 989-1300 179-674 (764)
110 KOG0267 Microtubule severing p 99.8 5.9E-20 1.3E-24 214.6 9.7 239 1011-1305 7-253 (825)
111 KOG1539 WD repeat protein [Gen 99.8 3.7E-17 8E-22 194.3 33.1 293 1009-1306 173-592 (910)
112 KOG2106 Uncharacterized conser 99.8 4.5E-17 9.8E-22 183.7 31.9 280 1009-1306 214-507 (626)
113 KOG0308 Conserved WD40 repeat- 99.8 4.2E-19 9.2E-24 205.5 15.8 212 1048-1301 39-266 (735)
114 KOG0973 Histone transcription 99.8 1.8E-18 3.8E-23 212.1 22.1 246 990-1275 58-357 (942)
115 KOG0772 Uncharacterized conser 99.8 8.2E-19 1.8E-23 198.0 16.6 230 1072-1306 161-425 (641)
116 KOG0270 WD40 repeat-containing 99.8 1.4E-18 3E-23 194.2 17.8 224 1009-1279 193-455 (463)
117 KOG0267 Microtubule severing p 99.8 8.3E-20 1.8E-24 213.3 8.5 224 995-1264 22-259 (825)
118 KOG0646 WD40 repeat protein [G 99.8 3.2E-18 7E-23 192.4 19.9 249 1009-1300 51-329 (476)
119 KOG0269 WD40 repeat-containing 99.8 9.3E-19 2E-23 206.3 14.5 226 1009-1275 101-342 (839)
120 KOG0269 WD40 repeat-containing 99.8 2.4E-18 5.3E-23 202.8 17.6 211 1039-1300 90-319 (839)
121 KOG0264 Nucleosome remodeling 99.8 4.8E-18 1E-22 191.1 18.7 235 1032-1305 120-388 (422)
122 KOG2096 WD40 repeat protein [G 99.8 2.1E-17 4.5E-22 177.2 21.9 267 994-1306 79-389 (420)
123 KOG1274 WD40 repeat protein [G 99.8 7.4E-17 1.6E-21 193.9 26.4 244 1009-1304 26-284 (933)
124 KOG0321 WD40 repeat-containing 99.8 3E-17 6.6E-22 189.9 20.4 260 1009-1275 65-393 (720)
125 KOG0641 WD40 repeat protein [G 99.8 3.3E-16 7.1E-21 160.5 25.5 239 994-1273 82-349 (350)
126 KOG0647 mRNA export protein (c 99.8 9.7E-17 2.1E-21 171.7 22.3 235 1026-1305 17-266 (347)
127 KOG4283 Transcription-coupled 99.7 3.6E-16 7.9E-21 166.1 25.6 265 1029-1301 36-346 (397)
128 KOG2055 WD40 repeat protein [G 99.7 1.3E-16 2.7E-21 179.0 23.2 256 1036-1306 213-498 (514)
129 KOG4224 Armadillo repeat prote 99.7 7E-18 1.5E-22 183.8 12.5 309 488-829 126-445 (550)
130 KOG2445 Nuclear pore complex c 99.7 3.6E-16 7.9E-21 167.6 25.1 256 998-1255 10-342 (361)
131 KOG0302 Ribosome Assembly prot 99.7 7.5E-17 1.6E-21 176.8 19.5 217 1009-1271 166-436 (440)
132 KOG0639 Transducin-like enhanc 99.7 2.7E-17 5.8E-22 184.8 16.2 246 1009-1306 432-690 (705)
133 KOG4328 WD40 protein [Function 99.7 1.4E-16 3.1E-21 178.6 21.5 265 1031-1303 181-477 (498)
134 KOG0302 Ribosome Assembly prot 99.7 5.5E-18 1.2E-22 185.6 9.4 268 882-1233 137-437 (440)
135 KOG1273 WD40 repeat protein [G 99.7 1.9E-16 4.1E-21 169.8 20.7 251 1039-1302 26-305 (405)
136 KOG2048 WD40 repeat protein [G 99.7 1.7E-15 3.8E-20 177.1 28.2 251 1009-1301 38-302 (691)
137 KOG0646 WD40 repeat protein [G 99.7 1.5E-16 3.3E-21 179.1 18.3 226 1009-1272 94-349 (476)
138 KOG1446 Histone H3 (Lys4) meth 99.7 1.7E-15 3.8E-20 164.0 25.7 223 1010-1274 70-304 (311)
139 KOG2096 WD40 repeat protein [G 99.7 4E-16 8.7E-21 167.5 19.3 226 1072-1306 80-347 (420)
140 KOG0639 Transducin-like enhanc 99.7 7.2E-17 1.6E-21 181.4 14.0 217 1009-1272 478-703 (705)
141 KOG4378 Nuclear protein COP1 [ 99.7 6.9E-16 1.5E-20 173.5 21.8 269 1018-1301 12-304 (673)
142 KOG2445 Nuclear pore complex c 99.7 5.3E-15 1.1E-19 158.8 26.4 248 1029-1283 6-331 (361)
143 KOG1034 Transcriptional repres 99.7 1.3E-16 2.7E-21 172.4 14.1 241 1009-1273 106-383 (385)
144 KOG4283 Transcription-coupled 99.7 4E-15 8.7E-20 158.3 24.8 265 998-1272 40-364 (397)
145 KOG2106 Uncharacterized conser 99.7 7.3E-15 1.6E-19 166.1 28.3 300 994-1306 97-463 (626)
146 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 1.4E-14 3E-19 166.5 31.8 242 1047-1306 2-264 (300)
147 KOG1036 Mitotic spindle checkp 99.7 1.7E-15 3.8E-20 163.1 22.2 221 1000-1263 53-294 (323)
148 KOG1274 WD40 repeat protein [G 99.7 2.2E-15 4.9E-20 181.3 24.5 226 1031-1306 8-248 (933)
149 KOG1063 RNA polymerase II elon 99.7 5E-15 1.1E-19 173.3 26.3 290 1009-1305 26-376 (764)
150 KOG4328 WD40 protein [Function 99.7 2.5E-15 5.3E-20 168.8 21.9 280 993-1274 178-496 (498)
151 KOG0650 WD40 repeat nucleolar 99.7 2.5E-15 5.4E-20 172.8 21.3 267 994-1270 393-732 (733)
152 KOG1273 WD40 repeat protein [G 99.7 9.7E-15 2.1E-19 156.8 23.3 257 1009-1274 36-323 (405)
153 KOG2048 WD40 repeat protein [G 99.6 2.1E-14 4.5E-19 168.3 25.5 221 1036-1305 25-260 (691)
154 KOG0307 Vesicle coat complex C 99.6 6.6E-16 1.4E-20 190.4 13.7 254 1015-1276 36-330 (1049)
155 KOG1034 Transcriptional repres 99.6 6E-15 1.3E-19 159.6 19.3 254 1009-1306 56-369 (385)
156 PF04564 U-box: U-box domain; 99.6 1.7E-16 3.7E-21 141.8 5.4 72 340-412 1-72 (73)
157 KOG0642 Cell-cycle nuclear pro 99.6 2.3E-15 5E-20 173.1 15.5 235 1009-1282 307-570 (577)
158 KOG4378 Nuclear protein COP1 [ 99.6 1.8E-14 4E-19 162.2 19.6 241 1011-1260 50-309 (673)
159 KOG0644 Uncharacterized conser 99.6 7.2E-16 1.6E-20 182.4 8.7 257 992-1306 181-454 (1113)
160 KOG4224 Armadillo repeat prote 99.6 5.6E-15 1.2E-19 161.4 14.7 271 486-787 164-446 (550)
161 KOG1445 Tumor-specific antigen 99.6 2E-14 4.3E-19 165.4 19.8 117 992-1110 70-202 (1012)
162 KOG0303 Actin-binding protein 99.6 6.5E-14 1.4E-18 154.7 22.2 207 1028-1276 73-297 (472)
163 KOG2055 WD40 repeat protein [G 99.6 5.7E-14 1.2E-18 158.0 20.3 269 1002-1273 214-512 (514)
164 KOG0303 Actin-binding protein 99.6 5.1E-14 1.1E-18 155.5 19.4 239 992-1273 72-337 (472)
165 KOG0649 WD40 repeat protein [G 99.6 5E-13 1.1E-17 139.3 24.5 234 1005-1282 19-282 (325)
166 KOG1538 Uncharacterized conser 99.6 1.2E-13 2.6E-18 159.8 21.0 249 1038-1306 14-279 (1081)
167 KOG0650 WD40 repeat nucleolar 99.6 1.5E-13 3.3E-18 158.3 21.0 264 1029-1305 393-720 (733)
168 KOG0642 Cell-cycle nuclear pro 99.6 2.3E-14 4.9E-19 165.1 13.5 246 1021-1306 282-547 (577)
169 KOG0270 WD40 repeat-containing 99.6 9E-14 2E-18 156.1 17.9 195 997-1239 239-454 (463)
170 KOG1009 Chromatin assembly com 99.5 2.1E-13 4.5E-18 151.7 20.1 272 1009-1306 27-358 (434)
171 KOG2919 Guanine nucleotide-bin 99.5 3.2E-13 6.9E-18 145.9 19.9 248 1009-1264 62-361 (406)
172 KOG0321 WD40 repeat-containing 99.5 2.2E-13 4.8E-18 158.4 19.9 255 1041-1301 54-371 (720)
173 KOG0649 WD40 repeat protein [G 99.5 1.5E-12 3.3E-17 135.7 22.5 236 993-1271 54-314 (325)
174 KOG0290 Conserved WD40 repeat- 99.5 4.4E-13 9.6E-18 143.0 18.3 245 1009-1301 60-346 (364)
175 KOG4227 WD40 repeat protein [G 99.5 7.6E-13 1.6E-17 145.2 20.1 268 995-1306 50-373 (609)
176 COG2319 FOG: WD40 repeat [Gene 99.5 5.2E-11 1.1E-15 140.8 36.8 284 1010-1305 125-427 (466)
177 KOG1517 Guanine nucleotide bin 99.5 1.1E-12 2.5E-17 159.2 20.9 273 1018-1305 1050-1366(1387)
178 KOG1587 Cytoplasmic dynein int 99.5 2E-12 4.3E-17 156.9 22.0 255 1018-1306 222-502 (555)
179 KOG1188 WD40 repeat protein [G 99.5 1.5E-12 3.2E-17 142.2 18.6 262 1009-1273 41-346 (376)
180 KOG1517 Guanine nucleotide bin 99.5 3.8E-12 8.2E-17 154.8 23.7 257 1009-1275 1077-1383(1387)
181 KOG0322 G-protein beta subunit 99.5 6.7E-13 1.5E-17 140.1 15.1 264 1029-1306 7-309 (323)
182 COG2319 FOG: WD40 repeat [Gene 99.5 6.3E-11 1.4E-15 140.1 33.4 256 996-1299 60-337 (466)
183 KOG0322 G-protein beta subunit 99.5 1.8E-12 3.9E-17 136.9 17.0 270 993-1272 6-322 (323)
184 smart00504 Ubox Modified RING 99.4 1E-13 2.2E-18 120.9 5.7 63 343-407 1-63 (63)
185 KOG0307 Vesicle coat complex C 99.4 2.8E-13 6.1E-18 167.5 11.6 221 1009-1237 81-330 (1049)
186 KOG1007 WD repeat protein TSSC 99.4 7.5E-12 1.6E-16 133.5 20.7 249 1016-1274 38-362 (370)
187 KOG1188 WD40 repeat protein [G 99.4 1.1E-12 2.4E-17 143.1 14.8 242 989-1233 58-345 (376)
188 KOG1963 WD40 repeat protein [G 99.4 4.2E-11 9E-16 145.2 29.0 294 1001-1306 164-525 (792)
189 KOG1538 Uncharacterized conser 99.4 4.9E-12 1.1E-16 146.6 18.9 241 1009-1274 26-294 (1081)
190 PRK11028 6-phosphogluconolacto 99.4 3.7E-10 8E-15 132.9 34.4 262 1011-1273 5-304 (330)
191 KOG0290 Conserved WD40 repeat- 99.4 8.1E-12 1.8E-16 133.5 17.9 209 1009-1220 114-355 (364)
192 KOG0771 Prolactin regulatory e 99.4 3.1E-12 6.7E-17 143.8 14.9 198 1040-1274 148-355 (398)
193 KOG1334 WD40 repeat protein [G 99.4 1.8E-12 3.9E-17 146.9 12.9 281 993-1275 134-468 (559)
194 KOG2110 Uncharacterized conser 99.4 5.6E-11 1.2E-15 131.4 23.9 220 1078-1306 5-234 (391)
195 PRK01742 tolB translocation pr 99.4 2.2E-11 4.8E-16 148.2 21.6 229 1017-1301 183-426 (429)
196 KOG2919 Guanine nucleotide-bin 99.4 2.5E-11 5.4E-16 131.5 18.6 247 1038-1303 51-353 (406)
197 KOG1240 Protein kinase contain 99.3 1.2E-10 2.5E-15 144.4 25.9 251 1023-1277 1034-1338(1431)
198 KOG1445 Tumor-specific antigen 99.3 5.8E-12 1.3E-16 145.4 13.1 174 1009-1190 641-848 (1012)
199 PF05804 KAP: Kinesin-associat 99.3 5.2E-11 1.1E-15 148.2 22.2 338 485-861 286-632 (708)
200 KOG0166 Karyopherin (importin) 99.3 1.9E-10 4.1E-15 135.9 24.2 331 493-854 70-412 (514)
201 KOG1524 WD40 repeat-containing 99.3 3.1E-11 6.7E-16 137.7 16.5 197 1047-1269 76-282 (737)
202 PRK11028 6-phosphogluconolacto 99.3 1.1E-09 2.4E-14 128.8 30.2 250 1050-1306 6-289 (330)
203 KOG4497 Uncharacterized conser 99.3 1.3E-10 2.9E-15 125.9 19.0 281 1009-1306 62-418 (447)
204 KOG1009 Chromatin assembly com 99.3 1.3E-10 2.8E-15 129.7 18.7 259 991-1277 55-376 (434)
205 KOG2110 Uncharacterized conser 99.3 1E-09 2.3E-14 121.5 25.4 226 1036-1275 5-250 (391)
206 KOG1523 Actin-related protein 99.3 3.6E-10 7.7E-15 122.9 20.7 229 1036-1265 10-270 (361)
207 KOG0771 Prolactin regulatory e 99.3 5.7E-11 1.2E-15 133.7 15.0 180 1082-1306 148-340 (398)
208 KOG1963 WD40 repeat protein [G 99.3 7.3E-10 1.6E-14 134.6 25.0 250 1043-1305 23-307 (792)
209 KOG0166 Karyopherin (importin) 99.2 1.6E-10 3.5E-15 136.5 18.6 316 485-828 105-434 (514)
210 KOG1007 WD repeat protein TSSC 99.2 9.9E-11 2.1E-15 125.1 13.9 214 1054-1305 38-273 (370)
211 PF05804 KAP: Kinesin-associat 99.2 8.9E-10 1.9E-14 137.4 23.5 353 509-921 269-642 (708)
212 KOG2111 Uncharacterized conser 99.2 2E-09 4.3E-14 117.3 22.8 225 1038-1274 7-257 (346)
213 KOG2321 WD40 repeat protein [G 99.2 8.9E-10 1.9E-14 127.4 19.6 191 1048-1274 147-344 (703)
214 KOG1310 WD40 repeat protein [G 99.2 1.7E-10 3.6E-15 132.2 12.4 165 994-1186 43-231 (758)
215 KOG0644 Uncharacterized conser 99.2 4.5E-11 9.7E-16 142.5 7.7 218 1032-1304 186-409 (1113)
216 KOG3881 Uncharacterized conser 99.1 2.5E-09 5.5E-14 119.3 20.7 251 1009-1301 70-342 (412)
217 KOG3881 Uncharacterized conser 99.1 1.7E-09 3.7E-14 120.6 19.0 204 1009-1256 116-342 (412)
218 KOG1587 Cytoplasmic dynein int 99.1 2.1E-09 4.5E-14 130.9 21.5 228 1009-1274 256-517 (555)
219 KOG1334 WD40 repeat protein [G 99.1 2.2E-10 4.8E-15 130.2 12.2 266 1029-1304 135-450 (559)
220 PRK03629 tolB translocation pr 99.1 1.3E-08 2.9E-13 123.8 27.9 229 1018-1300 179-427 (429)
221 PF02239 Cytochrom_D1: Cytochr 99.1 2.8E-08 6.2E-13 117.8 29.2 283 1011-1305 9-330 (369)
222 PRK01742 tolB translocation pr 99.1 2.4E-09 5.2E-14 130.5 20.6 194 1055-1306 183-387 (429)
223 KOG2111 Uncharacterized conser 99.1 1.5E-08 3.2E-13 110.7 23.3 219 1080-1306 7-242 (346)
224 KOG1524 WD40 repeat-containing 99.1 3.3E-09 7.2E-14 121.5 19.1 174 995-1182 98-282 (737)
225 PF15227 zf-C3HC4_4: zinc fing 99.1 5.4E-11 1.2E-15 93.7 3.1 39 346-384 1-42 (42)
226 KOG1272 WD40-repeat-containing 99.1 2.1E-10 4.6E-15 129.6 8.4 208 1081-1303 132-347 (545)
227 KOG1240 Protein kinase contain 99.1 6E-09 1.3E-13 129.7 20.8 215 1061-1283 1034-1283(1431)
228 KOG1409 Uncharacterized conser 99.1 8.6E-09 1.9E-13 113.2 19.2 235 993-1235 16-271 (404)
229 PRK04922 tolB translocation pr 99.0 2.1E-08 4.5E-13 122.5 24.8 230 1018-1300 184-432 (433)
230 KOG1272 WD40-repeat-containing 99.0 2.6E-10 5.6E-15 128.9 7.1 240 1009-1302 142-391 (545)
231 PRK05137 tolB translocation pr 99.0 3.2E-08 7E-13 121.0 25.4 198 1056-1306 182-392 (435)
232 PRK04922 tolB translocation pr 99.0 2.1E-08 4.6E-13 122.4 23.5 198 1056-1306 184-394 (433)
233 PRK02889 tolB translocation pr 99.0 4.9E-08 1.1E-12 119.0 26.5 231 1018-1301 176-425 (427)
234 PRK05137 tolB translocation pr 99.0 8.8E-08 1.9E-12 117.1 28.7 229 1018-1300 182-432 (435)
235 KOG4227 WD40 repeat protein [G 99.0 3.3E-09 7.1E-14 117.1 14.0 196 1070-1305 48-259 (609)
236 TIGR00599 rad18 DNA repair pro 99.0 3.9E-10 8.4E-15 130.9 6.1 73 339-413 22-94 (397)
237 KOG2139 WD40 repeat protein [G 99.0 1E-08 2.2E-13 113.1 16.5 188 1038-1305 100-295 (445)
238 KOG1523 Actin-related protein 99.0 3.7E-08 7.9E-13 107.6 20.5 203 1009-1218 23-264 (361)
239 KOG2321 WD40 repeat protein [G 99.0 4.3E-08 9.2E-13 113.8 22.1 256 1033-1305 48-328 (703)
240 KOG1310 WD40 repeat protein [G 99.0 2.3E-09 5E-14 123.0 11.8 164 1071-1272 43-230 (758)
241 KOG1354 Serine/threonine prote 98.9 3.9E-08 8.5E-13 107.9 18.3 240 1034-1275 23-361 (433)
242 TIGR03300 assembly_YfgL outer 98.9 6.2E-07 1.3E-11 107.6 30.9 258 1009-1283 66-348 (377)
243 PRK03629 tolB translocation pr 98.9 1.1E-07 2.3E-12 115.9 24.5 199 1056-1306 179-389 (429)
244 KOG0974 WD-repeat protein WDR6 98.9 2.6E-08 5.6E-13 123.2 18.5 180 1009-1235 100-289 (967)
245 PLN03208 E3 ubiquitin-protein 98.9 7.5E-10 1.6E-14 114.7 4.0 59 339-398 14-87 (193)
246 KOG2394 WD40 protein DMR-N9 [G 98.9 4E-08 8.7E-13 113.3 17.4 137 1158-1300 219-384 (636)
247 PRK02889 tolB translocation pr 98.9 1.2E-07 2.6E-12 115.5 22.9 197 1056-1306 176-386 (427)
248 KOG2394 WD40 protein DMR-N9 [G 98.9 2.9E-08 6.3E-13 114.5 15.7 161 1011-1213 188-384 (636)
249 PF08662 eIF2A: Eukaryotic tra 98.9 1.3E-07 2.7E-12 102.3 20.0 114 1159-1282 60-187 (194)
250 KOG2139 WD40 repeat protein [G 98.9 1E-07 2.2E-12 105.4 18.6 164 1011-1218 113-295 (445)
251 KOG1064 RAVE (regulator of V-A 98.8 1.4E-08 3E-13 130.0 11.4 230 1016-1266 2188-2439(2439)
252 KOG4497 Uncharacterized conser 98.8 1.1E-07 2.4E-12 103.7 15.5 267 1007-1305 19-376 (447)
253 KOG0974 WD-repeat protein WDR6 98.8 1.8E-07 3.8E-12 116.1 18.7 181 1047-1274 100-289 (967)
254 KOG0287 Postreplication repair 98.8 3.1E-09 6.8E-14 115.4 2.6 71 340-412 20-90 (442)
255 TIGR02800 propeller_TolB tol-p 98.8 7.8E-07 1.7E-11 108.2 24.0 198 1056-1306 170-380 (417)
256 PRK04792 tolB translocation pr 98.8 1.4E-06 3.1E-11 106.6 26.2 230 1019-1300 199-446 (448)
257 KOG2041 WD40 repeat protein [G 98.8 3.1E-07 6.8E-12 108.4 19.0 263 1033-1305 11-323 (1189)
258 PF02239 Cytochrom_D1: Cytochr 98.7 3.9E-06 8.5E-11 99.7 28.2 267 1009-1283 49-357 (369)
259 KOG4547 WD40 repeat-containing 98.7 7.3E-07 1.6E-11 105.0 21.0 180 1009-1235 6-221 (541)
260 PF13923 zf-C3HC4_2: Zinc fing 98.7 7.7E-09 1.7E-13 80.6 3.2 38 346-384 1-39 (39)
261 TIGR02658 TTQ_MADH_Hv methylam 98.7 3.5E-05 7.6E-10 89.9 34.4 253 1018-1282 27-339 (352)
262 TIGR02800 propeller_TolB tol-p 98.7 1.7E-06 3.7E-11 105.2 25.0 217 1017-1282 169-405 (417)
263 PRK00178 tolB translocation pr 98.7 3.6E-06 7.9E-11 102.9 27.7 230 1019-1301 180-428 (430)
264 PRK00178 tolB translocation pr 98.7 2.7E-06 5.9E-11 104.0 24.7 197 1057-1306 180-389 (430)
265 PF08662 eIF2A: Eukaryotic tra 98.7 7.5E-07 1.6E-11 96.3 17.4 98 1031-1143 54-158 (194)
266 PF10282 Lactonase: Lactonase, 98.7 8.8E-05 1.9E-09 87.9 36.5 284 1011-1298 2-345 (345)
267 KOG2041 WD40 repeat protein [G 98.6 2.5E-06 5.4E-11 101.0 21.8 255 1009-1272 27-336 (1189)
268 COG5432 RAD18 RING-finger-cont 98.6 1.5E-08 3.3E-13 107.8 3.2 70 340-411 22-91 (391)
269 KOG0280 Uncharacterized conser 98.6 9.2E-07 2E-11 95.8 16.5 222 1010-1275 87-335 (339)
270 PRK04792 tolB translocation pr 98.6 4.4E-06 9.5E-11 102.4 24.3 197 1057-1306 199-408 (448)
271 KOG4547 WD40 repeat-containing 98.6 8.9E-07 1.9E-11 104.3 16.7 185 1088-1301 3-195 (541)
272 COG5064 SRP1 Karyopherin (impo 98.6 1.6E-06 3.5E-11 95.3 17.0 260 487-767 155-426 (526)
273 TIGR03300 assembly_YfgL outer 98.6 2.5E-05 5.5E-10 93.7 29.4 250 1009-1270 106-376 (377)
274 COG5064 SRP1 Karyopherin (impo 98.6 9.9E-07 2.1E-11 97.0 14.9 301 487-814 112-428 (526)
275 PF14835 zf-RING_6: zf-RING of 98.6 1.6E-08 3.4E-13 84.7 0.7 59 342-404 6-65 (65)
276 KOG0280 Uncharacterized conser 98.5 3.8E-06 8.2E-11 91.2 18.4 215 1018-1275 46-286 (339)
277 PF00097 zf-C3HC4: Zinc finger 98.5 6.6E-08 1.4E-12 76.4 3.5 39 346-384 1-41 (41)
278 PF13445 zf-RING_UBOX: RING-ty 98.5 5.4E-08 1.2E-12 76.7 2.6 36 346-382 1-43 (43)
279 KOG4190 Uncharacterized conser 98.5 4E-07 8.7E-12 104.4 10.0 236 994-1271 728-986 (1034)
280 PF10282 Lactonase: Lactonase, 98.5 0.00016 3.4E-09 85.8 32.5 250 1049-1306 2-307 (345)
281 PF13360 PQQ_2: PQQ-like domai 98.5 4.5E-05 9.8E-10 85.0 26.4 217 1054-1279 1-236 (238)
282 KOG2315 Predicted translation 98.5 2.6E-05 5.5E-10 91.6 24.2 278 1009-1306 46-370 (566)
283 KOG0823 Predicted E3 ubiquitin 98.5 7E-08 1.5E-12 101.8 3.0 58 340-398 44-103 (230)
284 KOG0320 Predicted E3 ubiquitin 98.5 1E-07 2.2E-12 95.9 3.8 53 341-394 129-183 (187)
285 PRK01029 tolB translocation pr 98.5 6E-05 1.3E-09 91.8 28.1 235 1018-1302 165-426 (428)
286 PRK11138 outer membrane biogen 98.5 8.1E-05 1.8E-09 90.0 29.2 256 1009-1283 70-363 (394)
287 PLN02919 haloacid dehalogenase 98.4 8.8E-05 1.9E-09 99.3 32.0 241 1009-1277 581-892 (1057)
288 COG5170 CDC55 Serine/threonine 98.4 4.2E-06 9.2E-11 90.9 15.6 235 1036-1272 26-366 (460)
289 PHA02929 N1R/p28-like protein; 98.4 1.9E-07 4.2E-12 101.6 4.4 48 341-389 172-227 (238)
290 KOG1064 RAVE (regulator of V-A 98.4 9.7E-07 2.1E-11 113.8 11.1 212 1052-1283 2186-2408(2439)
291 COG2706 3-carboxymuconate cycl 98.4 0.00078 1.7E-08 76.1 32.4 279 1017-1299 15-345 (346)
292 KOG4190 Uncharacterized conser 98.4 5.9E-07 1.3E-11 103.1 8.0 175 1070-1282 727-915 (1034)
293 TIGR02658 TTQ_MADH_Hv methylam 98.4 0.00018 3.9E-09 84.0 28.5 232 1056-1305 27-314 (352)
294 KOG1354 Serine/threonine prote 98.4 1.4E-05 3.1E-10 88.3 17.9 225 1009-1236 38-361 (433)
295 PF13920 zf-C3HC4_3: Zinc fing 98.4 2.8E-07 6E-12 76.2 3.7 47 342-389 1-48 (50)
296 KOG0317 Predicted E3 ubiquitin 98.4 2.3E-07 5E-12 100.6 3.7 55 339-394 235-289 (293)
297 KOG3914 WD repeat protein WDR4 98.3 6.7E-06 1.5E-10 93.1 13.9 164 1080-1283 64-233 (390)
298 KOG2695 WD40 repeat protein [G 98.3 1.2E-06 2.5E-11 96.8 7.3 171 1043-1255 218-402 (425)
299 PF13639 zf-RING_2: Ring finge 98.3 3.1E-07 6.8E-12 73.7 2.1 40 345-385 2-44 (44)
300 KOG0311 Predicted E3 ubiquitin 98.3 1.7E-07 3.6E-12 103.8 -0.1 70 338-407 38-108 (381)
301 COG4946 Uncharacterized protei 98.2 0.00063 1.4E-08 78.3 27.3 206 1086-1305 274-503 (668)
302 KOG0882 Cyclophilin-related pe 98.2 1.5E-05 3.3E-10 90.8 14.1 248 1033-1282 6-314 (558)
303 cd00162 RING RING-finger (Real 98.2 1.1E-06 2.5E-11 70.4 3.9 43 345-387 1-44 (45)
304 KOG1048 Neural adherens juncti 98.2 1.6E-05 3.4E-10 97.8 15.3 268 488-772 274-620 (717)
305 PRK01029 tolB translocation pr 98.2 0.0001 2.2E-09 89.8 22.0 204 1056-1306 165-386 (428)
306 KOG2177 Predicted E3 ubiquitin 98.2 9.5E-07 2.1E-11 103.3 4.0 70 339-412 9-78 (386)
307 PF11789 zf-Nse: Zinc-finger o 98.2 6.6E-07 1.4E-11 75.4 1.8 43 342-384 10-54 (57)
308 KOG1832 HIV-1 Vpr-binding prot 98.2 1.5E-06 3.2E-11 105.0 4.9 211 1031-1304 1096-1315(1516)
309 KOG2066 Vacuolar assembly/sort 98.2 6.3E-05 1.4E-09 91.7 18.5 181 1036-1234 39-233 (846)
310 PRK11138 outer membrane biogen 98.2 0.00096 2.1E-08 80.7 29.1 254 1009-1272 121-393 (394)
311 PF00400 WD40: WD domain, G-be 98.1 5.4E-06 1.2E-10 64.4 6.3 38 1069-1106 2-39 (39)
312 KOG3914 WD repeat protein WDR4 98.1 1.6E-05 3.6E-10 90.0 12.0 147 1009-1195 75-232 (390)
313 KOG1912 WD40 repeat protein [G 98.1 8.9E-05 1.9E-09 89.4 18.4 98 1009-1108 80-186 (1062)
314 PHA02926 zinc finger-like prot 98.1 1.7E-06 3.7E-11 90.5 3.6 50 340-389 167-230 (242)
315 smart00184 RING Ring finger. E 98.1 2.7E-06 5.8E-11 65.7 3.8 39 346-384 1-39 (39)
316 KOG0309 Conserved WD40 repeat- 98.1 1.5E-05 3.2E-10 95.3 11.2 232 1038-1274 69-340 (1081)
317 KOG1409 Uncharacterized conser 98.1 8E-05 1.7E-09 82.7 15.7 235 1031-1274 19-271 (404)
318 KOG4532 WD40-like repeat conta 98.1 0.00019 4E-09 77.3 17.8 223 1009-1274 85-332 (344)
319 COG2706 3-carboxymuconate cycl 98.1 0.0012 2.7E-08 74.6 24.7 215 1055-1305 15-258 (346)
320 KOG4714 Nucleoporin [Nuclear s 98.0 1.3E-05 2.8E-10 85.7 8.5 143 1019-1184 160-316 (319)
321 TIGR00570 cdk7 CDK-activating 98.0 5.1E-06 1.1E-10 93.0 5.8 65 342-406 2-74 (309)
322 PF14634 zf-RING_5: zinc-RING 98.0 3.8E-06 8.3E-11 67.3 3.4 41 345-386 1-44 (44)
323 KOG1645 RING-finger-containing 98.0 0.00011 2.5E-09 83.0 15.9 235 1031-1273 188-461 (463)
324 KOG4532 WD40-like repeat conta 98.0 0.00069 1.5E-08 73.1 20.9 215 1047-1303 85-315 (344)
325 KOG1048 Neural adherens juncti 98.0 0.00016 3.5E-09 89.1 18.5 302 493-814 237-620 (717)
326 COG5354 Uncharacterized protei 98.0 0.0012 2.7E-08 77.0 24.3 274 1009-1305 45-374 (561)
327 KOG4199 Uncharacterized conser 98.0 0.00037 8E-09 77.4 19.0 279 532-831 102-404 (461)
328 KOG2315 Predicted translation 98.0 0.00084 1.8E-08 79.2 22.8 273 1018-1306 11-327 (566)
329 PLN02919 haloacid dehalogenase 98.0 0.002 4.3E-08 86.6 29.7 240 1040-1306 571-874 (1057)
330 KOG4649 PQQ (pyrrolo-quinoline 97.9 0.0043 9.2E-08 67.0 25.0 106 1009-1119 24-132 (354)
331 KOG2695 WD40 repeat protein [G 97.9 1.8E-05 3.8E-10 87.7 7.5 138 1159-1300 253-402 (425)
332 KOG0882 Cyclophilin-related pe 97.9 6.7E-05 1.4E-09 85.7 11.5 231 1009-1243 21-314 (558)
333 PF13360 PQQ_2: PQQ-like domai 97.9 0.003 6.5E-08 70.3 25.1 212 1017-1241 2-237 (238)
334 PF04826 Arm_2: Armadillo-like 97.9 0.00018 4E-09 80.4 14.6 187 529-735 7-203 (254)
335 PRK04043 tolB translocation pr 97.9 0.0024 5.2E-08 77.5 25.3 198 1056-1306 169-383 (419)
336 KOG0309 Conserved WD40 repeat- 97.9 4.4E-05 9.5E-10 91.4 9.8 191 996-1187 109-340 (1081)
337 KOG2314 Translation initiation 97.9 0.0011 2.3E-08 78.0 20.3 273 1009-1306 223-553 (698)
338 KOG4714 Nucleoporin [Nuclear s 97.9 0.00021 4.7E-09 76.7 13.6 224 1039-1271 39-316 (319)
339 COG5354 Uncharacterized protei 97.8 0.0042 9.1E-08 72.7 24.3 244 1017-1274 107-396 (561)
340 PF08450 SGL: SMP-30/Gluconola 97.8 0.029 6.3E-07 63.1 31.3 217 1041-1305 4-240 (246)
341 PF00780 CNH: CNH domain; Int 97.8 0.013 2.8E-07 67.1 28.8 227 1045-1283 6-265 (275)
342 cd00020 ARM Armadillo/beta-cat 97.8 0.00017 3.6E-09 70.8 11.4 116 607-736 2-119 (120)
343 KOG1912 WD40 repeat protein [G 97.8 0.0013 2.8E-08 79.8 20.2 233 1036-1274 15-305 (1062)
344 KOG4199 Uncharacterized conser 97.8 0.0025 5.5E-08 71.0 20.7 303 497-831 115-445 (461)
345 PF04762 IKI3: IKI3 family; I 97.8 0.0053 1.2E-07 81.1 27.8 249 1035-1302 74-360 (928)
346 PF04826 Arm_2: Armadillo-like 97.8 0.00029 6.3E-09 78.9 13.9 178 490-692 14-202 (254)
347 PRK09687 putative lyase; Provi 97.8 0.0015 3.2E-08 74.7 19.9 253 485-826 19-278 (280)
348 KOG2066 Vacuolar assembly/sort 97.8 0.00048 1E-08 84.3 16.2 170 1009-1187 50-234 (846)
349 KOG2164 Predicted E3 ubiquitin 97.8 1.5E-05 3.3E-10 93.2 3.5 52 342-393 185-240 (513)
350 KOG2660 Locus-specific chromos 97.8 1.2E-05 2.7E-10 89.1 2.6 68 339-407 11-82 (331)
351 cd00020 ARM Armadillo/beta-cat 97.8 9.2E-05 2E-09 72.7 8.6 113 485-602 3-119 (120)
352 KOG4642 Chaperone-dependent E3 97.7 2.3E-05 5E-10 83.3 4.2 78 336-414 204-281 (284)
353 COG5574 PEX10 RING-finger-cont 97.7 1.5E-05 3.2E-10 85.8 2.5 52 341-392 213-265 (271)
354 PF15492 Nbas_N: Neuroblastoma 97.7 0.0064 1.4E-07 67.1 22.5 218 1048-1283 10-269 (282)
355 PF08450 SGL: SMP-30/Gluconola 97.7 0.052 1.1E-06 61.0 30.7 201 1009-1254 13-233 (246)
356 cd00216 PQQ_DH Dehydrogenases 97.7 0.019 4.2E-07 71.3 29.5 264 1009-1283 62-434 (488)
357 KOG3617 WD40 and TPR repeat-co 97.7 0.0013 2.9E-08 80.0 17.8 281 1009-1303 28-368 (1416)
358 COG5222 Uncharacterized conser 97.7 5.4E-05 1.2E-09 81.5 5.7 69 344-413 275-345 (427)
359 PF10508 Proteasom_PSMB: Prote 97.7 0.0028 6E-08 78.8 21.6 303 498-828 47-364 (503)
360 KOG0978 E3 ubiquitin ligase in 97.7 1.5E-05 3.3E-10 97.9 1.5 55 340-394 640-694 (698)
361 KOG1275 PAB-dependent poly(A) 97.6 0.00061 1.3E-08 84.1 14.7 178 1009-1232 148-340 (1118)
362 KOG4159 Predicted E3 ubiquitin 97.6 3.5E-05 7.6E-10 90.3 4.0 74 336-410 77-154 (398)
363 PRK09687 putative lyase; Provi 97.6 0.0015 3.3E-08 74.6 16.6 220 535-830 24-250 (280)
364 PF10508 Proteasom_PSMB: Prote 97.6 0.019 4.2E-07 71.4 27.0 311 487-831 75-421 (503)
365 PRK04043 tolB translocation pr 97.6 0.02 4.3E-07 69.6 26.3 217 1018-1282 169-408 (419)
366 KOG3621 WD40 repeat-containing 97.5 0.0083 1.8E-07 73.0 21.9 261 1009-1274 46-354 (726)
367 KOG0297 TNF receptor-associate 97.5 7E-05 1.5E-09 89.2 4.1 70 339-409 17-87 (391)
368 COG5170 CDC55 Serine/threonine 97.5 0.0005 1.1E-08 75.2 10.0 102 1202-1306 170-296 (460)
369 PRK13800 putative oxidoreducta 97.5 0.0095 2.1E-07 79.4 24.4 257 487-826 619-895 (897)
370 PF12678 zf-rbx1: RING-H2 zinc 97.5 8.8E-05 1.9E-09 66.4 3.6 39 346-385 22-73 (73)
371 KOG2314 Translation initiation 97.5 0.012 2.5E-07 69.6 21.2 241 1039-1306 213-508 (698)
372 PF11768 DUF3312: Protein of u 97.4 0.042 9.2E-07 66.3 25.8 68 1205-1274 261-330 (545)
373 KOG2160 Armadillo/beta-catenin 97.4 0.0035 7.5E-08 71.6 15.8 187 499-738 93-283 (342)
374 COG4946 Uncharacterized protei 97.4 0.012 2.7E-07 68.0 20.1 149 1009-1193 333-484 (668)
375 PF04762 IKI3: IKI3 family; I 97.4 0.025 5.4E-07 75.0 26.2 217 1077-1306 74-320 (928)
376 KOG2122 Beta-catenin-binding p 97.4 0.00074 1.6E-08 86.6 11.2 226 503-739 365-603 (2195)
377 PF08596 Lgl_C: Lethal giant l 97.4 0.029 6.4E-07 67.2 23.8 195 1074-1305 82-321 (395)
378 PRK13800 putative oxidoreducta 97.3 0.014 2.9E-07 78.0 23.2 226 535-828 622-865 (897)
379 KOG2114 Vacuolar assembly/sort 97.3 0.021 4.6E-07 70.9 22.5 192 1003-1195 27-252 (933)
380 KOG0824 Predicted E3 ubiquitin 97.3 9.8E-05 2.1E-09 80.7 2.5 51 344-394 8-58 (324)
381 PF00400 WD40: WD domain, G-be 97.3 0.00048 1E-08 53.3 5.7 34 1029-1062 4-39 (39)
382 KOG2114 Vacuolar assembly/sort 97.3 0.023 4.9E-07 70.6 22.4 194 1038-1243 27-252 (933)
383 PF06433 Me-amine-dh_H: Methyl 97.3 0.1 2.2E-06 60.1 26.2 223 1056-1283 17-330 (342)
384 PF07433 DUF1513: Protein of u 97.3 0.084 1.8E-06 60.1 25.3 207 1048-1282 19-256 (305)
385 KOG2122 Beta-catenin-binding p 97.2 0.002 4.4E-08 82.8 12.7 229 508-759 317-576 (2195)
386 COG5152 Uncharacterized conser 97.2 0.00018 3.9E-09 73.4 2.2 50 343-393 196-245 (259)
387 KOG1813 Predicted E3 ubiquitin 97.2 0.0002 4.3E-09 78.2 2.3 48 344-392 242-289 (313)
388 PF07433 DUF1513: Protein of u 97.1 0.12 2.5E-06 59.0 24.1 243 999-1263 7-276 (305)
389 PF11768 DUF3312: Protein of u 97.1 0.01 2.2E-07 71.5 16.1 75 1033-1111 256-332 (545)
390 KOG1832 HIV-1 Vpr-binding prot 97.0 0.00032 6.9E-09 85.6 2.8 180 1069-1305 1092-1281(1516)
391 KOG1920 IkappaB kinase complex 97.0 0.063 1.4E-06 69.3 22.5 229 1036-1276 68-325 (1265)
392 KOG1645 RING-finger-containing 97.0 0.013 2.9E-07 66.9 14.8 214 1009-1235 207-462 (463)
393 KOG1008 Uncharacterized conser 96.9 0.00054 1.2E-08 81.7 3.4 225 1009-1273 71-335 (783)
394 KOG0826 Predicted E3 ubiquitin 96.9 0.0012 2.6E-08 73.2 5.1 49 341-390 298-347 (357)
395 KOG1008 Uncharacterized conser 96.8 0.00028 6.2E-09 84.0 0.2 194 1037-1273 57-275 (783)
396 PF03178 CPSF_A: CPSF A subuni 96.8 0.38 8.3E-06 56.4 25.8 205 1056-1270 2-262 (321)
397 KOG1275 PAB-dependent poly(A) 96.8 0.0066 1.4E-07 75.4 10.9 97 1009-1108 188-296 (1118)
398 KOG2160 Armadillo/beta-catenin 96.8 0.028 6E-07 64.4 15.1 181 638-832 100-284 (342)
399 cd00216 PQQ_DH Dehydrogenases 96.7 0.37 8E-06 60.1 26.3 234 1009-1248 111-438 (488)
400 cd00256 VATPase_H VATPase_H, r 96.7 0.14 3E-06 61.5 21.3 279 497-828 109-423 (429)
401 PF12861 zf-Apc11: Anaphase-pr 96.7 0.0015 3.2E-08 59.1 3.5 46 344-389 33-82 (85)
402 KOG2879 Predicted E3 ubiquitin 96.7 0.0012 2.7E-08 71.4 3.3 49 341-389 237-287 (298)
403 smart00320 WD40 WD40 repeats. 96.6 0.0046 1E-07 45.7 5.5 38 1069-1106 3-40 (40)
404 PF00780 CNH: CNH domain; Int 96.6 0.86 1.9E-05 52.0 26.7 224 1009-1245 8-266 (275)
405 KOG0802 E3 ubiquitin ligase [P 96.6 0.0009 2E-08 83.8 2.3 48 341-389 289-341 (543)
406 KOG1222 Kinesin associated pro 96.6 0.08 1.7E-06 61.8 17.2 168 489-677 304-476 (791)
407 PF15492 Nbas_N: Neuroblastoma 96.6 0.64 1.4E-05 51.8 23.4 191 1036-1243 43-268 (282)
408 KOG1002 Nucleotide excision re 96.5 0.0011 2.3E-08 77.0 1.7 51 341-391 534-588 (791)
409 PF00930 DPPIV_N: Dipeptidyl p 96.5 0.7 1.5E-05 55.0 25.4 264 1018-1306 23-343 (353)
410 KOG1222 Kinesin associated pro 96.3 0.029 6.3E-07 65.3 11.7 177 548-742 276-459 (791)
411 PRK02888 nitrous-oxide reducta 96.3 0.19 4.1E-06 62.4 19.0 137 1130-1274 236-405 (635)
412 PF04053 Coatomer_WDAD: Coatom 96.2 0.28 6.2E-06 59.7 20.4 173 1076-1269 30-219 (443)
413 PF03224 V-ATPase_H_N: V-ATPas 96.2 0.046 1E-06 63.9 13.3 128 491-625 108-252 (312)
414 KOG0168 Putative ubiquitin fus 96.2 0.052 1.1E-06 67.5 13.4 199 536-756 169-381 (1051)
415 KOG4367 Predicted Zn-finger pr 96.2 0.0021 4.6E-08 72.8 1.5 35 341-375 2-36 (699)
416 KOG4640 Anaphase-promoting com 96.1 0.021 4.6E-07 68.8 9.9 88 1037-1129 21-113 (665)
417 PF08553 VID27: VID27 cytoplas 96.1 0.092 2E-06 67.2 15.9 120 1175-1306 501-634 (794)
418 PF04841 Vps16_N: Vps16, N-ter 96.0 1.8 3.8E-05 52.7 25.9 186 1057-1256 62-270 (410)
419 COG5243 HRD1 HRD ubiquitin lig 96.0 0.005 1.1E-07 69.0 3.3 47 342-389 286-345 (491)
420 KOG3621 WD40 repeat-containing 96.0 0.061 1.3E-06 65.8 12.6 204 1038-1282 37-254 (726)
421 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.9 4.1 9E-05 51.2 29.0 57 1227-1283 442-500 (527)
422 KOG1920 IkappaB kinase complex 95.9 0.74 1.6E-05 60.0 22.0 225 1009-1271 81-363 (1265)
423 TIGR02270 conserved hypothetic 95.7 0.55 1.2E-05 56.6 19.5 147 533-735 53-205 (410)
424 KOG4649 PQQ (pyrrolo-quinoline 95.7 1.3 2.8E-05 48.5 19.9 107 1047-1194 24-131 (354)
425 PHA02713 hypothetical protein; 95.6 0.69 1.5E-05 58.5 20.7 98 1178-1279 432-539 (557)
426 KOG4628 Predicted E3 ubiquitin 95.6 0.0077 1.7E-07 69.1 2.9 47 344-390 230-279 (348)
427 PF14783 BBS2_Mid: Ciliary BBS 95.6 0.62 1.3E-05 45.0 15.2 88 1170-1269 17-110 (111)
428 KOG4500 Rho/Rac GTPase guanine 95.5 0.2 4.2E-06 58.2 13.8 299 508-832 61-392 (604)
429 PF05096 Glu_cyclase_2: Glutam 95.5 4.8 0.0001 45.2 24.3 188 1069-1261 34-249 (264)
430 PF00930 DPPIV_N: Dipeptidyl p 95.5 1.3 2.8E-05 52.8 21.7 236 1055-1305 22-295 (353)
431 KOG4441 Proteins containing BT 95.4 0.92 2E-05 57.4 20.9 226 1009-1277 286-550 (571)
432 PF04841 Vps16_N: Vps16, N-ter 95.4 3.9 8.5E-05 49.7 25.3 191 1101-1303 62-272 (410)
433 KOG2042 Ubiquitin fusion degra 95.3 0.021 4.6E-07 72.9 5.7 72 338-411 865-937 (943)
434 KOG4646 Uncharacterized conser 95.3 0.017 3.7E-07 56.6 3.7 123 493-623 21-148 (173)
435 PF04053 Coatomer_WDAD: Coatom 95.2 0.63 1.4E-05 56.7 17.9 166 1008-1186 79-262 (443)
436 COG5540 RING-finger-containing 95.2 0.013 2.8E-07 64.3 3.0 47 344-390 324-373 (374)
437 PF08596 Lgl_C: Lethal giant l 95.2 2.1 4.5E-05 51.6 21.7 189 1034-1244 84-300 (395)
438 PF05536 Neurochondrin: Neuroc 95.1 0.29 6.4E-06 61.2 14.8 146 495-652 11-170 (543)
439 PF05536 Neurochondrin: Neuroc 95.0 0.27 5.8E-06 61.6 14.3 186 534-738 5-214 (543)
440 PF08553 VID27: VID27 cytoplas 95.0 0.36 7.8E-06 62.0 15.4 142 1049-1233 497-646 (794)
441 PF04641 Rtf2: Rtf2 RING-finge 95.0 0.02 4.4E-07 64.8 4.0 66 340-407 110-182 (260)
442 PF03224 V-ATPase_H_N: V-ATPas 94.9 0.12 2.7E-06 60.3 10.4 195 534-740 55-272 (312)
443 KOG4172 Predicted E3 ubiquitin 94.9 0.0071 1.5E-07 48.9 -0.1 45 344-388 8-53 (62)
444 PF00514 Arm: Armadillo/beta-c 94.7 0.021 4.6E-07 44.9 2.3 38 525-563 3-40 (41)
445 PF01602 Adaptin_N: Adaptin N 94.6 1.1 2.5E-05 56.2 18.9 109 497-623 87-199 (526)
446 KOG3039 Uncharacterized conser 94.6 0.024 5.2E-07 60.5 3.0 53 341-394 219-275 (303)
447 PF06433 Me-amine-dh_H: Methyl 94.6 4.7 0.0001 46.8 21.4 218 1013-1244 62-330 (342)
448 PF01602 Adaptin_N: Adaptin N 94.6 2.3 5.1E-05 53.4 21.4 212 486-738 111-334 (526)
449 PF06977 SdiA-regulated: SdiA- 94.5 11 0.00023 42.5 26.5 203 1034-1270 19-247 (248)
450 PF14783 BBS2_Mid: Ciliary BBS 94.4 0.91 2E-05 43.9 12.7 89 1009-1103 16-109 (111)
451 KOG2444 WD40 repeat protein [G 94.3 0.099 2.1E-06 56.3 6.7 99 1009-1109 71-178 (238)
452 COG0823 TolB Periplasmic compo 94.2 1.3 2.7E-05 54.0 16.8 179 1077-1305 191-384 (425)
453 PF03178 CPSF_A: CPSF A subuni 94.2 2.7 5.8E-05 49.3 19.4 170 1009-1183 43-262 (321)
454 KOG0168 Putative ubiquitin fus 94.0 2.3 4.9E-05 53.7 18.2 211 490-718 169-390 (1051)
455 KOG0946 ER-Golgi vesicle-tethe 94.0 0.79 1.7E-05 57.2 14.2 208 490-718 24-264 (970)
456 KOG4640 Anaphase-promoting com 94.0 0.2 4.3E-06 60.8 9.1 90 1205-1300 22-115 (665)
457 COG3391 Uncharacterized conser 93.9 16 0.00034 44.0 25.7 218 1040-1301 77-309 (381)
458 COG1413 FOG: HEAT repeat [Ener 93.7 8 0.00017 45.5 22.4 101 491-625 45-150 (335)
459 KOG4692 Predicted E3 ubiquitin 93.7 0.04 8.7E-07 61.5 2.5 47 342-389 421-467 (489)
460 KOG2395 Protein involved in va 93.6 0.85 1.8E-05 54.5 13.2 142 1048-1233 348-499 (644)
461 COG3391 Uncharacterized conser 93.6 11 0.00024 45.3 23.6 210 1009-1256 87-309 (381)
462 PF00514 Arm: Armadillo/beta-c 93.6 0.08 1.7E-06 41.6 3.5 39 698-736 2-40 (41)
463 KOG1734 Predicted RING-contain 93.6 0.017 3.6E-07 62.4 -0.5 53 342-394 223-286 (328)
464 PF02897 Peptidase_S9_N: Proly 93.6 22 0.00048 43.1 29.7 217 1040-1303 127-383 (414)
465 COG0823 TolB Periplasmic compo 93.6 3.5 7.7E-05 50.1 19.1 176 1036-1256 192-380 (425)
466 KOG1897 Damage-specific DNA bi 93.5 32 0.00069 44.8 32.3 266 1001-1275 306-617 (1096)
467 KOG2079 Vacuolar assembly/sort 93.5 2.5 5.3E-05 54.8 17.8 75 1036-1111 89-163 (1206)
468 KOG0804 Cytoplasmic Zn-finger 93.5 0.025 5.4E-07 65.6 0.6 45 342-389 174-222 (493)
469 KOG2734 Uncharacterized conser 93.5 0.66 1.4E-05 54.3 11.7 89 607-707 120-223 (536)
470 KOG0946 ER-Golgi vesicle-tethe 93.4 6.6 0.00014 49.5 20.6 294 488-786 121-453 (970)
471 smart00320 WD40 WD40 repeats. 93.2 0.21 4.6E-06 36.2 5.3 35 1237-1271 3-40 (40)
472 KOG3800 Predicted E3 ubiquitin 93.2 0.057 1.2E-06 59.6 2.7 49 345-393 2-55 (300)
473 KOG2171 Karyopherin (importin) 93.1 5.2 0.00011 52.5 20.2 312 492-831 162-505 (1075)
474 KOG1039 Predicted E3 ubiquitin 93.1 0.053 1.2E-06 62.8 2.5 49 341-389 159-221 (344)
475 TIGR03074 PQQ_membr_DH membran 93.0 17 0.00037 47.6 25.0 221 1024-1282 160-486 (764)
476 KOG2079 Vacuolar assembly/sort 93.0 0.22 4.8E-06 63.7 7.8 95 1009-1107 100-202 (1206)
477 KOG0828 Predicted E3 ubiquitin 92.9 0.065 1.4E-06 62.5 2.8 53 338-390 566-635 (636)
478 PTZ00429 beta-adaptin; Provisi 92.9 6.3 0.00014 51.3 20.8 113 492-625 71-192 (746)
479 KOG3039 Uncharacterized conser 92.8 0.076 1.6E-06 56.8 2.9 37 339-375 39-75 (303)
480 PF05096 Glu_cyclase_2: Glutam 92.7 4.6 0.0001 45.4 16.7 119 1159-1283 45-167 (264)
481 KOG2395 Protein involved in va 92.6 0.51 1.1E-05 56.3 9.4 122 1171-1306 349-487 (644)
482 PHA03098 kelch-like protein; P 92.5 4.2 9.1E-05 51.3 18.6 96 1178-1277 406-515 (534)
483 KOG2171 Karyopherin (importin) 92.4 3.8 8.1E-05 53.8 17.4 300 488-830 117-461 (1075)
484 KOG3617 WD40 and TPR repeat-co 92.3 3.3 7.2E-05 52.0 15.9 56 1009-1064 72-131 (1416)
485 KOG2444 WD40 repeat protein [G 92.1 0.14 3.1E-06 55.1 3.9 99 1093-1192 33-138 (238)
486 PRK02888 nitrous-oxide reducta 91.9 4.7 0.0001 50.5 16.9 173 1052-1235 211-405 (635)
487 PHA02713 hypothetical protein; 91.8 3.2 7E-05 52.6 16.2 90 1009-1100 305-409 (557)
488 PF12234 Rav1p_C: RAVE protein 91.8 3.3 7.1E-05 52.2 15.7 116 1079-1234 30-156 (631)
489 PF02897 Peptidase_S9_N: Proly 91.8 38 0.00081 41.1 27.1 217 1018-1277 150-408 (414)
490 cd00256 VATPase_H VATPase_H, r 91.7 4.1 8.9E-05 49.2 16.0 229 493-735 147-423 (429)
491 KOG2817 Predicted E3 ubiquitin 91.6 0.18 4E-06 58.2 4.3 64 127-190 119-187 (394)
492 KOG4500 Rho/Rac GTPase guanine 91.6 8.7 0.00019 45.2 17.5 302 487-820 85-422 (604)
493 KOG4499 Ca2+-binding protein R 91.6 22 0.00047 38.9 19.2 46 1209-1256 217-264 (310)
494 PF10433 MMS1_N: Mono-function 91.5 46 0.001 41.7 26.4 248 1047-1300 223-503 (504)
495 COG5175 MOT2 Transcriptional r 91.4 0.12 2.6E-06 57.5 2.5 51 342-393 14-68 (480)
496 COG3386 Gluconolactonase [Carb 91.3 20 0.00044 41.7 20.7 209 1048-1299 39-263 (307)
497 PF14570 zf-RING_4: RING/Ubox 91.3 0.14 3E-06 41.5 2.0 43 346-388 1-47 (48)
498 KOG1001 Helicase-like transcri 91.2 0.052 1.1E-06 68.9 -0.6 49 344-393 455-504 (674)
499 COG3490 Uncharacterized protei 91.2 15 0.00031 41.4 17.9 211 1042-1280 73-317 (366)
500 KOG0825 PHD Zn-finger protein 91.1 0.054 1.2E-06 66.2 -0.6 48 342-390 122-172 (1134)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.8e-38 Score=344.15 Aligned_cols=301 Identities=17% Similarity=0.252 Sum_probs=259.9
Q ss_pred hccccccccccccccccc-----cEEEEEeCCCcEEEEeCCC--ceEEcccCCCCEEEEEEeCC--EEEEEECCCcEEEE
Q 000744 991 YGTLRKLKKYSAVVTDIQ-----KALMNLSSVNATELWHCNE--VTELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMW 1061 (1306)
Q Consensus 991 ~~~l~~l~ghs~~V~~i~-----~~Lasgs~Dg~I~IWd~~~--~~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vW 1061 (1306)
..+-..+.||.+.|-++. ..|+||+.|.++|+||+.+ ...+..+|...|.|++|+|| .|+||+.||+|++|
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLW 184 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEe
Confidence 355678899999998877 7999999999999999875 55666899999999999997 99999999999999
Q ss_pred eCCCCccceEEEEcccCccEEEEEEcC-----CCCEEEEEeCCCcEEEEEcCCCceeEEEee-cCCCCeEEEEe-CCcEE
Q 000744 1062 DSGKRVLRLIQEVREHTRAVTCLYVPS-----SGDKLYSGSLDKTIRVWSIKPEEIHCLQVH-NVKEAVHELTA-NAEIA 1134 (1306)
Q Consensus 1062 d~~t~~~~~i~~l~~H~~~V~sl~fsp-----dg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~-~~~~~V~sl~~-~~~~v 1134 (1306)
|.++|. +....+.+|+..|++++|.| ..++|+|+|.||+|+|||+..+ .++... .|..+|+|+.| ...++
T Consensus 185 dpktg~-~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~--~~~~~lsgHT~~VTCvrwGG~gli 261 (480)
T KOG0271|consen 185 DPKTGQ-QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG--TCVRTLSGHTASVTCVRWGGEGLI 261 (480)
T ss_pred cCCCCC-cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc--eEEEEeccCccceEEEEEcCCceE
Confidence 999884 56688999999999999976 4679999999999999999987 444443 47799999999 46666
Q ss_pred EEEcCCCeEEEEEecCC---EEEeccCCCeEEEEEe-------------CC-------------------------EEEE
Q 000744 1135 CFVSPATGVKVYNWSGA---IKHINFNKHVKSLVMT-------------GD-------------------------KLYC 1173 (1306)
Q Consensus 1135 ~~s~dg~~I~i~~~~~~---~~l~~~~~~V~sl~~s-------------~d-------------------------~L~s 1173 (1306)
..++.++.|++|..... ..+.+|..+|+.++.+ ++ .+++
T Consensus 262 ySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVS 341 (480)
T KOG0271|consen 262 YSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVS 341 (480)
T ss_pred EecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEE
Confidence 66666677999998753 2356788899988877 22 3999
Q ss_pred EECCCcEEEEECCCCc-eeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEecC-CCEEE
Q 000744 1174 GCSGYSIQEVDLGNLT-STTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFTTG-IDIQH 1250 (1306)
Q Consensus 1174 gs~Dg~I~iwDl~~~~-~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~~-~~V~s 1250 (1306)
|+.|.++.+|+....+ ++. ++.||+ -|+.+.|+|++.+++++|.|. +|++||-++|+.+.+|.+| ..|+.
T Consensus 342 gsDd~tlflW~p~~~kkpi~------rmtgHq~lVn~V~fSPd~r~IASaSFDk-SVkLW~g~tGk~lasfRGHv~~VYq 414 (480)
T KOG0271|consen 342 GSDDFTLFLWNPFKSKKPIT------RMTGHQALVNHVSFSPDGRYIASASFDK-SVKLWDGRTGKFLASFRGHVAAVYQ 414 (480)
T ss_pred ecCCceEEEecccccccchh------hhhchhhheeeEEECCCccEEEEeeccc-ceeeeeCCCcchhhhhhhccceeEE
Confidence 9999999999876543 443 567888 999999999999999999999 8999999999999999965 56999
Q ss_pred EEEcCc--EEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCCCccC
Q 000744 1251 LAVNSD--FIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1251 la~spd--~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~~La 1306 (1306)
++|+.| +|++||.|.++++|++++.+....+.+ |.+.|+++.|+|||+.++
T Consensus 415 vawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpG-----h~DEVf~vDwspDG~rV~ 467 (480)
T KOG0271|consen 415 VAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPG-----HADEVFAVDWSPDGQRVA 467 (480)
T ss_pred EEeccCccEEEEcCCCceEEEEEeeeeeecccCCC-----CCceEEEEEecCCCceee
Confidence 999999 999999999999999999998888875 889999999999998764
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-34 Score=313.32 Aligned_cols=268 Identities=18% Similarity=0.200 Sum_probs=229.2
Q ss_pred ccccccccccccccccc-----cEEEEEeCCCcEEEEeCCCce---EEcccCCCCEEEEEEeC-------CEEEEEECCC
Q 000744 992 GTLRKLKKYSAVVTDIQ-----KALMNLSSVNATELWHCNEVT---ELDSSTNGEVLSLIHLK-------GRVLSSHSDG 1056 (1306)
Q Consensus 992 ~~l~~l~ghs~~V~~i~-----~~Lasgs~Dg~I~IWd~~~~~---~i~~~H~~~V~sl~fsp-------d~LaSgs~Dg 1056 (1306)
.++.+.+||...|.++. +.||||+.||+|++||.++.+ ..+.+|+..|++++|.| .+|++++.||
T Consensus 148 Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg 227 (480)
T KOG0271|consen 148 TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDG 227 (480)
T ss_pred CcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCC
Confidence 34788999999999887 899999999999999988644 44689999999999987 2899999999
Q ss_pred cEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc-eeEEEeecCCCCeEEEEeC-----
Q 000744 1057 TIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEE-IHCLQVHNVKEAVHELTAN----- 1130 (1306)
Q Consensus 1057 ~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~-~~~i~~~~~~~~V~sl~~~----- 1130 (1306)
+|+|||+..+ .++..+.+|+.+|+|+.|--+| +++|||.|++|++|+...|. .+.++. |...|+.++.+
T Consensus 228 ~vrIWd~~~~--~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkG--HahwvN~lalsTdy~L 302 (480)
T KOG0271|consen 228 SVRIWDTKLG--TCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKG--HAHWVNHLALSTDYVL 302 (480)
T ss_pred CEEEEEccCc--eEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcc--cchheeeeeccchhhh
Confidence 9999999999 8999999999999999997555 99999999999999999874 233333 45778777753
Q ss_pred --------Cc-------------------------EEEEEcCCCeEEEEEecCCE----EEeccCCCeEEEEEeCC--EE
Q 000744 1131 --------AE-------------------------IACFVSPATGVKVYNWSGAI----KHINFNKHVKSLVMTGD--KL 1171 (1306)
Q Consensus 1131 --------~~-------------------------~v~~s~dg~~I~i~~~~~~~----~l~~~~~~V~sl~~s~d--~L 1171 (1306)
+. .+.-..|+..+.+|+-.... +..+|..-|+.+.|+|| ++
T Consensus 303 Rtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~I 382 (480)
T KOG0271|consen 303 RTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYI 382 (480)
T ss_pred hccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEE
Confidence 11 24445555557777766443 56689999999999998 79
Q ss_pred EEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEec-CCCEE
Q 000744 1172 YCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFTT-GIDIQ 1249 (1306)
Q Consensus 1172 ~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~-~~~V~ 1249 (1306)
++++.|.+|++||.++|+.+.+|. ||- +|+.++|+.+..+++++|.|. ++++||+++.+....+++ ...|+
T Consensus 383 ASaSFDkSVkLW~g~tGk~lasfR------GHv~~VYqvawsaDsRLlVS~SkDs-TLKvw~V~tkKl~~DLpGh~DEVf 455 (480)
T KOG0271|consen 383 ASASFDKSVKLWDGRTGKFLASFR------GHVAAVYQVAWSADSRLLVSGSKDS-TLKVWDVRTKKLKQDLPGHADEVF 455 (480)
T ss_pred EEeecccceeeeeCCCcchhhhhh------hccceeEEEEeccCccEEEEcCCCc-eEEEEEeeeeeecccCCCCCceEE
Confidence 999999999999999999988654 666 999999999999999999998 999999999999999995 45699
Q ss_pred EEEEcCc--EEEEEECCCcEEEEE
Q 000744 1250 HLAVNSD--FIFTATKCGTIEVWL 1271 (1306)
Q Consensus 1250 sla~spd--~Lasgs~Dg~I~IWd 1271 (1306)
++.|+|| .+++|+.|..+++|.
T Consensus 456 ~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 456 AVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEEecCCCceeecCCCceEEEeec
Confidence 9999999 999999999999995
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.4e-34 Score=314.08 Aligned_cols=248 Identities=18% Similarity=0.277 Sum_probs=224.2
Q ss_pred cEEEEEeCCCcEEEEeCCC--ceEEcccCCCCEEEEEEeCC----EEEEEECCCcEEEEeCCCCccceEEEEcccCccEE
Q 000744 1009 KALMNLSSVNATELWHCNE--VTELDSSTNGEVLSLIHLKG----RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVT 1082 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~--~~~i~~~H~~~V~sl~fspd----~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~ 1082 (1306)
+.|+|||.+|.+++|+..+ ....+.+|.+.|.++.|+|. .++||+.||++++|++++. .++..+.+|...|.
T Consensus 188 ~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e--~~l~~l~gH~~RVs 265 (459)
T KOG0272|consen 188 KHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE--TPLQDLEGHLARVS 265 (459)
T ss_pred CeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC--cchhhhhcchhhhe
Confidence 8899999999999999986 45667899999999999994 8999999999999999998 89999999999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeE
Q 000744 1083 CLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVK 1162 (1306)
Q Consensus 1083 sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~ 1162 (1306)
.++|+|+|++|.|++.|.+-++||++++. ..+..-+|...|.+++ |.+||.
T Consensus 266 ~VafHPsG~~L~TasfD~tWRlWD~~tk~-ElL~QEGHs~~v~~ia-------f~~DGS--------------------- 316 (459)
T KOG0272|consen 266 RVAFHPSGKFLGTASFDSTWRLWDLETKS-ELLLQEGHSKGVFSIA-------FQPDGS--------------------- 316 (459)
T ss_pred eeeecCCCceeeecccccchhhcccccch-hhHhhcccccccceeE-------ecCCCc---------------------
Confidence 99999999999999999999999999974 2233334567777777 777776
Q ss_pred EEEEeCCEEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEE
Q 000744 1163 SLVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGS 1241 (1306)
Q Consensus 1163 sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~ 1241 (1306)
.+++|+.|..-+|||+++|.++..+. ||. +|.+|.|+|+|..+++||.|+ +++|||++....+.+
T Consensus 317 -------L~~tGGlD~~~RvWDlRtgr~im~L~------gH~k~I~~V~fsPNGy~lATgs~Dn-t~kVWDLR~r~~ly~ 382 (459)
T KOG0272|consen 317 -------LAATGGLDSLGRVWDLRTGRCIMFLA------GHIKEILSVAFSPNGYHLATGSSDN-TCKVWDLRMRSELYT 382 (459)
T ss_pred -------eeeccCccchhheeecccCcEEEEec------ccccceeeEeECCCceEEeecCCCC-cEEEeeeccccccee
Confidence 68899999999999999999998655 666 999999999999999999998 899999999999999
Q ss_pred EecCCC-EEEEEEcCc---EEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCCCccC
Q 000744 1242 FTTGID-IQHLAVNSD---FIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1242 l~~~~~-V~sla~spd---~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~~La 1306 (1306)
+..|.. |+.|.|+|. +|+|+|.|++++||...++.+++++.+ |.+.|.++.++|||++|+
T Consensus 383 ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaG-----He~kV~s~Dis~d~~~i~ 446 (459)
T KOG0272|consen 383 IPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAG-----HEGKVISLDISPDSQAIA 446 (459)
T ss_pred cccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcC-----CccceEEEEeccCCceEE
Confidence 996655 999999985 999999999999999999999999986 889999999999999874
No 4
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-31 Score=282.46 Aligned_cols=267 Identities=17% Similarity=0.253 Sum_probs=226.5
Q ss_pred cccccccccccccccc------cEEEEEeCCCcEEEEeCCC-------ceEEcccCCCCEEEEEEeCC--EEEEEECCCc
Q 000744 993 TLRKLKKYSAVVTDIQ------KALMNLSSVNATELWHCNE-------VTELDSSTNGEVLSLIHLKG--RVLSSHSDGT 1057 (1306)
Q Consensus 993 ~l~~l~ghs~~V~~i~------~~Lasgs~Dg~I~IWd~~~-------~~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~ 1057 (1306)
...+++||.+.|..+. +++.+++.|.++.+|++.. .+..+.||...|..+..++| +.++++.|++
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~ 86 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGT 86 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccce
Confidence 4568899999998876 8899999999999999863 45667899999999999986 9999999999
Q ss_pred EEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEE
Q 000744 1058 IKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFV 1137 (1306)
Q Consensus 1058 I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s 1137 (1306)
+++||+.++ +..+.|.+|...|.+++|++|.++++|||.|++|++||+.++....+....
T Consensus 87 lrlWDl~~g--~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~------------------ 146 (315)
T KOG0279|consen 87 LRLWDLATG--ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDS------------------ 146 (315)
T ss_pred EEEEEecCC--cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCC------------------
Confidence 999999999 899999999999999999999999999999999999999875211111111
Q ss_pred cCCCeEEEEEecCCEEEeccCCCeEEEEEeCC----EEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEe
Q 000744 1138 SPATGVKVYNWSGAIKHINFNKHVKSLVMTGD----KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMH 1212 (1306)
Q Consensus 1138 ~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d----~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s 1212 (1306)
+.++|+|+.|+|+ +|++++.|+++++||+++.+....|. ||+ .++.+.++
T Consensus 147 -------------------~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~------gh~~~v~t~~vS 201 (315)
T KOG0279|consen 147 -------------------HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFI------GHSGYVNTVTVS 201 (315)
T ss_pred -------------------CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccc------cccccEEEEEEC
Confidence 2456777777765 69999999999999999998887544 677 99999999
Q ss_pred CCcEEEEEEecCCCEEEEEECCCCceEEEEecCCCEEEEEEcCc-EEEEEECCCcEEEEECCCCeEEEEEecccCCC---
Q 000744 1213 NGLLFAGGSSVDGTAGKVFSISSKTAVGSFTTGIDIQHLAVNSD-FIFTATKCGTIEVWLKERVTRVASVKANNSGG--- 1288 (1306)
Q Consensus 1213 ~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~~~~V~sla~spd-~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~--- 1288 (1306)
||+.++++|+.|| .+.+||++.++.+.++.+...|.+++|+|+ +.++...+..|+|||++++.++..+.....+.
T Consensus 202 pDGslcasGgkdg-~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~ 280 (315)
T KOG0279|consen 202 PDGSLCASGGKDG-EAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSK 280 (315)
T ss_pred CCCCEEecCCCCc-eEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccc
Confidence 9999999999898 899999999999999999999999999999 76677777789999999999988876422222
Q ss_pred -CCCCeEEEEEcCCCCcc
Q 000744 1289 -GHAKITCLGTGVDGHPY 1305 (1306)
Q Consensus 1289 -~~~~V~slafSpdg~~L 1305 (1306)
......+++|++||+.|
T Consensus 281 ~~~~~clslaws~dG~tL 298 (315)
T KOG0279|consen 281 AGDPICLSLAWSADGQTL 298 (315)
T ss_pred cCCcEEEEEEEcCCCcEE
Confidence 11335678999999875
No 5
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=3e-29 Score=279.74 Aligned_cols=287 Identities=17% Similarity=0.224 Sum_probs=239.8
Q ss_pred ccccccccc------cEEEEEeCCCcEEEEeCCC------ceEEc----------ccCCCCEEEEEEeC--CEEEEEECC
Q 000744 1000 YSAVVTDIQ------KALMNLSSVNATELWHCNE------VTELD----------SSTNGEVLSLIHLK--GRVLSSHSD 1055 (1306)
Q Consensus 1000 hs~~V~~i~------~~Lasgs~Dg~I~IWd~~~------~~~i~----------~~H~~~V~sl~fsp--d~LaSgs~D 1055 (1306)
|...|.... .++++|+.|.+.++|++.. .+..+ ...+..|++++|+. +.|++|+.|
T Consensus 177 ~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~ 256 (524)
T KOG0273|consen 177 HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSED 256 (524)
T ss_pred CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecC
Confidence 777776554 5899999999999999863 11111 11256799999996 499999999
Q ss_pred CcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeec-CCCCeEEEEe--CCc
Q 000744 1056 GTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHN-VKEAVHELTA--NAE 1132 (1306)
Q Consensus 1056 g~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~-~~~~V~sl~~--~~~ 1132 (1306)
|.+++|+... ..+.++..|+++|.++.|+.+|++|++++.||++.+||..++. +.+.+. |..+-.++.| +..
T Consensus 257 G~~riw~~~G---~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~--~~q~f~~~s~~~lDVdW~~~~~ 331 (524)
T KOG0273|consen 257 GEARIWNKDG---NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGT--VKQQFEFHSAPALDVDWQSNDE 331 (524)
T ss_pred cEEEEEecCc---hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCce--EEEeeeeccCCccceEEecCce
Confidence 9999999976 4788999999999999999999999999999999999999884 333333 3344467888 677
Q ss_pred EEEEEcCCCeEEEEEecC---CEEEeccCCCeEEEEEeCC--EEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cE
Q 000744 1133 IACFVSPATGVKVYNWSG---AIKHINFNKHVKSLVMTGD--KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TI 1206 (1306)
Q Consensus 1133 ~v~~s~dg~~I~i~~~~~---~~~l~~~~~~V~sl~~s~d--~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I 1206 (1306)
+++.++||. |.++..+. ...+.+|.+.|.++.|+|. .|+++|.|++++||++....... .+.+|+ .|
T Consensus 332 F~ts~td~~-i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~------~l~~Hskei 404 (524)
T KOG0273|consen 332 FATSSTDGC-IHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVH------DLQAHSKEI 404 (524)
T ss_pred EeecCCCce-EEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchh------hhhhhccce
Confidence 788888887 88888873 3567789999999999954 79999999999999998887766 456777 99
Q ss_pred EEEEEeCC---------cEEEEEEecCCCEEEEEECCCCceEEEE-ecCCCEEEEEEcCc--EEEEEECCCcEEEEECCC
Q 000744 1207 HSLHMHNG---------LLFAGGSSVDGTAGKVFSISSKTAVGSF-TTGIDIQHLAVNSD--FIFTATKCGTIEVWLKER 1274 (1306)
Q Consensus 1207 ~sl~~s~~---------~~llas~s~Dg~~I~IWD~~t~~~l~~l-~~~~~V~sla~spd--~Lasgs~Dg~I~IWd~~t 1274 (1306)
+.+.|+|. +..+++++.|+ +|++||+..+.++++| +|+.+|++++|+|+ ++++|+.||.|.||+.++
T Consensus 405 ~t~~wsp~g~v~~n~~~~~~l~sas~ds-tV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~ 483 (524)
T KOG0273|consen 405 YTIKWSPTGPVTSNPNMNLMLASASFDS-TVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKT 483 (524)
T ss_pred eeEeecCCCCccCCCcCCceEEEeecCC-eEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccc
Confidence 99999853 45666777798 9999999999999999 57788999999998 999999999999999999
Q ss_pred CeEEEEEecccCCCCCCCeEEEEEcCCCCcc
Q 000744 1275 VTRVASVKANNSGGGHAKITCLGTGVDGHPY 1305 (1306)
Q Consensus 1275 g~~l~~l~~~~~~~~~~~V~slafSpdg~~L 1305 (1306)
++.++.+.+ .+.|..++|+.+|.+|
T Consensus 484 ~~l~~s~~~------~~~Ifel~Wn~~G~kl 508 (524)
T KOG0273|consen 484 GKLVKSYQG------TGGIFELCWNAAGDKL 508 (524)
T ss_pred hheeEeecC------CCeEEEEEEcCCCCEE
Confidence 999999983 3579999999999876
No 6
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=2.2e-28 Score=258.79 Aligned_cols=266 Identities=17% Similarity=0.261 Sum_probs=226.7
Q ss_pred hccccccccccccccccc-----cEEEEEeCCCcEEEEeCCCc--eEEcccCCCCEEEEEEeCC--EEEEEECCCcEEEE
Q 000744 991 YGTLRKLKKYSAVVTDIQ-----KALMNLSSVNATELWHCNEV--TELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMW 1061 (1306)
Q Consensus 991 ~~~l~~l~ghs~~V~~i~-----~~Lasgs~Dg~I~IWd~~~~--~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vW 1061 (1306)
++.-++|+||.+.|.++. +.|+|+|.||.+.|||.-+. .+...-...+|..++|+|. ++++|+-|+...||
T Consensus 45 ~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 45 MRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIY 124 (343)
T ss_pred eeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEE
Confidence 466799999999999887 89999999999999997653 4444566889999999994 99999999999999
Q ss_pred eCCCC----ccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEE
Q 000744 1062 DSGKR----VLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFV 1137 (1306)
Q Consensus 1062 d~~t~----~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s 1137 (1306)
++.+. .....+.+.+|++.+.|+.|-+ ...|+|||.|.++.+||+++++ +....+.|.+.|.++. ++
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~-~~~~f~GH~gDV~sls-------l~ 195 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQ-QTQVFHGHTGDVMSLS-------LS 195 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccce-EEEEecCCcccEEEEe-------cC
Confidence 99743 2345677899999999999977 4588999999999999999983 2222234556666666 44
Q ss_pred c-CCCeEEEEEecCCEEEeccCCCeEEEEEeCCEEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeCCc
Q 000744 1138 S-PATGVKVYNWSGAIKHINFNKHVKSLVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGL 1215 (1306)
Q Consensus 1138 ~-dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~ 1215 (1306)
| ++ +.+++|+.|++.++||++.+.++++|. ||. .|+++.|.|++
T Consensus 196 p~~~----------------------------ntFvSg~cD~~aklWD~R~~~c~qtF~------ghesDINsv~ffP~G 241 (343)
T KOG0286|consen 196 PSDG----------------------------NTFVSGGCDKSAKLWDVRSGQCVQTFE------GHESDINSVRFFPSG 241 (343)
T ss_pred CCCC----------------------------CeEEecccccceeeeeccCcceeEeec------ccccccceEEEccCC
Confidence 4 33 379999999999999999999999766 666 99999999999
Q ss_pred EEEEEEecCCCEEEEEECCCCceEEEEecC---CCEEEEEEcCc--EEEEEECCCcEEEEECCCCeEEEEEecccCCCCC
Q 000744 1216 LFAGGSSVDGTAGKVFSISSKTAVGSFTTG---IDIQHLAVNSD--FIFTATKCGTIEVWLKERVTRVASVKANNSGGGH 1290 (1306)
Q Consensus 1216 ~llas~s~Dg~~I~IWD~~t~~~l~~l~~~---~~V~sla~spd--~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~ 1290 (1306)
.-+++|+.|+ +.++||++..+.+..+.+. .+|++++|+.. +|++|..|.++.+||.-+++.+..+.+ |.
T Consensus 242 ~afatGSDD~-tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~G-----He 315 (343)
T KOG0286|consen 242 DAFATGSDDA-TCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAG-----HE 315 (343)
T ss_pred CeeeecCCCc-eeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeec-----cC
Confidence 9999998777 9999999999999999863 46999999877 999999999999999999999999986 88
Q ss_pred CCeEEEEEcCCCCcc
Q 000744 1291 AKITCLGTGVDGHPY 1305 (1306)
Q Consensus 1291 ~~V~slafSpdg~~L 1305 (1306)
++|+++..+|||.-+
T Consensus 316 NRvScl~~s~DG~av 330 (343)
T KOG0286|consen 316 NRVSCLGVSPDGMAV 330 (343)
T ss_pred CeeEEEEECCCCcEE
Confidence 999999999999765
No 7
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=3.2e-28 Score=252.05 Aligned_cols=281 Identities=15% Similarity=0.196 Sum_probs=231.3
Q ss_pred cEEEEEeCCCcEEEEeCCCceEEc--ccCCCCEEEEEEeCC--EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEE
Q 000744 1009 KALMNLSSVNATELWHCNEVTELD--SSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCL 1084 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~~~i~--~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl 1084 (1306)
-+|+|+|.|.+||+|...++.... ....+.|..+...|+ .|++++ ...|++||++++...++.+|.+|++.|+++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 479999999999999998755443 344788999999997 555555 567999999998777999999999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEe---CCcEEEEEcCCCeEEEEEecCCEEE----ecc
Q 000744 1085 YVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTA---NAEIACFVSPATGVKVYNWSGAIKH----INF 1157 (1306)
Q Consensus 1085 ~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~---~~~~v~~s~dg~~I~i~~~~~~~~l----~~~ 1157 (1306)
.|..+|++++|||.||++||||++.. .+.+.+.+..+|+++.. ...+++...+|. |.+|+....... -+.
T Consensus 90 gF~~dgrWMyTgseDgt~kIWdlR~~--~~qR~~~~~spVn~vvlhpnQteLis~dqsg~-irvWDl~~~~c~~~liPe~ 166 (311)
T KOG0315|consen 90 GFQCDGRWMYTGSEDGTVKIWDLRSL--SCQRNYQHNSPVNTVVLHPNQTELISGDQSGN-IRVWDLGENSCTHELIPED 166 (311)
T ss_pred EEeecCeEEEecCCCceEEEEeccCc--ccchhccCCCCcceEEecCCcceEEeecCCCc-EEEEEccCCccccccCCCC
Confidence 99999999999999999999999984 67777888899999987 223444444454 778877654221 234
Q ss_pred CCCeEEEEEeCC--EEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECC
Q 000744 1158 NKHVKSLVMTGD--KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSIS 1234 (1306)
Q Consensus 1158 ~~~V~sl~~s~d--~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~ 1234 (1306)
...|.++.+.++ +++.+...|..++|++-+.+....+.+..+++.|+ .|..+.++|+..+++++|.|. +++||+..
T Consensus 167 ~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdk-tv~iwn~~ 245 (311)
T KOG0315|consen 167 DTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDK-TVKIWNTD 245 (311)
T ss_pred CcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCc-eEEEEecC
Confidence 567899988866 68888889999999999877666666666788999 999999999999999999898 99999999
Q ss_pred CC-ceEEEEec-CCCEEEEEEcCc--EEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEc
Q 000744 1235 SK-TAVGSFTT-GIDIQHLAVNSD--FIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTG 1299 (1306)
Q Consensus 1235 t~-~~l~~l~~-~~~V~sla~spd--~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafS 1299 (1306)
+. +....+.+ +.+++..+||.| ||+||+.|+++++|++..++.+..+.+ |+....|++.+
T Consensus 246 ~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~g-----h~K~~vc~~ln 309 (311)
T KOG0315|consen 246 DFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQG-----HHKAAVCVALN 309 (311)
T ss_pred CceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCC-----cccccEEEEee
Confidence 87 44455554 457999999998 999999999999999999999999975 66566666654
No 8
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=5.1e-30 Score=282.78 Aligned_cols=234 Identities=18% Similarity=0.233 Sum_probs=204.9
Q ss_pred ccccccccccccccccc-------cEEEEEeCCCcEEEEeCCC--ceEEcccCCCCEEEEEEeCC--EEEEEECCCcEEE
Q 000744 992 GTLRKLKKYSAVVTDIQ-------KALMNLSSVNATELWHCNE--VTELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKM 1060 (1306)
Q Consensus 992 ~~l~~l~ghs~~V~~i~-------~~Lasgs~Dg~I~IWd~~~--~~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~v 1060 (1306)
+.+.+|+||++.|.++. .-+|||+.||++++|++.+ ....+.+|...|..++|+|+ +|.|++.|.+-++
T Consensus 208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRl 287 (459)
T KOG0272|consen 208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRL 287 (459)
T ss_pred ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhh
Confidence 77899999998887654 4799999999999999986 44456799999999999995 9999999999999
Q ss_pred EeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeec-CCCCeEEEEeCCcEEEEEcC
Q 000744 1061 WDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHN-VKEAVHELTANAEIACFVSP 1139 (1306)
Q Consensus 1061 Wd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~-~~~~V~sl~~~~~~v~~s~d 1139 (1306)
||+.++ ..+....||...|.+++|++||..++|||.|..-+|||++++ +++..+. |..+|.++. |+|+
T Consensus 288 WD~~tk--~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtg--r~im~L~gH~k~I~~V~-------fsPN 356 (459)
T KOG0272|consen 288 WDLETK--SELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTG--RCIMFLAGHIKEILSVA-------FSPN 356 (459)
T ss_pred cccccc--hhhHhhcccccccceeEecCCCceeeccCccchhheeecccC--cEEEEecccccceeeEe-------ECCC
Confidence 999999 777778899999999999999999999999999999999998 4444432 445555555 5555
Q ss_pred CCeEEEEEecCCEEEeccCCCeEEEEEeCCEEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeC-CcEE
Q 000744 1140 ATGVKVYNWSGAIKHINFNKHVKSLVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHN-GLLF 1217 (1306)
Q Consensus 1140 g~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~-~~~l 1217 (1306)
|. +++|||.|++++|||++..+.+.+ +.+|. -|+.|.|+| .+.+
T Consensus 357 Gy----------------------------~lATgs~Dnt~kVWDLR~r~~ly~------ipAH~nlVS~Vk~~p~~g~f 402 (459)
T KOG0272|consen 357 GY----------------------------HLATGSSDNTCKVWDLRMRSELYT------IPAHSNLVSQVKYSPQEGYF 402 (459)
T ss_pred ce----------------------------EEeecCCCCcEEEeeeccccccee------cccccchhhheEecccCCeE
Confidence 54 699999999999999999888775 45777 899999996 8999
Q ss_pred EEEEecCCCEEEEEECCCCceEEEEecC-CCEEEEEEcCc--EEEEEECCCcEEEEE
Q 000744 1218 AGGSSVDGTAGKVFSISSKTAVGSFTTG-IDIQHLAVNSD--FIFTATKCGTIEVWL 1271 (1306)
Q Consensus 1218 las~s~Dg~~I~IWD~~t~~~l~~l~~~-~~V~sla~spd--~Lasgs~Dg~I~IWd 1271 (1306)
+++++.|+ +++||...++++++++.+| +.|.++++++| +++|++.|.+|++|.
T Consensus 403 L~TasyD~-t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 403 LVTASYDN-TVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEEcccCc-ceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999999 8999999999999999965 56999999998 999999999999996
No 9
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=1e-28 Score=266.58 Aligned_cols=267 Identities=19% Similarity=0.252 Sum_probs=224.3
Q ss_pred ccccccccccccccccc-----cEEEEEeCCCcEEEEeCCC--ceEEcccCCCCEEEEEEeCC--EEEEEECCCcEEEEe
Q 000744 992 GTLRKLKKYSAVVTDIQ-----KALMNLSSVNATELWHCNE--VTELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWD 1062 (1306)
Q Consensus 992 ~~l~~l~ghs~~V~~i~-----~~Lasgs~Dg~I~IWd~~~--~~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd 1062 (1306)
+..+.++||.+.|.++. ++|+||+.|++|+|||+.+ ......||...|..+++|+. ++++++.|+.|+.||
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD 221 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence 45678899999999887 8999999999999999986 45567899999999999985 999999999999999
Q ss_pred CCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCe
Q 000744 1063 SGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATG 1142 (1306)
Q Consensus 1063 ~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~ 1142 (1306)
++.+ +.++.+.||-..|.|++.+|.-+.|++|+.|.+++|||+++. ..|..+.
T Consensus 222 Le~n--kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr-----------~~V~~l~-------------- 274 (460)
T KOG0285|consen 222 LEYN--KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTR-----------ASVHVLS-------------- 274 (460)
T ss_pred chhh--hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeeccc-----------ceEEEec--------------
Confidence 9998 899999999999999999999999999999999999999996 2222221
Q ss_pred EEEEEecCCEEEeccCCCeEEEEEe--CCEEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeCCcEEEE
Q 000744 1143 VKVYNWSGAIKHINFNKHVKSLVMT--GDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAG 1219 (1306)
Q Consensus 1143 I~i~~~~~~~~l~~~~~~V~sl~~s--~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~lla 1219 (1306)
+|..+|.++.+. ...+++||.|++|++||++.|+...+.. .|. .|++++.+|....++
T Consensus 275 -------------GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt------~hkksvral~lhP~e~~fA 335 (460)
T KOG0285|consen 275 -------------GHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLT------HHKKSVRALCLHPKENLFA 335 (460)
T ss_pred -------------CCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeee------cccceeeEEecCCchhhhh
Confidence 244455555555 2369999999999999999999887544 555 999999999999999
Q ss_pred EEecCCCEEEEEECCCCceEEEEecCC-CEEEEEEcCc-EEEEEECCCcEEEEECCCCeEEEEEecccC-CC--CCCCeE
Q 000744 1220 GSSVDGTAGKVFSISSKTAVGSFTTGI-DIQHLAVNSD-FIFTATKCGTIEVWLKERVTRVASVKANNS-GG--GHAKIT 1294 (1306)
Q Consensus 1220 s~s~Dg~~I~IWD~~t~~~l~~l~~~~-~V~sla~spd-~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~-~~--~~~~V~ 1294 (1306)
+++.|+ |+-|++..|..+..+.+|. .|++++.+.| ++++|+++|.|.+||.++|...+.++.... |. ....|+
T Consensus 336 Sas~dn--ik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~ 413 (460)
T KOG0285|consen 336 SASPDN--IKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIF 413 (460)
T ss_pred ccCCcc--ceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCcccccccee
Confidence 988776 9999999999999988654 5899999988 999999999999999999987776643110 11 226799
Q ss_pred EEEEcCCCCccC
Q 000744 1295 CLGTGVDGHPYK 1306 (1306)
Q Consensus 1295 slafSpdg~~La 1306 (1306)
+.+|+..|..|+
T Consensus 414 as~fDktg~rli 425 (460)
T KOG0285|consen 414 ASCFDKTGSRLI 425 (460)
T ss_pred EEeecccCceEE
Confidence 999998887653
No 10
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.5e-27 Score=258.97 Aligned_cols=269 Identities=16% Similarity=0.246 Sum_probs=230.6
Q ss_pred ccccccccccccccc-----cEEEEEeCCCcEEEEeCCC--ceEEcccCCCCEEEEEEeC--CEEEEEECCCcEEEEeCC
Q 000744 994 LRKLKKYSAVVTDIQ-----KALMNLSSVNATELWHCNE--VTELDSSTNGEVLSLIHLK--GRVLSSHSDGTIKMWDSG 1064 (1306)
Q Consensus 994 l~~l~ghs~~V~~i~-----~~Lasgs~Dg~I~IWd~~~--~~~i~~~H~~~V~sl~fsp--d~LaSgs~Dg~I~vWd~~ 1064 (1306)
...+.||...|+.+. .++++++.|++|++||..+ ......+|...|.+|+|+. .++++++.|=.+++||..
T Consensus 101 ~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~ 180 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFD 180 (406)
T ss_pred hhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHH
Confidence 445667777776655 6788999999999999985 4556689999999999997 399999999999999998
Q ss_pred CCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeec-CCCCeEEEEe--CCcEEEEEcCCC
Q 000744 1065 KRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHN-VKEAVHELTA--NAEIACFVSPAT 1141 (1306)
Q Consensus 1065 t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~-~~~~V~sl~~--~~~~v~~s~dg~ 1141 (1306)
+. .+++....+|+..|.++.|-|.|.+++|++.|.+|+.|++.++ .|+.++. |...|..+.. ++.++.......
T Consensus 181 ~~-~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg--~cv~t~~~h~ewvr~v~v~~DGti~As~s~dq 257 (406)
T KOG0295|consen 181 TF-FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG--YCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQ 257 (406)
T ss_pred HH-HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccc--eeEEeccCchHhEEEEEecCCeeEEEecCCCc
Confidence 74 4888999999999999999999999999999999999999998 7777765 7788998887 445555555667
Q ss_pred eEEEEEecCC---EEEeccCCCeEEEEEeCC-----------------EEEEEECCCcEEEEECCCCceeEEecCccccc
Q 000744 1142 GVKVYNWSGA---IKHINFNKHVKSLVMTGD-----------------KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLL 1201 (1306)
Q Consensus 1142 ~I~i~~~~~~---~~l~~~~~~V~sl~~s~d-----------------~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~ 1201 (1306)
.+.+|..... ..+.+|..+|.|++|.|. ++.+++.|++|++||+.++.++.+ +.
T Consensus 258 tl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~t------L~ 331 (406)
T KOG0295|consen 258 TLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFT------LV 331 (406)
T ss_pred eEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEE------Ee
Confidence 7889988855 556678999999998632 589999999999999999999985 55
Q ss_pred CCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEec-CCCEEEEEEcCc--EEEEEECCCcEEEEEC
Q 000744 1202 GKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFTT-GIDIQHLAVNSD--FIFTATKCGTIEVWLK 1272 (1306)
Q Consensus 1202 gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~-~~~V~sla~spd--~Lasgs~Dg~I~IWd~ 1272 (1306)
||. +|+.++|+|+|.|+++...|+ ++++||+++++|..++.. ..-|++++|+.+ +++||+-|.++++|..
T Consensus 332 ghdnwVr~~af~p~Gkyi~ScaDDk-tlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 332 GHDNWVRGVAFSPGGKYILSCADDK-TLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred cccceeeeeEEcCCCeEEEEEecCC-cEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 777 999999999999999997565 999999999999999984 445999999988 9999999999999974
No 11
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.96 E-value=2.7e-27 Score=249.49 Aligned_cols=239 Identities=19% Similarity=0.239 Sum_probs=196.8
Q ss_pred hhhccccccccccccccccc-----cEEEEEeCCCcEEEEeCCC--ceEEcccCCCCEEEEEEeCC--EEEEEECCCcEE
Q 000744 989 CIYGTLRKLKKYSAVVTDIQ-----KALMNLSSVNATELWHCNE--VTELDSSTNGEVLSLIHLKG--RVLSSHSDGTIK 1059 (1306)
Q Consensus 989 ~~~~~l~~l~ghs~~V~~i~-----~~Lasgs~Dg~I~IWd~~~--~~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~ 1059 (1306)
..+.+++.++||+-.|+++. ++..+++.|+++++||+.+ ..+.+.+|...|.+++|++| +|+||+.|.+|+
T Consensus 51 ~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTik 130 (315)
T KOG0279|consen 51 KYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIK 130 (315)
T ss_pred ccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceee
Confidence 44577999999999998876 8999999999999999986 45667899999999999996 999999999999
Q ss_pred EEeCCCCccceEEEEccc--CccEEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEE
Q 000744 1060 MWDSGKRVLRLIQEVREH--TRAVTCLYVPSS--GDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIAC 1135 (1306)
Q Consensus 1060 vWd~~t~~~~~i~~l~~H--~~~V~sl~fspd--g~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~ 1135 (1306)
+||+.++ +..++..+ .+.|+|+.|+|+ ..+|+++|.|++||+||+++.+.+. ..+.|.+.++.++
T Consensus 131 lwnt~g~---ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~-~~~gh~~~v~t~~------- 199 (315)
T KOG0279|consen 131 LWNTLGV---CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRT-TFIGHSGYVNTVT------- 199 (315)
T ss_pred eeeeccc---EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhh-ccccccccEEEEE-------
Confidence 9999875 55565544 789999999997 7899999999999999999863211 1123445566665
Q ss_pred EEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCCEEEEEECCCcEEEEECCCCceeEEecCcccccCCccEEEEEEeCCc
Q 000744 1136 FVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGL 1215 (1306)
Q Consensus 1136 ~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~ 1215 (1306)
++|||. .+++|+.||.+.+||++.++.++.+. +...|++++|+|+.
T Consensus 200 vSpDGs----------------------------lcasGgkdg~~~LwdL~~~k~lysl~------a~~~v~sl~fspnr 245 (315)
T KOG0279|consen 200 VSPDGS----------------------------LCASGGKDGEAMLWDLNEGKNLYSLE------AFDIVNSLCFSPNR 245 (315)
T ss_pred ECCCCC----------------------------EEecCCCCceEEEEEccCCceeEecc------CCCeEeeEEecCCc
Confidence 666665 68899999999999999999987543 22299999999999
Q ss_pred EEEEEEecCCCEEEEEECCCCceEEEEec----C------CCEEEEEEcCc--EEEEEECCCcEEEEECCC
Q 000744 1216 LFAGGSSVDGTAGKVFSISSKTAVGSFTT----G------IDIQHLAVNSD--FIFTATKCGTIEVWLKER 1274 (1306)
Q Consensus 1216 ~llas~s~Dg~~I~IWD~~t~~~l~~l~~----~------~~V~sla~spd--~Lasgs~Dg~I~IWd~~t 1274 (1306)
..++.+. +. .|+|||+.++.++..+.. . -...+++|++| .|++|-.|+.|++|.+..
T Consensus 246 ywL~~at-~~-sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 246 YWLCAAT-AT-SIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred eeEeecc-CC-ceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEeec
Confidence 9888773 44 699999999998887762 1 12577899988 999999999999998753
No 12
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.95 E-value=1.5e-28 Score=263.75 Aligned_cols=265 Identities=19% Similarity=0.249 Sum_probs=222.6
Q ss_pred cccccccc---cEEEEEeCCCcEEEEeCCC--ceEEcccCCCCEEEEEEeCCEEEEEECCCcEEEEeCCCCccceEEEEc
Q 000744 1001 SAVVTDIQ---KALMNLSSVNATELWHCNE--VTELDSSTNGEVLSLIHLKGRVLSSHSDGTIKMWDSGKRVLRLIQEVR 1075 (1306)
Q Consensus 1001 s~~V~~i~---~~Lasgs~Dg~I~IWd~~~--~~~i~~~H~~~V~sl~fspd~LaSgs~Dg~I~vWd~~t~~~~~i~~l~ 1075 (1306)
+..|.|+. +.+++|..|++|+|||..+ +..+..||++.|.|+.|....|++||.|.+|+|||++++ +++.++-
T Consensus 197 skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tg--e~l~tli 274 (499)
T KOG0281|consen 197 SKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTG--EPLNTLI 274 (499)
T ss_pred CCceEEEEecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCC--chhhHHh
Confidence 45666766 7899999999999999885 567789999999999999999999999999999999999 9999999
Q ss_pred ccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc-eeEEEe-ecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCE-
Q 000744 1076 EHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEE-IHCLQV-HNVKEAVHELTANAEIACFVSPATGVKVYNWSGAI- 1152 (1306)
Q Consensus 1076 ~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~-~~~i~~-~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~- 1152 (1306)
+|...|..+.|+ +.+++|+|.|.+|.|||+.... ..+... .+|...|..+.|+...+...+.++.|++|+.+...
T Consensus 275 hHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~ef 352 (499)
T KOG0281|consen 275 HHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEF 352 (499)
T ss_pred hhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccceee
Confidence 999999999996 4599999999999999998764 112122 24678999999977777777777789999998432
Q ss_pred --EEeccCCCeEEEEEeCCEEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEE
Q 000744 1153 --KHINFNKHVKSLVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGK 1229 (1306)
Q Consensus 1153 --~l~~~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~ 1229 (1306)
.+.+|...|.|+.+.+..+++|+.|.+|++||+..|.++.. +.||. -|+++.|++... ++|+.|| +|+
T Consensus 353 vRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRv------LeGHEeLvRciRFd~krI--VSGaYDG-kik 423 (499)
T KOG0281|consen 353 VRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRV------LEGHEELVRCIRFDNKRI--VSGAYDG-KIK 423 (499)
T ss_pred ehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHH------HhchHHhhhheeecCcee--eeccccc-eEE
Confidence 34579999999999999999999999999999999999984 55777 899999976553 3455798 799
Q ss_pred EEECCCCc---------eEEEEe-cCCCEEEEEEcCcEEEEEECCCcEEEEECCCCeEE
Q 000744 1230 VFSISSKT---------AVGSFT-TGIDIQHLAVNSDFIFTATKCGTIEVWLKERVTRV 1278 (1306)
Q Consensus 1230 IWD~~t~~---------~l~~l~-~~~~V~sla~spd~Lasgs~Dg~I~IWd~~tg~~l 1278 (1306)
|||+.++. |+.++. |.+.|..+.|..-.|++++.|.+|-|||+.++-.-
T Consensus 424 vWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 424 VWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred EEecccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcCCCCcc
Confidence 99998753 333333 55689999998889999999999999999887544
No 13
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.6e-27 Score=243.38 Aligned_cols=259 Identities=17% Similarity=0.256 Sum_probs=218.6
Q ss_pred cccccccccccccccc-----cEEEEEeCCCcEEEEeCCC--ceEEcccCCCCEEEEEEeCC--EEEEEECCCcEEEEeC
Q 000744 993 TLRKLKKYSAVVTDIQ-----KALMNLSSVNATELWHCNE--VTELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDS 1063 (1306)
Q Consensus 993 ~l~~l~ghs~~V~~i~-----~~Lasgs~Dg~I~IWd~~~--~~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~ 1063 (1306)
.++.+++|.+.|..+. +|..++++|.+|++||... ..+...+|...|..++.+.| .+++|+.|..|.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 4677889999887766 8999999999999999875 56777899999999988764 9999999999999999
Q ss_pred CCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeE
Q 000744 1064 GKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGV 1143 (1306)
Q Consensus 1064 ~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I 1143 (1306)
.+| +.++.+.+|.+.|+.+.|+.+...++|||.|.++++||-++...++++.++.
T Consensus 89 ~TG--kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQilde----------------------- 143 (307)
T KOG0316|consen 89 NTG--KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDE----------------------- 143 (307)
T ss_pred ccC--eeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhh-----------------------
Confidence 999 8999999999999999999999999999999999999999976666655541
Q ss_pred EEEEecCCEEEeccCCCeEEEEEeCCEEEEEECCCcEEEEECCCCceeEEecCcccccCCccEEEEEEeCCcEEEEEEec
Q 000744 1144 KVYNWSGAIKHINFNKHVKSLVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLLFAGGSSV 1223 (1306)
Q Consensus 1144 ~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~s~ 1223 (1306)
....|.++..+...|++|+.||+++.||++.|+....+-++ ||+++.|++++.....++.
T Consensus 144 -------------a~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~-------pit~vs~s~d~nc~La~~l 203 (307)
T KOG0316|consen 144 -------------AKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGH-------PITSVSFSKDGNCSLASSL 203 (307)
T ss_pred -------------hcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhcCC-------cceeEEecCCCCEEEEeec
Confidence 22345555566667999999999999999999877644332 8999999988888778888
Q ss_pred CCCEEEEEECCCCceEEEEecCCC---EEEEEEcCc--EEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCC-eEEEE
Q 000744 1224 DGTAGKVFSISSKTAVGSFTTGID---IQHLAVNSD--FIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAK-ITCLG 1297 (1306)
Q Consensus 1224 Dg~~I~IWD~~t~~~l~~l~~~~~---V~sla~spd--~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~-V~sla 1297 (1306)
|+ ++++.|-.+|+++..+++|.. -...+++.. .+++||+||.|++||+.....+..+.. +... |++++
T Consensus 204 ~s-tlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~-----~~~v~v~dl~ 277 (307)
T KOG0316|consen 204 DS-TLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSV-----VSTVIVTDLS 277 (307)
T ss_pred cc-eeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeecc-----CCceeEEeee
Confidence 98 899999999999999997654 234455543 999999999999999999999988874 3334 89999
Q ss_pred EcCCC
Q 000744 1298 TGVDG 1302 (1306)
Q Consensus 1298 fSpdg 1302 (1306)
++|.-
T Consensus 278 ~hp~~ 282 (307)
T KOG0316|consen 278 CHPTM 282 (307)
T ss_pred cccCc
Confidence 99864
No 14
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=4e-27 Score=275.10 Aligned_cols=308 Identities=14% Similarity=0.207 Sum_probs=232.8
Q ss_pred cccccccc-ccccccccc-----cEEEEEeCCCcEEEEeCCC--ceEEcccCCCCEEEEEEeCC----EEEEEECCCcEE
Q 000744 992 GTLRKLKK-YSAVVTDIQ-----KALMNLSSVNATELWHCNE--VTELDSSTNGEVLSLIHLKG----RVLSSHSDGTIK 1059 (1306)
Q Consensus 992 ~~l~~l~g-hs~~V~~i~-----~~Lasgs~Dg~I~IWd~~~--~~~i~~~H~~~V~sl~fspd----~LaSgs~Dg~I~ 1059 (1306)
+.++.++. |+++|.-+. .++++|+.|+.|+|||+.. +.+.+.||.+.|+++.|+|+ .|++|+.|++++
T Consensus 95 k~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~ 174 (775)
T KOG0319|consen 95 KLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVR 174 (775)
T ss_pred hHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEE
Confidence 66788888 888876554 8999999999999999986 55667899999999999995 789999999999
Q ss_pred EEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc-eeEEEee--------------------
Q 000744 1060 MWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEE-IHCLQVH-------------------- 1118 (1306)
Q Consensus 1060 vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~-~~~i~~~-------------------- 1118 (1306)
+||+.++. .++.++..|...|++++|++|+..++++|.|..|.|||+.+.+ .+.+..+
T Consensus 175 vwnl~~~~-tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~ 253 (775)
T KOG0319|consen 175 VWNLNDKR-TCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYI 253 (775)
T ss_pred EEEcccCc-hHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEE
Confidence 99999664 4788899999999999999999999999999999999985421 0000000
Q ss_pred -------------------------------------------------------------------cCCCCeEEEEe--
Q 000744 1119 -------------------------------------------------------------------NVKEAVHELTA-- 1129 (1306)
Q Consensus 1119 -------------------------------------------------------------------~~~~~V~sl~~-- 1129 (1306)
+..+.|.++.|
T Consensus 254 ~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG 333 (775)
T KOG0319|consen 254 ITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLG 333 (775)
T ss_pred EEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecC
Confidence 00122223332
Q ss_pred -CCcEEEEEcCCCeEEEEEecC--------------------------------CEEEe----------------ccCCC
Q 000744 1130 -NAEIACFVSPATGVKVYNWSG--------------------------------AIKHI----------------NFNKH 1160 (1306)
Q Consensus 1130 -~~~~v~~s~dg~~I~i~~~~~--------------------------------~~~l~----------------~~~~~ 1160 (1306)
....+++..+...+++++..+ .+.+| +|...
T Consensus 334 ~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~s 413 (775)
T KOG0319|consen 334 PEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNS 413 (775)
T ss_pred CccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccc
Confidence 011122222222233322211 12222 36677
Q ss_pred eEEEEEeC---CEEEEEECCCcEEEEECCCCce---eEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEEC
Q 000744 1161 VKSLVMTG---DKLYCGCSGYSIQEVDLGNLTS---TTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSI 1233 (1306)
Q Consensus 1161 V~sl~~s~---d~L~sgs~Dg~I~iwDl~~~~~---~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~ 1233 (1306)
|.+++++. .+++++|.|++|++|++...+. ...+........|. .|++++++|+..+++++|.|. +.+||++
T Consensus 414 vgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDk-taKiW~l 492 (775)
T KOG0319|consen 414 VGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDK-TAKIWDL 492 (775)
T ss_pred cceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEeccccc-ceeeecc
Confidence 77777763 3688888888888888776221 11222222345677 999999999999999999998 8999999
Q ss_pred CCCceEEEEecCC-CEEEEEEcCc--EEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCCCccC
Q 000744 1234 SSKTAVGSFTTGI-DIQHLAVNSD--FIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1234 ~t~~~l~~l~~~~-~V~sla~spd--~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~~La 1306 (1306)
.......++.+|. +|++|.|+|. .++|+|.|++|+||.+.+..|+++|.+ |...|..+.|-.+|+.|+
T Consensus 493 e~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eG-----H~~aVlra~F~~~~~qli 563 (775)
T KOG0319|consen 493 EQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEG-----HTSAVLRASFIRNGKQLI 563 (775)
T ss_pred cCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecC-----ccceeEeeeeeeCCcEEE
Confidence 9999999999765 5999999997 999999999999999999999999986 889999999999998774
No 15
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.95 E-value=4.2e-26 Score=257.38 Aligned_cols=309 Identities=15% Similarity=0.150 Sum_probs=241.2
Q ss_pred hhhhccccccccccccccccc------cEEEEEeCCCcEEEEeCCC--ceEEcccCCCCEEEEEEeCC--EEEEEECCCc
Q 000744 988 KCIYGTLRKLKKYSAVVTDIQ------KALMNLSSVNATELWHCNE--VTELDSSTNGEVLSLIHLKG--RVLSSHSDGT 1057 (1306)
Q Consensus 988 ~~~~~~l~~l~ghs~~V~~i~------~~Lasgs~Dg~I~IWd~~~--~~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~ 1057 (1306)
.+..+.+..+.||+..|+++. -.++||+.|++|.+|+-.. .......|..-|.|+.|+|| +++|.+.||+
T Consensus 134 ~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgk 213 (603)
T KOG0318|consen 134 WDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGK 213 (603)
T ss_pred ecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCcc
Confidence 445677889999999999887 4699999999999999664 45566789999999999997 9999999999
Q ss_pred EEEEeCCCCccceEEEEc---ccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCC----eEEEEe-
Q 000744 1058 IKMWDSGKRVLRLIQEVR---EHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEA----VHELTA- 1129 (1306)
Q Consensus 1058 I~vWd~~t~~~~~i~~l~---~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~----V~sl~~- 1129 (1306)
|.+||-.++ +.+..+. +|++.|.+++|+||++.++|+|.|.++||||+.+. .+++++..... ...+-|
T Consensus 214 i~iyDGktg--e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~--slv~t~~~~~~v~dqqvG~lWq 289 (603)
T KOG0318|consen 214 IYIYDGKTG--EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTN--SLVSTWPMGSTVEDQQVGCLWQ 289 (603)
T ss_pred EEEEcCCCc--cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeecc--ceEEEeecCCchhceEEEEEEe
Confidence 999999999 8888887 89999999999999999999999999999999998 44444432222 223334
Q ss_pred CCcEEEEEcCCCeEEEEEecC---CEEEeccCCCeEEEEEeCC--EEEEEECCCcEEEEECCCCceeEEe----------
Q 000744 1130 NAEIACFVSPATGVKVYNWSG---AIKHINFNKHVKSLVMTGD--KLYCGCSGYSIQEVDLGNLTSTTFY---------- 1194 (1306)
Q Consensus 1130 ~~~~v~~s~dg~~I~i~~~~~---~~~l~~~~~~V~sl~~s~d--~L~sgs~Dg~I~iwDl~~~~~~~~~---------- 1194 (1306)
++.++.++.+|. |..++.+. ...+.+|++.|+++..+++ +|++|+.||.|.-||..++..-+.+
T Consensus 290 kd~lItVSl~G~-in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~ 368 (603)
T KOG0318|consen 290 KDHLITVSLSGT-INYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKG 368 (603)
T ss_pred CCeEEEEEcCcE-EEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEE
Confidence 777777777776 55555542 2345689999999999875 7999999999999998765322110
Q ss_pred ----------------------------cCcc-----------------------------cccCC--------c-cEEE
Q 000744 1195 ----------------------------AGTK-----------------------------KLLGK--------Q-TIHS 1208 (1306)
Q Consensus 1195 ----------------------------~~~~-----------------------------~l~gh--------~-~I~s 1208 (1306)
..+. -+.++ . ...+
T Consensus 369 ~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~ 448 (603)
T KOG0318|consen 369 MAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSA 448 (603)
T ss_pred EeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccce
Confidence 0000 00101 1 3456
Q ss_pred EEEeCCcEEEEEEecCCCEEEEEECCCCceE---EEEecCCCEEEEEEcCc--EEEEEECCCcEEEEECCCCeEEEEEec
Q 000744 1209 LHMHNGLLFAGGSSVDGTAGKVFSISSKTAV---GSFTTGIDIQHLAVNSD--FIFTATKCGTIEVWLKERVTRVASVKA 1283 (1306)
Q Consensus 1209 l~~s~~~~llas~s~Dg~~I~IWD~~t~~~l---~~l~~~~~V~sla~spd--~Lasgs~Dg~I~IWd~~tg~~l~~l~~ 1283 (1306)
++++|++..++.|+.|+ .++||.+...... ..+.|...|++++|+|| ||++|...+.|-+||+.+.+. ++-..
T Consensus 449 vAv~~~~~~vaVGG~Dg-kvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~-~~~~w 526 (603)
T KOG0318|consen 449 VAVSPDGSEVAVGGQDG-KVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV-KTNRW 526 (603)
T ss_pred EEEcCCCCEEEEecccc-eEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce-eccee
Confidence 77788888888888898 6999999875533 34457888999999999 999999999999999999876 33222
Q ss_pred ccCCCCCCCeEEEEEcCCCCccC
Q 000744 1284 NNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1284 ~~~~~~~~~V~slafSpdg~~La 1306 (1306)
..|+.+|.+++|+|+.+++|
T Consensus 527 ---~FHtakI~~~aWsP~n~~vA 546 (603)
T KOG0318|consen 527 ---AFHTAKINCVAWSPNNKLVA 546 (603)
T ss_pred ---eeeeeeEEEEEeCCCceEEE
Confidence 45889999999999998875
No 16
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=5.3e-27 Score=257.32 Aligned_cols=269 Identities=17% Similarity=0.189 Sum_probs=221.6
Q ss_pred ccccccccccccccccc-----cEEEEEeCCCcEEEEeCCC-----ceEEcccCCCCEEEEEEeCC--EEEEEECCCcEE
Q 000744 992 GTLRKLKKYSAVVTDIQ-----KALMNLSSVNATELWHCNE-----VTELDSSTNGEVLSLIHLKG--RVLSSHSDGTIK 1059 (1306)
Q Consensus 992 ~~l~~l~ghs~~V~~i~-----~~Lasgs~Dg~I~IWd~~~-----~~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~ 1059 (1306)
++.+.+..|++.|+-+. ++|||++.|.+..+|++.. ......+|..+|..|.|||| +|++|+.|..+.
T Consensus 215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~ 294 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLS 294 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhee
Confidence 45677889999998776 9999999999999999753 45667899999999999996 999999999999
Q ss_pred EEeCCCCccceEEEEc-ccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEc
Q 000744 1060 MWDSGKRVLRLIQEVR-EHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVS 1138 (1306)
Q Consensus 1060 vWd~~t~~~~~i~~l~-~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~ 1138 (1306)
+||+.+| .+.+.+. +|...+.+++|.|||..+++|+.|++|..||...+...+.+... ...|.+++ .++
T Consensus 295 lwDv~tg--d~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr-~~~v~dla-------it~ 364 (519)
T KOG0293|consen 295 LWDVDTG--DLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVR-DPKVHDLA-------ITY 364 (519)
T ss_pred eccCCcc--hhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccc-cceeEEEE-------EcC
Confidence 9999999 6666664 35688999999999999999999999999999987544444332 25688888 777
Q ss_pred CCCeEEEEEecCCEEEe-----------ccCCCeEEEEEeCC--EEEEEECCCcEEEEECCCCceeEEecCcccccCCcc
Q 000744 1139 PATGVKVYNWSGAIKHI-----------NFNKHVKSLVMTGD--KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQT 1205 (1306)
Q Consensus 1139 dg~~I~i~~~~~~~~l~-----------~~~~~V~sl~~s~d--~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~ 1205 (1306)
||+.+.+...+..+.++ ....+|++++.+.+ ++++.-.+..|++||+...+.+..|.|++. +|.-
T Consensus 365 Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq--~~fi 442 (519)
T KOG0293|consen 365 DGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQ--GHFI 442 (519)
T ss_pred CCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccc--cceE
Confidence 88777777766655554 34678999999966 577888899999999998888887766542 3323
Q ss_pred EEEEEEe-CCcEEEEEEecCCCEEEEEECCCCceEEEEecCCC-EEEEEEcCc---EEEEEECCCcEEEEECCC
Q 000744 1206 IHSLHMH-NGLLFAGGSSVDGTAGKVFSISSKTAVGSFTTGID-IQHLAVNSD---FIFTATKCGTIEVWLKER 1274 (1306)
Q Consensus 1206 I~sl~~s-~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~~~~-V~sla~spd---~Lasgs~Dg~I~IWd~~t 1274 (1306)
|. -+|. .+..|+++||+|+ .|+||+..+++++..+.+|.. |++|+|+|. ++|+||+||+|+||....
T Consensus 443 Ir-SCFgg~~~~fiaSGSED~-kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 443 IR-SCFGGGNDKFIASGSEDS-KVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred EE-eccCCCCcceEEecCCCc-eEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 44 4454 6668999999999 799999999999999997764 999999997 999999999999998753
No 17
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.95 E-value=9.7e-27 Score=247.45 Aligned_cols=265 Identities=18% Similarity=0.247 Sum_probs=222.2
Q ss_pred hhccccccccccccccccc-----cEEEEEeCCCcEEEEeCCC---ceEEcccCCCCEEEEEEeCC--EEEEEECCCcEE
Q 000744 990 IYGTLRKLKKYSAVVTDIQ-----KALMNLSSVNATELWHCNE---VTELDSSTNGEVLSLIHLKG--RVLSSHSDGTIK 1059 (1306)
Q Consensus 990 ~~~~l~~l~ghs~~V~~i~-----~~Lasgs~Dg~I~IWd~~~---~~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~ 1059 (1306)
+..++..+.||.+.|..+. .+||||+.|..|.+|+..+ -.-...+|++.|..+.|.+| .+++++.|.+|+
T Consensus 36 l~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 36 LQAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVR 115 (338)
T ss_pred ccchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEE
Confidence 3456778899999998876 8999999999999999653 34455799999999999986 999999999999
Q ss_pred EEeCCCCccceEEEEcccCccEEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEc
Q 000744 1060 MWDSGKRVLRLIQEVREHTRAVTCLYVPSSG-DKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVS 1138 (1306)
Q Consensus 1060 vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg-~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~ 1138 (1306)
.||+++| ++++.+++|.+-|+++.-+.-| .++.||+.||++++||+++. .+++.+..+..++++. |..
T Consensus 116 ~wD~~tG--~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k--~~~~t~~~kyqltAv~-------f~d 184 (338)
T KOG0265|consen 116 GWDAETG--KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK--EAIKTFENKYQLTAVG-------FKD 184 (338)
T ss_pred EEecccc--eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeeccc--chhhccccceeEEEEE-------ecc
Confidence 9999999 9999999999999999854434 57789999999999999986 5555555445555555 333
Q ss_pred CCCeEEEEEecCCEEEeccCCCeEEEEEeCCEEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeCCcEE
Q 000744 1139 PATGVKVYNWSGAIKHINFNKHVKSLVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLF 1217 (1306)
Q Consensus 1139 dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~l 1217 (1306)
++ +.+.+|+-|+.|++||++.+....+.. ||. +|+.+..++++.+
T Consensus 185 ~s----------------------------~qv~sggIdn~ikvWd~r~~d~~~~ls------Gh~DtIt~lsls~~gs~ 230 (338)
T KOG0265|consen 185 TS----------------------------DQVISGGIDNDIKVWDLRKNDGLYTLS------GHADTITGLSLSRYGSF 230 (338)
T ss_pred cc----------------------------cceeeccccCceeeeccccCcceEEee------cccCceeeEEeccCCCc
Confidence 33 368999999999999999999888544 676 9999999999999
Q ss_pred EEEEecCCCEEEEEECCCC----ceEEEEecCC-----CEEEEEEcCc--EEEEEECCCcEEEEECCCCeEEEEEecccC
Q 000744 1218 AGGSSVDGTAGKVFSISSK----TAVGSFTTGI-----DIQHLAVNSD--FIFTATKCGTIEVWLKERVTRVASVKANNS 1286 (1306)
Q Consensus 1218 las~s~Dg~~I~IWD~~t~----~~l~~l~~~~-----~V~sla~spd--~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~ 1286 (1306)
+.+.+.|. ++++||++-. .++..+.++. ....++|+|+ ++-.|+.|..+++||..+...+..+++
T Consensus 231 llsnsMd~-tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpG--- 306 (338)
T KOG0265|consen 231 LLSNSMDN-TVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPG--- 306 (338)
T ss_pred cccccccc-eEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCC---
Confidence 99999999 8999999753 4577777432 3567789998 999999999999999999889999986
Q ss_pred CCCCCCeEEEEEcCCCCcc
Q 000744 1287 GGGHAKITCLGTGVDGHPY 1305 (1306)
Q Consensus 1287 ~~~~~~V~slafSpdg~~L 1305 (1306)
|.+.|.+++|+|...+|
T Consensus 307 --h~gsvn~~~Fhp~e~ii 323 (338)
T KOG0265|consen 307 --HYGSVNEVDFHPTEPII 323 (338)
T ss_pred --cceeEEEeeecCCCcEE
Confidence 77899999999987764
No 18
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.95 E-value=6e-28 Score=259.04 Aligned_cols=245 Identities=18% Similarity=0.245 Sum_probs=207.4
Q ss_pred CCCCEEEEEEeCCEEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeE
Q 000744 1035 TNGEVLSLIHLKGRVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHC 1114 (1306)
Q Consensus 1035 H~~~V~sl~fspd~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~ 1114 (1306)
....|.|+.+..+.+++|..|++|+|||.++. .+...+.||++.|.|+.| +.+.++|||.|.+|+|||.+++ ++
T Consensus 196 ~skgVYClQYDD~kiVSGlrDnTikiWD~n~~--~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tg--e~ 269 (499)
T KOG0281|consen 196 NSKGVYCLQYDDEKIVSGLRDNTIKIWDKNSL--ECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTG--EP 269 (499)
T ss_pred cCCceEEEEecchhhhcccccCceEEeccccH--HHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCC--ch
Confidence 35679999999999999999999999999998 899999999999999998 4669999999999999999998 45
Q ss_pred EEee-cCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCE------EEeccCCCeEEEEEeCCEEEEEECCCcEEEEECCC
Q 000744 1115 LQVH-NVKEAVHELTANAEIACFVSPATGVKVYNWSGAI------KHINFNKHVKSLVMTGDKLYCGCSGYSIQEVDLGN 1187 (1306)
Q Consensus 1115 i~~~-~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~------~l~~~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~ 1187 (1306)
++++ .|.+.|..+.|++.++..++.+..+.+|+..... .+.+|...|+.+.|+..++++++.|.+|++|++.+
T Consensus 270 l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st 349 (499)
T KOG0281|consen 270 LNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTST 349 (499)
T ss_pred hhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccc
Confidence 5543 4668999999966666666666679999998542 34689999999999999999999999999999999
Q ss_pred CceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEecCCC-EEEEEEcCcEEEEEECCC
Q 000744 1188 LTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFTTGID-IQHLAVNSDFIFTATKCG 1265 (1306)
Q Consensus 1188 ~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~~~~-V~sla~spd~Lasgs~Dg 1265 (1306)
+..+.++. ||. .|-|+.+ .+.++++||.|. +|++||+..|.+++.+.+|.. |.++.|+...|++|+.||
T Consensus 350 ~efvRtl~------gHkRGIAClQY--r~rlvVSGSSDn-tIRlwdi~~G~cLRvLeGHEeLvRciRFd~krIVSGaYDG 420 (499)
T KOG0281|consen 350 CEFVRTLN------GHKRGIACLQY--RDRLVVSGSSDN-TIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDG 420 (499)
T ss_pred eeeehhhh------cccccceehhc--cCeEEEecCCCc-eEEEEeccccHHHHHHhchHHhhhheeecCceeeeccccc
Confidence 99998544 666 7777665 456777888898 999999999999999998766 999999999999999999
Q ss_pred cEEEEECCCCe---------EEEEEecccCCCCCCCeEEEEEc
Q 000744 1266 TIEVWLKERVT---------RVASVKANNSGGGHAKITCLGTG 1299 (1306)
Q Consensus 1266 ~I~IWd~~tg~---------~l~~l~~~~~~~~~~~V~slafS 1299 (1306)
+|+|||+.++. |+.++. .|.+.|..+.|+
T Consensus 421 kikvWdl~aaldpra~~~~~Cl~~lv-----~hsgRVFrLQFD 458 (499)
T KOG0281|consen 421 KIKVWDLQAALDPRAPASTLCLRTLV-----EHSGRVFRLQFD 458 (499)
T ss_pred eEEEEecccccCCcccccchHHHhhh-----hccceeEEEeec
Confidence 99999998753 223332 255788888874
No 19
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.95 E-value=8.8e-27 Score=275.76 Aligned_cols=220 Identities=15% Similarity=0.239 Sum_probs=193.1
Q ss_pred ccEEEEEeCCCcEEEEeCCC---------------------------------ceEEcccCCCCEEEEEEeCC--EEEEE
Q 000744 1008 QKALMNLSSVNATELWHCNE---------------------------------VTELDSSTNGEVLSLIHLKG--RVLSS 1052 (1306)
Q Consensus 1008 ~~~Lasgs~Dg~I~IWd~~~---------------------------------~~~i~~~H~~~V~sl~fspd--~LaSg 1052 (1306)
..+||.|-.|..|++|.+.. ......+|.++|....|+|+ +|+++
T Consensus 390 ssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlSc 469 (707)
T KOG0263|consen 390 SSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSC 469 (707)
T ss_pred cchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecccccceeec
Confidence 38899999999999998751 12335799999999999996 99999
Q ss_pred ECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCc
Q 000744 1053 HSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAE 1132 (1306)
Q Consensus 1053 s~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~ 1132 (1306)
|.|++|++|.+.+. .++-.++||..+|+++.|+|-|-+|+|+|.|++-++|...... +.+.+
T Consensus 470 SED~svRLWsl~t~--s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~--PlRif-------------- 531 (707)
T KOG0263|consen 470 SEDSSVRLWSLDTW--SCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK--PLRIF-------------- 531 (707)
T ss_pred cCCcceeeeecccc--eeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC--chhhh--------------
Confidence 99999999999998 8999999999999999999999999999999999999987642 22111
Q ss_pred EEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCC--EEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEE
Q 000744 1133 IACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGD--KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSL 1209 (1306)
Q Consensus 1133 ~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d--~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl 1209 (1306)
.+|.+.|.|+.|+|+ ++++||.|.++++||+.+|..+++|. ||. +|.++
T Consensus 532 ----------------------aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~------GH~~~V~al 583 (707)
T KOG0263|consen 532 ----------------------AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT------GHKGPVTAL 583 (707)
T ss_pred ----------------------cccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEec------CCCCceEEE
Confidence 135566777777766 89999999999999999999999886 455 99999
Q ss_pred EEeCCcEEEEEEecCCCEEEEEECCCCceEEEEecC-CCEEEEEEcCc--EEEEEECCCcEEEEECCC
Q 000744 1210 HMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFTTG-IDIQHLAVNSD--FIFTATKCGTIEVWLKER 1274 (1306)
Q Consensus 1210 ~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~~-~~V~sla~spd--~Lasgs~Dg~I~IWd~~t 1274 (1306)
+|+|++.++++|+.|+ .|++||+.++..+..+.+| +.|+++.|+.+ .|++||.|++|++||+.+
T Consensus 584 ~~Sp~Gr~LaSg~ed~-~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 584 AFSPCGRYLASGDEDG-LIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred EEcCCCceEeecccCC-cEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 9999999999999998 8999999999999999854 55999999998 999999999999999864
No 20
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.9e-26 Score=263.74 Aligned_cols=260 Identities=13% Similarity=0.244 Sum_probs=216.8
Q ss_pred cccccccccccccc-----cEEEEEeCCCcEEEEeCCCceEEccc--CCCCEEEEEEeC--CEEEEEECCCcEEEEeCCC
Q 000744 995 RKLKKYSAVVTDIQ-----KALMNLSSVNATELWHCNEVTELDSS--TNGEVLSLIHLK--GRVLSSHSDGTIKMWDSGK 1065 (1306)
Q Consensus 995 ~~l~ghs~~V~~i~-----~~Lasgs~Dg~I~IWd~~~~~~i~~~--H~~~V~sl~fsp--d~LaSgs~Dg~I~vWd~~t 1065 (1306)
+++..|+..|.++. ..+.++-..|.|.|||.++...+... .+-+|.+..|-. +++++|+.|..|+||+.+|
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 45666788887776 67888888899999999875544433 477888888876 6999999999999999999
Q ss_pred CccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEE
Q 000744 1066 RVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKV 1145 (1306)
Q Consensus 1066 ~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i 1145 (1306)
+ +.+++|..|.+.|.|++.+|...+++|+|+|-+||+||...+ +.|.+.+.
T Consensus 87 ~--ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~-wa~~qtfe-------------------------- 137 (794)
T KOG0276|consen 87 G--EKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE-WACEQTFE-------------------------- 137 (794)
T ss_pred c--eeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCc-eeeeeEEc--------------------------
Confidence 9 899999999999999999999999999999999999999875 55555543
Q ss_pred EEecCCEEEeccCCCeEEEEEeC---CEEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEe--CCcEEEE
Q 000744 1146 YNWSGAIKHINFNKHVKSLVMTG---DKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMH--NGLLFAG 1219 (1306)
Q Consensus 1146 ~~~~~~~~l~~~~~~V~sl~~s~---d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s--~~~~lla 1219 (1306)
+|...|.+++|+| +.++++|-|++|++|.+.+..+..++ .||. .|+++.+- ++..+++
T Consensus 138 ----------GH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl------~gHekGVN~Vdyy~~gdkpylI 201 (794)
T KOG0276|consen 138 ----------GHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTL------EGHEKGVNCVDYYTGGDKPYLI 201 (794)
T ss_pred ----------CcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceee------eccccCcceEEeccCCCcceEE
Confidence 2555566666664 37999999999999999988887754 4666 99999996 5567888
Q ss_pred EEecCCCEEEEEECCCCceEEEEecC-CCEEEEEEcCc--EEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEE
Q 000744 1220 GSSVDGTAGKVFSISSKTAVGSFTTG-IDIQHLAVNSD--FIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCL 1296 (1306)
Q Consensus 1220 s~s~Dg~~I~IWD~~t~~~l~~l~~~-~~V~sla~spd--~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~sl 1296 (1306)
+|+.|. +|+|||.++.+|+.++.+| ..|..+.|+|. +++|||+||+++||+..|-+...++.- +-.+||++
T Consensus 202 sgaDD~-tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~-----gleRvW~I 275 (794)
T KOG0276|consen 202 SGADDL-TIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNY-----GLERVWCI 275 (794)
T ss_pred ecCCCc-eEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhc-----CCceEEEE
Confidence 887555 9999999999999999965 56999999999 999999999999999999877777753 44689999
Q ss_pred EEcCCCCcc
Q 000744 1297 GTGVDGHPY 1305 (1306)
Q Consensus 1297 afSpdg~~L 1305 (1306)
+-.+++..+
T Consensus 276 ~~~k~~~~i 284 (794)
T KOG0276|consen 276 AAHKGDGKI 284 (794)
T ss_pred eecCCCCeE
Confidence 877766543
No 21
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=7.2e-25 Score=230.27 Aligned_cols=268 Identities=18% Similarity=0.248 Sum_probs=215.8
Q ss_pred ccccccccccccccccc------cEEEEEeCCCcEEEEeCCC-----ce-EEcccCCCCEEEEEEeCC--EEEEEECCCc
Q 000744 992 GTLRKLKKYSAVVTDIQ------KALMNLSSVNATELWHCNE-----VT-ELDSSTNGEVLSLIHLKG--RVLSSHSDGT 1057 (1306)
Q Consensus 992 ~~l~~l~ghs~~V~~i~------~~Lasgs~Dg~I~IWd~~~-----~~-~i~~~H~~~V~sl~fspd--~LaSgs~Dg~ 1057 (1306)
..+++++||.+.++.+. .+|||||.|+.|++|+... +. .+..+|+..|.+++|+|. +|++||.|.+
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t 84 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT 84 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence 34678999999888776 3899999999999999883 22 234589999999999984 9999999999
Q ss_pred EEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc-eeEEEeec-CCCCeEEEEeCC---c
Q 000744 1058 IKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEE-IHCLQVHN-VKEAVHELTANA---E 1132 (1306)
Q Consensus 1058 I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~-~~~i~~~~-~~~~V~sl~~~~---~ 1132 (1306)
+.||.-..+.++++.++.||...|.|++|+++|++|+++|.|++|=||.+..+. ..|...++ |...|..+.|++ .
T Consensus 85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dl 164 (312)
T KOG0645|consen 85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDL 164 (312)
T ss_pred EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcce
Confidence 999999999999999999999999999999999999999999999999998554 77887765 888999999944 4
Q ss_pred EEEEEcCCCeEEEEEec-CC-----EEEeccCCCeEEEEEeC--CEEEEEECCCcEEEEECCCCceeEEecCcccccCCc
Q 000744 1133 IACFVSPATGVKVYNWS-GA-----IKHINFNKHVKSLVMTG--DKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ 1204 (1306)
Q Consensus 1133 ~v~~s~dg~~I~i~~~~-~~-----~~l~~~~~~V~sl~~s~--d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~ 1204 (1306)
++..+.|++ |++|... +. ..+-+|...|.+++|++ +.+++++.|++++||-..+.-.. .|.
T Consensus 165 L~S~SYDnT-Ik~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~----------~~s 233 (312)
T KOG0645|consen 165 LFSCSYDNT-IKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSG----------MHS 233 (312)
T ss_pred eEEeccCCe-EEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcch----------hcc
Confidence 455555554 8888766 32 45567888999999996 47999999999999986632211 233
Q ss_pred -cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCc------eEEEE--ecCCCEEEEEEcCc---EEEEEECCCcEEEEEC
Q 000744 1205 -TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKT------AVGSF--TTGIDIQHLAVNSD---FIFTATKCGTIEVWLK 1272 (1306)
Q Consensus 1205 -~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~------~l~~l--~~~~~V~sla~spd---~Lasgs~Dg~I~IWd~ 1272 (1306)
+++.+.|. ++.++.+ +.|+ .|++|.-.... .+... .|...|+++.|+|. .|++|++||.|++|.+
T Consensus 234 r~~Y~v~W~-~~~IaS~-ggD~-~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 234 RALYDVPWD-NGVIASG-GGDD-AIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred cceEeeeec-ccceEec-cCCC-EEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEe
Confidence 88889998 5555544 4587 79999766431 12211 25567999999994 9999999999999987
Q ss_pred C
Q 000744 1273 E 1273 (1306)
Q Consensus 1273 ~ 1273 (1306)
.
T Consensus 311 ~ 311 (312)
T KOG0645|consen 311 E 311 (312)
T ss_pred c
Confidence 5
No 22
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.94 E-value=1.6e-24 Score=244.73 Aligned_cols=304 Identities=14% Similarity=0.226 Sum_probs=230.7
Q ss_pred hhccccccccccccccccc-----cEEEEEeCCCcEEEEeCCCceEE-----cccCCCCEEEEEEeCC--EEEEEECCCc
Q 000744 990 IYGTLRKLKKYSAVVTDIQ-----KALMNLSSVNATELWHCNEVTEL-----DSSTNGEVLSLIHLKG--RVLSSHSDGT 1057 (1306)
Q Consensus 990 ~~~~l~~l~ghs~~V~~i~-----~~Lasgs~Dg~I~IWd~~~~~~i-----~~~H~~~V~sl~fspd--~LaSgs~Dg~ 1057 (1306)
.++.-.+++.|+..|+++. .+++|.+.||+|.+||-++...+ ..+|++.|.+++|+|| .++|+|.|.+
T Consensus 179 PFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt 258 (603)
T KOG0318|consen 179 PFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKT 258 (603)
T ss_pred CeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCce
Confidence 3455677888999999987 89999999999999998864333 2489999999999997 9999999999
Q ss_pred EEEEeCCCCcc-----------------------------------------ceEEEEcccCccEEEEEEcCCCCEEEEE
Q 000744 1058 IKMWDSGKRVL-----------------------------------------RLIQEVREHTRAVTCLYVPSSGDKLYSG 1096 (1306)
Q Consensus 1058 I~vWd~~t~~~-----------------------------------------~~i~~l~~H~~~V~sl~fspdg~~L~Sg 1096 (1306)
++|||+.++.. .++.++.||...|+++..++++.+|+||
T Consensus 259 ~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sg 338 (603)
T KOG0318|consen 259 IKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSG 338 (603)
T ss_pred EEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEee
Confidence 99999977621 2233557999999999999999999999
Q ss_pred eCCCcEEEEEcCCCceeEEEeecCCCCeEEEEe--CCcEEEEEcCCCeEEEEEec-------------------------
Q 000744 1097 SLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTA--NAEIACFVSPATGVKVYNWS------------------------- 1149 (1306)
Q Consensus 1097 s~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~--~~~~v~~s~dg~~I~i~~~~------------------------- 1149 (1306)
+.||.|.-||..++....+....|...|.+++. .+.++..+-|+. +++.+..
T Consensus 339 syDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~-l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~ 417 (603)
T KOG0318|consen 339 SYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDT-LRVISLKDNGYTKSEVVKLGSQPKGLAVLSDG 417 (603)
T ss_pred ccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCe-EEEEecccCcccccceeecCCCceeEEEcCCC
Confidence 999999999999875333333345566666665 244444444443 3333221
Q ss_pred ---------CCEEEec--------cCCCeEEEEEeCC--EEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEE
Q 000744 1150 ---------GAIKHIN--------FNKHVKSLVMTGD--KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSL 1209 (1306)
Q Consensus 1150 ---------~~~~l~~--------~~~~V~sl~~s~d--~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl 1209 (1306)
+...+.+ ..-...+++++|+ .+++|+.||.+++|.+..+.....- .+..|. +|+++
T Consensus 418 ~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~----~~~~h~a~iT~v 493 (603)
T KOG0318|consen 418 GTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEA----KLLEHRAAITDV 493 (603)
T ss_pred CEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCccccee----eeecccCCceEE
Confidence 1111111 1234567788866 6999999999999999886643321 244667 99999
Q ss_pred EEeCCcEEEEEEecCCCEEEEEECCCCceEE-EEe-cCCCEEEEEEcCc--EEEEEECCCcEEEEECCCCeEEEEEeccc
Q 000744 1210 HMHNGLLFAGGSSVDGTAGKVFSISSKTAVG-SFT-TGIDIQHLAVNSD--FIFTATKCGTIEVWLKERVTRVASVKANN 1285 (1306)
Q Consensus 1210 ~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~-~l~-~~~~V~sla~spd--~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~ 1285 (1306)
+++|++.|++++...+ .+.+||+.+.+... .+. |+..|.+++|+|+ +++|||-|..|.||+++.....-.++
T Consensus 494 aySpd~~yla~~Da~r-kvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ik--- 569 (603)
T KOG0318|consen 494 AYSPDGAYLAAGDASR-KVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIK--- 569 (603)
T ss_pred EECCCCcEEEEeccCC-cEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEec---
Confidence 9999999999997777 79999999877622 223 7788999999999 99999999999999998765444444
Q ss_pred CCCCCCCeEEEEEcCCCC
Q 000744 1286 SGGGHAKITCLGTGVDGH 1303 (1306)
Q Consensus 1286 ~~~~~~~V~slafSpdg~ 1303 (1306)
+.|...|+.+.|-.+..
T Consensus 570 -nAH~~gVn~v~wlde~t 586 (603)
T KOG0318|consen 570 -NAHLGGVNSVAWLDEST 586 (603)
T ss_pred -cccccCceeEEEecCce
Confidence 45777799999976544
No 23
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=8.5e-26 Score=264.06 Aligned_cols=280 Identities=14% Similarity=0.207 Sum_probs=228.8
Q ss_pred hhhhhhhccccccccccccccccc------cEEEEEeCCCcEEEEeCCCc-eEEcccCCCCEEEEE-EeCC-EEEEEECC
Q 000744 985 KYAKCIYGTLRKLKKYSAVVTDIQ------KALMNLSSVNATELWHCNEV-TELDSSTNGEVLSLI-HLKG-RVLSSHSD 1055 (1306)
Q Consensus 985 ~~~~~~~~~l~~l~ghs~~V~~i~------~~Lasgs~Dg~I~IWd~~~~-~~i~~~H~~~V~sl~-fspd-~LaSgs~D 1055 (1306)
-|..+.++..+.+-|..+.|.++. ++||.++..+.+|+|+..+. -.+..+|+..|.++. |+.+ +|+|||.|
T Consensus 307 l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD 386 (775)
T KOG0319|consen 307 LYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKD 386 (775)
T ss_pred EEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCC
Confidence 344455567788888888888877 78999999999999998763 347889999999998 6665 99999999
Q ss_pred CcEEEEeCCCC--ccceEEEEcccCccEEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCc
Q 000744 1056 GTIKMWDSGKR--VLRLIQEVREHTRAVTCLYVPSSG-DKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAE 1132 (1306)
Q Consensus 1056 g~I~vWd~~t~--~~~~i~~l~~H~~~V~sl~fspdg-~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~ 1132 (1306)
.++++|.++++ ...++....+|++.|.+++++..+ .+|+++|.|+++++|++...+.. .. .+.
T Consensus 387 ~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~--------~~--~~~---- 452 (775)
T KOG0319|consen 387 KSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKET--------AF--PIV---- 452 (775)
T ss_pred ceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccc--------cc--cce----
Confidence 99999988443 224666778999999999997744 69999999999999999873200 00 000
Q ss_pred EEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCC--EEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEE
Q 000744 1133 IACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGD--KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSL 1209 (1306)
Q Consensus 1133 ~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d--~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl 1209 (1306)
+.. ......|.+.|+|++++|+ .++|||.|.+.++|++.......++. ||. .|+++
T Consensus 453 ---~~~------------~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLs------GH~RGvw~V 511 (775)
T KOG0319|consen 453 ---LTC------------RYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLS------GHTRGVWCV 511 (775)
T ss_pred ---ehh------------hHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEee------CCccceEEE
Confidence 000 0001137788888988876 68999999999999999888887655 566 99999
Q ss_pred EEeCCcEEEEEEecCCCEEEEEECCCCceEEEEecC-CCEEEEEEcCc--EEEEEECCCcEEEEECCCCeEEEEEecccC
Q 000744 1210 HMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFTTG-IDIQHLAVNSD--FIFTATKCGTIEVWLKERVTRVASVKANNS 1286 (1306)
Q Consensus 1210 ~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~~-~~V~sla~spd--~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~ 1286 (1306)
.|++...+++++|.|. +|+||.+.++.|+++|.+| ..|..+.|-.+ .|++++.||-|++|++.+++|+.++..
T Consensus 512 ~Fs~~dq~laT~SgD~-TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~--- 587 (775)
T KOG0319|consen 512 SFSKNDQLLATCSGDK-TVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDA--- 587 (775)
T ss_pred EeccccceeEeccCCc-eEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhh---
Confidence 9999988888888898 9999999999999999955 56999999665 999999999999999999999999976
Q ss_pred CCCCCCeEEEEEcCCCCcc
Q 000744 1287 GGGHAKITCLGTGVDGHPY 1305 (1306)
Q Consensus 1287 ~~~~~~V~slafSpdg~~L 1305 (1306)
|.++||+++-+|++.++
T Consensus 588 --H~DrvWaL~~~~~~~~~ 604 (775)
T KOG0319|consen 588 --HNDRVWALSVSPLLDMF 604 (775)
T ss_pred --ccceeEEEeecCcccee
Confidence 88999999999988754
No 24
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.8e-25 Score=242.97 Aligned_cols=268 Identities=16% Similarity=0.227 Sum_probs=225.0
Q ss_pred EEeCC-CceEEcccCCCCEEEEEEeCC--EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeC
Q 000744 1022 LWHCN-EVTELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSL 1098 (1306)
Q Consensus 1022 IWd~~-~~~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~ 1098 (1306)
.|-.+ ....-..+|..+|+.+-|+|+ ..++++.|++|++||..++ ++...++||.+.|.+|.|+..|+++++++.
T Consensus 93 ~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg--~~e~~LrGHt~sv~di~~~a~Gk~l~tcSs 170 (406)
T KOG0295|consen 93 LWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETG--ELERSLRGHTDSVFDISFDASGKYLATCSS 170 (406)
T ss_pred hcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccch--hhhhhhhccccceeEEEEecCccEEEecCC
Confidence 35554 345556789999999999997 7788889999999999999 789999999999999999999999999999
Q ss_pred CCcEEEEEcCCCceeEEEe-ecCCCCeEEEEe---CCcEEEEEcCCCeEEEEEecCCEE---EeccCCCeEEEEEeCC--
Q 000744 1099 DKTIRVWSIKPEEIHCLQV-HNVKEAVHELTA---NAEIACFVSPATGVKVYNWSGAIK---HINFNKHVKSLVMTGD-- 1169 (1306)
Q Consensus 1099 DgtI~VWdi~~~~~~~i~~-~~~~~~V~sl~~---~~~~v~~s~dg~~I~i~~~~~~~~---l~~~~~~V~sl~~s~d-- 1169 (1306)
|=.+++||..+. .+|++. +.|...|.++.| ++.+++.+.|.. |+.|+.+.... +.+|..+|..+..+.|
T Consensus 171 Dl~~~LWd~~~~-~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~t-ik~We~~tg~cv~t~~~h~ewvr~v~v~~DGt 248 (406)
T KOG0295|consen 171 DLSAKLWDFDTF-FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNT-IKAWECDTGYCVKTFPGHSEWVRMVRVNQDGT 248 (406)
T ss_pred ccchhheeHHHH-HHHHHHhcCcccceeeEEEEecCCeeeecccccc-eeEEecccceeEEeccCchHhEEEEEecCCee
Confidence 999999999874 233333 456678999988 556666666655 89999996543 3478899999999977
Q ss_pred EEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeC---------------CcEEEEEEecCCCEEEEEEC
Q 000744 1170 KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHN---------------GLLFAGGSSVDGTAGKVFSI 1233 (1306)
Q Consensus 1170 ~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~---------------~~~llas~s~Dg~~I~IWD~ 1233 (1306)
.+++++.|.++++|-+.++++... +.+|. +|-+++|-| ++.++++++.|+ +|++||+
T Consensus 249 i~As~s~dqtl~vW~~~t~~~k~~------lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDk-tIk~wdv 321 (406)
T KOG0295|consen 249 IIASCSNDQTLRVWVVATKQCKAE------LREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDK-TIKIWDV 321 (406)
T ss_pred EEEecCCCceEEEEEeccchhhhh------hhccccceEEEEecccccCcchhhccCCCCCccEEEeecccc-eEEEEec
Confidence 478899999999999999977664 44677 888888832 346899999998 9999999
Q ss_pred CCCceEEEEecC-CCEEEEEEcCc--EEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCCCcc
Q 000744 1234 SSKTAVGSFTTG-IDIQHLAVNSD--FIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDGHPY 1305 (1306)
Q Consensus 1234 ~t~~~l~~l~~~-~~V~sla~spd--~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~~L 1305 (1306)
.++.++.++.+| .+|.+++|+|. ||+++.+|++++|||++++++.+++.. |..-|+++.|+.+--++
T Consensus 322 ~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~a-----h~hfvt~lDfh~~~p~V 391 (406)
T KOG0295|consen 322 STGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEA-----HEHFVTSLDFHKTAPYV 391 (406)
T ss_pred cCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCC-----CcceeEEEecCCCCceE
Confidence 999999999965 56999999987 999999999999999999999999986 66789999999876554
No 25
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.94 E-value=5.3e-25 Score=240.44 Aligned_cols=279 Identities=14% Similarity=0.211 Sum_probs=215.4
Q ss_pred cccccccccc---cEEEEEeCCCcEEEEeCCC-ceEEcccCCCCEEEEEEeC-C----EEEEEECCCcEEEEeCCCCc--
Q 000744 999 KYSAVVTDIQ---KALMNLSSVNATELWHCNE-VTELDSSTNGEVLSLIHLK-G----RVLSSHSDGTIKMWDSGKRV-- 1067 (1306)
Q Consensus 999 ghs~~V~~i~---~~Lasgs~Dg~I~IWd~~~-~~~i~~~H~~~V~sl~fsp-d----~LaSgs~Dg~I~vWd~~t~~-- 1067 (1306)
.|.+.|+++. +.+.||+.||++++||..+ ...+..+|.++|.+++|.. + .++++|.|.++++|.++.+.
T Consensus 103 ~hdDWVSsv~~~~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~ 182 (423)
T KOG0313|consen 103 LHDDWVSSVKGASKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK 182 (423)
T ss_pred cchhhhhhhcccCceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh
Confidence 3677787777 8999999999999999985 6777899999999998863 2 69999999999999998663
Q ss_pred cceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEE
Q 000744 1068 LRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYN 1147 (1306)
Q Consensus 1068 ~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~ 1147 (1306)
.+++...+||...|-+|...++|..++|||.|.+|+||+..+.....+.....+..-... .-+.+. .
T Consensus 183 ~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~--------~~~~~~-----~ 249 (423)
T KOG0313|consen 183 VKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQK--------REKEGG-----T 249 (423)
T ss_pred hhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhh--------hhhccc-----c
Confidence 234445569999999999999999999999999999999443221111111100000000 000000 0
Q ss_pred ecCCEEEeccCCCeEEEEEeCC-EEEEEECCCcEEEEECCCCceeEEecCcccccCCccEEEEEEeCCcEEEEEEecCCC
Q 000744 1148 WSGAIKHINFNKHVKSLVMTGD-KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLLFAGGSSVDGT 1226 (1306)
Q Consensus 1148 ~~~~~~l~~~~~~V~sl~~s~d-~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~s~Dg~ 1226 (1306)
....+.+.+|..+|.++.|++. .+++++.|.+|+.||+.++.......+. ..++++..++...++++|+.|.
T Consensus 250 r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~------ksl~~i~~~~~~~Ll~~gssdr- 322 (423)
T KOG0313|consen 250 RTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTN------KSLNCISYSPLSKLLASGSSDR- 322 (423)
T ss_pred cCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecC------cceeEeecccccceeeecCCCC-
Confidence 0022345579999999999954 7999999999999999999887754433 3889999999888888888898
Q ss_pred EEEEEECCCCc---eEEEEe-cCCCEEEEEEcCc---EEEEEECCCcEEEEECCCCe-EEEEEecccCCCCCCCeEEEEE
Q 000744 1227 AGKVFSISSKT---AVGSFT-TGIDIQHLAVNSD---FIFTATKCGTIEVWLKERVT-RVASVKANNSGGGHAKITCLGT 1298 (1306)
Q Consensus 1227 ~I~IWD~~t~~---~l~~l~-~~~~V~sla~spd---~Lasgs~Dg~I~IWd~~tg~-~l~~l~~~~~~~~~~~V~slaf 1298 (1306)
.|++||.+++. ...+|. |...|.++.|+|. .+++|+.||++++||+++.+ ++..+.+ |.+.|.++.|
T Consensus 323 ~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~-----h~DKvl~vdW 397 (423)
T KOG0313|consen 323 HIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAG-----HNDKVLSVDW 397 (423)
T ss_pred ceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeecc-----CCceEEEEec
Confidence 89999998863 345555 4556999999997 99999999999999999877 8899875 7899999999
Q ss_pred cCCC
Q 000744 1299 GVDG 1302 (1306)
Q Consensus 1299 Spdg 1302 (1306)
+..+
T Consensus 398 ~~~~ 401 (423)
T KOG0313|consen 398 NEGG 401 (423)
T ss_pred cCCc
Confidence 8653
No 26
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.94 E-value=1.4e-24 Score=236.24 Aligned_cols=298 Identities=13% Similarity=0.152 Sum_probs=242.4
Q ss_pred ccccccccccccccccc-----cEEEEEeCCCcEEEEeCCC--ceEEcccCCCCEEEEEEeCC--EEEEEECCCcEEEEe
Q 000744 992 GTLRKLKKYSAVVTDIQ-----KALMNLSSVNATELWHCNE--VTELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWD 1062 (1306)
Q Consensus 992 ~~l~~l~ghs~~V~~i~-----~~Lasgs~Dg~I~IWd~~~--~~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd 1062 (1306)
..+.+|.+|++.|+++. .+++||+.|..-.+|+..+ ......+|+..|+|+.|+-+ +|+||+.+|.|+||+
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence 45788999999998877 8999999999999999986 34556899999999999975 999999999999999
Q ss_pred CCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc-eeEEEeecCCCCeEEEEeCCcEEEEEcCCC
Q 000744 1063 SGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEE-IHCLQVHNVKEAVHELTANAEIACFVSPAT 1141 (1306)
Q Consensus 1063 ~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~-~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~ 1141 (1306)
..++ .....+..--..|.=+.|+|.+..|+.|+.||.+-+|.+.++. .+.+. .|..++++=. +.|+|+
T Consensus 135 ~stg--~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~--Gh~~~ct~G~-------f~pdGK 203 (399)
T KOG0296|consen 135 VSTG--GEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMS--GHNSPCTCGE-------FIPDGK 203 (399)
T ss_pred cccC--ceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEec--CCCCCccccc-------ccCCCc
Confidence 9998 6666665556678889999999999999999999999999852 33333 3667888777 555566
Q ss_pred eEEEEEecCCEEEecc-------------CCCeEEEEEe--CCEEEEEECCCcEEEEECCCCceeEEecC-cccc-cCCc
Q 000744 1142 GVKVYNWSGAIKHINF-------------NKHVKSLVMT--GDKLYCGCSGYSIQEVDLGNLTSTTFYAG-TKKL-LGKQ 1204 (1306)
Q Consensus 1142 ~I~i~~~~~~~~l~~~-------------~~~V~sl~~s--~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~-~~~l-~gh~ 1204 (1306)
.+.....++.+++|+. .....++.++ +..++.|+.++.+++-+..+|+.+..+.+ ...+ .++.
T Consensus 204 r~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e 283 (399)
T KOG0296|consen 204 RILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQE 283 (399)
T ss_pred eEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccch
Confidence 5555555555555542 1234555555 44689999999999999999998887663 1111 1232
Q ss_pred ----cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEecCCCEEEEEEcCc-EEEEEECCCcEEEEECCCCeEEE
Q 000744 1205 ----TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFTTGIDIQHLAVNSD-FIFTATKCGTIEVWLKERVTRVA 1279 (1306)
Q Consensus 1205 ----~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~~~~V~sla~spd-~Lasgs~Dg~I~IWd~~tg~~l~ 1279 (1306)
.|-++.++..-.+++.|+.|| +|.|||+...+..+.+.|...|+.+.|-++ +|++++.||+|+.||.++|+++.
T Consensus 284 ~~~esve~~~~ss~lpL~A~G~vdG-~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~ 362 (399)
T KOG0296|consen 284 ELDESVESIPSSSKLPLAACGSVDG-TIAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKF 362 (399)
T ss_pred hhhhhhhhcccccccchhhcccccc-eEEEEecccchhheeccCCCceEEEEEcCcchheeeccCceEEeeeccccceEE
Confidence 444555567778888999999 899999999999999999999999999996 99999999999999999999999
Q ss_pred EEecccCCCCCCCeEEEEEcCCCCccC
Q 000744 1280 SVKANNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1280 ~l~~~~~~~~~~~V~slafSpdg~~La 1306 (1306)
++.+ |...|.+++.+||+++++
T Consensus 363 ~y~G-----H~~~Il~f~ls~~~~~vv 384 (399)
T KOG0296|consen 363 TYTG-----HQMGILDFALSPQKRLVV 384 (399)
T ss_pred EEec-----CchheeEEEEcCCCcEEE
Confidence 9987 889999999999998864
No 27
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.94 E-value=5e-26 Score=255.38 Aligned_cols=271 Identities=14% Similarity=0.151 Sum_probs=221.2
Q ss_pred ccccccccccccccccc------cEEEEEeCCCcEEEEeCCC---ceEEcccCCCCEEEEEEeCC--EEEEEECCCcEEE
Q 000744 992 GTLRKLKKYSAVVTDIQ------KALMNLSSVNATELWHCNE---VTELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKM 1060 (1306)
Q Consensus 992 ~~l~~l~ghs~~V~~i~------~~Lasgs~Dg~I~IWd~~~---~~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~v 1060 (1306)
+.+..+.||...|+++. .+|++|+.|+.|+||++.. +.+...+|..+|.+++|+++ .++|+|.|++|++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 45788999999999887 8999999999999999864 66777899999999999985 9999999999999
Q ss_pred EeCCCCccceEEEEcccCccEEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCceeEEEeec-CCCCeEEEEe--CCcEEEE
Q 000744 1061 WDSGKRVLRLIQEVREHTRAVTCLYVPSSG-DKLYSGSLDKTIRVWSIKPEEIHCLQVHN-VKEAVHELTA--NAEIACF 1136 (1306)
Q Consensus 1061 Wd~~t~~~~~i~~l~~H~~~V~sl~fspdg-~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~-~~~~V~sl~~--~~~~v~~ 1136 (1306)
||+++| +++..+. -...++|+.|+|++ +.|++|+.|+.|+.||+++++ .++.++ |-+.|..+.| .+.....
T Consensus 285 wDtETG--~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k--vvqeYd~hLg~i~~i~F~~~g~rFis 359 (503)
T KOG0282|consen 285 WDTETG--QVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK--VVQEYDRHLGAILDITFVDEGRRFIS 359 (503)
T ss_pred eccccc--eEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH--HHHHHHhhhhheeeeEEccCCceEee
Confidence 999999 8888884 34578999999988 899999999999999999984 444444 5688999998 4444445
Q ss_pred EcCCCeEEEEEecCCEEEe----ccCCCeEEEEEeCC--EEEEEECCCcEEEEECCCCceeEEecCcccccCCc---cEE
Q 000744 1137 VSPATGVKVYNWSGAIKHI----NFNKHVKSLVMTGD--KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ---TIH 1207 (1306)
Q Consensus 1137 s~dg~~I~i~~~~~~~~l~----~~~~~V~sl~~s~d--~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~---~I~ 1207 (1306)
+.|.+.+++|.++..+.+. .......|+..+|+ ++++=+.|+.|.+|.+...-... ..+.+.||. .-.
T Consensus 360 sSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~n---kkK~feGh~vaGys~ 436 (503)
T KOG0282|consen 360 SSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLN---KKKRFEGHSVAGYSC 436 (503)
T ss_pred eccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccC---HhhhhcceeccCcee
Confidence 5555669999999654432 12334556666654 78889999999999876432221 122455666 456
Q ss_pred EEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEecC-CCEEEEEEcCc---EEEEEECCCcEEEEE
Q 000744 1208 SLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFTTG-IDIQHLAVNSD---FIFTATKCGTIEVWL 1271 (1306)
Q Consensus 1208 sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~~-~~V~sla~spd---~Lasgs~Dg~I~IWd 1271 (1306)
.+.|+||+.++++|+.|| .+.+||.++-+.+..++.| ..++.+.|+|. .++||+.||.|++|+
T Consensus 437 ~v~fSpDG~~l~SGdsdG-~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 437 QVDFSPDGRTLCSGDSDG-KVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eEEEcCCCCeEEeecCCc-cEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 788899999999999998 7999999999999999955 77999999997 999999999999996
No 28
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.93 E-value=2.1e-24 Score=228.74 Aligned_cols=233 Identities=14% Similarity=0.173 Sum_probs=198.2
Q ss_pred eEEcccCCCCEEEEEEeCC--EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 000744 1029 TELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWS 1106 (1306)
Q Consensus 1029 ~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWd 1106 (1306)
..++.+|.+.|.++.|++| +|+|+|.||.+.|||.-|. ...+-+.-....|..++|+|.|+++++|+.|+...||+
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Tt--nK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ 125 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTT--NKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYP 125 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccc--cceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEe
Confidence 3678999999999999997 9999999999999999887 66777777888999999999999999999999999999
Q ss_pred cCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCC-EEEEEECCCcEEEEEC
Q 000744 1107 IKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGD-KLYCGCSGYSIQEVDL 1185 (1306)
Q Consensus 1107 i~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d-~L~sgs~Dg~I~iwDl 1185 (1306)
+.+.+.. + +..+ ...+.+|.+.+.|..|-+| +|+||+.|.+.-+||+
T Consensus 126 ls~~d~~--------g-~~~v-----------------------~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDi 173 (343)
T KOG0286|consen 126 LSTRDAE--------G-NVRV-----------------------SRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDI 173 (343)
T ss_pred ccccccc--------c-ccee-----------------------eeeecCccceeEEEEEcCCCceEecCCCceEEEEEc
Confidence 9864200 0 0000 0123357778888888765 7999999999999999
Q ss_pred CCCceeEEecCcccccCCc-cEEEEEEeC-CcEEEEEEecCCCEEEEEECCCCceEEEEec-CCCEEEEEEcCc--EEEE
Q 000744 1186 GNLTSTTFYAGTKKLLGKQ-TIHSLHMHN-GLLFAGGSSVDGTAGKVFSISSKTAVGSFTT-GIDIQHLAVNSD--FIFT 1260 (1306)
Q Consensus 1186 ~~~~~~~~~~~~~~l~gh~-~I~sl~~s~-~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~-~~~V~sla~spd--~Las 1260 (1306)
.+++.+..|. ||. .|.++.++| +...+++|+.|+ +.++||++.+.++++|.+ .++|++|.|.|+ -+++
T Consensus 174 e~g~~~~~f~------GH~gDV~slsl~p~~~ntFvSg~cD~-~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afat 246 (343)
T KOG0286|consen 174 ETGQQTQVFH------GHTGDVMSLSLSPSDGNTFVSGGCDK-SAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFAT 246 (343)
T ss_pred ccceEEEEec------CCcccEEEEecCCCCCCeEEeccccc-ceeeeeccCcceeEeecccccccceEEEccCCCeeee
Confidence 9999999765 677 999999997 666666777798 899999999999999995 567999999998 9999
Q ss_pred EECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCCCcc
Q 000744 1261 ATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDGHPY 1305 (1306)
Q Consensus 1261 gs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~~L 1305 (1306)
||+|++.++||++..+.+..+.. .....+|++++||..|++|
T Consensus 247 GSDD~tcRlyDlRaD~~~a~ys~---~~~~~gitSv~FS~SGRlL 288 (343)
T KOG0286|consen 247 GSDDATCRLYDLRADQELAVYSH---DSIICGITSVAFSKSGRLL 288 (343)
T ss_pred cCCCceeEEEeecCCcEEeeecc---CcccCCceeEEEcccccEE
Confidence 99999999999999999999884 3334789999999999986
No 29
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.93 E-value=3.1e-26 Score=251.82 Aligned_cols=246 Identities=17% Similarity=0.223 Sum_probs=210.1
Q ss_pred cEEEEEeCCCcEEEEeCCC--ceEEcccCCCCEEEEEEeCC--EEEEEECCCcEEEEeCCCCccceEEEEcccC-ccEEE
Q 000744 1009 KALMNLSSVNATELWHCNE--VTELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDSGKRVLRLIQEVREHT-RAVTC 1083 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~--~~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~-~~V~s 1083 (1306)
+.|++|+..|.+.+|+... ...+...|..+|+++.|+.+ +++||+.+|.|++|+..-. .++.++.|. ..|.+
T Consensus 109 RRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn---nVk~~~ahh~eaIRd 185 (464)
T KOG0284|consen 109 RRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN---NVKIIQAHHAEAIRD 185 (464)
T ss_pred ceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh---hhHHhhHhhhhhhhe
Confidence 7899999999999999874 45567899999999999985 9999999999999999865 345556655 89999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEE
Q 000744 1084 LYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKS 1163 (1306)
Q Consensus 1084 l~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~s 1163 (1306)
++|+|+...|+|+|.||+|+|||....+... .+.+|.-.|+|
T Consensus 186 lafSpnDskF~t~SdDg~ikiWdf~~~kee~--------------------------------------vL~GHgwdVks 227 (464)
T KOG0284|consen 186 LAFSPNDSKFLTCSDDGTIKIWDFRMPKEER--------------------------------------VLRGHGWDVKS 227 (464)
T ss_pred eccCCCCceeEEecCCCeEEEEeccCCchhh--------------------------------------eeccCCCCcce
Confidence 9999999999999999999999998763111 11135556677
Q ss_pred EEEeCC--EEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEE
Q 000744 1164 LVMTGD--KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVG 1240 (1306)
Q Consensus 1164 l~~s~d--~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~ 1240 (1306)
+.|+|. .+++|+.|..|++||.+++.++.+ +.+|. .|..+.|++++.+++++|.|. .++++|+++.+.+.
T Consensus 228 vdWHP~kgLiasgskDnlVKlWDprSg~cl~t------lh~HKntVl~~~f~~n~N~Llt~skD~-~~kv~DiR~mkEl~ 300 (464)
T KOG0284|consen 228 VDWHPTKGLIASGSKDNLVKLWDPRSGSCLAT------LHGHKNTVLAVKFNPNGNWLLTGSKDQ-SCKVFDIRTMKELF 300 (464)
T ss_pred eccCCccceeEEccCCceeEeecCCCcchhhh------hhhccceEEEEEEcCCCCeeEEccCCc-eEEEEehhHhHHHH
Confidence 777765 599999999999999999999884 55666 999999999999999999998 89999999888888
Q ss_pred EEe-cCCCEEEEEEcCc---EEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCCCccC
Q 000744 1241 SFT-TGIDIQHLAVNSD---FIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1241 ~l~-~~~~V~sla~spd---~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~~La 1306 (1306)
+++ |...|+++.|+|- ++.+|+.||.|..|.+...+++..+. ..|...||+++|+|=|.+|+
T Consensus 301 ~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~----~AHd~~iwsl~~hPlGhil~ 366 (464)
T KOG0284|consen 301 TYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP----PAHDGEIWSLAYHPLGHILA 366 (464)
T ss_pred HhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCC----cccccceeeeeccccceeEe
Confidence 898 5567999999985 99999999999999999777777776 45779999999999998774
No 30
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.93 E-value=7.5e-24 Score=238.06 Aligned_cols=261 Identities=23% Similarity=0.319 Sum_probs=212.2
Q ss_pred ccccccccccccccc-----cEEEEEeCCCcEEEEeCCC--ceEEcccCCCCEEEEEEeCC--EEEEEECCCcEEEEeCC
Q 000744 994 LRKLKKYSAVVTDIQ-----KALMNLSSVNATELWHCNE--VTELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDSG 1064 (1306)
Q Consensus 994 l~~l~ghs~~V~~i~-----~~Lasgs~Dg~I~IWd~~~--~~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~ 1064 (1306)
++++++|.+.|.++. ++|++|+.||.|++|+..+ .......|...+.++.|+++ .+++++.||.|++||+.
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 456788998888876 7899999999999999875 34556788999999999985 89999999999999999
Q ss_pred CCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEE
Q 000744 1065 KRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVK 1144 (1306)
Q Consensus 1065 t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~ 1144 (1306)
++ +.+..+..|...|.++.|+++++++++++.||.|++||+.+++ ....+.
T Consensus 82 ~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~------------------------- 132 (289)
T cd00200 82 TG--ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK--CLTTLR------------------------- 132 (289)
T ss_pred cc--cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE--EEEEec-------------------------
Confidence 87 7788888999999999999999899999889999999998652 222211
Q ss_pred EEEecCCEEEeccCCCeEEEEEeCC--EEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeCCcEEEEEE
Q 000744 1145 VYNWSGAIKHINFNKHVKSLVMTGD--KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGS 1221 (1306)
Q Consensus 1145 i~~~~~~~~l~~~~~~V~sl~~s~d--~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~ 1221 (1306)
.|...|.++.|+++ .+++++.||.|++||+++++....+. .|. .|.++.|++++..++.+
T Consensus 133 -----------~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~~~ 195 (289)
T cd00200 133 -----------GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLT------GHTGEVNSVAFSPDGEKLLSS 195 (289)
T ss_pred -----------cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEe------cCccccceEEECCCcCEEEEe
Confidence 12334455555542 56666679999999999888777554 455 89999999887444445
Q ss_pred ecCCCEEEEEECCCCceEEEEe-cCCCEEEEEEcCc--EEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEE
Q 000744 1222 SVDGTAGKVFSISSKTAVGSFT-TGIDIQHLAVNSD--FIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGT 1298 (1306)
Q Consensus 1222 s~Dg~~I~IWD~~t~~~l~~l~-~~~~V~sla~spd--~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slaf 1298 (1306)
+.|+ .|++||+.+++.+..+. +...+.++.|+|+ ++++++.||.|++|++.+++....+.. |...|.+++|
T Consensus 196 ~~~~-~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~-----~~~~i~~~~~ 269 (289)
T cd00200 196 SSDG-TIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG-----HTNSVTSLAW 269 (289)
T ss_pred cCCC-cEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccc-----cCCcEEEEEE
Confidence 4577 79999999999998884 5568999999996 777777799999999999988888874 6678999999
Q ss_pred cCCCCccC
Q 000744 1299 GVDGHPYK 1306 (1306)
Q Consensus 1299 Spdg~~La 1306 (1306)
+|+|++|+
T Consensus 270 ~~~~~~l~ 277 (289)
T cd00200 270 SPDGKRLA 277 (289)
T ss_pred CCCCCEEE
Confidence 99988764
No 31
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=1e-23 Score=246.31 Aligned_cols=286 Identities=15% Similarity=0.215 Sum_probs=233.2
Q ss_pred cEEEEEeCCCcEEEEeCCCc--eEEcccCCCCEEEEEEe--CCEEEEEECC-CcEEEEeCCCCccceEEEEcccCccEEE
Q 000744 1009 KALMNLSSVNATELWHCNEV--TELDSSTNGEVLSLIHL--KGRVLSSHSD-GTIKMWDSGKRVLRLIQEVREHTRAVTC 1083 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~--~~i~~~H~~~V~sl~fs--pd~LaSgs~D-g~I~vWd~~t~~~~~i~~l~~H~~~V~s 1083 (1306)
.+|++|=..|...+|++... .+...-...+|..++|+ .|+|+.|+.. |.+-||++.+. ..+...++|...+++
T Consensus 278 ~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE--sYVlKQQgH~~~i~~ 355 (893)
T KOG0291|consen 278 NLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE--SYVLKQQGHSDRITS 355 (893)
T ss_pred eEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecc--ceeeeccccccceee
Confidence 78999999999999999864 33344456789999999 5788888765 89999999998 778888999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeec-CCCCeEEEEe---CCcEEEEEcCCCeEEEEEecCCE--EEecc
Q 000744 1084 LYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHN-VKEAVHELTA---NAEIACFVSPATGVKVYNWSGAI--KHINF 1157 (1306)
Q Consensus 1084 l~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~-~~~~V~sl~~---~~~~v~~s~dg~~I~i~~~~~~~--~l~~~ 1157 (1306)
++++|||+++++|+.||.|||||..++ .|+.++. |...|+.+.| +..+++.+-||+ ++.|+...-. +.+..
T Consensus 356 l~YSpDgq~iaTG~eDgKVKvWn~~Sg--fC~vTFteHts~Vt~v~f~~~g~~llssSLDGt-VRAwDlkRYrNfRTft~ 432 (893)
T KOG0291|consen 356 LAYSPDGQLIATGAEDGKVKVWNTQSG--FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGT-VRAWDLKRYRNFRTFTS 432 (893)
T ss_pred EEECCCCcEEEeccCCCcEEEEeccCc--eEEEEeccCCCceEEEEEEecCCEEEEeecCCe-EEeeeecccceeeeecC
Confidence 999999999999999999999999998 8888886 8899999998 445556666776 7888877432 22222
Q ss_pred CC--CeEEEEEe--CCEEEEEECCC-cEEEEECCCCceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEE
Q 000744 1158 NK--HVKSLVMT--GDKLYCGCSGY-SIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVF 1231 (1306)
Q Consensus 1158 ~~--~V~sl~~s--~d~L~sgs~Dg-~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IW 1231 (1306)
+. ...|++.. ++.+.+|+.|. .|.+|++++|+.+.+ +.||. ||.+++|++.+..++++|+|. +||+|
T Consensus 433 P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDi------LsGHEgPVs~l~f~~~~~~LaS~SWDk-TVRiW 505 (893)
T KOG0291|consen 433 PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDI------LSGHEGPVSGLSFSPDGSLLASGSWDK-TVRIW 505 (893)
T ss_pred CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeeh------hcCCCCcceeeEEccccCeEEeccccc-eEEEE
Confidence 33 34566666 45677788775 599999999999885 45777 999999999999999999999 99999
Q ss_pred ECCC-CceEEEEecCCCEEEEEEcCc--EEEEEECCCcEEEEECCCCeEEEEEecccC---------------CCCCCCe
Q 000744 1232 SISS-KTAVGSFTTGIDIQHLAVNSD--FIFTATKCGTIEVWLKERVTRVASVKANNS---------------GGGHAKI 1293 (1306)
Q Consensus 1232 D~~t-~~~l~~l~~~~~V~sla~spd--~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~---------------~~~~~~V 1293 (1306)
|+-. ...+.++.....+..++|+|+ -++.++-||.|.+||.+.+..+.++.+... .......
T Consensus 506 ~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~F 585 (893)
T KOG0291|consen 506 DIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTF 585 (893)
T ss_pred EeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCce
Confidence 9954 457788888899999999998 999999999999999998877766554210 0012568
Q ss_pred EEEEEcCCCCccC
Q 000744 1294 TCLGTGVDGHPYK 1306 (1306)
Q Consensus 1294 ~slafSpdg~~La 1306 (1306)
+.+++|+||+.|.
T Consensus 586 tti~ySaDG~~Il 598 (893)
T KOG0291|consen 586 TTICYSADGKCIL 598 (893)
T ss_pred EEEEEcCCCCEEE
Confidence 9999999999763
No 32
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.93 E-value=9.3e-24 Score=275.64 Aligned_cols=266 Identities=17% Similarity=0.255 Sum_probs=210.9
Q ss_pred ccccccccccccc-----cEEEEEeCCCcEEEEeCCCc---------eEEcccCCCCEEEEEEeC---CEEEEEECCCcE
Q 000744 996 KLKKYSAVVTDIQ-----KALMNLSSVNATELWHCNEV---------TELDSSTNGEVLSLIHLK---GRVLSSHSDGTI 1058 (1306)
Q Consensus 996 ~l~ghs~~V~~i~-----~~Lasgs~Dg~I~IWd~~~~---------~~i~~~H~~~V~sl~fsp---d~LaSgs~Dg~I 1058 (1306)
.+.+|.+.|.++. ++|++|+.|++|+|||.... ......+...|.+++|++ .+|++|+.||+|
T Consensus 478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 3456888888776 89999999999999997531 011223457899999986 399999999999
Q ss_pred EEEeCCCCccceEEEEcccCccEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEe---CCcEE
Q 000744 1059 KMWDSGKRVLRLIQEVREHTRAVTCLYVPS-SGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTA---NAEIA 1134 (1306)
Q Consensus 1059 ~vWd~~t~~~~~i~~l~~H~~~V~sl~fsp-dg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~---~~~~v 1134 (1306)
++||+.++ +.+..+.+|.+.|++++|+| ++.+|+||+.||+|++||++++. ++..+.+...|.++.| ++..+
T Consensus 558 ~lWd~~~~--~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~--~~~~~~~~~~v~~v~~~~~~g~~l 633 (793)
T PLN00181 558 QVWDVARS--QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV--SIGTIKTKANICCVQFPSESGRSL 633 (793)
T ss_pred EEEECCCC--eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc--EEEEEecCCCeEEEEEeCCCCCEE
Confidence 99999988 88899999999999999997 78999999999999999999874 4444444568889988 23444
Q ss_pred EEEcCCCeEEEEEecCC----EEEeccCCCeEEEEEeC-CEEEEEECCCcEEEEECCCC------ceeEEecCcccccCC
Q 000744 1135 CFVSPATGVKVYNWSGA----IKHINFNKHVKSLVMTG-DKLYCGCSGYSIQEVDLGNL------TSTTFYAGTKKLLGK 1203 (1306)
Q Consensus 1135 ~~s~dg~~I~i~~~~~~----~~l~~~~~~V~sl~~s~-d~L~sgs~Dg~I~iwDl~~~------~~~~~~~~~~~l~gh 1203 (1306)
..+..+..|.+|+.... ..+.+|...|.++.|.+ +++++++.|++|++||++.+ ..+. .+.+|
T Consensus 634 atgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~------~~~gh 707 (793)
T PLN00181 634 AFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLH------SFMGH 707 (793)
T ss_pred EEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceE------EEcCC
Confidence 44444445999998732 24457899999999974 58999999999999999853 3343 34567
Q ss_pred c-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEe--------------cCCCEEEEEEcCc--EEEEEECCCc
Q 000744 1204 Q-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFT--------------TGIDIQHLAVNSD--FIFTATKCGT 1266 (1306)
Q Consensus 1204 ~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~--------------~~~~V~sla~spd--~Lasgs~Dg~ 1266 (1306)
. .+.++.|++++.++++++.|+ .|++|+......+..+. +...|.+++|+|+ ++++|+.||+
T Consensus 708 ~~~i~~v~~s~~~~~lasgs~D~-~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~ 786 (793)
T PLN00181 708 TNVKNFVGLSVSDGYIATGSETN-EVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGN 786 (793)
T ss_pred CCCeeEEEEcCCCCEEEEEeCCC-EEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCc
Confidence 7 889999998888888888888 89999987665443321 1234999999998 9999999999
Q ss_pred EEEEEC
Q 000744 1267 IEVWLK 1272 (1306)
Q Consensus 1267 I~IWd~ 1272 (1306)
|+||++
T Consensus 787 I~i~~~ 792 (793)
T PLN00181 787 IKILEM 792 (793)
T ss_pred EEEEec
Confidence 999996
No 33
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=2.2e-24 Score=262.78 Aligned_cols=247 Identities=20% Similarity=0.340 Sum_probs=204.9
Q ss_pred cEEEEEeCCCcEEEEeCCCc----eEEcccCCCCEEEEEEeCC--EEEEEECCCcEEEEeC-CCCccceEEEEcccCccE
Q 000744 1009 KALMNLSSVNATELWHCNEV----TELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDS-GKRVLRLIQEVREHTRAV 1081 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~----~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~-~t~~~~~i~~l~~H~~~V 1081 (1306)
+++++++.|+.+++|+.... .....+|...|.+++|+|+ ++++|+.|++|+|||+ ..+ .+++++++|...|
T Consensus 172 ~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~--~~~~~l~gH~~~v 249 (456)
T KOG0266|consen 172 RALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG--RNLKTLKGHSTYV 249 (456)
T ss_pred CeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCC--eEEEEecCCCCce
Confidence 78999999999999998532 2334789999999999996 9999999999999999 455 7899999999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeec-CCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCC
Q 000744 1082 TCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHN-VKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKH 1160 (1306)
Q Consensus 1082 ~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~-~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~ 1160 (1306)
++++|+|+|++++||+.|++|+|||++++ .+...+. |.+.|.+++ ++++|+
T Consensus 250 ~~~~f~p~g~~i~Sgs~D~tvriWd~~~~--~~~~~l~~hs~~is~~~-------f~~d~~------------------- 301 (456)
T KOG0266|consen 250 TSVAFSPDGNLLVSGSDDGTVRIWDVRTG--ECVRKLKGHSDGISGLA-------FSPDGN------------------- 301 (456)
T ss_pred EEEEecCCCCEEEEecCCCcEEEEeccCC--eEEEeeeccCCceEEEE-------ECCCCC-------------------
Confidence 99999999999999999999999999997 4444433 445666665 555555
Q ss_pred eEEEEEeCCEEEEEECCCcEEEEECCCCc--eeEEecCcccccCCc---cEEEEEEeCCcEEEEEEecCCCEEEEEECCC
Q 000744 1161 VKSLVMTGDKLYCGCSGYSIQEVDLGNLT--STTFYAGTKKLLGKQ---TIHSLHMHNGLLFAGGSSVDGTAGKVFSISS 1235 (1306)
Q Consensus 1161 V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~--~~~~~~~~~~l~gh~---~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t 1235 (1306)
.+++++.|+.|++||+.++. +...+. ++. +++++.|+|++.++.++..|+ ++++||+.+
T Consensus 302 ---------~l~s~s~d~~i~vwd~~~~~~~~~~~~~------~~~~~~~~~~~~fsp~~~~ll~~~~d~-~~~~w~l~~ 365 (456)
T KOG0266|consen 302 ---------LLVSASYDGTIRVWDLETGSKLCLKLLS------GAENSAPVTSVQFSPNGKYLLSASLDR-TLKLWDLRS 365 (456)
T ss_pred ---------EEEEcCCCccEEEEECCCCceeeeeccc------CCCCCCceeEEEECCCCcEEEEecCCC-eEEEEEccC
Confidence 78999999999999999998 445433 333 489999999999998887776 899999999
Q ss_pred CceEEEEecCCC----EEEEEEcCc--EEEEEECCCcEEEEECCCCeEEEEEecccCCCC-CCCeEEEEEcCCCCccC
Q 000744 1236 KTAVGSFTTGID----IQHLAVNSD--FIFTATKCGTIEVWLKERVTRVASVKANNSGGG-HAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1236 ~~~l~~l~~~~~----V~sla~spd--~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~-~~~V~slafSpdg~~La 1306 (1306)
+.++..+.++.. +.+...++. ++++|+.|+.|++||..++..+..+.+ | ...|..+.|+|...+++
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~-----h~~~~~~~~~~~~~~~~~~ 438 (456)
T KOG0266|consen 366 GKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEG-----HSKAAVSDLSSHPTENLIA 438 (456)
T ss_pred CcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcC-----CCCCceeccccCCCcCeee
Confidence 999999885432 333344444 999999999999999999999999885 5 67889999999887764
No 34
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=8.9e-25 Score=257.79 Aligned_cols=252 Identities=16% Similarity=0.253 Sum_probs=208.8
Q ss_pred cEEEEEeCCCcEEEEeCC--CceEEcccCCCCEEEEEEeCC--EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEE
Q 000744 1009 KALMNLSSVNATELWHCN--EVTELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCL 1084 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~--~~~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl 1084 (1306)
.++.++--.|.|.+||.+ ++..-+..|.++|..|.|+|. .++||+.|-.|+||+.++. +|+.++.||-+.|..+
T Consensus 22 PwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r--rclftL~GHlDYVRt~ 99 (1202)
T KOG0292|consen 22 PWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR--RCLFTLLGHLDYVRTV 99 (1202)
T ss_pred CEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc--eehhhhccccceeEEe
Confidence 678888888999999987 456667899999999999995 9999999999999999999 9999999999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEE
Q 000744 1085 YVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSL 1164 (1306)
Q Consensus 1085 ~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl 1164 (1306)
.|++.-.+++|+|+|.||+||+..++ .|+.. +.+|+..|.|.
T Consensus 100 ~FHheyPWIlSASDDQTIrIWNwqsr--~~iav------------------------------------ltGHnHYVMcA 141 (1202)
T KOG0292|consen 100 FFHHEYPWILSASDDQTIRIWNWQSR--KCIAV------------------------------------LTGHNHYVMCA 141 (1202)
T ss_pred eccCCCceEEEccCCCeEEEEeccCC--ceEEE------------------------------------EecCceEEEee
Confidence 99999999999999999999999987 22221 12477788888
Q ss_pred EEeC--CEEEEEECCCcEEEEECCCCceeEE------------------ec-----CcccccCCc-cEEEEEEeCCcEEE
Q 000744 1165 VMTG--DKLYCGCSGYSIQEVDLGNLTSTTF------------------YA-----GTKKLLGKQ-TIHSLHMHNGLLFA 1218 (1306)
Q Consensus 1165 ~~s~--d~L~sgs~Dg~I~iwDl~~~~~~~~------------------~~-----~~~~l~gh~-~I~sl~~s~~~~ll 1218 (1306)
.|+| |.++++|-|.+|++||+..-+.... |. ....+.||+ .|+-++|+|...++
T Consensus 142 qFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpli 221 (1202)
T KOG0292|consen 142 QFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLI 221 (1202)
T ss_pred ccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceE
Confidence 8886 4799999999999999864211100 10 012356898 99999999999999
Q ss_pred EEEecCCCEEEEEECCCCc--eEEEEe-cCCCEEEEEEcCc--EEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCe
Q 000744 1219 GGSSVDGTAGKVFSISSKT--AVGSFT-TGIDIQHLAVNSD--FIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKI 1293 (1306)
Q Consensus 1219 as~s~Dg~~I~IWD~~t~~--~l~~l~-~~~~V~sla~spd--~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V 1293 (1306)
++|+.|. .|++|.++..+ .+.+.. |.++|.++-|+|. .|++.|+|++|+|||+.+.+.++++.- .+++-
T Consensus 222 VSG~DDR-qVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrr-----endRF 295 (1202)
T KOG0292|consen 222 VSGADDR-QVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRR-----ENDRF 295 (1202)
T ss_pred EecCCcc-eeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeec-----cCCeE
Confidence 9997555 99999987543 234444 4567999999995 999999999999999999999999974 45789
Q ss_pred EEEEEcCCCCccC
Q 000744 1294 TCLGTGVDGHPYK 1306 (1306)
Q Consensus 1294 ~slafSpdg~~La 1306 (1306)
|.++-+|..+++|
T Consensus 296 W~laahP~lNLfA 308 (1202)
T KOG0292|consen 296 WILAAHPELNLFA 308 (1202)
T ss_pred EEEEecCCcceee
Confidence 9999999888764
No 35
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.93 E-value=3.4e-25 Score=244.13 Aligned_cols=261 Identities=19% Similarity=0.255 Sum_probs=218.4
Q ss_pred ccccccccccccccc-----cEEEEEeCCCcEEEEeCCC----ceEEcccCCCCEEEEEEeCC--EEEEEECCCcEEEEe
Q 000744 994 LRKLKKYSAVVTDIQ-----KALMNLSSVNATELWHCNE----VTELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWD 1062 (1306)
Q Consensus 994 l~~l~ghs~~V~~i~-----~~Lasgs~Dg~I~IWd~~~----~~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd 1062 (1306)
...+..|.+.|..+. ..|++|+.|..|++|+... ....+.+..+.|+++.|.++ ++++++.|+.+++|+
T Consensus 168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWN 247 (459)
T ss_pred hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeee
Confidence 456777888888776 7899999999999999864 44556778899999999875 899999999999999
Q ss_pred CCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCe
Q 000744 1063 SGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATG 1142 (1306)
Q Consensus 1063 ~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~ 1142 (1306)
+... +...++.||++.|+++.|......+++|+.|.+||.||+... .|.+..-....+..|.
T Consensus 248 vd~~--r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~--~C~kt~l~~S~cnDI~-------------- 309 (459)
T KOG0288|consen 248 VDSL--RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKA--YCSKTVLPGSQCNDIV-------------- 309 (459)
T ss_pred ccch--hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhh--heeccccccccccceE--------------
Confidence 9998 889999999999999999887777999999999999999885 5665543333333332
Q ss_pred EEEEEecCCEEEeccCCCeEEEEEeCCEEEEEECCCcEEEEECCCCceeEEecCcccccCCccEEEEEEeCCcEEEEEEe
Q 000744 1143 VKVYNWSGAIKHINFNKHVKSLVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLLFAGGSS 1222 (1306)
Q Consensus 1143 I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~s 1222 (1306)
.++..+++|..|++|++||+++..+....+ .+..|+++..+.++.-+.+++
T Consensus 310 -----------------------~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~------~gg~vtSl~ls~~g~~lLsss 360 (459)
T KOG0288|consen 310 -----------------------CSISDVISGHFDKKVRFWDIRSADKTRSVP------LGGRVTSLDLSMDGLELLSSS 360 (459)
T ss_pred -----------------------ecceeeeecccccceEEEeccCCceeeEee------cCcceeeEeeccCCeEEeeec
Confidence 223358899999999999999999888654 333899999998877777778
Q ss_pred cCCCEEEEEECCCCceEEEEec-----CCCEEEEEEcCc--EEEEEECCCcEEEEECCCCeEEEEEecccCCCCC-CCeE
Q 000744 1223 VDGTAGKVFSISSKTAVGSFTT-----GIDIQHLAVNSD--FIFTATKCGTIEVWLKERVTRVASVKANNSGGGH-AKIT 1294 (1306)
Q Consensus 1223 ~Dg~~I~IWD~~t~~~l~~l~~-----~~~V~sla~spd--~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~-~~V~ 1294 (1306)
.|+ ++.+.|.++.+....+.. ..+.+.+.|||+ |+++||.||.|+||++.++++...+.. .+. ..|+
T Consensus 361 RDd-tl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~----s~s~~aI~ 435 (459)
T KOG0288|consen 361 RDD-TLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSL----STSNAAIT 435 (459)
T ss_pred CCC-ceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEecc----CCCCcceE
Confidence 898 899999999999888873 345899999999 999999999999999999999999984 333 3799
Q ss_pred EEEEcCCCCccC
Q 000744 1295 CLGTGVDGHPYK 1306 (1306)
Q Consensus 1295 slafSpdg~~La 1306 (1306)
+++|+|.|..|+
T Consensus 436 s~~W~~sG~~Ll 447 (459)
T KOG0288|consen 436 SLSWNPSGSGLL 447 (459)
T ss_pred EEEEcCCCchhh
Confidence 999999998764
No 36
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.93 E-value=1.4e-23 Score=217.83 Aligned_cols=245 Identities=15% Similarity=0.214 Sum_probs=201.3
Q ss_pred EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeec-CCCCeEE
Q 000744 1048 RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHN-VKEAVHE 1126 (1306)
Q Consensus 1048 ~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~-~~~~V~s 1126 (1306)
+|+|+|+|.+|++|...+| .|..+++...+.|+.+...|+++.|+.++. ..||+||+++++..++..+. |...|++
T Consensus 12 iLvsA~YDhTIRfWqa~tG--~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVta 88 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALTG--ICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTA 88 (311)
T ss_pred EEEeccCcceeeeeehhcC--eEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEE
Confidence 8999999999999999999 999999888889999999999999998885 57999999998865666665 6689999
Q ss_pred EEe--CCcEEEEEcCCCeEEEEEecC--CEEEeccCCCeEEEEEeCC--EEEEEECCCcEEEEECCCCceeEEecCcccc
Q 000744 1127 LTA--NAEIACFVSPATGVKVYNWSG--AIKHINFNKHVKSLVMTGD--KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKL 1200 (1306)
Q Consensus 1127 l~~--~~~~v~~s~dg~~I~i~~~~~--~~~l~~~~~~V~sl~~s~d--~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l 1200 (1306)
+.| .+.....+.++..+++|+... -.+.+.+..+|+++..+|+ .|++|..+|.|++||+.+..+.... +
T Consensus 89 VgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~l-----i 163 (311)
T KOG0315|consen 89 VGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHEL-----I 163 (311)
T ss_pred EEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccccc-----C
Confidence 998 555555555555589999884 3456778999999999988 5999999999999999987665532 2
Q ss_pred cCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCc------eEEEEe-cCCCEEEEEEcCc--EEEEEECCCcEEEE
Q 000744 1201 LGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKT------AVGSFT-TGIDIQHLAVNSD--FIFTATKCGTIEVW 1270 (1306)
Q Consensus 1201 ~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~------~l~~l~-~~~~V~sla~spd--~Lasgs~Dg~I~IW 1270 (1306)
.... +|.++.+.+++.++++....| ..++|++-+.+ ++.+|+ |.+-+..+-+||| +|+++|.|.+++||
T Consensus 164 Pe~~~~i~sl~v~~dgsml~a~nnkG-~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iw 242 (311)
T KOG0315|consen 164 PEDDTSIQSLTVMPDGSMLAAANNKG-NCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIW 242 (311)
T ss_pred CCCCcceeeEEEcCCCcEEEEecCCc-cEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEE
Confidence 2233 899999998888887775444 89999997654 344555 4555999999999 99999999999999
Q ss_pred ECCCC-eEEEEEecccCCCCCCCeEEEEEcCCCCccC
Q 000744 1271 LKERV-TRVASVKANNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1271 d~~tg-~~l~~l~~~~~~~~~~~V~slafSpdg~~La 1306 (1306)
+.++. +.-..+++ |+.++|+.+||.||+||+
T Consensus 243 n~~~~~kle~~l~g-----h~rWvWdc~FS~dg~Ylv 274 (311)
T KOG0315|consen 243 NTDDFFKLELVLTG-----HQRWVWDCAFSADGEYLV 274 (311)
T ss_pred ecCCceeeEEEeec-----CCceEEeeeeccCccEEE
Confidence 99987 44445553 778999999999999985
No 37
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.92 E-value=1.3e-24 Score=257.58 Aligned_cols=222 Identities=16% Similarity=0.239 Sum_probs=189.9
Q ss_pred CCCEEEEEEeCC--EEEEEECCCcEEEEeCCCCc-----------------------------cceEEEEcccCccEEEE
Q 000744 1036 NGEVLSLIHLKG--RVLSSHSDGTIKMWDSGKRV-----------------------------LRLIQEVREHTRAVTCL 1084 (1306)
Q Consensus 1036 ~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t~~-----------------------------~~~i~~l~~H~~~V~sl 1084 (1306)
...|+|..|++| .||.|-.|..|++|.+...+ .....++.||.++|..+
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 345899999997 89999999999999987311 01234577999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEee-cCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEE
Q 000744 1085 YVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVH-NVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKS 1163 (1306)
Q Consensus 1085 ~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~-~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~s 1163 (1306)
.|+|+.++|+|+|.|++||+|.+.+. .++..+ +|..+|+.+. |+|-|.
T Consensus 458 sFsPd~rfLlScSED~svRLWsl~t~--s~~V~y~GH~~PVwdV~-------F~P~Gy---------------------- 506 (707)
T KOG0263|consen 458 SFSPDRRFLLSCSEDSSVRLWSLDTW--SCLVIYKGHLAPVWDVQ-------FAPRGY---------------------- 506 (707)
T ss_pred eecccccceeeccCCcceeeeecccc--eeEEEecCCCcceeeEE-------ecCCce----------------------
Confidence 99999999999999999999999986 333332 3445555555 444444
Q ss_pred EEEeCCEEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEE
Q 000744 1164 LVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSF 1242 (1306)
Q Consensus 1164 l~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l 1242 (1306)
+++|++.|++-++|.....++.++|. ||. .|.|+.|+|+..|+++||.|. ++|+||+.+|..++.|
T Consensus 507 ------YFatas~D~tArLWs~d~~~PlRifa------ghlsDV~cv~FHPNs~Y~aTGSsD~-tVRlWDv~~G~~VRiF 573 (707)
T KOG0263|consen 507 ------YFATASHDQTARLWSTDHNKPLRIFA------GHLSDVDCVSFHPNSNYVATGSSDR-TVRLWDVSTGNSVRIF 573 (707)
T ss_pred ------EEEecCCCceeeeeecccCCchhhhc------ccccccceEEECCcccccccCCCCc-eEEEEEcCCCcEEEEe
Confidence 79999999999999999888888665 666 999999999999999999888 9999999999999999
Q ss_pred ec-CCCEEEEEEcCc--EEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCCCccC
Q 000744 1243 TT-GIDIQHLAVNSD--FIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1243 ~~-~~~V~sla~spd--~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~~La 1306 (1306)
.+ .++|++++|+|+ +|++|+.||.|++||+.+|..+..+.+ |.+.|+++.||.||..||
T Consensus 574 ~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~-----Ht~ti~SlsFS~dg~vLa 635 (707)
T KOG0263|consen 574 TGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKG-----HTGTIYSLSFSRDGNVLA 635 (707)
T ss_pred cCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhc-----ccCceeEEEEecCCCEEE
Confidence 95 567999999999 999999999999999999999999986 788999999999999886
No 38
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.92 E-value=2.1e-23 Score=233.32 Aligned_cols=253 Identities=17% Similarity=0.192 Sum_probs=217.2
Q ss_pred cEEEEEeCCCcEEEEeCCC-ceEEcccCCCCEEEEEEeCC--EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEE
Q 000744 1009 KALMNLSSVNATELWHCNE-VTELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLY 1085 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~-~~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~ 1085 (1306)
.+||+|+.||.++||+... ....+..|+++|.++.|+.+ +|++++.||++.+||..++ +..+.+.-|..+-..|.
T Consensus 248 ~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g--~~~q~f~~~s~~~lDVd 325 (524)
T KOG0273|consen 248 TLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG--TVKQQFEFHSAPALDVD 325 (524)
T ss_pred CeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc--eEEEeeeeccCCccceE
Confidence 7999999999999999875 56667889999999999974 9999999999999999999 78888888998878899
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCCc-eeEEEeecCCCCeEEEEeC--CcEEEEEcCCCeEEEEEecCC---EEEeccCC
Q 000744 1086 VPSSGDKLYSGSLDKTIRVWSIKPEE-IHCLQVHNVKEAVHELTAN--AEIACFVSPATGVKVYNWSGA---IKHINFNK 1159 (1306)
Q Consensus 1086 fspdg~~L~Sgs~DgtI~VWdi~~~~-~~~i~~~~~~~~V~sl~~~--~~~v~~s~dg~~I~i~~~~~~---~~l~~~~~ 1159 (1306)
|- +...|++++.||.|+|+.+.... ...+. .|.++|.++.|+ +.++....|+..+++|+.... ..+..|.+
T Consensus 326 W~-~~~~F~ts~td~~i~V~kv~~~~P~~t~~--GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hsk 402 (524)
T KOG0273|consen 326 WQ-SNDEFATSSTDGCIHVCKVGEDRPVKTFI--GHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSK 402 (524)
T ss_pred Ee-cCceEeecCCCceEEEEEecCCCcceeee--cccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhcc
Confidence 95 45578999999999999998753 23333 377999999994 555555555556999986633 23456899
Q ss_pred CeEEEEEeCC-----------EEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCE
Q 000744 1160 HVKSLVMTGD-----------KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTA 1227 (1306)
Q Consensus 1160 ~V~sl~~s~d-----------~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~ 1227 (1306)
.|..+.|+|. .+++++.|+++++||+..+.++.+|. .|+ +|++++|+|++.++++|+.|| .
T Consensus 403 ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~------kH~~pVysvafS~~g~ylAsGs~dg-~ 475 (524)
T KOG0273|consen 403 EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLM------KHQEPVYSVAFSPNGRYLASGSLDG-C 475 (524)
T ss_pred ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeec------cCCCceEEEEecCCCcEEEecCCCC-e
Confidence 9999999854 48999999999999999999998654 666 999999999999999999999 7
Q ss_pred EEEEECCCCceEEEEecCCCEEEEEEcCc--EEEEEECCCcEEEEECC
Q 000744 1228 GKVFSISSKTAVGSFTTGIDIQHLAVNSD--FIFTATKCGTIEVWLKE 1273 (1306)
Q Consensus 1228 I~IWD~~t~~~l~~l~~~~~V~sla~spd--~Lasgs~Dg~I~IWd~~ 1273 (1306)
|.+|+.++++.++++.+.+.|..++|+.+ +|..+-.||.+.+.|++
T Consensus 476 V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 476 VHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred eEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 99999999999999999999999999876 88888899999999875
No 39
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.92 E-value=1.2e-22 Score=237.63 Aligned_cols=301 Identities=13% Similarity=0.163 Sum_probs=245.8
Q ss_pred ccccccccccccccccc-----cEEEEEeCCCcEEEEeCCCc----eEEcccCCCCEEEEEEeCC--EEEEEECCCcEEE
Q 000744 992 GTLRKLKKYSAVVTDIQ-----KALMNLSSVNATELWHCNEV----TELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKM 1060 (1306)
Q Consensus 992 ~~l~~l~ghs~~V~~i~-----~~Lasgs~Dg~I~IWd~~~~----~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~v 1060 (1306)
..-+++.||...+.++. ++|++||.|.++++|.++.. .....+|++.|...-|..+ .++|.+.||.+.+
T Consensus 136 vl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~ 215 (893)
T KOG0291|consen 136 VLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFV 215 (893)
T ss_pred eEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEE
Confidence 45678889988887776 89999999999999998753 4566899999999999875 8999999999999
Q ss_pred EeCCCCc----------------------cc--------e--EEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 000744 1061 WDSGKRV----------------------LR--------L--IQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIK 1108 (1306)
Q Consensus 1061 Wd~~t~~----------------------~~--------~--i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~ 1108 (1306)
|...... .+ . .+-+......|++.+|++..+.|++|-..|...+|.+.
T Consensus 216 W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP 295 (893)
T KOG0291|consen 216 WTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELP 295 (893)
T ss_pred EEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecC
Confidence 9876110 01 0 01112233679999999999999999999999999998
Q ss_pred CCceeEEEeecC-CCCeEEEEeC--CcEEEEEc-CCCeEEEEEecCCE---EEeccCCCeEEEEEeCC--EEEEEECCCc
Q 000744 1109 PEEIHCLQVHNV-KEAVHELTAN--AEIACFVS-PATGVKVYNWSGAI---KHINFNKHVKSLVMTGD--KLYCGCSGYS 1179 (1306)
Q Consensus 1109 ~~~~~~i~~~~~-~~~V~sl~~~--~~~v~~s~-dg~~I~i~~~~~~~---~l~~~~~~V~sl~~s~d--~L~sgs~Dg~ 1179 (1306)
.- .+++.... ..+|..+.|+ +..+.+.. .=.++.+|.|.... +..+|...+++++++|| .+++|+.||.
T Consensus 296 ~f--~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgK 373 (893)
T KOG0291|consen 296 DF--NLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGK 373 (893)
T ss_pred Cc--eEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCc
Confidence 86 44444442 3788999983 45444443 33469999999664 44578999999999988 7999999999
Q ss_pred EEEEECCCCceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEecCCC--EEEEEEcCc
Q 000744 1180 IQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFTTGID--IQHLAVNSD 1256 (1306)
Q Consensus 1180 I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~~~~--V~sla~spd 1256 (1306)
|++||..+|-|..+|. .|+ .|+.+.|+..+..+.++|.|| +|+.||+......++|....+ ..|++.+|.
T Consensus 374 VKvWn~~SgfC~vTFt------eHts~Vt~v~f~~~g~~llssSLDG-tVRAwDlkRYrNfRTft~P~p~QfscvavD~s 446 (893)
T KOG0291|consen 374 VKVWNTQSGFCFVTFT------EHTSGVTAVQFTARGNVLLSSSLDG-TVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPS 446 (893)
T ss_pred EEEEeccCceEEEEec------cCCCceEEEEEEecCCEEEEeecCC-eEEeeeecccceeeeecCCCceeeeEEEEcCC
Confidence 9999999999999876 555 999999998888888888999 899999999999999986544 788888876
Q ss_pred --EEEEEECCC-cEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCCCccC
Q 000744 1257 --FIFTATKCG-TIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1257 --~Lasgs~Dg-~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~~La 1306 (1306)
.+..|+.|. .|+||+++||+.+..+.+ |.++|.+++|+|+|..||
T Consensus 447 GelV~AG~~d~F~IfvWS~qTGqllDiLsG-----HEgPVs~l~f~~~~~~La 494 (893)
T KOG0291|consen 447 GELVCAGAQDSFEIFVWSVQTGQLLDILSG-----HEGPVSGLSFSPDGSLLA 494 (893)
T ss_pred CCEEEeeccceEEEEEEEeecCeeeehhcC-----CCCcceeeEEccccCeEE
Confidence 777777774 699999999999999986 889999999999999875
No 40
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.92 E-value=4.5e-24 Score=230.83 Aligned_cols=225 Identities=19% Similarity=0.231 Sum_probs=190.7
Q ss_pred ceEEcccCCCCEEEEEEeCC--EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 000744 1028 VTELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVW 1105 (1306)
Q Consensus 1028 ~~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VW 1105 (1306)
...+..+|.++|.|+++.|. +++||+.|++|+|||+.+| ++..++.||...|..+++|+-..|+++++.|+.|+.|
T Consensus 143 l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg--~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCw 220 (460)
T KOG0285|consen 143 LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG--QLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCW 220 (460)
T ss_pred ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccC--eEEEeecchhheeeeeeecccCceEEEecCCCeeEEE
Confidence 55677899999999999993 9999999999999999999 8899999999999999999999999999999999999
Q ss_pred EcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeC--CEEEEEECCCcEEEE
Q 000744 1106 SIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTG--DKLYCGCSGYSIQEV 1183 (1306)
Q Consensus 1106 di~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~--d~L~sgs~Dg~I~iw 1183 (1306)
|+..++ .++.+ .+|-+.|.|++.+| +.|++|+.|.++++|
T Consensus 221 DLe~nk--vIR~Y------------------------------------hGHlS~V~~L~lhPTldvl~t~grDst~RvW 262 (460)
T KOG0285|consen 221 DLEYNK--VIRHY------------------------------------HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVW 262 (460)
T ss_pred echhhh--hHHHh------------------------------------ccccceeEEEeccccceeEEecCCcceEEEe
Confidence 999873 22221 12444555555654 369999999999999
Q ss_pred ECCCCceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEecC-CCEEEEEEcCc--EEE
Q 000744 1184 DLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFTTG-IDIQHLAVNSD--FIF 1259 (1306)
Q Consensus 1184 Dl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~~-~~V~sla~spd--~La 1259 (1306)
|+++...+.++. ||. +|.++.+.+-..-++++|+|+ +|++||+..|+...++.+| ..|.+++.+|. .++
T Consensus 263 DiRtr~~V~~l~------GH~~~V~~V~~~~~dpqvit~S~D~-tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fA 335 (460)
T KOG0285|consen 263 DIRTRASVHVLS------GHTNPVASVMCQPTDPQVITGSHDS-TVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFA 335 (460)
T ss_pred eecccceEEEec------CCCCcceeEEeecCCCceEEecCCc-eEEEeeeccCceeEeeecccceeeEEecCCchhhhh
Confidence 999999888654 677 999999986655566778899 8999999999999999865 45999999998 677
Q ss_pred EEECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCCCcc
Q 000744 1260 TATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDGHPY 1305 (1306)
Q Consensus 1260 sgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~~L 1305 (1306)
++|.| .|+-|++..|..++.+.+ |...|++++.+.||-++
T Consensus 336 Sas~d-nik~w~~p~g~f~~nlsg-----h~~iintl~~nsD~v~~ 375 (460)
T KOG0285|consen 336 SASPD-NIKQWKLPEGEFLQNLSG-----HNAIINTLSVNSDGVLV 375 (460)
T ss_pred ccCCc-cceeccCCccchhhcccc-----ccceeeeeeeccCceEE
Confidence 77766 699999999999988765 77889999999988654
No 41
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.92 E-value=1.1e-23 Score=246.07 Aligned_cols=271 Identities=17% Similarity=0.300 Sum_probs=224.8
Q ss_pred cccccccccccccc-----cEEEEEeCCCcEEEEeCCCceEEcccCCCCEEEEEEeCC--EEEEEECCCcEEEEeCCCCc
Q 000744 995 RKLKKYSAVVTDIQ-----KALMNLSSVNATELWHCNEVTELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDSGKRV 1067 (1306)
Q Consensus 995 ~~l~ghs~~V~~i~-----~~Lasgs~Dg~I~IWd~~~~~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t~~ 1067 (1306)
-.+.||...|..+. ..++||+. +.|++|+..+.+.+.+-..+-+.+..|-|+ ++++|...|.+.++|+...
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~- 444 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASA- 444 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehh-
Confidence 35678888887666 45555555 899999999888888777778999999984 9999999999999999988
Q ss_pred cceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEE
Q 000744 1068 LRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYN 1147 (1306)
Q Consensus 1068 ~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~ 1147 (1306)
..+.+++.|.+.|++++.+||+..+++||.|++|++||+.--. ........+.++.
T Consensus 445 -~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~----~~~gt~~k~lsl~------------------- 500 (888)
T KOG0306|consen 445 -SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVV----SVPGTQKKVLSLK------------------- 500 (888)
T ss_pred -hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEe----ccCcccceeeeec-------------------
Confidence 7888899999999999999999999999999999999975310 0000011111111
Q ss_pred ecCCEEEeccCCCeEEEEEeCC--EEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecC
Q 000744 1148 WSGAIKHINFNKHVKSLVMTGD--KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVD 1224 (1306)
Q Consensus 1148 ~~~~~~l~~~~~~V~sl~~s~d--~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~D 1224 (1306)
..+.......|.|+.+||| +++++--|.++++|-+.+.+... .+.||. ||.|+.++++..++++||.|
T Consensus 501 ---~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFfl------sLYGHkLPV~smDIS~DSklivTgSAD 571 (888)
T KOG0306|consen 501 ---HTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFL------SLYGHKLPVLSMDISPDSKLIVTGSAD 571 (888)
T ss_pred ---cceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeee------eecccccceeEEeccCCcCeEEeccCC
Confidence 1123345667788888866 78999999999999999877655 477999 99999999999999999999
Q ss_pred CCEEEEEECCCCceEEEEe-cCCCEEEEEEcCc--EEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCC
Q 000744 1225 GTAGKVFSISSKTAVGSFT-TGIDIQHLAVNSD--FIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVD 1301 (1306)
Q Consensus 1225 g~~I~IWD~~t~~~l~~l~-~~~~V~sla~spd--~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpd 1301 (1306)
. .|+||-+.-|.|-++|- |...|.++.|-|+ .++++|.|+.|+-||-++.+.++++.+ |+..|++++.+|+
T Consensus 572 K-nVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~-----H~~ev~cLav~~~ 645 (888)
T KOG0306|consen 572 K-NVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDG-----HHSEVWCLAVSPN 645 (888)
T ss_pred C-ceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeecc-----chheeeeeEEcCC
Confidence 8 79999999999998887 4566999999998 899999999999999999999999986 8899999999999
Q ss_pred CCccC
Q 000744 1302 GHPYK 1306 (1306)
Q Consensus 1302 g~~La 1306 (1306)
|.+++
T Consensus 646 G~~vv 650 (888)
T KOG0306|consen 646 GSFVV 650 (888)
T ss_pred CCeEE
Confidence 98864
No 42
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=6.6e-24 Score=225.89 Aligned_cols=247 Identities=17% Similarity=0.254 Sum_probs=202.9
Q ss_pred cEEEEEeCCCcEEEEeCCCc----------eEEcccCCCCEEEEEEeCC--EEEEEECCCcEEEEeCCCCccceEEEEc-
Q 000744 1009 KALMNLSSVNATELWHCNEV----------TELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDSGKRVLRLIQEVR- 1075 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~----------~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t~~~~~i~~l~- 1075 (1306)
+||++|+.||.|.+||+.+. +.-+.-|..+|.|+.|+.| .+++|+.||.|++|.+.+| .|++.|.
T Consensus 226 qyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG--~ClRrFdr 303 (508)
T KOG0275|consen 226 QYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETG--QCLRRFDR 303 (508)
T ss_pred ceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecc--hHHHHhhh
Confidence 89999999999999998642 2233467899999999987 9999999999999999999 9999997
Q ss_pred ccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeec-CCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEE
Q 000744 1076 EHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHN-VKEAVHELTANAEIACFVSPATGVKVYNWSGAIKH 1154 (1306)
Q Consensus 1076 ~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~-~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l 1154 (1306)
.|+..|+|+.|+.|+..++|+|.|.+++|.-+++| ++++.+. |...|+... |++||.
T Consensus 304 AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG--K~LKEfrGHsSyvn~a~-------ft~dG~------------- 361 (508)
T KOG0275|consen 304 AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG--KCLKEFRGHSSYVNEAT-------FTDDGH------------- 361 (508)
T ss_pred hhccCeeEEEEccCcchhhcccccceEEEeccccc--hhHHHhcCccccccceE-------EcCCCC-------------
Confidence 89999999999999999999999999999999998 4554443 445566555 666665
Q ss_pred eccCCCeEEEEEeCCEEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeC--CcEEEEEEecCCCEEEEE
Q 000744 1155 INFNKHVKSLVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHN--GLLFAGGSSVDGTAGKVF 1231 (1306)
Q Consensus 1155 ~~~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~--~~~llas~s~Dg~~I~IW 1231 (1306)
++++++.||+|++|+.++..++.+|.+. +.. +|+++..-| ...++++. ..+ +|+|.
T Consensus 362 ---------------~iisaSsDgtvkvW~~KtteC~~Tfk~~----~~d~~vnsv~~~PKnpeh~iVCN-rsn-tv~im 420 (508)
T KOG0275|consen 362 ---------------HIISASSDGTVKVWHGKTTECLSTFKPL----GTDYPVNSVILLPKNPEHFIVCN-RSN-TVYIM 420 (508)
T ss_pred ---------------eEEEecCCccEEEecCcchhhhhhccCC----CCcccceeEEEcCCCCceEEEEc-CCC-eEEEE
Confidence 7999999999999999999999988743 334 888887742 23344443 344 89999
Q ss_pred ECCCCceEEEEec----CCCEEEEEEcCc--EEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCCCcc
Q 000744 1232 SISSKTAVGSFTT----GIDIQHLAVNSD--FIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDGHPY 1305 (1306)
Q Consensus 1232 D~~t~~~l~~l~~----~~~V~sla~spd--~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~~L 1305 (1306)
++. |+.+++|.. ++...+.+.+|. ++++.++|+.++.|.+.+|+.-.++.. |...|-.++.+|..+.|
T Consensus 421 n~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~V-----hEkdvIGl~HHPHqNll 494 (508)
T KOG0275|consen 421 NMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPV-----HEKDVIGLTHHPHQNLL 494 (508)
T ss_pred ecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeec-----ccccccccccCcccchh
Confidence 875 788899873 455777888887 999999999999999999999999986 66677788888877665
Q ss_pred C
Q 000744 1306 K 1306 (1306)
Q Consensus 1306 a 1306 (1306)
|
T Consensus 495 A 495 (508)
T KOG0275|consen 495 A 495 (508)
T ss_pred h
Confidence 4
No 43
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.92 E-value=3.7e-23 Score=251.52 Aligned_cols=257 Identities=21% Similarity=0.297 Sum_probs=218.2
Q ss_pred cEEEEEeCCCcEEEEeCCCceEE---cccCCCCEEEEEEe--CCEEEEEECCCcEEEEeCCCCccceEEEEcccCccEEE
Q 000744 1009 KALMNLSSVNATELWHCNEVTEL---DSSTNGEVLSLIHL--KGRVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTC 1083 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~~~i---~~~H~~~V~sl~fs--pd~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~s 1083 (1306)
.++.+|+.|++|++||..+...+ ..+|.+.|++++|. .+++++|+.|.++++||..+| +|++++.+|.+.|.+
T Consensus 219 ~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg--~C~~~l~gh~stv~~ 296 (537)
T KOG0274|consen 219 GFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG--ECTHSLQGHTSSVRC 296 (537)
T ss_pred CeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC--cEEEEecCCCceEEE
Confidence 78999999999999998864443 57999999999999 679999999999999999999 999999999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeec-CCCCeEEEEe-CCcEEEEEcCCCeEEEEEecCC---EEEeccC
Q 000744 1084 LYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHN-VKEAVHELTA-NAEIACFVSPATGVKVYNWSGA---IKHINFN 1158 (1306)
Q Consensus 1084 l~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~-~~~~V~sl~~-~~~~v~~s~dg~~I~i~~~~~~---~~l~~~~ 1158 (1306)
+.. .+..+++||.|.+|+||++.++ .++.... |.++|.++.. .+.+++.+.|| .|.+|+.... ..+.+|.
T Consensus 297 ~~~--~~~~~~sgs~D~tVkVW~v~n~--~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~-~v~VW~~~~~~cl~sl~gH~ 371 (537)
T KOG0274|consen 297 LTI--DPFLLVSGSRDNTVKVWDVTNG--ACLNLLRGHTGPVNCVQLDEPLLVSGSYDG-TVKVWDPRTGKCLKSLSGHT 371 (537)
T ss_pred EEc--cCceEeeccCCceEEEEeccCc--ceEEEeccccccEEEEEecCCEEEEEecCc-eEEEEEhhhceeeeeecCCc
Confidence 986 4567889999999999999988 5666655 8899999999 55556666677 6999999843 2345799
Q ss_pred CCeEEEEEeC-CEEEEEECCCcEEEEECCCC-ceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCC
Q 000744 1159 KHVKSLVMTG-DKLYCGCSGYSIQEVDLGNL-TSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISS 1235 (1306)
Q Consensus 1159 ~~V~sl~~s~-d~L~sgs~Dg~I~iwDl~~~-~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t 1235 (1306)
..|.++.+.+ +.+++|+.|++|++||++++ +++.++. +|. .+..+.+ ...++.+++.|+ +|++||..+
T Consensus 372 ~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~------~h~~~v~~l~~--~~~~Lvs~~aD~-~Ik~WD~~~ 442 (537)
T KOG0274|consen 372 GRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQ------GHTSLVSSLLL--RDNFLVSSSADG-TIKLWDAEE 442 (537)
T ss_pred ceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhc------CCccccccccc--ccceeEeccccc-cEEEeeccc
Confidence 9999999999 89999999999999999999 8887554 555 4544443 334455666798 899999999
Q ss_pred CceEEEEec-C-CCEEEEEEcCcEEEEEECCCcEEEEECCCCeEEEEE
Q 000744 1236 KTAVGSFTT-G-IDIQHLAVNSDFIFTATKCGTIEVWLKERVTRVASV 1281 (1306)
Q Consensus 1236 ~~~l~~l~~-~-~~V~sla~spd~Lasgs~Dg~I~IWd~~tg~~l~~l 1281 (1306)
+++++++.+ + ..|+.+++..+.+++++.||++++||+++++....+
T Consensus 443 ~~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 443 GECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred CceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEecccCchhhhh
Confidence 999999987 3 779999988568999999999999999999988866
No 44
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.92 E-value=8.4e-25 Score=240.54 Aligned_cols=233 Identities=20% Similarity=0.319 Sum_probs=191.3
Q ss_pred cccccccccccccc-----cEEEEEeCCCcEEEEeCCC--ceEEcccCCCCEEEEEEeCC--EEEEEECCCcEEEEeCCC
Q 000744 995 RKLKKYSAVVTDIQ-----KALMNLSSVNATELWHCNE--VTELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDSGK 1065 (1306)
Q Consensus 995 ~~l~ghs~~V~~i~-----~~Lasgs~Dg~I~IWd~~~--~~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t 1065 (1306)
..++.|...|.++. .+++||+.+|.||+|+... .+.+...|...|++++|+|+ .++|+|.||+|+|||...
T Consensus 132 tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~ 211 (464)
T KOG0284|consen 132 TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM 211 (464)
T ss_pred HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccC
Confidence 34667888888776 8999999999999999763 44444556699999999984 999999999999999987
Q ss_pred CccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEe-ecCCCCeEEEEeCCcEEEEEcCCCeEE
Q 000744 1066 RVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQV-HNVKEAVHELTANAEIACFVSPATGVK 1144 (1306)
Q Consensus 1066 ~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~-~~~~~~V~sl~~~~~~v~~s~dg~~I~ 1144 (1306)
. +.-..+.+|.-.|.+++|+|....++|||.|..|++||.+++ .|+.. +.|+..|..+. |.++++
T Consensus 212 ~--kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg--~cl~tlh~HKntVl~~~-------f~~n~N--- 277 (464)
T KOG0284|consen 212 P--KEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSG--SCLATLHGHKNTVLAVK-------FNPNGN--- 277 (464)
T ss_pred C--chhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCc--chhhhhhhccceEEEEE-------EcCCCC---
Confidence 7 666778999999999999999999999999999999999998 44433 23455555555 444444
Q ss_pred EEEecCCEEEeccCCCeEEEEEeCCEEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeC-CcEEEEEEe
Q 000744 1145 VYNWSGAIKHINFNKHVKSLVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHN-GLLFAGGSS 1222 (1306)
Q Consensus 1145 i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~-~~~llas~s 1222 (1306)
+|+++|.|..+++||+++.+.++++. +|. .|+++.|+| ...++++++
T Consensus 278 -------------------------~Llt~skD~~~kv~DiR~mkEl~~~r------~Hkkdv~~~~WhP~~~~lftsgg 326 (464)
T KOG0284|consen 278 -------------------------WLLTGSKDQSCKVFDIRTMKELFTYR------GHKKDVTSLTWHPLNESLFTSGG 326 (464)
T ss_pred -------------------------eeEEccCCceEEEEehhHhHHHHHhh------cchhhheeeccccccccceeecc
Confidence 89999999999999999888887655 555 999999995 334455556
Q ss_pred cCCCEEEEEECCCCceEEEEe--cCCCEEEEEEcCc--EEEEEECCCcEEEEECC
Q 000744 1223 VDGTAGKVFSISSKTAVGSFT--TGIDIQHLAVNSD--FIFTATKCGTIEVWLKE 1273 (1306)
Q Consensus 1223 ~Dg~~I~IWD~~t~~~l~~l~--~~~~V~sla~spd--~Lasgs~Dg~I~IWd~~ 1273 (1306)
.|| .|..|.+...+.+..+. |...|++++|+|- +|++|+.|.++++|...
T Consensus 327 ~Dg-svvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 327 SDG-SVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred CCC-ceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 798 79999998777777666 5667999999997 99999999999999754
No 45
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.5e-23 Score=240.26 Aligned_cols=215 Identities=19% Similarity=0.212 Sum_probs=184.3
Q ss_pred cEEEEEeCCCcEEEEeCCCce--EEcccCCCCEEEEEEeCC--EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEE
Q 000744 1009 KALMNLSSVNATELWHCNEVT--ELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCL 1084 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~~--~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl 1084 (1306)
+.+++|+.|..|+||+..+.. ..+..|..-|.||+.+|. +++|+|.|-+|++||.+.+ +.+.++|.||+..|.++
T Consensus 68 nWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~-wa~~qtfeGH~HyVMqv 146 (794)
T KOG0276|consen 68 NWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE-WACEQTFEGHEHYVMQV 146 (794)
T ss_pred ceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCc-eeeeeEEcCcceEEEEE
Confidence 789999999999999998754 446789999999999995 9999999999999999875 68999999999999999
Q ss_pred EEcC-CCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEE
Q 000744 1085 YVPS-SGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKS 1163 (1306)
Q Consensus 1085 ~fsp-dg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~s 1163 (1306)
+|+| |.+.++|+|.|+||+||.+.+. .+...+ .+|...|+|
T Consensus 147 ~fnPkD~ntFaS~sLDrTVKVWslgs~-----------~~nfTl---------------------------~gHekGVN~ 188 (794)
T KOG0276|consen 147 AFNPKDPNTFASASLDRTVKVWSLGSP-----------HPNFTL---------------------------EGHEKGVNC 188 (794)
T ss_pred EecCCCccceeeeeccccEEEEEcCCC-----------CCceee---------------------------eccccCcce
Confidence 9999 7889999999999999999875 122111 136666777
Q ss_pred EEEeCC----EEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCce
Q 000744 1164 LVMTGD----KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTA 1238 (1306)
Q Consensus 1164 l~~s~d----~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~ 1238 (1306)
+.|-+. ++++|+.|.+|++||.++.+|+++ +.||. .|..+.|+|.-.++++||.|| ++|||+..|.+.
T Consensus 189 Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~T------LeGHt~Nvs~v~fhp~lpiiisgsEDG-TvriWhs~Ty~l 261 (794)
T KOG0276|consen 189 VDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQT------LEGHTNNVSFVFFHPELPIIISGSEDG-TVRIWNSKTYKL 261 (794)
T ss_pred EEeccCCCcceEEecCCCceEEEeecchHHHHHH------hhcccccceEEEecCCCcEEEEecCCc-cEEEecCcceeh
Confidence 777632 799999999999999999999985 55777 999999999999999999998 899999999888
Q ss_pred EEEEe-cCCCEEEEEEcCc--EEEEEECCCcEEE
Q 000744 1239 VGSFT-TGIDIQHLAVNSD--FIFTATKCGTIEV 1269 (1306)
Q Consensus 1239 l~~l~-~~~~V~sla~spd--~Lasgs~Dg~I~I 1269 (1306)
..++. +-..|++++-.+. .++.|.+.|.|.|
T Consensus 262 E~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 262 EKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred hhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 88887 4567999998776 7777777776644
No 46
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=3.1e-23 Score=244.94 Aligned_cols=264 Identities=16% Similarity=0.196 Sum_probs=208.8
Q ss_pred ccccccccccccccccc-----cEEEEEeCCCcEEEEeCCCc--eEEcccCCCCEEEEEEeCC--EEEEEECCCcEEEEe
Q 000744 992 GTLRKLKKYSAVVTDIQ-----KALMNLSSVNATELWHCNEV--TELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWD 1062 (1306)
Q Consensus 992 ~~l~~l~ghs~~V~~i~-----~~Lasgs~Dg~I~IWd~~~~--~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd 1062 (1306)
.++.+|..|.|.|..+. .+++||+.|-+|+||+.++- .-.+.||-.-|..+.|++. +|+|+|.|.||+|||
T Consensus 42 tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWN 121 (1202)
T KOG0292|consen 42 TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWN 121 (1202)
T ss_pred hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEe
Confidence 45789999999998887 89999999999999999864 4456799999999999986 999999999999999
Q ss_pred CCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCe
Q 000744 1063 SGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATG 1142 (1306)
Q Consensus 1063 ~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~ 1142 (1306)
+.++ +++..+.||...|.|..|+|....++|+|.|.+|||||+..-..+....-...+.+.... .++.
T Consensus 122 wqsr--~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~---------~~~d- 189 (1202)
T KOG0292|consen 122 WQSR--KCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQ---------GNSD- 189 (1202)
T ss_pred ccCC--ceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccc---------cchh-
Confidence 9999 999999999999999999999999999999999999999763211110000000000000 0000
Q ss_pred EEEEEec--CCEEEeccCCCeEEEEEeCC--EEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeCCcEE
Q 000744 1143 VKVYNWS--GAIKHINFNKHVKSLVMTGD--KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLF 1217 (1306)
Q Consensus 1143 I~i~~~~--~~~~l~~~~~~V~sl~~s~d--~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~l 1217 (1306)
.....| -+..+-+|...|+-++|+|. .|++|+.|..|++|.+...+.-.. .++.||. .|.++-|+|...+
T Consensus 190 -Lfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEv----DtcrgH~nnVssvlfhp~q~l 264 (1202)
T KOG0292|consen 190 -LFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEV----DTCRGHYNNVSSVLFHPHQDL 264 (1202)
T ss_pred -hcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceee----hhhhcccCCcceEEecCccce
Confidence 000011 11234579999999999995 799999999999999886553221 2467898 9999999999989
Q ss_pred EEEEecCCCEEEEEECCCCceEEEEec-CCCEEEEEEcCc-EEEEEECCCcEEEEECC
Q 000744 1218 AGGSSVDGTAGKVFSISSKTAVGSFTT-GIDIQHLAVNSD-FIFTATKCGTIEVWLKE 1273 (1306)
Q Consensus 1218 las~s~Dg~~I~IWD~~t~~~l~~l~~-~~~V~sla~spd-~Lasgs~Dg~I~IWd~~ 1273 (1306)
+.+.+.|+ +|+|||+...+.+.+|.. +...+.++.+|. -++.++.|+-+.||.++
T Consensus 265 IlSnsEDk-sirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkle 321 (1202)
T KOG0292|consen 265 ILSNSEDK-SIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLE 321 (1202)
T ss_pred eEecCCCc-cEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEc
Confidence 99999898 899999999999999985 677999999998 66666777777777765
No 47
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3.7e-22 Score=210.02 Aligned_cols=261 Identities=15% Similarity=0.201 Sum_probs=207.4
Q ss_pred eEEcccCCCCEEEEEEeCC---EEEEEECCCcEEEEeCCC-CccceEEEE-cccCccEEEEEEcCCCCEEEEEeCCCcEE
Q 000744 1029 TELDSSTNGEVLSLIHLKG---RVLSSHSDGTIKMWDSGK-RVLRLIQEV-REHTRAVTCLYVPSSGDKLYSGSLDKTIR 1103 (1306)
Q Consensus 1029 ~~i~~~H~~~V~sl~fspd---~LaSgs~Dg~I~vWd~~t-~~~~~i~~l-~~H~~~V~sl~fspdg~~L~Sgs~DgtI~ 1103 (1306)
.....+|.+.|+.++|+|. .|+|||.|..|++|+... ..+.+...+ .+|+..|.+++|+|.|++|++||.|.++.
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~ 86 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVV 86 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEE
Confidence 3456799999999999996 799999999999999983 334565555 47999999999999999999999999999
Q ss_pred EEEcCCCceeEEEeec-CCCCeEEEEe--CCcEEEEEcCCCeEEEEEec--CC----EEEeccCCCeEEEEEeC--CEEE
Q 000744 1104 VWSIKPEEIHCLQVHN-VKEAVHELTA--NAEIACFVSPATGVKVYNWS--GA----IKHINFNKHVKSLVMTG--DKLY 1172 (1306)
Q Consensus 1104 VWdi~~~~~~~i~~~~-~~~~V~sl~~--~~~~v~~s~dg~~I~i~~~~--~~----~~l~~~~~~V~sl~~s~--d~L~ 1172 (1306)
||.-..++.+|+..+. |...|.+++| ++.++....-++.+-+|..+ +. ..+.+|...|..+.|+| +.|+
T Consensus 87 Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~ 166 (312)
T KOG0645|consen 87 IWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLF 166 (312)
T ss_pred EeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeE
Confidence 9998888888888775 8899999998 56666666666778888887 32 34557999999999999 6899
Q ss_pred EEECCCcEEEEECCC---CceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEe--cCC
Q 000744 1173 CGCSGYSIQEVDLGN---LTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFT--TGI 1246 (1306)
Q Consensus 1173 sgs~Dg~I~iwDl~~---~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~--~~~ 1246 (1306)
+++.|.+|++|+-.. -.++++ +.+|. .|+++.|++.+.-+++++.|+ +++||-..+ .+. |..
T Consensus 167 S~SYDnTIk~~~~~~dddW~c~~t------l~g~~~TVW~~~F~~~G~rl~s~sdD~-tv~Iw~~~~-----~~~~~~sr 234 (312)
T KOG0645|consen 167 SCSYDNTIKVYRDEDDDDWECVQT------LDGHENTVWSLAFDNIGSRLVSCSDDG-TVSIWRLYT-----DLSGMHSR 234 (312)
T ss_pred EeccCCeEEEEeecCCCCeeEEEE------ecCccceEEEEEecCCCceEEEecCCc-ceEeeeecc-----Ccchhccc
Confidence 999999999998763 345553 55777 999999998776666777677 899998652 233 456
Q ss_pred CEEEEEEcCcEEEEEECCCcEEEEECCCCe--EEEEEecccCCCCCCCeEEEEEcCC
Q 000744 1247 DIQHLAVNSDFIFTATKCGTIEVWLKERVT--RVASVKANNSGGGHAKITCLGTGVD 1301 (1306)
Q Consensus 1247 ~V~sla~spd~Lasgs~Dg~I~IWd~~tg~--~l~~l~~~~~~~~~~~V~slafSpd 1301 (1306)
.++.++|..+.|++++.|+.|++|.-..+- +...+.....+.|...|+++.|+|.
T Consensus 235 ~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~ 291 (312)
T KOG0645|consen 235 ALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPK 291 (312)
T ss_pred ceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCC
Confidence 799999995599999999999999876431 1111111112457789999999994
No 48
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.91 E-value=1.1e-22 Score=221.63 Aligned_cols=281 Identities=16% Similarity=0.134 Sum_probs=209.1
Q ss_pred ccccCCchhHHHhhhhhhhhhccccccccccccccccc-----cEEEEEeCCCcEEEEeCCCce--EEcccCCCCEEEEE
Q 000744 971 KTFISDPVALEELGKYAKCIYGTLRKLKKYSAVVTDIQ-----KALMNLSSVNATELWHCNEVT--ELDSSTNGEVLSLI 1043 (1306)
Q Consensus 971 ~~~l~d~~~~~~l~~~~~~~~~~l~~l~ghs~~V~~i~-----~~Lasgs~Dg~I~IWd~~~~~--~i~~~H~~~V~sl~ 1043 (1306)
..|+|+..... .+..+.||.+.|.++. .+||||+.+|.|+||+..+.. ......-+.+.-+.
T Consensus 87 ~AflW~~~~ge-----------~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~ 155 (399)
T KOG0296|consen 87 LAFLWDISTGE-----------FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLK 155 (399)
T ss_pred eEEEEEccCCc-----------ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEE
Confidence 55788644433 3678899999998887 899999999999999988643 23334566788889
Q ss_pred EeCC--EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCC
Q 000744 1044 HLKG--RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVK 1121 (1306)
Q Consensus 1044 fspd--~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~ 1121 (1306)
|+|. .|+.|+.||.+.+|.+.++ ...+.+.||+.++++=.|.|+|+.+++|..||+|++||..++...+.......
T Consensus 156 WHp~a~illAG~~DGsvWmw~ip~~--~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~ 233 (399)
T KOG0296|consen 156 WHPRAHILLAGSTDGSVWMWQIPSQ--ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEG 233 (399)
T ss_pred ecccccEEEeecCCCcEEEEECCCc--ceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEeccccc
Confidence 9994 9999999999999999987 67889999999999999999999999999999999999999963322221122
Q ss_pred CCeEEEEe---CCcEEEEEcCCCeEEEEEecCCEEE----------eccCCCeEEEEEeCC-----EEEEEECCCcEEEE
Q 000744 1122 EAVHELTA---NAEIACFVSPATGVKVYNWSGAIKH----------INFNKHVKSLVMTGD-----KLYCGCSGYSIQEV 1183 (1306)
Q Consensus 1122 ~~V~sl~~---~~~~v~~s~dg~~I~i~~~~~~~~l----------~~~~~~V~sl~~s~d-----~L~sgs~Dg~I~iw 1183 (1306)
....++.+ ....+..+.++....+....|++.. ..+...+.|+.+.|- ..++|+.||+|-||
T Consensus 234 ~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iy 313 (399)
T KOG0296|consen 234 LELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIY 313 (399)
T ss_pred CcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEE
Confidence 33444443 1122223333331111111122111 123445566665543 47899999999999
Q ss_pred ECCCCceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEecCC-CEEEEEEcCc--EEE
Q 000744 1184 DLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFTTGI-DIQHLAVNSD--FIF 1259 (1306)
Q Consensus 1184 Dl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~~~-~V~sla~spd--~La 1259 (1306)
|+...+...++ .|. +|..+.|-+ ..++.+++.|| .|+.||.++|+++.++.+|. .|.+++++|+ +++
T Consensus 314 D~a~~~~R~~c-------~he~~V~~l~w~~-t~~l~t~c~~g-~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vv 384 (399)
T KOG0296|consen 314 DLAASTLRHIC-------EHEDGVTKLKWLN-TDYLLTACANG-KVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVV 384 (399)
T ss_pred ecccchhheec-------cCCCceEEEEEcC-cchheeeccCc-eEEeeeccccceEEEEecCchheeEEEEcCCCcEEE
Confidence 99988776543 455 899999988 44444455688 89999999999999999654 6999999998 999
Q ss_pred EEECCCcEEEEECC
Q 000744 1260 TATKCGTIEVWLKE 1273 (1306)
Q Consensus 1260 sgs~Dg~I~IWd~~ 1273 (1306)
|+|.|++.+||++.
T Consensus 385 T~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 385 TVSDDNTALVFEVP 398 (399)
T ss_pred EecCCCeEEEEecC
Confidence 99999999999875
No 49
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.91 E-value=9e-23 Score=248.70 Aligned_cols=241 Identities=22% Similarity=0.341 Sum_probs=198.2
Q ss_pred cccccccccccccccc-----cEEEEEeCCCcEEEEeCC-C--ceEEcccCCCCEEEEEEeCC--EEEEEECCCcEEEEe
Q 000744 993 TLRKLKKYSAVVTDIQ-----KALMNLSSVNATELWHCN-E--VTELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWD 1062 (1306)
Q Consensus 993 ~l~~l~ghs~~V~~i~-----~~Lasgs~Dg~I~IWd~~-~--~~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd 1062 (1306)
.++.+.+|...|.++. +++++|+.|++|+|||+. . ...+..+|...|++++|+|+ .+++|+.|++|+|||
T Consensus 195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd 274 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWD 274 (456)
T ss_pred hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEe
Confidence 5677789999998887 799999999999999994 2 55677899999999999994 999999999999999
Q ss_pred CCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeec-CCCCeEEEEeCCcEEEEEcCCC
Q 000744 1063 SGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHN-VKEAVHELTANAEIACFVSPAT 1141 (1306)
Q Consensus 1063 ~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~-~~~~V~sl~~~~~~v~~s~dg~ 1141 (1306)
++++ +++..+.+|.+.|++++|++++++|++++.||.|+|||+.++...+..... +..
T Consensus 275 ~~~~--~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~------------------- 333 (456)
T KOG0266|consen 275 VRTG--ECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAEN------------------- 333 (456)
T ss_pred ccCC--eEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCC-------------------
Confidence 9998 999999999999999999999999999999999999999998522222211 101
Q ss_pred eEEEEEecCCEEEeccCCCeEEEEEeCC--EEEEEECCCcEEEEECCCCceeEEecCcccccCCccEEEEEEeCCcEEEE
Q 000744 1142 GVKVYNWSGAIKHINFNKHVKSLVMTGD--KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLLFAG 1219 (1306)
Q Consensus 1142 ~I~i~~~~~~~~l~~~~~~V~sl~~s~d--~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~lla 1219 (1306)
.. .++++.|+|+ ++++++.|+.+++||+..+.....+.++... ...+.+...++++.++.
T Consensus 334 ---------------~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~ 395 (456)
T KOG0266|consen 334 ---------------SA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNL--VRCIFSPTLSTGGKLIY 395 (456)
T ss_pred ---------------CC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCc--ceeEecccccCCCCeEE
Confidence 11 3455555533 8999999999999999999998877755431 11334444468888899
Q ss_pred EEecCCCEEEEEECCCCceEEEEecC--CCEEEEEEcCc--EEEEEE--CCCcEEEEECC
Q 000744 1220 GSSVDGTAGKVFSISSKTAVGSFTTG--IDIQHLAVNSD--FIFTAT--KCGTIEVWLKE 1273 (1306)
Q Consensus 1220 s~s~Dg~~I~IWD~~t~~~l~~l~~~--~~V~sla~spd--~Lasgs--~Dg~I~IWd~~ 1273 (1306)
+|+.|+ .|++||..++..+..+.+| ..+..+.+++. ++++++ .|+.|++|...
T Consensus 396 sg~~d~-~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 396 SGSEDG-SVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred EEeCCc-eEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 999898 8999999999999888866 56899999987 888887 78999999864
No 50
>PTZ00420 coronin; Provisional
Probab=99.90 E-value=5.7e-22 Score=241.89 Aligned_cols=249 Identities=11% Similarity=0.089 Sum_probs=177.3
Q ss_pred EEeCCCcEEEEeCCC--ceEEcccCCCCEEEEEEeCC---EEEEEECCCcEEEEeCCCCcc------ceEEEEcccCccE
Q 000744 1013 NLSSVNATELWHCNE--VTELDSSTNGEVLSLIHLKG---RVLSSHSDGTIKMWDSGKRVL------RLIQEVREHTRAV 1081 (1306)
Q Consensus 1013 sgs~Dg~I~IWd~~~--~~~i~~~H~~~V~sl~fspd---~LaSgs~Dg~I~vWd~~t~~~------~~i~~l~~H~~~V 1081 (1306)
.|+.++.|++|+... ......+|.+.|.+++|+|+ +|+||+.||+|++||+.++.. .++..+.+|...|
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V 128 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI 128 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence 477889999999764 34456799999999999983 999999999999999975421 2455788999999
Q ss_pred EEEEEcCCCCE-EEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCC
Q 000744 1082 TCLYVPSSGDK-LYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKH 1160 (1306)
Q Consensus 1082 ~sl~fspdg~~-L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~ 1160 (1306)
++++|+|++.. +++|+.||+|+|||+++++ ....+.+...|.++. |+++|.
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~--~~~~i~~~~~V~Sls-------wspdG~------------------- 180 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEK--RAFQINMPKKLSSLK-------WNIKGN------------------- 180 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECCCCc--EEEEEecCCcEEEEE-------ECCCCC-------------------
Confidence 99999998875 5799999999999999874 222222335566655 555555
Q ss_pred eEEEEEeCCEEEEEECCCcEEEEECCCCceeEEecCcccccCCccEEEEEEeCCcEEEEEEecCC---CEEEEEECCC-C
Q 000744 1161 VKSLVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLLFAGGSSVDG---TAGKVFSISS-K 1236 (1306)
Q Consensus 1161 V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~s~Dg---~~I~IWD~~t-~ 1236 (1306)
.|++++.|+.|++||+++++.+..+.+|........++...|++++.++++++.|+ ++|+|||+++ +
T Consensus 181 ---------lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~ 251 (568)
T PTZ00420 181 ---------LLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT 251 (568)
T ss_pred ---------EEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC
Confidence 68889999999999999999887665432100000122233455554444544454 3799999985 6
Q ss_pred ceEEEEecCCCEEE--EEEcCc---EEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCC
Q 000744 1237 TAVGSFTTGIDIQH--LAVNSD---FIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDG 1302 (1306)
Q Consensus 1237 ~~l~~l~~~~~V~s--la~spd---~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg 1302 (1306)
.++..+.++..... -.|.++ ++++|+.|++|++|++..+. +..+.. ..+..++.+++|.|+-
T Consensus 252 ~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~---~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 252 SALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNE---YKSCSPFRSFGFLPKQ 318 (568)
T ss_pred CceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeecc---cccCCCccceEEcccc
Confidence 67776664433222 233333 88899999999999998764 444442 3344788999999974
No 51
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.90 E-value=8.4e-23 Score=223.38 Aligned_cols=238 Identities=16% Similarity=0.217 Sum_probs=189.0
Q ss_pred ccccccccccccccccc--------cEEEEEeCCCcEEEEeCCC------ceEEcccCCCCEEEEEEeCC--EEEEEECC
Q 000744 992 GTLRKLKKYSAVVTDIQ--------KALMNLSSVNATELWHCNE------VTELDSSTNGEVLSLIHLKG--RVLSSHSD 1055 (1306)
Q Consensus 992 ~~l~~l~ghs~~V~~i~--------~~Lasgs~Dg~I~IWd~~~------~~~i~~~H~~~V~sl~fspd--~LaSgs~D 1055 (1306)
+..+++.||++.+.++. ..|+++|.|.++++|.++. ......||...|-+|+..++ .+++||.|
T Consensus 135 k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D 214 (423)
T KOG0313|consen 135 KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWD 214 (423)
T ss_pred ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeeccc
Confidence 56788999999887655 5699999999999998863 23334599999999998875 99999999
Q ss_pred CcEEEEeCCCC-----------------------ccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCce
Q 000744 1056 GTIKMWDSGKR-----------------------VLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEI 1112 (1306)
Q Consensus 1056 g~I~vWd~~t~-----------------------~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~ 1112 (1306)
.+|+||+..+. ...++.++.||..+|.+|.|++ ...++|+|.|.+|++||+.++.
T Consensus 215 ~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~- 292 (423)
T KOG0313|consen 215 TMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGG- 292 (423)
T ss_pred ceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeeccc-
Confidence 99999993211 1256778899999999999987 7799999999999999999983
Q ss_pred eEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCC--EEEEEECCCcEEEEECCCCce
Q 000744 1113 HCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGD--KLYCGCSGYSIQEVDLGNLTS 1190 (1306)
Q Consensus 1113 ~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d--~L~sgs~Dg~I~iwDl~~~~~ 1190 (1306)
+...... +...+|+.+++. .|++|+.|..|++||.+++.-
T Consensus 293 -~~~~~~~-------------------------------------~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~g 334 (423)
T KOG0313|consen 293 -LKSTLTT-------------------------------------NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDG 334 (423)
T ss_pred -ceeeeec-------------------------------------CcceeEeecccccceeeecCCCCceeecCCCCCCC
Confidence 2222222 233444455543 689999999999999998632
Q ss_pred eEEecCcccccCCc-cEEEEEEeC-CcEEEEEEecCCCEEEEEECCCCc-eEEEEec-CCCEEEEEEcCc-EEEEEECCC
Q 000744 1191 TTFYAGTKKLLGKQ-TIHSLHMHN-GLLFAGGSSVDGTAGKVFSISSKT-AVGSFTT-GIDIQHLAVNSD-FIFTATKCG 1265 (1306)
Q Consensus 1191 ~~~~~~~~~l~gh~-~I~sl~~s~-~~~llas~s~Dg~~I~IWD~~t~~-~l~~l~~-~~~V~sla~spd-~Lasgs~Dg 1265 (1306)
-..- ..+.||. +|.++.|+| +...+++++.|+ ++++||+++.+ +++.+.+ ...|.++.|+.. .|++||.|+
T Consensus 335 s~v~---~s~~gH~nwVssvkwsp~~~~~~~S~S~D~-t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~IvSGGaD~ 410 (423)
T KOG0313|consen 335 SVVS---QSLIGHKNWVSSVKWSPTNEFQLVSGSYDN-TVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLIVSGGADN 410 (423)
T ss_pred ceeE---EeeecchhhhhheecCCCCceEEEEEecCC-eEEEEEeccCCCcceeeccCCceEEEEeccCCceEEeccCcc
Confidence 1111 1466888 999999995 456777888999 89999999877 8888885 456999999988 999999999
Q ss_pred cEEEEECC
Q 000744 1266 TIEVWLKE 1273 (1306)
Q Consensus 1266 ~I~IWd~~ 1273 (1306)
+|+|+.-.
T Consensus 411 ~l~i~~~~ 418 (423)
T KOG0313|consen 411 KLRIFKGS 418 (423)
T ss_pred eEEEeccc
Confidence 99998653
No 52
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.90 E-value=2.3e-22 Score=244.69 Aligned_cols=250 Identities=24% Similarity=0.319 Sum_probs=214.1
Q ss_pred cCCCCEEEEEEeCCEEEEEECCCcEEEEeCCCCccceEEE-EcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCce
Q 000744 1034 STNGEVLSLIHLKGRVLSSHSDGTIKMWDSGKRVLRLIQE-VREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEI 1112 (1306)
Q Consensus 1034 ~H~~~V~sl~fspd~LaSgs~Dg~I~vWd~~t~~~~~i~~-l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~ 1112 (1306)
.|...+.+..|+++++++++.|++|++||..++ ..+.. +.||.+.|++++|..-+.++++|+.|++++|||..++
T Consensus 206 ~~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~--~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg-- 281 (537)
T KOG0274|consen 206 TDDHVVLCLQLHDGFFKSGSDDSTLHLWDLNNG--YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG-- 281 (537)
T ss_pred cCcchhhhheeecCeEEecCCCceeEEeecccc--eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC--
Confidence 467889999999999999999999999999998 67777 9999999999999877889999999999999999998
Q ss_pred eEEEeec-CCCCeEEEEeCCcEEEEEcCCCeEEEEEecCC--EEEec-cCCCeEEEEEeCCEEEEEECCCcEEEEECCCC
Q 000744 1113 HCLQVHN-VKEAVHELTANAEIACFVSPATGVKVYNWSGA--IKHIN-FNKHVKSLVMTGDKLYCGCSGYSIQEVDLGNL 1188 (1306)
Q Consensus 1113 ~~i~~~~-~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~--~~l~~-~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~ 1188 (1306)
.|...+. |.+.|.++...+.....+.-+..|++|++++. ..+.. |..+|+++.++.+.+++|+.|++|++||+.++
T Consensus 282 ~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~ 361 (537)
T KOG0274|consen 282 ECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTG 361 (537)
T ss_pred cEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhhc
Confidence 6666654 77899999875555545455566999999944 34445 99999999999999999999999999999999
Q ss_pred ceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCC-ceEEEEecCCC-EEEEEEcCcEEEEEECCC
Q 000744 1189 TSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSK-TAVGSFTTGID-IQHLAVNSDFIFTATKCG 1265 (1306)
Q Consensus 1189 ~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~-~~l~~l~~~~~-V~sla~spd~Lasgs~Dg 1265 (1306)
+++.+ +.||. +|+++.+.+. ..+.+|+.|+ +|++||+.++ +++.++.+|.. |.++.+...+|++++.||
T Consensus 362 ~cl~s------l~gH~~~V~sl~~~~~-~~~~Sgs~D~-~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~ 433 (537)
T KOG0274|consen 362 KCLKS------LSGHTGRVYSLIVDSE-NRLLSGSLDT-TIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSADG 433 (537)
T ss_pred eeeee------ecCCcceEEEEEecCc-ceEEeeeecc-ceEeecCCchhhhhhhhcCCcccccccccccceeEeccccc
Confidence 99985 44777 9999988765 5556777897 8999999999 99999997766 667777777999999999
Q ss_pred cEEEEECCCCeEEEEEecccCCCCCCCeEEEEEc
Q 000744 1266 TIEVWLKERVTRVASVKANNSGGGHAKITCLGTG 1299 (1306)
Q Consensus 1266 ~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafS 1299 (1306)
+|++||.+++++++++.+ .|...|+.+++.
T Consensus 434 ~Ik~WD~~~~~~~~~~~~----~~~~~v~~l~~~ 463 (537)
T KOG0274|consen 434 TIKLWDAEEGECLRTLEG----RHVGGVSALALG 463 (537)
T ss_pred cEEEeecccCceeeeecc----CCcccEEEeecC
Confidence 999999999999999984 245788888775
No 53
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=7.2e-23 Score=244.93 Aligned_cols=237 Identities=20% Similarity=0.293 Sum_probs=189.0
Q ss_pred cccc-cccccccccc-----cEEEEEeCCCcEEEEeCCC-----------------------------------------
Q 000744 995 RKLK-KYSAVVTDIQ-----KALMNLSSVNATELWHCNE----------------------------------------- 1027 (1306)
Q Consensus 995 ~~l~-ghs~~V~~i~-----~~Lasgs~Dg~I~IWd~~~----------------------------------------- 1027 (1306)
..++ .|.+.|+++. +|||+||.||.|+||.+..
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 3455 8999999887 9999999999999997632
Q ss_pred ---------------------ceEEcccCCCCEEEEEEeCC-EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEE
Q 000744 1028 ---------------------VTELDSSTNGEVLSLIHLKG-RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLY 1085 (1306)
Q Consensus 1028 ---------------------~~~i~~~H~~~V~sl~fspd-~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~ 1085 (1306)
......||.+.|.+|.|+.+ +|+|+|.|.||++|++... +|+.+| .|.+-||||+
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~--~CL~~F-~HndfVTcVa 416 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRK--ECLKVF-SHNDFVTCVA 416 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCc--ceeeEE-ecCCeeEEEE
Confidence 00112479999999999985 9999999999999999988 899999 6999999999
Q ss_pred EcC-CCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEE
Q 000744 1086 VPS-SGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSL 1164 (1306)
Q Consensus 1086 fsp-dg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl 1164 (1306)
|+| |.++|+||+.||.||||++... +.+.-.+..+-|++++ +.|||+
T Consensus 417 FnPvDDryFiSGSLD~KvRiWsI~d~--~Vv~W~Dl~~lITAvc-------y~PdGk----------------------- 464 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVRLWSISDK--KVVDWNDLRDLITAVC-------YSPDGK----------------------- 464 (712)
T ss_pred ecccCCCcEeecccccceEEeecCcC--eeEeehhhhhhheeEE-------eccCCc-----------------------
Confidence 999 8899999999999999999986 3333344446777776 777777
Q ss_pred EEeCCEEEEEECCCcEEEEECCCCceeEEecCc----ccccCCccEEEEEEeCCc--EEEEEEecCCCEEEEEECCCCce
Q 000744 1165 VMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGT----KKLLGKQTIHSLHMHNGL--LFAGGSSVDGTAGKVFSISSKTA 1238 (1306)
Q Consensus 1165 ~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~----~~l~gh~~I~sl~~s~~~--~llas~s~Dg~~I~IWD~~t~~~ 1238 (1306)
+.++|+.+|.+++|+....+....+.-. ++..++ .|+.+.|.|+. .+++++ .|. .|||||.++..+
T Consensus 465 -----~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTS-nDS-rIRI~d~~~~~l 536 (712)
T KOG0283|consen 465 -----GAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTS-NDS-RIRIYDGRDKDL 536 (712)
T ss_pred -----eEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEec-CCC-ceEEEeccchhh
Confidence 7889999999999999988776654321 111222 79999997443 355554 487 799999999999
Q ss_pred EEEEecCC---CEEEEEEcCc--EEEEEECCCcEEEEECCC
Q 000744 1239 VGSFTTGI---DIQHLAVNSD--FIFTATKCGTIEVWLKER 1274 (1306)
Q Consensus 1239 l~~l~~~~---~V~sla~spd--~Lasgs~Dg~I~IWd~~t 1274 (1306)
+..|++.. .-....|+.| +|++|++|..|+||+...
T Consensus 537 v~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 537 VHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred hhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 99988532 2445667777 999999999999999843
No 54
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.4e-22 Score=222.79 Aligned_cols=263 Identities=13% Similarity=0.165 Sum_probs=210.7
Q ss_pred ceEEcccCCCCEEEEEEeCC--EEEEEECCCcEEEEeCCC-CccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEE
Q 000744 1028 VTELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDSGK-RVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRV 1104 (1306)
Q Consensus 1028 ~~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t-~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~V 1104 (1306)
..++...|++.|+-+.||++ +|||++.|.+..+|++.. ..++..+++.+|..+|..+.||||.+++++++.|..+++
T Consensus 216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l 295 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL 295 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence 34567899999999999986 999999999999999853 334678899999999999999999999999999999999
Q ss_pred EEcCCCceeEEEeecCCCCeEEEEe---CCcEEEEEcCCCeEEEEEecCCE-EEecc--CCCeEEEEEeCC--EEEEEEC
Q 000744 1105 WSIKPEEIHCLQVHNVKEAVHELTA---NAEIACFVSPATGVKVYNWSGAI-KHINF--NKHVKSLVMTGD--KLYCGCS 1176 (1306)
Q Consensus 1105 Wdi~~~~~~~i~~~~~~~~V~sl~~---~~~~v~~s~dg~~I~i~~~~~~~-~l~~~--~~~V~sl~~s~d--~L~sgs~ 1176 (1306)
||..+|.........+...+.+.+| ...+++.+||+. +..|+.+|.. .-|.. ...|.+++.++| ++++.+.
T Consensus 296 wDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~-i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~ 374 (519)
T KOG0293|consen 296 WDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRT-IIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTV 374 (519)
T ss_pred ccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCc-EEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEec
Confidence 9999996433333334578888887 445666677755 7788888654 23332 356888988855 7888899
Q ss_pred CCcEEEEECCCCceeEEecCcccccCCccEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEecCCC---EEEEEE
Q 000744 1177 GYSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFTTGID---IQHLAV 1253 (1306)
Q Consensus 1177 Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~~~~---V~sla~ 1253 (1306)
|..|++|+..+....... ..+.+|++...+.++.++...-.+. .|++||+.....+..+.+|.. |..-+|
T Consensus 375 d~~i~l~~~e~~~dr~li------se~~~its~~iS~d~k~~LvnL~~q-ei~LWDl~e~~lv~kY~Ghkq~~fiIrSCF 447 (519)
T KOG0293|consen 375 DKKIRLYNREARVDRGLI------SEEQPITSFSISKDGKLALVNLQDQ-EIHLWDLEENKLVRKYFGHKQGHFIIRSCF 447 (519)
T ss_pred ccceeeechhhhhhhccc------cccCceeEEEEcCCCcEEEEEcccC-eeEEeecchhhHHHHhhcccccceEEEecc
Confidence 999999998876655322 2334999999998777777766676 799999999888888886543 444456
Q ss_pred cCc---EEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCCC
Q 000744 1254 NSD---FIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDGH 1303 (1306)
Q Consensus 1254 spd---~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~ 1303 (1306)
... ++++||+|+.|+||+..+|+++.++.+ |...|++|+|+|...
T Consensus 448 gg~~~~fiaSGSED~kvyIWhr~sgkll~~LsG-----Hs~~vNcVswNP~~p 495 (519)
T KOG0293|consen 448 GGGNDKFIASGSEDSKVYIWHRISGKLLAVLSG-----HSKTVNCVSWNPADP 495 (519)
T ss_pred CCCCcceEEecCCCceEEEEEccCCceeEeecC-----CcceeeEEecCCCCH
Confidence 432 999999999999999999999999986 778999999999654
No 55
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.90 E-value=3.4e-23 Score=214.70 Aligned_cols=260 Identities=13% Similarity=0.142 Sum_probs=221.1
Q ss_pred EEcccCCCCEEEEEEeC---C--EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEE
Q 000744 1030 ELDSSTNGEVLSLIHLK---G--RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRV 1104 (1306)
Q Consensus 1030 ~i~~~H~~~V~sl~fsp---d--~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~V 1104 (1306)
.+-.+|+.+|..++|+| + +|++++.||.=.+-+-++| .-+.+|.+|++.|++..++.+...-+|++.|-+-+|
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tg--dwigtfeghkgavw~~~l~~na~~aasaaadftakv 85 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTG--DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKV 85 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCC--CcEEeeeccCcceeeeecCchhhhhhhhcccchhhh
Confidence 34568999999999997 3 8999999999999999999 779999999999999999999999999999999999
Q ss_pred EEcCCCceeEEEeecCCCCeEEEEe--CCcEEEEEcCCCeEEEEEecCC----EEEeccCCCeEEEEEe--CCEEEEEEC
Q 000744 1105 WSIKPEEIHCLQVHNVKEAVHELTA--NAEIACFVSPATGVKVYNWSGA----IKHINFNKHVKSLVMT--GDKLYCGCS 1176 (1306)
Q Consensus 1105 Wdi~~~~~~~i~~~~~~~~V~sl~~--~~~~v~~s~dg~~I~i~~~~~~----~~l~~~~~~V~sl~~s--~d~L~sgs~ 1176 (1306)
||.-++ ..+..+.|+.-|..++| +...+......+.+++++.+.. ..+-+|.+.|..+.|. ...|++.+.
T Consensus 86 w~a~tg--delhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSad 163 (334)
T KOG0278|consen 86 WDAVTG--DELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSAD 163 (334)
T ss_pred hhhhhh--hhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeecc
Confidence 999998 55667778889999997 3333334444455677776632 3455789999999997 336888899
Q ss_pred CCcEEEEECCCCceeEEecCcccccCCccEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEecCCCEEEEEEcCc
Q 000744 1177 GYSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFTTGIDIQHLAVNSD 1256 (1306)
Q Consensus 1177 Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~~~~V~sla~spd 1256 (1306)
|++||+||.++++.++.+. -..+|+++.+++++.++..+ +|+.|++||..+...++.+.-...|.+...+|+
T Consensus 164 d~tVRLWD~rTgt~v~sL~------~~s~VtSlEvs~dG~ilTia--~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~ 235 (334)
T KOG0278|consen 164 DKTVRLWDHRTGTEVQSLE------FNSPVTSLEVSQDGRILTIA--YGSSVKFWDAKSFGLLKSYKMPCNVESASLHPK 235 (334)
T ss_pred CCceEEEEeccCcEEEEEe------cCCCCcceeeccCCCEEEEe--cCceeEEeccccccceeeccCccccccccccCC
Confidence 9999999999999988654 22289999999999888876 666899999999999999988888999999998
Q ss_pred --EEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCCCcc
Q 000744 1257 --FIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDGHPY 1305 (1306)
Q Consensus 1257 --~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~~L 1305 (1306)
++++|++|+.++.||..||+.+..+. .+|.++|.||.|+|||..-
T Consensus 236 k~~fVaGged~~~~kfDy~TgeEi~~~n----kgh~gpVhcVrFSPdGE~y 282 (334)
T KOG0278|consen 236 KEFFVAGGEDFKVYKFDYNTGEEIGSYN----KGHFGPVHCVRFSPDGELY 282 (334)
T ss_pred CceEEecCcceEEEEEeccCCceeeecc----cCCCCceEEEEECCCCcee
Confidence 99999999999999999999998874 4588999999999999753
No 56
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.90 E-value=2.5e-22 Score=214.01 Aligned_cols=230 Identities=16% Similarity=0.197 Sum_probs=184.7
Q ss_pred eEEcccCCCCEEEEEEeCC--EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 000744 1029 TELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWS 1106 (1306)
Q Consensus 1029 ~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWd 1106 (1306)
.....+|++.|..+.|+|+ .|+||+.|..|.+|++.... +-...+++|+++|..+.|.+|++.++|+|.|++|+.||
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc-eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC-ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc-cceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 3456799999999999996 99999999999999986542 66788899999999999999999999999999999999
Q ss_pred cCCCceeEEEeec-CCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCCEEEEEECCCcEEEEEC
Q 000744 1107 IKPEEIHCLQVHN-VKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGDKLYCGCSGYSIQEVDL 1185 (1306)
Q Consensus 1107 i~~~~~~~i~~~~-~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl 1185 (1306)
+++| +++..+. |..-|.++. |.. +.+..+.+|+.|+++++||+
T Consensus 119 ~~tG--~~~rk~k~h~~~vNs~~---------p~r-------------------------rg~~lv~SgsdD~t~kl~D~ 162 (338)
T KOG0265|consen 119 AETG--KRIRKHKGHTSFVNSLD---------PSR-------------------------RGPQLVCSGSDDGTLKLWDI 162 (338)
T ss_pred cccc--eeeehhccccceeeecC---------ccc-------------------------cCCeEEEecCCCceEEEEee
Confidence 9998 4555443 334444432 111 11235789999999999999
Q ss_pred CCCceeEEecCcccccCCccEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEecC-CCEEEEEEcCc--EEEEEE
Q 000744 1186 GNLTSTTFYAGTKKLLGKQTIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFTTG-IDIQHLAVNSD--FIFTAT 1262 (1306)
Q Consensus 1186 ~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~~-~~V~sla~spd--~Lasgs 1262 (1306)
++...++++.. ..+++++.|.+...-+.+|+.|+ .|++||++.+...+++.+| ..|+.+..+++ ++.+-+
T Consensus 163 R~k~~~~t~~~------kyqltAv~f~d~s~qv~sggIdn-~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsns 235 (338)
T KOG0265|consen 163 RKKEAIKTFEN------KYQLTAVGFKDTSDQVISGGIDN-DIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNS 235 (338)
T ss_pred cccchhhcccc------ceeEEEEEecccccceeeccccC-ceeeeccccCcceEEeecccCceeeEEeccCCCcccccc
Confidence 99888876542 22899999986665555666788 7999999999999999975 45999999998 999999
Q ss_pred CCCcEEEEECCC----CeEEEEEecccCCCCC--CCeEEEEEcCCCCcc
Q 000744 1263 KCGTIEVWLKER----VTRVASVKANNSGGGH--AKITCLGTGVDGHPY 1305 (1306)
Q Consensus 1263 ~Dg~I~IWd~~t----g~~l~~l~~~~~~~~~--~~V~slafSpdg~~L 1305 (1306)
.|.++++||++- ..+++.+.+ ..|. .....++|+|+++.+
T Consensus 236 Md~tvrvwd~rp~~p~~R~v~if~g---~~hnfeknlL~cswsp~~~~i 281 (338)
T KOG0265|consen 236 MDNTVRVWDVRPFAPSQRCVKIFQG---HIHNFEKNLLKCSWSPNGTKI 281 (338)
T ss_pred ccceEEEEEecccCCCCceEEEeec---chhhhhhhcceeeccCCCCcc
Confidence 999999999874 345888886 3343 345677899998865
No 57
>PTZ00421 coronin; Provisional
Probab=99.90 E-value=2.8e-21 Score=235.00 Aligned_cols=223 Identities=12% Similarity=0.125 Sum_probs=166.0
Q ss_pred EcccCCCCEEEEEEeC-C--EEEEEECCCcEEEEeCCCCc-----cceEEEEcccCccEEEEEEcCCC-CEEEEEeCCCc
Q 000744 1031 LDSSTNGEVLSLIHLK-G--RVLSSHSDGTIKMWDSGKRV-----LRLIQEVREHTRAVTCLYVPSSG-DKLYSGSLDKT 1101 (1306)
Q Consensus 1031 i~~~H~~~V~sl~fsp-d--~LaSgs~Dg~I~vWd~~t~~-----~~~i~~l~~H~~~V~sl~fspdg-~~L~Sgs~Dgt 1101 (1306)
+..+|.+.|++++|+| + +|++|+.||+|++||+.++. ..++..+.+|...|.+++|+|++ ++|++|+.|++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 4568999999999998 3 89999999999999997642 13577889999999999999975 79999999999
Q ss_pred EEEEEcCCCceeEEEee-cCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCCEEEEEECCCcE
Q 000744 1102 IRVWSIKPEEIHCLQVH-NVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGDKLYCGCSGYSI 1180 (1306)
Q Consensus 1102 I~VWdi~~~~~~~i~~~-~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~Dg~I 1180 (1306)
|+|||+.+++ .+..+ .|...|.+++ |+++|. .|++|+.|++|
T Consensus 150 VrIWDl~tg~--~~~~l~~h~~~V~sla-------~spdG~----------------------------lLatgs~Dg~I 192 (493)
T PTZ00421 150 VNVWDVERGK--AVEVIKCHSDQITSLE-------WNLDGS----------------------------LLCTTSKDKKL 192 (493)
T ss_pred EEEEECCCCe--EEEEEcCCCCceEEEE-------EECCCC----------------------------EEEEecCCCEE
Confidence 9999999873 22222 2344555555 455544 78999999999
Q ss_pred EEEECCCCceeEEecCcccccCCc--cEEEEEEeCC-cEEEEEE---ecCCCEEEEEECCCCc-eEEEEec--CCCEEEE
Q 000744 1181 QEVDLGNLTSTTFYAGTKKLLGKQ--TIHSLHMHNG-LLFAGGS---SVDGTAGKVFSISSKT-AVGSFTT--GIDIQHL 1251 (1306)
Q Consensus 1181 ~iwDl~~~~~~~~~~~~~~l~gh~--~I~sl~~s~~-~~llas~---s~Dg~~I~IWD~~t~~-~l~~l~~--~~~V~sl 1251 (1306)
++||+++++.+..+. +|. .+..+.|.++ +.++++| +.|+ .|++||+++.. .+..... ...+...
T Consensus 193 rIwD~rsg~~v~tl~------~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr-~VklWDlr~~~~p~~~~~~d~~~~~~~~ 265 (493)
T PTZ00421 193 NIIDPRDGTIVSSVE------AHASAKSQRCLWAKRKDLIITLGCSKSQQR-QIMLWDTRKMASPYSTVDLDQSSALFIP 265 (493)
T ss_pred EEEECCCCcEEEEEe------cCCCCcceEEEEcCCCCeEEEEecCCCCCC-eEEEEeCCCCCCceeEeccCCCCceEEE
Confidence 999999998877554 444 3345667644 4555443 2356 89999998754 4444432 2346666
Q ss_pred EEcCc--EEEEEE-CCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCC
Q 000744 1252 AVNSD--FIFTAT-KCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVD 1301 (1306)
Q Consensus 1252 a~spd--~Lasgs-~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpd 1301 (1306)
.|+++ ++++|+ .||.|++||+.+++.+..... .+..++.+++|.|.
T Consensus 266 ~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~----~s~~~~~g~~~~pk 314 (493)
T PTZ00421 266 FFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSY----SSVEPHKGLCMMPK 314 (493)
T ss_pred EEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeec----cCCCCCcceEeccc
Confidence 78887 777776 599999999999988777652 23456788888875
No 58
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.90 E-value=3.8e-22 Score=209.23 Aligned_cols=260 Identities=17% Similarity=0.206 Sum_probs=208.2
Q ss_pred EcccCCCCEEEEEEeC--CEEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 000744 1031 LDSSTNGEVLSLIHLK--GRVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIK 1108 (1306)
Q Consensus 1031 i~~~H~~~V~sl~fsp--d~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~ 1108 (1306)
...+|..+++.|.|+. |+|+|++.|.++.||-..+| +.+-++.||++.|+|++.+.+.+.+++|+.|.++++||+.
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG--erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG--ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCC--ceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence 4578999999999996 59999999999999999888 8999999999999999999999999999999999999999
Q ss_pred CCceeEEEeecCCCCeEEEEe--CCcEEEEEcCCC-----eEEEEEecC----------CEEEeccCCCeEEEEEe--CC
Q 000744 1109 PEEIHCLQVHNVKEAVHELTA--NAEIACFVSPAT-----GVKVYNWSG----------AIKHINFNKHVKSLVMT--GD 1169 (1306)
Q Consensus 1109 ~~~~~~i~~~~~~~~V~sl~~--~~~~v~~s~dg~-----~I~i~~~~~----------~~~l~~~~~~V~sl~~s--~d 1169 (1306)
+| +++.....+.+|..+.| .++++.++.|.. .|.+++... ..++..+.+.++.+-|. ++
T Consensus 83 tG--k~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~ 160 (327)
T KOG0643|consen 83 TG--KQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE 160 (327)
T ss_pred CC--cEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC
Confidence 99 56666666789999997 556666655532 244555441 23445577889999998 45
Q ss_pred EEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEecCCCE
Q 000744 1170 KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFTTGIDI 1248 (1306)
Q Consensus 1170 ~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~~~~V 1248 (1306)
+|++|..||.|..||+++|+.... ....|. .|+.+.++++..+.+++|.|. +-++||+.+-++++++....+|
T Consensus 161 ~ii~Ghe~G~is~~da~~g~~~v~-----s~~~h~~~Ind~q~s~d~T~FiT~s~Dt-takl~D~~tl~v~Kty~te~Pv 234 (327)
T KOG0643|consen 161 TIIAGHEDGSISIYDARTGKELVD-----SDEEHSSKINDLQFSRDRTYFITGSKDT-TAKLVDVRTLEVLKTYTTERPV 234 (327)
T ss_pred EEEEecCCCcEEEEEcccCceeee-----chhhhccccccccccCCcceEEecccCc-cceeeeccceeeEEEeeecccc
Confidence 899999999999999999865542 233566 999999999999999999998 8999999999999999999999
Q ss_pred EEEEEcCc--EEEEEECCCcEEE--------------EECCCCeEEEEEecccCCCCCCCeEEEEEcCCCCcc
Q 000744 1249 QHLAVNSD--FIFTATKCGTIEV--------------WLKERVTRVASVKANNSGGGHAKITCLGTGVDGHPY 1305 (1306)
Q Consensus 1249 ~sla~spd--~Lasgs~Dg~I~I--------------Wd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~~L 1305 (1306)
++.+++|. .++.|+...---| |++-..+.+...++ |-++|++++|+|||+-.
T Consensus 235 N~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkG-----HFGPINsvAfhPdGksY 302 (327)
T KOG0643|consen 235 NTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKG-----HFGPINSVAFHPDGKSY 302 (327)
T ss_pred cceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccc-----cccCcceeEECCCCccc
Confidence 99999996 6666554322222 22212233444443 66899999999999853
No 59
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=6.3e-22 Score=211.00 Aligned_cols=244 Identities=18% Similarity=0.245 Sum_probs=186.6
Q ss_pred cEEEEEeCCCcEEEEeCCCc----eEEcccCCCCEEEEEEeCC--EEEEEECCCcEEEEeCCCCccceEEEEcccCccEE
Q 000744 1009 KALMNLSSVNATELWHCNEV----TELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVT 1082 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~----~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~ 1082 (1306)
.+++.||.||+||+|+++.. .+....|.++|.+++|+.+ .+++|+.|+.+++||+.++ ....+..|.++|.
T Consensus 41 ~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~---Q~~~v~~Hd~pvk 117 (347)
T KOG0647|consen 41 NLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG---QVSQVAAHDAPVK 117 (347)
T ss_pred ceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC---Ceeeeeeccccee
Confidence 57889999999999999752 2344679999999999986 9999999999999999998 3566778999999
Q ss_pred EEEEcCCCC--EEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCC
Q 000744 1083 CLYVPSSGD--KLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKH 1160 (1306)
Q Consensus 1083 sl~fspdg~--~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~ 1160 (1306)
++.|-+... .|+|||.|++||.||++.. ..+......+.++++.
T Consensus 118 t~~wv~~~~~~cl~TGSWDKTlKfWD~R~~--~pv~t~~LPeRvYa~D-------------------------------- 163 (347)
T KOG0647|consen 118 TCHWVPGMNYQCLVTGSWDKTLKFWDTRSS--NPVATLQLPERVYAAD-------------------------------- 163 (347)
T ss_pred EEEEecCCCcceeEecccccceeecccCCC--Ceeeeeeccceeeehh--------------------------------
Confidence 999988655 8999999999999999986 2333333334444433
Q ss_pred eEEEEEeCCEEEEEECCCcEEEEECCCCceeEEecCcccccC-Cc-cEEEEEEe-CCcEEEEEEecCCCEEEEEECCCC-
Q 000744 1161 VKSLVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLG-KQ-TIHSLHMH-NGLLFAGGSSVDGTAGKVFSISSK- 1236 (1306)
Q Consensus 1161 V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~g-h~-~I~sl~~s-~~~~llas~s~Dg~~I~IWD~~t~- 1236 (1306)
.-...++++..+..|.+|+++++.....- +.. -. .+++|+.. +...+ +-|+.+| .+-|..+..+
T Consensus 164 -----v~~pm~vVata~r~i~vynL~n~~te~k~-----~~SpLk~Q~R~va~f~d~~~~-alGsiEG-rv~iq~id~~~ 231 (347)
T KOG0647|consen 164 -----VLYPMAVVATAERHIAVYNLENPPTEFKR-----IESPLKWQTRCVACFQDKDGF-ALGSIEG-RVAIQYIDDPN 231 (347)
T ss_pred -----ccCceeEEEecCCcEEEEEcCCCcchhhh-----hcCcccceeeEEEEEecCCce-Eeeeecc-eEEEEecCCCC
Confidence 33346788889999999999876543311 111 11 78888876 33334 3445688 6888888776
Q ss_pred -ceEEEEecCC----------CEEEEEEcCc--EEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCCC
Q 000744 1237 -TAVGSFTTGI----------DIQHLAVNSD--FIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDGH 1303 (1306)
Q Consensus 1237 -~~l~~l~~~~----------~V~sla~spd--~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~ 1303 (1306)
+.-.+|+.|. .|++|+|+|. .|+|++.||+..+||-.....+++.+. |..+|++.+|+.+|.
T Consensus 232 ~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~-----~~qpItcc~fn~~G~ 306 (347)
T KOG0647|consen 232 PKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSET-----HPQPITCCSFNRNGS 306 (347)
T ss_pred ccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCc-----CCCccceeEecCCCC
Confidence 3344554221 2788999998 999999999999999998888887764 678999999999999
Q ss_pred ccC
Q 000744 1304 PYK 1306 (1306)
Q Consensus 1304 ~La 1306 (1306)
++|
T Consensus 307 ifa 309 (347)
T KOG0647|consen 307 IFA 309 (347)
T ss_pred EEE
Confidence 875
No 60
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.89 E-value=1.5e-21 Score=228.31 Aligned_cols=285 Identities=18% Similarity=0.240 Sum_probs=218.1
Q ss_pred cEEEEEeCCCcEEEEeCC--CceEEcccCCCCEEEEEEeC--CEEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEE
Q 000744 1009 KALMNLSSVNATELWHCN--EVTELDSSTNGEVLSLIHLK--GRVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCL 1084 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~--~~~~i~~~H~~~V~sl~fsp--d~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl 1084 (1306)
-+||.|..||.|+||+.. .......+|+..|+++.|+. ..|+|||.|+.|.+||+-.. .-...++||++.|+..
T Consensus 78 l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E--~Gl~rL~GHkd~iT~~ 155 (888)
T KOG0306|consen 78 LLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGE--EGLFRLRGHKDSITQA 155 (888)
T ss_pred ceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccc--eeeEEeecchHHHhHH
Confidence 568999999999999998 56666789999999999997 49999999999999999766 5678899999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEee-cCCCCeEEEEeCC-cEEEEEcCCCeEEEEEec-------------
Q 000744 1085 YVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVH-NVKEAVHELTANA-EIACFVSPATGVKVYNWS------------- 1149 (1306)
Q Consensus 1085 ~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~-~~~~~V~sl~~~~-~~v~~s~dg~~I~i~~~~------------- 1149 (1306)
-|..+.++++|.|.|+.|++||+.+. .|+.++ .|.+.|+.+++.+ ..+.+..++ .+.+|...
T Consensus 156 ~F~~~~~~lvS~sKDs~iK~WdL~tq--hCf~Thvd~r~Eiw~l~~~~~~lvt~~~ds-e~~v~~L~~~~D~~~~~~~~s 232 (888)
T KOG0306|consen 156 LFLNGDSFLVSVSKDSMIKFWDLETQ--HCFETHVDHRGEIWALVLDEKLLVTAGTDS-ELKVWELAFEDDEKETNRYIS 232 (888)
T ss_pred hccCCCeEEEEeccCceEEEEecccc--eeeeEEecccceEEEEEEecceEEEEecCC-ceEEEEeecccccccccccce
Confidence 99988899999999999999999997 777765 5778898888855 334444443 36666651
Q ss_pred ----C---------CEE---------------------------------------------------------------
Q 000744 1150 ----G---------AIK--------------------------------------------------------------- 1153 (1306)
Q Consensus 1150 ----~---------~~~--------------------------------------------------------------- 1153 (1306)
| .+.
T Consensus 233 ~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~ 312 (888)
T KOG0306|consen 233 TKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIK 312 (888)
T ss_pred eeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHH
Confidence 0 000
Q ss_pred --------------------------------------------------------EeccCCCeEEEEEeCCEEE-EEEC
Q 000744 1154 --------------------------------------------------------HINFNKHVKSLVMTGDKLY-CGCS 1176 (1306)
Q Consensus 1154 --------------------------------------------------------l~~~~~~V~sl~~s~d~L~-sgs~ 1176 (1306)
+.+|...|.+++++.+.++ ..+.
T Consensus 313 r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga 392 (888)
T KOG0306|consen 313 RLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA 392 (888)
T ss_pred HHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC
Confidence 0012345677777766543 3344
Q ss_pred CCcEEEEECCCCceeEEecCcccccCCccEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEe-cCCCEEEEEEcC
Q 000744 1177 GYSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFT-TGIDIQHLAVNS 1255 (1306)
Q Consensus 1177 Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~-~~~~V~sla~sp 1255 (1306)
.+.|++|+..+.+++.++... .+.+..|-|+..+++.|...| .+.+||+.+...+.+++ |.+.|++++.+|
T Consensus 393 ~~SikiWn~~t~kciRTi~~~-------y~l~~~Fvpgd~~Iv~G~k~G-el~vfdlaS~~l~Eti~AHdgaIWsi~~~p 464 (888)
T KOG0306|consen 393 GESIKIWNRDTLKCIRTITCG-------YILASKFVPGDRYIVLGTKNG-ELQVFDLASASLVETIRAHDGAIWSISLSP 464 (888)
T ss_pred CCcEEEEEccCcceeEEeccc-------cEEEEEecCCCceEEEeccCC-ceEEEEeehhhhhhhhhccccceeeeeecC
Confidence 678999999999998876532 677788888888888886666 79999999988888887 556799999999
Q ss_pred c--EEEEEECCCcEEEEECCC-----CeEEEEEec--ccCCCCCCCeEEEEEcCCCCccC
Q 000744 1256 D--FIFTATKCGTIEVWLKER-----VTRVASVKA--NNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1256 d--~Lasgs~Dg~I~IWd~~t-----g~~l~~l~~--~~~~~~~~~V~slafSpdg~~La 1306 (1306)
| .++|||.|.+|++||..- |..-+.+.. .....-.+.|.|+.+||||++||
T Consensus 465 D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~La 524 (888)
T KOG0306|consen 465 DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLA 524 (888)
T ss_pred CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEE
Confidence 9 999999999999999741 211111211 00001236899999999999986
No 61
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.89 E-value=1.7e-21 Score=203.92 Aligned_cols=258 Identities=13% Similarity=0.141 Sum_probs=210.0
Q ss_pred cccccccccccccc-----cEEEEEeCCCcEEEEeCCCc----eEEcccCCCCEEEEEEeC---CEEEEEECCCcEEEEe
Q 000744 995 RKLKKYSAVVTDIQ-----KALMNLSSVNATELWHCNEV----TELDSSTNGEVLSLIHLK---GRVLSSHSDGTIKMWD 1062 (1306)
Q Consensus 995 ~~l~ghs~~V~~i~-----~~Lasgs~Dg~I~IWd~~~~----~~i~~~H~~~V~sl~fsp---d~LaSgs~Dg~I~vWd 1062 (1306)
+.+++|...|.++. ..|++|+.|+++++|++... .....+|.+.|-.++|+| +.+++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 55666766666655 88999999999999999753 334578999999999986 5999999999999999
Q ss_pred CCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEe-CCcEEEEEcCC-
Q 000744 1063 SGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTA-NAEIACFVSPA- 1140 (1306)
Q Consensus 1063 ~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~-~~~~v~~s~dg- 1140 (1306)
+..+ +++..+....+.| -+.|+|+|++++.|+.|..|...|.++. +.....+.+..+..+.| +..-++|..+|
T Consensus 94 ~r~~--k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~--~~~~~~~~~~e~ne~~w~~~nd~Fflt~Gl 168 (313)
T KOG1407|consen 94 IRSG--KCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTY--KIVNEEQFKFEVNEISWNNSNDLFFLTNGL 168 (313)
T ss_pred eccC--cEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEeccc--ceeehhcccceeeeeeecCCCCEEEEecCC
Confidence 9999 8888886544444 5789999999999999999999999986 44444444566777777 33334444444
Q ss_pred CeEEEEEecCC---EEEeccCCCeEEEEEeCC--EEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeCC
Q 000744 1141 TGVKVYNWSGA---IKHINFNKHVKSLVMTGD--KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNG 1214 (1306)
Q Consensus 1141 ~~I~i~~~~~~---~~l~~~~~~V~sl~~s~d--~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~ 1214 (1306)
..|.+..+... ..+..|+....||.|+|+ ++++|+.|..+.+||+...-+++.|+ .+. +|+.+.|+-+
T Consensus 169 G~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~is------RldwpVRTlSFS~d 242 (313)
T KOG1407|consen 169 GCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCIS------RLDWPVRTLSFSHD 242 (313)
T ss_pred ceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeec------cccCceEEEEeccC
Confidence 45777776633 334468889999999976 89999999999999999988887654 456 9999999999
Q ss_pred cEEEEEEecCCCEEEEEECCCCceEEEEecCCCEEEEEEcCc--EEEEEECC
Q 000744 1215 LLFAGGSSVDGTAGKVFSISSKTAVGSFTTGIDIQHLAVNSD--FIFTATKC 1264 (1306)
Q Consensus 1215 ~~llas~s~Dg~~I~IWD~~t~~~l~~l~~~~~V~sla~spd--~Lasgs~D 1264 (1306)
+.+++++|+|- .|-|=++.+|..+..+++.++.+.|+|+|. +|+-+++|
T Consensus 243 g~~lASaSEDh-~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 243 GRMLASASEDH-FIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred cceeeccCccc-eEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecC
Confidence 99999999888 899999999999999999999999999999 66666655
No 62
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.89 E-value=5.8e-22 Score=230.69 Aligned_cols=266 Identities=18% Similarity=0.226 Sum_probs=213.5
Q ss_pred hccccccccccccccccc----cEEEEEeCCCcEEEEeCCC----ceEEcccCCCCEEE-EEEeC---CEEEEEECCCcE
Q 000744 991 YGTLRKLKKYSAVVTDIQ----KALMNLSSVNATELWHCNE----VTELDSSTNGEVLS-LIHLK---GRVLSSHSDGTI 1058 (1306)
Q Consensus 991 ~~~l~~l~ghs~~V~~i~----~~Lasgs~Dg~I~IWd~~~----~~~i~~~H~~~V~s-l~fsp---d~LaSgs~Dg~I 1058 (1306)
++.-+.+.||...|..+. ..++++|.||++++|+... ..+...+|.+.|.+ ++|-+ ..+++|+.|++|
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i 83 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI 83 (745)
T ss_pred ceeEEEeccCccchheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceE
Confidence 345678899998776654 5699999999999999864 23445678888877 88875 379999999999
Q ss_pred EEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEe-CCcEEEEE
Q 000744 1059 KMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTA-NAEIACFV 1137 (1306)
Q Consensus 1059 ~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~-~~~~v~~s 1137 (1306)
.+|...+. .++.++++|+..|+|++...++. ++|||.|.|++||....-. .....|...|+++.+ +...+...
T Consensus 84 ~v~~~~~~--~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~---~~l~gH~asVWAv~~l~e~~~vTg 157 (745)
T KOG0301|consen 84 IVFKLSQA--EPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELV---YSLQGHTASVWAVASLPENTYVTG 157 (745)
T ss_pred EEEecCCC--CchhhhhccccceeeeecCCcCc-eEecccccceEEecchhhh---cccCCcchheeeeeecCCCcEEec
Confidence 99999998 89999999999999999877776 9999999999999876531 113457799999987 33344444
Q ss_pred cCCCeEEEEEecCCEE-EeccCCCeEEEEEeCC-EEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEe-C
Q 000744 1138 SPATGVKVYNWSGAIK-HINFNKHVKSLVMTGD-KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMH-N 1213 (1306)
Q Consensus 1138 ~dg~~I~i~~~~~~~~-l~~~~~~V~sl~~s~d-~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s-~ 1213 (1306)
..++.|++|.-+...+ +.+|.+.|..+++-++ .+++++.||.|+.|++ +|.++.. +.||+ .|+++... +
T Consensus 158 saDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~------~~ghtn~vYsis~~~~ 230 (745)
T KOG0301|consen 158 SADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLE------MHGHTNFVYSISMALS 230 (745)
T ss_pred cCcceeeeccCCchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeee------eeccceEEEEEEecCC
Confidence 4445599998765544 4579999999999987 8999999999999999 6677664 44777 89999965 5
Q ss_pred CcEEEEEEecCCCEEEEEECCCCceEEEEecC-CCEEEEEEcCc-EEEEEECCCcEEEEECC
Q 000744 1214 GLLFAGGSSVDGTAGKVFSISSKTAVGSFTTG-IDIQHLAVNSD-FIFTATKCGTIEVWLKE 1273 (1306)
Q Consensus 1214 ~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~~-~~V~sla~spd-~Lasgs~Dg~I~IWd~~ 1273 (1306)
++.++ ++++|+ +++||+.. .+...+.+. ..|+++.+-++ -|++|++||.|+||...
T Consensus 231 ~~~Iv-s~gEDr-tlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 231 DGLIV-STGEDR-TLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred CCeEE-EecCCc-eEEEeecC--ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEec
Confidence 55555 555788 89999976 888888864 47999988766 89999999999999876
No 63
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.89 E-value=1.2e-22 Score=228.32 Aligned_cols=265 Identities=14% Similarity=0.168 Sum_probs=212.7
Q ss_pred EeCCCceEEcccCCCCEEEEEEeCC---EEEEEECCCcEEEEeCCC-CccceEEEEcccCccEEEEEEcCCCCEEEEEeC
Q 000744 1023 WHCNEVTELDSSTNGEVLSLIHLKG---RVLSSHSDGTIKMWDSGK-RVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSL 1098 (1306)
Q Consensus 1023 Wd~~~~~~i~~~H~~~V~sl~fspd---~LaSgs~Dg~I~vWd~~t-~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~ 1098 (1306)
+-.+.......+|+..|+++.|.|. +|++|+.|+.|+||++-. + .++++|.+|..+|..++|+++|..|+|+|.
T Consensus 201 ~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~--~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sf 278 (503)
T KOG0282|consen 201 YLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR--RCLRTFKGHRKPVRDASFNNCGTSFLSASF 278 (503)
T ss_pred eccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc--ceehhhhcchhhhhhhhccccCCeeeeeec
Confidence 3334456677899999999999993 899999999999999976 5 899999999999999999999999999999
Q ss_pred CCcEEEEEcCCCceeEEEeecCCCCeEEEEe---CCcE-EEEEcCCCeEEEEEecCCEEEe---ccCCCeEEEEEeCC--
Q 000744 1099 DKTIRVWSIKPEEIHCLQVHNVKEAVHELTA---NAEI-ACFVSPATGVKVYNWSGAIKHI---NFNKHVKSLVMTGD-- 1169 (1306)
Q Consensus 1099 DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~---~~~~-v~~s~dg~~I~i~~~~~~~~l~---~~~~~V~sl~~s~d-- 1169 (1306)
|++|++||+++| ++...+.....++++.| +.++ ++...|++ |+.|+.+....+. .|-+.|..+.|-++
T Consensus 279 D~~lKlwDtETG--~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~k-i~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~ 355 (503)
T KOG0282|consen 279 DRFLKLWDTETG--QVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKK-IRQWDIRSGKVVQEYDRHLGAILDITFVDEGR 355 (503)
T ss_pred ceeeeeeccccc--eEEEEEecCCCceeeecCCCCCcEEEEecCCCc-EEEEeccchHHHHHHHhhhhheeeeEEccCCc
Confidence 999999999999 77777777788899997 3233 33444444 7777777433222 36789999999865
Q ss_pred EEEEEECCCcEEEEECCCCceeEEecCcccccCCccEEEEEEeCCcEEEEEEecCCCEEEEEECCCCc---eEEEEecC-
Q 000744 1170 KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKT---AVGSFTTG- 1245 (1306)
Q Consensus 1170 ~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~---~l~~l~~~- 1245 (1306)
++++.+.|+++++|+.+..-.++....+ ..| ...++..+|++.+++.-+.|+ .|.+|.+...- ....|.+|
T Consensus 356 rFissSDdks~riWe~~~~v~ik~i~~~---~~h-smP~~~~~P~~~~~~aQs~dN-~i~ifs~~~~~r~nkkK~feGh~ 430 (503)
T KOG0282|consen 356 RFISSSDDKSVRIWENRIPVPIKNIADP---EMH-TMPCLTLHPNGKWFAAQSMDN-YIAIFSTVPPFRLNKKKRFEGHS 430 (503)
T ss_pred eEeeeccCccEEEEEcCCCccchhhcch---hhc-cCcceecCCCCCeehhhccCc-eEEEEecccccccCHhhhhccee
Confidence 7999999999999999987666532211 011 567888899988888888888 89999875432 23344443
Q ss_pred --CCEEEEEEcCc--EEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCC
Q 000744 1246 --IDIQHLAVNSD--FIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDG 1302 (1306)
Q Consensus 1246 --~~V~sla~spd--~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg 1302 (1306)
+--..+.|||| +|++|+.||.+.+||.++-+.+..+++ |...+..+.|+|..
T Consensus 431 vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lka-----h~~~ci~v~wHP~e 486 (503)
T KOG0282|consen 431 VAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKA-----HDQPCIGVDWHPVE 486 (503)
T ss_pred ccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcccc-----CCcceEEEEecCCC
Confidence 23678899999 999999999999999999999999986 77899999999964
No 64
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=2e-22 Score=209.93 Aligned_cols=217 Identities=17% Similarity=0.212 Sum_probs=177.1
Q ss_pred cEEEEEeCCCcEEEEeCCC---ceEEcccCCCCEEEEEEeC---CEEEEEECCCcEEEEeCCCCccceEEEEcccCccEE
Q 000744 1009 KALMNLSSVNATELWHCNE---VTELDSSTNGEVLSLIHLK---GRVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVT 1082 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~---~~~i~~~H~~~V~sl~fsp---d~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~ 1082 (1306)
..+++++.||++++||... .......|...|.++.|++ +.++++|.||+||+|+..-+ ..++++.||...|.
T Consensus 74 ~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~--~Sv~Tf~gh~~~Iy 151 (311)
T KOG0277|consen 74 NQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP--NSVQTFNGHNSCIY 151 (311)
T ss_pred ceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC--cceEeecCCccEEE
Confidence 7899999999999999763 4555678999999999997 37888899999999999887 88999999999999
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCe
Q 000744 1083 CLYVPS-SGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHV 1161 (1306)
Q Consensus 1083 sl~fsp-dg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V 1161 (1306)
...|+| .++.++++|.||++++||++... +.+.... |...|
T Consensus 152 ~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g-k~~~i~a-------------------------------------h~~Ei 193 (311)
T KOG0277|consen 152 QAAFSPHIPNLFASASGDGTLRLWDVRSPG-KFMSIEA-------------------------------------HNSEI 193 (311)
T ss_pred EEecCCCCCCeEEEccCCceEEEEEecCCC-ceeEEEe-------------------------------------cccee
Confidence 999999 78899999999999999998642 1111111 33344
Q ss_pred EEEEEe---CCEEEEEECCCcEEEEECCCCc-eeEEecCcccccCCc-cEEEEEEeCC-cEEEEEEecCCCEEEEEECCC
Q 000744 1162 KSLVMT---GDKLYCGCSGYSIQEVDLGNLT-STTFYAGTKKLLGKQ-TIHSLHMHNG-LLFAGGSSVDGTAGKVFSISS 1235 (1306)
Q Consensus 1162 ~sl~~s---~d~L~sgs~Dg~I~iwDl~~~~-~~~~~~~~~~l~gh~-~I~sl~~s~~-~~llas~s~Dg~~I~IWD~~t 1235 (1306)
.|+.|+ ++.++||+.|+.|+.||+++-+ ++. .+.+|. .|+.+.|+|. ..++++++.|- +++|||...
T Consensus 194 l~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~------eL~gh~~AVRkvk~Sph~~~lLaSasYDm-T~riw~~~~ 266 (311)
T KOG0277|consen 194 LCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLF------ELNGHGLAVRKVKFSPHHASLLASASYDM-TVRIWDPER 266 (311)
T ss_pred EeecccccCCcEEEecCCCceEEEEehhhccccce------eecCCceEEEEEecCcchhhHhhhccccc-eEEeccccc
Confidence 555554 4579999999999999999854 333 467888 9999999965 46777888888 999999974
Q ss_pred -CceEEEEecCCC-EEEEEEcCc---EEEEEECCCcEEEEEC
Q 000744 1236 -KTAVGSFTTGID-IQHLAVNSD---FIFTATKCGTIEVWLK 1272 (1306)
Q Consensus 1236 -~~~l~~l~~~~~-V~sla~spd---~Lasgs~Dg~I~IWd~ 1272 (1306)
..++.+..+|+. |..+.|++- ++++++.|+.++||+.
T Consensus 267 ~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 267 QDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred chhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 446667777776 778888764 9999999999999985
No 65
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.89 E-value=1.5e-20 Score=245.53 Aligned_cols=279 Identities=14% Similarity=0.159 Sum_probs=204.7
Q ss_pred CCcEEEEeCCCceE-------EcccCCCCEEEEEEeCC--EEEEEECCCcEEEEeCCCCc------cceEEEEcccCccE
Q 000744 1017 VNATELWHCNEVTE-------LDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDSGKRV------LRLIQEVREHTRAV 1081 (1306)
Q Consensus 1017 Dg~I~IWd~~~~~~-------i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t~~------~~~i~~l~~H~~~V 1081 (1306)
+|.+++|+...... -...|.+.|++++|+++ ++++|+.||+|+|||..+.. ..+...+. +...|
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 56778888764221 12358999999999985 99999999999999975420 01233343 45689
Q ss_pred EEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeEEEee-cCCCCeEEEEeC---CcEEEEEcCCCeEEEEEecCC--EEE
Q 000744 1082 TCLYVPS-SGDKLYSGSLDKTIRVWSIKPEEIHCLQVH-NVKEAVHELTAN---AEIACFVSPATGVKVYNWSGA--IKH 1154 (1306)
Q Consensus 1082 ~sl~fsp-dg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~-~~~~~V~sl~~~---~~~v~~s~dg~~I~i~~~~~~--~~l 1154 (1306)
.+++|++ ++.+|++|+.||+|++||+.+++ .+..+ .|.+.|++++|+ +.++..+..+..|++|+.... ...
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~--~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~ 613 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQ--LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT 613 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCe--EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEE
Confidence 9999987 57899999999999999999873 33333 477899999993 234444444445999998743 223
Q ss_pred eccCCCeEEEEEe---CCEEEEEECCCcEEEEECCCCc-eeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEE
Q 000744 1155 INFNKHVKSLVMT---GDKLYCGCSGYSIQEVDLGNLT-STTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGK 1229 (1306)
Q Consensus 1155 ~~~~~~V~sl~~s---~d~L~sgs~Dg~I~iwDl~~~~-~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~ 1229 (1306)
+.+...|.++.|+ +..+++|+.||.|++||+++++ .... +.+|. .|.++.|.++..++ +++.|+ +|+
T Consensus 614 ~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~------~~~h~~~V~~v~f~~~~~lv-s~s~D~-~ik 685 (793)
T PLN00181 614 IKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCT------MIGHSKTVSYVRFVDSSTLV-SSSTDN-TLK 685 (793)
T ss_pred EecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceE------ecCCCCCEEEEEEeCCCEEE-EEECCC-EEE
Confidence 3455789999996 3479999999999999998765 3332 44677 99999998666554 555788 899
Q ss_pred EEECCC------CceEEEEecC-CCEEEEEEcCc--EEEEEECCCcEEEEECCCCeEEEEEeccc--------CCCCCCC
Q 000744 1230 VFSISS------KTAVGSFTTG-IDIQHLAVNSD--FIFTATKCGTIEVWLKERVTRVASVKANN--------SGGGHAK 1292 (1306)
Q Consensus 1230 IWD~~t------~~~l~~l~~~-~~V~sla~spd--~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~--------~~~~~~~ 1292 (1306)
+||+.. +..+.++.+| ..+++++|+++ +|++|+.||+|++|+......+..+.... ...+...
T Consensus 686 iWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 765 (793)
T PLN00181 686 LWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQF 765 (793)
T ss_pred EEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcE
Confidence 999974 3567788755 45889999987 99999999999999987765544332100 0113356
Q ss_pred eEEEEEcCCCCccC
Q 000744 1293 ITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1293 V~slafSpdg~~La 1306 (1306)
|.+++|+|+|.+|+
T Consensus 766 V~~v~ws~~~~~lv 779 (793)
T PLN00181 766 ISSVCWRGQSSTLV 779 (793)
T ss_pred EEEEEEcCCCCeEE
Confidence 99999999998764
No 66
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=2.1e-21 Score=208.11 Aligned_cols=246 Identities=19% Similarity=0.262 Sum_probs=193.2
Q ss_pred hccccccccccccccccc---cEEEEEeCCCcEEEEeCCC--ceEEcccCCCCEEEEEEeCC----EEEEEECCCcEEEE
Q 000744 991 YGTLRKLKKYSAVVTDIQ---KALMNLSSVNATELWHCNE--VTELDSSTNGEVLSLIHLKG----RVLSSHSDGTIKMW 1061 (1306)
Q Consensus 991 ~~~l~~l~ghs~~V~~i~---~~Lasgs~Dg~I~IWd~~~--~~~i~~~H~~~V~sl~fspd----~LaSgs~Dg~I~vW 1061 (1306)
+.++..++.|.+.++++. .++||||.|.+|+|||++. .......|.+.|+++.|.++ .|++|+.||.|.+|
T Consensus 33 l~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw 112 (362)
T KOG0294|consen 33 LKPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW 112 (362)
T ss_pred eeccccccccccceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence 456788999999999988 8999999999999999985 34456789999999999974 89999999999999
Q ss_pred eCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCC
Q 000744 1062 DSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPAT 1141 (1306)
Q Consensus 1062 d~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~ 1141 (1306)
+.... .++.++++|.+.|+.++.+|.|++-++.+.|+.++.||+-.|+...+..+. ...+.+. |++.|.
T Consensus 113 ~~~~W--~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~--~~at~v~-------w~~~Gd 181 (362)
T KOG0294|consen 113 RVGSW--ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK--NKATLVS-------WSPQGD 181 (362)
T ss_pred EcCCe--EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC--CcceeeE-------EcCCCC
Confidence 99887 999999999999999999999999999999999999999988532222222 2223355 455554
Q ss_pred e--------EEEEEecCCEEE--eccCCCeEEEEEe-CCEEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEE
Q 000744 1142 G--------VKVYNWSGAIKH--INFNKHVKSLVMT-GDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSL 1209 (1306)
Q Consensus 1142 ~--------I~i~~~~~~~~l--~~~~~~V~sl~~s-~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl 1209 (1306)
. |-+|..+....+ ......+.|+.|- ++.+++|+.|+.|.+||..++.+...|. +|. .|..+
T Consensus 182 ~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~------AH~~RVK~i 255 (362)
T KOG0294|consen 182 HFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFL------AHENRVKDI 255 (362)
T ss_pred EEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeee------cchhheeee
Confidence 3 334444422211 1234557788776 5689999999999999999988777554 666 89999
Q ss_pred EEe--CCcEEEEEEecCCCEEEEEECCCC-----ceEEEEecCCCEEEEEEc
Q 000744 1210 HMH--NGLLFAGGSSVDGTAGKVFSISSK-----TAVGSFTTGIDIQHLAVN 1254 (1306)
Q Consensus 1210 ~~s--~~~~llas~s~Dg~~I~IWD~~t~-----~~l~~l~~~~~V~sla~s 1254 (1306)
.+. |.+.++++.|.|| .|+|||++.. +.+..+..+..++|+...
T Consensus 256 ~~~~~~~~~~lvTaSSDG-~I~vWd~~~~~k~~~~~l~e~n~~~RltCl~~~ 306 (362)
T KOG0294|consen 256 ASYTNPEHEYLVTASSDG-FIKVWDIDMETKKRPTLLAELNTNVRLTCLRVK 306 (362)
T ss_pred EEEecCCceEEEEeccCc-eEEEEEccccccCCcceeEEeecCCccceeeeh
Confidence 863 7788999998899 8999999775 456666666677777653
No 67
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.88 E-value=1.3e-20 Score=223.09 Aligned_cols=304 Identities=15% Similarity=0.208 Sum_probs=233.7
Q ss_pred hccccccccccccccccc-----cEEEEEeCCCcEEEEeCCCceE-EcccC-CCCEEEEEEeCC---EEEEEECCCcEEE
Q 000744 991 YGTLRKLKKYSAVVTDIQ-----KALMNLSSVNATELWHCNEVTE-LDSST-NGEVLSLIHLKG---RVLSSHSDGTIKM 1060 (1306)
Q Consensus 991 ~~~l~~l~ghs~~V~~i~-----~~Lasgs~Dg~I~IWd~~~~~~-i~~~H-~~~V~sl~fspd---~LaSgs~Dg~I~v 1060 (1306)
.+.+.+++++...|+++. +.+|.|..+|+|.++|++.... +.+.| .+.|++++|..| .+++|+..|.+.+
T Consensus 192 ~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~ 271 (910)
T KOG1539|consen 192 GKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAF 271 (910)
T ss_pred CcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEE
Confidence 366888999988888876 8999999999999999986433 33455 499999999964 8999999999999
Q ss_pred EeCCCCccceEEEEc-ccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc--eeEEEe-ecCCCCeEEEEe-------
Q 000744 1061 WDSGKRVLRLIQEVR-EHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEE--IHCLQV-HNVKEAVHELTA------- 1129 (1306)
Q Consensus 1061 Wd~~t~~~~~i~~l~-~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~--~~~i~~-~~~~~~V~sl~~------- 1129 (1306)
||++.. +.+...+ .|.+.|+...|.|....+++.+.|+.+++|-.+++. .+.++. -+|..+..++.|
T Consensus 272 wDLe~k--kl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ 349 (910)
T KOG1539|consen 272 WDLEKK--KLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHF 349 (910)
T ss_pred EEcCCC--eeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEE
Confidence 999987 5665555 798999999999999999999999999999766433 122221 113333333333
Q ss_pred -------------------------------------------------------------CCcEEEEEcCCCeEEEEEe
Q 000744 1130 -------------------------------------------------------------NAEIACFVSPATGVKVYNW 1148 (1306)
Q Consensus 1130 -------------------------------------------------------------~~~~v~~s~dg~~I~i~~~ 1148 (1306)
-.++++.+.+......|++
T Consensus 350 ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~ 429 (910)
T KOG1539|consen 350 ILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNF 429 (910)
T ss_pred EEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEec
Confidence 1245555555555666666
Q ss_pred cCC---EEEeccC------CCeEEEEEe--CCEEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeCCcE
Q 000744 1149 SGA---IKHINFN------KHVKSLVMT--GDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGLL 1216 (1306)
Q Consensus 1149 ~~~---~~l~~~~------~~V~sl~~s--~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~ 1216 (1306)
... .....+. ..+++++.+ +++.+.|+..|+|-+|++++|-....|. .-+.|. +|+.++...-+.
T Consensus 430 ~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~---~~~ah~~~V~gla~D~~n~ 506 (910)
T KOG1539|consen 430 RNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFG---DSPAHKGEVTGLAVDGTNR 506 (910)
T ss_pred cCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccc---cCccccCceeEEEecCCCc
Confidence 632 1223333 567777776 7899999999999999999998887764 223666 999999997777
Q ss_pred EEEEEecCCCEEEEEECCCCce-----------------------------------------EEEEe-cCCCEEEEEEc
Q 000744 1217 FAGGSSVDGTAGKVFSISSKTA-----------------------------------------VGSFT-TGIDIQHLAVN 1254 (1306)
Q Consensus 1217 llas~s~Dg~~I~IWD~~t~~~-----------------------------------------l~~l~-~~~~V~sla~s 1254 (1306)
.+++++.+| .+++||..++.. ++.|. |+..|++++||
T Consensus 507 ~~vsa~~~G-ilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS 585 (910)
T KOG1539|consen 507 LLVSAGADG-ILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFS 585 (910)
T ss_pred eEEEccCcc-eEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeC
Confidence 777777788 899999876542 22233 34569999999
Q ss_pred Cc--EEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCCCccC
Q 000744 1255 SD--FIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1255 pd--~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~~La 1306 (1306)
|| +|++++.|++|++||+.++.++..+. -..+.+++.|||+|.+||
T Consensus 586 ~DgrWlisasmD~tIr~wDlpt~~lID~~~------vd~~~~sls~SPngD~LA 633 (910)
T KOG1539|consen 586 PDGRWLISASMDSTIRTWDLPTGTLIDGLL------VDSPCTSLSFSPNGDFLA 633 (910)
T ss_pred CCCcEEEEeecCCcEEEEeccCcceeeeEe------cCCcceeeEECCCCCEEE
Confidence 99 99999999999999999999999887 345899999999999986
No 68
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.88 E-value=4.6e-22 Score=206.33 Aligned_cols=275 Identities=17% Similarity=0.206 Sum_probs=227.9
Q ss_pred ccccccccccccccc--------cEEEEEeCCCcEEEEeCCC--ceEEcccCCCCEEEEEEeCC--EEEEEECCCcEEEE
Q 000744 994 LRKLKKYSAVVTDIQ--------KALMNLSSVNATELWHCNE--VTELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMW 1061 (1306)
Q Consensus 994 l~~l~ghs~~V~~i~--------~~Lasgs~Dg~I~IWd~~~--~~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vW 1061 (1306)
-.+..||+..|-++. -+|++++.||.=-+-+-++ -...+.+|++.|++...+.+ ..++++.|-+-++|
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw 86 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVW 86 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhh
Confidence 345678888776554 6799999999866665544 35567899999999999987 88899999999999
Q ss_pred eCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEe--CCcEEEEEcC
Q 000744 1062 DSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTA--NAEIACFVSP 1139 (1306)
Q Consensus 1062 d~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~--~~~~v~~s~d 1139 (1306)
|.-+| ..+++| .|+.-|.+++|+.|.++|++|+.++.+||+|++..+......-.|.+.|..+.| .++.+.-+.+
T Consensus 87 ~a~tg--delhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSad 163 (334)
T KOG0278|consen 87 DAVTG--DELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSAD 163 (334)
T ss_pred hhhhh--hhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeecc
Confidence 99999 788888 589999999999999999999999999999999876555555567799999998 5555555577
Q ss_pred CCeEEEEEecCC--EEEeccCCCeEEEEEeCC-EEEEEECCCcEEEEECCCCceeEEecCcccccCCccEEEEEEeCCcE
Q 000744 1140 ATGVKVYNWSGA--IKHINFNKHVKSLVMTGD-KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLL 1216 (1306)
Q Consensus 1140 g~~I~i~~~~~~--~~l~~~~~~V~sl~~s~d-~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~ 1216 (1306)
.+.|++|+.... ++.+..+.+|+++.++++ .+++....+.|.+||..+...++.+.-+. .|.+...+|+..
T Consensus 164 d~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~------nV~SASL~P~k~ 237 (334)
T KOG0278|consen 164 DKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPC------NVESASLHPKKE 237 (334)
T ss_pred CCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCcc------ccccccccCCCc
Confidence 778999999844 445678999999999976 58888888999999999988887665322 678888888877
Q ss_pred EEEEEecCCCEEEEEECCCCceEEEE-e-cCCCEEEEEEcCc--EEEEEECCCcEEEEECCCCeEE
Q 000744 1217 FAGGSSVDGTAGKVFSISSKTAVGSF-T-TGIDIQHLAVNSD--FIFTATKCGTIEVWLKERVTRV 1278 (1306)
Q Consensus 1217 llas~s~Dg~~I~IWD~~t~~~l~~l-~-~~~~V~sla~spd--~Lasgs~Dg~I~IWd~~tg~~l 1278 (1306)
+++.|+.|. .++.||..++..+..+ + |+++|.|+.|+|+ ..++||+||+|++|...-++..
T Consensus 238 ~fVaGged~-~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 238 FFVAGGEDF-KVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred eEEecCcce-EEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 777777788 7999999999998887 4 6788999999999 8899999999999998776544
No 69
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=5.9e-21 Score=204.83 Aligned_cols=246 Identities=17% Similarity=0.207 Sum_probs=189.8
Q ss_pred cEEEEEeCCCcEEEEeCCC-ceEEcccCCCCEEEEEEeCC-EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEE
Q 000744 1009 KALMNLSSVNATELWHCNE-VTELDSSTNGEVLSLIHLKG-RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYV 1086 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~-~~~i~~~H~~~V~sl~fspd-~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~f 1086 (1306)
+.|+.+++||++++||... .......|..++.+++|.++ .+++|+.||.|+.+|+.++ ....+..|..+|.||.+
T Consensus 26 ~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~---~~~~igth~~~i~ci~~ 102 (323)
T KOG1036|consen 26 SDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTG---NEDQIGTHDEGIRCIEY 102 (323)
T ss_pred CcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCC---cceeeccCCCceEEEEe
Confidence 5677778999999999985 44556789999999999986 9999999999999999997 34566789999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEE
Q 000744 1087 PSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVM 1166 (1306)
Q Consensus 1087 spdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~ 1166 (1306)
++....+++||.|++|++||.+.. .....++ ..+.|.|+..
T Consensus 103 ~~~~~~vIsgsWD~~ik~wD~R~~--~~~~~~d-------------------------------------~~kkVy~~~v 143 (323)
T KOG1036|consen 103 SYEVGCVISGSWDKTIKFWDPRNK--VVVGTFD-------------------------------------QGKKVYCMDV 143 (323)
T ss_pred eccCCeEEEcccCccEEEEecccc--ccccccc-------------------------------------cCceEEEEec
Confidence 998889999999999999999873 1111111 2346777778
Q ss_pred eCCEEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCC----ceEEE
Q 000744 1167 TGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSK----TAVGS 1241 (1306)
Q Consensus 1167 s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~----~~l~~ 1241 (1306)
+++.|++|+.|..+.+||+++........ -..-. .++++++-|++.=.+.++.|| .|.+=.++.. .....
T Consensus 144 ~g~~LvVg~~~r~v~iyDLRn~~~~~q~r----eS~lkyqtR~v~~~pn~eGy~~sSieG-RVavE~~d~s~~~~skkya 218 (323)
T KOG1036|consen 144 SGNRLVVGTSDRKVLIYDLRNLDEPFQRR----ESSLKYQTRCVALVPNGEGYVVSSIEG-RVAVEYFDDSEEAQSKKYA 218 (323)
T ss_pred cCCEEEEeecCceEEEEEcccccchhhhc----cccceeEEEEEEEecCCCceEEEeecc-eEEEEccCCchHHhhhcee
Confidence 88899999999999999999865443111 11222 789999876433233344688 5766555443 33344
Q ss_pred EecC----------CCEEEEEEcCc--EEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCCCccC
Q 000744 1242 FTTG----------IDIQHLAVNSD--FIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1242 l~~~----------~~V~sla~spd--~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~~La 1306 (1306)
|+.| -+|++|+|+|- .++||+.||.|.+||..+.+.+..+.. ....|.+++|+.||..||
T Consensus 219 FkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~-----~~~SI~slsfs~dG~~LA 290 (323)
T KOG1036|consen 219 FKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAK-----YETSISSLSFSMDGSLLA 290 (323)
T ss_pred EEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccC-----CCCceEEEEeccCCCeEE
Confidence 4421 13899999997 999999999999999999999888863 346799999999999876
No 70
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.88 E-value=6.1e-21 Score=199.75 Aligned_cols=253 Identities=16% Similarity=0.165 Sum_probs=207.2
Q ss_pred cccCCCCEEEEEEeCC--EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcC-CCCEEEEEeCCCcEEEEEcC
Q 000744 1032 DSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPS-SGDKLYSGSLDKTIRVWSIK 1108 (1306)
Q Consensus 1032 ~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fsp-dg~~L~Sgs~DgtI~VWdi~ 1108 (1306)
..+|...|.+|+|+-+ .|++|+.|+++.+|+++......-...++|.+.|-.++|+| +.+.|++++.|++|++||++
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r 95 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIR 95 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEec
Confidence 4578999999999975 99999999999999998774444456689999999999998 67899999999999999999
Q ss_pred CCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEec-----------cCCCeEEEEEe--CCEEEEEE
Q 000744 1109 PEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHIN-----------FNKHVKSLVMT--GDKLYCGC 1175 (1306)
Q Consensus 1109 ~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~-----------~~~~V~sl~~s--~d~L~sgs 1175 (1306)
.+ +|......+. .+..++++|+|.++.+.+-+..+..++ ....+.-++|+ ++.++...
T Consensus 96 ~~--k~~~~i~~~~-------eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~ 166 (313)
T KOG1407|consen 96 SG--KCTARIETKG-------ENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTN 166 (313)
T ss_pred cC--cEEEEeeccC-------cceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEec
Confidence 98 4444333222 223345888888888887776555443 34557777777 44566666
Q ss_pred CCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEec-CCCEEEEEE
Q 000744 1176 SGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFTT-GIDIQHLAV 1253 (1306)
Q Consensus 1176 ~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~-~~~V~sla~ 1253 (1306)
..|+|.|.....-++++. ++.|. ...+|.|+|++.++++|+.|. .+.+||+..--|++.|.. .-+|..+.|
T Consensus 167 GlG~v~ILsypsLkpv~s------i~AH~snCicI~f~p~GryfA~GsADA-lvSLWD~~ELiC~R~isRldwpVRTlSF 239 (313)
T KOG1407|consen 167 GLGCVEILSYPSLKPVQS------IKAHPSNCICIEFDPDGRYFATGSADA-LVSLWDVDELICERCISRLDWPVRTLSF 239 (313)
T ss_pred CCceEEEEeccccccccc------cccCCcceEEEEECCCCceEeeccccc-eeeccChhHhhhheeeccccCceEEEEe
Confidence 679999999888888774 55777 888899999999999999998 899999999999999984 556999999
Q ss_pred cCc--EEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCCCccC
Q 000744 1254 NSD--FIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1254 spd--~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~~La 1306 (1306)
+-| +|++||+|..|-|=+++||..+..++ +.++...|+|+|...+||
T Consensus 240 S~dg~~lASaSEDh~IDIA~vetGd~~~eI~------~~~~t~tVAWHPk~~LLA 288 (313)
T KOG1407|consen 240 SHDGRMLASASEDHFIDIAEVETGDRVWEIP------CEGPTFTVAWHPKRPLLA 288 (313)
T ss_pred ccCcceeeccCccceEEeEecccCCeEEEee------ccCCceeEEecCCCceee
Confidence 988 99999999999999999999999998 567899999999987775
No 71
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.87 E-value=3e-20 Score=208.71 Aligned_cols=223 Identities=23% Similarity=0.362 Sum_probs=183.3
Q ss_pred cccCCCCEEEEEEeCC--EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 000744 1032 DSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKP 1109 (1306)
Q Consensus 1032 ~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~ 1109 (1306)
..+|.++|+++.|+|+ ++++++.||.|++||+.++ .....+..|...+..+.|+|+++++++++.||.|++||+.+
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG--ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCC--CcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 4589999999999994 9999999999999999988 67788889999999999999999999999999999999987
Q ss_pred CceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCC--EEEEEECCCcEEEEECCC
Q 000744 1110 EEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGD--KLYCGCSGYSIQEVDLGN 1187 (1306)
Q Consensus 1110 ~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d--~L~sgs~Dg~I~iwDl~~ 1187 (1306)
++ ....+. .|...|.++.|+++ .+++++.||.|++||+.+
T Consensus 83 ~~--~~~~~~------------------------------------~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 124 (289)
T cd00200 83 GE--CVRTLT------------------------------------GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET 124 (289)
T ss_pred cc--ceEEEe------------------------------------ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCC
Confidence 52 111111 12334555555542 566666799999999998
Q ss_pred CceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEecC-CCEEEEEEcCc--EEEEEEC
Q 000744 1188 LTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFTTG-IDIQHLAVNSD--FIFTATK 1263 (1306)
Q Consensus 1188 ~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~~-~~V~sla~spd--~Lasgs~ 1263 (1306)
++....+. .|. .|.++.|++++.++++++.|+ .|++||+++++.+..+..+ ..|.++.|+|+ .+++++.
T Consensus 125 ~~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~~~-~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 197 (289)
T cd00200 125 GKCLTTLR------GHTDWVNSVAFSPDGTFVASSSQDG-TIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS 197 (289)
T ss_pred cEEEEEec------cCCCcEEEEEEcCcCCEEEEEcCCC-cEEEEEccccccceeEecCccccceEEECCCcCEEEEecC
Confidence 88777544 455 899999998777777776577 8999999999888888754 47999999998 8999999
Q ss_pred CCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCCCccC
Q 000744 1264 CGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1264 Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~~La 1306 (1306)
||.|++||+.+++.+..+.. |...|+++.|+|++.+++
T Consensus 198 ~~~i~i~d~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~~ 235 (289)
T cd00200 198 DGTIKLWDLSTGKCLGTLRG-----HENGVNSVAFSPDGYLLA 235 (289)
T ss_pred CCcEEEEECCCCceecchhh-----cCCceEEEEEcCCCcEEE
Confidence 99999999999888888853 567999999999977653
No 72
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.87 E-value=6.6e-22 Score=210.76 Aligned_cols=229 Identities=17% Similarity=0.237 Sum_probs=185.9
Q ss_pred eEEcccCCCCEEEEEEeCC--EEEEEECCCcEEEEeCCCCccc------eEEEEcccCccEEEEEEcCCCCEEEEEeCCC
Q 000744 1029 TELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDSGKRVLR------LIQEVREHTRAVTCLYVPSSGDKLYSGSLDK 1100 (1306)
Q Consensus 1029 ~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t~~~~------~i~~l~~H~~~V~sl~fspdg~~L~Sgs~Dg 1100 (1306)
..+.++.++.+.|..|+|| +|++|+.||.|.+||.-+|+.. .-..|.-|..+|.|++|+.|..++++|+.||
T Consensus 206 r~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDG 285 (508)
T KOG0275|consen 206 RSIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDG 285 (508)
T ss_pred hheecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCC
Confidence 4456778888999999997 9999999999999999888321 1123446788999999999999999999999
Q ss_pred cEEEEEcCCCceeEEEeec--CCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCCEEEEEECCC
Q 000744 1101 TIRVWSIKPEEIHCLQVHN--VKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGDKLYCGCSGY 1178 (1306)
Q Consensus 1101 tI~VWdi~~~~~~~i~~~~--~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~Dg 1178 (1306)
.|+||.+.+| .|++.++ |...|+++. |+.|+. .+++++.|.
T Consensus 286 kIKvWri~tG--~ClRrFdrAHtkGvt~l~-------FSrD~S----------------------------qiLS~sfD~ 328 (508)
T KOG0275|consen 286 KIKVWRIETG--QCLRRFDRAHTKGVTCLS-------FSRDNS----------------------------QILSASFDQ 328 (508)
T ss_pred cEEEEEEecc--hHHHHhhhhhccCeeEEE-------EccCcc----------------------------hhhcccccc
Confidence 9999999998 5666654 444455444 444443 699999999
Q ss_pred cEEEEECCCCceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEec---CCCEEEEEEc
Q 000744 1179 SIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFTT---GIDIQHLAVN 1254 (1306)
Q Consensus 1179 ~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~---~~~V~sla~s 1254 (1306)
++++.-+++|++++.| .||+ .|+...|.+++..+.+++.|| +|++|+.++.+|+.+|+. ..+|+++-.-
T Consensus 329 tvRiHGlKSGK~LKEf------rGHsSyvn~a~ft~dG~~iisaSsDg-tvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~ 401 (508)
T KOG0275|consen 329 TVRIHGLKSGKCLKEF------RGHSSYVNEATFTDDGHHIISASSDG-TVKVWHGKTTECLSTFKPLGTDYPVNSVILL 401 (508)
T ss_pred eEEEeccccchhHHHh------cCccccccceEEcCCCCeEEEecCCc-cEEEecCcchhhhhhccCCCCcccceeEEEc
Confidence 9999999999999854 4777 999999998888888888898 899999999999999984 3358888776
Q ss_pred Cc---EEEEEECCCcEEEEECCCCeEEEEEecccCCCCC-CCeEEEEEcCCCCcc
Q 000744 1255 SD---FIFTATKCGTIEVWLKERVTRVASVKANNSGGGH-AKITCLGTGVDGHPY 1305 (1306)
Q Consensus 1255 pd---~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~-~~V~slafSpdg~~L 1305 (1306)
|. .++.|...++|+|-++. |+.++++.. |... +..-+...||.|.|+
T Consensus 402 PKnpeh~iVCNrsntv~imn~q-GQvVrsfsS---GkREgGdFi~~~lSpkGewi 452 (508)
T KOG0275|consen 402 PKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSS---GKREGGDFINAILSPKGEWI 452 (508)
T ss_pred CCCCceEEEEcCCCeEEEEecc-ceEEeeecc---CCccCCceEEEEecCCCcEE
Confidence 64 88888899999999996 789999975 3332 455667789998875
No 73
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=8.8e-21 Score=214.00 Aligned_cols=265 Identities=15% Similarity=0.157 Sum_probs=209.8
Q ss_pred EEEEeCCCceEEcccCCCCEEEEEEeC----CEEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEE
Q 000744 1020 TELWHCNEVTELDSSTNGEVLSLIHLK----GRVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYS 1095 (1306)
Q Consensus 1020 I~IWd~~~~~~i~~~H~~~V~sl~fsp----d~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~S 1095 (1306)
++-|+-.+...+... .+.|++++|+| +..+++| -.+.+|+..+. ....++...++.|++++|-.||++++.
T Consensus 11 ~~~w~~~~~~~~~ke-~~~vssl~fsp~~P~d~aVt~S--~rvqly~~~~~--~~~k~~srFk~~v~s~~fR~DG~Llaa 85 (487)
T KOG0310|consen 11 IRYWRQETFPPVHKE-HNSVSSLCFSPKHPYDFAVTSS--VRVQLYSSVTR--SVRKTFSRFKDVVYSVDFRSDGRLLAA 85 (487)
T ss_pred chhhhhhcccccccc-cCcceeEecCCCCCCceEEecc--cEEEEEecchh--hhhhhHHhhccceeEEEeecCCeEEEc
Confidence 344654443333333 36799999998 3555555 46899999887 677777778889999999999999999
Q ss_pred EeCCCcEEEEEcCCCc-eeEEEeecCCCCeEEEEe---CCcEEEEEcCCCeEEEEEecCCEE---EeccCCCeEEEEEeC
Q 000744 1096 GSLDKTIRVWSIKPEE-IHCLQVHNVKEAVHELTA---NAEIACFVSPATGVKVYNWSGAIK---HINFNKHVKSLVMTG 1168 (1306)
Q Consensus 1096 gs~DgtI~VWdi~~~~-~~~i~~~~~~~~V~sl~~---~~~~v~~s~dg~~I~i~~~~~~~~---l~~~~~~V~sl~~s~ 1168 (1306)
|...|.|+|+|+++.. ++.+. .|..+|..+.| .+..+....|+..+++|+.++... +.+|++.|.|.+++|
T Consensus 86 GD~sG~V~vfD~k~r~iLR~~~--ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~ 163 (487)
T KOG0310|consen 86 GDESGHVKVFDMKSRVILRQLY--AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISP 163 (487)
T ss_pred cCCcCcEEEeccccHHHHHHHh--hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeecccc
Confidence 9999999999976632 22232 35588888887 667778888999999999997643 457999999999996
Q ss_pred C---EEEEEECCCcEEEEECCCC-ceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCC-CceEEEE
Q 000744 1169 D---KLYCGCSGYSIQEVDLGNL-TSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISS-KTAVGSF 1242 (1306)
Q Consensus 1169 d---~L~sgs~Dg~I~iwDl~~~-~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t-~~~l~~l 1242 (1306)
. .+++||.||.|++||++.. ..+..+ .|. +|-++.+-|++..+++++ |+.|+|||+.+ ++.+..+
T Consensus 164 ~~~hivvtGsYDg~vrl~DtR~~~~~v~el-------nhg~pVe~vl~lpsgs~iasAg--Gn~vkVWDl~~G~qll~~~ 234 (487)
T KOG0310|consen 164 ANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-------NHGCPVESVLALPSGSLIASAG--GNSVKVWDLTTGGQLLTSM 234 (487)
T ss_pred CCCeEEEecCCCceEEEEEeccCCceeEEe-------cCCCceeeEEEcCCCCEEEEcC--CCeEEEEEecCCceehhhh
Confidence 5 6899999999999999986 444332 455 999999987766666653 45899999985 4555555
Q ss_pred e-cCCCEEEEEEcCc--EEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCCCccC
Q 000744 1243 T-TGIDIQHLAVNSD--FIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1243 ~-~~~~V~sla~spd--~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~~La 1306 (1306)
. |+..|||+.+..+ .|++||-|+.|+|||+.+.+.+..+. -.++|.+++.+||++.++
T Consensus 235 ~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~------~~~pvLsiavs~dd~t~v 295 (487)
T KOG0310|consen 235 FNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK------YPGPVLSIAVSPDDQTVV 295 (487)
T ss_pred hcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee------cccceeeEEecCCCceEE
Confidence 5 7888999999886 99999999999999999999999997 346999999999987653
No 74
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.1e-19 Score=196.22 Aligned_cols=264 Identities=18% Similarity=0.230 Sum_probs=199.5
Q ss_pred ccccccccccccccc-----cEEEEEeCCCcEEEEeCCCceE--EcccCCCCEEEEEEeC--CEEEEEEC--CCcEEEEe
Q 000744 994 LRKLKKYSAVVTDIQ-----KALMNLSSVNATELWHCNEVTE--LDSSTNGEVLSLIHLK--GRVLSSHS--DGTIKMWD 1062 (1306)
Q Consensus 994 l~~l~ghs~~V~~i~-----~~Lasgs~Dg~I~IWd~~~~~~--i~~~H~~~V~sl~fsp--d~LaSgs~--Dg~I~vWd 1062 (1306)
.+.|+...+.++++. .++++++.|.++++||...... ....++-.|..+.|.. +.++.++. |.+|+.-+
T Consensus 7 ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLs 86 (311)
T KOG1446|consen 7 AKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLS 86 (311)
T ss_pred ccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEE
Confidence 344444556666665 7899999999999999986443 4445566788888864 45555555 89999999
Q ss_pred CCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCe
Q 000744 1063 SGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATG 1142 (1306)
Q Consensus 1063 ~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~ 1142 (1306)
+.++ +.++.|.||...|++++.+|-++.++|++.|++|++||++..+ |....... ...++.+.|+|-
T Consensus 87 l~dN--kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~--cqg~l~~~--------~~pi~AfDp~GL- 153 (311)
T KOG1446|consen 87 LHDN--KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKK--CQGLLNLS--------GRPIAAFDPEGL- 153 (311)
T ss_pred eecC--ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCC--CceEEecC--------CCcceeECCCCc-
Confidence 9999 9999999999999999999988999999999999999999752 22222100 112223555554
Q ss_pred EEEEEecCCEEEeccCCCeEEEEEeCCEEEEEECCCcEEEEECCCC--ceeEEecCcccccCCc-cEEEEEEeCCcEEEE
Q 000744 1143 VKVYNWSGAIKHINFNKHVKSLVMTGDKLYCGCSGYSIQEVDLGNL--TSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAG 1219 (1306)
Q Consensus 1143 I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~--~~~~~~~~~~~l~gh~-~I~sl~~s~~~~lla 1219 (1306)
.++++...+.|++||++.- .+..+|.... +.. ..+.+.|+|+|.++.
T Consensus 154 ---------------------------ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~---~~~~ew~~l~FS~dGK~iL 203 (311)
T KOG1446|consen 154 ---------------------------IFALANGSELIKLYDLRSFDKGPFTTFSITD---NDEAEWTDLEFSPDGKSIL 203 (311)
T ss_pred ---------------------------EEEEecCCCeEEEEEecccCCCCceeEccCC---CCccceeeeEEcCCCCEEE
Confidence 5677777779999999973 4445554221 223 889999998877666
Q ss_pred EEecCCCEEEEEECCCCceEEEEecCCC----EEEEEEcCc--EEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCe
Q 000744 1220 GSSVDGTAGKVFSISSKTAVGSFTTGID----IQHLAVNSD--FIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKI 1293 (1306)
Q Consensus 1220 s~s~Dg~~I~IWD~~t~~~l~~l~~~~~----V~sla~spd--~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V 1293 (1306)
-+...+ .+++.|.-+|..+.++..+.. -.+.+|.|| ++++|+.||+|++|++++|+.+..+.+ .+..++
T Consensus 204 lsT~~s-~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~----~~~~~~ 278 (311)
T KOG1446|consen 204 LSTNAS-FIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRG----PNGGPV 278 (311)
T ss_pred EEeCCC-cEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecC----CCCCCc
Confidence 665455 899999999999999974221 357789999 999999999999999999999999984 345789
Q ss_pred EEEEEcCCCCcc
Q 000744 1294 TCLGTGVDGHPY 1305 (1306)
Q Consensus 1294 ~slafSpdg~~L 1305 (1306)
.++.|+|.--++
T Consensus 279 ~~~~fnP~~~mf 290 (311)
T KOG1446|consen 279 SCVRFNPRYAMF 290 (311)
T ss_pred cccccCCceeee
Confidence 999999975443
No 75
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.86 E-value=7.9e-21 Score=202.23 Aligned_cols=266 Identities=14% Similarity=0.154 Sum_probs=218.1
Q ss_pred eEEcccCCCCEEEEEEeCC--EEEEEECCCcEEEEeCCC------------Cc----cceEEEEcccCccEEEEEEcCCC
Q 000744 1029 TELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDSGK------------RV----LRLIQEVREHTRAVTCLYVPSSG 1090 (1306)
Q Consensus 1029 ~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t------------~~----~~~i~~l~~H~~~V~sl~fspdg 1090 (1306)
......|++++.+-+|++| ++++|+.|..|+|.|++. +. -..++++..|.+.|+++.|+|..
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 3445789999999999997 999999999999999861 10 14678899999999999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCCc-eeEEEeecCCCCeEEEEe--CCcEEEEEcCCCeEEEEEecCCEEEe------ccCCCe
Q 000744 1091 DKLYSGSLDKTIRVWSIKPEE-IHCLQVHNVKEAVHELTA--NAEIACFVSPATGVKVYNWSGAIKHI------NFNKHV 1161 (1306)
Q Consensus 1091 ~~L~Sgs~DgtI~VWdi~~~~-~~~i~~~~~~~~V~sl~~--~~~~v~~s~dg~~I~i~~~~~~~~l~------~~~~~V 1161 (1306)
..|+||+.|++|+++|+.... .+..+.+....+|.++.| .+.++.+..+...+++|+.+....+. .|.+.|
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai 264 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI 264 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence 999999999999999998754 445556666789999998 67788888888888899888665543 478999
Q ss_pred EEEEEeCC--EEEEEECCCcEEEEECCCCceeEEecCcccccCCc--cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCc
Q 000744 1162 KSLVMTGD--KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ--TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKT 1237 (1306)
Q Consensus 1162 ~sl~~s~d--~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~--~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~ 1237 (1306)
+++.+++. ..++|+.||.|++||=-+++++.+|.. .|. .|.+..|..++.|+.+++.|. ++++|.+.++.
T Consensus 265 ~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~-----AH~gsevcSa~Ftkn~kyiLsSG~DS-~vkLWEi~t~R 338 (430)
T KOG0640|consen 265 TQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGN-----AHGGSEVCSAVFTKNGKYILSSGKDS-TVKLWEISTGR 338 (430)
T ss_pred eEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHh-----hcCCceeeeEEEccCCeEEeecCCcc-eeeeeeecCCc
Confidence 99999955 678999999999999999999887652 444 899999999999998888998 99999999999
Q ss_pred eEEEEecCCC------EEEEEEcCc--EEEEEE-CCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCCCc
Q 000744 1238 AVGSFTTGID------IQHLAVNSD--FIFTAT-KCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDGHP 1304 (1306)
Q Consensus 1238 ~l~~l~~~~~------V~sla~spd--~Lasgs-~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~~ 1304 (1306)
++..+.+.+. -+...|+.. |++.-. ..+.+.-||.+++..+..+. .+|.+.+..+.-||.+.-
T Consensus 339 ~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~s----lgHn~a~R~i~HSP~~p~ 410 (430)
T KOG0640|consen 339 MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLS----LGHNGAVRWIVHSPVEPA 410 (430)
T ss_pred eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcc----cCCCCCceEEEeCCCCCc
Confidence 9999985321 234445543 655544 45789999999998887776 568899999999998753
No 76
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=5.5e-21 Score=228.92 Aligned_cols=230 Identities=17% Similarity=0.227 Sum_probs=183.1
Q ss_pred eEEcccCCCCEEEEEEeCC--EEEEEECCCcEEEEeCCC--------------------------------Cc-------
Q 000744 1029 TELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDSGK--------------------------------RV------- 1067 (1306)
Q Consensus 1029 ~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t--------------------------------~~------- 1067 (1306)
+.+...|++.|+++.|++| +||+||.||.|+||.+.. ..
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 3344489999999999997 999999999999999855 00
Q ss_pred -------------------cceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEE
Q 000744 1068 -------------------LRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELT 1128 (1306)
Q Consensus 1068 -------------------~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~ 1128 (1306)
.++++.|.||.+.|..+.||.++ +|+|+|.|+|||+|++... .|+..+.|.+.|+|++
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~--~CL~~F~HndfVTcVa 416 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRK--ECLKVFSHNDFVTCVA 416 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCc--ceeeEEecCCeeEEEE
Confidence 14556778999999999998654 9999999999999999876 6777766555555554
Q ss_pred eCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCCEEEEEECCCcEEEEECCCCceeEEecCcccccCCccEEE
Q 000744 1129 ANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQTIHS 1208 (1306)
Q Consensus 1129 ~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~I~s 1208 (1306)
|.|-+ .+++++||-||.|+||++...+.+.-+..+ .-|++
T Consensus 417 -------FnPvD---------------------------DryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~------~lITA 456 (712)
T KOG0283|consen 417 -------FNPVD---------------------------DRYFISGSLDGKVRLWSISDKKVVDWNDLR------DLITA 456 (712)
T ss_pred -------ecccC---------------------------CCcEeecccccceEEeecCcCeeEeehhhh------hhhee
Confidence 33322 138999999999999999988877633321 28999
Q ss_pred EEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEe---c------CCCEEEEEEcCc---EEEEEECCCcEEEEECCCCe
Q 000744 1209 LHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFT---T------GIDIQHLAVNSD---FIFTATKCGTIEVWLKERVT 1276 (1306)
Q Consensus 1209 l~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~---~------~~~V~sla~spd---~Lasgs~Dg~I~IWd~~tg~ 1276 (1306)
++|.|+|.+++.|+.+| .+++|+....+....+. + +..|+++.|.|. .++..+.|..|+|+|.++.+
T Consensus 457 vcy~PdGk~avIGt~~G-~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~ 535 (712)
T KOG0283|consen 457 VCYSPDGKGAVIGTFNG-YCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD 535 (712)
T ss_pred EEeccCCceEEEEEecc-EEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchh
Confidence 99999999999999999 89999999887766654 1 336999999865 68888899999999999888
Q ss_pred EEEEEecccCCCCC-CCeEEEEEcCCCCccC
Q 000744 1277 RVASVKANNSGGGH-AKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1277 ~l~~l~~~~~~~~~-~~V~slafSpdg~~La 1306 (1306)
++..|++ .+. ..=....|+.||++||
T Consensus 536 lv~KfKG----~~n~~SQ~~Asfs~Dgk~IV 562 (712)
T KOG0283|consen 536 LVHKFKG----FRNTSSQISASFSSDGKHIV 562 (712)
T ss_pred hhhhhcc----cccCCcceeeeEccCCCEEE
Confidence 9999985 232 3345678999999985
No 77
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=4.7e-21 Score=199.82 Aligned_cols=233 Identities=14% Similarity=0.210 Sum_probs=179.7
Q ss_pred CCcEEEEeCCCce---E-EcccCCCCEEEEEEeCC---EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcC-
Q 000744 1017 VNATELWHCNEVT---E-LDSSTNGEVLSLIHLKG---RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPS- 1088 (1306)
Q Consensus 1017 Dg~I~IWd~~~~~---~-i~~~H~~~V~sl~fspd---~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fsp- 1088 (1306)
.|++.|-++.... . ....-...+..++|+++ .+++++.||++++||.... ..+++.+++|...|.++.|++
T Consensus 37 ~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~-s~Pi~~~kEH~~EV~Svdwn~~ 115 (311)
T KOG0277|consen 37 NGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMP-SKPIHKFKEHKREVYSVDWNTV 115 (311)
T ss_pred CceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCC-CcchhHHHhhhhheEEeccccc
Confidence 3788888875321 1 11233678999999984 9999999999999996433 378999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEe-
Q 000744 1089 SGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMT- 1167 (1306)
Q Consensus 1089 dg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s- 1167 (1306)
++..++++|.|++||+|+...++ .+.++. +|...|....|+
T Consensus 116 ~r~~~ltsSWD~TiKLW~~~r~~--Sv~Tf~------------------------------------gh~~~Iy~a~~sp 157 (311)
T KOG0277|consen 116 RRRIFLTSSWDGTIKLWDPNRPN--SVQTFN------------------------------------GHNSCIYQAAFSP 157 (311)
T ss_pred cceeEEeeccCCceEeecCCCCc--ceEeec------------------------------------CCccEEEEEecCC
Confidence 66788899999999999988762 222221 245556666666
Q ss_pred --CCEEEEEECCCcEEEEECCCC-ceeEEecCcccccCCc-cEEEEEEe-CCcEEEEEEecCCCEEEEEECCC-CceEEE
Q 000744 1168 --GDKLYCGCSGYSIQEVDLGNL-TSTTFYAGTKKLLGKQ-TIHSLHMH-NGLLFAGGSSVDGTAGKVFSISS-KTAVGS 1241 (1306)
Q Consensus 1168 --~d~L~sgs~Dg~I~iwDl~~~-~~~~~~~~~~~l~gh~-~I~sl~~s-~~~~llas~s~Dg~~I~IWD~~t-~~~l~~ 1241 (1306)
|+.++++|.|+++++||++.. +.+. +..|+ .|.++.|+ -+..++++|+.|+ .|++||+++ ..++..
T Consensus 158 ~~~nlfas~Sgd~~l~lwdvr~~gk~~~-------i~ah~~Eil~cdw~ky~~~vl~Tg~vd~-~vr~wDir~~r~pl~e 229 (311)
T KOG0277|consen 158 HIPNLFASASGDGTLRLWDVRSPGKFMS-------IEAHNSEILCCDWSKYNHNVLATGGVDN-LVRGWDIRNLRTPLFE 229 (311)
T ss_pred CCCCeEEEccCCceEEEEEecCCCceeE-------EEeccceeEeecccccCCcEEEecCCCc-eEEEEehhhcccccee
Confidence 457999999999999999874 4333 34677 99999998 5667777888898 899999987 456777
Q ss_pred EecC-CCEEEEEEcCc---EEEEEECCCcEEEEECCCCeE-EEEEecccCCCCCCCeEEEEEcCC
Q 000744 1242 FTTG-IDIQHLAVNSD---FIFTATKCGTIEVWLKERVTR-VASVKANNSGGGHAKITCLGTGVD 1301 (1306)
Q Consensus 1242 l~~~-~~V~sla~spd---~Lasgs~Dg~I~IWd~~tg~~-l~~l~~~~~~~~~~~V~slafSpd 1301 (1306)
+.+| -.|..+.|+|. .|++++.|-+++|||...+.. +.+.. .|..-|..+.||+-
T Consensus 230 L~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~-----~HtEFv~g~Dws~~ 289 (311)
T KOG0277|consen 230 LNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVD-----HHTEFVCGLDWSLF 289 (311)
T ss_pred ecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhh-----ccceEEeccccccc
Confidence 7754 46999999997 999999999999999986543 33332 35577888888864
No 78
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1.3e-20 Score=212.56 Aligned_cols=221 Identities=17% Similarity=0.222 Sum_probs=181.4
Q ss_pred cEEEEEeCCCcEEEEeCCC--ceEEcccCCCCEEEEEEeCC---EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEE
Q 000744 1009 KALMNLSSVNATELWHCNE--VTELDSSTNGEVLSLIHLKG---RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTC 1083 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~--~~~i~~~H~~~V~sl~fspd---~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~s 1083 (1306)
++||.|+..|.|+|||.++ ......+|+.+|..+.|+|. .+++|+.|+.+++||+.+. .....+.+|++.|.|
T Consensus 81 ~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a--~v~~~l~~htDYVR~ 158 (487)
T KOG0310|consen 81 RLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA--YVQAELSGHTDYVRC 158 (487)
T ss_pred eEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc--EEEEEecCCcceeEe
Confidence 8999999999999999776 55667899999999999984 8999999999999999998 556688999999999
Q ss_pred EEEcC-CCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeE
Q 000744 1084 LYVPS-SGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVK 1162 (1306)
Q Consensus 1084 l~fsp-dg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~ 1162 (1306)
.+|+| ++.+++|||.||+|++||++... ..+..++|..+|.++. +-|.|.
T Consensus 159 g~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~elnhg~pVe~vl-------~lpsgs--------------------- 209 (487)
T KOG0310|consen 159 GDISPANDHIVVTGSYDGKVRLWDTRSLT-SRVVELNHGCPVESVL-------ALPSGS--------------------- 209 (487)
T ss_pred eccccCCCeEEEecCCCceEEEEEeccCC-ceeEEecCCCceeeEE-------EcCCCC---------------------
Confidence 99999 56699999999999999999863 4455566666666665 455544
Q ss_pred EEEEeCCEEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEE
Q 000744 1163 SLVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGS 1241 (1306)
Q Consensus 1163 sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~ 1241 (1306)
+++......+++||+.+|..... .+..|. .|+|+.+..++.-+.+++.|+ .+++||+.+.+.++.
T Consensus 210 --------~iasAgGn~vkVWDl~~G~qll~-----~~~~H~KtVTcL~l~s~~~rLlS~sLD~-~VKVfd~t~~Kvv~s 275 (487)
T KOG0310|consen 210 --------LIASAGGNSVKVWDLTTGGQLLT-----SMFNHNKTVTCLRLASDSTRLLSGSLDR-HVKVFDTTNYKVVHS 275 (487)
T ss_pred --------EEEEcCCCeEEEEEecCCceehh-----hhhcccceEEEEEeecCCceEeeccccc-ceEEEEccceEEEEe
Confidence 33344457899999996544331 233466 999999986656666777899 799999999999999
Q ss_pred EecCCCEEEEEEcCc--EEEEEECCCcEEEEECCC
Q 000744 1242 FTTGIDIQHLAVNSD--FIFTATKCGTIEVWLKER 1274 (1306)
Q Consensus 1242 l~~~~~V~sla~spd--~Lasgs~Dg~I~IWd~~t 1274 (1306)
+.-.++|.+++++|+ .++.|-.||.+.+=+...
T Consensus 276 ~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 276 WKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred eecccceeeEEecCCCceEEEecccceeeeehhhc
Confidence 999999999999997 999999999988875443
No 79
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1.1e-20 Score=201.20 Aligned_cols=275 Identities=15% Similarity=0.242 Sum_probs=219.4
Q ss_pred hccccccccccccccccc-----cEEEEEeCCCcEEEEeCCCc--eEEcccCCCCEEEEEEeCC--EEEEEECCCcEEEE
Q 000744 991 YGTLRKLKKYSAVVTDIQ-----KALMNLSSVNATELWHCNEV--TELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMW 1061 (1306)
Q Consensus 991 ~~~l~~l~ghs~~V~~i~-----~~Lasgs~Dg~I~IWd~~~~--~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vW 1061 (1306)
....+.+.||.+.|+.+. .++.+++.|.+.+||.+++. .....||.+.|.||.|++. ++++++.|++-.||
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW 217 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIW 217 (481)
T ss_pred EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHH
Confidence 356788999999999887 78999999999999999974 4456899999999999984 89999999999999
Q ss_pred eC------CCCc--------------------------------cceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEE
Q 000744 1062 DS------GKRV--------------------------------LRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIR 1103 (1306)
Q Consensus 1062 d~------~t~~--------------------------------~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~ 1103 (1306)
.. .... ..++..+.+|...|.+..|-..|+.++++|.|.+-.
T Consensus 218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAn 297 (481)
T KOG0300|consen 218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTAN 297 (481)
T ss_pred HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccce
Confidence 82 1100 135667889999999999999999999999999999
Q ss_pred EEEcCCCc-eeEEEeecCCCCeEEEEe--CCcEEEEEcCCCeEEEEEecCCE----EEeccCCCeEEEEEe-CCEEEEEE
Q 000744 1104 VWSIKPEE-IHCLQVHNVKEAVHELTA--NAEIACFVSPATGVKVYNWSGAI----KHINFNKHVKSLVMT-GDKLYCGC 1175 (1306)
Q Consensus 1104 VWdi~~~~-~~~i~~~~~~~~V~sl~~--~~~~v~~s~dg~~I~i~~~~~~~----~l~~~~~~V~sl~~s-~d~L~sgs 1175 (1306)
+||+++++ ...+..++ ...+.++- .+.++..+..+...++|++...+ .+.+|...|+++.|. ++.+++|+
T Consensus 298 lwDVEtge~v~~LtGHd--~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgS 375 (481)
T KOG0300|consen 298 LWDVETGEVVNILTGHD--SELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGS 375 (481)
T ss_pred eeeeccCceeccccCcc--hhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecC
Confidence 99999995 33333333 45555444 56677777778889999998543 456899999999999 55799999
Q ss_pred CCCcEEEEECCCCc-eeEEecCcccccCCccEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEe-----c-CCCE
Q 000744 1176 SGYSIQEVDLGNLT-STTFYAGTKKLLGKQTIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFT-----T-GIDI 1248 (1306)
Q Consensus 1176 ~Dg~I~iwDl~~~~-~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~-----~-~~~V 1248 (1306)
.|.+|++||+++.. ++.++. ..++++.++++.++.+++-- +|++.|++||++.. .+..++ + ...|
T Consensus 376 DDrTvKvWdLrNMRsplATIR------tdS~~NRvavs~g~~iIAiP-hDNRqvRlfDlnG~-RlaRlPrtsRqgHrRMV 447 (481)
T KOG0300|consen 376 DDRTVKVWDLRNMRSPLATIR------TDSPANRVAVSKGHPIIAIP-HDNRQVRLFDLNGN-RLARLPRTSRQGHRRMV 447 (481)
T ss_pred CCceEEEeeeccccCcceeee------cCCccceeEeecCCceEEec-cCCceEEEEecCCC-ccccCCcccccccceee
Confidence 99999999999854 333322 22389999999999888775 58789999998754 333343 2 3349
Q ss_pred EEEEEcCc----EEEEEECCCcEEEEECCCC
Q 000744 1249 QHLAVNSD----FIFTATKCGTIEVWLKERV 1275 (1306)
Q Consensus 1249 ~sla~spd----~Lasgs~Dg~I~IWd~~tg 1275 (1306)
+|++|..+ -|++++.|..+.=|++.+.
T Consensus 448 ~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 448 TCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred eeeeccccCcccccccccccceeeeeEeccc
Confidence 99999876 8899999999999998753
No 80
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.86 E-value=1.1e-20 Score=213.02 Aligned_cols=264 Identities=17% Similarity=0.217 Sum_probs=196.7
Q ss_pred cccccccccccccc-----cEEEEEeCCCcEEEEeCCC-------ceEEcccCCCCEEEEEEeC--CEEEEEECCCcEEE
Q 000744 995 RKLKKYSAVVTDIQ-----KALMNLSSVNATELWHCNE-------VTELDSSTNGEVLSLIHLK--GRVLSSHSDGTIKM 1060 (1306)
Q Consensus 995 ~~l~ghs~~V~~i~-----~~Lasgs~Dg~I~IWd~~~-------~~~i~~~H~~~V~sl~fsp--d~LaSgs~Dg~I~v 1060 (1306)
-.|++|+..|+.+. -.|+|||.|.+|++||+.. ...+.......|.++.|++ +.|++.+.....+|
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl 240 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL 240 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence 35788999998877 7899999999999999974 2334445577899999998 48888888889999
Q ss_pred EeCCCCccceEE------------EEcccCccEEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCc--eeEEEeecCCCCeE
Q 000744 1061 WDSGKRVLRLIQ------------EVREHTRAVTCLYVPSS-GDKLYSGSLDKTIRVWSIKPEE--IHCLQVHNVKEAVH 1125 (1306)
Q Consensus 1061 Wd~~t~~~~~i~------------~l~~H~~~V~sl~fspd-g~~L~Sgs~DgtI~VWdi~~~~--~~~i~~~~~~~~V~ 1125 (1306)
+|-... +... .-+||...++|.+|+|+ .+.|+|++.||++|+||+...+ .+.+......
T Consensus 241 ~DRdG~--~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~---- 314 (641)
T KOG0772|consen 241 LDRDGF--EIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAG---- 314 (641)
T ss_pred EccCCc--eeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCC----
Confidence 998654 2222 23689999999999995 5689999999999999998764 2222222100
Q ss_pred EEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCC--EEEEEECCCcEEEEECCCCceeEEecCcccccCC
Q 000744 1126 ELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGD--KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGK 1203 (1306)
Q Consensus 1126 sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d--~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh 1203 (1306)
| ..-++++.+|+++ .|++|+.||+|++||..+......+. .-..|
T Consensus 315 --------------g----------------~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~---vk~AH 361 (641)
T KOG0772|consen 315 --------------G----------------KRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMK---VKDAH 361 (641)
T ss_pred --------------C----------------cccCceeeecCCCcchhhhcccCCceeeeecCCcccccceE---eeecc
Confidence 0 1123344444433 68999999999999986644332222 11244
Q ss_pred c---cEEEEEEeCCcEEEEEEecCCCEEEEEECCC-CceEEEEec---CCCEEEEEEcCc--EEEEEE------CCCcEE
Q 000744 1204 Q---TIHSLHMHNGLLFAGGSSVDGTAGKVFSISS-KTAVGSFTT---GIDIQHLAVNSD--FIFTAT------KCGTIE 1268 (1306)
Q Consensus 1204 ~---~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t-~~~l~~l~~---~~~V~sla~spd--~Lasgs------~Dg~I~ 1268 (1306)
. .|+||.|+.++.++++-+.|+ ++++||++. .+++....+ ...-+.++|+|+ +|++|+ ..|++.
T Consensus 362 ~~g~~Itsi~FS~dg~~LlSRg~D~-tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~ 440 (641)
T KOG0772|consen 362 LPGQDITSISFSYDGNYLLSRGFDD-TLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLF 440 (641)
T ss_pred CCCCceeEEEeccccchhhhccCCC-ceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEE
Confidence 4 799999999999999988898 899999987 456665553 345688999999 888876 347899
Q ss_pred EEECCCCeEEEEEecccCCCCCCCeEEEEEcCCCC
Q 000744 1269 VWLKERVTRVASVKANNSGGGHAKITCLGTGVDGH 1303 (1306)
Q Consensus 1269 IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~ 1303 (1306)
+||..+.+.++++.. ....|..+.|+|.=+
T Consensus 441 f~d~~t~d~v~ki~i-----~~aSvv~~~WhpkLN 470 (641)
T KOG0772|consen 441 FFDRMTLDTVYKIDI-----STASVVRCLWHPKLN 470 (641)
T ss_pred EEeccceeeEEEecC-----CCceEEEEeecchhh
Confidence 999999999999874 456788899998633
No 81
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.86 E-value=1.9e-21 Score=211.39 Aligned_cols=256 Identities=13% Similarity=0.140 Sum_probs=204.2
Q ss_pred ccCCCCEEEEEEeCC---EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 000744 1033 SSTNGEVLSLIHLKG---RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKP 1109 (1306)
Q Consensus 1033 ~~H~~~V~sl~fspd---~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~ 1109 (1306)
.+|...|.|++=+|+ .++||+.||.|++||+.+. .++.+++.|.+.|..|++.. ..++++|.|++|+.|.+..
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR--~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~ 138 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR--ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG 138 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhhh--hhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC
Confidence 578888999999986 7999999999999999998 89999999999999999976 6799999999999999887
Q ss_pred CceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEec---cCCCeEEEEEeCC---EEEEEECCCcEEEE
Q 000744 1110 EEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHIN---FNKHVKSLVMTGD---KLYCGCSGYSIQEV 1183 (1306)
Q Consensus 1110 ~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~---~~~~V~sl~~s~d---~L~sgs~Dg~I~iw 1183 (1306)
. ...++.....+..+........|...|..|.+|+......+.. ....|.++.|+|. .|+++..|+.|.+|
T Consensus 139 ~---p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLy 215 (433)
T KOG0268|consen 139 P---PLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLY 215 (433)
T ss_pred C---cceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEE
Confidence 4 4444444566666665555556788888899999874433322 3467899999975 57888899999999
Q ss_pred ECCCCceeEEecCcccccCCccEEEEEEeCCcEEEEEEecCCCEEEEEECCCC-ceEEEEec-CCCEEEEEEcCc--EEE
Q 000744 1184 DLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLLFAGGSSVDGTAGKVFSISSK-TAVGSFTT-GIDIQHLAVNSD--FIF 1259 (1306)
Q Consensus 1184 Dl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~-~~l~~l~~-~~~V~sla~spd--~La 1259 (1306)
|++++++++...- ++ .-+.|+|+|....+++++.|. .++.||++.- ..+..+.+ .+.|.+++|+|. -++
T Consensus 216 D~R~~~Pl~KVi~--~m----RTN~IswnPeafnF~~a~ED~-nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efv 288 (433)
T KOG0268|consen 216 DLRQASPLKKVIL--TM----RTNTICWNPEAFNFVAANEDH-NLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFV 288 (433)
T ss_pred ecccCCccceeee--ec----cccceecCccccceeeccccc-cceehhhhhhcccchhhcccceeEEEeccCCCcchhc
Confidence 9999988764321 01 447899999888888888888 7999999874 45566664 456999999998 999
Q ss_pred EEECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCCCccC
Q 000744 1260 TATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1260 sgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~~La 1306 (1306)
+||.|.+|+||.+..+..-..+.. .--..|.+|.||.|.+|++
T Consensus 289 sgsyDksIRIf~~~~~~SRdiYht----kRMq~V~~Vk~S~Dskyi~ 331 (433)
T KOG0268|consen 289 SGSYDKSIRIFPVNHGHSRDIYHT----KRMQHVFCVKYSMDSKYII 331 (433)
T ss_pred cccccceEEEeecCCCcchhhhhH----hhhheeeEEEEeccccEEE
Confidence 999999999999998865544431 1115799999999999874
No 82
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.86 E-value=3.7e-21 Score=209.14 Aligned_cols=273 Identities=10% Similarity=0.177 Sum_probs=212.9
Q ss_pred ccccccccccccccc------cEEEEEeCCCcEEEEeCCC--ceEEcccCCCCEEEEEEeCCEEEEEECCCcEEEEeCCC
Q 000744 994 LRKLKKYSAVVTDIQ------KALMNLSSVNATELWHCNE--VTELDSSTNGEVLSLIHLKGRVLSSHSDGTIKMWDSGK 1065 (1306)
Q Consensus 994 l~~l~ghs~~V~~i~------~~Lasgs~Dg~I~IWd~~~--~~~i~~~H~~~V~sl~fspd~LaSgs~Dg~I~vWd~~t 1065 (1306)
+..|.||.+.|.++. ..++||+.||.|+|||+.+ +...+..|.+.|..|+++...+++++.|.+|+.|.++.
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~ 138 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDG 138 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeeccC
Confidence 567799999999998 5699999999999999985 66777899999999999999999999999999999976
Q ss_pred CccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeec-CCCCeEEEEeC---CcEEEEEcCCC
Q 000744 1066 RVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHN-VKEAVHELTAN---AEIACFVSPAT 1141 (1306)
Q Consensus 1066 ~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~-~~~~V~sl~~~---~~~v~~s~dg~ 1141 (1306)
.+++++.+ +..+..++-+..+..++|+|.+ |-|||.... .+++.+. ..+.|.++.|+ ..++..+..++
T Consensus 139 ---~p~~tilg-~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~--~Pv~smswG~Dti~svkfNpvETsILas~~sDr 210 (433)
T KOG0268|consen 139 ---PPLHTILG-KSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRD--NPVSSMSWGADSISSVKFNPVETSILASCASDR 210 (433)
T ss_pred ---Ccceeeec-cccccccccccccccccccCce--eeecccccC--CccceeecCCCceeEEecCCCcchheeeeccCC
Confidence 36777754 4567888888788899999864 899998765 3333333 23678888883 23333443444
Q ss_pred eEEEEEecCCEEE--eccCCCeEEEEEeCC--EEEEEECCCcEEEEECCCC-ceeEEecCcccccCCc-cEEEEEEeCCc
Q 000744 1142 GVKVYNWSGAIKH--INFNKHVKSLVMTGD--KLYCGCSGYSIQEVDLGNL-TSTTFYAGTKKLLGKQ-TIHSLHMHNGL 1215 (1306)
Q Consensus 1142 ~I~i~~~~~~~~l--~~~~~~V~sl~~s~d--~L~sgs~Dg~I~iwDl~~~-~~~~~~~~~~~l~gh~-~I~sl~~s~~~ 1215 (1306)
.|.++|......+ .-....-+.|+|+|+ .+++|+.|..++.||++.. .++.++ .+|. .|.+++|+|.|
T Consensus 211 sIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~------~dhvsAV~dVdfsptG 284 (433)
T KOG0268|consen 211 SIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVH------KDHVSAVMDVDFSPTG 284 (433)
T ss_pred ceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhh------cccceeEEEeccCCCc
Confidence 4889998844333 234556678999987 4899999999999999974 344433 3666 99999999999
Q ss_pred EEEEEEecCCCEEEEEECCCCceEEEEec--CCCEEEEEEcCc--EEEEEECCCcEEEEECCCCeEEEEE
Q 000744 1216 LFAGGSSVDGTAGKVFSISSKTAVGSFTT--GIDIQHLAVNSD--FIFTATKCGTIEVWLKERVTRVASV 1281 (1306)
Q Consensus 1216 ~llas~s~Dg~~I~IWD~~t~~~l~~l~~--~~~V~sla~spd--~Lasgs~Dg~I~IWd~~tg~~l~~l 1281 (1306)
.-+++||.|. +|+||.++.+..-..+.. -..|.++.|+-| |+++||+|+.|++|...-.+.+..+
T Consensus 285 ~EfvsgsyDk-sIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv~ 353 (433)
T KOG0268|consen 285 QEFVSGSYDK-SIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGVI 353 (433)
T ss_pred chhccccccc-eEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCCC
Confidence 8888999998 899999987765433321 245999999998 9999999999999998765554443
No 83
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.85 E-value=5.7e-20 Score=203.95 Aligned_cols=249 Identities=14% Similarity=0.154 Sum_probs=199.8
Q ss_pred cEEEEEeCCCcEEEEeCCC--ceEEcccCCCCEEEEEEeCC--EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEE
Q 000744 1009 KALMNLSSVNATELWHCNE--VTELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCL 1084 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~--~~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl 1084 (1306)
..+.||+.|.++.++|... ...++.||...|+++.|+|+ .+++++.|-.|+||..... .+......|..+|+.+
T Consensus 232 ~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~--s~~~~~~~h~~~V~~l 309 (506)
T KOG0289|consen 232 SKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS--SEPTSSRPHEEPVTGL 309 (506)
T ss_pred CcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc--cCccccccccccceee
Confidence 5688999999999999874 56678899999999999995 8999999999999999877 5667778999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeec-CCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEE
Q 000744 1085 YVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHN-VKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKS 1163 (1306)
Q Consensus 1085 ~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~-~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~s 1163 (1306)
..+|.|.||++++.||+....|++++...+..... ..-.+++.. |+|||.
T Consensus 310 s~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~-------fHpDgL---------------------- 360 (506)
T KOG0289|consen 310 SLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA-------FHPDGL---------------------- 360 (506)
T ss_pred eeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee-------EcCCce----------------------
Confidence 99999999999999999999999998422222221 111233333 444443
Q ss_pred EEEeCCEEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEE
Q 000744 1164 LVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSF 1242 (1306)
Q Consensus 1164 l~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l 1242 (1306)
.+.+|..||.+++||+.++..+.. +.+|+ +|..+.|+.+|+++++++.|+ .|++||++.-+...++
T Consensus 361 ------ifgtgt~d~~vkiwdlks~~~~a~------Fpght~~vk~i~FsENGY~Lat~add~-~V~lwDLRKl~n~kt~ 427 (506)
T KOG0289|consen 361 ------IFGTGTPDGVVKIWDLKSQTNVAK------FPGHTGPVKAISFSENGYWLATAADDG-SVKLWDLRKLKNFKTI 427 (506)
T ss_pred ------EEeccCCCceEEEEEcCCcccccc------CCCCCCceeEEEeccCceEEEEEecCC-eEEEEEehhhccccee
Confidence 578999999999999999887774 44777 999999999999999998777 7999999998888888
Q ss_pred ec--CCCEEEEEEcCc--EEEEEECCCcEEEEECCC--CeEEEEEecccCCCCCCCeEEEEEcCCCCccC
Q 000744 1243 TT--GIDIQHLAVNSD--FIFTATKCGTIEVWLKER--VTRVASVKANNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1243 ~~--~~~V~sla~spd--~Lasgs~Dg~I~IWd~~t--g~~l~~l~~~~~~~~~~~V~slafSpdg~~La 1306 (1306)
.- ...|.++.|++. +++.++.|=+|++++-.+ ..++..+.. |.+..+++.|..+.++++
T Consensus 428 ~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~-----~sg~st~v~Fg~~aq~l~ 492 (506)
T KOG0289|consen 428 QLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELAD-----HSGLSTGVRFGEHAQYLA 492 (506)
T ss_pred eccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhh-----cccccceeeecccceEEe
Confidence 74 346999999876 999998887777777544 345555542 556788899988877664
No 84
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.85 E-value=6.6e-20 Score=205.45 Aligned_cols=258 Identities=20% Similarity=0.279 Sum_probs=202.5
Q ss_pred EEcccCCCCEEEEEEeCC--EEEEEECCCcEEEEeCCCCccc--eE-------------EEE-cccCccEEEEEEcCCCC
Q 000744 1030 ELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDSGKRVLR--LI-------------QEV-REHTRAVTCLYVPSSGD 1091 (1306)
Q Consensus 1030 ~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t~~~~--~i-------------~~l-~~H~~~V~sl~fspdg~ 1091 (1306)
.....|.-+|.|++++|+ +.++++.||+|.=|++.++... .+ ..- ++|.+.|.+++.++||+
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 345689999999999997 9999999999999999877311 00 011 37888999999999999
Q ss_pred EEEEEeCCCcEEEEEcCCCceeEEEee-cCCCCeEEEEe---CCcEEEEEcCCCeEEEEEecCC---EEEeccCCCeEEE
Q 000744 1092 KLYSGSLDKTIRVWSIKPEEIHCLQVH-NVKEAVHELTA---NAEIACFVSPATGVKVYNWSGA---IKHINFNKHVKSL 1164 (1306)
Q Consensus 1092 ~L~Sgs~DgtI~VWdi~~~~~~~i~~~-~~~~~V~sl~~---~~~~v~~s~dg~~I~i~~~~~~---~~l~~~~~~V~sl 1164 (1306)
+|++|+.|..|.||+.++.+ .++.+ .|.+.|.+++| ...+++.+.|.. +++|+.+.. -.+++|.+.|.++
T Consensus 216 ylatgg~d~~v~Iw~~~t~e--hv~~~~ghr~~V~~L~fr~gt~~lys~s~Drs-vkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLE--HVKVFKGHRGAVSSLAFRKGTSELYSASADRS-VKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred EEEecCCCceEEEecCcccc--hhhcccccccceeeeeeecCccceeeeecCCc-eEEEehhHhHHHHHHhCCccceeee
Confidence 99999999999999999974 34443 36799999999 555666666665 999999843 3457899999999
Q ss_pred EEeC-CE-EEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEE
Q 000744 1165 VMTG-DK-LYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGS 1241 (1306)
Q Consensus 1165 ~~s~-d~-L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~ 1241 (1306)
.... .. +-+|+.|+++++|++.....+ +|. ++. .+-|++|-++..|+.++ .|| .|.+|++.+.+++.+
T Consensus 293 daL~reR~vtVGgrDrT~rlwKi~eesql-ifr------g~~~sidcv~~In~~HfvsGS-dnG-~IaLWs~~KKkplf~ 363 (479)
T KOG0299|consen 293 DALSRERCVTVGGRDRTVRLWKIPEESQL-IFR------GGEGSIDCVAFINDEHFVSGS-DNG-SIALWSLLKKKPLFT 363 (479)
T ss_pred chhcccceEEeccccceeEEEecccccee-eee------CCCCCeeeEEEecccceeecc-CCc-eEEEeeecccCceeE
Confidence 8774 34 455669999999999554333 333 445 89999998888887665 455 899999999998887
Q ss_pred Ee--c---C--------CCEEEEEEcCc--EEEEEECCCcEEEEECCCC----eEEEEEecccCCCCCCCeEEEEEcCCC
Q 000744 1242 FT--T---G--------IDIQHLAVNSD--FIFTATKCGTIEVWLKERV----TRVASVKANNSGGGHAKITCLGTGVDG 1302 (1306)
Q Consensus 1242 l~--~---~--------~~V~sla~spd--~Lasgs~Dg~I~IWd~~tg----~~l~~l~~~~~~~~~~~V~slafSpdg 1302 (1306)
.. | . .+|++++..|. ++++||.+|.|++|.++.| +++..+. -.+.|++++|+++|
T Consensus 364 ~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls------~~GfVNsl~f~~sg 437 (479)
T KOG0299|consen 364 SRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS------LVGFVNSLAFSNSG 437 (479)
T ss_pred eeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc------cccEEEEEEEccCC
Confidence 75 2 1 26899999886 9999999999999999887 3444444 33689999999999
Q ss_pred Ccc
Q 000744 1303 HPY 1305 (1306)
Q Consensus 1303 ~~L 1305 (1306)
++|
T Consensus 438 k~i 440 (479)
T KOG0299|consen 438 KRI 440 (479)
T ss_pred CEE
Confidence 965
No 85
>PTZ00421 coronin; Provisional
Probab=99.85 E-value=2.1e-19 Score=218.69 Aligned_cols=235 Identities=12% Similarity=0.096 Sum_probs=168.0
Q ss_pred cccccccccccccc------cEEEEEeCCCcEEEEeCCCc---------eEEcccCCCCEEEEEEeCC---EEEEEECCC
Q 000744 995 RKLKKYSAVVTDIQ------KALMNLSSVNATELWHCNEV---------TELDSSTNGEVLSLIHLKG---RVLSSHSDG 1056 (1306)
Q Consensus 995 ~~l~ghs~~V~~i~------~~Lasgs~Dg~I~IWd~~~~---------~~i~~~H~~~V~sl~fspd---~LaSgs~Dg 1056 (1306)
..+.||.+.|.++. ++|++|+.|++|++||+.+. .....+|...|.+++|+|+ +|++|+.|+
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 35789999998766 68999999999999998642 3456789999999999983 899999999
Q ss_pred cEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEee-cCCCCe-EEEEeCCcEE
Q 000744 1057 TIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVH-NVKEAV-HELTANAEIA 1134 (1306)
Q Consensus 1057 ~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~-~~~~~V-~sl~~~~~~v 1134 (1306)
+|+|||+.++ +.+..+.+|...|++++|+|+|.+|++|+.||+|++||+++++ .+... .|.+.+ ..+.
T Consensus 149 tVrIWDl~tg--~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~--~v~tl~~H~~~~~~~~~------ 218 (493)
T PTZ00421 149 VVNVWDVERG--KAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT--IVSSVEAHASAKSQRCL------ 218 (493)
T ss_pred EEEEEECCCC--eEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc--EEEEEecCCCCcceEEE------
Confidence 9999999998 7888999999999999999999999999999999999999874 22221 122211 1111
Q ss_pred EEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCCEEEEE----ECCCcEEEEECCCCc-eeEEecCcccccCCc-cEEE
Q 000744 1135 CFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGDKLYCG----CSGYSIQEVDLGNLT-STTFYAGTKKLLGKQ-TIHS 1208 (1306)
Q Consensus 1135 ~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sg----s~Dg~I~iwDl~~~~-~~~~~~~~~~l~gh~-~I~s 1208 (1306)
+.+++. .++++ +.|+.|++||+++.. ....... .+. .+..
T Consensus 219 -w~~~~~----------------------------~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~-----d~~~~~~~ 264 (493)
T PTZ00421 219 -WAKRKD----------------------------LIITLGCSKSQQRQIMLWDTRKMASPYSTVDL-----DQSSALFI 264 (493)
T ss_pred -EcCCCC----------------------------eEEEEecCCCCCCeEEEEeCCCCCCceeEecc-----CCCCceEE
Confidence 222222 34443 358999999998754 3322211 112 4555
Q ss_pred EEEeCCcEEEEEEe-cCCCEEEEEECCCCceEEEEec--CCCEEEEEEcCcEEEEEECCCcEEEEECCC
Q 000744 1209 LHMHNGLLFAGGSS-VDGTAGKVFSISSKTAVGSFTT--GIDIQHLAVNSDFIFTATKCGTIEVWLKER 1274 (1306)
Q Consensus 1209 l~~s~~~~llas~s-~Dg~~I~IWD~~t~~~l~~l~~--~~~V~sla~spd~Lasgs~Dg~I~IWd~~t 1274 (1306)
..|++++.+++.++ .|+ .|++||+.+++.+..... ...+.+++|.|.+-+=...--..++|.+..
T Consensus 265 ~~~d~d~~~L~lggkgDg-~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~~~dv~~~Ei~r~~~l~~ 332 (493)
T PTZ00421 265 PFFDEDTNLLYIGSKGEG-NIRCFELMNERLTFCSSYSSVEPHKGLCMMPKWSLDTRKCEIARFYALTY 332 (493)
T ss_pred EEEcCCCCEEEEEEeCCC-eEEEEEeeCCceEEEeeccCCCCCcceEecccccccccceeeeEEEEecC
Confidence 66776655444444 477 899999999988776653 445888999887332222223346666643
No 86
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=3.4e-20 Score=191.22 Aligned_cols=252 Identities=17% Similarity=0.216 Sum_probs=196.3
Q ss_pred HHHhhhcc-ccCCchhHHHhhhhhhhhhccccccccccccccccc-----cEEEEEeCCCcEEEEeCCCce--EEcccCC
Q 000744 965 LTALALKT-FISDPVALEELGKYAKCIYGTLRKLKKYSAVVTDIQ-----KALMNLSSVNATELWHCNEVT--ELDSSTN 1036 (1306)
Q Consensus 965 l~~~~~~~-~l~d~~~~~~l~~~~~~~~~~l~~l~ghs~~V~~i~-----~~Lasgs~Dg~I~IWd~~~~~--~i~~~H~ 1036 (1306)
+.+.+++. .+|+|.... ++++..||-..|.+.. ..+++|+.|..|.+||+.+.+ .-+.+|.
T Consensus 33 ltcGsdrtvrLWNp~rg~-----------liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~ 101 (307)
T KOG0316|consen 33 LTCGSDRTVRLWNPLRGA-----------LIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHL 101 (307)
T ss_pred EEcCCCceEEeecccccc-----------eeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeeccccc
Confidence 34444444 777766543 4777788887776665 679999999999999999754 4467999
Q ss_pred CCEEEEEEeCC--EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeE
Q 000744 1037 GEVLSLIHLKG--RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHC 1114 (1306)
Q Consensus 1037 ~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~ 1114 (1306)
+.|..+.|+.+ .+++|+.|.++++||-.+..+++++.+..-.+.|.+|..+ +..++.||.||+++.||++.|.
T Consensus 102 aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~--- 176 (307)
T KOG0316|consen 102 AQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGT--- 176 (307)
T ss_pred ceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecce---
Confidence 99999999985 9999999999999999988889999999999999999985 5679999999999999999873
Q ss_pred EEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCCEEEEEECCCcEEEEECCCCceeEEe
Q 000744 1115 LQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGDKLYCGCSGYSIQEVDLGNLTSTTFY 1194 (1306)
Q Consensus 1115 i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~ 1194 (1306)
+..-....+|+++. +++||+ ..++++.|+++++.|-.+|+.+..|
T Consensus 177 l~sDy~g~pit~vs-------~s~d~n----------------------------c~La~~l~stlrLlDk~tGklL~sY 221 (307)
T KOG0316|consen 177 LSSDYFGHPITSVS-------FSKDGN----------------------------CSLASSLDSTLRLLDKETGKLLKSY 221 (307)
T ss_pred eehhhcCCcceeEE-------ecCCCC----------------------------EEEEeeccceeeecccchhHHHHHh
Confidence 11111234555555 555554 6889999999999999999999988
Q ss_pred cCcccccCCccEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEecCCC--EEEEEEcCc--EEEEEECCCcEEEE
Q 000744 1195 AGTKKLLGKQTIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFTTGID--IQHLAVNSD--FIFTATKCGTIEVW 1270 (1306)
Q Consensus 1195 ~~~~~l~gh~~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~~~~--V~sla~spd--~Lasgs~Dg~I~IW 1270 (1306)
.+|+... .=...+++.....+++||+|| .+++||+.+...+..+.+++. |++++++|. .++++. ++.+..|
T Consensus 222 kGhkn~e---ykldc~l~qsdthV~sgSEDG-~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~ 296 (307)
T KOG0316|consen 222 KGHKNME---YKLDCCLNQSDTHVFSGSEDG-KVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT-GHGDLFW 296 (307)
T ss_pred cccccce---eeeeeeecccceeEEeccCCc-eEEEEEeccceeeeeeccCCceeEEeeecccCccceeEec-CCceece
Confidence 7664311 233455666777788888998 799999999999999986554 789999997 444444 3456666
Q ss_pred EC
Q 000744 1271 LK 1272 (1306)
Q Consensus 1271 d~ 1272 (1306)
--
T Consensus 297 ~~ 298 (307)
T KOG0316|consen 297 YQ 298 (307)
T ss_pred ee
Confidence 54
No 87
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=4.9e-20 Score=216.38 Aligned_cols=246 Identities=20% Similarity=0.239 Sum_probs=198.6
Q ss_pred cEEEEEeCCCcEEEEeCCCc--eEEcccCCCCEEEEEEeCC--EEEEEECCCcEEEEeCCCCccceEEEEcc-cCccEEE
Q 000744 1009 KALMNLSSVNATELWHCNEV--TELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDSGKRVLRLIQEVRE-HTRAVTC 1083 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~--~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~-H~~~V~s 1083 (1306)
+.||.|.. ..|.+|+..+. ..+...+...|+++.|+++ +|++|..+|.|.|||..+. +.+.++.+ |...|-+
T Consensus 189 n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~--k~~~~~~~~h~~rvg~ 265 (484)
T KOG0305|consen 189 NVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ--KKTRTLRGSHASRVGS 265 (484)
T ss_pred CeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhc--cccccccCCcCceeEE
Confidence 46777665 68999998753 3444445899999999985 9999999999999999988 78888888 9999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEE
Q 000744 1084 LYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKS 1163 (1306)
Q Consensus 1084 l~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~s 1163 (1306)
++|+ +..+.+|+.||.|.++|++..+...-....|...|..+. +++|+.
T Consensus 266 laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLk-------ws~d~~---------------------- 314 (484)
T KOG0305|consen 266 LAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLK-------WSPDGN---------------------- 314 (484)
T ss_pred Eecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeE-------ECCCCC----------------------
Confidence 9997 678999999999999999987411111223445566655 555555
Q ss_pred EEEeCCEEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeC--CcEEEEEE-ecCCCEEEEEECCCCceE
Q 000744 1164 LVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHN--GLLFAGGS-SVDGTAGKVFSISSKTAV 1239 (1306)
Q Consensus 1164 l~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~--~~~llas~-s~Dg~~I~IWD~~t~~~l 1239 (1306)
++++|+.|+.+.|||.....+...+ ..|. .|..++|+| .++++.+| +.|+ +|++||+.++..+
T Consensus 315 ------~lASGgnDN~~~Iwd~~~~~p~~~~------~~H~aAVKA~awcP~q~~lLAsGGGs~D~-~i~fwn~~~g~~i 381 (484)
T KOG0305|consen 315 ------QLASGGNDNVVFIWDGLSPEPKFTF------TEHTAAVKALAWCPWQSGLLATGGGSADR-CIKFWNTNTGARI 381 (484)
T ss_pred ------eeccCCCccceEeccCCCccccEEE------eccceeeeEeeeCCCccCceEEcCCCccc-EEEEEEcCCCcEe
Confidence 7999999999999999777766644 4677 999999984 45555444 4555 9999999999999
Q ss_pred EEEecCCCEEEEEEcCc---EEEE-EECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCCCccC
Q 000744 1240 GSFTTGIDIQHLAVNSD---FIFT-ATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1240 ~~l~~~~~V~sla~spd---~Las-gs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~~La 1306 (1306)
..+..+..|.++.|++. ++.+ |-.++.|.||+..+.+.+..+.+ |..+|..+++||||..++
T Consensus 382 ~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~g-----H~~RVl~la~SPdg~~i~ 447 (484)
T KOG0305|consen 382 DSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLG-----HTSRVLYLALSPDGETIV 447 (484)
T ss_pred cccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecC-----CcceeEEEEECCCCCEEE
Confidence 99999999999999998 3443 44678999999999999999986 889999999999998874
No 88
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=7e-21 Score=220.09 Aligned_cols=233 Identities=18% Similarity=0.258 Sum_probs=190.2
Q ss_pred cEEEEEeCCCcEEEEeCCCc--------eEEcccCCCCEEEEEEeC--CEEEEEECCCcEEEEeCCCCccceEEEEcccC
Q 000744 1009 KALMNLSSVNATELWHCNEV--------TELDSSTNGEVLSLIHLK--GRVLSSHSDGTIKMWDSGKRVLRLIQEVREHT 1078 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~--------~~i~~~H~~~V~sl~fsp--d~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~ 1078 (1306)
++|.|||.||.|++|++... ......|..+|..+.... ..|+|+|.|-+|++|+...+..-|+.++..|+
T Consensus 38 ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~ 117 (735)
T KOG0308|consen 38 RYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHK 117 (735)
T ss_pred ceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhccc
Confidence 68999999999999998742 223457899999987765 48999999999999999876445888999999
Q ss_pred ccEEEEEE-cCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEecc
Q 000744 1079 RAVTCLYV-PSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINF 1157 (1306)
Q Consensus 1079 ~~V~sl~f-spdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~ 1157 (1306)
+.|.|+++ -++...++|||.|+.|.+||++++....+..+. .-.+.++. .++
T Consensus 118 DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n-~~t~~sl~--------------------------sG~ 170 (735)
T KOG0308|consen 118 DYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFN-NVTVNSLG--------------------------SGP 170 (735)
T ss_pred chheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcc-ccccccCC--------------------------CCC
Confidence 99999999 778899999999999999999987321111111 00111110 036
Q ss_pred CCCeEEEEEeCC--EEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECC
Q 000744 1158 NKHVKSLVMTGD--KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSIS 1234 (1306)
Q Consensus 1158 ~~~V~sl~~s~d--~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~ 1234 (1306)
...|.+++.++. .+++|+..+.+++||.++++.+. ++.||+ .|+.+..++++.-+.++|.|| +|++||+.
T Consensus 171 k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kim------kLrGHTdNVr~ll~~dDGt~~ls~sSDg-tIrlWdLg 243 (735)
T KOG0308|consen 171 KDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIM------KLRGHTDNVRVLLVNDDGTRLLSASSDG-TIRLWDLG 243 (735)
T ss_pred ccceeeeecCCcceEEEecCcccceEEecccccccee------eeeccccceEEEEEcCCCCeEeecCCCc-eEEeeecc
Confidence 677888888876 68999999999999999988776 466888 999999998887777777898 99999999
Q ss_pred CCceEEEEe-cCCCEEEEEEcCc--EEEEEECCCcEEEEECCCC
Q 000744 1235 SKTAVGSFT-TGIDIQHLAVNSD--FIFTATKCGTIEVWLKERV 1275 (1306)
Q Consensus 1235 t~~~l~~l~-~~~~V~sla~spd--~Lasgs~Dg~I~IWd~~tg 1275 (1306)
..+|+.++. |...|+++..+|+ .+++|+.||.|..=|+.+.
T Consensus 244 qQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 244 QQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred ccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 999999998 5566999999998 9999999999999999874
No 89
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.85 E-value=1.6e-19 Score=189.56 Aligned_cols=269 Identities=12% Similarity=0.150 Sum_probs=204.9
Q ss_pred ccccccccccccc-----cEEEEEeCCCcEEEEeCCC--ceEEcccCCCCEEEEEEeC--CEEEEEECCCcEEEEeCCCC
Q 000744 996 KLKKYSAVVTDIQ-----KALMNLSSVNATELWHCNE--VTELDSSTNGEVLSLIHLK--GRVLSSHSDGTIKMWDSGKR 1066 (1306)
Q Consensus 996 ~l~ghs~~V~~i~-----~~Lasgs~Dg~I~IWd~~~--~~~i~~~H~~~V~sl~fsp--d~LaSgs~Dg~I~vWd~~t~ 1066 (1306)
.++||...++.+. ++|.|++.|.++.+|-... ......+|++.|+|+..+. +.++||+.|.++++||+++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 3678888887776 8999999999999997643 4456789999999998775 49999999999999999999
Q ss_pred ccceEEEEcccCccEEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCc-----eeEEEe-ecCCCCeEEEEe---CCc
Q 000744 1067 VLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLD-----KTIRVWSIKPEE-----IHCLQV-HNVKEAVHELTA---NAE 1132 (1306)
Q Consensus 1067 ~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~D-----gtI~VWdi~~~~-----~~~i~~-~~~~~~V~sl~~---~~~ 1132 (1306)
+++.+++ ...+|..+.|+++|++++..+.+ +.|.++|++... ..++.. ..+...++..-| +..
T Consensus 85 --k~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ 161 (327)
T KOG0643|consen 85 --KQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGET 161 (327)
T ss_pred --cEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCE
Confidence 8888885 46789999999999988877643 679999998432 122222 234477788777 455
Q ss_pred EEEEEcCCCeEEEEEecCCEEEe----ccCCCeEEEEEeCC--EEEEEECCCcEEEEECCCCceeEEecCcccccCCccE
Q 000744 1133 IACFVSPATGVKVYNWSGAIKHI----NFNKHVKSLVMTGD--KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQTI 1206 (1306)
Q Consensus 1133 ~v~~s~dg~~I~i~~~~~~~~l~----~~~~~V~sl~~s~d--~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~I 1206 (1306)
++..+.+|+ |..|+......+. .|...|+.+.++++ ++++||.|.+-++||..+.+.+++|.... ||
T Consensus 162 ii~Ghe~G~-is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~------Pv 234 (327)
T KOG0643|consen 162 IIAGHEDGS-ISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTER------PV 234 (327)
T ss_pred EEEecCCCc-EEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecc------cc
Confidence 666666666 8899888654443 37889999999987 79999999999999999999999876433 89
Q ss_pred EEEEEeCCcE-EEEEEecCCCEEEEEECCCCc------------eEEEEec-CCCEEEEEEcCc--EEEEEECCCcEEEE
Q 000744 1207 HSLHMHNGLL-FAGGSSVDGTAGKVFSISSKT------------AVGSFTT-GIDIQHLAVNSD--FIFTATKCGTIEVW 1270 (1306)
Q Consensus 1207 ~sl~~s~~~~-llas~s~Dg~~I~IWD~~t~~------------~l~~l~~-~~~V~sla~spd--~Lasgs~Dg~I~IW 1270 (1306)
++.+++|... ++.+|+.+..-|.-=+.+.|+ .+..+++ -++|++++|||+ ..++|++||.|++.
T Consensus 235 N~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 235 NTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred cceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEE
Confidence 9999987443 333433343223222223332 3444554 467999999999 88899999999998
Q ss_pred ECCC
Q 000744 1271 LKER 1274 (1306)
Q Consensus 1271 d~~t 1274 (1306)
....
T Consensus 315 ~Fd~ 318 (327)
T KOG0643|consen 315 HFDS 318 (327)
T ss_pred Eecc
Confidence 7654
No 90
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.85 E-value=3.6e-20 Score=245.45 Aligned_cols=325 Identities=17% Similarity=0.157 Sum_probs=263.2
Q ss_pred HHhChhhHHHhhcCCCCHHHHHHHHHHHHHHhhhcCCCcccccccccccchHHHHHHHhcCCcHHHHHHHHHHHHHHhcc
Q 000744 486 IINGLKPYVTCLCTSENLQECETAVLAIARLWKESKGDPGVHAYLLKPTIINGFAEILSASLSREVLRTSVYILSELMVA 565 (1306)
Q Consensus 486 ~~~~~~~~l~~Ll~s~~~~~~e~Av~~i~~L~~~~~~~~~~~~~i~~~~~I~~Lv~~L~~~~~~~~~e~Av~~L~~L~s~ 565 (1306)
...++++.++.|+.+.+.+.|+.++..|..|+..+. +.+..|.+.|+|+.||++|.++ +.++|+.|+.+|.+|+..
T Consensus 401 ~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~---e~~~aIi~~ggIp~LV~LL~s~-s~~iQ~~A~~~L~nLa~~ 476 (2102)
T PLN03200 401 NHAEAKKVLVGLITMATADVQEELIRALSSLCCGKG---GLWEALGGREGVQLLISLLGLS-SEQQQEYAVALLAILTDE 476 (2102)
T ss_pred HhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCH---HHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHcC
Confidence 345778899999999999999999999999998765 4557899999999999999999 899999999999999888
Q ss_pred CccccccccccCCchHHHHHHHhcCh----HHHHHHHhccCC---CHHH-HhhCCchHHHHHHhhcCCccccchhcccCc
Q 000744 566 DESVGDILTSVDSDFDCLAALLKNGL----GEAAVLIYQLRP---AFAQ-LSAHEFIPSLVQLVLNKTEEFDELQFVMEP 637 (1306)
Q Consensus 566 ~~~~~~~I~~~~~~i~~Lv~lLk~g~----~~Aa~aL~~L~~---~~~~-i~~~g~i~~Lv~ll~~g~~~~~~~~~~~~~ 637 (1306)
+++++..|.+ .|+||+|+++|++|. ++|+.+|.||+. +... |.+.|+||+|+++|++|+.. .+
T Consensus 477 ndenr~aIie-aGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~--------~q 547 (2102)
T PLN03200 477 VDESKWAITA-AGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPK--------GQ 547 (2102)
T ss_pred CHHHHHHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHH--------HH
Confidence 8889999997 899999999999876 899999999986 4444 45789999999999998732 22
Q ss_pred hHHHHHHHHHHHccCCCCC-----------c------------------hhh---hhHhhcCCCHHHHHhhc--CChhHH
Q 000744 638 KDAAIEMLEQILMGGDKKS-----------R------------------SIT---ALSLISANGIPALIKCL--DRVEVR 683 (1306)
Q Consensus 638 k~aa~~lL~~l~~~~~~~~-----------~------------------~~n---~~~i~~~g~i~~Lv~~l--~~~~~~ 683 (1306)
+.|+ ..|.+|+...+... + ..+ ...+...|||+.|+++| ++.+.+
T Consensus 548 ~~Aa-~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ik 626 (2102)
T PLN03200 548 EIAA-KTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQ 626 (2102)
T ss_pred HHHH-HHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHH
Confidence 3343 34444543222110 0 000 11122579999999999 889999
Q ss_pred HHHHHHHHhhhhccchhHHHHHHhcccchhhhhhhcCCchhHhHHHHHHHHHHhcchhhhHHHHHHHhhhcCCcchHHHH
Q 000744 684 RSIVSILLCCMHADKSCKTLIAKRIELSHVLDLFHDGNDSVRGICINFLSELVLLNRRTFSNQILQVIRDEGSFSTMHTF 763 (1306)
Q Consensus 684 ~~~~~~L~~~~~~~~~~r~~i~~~~~~~~l~~ll~~g~~~~k~~a~~~L~~L~~~~~~~~~~~~l~~i~~~g~~~~m~~l 763 (1306)
..|+.+|.+....+...+..+...++++|++.||.+++...+..|+.+|..|....+. .-...+.+.|++++ |
T Consensus 627 k~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~----~q~~~~v~~GaV~p---L 699 (2102)
T PLN03200 627 EKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKE----NRKVSYAAEDAIKP---L 699 (2102)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCH----HHHHHHHHcCCHHH---H
Confidence 9999999998888888889999999999999999999999999999999999864442 22234567899998 8
Q ss_pred HHHhhcCCCcchhhHHHHHHhhhcccCCccccccHHHHHHHHHHHHhcCCCchHHHHHHHHHHhccceee
Q 000744 764 LVYLQMAPMEQQPATASLLLQLDLLVEPRKMSMYREEAVEALIEALRRKDFPNSQMMALDALLSLTGRFT 833 (1306)
Q Consensus 764 l~~l~~~~~~~~~~~A~~l~~l~~l~~~~~~~~~reeai~~l~~~l~~~~~~~~q~~aa~~l~~l~g~~s 833 (1306)
+.+|+....+-+..++..|..+....+- +..+.++++|++|++-|+++. ++.++.|+.||.+|.-+|+
T Consensus 700 ~~LL~~~d~~v~e~Al~ALanLl~~~e~-~~ei~~~~~I~~Lv~lLr~G~-~~~k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 700 IKLAKSSSIEVAEQAVCALANLLSDPEV-AAEALAEDIILPLTRVLREGT-LEGKRNAARALAQLLKHFP 767 (2102)
T ss_pred HHHHhCCChHHHHHHHHHHHHHHcCchH-HHHHHhcCcHHHHHHHHHhCC-hHHHHHHHHHHHHHHhCCC
Confidence 8888888888888899888888765554 344557999999999999885 6889999999999976665
No 91
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.85 E-value=5.2e-20 Score=196.06 Aligned_cols=255 Identities=15% Similarity=0.165 Sum_probs=195.6
Q ss_pred cEEEEEeCCCcEEEEeCCC--------------------ceEEcccCCCCEEEEEEeCC--EEEEEECCCcEEEEeCCCC
Q 000744 1009 KALMNLSSVNATELWHCNE--------------------VTELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDSGKR 1066 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~--------------------~~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t~ 1066 (1306)
.++||||.|..|+|.|++. ....+..|..+|+++.|+|. .|++|+.|++|+++|+.+.
T Consensus 125 ~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~ 204 (430)
T KOG0640|consen 125 SLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKT 204 (430)
T ss_pred cEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccH
Confidence 8999999999999999861 33455679999999999994 9999999999999999764
Q ss_pred ccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEe----ecCCCCeEEEEeCCcEEEEEcCCCe
Q 000744 1067 VLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQV----HNVKEAVHELTANAEIACFVSPATG 1142 (1306)
Q Consensus 1067 ~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~----~~~~~~V~sl~~~~~~v~~s~dg~~ 1142 (1306)
..+.-...-....+|.++.|+|.|.+++.|..-.++++||+++. +|+.. .+|.+.|+++. +++.|+.
T Consensus 205 saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~--QcfvsanPd~qht~ai~~V~-------Ys~t~~l 275 (430)
T KOG0640|consen 205 SAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTY--QCFVSANPDDQHTGAITQVR-------YSSTGSL 275 (430)
T ss_pred HHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccce--eEeeecCcccccccceeEEE-------ecCCccE
Confidence 22222222234568999999999999999999999999999997 44433 34889999999 5555554
Q ss_pred EEEEEecCCEEEec-------------c-CCCeEEEEEeCC--EEEEEECCCcEEEEECCCCceeEEecCcccccCCc-c
Q 000744 1143 VKVYNWSGAIKHIN-------------F-NKHVKSLVMTGD--KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-T 1205 (1306)
Q Consensus 1143 I~i~~~~~~~~l~~-------------~-~~~V~sl~~s~d--~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~ 1205 (1306)
....+.+|.+++|+ | ...|++..|..+ ++++.+.|..+++|.+.++.++..|.|... .|.. -
T Consensus 276 YvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~-tgrq~~ 354 (430)
T KOG0640|consen 276 YVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGT-TGRQKH 354 (430)
T ss_pred EEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCc-ccchhh
Confidence 44455555555554 3 467999999854 899999999999999999999999987632 2222 2
Q ss_pred EEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEe--cCCCEEEEEEcCc--EEEEEECCCcEEEEECC
Q 000744 1206 IHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFT--TGIDIQHLAVNSD--FIFTATKCGTIEVWLKE 1273 (1306)
Q Consensus 1206 I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~--~~~~V~sla~spd--~Lasgs~Dg~I~IWd~~ 1273 (1306)
-+...|+....|+..-..-.+.+.-||.++...+..+. |++.+..+.-+|. -+++||.|-.+++|-.+
T Consensus 355 rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 355 RTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred hhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 34455666666665543334478999999976655544 6777999999998 89999999999999754
No 92
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=7.9e-19 Score=179.45 Aligned_cols=266 Identities=12% Similarity=0.124 Sum_probs=196.6
Q ss_pred CCCCEEEEEEeCC--EEEEEECCCcEEEEeCCC------C----ccc---eEEEEcccCccEEEEEEcCCCCEEEEEeCC
Q 000744 1035 TNGEVLSLIHLKG--RVLSSHSDGTIKMWDSGK------R----VLR---LIQEVREHTRAVTCLYVPSSGDKLYSGSLD 1099 (1306)
Q Consensus 1035 H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t------~----~~~---~i~~l~~H~~~V~sl~fspdg~~L~Sgs~D 1099 (1306)
....|.+++|+|. ..++|+...+.+|..... + ... .-..-+.|.+.|+|.+|+|+|+++++|+.|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence 4567999999995 888899999998865421 1 001 112335789999999999999999999999
Q ss_pred CcEEEEEcCCCc----eeEEEeecCCCCeEEEEe-----CC-cEE-EEEcCCCeEEEEEec---CCEEEeccCCCeEEE-
Q 000744 1100 KTIRVWSIKPEE----IHCLQVHNVKEAVHELTA-----NA-EIA-CFVSPATGVKVYNWS---GAIKHINFNKHVKSL- 1164 (1306)
Q Consensus 1100 gtI~VWdi~~~~----~~~i~~~~~~~~V~sl~~-----~~-~~v-~~s~dg~~I~i~~~~---~~~~l~~~~~~V~sl- 1164 (1306)
++|++.-++... ..-+...-|.+.|..++| .+ .++ .....+-.|.+.+.. +-.-+.+|.+.|.++
T Consensus 111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly 190 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY 190 (350)
T ss_pred ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEE
Confidence 999998776542 111222236689999999 12 222 222222334444433 234456789999887
Q ss_pred EEeCCEEEEEECCCcEEEEECCCCceeEEecCcccccCCc--cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEE
Q 000744 1165 VMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ--TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSF 1242 (1306)
Q Consensus 1165 ~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~--~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l 1242 (1306)
.|++-.+++|+.|.+|++||++-..++.+......-.|-. .|.++++.|.+.++++|..|. ...+||++.+..++.|
T Consensus 191 swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~ds-sc~lydirg~r~iq~f 269 (350)
T KOG0641|consen 191 SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADS-SCMLYDIRGGRMIQRF 269 (350)
T ss_pred EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCC-ceEEEEeeCCceeeee
Confidence 4666689999999999999999988888766443323322 899999999999999998888 7999999999999999
Q ss_pred e-cCCCEEEEEEcCc--EEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCC
Q 000744 1243 T-TGIDIQHLAVNSD--FIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDG 1302 (1306)
Q Consensus 1243 ~-~~~~V~sla~spd--~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg 1302 (1306)
. |...|.++.|+|. |+.+|+.|..|++-|+. |...+.+....++.|.+.+-.+.|+|..
T Consensus 270 ~phsadir~vrfsp~a~yllt~syd~~ikltdlq-gdla~el~~~vv~ehkdk~i~~rwh~~d 331 (350)
T KOG0641|consen 270 HPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ-GDLAHELPIMVVAEHKDKAIQCRWHPQD 331 (350)
T ss_pred CCCccceeEEEeCCCceEEEEecccceEEEeecc-cchhhcCceEEEEeccCceEEEEecCcc
Confidence 7 5567999999998 99999999999999986 3333333322225688888899999864
No 93
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.84 E-value=4.1e-20 Score=213.98 Aligned_cols=258 Identities=14% Similarity=0.190 Sum_probs=203.9
Q ss_pred cEEEEEeCCCcEEEEeCCCce---------------EEc------------------------ccCCCCEEEEEEeCC--
Q 000744 1009 KALMNLSSVNATELWHCNEVT---------------ELD------------------------SSTNGEVLSLIHLKG-- 1047 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~~---------------~i~------------------------~~H~~~V~sl~fspd-- 1047 (1306)
.-+.|+++|++|++||+..+. .+. .+....|.+++.+|+
T Consensus 393 ~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gq 472 (1080)
T KOG1408|consen 393 GCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQ 472 (1080)
T ss_pred cceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcc
Confidence 569999999999999985310 000 012456999999996
Q ss_pred EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcC---CCCEEEEEeCCCcEEEEEcCCCceeEEEee-cCCCC
Q 000744 1048 RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPS---SGDKLYSGSLDKTIRVWSIKPEEIHCLQVH-NVKEA 1123 (1306)
Q Consensus 1048 ~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fsp---dg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~-~~~~~ 1123 (1306)
+|++|..-|+++||++..- +....+..|...|.|+.|+. ..++|+|++.|+.|.|+|+..+ ...+++. +|...
T Consensus 473 hLAsGDr~GnlrVy~Lq~l--~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn-y~l~qtld~HSss 549 (1080)
T KOG1408|consen 473 HLASGDRGGNLRVYDLQEL--EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN-YDLVQTLDGHSSS 549 (1080)
T ss_pred eecccCccCceEEEEehhh--hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc-cchhhhhcccccc
Confidence 9999999999999999887 67778889999999999986 3468999999999999999875 3344444 47899
Q ss_pred eEEEEe-----CCcEEEEEcCCCeEEEEEec--CCEEEe-c-----cCCCeEEEEEeCC--EEEEEECCCcEEEEECCCC
Q 000744 1124 VHELTA-----NAEIACFVSPATGVKVYNWS--GAIKHI-N-----FNKHVKSLVMTGD--KLYCGCSGYSIQEVDLGNL 1188 (1306)
Q Consensus 1124 V~sl~~-----~~~~v~~s~dg~~I~i~~~~--~~~~l~-~-----~~~~V~sl~~s~d--~L~sgs~Dg~I~iwDl~~~ 1188 (1306)
|+++.| +-.++..+.|.. |..-... +...+. . ....+..|++.|. ++++++.|..|+|||+.+|
T Consensus 550 ITsvKFa~~gln~~MiscGADks-imFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sg 628 (1080)
T KOG1408|consen 550 ITSVKFACNGLNRKMISCGADKS-IMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESG 628 (1080)
T ss_pred eeEEEEeecCCceEEEeccCchh-hheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecccc
Confidence 999998 224444444433 2211111 222222 1 1456788888876 7999999999999999999
Q ss_pred ceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEecCCC-EEEEEEcCc--EEEEEECC
Q 000744 1189 TSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFTTGID-IQHLAVNSD--FIFTATKC 1264 (1306)
Q Consensus 1189 ~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~~~~-V~sla~spd--~Lasgs~D 1264 (1306)
+.++.|++.+ +|. ....+...|.+.|+++++.|. ++.++|..+|+++.++.+|+. |+.+.|.+| .|++.+.|
T Consensus 629 Kq~k~FKgs~---~~eG~lIKv~lDPSgiY~atScsdk-tl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgD 704 (1080)
T KOG1408|consen 629 KQVKSFKGSR---DHEGDLIKVILDPSGIYLATSCSDK-TLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGD 704 (1080)
T ss_pred ceeeeecccc---cCCCceEEEEECCCccEEEEeecCC-ceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCC
Confidence 9999998765 565 667788899999999998888 899999999999999997776 999999999 99999999
Q ss_pred CcEEEEECCC
Q 000744 1265 GTIEVWLKER 1274 (1306)
Q Consensus 1265 g~I~IWd~~t 1274 (1306)
|.|.||.+..
T Consensus 705 gCIFvW~lp~ 714 (1080)
T KOG1408|consen 705 GCIFVWKLPL 714 (1080)
T ss_pred ceEEEEECch
Confidence 9999999863
No 94
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.84 E-value=1.5e-19 Score=202.55 Aligned_cols=273 Identities=17% Similarity=0.210 Sum_probs=214.7
Q ss_pred ccccccccccccccc-----cEEEEEeCCCcEEEEeCCCceEE-------------------c-ccCCCCEEEEEEeCC-
Q 000744 994 LRKLKKYSAVVTDIQ-----KALMNLSSVNATELWHCNEVTEL-------------------D-SSTNGEVLSLIHLKG- 1047 (1306)
Q Consensus 994 l~~l~ghs~~V~~i~-----~~Lasgs~Dg~I~IWd~~~~~~i-------------------~-~~H~~~V~sl~fspd- 1047 (1306)
.+....|.-.+.++. ++.++++.||+|.-|++.+.... . ..|...|.+++.++|
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 345566766665554 79999999999999998532211 1 278889999999997
Q ss_pred -EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEE
Q 000744 1048 -RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHE 1126 (1306)
Q Consensus 1048 -~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~s 1126 (1306)
+|++|+.|..|.||+..+. +.++.+.+|.+.|.+++|-.....+++++.|++|++|++.... ..-..+.|.+.|.+
T Consensus 215 kylatgg~d~~v~Iw~~~t~--ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s-~vetlyGHqd~v~~ 291 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTL--EHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS-YVETLYGHQDGVLG 291 (479)
T ss_pred cEEEecCCCceEEEecCccc--chhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH-HHHHHhCCccceee
Confidence 9999999999999999999 8899999999999999998888899999999999999998753 11123457789999
Q ss_pred EEe--CCcEEEEEcCCCeEEEEEecCCEEE--eccCCCeEEEEEeCC-EEEEEECCCcEEEEECCCCceeEEecCccccc
Q 000744 1127 LTA--NAEIACFVSPATGVKVYNWSGAIKH--INFNKHVKSLVMTGD-KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLL 1201 (1306)
Q Consensus 1127 l~~--~~~~v~~s~dg~~I~i~~~~~~~~l--~~~~~~V~sl~~s~d-~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~ 1201 (1306)
|.. -...+++..-++.+.+|......++ .++.+.+.|++|..+ ++++|+.||.|.+|++.+.+++.++.....+.
T Consensus 292 IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~ 371 (479)
T KOG0299|consen 292 IDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVI 371 (479)
T ss_pred echhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeecccccc
Confidence 886 5566777756666889988754443 467889999999854 89999999999999999999888765322211
Q ss_pred ------CCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCC----ceEEEEecCCCEEEEEEcCc--EEEEE-ECCCcE
Q 000744 1202 ------GKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSK----TAVGSFTTGIDIQHLAVNSD--FIFTA-TKCGTI 1267 (1306)
Q Consensus 1202 ------gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~----~~l~~l~~~~~V~sla~spd--~Lasg-s~Dg~I 1267 (1306)
++. +|++++..++..++++|+.+| .|++|-+.++ +++..+.-.+-|++++|+++ +|++| +....+
T Consensus 372 ~~~~~~~~~~Witsla~i~~sdL~asGS~~G-~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEhRl 450 (479)
T KOG0299|consen 372 PELDPVNGNFWITSLAVIPGSDLLASGSWSG-CVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEHRL 450 (479)
T ss_pred CCccccccccceeeeEecccCceEEecCCCC-ceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEeccccccc
Confidence 223 899999999999999999998 8999999887 45666666777999999887 44444 444444
Q ss_pred EEE
Q 000744 1268 EVW 1270 (1306)
Q Consensus 1268 ~IW 1270 (1306)
--|
T Consensus 451 GRW 453 (479)
T KOG0299|consen 451 GRW 453 (479)
T ss_pred cee
Confidence 334
No 95
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.84 E-value=7.7e-20 Score=242.36 Aligned_cols=318 Identities=22% Similarity=0.144 Sum_probs=257.2
Q ss_pred HHHhChhhHHHhhcCCCCHHHHHHHHHHHHHHhhhcCCCcccccccccccchHHHHHHHhcCCcHHHHHHHHHHHHHHhc
Q 000744 485 TIINGLKPYVTCLCTSENLQECETAVLAIARLWKESKGDPGVHAYLLKPTIINGFAEILSASLSREVLRTSVYILSELMV 564 (1306)
Q Consensus 485 ~~~~~~~~~l~~Ll~s~~~~~~e~Av~~i~~L~~~~~~~~~~~~~i~~~~~I~~Lv~~L~~~~~~~~~e~Av~~L~~L~s 564 (1306)
+...+.++.+..+|.+++...|+.|+.+|.+|+..++ +.+..|+++|+||+|+++|.++ +.++|++|+.+|.||+.
T Consensus 442 Ii~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~nd---enr~aIieaGaIP~LV~LL~s~-~~~iqeeAawAL~NLa~ 517 (2102)
T PLN03200 442 LGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVD---ESKWAITAAGGIPPLVQLLETG-SQKAKEDSATVLWNLCC 517 (2102)
T ss_pred HHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH---HHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhC
Confidence 4566788999999999999999999999999998654 4457899999999999999988 89999999999999966
Q ss_pred cCccccccccccCCchHHHHHHHhcCh----HHHHHHHhccCC------------------------------------C
Q 000744 565 ADESVGDILTSVDSDFDCLAALLKNGL----GEAAVLIYQLRP------------------------------------A 604 (1306)
Q Consensus 565 ~~~~~~~~I~~~~~~i~~Lv~lLk~g~----~~Aa~aL~~L~~------------------------------------~ 604 (1306)
++.+++.+....|+|++|+++|++|. ++|+.+|++|.. .
T Consensus 518 -~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~ 596 (2102)
T PLN03200 518 -HSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVAS 596 (2102)
T ss_pred -CcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcc
Confidence 44455554434899999999999986 789999999941 0
Q ss_pred H----HH-HhhCCchHHHHHHhhcCCccccchhcccCchHHHHHHHHHHHccCCCCCchhhhhHhhcCCCHHHHHhhc--
Q 000744 605 F----AQ-LSAHEFIPSLVQLVLNKTEEFDELQFVMEPKDAAIEMLEQILMGGDKKSRSITALSLISANGIPALIKCL-- 677 (1306)
Q Consensus 605 ~----~~-i~~~g~i~~Lv~ll~~g~~~~~~~~~~~~~k~aa~~lL~~l~~~~~~~~~~~n~~~i~~~g~i~~Lv~~l-- 677 (1306)
. .+ +...|+||.|++||++|++.. +|.|+ .+|.++.+ .++.+...++.+|||++|+.+|
T Consensus 597 ~~d~~~~g~~~~ggL~~Lv~LL~sgs~~i--------kk~Aa-~iLsnL~a-----~~~d~~~avv~agaIpPLV~LLss 662 (2102)
T PLN03200 597 LEDLVREGSAANDALRTLIQLLSSSKEET--------QEKAA-SVLADIFS-----SRQDLCESLATDEIINPCIKLLTN 662 (2102)
T ss_pred hhHHHHHhhhccccHHHHHHHHcCCCHHH--------HHHHH-HHHHHHhc-----CChHHHHHHHHcCCHHHHHHHHhc
Confidence 1 11 124789999999999998433 34555 66677653 3468888999999999999999
Q ss_pred CChhHHHHHHHHHHhhhhc-cchhHHHHHHhcccchhhhhhhcCCchhHhHHHHHHHHHHhcchhhhHHHHHHHhhhcCC
Q 000744 678 DRVEVRRSIVSILLCCMHA-DKSCKTLIAKRIELSHVLDLFHDGNDSVRGICINFLSELVLLNRRTFSNQILQVIRDEGS 756 (1306)
Q Consensus 678 ~~~~~~~~~~~~L~~~~~~-~~~~r~~i~~~~~~~~l~~ll~~g~~~~k~~a~~~L~~L~~~~~~~~~~~~l~~i~~~g~ 756 (1306)
++.+.+..++..|.+.... +...+.++.+.|.++||++||.+.+.+.++.|+.+|..+++.+. ...++.++|+
T Consensus 663 ~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e------~~~ei~~~~~ 736 (2102)
T PLN03200 663 NTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPE------VAAEALAEDI 736 (2102)
T ss_pred CChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCch------HHHHHHhcCc
Confidence 6667777777777765543 34456788999999999999999999999999999999987765 3467778899
Q ss_pred cchHHHHHHHhhcCCCcchhhHHHHHHhhhcccCC---ccccccHHHHHHHHHHHHhcCCCchHHH-HHHHHHHhccc
Q 000744 757 FSTMHTFLVYLQMAPMEQQPATASLLLQLDLLVEP---RKMSMYREEAVEALIEALRRKDFPNSQM-MALDALLSLTG 830 (1306)
Q Consensus 757 ~~~m~~ll~~l~~~~~~~~~~~A~~l~~l~~l~~~---~~~~~~reeai~~l~~~l~~~~~~~~q~-~aa~~l~~l~g 830 (1306)
+++ |+.+||.+++++|.-||..|.+|-.-... -+..+.+.++|.+|+..|+..+.+..+. .|.++|.+|+-
T Consensus 737 I~~---Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~ 811 (2102)
T PLN03200 737 ILP---LTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLAR 811 (2102)
T ss_pred HHH---HHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHh
Confidence 877 99999999999999999999999864432 2366789999999999999998876554 47777777643
No 96
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=6.1e-20 Score=190.65 Aligned_cols=248 Identities=13% Similarity=0.140 Sum_probs=187.0
Q ss_pred cccccccccccc-----cEEEEEeCCCcEEEEeCCC-----ceEEcccCCCCEEEEEEe-C---CEEEEEECCCcEEEEe
Q 000744 997 LKKYSAVVTDIQ-----KALMNLSSVNATELWHCNE-----VTELDSSTNGEVLSLIHL-K---GRVLSSHSDGTIKMWD 1062 (1306)
Q Consensus 997 l~ghs~~V~~i~-----~~Lasgs~Dg~I~IWd~~~-----~~~i~~~H~~~V~sl~fs-p---d~LaSgs~Dg~I~vWd 1062 (1306)
-.+|.++|.+.. +.|||+++|++|||+..+. ....+.+|.++|+.++|- | ++|+|+++||.|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 356788877765 8899999999999999874 334568999999999996 4 4999999999999999
Q ss_pred CCCCccceEEEEcccCccEEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCc-ee-EEEeecCCCCeEEEEeCCcEEEEEc
Q 000744 1063 SGKRVLRLIQEVREHTRAVTCLYVPSS--GDKLYSGSLDKTIRVWSIKPEE-IH-CLQVHNVKEAVHELTANAEIACFVS 1138 (1306)
Q Consensus 1063 ~~t~~~~~i~~l~~H~~~V~sl~fspd--g~~L~Sgs~DgtI~VWdi~~~~-~~-~i~~~~~~~~V~sl~~~~~~v~~s~ 1138 (1306)
-.++++........|+..|++|+|-|. |-.|++++.||+|.|.+++... .. ......|.-.|++++ +.|
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVs-------wap 159 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVS-------WAP 159 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceee-------ecC
Confidence 999988888899999999999999985 5689999999999999988752 11 111123556677776 433
Q ss_pred C---CCeEEEEEecCCEEEeccCCCeEEEEEeCCEEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeCC
Q 000744 1139 P---ATGVKVYNWSGAIKHINFNKHVKSLVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNG 1214 (1306)
Q Consensus 1139 d---g~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~ 1214 (1306)
. |..+ + .+.... ...|++|+.|..|+||+..++. +.-.+++.+|. .|+.++|.|.
T Consensus 160 a~~~g~~~---~-------~~~~~~-------~krlvSgGcDn~VkiW~~~~~~----w~~e~~l~~H~dwVRDVAwaP~ 218 (299)
T KOG1332|consen 160 ASAPGSLV---D-------QGPAAK-------VKRLVSGGCDNLVKIWKFDSDS----WKLERTLEGHKDWVRDVAWAPS 218 (299)
T ss_pred cCCCcccc---c-------cCcccc-------cceeeccCCccceeeeecCCcc----hhhhhhhhhcchhhhhhhhccc
Confidence 3 2100 0 000000 1259999999999999998873 22223577899 9999999864
Q ss_pred ----cEEEEEEecCCCEEEEEECCCC--ceEEEEec--CCCEEEEEEcCc--EEEEEECCCcEEEEECC
Q 000744 1215 ----LLFAGGSSVDGTAGKVFSISSK--TAVGSFTT--GIDIQHLAVNSD--FIFTATKCGTIEVWLKE 1273 (1306)
Q Consensus 1215 ----~~llas~s~Dg~~I~IWD~~t~--~~l~~l~~--~~~V~sla~spd--~Lasgs~Dg~I~IWd~~ 1273 (1306)
...+++++.|| ++.||..+.. +-..++-+ ...++.+.|+.. +|+.++.|+.|.+|.-.
T Consensus 219 ~gl~~s~iAS~SqDg-~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 219 VGLPKSTIASCSQDG-TVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred cCCCceeeEEecCCC-cEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 46788889999 7999987532 22233333 345899999876 99999999999999754
No 97
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.84 E-value=1.1e-19 Score=222.43 Aligned_cols=256 Identities=11% Similarity=0.103 Sum_probs=201.8
Q ss_pred cEEEEEe--CCCcEEEEeCCC--------------ceEEcccCCCCEEEEEEeCC--EEEEEECCCcEEEEeCCC-----
Q 000744 1009 KALMNLS--SVNATELWHCNE--------------VTELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDSGK----- 1065 (1306)
Q Consensus 1009 ~~Lasgs--~Dg~I~IWd~~~--------------~~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t----- 1065 (1306)
..+|||+ .||.++||+.+. .......|.+.|+|+.|++| +||+||+|+.|.||+...
T Consensus 26 ~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~ 105 (942)
T KOG0973|consen 26 VKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGT 105 (942)
T ss_pred eeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcc
Confidence 7799999 899999999763 12233579999999999997 999999999999999872
Q ss_pred -----C------ccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEee-cCCCCeEEEEeCCcE
Q 000744 1066 -----R------VLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVH-NVKEAVHELTANAEI 1133 (1306)
Q Consensus 1066 -----~------~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~-~~~~~V~sl~~~~~~ 1133 (1306)
| .++++..+.+|+..|..++|+|++.+++|+|.|++|.|||.++. .++..+ .|.+.|..+.
T Consensus 106 ~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF--~~~~vl~~H~s~VKGvs----- 178 (942)
T KOG0973|consen 106 VFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF--ELLKVLRGHQSLVKGVS----- 178 (942)
T ss_pred cccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc--eeeeeeecccccccceE-----
Confidence 0 24678889999999999999999999999999999999999987 333333 2446666665
Q ss_pred EEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCCEEEEEECCCcEEEEECCCCceeEEecCccc-ccCCccEEEEEEe
Q 000744 1134 ACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKK-LLGKQTIHSLHMH 1212 (1306)
Q Consensus 1134 v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~-l~gh~~I~sl~~s 1212 (1306)
|.|-|+ +|++-+.|++|++|++.+....+.+..+.. ..+.+.++.+.|+
T Consensus 179 --~DP~Gk----------------------------y~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWS 228 (942)
T KOG0973|consen 179 --WDPIGK----------------------------YFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWS 228 (942)
T ss_pred --ECCccC----------------------------eeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccC
Confidence 556665 899999999999999888777776665432 1222278899999
Q ss_pred CCcEEEEEEe-cC--CCEEEEEECCCCceEEEEe-cCCCEEEEEEcCc-------------------EEEEEECCCcEEE
Q 000744 1213 NGLLFAGGSS-VD--GTAGKVFSISSKTAVGSFT-TGIDIQHLAVNSD-------------------FIFTATKCGTIEV 1269 (1306)
Q Consensus 1213 ~~~~llas~s-~D--g~~I~IWD~~t~~~l~~l~-~~~~V~sla~spd-------------------~Lasgs~Dg~I~I 1269 (1306)
|++.++++.. .+ +.++.|.+-.+.+.-..|- |+.++.++.|+|. .+++||.|++|.|
T Consensus 229 PDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSV 308 (942)
T KOG0973|consen 229 PDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSV 308 (942)
T ss_pred CCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEE
Confidence 9998888752 12 1278999988888777776 5667999999862 5788999999999
Q ss_pred EECCCCeEEEEEecccCCCCCCCeEEEEEcCCCCcc
Q 000744 1270 WLKERVTRVASVKANNSGGGHAKITCLGTGVDGHPY 1305 (1306)
Q Consensus 1270 Wd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~~L 1305 (1306)
|.....+++..+.. -....|.+++|+|||..|
T Consensus 309 W~T~~~RPl~vi~~----lf~~SI~DmsWspdG~~L 340 (942)
T KOG0973|consen 309 WNTALPRPLFVIHN----LFNKSIVDMSWSPDGFSL 340 (942)
T ss_pred EecCCCCchhhhhh----hhcCceeeeeEcCCCCeE
Confidence 99987777666541 123589999999999754
No 98
>PTZ00420 coronin; Provisional
Probab=99.84 E-value=4.4e-19 Score=216.69 Aligned_cols=225 Identities=12% Similarity=0.089 Sum_probs=160.8
Q ss_pred ccccccccccccccccc------cEEEEEeCCCcEEEEeCCCc----------eEEcccCCCCEEEEEEeCC---EEEEE
Q 000744 992 GTLRKLKKYSAVVTDIQ------KALMNLSSVNATELWHCNEV----------TELDSSTNGEVLSLIHLKG---RVLSS 1052 (1306)
Q Consensus 992 ~~l~~l~ghs~~V~~i~------~~Lasgs~Dg~I~IWd~~~~----------~~i~~~H~~~V~sl~fspd---~LaSg 1052 (1306)
.++..+++|.+.|.++. .+|+||+.||+|+|||+.+. .....+|.+.|.+++|+|+ .+++|
T Consensus 65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg 144 (568)
T PTZ00420 65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS 144 (568)
T ss_pred ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE
Confidence 45678899999998775 68999999999999998642 1245789999999999994 56899
Q ss_pred ECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEee-cCCCCeEEEEeCC
Q 000744 1053 HSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVH-NVKEAVHELTANA 1131 (1306)
Q Consensus 1053 s~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~-~~~~~V~sl~~~~ 1131 (1306)
+.||+|++||+.++ +.+..+. |...|++++|+|+|.+|++++.|++|+|||+++++ .+..+ .|.+.+....+.
T Consensus 145 S~DgtIrIWDl~tg--~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~--~i~tl~gH~g~~~s~~v~- 218 (568)
T PTZ00420 145 GFDSFVNIWDIENE--KRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE--IASSFHIHDGGKNTKNIW- 218 (568)
T ss_pred eCCCeEEEEECCCC--cEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCc--EEEEEecccCCceeEEEE-
Confidence 99999999999998 6666664 66789999999999999999999999999999874 22222 233333322200
Q ss_pred cEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCCEEEEEECCC----cEEEEECCC-CceeEEecCcccccCCc-c
Q 000744 1132 EIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGDKLYCGCSGY----SIQEVDLGN-LTSTTFYAGTKKLLGKQ-T 1205 (1306)
Q Consensus 1132 ~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~Dg----~I~iwDl~~-~~~~~~~~~~~~l~gh~-~ 1205 (1306)
...+++++ +++++++.|+ +|++||+++ ++++..+. +..+. .
T Consensus 219 -~~~fs~d~----------------------------~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~----ld~~~~~ 265 (568)
T PTZ00420 219 -IDGLGGDD----------------------------NYILSTGFSKNNMREMKLWDLKNTTSALVTMS----IDNASAP 265 (568)
T ss_pred -eeeEcCCC----------------------------CEEEEEEcCCCCccEEEEEECCCCCCceEEEE----ecCCccc
Confidence 00012232 2678877764 799999996 55555432 11222 3
Q ss_pred EEEEEEeCCcEEEEEEecCCCEEEEEECCCCce--EEEEecCCCEEEEEEcCc
Q 000744 1206 IHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTA--VGSFTTGIDIQHLAVNSD 1256 (1306)
Q Consensus 1206 I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~--l~~l~~~~~V~sla~spd 1256 (1306)
+......+++.++++|+.|+ +|++|++..+.. +..+.+..++.+++|.|+
T Consensus 266 L~p~~D~~tg~l~lsGkGD~-tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pk 317 (568)
T PTZ00420 266 LIPHYDESTGLIYLIGKGDG-NCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPK 317 (568)
T ss_pred eEEeeeCCCCCEEEEEECCC-eEEEEEccCCcEEeecccccCCCccceEEccc
Confidence 33333346677666776788 899999987642 223334567899999997
No 99
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.83 E-value=2.9e-19 Score=198.43 Aligned_cols=224 Identities=17% Similarity=0.300 Sum_probs=186.9
Q ss_pred CCCEEEEEEeC--CEEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcee
Q 000744 1036 NGEVLSLIHLK--GRVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIH 1113 (1306)
Q Consensus 1036 ~~~V~sl~fsp--d~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~ 1113 (1306)
...++++...+ +.+.+|+.|.++.++|..++ +.+.+++||...|+.+.|+|+...+++++.|..|+||...... .
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~--q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s-~ 295 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSN--QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS-E 295 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchh--hhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc-C
Confidence 34566777666 68999999999999999998 8999999999999999999999999999999999999987653 1
Q ss_pred EEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCCEEEEEECCCcEEEEECCCCceeEE
Q 000744 1114 CLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGDKLYCGCSGYSIQEVDLGNLTSTTF 1193 (1306)
Q Consensus 1114 ~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~ 1193 (1306)
......|..+|+.+. ..|.| +||++++.||++-+.|++++..+..
T Consensus 296 ~~~~~~h~~~V~~ls-------~h~tg----------------------------eYllsAs~d~~w~Fsd~~~g~~lt~ 340 (506)
T KOG0289|consen 296 PTSSRPHEEPVTGLS-------LHPTG----------------------------EYLLSASNDGTWAFSDISSGSQLTV 340 (506)
T ss_pred ccccccccccceeee-------eccCC----------------------------cEEEEecCCceEEEEEccCCcEEEE
Confidence 111223445555555 44444 3899999999999999999988764
Q ss_pred ecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEec-CCCEEEEEEcCc--EEEEEECCCcEEE
Q 000744 1194 YAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFTT-GIDIQHLAVNSD--FIFTATKCGTIEV 1269 (1306)
Q Consensus 1194 ~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~-~~~V~sla~spd--~Lasgs~Dg~I~I 1269 (1306)
.... +.. .+++.+||||++++++|..|+ .++|||+.++..+..|.+ .++|..++|+.+ |++++++|+.|++
T Consensus 341 vs~~----~s~v~~ts~~fHpDgLifgtgt~d~-~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~l 415 (506)
T KOG0289|consen 341 VSDE----TSDVEYTSAAFHPDGLIFGTGTPDG-VVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKL 415 (506)
T ss_pred Eeec----cccceeEEeeEcCCceEEeccCCCc-eEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEE
Confidence 3311 223 799999999999999999998 899999999999999985 567999999998 9999999999999
Q ss_pred EECCCCeEEEEEecccCCCCCCCeEEEEEcCCCCccC
Q 000744 1270 WLKERVTRVASVKANNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1270 Wd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~~La 1306 (1306)
||+++.+.++++.. ....+|.++.|++.|++|+
T Consensus 416 wDLRKl~n~kt~~l----~~~~~v~s~~fD~SGt~L~ 448 (506)
T KOG0289|consen 416 WDLRKLKNFKTIQL----DEKKEVNSLSFDQSGTYLG 448 (506)
T ss_pred EEehhhcccceeec----cccccceeEEEcCCCCeEE
Confidence 99999999999884 2224799999999999875
No 100
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.83 E-value=5.7e-19 Score=204.62 Aligned_cols=291 Identities=16% Similarity=0.180 Sum_probs=225.6
Q ss_pred cEEEEEeCCCcEEEEeCCCceEE-----cccCCCCEEEEEEeC-------------CEEEEEECCCcEEEEeCCCCccce
Q 000744 1009 KALMNLSSVNATELWHCNEVTEL-----DSSTNGEVLSLIHLK-------------GRVLSSHSDGTIKMWDSGKRVLRL 1070 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~~~i-----~~~H~~~V~sl~fsp-------------d~LaSgs~Dg~I~vWd~~t~~~~~ 1070 (1306)
+.|..-..|..++|||++...++ ...|..-||+|.--| ..+.|++.||+|++||+..+....
T Consensus 337 ~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~ 416 (1080)
T KOG1408|consen 337 DKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQ 416 (1080)
T ss_pred ceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccc
Confidence 56778889999999999864443 346788888886543 279999999999999997531100
Q ss_pred E-----------EE------------------------EcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEE
Q 000744 1071 I-----------QE------------------------VREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCL 1115 (1306)
Q Consensus 1071 i-----------~~------------------------l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i 1115 (1306)
+ .. .-+....|.+++.+|+|++|++|..-|+++||++..-+..+
T Consensus 417 vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~- 495 (1080)
T KOG1408|consen 417 VYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTC- 495 (1080)
T ss_pred eeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhh-
Confidence 1 00 01123468999999999999999999999999998754222
Q ss_pred EeecCCCCeEEEEe-----CCcEEEEEcCCCeEEEEEecCCEEE----eccCCCeEEEEEeCC----EEEEEECCCcEEE
Q 000744 1116 QVHNVKEAVHELTA-----NAEIACFVSPATGVKVYNWSGAIKH----INFNKHVKSLVMTGD----KLYCGCSGYSIQE 1182 (1306)
Q Consensus 1116 ~~~~~~~~V~sl~~-----~~~~v~~s~dg~~I~i~~~~~~~~l----~~~~~~V~sl~~s~d----~L~sgs~Dg~I~i 1182 (1306)
..-.|...|.++.| ...++.-...++.|.+++...+..+ -+|...|+++.|..+ .+++++.|..|.+
T Consensus 496 ~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimF 575 (1080)
T KOG1408|consen 496 FMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF 575 (1080)
T ss_pred heecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhhe
Confidence 22346689999998 3355556667788999998765433 468999999999843 5899999998865
Q ss_pred EECCCCceeEEecCcccccCCccEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEec----CCCEEEEEEcCc--
Q 000744 1183 VDLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFTT----GIDIQHLAVNSD-- 1256 (1306)
Q Consensus 1183 wDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~----~~~V~sla~spd-- 1256 (1306)
--.+.......|..+....+|..++.+.+.|...++++++.|. .|+|||+.+++.++.|++ .+....+..+|.
T Consensus 576 r~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDr-nirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgi 654 (1080)
T KOG1408|consen 576 RVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDR-NIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGI 654 (1080)
T ss_pred ehhccccCceeccccccccccceEEEeeeCCCcceEEEEeccc-ceEEEeccccceeeeecccccCCCceEEEEECCCcc
Confidence 4444333344455444445556899999999999999999998 699999999999999984 355788888887
Q ss_pred EEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCCCccC
Q 000744 1257 FIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1257 ~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~~La 1306 (1306)
|+++.+.|.++.++|+.+|+++.++.+ |...|+.+.|.+|-+.|+
T Consensus 655 Y~atScsdktl~~~Df~sgEcvA~m~G-----HsE~VTG~kF~nDCkHlI 699 (1080)
T KOG1408|consen 655 YLATSCSDKTLCFVDFVSGECVAQMTG-----HSEAVTGVKFLNDCKHLI 699 (1080)
T ss_pred EEEEeecCCceEEEEeccchhhhhhcC-----cchheeeeeecccchhhe
Confidence 999999999999999999999999986 778999999999988764
No 101
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=1.6e-19 Score=192.50 Aligned_cols=257 Identities=13% Similarity=0.158 Sum_probs=192.2
Q ss_pred EEcccCCCCEEEEEEeC--CEEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 000744 1030 ELDSSTNGEVLSLIHLK--GRVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSI 1107 (1306)
Q Consensus 1030 ~i~~~H~~~V~sl~fsp--d~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi 1107 (1306)
..+.||+..|+.++-.. ..+.+++.|.+-+||.++++ .|+.++.||.+.|++|.|++.+.+++++|.|++-.||..
T Consensus 142 re~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg--~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~ 219 (481)
T KOG0300|consen 142 RELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESG--ACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKA 219 (481)
T ss_pred hhhcccccceeeehhhcCCcceeecccccceeEEeeccc--cceeeecccccceeeEEeccccceEEEccCCcchHHHHH
Confidence 34579999999998865 38999999999999999999 999999999999999999999999999999999999983
Q ss_pred CCC----ceeEEEeecCCCCeEEEEe--CCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEe--CCEEEEEECCCc
Q 000744 1108 KPE----EIHCLQVHNVKEAVHELTA--NAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMT--GDKLYCGCSGYS 1179 (1306)
Q Consensus 1108 ~~~----~~~~i~~~~~~~~V~sl~~--~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s--~d~L~sgs~Dg~ 1179 (1306)
.-. +...-..+.....+.+-.- ...--....||..|++- ...+.+|.+.|.+..|- ++.+++++.|.+
T Consensus 220 av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvP----l~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRT 295 (481)
T KOG0300|consen 220 AVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVP----LMRLTGHRAVVSACDWLAGGQQMVTASWDRT 295 (481)
T ss_pred hhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeee----eeeeeccccceEehhhhcCcceeeeeecccc
Confidence 211 0000000100001100000 00001123455444432 23455688888888886 558999999999
Q ss_pred EEEEECCCCceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCC-ceEEEEecCC-CEEEEEEcCc
Q 000744 1180 IQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSK-TAVGSFTTGI-DIQHLAVNSD 1256 (1306)
Q Consensus 1180 I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~-~~l~~l~~~~-~V~sla~spd 1256 (1306)
..+||+.+|..+.. +.||. ..+.++-+|...++++++.|. +.++||++.. +.+..|++|. .|+++.|.-+
T Consensus 296 AnlwDVEtge~v~~------LtGHd~ELtHcstHptQrLVvTsSrDt-TFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d 368 (481)
T KOG0300|consen 296 ANLWDVETGEVVNI------LTGHDSELTHCSTHPTQRLVVTSSRDT-TFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD 368 (481)
T ss_pred ceeeeeccCceecc------ccCcchhccccccCCcceEEEEeccCc-eeEeccchhhcceeeeecccccceeEEEEecC
Confidence 99999999999985 44677 888889999999999999998 8999999853 4567788654 5999999988
Q ss_pred -EEEEEECCCcEEEEECCCC-eEEEEEecccCCCCCCCeEEEEEcCCCCcc
Q 000744 1257 -FIFTATKCGTIEVWLKERV-TRVASVKANNSGGGHAKITCLGTGVDGHPY 1305 (1306)
Q Consensus 1257 -~Lasgs~Dg~I~IWd~~tg-~~l~~l~~~~~~~~~~~V~slafSpdg~~L 1305 (1306)
.+++||+|.+|+|||+++. .++.++.. ..+++.++.+..+..|
T Consensus 369 d~vVSgSDDrTvKvWdLrNMRsplATIRt------dS~~NRvavs~g~~iI 413 (481)
T KOG0300|consen 369 DRVVSGSDDRTVKVWDLRNMRSPLATIRT------DSPANRVAVSKGHPII 413 (481)
T ss_pred CceeecCCCceEEEeeeccccCcceeeec------CCccceeEeecCCceE
Confidence 9999999999999999864 56777763 3466666666655544
No 102
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.83 E-value=1.5e-17 Score=191.29 Aligned_cols=279 Identities=12% Similarity=0.079 Sum_probs=192.4
Q ss_pred cEEEEEeCCCcEEEEeCCCce--EEcccCCCCEEEEEEeCC--EE-EEEECCCcEEEEeCCCCccceEEEEcccCccEEE
Q 000744 1009 KALMNLSSVNATELWHCNEVT--ELDSSTNGEVLSLIHLKG--RV-LSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTC 1083 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~~--~i~~~H~~~V~sl~fspd--~L-aSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~s 1083 (1306)
.+++|++.|+.|++||..+.. .....| ..+.+++|+|+ .+ ++++.|+.|++||..++ +.+..+..+.. +..
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~--~~~~~~~~~~~-~~~ 77 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATG--EVIGTLPSGPD-PEL 77 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCC--cEEEeccCCCC-ccE
Confidence 368899999999999987532 233333 34678999986 44 67778999999999988 66666665544 567
Q ss_pred EEEcCCCCEEEE-EeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEe--CCcEEEEEc-CCCeEEEEEecCCEEE--ecc
Q 000744 1084 LYVPSSGDKLYS-GSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTA--NAEIACFVS-PATGVKVYNWSGAIKH--INF 1157 (1306)
Q Consensus 1084 l~fspdg~~L~S-gs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~--~~~~v~~s~-dg~~I~i~~~~~~~~l--~~~ 1157 (1306)
+.|+|+++.+++ ++.|+.|++||+.++ ..+..+.....+.++.| ++..+.... ++..+..|+....... ...
T Consensus 78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~--~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~ 155 (300)
T TIGR03866 78 FALHPNGKILYIANEDDNLVTVIDIETR--KVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV 155 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCC--eEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc
Confidence 899999987765 456899999999886 33444443345677776 333333333 3344455555432221 123
Q ss_pred CCCeEEEEEeCC--EEE-EEECCCcEEEEECCCCceeEEecCccc-ccCCc-cEEEEEEeCCcEE-EEEEecCCCEEEEE
Q 000744 1158 NKHVKSLVMTGD--KLY-CGCSGYSIQEVDLGNLTSTTFYAGTKK-LLGKQ-TIHSLHMHNGLLF-AGGSSVDGTAGKVF 1231 (1306)
Q Consensus 1158 ~~~V~sl~~s~d--~L~-sgs~Dg~I~iwDl~~~~~~~~~~~~~~-l~gh~-~I~sl~~s~~~~l-las~s~Dg~~I~IW 1231 (1306)
...+.++.|+++ +++ ++..++.|++||+.+++....+..... ..... ....+.|++++.+ +++.+.++ .|.+|
T Consensus 156 ~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~-~i~v~ 234 (300)
T TIGR03866 156 DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPAN-RVAVV 234 (300)
T ss_pred CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCC-eEEEE
Confidence 345677888865 454 445699999999999887665432110 00011 3346788876654 33333344 79999
Q ss_pred ECCCCceEEEEecCCCEEEEEEcCc--EEEEE-ECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcC
Q 000744 1232 SISSKTAVGSFTTGIDIQHLAVNSD--FIFTA-TKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGV 1300 (1306)
Q Consensus 1232 D~~t~~~l~~l~~~~~V~sla~spd--~Lasg-s~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSp 1300 (1306)
|..+++.+..+.++..+.+++|+|+ +|+++ +.+|+|+|||+.+++++.+++. + ...++++|+|
T Consensus 235 d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~---~---~~~~~~~~~~ 300 (300)
T TIGR03866 235 DAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV---G---RLPWGVVVRP 300 (300)
T ss_pred ECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc---c---cccceeEeCC
Confidence 9999988877766668999999998 77765 5689999999999999999984 2 3568998876
No 103
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.82 E-value=8.5e-19 Score=204.55 Aligned_cols=257 Identities=16% Similarity=0.214 Sum_probs=197.2
Q ss_pred ceEEcccCCCCEEEEEEeCC-EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEE-EEEcC-CCCEEEEEeCCCcEEE
Q 000744 1028 VTELDSSTNGEVLSLIHLKG-RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTC-LYVPS-SGDKLYSGSLDKTIRV 1104 (1306)
Q Consensus 1028 ~~~i~~~H~~~V~sl~fspd-~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~s-l~fsp-dg~~L~Sgs~DgtI~V 1104 (1306)
..+...+|+..|..+++.++ .++++|.||++++|+-..+.+...+.+.+|.+.|.+ +++-+ ++-.+++|+.|++|.+
T Consensus 6 ls~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v 85 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIV 85 (745)
T ss_pred eEEEeccCccchheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEE
Confidence 45677899999999998887 799999999999999988766667788899998887 88876 5557999999999999
Q ss_pred EEcCCCceeEEEe-ecCCCCeEEEEe--CCcEEEEEcCCCeEEEEEecCC-EEEeccCCCeEEEEEeCC-EEEEEECCCc
Q 000744 1105 WSIKPEEIHCLQV-HNVKEAVHELTA--NAEIACFVSPATGVKVYNWSGA-IKHINFNKHVKSLVMTGD-KLYCGCSGYS 1179 (1306)
Q Consensus 1105 Wdi~~~~~~~i~~-~~~~~~V~sl~~--~~~~v~~s~dg~~I~i~~~~~~-~~l~~~~~~V~sl~~s~d-~L~sgs~Dg~ 1179 (1306)
|...+.. ++.. ..|+..|++++. ...+++.+-|.+ .++|....- ..+.+|+..|.++.+-|+ .++|||.|.+
T Consensus 86 ~~~~~~~--P~~~LkgH~snVC~ls~~~~~~~iSgSWD~T-akvW~~~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKt 162 (745)
T KOG0301|consen 86 FKLSQAE--PLYTLKGHKSNVCSLSIGEDGTLISGSWDST-AKVWRIGELVYSLQGHTASVWAVASLPENTYVTGSADKT 162 (745)
T ss_pred EecCCCC--chhhhhccccceeeeecCCcCceEecccccc-eEEecchhhhcccCCcchheeeeeecCCCcEEeccCcce
Confidence 9998873 3333 346799999983 122233333322 444443321 123368999999988765 7999999999
Q ss_pred EEEEECCCCceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEecCCC-EEEEE-EcCc
Q 000744 1180 IQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFTTGID-IQHLA-VNSD 1256 (1306)
Q Consensus 1180 I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~~~~-V~sla-~spd 1256 (1306)
|++|.- ++.+++| .||+ .|+.+++-|+..|+.++ .|| .|+.|++ +|.++..+.+|.. |++++ ..++
T Consensus 163 IklWk~--~~~l~tf------~gHtD~VRgL~vl~~~~flScs-NDg-~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~ 231 (745)
T KOG0301|consen 163 IKLWKG--GTLLKTF------SGHTDCVRGLAVLDDSHFLSCS-NDG-SIRLWDL-DGEVLLEMHGHTNFVYSISMALSD 231 (745)
T ss_pred eeeccC--Cchhhhh------ccchhheeeeEEecCCCeEeec-CCc-eEEEEec-cCceeeeeeccceEEEEEEecCCC
Confidence 999964 6677654 4777 99999999887766544 688 8999998 7888888876554 99998 4444
Q ss_pred -EEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCCCcc
Q 000744 1257 -FIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDGHPY 1305 (1306)
Q Consensus 1257 -~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~~L 1305 (1306)
.++|+++|++++||+.. ++.+.+.- ....||++.+=++|..+
T Consensus 232 ~~Ivs~gEDrtlriW~~~--e~~q~I~l-----PttsiWsa~~L~NgDIv 274 (745)
T KOG0301|consen 232 GLIVSTGEDRTLRIWKKD--ECVQVITL-----PTTSIWSAKVLLNGDIV 274 (745)
T ss_pred CeEEEecCCceEEEeecC--ceEEEEec-----CccceEEEEEeeCCCEE
Confidence 99999999999999987 78888873 22479999988887654
No 104
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=5.2e-18 Score=182.27 Aligned_cols=270 Identities=20% Similarity=0.236 Sum_probs=199.4
Q ss_pred EEEEeCCCcEEEEeCCC------------c--eEEcccCCCCEEEEEEeCCEEEEEECCCcEEEEeCCCCccceEEEEcc
Q 000744 1011 LMNLSSVNATELWHCNE------------V--TELDSSTNGEVLSLIHLKGRVLSSHSDGTIKMWDSGKRVLRLIQEVRE 1076 (1306)
Q Consensus 1011 Lasgs~Dg~I~IWd~~~------------~--~~i~~~H~~~V~sl~fspd~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~ 1076 (1306)
|+.|+....|.=+++.. . .-....|.++|++++.+..+++|||.|-+|+|||+.+. ..+..+-.
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~--~qlg~ll~ 81 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKR--KQLGILLS 81 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEecceeEeccCCCCcEEEEeccch--hhhcceec
Confidence 56677666665555431 1 11235799999999999999999999999999999988 77888889
Q ss_pred cCccEEEEEEcCCCC--EEEEEeCCCcEEEEEcCCCceeEEEeec-CCCCeEEEEe--CCcEEEEEcCCCeEEEEEec-C
Q 000744 1077 HTRAVTCLYVPSSGD--KLYSGSLDKTIRVWSIKPEEIHCLQVHN-VKEAVHELTA--NAEIACFVSPATGVKVYNWS-G 1150 (1306)
Q Consensus 1077 H~~~V~sl~fspdg~--~L~Sgs~DgtI~VWdi~~~~~~~i~~~~-~~~~V~sl~~--~~~~v~~s~dg~~I~i~~~~-~ 1150 (1306)
|.+.|+++.|.++-. .|++|+.||.|.+|+...- .++..+. |.+.|+.++. .+.++....++..++.|+.- |
T Consensus 82 HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W--~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~G 159 (362)
T KOG0294|consen 82 HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW--ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRG 159 (362)
T ss_pred cccceEEEEecCCcchhheeeecCCCcEEEEEcCCe--EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcC
Confidence 999999999998654 8999999999999998774 5555553 6677999997 44454444445557777765 2
Q ss_pred -CEEEeccCCCeEEEEEeC--CEEEEEECCCcEEEEECCCCceeEEecCcccccCCccEEEEEEeCCcEEEEEEecCCCE
Q 000744 1151 -AIKHINFNKHVKSLVMTG--DKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLLFAGGSSVDGTA 1227 (1306)
Q Consensus 1151 -~~~l~~~~~~V~sl~~s~--d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~s~Dg~~ 1227 (1306)
...+.+.....+.+.|+| ++++.++.+ .|-+|.+.+.......... ..+.++.|-+++.+++++ .|+ .
T Consensus 160 r~a~v~~L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~------~r~l~~~~l~~~~L~vG~-d~~-~ 230 (362)
T KOG0294|consen 160 RVAFVLNLKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENP------KRILCATFLDGSELLVGG-DNE-W 230 (362)
T ss_pred ccceeeccCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhcc------ccceeeeecCCceEEEec-CCc-e
Confidence 223344555566688884 577777665 4889988876655432211 157788888888888776 254 8
Q ss_pred EEEEECCCCceEEEEe-cCCCEEEEEEc--Cc--EEEEEECCCcEEEEECCCC-----eEEEEEecccCCCCCCCeEEEE
Q 000744 1228 GKVFSISSKTAVGSFT-TGIDIQHLAVN--SD--FIFTATKCGTIEVWLKERV-----TRVASVKANNSGGGHAKITCLG 1297 (1306)
Q Consensus 1228 I~IWD~~t~~~l~~l~-~~~~V~sla~s--pd--~Lasgs~Dg~I~IWd~~tg-----~~l~~l~~~~~~~~~~~V~sla 1297 (1306)
|++||..+..+...+. |...|-++.+- |+ +|+|+|+||.|+|||++.. +.+..+.. ..+++|+.
T Consensus 231 i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~------~~RltCl~ 304 (362)
T KOG0294|consen 231 ISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT------NVRLTCLR 304 (362)
T ss_pred EEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeec------CCccceee
Confidence 9999999999998888 55679998853 33 9999999999999999875 34555542 34677766
Q ss_pred Ec
Q 000744 1298 TG 1299 (1306)
Q Consensus 1298 fS 1299 (1306)
..
T Consensus 305 ~~ 306 (362)
T KOG0294|consen 305 VK 306 (362)
T ss_pred eh
Confidence 43
No 105
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.81 E-value=5e-19 Score=198.93 Aligned_cols=233 Identities=14% Similarity=0.141 Sum_probs=178.7
Q ss_pred cccccccccc------cEEEEEeCCCcEEEEeCCC----c--------eEEcccCCCCEEEEEEeCC---EEEEEECCCc
Q 000744 999 KYSAVVTDIQ------KALMNLSSVNATELWHCNE----V--------TELDSSTNGEVLSLIHLKG---RVLSSHSDGT 1057 (1306)
Q Consensus 999 ghs~~V~~i~------~~Lasgs~Dg~I~IWd~~~----~--------~~i~~~H~~~V~sl~fspd---~LaSgs~Dg~ 1057 (1306)
-|.+.|+.+. .++|+++..+.|.|||..+ . ...+.+|+..=++++|++. .|++|+.|++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 4667776655 7899999999999999863 1 1256789888888999984 9999999999
Q ss_pred EEEEeCCCCc-----cceEEEEcccCccEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCC
Q 000744 1058 IKMWDSGKRV-----LRLIQEVREHTRAVTCLYVPS-SGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANA 1131 (1306)
Q Consensus 1058 I~vWd~~t~~-----~~~i~~l~~H~~~V~sl~fsp-dg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~ 1131 (1306)
|.+||+.... ..+...+.+|+..|..++|++ +...|.+++.|+.+.|||++++..++....
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~------------- 268 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSV------------- 268 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccc-------------
Confidence 9999996432 245677899999999999999 667899999999999999996321111110
Q ss_pred cEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCC---EEEEEECCCcEEEEECCCCc-eeEEecCcccccCCc-cE
Q 000744 1132 EIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGD---KLYCGCSGYSIQEVDLGNLT-STTFYAGTKKLLGKQ-TI 1206 (1306)
Q Consensus 1132 ~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d---~L~sgs~Dg~I~iwDl~~~~-~~~~~~~~~~l~gh~-~I 1206 (1306)
..|.+.|+|++|+|- .|++||.|++|.+||+++.+ ++. .+.+|. .|
T Consensus 269 -----------------------~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh------~~e~H~dev 319 (422)
T KOG0264|consen 269 -----------------------KAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLH------TFEGHEDEV 319 (422)
T ss_pred -----------------------cccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCce------eccCCCcce
Confidence 125556666666642 58999999999999999854 444 355777 99
Q ss_pred EEEEEeCC-cEEEEEEecCCCEEEEEECCCCc--------------eEEEEec-CCCEEEEEEcCc---EEEEEECCCcE
Q 000744 1207 HSLHMHNG-LLFAGGSSVDGTAGKVFSISSKT--------------AVGSFTT-GIDIQHLAVNSD---FIFTATKCGTI 1267 (1306)
Q Consensus 1207 ~sl~~s~~-~~llas~s~Dg~~I~IWD~~t~~--------------~l~~l~~-~~~V~sla~spd---~Lasgs~Dg~I 1267 (1306)
..|.|+|+ ..++++++.|+ .+.|||+..-. ++..-.+ ...|..+.|+|+ .|++.++|+.+
T Consensus 320 ~~V~WSPh~etvLASSg~D~-rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~L 398 (422)
T KOG0264|consen 320 FQVEWSPHNETVLASSGTDR-RLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNIL 398 (422)
T ss_pred EEEEeCCCCCceeEecccCC-cEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceE
Confidence 99999954 56777777888 79999996521 1222222 345999999998 89999999999
Q ss_pred EEEECCC
Q 000744 1268 EVWLKER 1274 (1306)
Q Consensus 1268 ~IWd~~t 1274 (1306)
+||.+..
T Consensus 399 qIW~~s~ 405 (422)
T KOG0264|consen 399 QIWQMAE 405 (422)
T ss_pred EEeeccc
Confidence 9999863
No 106
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=9.9e-19 Score=205.43 Aligned_cols=230 Identities=19% Similarity=0.189 Sum_probs=180.8
Q ss_pred cccccccc-----cEEEEEeCCCcEEEEeCCCce---EEcccCCCCEEEEEEeCCEEEEEECCCcEEEEeCCCCccceEE
Q 000744 1001 SAVVTDIQ-----KALMNLSSVNATELWHCNEVT---ELDSSTNGEVLSLIHLKGRVLSSHSDGTIKMWDSGKRVLRLIQ 1072 (1306)
Q Consensus 1001 s~~V~~i~-----~~Lasgs~Dg~I~IWd~~~~~---~i~~~H~~~V~sl~fspd~LaSgs~Dg~I~vWd~~t~~~~~i~ 1072 (1306)
.+.|+++. .+|+.|..+|.|.|||..+.. .+..+|...|-+++|+...+.+|+.||.|..+|+.... ....
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~-~~~~ 295 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQ-HVVS 295 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecch-hhhh
Confidence 45555554 899999999999999987533 23334999999999999999999999999999998773 2233
Q ss_pred EEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCE
Q 000744 1073 EVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAI 1152 (1306)
Q Consensus 1073 ~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~ 1152 (1306)
++.+|...|+.+.|++|+.+++||+.|+.+.|||..... ..+.
T Consensus 296 ~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~-p~~~------------------------------------ 338 (484)
T KOG0305|consen 296 TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE-PKFT------------------------------------ 338 (484)
T ss_pred hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc-ccEE------------------------------------
Confidence 488999999999999999999999999999999995431 1111
Q ss_pred EEeccCCCeEEEEEeC---CEEEEEE--CCCcEEEEECCCCceeEEecCcccccCCccEEEEEEeCCc-EEEEEEecCCC
Q 000744 1153 KHINFNKHVKSLVMTG---DKLYCGC--SGYSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGL-LFAGGSSVDGT 1226 (1306)
Q Consensus 1153 ~l~~~~~~V~sl~~s~---d~L~sgs--~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~-~llas~s~Dg~ 1226 (1306)
++.|...|..++|+| +.|++|+ .|++|++||..++..+.... ....|.++.|++.. .++++.+.-.+
T Consensus 339 -~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd------tgsQVcsL~Wsk~~kEi~sthG~s~n 411 (484)
T KOG0305|consen 339 -FTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD------TGSQVCSLIWSKKYKELLSTHGYSEN 411 (484)
T ss_pred -EeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc------cCCceeeEEEcCCCCEEEEecCCCCC
Confidence 223555566666664 3577765 59999999999999887432 22289999999554 44444333333
Q ss_pred EEEEEECCCCceEEEEecC-CCEEEEEEcCc--EEEEEECCCcEEEEECCCC
Q 000744 1227 AGKVFSISSKTAVGSFTTG-IDIQHLAVNSD--FIFTATKCGTIEVWLKERV 1275 (1306)
Q Consensus 1227 ~I~IWD~~t~~~l~~l~~~-~~V~sla~spd--~Lasgs~Dg~I~IWd~~tg 1275 (1306)
.|.||+..+.+.+..+.+| ..|..++++|| .+++|+.|.++++|++-..
T Consensus 412 ~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 412 QITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred cEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 8999999999999999854 56999999999 9999999999999998764
No 107
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.81 E-value=3.7e-19 Score=196.77 Aligned_cols=235 Identities=18% Similarity=0.249 Sum_probs=188.2
Q ss_pred cccccccccccccccc-----cEEEEEeCCCcEEEEeCCC--ceEEcccCCCCEEEEEEeCC--EEEEEECCCcEEEEeC
Q 000744 993 TLRKLKKYSAVVTDIQ-----KALMNLSSVNATELWHCNE--VTELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDS 1063 (1306)
Q Consensus 993 ~l~~l~ghs~~V~~i~-----~~Lasgs~Dg~I~IWd~~~--~~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~ 1063 (1306)
...+|.|.-+.++.+. +.+++++.|+.+++|++.. ....+.+|++.|+++.|... .+++|+.|.+|+.||+
T Consensus 211 ~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl 290 (459)
T KOG0288|consen 211 LISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDL 290 (459)
T ss_pred hhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhh
Confidence 3455666666666655 7788899999999999985 56677899999999999864 5999999999999999
Q ss_pred CCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeE
Q 000744 1064 GKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGV 1143 (1306)
Q Consensus 1064 ~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I 1143 (1306)
... .|..++.. ...+..|..+ +..++||-.|++|+.||+++. .+....+..+.|+++. .+.+|.
T Consensus 291 ~k~--~C~kt~l~-~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~--~~~~sv~~gg~vtSl~-------ls~~g~-- 354 (459)
T KOG0288|consen 291 QKA--YCSKTVLP-GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSA--DKTRSVPLGGRVTSLD-------LSMDGL-- 354 (459)
T ss_pred hhh--heeccccc-cccccceEec--ceeeeecccccceEEEeccCC--ceeeEeecCcceeeEe-------eccCCe--
Confidence 987 77777642 3345566654 567999999999999999987 3333333335666665 555554
Q ss_pred EEEEecCCEEEeccCCCeEEEEEeCCEEEEEECCCcEEEEECCCCceeEEecCcccccCCccEEEEEEeCCcEEEEEEec
Q 000744 1144 KVYNWSGAIKHINFNKHVKSLVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLLFAGGSSV 1223 (1306)
Q Consensus 1144 ~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~s~ 1223 (1306)
.+++.+.|.++.++|+++......|.......++ ..+.+.|+|++.|++.||.
T Consensus 355 --------------------------~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~as-DwtrvvfSpd~~YvaAGS~ 407 (459)
T KOG0288|consen 355 --------------------------ELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCAS-DWTRVVFSPDGSYVAAGSA 407 (459)
T ss_pred --------------------------EEeeecCCCceeeeecccccEEEEeecccccccc-ccceeEECCCCceeeeccC
Confidence 6888899999999999999988888754433333 5788999999999999999
Q ss_pred CCCEEEEEECCCCceEEEEec-CC--CEEEEEEcCc--EEEEEECCCcEEEEE
Q 000744 1224 DGTAGKVFSISSKTAVGSFTT-GI--DIQHLAVNSD--FIFTATKCGTIEVWL 1271 (1306)
Q Consensus 1224 Dg~~I~IWD~~t~~~l~~l~~-~~--~V~sla~spd--~Lasgs~Dg~I~IWd 1271 (1306)
|| .|+||++.++++...+.. +. .|++++|+|. .+++++.++.+.+|.
T Consensus 408 dg-sv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 408 DG-SVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred CC-cEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 99 899999999999998873 33 5999999997 999999999999993
No 108
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=2.1e-19 Score=186.70 Aligned_cols=233 Identities=16% Similarity=0.177 Sum_probs=171.2
Q ss_pred eEEcccCCCCEEEE--EEeCCEEEEEECCCcEEEEeCCCCcc-ceEEEEcccCccEEEEEEcC--CCCEEEEEeCCCcEE
Q 000744 1029 TELDSSTNGEVLSL--IHLKGRVLSSHSDGTIKMWDSGKRVL-RLIQEVREHTRAVTCLYVPS--SGDKLYSGSLDKTIR 1103 (1306)
Q Consensus 1029 ~~i~~~H~~~V~sl--~fspd~LaSgs~Dg~I~vWd~~t~~~-~~i~~l~~H~~~V~sl~fsp--dg~~L~Sgs~DgtI~ 1103 (1306)
+.+...|+..|.++ .|....|+|++.|++|+|+.+.++.. +++.++.||.++|+.++|-. -|.+|+|++.||.|.
T Consensus 4 q~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI 83 (299)
T KOG1332|consen 4 QTIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI 83 (299)
T ss_pred eehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE
Confidence 45667888888875 45667999999999999999986543 67889999999999999965 799999999999999
Q ss_pred EEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCC----EEEEEECCCc
Q 000744 1104 VWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGD----KLYCGCSGYS 1179 (1306)
Q Consensus 1104 VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d----~L~sgs~Dg~ 1179 (1306)
||.-.++.......+. .|...|++++|.|. .|++++.||.
T Consensus 84 iWke~~g~w~k~~e~~------------------------------------~h~~SVNsV~wapheygl~LacasSDG~ 127 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHA------------------------------------AHSASVNSVAWAPHEYGLLLACASSDGK 127 (299)
T ss_pred EEecCCCchhhhhhhh------------------------------------hhcccceeecccccccceEEEEeeCCCc
Confidence 9998887422222221 14444555555543 4899999999
Q ss_pred EEEEECCCC-ceeEEecCcccccCCc-cEEEEEEeCC---c-----------EEEEEEecCCCEEEEEECCCCc--eEEE
Q 000744 1180 IQEVDLGNL-TSTTFYAGTKKLLGKQ-TIHSLHMHNG---L-----------LFAGGSSVDGTAGKVFSISSKT--AVGS 1241 (1306)
Q Consensus 1180 I~iwDl~~~-~~~~~~~~~~~l~gh~-~I~sl~~s~~---~-----------~llas~s~Dg~~I~IWD~~t~~--~l~~ 1241 (1306)
|.+.+.++. .-.. .+....|. .|++++|.|. + .-+++|+.|+ .|+||+..+++ .-.+
T Consensus 128 vsvl~~~~~g~w~t----~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn-~VkiW~~~~~~w~~e~~ 202 (299)
T KOG1332|consen 128 VSVLTYDSSGGWTT----SKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDN-LVKIWKFDSDSWKLERT 202 (299)
T ss_pred EEEEEEcCCCCccc----hhhhhccccccceeeecCcCCCccccccCcccccceeeccCCcc-ceeeeecCCcchhhhhh
Confidence 999998764 1111 11244677 8999999754 2 2245556788 89999998763 3344
Q ss_pred Eec-CCCEEEEEEcCc------EEEEEECCCcEEEEECCCC--eEEEEEecccCCCCCCCeEEEEEcCCCCccC
Q 000744 1242 FTT-GIDIQHLAVNSD------FIFTATKCGTIEVWLKERV--TRVASVKANNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1242 l~~-~~~V~sla~spd------~Lasgs~Dg~I~IWd~~tg--~~l~~l~~~~~~~~~~~V~slafSpdg~~La 1306 (1306)
+.+ ...|..++|.|. +|+++|.||++.||..+.. .-..++. ....+.++.+.||+.|..|+
T Consensus 203 l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll----~~f~~~~w~vSWS~sGn~La 272 (299)
T KOG1332|consen 203 LEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLL----EEFPDVVWRVSWSLSGNILA 272 (299)
T ss_pred hhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccccccc----ccCCcceEEEEEeccccEEE
Confidence 664 456999999986 8999999999999987621 1222222 11235899999999998875
No 109
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.80 E-value=1.8e-18 Score=201.61 Aligned_cols=302 Identities=15% Similarity=0.165 Sum_probs=221.5
Q ss_pred hhhccccccccccccccccc--------cEEEEEeCCCcEEEEeCCC---------------------------ce----
Q 000744 989 CIYGTLRKLKKYSAVVTDIQ--------KALMNLSSVNATELWHCNE---------------------------VT---- 1029 (1306)
Q Consensus 989 ~~~~~l~~l~ghs~~V~~i~--------~~Lasgs~Dg~I~IWd~~~---------------------------~~---- 1029 (1306)
+-...+..+.||.+.|.++. -+|||||.|..||||.+.- ..
T Consensus 179 d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is 258 (764)
T KOG1063|consen 179 DSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRIS 258 (764)
T ss_pred cceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEe
Confidence 34567889999999998876 5799999999999998630 00
Q ss_pred --EEcccCCCCEEEEEEeCC--EEEEEECCCcEEEEeCCCC--cc-----------------------------------
Q 000744 1030 --ELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDSGKR--VL----------------------------------- 1068 (1306)
Q Consensus 1030 --~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t~--~~----------------------------------- 1068 (1306)
.+..||.+.|.++.|+|. .|+|+|.|.++.+|...+. .+
T Consensus 259 ~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~G 338 (764)
T KOG1063|consen 259 FEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTG 338 (764)
T ss_pred hhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccC
Confidence 123599999999999996 7999999999999987543 11
Q ss_pred -------------ceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc--eeEEEee-cCCCCeEEEEe-C-
Q 000744 1069 -------------RLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEE--IHCLQVH-NVKEAVHELTA-N- 1130 (1306)
Q Consensus 1069 -------------~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~--~~~i~~~-~~~~~V~sl~~-~- 1130 (1306)
.....+.||.+.|+.++|+|.|.+++|.|.|.|-|++-.-..+ ...+... -|...++|++| +
T Consensus 339 g~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~ 418 (764)
T KOG1063|consen 339 GFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE 418 (764)
T ss_pred cEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC
Confidence 0111235899999999999999999999999999998765332 2222111 26677888887 4
Q ss_pred CcEEEEEcCCCeEEEEEec--------------------------------------------C----------------
Q 000744 1131 AEIACFVSPATGVKVYNWS--------------------------------------------G---------------- 1150 (1306)
Q Consensus 1131 ~~~v~~s~dg~~I~i~~~~--------------------------------------------~---------------- 1150 (1306)
+..+..+.|.+.++++... |
T Consensus 419 ~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~ 498 (764)
T KOG1063|consen 419 DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPC 498 (764)
T ss_pred CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCch
Confidence 3333344444545544311 0
Q ss_pred -------------------CEEEeccCCCeEEEEEeCC--EEEEEECC-----CcEEEEECCCCceeEEecCcccccCCc
Q 000744 1151 -------------------AIKHINFNKHVKSLVMTGD--KLYCGCSG-----YSIQEVDLGNLTSTTFYAGTKKLLGKQ 1204 (1306)
Q Consensus 1151 -------------------~~~l~~~~~~V~sl~~s~d--~L~sgs~D-----g~I~iwDl~~~~~~~~~~~~~~l~gh~ 1204 (1306)
..++++|...|.+++.+|+ .+++++.. ..|++|+..+...++ .+.+|+
T Consensus 499 ~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~------~L~~Hs 572 (764)
T KOG1063|consen 499 ELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQ------ELEGHS 572 (764)
T ss_pred hccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhh------eecccc
Confidence 0123357788999999954 68887764 358999998877665 366889
Q ss_pred -cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCce----EEEEecCCC-EEEEEEcCc--EEEEEECCCcEEEEECCCC-
Q 000744 1205 -TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTA----VGSFTTGID-IQHLAVNSD--FIFTATKCGTIEVWLKERV- 1275 (1306)
Q Consensus 1205 -~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~----l~~l~~~~~-V~sla~spd--~Lasgs~Dg~I~IWd~~tg- 1275 (1306)
.|+.+.|+|++.|+.+.|.|. ++.+|....... ....+.|.. |++..|+|+ +++|+|.|.+|+||.....
T Consensus 573 LTVT~l~FSpdg~~LLsvsRDR-t~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~ 651 (764)
T KOG1063|consen 573 LTVTRLAFSPDGRYLLSVSRDR-TVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLR 651 (764)
T ss_pred eEEEEEEECCCCcEEEEeecCc-eEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCch
Confidence 999999999999999999998 899998754321 112334444 899999999 8999999999999999887
Q ss_pred -eEEEEEecccCCCCCCCeEEEEEcC
Q 000744 1276 -TRVASVKANNSGGGHAKITCLGTGV 1300 (1306)
Q Consensus 1276 -~~l~~l~~~~~~~~~~~V~slafSp 1300 (1306)
+.+..+.. ..+...|+.++|.|
T Consensus 652 d~~i~~~a~---~~~~~aVTAv~~~~ 674 (764)
T KOG1063|consen 652 DKYISRFAC---LKFSLAVTAVAYLP 674 (764)
T ss_pred hhhhhhhch---hccCCceeeEEeec
Confidence 55555332 33557899998876
No 110
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=5.9e-20 Score=214.57 Aligned_cols=239 Identities=17% Similarity=0.270 Sum_probs=195.1
Q ss_pred EEEEeCCCcEEEEeCCCceEEcccCCCCEEEEEEeC--CEEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcC
Q 000744 1011 LMNLSSVNATELWHCNEVTELDSSTNGEVLSLIHLK--GRVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPS 1088 (1306)
Q Consensus 1011 Lasgs~Dg~I~IWd~~~~~~i~~~H~~~V~sl~fsp--d~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fsp 1088 (1306)
++.+..+-.+++||.+.. ..|...|.|+..-. ..+++|+.|..+-+|.+... .++..+.+|..+|.++.|++
T Consensus 7 ~m~~~~~t~Lr~~~~~~~----~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp--~~i~S~~~hespIeSl~f~~ 80 (825)
T KOG0267|consen 7 LMKTKRATKLRVWDTREF----VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP--NAITSLTGHESPIESLTFDT 80 (825)
T ss_pred cceeeeeeccccccchhh----hhhhhhhceeeeeccceeeccCCCceeeccccccCC--chhheeeccCCcceeeecCc
Confidence 445555667788886543 46777788877633 48999999999999999877 77888999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeC
Q 000744 1089 SGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTG 1168 (1306)
Q Consensus 1089 dg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~ 1168 (1306)
+..+|+.|+.||+||+||+...+ .++.+ .+|...+.++.|+|
T Consensus 81 ~E~LlaagsasgtiK~wDleeAk--~vrtL------------------------------------tgh~~~~~sv~f~P 122 (825)
T KOG0267|consen 81 SERLLAAGSASGTIKVWDLEEAK--IVRTL------------------------------------TGHLLNITSVDFHP 122 (825)
T ss_pred chhhhcccccCCceeeeehhhhh--hhhhh------------------------------------hccccCcceeeecc
Confidence 99999999999999999999763 22221 12334444445554
Q ss_pred C--EEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEe-c
Q 000744 1169 D--KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFT-T 1244 (1306)
Q Consensus 1169 d--~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~-~ 1244 (1306)
- +.+.|+.|+.+++||++...+.+.|. +|. .|..+.|+|++.++++++.|. +++|||...|+....|. |
T Consensus 123 ~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~------s~~~vv~~l~lsP~Gr~v~~g~ed~-tvki~d~~agk~~~ef~~~ 195 (825)
T KOG0267|consen 123 YGEFFASGSTDTDLKIWDIRKKGCSHTYK------SHTRVVDVLRLSPDGRWVASGGEDN-TVKIWDLTAGKLSKEFKSH 195 (825)
T ss_pred ceEEeccccccccceehhhhccCceeeec------CCcceeEEEeecCCCceeeccCCcc-eeeeecccccccccccccc
Confidence 3 67889999999999999888888765 455 789999999999999998777 99999999999999999 6
Q ss_pred CCCEEEEEEcCc--EEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCCCcc
Q 000744 1245 GIDIQHLAVNSD--FIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDGHPY 1305 (1306)
Q Consensus 1245 ~~~V~sla~spd--~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~~L 1305 (1306)
...|.++.|+|. .+++||.|++|++||+++.+.+..... ....|.+.+|+|||+.+
T Consensus 196 e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~-----~~~~v~~~~fn~~~~~~ 253 (825)
T KOG0267|consen 196 EGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKP-----ETDGVRSLAFNPDGKIV 253 (825)
T ss_pred cccccccccCchhhhhccCCCCceeeeeccceeEEeeccCC-----ccCCceeeeecCCceee
Confidence 678999999998 899999999999999999887776653 34789999999999864
No 111
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.80 E-value=3.7e-17 Score=194.25 Aligned_cols=293 Identities=15% Similarity=0.169 Sum_probs=214.5
Q ss_pred cEEEEEeCCCcEEEEeCCCc--eEEcccCCCCEEEEEEeC--CEEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEE
Q 000744 1009 KALMNLSSVNATELWHCNEV--TELDSSTNGEVLSLIHLK--GRVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCL 1084 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~--~~i~~~H~~~V~sl~fsp--d~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl 1084 (1306)
+-++.|+.+|.+++||+++. .....++...|+++.-+| |.++.|..+|+|.++|++.+ +.+.+|+...+.|+++
T Consensus 173 NKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~d--kil~sFk~d~g~Vtsl 250 (910)
T KOG1539|consen 173 NKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFD--KILMSFKQDWGRVTSL 250 (910)
T ss_pred eeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccC--cEEEEEEccccceeEE
Confidence 66889999999999999864 455677889999999999 79999999999999999999 8999997556999999
Q ss_pred EEcCCCC-EEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEe--C-CcEEEEEcCCCeEEEEEec---CCEEE---
Q 000744 1085 YVPSSGD-KLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTA--N-AEIACFVSPATGVKVYNWS---GAIKH--- 1154 (1306)
Q Consensus 1085 ~fspdg~-~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~--~-~~~v~~s~dg~~I~i~~~~---~~~~l--- 1154 (1306)
+|..||+ .+++|+..|.+.+||++..+...+....|.+.|....| + +-++..++| +.+++|-+| |..++
T Consensus 251 SFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~D-nSlk~~vfD~~dg~pR~LR~ 329 (910)
T KOG1539|consen 251 SFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGAD-NSLKVWVFDSGDGVPRLLRS 329 (910)
T ss_pred EeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCC-CceeEEEeeCCCCcchheee
Confidence 9999986 56677777999999999875444433346678888887 3 334444555 558888777 22222
Q ss_pred -eccCCCeEEEEEeCC---EEEEEECCCcEEEEE----------------------------------------------
Q 000744 1155 -INFNKHVKSLVMTGD---KLYCGCSGYSIQEVD---------------------------------------------- 1184 (1306)
Q Consensus 1155 -~~~~~~V~sl~~s~d---~L~sgs~Dg~I~iwD---------------------------------------------- 1184 (1306)
-+|..+..|+.|.+. ++.+.+.|++.+.++
T Consensus 330 R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~ 409 (910)
T KOG1539|consen 330 RGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREK 409 (910)
T ss_pred ccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhh
Confidence 245666666665522 355555555555554
Q ss_pred -------------------CCCCce-eEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEE-
Q 000744 1185 -------------------LGNLTS-TTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSF- 1242 (1306)
Q Consensus 1185 -------------------l~~~~~-~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l- 1242 (1306)
.++... ..++.. ..++... .+++++.+..|.|+..|...| +|-+|++++|-...+|
T Consensus 410 ~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~-~~~~~~~~~~~av~vs~CGNF~~IG~S~G-~Id~fNmQSGi~r~sf~ 487 (910)
T KOG1539|consen 410 EWDNVITAHKGKRSAYTWNFRNKTSGRHVLDP-KRFKKDDINATAVCVSFCGNFVFIGYSKG-TIDRFNMQSGIHRKSFG 487 (910)
T ss_pred hhcceeEEecCcceEEEEeccCcccccEEecC-ccccccCcceEEEEEeccCceEEEeccCC-eEEEEEcccCeeecccc
Confidence 333222 111111 1112223 788899998888887776566 8999999999999988
Q ss_pred ---ecCCCEEEEEEcCc--EEEEEECCCcEEEEECCCCeEEEEEeccc--------------------------------
Q 000744 1243 ---TTGIDIQHLAVNSD--FIFTATKCGTIEVWLKERVTRVASVKANN-------------------------------- 1285 (1306)
Q Consensus 1243 ---~~~~~V~sla~spd--~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~-------------------------------- 1285 (1306)
.|...|++++.+.- .+++++.||.+++||..++..+..+....
T Consensus 488 ~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~k 567 (910)
T KOG1539|consen 488 DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRK 567 (910)
T ss_pred cCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhh
Confidence 36778999999875 89999999999999998776444432100
Q ss_pred ----CCCCCCCeEEEEEcCCCCccC
Q 000744 1286 ----SGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1286 ----~~~~~~~V~slafSpdg~~La 1306 (1306)
.-+|.+.|++++|||||+||+
T Consensus 568 vvR~f~gh~nritd~~FS~DgrWli 592 (910)
T KOG1539|consen 568 VVREFWGHGNRITDMTFSPDGRWLI 592 (910)
T ss_pred hhHHhhccccceeeeEeCCCCcEEE
Confidence 123679999999999999985
No 112
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.80 E-value=4.5e-17 Score=183.70 Aligned_cols=280 Identities=13% Similarity=0.156 Sum_probs=211.4
Q ss_pred cEEEEEeCCCcEEEEeCCCc-----eEEcccC-CCCEEEEEEeCC-EEEEEECCCcEEEEeCCCCccceEEEEcccCccE
Q 000744 1009 KALMNLSSVNATELWHCNEV-----TELDSST-NGEVLSLIHLKG-RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAV 1081 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~-----~~i~~~H-~~~V~sl~fspd-~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V 1081 (1306)
.++++++. |.+..|+.++. +.+...+ +..|.|++|.++ .++||..+|+|.||+..+. +..+....|.+.|
T Consensus 214 nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~--~~~k~~~aH~ggv 290 (626)
T KOG2106|consen 214 NLIITCGK-GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTN--RISKQVHAHDGGV 290 (626)
T ss_pred cEEEEeCC-ceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCc--eEEeEeeecCCce
Confidence 67888877 99999998752 2222222 577999999986 9999999999999999877 5666666999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCC--EEEeccCC
Q 000744 1082 TCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGA--IKHINFNK 1159 (1306)
Q Consensus 1082 ~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~--~~l~~~~~ 1159 (1306)
.+++.-.+|. |+||+.|+.|..||-.-.+.+.+...+..++|..+.-+..-+.+....+.|.-.+.++. ....+|..
T Consensus 291 ~~L~~lr~Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~d 369 (626)
T KOG2106|consen 291 FSLCMLRDGT-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGD 369 (626)
T ss_pred EEEEEecCcc-EeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEeccc
Confidence 9999999985 55599999999999444434555555566788888762222445555555766776643 45568888
Q ss_pred CeEEEEEeCC--EEEEEECCCcEEEEECCCCceeEEecCcccccCCccEEEEEEeCCcEEEEEEecCCCEEEEEECCCCc
Q 000744 1160 HVKSLVMTGD--KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKT 1237 (1306)
Q Consensus 1160 ~V~sl~~s~d--~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~ 1237 (1306)
....++.+|+ .+++++.|+.+++|+ ..+...+.. -..+..++.|+|.+ .++.|...| ...+.|.++..
T Consensus 370 elwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~------~~d~~~~~~fhpsg-~va~Gt~~G-~w~V~d~e~~~ 439 (626)
T KOG2106|consen 370 ELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI------IEDPAECADFHPSG-VVAVGTATG-RWFVLDTETQD 439 (626)
T ss_pred ceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE------ecCceeEeeccCcc-eEEEeeccc-eEEEEecccce
Confidence 9999999876 699999999999999 444433211 11188999999999 444555677 79999999976
Q ss_pred eEEEEecCCCEEEEEEcCc--EEEEEECCCcEEEEECCCCe-EEEEEecccCCCCCCCeEEEEEcCCCCccC
Q 000744 1238 AVGSFTTGIDIQHLAVNSD--FIFTATKCGTIEVWLKERVT-RVASVKANNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1238 ~l~~l~~~~~V~sla~spd--~Lasgs~Dg~I~IWd~~tg~-~l~~l~~~~~~~~~~~V~slafSpdg~~La 1306 (1306)
.+..-..+.+++.+.|+|+ +++.|+.|+.|+||.+.... ...... ..+..+|+.+.||+|+++|+
T Consensus 440 lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~----k~~gs~ithLDwS~Ds~~~~ 507 (626)
T KOG2106|consen 440 LVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVG----KCSGSPITHLDWSSDSQFLV 507 (626)
T ss_pred eEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEee----eecCceeEEeeecCCCceEE
Confidence 6665556778999999999 99999999999999987543 333332 12227999999999999874
No 113
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=4.2e-19 Score=205.48 Aligned_cols=212 Identities=19% Similarity=0.279 Sum_probs=171.8
Q ss_pred EEEEEECCCcEEEEeCCCCcc----ceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCC
Q 000744 1048 RVLSSHSDGTIKMWDSGKRVL----RLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEA 1123 (1306)
Q Consensus 1048 ~LaSgs~Dg~I~vWd~~t~~~----~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~ 1123 (1306)
+|+|||.||.|++|++..... .++..++.|.+.|+.+....+|+.|+|+|.|-+|++|+...+...|...+.
T Consensus 39 yLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir---- 114 (735)
T KOG0308|consen 39 YLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR---- 114 (735)
T ss_pred eEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh----
Confidence 799999999999999864321 257788999999999999999999999999999999998875212222221
Q ss_pred eEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEE-eCC--EEEEEECCCcEEEEECCCCc--eeEEecCc-
Q 000744 1124 VHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVM-TGD--KLYCGCSGYSIQEVDLGNLT--STTFYAGT- 1197 (1306)
Q Consensus 1124 V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~-s~d--~L~sgs~Dg~I~iwDl~~~~--~~~~~~~~- 1197 (1306)
.|.++|.|+++ .++ .+++|+.|+.|.+||++++. .+..|...
T Consensus 115 --------------------------------~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t 162 (735)
T KOG0308|consen 115 --------------------------------THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVT 162 (735)
T ss_pred --------------------------------cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccc
Confidence 25566666666 222 68999999999999999873 33333211
Q ss_pred -cccc-CCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEecC-CCEEEEEEcCc--EEEEEECCCcEEEEE
Q 000744 1198 -KKLL-GKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFTTG-IDIQHLAVNSD--FIFTATKCGTIEVWL 1271 (1306)
Q Consensus 1198 -~~l~-gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~~-~~V~sla~spd--~Lasgs~Dg~I~IWd 1271 (1306)
..+. |+. +|++++.++.+.++++|+.++ .+++||.++++.+..+.+| ..|..+-.++| .++++|+||+|++||
T Consensus 163 ~~sl~sG~k~siYSLA~N~t~t~ivsGgtek-~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWd 241 (735)
T KOG0308|consen 163 VNSLGSGPKDSIYSLAMNQTGTIIVSGGTEK-DLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWD 241 (735)
T ss_pred cccCCCCCccceeeeecCCcceEEEecCccc-ceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeee
Confidence 1233 666 999999999999999998887 8999999999999999865 56999999998 999999999999999
Q ss_pred CCCCeEEEEEecccCCCCCCCeEEEEEcCC
Q 000744 1272 KERVTRVASVKANNSGGGHAKITCLGTGVD 1301 (1306)
Q Consensus 1272 ~~tg~~l~~l~~~~~~~~~~~V~slafSpd 1301 (1306)
+....|+.++.. |...||++..+|+
T Consensus 242 LgqQrCl~T~~v-----H~e~VWaL~~~~s 266 (735)
T KOG0308|consen 242 LGQQRCLATYIV-----HKEGVWALQSSPS 266 (735)
T ss_pred ccccceeeeEEe-----ccCceEEEeeCCC
Confidence 999999999986 7778999998876
No 114
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.80 E-value=1.8e-18 Score=212.12 Aligned_cols=246 Identities=16% Similarity=0.209 Sum_probs=191.7
Q ss_pred hhccccccccccccccccc-----cEEEEEeCCCcEEEEeCCC--------------------ceEEcccCCCCEEEEEE
Q 000744 990 IYGTLRKLKKYSAVVTDIQ-----KALMNLSSVNATELWHCNE--------------------VTELDSSTNGEVLSLIH 1044 (1306)
Q Consensus 990 ~~~~l~~l~ghs~~V~~i~-----~~Lasgs~Dg~I~IWd~~~--------------------~~~i~~~H~~~V~sl~f 1044 (1306)
+-+.+.++..|.+.|+|+. ++||+||+|+.|.||+..+ ...++.+|.+.|..+.|
T Consensus 58 l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~W 137 (942)
T KOG0973|consen 58 LPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNW 137 (942)
T ss_pred cchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceecc
Confidence 4466788889999999985 9999999999999998762 33456789999999999
Q ss_pred eCC--EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc-eeEEEee-c-
Q 000744 1045 LKG--RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEE-IHCLQVH-N- 1119 (1306)
Q Consensus 1045 spd--~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~-~~~i~~~-~- 1119 (1306)
+|+ +|++++.|++|.|||..+. +.+.++++|.+.|-.+.|.|-|++|+|-+.|++|+||++.+-. .+.+... .
T Consensus 138 sp~~~~lvS~s~DnsViiwn~~tF--~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~ 215 (942)
T KOG0973|consen 138 SPDDSLLVSVSLDNSVIIWNAKTF--ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEE 215 (942)
T ss_pred CCCccEEEEecccceEEEEccccc--eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhh
Confidence 996 9999999999999999998 8999999999999999999999999999999999999976632 1111111 1
Q ss_pred --CCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCCEEEEEECCCcEEEEECCCCceeEEecCc
Q 000744 1120 --VKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGT 1197 (1306)
Q Consensus 1120 --~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~ 1197 (1306)
....+.-+ .|+|||.++.... +.-+.-.++.|.+-.+.+.-.
T Consensus 216 ~~~~T~f~Rl-------SWSPDG~~las~n------------------------A~n~~~~~~~IieR~tWk~~~----- 259 (942)
T KOG0973|consen 216 SPLTTFFLRL-------SWSPDGHHLASPN------------------------AVNGGKSTIAIIERGTWKVDK----- 259 (942)
T ss_pred CCCcceeeec-------ccCCCcCeecchh------------------------hccCCcceeEEEecCCceeee-----
Confidence 11122233 3777776332211 111223457777776666555
Q ss_pred ccccCCc-cEEEEEEeC------Cc-----------EEEEEEecCCCEEEEEECCCCceEEEEec--CCCEEEEEEcCc-
Q 000744 1198 KKLLGKQ-TIHSLHMHN------GL-----------LFAGGSSVDGTAGKVFSISSKTAVGSFTT--GIDIQHLAVNSD- 1256 (1306)
Q Consensus 1198 ~~l~gh~-~I~sl~~s~------~~-----------~llas~s~Dg~~I~IWD~~t~~~l~~l~~--~~~V~sla~spd- 1256 (1306)
.+-||. ++.++.|+| .. .++++|+.|+ +|-||.....+++..+.+ ...|..++|+||
T Consensus 260 -~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDr-SlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG 337 (942)
T KOG0973|consen 260 -DLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDR-SLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDG 337 (942)
T ss_pred -eeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCc-cEEEEecCCCCchhhhhhhhcCceeeeeEcCCC
Confidence 355777 999999974 11 2788899998 899999988888777764 667999999999
Q ss_pred -EEEEEECCCcEEEEECCCC
Q 000744 1257 -FIFTATKCGTIEVWLKERV 1275 (1306)
Q Consensus 1257 -~Lasgs~Dg~I~IWd~~tg 1275 (1306)
.|+.+|.||+|.+..++..
T Consensus 338 ~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 338 FSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred CeEEEEecCCeEEEEEcchH
Confidence 8999999999999998764
No 115
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.79 E-value=8.2e-19 Score=198.02 Aligned_cols=230 Identities=17% Similarity=0.201 Sum_probs=170.7
Q ss_pred EEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc--eeEEEeec--CCCCeEEEEe--CCcEEEEEcCCCeEEE
Q 000744 1072 QEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEE--IHCLQVHN--VKEAVHELTA--NAEIACFVSPATGVKV 1145 (1306)
Q Consensus 1072 ~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~--~~~i~~~~--~~~~V~sl~~--~~~~v~~s~dg~~I~i 1145 (1306)
..+++|+..|.++++.|.|-.|+|||.|.+|++||+..-. .+.++.+. ....|.++.| .+..+.+.......++
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl 240 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL 240 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence 4577899999999999999999999999999999998653 22333332 3467888887 3333333333344777
Q ss_pred EEecCCEEE---------------eccCCCeEEEEEeCC---EEEEEECCCcEEEEECCCCc-eeEEecCcccccCCc-c
Q 000744 1146 YNWSGAIKH---------------INFNKHVKSLVMTGD---KLYCGCSGYSIQEVDLGNLT-STTFYAGTKKLLGKQ-T 1205 (1306)
Q Consensus 1146 ~~~~~~~~l---------------~~~~~~V~sl~~s~d---~L~sgs~Dg~I~iwDl~~~~-~~~~~~~~~~l~gh~-~ 1205 (1306)
++.+|.... .+|...++|.+|+|. .+++++.||++++||+.+.+ ..++|.. +...+.. +
T Consensus 241 ~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~-k~~~g~Rv~ 319 (641)
T KOG0772|consen 241 LDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKT-KPAGGKRVP 319 (641)
T ss_pred EccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEee-ccCCCcccC
Confidence 777765332 247788999999986 59999999999999998743 4444442 2233445 9
Q ss_pred EEEEEEeCCcEEEEEEecCCCEEEEEECCCCc--eEEEEe--c--CCCEEEEEEcCc--EEEEEECCCcEEEEECCCC-e
Q 000744 1206 IHSLHMHNGLLFAGGSSVDGTAGKVFSISSKT--AVGSFT--T--GIDIQHLAVNSD--FIFTATKCGTIEVWLKERV-T 1276 (1306)
Q Consensus 1206 I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~--~l~~l~--~--~~~V~sla~spd--~Lasgs~Dg~I~IWd~~tg-~ 1276 (1306)
++++.|++++.++++++.|| +|.+||..+.. ....+. | +..|+||.|++| +|++-|.|+++++||++.. +
T Consensus 320 ~tsC~~nrdg~~iAagc~DG-SIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kk 398 (641)
T KOG0772|consen 320 VTSCAWNRDGKLIAAGCLDG-SIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKK 398 (641)
T ss_pred ceeeecCCCcchhhhcccCC-ceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccccc
Confidence 99999999988899988888 89999985532 222232 3 346999999998 9999999999999999864 5
Q ss_pred EEEEEecccCCCCCCCeEEEEEcCCCCccC
Q 000744 1277 RVASVKANNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1277 ~l~~l~~~~~~~~~~~V~slafSpdg~~La 1306 (1306)
++.+..+ .....+-+.++||||.++|+
T Consensus 399 pL~~~tg---L~t~~~~tdc~FSPd~kli~ 425 (641)
T KOG0772|consen 399 PLNVRTG---LPTPFPGTDCCFSPDDKLIL 425 (641)
T ss_pred chhhhcC---CCccCCCCccccCCCceEEE
Confidence 6666654 22224668999999998763
No 116
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=1.4e-18 Score=194.23 Aligned_cols=224 Identities=17% Similarity=0.199 Sum_probs=171.5
Q ss_pred cEEEEEeCCCcEEEEeCCC------ce-----------------EEcccCCCCEEEEEEeC---CEEEEEECCCcEEEEe
Q 000744 1009 KALMNLSSVNATELWHCNE------VT-----------------ELDSSTNGEVLSLIHLK---GRVLSSHSDGTIKMWD 1062 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~------~~-----------------~i~~~H~~~V~sl~fsp---d~LaSgs~Dg~I~vWd 1062 (1306)
+|+|.|+.|..|.|||+.= .. ....+|+..|.+++|+. +.|+|||.|.+|++||
T Consensus 193 NyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD 272 (463)
T KOG0270|consen 193 NYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWD 272 (463)
T ss_pred ceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEE
Confidence 7999999999999999851 00 11236899999999997 4999999999999999
Q ss_pred CCCCccceEEEEcccCccEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCC
Q 000744 1063 SGKRVLRLIQEVREHTRAVTCLYVPS-SGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPAT 1141 (1306)
Q Consensus 1063 ~~t~~~~~i~~l~~H~~~V~sl~fsp-dg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~ 1141 (1306)
+.++ ++..++..|.+.|.++.|+| .+..|++||.|++|++.|.+... + .+
T Consensus 273 ~~~g--~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~--~------s~------------------- 323 (463)
T KOG0270|consen 273 VDTG--KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPS--N------SG------------------- 323 (463)
T ss_pred cCCC--CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcc--c------cC-------------------
Confidence 9999 89999999999999999999 67899999999999999998521 0 00
Q ss_pred eEEEEEecCCEEEeccCCCeEEEEEe---CCEEEEEECCCcEEEEECCCC-ceeEEecCcccccCCc-cEEEEEEeC-Cc
Q 000744 1142 GVKVYNWSGAIKHINFNKHVKSLVMT---GDKLYCGCSGYSIQEVDLGNL-TSTTFYAGTKKLLGKQ-TIHSLHMHN-GL 1215 (1306)
Q Consensus 1142 ~I~i~~~~~~~~l~~~~~~V~sl~~s---~d~L~sgs~Dg~I~iwDl~~~-~~~~~~~~~~~l~gh~-~I~sl~~s~-~~ 1215 (1306)
+-|...+.|-.+.|. ++.+++++.||+++-+|+|+. +++.+ +..|. +|.+++++. .-
T Consensus 324 -----------~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt------~~AHd~~ISgl~~n~~~p 386 (463)
T KOG0270|consen 324 -----------KEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWT------LKAHDDEISGLSVNIQTP 386 (463)
T ss_pred -----------ceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeE------EEeccCCcceEEecCCCC
Confidence 011123345555555 347899999999999999984 77663 55788 999999983 33
Q ss_pred EEEEEEecCCCEEEEEECCCCceEEEEec---CCCEEEEEEcCc---EEEEEECCCcEEEEECCCCeEEE
Q 000744 1216 LFAGGSSVDGTAGKVFSISSKTAVGSFTT---GIDIQHLAVNSD---FIFTATKCGTIEVWLKERVTRVA 1279 (1306)
Q Consensus 1216 ~llas~s~Dg~~I~IWD~~t~~~l~~l~~---~~~V~sla~spd---~Lasgs~Dg~I~IWd~~tg~~l~ 1279 (1306)
.++++++.|+ ++++|++..........+ -+...|.++.|+ +++.|+..+.++|||+.+...+.
T Consensus 387 ~~l~t~s~d~-~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 387 GLLSTASTDK-VVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred cceeeccccc-eEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence 3455566688 999999865443222222 123677788887 88999999999999998876543
No 117
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=8.3e-20 Score=213.33 Aligned_cols=224 Identities=18% Similarity=0.299 Sum_probs=188.3
Q ss_pred cccccccccccccc-----cEEEEEeCCCcEEEEeCCCceE--EcccCCCCEEEEEEeCC--EEEEEECCCcEEEEeCCC
Q 000744 995 RKLKKYSAVVTDIQ-----KALMNLSSVNATELWHCNEVTE--LDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDSGK 1065 (1306)
Q Consensus 995 ~~l~ghs~~V~~i~-----~~Lasgs~Dg~I~IWd~~~~~~--i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t 1065 (1306)
+.+-.|+..|.+.. +.+++|+.|..+-+|.+..... -+.+|.++|.||.|+.+ .|++|+.||+|++||++.
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee 101 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE 101 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence 45566777777766 8899999999999999875333 35799999999999985 899999999999999998
Q ss_pred CccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeec-CCCCeEEEEeCCcEEEEEcCCCeEE
Q 000744 1066 RVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHN-VKEAVHELTANAEIACFVSPATGVK 1144 (1306)
Q Consensus 1066 ~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~-~~~~V~sl~~~~~~v~~s~dg~~I~ 1144 (1306)
. +.++++.+|...+.++.|+|-+.++++|+.|+.+++||++.. -|...++ |...|..+. ++|+|+
T Consensus 102 A--k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~--Gc~~~~~s~~~vv~~l~-------lsP~Gr--- 167 (825)
T KOG0267|consen 102 A--KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK--GCSHTYKSHTRVVDVLR-------LSPDGR--- 167 (825)
T ss_pred h--hhhhhhhccccCcceeeeccceEEeccccccccceehhhhcc--CceeeecCCcceeEEEe-------ecCCCc---
Confidence 8 889999999999999999999999999999999999999854 3444443 444455555 677776
Q ss_pred EEEecCCEEEeccCCCeEEEEEeCCEEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEec
Q 000744 1145 VYNWSGAIKHINFNKHVKSLVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSV 1223 (1306)
Q Consensus 1145 i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~ 1223 (1306)
+++.|+.|.++++||+..|+....|. +|. .+.++.|+|...++++|+.
T Consensus 168 -------------------------~v~~g~ed~tvki~d~~agk~~~ef~------~~e~~v~sle~hp~e~Lla~Gs~ 216 (825)
T KOG0267|consen 168 -------------------------WVASGGEDNTVKIWDLTAGKLSKEFK------SHEGKVQSLEFHPLEVLLAPGSS 216 (825)
T ss_pred -------------------------eeeccCCcceeeeecccccccccccc------cccccccccccCchhhhhccCCC
Confidence 78899999999999999999988665 566 8999999999999999999
Q ss_pred CCCEEEEEECCCCceEEEEec-CCCEEEEEEcCc--EEEEEECC
Q 000744 1224 DGTAGKVFSISSKTAVGSFTT-GIDIQHLAVNSD--FIFTATKC 1264 (1306)
Q Consensus 1224 Dg~~I~IWD~~t~~~l~~l~~-~~~V~sla~spd--~Lasgs~D 1264 (1306)
|+ ++++||+++.+.+..... ..+|.+..|+|+ .+++|..+
T Consensus 217 d~-tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 217 DR-TVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred Cc-eeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence 98 999999999988888774 567999999999 55555443
No 118
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=3.2e-18 Score=192.42 Aligned_cols=249 Identities=14% Similarity=0.208 Sum_probs=185.4
Q ss_pred cEEEEEe-CCCcEEEEeCCCceEE--cccCCCCEEEEEEeCC--EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEE
Q 000744 1009 KALMNLS-SVNATELWHCNEVTEL--DSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTC 1083 (1306)
Q Consensus 1009 ~~Lasgs-~Dg~I~IWd~~~~~~i--~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~s 1083 (1306)
.+++++. .-..+.+|.+...... ..--.++|.|++-+|+ +|+.|+..|.|++|.+.+| ..+..+..|-..|+|
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG--~LL~v~~aHYQ~ITc 128 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSG--ILLNVLSAHYQSITC 128 (476)
T ss_pred hheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccc--cHHHHHHhhccceeE
Confidence 3455444 4567899998753332 2334688999999885 6666669999999999999 889999999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEE
Q 000744 1084 LYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKS 1163 (1306)
Q Consensus 1084 l~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~s 1163 (1306)
+.|+.||.+|+|||.||.|.+|++..- ++++... +......+.+|.-+|+.
T Consensus 129 L~fs~dgs~iiTgskDg~V~vW~l~~l-------------------------v~a~~~~----~~~p~~~f~~HtlsITD 179 (476)
T KOG0646|consen 129 LKFSDDGSHIITGSKDGAVLVWLLTDL-------------------------VSADNDH----SVKPLHIFSDHTLSITD 179 (476)
T ss_pred EEEeCCCcEEEecCCCccEEEEEEEee-------------------------cccccCC----CccceeeeccCcceeEE
Confidence 999999999999999999999997541 0111000 00001112235556666
Q ss_pred EEEeCC----EEEEEECCCcEEEEECCCCceeEEecCcccccCCccEEEEEEeCCcEEEEEEecCCCEEEEEECCCCc--
Q 000744 1164 LVMTGD----KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKT-- 1237 (1306)
Q Consensus 1164 l~~s~d----~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~-- 1237 (1306)
+....+ ++++.|.|.++++||+..|..+.++.-+. ++.++..+|....+..|+.+| .|.+.++....
T Consensus 180 l~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~------si~av~lDpae~~~yiGt~~G-~I~~~~~~~~~~~ 252 (476)
T KOG0646|consen 180 LQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPS------SIKAVALDPAERVVYIGTEEG-KIFQNLLFKLSGQ 252 (476)
T ss_pred EEecCCCccceEEEecCCceEEEEEeccceeeEEEecCC------cceeEEEcccccEEEecCCcc-eEEeeehhcCCcc
Confidence 666533 69999999999999999999887654322 889999998887777777788 68887764422
Q ss_pred --------------eEEEEecC---CCEEEEEEcCc--EEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEE
Q 000744 1238 --------------AVGSFTTG---IDIQHLAVNSD--FIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGT 1298 (1306)
Q Consensus 1238 --------------~l~~l~~~---~~V~sla~spd--~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slaf 1298 (1306)
.+..+.+| ..|+|++++-| .|++|+.||+|.|||+.+.++++++.. ..++|+.+.+
T Consensus 253 ~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~-----~kgpVtnL~i 327 (476)
T KOG0646|consen 253 SAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQT-----SKGPVTNLQI 327 (476)
T ss_pred cccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhh-----hccccceeEe
Confidence 23344433 36999999988 999999999999999999999998872 2357888887
Q ss_pred cC
Q 000744 1299 GV 1300 (1306)
Q Consensus 1299 Sp 1300 (1306)
.|
T Consensus 328 ~~ 329 (476)
T KOG0646|consen 328 NP 329 (476)
T ss_pred ec
Confidence 44
No 119
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=9.3e-19 Score=206.30 Aligned_cols=226 Identities=15% Similarity=0.196 Sum_probs=170.7
Q ss_pred cEEEEEeCCCcEEEEeCCC-----ceEEcccCCCCEEEEEEeC---CEEEEEECCCcEEEEeCCCCccceEEEEcccCcc
Q 000744 1009 KALMNLSSVNATELWHCNE-----VTELDSSTNGEVLSLIHLK---GRVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRA 1080 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~-----~~~i~~~H~~~V~sl~fsp---d~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~ 1080 (1306)
++|||++..|.|.+||+.. ....+..|...|+++.|++ ++|+|||.||+|++||++.. ....++.+....
T Consensus 101 NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~--~S~~t~~~nSES 178 (839)
T KOG0269|consen 101 NLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK--KSKSTFRSNSES 178 (839)
T ss_pred hhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc--cccccccccchh
Confidence 7899999999999999975 2335678999999999995 59999999999999999988 778888899999
Q ss_pred EEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCC
Q 000744 1081 VTCLYVPS-SGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNK 1159 (1306)
Q Consensus 1081 V~sl~fsp-dg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~ 1159 (1306)
|..|.|+| .+.+|+++...|.+..||++....-..+...|.++|.++. ++|++.
T Consensus 179 iRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~n-------whPnr~------------------ 233 (839)
T KOG0269|consen 179 IRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLN-------WHPNRE------------------ 233 (839)
T ss_pred hhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEe-------ecCCCc------------------
Confidence 99999999 7889999999999999999986421122222445555544 444333
Q ss_pred CeEEEEEeCCEEEEEECCCcEEEEECCCCceeEEecCcccccCCccEEEEEEeCCcE--EEEEEecCCCEEEEEECCCCc
Q 000744 1160 HVKSLVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLL--FAGGSSVDGTAGKVFSISSKT 1237 (1306)
Q Consensus 1160 ~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~--llas~s~Dg~~I~IWD~~t~~ 1237 (1306)
+|+||+.|++|+|||+.+.+...... +..-.+|..+.|-|... +..++..++..|+|||++..-
T Consensus 234 ----------~lATGGRDK~vkiWd~t~~~~~~~~t----InTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY 299 (839)
T KOG0269|consen 234 ----------WLATGGRDKMVKIWDMTDSRAKPKHT----INTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY 299 (839)
T ss_pred ----------eeeecCCCccEEEEeccCCCccceeE----EeecceeeeeeeccCccchhhhhhccccceEEEEeecccc
Confidence 79999999999999998754332111 11111899999986543 333333445589999997754
Q ss_pred -eEEEEe-cCCCEEEEEEcC-c--EEEEEECCCcEEEEECCCC
Q 000744 1238 -AVGSFT-TGIDIQHLAVNS-D--FIFTATKCGTIEVWLKERV 1275 (1306)
Q Consensus 1238 -~l~~l~-~~~~V~sla~sp-d--~Lasgs~Dg~I~IWd~~tg 1275 (1306)
+..++. |...++.++|.. | .+.+++.||+|..-.++++
T Consensus 300 IP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 300 IPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred ccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 455666 455588899965 3 9999999999877655543
No 120
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=2.4e-18 Score=202.82 Aligned_cols=211 Identities=17% Similarity=0.238 Sum_probs=165.8
Q ss_pred EEEEEEeC---CEEEEEECCCcEEEEeCCC-CccceEEEEcccCccEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcee
Q 000744 1039 VLSLIHLK---GRVLSSHSDGTIKMWDSGK-RVLRLIQEVREHTRAVTCLYVPS-SGDKLYSGSLDKTIRVWSIKPEEIH 1113 (1306)
Q Consensus 1039 V~sl~fsp---d~LaSgs~Dg~I~vWd~~t-~~~~~i~~l~~H~~~V~sl~fsp-dg~~L~Sgs~DgtI~VWdi~~~~~~ 1113 (1306)
+..|.|+. ++|+|++..|.|.+||+.. ...+.+..|..|+..|++++|++ ...+|+|||.||+||+||++..+
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~-- 167 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK-- 167 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc--
Confidence 44566764 5999999999999999976 11267788999999999999999 56799999999999999999863
Q ss_pred EEEee-cCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeC---CEEEEEECCCcEEEEECCCCc
Q 000744 1114 CLQVH-NVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTG---DKLYCGCSGYSIQEVDLGNLT 1189 (1306)
Q Consensus 1114 ~i~~~-~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~---d~L~sgs~Dg~I~iwDl~~~~ 1189 (1306)
....+ .. ...|..|.|+| ++++++...|.+++||++...
T Consensus 168 S~~t~~~n-------------------------------------SESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~ 210 (839)
T KOG0269|consen 168 SKSTFRSN-------------------------------------SESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD 210 (839)
T ss_pred cccccccc-------------------------------------chhhhceeeccCCCceEEEecCCceEEEeeccCch
Confidence 11111 11 23345555553 479999999999999999754
Q ss_pred -eeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCc--eEEEEecCCCEEEEEEcCc---EEEEEE
Q 000744 1190 -STTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKT--AVGSFTTGIDIQHLAVNSD---FIFTAT 1262 (1306)
Q Consensus 1190 -~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~--~l~~l~~~~~V~sla~spd---~Lasgs 1262 (1306)
+.. ++..|+ +|.++.|+|++.++++|+.|+ +|+|||+.++. .+.++....+|.+|.|-|+ .|++++
T Consensus 211 r~~~------k~~AH~GpV~c~nwhPnr~~lATGGRDK-~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcs 283 (839)
T KOG0269|consen 211 RCEK------KLTAHNGPVLCLNWHPNREWLATGGRDK-MVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCS 283 (839)
T ss_pred hHHH------HhhcccCceEEEeecCCCceeeecCCCc-cEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhh
Confidence 333 466888 999999999999999999998 89999998654 5666667788999999998 788776
Q ss_pred --CCCcEEEEECCCC-eEEEEEecccCCCCCCCeEEEEEcC
Q 000744 1263 --KCGTIEVWLKERV-TRVASVKANNSGGGHAKITCLGTGV 1300 (1306)
Q Consensus 1263 --~Dg~I~IWd~~tg-~~l~~l~~~~~~~~~~~V~slafSp 1300 (1306)
.|-.|+|||++.. -+..++.. |.+.++.++|..
T Consensus 284 mv~dtsV~VWDvrRPYIP~~t~~e-----H~~~vt~i~W~~ 319 (839)
T KOG0269|consen 284 MVVDTSVHVWDVRRPYIPYATFLE-----HTDSVTGIAWDS 319 (839)
T ss_pred ccccceEEEEeeccccccceeeec-----cCccccceeccC
Confidence 6789999999753 34555553 778888888865
No 121
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.78 E-value=4.8e-18 Score=191.11 Aligned_cols=235 Identities=15% Similarity=0.163 Sum_probs=178.3
Q ss_pred cccCCCCEEEEEEeC---CEEEEEECCCcEEEEeCCCCc--------cceEEEEcccCccEEEEEEcCC-CCEEEEEeCC
Q 000744 1032 DSSTNGEVLSLIHLK---GRVLSSHSDGTIKMWDSGKRV--------LRLIQEVREHTRAVTCLYVPSS-GDKLYSGSLD 1099 (1306)
Q Consensus 1032 ~~~H~~~V~sl~fsp---d~LaSgs~Dg~I~vWd~~t~~--------~~~i~~l~~H~~~V~sl~fspd-g~~L~Sgs~D 1099 (1306)
...|.+.|+.+.+.| +.+++++..+.|.|||..+.. ..+-.++.+|++.=++++|++. .-.+++|+.|
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence 356899999999887 389999999999999986431 1233478899998889999994 4589999999
Q ss_pred CcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCC---EEEEEEC
Q 000744 1100 KTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGD---KLYCGCS 1176 (1306)
Q Consensus 1100 gtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d---~L~sgs~ 1176 (1306)
++|++||+...... ..+.. ....+.+|...|..++|++- .+.+.+.
T Consensus 200 ~~i~lwdi~~~~~~--------~~~~~-----------------------p~~~~~~h~~~VeDV~~h~~h~~lF~sv~d 248 (422)
T KOG0264|consen 200 HTICLWDINAESKE--------DKVVD-----------------------PKTIFSGHEDVVEDVAWHPLHEDLFGSVGD 248 (422)
T ss_pred CcEEEEeccccccC--------Ccccc-----------------------ceEEeecCCcceehhhccccchhhheeecC
Confidence 99999999875210 00000 11122347788888888843 5899999
Q ss_pred CCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEe-CCcEEEEEEecCCCEEEEEECCC-CceEEEEecC-CCEEEEE
Q 000744 1177 GYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMH-NGLLFAGGSSVDGTAGKVFSISS-KTAVGSFTTG-IDIQHLA 1252 (1306)
Q Consensus 1177 Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s-~~~~llas~s~Dg~~I~IWD~~t-~~~l~~l~~~-~~V~sla 1252 (1306)
|+.+.|||+++++ . +......+|. +|+|+.|+ -++.+++++|.|+ +|.+||+++ .+++.++.+| ..|.+|.
T Consensus 249 d~~L~iwD~R~~~-~---~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~-tV~LwDlRnL~~~lh~~e~H~dev~~V~ 323 (422)
T KOG0264|consen 249 DGKLMIWDTRSNT-S---KPSHSVKAHSAEVNCVAFNPFNEFILATGSADK-TVALWDLRNLNKPLHTFEGHEDEVFQVE 323 (422)
T ss_pred CCeEEEEEcCCCC-C---CCcccccccCCceeEEEeCCCCCceEEeccCCC-cEEEeechhcccCceeccCCCcceEEEE
Confidence 9999999999631 1 1222456888 99999998 4677888888898 899999988 4577888754 5699999
Q ss_pred EcCc---EEEEEECCCcEEEEECCCCeEEEE------------EecccCCCCCCCeEEEEEcCCCCcc
Q 000744 1253 VNSD---FIFTATKCGTIEVWLKERVTRVAS------------VKANNSGGGHAKITCLGTGVDGHPY 1305 (1306)
Q Consensus 1253 ~spd---~Lasgs~Dg~I~IWd~~tg~~l~~------------l~~~~~~~~~~~V~slafSpdg~~L 1305 (1306)
|+|. .+++++.|+.+.|||+..-...+. |.- ++|...|..+.|+|+..+.
T Consensus 324 WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~H---gGH~~kV~DfsWnp~ePW~ 388 (422)
T KOG0264|consen 324 WSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIH---GGHTAKVSDFSWNPNEPWT 388 (422)
T ss_pred eCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEe---cCcccccccccCCCCCCeE
Confidence 9998 999999999999999874222111 221 5688999999999987664
No 122
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=2.1e-17 Score=177.25 Aligned_cols=267 Identities=16% Similarity=0.167 Sum_probs=191.9
Q ss_pred ccccccccccccccc-----cEEEEEeCCCcEEEEeCCCceEE----c--ccCCCCEEEEEEeCC---EEEEEECCCcEE
Q 000744 994 LRKLKKYSAVVTDIQ-----KALMNLSSVNATELWHCNEVTEL----D--SSTNGEVLSLIHLKG---RVLSSHSDGTIK 1059 (1306)
Q Consensus 994 l~~l~ghs~~V~~i~-----~~Lasgs~Dg~I~IWd~~~~~~i----~--~~H~~~V~sl~fspd---~LaSgs~Dg~I~ 1059 (1306)
+..|+||.+.|+++. ++|+|++.|++|++|+++....- . .-.-+.-+.+.|.|| .+++.-...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 567899999999987 99999999999999999752110 0 011234678899997 777777888999
Q ss_pred EEeCCCC---ccc----eE---EEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEe
Q 000744 1060 MWDSGKR---VLR----LI---QEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTA 1129 (1306)
Q Consensus 1060 vWd~~t~---~~~----~i---~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~ 1129 (1306)
+|..... ... .+ ..-+.|.-.|..+-...++.+|+|++.|.+|.+|+++.. .+...+.. ..
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq---~L~~idtn------q~ 229 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQ---LLQSIDTN------QS 229 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCc---eeeeeccc------cc
Confidence 9987432 100 01 111346667777877778899999999999999999953 33222211 11
Q ss_pred CCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCCEEEEEECCCcEEEEECCC---Cc---eeEEecCcccccCC
Q 000744 1130 NAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGDKLYCGCSGYSIQEVDLGN---LT---STTFYAGTKKLLGK 1203 (1306)
Q Consensus 1130 ~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~---~~---~~~~~~~~~~l~gh 1203 (1306)
++....++|+|+ ++++++..--+++|.+-- |. ..+.| .+.||
T Consensus 230 ~n~~aavSP~GR----------------------------Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf----~LkGH 277 (420)
T KOG2096|consen 230 SNYDAAVSPDGR----------------------------FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVF----SLKGH 277 (420)
T ss_pred cccceeeCCCCc----------------------------EEEEecCCCCceEEEEEeccCcchhhhhhhh----eeccc
Confidence 234445889998 667777777788887532 21 12222 47799
Q ss_pred c-cEEEEEEeCCcEEEEEEecCCCEEEEEECCC-------CceEEEEe-----cCCCEEEEEEcCc-EEEEEECCCcEEE
Q 000744 1204 Q-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISS-------KTAVGSFT-----TGIDIQHLAVNSD-FIFTATKCGTIEV 1269 (1306)
Q Consensus 1204 ~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t-------~~~l~~l~-----~~~~V~sla~spd-~Lasgs~Dg~I~I 1269 (1306)
+ .|...+|+++..-+++.|.|| +++|||++- .+.+++.. .++.-..+..+|+ -++..+....+++
T Consensus 278 ~saV~~~aFsn~S~r~vtvSkDG-~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~ 356 (420)
T KOG2096|consen 278 QSAVLAAAFSNSSTRAVTVSKDG-KWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKV 356 (420)
T ss_pred hhheeeeeeCCCcceeEEEecCC-cEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEE
Confidence 9 999999999988888889999 899999843 22333332 1333558999998 5555566678999
Q ss_pred EECCCCeEEEEEecccCCCCCCCeEEEEEcCCCCccC
Q 000744 1270 WLKERVTRVASVKANNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1270 Wd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~~La 1306 (1306)
+..++|+....+. ..|...|++++|++||+++|
T Consensus 357 ~~se~g~~~~~~e----~~h~~~Is~is~~~~g~~~a 389 (420)
T KOG2096|consen 357 FASEDGKDYPELE----DIHSTTISSISYSSDGKYIA 389 (420)
T ss_pred EEcccCccchhHH----HhhcCceeeEEecCCCcEEe
Confidence 9999999888887 45778999999999999985
No 123
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=7.4e-17 Score=193.93 Aligned_cols=244 Identities=17% Similarity=0.146 Sum_probs=188.6
Q ss_pred cEEEEEeCCCcEEEEeCCCc---eEEcccCCCCEEEEEEeCCEEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEE
Q 000744 1009 KALMNLSSVNATELWHCNEV---TELDSSTNGEVLSLIHLKGRVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLY 1085 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~---~~i~~~H~~~V~sl~fspd~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~ 1085 (1306)
++|++++.||.|++|+.... -.....|...|.+++...++|++|+.+++|.+|.+..+ +.-..+...+-++.+++
T Consensus 26 efi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~--~~~~iL~Rftlp~r~~~ 103 (933)
T KOG1274|consen 26 EFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSG--EEDTILARFTLPIRDLA 103 (933)
T ss_pred CEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCC--CccceeeeeeccceEEE
Confidence 79999999999999987532 22223388899999999999999999999999999887 33334444567899999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCCc-eeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEE
Q 000744 1086 VPSSGDKLYSGSLDKTIRVWSIKPEE-IHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSL 1164 (1306)
Q Consensus 1086 fspdg~~L~Sgs~DgtI~VWdi~~~~-~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl 1164 (1306)
|+.+|++++.||.|-.|++-+..+.. .+.+ .+|..+|.++
T Consensus 104 v~g~g~~iaagsdD~~vK~~~~~D~s~~~~l---------------------------------------rgh~apVl~l 144 (933)
T KOG1274|consen 104 VSGSGKMIAAGSDDTAVKLLNLDDSSQEKVL---------------------------------------RGHDAPVLQL 144 (933)
T ss_pred EecCCcEEEeecCceeEEEEeccccchheee---------------------------------------cccCCceeee
Confidence 99999999999999999999988752 1121 1244445555
Q ss_pred EEeCC--EEEEEECCCcEEEEECCCCceeEEecCcccccCC--c-cEEEEEEeCC-cEEEEEEecCCCEEEEEECCCCce
Q 000744 1165 VMTGD--KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGK--Q-TIHSLHMHNG-LLFAGGSSVDGTAGKVFSISSKTA 1238 (1306)
Q Consensus 1165 ~~s~d--~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh--~-~I~sl~~s~~-~~llas~s~Dg~~I~IWD~~t~~~ 1238 (1306)
.|+|+ +|++.+.||.+++||+.++.+..++.+..+-.+. . .+..++|+|+ +.+++-+ .|+ +|++|+..++..
T Consensus 145 ~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~-~d~-~Vkvy~r~~we~ 222 (933)
T KOG1274|consen 145 SYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP-VDN-TVKVYSRKGWEL 222 (933)
T ss_pred eEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeec-cCC-eEEEEccCCcee
Confidence 55533 7899999999999999999887776654322222 2 6778899976 6666554 587 899999999999
Q ss_pred EEEEec---CCCEEEEEEcCc--EEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCCCc
Q 000744 1239 VGSFTT---GIDIQHLAVNSD--FIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDGHP 1304 (1306)
Q Consensus 1239 l~~l~~---~~~V~sla~spd--~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~~ 1304 (1306)
...+.. ++.+..++|+|+ |||+++.||.|-|||+++-.. +.+ ...|++++|.|++.-
T Consensus 223 ~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-~~~--------~~~Vc~~aw~p~~n~ 284 (933)
T KOG1274|consen 223 QFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-HEF--------KRAVCCEAWKPNANA 284 (933)
T ss_pred heeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-ccc--------cceeEEEecCCCCCe
Confidence 888873 445999999998 999999999999999998222 211 247999999998764
No 124
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.75 E-value=3e-17 Score=189.94 Aligned_cols=260 Identities=15% Similarity=0.210 Sum_probs=188.3
Q ss_pred cEEEEEeCCCcEEEEeCCCce--------EEcccCCCCEEEEEEeCC--EEEEEECCCcEEEEeCCCCccceEEE--Ecc
Q 000744 1009 KALMNLSSVNATELWHCNEVT--------ELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDSGKRVLRLIQE--VRE 1076 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~~--------~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t~~~~~i~~--l~~ 1076 (1306)
++|+.+.+||.|.++|.+... .-...|.+.|..+.|-|. .|++++.|.++++||++++ .++.. +.|
T Consensus 65 HiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s--~l~G~~~~~G 142 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS--RLVGGRLNLG 142 (720)
T ss_pred ceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc--eeecceeecc
Confidence 889999999999999987421 234679999999999995 9999999999999999998 55555 889
Q ss_pred cCccEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcee-----E--------------------EEe-ecC----CCCeE
Q 000744 1077 HTRAVTCLYVPS-SGDKLYSGSLDKTIRVWSIKPEEIH-----C--------------------LQV-HNV----KEAVH 1125 (1306)
Q Consensus 1077 H~~~V~sl~fsp-dg~~L~Sgs~DgtI~VWdi~~~~~~-----~--------------------i~~-~~~----~~~V~ 1125 (1306)
|.+.|.+++|.| +...|++|+.||.|.|||++..... + +.. ..+ ...|+
T Consensus 143 H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvT 222 (720)
T KOG0321|consen 143 HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVT 222 (720)
T ss_pred cccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeE
Confidence 999999999999 5678999999999999999753200 0 000 001 12355
Q ss_pred EEEe--CCcEEEEEcCCCeEEEEEecCCEEEec-----------c---CCCeEEEEEe--CCEEEEEECCCcEEEEECCC
Q 000744 1126 ELTA--NAEIACFVSPATGVKVYNWSGAIKHIN-----------F---NKHVKSLVMT--GDKLYCGCSGYSIQEVDLGN 1187 (1306)
Q Consensus 1126 sl~~--~~~~v~~s~dg~~I~i~~~~~~~~l~~-----------~---~~~V~sl~~s--~d~L~sgs~Dg~I~iwDl~~ 1187 (1306)
.+.| ...++..+..+..|++||+........ + .-.+.++... +.++++.|.|++|++||+.+
T Consensus 223 vv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s 302 (720)
T KOG0321|consen 223 VVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRS 302 (720)
T ss_pred EEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccc
Confidence 5666 455565665445599999985433221 2 2234555554 57899999999999999987
Q ss_pred Cc--eeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceE-EEEec-CCCEEEEEEcCc---EEE
Q 000744 1188 LT--STTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAV-GSFTT-GIDIQHLAVNSD---FIF 1259 (1306)
Q Consensus 1188 ~~--~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l-~~l~~-~~~V~sla~spd---~La 1259 (1306)
-. ++..|.++. ... .|. -..+|++.++++|+.|. ..++|.+.+.+.- ..+.+ ...|++++|.|. -++
T Consensus 303 ~s~sP~~~~sg~~---~~sf~vk-s~lSpd~~~l~SgSsd~-~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~ 377 (720)
T KOG0321|consen 303 LSISPVAEFSGKL---NSSFYVK-SELSPDDCSLLSGSSDE-QAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVA 377 (720)
T ss_pred cCcCchhhccCcc---cceeeee-eecCCCCceEeccCCCc-ceeeeeecCccCChhhhhCcceEEEEEeeccccCCCce
Confidence 43 333332211 001 111 12358888899999999 7999999886543 33334 456999999886 788
Q ss_pred EEECCCcEEEEECCCC
Q 000744 1260 TATKCGTIEVWLKERV 1275 (1306)
Q Consensus 1260 sgs~Dg~I~IWd~~tg 1275 (1306)
++++|..++||++..+
T Consensus 378 TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 378 TCSDDFRVKIWRLSNG 393 (720)
T ss_pred eeccCcceEEEeccCc
Confidence 8899999999999654
No 125
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=3.3e-16 Score=160.46 Aligned_cols=239 Identities=16% Similarity=0.186 Sum_probs=181.1
Q ss_pred ccccccccccccccc-----cEEEEEeCCCcEEEEeCCC--ce-----EEcccCCCCEEEEEEeCC------EEEEEE-C
Q 000744 994 LRKLKKYSAVVTDIQ-----KALMNLSSVNATELWHCNE--VT-----ELDSSTNGEVLSLIHLKG------RVLSSH-S 1054 (1306)
Q Consensus 994 l~~l~ghs~~V~~i~-----~~Lasgs~Dg~I~IWd~~~--~~-----~i~~~H~~~V~sl~fspd------~LaSgs-~ 1054 (1306)
.++-+.|.+.+.+.. +++++|+.|++|++..+.. .+ ..+..|.+.|..++|-.+ .|++++ .
T Consensus 82 ~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gag 161 (350)
T KOG0641|consen 82 CKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAG 161 (350)
T ss_pred eeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCC
Confidence 355567888887765 9999999999999976542 21 223468999999999742 666655 4
Q ss_pred CCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEE
Q 000744 1055 DGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIA 1134 (1306)
Q Consensus 1055 Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v 1134 (1306)
|..|++-|..+| +..+.+.+|++-|.++. +-+|-++++|+.|.+|+.||++-. .|+...+..
T Consensus 162 dc~iy~tdc~~g--~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~--~~v~~l~~~------------- 223 (350)
T KOG0641|consen 162 DCKIYITDCGRG--QGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVN--SCVNTLDND------------- 223 (350)
T ss_pred cceEEEeecCCC--CcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeecc--ceeeeccCc-------------
Confidence 677888888888 88999999999998873 346889999999999999999876 444443310
Q ss_pred EEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCC--EEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEE
Q 000744 1135 CFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGD--KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHM 1211 (1306)
Q Consensus 1135 ~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d--~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~ 1211 (1306)
+...|- ..+.|.++++.|. .+++|-.|....+||++.+..++.|. .|+ .|+++.|
T Consensus 224 -~~~~gl---------------essavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~------phsadir~vrf 281 (350)
T KOG0641|consen 224 -FHDGGL---------------ESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFH------PHSADIRCVRF 281 (350)
T ss_pred -ccCCCc---------------ccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeC------CCccceeEEEe
Confidence 000010 1234555555543 68999999999999999999999765 455 9999999
Q ss_pred eCCcEEEEEEecCCCEEEEEECCCC---c--eEEEEecCCCEEEEEEcCc--EEEEEECCCcEEEEECC
Q 000744 1212 HNGLLFAGGSSVDGTAGKVFSISSK---T--AVGSFTTGIDIQHLAVNSD--FIFTATKCGTIEVWLKE 1273 (1306)
Q Consensus 1212 s~~~~llas~s~Dg~~I~IWD~~t~---~--~l~~l~~~~~V~sla~spd--~Lasgs~Dg~I~IWd~~ 1273 (1306)
+|+..|+.+++.|. .|++-|+... + .+..-.|...+..+.|+|. .+++.+.|.++.+|-+.
T Consensus 282 sp~a~yllt~syd~-~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 282 SPGAHYLLTCSYDM-KIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred CCCceEEEEecccc-eEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 99999999999998 7999998642 1 1112235667889999997 78899999999999764
No 126
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.75 E-value=9.7e-17 Score=171.72 Aligned_cols=235 Identities=12% Similarity=0.144 Sum_probs=167.6
Q ss_pred CCceEEcccCCCCEEEEEEeCC---EEEEEECCCcEEEEeCCC-CccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCc
Q 000744 1026 NEVTELDSSTNGEVLSLIHLKG---RVLSSHSDGTIKMWDSGK-RVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKT 1101 (1306)
Q Consensus 1026 ~~~~~i~~~H~~~V~sl~fspd---~LaSgs~Dg~I~vWd~~t-~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~Dgt 1101 (1306)
.....+.......|.+|+|||. .++.||.||+||+|+++. |.... .....|.++|.+++|+.||..+++|+.|+.
T Consensus 17 ~kd~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~ 95 (347)
T KOG0647|consen 17 NKDYEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQ 95 (347)
T ss_pred ccceecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCceEEeeccCCc
Confidence 3445556677889999999993 778999999999999976 42222 445679999999999999999999999999
Q ss_pred EEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCCEEEEEECCCcEE
Q 000744 1102 IRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGDKLYCGCSGYSIQ 1181 (1306)
Q Consensus 1102 I~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~Dg~I~ 1181 (1306)
+++||+.+++...+..| .++|..+.| .+... -..|+|||.|.+|+
T Consensus 96 ~k~wDL~S~Q~~~v~~H--d~pvkt~~w-------v~~~~--------------------------~~cl~TGSWDKTlK 140 (347)
T KOG0647|consen 96 AKLWDLASGQVSQVAAH--DAPVKTCHW-------VPGMN--------------------------YQCLVTGSWDKTLK 140 (347)
T ss_pred eEEEEccCCCeeeeeec--ccceeEEEE-------ecCCC--------------------------cceeEeccccccee
Confidence 99999999854444333 366666652 21111 01489999999999
Q ss_pred EEECCCCceeEEecCcccccCCccEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEE-Ee--cCCCEEEEEEcCc--
Q 000744 1182 EVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGS-FT--TGIDIQHLAVNSD-- 1256 (1306)
Q Consensus 1182 iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~-l~--~~~~V~sla~spd-- 1256 (1306)
.||++...++.+..-+. .++++..-..-..++++ +. .|.+|+++++..... +. -.-.+.||+..+|
T Consensus 141 fWD~R~~~pv~t~~LPe------RvYa~Dv~~pm~vVata--~r-~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~ 211 (347)
T KOG0647|consen 141 FWDTRSSNPVATLQLPE------RVYAADVLYPMAVVATA--ER-HIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKD 211 (347)
T ss_pred ecccCCCCeeeeeeccc------eeeehhccCceeEEEec--CC-cEEEEEcCCCcchhhhhcCcccceeeEEEEEecCC
Confidence 99999988887654222 56666665555555554 66 699999987643322 22 1345889988776
Q ss_pred EEEEEECCCcEEEEECCCC--eEEEEEecccCCC-C---CCCeEEEEEcCCCCcc
Q 000744 1257 FIFTATKCGTIEVWLKERV--TRVASVKANNSGG-G---HAKITCLGTGVDGHPY 1305 (1306)
Q Consensus 1257 ~Lasgs~Dg~I~IWd~~tg--~~l~~l~~~~~~~-~---~~~V~slafSpdg~~L 1305 (1306)
..+.|+-.|.+-|..+..+ +.-.+|+.|.... . -..|++++|+|.-..|
T Consensus 212 ~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtl 266 (347)
T KOG0647|consen 212 GFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTL 266 (347)
T ss_pred ceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceE
Confidence 6699999999999999876 3334455432111 1 1358889999975544
No 127
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.75 E-value=3.6e-16 Score=166.14 Aligned_cols=265 Identities=15% Similarity=0.161 Sum_probs=191.6
Q ss_pred eEEcccCCCCEEEEEEeC---CEEEEEECCCcEEEEeCCCCc----------cceE---EEEcccCccEEEEEEcC-CCC
Q 000744 1029 TELDSSTNGEVLSLIHLK---GRVLSSHSDGTIKMWDSGKRV----------LRLI---QEVREHTRAVTCLYVPS-SGD 1091 (1306)
Q Consensus 1029 ~~i~~~H~~~V~sl~fsp---d~LaSgs~Dg~I~vWd~~t~~----------~~~i---~~l~~H~~~V~sl~fsp-dg~ 1091 (1306)
..+...|.+.|.++...+ .++++|+.||.|.+||++.-. ..|+ ..-.+|+..|.++.|-| |..
T Consensus 36 ~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG 115 (397)
T KOG4283|consen 36 KDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG 115 (397)
T ss_pred cceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc
Confidence 445578889999999987 399999999999999986431 0111 11246888999999999 667
Q ss_pred EEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEe-----CCcEEEEEcCCCeEEEEEecCC---EEEeccCCCeEE
Q 000744 1092 KLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTA-----NAEIACFVSPATGVKVYNWSGA---IKHINFNKHVKS 1163 (1306)
Q Consensus 1092 ~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~-----~~~~v~~s~dg~~I~i~~~~~~---~~l~~~~~~V~s 1163 (1306)
+|.|+|.|.++||||.++- +....+...+.|++-++ ..-++....++..|++.+.... ..+.+|.+.|.+
T Consensus 116 mFtssSFDhtlKVWDtnTl--Q~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vla 193 (397)
T KOG4283|consen 116 MFTSSSFDHTLKVWDTNTL--QEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLA 193 (397)
T ss_pred eeecccccceEEEeecccc--eeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEE
Confidence 9999999999999999986 45555666677777666 3456778888888999998833 456789999999
Q ss_pred EEEeCC---EEEEEECCCcEEEEECCCC-ceeEEecCcc--------cccCCc-cEEEEEEeCCcEEEEEEecCCCEEEE
Q 000744 1164 LVMTGD---KLYCGCSGYSIQEVDLGNL-TSTTFYAGTK--------KLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKV 1230 (1306)
Q Consensus 1164 l~~s~d---~L~sgs~Dg~I~iwDl~~~-~~~~~~~~~~--------~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~I 1230 (1306)
+.|+|. .|++|+.||.|++||++.- .+...+..+. .-..|. .|+.++|..++.++.+.+.|+ .+++
T Consensus 194 V~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~-r~r~ 272 (397)
T KOG4283|consen 194 VEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDD-RIRV 272 (397)
T ss_pred EEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCcc-ceEE
Confidence 999987 3899999999999999864 4444443332 123566 899999998877777777888 6999
Q ss_pred EECCCCceE-EEE---ecC----CCEEEEEEcCcEEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCC
Q 000744 1231 FSISSKTAV-GSF---TTG----IDIQHLAVNSDFIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVD 1301 (1306)
Q Consensus 1231 WD~~t~~~l-~~l---~~~----~~V~sla~spd~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpd 1301 (1306)
|+..+|.-. ..+ .++ -.+.--+.+.+.++---.|+.+.++++-.|..+..+.. |-..|.+..+-||
T Consensus 273 wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~-----h~k~i~c~~~~~~ 346 (397)
T KOG4283|consen 273 WNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLST-----HLKRINCAAYRPD 346 (397)
T ss_pred eecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeec-----ccceeeEEeecCc
Confidence 999887531 111 111 11221122223333344558889999988888888875 4456777777665
No 128
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.3e-16 Score=179.03 Aligned_cols=256 Identities=13% Similarity=0.187 Sum_probs=197.7
Q ss_pred CCCEEEEEEeCC--EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCce
Q 000744 1036 NGEVLSLIHLKG--RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGD-KLYSGSLDKTIRVWSIKPEEI 1112 (1306)
Q Consensus 1036 ~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~-~L~Sgs~DgtI~VWdi~~~~~ 1112 (1306)
.+.|++|.|+|. .+++++.||+++||.++......++.+.--..+|.+..|.|+|. .++++|.-..+..||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 678999999996 99999999999999998665467777766778999999999998 899999999999999998764
Q ss_pred eEEEeec-C-CCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEe-----------ccCCCeEEEEEeCC--EEEEEECC
Q 000744 1113 HCLQVHN-V-KEAVHELTANAEIACFVSPATGVKVYNWSGAIKHI-----------NFNKHVKSLVMTGD--KLYCGCSG 1177 (1306)
Q Consensus 1113 ~~i~~~~-~-~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~-----------~~~~~V~sl~~s~d--~L~sgs~D 1177 (1306)
..+.... + ...+.... ++++++.|.+-...|-+.+. ...+.|..++|+.+ .|++.+.+
T Consensus 293 ~k~~~~~g~e~~~~e~Fe-------VShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~ 365 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFE-------VSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGT 365 (514)
T ss_pred ccccCCCCcccchhheeE-------ecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCC
Confidence 3333221 1 22344444 67777777666666655554 24678999999855 68888899
Q ss_pred CcEEEEECCCCceeEEecCcccccCCccEEEEEEeCCcEEEEEEecCCCEEEEEECCC------CceEEEEec-CCCEEE
Q 000744 1178 YSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLLFAGGSSVDGTAGKVFSISS------KTAVGSFTT-GIDIQH 1250 (1306)
Q Consensus 1178 g~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t------~~~l~~l~~-~~~V~s 1250 (1306)
|.|.+||++...++..|.....+ .-++++.+.++.|+++||..| .|.|||.++ .+++.++.. ...|++
T Consensus 366 GeV~v~nl~~~~~~~rf~D~G~v----~gts~~~S~ng~ylA~GS~~G-iVNIYd~~s~~~s~~PkPik~~dNLtt~Its 440 (514)
T KOG2055|consen 366 GEVYVWNLRQNSCLHRFVDDGSV----HGTSLCISLNGSYLATGSDSG-IVNIYDGNSCFASTNPKPIKTVDNLTTAITS 440 (514)
T ss_pred ceEEEEecCCcceEEEEeecCcc----ceeeeeecCCCceEEeccCcc-eEEEeccchhhccCCCCchhhhhhhheeeee
Confidence 99999999999999887643322 336778888888999997555 999999654 345555543 567999
Q ss_pred EEEcCc--EEEEEE--CCCcEEEEECCCCeEEEEEecccCCCCC-CCeEEEEEcCCCCccC
Q 000744 1251 LAVNSD--FIFTAT--KCGTIEVWLKERVTRVASVKANNSGGGH-AKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1251 la~spd--~Lasgs--~Dg~I~IWd~~tg~~l~~l~~~~~~~~~-~~V~slafSpdg~~La 1306 (1306)
+.|++| +|+.+| .+..+++-.+.+......|+. .+.. +.|+||+|||.|.+||
T Consensus 441 l~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~---~n~~vg~vtc~aFSP~sG~lA 498 (514)
T KOG2055|consen 441 LQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPT---SNTKVGHVTCMAFSPNSGYLA 498 (514)
T ss_pred eeeCcchhhhhhhhhccccceEEEeccceeeeccCCC---CCCcccceEEEEecCCCceEE
Confidence 999999 555554 668999999999888888875 2222 6899999999998875
No 129
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=7e-18 Score=183.84 Aligned_cols=309 Identities=19% Similarity=0.231 Sum_probs=240.4
Q ss_pred hChhhHHHhhcCCCCHHHHHHHHHHHHHHhhhcCCCcccccccccccchHHHHHHHhcCCcHHHHHHHHHHHHHHhccCc
Q 000744 488 NGLKPYVTCLCTSENLQECETAVLAIARLWKESKGDPGVHAYLLKPTIINGFAEILSASLSREVLRTSVYILSELMVADE 567 (1306)
Q Consensus 488 ~~~~~~l~~Ll~s~~~~~~e~Av~~i~~L~~~~~~~~~~~~~i~~~~~I~~Lv~~L~~~~~~~~~e~Av~~L~~L~s~~~ 567 (1306)
.|+.+++.. ..++..+.|.+||..|.+|+-.+.++ ..|+..|++.++.+ |..+++..+|.+|..+|++|....|
T Consensus 126 ~Gl~~Li~q-mmtd~vevqcnaVgCitnLaT~d~nk----~kiA~sGaL~pltr-LakskdirvqrnatgaLlnmThs~E 199 (550)
T KOG4224|consen 126 LGLDLLILQ-MMTDGVEVQCNAVGCITNLATFDSNK----VKIARSGALEPLTR-LAKSKDIRVQRNATGALLNMTHSRE 199 (550)
T ss_pred cChHHHHHH-hcCCCcEEEeeehhhhhhhhccccch----hhhhhccchhhhHh-hcccchhhHHHHHHHHHHHhhhhhh
Confidence 344555554 45677788899999999999987544 69999999999999 7777799999999999999966555
Q ss_pred cccccccccCCchHHHHHHHhcCh----HHHHHHHhccCC---CHHHHhhCC--chHHHHHHhhcCCccccchhcccCch
Q 000744 568 SVGDILTSVDSDFDCLAALLKNGL----GEAAVLIYQLRP---AFAQLSAHE--FIPSLVQLVLNKTEEFDELQFVMEPK 638 (1306)
Q Consensus 568 ~~~~~I~~~~~~i~~Lv~lLk~g~----~~Aa~aL~~L~~---~~~~i~~~g--~i~~Lv~ll~~g~~~~~~~~~~~~~k 638 (1306)
||+.++. +|++|.||.+|++|. ..+..+|-++.. ++..+++.| .||.||+|+.+|+++.+ =
T Consensus 200 -nRr~LV~-aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvk--------c 269 (550)
T KOG4224|consen 200 -NRRVLVH-AGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVK--------C 269 (550)
T ss_pred -hhhhhhc-cCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHH--------H
Confidence 8888886 999999999999987 678999999977 888899988 99999999999985543 2
Q ss_pred HHHHHHHHHHHccCCCCCchhhhhHhhcCCCHHHHHhhcCChhHHHHHHH-HHHhhhhccchhHHHHHHhcccchhhhhh
Q 000744 639 DAAIEMLEQILMGGDKKSRSITALSLISANGIPALIKCLDRVEVRRSIVS-ILLCCMHADKSCKTLIAKRIELSHVLDLF 717 (1306)
Q Consensus 639 ~aa~~lL~~l~~~~~~~~~~~n~~~i~~~g~i~~Lv~~l~~~~~~~~~~~-~L~~~~~~~~~~r~~i~~~~~~~~l~~ll 717 (1306)
.|+.|+ . +++...+-...|+++|++|.||++|-+.-.+..++. .-.+.+.-...+...|++.|=+.|||+||
T Consensus 270 qA~lAL-r------nlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL 342 (550)
T KOG4224|consen 270 QAGLAL-R------NLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLL 342 (550)
T ss_pred HHHHHH-h------hhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHH
Confidence 244443 3 445556778899999999999999922222222222 22223455677788999999999999999
Q ss_pred hcCCch-hHhHHHHHHHHHHhcchhhhHHHHHHHhhhcCCcchHHHHHHHhhcCCCcchhhHHHHHHhhhcccCCccccc
Q 000744 718 HDGNDS-VRGICINFLSELVLLNRRTFSNQILQVIRDEGSFSTMHTFLVYLQMAPMEQQPATASLLLQLDLLVEPRKMSM 796 (1306)
Q Consensus 718 ~~g~~~-~k~~a~~~L~~L~~~~~~~~~~~~l~~i~~~g~~~~m~~ll~~l~~~~~~~~~~~A~~l~~l~~l~~~~~~~~ 796 (1306)
+.|... .|..|+..|..|.-. .+.-.+.|...|+++- +..++..+|-+-|.-+..-+.||.+-++ .|.-.
T Consensus 343 ~~~dnEeiqchAvstLrnLAas-----se~n~~~i~esgAi~k---l~eL~lD~pvsvqseisac~a~Lal~d~-~k~~l 413 (550)
T KOG4224|consen 343 RAGDNEEIQCHAVSTLRNLAAS-----SEHNVSVIRESGAIPK---LIELLLDGPVSVQSEISACIAQLALNDN-DKEAL 413 (550)
T ss_pred hcCCchhhhhhHHHHHHHHhhh-----hhhhhHHHhhcCchHH---HHHHHhcCChhHHHHHHHHHHHHHhccc-cHHHH
Confidence 988666 799999999999643 3455688999999887 8888899999999999999999987544 34444
Q ss_pred cHHHHHHHHHHHHhcCCCchHHHHHHHHHHhcc
Q 000744 797 YREEAVEALIEALRRKDFPNSQMMALDALLSLT 829 (1306)
Q Consensus 797 ~reeai~~l~~~l~~~~~~~~q~~aa~~l~~l~ 829 (1306)
...+-++.|+. +..+++..+|-.||.||.||.
T Consensus 414 ld~gi~~iLIp-~t~s~s~Ev~gNaAaAL~Nls 445 (550)
T KOG4224|consen 414 LDSGIIPILIP-WTGSESEEVRGNAAAALINLS 445 (550)
T ss_pred hhcCCcceeec-ccCccchhhcccHHHHHHhhh
Confidence 45566666554 333444577888999999984
No 130
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=3.6e-16 Score=167.65 Aligned_cols=256 Identities=11% Similarity=0.156 Sum_probs=184.4
Q ss_pred ccccccccccc-----cEEEEEeCCCcEEEEeCCC------ceEEcccCCCCEEEEEEeC----CEEEEEECCCcEEEEe
Q 000744 998 KKYSAVVTDIQ-----KALMNLSSVNATELWHCNE------VTELDSSTNGEVLSLIHLK----GRVLSSHSDGTIKMWD 1062 (1306)
Q Consensus 998 ~ghs~~V~~i~-----~~Lasgs~Dg~I~IWd~~~------~~~i~~~H~~~V~sl~fsp----d~LaSgs~Dg~I~vWd 1062 (1306)
.+|.+.|.++. +.+|||+.|++|+|||.+. ...-...|.+.|..|.|-+ +.+++++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 46777777765 8899999999999999653 3444578999999999974 4899999999999998
Q ss_pred CCC-------CccceEEEEcccCccEEEEEEcC--CCCEEEEEeCCCcEEEEEcCCCc-ee---EEEeec--------CC
Q 000744 1063 SGK-------RVLRLIQEVREHTRAVTCLYVPS--SGDKLYSGSLDKTIRVWSIKPEE-IH---CLQVHN--------VK 1121 (1306)
Q Consensus 1063 ~~t-------~~~~~i~~l~~H~~~V~sl~fsp--dg~~L~Sgs~DgtI~VWdi~~~~-~~---~i~~~~--------~~ 1121 (1306)
-.. ..+....++......|+.|.|.| -|-.+++++.||++|||+.-..- +. ....+. +.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 621 23455667778888999999999 57899999999999999875431 11 111111 45
Q ss_pred CCeEEEEe-----CCcEEEEEcCC-----CeEEEEEecCCE-------EEeccCCCeEEEEEeCC------EEEEEECCC
Q 000744 1122 EAVHELTA-----NAEIACFVSPA-----TGVKVYNWSGAI-------KHINFNKHVKSLVMTGD------KLYCGCSGY 1178 (1306)
Q Consensus 1122 ~~V~sl~~-----~~~~v~~s~dg-----~~I~i~~~~~~~-------~l~~~~~~V~sl~~s~d------~L~sgs~Dg 1178 (1306)
.+..|+.| ....+.++.+. +.+++|..+... .+-+|+.+|+.++|.|+ .|++++.||
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg 249 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG 249 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence 66778887 34555555554 347788777433 23478999999999987 389999999
Q ss_pred cEEEEECCCCc------------eeEEec--CcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECC---CCceEE
Q 000744 1179 SIQEVDLGNLT------------STTFYA--GTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSIS---SKTAVG 1240 (1306)
Q Consensus 1179 ~I~iwDl~~~~------------~~~~~~--~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~---t~~~l~ 1240 (1306)
|+||.+.... ....+. ....+.+|+ .|+.+.|+=.+.++++++.|| ++|+|... ..+|..
T Consensus 250 -v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG-~VRLWkany~n~~kC~s 327 (361)
T KOG2445|consen 250 -VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDG-CVRLWKANYNNLWKCTS 327 (361)
T ss_pred -EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCc-eeeehhhhhhhhheeee
Confidence 9999987411 000010 011356788 999999997777777777677 89999763 356777
Q ss_pred EEecCCCEEEEEEcC
Q 000744 1241 SFTTGIDIQHLAVNS 1255 (1306)
Q Consensus 1241 ~l~~~~~V~sla~sp 1255 (1306)
.+.....++...|++
T Consensus 328 v~~~e~~~~~~~~~~ 342 (361)
T KOG2445|consen 328 VLKAEGSVTKPDFSQ 342 (361)
T ss_pred EEeccCCCCCccccc
Confidence 777666665555544
No 131
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.74 E-value=7.5e-17 Score=176.79 Aligned_cols=217 Identities=17% Similarity=0.231 Sum_probs=162.1
Q ss_pred cEEEEEeCCCcEEEEeCCC------------------ceEEcccCCCCEEEEEEeC---CEEEEEECCCcEEEEeCCCCc
Q 000744 1009 KALMNLSSVNATELWHCNE------------------VTELDSSTNGEVLSLIHLK---GRVLSSHSDGTIKMWDSGKRV 1067 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~------------------~~~i~~~H~~~V~sl~fsp---d~LaSgs~Dg~I~vWd~~t~~ 1067 (1306)
.+.++=+..|.|+|||+.. ......+|.+.=+.++||| ..|+||..-+.|++|...++.
T Consensus 166 ~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~ 245 (440)
T KOG0302|consen 166 VLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGS 245 (440)
T ss_pred ceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCc
Confidence 5677778899999999852 1223457888889999999 379999999999999999886
Q ss_pred cceE-EEEcccCccEEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCc-eeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEE
Q 000744 1068 LRLI-QEVREHTRAVTCLYVPSS-GDKLYSGSLDKTIRVWSIKPEE-IHCLQVHNVKEAVHELTANAEIACFVSPATGVK 1144 (1306)
Q Consensus 1068 ~~~i-~~l~~H~~~V~sl~fspd-g~~L~Sgs~DgtI~VWdi~~~~-~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~ 1144 (1306)
++.- ..|.+|+..|..++|||. ...|+|||.||+|+|||++.+. ..++....
T Consensus 246 W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kA------------------------- 300 (440)
T KOG0302|consen 246 WKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKA------------------------- 300 (440)
T ss_pred eeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeec-------------------------
Confidence 5432 345689999999999994 5689999999999999999873 22222211
Q ss_pred EEEecCCEEEeccCCCeEEEEEeCC--EEEEEECCCcEEEEECCC---CceeEEecCcccccCCc-cEEEEEEeC--CcE
Q 000744 1145 VYNWSGAIKHINFNKHVKSLVMTGD--KLYCGCSGYSIQEVDLGN---LTSTTFYAGTKKLLGKQ-TIHSLHMHN--GLL 1216 (1306)
Q Consensus 1145 i~~~~~~~~l~~~~~~V~sl~~s~d--~L~sgs~Dg~I~iwDl~~---~~~~~~~~~~~~l~gh~-~I~sl~~s~--~~~ 1216 (1306)
|++.|+-|+|+.+ .|++|+.||+++|||+++ ++++..|+ -|. +|++|.|+| +..
T Consensus 301 ------------h~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk------~Hk~pItsieW~p~e~s~ 362 (440)
T KOG0302|consen 301 ------------HNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFK------YHKAPITSIEWHPHEDSV 362 (440)
T ss_pred ------------cCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEE------eccCCeeEEEeccccCce
Confidence 4556666667643 699999999999999997 44555444 555 999999984 456
Q ss_pred EEEEEecCCCEEEEEECCCC-------------------ceEEEEecCCCEEEEEEcCc---EEEEEECCCcEEEEE
Q 000744 1217 FAGGSSVDGTAGKVFSISSK-------------------TAVGSFTTGIDIQHLAVNSD---FIFTATKCGTIEVWL 1271 (1306)
Q Consensus 1217 llas~s~Dg~~I~IWD~~t~-------------------~~l~~l~~~~~V~sla~spd---~Lasgs~Dg~I~IWd 1271 (1306)
++++| .|+ +|.+||+... +++..-+++..|..+.|++. ++++.+.|| +.||.
T Consensus 363 iaasg-~D~-QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 363 IAASG-EDN-QITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred EEecc-CCC-cEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 66665 577 8999998532 12333334556899999976 999999998 44443
No 132
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.74 E-value=2.7e-17 Score=184.79 Aligned_cols=246 Identities=13% Similarity=0.168 Sum_probs=186.8
Q ss_pred cEEEEEeCCCcEEEEeCCCc------eEEcc-cCCCCEEEEEEeCC--EEEEEECCCcEEEEeCCCCccceEEEEcccCc
Q 000744 1009 KALMNLSSVNATELWHCNEV------TELDS-STNGEVLSLIHLKG--RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTR 1079 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~------~~i~~-~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~ 1079 (1306)
+.+.||+. |.|+|||+... .++.. ...+-|.++...|| .|++|+.-.++.|||+..........+....-
T Consensus 432 rhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssap 510 (705)
T KOG0639|consen 432 RHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAP 510 (705)
T ss_pred ceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcch
Confidence 78999998 99999999742 11111 23566888888886 89999999999999998763233333433344
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeec-CCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccC
Q 000744 1080 AVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHN-VKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFN 1158 (1306)
Q Consensus 1080 ~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~-~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~ 1158 (1306)
..+.++.+||.+..+++..||.|.|||+.+. ..++.+. |.+.+.||. ++.||.
T Consensus 511 aCyALa~spDakvcFsccsdGnI~vwDLhnq--~~VrqfqGhtDGascId-------is~dGt----------------- 564 (705)
T KOG0639|consen 511 ACYALAISPDAKVCFSCCSDGNIAVWDLHNQ--TLVRQFQGHTDGASCID-------ISKDGT----------------- 564 (705)
T ss_pred hhhhhhcCCccceeeeeccCCcEEEEEcccc--eeeecccCCCCCceeEE-------ecCCCc-----------------
Confidence 6778999999999999999999999999986 3333332 456666666 666665
Q ss_pred CCeEEEEEeCCEEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCc
Q 000744 1159 KHVKSLVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKT 1237 (1306)
Q Consensus 1159 ~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~ 1237 (1306)
.|.+|+-|+++|.||++++..+... ... .|.++...|.+.+++.|-.++ .+.|......+
T Consensus 565 -----------klWTGGlDntvRcWDlregrqlqqh-------dF~SQIfSLg~cP~~dWlavGMens-~vevlh~skp~ 625 (705)
T KOG0639|consen 565 -----------KLWTGGLDNTVRCWDLREGRQLQQH-------DFSSQIFSLGYCPTGDWLAVGMENS-NVEVLHTSKPE 625 (705)
T ss_pred -----------eeecCCCccceeehhhhhhhhhhhh-------hhhhhheecccCCCccceeeecccC-cEEEEecCCcc
Confidence 7999999999999999998765521 112 899999999998888886555 57776654443
Q ss_pred eEEEEecCCCEEEEEEcCc--EEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCCCccC
Q 000744 1238 AVGSFTTGIDIQHLAVNSD--FIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1238 ~l~~l~~~~~V~sla~spd--~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~~La 1306 (1306)
....-.|.+-|.++.|.+. ++++.+.|+.+..|...-|..+...+ ....|.++.+|.|.+|||
T Consensus 626 kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk------E~SsVlsCDIS~ddkyIV 690 (705)
T KOG0639|consen 626 KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK------ESSSVLSCDISFDDKYIV 690 (705)
T ss_pred ceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc------ccCcceeeeeccCceEEE
Confidence 3333335667999999886 99999999999999999988776665 346899999999999985
No 133
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.73 E-value=1.4e-16 Score=178.64 Aligned_cols=265 Identities=14% Similarity=0.092 Sum_probs=191.0
Q ss_pred EcccCCCCEEEEEEeCC----EEEEEECCCcEEEEeCCCC--ccceEEEEcccCccEEEEEEcC-CCCEEEEEeCCCcEE
Q 000744 1031 LDSSTNGEVLSLIHLKG----RVLSSHSDGTIKMWDSGKR--VLRLIQEVREHTRAVTCLYVPS-SGDKLYSGSLDKTIR 1103 (1306)
Q Consensus 1031 i~~~H~~~V~sl~fspd----~LaSgs~Dg~I~vWd~~t~--~~~~i~~l~~H~~~V~sl~fsp-dg~~L~Sgs~DgtI~ 1103 (1306)
+...|.+.|++++|+|. .+++|+.-|+|-+||+.+. ...-+..+..|..+|.++.|+| +...+++.|.||+|+
T Consensus 181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR 260 (498)
T KOG4328|consen 181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIR 260 (498)
T ss_pred eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceee
Confidence 44567899999999983 8999999999999999532 1244667788999999999999 567999999999999
Q ss_pred EEEcCCCceeEEEee-cCCCCeEEEEe---CCcEEEEEcCCCeEEEEEecCCEE----EeccCCCeEEEEEeCC---EEE
Q 000744 1104 VWSIKPEEIHCLQVH-NVKEAVHELTA---NAEIACFVSPATGVKVYNWSGAIK----HINFNKHVKSLVMTGD---KLY 1172 (1306)
Q Consensus 1104 VWdi~~~~~~~i~~~-~~~~~V~sl~~---~~~~v~~s~dg~~I~i~~~~~~~~----l~~~~~~V~sl~~s~d---~L~ 1172 (1306)
.-|+++.....+... .....+.++.| +..+++...-| .+.+|+.+.... +.-|...|++|+++|- +++
T Consensus 261 ~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G-~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~la 339 (498)
T KOG4328|consen 261 LQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVG-NFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLA 339 (498)
T ss_pred eeeecchhhHHHhhcCccceeeeeccccCCCccEEEeeccc-ceEEEEeecCCccchhhhhhhcccceeecCCCCchhee
Confidence 999998653222222 22344556665 33344444445 577777773221 2237789999999964 699
Q ss_pred EEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEEC----CCCceEEEEecCC-
Q 000744 1173 CGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSI----SSKTAVGSFTTGI- 1246 (1306)
Q Consensus 1173 sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~----~t~~~l~~l~~~~- 1246 (1306)
|++.|++.+|||++.-..... +.-....|. .|.+..|+|.+.-+++.+.|+ .|+|||. .......++.|..
T Consensus 340 T~s~D~T~kIWD~R~l~~K~s--p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~-~IRv~dss~~sa~~~p~~~I~Hn~~ 416 (498)
T KOG4328|consen 340 TASLDQTAKIWDLRQLRGKAS--PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDN-EIRVFDSSCISAKDEPLGTIPHNNR 416 (498)
T ss_pred ecccCcceeeeehhhhcCCCC--cceecccccceeeeeEEcCCCCceEeeccCC-ceEEeecccccccCCccceeeccCc
Confidence 999999999999997332221 001234677 999999996554466667898 8999998 4455667777632
Q ss_pred -----CEEEEEEcCc--EEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEE-EEcCCCC
Q 000744 1247 -----DIQHLAVNSD--FIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCL-GTGVDGH 1303 (1306)
Q Consensus 1247 -----~V~sla~spd--~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~sl-afSpdg~ 1303 (1306)
......|+|+ +|++|-.-..|-|+|-+.++.+..+.. .....|.++ .|+|-+.
T Consensus 417 t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~----P~~~tI~~vn~~HP~~~ 477 (498)
T KOG4328|consen 417 TGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHD----PESSTIPSVNEFHPMRD 477 (498)
T ss_pred ccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccC----ccccccccceeeccccc
Confidence 2556689998 999999999999999999988887752 222345554 6787655
No 134
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.73 E-value=5.5e-18 Score=185.55 Aligned_cols=268 Identities=16% Similarity=0.186 Sum_probs=179.0
Q ss_pred hhHHHHhhHhhccCCCcchHHHHHHHhhcCChhhHHHHHHHHHHHHhhhccCCCCCcchhhHHhhHHHHHHhcccchhHH
Q 000744 882 CSWEKRVAFVLCNHEKGSIFKALEECLKSNSLEMAKSCLVIAAWLTHMLSTLPDTGVRGTARRSLLDEFINVLQSSRNLE 961 (1306)
Q Consensus 882 ~~w~~~~~~~L~~h~~~~~~~~l~~~L~s~~~dl~r~~ll~~aWls~~~s~~~d~~l~~~a~~~Ll~~~~~~l~~~~~~~ 961 (1306)
++..|.+....++|.+ ++.......+....+|++|......++++ +.
T Consensus 137 dD~~P~~~~~~i~h~g---------~~NRvr~~~~~~~~~~aswse~G~V~Vw~--l~---------------------- 183 (440)
T KOG0302|consen 137 DDRKPQIEMKSIPHYG---------GINRVRVSRLGNEVLCASWSENGRVQVWD--LA---------------------- 183 (440)
T ss_pred hhcccccccccccccc---------ccceeeecccCCcceeeeecccCcEEEEE--ch----------------------
Confidence 3477889999999987 33333333233556778887766655544 11
Q ss_pred HHHHHHhhhccccCCchhHHHhhhhhhhhhccccccccccccccccc------cEEEEEeCCCcEEEEeCCC-----ceE
Q 000744 962 EKILTALALKTFISDPVALEELGKYAKCIYGTLRKLKKYSAVVTDIQ------KALMNLSSVNATELWHCNE-----VTE 1030 (1306)
Q Consensus 962 ~~ll~~~~~~~~l~d~~~~~~l~~~~~~~~~~l~~l~ghs~~V~~i~------~~Lasgs~Dg~I~IWd~~~-----~~~ 1030 (1306)
.++ .++.. ++.. ..+ ....++.++.+|.+.-..+. ..|+||..-+.|++|...+ ...
T Consensus 184 ~~l-~~l~~------~~~~---~~~--s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~ 251 (440)
T KOG0302|consen 184 PHL-NALSE------PGLE---VKD--SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQR 251 (440)
T ss_pred hhh-hhhcC------cccc---ccc--cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCc
Confidence 111 11111 0000 001 12367889999976555444 5689999999999999874 334
Q ss_pred EcccCCCCEEEEEEeCC---EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 000744 1031 LDSSTNGEVLSLIHLKG---RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSI 1107 (1306)
Q Consensus 1031 i~~~H~~~V~sl~fspd---~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi 1107 (1306)
-+.+|+..|..++|||. .|+|||.||+|+|||++.+..+.-...+.|.+.|+.|.|+..-.+|++|+.||+++|||+
T Consensus 252 Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDL 331 (440)
T KOG0302|consen 252 PFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDL 331 (440)
T ss_pred cccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEh
Confidence 45679999999999983 999999999999999987743444445899999999999998889999999999999999
Q ss_pred CCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCC---EEEEEECCCcEEEEE
Q 000744 1108 KPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGD---KLYCGCSGYSIQEVD 1184 (1306)
Q Consensus 1108 ~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d---~L~sgs~Dg~I~iwD 1184 (1306)
++-+ ...+|-.+. -|..+|+||.|+|. .|++++.|..|.+||
T Consensus 332 R~~~--------~~~pVA~fk---------------------------~Hk~pItsieW~p~e~s~iaasg~D~QitiWD 376 (440)
T KOG0302|consen 332 RQFK--------SGQPVATFK---------------------------YHKAPITSIEWHPHEDSVIAASGEDNQITIWD 376 (440)
T ss_pred hhcc--------CCCcceeEE---------------------------eccCCeeEEEeccccCceEEeccCCCcEEEEE
Confidence 9843 113333332 26777777888754 689999999999999
Q ss_pred CCCCce-----------eEEecCcccccCCc---cEEEEEEeC--CcEEEEEEecCCCEEEEEEC
Q 000744 1185 LGNLTS-----------TTFYAGTKKLLGKQ---TIHSLHMHN--GLLFAGGSSVDGTAGKVFSI 1233 (1306)
Q Consensus 1185 l~~~~~-----------~~~~~~~~~l~gh~---~I~sl~~s~--~~~llas~s~Dg~~I~IWD~ 1233 (1306)
+....- +..++ +.-+.-|. .|.-+.|++ .+.++ +.+.|| +.||-.
T Consensus 377 lsvE~D~ee~~~~a~~~L~dlP-pQLLFVHqGQke~KevhWH~QiPG~lv-sTa~dG--fnVfkt 437 (440)
T KOG0302|consen 377 LSVEADEEEIDQEAAEGLQDLP-PQLLFVHQGQKEVKEVHWHRQIPGLLV-STAIDG--FNVFKT 437 (440)
T ss_pred eeccCChhhhccccccchhcCC-ceeEEEecchhHhhhheeccCCCCeEE-Eecccc--eeEEEe
Confidence 864221 00000 11122232 778889983 24444 444687 777753
No 135
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.9e-16 Score=169.83 Aligned_cols=251 Identities=14% Similarity=0.160 Sum_probs=178.9
Q ss_pred EEEEEEeC--CEEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEE
Q 000744 1039 VLSLIHLK--GRVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQ 1116 (1306)
Q Consensus 1039 V~sl~fsp--d~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~ 1116 (1306)
-.|+.|++ ++|++|..||.|.|||+.|. ..-+.+.+|..+|++++||+||++|+|+|.|..|++||+..|. +++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~--~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs--~l~ 101 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF--RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS--PLK 101 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEcccc--chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC--cee
Confidence 77999998 49999999999999999998 6778889999999999999999999999999999999999984 555
Q ss_pred eecCCCCeEEEEe---CCcEEEEEcCCCeEEEEEec-CCEEEecc------CCCeEEEEEe--CCEEEEEECCCcEEEEE
Q 000744 1117 VHNVKEAVHELTA---NAEIACFVSPATGVKVYNWS-GAIKHINF------NKHVKSLVMT--GDKLYCGCSGYSIQEVD 1184 (1306)
Q Consensus 1117 ~~~~~~~V~sl~~---~~~~v~~s~dg~~I~i~~~~-~~~~l~~~------~~~V~sl~~s--~d~L~sgs~Dg~I~iwD 1184 (1306)
.+....+|+...| ..+.+...+-...-.+..++ +...+... +....+..|. |+++++|...|.+.++|
T Consensus 102 rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~ 181 (405)
T KOG1273|consen 102 RIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYD 181 (405)
T ss_pred EEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEe
Confidence 5555688988887 22222222222212222222 33333221 1112222344 66999999999999999
Q ss_pred CCCCceeEEecCcccccCCccEEEEEEeCCcEEEEEEecCCCEEEEEECCCC-------c--eEEEEe---cCCCEEEEE
Q 000744 1185 LGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLLFAGGSSVDGTAGKVFSISSK-------T--AVGSFT---TGIDIQHLA 1252 (1306)
Q Consensus 1185 l~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~-------~--~l~~l~---~~~~V~sla 1252 (1306)
..+.+++..+.-. .-+.|..+.++..+.+++..+.|. .||.|+.+.- + ..++++ ....-.+++
T Consensus 182 a~t~e~vas~rit----s~~~IK~I~~s~~g~~liiNtsDR-vIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~cc 256 (405)
T KOG1273|consen 182 AETLECVASFRIT----SVQAIKQIIVSRKGRFLIINTSDR-VIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCC 256 (405)
T ss_pred cchheeeeeeeec----hheeeeEEEEeccCcEEEEecCCc-eEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhhee
Confidence 9999988866522 112789999997776666666787 9999998631 1 112222 123356788
Q ss_pred EcCc--EEEEEE-CCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCC
Q 000744 1253 VNSD--FIFTAT-KCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDG 1302 (1306)
Q Consensus 1253 ~spd--~Lasgs-~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg 1302 (1306)
|+.+ |++.|+ .-..++||....|..++.+.+ .......++.|+|-.
T Consensus 257 fs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG----~kgE~l~DV~whp~r 305 (405)
T KOG1273|consen 257 FSGDGEYVCAGSARAHALYIWEKSIGSLVKILHG----TKGEELLDVNWHPVR 305 (405)
T ss_pred ecCCccEEEeccccceeEEEEecCCcceeeeecC----Cchhheeecccccce
Confidence 8888 666555 446899999999999999985 222355667776643
No 136
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=1.7e-15 Score=177.13 Aligned_cols=251 Identities=18% Similarity=0.192 Sum_probs=187.8
Q ss_pred cEEEEEeCCCcEEEEeCCC---ceEEccc-CCCCEEEEEEeC-CEEEEEECCCcEEEEeCCCCccceEEEEcccCccEEE
Q 000744 1009 KALMNLSSVNATELWHCNE---VTELDSS-TNGEVLSLIHLK-GRVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTC 1083 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~---~~~i~~~-H~~~V~sl~fsp-d~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~s 1083 (1306)
+.||.+-.||.|.||++.. ...+..+ .++.|.+++|.+ ..|+|.+.+|+|.-||+.++ +....+....+.|++
T Consensus 38 ~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~l--k~~~~~d~~gg~IWs 115 (691)
T KOG2048|consen 38 NQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTL--KQKYNIDSNGGAIWS 115 (691)
T ss_pred CceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccC--ceeEEecCCCcceeE
Confidence 6799999999999999985 3333344 478899999996 49999999999999999999 788888888899999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeec-CCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeE
Q 000744 1084 LYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHN-VKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVK 1162 (1306)
Q Consensus 1084 l~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~-~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~ 1162 (1306)
++.+|.+..++.|+.||.+...+...+++..-..+. .++.|.+++ |.++|.
T Consensus 116 iai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLsls-------w~~~~~--------------------- 167 (691)
T KOG2048|consen 116 IAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLS-------WNPTGT--------------------- 167 (691)
T ss_pred EEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEE-------ecCCcc---------------------
Confidence 999999999999999998777777776433222222 224444444 333333
Q ss_pred EEEEeCCEEEEEECCCcEEEEECCCCceeEEecCcc-cccC-Cc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceE
Q 000744 1163 SLVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTK-KLLG-KQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAV 1239 (1306)
Q Consensus 1163 sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~-~l~g-h~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l 1239 (1306)
++++||.||.|++||..++..+....-.- .+.. .. -|+++.|-.++.++++ ..-| +|++||...+.++
T Consensus 168 -------~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sg-DS~G-~V~FWd~~~gTLi 238 (691)
T KOG2048|consen 168 -------KIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASG-DSAG-TVTFWDSIFGTLI 238 (691)
T ss_pred -------EEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEe-cCCc-eEEEEcccCcchh
Confidence 58999999999999999998776322110 1111 23 6888888767766654 3356 8999999999999
Q ss_pred EEEe-cCCCEEEEEEcCc--EEEEEECCCcEEEEECCCCeE--EEEEecccCCCCCCCeEEEEEcCC
Q 000744 1240 GSFT-TGIDIQHLAVNSD--FIFTATKCGTIEVWLKERVTR--VASVKANNSGGGHAKITCLGTGVD 1301 (1306)
Q Consensus 1240 ~~l~-~~~~V~sla~spd--~Lasgs~Dg~I~IWd~~tg~~--l~~l~~~~~~~~~~~V~slafSpd 1301 (1306)
..+. |...|.+++..++ ++++++.|+.|.-|...+++. +....- ..|...|.+++..++
T Consensus 239 qS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r---~~h~hdvrs~av~~~ 302 (691)
T KOG2048|consen 239 QSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRR---DLHAHDVRSMAVIEN 302 (691)
T ss_pred hhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccc---cCCcccceeeeeecc
Confidence 9988 6678999999876 999999999999988776543 121111 224456777776554
No 137
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.5e-16 Score=179.13 Aligned_cols=226 Identities=18% Similarity=0.245 Sum_probs=170.1
Q ss_pred cEEEEEeCCCcEEEEeCCCc--eEEcccCCCCEEEEEEeCC--EEEEEECCCcEEEEeCC-------CCccceEEEEccc
Q 000744 1009 KALMNLSSVNATELWHCNEV--TELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDSG-------KRVLRLIQEVREH 1077 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~--~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~-------t~~~~~i~~l~~H 1077 (1306)
.+|+.|+..|.|++|.+.++ ..+...|-..|+|+.|+.| +|+|||.||.|.+|++- +...++++.|.+|
T Consensus 94 ~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~H 173 (476)
T KOG0646|consen 94 YFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDH 173 (476)
T ss_pred eEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccC
Confidence 67777779999999999864 4556899999999999986 99999999999999972 3345789999999
Q ss_pred CccEEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEe
Q 000744 1078 TRAVTCLYVPSS--GDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHI 1155 (1306)
Q Consensus 1078 ~~~V~sl~fspd--g~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~ 1155 (1306)
+-+|+++...+. ..+++|+|.|.++|+||+..+. .+........+.+++ ..|.++
T Consensus 174 tlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~--LLlti~fp~si~av~-------lDpae~-------------- 230 (476)
T KOG0646|consen 174 TLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV--LLLTITFPSSIKAVA-------LDPAER-------------- 230 (476)
T ss_pred cceeEEEEecCCCccceEEEecCCceEEEEEeccce--eeEEEecCCcceeEE-------Eccccc--------------
Confidence 999999988764 4699999999999999999983 333333335555555 444444
Q ss_pred ccCCCeEEEEEeCCEEEEEECCCcEEEEECCCCc--ee----EEe--c--CcccccCCc---cEEEEEEeCCcEEEEEEe
Q 000744 1156 NFNKHVKSLVMTGDKLYCGCSGYSIQEVDLGNLT--ST----TFY--A--GTKKLLGKQ---TIHSLHMHNGLLFAGGSS 1222 (1306)
Q Consensus 1156 ~~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~--~~----~~~--~--~~~~l~gh~---~I~sl~~s~~~~llas~s 1222 (1306)
.+++|+.+|.|.+.++.+.. .. +.+ . ..+.+.||. +|+|++++-++.++++|+
T Consensus 231 --------------~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd 296 (476)
T KOG0646|consen 231 --------------VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGD 296 (476)
T ss_pred --------------EEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeC
Confidence 57888888888888776532 11 100 0 011244555 899999998888888999
Q ss_pred cCCCEEEEEECCCCceEEEEe-cCCCEEEEEEcC---cEEEEEECCCcEEEEEC
Q 000744 1223 VDGTAGKVFSISSKTAVGSFT-TGIDIQHLAVNS---DFIFTATKCGTIEVWLK 1272 (1306)
Q Consensus 1223 ~Dg~~I~IWD~~t~~~l~~l~-~~~~V~sla~sp---d~Lasgs~Dg~I~IWd~ 1272 (1306)
.|| .+.|||+.+.++++++. ..++|+.+.+.| ..+..-...-.+-.|++
T Consensus 297 ~dg-~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~l 349 (476)
T KOG0646|consen 297 EDG-KVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHL 349 (476)
T ss_pred CCC-CEEEEecchHHHHHHHhhhccccceeEeeccccceecccccCccCCchHh
Confidence 999 79999999999999998 577899999854 34433333444555554
No 138
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.7e-15 Score=164.01 Aligned_cols=223 Identities=14% Similarity=0.171 Sum_probs=170.3
Q ss_pred EEEEEeC--CCcEEEEeCCC--ceEEcccCCCCEEEEEEeC--CEEEEEECCCcEEEEeCCCCccceEEEEcccCccEEE
Q 000744 1010 ALMNLSS--VNATELWHCNE--VTELDSSTNGEVLSLIHLK--GRVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTC 1083 (1306)
Q Consensus 1010 ~Lasgs~--Dg~I~IWd~~~--~~~i~~~H~~~V~sl~fsp--d~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~s 1083 (1306)
.+..++. |.+||.-++.+ ..+...||...|.+|+.+| |.++|++.|++|++||++.. +|...+.-...+ .
T Consensus 70 ~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~--~cqg~l~~~~~p--i 145 (311)
T KOG1446|consen 70 TVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVK--KCQGLLNLSGRP--I 145 (311)
T ss_pred eEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCC--CCceEEecCCCc--c
Confidence 3444444 88999999875 4566789999999999998 59999999999999999977 565555433333 4
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeec----CCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCC
Q 000744 1084 LYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHN----VKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNK 1159 (1306)
Q Consensus 1084 l~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~----~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~ 1159 (1306)
++|.|+|-+++++...+.|++||++.-...+...+. .....+.+. |++||+
T Consensus 146 ~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~-------FS~dGK------------------ 200 (311)
T KOG1446|consen 146 AAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLE-------FSPDGK------------------ 200 (311)
T ss_pred eeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeE-------EcCCCC------------------
Confidence 789999999999998889999999975322222221 122333444 555555
Q ss_pred CeEEEEEeCCEEEEEECCCcEEEEECCCCceeEEecCcccccCCccEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceE
Q 000744 1160 HVKSLVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAV 1239 (1306)
Q Consensus 1160 ~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l 1239 (1306)
.++.++..+.+++.|.-+|....+|..... +..---+..|.|++.++.+|+.|| +|.+|+++++..+
T Consensus 201 ----------~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~--~~~~~~~a~ftPds~Fvl~gs~dg-~i~vw~~~tg~~v 267 (311)
T KOG1446|consen 201 ----------SILLSTNASFIYLLDAFDGTVKSTFSGYPN--AGNLPLSATFTPDSKFVLSGSDDG-TIHVWNLETGKKV 267 (311)
T ss_pred ----------EEEEEeCCCcEEEEEccCCcEeeeEeeccC--CCCcceeEEECCCCcEEEEecCCC-cEEEEEcCCCcEe
Confidence 688888899999999999998888775432 111125667889999999998777 8999999999999
Q ss_pred EEEec--CCCEEEEEEcCcEEEEEECCCcEEEEECCC
Q 000744 1240 GSFTT--GIDIQHLAVNSDFIFTATKCGTIEVWLKER 1274 (1306)
Q Consensus 1240 ~~l~~--~~~V~sla~spd~Lasgs~Dg~I~IWd~~t 1274 (1306)
..+.+ .+++.++.|+|.+..-.+.+..+-+|-...
T Consensus 268 ~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p~~ 304 (311)
T KOG1446|consen 268 AVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLPDE 304 (311)
T ss_pred eEecCCCCCCccccccCCceeeeeecCceEEEEeccc
Confidence 99986 567999999999666666677899997654
No 139
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=4e-16 Score=167.46 Aligned_cols=226 Identities=18% Similarity=0.184 Sum_probs=152.1
Q ss_pred EEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc---eeEEEeecCCCCeEEEEe---CCcEEEEEcCCCeEEE
Q 000744 1072 QEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEE---IHCLQVHNVKEAVHELTA---NAEIACFVSPATGVKV 1145 (1306)
Q Consensus 1072 ~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~---~~~i~~~~~~~~V~sl~~---~~~~v~~s~dg~~I~i 1145 (1306)
..+++|.+.|++++|+.||++|+|++.|++|++|+++.-. -++++..-.-+..+.+.| ...++++...|+.+.+
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 3568999999999999999999999999999999998643 233332212234455665 2234445556666666
Q ss_pred EEec----CCE----EEec-------cCCCeEEEEEeCC--EEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEE
Q 000744 1146 YNWS----GAI----KHIN-------FNKHVKSLVMTGD--KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIH 1207 (1306)
Q Consensus 1146 ~~~~----~~~----~l~~-------~~~~V~sl~~s~d--~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~ 1207 (1306)
|... |.. ..|+ |.-.|..+-..++ +|++++.|..|.+||++ |+.+..+.. .. .-+
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idt------nq~~n~ 232 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDT------NQSSNY 232 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecc------cccccc
Confidence 6554 111 1122 3344555555444 79999999999999999 777765432 22 445
Q ss_pred EEEEeCCcEEEEEEecCCCEEEEEEC---CCCc-----eEEEEecC-CCEEEEEEcCc--EEEEEECCCcEEEEECCC--
Q 000744 1208 SLHMHNGLLFAGGSSVDGTAGKVFSI---SSKT-----AVGSFTTG-IDIQHLAVNSD--FIFTATKCGTIEVWLKER-- 1274 (1306)
Q Consensus 1208 sl~~s~~~~llas~s~Dg~~I~IWD~---~t~~-----~l~~l~~~-~~V~sla~spd--~Lasgs~Dg~I~IWd~~t-- 1274 (1306)
..+++|++.|+++++..- -+++|.+ +.|. .+..+++| +.|..++|+++ .++|.|.||+++|||.+-
T Consensus 233 ~aavSP~GRFia~~gFTp-DVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY 311 (420)
T KOG2096|consen 233 DAAVSPDGRFIAVSGFTP-DVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRY 311 (420)
T ss_pred ceeeCCCCcEEEEecCCC-CceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceE
Confidence 577899999999887777 6999987 2232 34455654 56999999998 999999999999999752
Q ss_pred --C---eEEEEEecccCCCCCCCeEEEEEcCCCCccC
Q 000744 1275 --V---TRVASVKANNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1275 --g---~~l~~l~~~~~~~~~~~V~slafSpdg~~La 1306 (1306)
+ +.+++........+ +....++.+|+|+.||
T Consensus 312 ~~~qDpk~Lk~g~~pl~aag-~~p~RL~lsP~g~~lA 347 (420)
T KOG2096|consen 312 EAGQDPKILKEGSAPLHAAG-SEPVRLELSPSGDSLA 347 (420)
T ss_pred ecCCCchHhhcCCcchhhcC-CCceEEEeCCCCcEEE
Confidence 1 22222211000111 2334899999998875
No 140
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.71 E-value=7.2e-17 Score=181.39 Aligned_cols=217 Identities=18% Similarity=0.300 Sum_probs=179.2
Q ss_pred cEEEEEeCCCcEEEEeCCCce----EEcccCCCCEEEEEEeCC--EEEEEECCCcEEEEeCCCCccceEEEEcccCccEE
Q 000744 1009 KALMNLSSVNATELWHCNEVT----ELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVT 1082 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~~----~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~ 1082 (1306)
+.|++|+.-.++.|||+.... .-.....-.+.+++.+|| ..+++..||.|.|||+.+. ..++.|+||++.+.
T Consensus 478 rtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq--~~VrqfqGhtDGas 555 (705)
T KOG0639|consen 478 RTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ--TLVRQFQGHTDGAS 555 (705)
T ss_pred ceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc--eeeecccCCCCCce
Confidence 568999999999999987422 222333445778889997 8899999999999999998 89999999999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeE
Q 000744 1083 CLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVK 1162 (1306)
Q Consensus 1083 sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~ 1162 (1306)
||..++||..|.||+-|++||.||++++ +.++.++....|.++. .+|.|.
T Consensus 556 cIdis~dGtklWTGGlDntvRcWDlreg--rqlqqhdF~SQIfSLg-------~cP~~d--------------------- 605 (705)
T KOG0639|consen 556 CIDISKDGTKLWTGGLDNTVRCWDLREG--RQLQQHDFSSQIFSLG-------YCPTGD--------------------- 605 (705)
T ss_pred eEEecCCCceeecCCCccceeehhhhhh--hhhhhhhhhhhheecc-------cCCCcc---------------------
Confidence 9999999999999999999999999997 5556666556666665 555554
Q ss_pred EEEEeCCEEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEE
Q 000744 1163 SLVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGS 1241 (1306)
Q Consensus 1163 sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~ 1241 (1306)
+++.|-.++.+.+......+..+ +.-|. -|.++.|.+.+.++++.+.|+ .+..|...-|..+..
T Consensus 606 -------WlavGMens~vevlh~skp~kyq-------lhlheScVLSlKFa~cGkwfvStGkDn-lLnawrtPyGasiFq 670 (705)
T KOG0639|consen 606 -------WLAVGMENSNVEVLHTSKPEKYQ-------LHLHESCVLSLKFAYCGKWFVSTGKDN-LLNAWRTPYGASIFQ 670 (705)
T ss_pred -------ceeeecccCcEEEEecCCcccee-------ecccccEEEEEEecccCceeeecCchh-hhhhccCccccceee
Confidence 78899888888887765543322 34566 899999998888888888898 899999998988888
Q ss_pred EecCCCEEEEEEcCc--EEEEEECCCcEEEEEC
Q 000744 1242 FTTGIDIQHLAVNSD--FIFTATKCGTIEVWLK 1272 (1306)
Q Consensus 1242 l~~~~~V~sla~spd--~Lasgs~Dg~I~IWd~ 1272 (1306)
.+..+.|.++.++.| +|+|||.|....||.+
T Consensus 671 skE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 671 SKESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 888889999999887 9999999998888875
No 141
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.71 E-value=6.9e-16 Score=173.52 Aligned_cols=269 Identities=11% Similarity=0.123 Sum_probs=195.7
Q ss_pred CcEEEEeCCCc--eEEcccC--CCCEEEEEEeCC-EEE--EEECCCcEEEEeCCCC--ccceEEEEcccCccEEEEEEcC
Q 000744 1018 NATELWHCNEV--TELDSST--NGEVLSLIHLKG-RVL--SSHSDGTIKMWDSGKR--VLRLIQEVREHTRAVTCLYVPS 1088 (1306)
Q Consensus 1018 g~I~IWd~~~~--~~i~~~H--~~~V~sl~fspd-~La--Sgs~Dg~I~vWd~~t~--~~~~i~~l~~H~~~V~sl~fsp 1088 (1306)
.++++||+... ......| ...+.++.|+.. .|+ +.+.|..|++|.-... ....+....+. .-+|++...
T Consensus 12 d~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s 89 (673)
T KOG4378|consen 12 DKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACAS 89 (673)
T ss_pred CceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhh
Confidence 57999998742 2222222 334999999874 444 4456888999976533 22233333332 445555555
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceeEEEee-cCCCCeEEEEe--CCcEEEEEcCCCeEEEEEecCCEEE--e--ccCCCe
Q 000744 1089 SGDKLYSGSLDKTIRVWSIKPEEIHCLQVH-NVKEAVHELTA--NAEIACFVSPATGVKVYNWSGAIKH--I--NFNKHV 1161 (1306)
Q Consensus 1089 dg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~-~~~~~V~sl~~--~~~~v~~s~dg~~I~i~~~~~~~~l--~--~~~~~V 1161 (1306)
...++++|+..+.|+|||++.. .+.+.. +|...|+++.+ .+..+....+|..|.+.......+. + +....|
T Consensus 90 ~S~y~~sgG~~~~Vkiwdl~~k--l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsv 167 (673)
T KOG4378|consen 90 QSLYEISGGQSGCVKIWDLRAK--LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSV 167 (673)
T ss_pred cceeeeccCcCceeeehhhHHH--HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeE
Confidence 6689999999999999999964 333332 47799999998 3444444455555777766643332 1 234557
Q ss_pred EEEEEeCC---EEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeC-CcEEEEEEecCCCEEEEEECCCC
Q 000744 1162 KSLVMTGD---KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHN-GLLFAGGSSVDGTAGKVFSISSK 1236 (1306)
Q Consensus 1162 ~sl~~s~d---~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~-~~~llas~s~Dg~~I~IWD~~t~ 1236 (1306)
.-+.|++. .|.+++.+|.|.+||+....+...+ ...|. |...|+|+| +..++++-+.|. .|.+||..+.
T Consensus 168 Rll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~-----~~~HsAP~~gicfspsne~l~vsVG~Dk-ki~~yD~~s~ 241 (673)
T KOG4378|consen 168 RLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHA-----SEAHSAPCRGICFSPSNEALLVSVGYDK-KINIYDIRSQ 241 (673)
T ss_pred EEeecccccceeeEeeccCCeEEEEeccCCCcccch-----hhhccCCcCcceecCCccceEEEecccc-eEEEeecccc
Confidence 78899865 4889999999999999987766533 34677 999999985 456667777898 6999999999
Q ss_pred ceEEEEecCCCEEEEEEcCc--EEEEEECCCcEEEEECCC-CeEEEEEecccCCCCCCCeEEEEEcCC
Q 000744 1237 TAVGSFTTGIDIQHLAVNSD--FIFTATKCGTIEVWLKER-VTRVASVKANNSGGGHAKITCLGTGVD 1301 (1306)
Q Consensus 1237 ~~l~~l~~~~~V~sla~spd--~Lasgs~Dg~I~IWd~~t-g~~l~~l~~~~~~~~~~~V~slafSpd 1301 (1306)
.....+....+...++|.++ +|+.|+..|.|..||++. ..++.++.. |...|++++|-|.
T Consensus 242 ~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sa-----h~~sVt~vafq~s 304 (673)
T KOG4378|consen 242 ASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSA-----HDASVTRVAFQPS 304 (673)
T ss_pred cccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeee-----cccceeEEEeeec
Confidence 98999988889999999998 999999999999999985 467888876 7778999999765
No 142
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=5.3e-15 Score=158.82 Aligned_cols=248 Identities=13% Similarity=0.221 Sum_probs=183.5
Q ss_pred eEEcccCCCCEEEEEEeC--CEEEEEECCCcEEEEeCC--CCccceEEEEcccCccEEEEEEcC--CCCEEEEEeCCCcE
Q 000744 1029 TELDSSTNGEVLSLIHLK--GRVLSSHSDGTIKMWDSG--KRVLRLIQEVREHTRAVTCLYVPS--SGDKLYSGSLDKTI 1102 (1306)
Q Consensus 1029 ~~i~~~H~~~V~sl~fsp--d~LaSgs~Dg~I~vWd~~--t~~~~~i~~l~~H~~~V~sl~fsp--dg~~L~Sgs~DgtI 1102 (1306)
..+..+|..-|.|+.|.. +.++||+.|++|+|||.. ++.+.+....+.|.+.|+.|.|-+ -|+.++++|.|+++
T Consensus 6 ~pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv 85 (361)
T KOG2445|consen 6 APIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTV 85 (361)
T ss_pred cccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCce
Confidence 456678999999999986 599999999999999964 556788889999999999999976 58999999999999
Q ss_pred EEEEcCCC-------c-eeEEEeecCCCCeEEEEe-----CCcEEEEEcCCCeEEEEEecCC--EEEec-----------
Q 000744 1103 RVWSIKPE-------E-IHCLQVHNVKEAVHELTA-----NAEIACFVSPATGVKVYNWSGA--IKHIN----------- 1156 (1306)
Q Consensus 1103 ~VWdi~~~-------~-~~~i~~~~~~~~V~sl~~-----~~~~v~~s~dg~~I~i~~~~~~--~~l~~----------- 1156 (1306)
+||.-... . .++....+....|+++.| +-.+++.+.||. +++|..-.. ...|.
T Consensus 86 ~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~-lRIYEA~dp~nLs~W~Lq~Ei~~~~~p 164 (361)
T KOG2445|consen 86 SIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGI-LRIYEAPDPMNLSQWTLQHEIQNVIDP 164 (361)
T ss_pred eeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcE-EEEEecCCccccccchhhhhhhhccCC
Confidence 99976211 1 233333456789999999 335667777776 888876532 22221
Q ss_pred ---cCCCeEEEEEeCC-----EEEEEECC-----CcEEEEECCCC--ceeEEecCcccccCCc-cEEEEEEeCC----cE
Q 000744 1157 ---FNKHVKSLVMTGD-----KLYCGCSG-----YSIQEVDLGNL--TSTTFYAGTKKLLGKQ-TIHSLHMHNG----LL 1216 (1306)
Q Consensus 1157 ---~~~~V~sl~~s~d-----~L~sgs~D-----g~I~iwDl~~~--~~~~~~~~~~~l~gh~-~I~sl~~s~~----~~ 1216 (1306)
+.....|+.|++. .|+.|+.+ +.++||....+ +.... .++.+|. +|+.++|.|+ ..
T Consensus 165 p~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kv----a~L~d~~dpI~di~wAPn~Gr~y~ 240 (361)
T KOG2445|consen 165 PGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKV----AELPDHTDPIRDISWAPNIGRSYH 240 (361)
T ss_pred cccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeee----hhcCCCCCcceeeeeccccCCcee
Confidence 4566788999865 57777766 47888876653 22221 2567888 9999999864 46
Q ss_pred EEEEEecCCCEEEEEECCCC--------------------ceEEEEe-cCCCEEEEEEcCc--EEEEEECCCcEEEEECC
Q 000744 1217 FAGGSSVDGTAGKVFSISSK--------------------TAVGSFT-TGIDIQHLAVNSD--FIFTATKCGTIEVWLKE 1273 (1306)
Q Consensus 1217 llas~s~Dg~~I~IWD~~t~--------------------~~l~~l~-~~~~V~sla~spd--~Lasgs~Dg~I~IWd~~ 1273 (1306)
+++.++.|| |+||.+... +.+..+. |.+.|+.+.|+-. .|.+.|.||.|++|...
T Consensus 241 ~lAvA~kDg--v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 241 LLAVATKDG--VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred eEEEeecCc--EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 777777787 999998731 1233444 4558999999865 89999999999999754
Q ss_pred ---CCeEEEEEec
Q 000744 1274 ---RVTRVASVKA 1283 (1306)
Q Consensus 1274 ---tg~~l~~l~~ 1283 (1306)
..+|...+..
T Consensus 319 y~n~~kC~sv~~~ 331 (361)
T KOG2445|consen 319 YNNLWKCTSVLKA 331 (361)
T ss_pred hhhhheeeeEEec
Confidence 2346666653
No 143
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.70 E-value=1.3e-16 Score=172.44 Aligned_cols=241 Identities=13% Similarity=0.177 Sum_probs=176.6
Q ss_pred cEEEEEeCCCcEEEEeCCC--ceEEcccCCCCEEEEEEeCC---EEEEEECCCcEEEEeCCCCccceEEEE---cccCcc
Q 000744 1009 KALMNLSSVNATELWHCNE--VTELDSSTNGEVLSLIHLKG---RVLSSHSDGTIKMWDSGKRVLRLIQEV---REHTRA 1080 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~--~~~i~~~H~~~V~sl~fspd---~LaSgs~Dg~I~vWd~~t~~~~~i~~l---~~H~~~ 1080 (1306)
.++|.|+.-|.|+|.|+.+ ...-..+|.+.|..|.|.|+ +++++|.|.+|++||+++. .|+..| .+|.+.
T Consensus 106 p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~--~Cv~VfGG~egHrde 183 (385)
T KOG1034|consen 106 PFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD--VCVAVFGGVEGHRDE 183 (385)
T ss_pred eeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC--eEEEEecccccccCc
Confidence 5899999999999999875 45566899999999999984 9999999999999999999 888877 579999
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc----eeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEE-------EEEec
Q 000744 1081 VTCLYVPSSGDKLYSGSLDKTIRVWSIKPEE----IHCLQVHNVKEAVHELTANAEIACFVSPATGVK-------VYNWS 1149 (1306)
Q Consensus 1081 V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~----~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~-------i~~~~ 1149 (1306)
|.+++|+++|.+|+|+|.|.++++|++...+ +++... ++++++... +.++.
T Consensus 184 VLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~------------------~~~~~t~~pfpt~~~~fp~fs 245 (385)
T KOG1034|consen 184 VLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSIT------------------YSPNKTTRPFPTPKTHFPDFS 245 (385)
T ss_pred EEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcc------------------cCCCCccCcCCcccccccccc
Confidence 9999999999999999999999999999653 111111 222222100 00000
Q ss_pred CCEEEeccCCCeEEEEEeCCEEEEEECCCcEEEEECCC-CceeEEecC---cc----cccCCc-cEEEEEEe--CCcEEE
Q 000744 1150 GAIKHINFNKHVKSLVMTGDKLYCGCSGYSIQEVDLGN-LTSTTFYAG---TK----KLLGKQ-TIHSLHMH--NGLLFA 1218 (1306)
Q Consensus 1150 ~~~~l~~~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~-~~~~~~~~~---~~----~l~gh~-~I~sl~~s--~~~~ll 1218 (1306)
..-.|..+|.|+.|-++++++-|.++.|..|.... ++......+ .. .+.-.. .|+-+.|. +-+..+
T Consensus 246 ---t~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~l 322 (385)
T KOG1034|consen 246 ---TTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKML 322 (385)
T ss_pred ---ccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHH
Confidence 01127889999999999999999999999998721 111110000 00 111122 56667665 666666
Q ss_pred EEEecCCCEEEEEECCCCce--EEEEec---CCCEEEEEEcCc--EEEEEECCCcEEEEECC
Q 000744 1219 GGSSVDGTAGKVFSISSKTA--VGSFTT---GIDIQHLAVNSD--FIFTATKCGTIEVWLKE 1273 (1306)
Q Consensus 1219 as~s~Dg~~I~IWD~~t~~~--l~~l~~---~~~V~sla~spd--~Lasgs~Dg~I~IWd~~ 1273 (1306)
+.|...| .|++||+++... ..++.+ ...|...+|+.| +|+..++|++|.-||..
T Consensus 323 a~gnq~g-~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 323 ALGNQSG-KVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred hhccCCC-cEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 6665566 799999987654 234433 345999999998 88999999999999864
No 144
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.70 E-value=4e-15 Score=158.30 Aligned_cols=265 Identities=16% Similarity=0.202 Sum_probs=195.0
Q ss_pred ccccccccccc------cEEEEEeCCCcEEEEeCCCc-----------------eEEcccCCCCEEEEEEeC---CEEEE
Q 000744 998 KKYSAVVTDIQ------KALMNLSSVNATELWHCNEV-----------------TELDSSTNGEVLSLIHLK---GRVLS 1051 (1306)
Q Consensus 998 ~ghs~~V~~i~------~~Lasgs~Dg~I~IWd~~~~-----------------~~i~~~H~~~V~sl~fsp---d~LaS 1051 (1306)
+.|-+.|+.+. +++.+|+.||.|.+||++.. ..-..+|+-.|.++.|-| ..+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 34667787765 89999999999999998731 111246888999999998 39999
Q ss_pred EECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcC---CCCEEEEEeCCCcEEEEEcCCCceeEEEee-cCCCCeEEE
Q 000744 1052 SHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPS---SGDKLYSGSLDKTIRVWSIKPEEIHCLQVH-NVKEAVHEL 1127 (1306)
Q Consensus 1052 gs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fsp---dg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~-~~~~~V~sl 1127 (1306)
++.|.+++|||.+|- +....|+ -++.|++-+++| ...++++|..|-.|++.|+.+|. +.... .|.+.|.++
T Consensus 120 sSFDhtlKVWDtnTl--Q~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs--~sH~LsGHr~~vlaV 194 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTL--QEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS--FSHTLSGHRDGVLAV 194 (397)
T ss_pred ccccceEEEeecccc--eeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc--ceeeeccccCceEEE
Confidence 999999999999998 6666664 467899999998 34588899999999999999984 33333 367999999
Q ss_pred EeC---Cc-EEEEEcCCCeEEEEEecCC---EEEe---------------ccCCCeEEEEEeCC--EEEEEECCCcEEEE
Q 000744 1128 TAN---AE-IACFVSPATGVKVYNWSGA---IKHI---------------NFNKHVKSLVMTGD--KLYCGCSGYSIQEV 1183 (1306)
Q Consensus 1128 ~~~---~~-~v~~s~dg~~I~i~~~~~~---~~l~---------------~~~~~V~sl~~s~d--~L~sgs~Dg~I~iw 1183 (1306)
.|. .. ++..+.||. +++|+.... .... .|.+.|+.++|+.+ ++++.+.|..+++|
T Consensus 195 ~Wsp~~e~vLatgsaDg~-irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~w 273 (397)
T KOG4283|consen 195 EWSPSSEWVLATGSADGA-IRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVW 273 (397)
T ss_pred EeccCceeEEEecCCCce-EEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEe
Confidence 992 22 334455665 999998732 1111 26788999999855 79999999999999
Q ss_pred ECCCCceeEEecCcccccCCc---cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEecC-CCEEEEEEcCc--E
Q 000744 1184 DLGNLTSTTFYAGTKKLLGKQ---TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFTTG-IDIQHLAVNSD--F 1257 (1306)
Q Consensus 1184 Dl~~~~~~~~~~~~~~l~gh~---~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~~-~~V~sla~spd--~ 1257 (1306)
+..+|.....-.+.. ..... .+. +..-..+.++.- -.|+ ++.++++-++..+..+..| ..|.+.++-|+ .
T Consensus 274 n~~~G~ntl~~~g~~-~~n~~~~~~~~-~~~~~s~vfv~~-p~~~-~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~ 349 (397)
T KOG4283|consen 274 NMESGRNTLREFGPI-IHNQTTSFAVH-IQSMDSDVFVLF-PNDG-SLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQ 349 (397)
T ss_pred ecccCcccccccccc-cccccccceEE-EeecccceEEEE-ecCC-eEEEEEccCceEEEeeecccceeeEEeecCchhh
Confidence 999886433211111 11111 222 221133333333 2355 7999999999999999855 45888889998 8
Q ss_pred EEEEECCCcEEEEEC
Q 000744 1258 IFTATKCGTIEVWLK 1272 (1306)
Q Consensus 1258 Lasgs~Dg~I~IWd~ 1272 (1306)
.++|..|+.|..|-.
T Consensus 350 ~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 350 CFTGDMNGNIYMWSP 364 (397)
T ss_pred hhccccCCccccccc
Confidence 999999999999987
No 145
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.69 E-value=7.3e-15 Score=166.12 Aligned_cols=300 Identities=12% Similarity=0.098 Sum_probs=220.0
Q ss_pred ccccccccccccccc-----cEEEEEeCCC--------cEEEEeCCCce--EEcccCCCCEEEEEEeC-C---EEEEE--
Q 000744 994 LRKLKKYSAVVTDIQ-----KALMNLSSVN--------ATELWHCNEVT--ELDSSTNGEVLSLIHLK-G---RVLSS-- 1052 (1306)
Q Consensus 994 l~~l~ghs~~V~~i~-----~~Lasgs~Dg--------~I~IWd~~~~~--~i~~~H~~~V~sl~fsp-d---~LaSg-- 1052 (1306)
.+..-||...|.++. -.+++|-.-| .+++||..+.. .+.......|+|++|++ + .+..-
T Consensus 97 Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~ 176 (626)
T KOG2106|consen 97 QRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDD 176 (626)
T ss_pred cccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecC
Confidence 456678888888776 2567676655 48999976532 23335567799999997 2 33333
Q ss_pred ECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCc-eeEEEeec--CCCCeEEEE
Q 000744 1053 HSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSS-GDKLYSGSLDKTIRVWSIKPEE-IHCLQVHN--VKEAVHELT 1128 (1306)
Q Consensus 1053 s~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspd-g~~L~Sgs~DgtI~VWdi~~~~-~~~i~~~~--~~~~V~sl~ 1128 (1306)
+.+..+.|||+..+ ......+..+..|....|+|. .+.+++.+ -|.+..|+.+++. .+....+. .+..|.+++
T Consensus 177 s~~h~lSVWdWqk~--~~~~~vk~sne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~ 253 (626)
T KOG2106|consen 177 SNPHMLSVWDWQKK--AKLGPVKTSNEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVT 253 (626)
T ss_pred CCccccchhhchhh--hccCcceeccceEEEEEeccCCCcEEEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEE
Confidence 45677899999887 566666667788999999995 45666665 5789999999886 33333332 347899999
Q ss_pred e--CCcEEEEEcCCCeEEEEEecCCE---EEeccCCCeEEEEEeCC-EEEEEECCCcEEEEECCCCce------------
Q 000744 1129 A--NAEIACFVSPATGVKVYNWSGAI---KHINFNKHVKSLVMTGD-KLYCGCSGYSIQEVDLGNLTS------------ 1190 (1306)
Q Consensus 1129 ~--~~~~v~~s~dg~~I~i~~~~~~~---~l~~~~~~V~sl~~s~d-~L~sgs~Dg~I~iwDl~~~~~------------ 1190 (1306)
| ++..+...++|. |.+|+..+.. ....|++.|.+++.-.+ .|++|+.|..|..||-.-.+.
T Consensus 254 F~engdviTgDS~G~-i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~i 332 (626)
T KOG2106|consen 254 FLENGDVITGDSGGN-ILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPI 332 (626)
T ss_pred EcCCCCEEeecCCce-EEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCe
Confidence 9 777777777776 8999987542 23379999999999855 799999999999999321110
Q ss_pred eEEecCc----------------------ccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEecCCC
Q 000744 1191 TTFYAGT----------------------KKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFTTGID 1247 (1306)
Q Consensus 1191 ~~~~~~~----------------------~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~~~~ 1247 (1306)
..+.++. ....+|. ..+.++.+|....+++++.|+ .+++|+ ..++..+..-..+
T Consensus 333 Rtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk-~v~lW~--~~k~~wt~~~~d~ 409 (626)
T KOG2106|consen 333 RTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDK-HVRLWN--DHKLEWTKIIEDP 409 (626)
T ss_pred eEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcc-eEEEcc--CCceeEEEEecCc
Confidence 0111110 1224566 777888887777777777898 899999 6677777777888
Q ss_pred EEEEEEcCc-EEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCCCccC
Q 000744 1248 IQHLAVNSD-FIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1248 V~sla~spd-~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~~La 1306 (1306)
+.|+.|+|. .++.|+..|...+.|.++...+..-. ...+++.|+|+|||.+||
T Consensus 410 ~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~------d~~~ls~v~ysp~G~~lA 463 (626)
T KOG2106|consen 410 AECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHT------DNEQLSVVRYSPDGAFLA 463 (626)
T ss_pred eeEeeccCcceEEEeeccceEEEEecccceeEEEEe------cCCceEEEEEcCCCCEEE
Confidence 999999998 99999999999999999965554333 246899999999999886
No 146
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.69 E-value=1.4e-14 Score=166.54 Aligned_cols=242 Identities=12% Similarity=0.056 Sum_probs=169.5
Q ss_pred CEEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCceeEEEeecCCCCeE
Q 000744 1047 GRVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKL-YSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVH 1125 (1306)
Q Consensus 1047 d~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L-~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~ 1125 (1306)
+.++|++.||.|++||..++ +.+..+..|.. +.++.|+|+++.+ ++++.|+.|++||..+++. .........+.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~--~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~--~~~~~~~~~~~ 76 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATL--EVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEV--IGTLPSGPDPE 76 (300)
T ss_pred cEEEEecCCCEEEEEECCCC--ceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcE--EEeccCCCCcc
Confidence 36789999999999999988 77888876654 6789999999876 5677899999999998752 22222223345
Q ss_pred EEEe--CCcEE-EEEcCCCeEEEEEecCCEEE--eccCCCeEEEEEeCC--EEEEEECCC-cEEEEECCCCceeEEecCc
Q 000744 1126 ELTA--NAEIA-CFVSPATGVKVYNWSGAIKH--INFNKHVKSLVMTGD--KLYCGCSGY-SIQEVDLGNLTSTTFYAGT 1197 (1306)
Q Consensus 1126 sl~~--~~~~v-~~s~dg~~I~i~~~~~~~~l--~~~~~~V~sl~~s~d--~L~sgs~Dg-~I~iwDl~~~~~~~~~~~~ 1197 (1306)
.+.| ++..+ +...++..+.+|+......+ ..+...+.++.|+|+ .+++++.++ .+.+||..+++......
T Consensus 77 ~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-- 154 (300)
T TIGR03866 77 LFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-- 154 (300)
T ss_pred EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE--
Confidence 6666 33333 33344556888888754332 233455788999866 577777664 57788998877654322
Q ss_pred ccccCCccEEEEEEeCCcEEE-EEEecCCCEEEEEECCCCceEEEEecC--------CCEEEEEEcCc--E-EEEEECCC
Q 000744 1198 KKLLGKQTIHSLHMHNGLLFA-GGSSVDGTAGKVFSISSKTAVGSFTTG--------IDIQHLAVNSD--F-IFTATKCG 1265 (1306)
Q Consensus 1198 ~~l~gh~~I~sl~~s~~~~ll-as~s~Dg~~I~IWD~~t~~~l~~l~~~--------~~V~sla~spd--~-Lasgs~Dg 1265 (1306)
....+.++.|++++.++ +++..++ .|++||+.+++.+..+..+ .....++|+|+ + +++.+.++
T Consensus 155 ----~~~~~~~~~~s~dg~~l~~~~~~~~-~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~ 229 (300)
T TIGR03866 155 ----VDQRPRFAEFTADGKELWVSSEIGG-TVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPAN 229 (300)
T ss_pred ----cCCCccEEEECCCCCEEEEEcCCCC-EEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCC
Confidence 11144678898666544 5554566 8999999999887776521 12457889988 4 34445677
Q ss_pred cEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCCCccC
Q 000744 1266 TIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1266 ~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~~La 1306 (1306)
.|.+||..+++.+..+. +...+++++|+|+|++|+
T Consensus 230 ~i~v~d~~~~~~~~~~~------~~~~~~~~~~~~~g~~l~ 264 (300)
T TIGR03866 230 RVAVVDAKTYEVLDYLL------VGQRVWQLAFTPDEKYLL 264 (300)
T ss_pred eEEEEECCCCcEEEEEE------eCCCcceEEECCCCCEEE
Confidence 89999999998877665 224789999999999863
No 147
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=1.7e-15 Score=163.10 Aligned_cols=221 Identities=13% Similarity=0.196 Sum_probs=168.1
Q ss_pred ccccccccc----cEEEEEeCCCcEEEEeCCCc-eEEcccCCCCEEEEEEeC--CEEEEEECCCcEEEEeCCCCccceEE
Q 000744 1000 YSAVVTDIQ----KALMNLSSVNATELWHCNEV-TELDSSTNGEVLSLIHLK--GRVLSSHSDGTIKMWDSGKRVLRLIQ 1072 (1306)
Q Consensus 1000 hs~~V~~i~----~~Lasgs~Dg~I~IWd~~~~-~~i~~~H~~~V~sl~fsp--d~LaSgs~Dg~I~vWd~~t~~~~~i~ 1072 (1306)
|...+.++. ..+++|+.||.|+.+|+.+. ......|..+|.||.+++ +.+++||.|++|++||.... .+..
T Consensus 53 ~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~--~~~~ 130 (323)
T KOG1036|consen 53 HGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK--VVVG 130 (323)
T ss_pred cCCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccc--cccc
Confidence 455555444 57999999999999999864 445567999999999996 69999999999999999875 4555
Q ss_pred EEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCce-eEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCC
Q 000744 1073 EVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEI-HCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGA 1151 (1306)
Q Consensus 1073 ~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~-~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~ 1151 (1306)
++. ..+.|.++.. .|+.|+.|+.|..|.+||+++... ........+-
T Consensus 131 ~~d-~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lky----------------------------- 178 (323)
T KOG1036|consen 131 TFD-QGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKY----------------------------- 178 (323)
T ss_pred ccc-cCceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhcccccee-----------------------------
Confidence 553 3458999886 478899999999999999998631 1111111122
Q ss_pred EEEeccCCCeEEEEEeCC--EEEEEECCCcEEEEECCCC----ceeEEecCcccccCCc----cEEEEEEeCCcEEEEEE
Q 000744 1152 IKHINFNKHVKSLVMTGD--KLYCGCSGYSIQEVDLGNL----TSTTFYAGTKKLLGKQ----TIHSLHMHNGLLFAGGS 1221 (1306)
Q Consensus 1152 ~~l~~~~~~V~sl~~s~d--~L~sgs~Dg~I~iwDl~~~----~~~~~~~~~~~l~gh~----~I~sl~~s~~~~llas~ 1221 (1306)
.+.|+++.|+ .+++++.||.|.+=.+... +....|..|+...+.. ||++|+|+|-...+++|
T Consensus 179 --------qtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTg 250 (323)
T KOG1036|consen 179 --------QTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATG 250 (323)
T ss_pred --------EEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEec
Confidence 3444444442 5889999999888666655 4556677777555443 99999999987777788
Q ss_pred ecCCCEEEEEECCCCceEEEEecC-CCEEEEEEcCc--EEEEEEC
Q 000744 1222 SVDGTAGKVFSISSKTAVGSFTTG-IDIQHLAVNSD--FIFTATK 1263 (1306)
Q Consensus 1222 s~Dg~~I~IWD~~t~~~l~~l~~~-~~V~sla~spd--~Lasgs~ 1263 (1306)
+.|| .|.+||..+.+.+..+..- ..|.+++|+.+ .||+++.
T Consensus 251 GsDG-~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 251 GSDG-IVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred CCCc-eEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 7898 8999999999988888754 66999999988 8888763
No 148
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=2.2e-15 Score=181.33 Aligned_cols=226 Identities=14% Similarity=0.181 Sum_probs=179.1
Q ss_pred EcccCCCCEEEEEEeCC--EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 000744 1031 LDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIK 1108 (1306)
Q Consensus 1031 i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~ 1108 (1306)
....|+..-+.|+|.++ +|++++.||.|++|+..... +.-.++..|...|.+++. ++++|++|+.+++|.+|.+.
T Consensus 8 lRyaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~-e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fp 84 (933)
T KOG1274|consen 8 LRYAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDE-EEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFP 84 (933)
T ss_pred chhhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcc-cCCchhhccCceeEEEee--cccceEEeeccceEEEeeCC
Confidence 34578899999999985 99999999999999986541 222333337888888885 56699999999999999998
Q ss_pred CCcee-EEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCCEEEEEECCCcEEEEECCC
Q 000744 1109 PEEIH-CLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGDKLYCGCSGYSIQEVDLGN 1187 (1306)
Q Consensus 1109 ~~~~~-~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~ 1187 (1306)
.++.. .+..+. -++..++ ++.+|+ +++.||.|-.|++.++.+
T Consensus 85 s~~~~~iL~Rft--lp~r~~~-------v~g~g~----------------------------~iaagsdD~~vK~~~~~D 127 (933)
T KOG1274|consen 85 SGEEDTILARFT--LPIRDLA-------VSGSGK----------------------------MIAAGSDDTAVKLLNLDD 127 (933)
T ss_pred CCCccceeeeee--ccceEEE-------EecCCc----------------------------EEEeecCceeEEEEeccc
Confidence 87422 222221 2333333 344443 899999999999999998
Q ss_pred CceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEec---------CCCEEEEEEcCc-
Q 000744 1188 LTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFTT---------GIDIQHLAVNSD- 1256 (1306)
Q Consensus 1188 ~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~---------~~~V~sla~spd- 1256 (1306)
...... +.+|. +|.++.|+|.+.|+++++.|| .|+|||+.++.+..++.+ ...+..++|+|+
T Consensus 128 ~s~~~~------lrgh~apVl~l~~~p~~~fLAvss~dG-~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~ 200 (933)
T KOG1274|consen 128 SSQEKV------LRGHDAPVLQLSYDPKGNFLAVSSCDG-KVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKG 200 (933)
T ss_pred cchhee------ecccCCceeeeeEcCCCCEEEEEecCc-eEEEEEcccchhhhhcccCCccccccccceeeeeeecCCC
Confidence 877664 45777 999999999999999999999 899999999998888763 122678899999
Q ss_pred -EEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCCCccC
Q 000744 1257 -FIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1257 -~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~~La 1306 (1306)
.++..+.|+.|++|+..++.....+.. ..++..+.++.|||+|+|||
T Consensus 201 g~la~~~~d~~Vkvy~r~~we~~f~Lr~---~~~ss~~~~~~wsPnG~YiA 248 (933)
T KOG1274|consen 201 GTLAVPPVDNTVKVYSRKGWELQFKLRD---KLSSSKFSDLQWSPNGKYIA 248 (933)
T ss_pred CeEEeeccCCeEEEEccCCceeheeecc---cccccceEEEEEcCCCcEEe
Confidence 888888999999999999999999985 44456699999999999986
No 149
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.68 E-value=5e-15 Score=173.29 Aligned_cols=290 Identities=15% Similarity=0.143 Sum_probs=197.8
Q ss_pred cEEEEEeCCCcEEEEeCCCc--eEEcccCCCCEEEEEEeCC-----EEEEEECCCcEEEEeCCCCccceEEEEcccCccE
Q 000744 1009 KALMNLSSVNATELWHCNEV--TELDSSTNGEVLSLIHLKG-----RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAV 1081 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~--~~i~~~H~~~V~sl~fspd-----~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V 1081 (1306)
..++.|.. ..|.+||..+. .....+|.++|+|+.|-|. +++||+.||.|.+|.+......++.++++|...+
T Consensus 26 ~~vafGa~-~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~ 104 (764)
T KOG1063|consen 26 GLVAFGAG-PAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKEC 104 (764)
T ss_pred ceEEecCC-ceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeE
Confidence 45666665 89999998764 5556899999999999873 7999999999999999866567888998887776
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecC-CCCe--EEEEe--CCcEEE--EEcCCCeEEEEEec-----
Q 000744 1082 TCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNV-KEAV--HELTA--NAEIAC--FVSPATGVKVYNWS----- 1149 (1306)
Q Consensus 1082 ~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~-~~~V--~sl~~--~~~~v~--~s~dg~~I~i~~~~----- 1149 (1306)
.|+. .......+...|+++.+||.+..+..+...+.. .+.+ .++++ ++..+. ...+...+.++...
T Consensus 105 ~cv~--a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~ 182 (764)
T KOG1063|consen 105 VCVV--ARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFA 182 (764)
T ss_pred EEEE--eeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCccee
Confidence 6654 222223333789999999996665334333221 1111 22222 222222 23333334444443
Q ss_pred CCEEEeccCCCeEEEEEe---C-C-EEEEEECCCcEEEEECCCCce-----------------eE--------EecCccc
Q 000744 1150 GAIKHINFNKHVKSLVMT---G-D-KLYCGCSGYSIQEVDLGNLTS-----------------TT--------FYAGTKK 1199 (1306)
Q Consensus 1150 ~~~~l~~~~~~V~sl~~s---~-d-~L~sgs~Dg~I~iwDl~~~~~-----------------~~--------~~~~~~~ 1199 (1306)
....+-+|.++|.+++|. + + +++++|.|..||+|.+.-+.. .. ...-+.-
T Consensus 183 ~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eal 262 (764)
T KOG1063|consen 183 RVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEAL 262 (764)
T ss_pred EEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhh
Confidence 113455899999999998 2 3 589999999999998753220 00 0111123
Q ss_pred ccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCC--ceEEEEe-----c-CCCEEEEEEcCc--EEEEEECCCcEE
Q 000744 1200 LLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSK--TAVGSFT-----T-GIDIQHLAVNSD--FIFTATKCGTIE 1268 (1306)
Q Consensus 1200 l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~--~~l~~l~-----~-~~~V~sla~spd--~Lasgs~Dg~I~ 1268 (1306)
+.||. +|+++.|+|.+..+.++|.|. ++.+|...+. --+.... | ....++.-|+|+ .+++-+..|-.+
T Consensus 263 l~GHeDWV~sv~W~p~~~~LLSASaDk-smiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHPEGLDLLSASADK-SMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred hcCcccceEEEEEccchhhheecccCc-ceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence 45999 999999999987777777898 8999987654 3333332 2 234899999998 799999999999
Q ss_pred EEECC-CCeEEEEEecccCCCCCCCeEEEEEcCCCCcc
Q 000744 1269 VWLKE-RVTRVASVKANNSGGGHAKITCLGTGVDGHPY 1305 (1306)
Q Consensus 1269 IWd~~-tg~~l~~l~~~~~~~~~~~V~slafSpdg~~L 1305 (1306)
+|... ........-. .+|.+.|++++|+|.|.+|
T Consensus 342 lWkt~d~~~w~~~~~i---SGH~~~V~dv~W~psGefl 376 (764)
T KOG1063|consen 342 LWKTKDKTFWTQEPVI---SGHVDGVKDVDWDPSGEFL 376 (764)
T ss_pred EEeccCccceeecccc---ccccccceeeeecCCCCEE
Confidence 99932 2333333322 4577999999999999987
No 150
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.68 E-value=2.5e-15 Score=168.79 Aligned_cols=280 Identities=14% Similarity=0.131 Sum_probs=207.2
Q ss_pred cccccccccccccccc-------cEEEEEeCCCcEEEEeCC------CceEEcccCCCCEEEEEEeC---CEEEEEECCC
Q 000744 993 TLRKLKKYSAVVTDIQ-------KALMNLSSVNATELWHCN------EVTELDSSTNGEVLSLIHLK---GRVLSSHSDG 1056 (1306)
Q Consensus 993 ~l~~l~ghs~~V~~i~-------~~Lasgs~Dg~I~IWd~~------~~~~i~~~H~~~V~sl~fsp---d~LaSgs~Dg 1056 (1306)
.....+-|.+.|+++. +++|+|+.-|.|-+||+. +.......|.++|.+|.|+| +.+++.|+||
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG 257 (498)
T ss_pred ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence 3455566778887776 789999999999999994 25566789999999999998 3999999999
Q ss_pred cEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEe---CCcE
Q 000744 1057 TIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTA---NAEI 1133 (1306)
Q Consensus 1057 ~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~---~~~~ 1133 (1306)
+|+.-|++++..+.+.........+.++.|+.+...++.|..=|...+||.+++........-|+..|.++++ .+.+
T Consensus 258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~ 337 (498)
T KOG4328|consen 258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWF 337 (498)
T ss_pred eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchh
Confidence 9999999988655666665556678889999888888888888899999999875322222234579999998 3444
Q ss_pred EEEEcCCCeEEEEEecC---C----EEEeccCCCeEEEEEeCC--EEEEEECCCcEEEEECC----CCceeEEecCcccc
Q 000744 1134 ACFVSPATGVKVYNWSG---A----IKHINFNKHVKSLVMTGD--KLYCGCSGYSIQEVDLG----NLTSTTFYAGTKKL 1200 (1306)
Q Consensus 1134 v~~s~dg~~I~i~~~~~---~----~~l~~~~~~V~sl~~s~d--~L~sgs~Dg~I~iwDl~----~~~~~~~~~~~~~l 1200 (1306)
+..+..+...++||... . +....|...|.+..|+|. .|+|.+.|..|+|||.. ...+..++. |...
T Consensus 338 laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~ 416 (498)
T KOG4328|consen 338 LATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNR 416 (498)
T ss_pred eeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccCc
Confidence 44444444599999872 1 445679999999999975 69999999999999984 222222222 1111
Q ss_pred cCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEec--CCCEEEE-EEcCc---EEEEEECCCcEEEEECC
Q 000744 1201 LGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFTT--GIDIQHL-AVNSD---FIFTATKCGTIEVWLKE 1273 (1306)
Q Consensus 1201 ~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~--~~~V~sl-a~spd---~Lasgs~Dg~I~IWd~~ 1273 (1306)
.+.- ......|.|+..+++.+..-. .|-|+|-..++.+..+.. ...|.++ .|||- +++-|+..|.|+||--+
T Consensus 417 t~RwlT~fKA~W~P~~~li~vg~~~r-~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 417 TGRWLTPFKAAWDPDYNLIVVGRYPR-PIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred ccccccchhheeCCCccEEEEeccCc-ceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 1211 445568899888888887666 699999999988888764 2346554 68885 44445567899988765
Q ss_pred C
Q 000744 1274 R 1274 (1306)
Q Consensus 1274 t 1274 (1306)
.
T Consensus 496 ~ 496 (498)
T KOG4328|consen 496 K 496 (498)
T ss_pred C
Confidence 4
No 151
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=2.5e-15 Score=172.82 Aligned_cols=267 Identities=16% Similarity=0.162 Sum_probs=192.6
Q ss_pred ccccccccccccccc-----cEEEEEeCCCcEEEEeCCCceEEccc-CCCCEEEEEEeCC----EEEEEECCCcEEEEeC
Q 000744 994 LRKLKKYSAVVTDIQ-----KALMNLSSVNATELWHCNEVTELDSS-TNGEVLSLIHLKG----RVLSSHSDGTIKMWDS 1063 (1306)
Q Consensus 994 l~~l~ghs~~V~~i~-----~~Lasgs~Dg~I~IWd~~~~~~i~~~-H~~~V~sl~fspd----~LaSgs~Dg~I~vWd~ 1063 (1306)
-..++||++.|.++. .+|++|+.||+|+||.+.+..++... -.+.|.||+|+|. .|+++ .++.+.|-+.
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA-~~~~~~ivnp 471 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVA-VGECVLIVNP 471 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEE-ecCceEEeCc
Confidence 456789999999887 89999999999999999987776543 4678999999984 44443 3333544443
Q ss_pred CCCc-----------------------------------cceEEEEcccCccEEEEEEcCCCCEEEEEeCC---CcEEEE
Q 000744 1064 GKRV-----------------------------------LRLIQEVREHTRAVTCLYVPSSGDKLYSGSLD---KTIRVW 1105 (1306)
Q Consensus 1064 ~t~~-----------------------------------~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~D---gtI~VW 1105 (1306)
.-|. ..-+...-.|...|..+.|+..|.||++...| ..|.|+
T Consensus 472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliH 551 (733)
T KOG0650|consen 472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIH 551 (733)
T ss_pred cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEE
Confidence 2110 00112233588899999999999999988764 568899
Q ss_pred EcCCCceeEEEee-cCCCCeEEEEeCC-cEEEEEcCCCeEEEEEecCC---EEEeccCCCeEEEEEeC--CEEEEEECCC
Q 000744 1106 SIKPEEIHCLQVH-NVKEAVHELTANA-EIACFVSPATGVKVYNWSGA---IKHINFNKHVKSLVMTG--DKLYCGCSGY 1178 (1306)
Q Consensus 1106 di~~~~~~~i~~~-~~~~~V~sl~~~~-~~v~~s~dg~~I~i~~~~~~---~~l~~~~~~V~sl~~s~--d~L~sgs~Dg 1178 (1306)
++.... ...-+ ..++.|..+.|++ .-..+....+.|++|++... .++.....+|.++++++ +.++.|+.|+
T Consensus 552 QLSK~~--sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~ 629 (733)
T KOG0650|consen 552 QLSKRK--SQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDK 629 (733)
T ss_pred eccccc--ccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCC
Confidence 987753 22222 2457889999832 22223333445888888743 23445677899999996 7899999999
Q ss_pred cEEEEECCCCc-eeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECC------CC---ceEEEEecCC-
Q 000744 1179 SIQEVDLGNLT-STTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSIS------SK---TAVGSFTTGI- 1246 (1306)
Q Consensus 1179 ~I~iwDl~~~~-~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~------t~---~~l~~l~~~~- 1246 (1306)
.+..||+.-.. +.+ ++.-|. .+++++||+...++++++.|+ ++.||.-. .. .++..+++|.
T Consensus 630 k~~WfDldlsskPyk------~lr~H~~avr~Va~H~ryPLfas~sdDg-tv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~ 702 (733)
T KOG0650|consen 630 KMCWFDLDLSSKPYK------TLRLHEKAVRSVAFHKRYPLFASGSDDG-TVIVFHGMVYNDLLQNPLIVPLKRLRGHEK 702 (733)
T ss_pred eeEEEEcccCcchhH------HhhhhhhhhhhhhhccccceeeeecCCC-cEEEEeeeeehhhhcCCceEeeeeccCcee
Confidence 99999998653 333 455677 999999999999999998777 78887431 11 2355565543
Q ss_pred ----CEEEEEEcCc--EEEEEECCCcEEEE
Q 000744 1247 ----DIQHLAVNSD--FIFTATKCGTIEVW 1270 (1306)
Q Consensus 1247 ----~V~sla~spd--~Lasgs~Dg~I~IW 1270 (1306)
.|..+.|||. +|++++.||+|++|
T Consensus 703 ~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 703 TNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ecccceEeecccCCCceEEecCCCceEEee
Confidence 3788889998 99999999999998
No 152
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=9.7e-15 Score=156.84 Aligned_cols=257 Identities=14% Similarity=0.151 Sum_probs=179.3
Q ss_pred cEEEEEeCCCcEEEEeCCC--ceEEcccCCCCEEEEEEeCC--EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEE
Q 000744 1009 KALMNLSSVNATELWHCNE--VTELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCL 1084 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~--~~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl 1084 (1306)
.+||.|..||.|-|||+.+ ...+..+|..+|+|++||++ .|+|+|.|..|++||+..| .+++.++ ...+|+..
T Consensus 36 ~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~g--s~l~rir-f~spv~~~ 112 (405)
T KOG1273|consen 36 DYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKG--SPLKRIR-FDSPVWGA 112 (405)
T ss_pred ceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCC--CceeEEE-ccCcccee
Confidence 8999999999999999976 56778899999999999996 9999999999999999999 7888885 57899999
Q ss_pred EEcCC-CCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEec-------
Q 000744 1085 YVPSS-GDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHIN------- 1156 (1306)
Q Consensus 1085 ~fspd-g~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~------- 1156 (1306)
.|+|. .+.++..-.+..-.+-++..+...++...+. +..... ....++.+.|++|..+...|...+++
T Consensus 113 q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d-~dln~s---as~~~fdr~g~yIitGtsKGkllv~~a~t~e~v 188 (405)
T KOG1273|consen 113 QWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDD-GDLNSS---ASHGVFDRRGKYIITGTSKGKLLVYDAETLECV 188 (405)
T ss_pred eeccccCCeEEEEEecCCcEEEEecCCceeeccCCCc-cccccc---cccccccCCCCEEEEecCcceEEEEecchheee
Confidence 99994 4455555555555666666543333332221 111100 11112445555555555444443332
Q ss_pred ------cCCCeEEEEEe--CCEEEEEECCCcEEEEECCCC----ceeEEecCccccc---CCccEEEEEEeCCcEEEEEE
Q 000744 1157 ------FNKHVKSLVMT--GDKLYCGCSGYSIQEVDLGNL----TSTTFYAGTKKLL---GKQTIHSLHMHNGLLFAGGS 1221 (1306)
Q Consensus 1157 ------~~~~V~sl~~s--~d~L~sgs~Dg~I~iwDl~~~----~~~~~~~~~~~l~---gh~~I~sl~~s~~~~llas~ 1221 (1306)
....|.++.++ +..+++.+.|..||.|+++.- +-... ....+++ ...+-.+++|+.++.|++++
T Consensus 189 as~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~-e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~ 267 (405)
T KOG1273|consen 189 ASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEV-EPEHKLQDVVNKLQWKKCCFSGDGEYVCAG 267 (405)
T ss_pred eeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCc-ChhHHHHHHHhhhhhhheeecCCccEEEec
Confidence 13567777777 568999999999999998731 11010 0000111 11155678898787777777
Q ss_pred ecCCCEEEEEECCCCceEEEEecCC--CEEEEEEcCc--EEEEEECCCcEEEEECCC
Q 000744 1222 SVDGTAGKVFSISSKTAVGSFTTGI--DIQHLAVNSD--FIFTATKCGTIEVWLKER 1274 (1306)
Q Consensus 1222 s~Dg~~I~IWD~~t~~~l~~l~~~~--~V~sla~spd--~Lasgs~Dg~I~IWd~~t 1274 (1306)
+.-...++||....|.+++.+.+.. ....+.|+|- .+++- ..|.|+||....
T Consensus 268 s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 268 SARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred cccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeec
Confidence 6566689999999999999998744 4889999998 55555 789999998754
No 153
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=2.1e-14 Score=168.27 Aligned_cols=221 Identities=19% Similarity=0.264 Sum_probs=171.7
Q ss_pred CCCEEEEEEeC--CEEEEEECCCcEEEEeCCCCccceEEEEcccC-ccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCce
Q 000744 1036 NGEVLSLIHLK--GRVLSSHSDGTIKMWDSGKRVLRLIQEVREHT-RAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEI 1112 (1306)
Q Consensus 1036 ~~~V~sl~fsp--d~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~-~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~ 1112 (1306)
..+|.+++|+. +.||.+-.||.|-+|++..+ +-+...+.++. ..|.+++|+ ++..|+|.+.+|+|.-||+.+.+
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~-w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk- 101 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN-WFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLK- 101 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCC-ceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCc-
Confidence 56799999997 39999999999999999875 45566677765 579999998 56688899999999999999874
Q ss_pred eEEEeec-CCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCCEEEEEECCCcEEEEECCCCcee
Q 000744 1113 HCLQVHN-VKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGDKLYCGCSGYSIQEVDLGNLTST 1191 (1306)
Q Consensus 1113 ~~i~~~~-~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~ 1191 (1306)
....++ ..+.|++++ .+|.+. .++.||.||.+..++...++..
T Consensus 102 -~~~~~d~~gg~IWsia-------i~p~~~----------------------------~l~IgcddGvl~~~s~~p~~I~ 145 (691)
T KOG2048|consen 102 -QKYNIDSNGGAIWSIA-------INPENT----------------------------ILAIGCDDGVLYDFSIGPDKIT 145 (691)
T ss_pred -eeEEecCCCcceeEEE-------eCCccc----------------------------eEEeecCCceEEEEecCCceEE
Confidence 222222 235566655 444333 6899999998888888777665
Q ss_pred EEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEec------C-C--CEEEEEEcCc-EEEE
Q 000744 1192 TFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFTT------G-I--DIQHLAVNSD-FIFT 1260 (1306)
Q Consensus 1192 ~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~------~-~--~V~sla~spd-~Las 1260 (1306)
... .+.... .|.++.|++++.-+++|+.|| .|++||..+++.++...- . . -|+++.|-.+ .|++
T Consensus 146 ~~r----~l~rq~sRvLslsw~~~~~~i~~Gs~Dg-~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~s 220 (691)
T KOG2048|consen 146 YKR----SLMRQKSRVLSLSWNPTGTKIAGGSIDG-VIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIAS 220 (691)
T ss_pred EEe----ecccccceEEEEEecCCccEEEecccCc-eEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEE
Confidence 432 222233 899999999988777888898 899999999987773321 1 1 2888888666 9999
Q ss_pred EECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCCCcc
Q 000744 1261 ATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDGHPY 1305 (1306)
Q Consensus 1261 gs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~~L 1305 (1306)
|.+.|+|++||...|..++.+.. |...|.+++.++++.++
T Consensus 221 gDS~G~V~FWd~~~gTLiqS~~~-----h~adVl~Lav~~~~d~v 260 (691)
T KOG2048|consen 221 GDSAGTVTFWDSIFGTLIQSHSC-----HDADVLALAVADNEDRV 260 (691)
T ss_pred ecCCceEEEEcccCcchhhhhhh-----hhcceeEEEEcCCCCeE
Confidence 99999999999999999998875 77889999999987654
No 154
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=6.6e-16 Score=190.37 Aligned_cols=254 Identities=18% Similarity=0.175 Sum_probs=189.8
Q ss_pred eCCCcEEEEeCCC--c----eEE-cccCCCCEEEEEEeC------CEEEEEECCCcEEEEeCCC----CccceEEEEccc
Q 000744 1015 SSVNATELWHCNE--V----TEL-DSSTNGEVLSLIHLK------GRVLSSHSDGTIKMWDSGK----RVLRLIQEVREH 1077 (1306)
Q Consensus 1015 s~Dg~I~IWd~~~--~----~~i-~~~H~~~V~sl~fsp------d~LaSgs~Dg~I~vWd~~t----~~~~~i~~l~~H 1077 (1306)
+.+.++.||.+.. . ..+ ...-......++|.+ +.|+.|..||.|.+||... +....+.++..|
T Consensus 36 st~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h 115 (1049)
T KOG0307|consen 36 STSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKH 115 (1049)
T ss_pred ccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhccc
Confidence 4456677776542 1 111 122356788999986 2699999999999999854 334567788899
Q ss_pred CccEEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCce-eEEEeecCCCCeEEEEeCC----cEEEEEcCCCeEEEEEecCC
Q 000744 1078 TRAVTCLYVPSS-GDKLYSGSLDKTIRVWSIKPEEI-HCLQVHNVKEAVHELTANA----EIACFVSPATGVKVYNWSGA 1151 (1306)
Q Consensus 1078 ~~~V~sl~fspd-g~~L~Sgs~DgtI~VWdi~~~~~-~~i~~~~~~~~V~sl~~~~----~~v~~s~dg~~I~i~~~~~~ 1151 (1306)
++.|..+.|++. ++.|+||+.||.|.|||++..+. .........+.|.+++|+. -+...+++|+ ..+||.+.+
T Consensus 116 ~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~-~~iWDlr~~ 194 (1049)
T KOG0307|consen 116 TGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGR-AVIWDLRKK 194 (1049)
T ss_pred CCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCC-ceeccccCC
Confidence 999999999995 55999999999999999987541 1111223457899999933 3455566666 899999976
Q ss_pred EEEec---cC--CCeEEEEEeCC---EEEEEECCC---cEEEEECCCC-ceeEEecCcccccCCc-cEEEEEEe-CCcEE
Q 000744 1152 IKHIN---FN--KHVKSLVMTGD---KLYCGCSGY---SIQEVDLGNL-TSTTFYAGTKKLLGKQ-TIHSLHMH-NGLLF 1217 (1306)
Q Consensus 1152 ~~l~~---~~--~~V~sl~~s~d---~L~sgs~Dg---~I~iwDl~~~-~~~~~~~~~~~l~gh~-~I~sl~~s-~~~~l 1217 (1306)
..++. +. ..+..+.|+|+ .+++++.|. .|.+||++.- ..+++ +.+|+ .|.++.|. .|..+
T Consensus 195 ~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~------~~~H~~GilslsWc~~D~~l 268 (1049)
T KOG0307|consen 195 KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKI------LEGHQRGILSLSWCPQDPRL 268 (1049)
T ss_pred CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhh------hcccccceeeeccCCCCchh
Confidence 44433 32 34779999988 466666653 5999999864 34443 44777 99999998 44466
Q ss_pred EEEEecCCCEEEEEECCCCceEEEEe-cCCCEEEEEEcCc---EEEEEECCCcEEEEECCCCe
Q 000744 1218 AGGSSVDGTAGKVFSISSKTAVGSFT-TGIDIQHLAVNSD---FIFTATKCGTIEVWLKERVT 1276 (1306)
Q Consensus 1218 las~s~Dg~~I~IWD~~t~~~l~~l~-~~~~V~sla~spd---~Lasgs~Dg~I~IWd~~tg~ 1276 (1306)
+.+++.|+ .|.+|+.++++.+..+. .+.++..+.|+|. .+++++-||.|.|+.+.++.
T Consensus 269 llSsgkD~-~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 269 LLSSGKDN-RIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred hhcccCCC-CeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 66777898 79999999999999998 4677999999986 89999999999999987654
No 155
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.64 E-value=6e-15 Score=159.59 Aligned_cols=254 Identities=14% Similarity=0.178 Sum_probs=174.3
Q ss_pred cEEEEEeCCCcEEEEeCCCc------eEEc-ccCCCCEEEEEEeC-----C-EEEEEECCCcEEEEeCCCCccceEEEEc
Q 000744 1009 KALMNLSSVNATELWHCNEV------TELD-SSTNGEVLSLIHLK-----G-RVLSSHSDGTIKMWDSGKRVLRLIQEVR 1075 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~------~~i~-~~H~~~V~sl~fsp-----d-~LaSgs~Dg~I~vWd~~t~~~~~i~~l~ 1075 (1306)
+.+|+.+. +.+.+|..... +... ..|......++|+- + +++.|+.-|.|+|.|+.++ ++...+.
T Consensus 56 ~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~--~~~~~~~ 132 (385)
T KOG1034|consen 56 QVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSG--QCSKNYR 132 (385)
T ss_pred ceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchh--hhcccee
Confidence 67888777 67888887631 2222 24778888888873 2 8999999999999999999 8999999
Q ss_pred ccCccEEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEE
Q 000744 1076 EHTRAVTCLYVPSS-GDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKH 1154 (1306)
Q Consensus 1076 ~H~~~V~sl~fspd-g~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l 1154 (1306)
+|...|+.+.|+|+ .++++|+|.|.+||+|++++. .|+..+. +.
T Consensus 133 ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~--~Cv~VfG-----------------G~---------------- 177 (385)
T KOG1034|consen 133 GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD--VCVAVFG-----------------GV---------------- 177 (385)
T ss_pred ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC--eEEEEec-----------------cc----------------
Confidence 99999999999995 579999999999999999997 4554442 00
Q ss_pred eccCCCeEEEEEeC--CEEEEEECCCcEEEEECCCCce------eEEecCcc----------------cccCCc-cEEEE
Q 000744 1155 INFNKHVKSLVMTG--DKLYCGCSGYSIQEVDLGNLTS------TTFYAGTK----------------KLLGKQ-TIHSL 1209 (1306)
Q Consensus 1155 ~~~~~~V~sl~~s~--d~L~sgs~Dg~I~iwDl~~~~~------~~~~~~~~----------------~l~gh~-~I~sl 1209 (1306)
-+|.+.|.++.|++ ++|++++.|.+|++|++...+. ...|...+ +..-|. +|-|+
T Consensus 178 egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCv 257 (385)
T KOG1034|consen 178 EGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCV 257 (385)
T ss_pred ccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHH
Confidence 12455556666653 3899999999999999984321 11121111 111233 44444
Q ss_pred EEeCCcEEEEEEecCCCEEEEEEC-CCCc-------------eEEEEe-cCCCEEEEEEcCc----EEEEEECCCcEEEE
Q 000744 1210 HMHNGLLFAGGSSVDGTAGKVFSI-SSKT-------------AVGSFT-TGIDIQHLAVNSD----FIFTATKCGTIEVW 1270 (1306)
Q Consensus 1210 ~~s~~~~llas~s~Dg~~I~IWD~-~t~~-------------~l~~l~-~~~~V~sla~spd----~Lasgs~Dg~I~IW 1270 (1306)
.|-. .++.+-|-++ .|..|.. +-++ .+..+. ....|+-+.|.-| +|+.|...|.|++|
T Consensus 258 rw~g--d~ilSkscen-aI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vw 334 (385)
T KOG1034|consen 258 RWFG--DFILSKSCEN-AIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVW 334 (385)
T ss_pred HHHh--hheeecccCc-eEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEE
Confidence 4433 3444555577 7999987 2111 223333 2334666665544 99999999999999
Q ss_pred ECCCCeEE--EEEecccCCCCCCCeEEEEEcCCCCccC
Q 000744 1271 LKERVTRV--ASVKANNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1271 d~~tg~~l--~~l~~~~~~~~~~~V~slafSpdg~~La 1306 (1306)
|++..++. .++.- ......|...+||.||.+|+
T Consensus 335 dL~~~ep~~~ttl~~---s~~~~tVRQ~sfS~dgs~lv 369 (385)
T KOG1034|consen 335 DLDNNEPPKCTTLTH---SKSGSTVRQTSFSRDGSILV 369 (385)
T ss_pred ECCCCCCccCceEEe---ccccceeeeeeecccCcEEE
Confidence 99876552 23321 11226799999999999874
No 156
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.64 E-value=1.7e-16 Score=141.83 Aligned_cols=72 Identities=46% Similarity=0.865 Sum_probs=62.9
Q ss_pred CCCcccCcccccccCCcEEcCCCCcccHHHHHHHHHcCCCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHCC
Q 000744 340 PPKDFVCPITGQIFNDPVTLETGQTYERKAIQEWLKRGNTTCPITRQPLCSNSLPKTNYVLKRLITSWKEQYP 412 (1306)
Q Consensus 340 ~~~~~~CpIc~~l~~dPv~~~cGhtfc~~cI~~~~~~~~~~CP~c~~~l~~~~l~~~N~~L~~li~~~~~~~~ 412 (1306)
+|++|.||||+++|.|||+++|||||||.||++|+..++.+||.|++++...+++ ||..|++.|+.|+.++.
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~-pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLI-PNRALKSAIEEWCAENK 72 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSE-E-HHHHHHHHHHHHHCT
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccce-ECHHHHHHHHHHHHHcc
Confidence 5899999999999999999999999999999999999888999999999999996 99999999999999875
No 157
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=2.3e-15 Score=173.13 Aligned_cols=235 Identities=18% Similarity=0.224 Sum_probs=169.7
Q ss_pred cEEEEEeCCCcEEEEeCCC----------ceEEcccCCCCEEEEEEeCC--EEEEEECCCcEEEEeCCCCc--------c
Q 000744 1009 KALMNLSSVNATELWHCNE----------VTELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDSGKRV--------L 1068 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~----------~~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t~~--------~ 1068 (1306)
..|++++.||++++|+++. ....+.+|.++|.|++..++ .+++|+-||+|+.|++.... .
T Consensus 307 p~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~ 386 (577)
T KOG0642|consen 307 PVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPS 386 (577)
T ss_pred CeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcc
Confidence 6799999999999999931 23346799999999999985 99999999999999653110 1
Q ss_pred ceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEe
Q 000744 1069 RLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNW 1148 (1306)
Q Consensus 1069 ~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~ 1148 (1306)
....++.||++.|+.+++|+....|++++.|||++.|+........+......+...++.
T Consensus 387 vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd-------------------- 446 (577)
T KOG0642|consen 387 VLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVD-------------------- 446 (577)
T ss_pred hhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEe--------------------
Confidence 344678899999999999999999999999999999998775331111111112222222
Q ss_pred cCCEEEeccCCCeEEEEEeCC---EEEEEECCCcEEEEECCCCceeEEecCcccccCC---ccEEEEEEeCCcEEEEEEe
Q 000744 1149 SGAIKHINFNKHVKSLVMTGD---KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGK---QTIHSLHMHNGLLFAGGSS 1222 (1306)
Q Consensus 1149 ~~~~~l~~~~~~V~sl~~s~d---~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh---~~I~sl~~s~~~~llas~s 1222 (1306)
+... +.++...-+.-.++++..+..+.++... ...+. ..++-+.++|+.-+..++.
T Consensus 447 -----------------~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~-~~~~~~~~~~in~vVs~~~~~~~~~~h 508 (577)
T KOG0642|consen 447 -----------------RTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESS-ASPGPRRYPQINKVVSHPTADITFTAH 508 (577)
T ss_pred -----------------eccchhHhhhhhcccccccchhhhhhhheeecccc-CCCcccccCccceEEecCCCCeeEecc
Confidence 2211 2223223333344455555544444322 11222 1678888888888888887
Q ss_pred cCCCEEEEEECCCCceEEEEe-cCCCEEEEEEcCc--EEEEEECCCcEEEEECCCCeEEEEEe
Q 000744 1223 VDGTAGKVFSISSKTAVGSFT-TGIDIQHLAVNSD--FIFTATKCGTIEVWLKERVTRVASVK 1282 (1306)
Q Consensus 1223 ~Dg~~I~IWD~~t~~~l~~l~-~~~~V~sla~spd--~Lasgs~Dg~I~IWd~~tg~~l~~l~ 1282 (1306)
.|. .|+++|..++.++.... |...++++++.|+ ++++|+.||.+++|.+....++....
T Consensus 509 ed~-~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~ 570 (577)
T KOG0642|consen 509 EDR-SIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLEST 570 (577)
T ss_pred cCC-ceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeeccc
Confidence 777 89999999999998877 4566999999998 99999999999999998777766654
No 158
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.61 E-value=1.8e-14 Score=162.21 Aligned_cols=241 Identities=12% Similarity=0.152 Sum_probs=180.5
Q ss_pred EEEEeCCCcEEEEeCCC----ceEEcccCCCCEEEEEEeC--CEEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEE
Q 000744 1011 LMNLSSVNATELWHCNE----VTELDSSTNGEVLSLIHLK--GRVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCL 1084 (1306)
Q Consensus 1011 Lasgs~Dg~I~IWd~~~----~~~i~~~H~~~V~sl~fsp--d~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl 1084 (1306)
+++.+.|..|++|.-.. ...+.......-+|++... -++++|+..|+|+|||++.. .+++.+++|+..|+++
T Consensus 50 vas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k--l~hr~lkdh~stvt~v 127 (673)
T KOG4378|consen 50 VASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAK--LIHRFLKDHQSTVTYV 127 (673)
T ss_pred EeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHH--HHhhhccCCcceeEEE
Confidence 44556788999997543 2222222222334444333 49999999999999999976 7788899999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEe---CCcEEEEEcCCCeEEEEEecCCEEEe----cc
Q 000744 1085 YVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTA---NAEIACFVSPATGVKVYNWSGAIKHI----NF 1157 (1306)
Q Consensus 1085 ~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~---~~~~v~~s~dg~~I~i~~~~~~~~l~----~~ 1157 (1306)
.++....+|++++..|-|.|..+.++.......++....|.-+.| ...++....|...+.+|+..|..... .|
T Consensus 128 ~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~H 207 (673)
T KOG4378|consen 128 DYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAH 207 (673)
T ss_pred EecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhc
Confidence 999999999999999999999999875434444444566767777 33444445555559999999776554 38
Q ss_pred CCCeEEEEEeCC---EEEEEECCCcEEEEECCCCceeEEecCcccccCCccEEEEEEeCCcEEEEEEecCCCEEEEEECC
Q 000744 1158 NKHVKSLVMTGD---KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLLFAGGSSVDGTAGKVFSIS 1234 (1306)
Q Consensus 1158 ~~~V~sl~~s~d---~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~s~Dg~~I~IWD~~ 1234 (1306)
..+...|+|+|. .|++.+.|..|.+||++.......+.. ..|..+++|.+++.+++.|...| .|..||++
T Consensus 208 sAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y------~~Plstvaf~~~G~~L~aG~s~G-~~i~YD~R 280 (673)
T KOG4378|consen 208 SAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY------SHPLSTVAFSECGTYLCAGNSKG-ELIAYDMR 280 (673)
T ss_pred cCCcCcceecCCccceEEEecccceEEEeecccccccceeee------cCCcceeeecCCceEEEeecCCc-eEEEEecc
Confidence 889999999965 589999999999999998766553321 12889999999999999887777 79999998
Q ss_pred C-CceEEEEe-cCCCEEEEEEcCc-EEEE
Q 000744 1235 S-KTAVGSFT-TGIDIQHLAVNSD-FIFT 1260 (1306)
Q Consensus 1235 t-~~~l~~l~-~~~~V~sla~spd-~Las 1260 (1306)
. ..++..+. |...|++++|-+. .+++
T Consensus 281 ~~k~Pv~v~sah~~sVt~vafq~s~tvlt 309 (673)
T KOG4378|consen 281 STKAPVAVRSAHDASVTRVAFQPSPTVLT 309 (673)
T ss_pred cCCCCceEeeecccceeEEEeeecceeee
Confidence 7 45677776 5566999999765 4443
No 159
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.61 E-value=7.2e-16 Score=182.39 Aligned_cols=257 Identities=16% Similarity=0.194 Sum_probs=189.9
Q ss_pred ccccccccccccccccc-----cEEEEEeCCCcEEEEeCCCc--eEEcccCCCCEEEEEEeCC--EEEEEECCCcEEEEe
Q 000744 992 GTLRKLKKYSAVVTDIQ-----KALMNLSSVNATELWHCNEV--TELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWD 1062 (1306)
Q Consensus 992 ~~l~~l~ghs~~V~~i~-----~~Lasgs~Dg~I~IWd~~~~--~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd 1062 (1306)
+.++.+.||-+.|.|.. .++++|+.|..|+||..++. .....||.+.|+.++.+.+ +++++|.|..|++|.
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 44678889999998876 89999999999999998764 4445799999999999875 899999999999999
Q ss_pred CCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCe
Q 000744 1063 SGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATG 1142 (1306)
Q Consensus 1063 ~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~ 1142 (1306)
+.++ .++..+++|++.|++++|+|-. +.+.||++++||.+-. ...... .+ +. +++
T Consensus 261 l~~~--~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~---~~~y~p--rp---~~---------~~~-- 315 (1113)
T KOG0644|consen 261 LPDG--APVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLE---PRIYVP--RP---LK---------FTE-- 315 (1113)
T ss_pred cCCC--chHHHHhccccceeeeccCccc----cCCCCCceEecccccc---ccccCC--CC---CC---------ccc--
Confidence 9999 8999999999999999999954 7889999999998821 111000 00 00 000
Q ss_pred EEEEEecCCEEEeccCCCeEEEEEe--CCEEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEe-CCcEEE
Q 000744 1143 VKVYNWSGAIKHINFNKHVKSLVMT--GDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMH-NGLLFA 1218 (1306)
Q Consensus 1143 I~i~~~~~~~~l~~~~~~V~sl~~s--~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s-~~~~ll 1218 (1306)
.+.+.++.|- .+.+.||+.|+.-..|.+..... +. .+.-+.++ +-..+.
T Consensus 316 ---------------~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~------------~~~~lif~t~ssd~~~~~ 368 (1113)
T KOG0644|consen 316 ---------------KDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAW------------RSNLLIFVTRSSDLSSIV 368 (1113)
T ss_pred ---------------ccceeeeeccccccccccccCCcccccchhhHhhh------------hccceEEEeccccccccc
Confidence 0122233332 23588999999888886643211 11 11111111 222344
Q ss_pred EEEecCCCEEEEEECCCCceEEEEecCC-CEEEEEEcCc---EEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCeE
Q 000744 1219 GGSSVDGTAGKVFSISSKTAVGSFTTGI-DIQHLAVNSD---FIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKIT 1294 (1306)
Q Consensus 1219 as~s~Dg~~I~IWD~~t~~~l~~l~~~~-~V~sla~spd---~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~ 1294 (1306)
++.-.+- .+.+|++.+|+..+.+.++. .++.+.+||- +..+++.||.+.|||+-.|.+++.... ++..+.
T Consensus 369 ~~ar~~~-~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~-----gh~kl~ 442 (1113)
T KOG0644|consen 369 VTARNDH-RLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFI-----GHGKLV 442 (1113)
T ss_pred eeeeeee-EeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeec-----ccceee
Confidence 4443355 78999999999988887554 5888999885 788999999999999999999988874 367888
Q ss_pred EEEEcCCCCccC
Q 000744 1295 CLGTGVDGHPYK 1306 (1306)
Q Consensus 1295 slafSpdg~~La 1306 (1306)
..+||+||+.++
T Consensus 443 d~kFSqdgts~~ 454 (1113)
T KOG0644|consen 443 DGKFSQDGTSIA 454 (1113)
T ss_pred ccccCCCCceEe
Confidence 999999998654
No 160
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=5.6e-15 Score=161.40 Aligned_cols=271 Identities=17% Similarity=0.219 Sum_probs=217.0
Q ss_pred HHhChhhHHHhhcCCCCHHHHHHHHHHHHHHhhhcCCCcccccccccccchHHHHHHHhcCCcHHHHHHHHHHHHHHhcc
Q 000744 486 IINGLKPYVTCLCTSENLQECETAVLAIARLWKESKGDPGVHAYLLKPTIINGFAEILSASLSREVLRTSVYILSELMVA 565 (1306)
Q Consensus 486 ~~~~~~~~l~~Ll~s~~~~~~e~Av~~i~~L~~~~~~~~~~~~~i~~~~~I~~Lv~~L~~~~~~~~~e~Av~~L~~L~s~ 565 (1306)
...|...++.+|-.+++...|.+|..++.++....++. ..++.+|.+|.||++|.++ +..+|+.+.+++.++ .+
T Consensus 164 A~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnR----r~LV~aG~lpvLVsll~s~-d~dvqyycttaisnI-aV 237 (550)
T KOG4224|consen 164 ARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENR----RVLVHAGGLPVLVSLLKSG-DLDVQYYCTTAISNI-AV 237 (550)
T ss_pred hhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhh----hhhhccCCchhhhhhhccC-ChhHHHHHHHHhhhh-hh
Confidence 34455556666889999999999999999999876544 5899999999999999999 999999999999998 88
Q ss_pred Ccccccccccc-CCchHHHHHHHhcCh----HHHHHHHhccCC---CHHHHhhCCchHHHHHHhhcCCccccchhcccCc
Q 000744 566 DESVGDILTSV-DSDFDCLAALLKNGL----GEAAVLIYQLRP---AFAQLSAHEFIPSLVQLVLNKTEEFDELQFVMEP 637 (1306)
Q Consensus 566 ~~~~~~~I~~~-~~~i~~Lv~lLk~g~----~~Aa~aL~~L~~---~~~~i~~~g~i~~Lv~ll~~g~~~~~~~~~~~~~ 637 (1306)
+..+|+.++.. +..++.||+|.++|+ ..|+.||-+|+. ...+|+++|.+|.||+||++.. +|
T Consensus 238 d~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~----------~p 307 (550)
T KOG4224|consen 238 DRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPM----------GP 307 (550)
T ss_pred hHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcc----------hh
Confidence 88888888872 238999999999987 689999999988 8889999999999999997642 22
Q ss_pred hH-HHHHHHHHHHccCCCCCchhhhhHhhcCCCHHHHHhhc---CChhHHHHHHHHHHhhhhccchhHHHHHHhcccchh
Q 000744 638 KD-AAIEMLEQILMGGDKKSRSITALSLISANGIPALIKCL---DRVEVRRSIVSILLCCMHADKSCKTLIAKRIELSHV 713 (1306)
Q Consensus 638 k~-aa~~lL~~l~~~~~~~~~~~n~~~i~~~g~i~~Lv~~l---~~~~~~~~~~~~L~~~~~~~~~~r~~i~~~~~~~~l 713 (1306)
-- |.++-+.+ .+.++.|..-|+++|.+.+||++| ++.|-+.+|+..|-++......++..|-..|++|.+
T Consensus 308 lilasVaCIrn------isihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl 381 (550)
T KOG4224|consen 308 LILASVACIRN------ISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKL 381 (550)
T ss_pred HHHHHHHHHhh------cccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHH
Confidence 22 34444443 466779999999999999999999 466678889999988888788899999999999999
Q ss_pred hhhhhcCCchhHhHHHHHHHHHHhcchhhhHHHHHHHhhhcCCcchHHHHHHHhhcCCCcchhhHHHHHHhhhc
Q 000744 714 LDLFHDGNDSVRGICINFLSELVLLNRRTFSNQILQVIRDEGSFSTMHTFLVYLQMAPMEQQPATASLLLQLDL 787 (1306)
Q Consensus 714 ~~ll~~g~~~~k~~a~~~L~~L~~~~~~~~~~~~l~~i~~~g~~~~m~~ll~~l~~~~~~~~~~~A~~l~~l~~ 787 (1306)
.+|+..|.-..++..-+.+..|... +.....+-+.|.++. |..++-+.+.|-+--+|..|.+|-.
T Consensus 382 ~eL~lD~pvsvqseisac~a~Lal~------d~~k~~lld~gi~~i---LIp~t~s~s~Ev~gNaAaAL~Nlss 446 (550)
T KOG4224|consen 382 IELLLDGPVSVQSEISACIAQLALN------DNDKEALLDSGIIPI---LIPWTGSESEEVRGNAAAALINLSS 446 (550)
T ss_pred HHHHhcCChhHHHHHHHHHHHHHhc------cccHHHHhhcCCcce---eecccCccchhhcccHHHHHHhhhh
Confidence 9999999988888776666666322 223344556676666 6666666666666666666666654
No 161
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.61 E-value=2e-14 Score=165.35 Aligned_cols=117 Identities=22% Similarity=0.287 Sum_probs=98.9
Q ss_pred ccccccccccccccccc------cEEEEEeCCCcEEEEeCCC-------ceEEcccC-CCCEEEEEEeC--CEEEEEECC
Q 000744 992 GTLRKLKKYSAVVTDIQ------KALMNLSSVNATELWHCNE-------VTELDSST-NGEVLSLIHLK--GRVLSSHSD 1055 (1306)
Q Consensus 992 ~~l~~l~ghs~~V~~i~------~~Lasgs~Dg~I~IWd~~~-------~~~i~~~H-~~~V~sl~fsp--d~LaSgs~D 1055 (1306)
+.+..+.+|.+.|.++. .+|||||.|..|+||.+.. ...+..+| +-.|.|+.|+| |-|...+.-
T Consensus 70 r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~ 149 (1012)
T KOG1445|consen 70 RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAH 149 (1012)
T ss_pred cccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccC
Confidence 45677889999998876 7899999999999999862 12233444 55688999998 455555567
Q ss_pred CcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 000744 1056 GTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPE 1110 (1306)
Q Consensus 1056 g~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~ 1110 (1306)
|+++|||+.++ +.+..+.+|.+.|.+..|+.||..+++.+.|+.|+|||.+..
T Consensus 150 g~v~i~D~stq--k~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~ 202 (1012)
T KOG1445|consen 150 GSVYITDISTQ--KTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRAS 202 (1012)
T ss_pred ceEEEEEcccC--ceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccC
Confidence 99999999999 889999999999999999999999999999999999999864
No 162
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.60 E-value=6.5e-14 Score=154.68 Aligned_cols=207 Identities=14% Similarity=0.189 Sum_probs=155.6
Q ss_pred ceEEcccCCCCEEEEEEeC--C-EEEEEECCCcEEEEeCCCCc-----cceEEEEcccCccEEEEEEcCC-CCEEEEEeC
Q 000744 1028 VTELDSSTNGEVLSLIHLK--G-RVLSSHSDGTIKMWDSGKRV-----LRLIQEVREHTRAVTCLYVPSS-GDKLYSGSL 1098 (1306)
Q Consensus 1028 ~~~i~~~H~~~V~sl~fsp--d-~LaSgs~Dg~I~vWd~~t~~-----~~~i~~l~~H~~~V~sl~fspd-g~~L~Sgs~ 1098 (1306)
......+|+++|..++|+| | .|+|||.|.+|.||++-.+. .+++..+.+|...|--|.|+|. .+.|+|+|.
T Consensus 73 ~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~ 152 (472)
T KOG0303|consen 73 SYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGS 152 (472)
T ss_pred CCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccC
Confidence 3445689999999999998 3 99999999999999985431 2567788999999999999994 578999999
Q ss_pred CCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCCEEEEEECCC
Q 000744 1099 DKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGDKLYCGCSGY 1178 (1306)
Q Consensus 1099 DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~Dg 1178 (1306)
|.+|.+||+.+++ .+...+|.+.|+++. |+.||+ .+++++.|.
T Consensus 153 Dn~v~iWnv~tge--ali~l~hpd~i~S~s-------fn~dGs----------------------------~l~TtckDK 195 (472)
T KOG0303|consen 153 DNTVSIWNVGTGE--ALITLDHPDMVYSMS-------FNRDGS----------------------------LLCTTCKDK 195 (472)
T ss_pred CceEEEEeccCCc--eeeecCCCCeEEEEE-------eccCCc----------------------------eeeeecccc
Confidence 9999999999984 333344667777776 666665 799999999
Q ss_pred cEEEEECCCCceeEEecCcccccCCccEEEEEEeCCcEEEEEE-e--cCCCEEEEEECCCCc---eEEEEecCCCEEEEE
Q 000744 1179 SIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLLFAGGS-S--VDGTAGKVFSISSKT---AVGSFTTGIDIQHLA 1252 (1306)
Q Consensus 1179 ~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~-s--~Dg~~I~IWD~~t~~---~l~~l~~~~~V~sla 1252 (1306)
.|+|||.++++.+..-.+|. |+.+.+.+-..++. ++.+| + .+. .+-+||..+-+ ....+...+.|.==-
T Consensus 196 kvRv~dpr~~~~v~e~~~he---G~k~~Raifl~~g~-i~tTGfsr~seR-q~aLwdp~nl~eP~~~~elDtSnGvl~PF 270 (472)
T KOG0303|consen 196 KVRVIDPRRGTVVSEGVAHE---GAKPARAIFLASGK-IFTTGFSRMSER-QIALWDPNNLEEPIALQELDTSNGVLLPF 270 (472)
T ss_pred eeEEEcCCCCcEeeeccccc---CCCcceeEEeccCc-eeeecccccccc-ceeccCcccccCcceeEEeccCCceEEee
Confidence 99999999999887543221 33355555555555 44443 2 133 79999986643 345555666676666
Q ss_pred EcCc---EEEEEECCCcEEEEECCCCe
Q 000744 1253 VNSD---FIFTATKCGTIEVWLKERVT 1276 (1306)
Q Consensus 1253 ~spd---~Lasgs~Dg~I~IWd~~tg~ 1276 (1306)
|++| ..++|-.|+.|+.|.+....
T Consensus 271 yD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 271 YDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ecCCCCEEEEEecCCcceEEEEecCCC
Confidence 7887 44566689999999998755
No 163
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=5.7e-14 Score=157.98 Aligned_cols=269 Identities=13% Similarity=0.126 Sum_probs=194.4
Q ss_pred ccccccc-----cEEEEEeCCCcEEEEeCCCc----eEEcccCCCCEEEEEEeCC---EEEEEECCCcEEEEeCCCCccc
Q 000744 1002 AVVTDIQ-----KALMNLSSVNATELWHCNEV----TELDSSTNGEVLSLIHLKG---RVLSSHSDGTIKMWDSGKRVLR 1069 (1306)
Q Consensus 1002 ~~V~~i~-----~~Lasgs~Dg~I~IWd~~~~----~~i~~~H~~~V~sl~fspd---~LaSgs~Dg~I~vWd~~t~~~~ 1069 (1306)
+.|+++. .+|.+|+.||+++||.+... .+-..-...+|.+..|.|+ .+++++.-...+.||+.+.+..
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~ 293 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVT 293 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccc
Confidence 3445554 88999999999999998742 1222234788999999985 8999999999999999998666
Q ss_pred eEEEEcccC-ccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEe---CCcEEEEEcCCCeEEE
Q 000744 1070 LIQEVREHT-RAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTA---NAEIACFVSPATGVKV 1145 (1306)
Q Consensus 1070 ~i~~l~~H~-~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~---~~~~v~~s~dg~~I~i 1145 (1306)
.+....++. ..+.....++++++|+..|..|.|.+....+++ .+..+...+.|.++.| +..++..+.+| .|.+
T Consensus 294 k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~e--li~s~KieG~v~~~~fsSdsk~l~~~~~~G-eV~v 370 (514)
T KOG2055|consen 294 KLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKE--LITSFKIEGVVSDFTFSSDSKELLASGGTG-EVYV 370 (514)
T ss_pred cccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhh--hhheeeeccEEeeEEEecCCcEEEEEcCCc-eEEE
Confidence 666666765 356778889999999999999999999999874 4455555688999998 33344444555 4778
Q ss_pred EEecCCEE--EeccCCCe--EEEE--EeCCEEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeCCcEEE
Q 000744 1146 YNWSGAIK--HINFNKHV--KSLV--MTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFA 1218 (1306)
Q Consensus 1146 ~~~~~~~~--l~~~~~~V--~sl~--~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~ll 1218 (1306)
|+.+.... .|...+.| ++++ .++.++++|+..|.|.|||..+...-..-.+...+..-. .|+++.|+++..++
T Consensus 371 ~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiL 450 (514)
T KOG2055|consen 371 WNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQIL 450 (514)
T ss_pred EecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhh
Confidence 88775432 23334444 3344 346699999999999999976521111000111222223 89999999777666
Q ss_pred EEEec-CCCEEEEEECCCCceEEEEecC----CCEEEEEEcCc--EEEEEECCCcEEEEECC
Q 000744 1219 GGSSV-DGTAGKVFSISSKTAVGSFTTG----IDIQHLAVNSD--FIFTATKCGTIEVWLKE 1273 (1306)
Q Consensus 1219 as~s~-Dg~~I~IWD~~t~~~l~~l~~~----~~V~sla~spd--~Lasgs~Dg~I~IWd~~ 1273 (1306)
+-+|. ..+.+|+-.+.+......|+.. +.|+||+|+|. +++.|..+|.+.+|.+.
T Consensus 451 AiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 451 AIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 54432 2338999998888777777632 23999999997 99999999999999874
No 164
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.59 E-value=5.1e-14 Score=155.49 Aligned_cols=239 Identities=16% Similarity=0.170 Sum_probs=159.3
Q ss_pred ccccccccccccccccc------cEEEEEeCCCcEEEEeCCC---------ceEEcccCCCCEEEEEEeC---CEEEEEE
Q 000744 992 GTLRKLKKYSAVVTDIQ------KALMNLSSVNATELWHCNE---------VTELDSSTNGEVLSLIHLK---GRVLSSH 1053 (1306)
Q Consensus 992 ~~l~~l~ghs~~V~~i~------~~Lasgs~Dg~I~IWd~~~---------~~~i~~~H~~~V~sl~fsp---d~LaSgs 1053 (1306)
...-.+.||.+.|-++. ..+||||.|.+|.||++.. ....+.+|...|--|.|+| +.|+|++
T Consensus 72 ~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag 151 (472)
T KOG0303|consen 72 ASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG 151 (472)
T ss_pred CCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc
Confidence 34456789999998776 8899999999999999853 3445689999999999998 5999999
Q ss_pred CCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEE-eecCCCCeEEEEeCCc
Q 000744 1054 SDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQ-VHNVKEAVHELTANAE 1132 (1306)
Q Consensus 1054 ~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~-~~~~~~~V~sl~~~~~ 1132 (1306)
.|++|.+||+.+| +.+.++. |.+.|+++.|+.||.+|++.+.|+.|||||.++++..... .+....+...
T Consensus 152 ~Dn~v~iWnv~tg--eali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Ra------ 222 (472)
T KOG0303|consen 152 SDNTVSIWNVGTG--EALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARA------ 222 (472)
T ss_pred CCceEEEEeccCC--ceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCccee------
Confidence 9999999999999 7777776 9999999999999999999999999999999998532222 1221112222
Q ss_pred EEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCCEEEEE---ECCCcEEEEECCCCceeEEecCcccccCCccEEEE
Q 000744 1133 IACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGDKLYCG---CSGYSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSL 1209 (1306)
Q Consensus 1133 ~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sg---s~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl 1209 (1306)
.|..+|. .+.|| ..+..+-+||..+-.....+. .+...+.|.-=
T Consensus 223 --ifl~~g~----------------------------i~tTGfsr~seRq~aLwdp~nl~eP~~~~---elDtSnGvl~P 269 (472)
T KOG0303|consen 223 --IFLASGK----------------------------IFTTGFSRMSERQIALWDPNNLEEPIALQ---ELDTSNGVLLP 269 (472)
T ss_pred --EEeccCc----------------------------eeeeccccccccceeccCcccccCcceeE---EeccCCceEEe
Confidence 2333333 12222 347788999887644322221 12222233333
Q ss_pred EEeCC-cEEEEEEecCCCEEEEEECCCCce----EEEEecCCCEEEEEEcCcEEEEEECCCcEEEEECC
Q 000744 1210 HMHNG-LLFAGGSSVDGTAGKVFSISSKTA----VGSFTTGIDIQHLAVNSDFIFTATKCGTIEVWLKE 1273 (1306)
Q Consensus 1210 ~~s~~-~~llas~s~Dg~~I~IWD~~t~~~----l~~l~~~~~V~sla~spd~Lasgs~Dg~I~IWd~~ 1273 (1306)
-|.+| +.+...|-.|+ .||.|.+.+..+ +.+|+...+-..+.|-|..-+-.+..-..++|.+.
T Consensus 270 FyD~dt~ivYl~GKGD~-~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPKRGl~Vs~cEI~rfyKl~ 337 (472)
T KOG0303|consen 270 FYDPDTSIVYLCGKGDS-SIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPKRGLDVSKCEIARFYKLH 337 (472)
T ss_pred eecCCCCEEEEEecCCc-ceEEEEecCCCceeEEecccccCCccccccccccccccchHHHHHHHHHhh
Confidence 34444 33333333477 799999987652 34444444556666666533333333333444443
No 165
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=5e-13 Score=139.28 Aligned_cols=234 Identities=12% Similarity=0.157 Sum_probs=171.6
Q ss_pred cccccEEEEEeCCCcEEEEeCCC------------ceEEcccCCCCEEEEEEeCCEEEEEECCCcEEEEeCCCCc----c
Q 000744 1005 TDIQKALMNLSSVNATELWHCNE------------VTELDSSTNGEVLSLIHLKGRVLSSHSDGTIKMWDSGKRV----L 1068 (1306)
Q Consensus 1005 ~~i~~~Lasgs~Dg~I~IWd~~~------------~~~i~~~H~~~V~sl~fspd~LaSgs~Dg~I~vWd~~t~~----~ 1068 (1306)
+...++|+.|+.+|+|.+..++. ..-...+|.++|+.++|+.++|++|+. |.|+-|.+.... .
T Consensus 19 sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E~~es~~~ 97 (325)
T KOG0649|consen 19 SPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNEEEESLAT 97 (325)
T ss_pred CCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccC-ceEEEeeehhhhhhccc
Confidence 34448899999999999998852 122237899999999999999999886 999999885431 0
Q ss_pred ceEEE--EcccC-----ccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEee-cCCCCeEEEEeCCcEEEE-EcC
Q 000744 1069 RLIQE--VREHT-----RAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVH-NVKEAVHELTANAEIACF-VSP 1139 (1306)
Q Consensus 1069 ~~i~~--l~~H~-----~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~-~~~~~V~sl~~~~~~v~~-s~d 1139 (1306)
+.+.. ...|. ..|+++...|..+-++.++.|+.+.-||+++|+. ...+ .|.+.|.++. . ..
T Consensus 98 K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i--~r~~rGHtDYvH~vv-------~R~~- 167 (325)
T KOG0649|consen 98 KRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRI--QREYRGHTDYVHSVV-------GRNA- 167 (325)
T ss_pred hhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEE--EEEEcCCcceeeeee-------eccc-
Confidence 11111 11232 3588999999877777778999999999999852 2222 2445555554 1 11
Q ss_pred CCeEEEEEecCCEEEeccCCCeEEEEEeCCEEEEEECCCcEEEEECCCCceeEEecCcc---cccCCc--cEEEEEEeCC
Q 000744 1140 ATGVKVYNWSGAIKHINFNKHVKSLVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTK---KLLGKQ--TIHSLHMHNG 1214 (1306)
Q Consensus 1140 g~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~---~l~gh~--~I~sl~~s~~ 1214 (1306)
...+++|+.||++++||.++++.+.++...+ .+..|. +|.+++.+.+
T Consensus 168 ----------------------------~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed 219 (325)
T KOG0649|consen 168 ----------------------------NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED 219 (325)
T ss_pred ----------------------------CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc
Confidence 2369999999999999999999988765422 233344 7888888777
Q ss_pred cEEEEEEecCCCEEEEEECCCCceEEEEecCCCEEEEEEcCcEEEEEECCCcEEEEECCCCeEEEEEe
Q 000744 1215 LLFAGGSSVDGTAGKVFSISSKTAVGSFTTGIDIQHLAVNSDFIFTATKCGTIEVWLKERVTRVASVK 1282 (1306)
Q Consensus 1215 ~~llas~s~Dg~~I~IWD~~t~~~l~~l~~~~~V~sla~spd~Lasgs~Dg~I~IWd~~tg~~l~~l~ 1282 (1306)
..+..+| ..+.+|.+++.++..+|+-...|..+.|..|.+++++..+.|.-|.+. |..-...+
T Consensus 220 WlvCGgG----p~lslwhLrsse~t~vfpipa~v~~v~F~~d~vl~~G~g~~v~~~~l~-Gvl~a~ip 282 (325)
T KOG0649|consen 220 WLVCGGG----PKLSLWHLRSSESTCVFPIPARVHLVDFVDDCVLIGGEGNHVQSYTLN-GVLQANIP 282 (325)
T ss_pred eEEecCC----CceeEEeccCCCceEEEecccceeEeeeecceEEEeccccceeeeeec-cEEEEecc
Confidence 6655443 469999999999999999888899999999989999988899999875 43333333
No 166
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.57 E-value=1.2e-13 Score=159.78 Aligned_cols=249 Identities=13% Similarity=0.182 Sum_probs=173.6
Q ss_pred CEEEEEEeCC--EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEE
Q 000744 1038 EVLSLIHLKG--RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCL 1115 (1306)
Q Consensus 1038 ~V~sl~fspd--~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i 1115 (1306)
.|..++|-|| .|+.+. +..+.+||.+.| ..++++++|++.|+|++|+.||+.++||+.|+.|.+|+.+- +-+
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG--~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl---EG~ 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDG--TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL---EGI 87 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCc--ccccccccccceEEEEEEccCCceeccCCCceeEEEecccc---cce
Confidence 7889999997 444433 357999999999 89999999999999999999999999999999999998664 344
Q ss_pred EeecCCCCeEEEEeCC---cEEEEEcCCCeEEEEEecC-CEEEeccCCCeEEEEEeCC--EEEEEECCCcEEEEECCCCc
Q 000744 1116 QVHNVKEAVHELTANA---EIACFVSPATGVKVYNWSG-AIKHINFNKHVKSLVMTGD--KLYCGCSGYSIQEVDLGNLT 1189 (1306)
Q Consensus 1116 ~~~~~~~~V~sl~~~~---~~v~~s~dg~~I~i~~~~~-~~~l~~~~~~V~sl~~s~d--~L~sgs~Dg~I~iwDl~~~~ 1189 (1306)
-.+.|.+.|.|+.|++ .+++++-+. ...|+.+. .+.-......|.+.+|..| +++.|-.||+|.+-+-....
T Consensus 88 LkYSH~D~IQCMsFNP~~h~LasCsLsd--FglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEe 165 (1081)
T KOG1538|consen 88 LKYSHNDAIQCMSFNPITHQLASCSLSD--FGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEE 165 (1081)
T ss_pred eeeccCCeeeEeecCchHHHhhhcchhh--ccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCc
Confidence 5567889999999832 333332222 22343331 1222234566788888854 79999999999998654433
Q ss_pred eeEEecCcccccCCc-cEEEEEEeCCc-----EEEEEEecCCCEEEEEECCCCceEEE-EecCCCEEEEEEcCc--EEEE
Q 000744 1190 STTFYAGTKKLLGKQ-TIHSLHMHNGL-----LFAGGSSVDGTAGKVFSISSKTAVGS-FTTGIDIQHLAVNSD--FIFT 1260 (1306)
Q Consensus 1190 ~~~~~~~~~~l~gh~-~I~sl~~s~~~-----~llas~s~Dg~~I~IWD~~t~~~l~~-l~~~~~V~sla~spd--~Las 1260 (1306)
.+.+-. -.|.+ +|++++|+|.. .+++...+.. ++.++.+. |+.+.. -.-+....|+.+.++ ++..
T Consensus 166 k~~I~R----pgg~Nspiwsi~~~p~sg~G~~di~aV~DW~q-TLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~Li 239 (1081)
T KOG1538|consen 166 KVKIER----PGGSNSPIWSICWNPSSGEGRNDILAVADWGQ-TLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILL 239 (1081)
T ss_pred ceEEeC----CCCCCCCceEEEecCCCCCCccceEEEEeccc-eeEEEEec-ceeecccccCCCCchhheeccCCcEEEE
Confidence 333221 12344 99999998643 2333333333 45555443 333321 112445678888777 9999
Q ss_pred EECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCCCccC
Q 000744 1261 ATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1261 gs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~~La 1306 (1306)
|+.|+.+++|..+ |-.+.++- ....+||.++..|+|++.+
T Consensus 240 GGsdk~L~~fTR~-GvrLGTvg-----~~D~WIWtV~~~PNsQ~v~ 279 (1081)
T KOG1538|consen 240 GGSDKQLSLFTRD-GVRLGTVG-----EQDSWIWTVQAKPNSQYVV 279 (1081)
T ss_pred ccCCCceEEEeec-CeEEeecc-----ccceeEEEEEEccCCceEE
Confidence 9999999999864 66777764 3557999999999998753
No 167
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=1.5e-13 Score=158.32 Aligned_cols=264 Identities=13% Similarity=0.089 Sum_probs=177.4
Q ss_pred eEEcccCCCCEEEEEEeCC--EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCC--EEEEEeCCCcEEE
Q 000744 1029 TELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGD--KLYSGSLDKTIRV 1104 (1306)
Q Consensus 1029 ~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~--~L~Sgs~DgtI~V 1104 (1306)
..+..+|++.|.||+..|. +|++|+.||+|+||.+.|| .|+.++. -.+.|.||+|+|.+. .|+.+- ++.+.|
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg--Rcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~-~~~~~i 468 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATG--RCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAV-GECVLI 468 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecc--eEEEEEe-ecceeEEEEecCCCCceeEEEEe-cCceEE
Confidence 3456799999999999874 9999999999999999999 8999885 456899999999654 333333 333433
Q ss_pred EEcCCC---------------------------------c---eeEEEeecCCCCeEEEEe---CCcEEEEEcCC--CeE
Q 000744 1105 WSIKPE---------------------------------E---IHCLQVHNVKEAVHELTA---NAEIACFVSPA--TGV 1143 (1306)
Q Consensus 1105 Wdi~~~---------------------------------~---~~~i~~~~~~~~V~sl~~---~~~~v~~s~dg--~~I 1143 (1306)
-+..-| + ...-..+.|...|..+.| ++.++.+.+++ +.+
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV 548 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence 332211 0 011122345577778876 44455555544 334
Q ss_pred EEEEecCCEEE---eccCCCeEEEEEeCC--EEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeCCcEE
Q 000744 1144 KVYNWSGAIKH---INFNKHVKSLVMTGD--KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLF 1217 (1306)
Q Consensus 1144 ~i~~~~~~~~l---~~~~~~V~sl~~s~d--~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~l 1217 (1306)
.+......... ....+.|.++.|+|. ++++++ -..|++||+..+..++. +.... +|.+++++|+|--
T Consensus 549 liHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKk------L~tg~kwiS~msihp~GDn 621 (733)
T KOG0650|consen 549 LIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKK------LLTGSKWISSMSIHPNGDN 621 (733)
T ss_pred EEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHH------HhcCCeeeeeeeecCCCCe
Confidence 45544422221 134678999999987 455554 47799999998776653 32333 9999999975544
Q ss_pred EEEEecCCCEEEEEECCCC-ceEEEEecC-CCEEEEEEcCc--EEEEEECCCcEEEEECC------CC---eEEEEEecc
Q 000744 1218 AGGSSVDGTAGKVFSISSK-TAVGSFTTG-IDIQHLAVNSD--FIFTATKCGTIEVWLKE------RV---TRVASVKAN 1284 (1306)
Q Consensus 1218 las~s~Dg~~I~IWD~~t~-~~l~~l~~~-~~V~sla~spd--~Lasgs~Dg~I~IWd~~------tg---~~l~~l~~~ 1284 (1306)
++.++.|+ .+..||+.-. +..+++.+| ..+++|+||+. ++++|+.||++.|+.-. .. -+++.+.+|
T Consensus 622 li~gs~d~-k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH 700 (733)
T KOG0650|consen 622 LILGSYDK-KMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGH 700 (733)
T ss_pred EEEecCCC-eeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCc
Confidence 44555788 6999999654 566677654 56999999998 99999999999998532 11 245556541
Q ss_pred cCCCCCCCeEEEEEcCCCCcc
Q 000744 1285 NSGGGHAKITCLGTGVDGHPY 1305 (1306)
Q Consensus 1285 ~~~~~~~~V~slafSpdg~~L 1305 (1306)
... ....|.++.|+|..-||
T Consensus 701 ~~~-~~~gVLd~~wHP~qpWL 720 (733)
T KOG0650|consen 701 EKT-NDLGVLDTIWHPRQPWL 720 (733)
T ss_pred eee-cccceEeecccCCCceE
Confidence 110 11458889999987665
No 168
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=2.3e-14 Score=165.07 Aligned_cols=246 Identities=18% Similarity=0.238 Sum_probs=173.9
Q ss_pred EEEeCCCceEEcccCCCCEEEEEEeCC--EEEEEECCCcEEEEeCC------CCccceEEEEcccCccEEEEEEcCCCCE
Q 000744 1021 ELWHCNEVTELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDSG------KRVLRLIQEVREHTRAVTCLYVPSSGDK 1092 (1306)
Q Consensus 1021 ~IWd~~~~~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~------t~~~~~i~~l~~H~~~V~sl~fspdg~~ 1092 (1306)
+-|+++- ....|...|..+.|.+- .|++++.||++++|+++ ....+++.+|++|.++|.|+++.+++..
T Consensus 282 k~w~ik~---tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~ 358 (577)
T KOG0642|consen 282 KKWNIKF---TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEH 358 (577)
T ss_pred eecceee---eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceE
Confidence 3355443 45678888999999883 99999999999999993 2335789999999999999999999999
Q ss_pred EEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEe--CCE
Q 000744 1093 LYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMT--GDK 1170 (1306)
Q Consensus 1093 L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s--~d~ 1170 (1306)
+++||.||+|+.|++.... .....++ ... ..-.+.+|.+.|+.++++ ++.
T Consensus 359 ~ysgg~Dg~I~~w~~p~n~-dp~ds~d----p~v-----------------------l~~~l~Ghtdavw~l~~s~~~~~ 410 (577)
T KOG0642|consen 359 CYSGGIDGTIRCWNLPPNQ-DPDDSYD----PSV-----------------------LSGTLLGHTDAVWLLALSSTKDR 410 (577)
T ss_pred EEeeccCceeeeeccCCCC-CcccccC----cch-----------------------hccceeccccceeeeeecccccc
Confidence 9999999999999887431 0000000 000 112345688899999998 457
Q ss_pred EEEEECCCcEEEEECCCCceeEEecCcccccCCccEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEec------
Q 000744 1171 LYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFTT------ 1244 (1306)
Q Consensus 1171 L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~------ 1244 (1306)
|++++.||+++.|+...... .+|.... .|..-.++.+..........+..-+.--+++....+.+..+..
T Consensus 411 Llscs~DgTvr~w~~~~~~~-~~f~~~~---e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~ 486 (577)
T KOG0642|consen 411 LLSCSSDGTVRLWEPTEESP-CTFGEPK---EHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGP 486 (577)
T ss_pred eeeecCCceEEeeccCCcCc-cccCCcc---ccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcc
Confidence 99999999999999887666 3343221 2223455666433311111111111233344444444444431
Q ss_pred --CCCEEEEEEcCc--EEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCCCccC
Q 000744 1245 --GIDIQHLAVNSD--FIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1245 --~~~V~sla~spd--~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~~La 1306 (1306)
...+.-+.++|+ +.+++..|+.|+++|..+++.+..... |...++++++.|+|-+|+
T Consensus 487 ~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a-----~~~svtslai~~ng~~l~ 547 (577)
T KOG0642|consen 487 RRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVA-----HKDSVTSLAIDPNGPYLM 547 (577)
T ss_pred cccCccceEEecCCCCeeEecccCCceecccccccccchheee-----ccceecceeecCCCceEE
Confidence 123778888887 999999999999999999999998876 778999999999998764
No 169
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.55 E-value=9e-14 Score=156.07 Aligned_cols=195 Identities=14% Similarity=0.173 Sum_probs=141.0
Q ss_pred cccccccccccc------cEEEEEeCCCcEEEEeCCC--ceEEcccCCCCEEEEEEeCC---EEEEEECCCcEEEEeCCC
Q 000744 997 LKKYSAVVTDIQ------KALMNLSSVNATELWHCNE--VTELDSSTNGEVLSLIHLKG---RVLSSHSDGTIKMWDSGK 1065 (1306)
Q Consensus 997 l~ghs~~V~~i~------~~Lasgs~Dg~I~IWd~~~--~~~i~~~H~~~V~sl~fspd---~LaSgs~Dg~I~vWd~~t 1065 (1306)
-.||++.|..+. .+|||||.|.+|++||+.+ ...+...|.+.|.++.|+|. .|++|+.|++|.+.|.+.
T Consensus 239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~ 318 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD 318 (463)
T ss_pred cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccC
Confidence 457888776655 8999999999999999986 45566679999999999984 999999999999999984
Q ss_pred CccceEEEEcccCccEEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEE
Q 000744 1066 RVLRLIQEVREHTRAVTCLYVPSS-GDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVK 1144 (1306)
Q Consensus 1066 ~~~~~i~~l~~H~~~V~sl~fspd-g~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~ 1144 (1306)
.. ..-..+ .-.+.|..++|.|. ...+++++.||+|+-+|++... .+++.+.
T Consensus 319 ~~-~s~~~w-k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~----------~~vwt~~---------------- 370 (463)
T KOG0270|consen 319 PS-NSGKEW-KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG----------KPVWTLK---------------- 370 (463)
T ss_pred cc-ccCceE-EeccceEEEEecCCCceeEEEecCCceEEeeecCCCC----------CceeEEE----------------
Confidence 21 111222 23567999999994 5678889999999999999863 3333332
Q ss_pred EEEecCCEEEeccCCCeEEEEEe---CCEEEEEECCCcEEEEECCCCceeEEecCcccccCCc----cEEEEEEeCC--c
Q 000744 1145 VYNWSGAIKHINFNKHVKSLVMT---GDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ----TIHSLHMHNG--L 1215 (1306)
Q Consensus 1145 i~~~~~~~~l~~~~~~V~sl~~s---~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~----~I~sl~~s~~--~ 1215 (1306)
.|.+.|.+++++ |+.+++++.|+.+++|++.......+. .|. ...|.++.|+ .
T Consensus 371 -----------AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~-------~~~~~~~rl~c~~~~~~~a~ 432 (463)
T KOG0270|consen 371 -----------AHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVK-------EHSFKLGRLHCFALDPDVAF 432 (463)
T ss_pred -----------eccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccc-------cccccccceeecccCCCcce
Confidence 255666666666 567999999999999998765443221 222 2344455544 4
Q ss_pred EEEEEEecCCCEEEEEECCCCceE
Q 000744 1216 LFAGGSSVDGTAGKVFSISSKTAV 1239 (1306)
Q Consensus 1216 ~llas~s~Dg~~I~IWD~~t~~~l 1239 (1306)
.++.+| ..+ .++|||+.+...+
T Consensus 433 ~la~GG-~k~-~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 433 TLAFGG-EKA-VLRVWDIFTNSPV 454 (463)
T ss_pred EEEecC-ccc-eEEEeecccChhH
Confidence 444444 344 7999999876543
No 170
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.55 E-value=2.1e-13 Score=151.69 Aligned_cols=272 Identities=15% Similarity=0.160 Sum_probs=164.4
Q ss_pred cEEEEEeCCCcEEEEeCCC-----------ceEEcccCCCCEEEEEEeCC--EEEEEECCCcEEEEeCC--------C--
Q 000744 1009 KALMNLSSVNATELWHCNE-----------VTELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDSG--------K-- 1065 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~-----------~~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~--------t-- 1065 (1306)
..|+||+.|..|++|.+.. ....+..|...|+++.|+|+ .|+||+.+|.|.+|... +
T Consensus 27 ~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~ 106 (434)
T KOG1009|consen 27 NKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEA 106 (434)
T ss_pred cceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchh
Confidence 3799999999999998752 12345789999999999996 99999999999999876 2
Q ss_pred ----CccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCC
Q 000744 1066 ----RVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPAT 1141 (1306)
Q Consensus 1066 ----~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~ 1141 (1306)
..+.....+.+|...|..++|+|++.++++|+.|+++++||+..|...+. ..+|...|..++| .|-++
T Consensus 107 ~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~-~~dh~~yvqgvaw-------Dpl~q 178 (434)
T KOG1009|consen 107 DLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAI-LDDHEHYVQGVAW-------DPLNQ 178 (434)
T ss_pred hhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEee-ccccccccceeec-------chhhh
Confidence 22456677889999999999999999999999999999999999843222 2236677888875 33333
Q ss_pred eEEEEEecCC--EEEeccCCCeEEEEEe--CCEEEEEECCCcEEEEECCCCceeEEecCcccccCCccEEEEEEeCCcEE
Q 000744 1142 GVKVYNWSGA--IKHINFNKHVKSLVMT--GDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLLF 1217 (1306)
Q Consensus 1142 ~I~i~~~~~~--~~l~~~~~~V~sl~~s--~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~l 1217 (1306)
+|..-+.+.. ....+...-+.++... +...--.+.....++|.=++.+. ..+.++|+|++.+
T Consensus 179 yv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlks--------------FFrRlsfTPdG~l 244 (434)
T KOG1009|consen 179 YVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKS--------------FFRRLSFTPDGSL 244 (434)
T ss_pred hhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhh--------------hhhhcccCCCCcE
Confidence 2222222210 0001111112222110 00000011112233332222211 3345667766666
Q ss_pred EEEEe--------cCCCEEEEEECCC-CceEEEEec-CCCEEEEEEcC------------------c-EEEEEECCCcEE
Q 000744 1218 AGGSS--------VDGTAGKVFSISS-KTAVGSFTT-GIDIQHLAVNS------------------D-FIFTATKCGTIE 1268 (1306)
Q Consensus 1218 las~s--------~Dg~~I~IWD~~t-~~~l~~l~~-~~~V~sla~sp------------------d-~Lasgs~Dg~I~ 1268 (1306)
+++.+ ..-++.++|+-.. .++...++. ...+..+.|+| - .++.....+.|+
T Consensus 245 lvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svy 324 (434)
T KOG1009|consen 245 LVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVY 324 (434)
T ss_pred EEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEE
Confidence 65541 0011334444322 122223322 22233333332 1 333334456899
Q ss_pred EEECCCCeEEEEEecccCCCCCCCeEEEEEcCCCCccC
Q 000744 1269 VWLKERVTRVASVKANNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1269 IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~~La 1306 (1306)
|||.++-.++.... +-|-..|++++|++||.+|+
T Consensus 325 vydtq~~~P~~~v~----nihy~~iTDiaws~dg~~l~ 358 (434)
T KOG1009|consen 325 VYDTQTLEPLAVVD----NIHYSAITDIAWSDDGSVLL 358 (434)
T ss_pred EeccccccceEEEe----eeeeeeecceeecCCCcEEE
Confidence 99999988888776 34557999999999998764
No 171
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.54 E-value=3.2e-13 Score=145.91 Aligned_cols=248 Identities=17% Similarity=0.206 Sum_probs=177.2
Q ss_pred cEEEEEeCCCcEEEEeCCC---------------ceEEcccCCCCEEEEEEeC---------CEEEEEECCCcEEEEeCC
Q 000744 1009 KALMNLSSVNATELWHCNE---------------VTELDSSTNGEVLSLIHLK---------GRVLSSHSDGTIKMWDSG 1064 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~---------------~~~i~~~H~~~V~sl~fsp---------d~LaSgs~Dg~I~vWd~~ 1064 (1306)
.-|.+-+.|..+++|++.. ...+.......|..-+|-+ +++++.+.|.-|++||.-
T Consensus 62 SciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaf 141 (406)
T KOG2919|consen 62 SCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAF 141 (406)
T ss_pred ceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCceeeeecc
Confidence 3477888999999999852 1112223356688888853 389999999999999999
Q ss_pred CCccceEEEEcccCcc---EEEEEEcCCCCEEEEEeCCCcEEEEEc-CCCc-eeEEEee-----cCCCCeEEEEe---CC
Q 000744 1065 KRVLRLIQEVREHTRA---VTCLYVPSSGDKLYSGSLDKTIRVWSI-KPEE-IHCLQVH-----NVKEAVHELTA---NA 1131 (1306)
Q Consensus 1065 t~~~~~i~~l~~H~~~---V~sl~fspdg~~L~Sgs~DgtI~VWdi-~~~~-~~~i~~~-----~~~~~V~sl~~---~~ 1131 (1306)
+|+.++-..-..|.+. ..+++|+|||.+|+.|- .+.|+|+|+ +.|. .....+. ...+.|.+++| +.
T Consensus 142 tG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~ 220 (406)
T KOG2919|consen 142 TGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDS 220 (406)
T ss_pred ccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCC
Confidence 9943333333345544 45899999999998765 678999999 5553 1111122 23567778887 44
Q ss_pred cEEEEEcCCCeEEEEEecCCE---EEeccCCCeEEEEEeCC--EEEEEEC-CCcEEEEECCCC-ceeEEecCcccccCCc
Q 000744 1132 EIACFVSPATGVKVYNWSGAI---KHINFNKHVKSLVMTGD--KLYCGCS-GYSIQEVDLGNL-TSTTFYAGTKKLLGKQ 1204 (1306)
Q Consensus 1132 ~~v~~s~dg~~I~i~~~~~~~---~l~~~~~~V~sl~~s~d--~L~sgs~-Dg~I~iwDl~~~-~~~~~~~~~~~l~gh~ 1204 (1306)
....++.-|+.+-++.+++.. .+.+|.+.|+.+.|.++ ++++|.. |..|-.||++.. .++.. +..|.
T Consensus 221 ~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~------L~rhv 294 (406)
T KOG2919|consen 221 KTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYA------LERHV 294 (406)
T ss_pred cceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhh------hhhhc
Confidence 566777778878888888543 34579999999999954 7998886 788999999974 44443 33332
Q ss_pred --cEEEEEEe--CCcEEEEEEecCCCEEEEEECCC-CceEEEEe-cCCCEEEEEEcCc--EEEEEECC
Q 000744 1205 --TIHSLHMH--NGLLFAGGSSVDGTAGKVFSISS-KTAVGSFT-TGIDIQHLAVNSD--FIFTATKC 1264 (1306)
Q Consensus 1205 --~I~sl~~s--~~~~llas~s~Dg~~I~IWD~~t-~~~l~~l~-~~~~V~sla~spd--~Lasgs~D 1264 (1306)
.=..|.|. |.+.++++|+.|| .|++||+++ +..+..+. +...++.++++|- ++++++..
T Consensus 295 ~~TNQRI~FDld~~~~~LasG~tdG-~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 295 GDTNQRILFDLDPKGEILASGDTDG-SVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred cCccceEEEecCCCCceeeccCCCc-cEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 22345665 8899999999998 899999988 66666665 4456999999998 77777654
No 172
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.54 E-value=2.2e-13 Score=158.37 Aligned_cols=255 Identities=15% Similarity=0.150 Sum_probs=171.2
Q ss_pred EEEEeC--C---EEEEEECCCcEEEEeCCCCccc----eEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 000744 1041 SLIHLK--G---RVLSSHSDGTIKMWDSGKRVLR----LIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEE 1111 (1306)
Q Consensus 1041 sl~fsp--d---~LaSgs~Dg~I~vWd~~t~~~~----~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~ 1111 (1306)
+..|++ + .|+.+..||.|.++|......+ .+..+..|.+.|..+.|-|....|++++.|.++++||+++..
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~ 133 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR 133 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccce
Confidence 356654 2 8999999999999998764322 234566899999999999977799999999999999999985
Q ss_pred eeEE-EeecCCCCeEEEEe---CCcEEEEEcCCCeEEEEEecCCE-E--------Ee---------------------cc
Q 000744 1112 IHCL-QVHNVKEAVHELTA---NAEIACFVSPATGVKVYNWSGAI-K--------HI---------------------NF 1157 (1306)
Q Consensus 1112 ~~~i-~~~~~~~~V~sl~~---~~~~v~~s~dg~~I~i~~~~~~~-~--------l~---------------------~~ 1157 (1306)
..-. ..++|.+.|.+++| ++.+++.+.-+..+.+|+..-+. . +. .+
T Consensus 134 l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~ 213 (720)
T KOG0321|consen 134 LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAA 213 (720)
T ss_pred eecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccc
Confidence 2222 23568899999999 44454444434449999987321 0 00 01
Q ss_pred ----CCCeEEEEEeCC-EEEEEEC-CCcEEEEECCCCceeEEecCcc--cccCC---c-cEEEEEEeC-CcEEEEEEecC
Q 000744 1158 ----NKHVKSLVMTGD-KLYCGCS-GYSIQEVDLGNLTSTTFYAGTK--KLLGK---Q-TIHSLHMHN-GLLFAGGSSVD 1224 (1306)
Q Consensus 1158 ----~~~V~sl~~s~d-~L~sgs~-Dg~I~iwDl~~~~~~~~~~~~~--~l~gh---~-~I~sl~~s~-~~~llas~s~D 1224 (1306)
.+.|+.+.|-.+ +|++++. |+.|++||+++........... .+.-| . .+.++..+. +..+++++ .|
T Consensus 214 s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC-tD 292 (720)
T KOG0321|consen 214 SNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC-TD 292 (720)
T ss_pred cCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe-cC
Confidence 234566666644 7888887 9999999999876554332211 12222 1 466666654 44555554 58
Q ss_pred CCEEEEEECCCCc--eEEEEecCCC--E-EEEEEcCc--EEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEE
Q 000744 1225 GTAGKVFSISSKT--AVGSFTTGID--I-QHLAVNSD--FIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLG 1297 (1306)
Q Consensus 1225 g~~I~IWD~~t~~--~l~~l~~~~~--V-~sla~spd--~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~sla 1297 (1306)
+ .|++||+.+.. ++..+.|+-. + ..-..+|+ ++++|+.|...++|.+.+-+.--.+. .+|.-.|++++
T Consensus 293 ~-sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l----~Ght~eVt~V~ 367 (720)
T KOG0321|consen 293 N-SIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL----LGHTREVTTVR 367 (720)
T ss_pred C-cEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh----hCcceEEEEEe
Confidence 8 79999997643 3444444221 1 11123565 99999999999999998754333322 34667899999
Q ss_pred EcCC
Q 000744 1298 TGVD 1301 (1306)
Q Consensus 1298 fSpd 1301 (1306)
|.|.
T Consensus 368 w~pS 371 (720)
T KOG0321|consen 368 WLPS 371 (720)
T ss_pred eccc
Confidence 9774
No 173
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=1.5e-12 Score=135.72 Aligned_cols=236 Identities=18% Similarity=0.250 Sum_probs=168.3
Q ss_pred cccccccccccccccc---cEEEEEeCCCcEEEEeCCCceE------E----cccC-----CCCEEEEEEeC--CEEEEE
Q 000744 993 TLRKLKKYSAVVTDIQ---KALMNLSSVNATELWHCNEVTE------L----DSST-----NGEVLSLIHLK--GRVLSS 1052 (1306)
Q Consensus 993 ~l~~l~ghs~~V~~i~---~~Lasgs~Dg~I~IWd~~~~~~------i----~~~H-----~~~V~sl~fsp--d~LaSg 1052 (1306)
.+-.+++|.+.+..+. .+|.+|+. |.|+-|...+... . ...| --.|+++...| +-++.+
T Consensus 54 ~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~A 132 (325)
T KOG0649|consen 54 KIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFA 132 (325)
T ss_pred ceeeccccCCCeeeeeeehhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEe
Confidence 3556789999999887 77888776 9999998753111 0 1112 34578888877 466677
Q ss_pred ECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc-eeEEEeecCCCCeEEEEeCC
Q 000744 1053 HSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEE-IHCLQVHNVKEAVHELTANA 1131 (1306)
Q Consensus 1053 s~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~-~~~i~~~~~~~~V~sl~~~~ 1131 (1306)
+.|+.++-||+++| +..++++||++.|.++.--.....++||+.||++||||.++++ ...+...+++. .
T Consensus 133 gGD~~~y~~dlE~G--~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~---~----- 202 (325)
T KOG0649|consen 133 GGDGVIYQVDLEDG--RIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPN---L----- 202 (325)
T ss_pred cCCeEEEEEEecCC--EEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChh---h-----
Confidence 79999999999999 8889999999999999985556689999999999999999984 22222222211 1
Q ss_pred cEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCCEEEEEECCCcEEEEECCCCceeEEecCcccccCCccEEEEEE
Q 000744 1132 EIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHM 1211 (1306)
Q Consensus 1132 ~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~ 1211 (1306)
.-|+ ...+|-+++.+.+++++|+. ..+.+|.++..++..+|+- .+ ++.-+.|
T Consensus 203 ----lRp~-----------------~g~wigala~~edWlvCGgG-p~lslwhLrsse~t~vfpi----pa--~v~~v~F 254 (325)
T KOG0649|consen 203 ----LRPD-----------------WGKWIGALAVNEDWLVCGGG-PKLSLWHLRSSESTCVFPI----PA--RVHLVDF 254 (325)
T ss_pred ----cCcc-----------------cCceeEEEeccCceEEecCC-CceeEEeccCCCceEEEec----cc--ceeEeee
Confidence 1111 24678899999999998864 5689999999999888763 23 6777888
Q ss_pred eCCcEEEEEEecCCCEEEEEECCCCceEEEEec-CCCEEEEEEcCc---EEEEEECCCcEEEEE
Q 000744 1212 HNGLLFAGGSSVDGTAGKVFSISSKTAVGSFTT-GIDIQHLAVNSD---FIFTATKCGTIEVWL 1271 (1306)
Q Consensus 1212 s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~-~~~V~sla~spd---~Lasgs~Dg~I~IWd 1271 (1306)
.++..++++ .|+.+.-|.+. |.....++. +...++..|+-. +|-.++..+.+.|+.
T Consensus 255 ~~d~vl~~G---~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 255 VDDCVLIGG---EGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred ecceEEEec---cccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence 887776655 34578888764 444444443 334666666543 666666777777653
No 174
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.52 E-value=4.4e-13 Score=143.00 Aligned_cols=245 Identities=16% Similarity=0.189 Sum_probs=171.8
Q ss_pred cEEEEEeC----CCcEEEEeCCC--c---eEEcccCCCCEEEEEEeCC-------EEEEEECCCcEEEEeCCC--Cccce
Q 000744 1009 KALMNLSS----VNATELWHCNE--V---TELDSSTNGEVLSLIHLKG-------RVLSSHSDGTIKMWDSGK--RVLRL 1070 (1306)
Q Consensus 1009 ~~Lasgs~----Dg~I~IWd~~~--~---~~i~~~H~~~V~sl~fspd-------~LaSgs~Dg~I~vWd~~t--~~~~~ 1070 (1306)
..||.|+- .+.|.|-.+.. . ..-.+.|.-+++.+.|.|+ .|+|++ ..+++|.+.. ....+
T Consensus 60 ~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~ 137 (364)
T KOG0290|consen 60 FRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVEL 137 (364)
T ss_pred eeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceeh
Confidence 56777764 35666655442 1 1122578999999999974 455554 4799999974 22222
Q ss_pred EEEE-----cccCccEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCce--eEEEeecCCCCeEEEEeCCcEEEEEcCCCe
Q 000744 1071 IQEV-----REHTRAVTCLYVPS-SGDKLYSGSLDKTIRVWSIKPEEI--HCLQVHNVKEAVHELTANAEIACFVSPATG 1142 (1306)
Q Consensus 1071 i~~l-----~~H~~~V~sl~fsp-dg~~L~Sgs~DgtI~VWdi~~~~~--~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~ 1142 (1306)
...+ ..+..+++++.|+. +.+++.+.|-|-|..|||+.++.. ...+.+.
T Consensus 138 ~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIA----------------------- 194 (364)
T KOG0290|consen 138 QSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIA----------------------- 194 (364)
T ss_pred hhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEe-----------------------
Confidence 2222 24567999999998 788999999999999999998621 1122233
Q ss_pred EEEEEecCCEEEeccCCCeEEEEEeC---CEEEEEECCCcEEEEECCCCceeE-EecCcccccCCccEEEEEEe-CCcEE
Q 000744 1143 VKVYNWSGAIKHINFNKHVKSLVMTG---DKLYCGCSGYSIQEVDLGNLTSTT-FYAGTKKLLGKQTIHSLHMH-NGLLF 1217 (1306)
Q Consensus 1143 I~i~~~~~~~~l~~~~~~V~sl~~s~---d~L~sgs~Dg~I~iwDl~~~~~~~-~~~~~~~l~gh~~I~sl~~s-~~~~l 1217 (1306)
|.+.|..++|.. +.+++.+.||++|+||++...--. +|++.. .+.+...++|+ .+-.+
T Consensus 195 --------------HDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~---~~~pLlRLswnkqDpny 257 (364)
T KOG0290|consen 195 --------------HDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPS---PSTPLLRLSWNKQDPNY 257 (364)
T ss_pred --------------cCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCC---CCCcceeeccCcCCchH
Confidence 444455555543 368999999999999999865433 343322 13388889998 56677
Q ss_pred EEEEecCCCEEEEEECCC-CceEEEEe-cCCCEEEEEEcCc---EEEEEECCCcEEEEECCCCeE------EEEEecccC
Q 000744 1218 AGGSSVDGTAGKVFSISS-KTAVGSFT-TGIDIQHLAVNSD---FIFTATKCGTIEVWLKERVTR------VASVKANNS 1286 (1306)
Q Consensus 1218 las~s~Dg~~I~IWD~~t-~~~l~~l~-~~~~V~sla~spd---~Lasgs~Dg~I~IWd~~tg~~------l~~l~~~~~ 1286 (1306)
+++...|+..|.|.|++. ...+..++ |...|+.++|.|. .|.|+++|..+-|||+.+.-. +-.+.
T Consensus 258 mATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~---- 333 (364)
T KOG0290|consen 258 MATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT---- 333 (364)
T ss_pred HhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh----
Confidence 788778888999999987 45677887 5567999999987 999999999999999975321 11111
Q ss_pred CCCCCCeEEEEEcCC
Q 000744 1287 GGGHAKITCLGTGVD 1301 (1306)
Q Consensus 1287 ~~~~~~V~slafSpd 1301 (1306)
....|+.+.|++.
T Consensus 334 --a~~EVNqi~Ws~~ 346 (364)
T KOG0290|consen 334 --AGGEVNQIQWSSS 346 (364)
T ss_pred --ccceeeeeeeccc
Confidence 2358999999853
No 175
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=7.6e-13 Score=145.18 Aligned_cols=268 Identities=11% Similarity=0.069 Sum_probs=189.2
Q ss_pred cccccccccccccc-----cEEEEEeCCCcEEEEeCCC---------ceEEcccCCCCEEEEEEeCC--EEEEEECCCcE
Q 000744 995 RKLKKYSAVVTDIQ-----KALMNLSSVNATELWHCNE---------VTELDSSTNGEVLSLIHLKG--RVLSSHSDGTI 1058 (1306)
Q Consensus 995 ~~l~ghs~~V~~i~-----~~Lasgs~Dg~I~IWd~~~---------~~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I 1058 (1306)
+-+.+|.+-|+.+. ++|++|+.|..+++|++.+ +......|...|.|++|+.. ++++|+.+|+|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 34668999888877 8999999999999999863 22233467899999999863 99999999999
Q ss_pred EEEeCCCCccceEEEEcccC---ccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEE
Q 000744 1059 KMWDSGKRVLRLIQEVREHT---RAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIAC 1135 (1306)
Q Consensus 1059 ~vWd~~t~~~~~i~~l~~H~---~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~ 1135 (1306)
..-|+++. +.+..+. |. +.|+.+..+|..+.|++.+.+|.|.+||++... .+ ....+.+
T Consensus 130 I~HDiEt~--qsi~V~~-~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~-------~~-~~~~~~A------- 191 (609)
T KOG4227|consen 130 IKHDIETK--QSIYVAN-ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ-------NP-ISLVLPA------- 191 (609)
T ss_pred Eeeecccc--eeeeeec-ccCcccceeecccCCCCceEEEEecCceEEEEeccCCC-------CC-Cceeeec-------
Confidence 99999998 6676663 44 489999999999999999999999999998752 00 1111111
Q ss_pred EEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCC---EEEEEECCCcEEEEECCCCc-eeEEecCcccccCCc-cEEEEE
Q 000744 1136 FVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGD---KLYCGCSGYSIQEVDLGNLT-STTFYAGTKKLLGKQ-TIHSLH 1210 (1306)
Q Consensus 1136 ~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d---~L~sgs~Dg~I~iwDl~~~~-~~~~~~~~~~l~gh~-~I~sl~ 1210 (1306)
. ..+...++.|+|. .|++.+..+-+-+||.+..+ .+..+.+...++... ...++.
T Consensus 192 --N------------------~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~ 251 (609)
T KOG4227|consen 192 --N------------------SGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSL 251 (609)
T ss_pred --C------------------CCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhhee
Confidence 1 2234556667754 68889999999999998743 333333333333323 446677
Q ss_pred EeCCcEEEEEEecCCCEEEEEECCCCce-EEEEecCC-------CEEEEEEcCc-EEEEEECCCcEEEEECCCC------
Q 000744 1211 MHNGLLFAGGSSVDGTAGKVFSISSKTA-VGSFTTGI-------DIQHLAVNSD-FIFTATKCGTIEVWLKERV------ 1275 (1306)
Q Consensus 1211 ~s~~~~llas~s~Dg~~I~IWD~~t~~~-l~~l~~~~-------~V~sla~spd-~Lasgs~Dg~I~IWd~~tg------ 1275 (1306)
|++++.-+.+-- -+..=.+||+.+..+ +..+.|.. .+.+++|-.| .+++|+.+-.|++|.+...
T Consensus 252 ~~~~G~Q~msiR-R~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~ 330 (609)
T KOG4227|consen 252 WSPSGNQFMSIR-RGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGF 330 (609)
T ss_pred eCCCCCeehhhh-ccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCc
Confidence 886554443332 333566788877443 44454422 2778899888 8999999999999987531
Q ss_pred ----e-------------EEEEEecccCCCCCCCeEEEEEcCCCCccC
Q 000744 1276 ----T-------------RVASVKANNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1276 ----~-------------~l~~l~~~~~~~~~~~V~slafSpdg~~La 1306 (1306)
. .+..+. +|..-++.|.|+|...+|+
T Consensus 331 ~~IG~~~~~~~~~~~i~~~~~VLr-----GHRSv~NQVRF~~H~~~l~ 373 (609)
T KOG4227|consen 331 TQIGHDEEEMPSEIFIEKELTVLR-----GHRSVPNQVRFSQHNNLLV 373 (609)
T ss_pred cccCcchhhCchhheecceeEEEe-----cccccccceeecCCcceEe
Confidence 1 122333 3667889999999877663
No 176
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.50 E-value=5.2e-11 Score=140.84 Aligned_cols=284 Identities=20% Similarity=0.329 Sum_probs=202.1
Q ss_pred EEEEEeC-CCcEEEEeCCC---ceEEcccCCCCEEEEEEeCC--EEEEEEC-CCcEEEEeCCCCccceEEEEcccCccEE
Q 000744 1010 ALMNLSS-VNATELWHCNE---VTELDSSTNGEVLSLIHLKG--RVLSSHS-DGTIKMWDSGKRVLRLIQEVREHTRAVT 1082 (1306)
Q Consensus 1010 ~Lasgs~-Dg~I~IWd~~~---~~~i~~~H~~~V~sl~fspd--~LaSgs~-Dg~I~vWd~~t~~~~~i~~l~~H~~~V~ 1082 (1306)
++...+. |+.+++|+... .......|...|.++.|+|+ .+++++. |+.+++|+..++ ..+..+.+|...|.
T Consensus 125 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~ 202 (466)
T COG2319 125 ILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG--KPLSTLAGHTDPVS 202 (466)
T ss_pred EEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC--ceEEeeccCCCceE
Confidence 4555444 99999999975 45566789999999999995 6888875 999999999987 78889999999999
Q ss_pred EEEEcCCCC-EEEEEeCCCcEEEEEcCCCceeEEEeecCCCC-eEEEEeCCcEEEEEcCCCeEEEEEecCCE---EE-ec
Q 000744 1083 CLYVPSSGD-KLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEA-VHELTANAEIACFVSPATGVKVYNWSGAI---KH-IN 1156 (1306)
Q Consensus 1083 sl~fspdg~-~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~-V~sl~~~~~~v~~s~dg~~I~i~~~~~~~---~l-~~ 1156 (1306)
+++|+|++. .+++++.|++|++||...+.........|... +..+...+..+........+.+|+..... .. ..
T Consensus 203 ~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 282 (466)
T COG2319 203 SLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSG 282 (466)
T ss_pred EEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEec
Confidence 999999998 66666999999999988653221112223333 33222233333333344448888887332 22 35
Q ss_pred cCCCeEEEEEeC--CEEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeCC-cEEEEEEecCCCEEEEEE
Q 000744 1157 FNKHVKSLVMTG--DKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNG-LLFAGGSSVDGTAGKVFS 1232 (1306)
Q Consensus 1157 ~~~~V~sl~~s~--d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~-~~llas~s~Dg~~I~IWD 1232 (1306)
|...|.++.|+| ..+++++.|+.+.+||..+........ ...|. .+..+.+.++ ..+..++..|+ .+.+|+
T Consensus 283 ~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~ 357 (466)
T COG2319 283 HSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT----LKGHEGPVSSLSFSPDGSLLVSGGSDDG-TIRLWD 357 (466)
T ss_pred CCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee----ecccCCceEEEEECCCCCEEEEeecCCC-cEEeee
Confidence 688999999997 467778999999999998877665433 22455 6888888433 35555545675 799999
Q ss_pred CCCCceEEEEecCCCEEEEEEcCc--EEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCCCcc
Q 000744 1233 ISSKTAVGSFTTGIDIQHLAVNSD--FIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDGHPY 1305 (1306)
Q Consensus 1233 ~~t~~~l~~l~~~~~V~sla~spd--~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~~L 1305 (1306)
...............+..+.+.++ ....+..++.+.+|+............ +...+....+++++..+
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 427 (466)
T COG2319 358 LRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDG-----HTSRVTSLDFSPDGKSL 427 (466)
T ss_pred cCCCceeEEecCCceEEEEEECCCCCEEEEecCCCceEEEecccCeeeeeccC-----CCCcEEEEEECCCCcEE
Confidence 988873333333444788888773 333478999999999999877777653 11578888888888754
No 177
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=1.1e-12 Score=159.23 Aligned_cols=273 Identities=15% Similarity=0.193 Sum_probs=184.0
Q ss_pred CcEEEEeCCCceEEcccCCCCEEEEEEeC--CEEEEEECCCcEEEEeCCCCccceEEEEcccC---ccEEEEEEcC--CC
Q 000744 1018 NATELWHCNEVTELDSSTNGEVLSLIHLK--GRVLSSHSDGTIKMWDSGKRVLRLIQEVREHT---RAVTCLYVPS--SG 1090 (1306)
Q Consensus 1018 g~I~IWd~~~~~~i~~~H~~~V~sl~fsp--d~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~---~~V~sl~fsp--dg 1090 (1306)
..|..||.+. ..+...+-..+.|+| +.+++++..-.|+|||.+.+ +++..|..+. ..|+.+.+-. |.
T Consensus 1050 ~~i~~W~~~~----~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~--~~l~~F~n~~~~~t~Vs~l~liNe~D~ 1123 (1387)
T KOG1517|consen 1050 NPIGNWDQKF----MTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKG--RLLNGFDNGAFPDTRVSDLELINEQDD 1123 (1387)
T ss_pred ccccchHHHH----HhcCCCCCceeeecCCCceeEEcCCcceEEEEecccC--ceeccccCCCCCCCccceeeeecccch
Confidence 4566677432 123333556677887 58888888889999999988 6777765443 4688888865 45
Q ss_pred CEEEEEeCCCcEEEEEcCCC---ceeEEEeec------C--CCCeEEEEe--CCcEEEEEcCCCeEEEEEecCCEEEec-
Q 000744 1091 DKLYSGSLDKTIRVWSIKPE---EIHCLQVHN------V--KEAVHELTA--NAEIACFVSPATGVKVYNWSGAIKHIN- 1156 (1306)
Q Consensus 1091 ~~L~Sgs~DgtI~VWdi~~~---~~~~i~~~~------~--~~~V~sl~~--~~~~v~~s~dg~~I~i~~~~~~~~l~~- 1156 (1306)
.++++|+.||.||||+--.. +.+.+.... . .+.=.-++| ....+..+.|-+.|++||.+...+..+
T Consensus 1124 aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~di 1203 (1387)
T KOG1517|consen 1124 ALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADI 1203 (1387)
T ss_pred hheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeec
Confidence 68999999999999974322 223332221 0 011122234 344455666678899999998877654
Q ss_pred ---cCCCeEEEEEe---CCEEEEEECCCcEEEEECCCCce---eEEecCcccccCCc---cEEEEEEeCCcE-EEEEEec
Q 000744 1157 ---FNKHVKSLVMT---GDKLYCGCSGYSIQEVDLGNLTS---TTFYAGTKKLLGKQ---TIHSLHMHNGLL-FAGGSSV 1223 (1306)
Q Consensus 1157 ---~~~~V~sl~~s---~d~L~sgs~Dg~I~iwDl~~~~~---~~~~~~~~~l~gh~---~I~sl~~s~~~~-llas~s~ 1223 (1306)
.+..|+++.-+ ++.+++|..||.|++||.+.... +..+ ..|+ +|..+.+.+++. -+++++.
T Consensus 1204 P~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~------R~h~~~~~Iv~~slq~~G~~elvSgs~ 1277 (1387)
T KOG1517|consen 1204 PYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVY------REHNDVEPIVHLSLQRQGLGELVSGSQ 1277 (1387)
T ss_pred ccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceee------cccCCcccceeEEeecCCCcceeeecc
Confidence 35567777655 56899999999999999986432 3333 3455 488999986443 3667778
Q ss_pred CCCEEEEEECCCCceEEEEe------cCCCEEEEEEcCc--EEEEEECCCcEEEEECCCCeEEEEEecccC--CCCCCCe
Q 000744 1224 DGTAGKVFSISSKTAVGSFT------TGIDIQHLAVNSD--FIFTATKCGTIEVWLKERVTRVASVKANNS--GGGHAKI 1293 (1306)
Q Consensus 1224 Dg~~I~IWD~~t~~~l~~l~------~~~~V~sla~spd--~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~--~~~~~~V 1293 (1306)
|| .|++||++.......+. .++..+++.+|+. ++++|+. +.|+||++. |+.+..+..+.. +...+.+
T Consensus 1278 ~G-~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~ 1354 (1387)
T KOG1517|consen 1278 DG-DIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSV 1354 (1387)
T ss_pred CC-eEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCc
Confidence 98 89999998842222221 2445999999988 9999988 999999986 555555543211 2223678
Q ss_pred EEEEEcCCCCcc
Q 000744 1294 TCLGTGVDGHPY 1305 (1306)
Q Consensus 1294 ~slafSpdg~~L 1305 (1306)
.|++|+|---+|
T Consensus 1355 scL~FHP~~~ll 1366 (1387)
T KOG1517|consen 1355 SCLAFHPHRLLL 1366 (1387)
T ss_pred ceeeecchhHhh
Confidence 999999965443
No 178
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.47 E-value=2e-12 Score=156.89 Aligned_cols=255 Identities=15% Similarity=0.138 Sum_probs=172.0
Q ss_pred CcEEEEeCCCc--eEEcccCCCCEEEEEEeC---CEEEEEECCCcEEEEeCCCCccceEE----EEcccCccEEEEEEcC
Q 000744 1018 NATELWHCNEV--TELDSSTNGEVLSLIHLK---GRVLSSHSDGTIKMWDSGKRVLRLIQ----EVREHTRAVTCLYVPS 1088 (1306)
Q Consensus 1018 g~I~IWd~~~~--~~i~~~H~~~V~sl~fsp---d~LaSgs~Dg~I~vWd~~t~~~~~i~----~l~~H~~~V~sl~fsp 1088 (1306)
+.+.+|+++.. -.....-...|+|+.|+| +.++.|..+|.|.+||+..+...+.. ....|..+|+.+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 47899999853 233344578899999987 49999999999999999876322121 2236889999999977
Q ss_pred CC--CEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEE
Q 000744 1089 SG--DKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVM 1166 (1306)
Q Consensus 1089 dg--~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~ 1166 (1306)
+. .-|+|+|.||.|..|+++.-.. ....... ..... ...+. .....+++++|
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~-P~e~~~~-~~~~~---------~~~~~---------------~~~~~~t~~~F 355 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSL-PVEGLLL-ESKKH---------KGQQS---------------SKAVGATSLKF 355 (555)
T ss_pred cCCCCceEEEecCCcEeeeecccccc-chhhccc-ccccc---------ccccc---------------ccccceeeEee
Confidence 54 4599999999999998775310 0100000 00000 00000 12345677888
Q ss_pred e---CCEEEEEECCCcEEEEECCCCce--eEEecCcccccCCc-cEEEEEEeCCc--EEEEEEecCCCEEEEEECC-CCc
Q 000744 1167 T---GDKLYCGCSGYSIQEVDLGNLTS--TTFYAGTKKLLGKQ-TIHSLHMHNGL--LFAGGSSVDGTAGKVFSIS-SKT 1237 (1306)
Q Consensus 1167 s---~d~L~sgs~Dg~I~iwDl~~~~~--~~~~~~~~~l~gh~-~I~sl~~s~~~--~llas~s~Dg~~I~IWD~~-t~~ 1237 (1306)
. |+.++.|+.+|.|.--+-...+. ...|+++.....|. +|+++.++|=+ .|+++| |. +++||... ...
T Consensus 356 ~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g--DW-~vriWs~~~~~~ 432 (555)
T KOG1587|consen 356 EPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG--DW-TVRIWSEDVIAS 432 (555)
T ss_pred ccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec--cc-eeEeccccCCCC
Confidence 7 55799999999988743332221 13455554555666 99999998643 344443 77 89999987 566
Q ss_pred eEEEEec-CCCEEEEEEcCc---EEEEEECCCcEEEEECCCCe--EEEEEecccCCCCCCCeEEEEEcCCCCccC
Q 000744 1238 AVGSFTT-GIDIQHLAVNSD---FIFTATKCGTIEVWLKERVT--RVASVKANNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1238 ~l~~l~~-~~~V~sla~spd---~Lasgs~Dg~I~IWd~~tg~--~l~~l~~~~~~~~~~~V~slafSpdg~~La 1306 (1306)
++..+.. ...|++++|||. .++++..||.|.|||+.... ++.+... +....+.+.|+++|+.|+
T Consensus 433 Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~-----~~~~l~~~~~s~~g~~la 502 (555)
T KOG1587|consen 433 PLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKV-----CSPALTRVRWSPNGKLLA 502 (555)
T ss_pred cchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccc-----cccccceeecCCCCcEEE
Confidence 6666654 444999999997 89999999999999987543 4444432 335667888898888764
No 179
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=1.5e-12 Score=142.18 Aligned_cols=262 Identities=15% Similarity=0.234 Sum_probs=181.5
Q ss_pred cEEEEEeCCCcEEEEeCCC--ceEEcccCCCCEEEEEEeC----CEEEEEECCCcEEEEeCCCCccceEEEEcccC-ccE
Q 000744 1009 KALMNLSSVNATELWHCNE--VTELDSSTNGEVLSLIHLK----GRVLSSHSDGTIKMWDSGKRVLRLIQEVREHT-RAV 1081 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~--~~~i~~~H~~~V~sl~fsp----d~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~-~~V 1081 (1306)
..+|++-+.|+|++||..+ ......+|...+..+.|.. +.+.+|+.||+|++||++.........+.+|. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5688999999999999987 4555678888888888864 49999999999999999876445555666676 567
Q ss_pred EEEEEcCCCCEEEEEe----CCCcEEEEEcCCCceeEEEe--ecCCCCeEEEEe----CCcEEEEEcCCCeEEEEEecCC
Q 000744 1082 TCLYVPSSGDKLYSGS----LDKTIRVWSIKPEEIHCLQV--HNVKEAVHELTA----NAEIACFVSPATGVKVYNWSGA 1151 (1306)
Q Consensus 1082 ~sl~fspdg~~L~Sgs----~DgtI~VWdi~~~~~~~i~~--~~~~~~V~sl~~----~~~~v~~s~dg~~I~i~~~~~~ 1151 (1306)
.|++.+..++.+++|+ .|-.|.+||++..+. .+.. -.|.+.|+++.| .+.++..+.||- +.+++..+.
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq-~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGL-vnlfD~~~d 198 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQ-LLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGL-VNLFDTKKD 198 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccc-hhhhhhhhccCcceeEEecCCCCCeEEeecccce-EEeeecCCC
Confidence 7888777788888886 367799999998642 1222 237899999999 344556666665 888888743
Q ss_pred ------EEEeccCCCeEEEEEeCC---EEEEEECCCcEEEEECCCCceeEEecCccccc-------CCc-cEEEEEEeCC
Q 000744 1152 ------IKHINFNKHVKSLVMTGD---KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLL-------GKQ-TIHSLHMHNG 1214 (1306)
Q Consensus 1152 ------~~l~~~~~~V~sl~~s~d---~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~-------gh~-~I~sl~~s~~ 1214 (1306)
..+.++...|.++.|.++ .|.+-+.+++..+|++..+.+...+....... ... -|....-.+.
T Consensus 199 ~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~ 278 (376)
T KOG1188|consen 199 NEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDK 278 (376)
T ss_pred cchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCc
Confidence 345678889999999955 59999999999999999987665444221100 111 2222222233
Q ss_pred cEEEEEEecCCCEEEEEECC---CC---ceEEEEec-CCC-EEEEEEcCc--EEEEEECCCcEEEEECC
Q 000744 1215 LLFAGGSSVDGTAGKVFSIS---SK---TAVGSFTT-GID-IQHLAVNSD--FIFTATKCGTIEVWLKE 1273 (1306)
Q Consensus 1215 ~~llas~s~Dg~~I~IWD~~---t~---~~l~~l~~-~~~-V~sla~spd--~Lasgs~Dg~I~IWd~~ 1273 (1306)
..+...+. |.+...++-+. ++ +.+..+.+ |.. |.++.|... +++||++||.+.+|..+
T Consensus 279 ~~~~l~g~-~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 279 DTCALAGT-DSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred ceEEEecc-ccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 44444432 22244444332 32 34445554 322 677777543 99999999999999953
No 180
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=3.8e-12 Score=154.80 Aligned_cols=257 Identities=17% Similarity=0.247 Sum_probs=177.9
Q ss_pred cEEEEEeCCCcEEEEeCCCceEEcccC-----CCCEEEEEEeCC----EEEEEECCCcEEEEeCC-C--CccceEEEEcc
Q 000744 1009 KALMNLSSVNATELWHCNEVTELDSST-----NGEVLSLIHLKG----RVLSSHSDGTIKMWDSG-K--RVLRLIQEVRE 1076 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~~~i~~~H-----~~~V~sl~fspd----~LaSgs~Dg~I~vWd~~-t--~~~~~i~~l~~ 1076 (1306)
..++++.....|+|||.+........+ ...|+.+.+-++ .+++|+.||.|+||+-- + ++.+.+.-+.+
T Consensus 1077 p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~ 1156 (1387)
T KOG1517|consen 1077 PQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSS 1156 (1387)
T ss_pred ceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeecc
Confidence 668888878899999998655443333 556999998752 89999999999999853 2 22244443322
Q ss_pred ---c----CccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEee--cCCCCeEEEEe---C-CcEEEEEcCCCeE
Q 000744 1077 ---H----TRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVH--NVKEAVHELTA---N-AEIACFVSPATGV 1143 (1306)
Q Consensus 1077 ---H----~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~--~~~~~V~sl~~---~-~~~v~~s~dg~~I 1143 (1306)
+ .+.=.-++|.....+|+++|.-..|+|||.... .++... .....|+++.- + +.++....||. +
T Consensus 1157 Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E--~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGs-v 1233 (1387)
T KOG1517|consen 1157 LSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKE--QVVADIPYGSSTLVTALSADLVHGNIIAAGFADGS-V 1233 (1387)
T ss_pred ccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccc--eeEeecccCCCccceeecccccCCceEEEeecCCc-e
Confidence 1 111234678776667777777899999999886 333332 24456777765 3 44455555665 8
Q ss_pred EEEEecC-----CEEEe-ccCCC--eEEEEEeCC---EEEEEECCCcEEEEECCCCceeEEecCcccccCCc----cEEE
Q 000744 1144 KVYNWSG-----AIKHI-NFNKH--VKSLVMTGD---KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ----TIHS 1208 (1306)
Q Consensus 1144 ~i~~~~~-----~~~l~-~~~~~--V~sl~~s~d---~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~----~I~s 1208 (1306)
++||..- .+..| .|+.. |..+.+.++ .+++|+.||.|++||++.......+. +..|. ..++
T Consensus 1234 RvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~----iv~~~~yGs~lTa 1309 (1387)
T KOG1517|consen 1234 RVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLT----IVAHWEYGSALTA 1309 (1387)
T ss_pred EEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccce----eeeccccCcccee
Confidence 8888772 23333 36655 888888753 59999999999999999852222111 11111 4889
Q ss_pred EEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEec--------CCCEEEEEEcCc--EEEEEECCCcEEEEECCCC
Q 000744 1209 LHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFTT--------GIDIQHLAVNSD--FIFTATKCGTIEVWLKERV 1275 (1306)
Q Consensus 1209 l~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~--------~~~V~sla~spd--~Lasgs~Dg~I~IWd~~tg 1275 (1306)
+.+|....++++|+. + .|+||++. |+.+..++. .+.+.|++|||- .+++|+.|.+|.||..+++
T Consensus 1310 l~VH~hapiiAsGs~-q-~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1310 LTVHEHAPIIASGSA-Q-LIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred eeeccCCCeeeecCc-c-eEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 999999889988864 5 89999976 444444431 234899999998 8999999999999988764
No 181
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.47 E-value=6.7e-13 Score=140.05 Aligned_cols=264 Identities=16% Similarity=0.122 Sum_probs=176.9
Q ss_pred eEEcccCCCCEEEEEEeCC-EEEEEECCCcEEEEeCCCCccceEEEEc-ccCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 000744 1029 TELDSSTNGEVLSLIHLKG-RVLSSHSDGTIKMWDSGKRVLRLIQEVR-EHTRAVTCLYVPSSGDKLYSGSLDKTIRVWS 1106 (1306)
Q Consensus 1029 ~~i~~~H~~~V~sl~fspd-~LaSgs~Dg~I~vWd~~t~~~~~i~~l~-~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWd 1106 (1306)
.-+..+|.+.|+|+.|..+ +|++|..-|.|++|++.+. .....++ .|...|+.+.--|+ ..+.+-+.|+.+.+|+
T Consensus 7 ~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~--r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTE--RDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWT 83 (323)
T ss_pred eeEeccccchheehhhccchhhhcccccceEEEEEeecC--ccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEE
Confidence 3455689999999999874 9999999999999999998 5666676 57788999988876 5788999999999999
Q ss_pred cCCCceeEEEeecCCCCeEEEEeCC-----------cEEEEEcCCCeEEEEEecC----CEEEe-----ccCCCeEEEEE
Q 000744 1107 IKPEEIHCLQVHNVKEAVHELTANA-----------EIACFVSPATGVKVYNWSG----AIKHI-----NFNKHVKSLVM 1166 (1306)
Q Consensus 1107 i~~~~~~~i~~~~~~~~V~sl~~~~-----------~~v~~s~dg~~I~i~~~~~----~~~l~-----~~~~~V~sl~~ 1166 (1306)
+..+....+.. -.+.++.|-. ........|... +.-.++ .+.+. ...+.+.|..+
T Consensus 84 ia~s~~i~i~S----i~~nslgFCrfSl~~~~k~~eqll~yp~rgsde-~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~ 158 (323)
T KOG0322|consen 84 IAYSAFISIHS----IVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDE-THKQDGGDTTQVQIADDSERSKLGSVMCQDK 158 (323)
T ss_pred ccCcceEEEee----eeccccccccceeccCCCcchhheecCCcccch-hhhhccCccceeEccCchhccccCceeeeec
Confidence 98763222221 2333443311 111111111111 111111 01111 13456777765
Q ss_pred eCC-----EEEEEECCCcEEEEECCCCceeEEecCcc----cccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCC-
Q 000744 1167 TGD-----KLYCGCSGYSIQEVDLGNLTSTTFYAGTK----KLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISS- 1235 (1306)
Q Consensus 1167 s~d-----~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~----~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t- 1235 (1306)
..+ .+++|..+|.+.+||+.++..+..++... ....|. +|.++.+.+-..-=++++.+. .+..|+++.
T Consensus 159 ~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~d-kl~~~Sl~~s 237 (323)
T KOG0322|consen 159 DHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADD-KLVMYSLNHS 237 (323)
T ss_pred cccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccc-cceeeeeccc
Confidence 422 47899999999999999985444333211 233566 999999963211112333455 588888754
Q ss_pred -CceE--EEEe-cCCCEEEEEEcCc--EEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCCCccC
Q 000744 1236 -KTAV--GSFT-TGIDIQHLAVNSD--FIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1236 -~~~l--~~l~-~~~~V~sla~spd--~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~~La 1306 (1306)
+.+. ..+. .+-.|..+.+-|| +++|++.|+.|+||+.++.+++..+.. |...|++++|+||...+|
T Consensus 238 ~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLky-----Hsagvn~vAfspd~~lmA 309 (323)
T KOG0322|consen 238 TGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKY-----HSAGVNAVAFSPDCELMA 309 (323)
T ss_pred cCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhh-----hhcceeEEEeCCCCchhh
Confidence 3322 1222 2445888888888 999999999999999999999999974 889999999999976654
No 182
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.46 E-value=6.3e-11 Score=140.10 Aligned_cols=256 Identities=23% Similarity=0.339 Sum_probs=180.3
Q ss_pred ccccccccccccc-----cEEEEEeCCCcEEEEeCCCce---EEcccCC-CCEEEEEE-eCC---EEEEEEC-CCcEEEE
Q 000744 996 KLKKYSAVVTDIQ-----KALMNLSSVNATELWHCNEVT---ELDSSTN-GEVLSLIH-LKG---RVLSSHS-DGTIKMW 1061 (1306)
Q Consensus 996 ~l~ghs~~V~~i~-----~~Lasgs~Dg~I~IWd~~~~~---~i~~~H~-~~V~sl~f-spd---~LaSgs~-Dg~I~vW 1061 (1306)
.+.+|...+..+. ..++.++.|+.+.+|+..... ....++. ..+..+.+ +++ .+...+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 3456666665544 678888899999999987542 2333323 36777777 553 4444444 9999999
Q ss_pred eCCC-CccceEEEEcccCccEEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCceeEEEeec-CCCCeEEEEeCCcEEEEEc
Q 000744 1062 DSGK-RVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSL-DKTIRVWSIKPEEIHCLQVHN-VKEAVHELTANAEIACFVS 1138 (1306)
Q Consensus 1062 d~~t-~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~-DgtI~VWdi~~~~~~~i~~~~-~~~~V~sl~~~~~~v~~s~ 1138 (1306)
|..+ . .....+..|...|..+.|+|++..+++++. |+.+++|+...+. .+.... |...|.++. +.+
T Consensus 140 ~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~-------~~~ 208 (466)
T COG2319 140 DLSTPG--KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK--PLSTLAGHTDPVSSLA-------FSP 208 (466)
T ss_pred EecCCC--eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc--eEEeeccCCCceEEEE-------EcC
Confidence 9997 5 678888999999999999999999999886 9999999998742 222211 344555554 333
Q ss_pred CCCeEEEEEecCCEEEeccCCCeEEEEEeCCEEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeCCcEE
Q 000744 1139 PATGVKVYNWSGAIKHINFNKHVKSLVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLF 1217 (1306)
Q Consensus 1139 dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~l 1217 (1306)
++. ..+++++.|+.|++||...+..... .+.+|. .. ...|++++.+
T Consensus 209 ~~~---------------------------~~~~~~~~d~~i~~wd~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~ 255 (466)
T COG2319 209 DGG---------------------------LLIASGSSDGTIRLWDLSTGKLLRS-----TLSGHSDSV-VSSFSPDGSL 255 (466)
T ss_pred Ccc---------------------------eEEEEecCCCcEEEEECCCCcEEee-----ecCCCCcce-eEeECCCCCE
Confidence 332 0244458999999999887776652 233555 43 2278877755
Q ss_pred EEEEecCCCEEEEEECCCCce-EEEE-ecCCCEEEEEEcCc--EEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCe
Q 000744 1218 AGGSSVDGTAGKVFSISSKTA-VGSF-TTGIDIQHLAVNSD--FIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKI 1293 (1306)
Q Consensus 1218 las~s~Dg~~I~IWD~~t~~~-l~~l-~~~~~V~sla~spd--~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V 1293 (1306)
+.+++.|+ .+++||...... +..+ .|...|.++.|+|+ .+++++.|+.+.+|+..+......... ..|...|
T Consensus 256 ~~~~~~d~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~ 331 (466)
T COG2319 256 LASGSSDG-TIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTL---KGHEGPV 331 (466)
T ss_pred EEEecCCC-cEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeee---cccCCce
Confidence 55777787 899999987664 4444 34567999999995 777799999999999998876666641 1244568
Q ss_pred EEEEEc
Q 000744 1294 TCLGTG 1299 (1306)
Q Consensus 1294 ~slafS 1299 (1306)
..+.|+
T Consensus 332 ~~~~~~ 337 (466)
T COG2319 332 SSLSFS 337 (466)
T ss_pred EEEEEC
Confidence 888883
No 183
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.45 E-value=1.8e-12 Score=136.91 Aligned_cols=270 Identities=14% Similarity=0.102 Sum_probs=184.0
Q ss_pred cccccccccccccccc----cEEEEEeCCCcEEEEeCCCceE--Ecc-cCCCCEEEEEEeC-CEEEEEECCCcEEEEeCC
Q 000744 993 TLRKLKKYSAVVTDIQ----KALMNLSSVNATELWHCNEVTE--LDS-STNGEVLSLIHLK-GRVLSSHSDGTIKMWDSG 1064 (1306)
Q Consensus 993 ~l~~l~ghs~~V~~i~----~~Lasgs~Dg~I~IWd~~~~~~--i~~-~H~~~V~sl~fsp-d~LaSgs~Dg~I~vWd~~ 1064 (1306)
+...+++|++.|+++. ++|.+|...|.|++|++++... ... .|...|+.+..-| +.+.+-+.|+.+.+|++.
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia 85 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIA 85 (323)
T ss_pred CeeEeccccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEcc
Confidence 3456779999999877 8899999999999999986432 233 5788899998888 599999999999999998
Q ss_pred CCccceEEEEcccCccEEEEEEcCC-----CC----EEEEEeCCCc-EEEEEcCCCceeEEEe---ecCCCCeEEEEe--
Q 000744 1065 KRVLRLIQEVREHTRAVTCLYVPSS-----GD----KLYSGSLDKT-IRVWSIKPEEIHCLQV---HNVKEAVHELTA-- 1129 (1306)
Q Consensus 1065 t~~~~~i~~l~~H~~~V~sl~fspd-----g~----~L~Sgs~Dgt-I~VWdi~~~~~~~i~~---~~~~~~V~sl~~-- 1129 (1306)
.+.+..+ |.-.++++.|.+. ++ .++.-+.... +.+-|.......++.. ....+.+.+..+
T Consensus 86 ~s~~i~i-----~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~ 160 (323)
T KOG0322|consen 86 YSAFISI-----HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDH 160 (323)
T ss_pred CcceEEE-----eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccc
Confidence 7633333 3334455555432 11 1111111000 1111211110011111 112355666654
Q ss_pred ---CCcEEEEEcCCCeEEEEEecCCEEEe-------------ccCCCeEEEEEeCC--EEEEEECCCcEEEEECCCC--c
Q 000744 1130 ---NAEIACFVSPATGVKVYNWSGAIKHI-------------NFNKHVKSLVMTGD--KLYCGCSGYSIQEVDLGNL--T 1189 (1306)
Q Consensus 1130 ---~~~~v~~s~dg~~I~i~~~~~~~~l~-------------~~~~~V~sl~~s~d--~L~sgs~Dg~I~iwDl~~~--~ 1189 (1306)
...++..+.....+.+|+.+...+++ .|..+|.++.|.+. .=++|+.+..+..|++... .
T Consensus 161 ~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gs 240 (323)
T KOG0322|consen 161 ACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGS 240 (323)
T ss_pred cccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCc
Confidence 23344555666669999998543222 37889999999853 4578888888999988753 2
Q ss_pred eeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEe-cCCCEEEEEEcCc--EEEEEECCC
Q 000744 1190 STTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFT-TGIDIQHLAVNSD--FIFTATKCG 1265 (1306)
Q Consensus 1190 ~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~-~~~~V~sla~spd--~Lasgs~Dg 1265 (1306)
+.. .. .+.-.+ .|..+.+-||+.+++++++|+ .||||+.++.+.+..++ |...|++++|+|+ .++++|.|+
T Consensus 241 lq~--~~--e~~lknpGv~gvrIRpD~KIlATAGWD~-RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~ 315 (323)
T KOG0322|consen 241 LQI--RK--EITLKNPGVSGVRIRPDGKILATAGWDH-RIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDA 315 (323)
T ss_pred ccc--cc--eEEecCCCccceEEccCCcEEeecccCC-cEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCc
Confidence 211 11 111122 678888999999999999999 69999999999999998 5567999999999 999999999
Q ss_pred cEEEEEC
Q 000744 1266 TIEVWLK 1272 (1306)
Q Consensus 1266 ~I~IWd~ 1272 (1306)
.|.+|++
T Consensus 316 rISLWkL 322 (323)
T KOG0322|consen 316 RISLWKL 322 (323)
T ss_pred eEEeeec
Confidence 9999986
No 184
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.44 E-value=1e-13 Score=120.94 Aligned_cols=63 Identities=48% Similarity=0.904 Sum_probs=59.4
Q ss_pred cccCcccccccCCcEEcCCCCcccHHHHHHHHHcCCCCCCCCCCccCCCCCCCccHHHHHHHHHH
Q 000744 343 DFVCPITGQIFNDPVTLETGQTYERKAIQEWLKRGNTTCPITRQPLCSNSLPKTNYVLKRLITSW 407 (1306)
Q Consensus 343 ~~~CpIc~~l~~dPv~~~cGhtfc~~cI~~~~~~~~~~CP~c~~~l~~~~l~~~N~~L~~li~~~ 407 (1306)
+|.||||+++|.|||+++|||+||+.||.+|+.. +.+||.|++++...+++ +|..|++.|+.|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~-~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLI-PNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhce-eCHHHHHHHHhC
Confidence 5889999999999999999999999999999987 67899999999988986 999999999987
No 185
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=2.8e-13 Score=167.52 Aligned_cols=221 Identities=14% Similarity=0.124 Sum_probs=163.6
Q ss_pred cEEEEEeCCCcEEEEeCCCc--------eEEcccCCCCEEEEEEeC---CEEEEEECCCcEEEEeCCCCccceEEEE--c
Q 000744 1009 KALMNLSSVNATELWHCNEV--------TELDSSTNGEVLSLIHLK---GRVLSSHSDGTIKMWDSGKRVLRLIQEV--R 1075 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~--------~~i~~~H~~~V~sl~fsp---d~LaSgs~Dg~I~vWd~~t~~~~~i~~l--~ 1075 (1306)
.+||.|..||.|.+||.... ......|++.|..+.|++ +.|++|+.||.|.|||+.+- +.-.++ .
T Consensus 81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~--~tP~~~~~~ 158 (1049)
T KOG0307|consen 81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKP--ETPFTPGSQ 158 (1049)
T ss_pred ceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCc--CCCCCCCCC
Confidence 57999999999999998642 223467999999999997 49999999999999999875 322333 2
Q ss_pred ccCccEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCc-eeEEEeecCCCCeEEEEe----CCcEEEEEcCC--CeEEEEE
Q 000744 1076 EHTRAVTCLYVPS-SGDKLYSGSLDKTIRVWSIKPEE-IHCLQVHNVKEAVHELTA----NAEIACFVSPA--TGVKVYN 1147 (1306)
Q Consensus 1076 ~H~~~V~sl~fsp-dg~~L~Sgs~DgtI~VWdi~~~~-~~~i~~~~~~~~V~sl~~----~~~~v~~s~dg--~~I~i~~ 1147 (1306)
.-.+.|.+++|+. ....|+||+.+|++.|||++..+ +..+........+..+.| ...++..+.|. ..|.+||
T Consensus 159 ~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWD 238 (1049)
T KOG0307|consen 159 APPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWD 238 (1049)
T ss_pred CCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeec
Confidence 2456899999998 46789999999999999999873 111222222234678887 23444444444 3477788
Q ss_pred ecC---CEE-EeccCCCeEEEEEeC---CEEEEEECCCcEEEEECCCCceeEEecCcccccCCccEEEEEEeCCcE-EEE
Q 000744 1148 WSG---AIK-HINFNKHVKSLVMTG---DKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLL-FAG 1219 (1306)
Q Consensus 1148 ~~~---~~~-l~~~~~~V~sl~~s~---d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~-lla 1219 (1306)
.+. ..+ +.+|...|.++.|.+ .++++++.|+.|.+|+.++++.+..+.. +.+++..+.|.|..- +++
T Consensus 239 lR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~-----~~nW~fdv~w~pr~P~~~A 313 (1049)
T KOG0307|consen 239 LRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA-----QGNWCFDVQWCPRNPSVMA 313 (1049)
T ss_pred ccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC-----CCcceeeeeecCCCcchhh
Confidence 662 233 347999999999994 3689999999999999999999886542 112899999985543 555
Q ss_pred EEecCCCEEEEEECCCCc
Q 000744 1220 GSSVDGTAGKVFSISSKT 1237 (1306)
Q Consensus 1220 s~s~Dg~~I~IWD~~t~~ 1237 (1306)
..+.|| .|.||.+.+..
T Consensus 314 ~asfdg-kI~I~sl~~~~ 330 (1049)
T KOG0307|consen 314 AASFDG-KISIYSLQGTD 330 (1049)
T ss_pred hheecc-ceeeeeeecCC
Confidence 566798 79999987643
No 186
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.44 E-value=7.5e-12 Score=133.54 Aligned_cols=249 Identities=15% Similarity=0.193 Sum_probs=171.8
Q ss_pred CCCcEEEEeCCC-----ceEEcccCCCCEEEEEEeC-C--EEEEEECC-------CcEEEEeCCCCc-------cceEEE
Q 000744 1016 SVNATELWHCNE-----VTELDSSTNGEVLSLIHLK-G--RVLSSHSD-------GTIKMWDSGKRV-------LRLIQE 1073 (1306)
Q Consensus 1016 ~Dg~I~IWd~~~-----~~~i~~~H~~~V~sl~fsp-d--~LaSgs~D-------g~I~vWd~~t~~-------~~~i~~ 1073 (1306)
.|+.|.+-++.. ...++..|-+.|+.++-+| + .|+|+..| ..+.||.+.... ++++..
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 367888877764 2345567899999999998 2 66666542 246799985431 234444
Q ss_pred Ec-ccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEe-----ecCCCCeEEEEe----CCcEEEEEcCCCeE
Q 000744 1074 VR-EHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQV-----HNVKEAVHELTA----NAEIACFVSPATGV 1143 (1306)
Q Consensus 1074 l~-~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~-----~~~~~~V~sl~~----~~~~v~~s~dg~~I 1143 (1306)
+. .+-+.|.|+.|.|++..+++-. |..|.+|++..+....... ..+....++-.| +.+.+....+ ..+
T Consensus 118 Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d-~tl 195 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSD-STL 195 (370)
T ss_pred CCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCC-CcE
Confidence 44 5667899999999999999877 8899999998764211111 112333444444 2233434444 448
Q ss_pred EEEEecCCEEEe----ccCCCeEEEEEeCC---EEEEEECCCcEEEEECCCCc-eeEEecCcccccCCc-cEEEEEEeC-
Q 000744 1144 KVYNWSGAIKHI----NFNKHVKSLVMTGD---KLYCGCSGYSIQEVDLGNLT-STTFYAGTKKLLGKQ-TIHSLHMHN- 1213 (1306)
Q Consensus 1144 ~i~~~~~~~~l~----~~~~~V~sl~~s~d---~L~sgs~Dg~I~iwDl~~~~-~~~~~~~~~~l~gh~-~I~sl~~s~- 1213 (1306)
..|+.+...+.+ .|...|..+.|+|+ +|++++.||.|++||.++-+ +++ .+.+|. +|+++.|+|
T Consensus 196 ~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~------el~~HsHWvW~VRfn~~ 269 (370)
T KOG1007|consen 196 QFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQ------ELPGHSHWVWAVRFNPE 269 (370)
T ss_pred EEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccc------ccCCCceEEEEEEecCc
Confidence 888887554444 37788999999998 59999999999999999754 444 466888 999999984
Q ss_pred -CcEEEEEEecCCCEEEEEECCCCc-----------------------------eEEEEe-cCCCEEEEEEcCc---EEE
Q 000744 1214 -GLLFAGGSSVDGTAGKVFSISSKT-----------------------------AVGSFT-TGIDIQHLAVNSD---FIF 1259 (1306)
Q Consensus 1214 -~~~llas~s~Dg~~I~IWD~~t~~-----------------------------~l~~l~-~~~~V~sla~spd---~La 1259 (1306)
+.+++ +++.|. .|.+|...+-. .+.++. |...|++++|+.- +++
T Consensus 270 hdqLiL-s~~SDs-~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFA 347 (370)
T KOG1007|consen 270 HDQLIL-SGGSDS-AVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFA 347 (370)
T ss_pred cceEEE-ecCCCc-eeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEE
Confidence 34444 555688 69998653210 123443 4567999999864 899
Q ss_pred EEECCCcEEEEECCC
Q 000744 1260 TATKCGTIEVWLKER 1274 (1306)
Q Consensus 1260 sgs~Dg~I~IWd~~t 1274 (1306)
+-|.||.+.|=++..
T Consensus 348 SLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 348 SLSYDGRVIISSVPR 362 (370)
T ss_pred EeccCceEEeecCCh
Confidence 999999998866653
No 187
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=1.1e-12 Score=143.12 Aligned_cols=242 Identities=16% Similarity=0.190 Sum_probs=159.1
Q ss_pred hhhccccccccccccccccc-------cEEEEEeCCCcEEEEeCCCce----EEcccCC-CCEEEEEEe-C-CEEEEEE-
Q 000744 989 CIYGTLRKLKKYSAVVTDIQ-------KALMNLSSVNATELWHCNEVT----ELDSSTN-GEVLSLIHL-K-GRVLSSH- 1053 (1306)
Q Consensus 989 ~~~~~l~~l~ghs~~V~~i~-------~~Lasgs~Dg~I~IWd~~~~~----~i~~~H~-~~V~sl~fs-p-d~LaSgs- 1053 (1306)
...+.+..+++|.+.++.+. ..+.+|+.||+|++||++... .....|. .+..|++.+ . +.+++|.
T Consensus 58 ~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE 137 (376)
T KOG1188|consen 58 GTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTE 137 (376)
T ss_pred cchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccc
Confidence 33456788888877776554 789999999999999998522 2233444 567777775 2 3666664
Q ss_pred ---CCCcEEEEeCCCCccceEEE-EcccCccEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCc--eeEEEeecCCCCeEE
Q 000744 1054 ---SDGTIKMWDSGKRVLRLIQE-VREHTRAVTCLYVPS-SGDKLYSGSLDKTIRVWSIKPEE--IHCLQVHNVKEAVHE 1126 (1306)
Q Consensus 1054 ---~Dg~I~vWd~~t~~~~~i~~-l~~H~~~V~sl~fsp-dg~~L~Sgs~DgtI~VWdi~~~~--~~~i~~~~~~~~V~s 1126 (1306)
.|-.|.+||++..+ +++.. ...|.+.|+++.|+| +.++|+|||.||.|.|+|++... -....++.+...|..
T Consensus 138 ~~~s~A~v~lwDvR~~q-q~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~ 216 (376)
T KOG1188|consen 138 LTRSDASVVLWDVRSEQ-QLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHL 216 (376)
T ss_pred cccCceEEEEEEecccc-chhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeee
Confidence 36789999998763 32444 457999999999999 67899999999999999998754 234455667788999
Q ss_pred EEe--C--CcEEEEEcCCCeEEEEEecC-CEEEecc---------------CCCeEEEEEe-CCEEEEEEC-CCcEEEEE
Q 000744 1127 LTA--N--AEIACFVSPATGVKVYNWSG-AIKHINF---------------NKHVKSLVMT-GDKLYCGCS-GYSIQEVD 1184 (1306)
Q Consensus 1127 l~~--~--~~~v~~s~dg~~I~i~~~~~-~~~l~~~---------------~~~V~sl~~s-~d~L~sgs~-Dg~I~iwD 1184 (1306)
+.| . ..+.+.+..+. ..+|.++. ....+-. ..-|.+..-. .+.++.++. -+...++-
T Consensus 217 igw~~~~ykrI~clTH~Et-f~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~ 295 (376)
T KOG1188|consen 217 IGWLSKKYKRIMCLTHMET-FAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFP 295 (376)
T ss_pred eeeecCCcceEEEEEccCc-eeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEE
Confidence 998 2 25677777776 88888873 2222211 1112221111 123444333 56666665
Q ss_pred CCCCceeEEecCcccccC-Cc-cEEEEEEeCCcEEEEEEecCCCEEEEEEC
Q 000744 1185 LGNLTSTTFYAGTKKLLG-KQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSI 1233 (1306)
Q Consensus 1185 l~~~~~~~~~~~~~~l~g-h~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~ 1233 (1306)
+..........+...+.| |. -|+++.|.-.+.++.+|+.|| .+.+|..
T Consensus 296 ~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG-~l~~Wk~ 345 (376)
T KOG1188|consen 296 LVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDG-LLQAWKV 345 (376)
T ss_pred eeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCc-eEEEEec
Confidence 443222222223334555 44 788999985555666777888 8999985
No 188
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=4.2e-11 Score=145.16 Aligned_cols=294 Identities=13% Similarity=0.107 Sum_probs=194.3
Q ss_pred cccccccccEEEEEeCCCcEEEEeCCCc------eEEcccCCCCEEEEEEeCC--EEEEEECCCcEEEEeCCC--Cccce
Q 000744 1001 SAVVTDIQKALMNLSSVNATELWHCNEV------TELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDSGK--RVLRL 1070 (1306)
Q Consensus 1001 s~~V~~i~~~Lasgs~Dg~I~IWd~~~~------~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t--~~~~~ 1070 (1306)
..++.+...-+..---+..+.+|+..+. ..+...|.-.++|.++||+ ++++|..||.|.+|.-.. +.-..
T Consensus 164 ~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t 243 (792)
T KOG1963|consen 164 KSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSET 243 (792)
T ss_pred ccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccccc
Confidence 4444444422333333467888887652 2233457777999999995 999999999999997543 32245
Q ss_pred EEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecC
Q 000744 1071 IQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSG 1150 (1306)
Q Consensus 1071 i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~ 1150 (1306)
.+.+.-|...|+++.|+++|.+|+|||..|.+.+|.+.+++.+-+... ..+|..+. ++||+....+...|.
T Consensus 244 ~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRL--gs~I~~i~-------vS~ds~~~sl~~~DN 314 (792)
T KOG1963|consen 244 CTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRL--GSPILHIV-------VSPDSDLYSLVLEDN 314 (792)
T ss_pred ceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCccccccc--CCeeEEEE-------EcCCCCeEEEEecCc
Confidence 567788999999999999999999999999999999999864444444 38899988 555555444444444
Q ss_pred CEEEec-----------------------cCCCeEEEEEeC--CEEEEEECCCcEEEEECCCCceeEEecCc--ccccCC
Q 000744 1151 AIKHIN-----------------------FNKHVKSLVMTG--DKLYCGCSGYSIQEVDLGNLTSTTFYAGT--KKLLGK 1203 (1306)
Q Consensus 1151 ~~~l~~-----------------------~~~~V~sl~~s~--d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~--~~l~gh 1203 (1306)
.+.++. ..+-.+.++++| +.++-.+..|.|++||+.+...+..+... ....+.
T Consensus 315 qI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~ 394 (792)
T KOG1963|consen 315 QIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGD 394 (792)
T ss_pred eEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCc
Confidence 433321 123355667775 46788889999999999987766544311 111122
Q ss_pred ---c-cEEEEEEeCCcEEEEEEec--------C-CCEEEEEECCCCceEEEE----e--cCCCEEEEEEcC-c---EEEE
Q 000744 1204 ---Q-TIHSLHMHNGLLFAGGSSV--------D-GTAGKVFSISSKTAVGSF----T--TGIDIQHLAVNS-D---FIFT 1260 (1306)
Q Consensus 1204 ---~-~I~sl~~s~~~~llas~s~--------D-g~~I~IWD~~t~~~l~~l----~--~~~~V~sla~sp-d---~Las 1260 (1306)
. .++++..+-.+.++++... | ...+|+|-......-..+ . |+..+...++.+ . ..++
T Consensus 395 ~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vt 474 (792)
T KOG1963|consen 395 VNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVT 474 (792)
T ss_pred ceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEE
Confidence 2 6677777655777777521 1 126889977654433332 2 444444444433 2 8999
Q ss_pred EECCCcEEEEECCC------CeE--EEEEecccCCCCCCCeEEEEEcCCCCccC
Q 000744 1261 ATKCGTIEVWLKER------VTR--VASVKANNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1261 gs~Dg~I~IWd~~t------g~~--l~~l~~~~~~~~~~~V~slafSpdg~~La 1306 (1306)
++.||.++||-+.. +.. .....+ .+|..++++.+|+.||..|+
T Consensus 475 a~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~---sy~k~~i~a~~fs~dGslla 525 (792)
T KOG1963|consen 475 ASVDGDFKIWVFTDDSNIYKKSSNWTCKAIG---SYHKTPITALCFSQDGSLLA 525 (792)
T ss_pred eccCCeEEEEEEecccccCcCccceEEeeee---ccccCcccchhhcCCCcEEE
Confidence 99999999998832 211 111221 24668999999999998774
No 189
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.42 E-value=4.9e-12 Score=146.65 Aligned_cols=241 Identities=14% Similarity=0.173 Sum_probs=174.4
Q ss_pred cEEEEEeCCCcEEEEeCCC--ceEEcccCCCCEEEEEEeCC--EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEE
Q 000744 1009 KALMNLSSVNATELWHCNE--VTELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCL 1084 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~--~~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl 1084 (1306)
+++..++ ..+.+||..+ ......+|+..|.|++|+.| .++||+.|..|.+|+.+-. -+..+ .|.+.|.|+
T Consensus 26 qL~lAAg--~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE---G~LkY-SH~D~IQCM 99 (1081)
T KOG1538|consen 26 QLILAAG--SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE---GILKY-SHNDAIQCM 99 (1081)
T ss_pred eEEEecC--CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccc---ceeee-ccCCeeeEe
Confidence 4444443 4799999985 56677899999999999986 9999999999999997643 23333 699999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEe---------
Q 000744 1085 YVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHI--------- 1155 (1306)
Q Consensus 1085 ~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~--------- 1155 (1306)
.|+|-...++|++... .-+|..... .+..+.....+.+.+ |..||+++.++-.+|++.+.
T Consensus 100 sFNP~~h~LasCsLsd-FglWS~~qK---~V~K~kss~R~~~Cs-------WtnDGqylalG~~nGTIsiRNk~gEek~~ 168 (1081)
T KOG1538|consen 100 SFNPITHQLASCSLSD-FGLWSPEQK---SVSKHKSSSRIICCS-------WTNDGQYLALGMFNGTISIRNKNGEEKVK 168 (1081)
T ss_pred ecCchHHHhhhcchhh-ccccChhhh---hHHhhhhheeEEEee-------ecCCCcEEEEeccCceEEeecCCCCcceE
Confidence 9999999999998753 578987764 333444446777777 55555555555555544332
Q ss_pred -----ccCCCeEEEEEeCC-------EEEEEECCCcEEEEECCCCceeEEecCcccccCCccEEEEEEeCCcEEEEEEec
Q 000744 1156 -----NFNKHVKSLVMTGD-------KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLLFAGGSSV 1223 (1306)
Q Consensus 1156 -----~~~~~V~sl~~s~d-------~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~s~ 1223 (1306)
+.+++|.+++|+|+ .+++.....++.+|.+.....-+ .+.+ +. .-.|+.+-+++.|+..|+.
T Consensus 169 I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk----~r~L-~F-dP~CisYf~NGEy~LiGGs 242 (1081)
T KOG1538|consen 169 IERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGK----DRAL-NF-DPCCISYFTNGEYILLGGS 242 (1081)
T ss_pred EeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecc----cccC-CC-CchhheeccCCcEEEEccC
Confidence 25789999999964 57888888888888776432211 0111 11 3456777666655555556
Q ss_pred CCCEEEEEECCCCceEEEEec-CCCEEEEEEcCc--EEEEEECCCcEEEEECCC
Q 000744 1224 DGTAGKVFSISSKTAVGSFTT-GIDIQHLAVNSD--FIFTATKCGTIEVWLKER 1274 (1306)
Q Consensus 1224 Dg~~I~IWD~~t~~~l~~l~~-~~~V~sla~spd--~Lasgs~Dg~I~IWd~~t 1274 (1306)
|+ .+++|. +.|-.+.++.. ..+|+.++..|+ +++.|+.||+|-.|++-.
T Consensus 243 dk-~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 243 DK-QLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred CC-ceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 87 688886 66777777764 567999999999 999999999999998753
No 190
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.40 E-value=3.7e-10 Score=132.89 Aligned_cols=262 Identities=13% Similarity=0.152 Sum_probs=161.8
Q ss_pred EEEEeCCCcEEEEeCCCc---eEEc-ccCCCCEEEEEEeCC--EEEEE-ECCCcEEEEeCC-CCccceEEEEcccCccEE
Q 000744 1011 LMNLSSVNATELWHCNEV---TELD-SSTNGEVLSLIHLKG--RVLSS-HSDGTIKMWDSG-KRVLRLIQEVREHTRAVT 1082 (1306)
Q Consensus 1011 Lasgs~Dg~I~IWd~~~~---~~i~-~~H~~~V~sl~fspd--~LaSg-s~Dg~I~vWd~~-t~~~~~i~~l~~H~~~V~ 1082 (1306)
+++...|+.|.+||+.+. ..+. ..+.+....++++|+ +|+++ ..++.|.+|++. ++....+.... ..+...
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~ 83 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPT 83 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCce
Confidence 445577899999998531 1111 123466778999986 66655 458999999996 34223333332 334567
Q ss_pred EEEEcCCCCEEEEEeC-CCcEEEEEcCCCc--eeEEEeecCCCCeEEEEe--CCcEE-EEEcCCCeEEEEEecCCEEE--
Q 000744 1083 CLYVPSSGDKLYSGSL-DKTIRVWSIKPEE--IHCLQVHNVKEAVHELTA--NAEIA-CFVSPATGVKVYNWSGAIKH-- 1154 (1306)
Q Consensus 1083 sl~fspdg~~L~Sgs~-DgtI~VWdi~~~~--~~~i~~~~~~~~V~sl~~--~~~~v-~~s~dg~~I~i~~~~~~~~l-- 1154 (1306)
.+.|+|+++++++++. ++.|.+|++.+.. ...+....+......+.+ ++..+ +.......|.+|+++....+
T Consensus 84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 8999999999888775 8899999997432 122332222234556665 23333 33444466888888642111
Q ss_pred -------eccCCCeEEEEEeCC--EEEEEEC-CCcEEEEECCC--Cce--eEEecCc-ccccCCccEEEEEEeCCcEEEE
Q 000744 1155 -------INFNKHVKSLVMTGD--KLYCGCS-GYSIQEVDLGN--LTS--TTFYAGT-KKLLGKQTIHSLHMHNGLLFAG 1219 (1306)
Q Consensus 1155 -------~~~~~~V~sl~~s~d--~L~sgs~-Dg~I~iwDl~~--~~~--~~~~~~~-~~l~gh~~I~sl~~s~~~~lla 1219 (1306)
.........+.|+|+ ++++++. +++|.+||+.. ++. +..+... ....+......+.++|++.++.
T Consensus 164 ~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ly 243 (330)
T PRK11028 164 QEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLY 243 (330)
T ss_pred cCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEE
Confidence 112345678999987 6766665 89999999973 332 2222111 0011111334688898877666
Q ss_pred EEecCCCEEEEEECCCCc----eEEEEecCCCEEEEEEcCc--EEEEEE-CCCcEEEEECC
Q 000744 1220 GSSVDGTAGKVFSISSKT----AVGSFTTGIDIQHLAVNSD--FIFTAT-KCGTIEVWLKE 1273 (1306)
Q Consensus 1220 s~s~Dg~~I~IWD~~t~~----~l~~l~~~~~V~sla~spd--~Lasgs-~Dg~I~IWd~~ 1273 (1306)
.+....++|.+|++.+.. .+..+........+.++|+ +|++++ .+++|.+|+++
T Consensus 244 v~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 244 ACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 665444589999986533 2333332334668899998 666655 48999999874
No 191
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.40 E-value=8.1e-12 Score=133.50 Aligned_cols=209 Identities=13% Similarity=0.117 Sum_probs=151.9
Q ss_pred cEEEEEeCCCcEEEEeCCC------ceE-----EcccCCCCEEEEEEeC---CEEEEEECCCcEEEEeCCCCc-cceEEE
Q 000744 1009 KALMNLSSVNATELWHCNE------VTE-----LDSSTNGEVLSLIHLK---GRVLSSHSDGTIKMWDSGKRV-LRLIQE 1073 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~------~~~-----i~~~H~~~V~sl~fsp---d~LaSgs~Dg~I~vWd~~t~~-~~~i~~ 1073 (1306)
++|||++. .+|+|.+.. .+. ....+..++++..|+. ++|.++|-|-+..|||++++. ......
T Consensus 114 dlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQ 191 (364)
T KOG0290|consen 114 DLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQ 191 (364)
T ss_pred chhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeE
Confidence 67877665 899999862 111 1234678899999984 699999999999999999872 123455
Q ss_pred EcccCccEEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCceeEEE-eec-CCCCeEEEEe----CCcEEEEEcCCCeEEEE
Q 000744 1074 VREHTRAVTCLYVPSSG-DKLYSGSLDKTIRVWSIKPEEIHCLQ-VHN-VKEAVHELTA----NAEIACFVSPATGVKVY 1146 (1306)
Q Consensus 1074 l~~H~~~V~sl~fspdg-~~L~Sgs~DgtI~VWdi~~~~~~~i~-~~~-~~~~V~sl~~----~~~~v~~s~dg~~I~i~ 1146 (1306)
+-.|.+.|..|+|...+ +.|+|.|.||+||++|++..+-..+. .-+ ...+..-++| ...++.|.-|+..|.+.
T Consensus 192 LIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iL 271 (364)
T KOG0290|consen 192 LIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVIL 271 (364)
T ss_pred EEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEE
Confidence 66899999999999855 58999999999999999987533322 222 2467777887 34577888899999999
Q ss_pred EecC----CEEEeccCCCeEEEEEeCC---EEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEe---CCc
Q 000744 1147 NWSG----AIKHINFNKHVKSLVMTGD---KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMH---NGL 1215 (1306)
Q Consensus 1147 ~~~~----~~~l~~~~~~V~sl~~s~d---~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s---~~~ 1215 (1306)
+.+. ...+.+|.+.|+.++|.|. +|.+++.|....+||+.+.-......+.- ..... .|+.+.|+ |+.
T Consensus 272 DiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPil-ay~a~~EVNqi~Ws~~~~Dw 350 (364)
T KOG0290|consen 272 DIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPIL-AYTAGGEVNQIQWSSSQPDW 350 (364)
T ss_pred EecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchh-hhhccceeeeeeecccCCCE
Confidence 9882 2456789999999999965 79999999999999998632211111100 01112 79999997 444
Q ss_pred EEEEE
Q 000744 1216 LFAGG 1220 (1306)
Q Consensus 1216 ~llas 1220 (1306)
.-++.
T Consensus 351 iai~~ 355 (364)
T KOG0290|consen 351 IAICF 355 (364)
T ss_pred EEEEe
Confidence 44433
No 192
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=3.1e-12 Score=143.75 Aligned_cols=198 Identities=18% Similarity=0.212 Sum_probs=140.3
Q ss_pred EEEEEeCC--EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEe
Q 000744 1040 LSLIHLKG--RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQV 1117 (1306)
Q Consensus 1040 ~sl~fspd--~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~ 1117 (1306)
.+++|+.+ .+++|+.||++|||++... ..+.....|.+.|.++.|+|||++|++-+.| ..+||+.+++ .++..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~--~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g--~~~a~ 222 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM--LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTG--AALAR 222 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc--hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccC--chhhh
Confidence 56777764 9999999999999998776 6677778899999999999999999999999 8999999998 22222
Q ss_pred ec---CCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCCEEE-EEECCCcEEEEECCCCceeEE
Q 000744 1118 HN---VKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGDKLY-CGCSGYSIQEVDLGNLTSTTF 1193 (1306)
Q Consensus 1118 ~~---~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~-sgs~Dg~I~iwDl~~~~~~~~ 1193 (1306)
.. .......+. |+.|+.. ... +++ .-...+.|+.||+....--..
T Consensus 223 ~t~~~k~~~~~~cR-------F~~d~~~-----------------~~l-------~laa~~~~~~~v~~~~~~~w~~~~~ 271 (398)
T KOG0771|consen 223 KTPFSKDEMFSSCR-------FSVDNAQ-----------------ETL-------RLAASQFPGGGVRLCDISLWSGSNF 271 (398)
T ss_pred cCCcccchhhhhce-------ecccCCC-----------------ceE-------EEEEecCCCCceeEEEeeeeccccc
Confidence 21 112222222 2322210 000 122 122234455555543221111
Q ss_pred ecCcccccCCccEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEe--cCCCEEEEEEcCc--EEEEEECCCcEEE
Q 000744 1194 YAGTKKLLGKQTIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFT--TGIDIQHLAVNSD--FIFTATKCGTIEV 1269 (1306)
Q Consensus 1194 ~~~~~~l~gh~~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~--~~~~V~sla~spd--~Lasgs~Dg~I~I 1269 (1306)
....+.+..+..|.++++++++.|++-|+.|| .|-|++..+-++++-++ |..-|+.+.|+|| ++++.+.|..+.|
T Consensus 272 l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dG-sVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 272 LRLRKKIKRFKSISSLAVSDDGKFLALGTMDG-SVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAV 350 (398)
T ss_pred cchhhhhhccCcceeEEEcCCCcEEEEeccCC-cEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeE
Confidence 12222334455899999999999999999998 89999999999888887 4556999999999 9999999999988
Q ss_pred EECCC
Q 000744 1270 WLKER 1274 (1306)
Q Consensus 1270 Wd~~t 1274 (1306)
..+.-
T Consensus 351 ~~l~v 355 (398)
T KOG0771|consen 351 TKLAV 355 (398)
T ss_pred EEEee
Confidence 87653
No 193
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=1.8e-12 Score=146.89 Aligned_cols=281 Identities=12% Similarity=0.126 Sum_probs=204.7
Q ss_pred cccccccccccccccc-----cEEEEEeCCCcEEEEeCCCce---EEcccCCCCEEEEEEeCC----EEEEEECCCcEEE
Q 000744 993 TLRKLKKYSAVVTDIQ-----KALMNLSSVNATELWHCNEVT---ELDSSTNGEVLSLIHLKG----RVLSSHSDGTIKM 1060 (1306)
Q Consensus 993 ~l~~l~ghs~~V~~i~-----~~Lasgs~Dg~I~IWd~~~~~---~i~~~H~~~V~sl~fspd----~LaSgs~Dg~I~v 1060 (1306)
...+|.+|.|-|+.+. ..|+|||.|..|.+||+.... ....+|...|..-.|-|. .+++++.||.|++
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 4567889999998887 889999999999999997643 445678888888788773 8999999999998
Q ss_pred EeCC-CCccceEEEEcccCccEEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCce-eEEEeec-CCC---CeEEEEe---C
Q 000744 1061 WDSG-KRVLRLIQEVREHTRAVTCLYVPSS-GDKLYSGSLDKTIRVWSIKPEEI-HCLQVHN-VKE---AVHELTA---N 1130 (1306)
Q Consensus 1061 Wd~~-t~~~~~i~~l~~H~~~V~sl~fspd-g~~L~Sgs~DgtI~VWdi~~~~~-~~i~~~~-~~~---~V~sl~~---~ 1130 (1306)
=.+. ++..+-...+..|.++|.-++.-|+ ...|.|++.|+.+.-.|++++.. ..+.... +.. ...+++. +
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence 8764 4433335566789999999999995 46799999999999999998651 1111111 112 3455555 4
Q ss_pred CcEEEEEcCCCeEEEEEecCCEE-----E----------eccCCCeEEEEEeCC--EEEEEECCCcEEEEECCCCce---
Q 000744 1131 AEIACFVSPATGVKVYNWSGAIK-----H----------INFNKHVKSLVMTGD--KLYCGCSGYSIQEVDLGNLTS--- 1190 (1306)
Q Consensus 1131 ~~~v~~s~dg~~I~i~~~~~~~~-----l----------~~~~~~V~sl~~s~d--~L~sgs~Dg~I~iwDl~~~~~--- 1190 (1306)
....++++...+.++|+.....+ . .+..-.|+++.|+.+ -+++...|-.|++|.-.-+.-
T Consensus 294 t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p 373 (559)
T KOG1334|consen 294 TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEP 373 (559)
T ss_pred ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCC
Confidence 45666677777778887652111 0 123557999999943 588888999999995432211
Q ss_pred -----eEEecCcccccCCc---cEEEEEEe-CCcEEEEEEecCCCEEEEEECCCCceEEEEecC-CCEEEEEEcCc--EE
Q 000744 1191 -----TTFYAGTKKLLGKQ---TIHSLHMH-NGLLFAGGSSVDGTAGKVFSISSKTAVGSFTTG-IDIQHLAVNSD--FI 1258 (1306)
Q Consensus 1191 -----~~~~~~~~~l~gh~---~I~sl~~s-~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~~-~~V~sla~spd--~L 1258 (1306)
...+ .+...+||. .|..+-|- |...|+++|| |.|.|.||+-.+++.+.-+.+. .-|+|+.-+|- .|
T Consensus 374 ~~~s~~~~~-~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGS-DCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvL 451 (559)
T KOG1334|consen 374 DPSSPREQY-VKRVYKGHRNSRTVKGVNFFGPRSEYVVSGS-DCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVL 451 (559)
T ss_pred CCCcchhhc-cchhhcccccccccceeeeccCccceEEecC-ccceEEEEecchhHHHHHhhcccceEeccCCCCCCchh
Confidence 0000 011134554 78888885 8888998886 7779999999999998888752 36899999997 99
Q ss_pred EEEECCCcEEEEECCCC
Q 000744 1259 FTATKCGTIEVWLKERV 1275 (1306)
Q Consensus 1259 asgs~Dg~I~IWd~~tg 1275 (1306)
++++-|.-|+||...+.
T Consensus 452 AsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 452 ASSGIDHDVKIWTPLTA 468 (559)
T ss_pred hccCCccceeeecCCcc
Confidence 99999999999987543
No 194
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.39 E-value=5.6e-11 Score=131.38 Aligned_cols=220 Identities=17% Similarity=0.184 Sum_probs=164.7
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEE--cCCCeEEEEEecCCEEE-
Q 000744 1078 TRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFV--SPATGVKVYNWSGAIKH- 1154 (1306)
Q Consensus 1078 ~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s--~dg~~I~i~~~~~~~~l- 1154 (1306)
...+..+.|+.+...|..|+.||. +++...... ++.........|..+-|+..++.+. .+++.+++.+......+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~-k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~IC 82 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFE-KCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTIC 82 (391)
T ss_pred CcceeeeeeccceeEEEccCCCce-eEEecCchH-HhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEE
Confidence 446777789999999999999985 788876542 2322222334455555644444332 45567888888855443
Q ss_pred -eccCCCeEEEEEeCCEEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeCCc-EEEEEEecCCCEEEEE
Q 000744 1155 -INFNKHVKSLVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGL-LFAGGSSVDGTAGKVF 1231 (1306)
Q Consensus 1155 -~~~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~-~llas~s~Dg~~I~IW 1231 (1306)
......|.+|.++.+.|++.-.+. |+|||+++.+.+.++.. ...+. .+..+.+++++ .++.=++.+.|.|.+|
T Consensus 83 e~~fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t---~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~ 158 (391)
T KOG2110|consen 83 EIFFPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIET---TPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLF 158 (391)
T ss_pred EEecCCceEEEEEccceEEEEEccc-EEEEecccceeehhhhc---cCCCccceEeeccCCCCceEEecCCCCCceEEEE
Confidence 456889999999999888776655 99999999998887652 22233 56666666544 4444455566699999
Q ss_pred ECCCCceEEEEe-cCCCEEEEEEcCc--EEEEEECCCc-EEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCCCccC
Q 000744 1232 SISSKTAVGSFT-TGIDIQHLAVNSD--FIFTATKCGT-IEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1232 D~~t~~~l~~l~-~~~~V~sla~spd--~Lasgs~Dg~-I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~~La 1306 (1306)
|..+-+.+..+. |.+.+-+++|+++ +|||+|+.|+ |||+.+.+|+.+..|.- |..-..|.+++|+||+++|+
T Consensus 159 d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRR---G~~~~~IySL~Fs~ds~~L~ 234 (391)
T KOG2110|consen 159 DTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRR---GTYPVSIYSLSFSPDSQFLA 234 (391)
T ss_pred EcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeC---CceeeEEEEEEECCCCCeEE
Confidence 999999999998 6678999999999 9999999997 59999999999999985 44447899999999999874
No 195
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=2.2e-11 Score=148.22 Aligned_cols=229 Identities=9% Similarity=0.016 Sum_probs=150.9
Q ss_pred CCcEEEEeCCCc-eEEcccCCCCEEEEEEeCC--EEEEEECC---CcEEEEeCCCCccceEEEEcccCccEEEEEEcCCC
Q 000744 1017 VNATELWHCNEV-TELDSSTNGEVLSLIHLKG--RVLSSHSD---GTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSG 1090 (1306)
Q Consensus 1017 Dg~I~IWd~~~~-~~i~~~H~~~V~sl~fspd--~LaSgs~D---g~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg 1090 (1306)
+..|.+||.... ......|...|.+..|+|| .|+.++.+ ..|++||+.++..+.+..+.+|. ..++|+|||
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~---~~~~wSPDG 259 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN---GAPAFSPDG 259 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc---CceeECCCC
Confidence 578999998753 4455678889999999996 77766644 46999999987444455555543 468999999
Q ss_pred CEEEEEe-CCCcEEEE--EcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEe
Q 000744 1091 DKLYSGS-LDKTIRVW--SIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMT 1167 (1306)
Q Consensus 1091 ~~L~Sgs-~DgtI~VW--di~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s 1167 (1306)
+.|+.++ .+|.+.|| |+.+++...+. .+...+.+.. |+|||+
T Consensus 260 ~~La~~~~~~g~~~Iy~~d~~~~~~~~lt--~~~~~~~~~~-------wSpDG~-------------------------- 304 (429)
T PRK01742 260 SRLAFASSKDGVLNIYVMGANGGTPSQLT--SGAGNNTEPS-------WSPDGQ-------------------------- 304 (429)
T ss_pred CEEEEEEecCCcEEEEEEECCCCCeEeec--cCCCCcCCEE-------ECCCCC--------------------------
Confidence 9888764 68877666 55555332222 1223333444 667766
Q ss_pred CCEEE-EEECCCcEEEEECCCC-ceeEEecCcccccCCccEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEecC
Q 000744 1168 GDKLY-CGCSGYSIQEVDLGNL-TSTTFYAGTKKLLGKQTIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFTTG 1245 (1306)
Q Consensus 1168 ~d~L~-sgs~Dg~I~iwDl~~~-~~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~~ 1245 (1306)
.|+ ++..+|..++|++... ...... ++.. .+..|+|++..++..+.++ +.+||+.+++......+
T Consensus 305 --~i~f~s~~~g~~~I~~~~~~~~~~~~l-------~~~~-~~~~~SpDG~~ia~~~~~~--i~~~Dl~~g~~~~lt~~- 371 (429)
T PRK01742 305 --SILFTSDRSGSPQVYRMSASGGGASLV-------GGRG-YSAQISADGKTLVMINGDN--VVKQDLTSGSTEVLSST- 371 (429)
T ss_pred --EEEEEECCCCCceEEEEECCCCCeEEe-------cCCC-CCccCCCCCCEEEEEcCCC--EEEEECCCCCeEEecCC-
Confidence 344 3345677888876532 212211 1112 3467887776665554444 67799998875432222
Q ss_pred CCEEEEEEcCc--EEEEEECCCcEEEEEC--CCCeEEEEEecccCCCCCCCeEEEEEcCC
Q 000744 1246 IDIQHLAVNSD--FIFTATKCGTIEVWLK--ERVTRVASVKANNSGGGHAKITCLGTGVD 1301 (1306)
Q Consensus 1246 ~~V~sla~spd--~Lasgs~Dg~I~IWd~--~tg~~l~~l~~~~~~~~~~~V~slafSpd 1301 (1306)
....++.|+|| +|+.++.+|.+.+|.+ .+|.....+.. |.+.+...+|||-
T Consensus 372 ~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~-----~~g~~~~p~wsp~ 426 (429)
T PRK01742 372 FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPG-----SDGQVKFPAWSPY 426 (429)
T ss_pred CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccC-----CCCCCCCcccCCC
Confidence 23467789999 8888888998888875 35778888864 5567889999985
No 196
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.36 E-value=2.5e-11 Score=131.48 Aligned_cols=247 Identities=13% Similarity=0.165 Sum_probs=171.1
Q ss_pred CEEEEEEeCC--EEEEEECCCcEEEEeCCCCc----------cceEEEEc-ccCccEEEEEEc-------CCCCEEEEEe
Q 000744 1038 EVLSLIHLKG--RVLSSHSDGTIKMWDSGKRV----------LRLIQEVR-EHTRAVTCLYVP-------SSGDKLYSGS 1097 (1306)
Q Consensus 1038 ~V~sl~fspd--~LaSgs~Dg~I~vWd~~t~~----------~~~i~~l~-~H~~~V~sl~fs-------pdg~~L~Sgs 1097 (1306)
-...+.|+|| .|++-+.|..+.+|++.... .....+++ .....|...+|- |+..++++.+
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 3557789997 89999999999999984210 01111111 123467777775 5678999999
Q ss_pred CCCcEEEEEcCCCceeE-EEeecCCCCe---EEEEeCCcEEEEEcCCCe--------EEEEEecCC---EE--------E
Q 000744 1098 LDKTIRVWSIKPEEIHC-LQVHNVKEAV---HELTANAEIACFVSPATG--------VKVYNWSGA---IK--------H 1154 (1306)
Q Consensus 1098 ~DgtI~VWdi~~~~~~~-i~~~~~~~~V---~sl~~~~~~v~~s~dg~~--------I~i~~~~~~---~~--------l 1154 (1306)
.|.-|++||.-+|+.++ ...++|.+.+ .++. |++||.+ |++++.... .. -
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~-------Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k 203 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQ-------FSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGK 203 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEE-------ecCCCCeEeecccceEEEeeccCCCCCCcchhhhhccc
Confidence 99999999999998544 3445554444 4555 5555554 455555311 00 1
Q ss_pred eccCCCeEEEEEeCC---EEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeC-CcEEEEEEecCCCEEE
Q 000744 1155 INFNKHVKSLVMTGD---KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHN-GLLFAGGSSVDGTAGK 1229 (1306)
Q Consensus 1155 ~~~~~~V~sl~~s~d---~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~-~~~llas~s~Dg~~I~ 1229 (1306)
.+..+-|.|++|+|- .+++|+...++-||.-..+.++.. +.||. .|+.+.|.+ ++.+.+++-.|. .|.
T Consensus 204 ~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~l------lggh~gGvThL~~~edGn~lfsGaRk~d-kIl 276 (406)
T KOG2919|consen 204 FGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQL------LGGHGGGVTHLQWCEDGNKLFSGARKDD-KIL 276 (406)
T ss_pred ccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceee------ecccCCCeeeEEeccCcCeecccccCCC-eEE
Confidence 123567899999965 589999999999998888888774 44677 999999994 455555555566 799
Q ss_pred EEECCC-CceEEEEecCCC--EEEEEE--cCc--EEEEEECCCcEEEEECCC-CeEEEEEecccCCCCCCCeEEEEEcCC
Q 000744 1230 VFSISS-KTAVGSFTTGID--IQHLAV--NSD--FIFTATKCGTIEVWLKER-VTRVASVKANNSGGGHAKITCLGTGVD 1301 (1306)
Q Consensus 1230 IWD~~t-~~~l~~l~~~~~--V~sla~--spd--~Lasgs~Dg~I~IWd~~t-g~~l~~l~~~~~~~~~~~V~slafSpd 1301 (1306)
.||++. +.++..+..|.. -..|-| .|+ +|++|+.||.|++||+++ |+.+..+. .+.+.|+.++++|-
T Consensus 277 ~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~-----~~sd~vNgvslnP~ 351 (406)
T KOG2919|consen 277 CWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTG-----NYSDTVNGVSLNPI 351 (406)
T ss_pred EEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccc-----cccccccceecCcc
Confidence 999976 556666663322 233444 444 999999999999999998 77566554 36678899999886
Q ss_pred CC
Q 000744 1302 GH 1303 (1306)
Q Consensus 1302 g~ 1303 (1306)
=.
T Consensus 352 mp 353 (406)
T KOG2919|consen 352 MP 353 (406)
T ss_pred cc
Confidence 33
No 197
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.35 E-value=1.2e-10 Score=144.43 Aligned_cols=251 Identities=15% Similarity=0.139 Sum_probs=171.8
Q ss_pred EeCCC-ceEEcccCCCCEEEEEEeCC---EEEEEECCCcEEEEeCCC-----CccceEEEEcccCccEEEEEEcCCCCEE
Q 000744 1023 WHCNE-VTELDSSTNGEVLSLIHLKG---RVLSSHSDGTIKMWDSGK-----RVLRLIQEVREHTRAVTCLYVPSSGDKL 1093 (1306)
Q Consensus 1023 Wd~~~-~~~i~~~H~~~V~sl~fspd---~LaSgs~Dg~I~vWd~~t-----~~~~~i~~l~~H~~~V~sl~fspdg~~L 1093 (1306)
|+.++ .......|...|..++.+++ +++|||.||+|++||... +......++.--...+.++.+.+.++.+
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence 66665 33445678888999988863 999999999999999853 2223444554456789999999999999
Q ss_pred EEEeCCCcEEEEEcCCCc---eeEEEe--e--cCCCCeEEEE-e----CCcEEEEEcCCCeEEEEEecCCEEEec-----
Q 000744 1094 YSGSLDKTIRVWSIKPEE---IHCLQV--H--NVKEAVHELT-A----NAEIACFVSPATGVKVYNWSGAIKHIN----- 1156 (1306)
Q Consensus 1094 ~Sgs~DgtI~VWdi~~~~---~~~i~~--~--~~~~~V~sl~-~----~~~~v~~s~dg~~I~i~~~~~~~~l~~----- 1156 (1306)
+.|+.||.|++.++...+ ..+.+. . ...+.+.++. | ....+.+..+-..+..|+.......|.
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~ 1193 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL 1193 (1431)
T ss_pred EEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc
Confidence 999999999999998732 122221 1 1234455444 2 223555666666677887775544443
Q ss_pred cCCCeEEEEEeCC--EEEEEECCCcEEEEECCCCceeEEecCcccccCCccEEEEEEe---C-CcEEEEEEecCCCEEEE
Q 000744 1157 FNKHVKSLVMTGD--KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMH---N-GLLFAGGSSVDGTAGKV 1230 (1306)
Q Consensus 1157 ~~~~V~sl~~s~d--~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s---~-~~~llas~s~Dg~~I~I 1230 (1306)
..+.|++++.++. ++++|+..|.+.+||++-+.++..+. ...+.+|+.+..+ + +...+++++...+.|.+
T Consensus 1194 ~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~----~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~ 1269 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWE----HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVST 1269 (1431)
T ss_pred cccceeEEEecCCceEEEEecCCceEEEEEeecCceeeccc----CcccCCcceEEeeccCCCCceEEEecccCCCceee
Confidence 3578999999954 89999999999999999888877543 1122278877776 2 13344444323348999
Q ss_pred EECCCCceEEEEecCCC---------------------EEEEEEcCc-EEEEEECCCcEEEEECCCCeE
Q 000744 1231 FSISSKTAVGSFTTGID---------------------IQHLAVNSD-FIFTATKCGTIEVWLKERVTR 1277 (1306)
Q Consensus 1231 WD~~t~~~l~~l~~~~~---------------------V~sla~spd-~Lasgs~Dg~I~IWd~~tg~~ 1277 (1306)
|++.+|.+...+....+ +.+.--.++ ++++|+.|+.|+.||......
T Consensus 1270 wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1270 WNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred eecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccc
Confidence 99999987766642211 222222333 999999999999999876543
No 198
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.34 E-value=5.8e-12 Score=145.40 Aligned_cols=174 Identities=14% Similarity=0.178 Sum_probs=130.3
Q ss_pred cEEEEEeCCCcEEEEeCC---------CceEEcccCCCCEEEEEEeC---CEEEEEECCCcEEEEeCCCCccceEEEEcc
Q 000744 1009 KALMNLSSVNATELWHCN---------EVTELDSSTNGEVLSLIHLK---GRVLSSHSDGTIKMWDSGKRVLRLIQEVRE 1076 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~---------~~~~i~~~H~~~V~sl~fsp---d~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~ 1076 (1306)
+.||.++.||.|++|.+. +...+...|...|+++.|+| |.|+++++|-+|++||+.++ +....+.+
T Consensus 641 ~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~--~~~~~l~g 718 (1012)
T KOG1445|consen 641 ERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANA--KLYSRLVG 718 (1012)
T ss_pred HHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhh--hhhheecc
Confidence 779999999999999985 35667889999999999999 79999999999999999998 77788999
Q ss_pred cCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCC----E
Q 000744 1077 HTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGA----I 1152 (1306)
Q Consensus 1077 H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~----~ 1152 (1306)
|++.|..++|||+|+.+++.+.||+|+||+.+.++....... ++|-. .+.-+.|..||+.|.+..++.. +
T Consensus 719 HtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~---gpvgt---RgARi~wacdgr~viv~Gfdk~SeRQv 792 (1012)
T KOG1445|consen 719 HTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGK---GPVGT---RGARILWACDGRIVIVVGFDKSSERQV 792 (1012)
T ss_pred CcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCC---CCccC---cceeEEEEecCcEEEEecccccchhhh
Confidence 999999999999999999999999999999998752222221 22211 1233447778887777666632 2
Q ss_pred EEecc------CCCeEEEEEe---------CC---EEEEEECCCcEEEEECCCCce
Q 000744 1153 KHINF------NKHVKSLVMT---------GD---KLYCGCSGYSIQEVDLGNLTS 1190 (1306)
Q Consensus 1153 ~l~~~------~~~V~sl~~s---------~d---~L~sgs~Dg~I~iwDl~~~~~ 1190 (1306)
.+++. .-.+..+... .| .+++|-.|..|.+|.+-....
T Consensus 793 ~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esP 848 (1012)
T KOG1445|consen 793 QMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESP 848 (1012)
T ss_pred hhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCCCc
Confidence 22221 1112222222 22 478999999999999865443
No 199
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.34 E-value=5.2e-11 Score=148.20 Aligned_cols=338 Identities=17% Similarity=0.191 Sum_probs=233.4
Q ss_pred HHHhChhhHHHhhcCCCCHHHHHHHHHHHHHHhhhcCCCcccccccccccchHHHHHHHhcCCcHHHHHHHHHHHHHHhc
Q 000744 485 TIINGLKPYVTCLCTSENLQECETAVLAIARLWKESKGDPGVHAYLLKPTIINGFAEILSASLSREVLRTSVYILSELMV 564 (1306)
Q Consensus 485 ~~~~~~~~~l~~Ll~s~~~~~~e~Av~~i~~L~~~~~~~~~~~~~i~~~~~I~~Lv~~L~~~~~~~~~e~Av~~L~~L~s 564 (1306)
....+++..|+.++.+++.+....++.-|.+|+...+|+ ..|++.|+|+.|+.+|.++ +.+.++.|+.+|+|| |
T Consensus 286 M~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK----~~m~~~giV~kL~kLl~s~-~~~l~~~aLrlL~NL-S 359 (708)
T PF05804_consen 286 MVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENK----DEMAESGIVEKLLKLLPSE-NEDLVNVALRLLFNL-S 359 (708)
T ss_pred HHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH----HHHHHcCCHHHHHHHhcCC-CHHHHHHHHHHHHHh-C
Confidence 467788899999999999999999999999999988654 6899999999999999988 788999999999999 8
Q ss_pred cCccccccccccCCchHHHHHHHhcCh--HHHHHHHhccCC---CHHHHhhCCchHHHHHHhhcCCccccchhcccCchH
Q 000744 565 ADESVGDILTSVDSDFDCLAALLKNGL--GEAAVLIYQLRP---AFAQLSAHEFIPSLVQLVLNKTEEFDELQFVMEPKD 639 (1306)
Q Consensus 565 ~~~~~~~~I~~~~~~i~~Lv~lLk~g~--~~Aa~aL~~L~~---~~~~i~~~g~i~~Lv~ll~~g~~~~~~~~~~~~~k~ 639 (1306)
.|+++|..|.+ .|.||.||.+|+++. .-|...||+||. ++..+...++||.|+++|-++++..- +-
T Consensus 360 fd~~~R~~mV~-~GlIPkLv~LL~d~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v--------~~ 430 (708)
T PF05804_consen 360 FDPELRSQMVS-LGLIPKLVELLKDPNFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEV--------QL 430 (708)
T ss_pred cCHHHHHHHHH-CCCcHHHHHHhCCCchHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccc--------cH
Confidence 88889999998 999999999999876 559999999998 88889999999999999888763221 11
Q ss_pred HHHHHHHHHHccCCCCCchhhhhHhhcCCCHHHHHhhc-CChhHHHHHHHHHHhhhhccchhHHHHHHhcccchhhhhhh
Q 000744 640 AAIEMLEQILMGGDKKSRSITALSLISANGIPALIKCL-DRVEVRRSIVSILLCCMHADKSCKTLIAKRIELSHVLDLFH 718 (1306)
Q Consensus 640 aa~~lL~~l~~~~~~~~~~~n~~~i~~~g~i~~Lv~~l-~~~~~~~~~~~~L~~~~~~~~~~r~~i~~~~~~~~l~~ll~ 718 (1306)
.+++++-+| +.++.|+..+.+.||++.|++.. ...+ . -.+-++-+..+.++..+..... -+.+|+.++.
T Consensus 431 eliaL~iNL------a~~~rnaqlm~~g~gL~~L~~ra~~~~D-~-lLlKlIRNiS~h~~~~k~~f~~--~i~~L~~~v~ 500 (708)
T PF05804_consen 431 ELIALLINL------ALNKRNAQLMCEGNGLQSLMKRALKTRD-P-LLLKLIRNISQHDGPLKELFVD--FIGDLAKIVS 500 (708)
T ss_pred HHHHHHHHH------hcCHHHHHHHHhcCcHHHHHHHHHhccc-H-HHHHHHHHHHhcCchHHHHHHH--HHHHHHHHhh
Confidence 345555444 67789999999999999999998 3222 1 1223333444555566665544 4678888877
Q ss_pred cCCch-hHhHHHHHHHHHHhcchhhhHHHHHHHhhhcCCcchHHHHHHHhhcCC-CcchhhHHHHHHhhhcccCCccccc
Q 000744 719 DGNDS-VRGICINFLSELVLLNRRTFSNQILQVIRDEGSFSTMHTFLVYLQMAP-MEQQPATASLLLQLDLLVEPRKMSM 796 (1306)
Q Consensus 719 ~g~~~-~k~~a~~~L~~L~~~~~~~~~~~~l~~i~~~g~~~~m~~ll~~l~~~~-~~~~~~~A~~l~~l~~l~~~~~~~~ 796 (1306)
.+... -.-.++..|.+|...+- ... +-+.+.+-++.++.+| +.+. .++-.+-++++...-...+--...+
T Consensus 501 ~~~~ee~~vE~LGiLaNL~~~~l--d~~---~ll~~~~llp~L~~~L---~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL 572 (708)
T PF05804_consen 501 SGDSEEFVVECLGILANLTIPDL--DWA---QLLQEYNLLPWLKDLL---KPGASEDDLLLEVVILLGTLASDPECAPLL 572 (708)
T ss_pred cCCcHHHHHHHHHHHHhcccCCc--CHH---HHHHhCCHHHHHHHHh---CCCCCChHHHHHHHHHHHHHHCCHHHHHHH
Confidence 66432 25555555555543221 112 2223445555544443 3332 2223333333333222222234456
Q ss_pred cHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHhccceeecCCchhhHHHHHHhhCCCcccccccccc
Q 000744 797 YREEAVEALIEALRRKDFP-NSQMMALDALLSLTGRFTFSGKSYTEALLLKIAGFDQPYNALMKPE 861 (1306)
Q Consensus 797 ~reeai~~l~~~l~~~~~~-~~q~~aa~~l~~l~g~~s~~g~~~~~~~l~~~~g~~~~~~~~~~~~ 861 (1306)
.+.+-+++|++.|..+.-+ ....+...++..+--| +-|+.-+++..+...-.-..|..+
T Consensus 573 ~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h------~~tr~~ll~~~~~~~ylidL~~d~ 632 (708)
T PF05804_consen 573 AKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFH------EETREVLLKETEIPAYLIDLMHDK 632 (708)
T ss_pred HhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcC------hHHHHHHHhccchHHHHHHHhcCC
Confidence 6788999999999888643 5555556666555333 346777777777654444454433
No 200
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=1.9e-10 Score=135.94 Aligned_cols=331 Identities=15% Similarity=0.174 Sum_probs=254.9
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHhhhcCCCcccccccccccchHHHHHHHhcCCcHHHHHHHHHHHHHHhccCcccccc
Q 000744 493 YVTCLCTSENLQECETAVLAIARLWKESKGDPGVHAYLLKPTIINGFAEILSASLSREVLRTSVYILSELMVADESVGDI 572 (1306)
Q Consensus 493 ~l~~Ll~s~~~~~~e~Av~~i~~L~~~~~~~~~~~~~i~~~~~I~~Lv~~L~~~~~~~~~e~Av~~L~~L~s~~~~~~~~ 572 (1306)
.....+.|++...|..|+.+++.|.....+ +.+.-.|.. |+|+.||+.|....++..|..|+-+|.|+++...+.-+.
T Consensus 70 ~~~~~~~S~~~~~q~~a~~~~rkllS~~~~-ppi~~vi~~-G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 70 LMLAALYSDDPQQQLTATQAFRKLLSKERN-PPIDEVIQS-GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHccCCC-CCHHHHHHc-CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 344457788999999999999999887776 555555555 999999999998868999999999999999988877777
Q ss_pred ccccCCchHHHHHHHhcCh----HHHHHHHhccCC----CHHHHhhCCchHHHHHHhhcCCccccchhcccCchHHHHHH
Q 000744 573 LTSVDSDFDCLAALLKNGL----GEAAVLIYQLRP----AFAQLSAHEFIPSLVQLVLNKTEEFDELQFVMEPKDAAIEM 644 (1306)
Q Consensus 573 I~~~~~~i~~Lv~lLk~g~----~~Aa~aL~~L~~----~~~~i~~~g~i~~Lv~ll~~g~~~~~~~~~~~~~k~aa~~l 644 (1306)
+.+ +|++|.|+.||.+.. +.|+=||-|..- -+--+...|++++|+.++..... .+-.--++..
T Consensus 148 vv~-agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~--------~~~lRn~tW~ 218 (514)
T KOG0166|consen 148 VVD-AGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDK--------LSMLRNATWT 218 (514)
T ss_pred ccc-CCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccc--------hHHHHHHHHH
Confidence 776 999999999999986 789999999944 55567789999999999998762 1112346777
Q ss_pred HHHHHccCCCCCchhhhhHhhcCCCHHHHHhhc--CChhHHHHHHHHHHhhhhccchhHHHHHHhcccchhhhhhhcCCc
Q 000744 645 LEQILMGGDKKSRSITALSLISANGIPALIKCL--DRVEVRRSIVSILLCCMHADKSCKTLIAKRIELSHVLDLFHDGND 722 (1306)
Q Consensus 645 L~~l~~~~~~~~~~~n~~~i~~~g~i~~Lv~~l--~~~~~~~~~~~~L~~~~~~~~~~r~~i~~~~~~~~l~~ll~~g~~ 722 (1306)
|.+|-.+.+-...-++ -..++|+|..+| ...+....|..+|.-+.......-.++.+.|.+|.|++||...+.
T Consensus 219 LsNlcrgk~P~P~~~~-----v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~ 293 (514)
T KOG0166|consen 219 LSNLCRGKNPSPPFDV-----VAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSP 293 (514)
T ss_pred HHHHHcCCCCCCcHHH-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCc
Confidence 8888766542222222 234678899998 566666777777777777777788899999999999999998888
Q ss_pred hhHhHHHHHHHHHHhcchhhhHHHHHHHhhhcCCcchHHHHHHHhhcCCCc-chhhHHHHHHhhhcccCC-ccccccHHH
Q 000744 723 SVRGICINFLSELVLLNRRTFSNQILQVIRDEGSFSTMHTFLVYLQMAPME-QQPATASLLLQLDLLVEP-RKMSMYREE 800 (1306)
Q Consensus 723 ~~k~~a~~~L~~L~~~~~~~~~~~~l~~i~~~g~~~~m~~ll~~l~~~~~~-~~~~~A~~l~~l~~l~~~-~~~~~~ree 800 (1306)
...--|++++-.++ +.....-+.+.+-|+++. |..+|...+.+ .+..|+=.+.+.-. +.+ ....+.-.+
T Consensus 294 ~v~~PaLRaiGNIv-----tG~d~QTq~vi~~~~L~~---l~~ll~~s~~~~ikkEAcW~iSNItA-G~~~qiqaVida~ 364 (514)
T KOG0166|consen 294 KVVTPALRAIGNIV-----TGSDEQTQVVINSGALPV---LSNLLSSSPKESIKKEACWTISNITA-GNQEQIQAVIDAN 364 (514)
T ss_pred ccccHHHhhcccee-----eccHHHHHHHHhcChHHH---HHHHhccCcchhHHHHHHHHHHHhhc-CCHHHHHHHHHcc
Confidence 88877777776654 444556677888888887 88888878877 45557777777666 555 334566778
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHhccceeecCCchhhHHHHHHhhCCCccc
Q 000744 801 AVEALIEALRRKDFPNSQMMALDALLSLTGRFTFSGKSYTEALLLKIAGFDQPY 854 (1306)
Q Consensus 801 ai~~l~~~l~~~~~~~~q~~aa~~l~~l~g~~s~~g~~~~~~~l~~~~g~~~~~ 854 (1306)
-++.|+..|..+++ ..|+.||-|+.|+ ..+|.+=-.-.|++++ +-++.
T Consensus 365 l~p~Li~~l~~~ef-~~rKEAawaIsN~----ts~g~~~qi~yLv~~g-iI~pl 412 (514)
T KOG0166|consen 365 LIPVLINLLQTAEF-DIRKEAAWAISNL----TSSGTPEQIKYLVEQG-IIKPL 412 (514)
T ss_pred cHHHHHHHHhccch-HHHHHHHHHHHhh----cccCCHHHHHHHHHcC-Cchhh
Confidence 89999999999984 7899999999998 5667765555556655 55444
No 201
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.31 E-value=3.1e-11 Score=137.71 Aligned_cols=197 Identities=16% Similarity=0.157 Sum_probs=143.9
Q ss_pred CEEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEE
Q 000744 1047 GRVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHE 1126 (1306)
Q Consensus 1047 d~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~s 1126 (1306)
+.++.++.||.+.+.+-.. +.-..+..|.+.|.+-.|+|||.-|+|++.||.|++|.-...-...+. +...+|+|
T Consensus 76 d~~~i~s~DGkf~il~k~~---rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~--Q~~~~v~c 150 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSA---RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVV--QNEESIRC 150 (737)
T ss_pred ceEEEEcCCceEEEecccc---hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHh--hcCceeEE
Confidence 4899999999999987654 355677899999999999999999999999999999985542111222 23478999
Q ss_pred EEe--CCcEEEEEcCCCeEEEEEecCC--EEEe-ccCCCeEEEEEeC--CEEEEEECCCcEEEEECCCCceeEEecCccc
Q 000744 1127 LTA--NAEIACFVSPATGVKVYNWSGA--IKHI-NFNKHVKSLVMTG--DKLYCGCSGYSIQEVDLGNLTSTTFYAGTKK 1199 (1306)
Q Consensus 1127 l~~--~~~~v~~s~dg~~I~i~~~~~~--~~l~-~~~~~V~sl~~s~--d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~ 1199 (1306)
++| +...+.+...| .+.+-....+ +..| .|.+-|.++.|++ |.+++|+.|-..++||-.... +..
T Consensus 151 ~~W~p~S~~vl~c~g~-h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~-Lf~------ 222 (737)
T KOG1524|consen 151 ARWAPNSNSIVFCQGG-HISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGAN-LFT------ 222 (737)
T ss_pred EEECCCCCceEEecCC-eEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcc-ccc------
Confidence 998 33333343333 3555555433 2223 5899999999995 579999999999999976443 331
Q ss_pred ccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEecCCCEEEEEEcCc--EEEEEECCCcEEE
Q 000744 1200 LLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFTTGIDIQHLAVNSD--FIFTATKCGTIEV 1269 (1306)
Q Consensus 1200 l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~~~~V~sla~spd--~Lasgs~Dg~I~I 1269 (1306)
-..|. +|++++|+|+..|++++ -+ +.|+=.. ..+.|..++|++| .+++|+..|.+.+
T Consensus 223 S~~~ey~ITSva~npd~~~~v~S--~n-t~R~~~p----------~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 223 SAAEEYAITSVAFNPEKDYLLWS--YN-TARFSSP----------RVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred CChhccceeeeeeccccceeeee--ee-eeeecCC----------CccceEEEEEcCCCceeeccccCceEEE
Confidence 23556 99999999998887765 22 5662211 3456999999999 8888888887765
No 202
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.31 E-value=1.1e-09 Score=128.84 Aligned_cols=250 Identities=12% Similarity=0.101 Sum_probs=153.8
Q ss_pred EEEECCCcEEEEeCCC-CccceEEEEcccCccEEEEEEcCCCCEEEEEe-CCCcEEEEEcC-CCceeEEEeecCCCCeEE
Q 000744 1050 LSSHSDGTIKMWDSGK-RVLRLIQEVREHTRAVTCLYVPSSGDKLYSGS-LDKTIRVWSIK-PEEIHCLQVHNVKEAVHE 1126 (1306)
Q Consensus 1050 aSgs~Dg~I~vWd~~t-~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs-~DgtI~VWdi~-~~~~~~i~~~~~~~~V~s 1126 (1306)
++...|+.|.+||+.+ +..+.+.++. +.+....+.++|++++|++++ .++.|.+|++. ++...........+....
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~ 84 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTH 84 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceE
Confidence 4447799999999964 4444666664 345677899999999987765 57899999997 343444444443445667
Q ss_pred EEe--CCc-EEEEEcCCCeEEEEEecCC------EEEeccCCCeEEEEEeCC--EE-EEEECCCcEEEEECCCCceeEEe
Q 000744 1127 LTA--NAE-IACFVSPATGVKVYNWSGA------IKHINFNKHVKSLVMTGD--KL-YCGCSGYSIQEVDLGNLTSTTFY 1194 (1306)
Q Consensus 1127 l~~--~~~-~v~~s~dg~~I~i~~~~~~------~~l~~~~~~V~sl~~s~d--~L-~sgs~Dg~I~iwDl~~~~~~~~~ 1194 (1306)
+.+ ++. ++..+..+..+.+|+.+.. .....+...+.++.++|+ ++ ++...++.|.+||+.+...+...
T Consensus 85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~ 164 (330)
T PRK11028 85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQ 164 (330)
T ss_pred EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccccc
Confidence 776 233 3333334555777877621 111123345677888876 55 45556799999999873322110
Q ss_pred cCc-ccccCCccEEEEEEeCCcEEEEEEecCCCEEEEEECCC--Cc--eEEEEec-------CCCEEEEEEcCc--EEEE
Q 000744 1195 AGT-KKLLGKQTIHSLHMHNGLLFAGGSSVDGTAGKVFSISS--KT--AVGSFTT-------GIDIQHLAVNSD--FIFT 1260 (1306)
Q Consensus 1195 ~~~-~~l~gh~~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t--~~--~l~~l~~-------~~~V~sla~spd--~Las 1260 (1306)
... .........+.+.|+|++.++......+++|.+||+.. ++ .+.++.. ......+.++|+ ++++
T Consensus 165 ~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv 244 (330)
T PRK11028 165 EPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYA 244 (330)
T ss_pred CCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEE
Confidence 000 00111124567899988776655555344899999973 33 2333321 112346889998 7777
Q ss_pred EE-CCCcEEEEECCCCe----EEEEEecccCCCCCCCeEEEEEcCCCCccC
Q 000744 1261 AT-KCGTIEVWLKERVT----RVASVKANNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1261 gs-~Dg~I~IWd~~tg~----~l~~l~~~~~~~~~~~V~slafSpdg~~La 1306 (1306)
+. .+++|.+|++.+.. .+..... + ...+.+.|+|||++|+
T Consensus 245 ~~~~~~~I~v~~i~~~~~~~~~~~~~~~---~---~~p~~~~~~~dg~~l~ 289 (330)
T PRK11028 245 CDRTASLISVFSVSEDGSVLSFEGHQPT---E---TQPRGFNIDHSGKYLI 289 (330)
T ss_pred ecCCCCeEEEEEEeCCCCeEEEeEEEec---c---ccCCceEECCCCCEEE
Confidence 75 47899999986432 2333331 1 2456899999999873
No 203
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.29 E-value=1.3e-10 Score=125.94 Aligned_cols=281 Identities=11% Similarity=0.016 Sum_probs=190.6
Q ss_pred cEEEEEeCCCcEEEEeCCCc--eEEcccCCCCEEEEEEeCC---EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEE
Q 000744 1009 KALMNLSSVNATELWHCNEV--TELDSSTNGEVLSLIHLKG---RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTC 1083 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~--~~i~~~H~~~V~sl~fspd---~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~s 1083 (1306)
.+|.....|+.|.+|++.+. ..-......++.+++|||| .|.+...|-.|.||.+.+. . ...++..+..+..
T Consensus 62 ~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~--~-~~~~~~pK~~~kg 138 (447)
T KOG4497|consen 62 HILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ--K-GYLLPHPKTNVKG 138 (447)
T ss_pred eeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccc--e-eEEecccccCcee
Confidence 56788889999999998753 2223344677999999997 7788888999999999886 3 2333334456788
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCCc-eeEEEeec-CCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEE--EeccCC
Q 000744 1084 LYVPSSGDKLYSGSLDKTIRVWSIKPEE-IHCLQVHN-VKEAVHELTANAEIACFVSPATGVKVYNWSGAIK--HINFNK 1159 (1306)
Q Consensus 1084 l~fspdg~~L~Sgs~DgtI~VWdi~~~~-~~~i~~~~-~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~--l~~~~~ 1159 (1306)
++|+|||++.+..+.-..--..++...+ ...+..+. .+-..+++. ++|||+.+.+|+.--..+ .+.-.-
T Consensus 139 ~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~Dltgie-------WsPdg~~laVwd~~Leykv~aYe~~l 211 (447)
T KOG4497|consen 139 YAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIE-------WSPDGNWLAVWDNVLEYKVYAYERGL 211 (447)
T ss_pred EEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCce-------ECCCCcEEEEecchhhheeeeeeecc
Confidence 9999999998887753211111111111 11111111 113345566 999999999998765544 344456
Q ss_pred CeEEEEEeC-C-EEEEEECCCcEEEEECCCCceeEEe-------------------------------------------
Q 000744 1160 HVKSLVMTG-D-KLYCGCSGYSIQEVDLGNLTSTTFY------------------------------------------- 1194 (1306)
Q Consensus 1160 ~V~sl~~s~-d-~L~sgs~Dg~I~iwDl~~~~~~~~~------------------------------------------- 1194 (1306)
.+..++|+| + ++++|+.|+.+|+.+--+.+....|
T Consensus 212 G~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~ 291 (447)
T KOG4497|consen 212 GLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEE 291 (447)
T ss_pred ceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCcccc
Confidence 789999997 3 6899999999987663332211110
Q ss_pred -----------------cCcccccCCc-cEEEEEEeCCcEEEEEEecCC--CEEEEEECCCCceEEEEecCCCEEEEEEc
Q 000744 1195 -----------------AGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDG--TAGKVFSISSKTAVGSFTTGIDIQHLAVN 1254 (1306)
Q Consensus 1195 -----------------~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg--~~I~IWD~~t~~~l~~l~~~~~V~sla~s 1254 (1306)
++........ .+.-++|++|..|+++-. |+ +.+-+||++..+.-..+....+|....|+
T Consensus 292 se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrn-d~~PnalW~Wdlq~l~l~avLiQk~piraf~Wd 370 (447)
T KOG4497|consen 292 SETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRN-DKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWD 370 (447)
T ss_pred chhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeec-CCCCceEEEEechhhhhhhhhhhccceeEEEeC
Confidence 0000111112 567789999999998862 32 37899999988877777777889999999
Q ss_pred Cc--EEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCCCccC
Q 000744 1255 SD--FIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1255 pd--~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~~La 1306 (1306)
|. .++.+.....+++|......++..-. ....|..+.|..+|..++
T Consensus 371 P~~prL~vctg~srLY~W~psg~~~V~vP~------~GF~i~~l~W~~~g~~i~ 418 (447)
T KOG4497|consen 371 PGRPRLVVCTGKSRLYFWAPSGPRVVGVPK------KGFNIQKLQWLQPGEFIV 418 (447)
T ss_pred CCCceEEEEcCCceEEEEcCCCceEEecCC------CCceeeeEEecCCCcEEE
Confidence 98 66666666779999987655555443 225899999999998764
No 204
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.28 E-value=1.3e-10 Score=129.74 Aligned_cols=259 Identities=13% Similarity=0.126 Sum_probs=167.7
Q ss_pred hccccccccccccccccc-----cEEEEEeCCCcEEEEeCC--------C----------ceEEcccCCCCEEEEEEeCC
Q 000744 991 YGTLRKLKKYSAVVTDIQ-----KALMNLSSVNATELWHCN--------E----------VTELDSSTNGEVLSLIHLKG 1047 (1306)
Q Consensus 991 ~~~l~~l~ghs~~V~~i~-----~~Lasgs~Dg~I~IWd~~--------~----------~~~i~~~H~~~V~sl~fspd 1047 (1306)
.+.+..|.+|...|+.+. ++||||+.+|.|.+|... + ...+..+|...|..++|+|+
T Consensus 55 V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d 134 (434)
T KOG1009|consen 55 VEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD 134 (434)
T ss_pred EEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCC
Confidence 355678899999998887 799999999999999765 1 34456789999999999996
Q ss_pred --EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc-eeEEEe-------
Q 000744 1048 --RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEE-IHCLQV------- 1117 (1306)
Q Consensus 1048 --~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~-~~~i~~------- 1117 (1306)
++++|+.|+++++||+..| .....+.+|...|..++|.|-++++++-+.|...+++.+.... ..++..
T Consensus 135 ~~~l~s~s~dns~~l~Dv~~G--~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~ 212 (434)
T KOG1009|consen 135 SNFLVSGSVDNSVRLWDVHAG--QLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKA 212 (434)
T ss_pred CceeeeeeccceEEEEEeccc--eeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecc
Confidence 9999999999999999999 8899999999999999999999999999999988888776643 111110
Q ss_pred -ecCCCCeEEEEeCC------cEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCCEEEEEECCCcEEEEECCCC-c
Q 000744 1118 -HNVKEAVHELTANA------EIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGDKLYCGCSGYSIQEVDLGNL-T 1189 (1306)
Q Consensus 1118 -~~~~~~V~sl~~~~------~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~-~ 1189 (1306)
....+.++.+-.+. ...+|+|||..+.+-. .++...++.. -++.++|+-... +
T Consensus 213 ~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPa--------------g~~~~g~~~~-----~n~tYvfsrk~l~r 273 (434)
T KOG1009|consen 213 FNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPA--------------GLFKVGGGVF-----RNTSYVFSRKDLKR 273 (434)
T ss_pred cCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccc--------------ceeeeCCcee-----eceeEeeccccccC
Confidence 00112222221111 1223344444221100 0000000000 011223322111 1
Q ss_pred eeEEecCcccccCCccEEEE-----------------EEe-CCcEEEEEEecCCCEEEEEECCCCceEEEEe--cCCCEE
Q 000744 1190 STTFYAGTKKLLGKQTIHSL-----------------HMH-NGLLFAGGSSVDGTAGKVFSISSKTAVGSFT--TGIDIQ 1249 (1306)
Q Consensus 1190 ~~~~~~~~~~l~gh~~I~sl-----------------~~s-~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~--~~~~V~ 1249 (1306)
+...+.+..+ +...+ .|+ |...+++.+..| .++|||.++-.++.... |-..|+
T Consensus 274 P~~~lp~~~k-----~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~--svyvydtq~~~P~~~v~nihy~~iT 346 (434)
T KOG1009|consen 274 PAARLPSPKK-----PALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKN--SVYVYDTQTLEPLAVVDNIHYSAIT 346 (434)
T ss_pred ceeecCCCCc-----ceEEEEeeeeEEEeccccccccccccccceEEEEeecc--eEEEeccccccceEEEeeeeeeeec
Confidence 1111111000 11111 122 445555555433 69999999988777776 567799
Q ss_pred EEEEcCc--EEEEEECCCcEEEEECCCCeE
Q 000744 1250 HLAVNSD--FIFTATKCGTIEVWLKERVTR 1277 (1306)
Q Consensus 1250 sla~spd--~Lasgs~Dg~I~IWd~~tg~~ 1277 (1306)
.++|++| +++..|.||...+-.++..+.
T Consensus 347 Diaws~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 347 DIAWSDDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred ceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence 9999999 999999999988887776543
No 205
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.27 E-value=1e-09 Score=121.51 Aligned_cols=226 Identities=15% Similarity=0.188 Sum_probs=164.2
Q ss_pred CCCEEEEEEeCC--EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCC--CcEEEEEcCCCc
Q 000744 1036 NGEVLSLIHLKG--RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLD--KTIRVWSIKPEE 1111 (1306)
Q Consensus 1036 ~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~D--gtI~VWdi~~~~ 1111 (1306)
...+..+.|+.+ .|..|+.|| -++|+..... ++... ......|.-+-|+. .+++..+.+ +.+++.+++.+.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~-k~~~~-~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFE-KCFSK-DTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchH-Hhhcc-cCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCc
Confidence 345667778876 677788887 5677766541 21111 11223455556653 455555544 458999998875
Q ss_pred eeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEE-----e-ccCCCeEEEEEeCC--EEEE-EE-CCCcEE
Q 000744 1112 IHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKH-----I-NFNKHVKSLVMTGD--KLYC-GC-SGYSIQ 1181 (1306)
Q Consensus 1112 ~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l-----~-~~~~~V~sl~~s~d--~L~s-gs-~Dg~I~ 1181 (1306)
.-|-..+. .+|.++.++.+-+++.-.+. |.+++.+.-..+ + .+...+.+++++.+ +++- ++ ..|.|.
T Consensus 80 ~ICe~~fp--t~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~ 156 (391)
T KOG2110|consen 80 TICEIFFP--TSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV 156 (391)
T ss_pred eEEEEecC--CceEEEEEccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence 55555554 88999999766666666666 999998854333 3 24455777777754 5543 22 368999
Q ss_pred EEECCCCceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEecC---CCEEEEEEcCc-
Q 000744 1182 EVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFTTG---IDIQHLAVNSD- 1256 (1306)
Q Consensus 1182 iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~~---~~V~sla~spd- 1256 (1306)
+||+.+-+.+..+. .|. ++-+++|+++|.+++++|..|..||||.+.+|+.+..|+-+ ..|.+++|+|+
T Consensus 157 l~d~~nl~~v~~I~------aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds 230 (391)
T KOG2110|consen 157 LFDTINLQPVNTIN------AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDS 230 (391)
T ss_pred EEEcccceeeeEEE------ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCC
Confidence 99999988887554 666 99999999999999999988888999999999999999843 34999999999
Q ss_pred -EEEEEECCCcEEEEECCCC
Q 000744 1257 -FIFTATKCGTIEVWLKERV 1275 (1306)
Q Consensus 1257 -~Lasgs~Dg~I~IWd~~tg 1275 (1306)
+|.+.|..++|+||.+++.
T Consensus 231 ~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 231 QFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred CeEEEecCCCeEEEEEeccc
Confidence 9999999999999998754
No 206
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.26 E-value=3.6e-10 Score=122.91 Aligned_cols=229 Identities=12% Similarity=0.051 Sum_probs=170.0
Q ss_pred CCCEEEEEEeCC--EEEEEECCCcEEEEeCCCCc-cceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEc-CCCc
Q 000744 1036 NGEVLSLIHLKG--RVLSSHSDGTIKMWDSGKRV-LRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSI-KPEE 1111 (1306)
Q Consensus 1036 ~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t~~-~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi-~~~~ 1111 (1306)
..+|+|.+|++| .++.+-....|.||...+.+ ++..++++.|...|++|+|+|..+.|++|+.|..-.||.. ..++
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence 578999999997 89999999999999998876 7899999999999999999999999999999999999999 4554
Q ss_pred e-eEEEeecCCCCeEEEEe--CCcEEEEEcCCCeEEEEEecCCEEEe-------ccCCCeEEEEEeCC--EEEEEECCCc
Q 000744 1112 I-HCLQVHNVKEAVHELTA--NAEIACFVSPATGVKVYNWSGAIKHI-------NFNKHVKSLVMTGD--KLYCGCSGYS 1179 (1306)
Q Consensus 1112 ~-~~i~~~~~~~~V~sl~~--~~~~v~~s~dg~~I~i~~~~~~~~l~-------~~~~~V~sl~~s~d--~L~sgs~Dg~ 1179 (1306)
. ..+....+...++++.| ..+.+.+...++.|.++.+.+...-| .+.+.|++++|+++ .+++|+.|+.
T Consensus 90 WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k 169 (361)
T KOG1523|consen 90 WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGK 169 (361)
T ss_pred eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcc
Confidence 3 33444456789999998 56677777888888898888665443 24678999999987 5889999999
Q ss_pred EEEEECCCCceeEEec----Ccc--------cccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCc-eEEEEe-c
Q 000744 1180 IQEVDLGNLTSTTFYA----GTK--------KLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKT-AVGSFT-T 1244 (1306)
Q Consensus 1180 I~iwDl~~~~~~~~~~----~~~--------~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~-~l~~l~-~ 1244 (1306)
.++|...-...-..-. +.+ ...... +|..+.|++.+..++--++|+ ++.+=|..... .+.+.. .
T Consensus 170 ~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds-~v~~~da~~p~~~v~~~~~~ 248 (361)
T KOG1523|consen 170 CRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDS-TVSFVDAAGPSERVQSVATA 248 (361)
T ss_pred eeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCC-ceEEeecCCCchhccchhhc
Confidence 9999743111000000 000 011112 899999998777777667898 89999876654 333333 3
Q ss_pred CCCEEEEEEcCc-EEEEEECCC
Q 000744 1245 GIDIQHLAVNSD-FIFTATKCG 1265 (1306)
Q Consensus 1245 ~~~V~sla~spd-~Lasgs~Dg 1265 (1306)
+.+..++.|-.+ .++.++.|.
T Consensus 249 ~lP~ls~~~ise~~vv~ag~~c 270 (361)
T KOG1523|consen 249 QLPLLSVSWISENSVVAAGYDC 270 (361)
T ss_pred cCCceeeEeecCCceeecCCCC
Confidence 456677776544 666666663
No 207
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=5.7e-11 Score=133.68 Aligned_cols=180 Identities=20% Similarity=0.195 Sum_probs=133.7
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCe
Q 000744 1082 TCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHV 1161 (1306)
Q Consensus 1082 ~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V 1161 (1306)
.+++|+.+|..+++|+.||++|||+..+.. .......|...|.+++ |+|||+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~-t~l~e~~~~~eV~DL~-------FS~dgk-------------------- 199 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSML-TILEEIAHHAEVKDLD-------FSPDGK-------------------- 199 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcch-hhhhhHhhcCccccce-------eCCCCc--------------------
Confidence 678999999999999999999999966542 1222234557777777 777776
Q ss_pred EEEEEeCCEEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeCC----cEEEEEEecCCCEEEEEECCCC
Q 000744 1162 KSLVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNG----LLFAGGSSVDGTAGKVFSISSK 1236 (1306)
Q Consensus 1162 ~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~----~~llas~s~Dg~~I~IWD~~t~ 1236 (1306)
.|++-+.| ..++|+.+++..+....+ .+.+ ....+.|+.+ .++++..-.+++.|+.||+..+
T Consensus 200 --------~lasig~d-~~~VW~~~~g~~~a~~t~----~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w 266 (398)
T KOG0771|consen 200 --------FLASIGAD-SARVWSVNTGAALARKTP----FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLW 266 (398)
T ss_pred --------EEEEecCC-ceEEEEeccCchhhhcCC----cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeee
Confidence 68888888 899999999976654332 1222 5666777633 4455554455557888776543
Q ss_pred ce------EEEEecCCCEEEEEEcCc--EEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCCCccC
Q 000744 1237 TA------VGSFTTGIDIQHLAVNSD--FIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1237 ~~------l~~l~~~~~V~sla~spd--~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~~La 1306 (1306)
.- .+.+..+..|++++++++ +++.|+.||.|-|++..+.++++-.+ ..|...|+.+.|+||.++++
T Consensus 267 ~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk----~aH~~~VT~ltF~Pdsr~~~ 340 (398)
T KOG0771|consen 267 SGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVK----EAHLGFVTGLTFSPDSRYLA 340 (398)
T ss_pred ccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeeh----hhheeeeeeEEEcCCcCccc
Confidence 22 112224567999999998 99999999999999999998888877 45778999999999998764
No 208
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=7.3e-10 Score=134.57 Aligned_cols=250 Identities=16% Similarity=0.184 Sum_probs=169.1
Q ss_pred EEeCC-EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCC---CEEEEEeCCCcEEEEEcCCCceeEEEee
Q 000744 1043 IHLKG-RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSG---DKLYSGSLDKTIRVWSIKPEEIHCLQVH 1118 (1306)
Q Consensus 1043 ~fspd-~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg---~~L~Sgs~DgtI~VWdi~~~~~~~i~~~ 1118 (1306)
.|++| ..+-+..+..|+||...|+ .++..+.+|..+++.+.+.|.. .++++++.||+|++||...+. .++.+
T Consensus 23 vfSnD~k~l~~~~~~~V~VyS~~Tg--~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~--Llkt~ 98 (792)
T KOG1963|consen 23 VFSNDAKFLFLCTGNFVKVYSTATG--ECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGE--LLKTF 98 (792)
T ss_pred ccccCCcEEEEeeCCEEEEEecchH--hhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcE--EEEEE
Confidence 46776 5555666789999999999 9999999999999999998854 477899999999999999884 44444
Q ss_pred cCCCCeEEEEe------CCcEEEEEcCCCeEEE-EEec--CCEE------Eecc-------CCCeEEEEEeCC-EEEEEE
Q 000744 1119 NVKEAVHELTA------NAEIACFVSPATGVKV-YNWS--GAIK------HINF-------NKHVKSLVMTGD-KLYCGC 1175 (1306)
Q Consensus 1119 ~~~~~V~sl~~------~~~~v~~s~dg~~I~i-~~~~--~~~~------l~~~-------~~~V~sl~~s~d-~L~sgs 1175 (1306)
....++..+.+ ....+..+.+...+.. ...+ +... ...+ ...-.++.+++. .+....
T Consensus 99 ~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~ 178 (792)
T KOG1963|consen 99 DNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIV 178 (792)
T ss_pred ecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEE
Confidence 43345544443 1112212222211111 1111 1100 0011 111356666644 455556
Q ss_pred CCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCC--C-c-eEEEEe-cCCCEE
Q 000744 1176 SGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISS--K-T-AVGSFT-TGIDIQ 1249 (1306)
Q Consensus 1176 ~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t--~-~-~l~~l~-~~~~V~ 1249 (1306)
.+..+.+|+..++. .....+..-..|. .+++.++||++.+++++..|| .|.+|.-.. + . ....+. |+..|+
T Consensus 179 ~~~~~~~~~v~~~~--~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dG-rI~vw~d~~~~~~~~t~t~lHWH~~~V~ 255 (792)
T KOG1963|consen 179 HMCKIHIYFVPKHT--KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDG-RILVWRDFGSSDDSETCTLLHWHHDEVN 255 (792)
T ss_pred EeeeEEEEEecccc--eeeccchhhhhhcccceeEEeccccceEEEeccCC-cEEEEeccccccccccceEEEecccccc
Confidence 67789999988765 2222222333566 789999999999999999898 699996432 1 1 223333 688999
Q ss_pred EEEEcCc--EEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCCCcc
Q 000744 1250 HLAVNSD--FIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDGHPY 1305 (1306)
Q Consensus 1250 sla~spd--~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~~L 1305 (1306)
+++|+++ +|++||..|.+-+|.+.+++ +++- ..-..+|..+.+|||+.+.
T Consensus 256 ~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfL----PRLgs~I~~i~vS~ds~~~ 307 (792)
T KOG1963|consen 256 SLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFL----PRLGSPILHIVVSPDSDLY 307 (792)
T ss_pred eeEEecCCceEeecccceEEEEEeecCCC--cccc----cccCCeeEEEEEcCCCCeE
Confidence 9999999 99999999999999999987 3333 2234689999999999753
No 209
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=1.6e-10 Score=136.51 Aligned_cols=316 Identities=18% Similarity=0.212 Sum_probs=243.7
Q ss_pred HHHhChhhHHHhhcC-CCCHHHHHHHHHHHHHHhhhcCCCcccccccccccchHHHHHHHhcCCcHHHHHHHHHHHHHHh
Q 000744 485 TIINGLKPYVTCLCT-SENLQECETAVLAIARLWKESKGDPGVHAYLLKPTIINGFAEILSASLSREVLRTSVYILSELM 563 (1306)
Q Consensus 485 ~~~~~~~~~l~~Ll~-s~~~~~~e~Av~~i~~L~~~~~~~~~~~~~i~~~~~I~~Lv~~L~~~~~~~~~e~Av~~L~~L~ 563 (1306)
....|+++.++..+. ..+...|.+|+-+|.|++....... ..++++|++|.|+.+|.+. ++.++|.|+-+|.|++
T Consensus 105 vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T---~~vv~agavp~fi~Ll~s~-~~~v~eQavWALgNIa 180 (514)
T KOG0166|consen 105 VIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQT---KVVVDAGAVPIFIQLLSSP-SADVREQAVWALGNIA 180 (514)
T ss_pred HHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhc---cccccCCchHHHHHHhcCC-cHHHHHHHHHHHhccc
Confidence 344577777766664 6679999999999999998776443 5788999999999999999 9999999999999997
Q ss_pred ccCccccccccccCCchHHHHHHHhcCh-----HHHHHHHhccCCCH---HH-HhhCCchHHHHHHhhcCCccccchhcc
Q 000744 564 VADESVGDILTSVDSDFDCLAALLKNGL-----GEAAVLIYQLRPAF---AQ-LSAHEFIPSLVQLVLNKTEEFDELQFV 634 (1306)
Q Consensus 564 s~~~~~~~~I~~~~~~i~~Lv~lLk~g~-----~~Aa~aL~~L~~~~---~~-i~~~g~i~~Lv~ll~~g~~~~~~~~~~ 634 (1306)
--.+..|..+.+ .|++++|+.++.... ++|+=+|.|||.++ +. -.-..++|.|+.+|...+.+.-
T Consensus 181 gds~~~Rd~vl~-~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl----- 254 (514)
T KOG0166|consen 181 GDSPDCRDYVLS-CGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVL----- 254 (514)
T ss_pred cCChHHHHHHHh-hcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHH-----
Confidence 666667777776 999999999998754 78999999998722 22 3347889999999999774431
Q ss_pred cCchHHHHHHHHHHHccCCCCCchhhhhHhhcCCCHHHHHhhcC--ChhHHHHHHHHHHhhhhccchhHHHHHHhcccch
Q 000744 635 MEPKDAAIEMLEQILMGGDKKSRSITALSLISANGIPALIKCLD--RVEVRRSIVSILLCCMHADKSCKTLIAKRIELSH 712 (1306)
Q Consensus 635 ~~~k~aa~~lL~~l~~~~~~~~~~~n~~~i~~~g~i~~Lv~~l~--~~~~~~~~~~~L~~~~~~~~~~r~~i~~~~~~~~ 712 (1306)
+| |...|.-|..+. ++.-..++.+|++|.||++|+ +..-+..|+..+-+....++.=...+...+.+|.
T Consensus 255 ---~D-a~WAlsyLsdg~-----ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~ 325 (514)
T KOG0166|consen 255 ---TD-ACWALSYLTDGS-----NEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPV 325 (514)
T ss_pred ---HH-HHHHHHHHhcCC-----hHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHH
Confidence 34 445556676554 577788999999999999994 3334456777777777778888888999999999
Q ss_pred hhhhhh-cCCchhHhHHHHHHHHHHhcchhhhHHHHHHHhhhcCCcchHHHHHHHhhcCCCcchhhHHHHHHhhhcccCC
Q 000744 713 VLDLFH-DGNDSVRGICINFLSELVLLNRRTFSNQILQVIRDEGSFSTMHTFLVYLQMAPMEQQPATASLLLQLDLLVEP 791 (1306)
Q Consensus 713 l~~ll~-~g~~~~k~~a~~~L~~L~~~~~~~~~~~~l~~i~~~g~~~~m~~ll~~l~~~~~~~~~~~A~~l~~l~~l~~~ 791 (1306)
|..|+. +..+.-|..|.=+++++.--+ ..-.+.+-+.|- ++.|+..|+.+.-+-|..||=.+.++..-+.|
T Consensus 326 l~~ll~~s~~~~ikkEAcW~iSNItAG~-----~~qiqaVida~l---~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~ 397 (514)
T KOG0166|consen 326 LSNLLSSSPKESIKKEACWTISNITAGN-----QEQIQAVIDANL---IPVLINLLQTAEFDIRKEAAWAISNLTSSGTP 397 (514)
T ss_pred HHHHhccCcchhHHHHHHHHHHHhhcCC-----HHHHHHHHHccc---HHHHHHHHhccchHHHHHHHHHHHhhcccCCH
Confidence 999998 445556888999998886432 233444555554 45599999999998999999999999988887
Q ss_pred ccc-cccHHHHHHHHHHHHhcCCCchHHHHHHHHHHhc
Q 000744 792 RKM-SMYREEAVEALIEALRRKDFPNSQMMALDALLSL 828 (1306)
Q Consensus 792 ~~~-~~~reeai~~l~~~l~~~~~~~~q~~aa~~l~~l 828 (1306)
++. -++..+.|+++...|.+.+.. ....+-.+|-++
T Consensus 398 ~qi~yLv~~giI~plcdlL~~~D~~-ii~v~Ld~l~ni 434 (514)
T KOG0166|consen 398 EQIKYLVEQGIIKPLCDLLTCPDVK-IILVALDGLENI 434 (514)
T ss_pred HHHHHHHHcCCchhhhhcccCCChH-HHHHHHHHHHHH
Confidence 544 566888899999999777653 344455666554
No 210
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.23 E-value=9.9e-11 Score=125.14 Aligned_cols=214 Identities=12% Similarity=0.103 Sum_probs=142.3
Q ss_pred CCCcEEEEeCCCCccc-eEEEEcccCccEEEEEEcC-CCCEEEEEeCC-------CcEEEEEcCCCceeEEEeecCCCCe
Q 000744 1054 SDGTIKMWDSGKRVLR-LIQEVREHTRAVTCLYVPS-SGDKLYSGSLD-------KTIRVWSIKPEEIHCLQVHNVKEAV 1124 (1306)
Q Consensus 1054 ~Dg~I~vWd~~t~~~~-~i~~l~~H~~~V~sl~fsp-dg~~L~Sgs~D-------gtI~VWdi~~~~~~~i~~~~~~~~V 1124 (1306)
.|+.|.+.+++.+... .-..|..|.+.|+.++-+| +.+.|+|+..| -.+.||.+...... ....+.
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~-----S~~~tl 112 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQ-----SNSSTL 112 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCc-----cccchh
Confidence 4678888877654212 2345667889999999999 55666666543 23568887654200 000001
Q ss_pred EEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCC--EEEEEECCCcEEEEECCCCce-eEEecCccccc
Q 000744 1125 HELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGD--KLYCGCSGYSIQEVDLGNLTS-TTFYAGTKKLL 1201 (1306)
Q Consensus 1125 ~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d--~L~sgs~Dg~I~iwDl~~~~~-~~~~~~~~~l~ 1201 (1306)
.+++ .-|. .+-+.|.|+.|.|+ ++++- .|..|.+|++..+.. +........ .
T Consensus 113 E~v~--------~Ldt---------------eavg~i~cvew~Pns~klasm-~dn~i~l~~l~ess~~vaev~ss~s-~ 167 (370)
T KOG1007|consen 113 ECVA--------SLDT---------------EAVGKINCVEWEPNSDKLASM-DDNNIVLWSLDESSKIVAEVLSSES-A 167 (370)
T ss_pred hHhh--------cCCH---------------HHhCceeeEEEcCCCCeeEEe-ccCceEEEEcccCcchheeeccccc-c
Confidence 1111 0000 13346778888776 45443 489999999998765 332222111 1
Q ss_pred CCc-cEEEEEEeC---CcEEEEEEecCCCEEEEEECCCCceEEEEe--cCCCEEEEEEcCc---EEEEEECCCcEEEEEC
Q 000744 1202 GKQ-TIHSLHMHN---GLLFAGGSSVDGTAGKVFSISSKTAVGSFT--TGIDIQHLAVNSD---FIFTATKCGTIEVWLK 1272 (1306)
Q Consensus 1202 gh~-~I~sl~~s~---~~~llas~s~Dg~~I~IWD~~t~~~l~~l~--~~~~V~sla~spd---~Lasgs~Dg~I~IWd~ 1272 (1306)
++. ..++-.|+| +..+.+++ |+ ++..||+++.++...+. |...|..+.|+|+ +|++|++||.|+|||.
T Consensus 168 e~~~~ftsg~WspHHdgnqv~tt~--d~-tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~ 244 (370)
T KOG1007|consen 168 EMRHSFTSGAWSPHHDGNQVATTS--DS-TLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDT 244 (370)
T ss_pred cccceecccccCCCCccceEEEeC--CC-cEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEec
Confidence 234 677788874 44555443 66 89999999988888887 5567999999998 9999999999999998
Q ss_pred CC-CeEEEEEecccCCCCCCCeEEEEEcCCCCcc
Q 000744 1273 ER-VTRVASVKANNSGGGHAKITCLGTGVDGHPY 1305 (1306)
Q Consensus 1273 ~t-g~~l~~l~~~~~~~~~~~V~slafSpdg~~L 1305 (1306)
++ ..+++++.+ |..+||+|.|+|--..|
T Consensus 245 R~tk~pv~el~~-----HsHWvW~VRfn~~hdqL 273 (370)
T KOG1007|consen 245 RKTKFPVQELPG-----HSHWVWAVRFNPEHDQL 273 (370)
T ss_pred cCCCccccccCC-----CceEEEEEEecCccceE
Confidence 75 457777765 66799999999975444
No 211
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.21 E-value=8.9e-10 Score=137.36 Aligned_cols=353 Identities=17% Similarity=0.181 Sum_probs=229.3
Q ss_pred HHHHHHHHhhhcCCCcccccccccccchHHHHHHHhcCCcHHHHHHHHHHHHHHhccCccccccccccCCchHHHHHHHh
Q 000744 509 AVLAIARLWKESKGDPGVHAYLLKPTIINGFAEILSASLSREVLRTSVYILSELMVADESVGDILTSVDSDFDCLAALLK 588 (1306)
Q Consensus 509 Av~~i~~L~~~~~~~~~~~~~i~~~~~I~~Lv~~L~~~~~~~~~e~Av~~L~~L~s~~~~~~~~I~~~~~~i~~Lv~lLk 588 (1306)
+...|+||+.+. +++..+.+.|.|+.||++|.++ +.+.+-.+++.|..| |+..+||..|++ .|.|+.|+.+|+
T Consensus 269 ~~~lLlNLAed~----~ve~kM~~~~iV~~Lv~~Ldr~-n~ellil~v~fLkkL-Si~~ENK~~m~~-~giV~kL~kLl~ 341 (708)
T PF05804_consen 269 AFYLLLNLAEDP----RVELKMVNKGIVSLLVKCLDRE-NEELLILAVTFLKKL-SIFKENKDEMAE-SGIVEKLLKLLP 341 (708)
T ss_pred HHHHHHHHhcCh----HHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHH-cCCHHHHHHHHH-cCCHHHHHHHhc
Confidence 556688888765 5567889999999999999988 889999999999999 888889999997 899999999999
Q ss_pred cCh----HHHHHHHhccCC---CHHHHhhCCchHHHHHHhhcCCccccchhcccCchHHHHHHHHHHHccCCCCCchhhh
Q 000744 589 NGL----GEAAVLIYQLRP---AFAQLSAHEFIPSLVQLVLNKTEEFDELQFVMEPKDAAIEMLEQILMGGDKKSRSITA 661 (1306)
Q Consensus 589 ~g~----~~Aa~aL~~L~~---~~~~i~~~g~i~~Lv~ll~~g~~~~~~~~~~~~~k~aa~~lL~~l~~~~~~~~~~~n~ 661 (1306)
++. ..|..+|||||. ++.+|++.|.||.|+.+|.+.+.. .-|+.+|.+|.. ..+++
T Consensus 342 s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~~~-----------~val~iLy~LS~------dd~~r 404 (708)
T PF05804_consen 342 SENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPNFR-----------EVALKILYNLSM------DDEAR 404 (708)
T ss_pred CCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCchH-----------HHHHHHHHHhcc------CHhhH
Confidence 875 679999999998 999999999999999999876511 247788887743 45889
Q ss_pred hHhhcCCCHHHHHhhc--C-ChhHHHHHHHHHHhhhhccchhHHHHHHhcccchhhhhhhcCCchhHhHHHHHHHHHHhc
Q 000744 662 LSLISANGIPALIKCL--D-RVEVRRSIVSILLCCMHADKSCKTLIAKRIELSHVLDLFHDGNDSVRGICINFLSELVLL 738 (1306)
Q Consensus 662 ~~i~~~g~i~~Lv~~l--~-~~~~~~~~~~~L~~~~~~~~~~r~~i~~~~~~~~l~~ll~~g~~~~k~~a~~~L~~L~~~ 738 (1306)
..+...++||.|+++| + ..+....+++++.++ ..+..+-..|.+.++++.|++.....++. -.+.++-++...
T Consensus 405 ~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNL-a~~~rnaqlm~~g~gL~~L~~ra~~~~D~---lLlKlIRNiS~h 480 (708)
T PF05804_consen 405 SMFAYTDCIPQLMQMLLENSEEEVQLELIALLINL-ALNKRNAQLMCEGNGLQSLMKRALKTRDP---LLLKLIRNISQH 480 (708)
T ss_pred HHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHH-hcCHHHHHHHHhcCcHHHHHHHHHhcccH---HHHHHHHHHHhc
Confidence 9999999999999998 3 222233445555544 55666778888888899988876554431 111122222221
Q ss_pred chhhhHHHHHHHhhhcCCcchHHHHHHHhhcC-CCcchhhHHHHHHhhhcccCCccccccH-HHHHHHHHHHHhcCCCc-
Q 000744 739 NRRTFSNQILQVIRDEGSFSTMHTFLVYLQMA-PMEQQPATASLLLQLDLLVEPRKMSMYR-EEAVEALIEALRRKDFP- 815 (1306)
Q Consensus 739 ~~~~~~~~~l~~i~~~g~~~~m~~ll~~l~~~-~~~~~~~~A~~l~~l~~l~~~~~~~~~r-eeai~~l~~~l~~~~~~- 815 (1306)
+.. -+....+.+..|+..++.. +.+..-.+-+.|.+|...+ .+-..+.+ -..++-|...|..+...
T Consensus 481 ~~~----------~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~-ld~~~ll~~~~llp~L~~~L~~g~~~d 549 (708)
T PF05804_consen 481 DGP----------LKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPD-LDWAQLLQEYNLLPWLKDLLKPGASED 549 (708)
T ss_pred Cch----------HHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCC-cCHHHHHHhCCHHHHHHHHhCCCCCCh
Confidence 110 0111122333455555553 3333334456666666532 22233333 37888888888766543
Q ss_pred hHHHHHHHHHHhccceeecCCchhhHHHHHHhhCCCcccccccccccCCCCCchhhhchHHHHHHHhhHHHHhhHhhccC
Q 000744 816 NSQMMALDALLSLTGRFTFSGKSYTEALLLKIAGFDQPYNALMKPERLSKPESEMVESMEEEEQAACSWEKRVAFVLCNH 895 (1306)
Q Consensus 816 ~~q~~aa~~l~~l~g~~s~~g~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~w~~~~~~~L~~h 895 (1306)
..+.++... .|+.+. ++-. +-++-+.|+.......++.+ . ||+.+-..--++-..++-|
T Consensus 550 Dl~LE~Vi~----~gtla~--d~~~-A~lL~~sgli~~Li~LL~~k--------q------eDdE~VlQil~~f~~ll~h 608 (708)
T PF05804_consen 550 DLLLEVVIL----LGTLAS--DPEC-APLLAKSGLIPTLIELLNAK--------Q------EDDEIVLQILYVFYQLLFH 608 (708)
T ss_pred HHHHHHHHH----HHHHHC--CHHH-HHHHHhCChHHHHHHHHHhh--------C------chHHHHHHHHHHHHHHHcC
Confidence 455554433 344443 2323 44555577777666554322 1 1122334455556666666
Q ss_pred CC--------cchHHHHHHHhhcCChhhHHHHHH
Q 000744 896 EK--------GSIFKALEECLKSNSLEMAKSCLV 921 (1306)
Q Consensus 896 ~~--------~~~~~~l~~~L~s~~~dl~r~~ll 921 (1306)
+. ......+.+.+..++.++.+.|-.
T Consensus 609 ~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~ 642 (708)
T PF05804_consen 609 EETREVLLKETEIPAYLIDLMHDKNAEIRKVCDN 642 (708)
T ss_pred hHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHH
Confidence 43 223445666666777766554443
No 212
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.21 E-value=2e-09 Score=117.27 Aligned_cols=225 Identities=14% Similarity=0.199 Sum_probs=153.9
Q ss_pred CEEEEEEeCC--EEEEEECCCcEEEEeCCCCccceEEEEcccCc--cEEEEEEcCCCCEE-EEEeCC------CcEEEEE
Q 000744 1038 EVLSLIHLKG--RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTR--AVTCLYVPSSGDKL-YSGSLD------KTIRVWS 1106 (1306)
Q Consensus 1038 ~V~sl~fspd--~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~--~V~sl~fspdg~~L-~Sgs~D------gtI~VWd 1106 (1306)
...+++|+.| .+++|. |.-.+||+.+.- +....-+-+.+ .+.-+-| -.+++ +.||.+ +.|.|||
T Consensus 7 ~~lsvs~NQD~ScFava~-~~Gfriyn~~P~--ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVAT-DTGFRIYNCDPF--KESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred ceeEEEEccCCceEEEEe-cCceEEEecCch--hhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEe
Confidence 4566999987 455555 445899998653 22111111222 2222222 12333 345444 4799999
Q ss_pred cCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEe---c---cCCCeEEEEEeCC--EEE-EEECC
Q 000744 1107 IKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHI---N---FNKHVKSLVMTGD--KLY-CGCSG 1177 (1306)
Q Consensus 1107 i~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~---~---~~~~V~sl~~s~d--~L~-sgs~D 1177 (1306)
-.. .+++..+....+|.++.+....+++.-.++ |.+|.+....+.. + ......+++-+.+ .|+ -|-.-
T Consensus 82 D~k--~~~i~el~f~~~I~~V~l~r~riVvvl~~~-I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~ 158 (346)
T KOG2111|consen 82 DLK--ERCIIELSFNSEIKAVKLRRDRIVVVLENK-IYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKT 158 (346)
T ss_pred ccc--CcEEEEEEeccceeeEEEcCCeEEEEecCe-EEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCcc
Confidence 333 478888877899999999555555555555 8888888543322 2 2334555555433 233 34557
Q ss_pred CcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEec---CCCEEEEEE
Q 000744 1178 YSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFTT---GIDIQHLAV 1253 (1306)
Q Consensus 1178 g~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~---~~~V~sla~ 1253 (1306)
|.|++-|+...+.- .+..+..|. .|.+++.+-+|.+++++|..|.-|||||..+|+.+..+.- +..|++++|
T Consensus 159 GqvQi~dL~~~~~~----~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaF 234 (346)
T KOG2111|consen 159 GQVQIVDLASTKPN----APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAF 234 (346)
T ss_pred ceEEEEEhhhcCcC----CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEe
Confidence 99999999876542 111355788 9999999988888999999998899999999999999983 456999999
Q ss_pred cCc--EEEEEECCCcEEEEECCC
Q 000744 1254 NSD--FIFTATKCGTIEVWLKER 1274 (1306)
Q Consensus 1254 spd--~Lasgs~Dg~I~IWd~~t 1274 (1306)
||+ +|+.+|+.|+++|+.++.
T Consensus 235 Sp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 235 SPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CCCccEEEEEcCCCeEEEEEeec
Confidence 999 999999999999998764
No 213
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=8.9e-10 Score=127.37 Aligned_cols=191 Identities=14% Similarity=0.173 Sum_probs=146.2
Q ss_pred EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEE
Q 000744 1048 RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHEL 1127 (1306)
Q Consensus 1048 ~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl 1127 (1306)
-|+.++....|+-++++.| ..+..|....+.+++|..++...+|++|+.||.|-.||.++.. .|..+
T Consensus 147 Dly~~gsg~evYRlNLEqG--rfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks-----------rv~~l 213 (703)
T KOG2321|consen 147 DLYLVGSGSEVYRLNLEQG--RFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS-----------RVGTL 213 (703)
T ss_pred cEEEeecCcceEEEEcccc--ccccccccccccceeeeecCccceEEecccCceEEEecchhhh-----------hheee
Confidence 4566666677888999999 7788888778999999999988899999999999999999862 22222
Q ss_pred EeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCC--EEEEEECCCcEEEEECCCCceeEEecCcccccCCc-
Q 000744 1128 TANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGD--KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ- 1204 (1306)
Q Consensus 1128 ~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d--~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~- 1204 (1306)
..... +-..|.+. ....|+++.|+.+ .+++|+.+|.+.|||+++.+++.+-. .+..
T Consensus 214 ~~~~~-v~s~pg~~---------------~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kd-----h~~e~ 272 (703)
T KOG2321|consen 214 DAASS-VNSHPGGD---------------AAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKD-----HGYEL 272 (703)
T ss_pred ecccc-cCCCcccc---------------ccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecc-----cCCcc
Confidence 21000 00111111 3356899999875 68999999999999999998876321 1223
Q ss_pred cEEEEEEeC--CcEEEEEEecCCCEEEEEECCCCceEEEEecCCCEEEEEEcCc--EEEEEECCCcEEEEECCC
Q 000744 1205 TIHSLHMHN--GLLFAGGSSVDGTAGKVFSISSKTAVGSFTTGIDIQHLAVNSD--FIFTATKCGTIEVWLKER 1274 (1306)
Q Consensus 1205 ~I~sl~~s~--~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~~~~V~sla~spd--~Lasgs~Dg~I~IWd~~t 1274 (1306)
+|..+.|.+ ++.-+++. |...++|||-.+|+....+....+++.+++-|+ +++++-.++.+..|=+..
T Consensus 273 pi~~l~~~~~~~q~~v~S~--Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 273 PIKKLDWQDTDQQNKVVSM--DKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred ceeeecccccCCCceEEec--chHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 999999963 35555554 777999999999999999998888999999998 999999998888776654
No 214
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.16 E-value=1.7e-10 Score=132.19 Aligned_cols=165 Identities=20% Similarity=0.214 Sum_probs=125.3
Q ss_pred ccccccccccccccc-----cEEEEEeCCCcEEEEeCCC---ceEEcccCCCCEEEEEEeC---C-EEEEEECCCcEEEE
Q 000744 994 LRKLKKYSAVVTDIQ-----KALMNLSSVNATELWHCNE---VTELDSSTNGEVLSLIHLK---G-RVLSSHSDGTIKMW 1061 (1306)
Q Consensus 994 l~~l~ghs~~V~~i~-----~~Lasgs~Dg~I~IWd~~~---~~~i~~~H~~~V~sl~fsp---d-~LaSgs~Dg~I~vW 1061 (1306)
-..|.||+|-|+++. .+|++||.|-.+.|||.-. ...+.++|...|.|+.|-| + .++||..|..|+++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 357899999999987 8999999999999999853 5667899999999999988 3 89999999999999
Q ss_pred eCCC--------CccceEEEEcccCccEEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCc
Q 000744 1062 DSGK--------RVLRLIQEVREHTRAVTCLYVPSSG-DKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAE 1132 (1306)
Q Consensus 1062 d~~t--------~~~~~i~~l~~H~~~V~sl~fspdg-~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~ 1132 (1306)
|+.. +..+.+..+..|...|..++-.|++ +.+.+++.||+|+-+|++... .|- +...+....
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph-~c~----p~~~~~~~l---- 193 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPH-VCN----PDEDCPSIL---- 193 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCc-cCC----ccccccHHH----
Confidence 9973 1124566678899999999999987 789999999999999998741 010 001111110
Q ss_pred EEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeC---CEEEEEECCCcEEEEECC
Q 000744 1133 IACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTG---DKLYCGCSGYSIQEVDLG 1186 (1306)
Q Consensus 1133 ~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~---d~L~sgs~Dg~I~iwDl~ 1186 (1306)
....+. --...|+.++| .+|++|+.|-..++||.+
T Consensus 194 ---~ny~~~----------------lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 194 ---VNYNPQ----------------LIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred ---HHhchh----------------hheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 000000 02345666664 479999999999999964
No 215
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.15 E-value=4.5e-11 Score=142.50 Aligned_cols=218 Identities=17% Similarity=0.172 Sum_probs=155.4
Q ss_pred cccCCCCEEEEEEeCC--EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 000744 1032 DSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKP 1109 (1306)
Q Consensus 1032 ~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~ 1109 (1306)
+.+|.+.|+|..|... ++++|+.|..++||..++. .++....||.+.|+.++.+.+..+++++|.|..|+||.+.+
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~--~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~ 263 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA--RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD 263 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccch--hhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC
Confidence 3589999999999874 9999999999999999998 89999999999999999999999999999999999999998
Q ss_pred CceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCCEEEEEECCCcEEEEECCCCc
Q 000744 1110 EEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGDKLYCGCSGYSIQEVDLGNLT 1189 (1306)
Q Consensus 1110 ~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~ 1189 (1306)
+. +|.- +.+|++.|++++|+|-. +.+.||++++||.+- .
T Consensus 264 ~~-----------pvsv---------------------------LrghtgavtaiafsP~~--sss~dgt~~~wd~r~-~ 302 (1113)
T KOG0644|consen 264 GA-----------PVSV---------------------------LRGHTGAVTAIAFSPRA--SSSDDGTCRIWDARL-E 302 (1113)
T ss_pred Cc-----------hHHH---------------------------HhccccceeeeccCccc--cCCCCCceEeccccc-c
Confidence 72 1111 12355666666677644 778899999999982 1
Q ss_pred eeEEecCc-ccccCCccEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEecCCCEEEEEEcCc---EEEEEECCC
Q 000744 1190 STTFYAGT-KKLLGKQTIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFTTGIDIQHLAVNSD---FIFTATKCG 1265 (1306)
Q Consensus 1190 ~~~~~~~~-~~l~gh~~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~~~~V~sla~spd---~Lasgs~Dg 1265 (1306)
. ..|.+. .+..+..-+.++.|..++.-..+++.|+ .-..|.+.--.+ +...+.-+.++.+ +.+++-.+.
T Consensus 303 ~-~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~-ea~n~e~~~l~~-----~~~~lif~t~ssd~~~~~~~ar~~~ 375 (1113)
T KOG0644|consen 303 P-RIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDG-EARNHEFEQLAW-----RSNLLIFVTRSSDLSSIVVTARNDH 375 (1113)
T ss_pred c-cccCCCCCCcccccceeeeeccccccccccccCCc-ccccchhhHhhh-----hccceEEEeccccccccceeeeeee
Confidence 1 112211 1112222566677765555555666676 667765432111 1111111222222 777788888
Q ss_pred cEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCCCc
Q 000744 1266 TIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDGHP 1304 (1306)
Q Consensus 1266 ~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~~ 1304 (1306)
.+.+|++.+|..++.+.+ |.+.++.+.++|-+..
T Consensus 376 ~~~vwnl~~g~l~H~l~g-----hsd~~yvLd~Hpfn~r 409 (1113)
T KOG0644|consen 376 RLCVWNLYTGQLLHNLMG-----HSDEVYVLDVHPFNPR 409 (1113)
T ss_pred Eeeeeecccchhhhhhcc-----cccceeeeeecCCCcH
Confidence 999999999988887764 6778888888885443
No 216
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.15 E-value=2.5e-09 Score=119.27 Aligned_cols=251 Identities=10% Similarity=0.088 Sum_probs=170.4
Q ss_pred cEEEEEeCCCcEEEEeCCCce--------EEcccCCCCEEEEEEeCCEEEEEECCCcEEEEeCCCCc--cceEEEEcccC
Q 000744 1009 KALMNLSSVNATELWHCNEVT--------ELDSSTNGEVLSLIHLKGRVLSSHSDGTIKMWDSGKRV--LRLIQEVREHT 1078 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~~--------~i~~~H~~~V~sl~fspd~LaSgs~Dg~I~vWd~~t~~--~~~i~~l~~H~ 1078 (1306)
++|...+.|..+..+.+.+.. .......++|..+....+.|++|-.+|.+.+|..+.+. -..+..+..|
T Consensus 70 evl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g- 148 (412)
T KOG3881|consen 70 EVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG- 148 (412)
T ss_pred eEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEEecCCcEEEEeccCCccccccceeeecC-
Confidence 344444455555555554311 12233467788888888899999999999999998542 1334444444
Q ss_pred ccEEEEEEcC-CCCEEEEEeCC--CcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEe
Q 000744 1079 RAVTCLYVPS-SGDKLYSGSLD--KTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHI 1155 (1306)
Q Consensus 1079 ~~V~sl~fsp-dg~~L~Sgs~D--gtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~ 1155 (1306)
..+..+.-++ +...+++||.. ..++|||+.+. .+.+..-..+..-.. +.
T Consensus 149 ~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~-~qiw~aKNvpnD~L~----------------Lr----------- 200 (412)
T KOG3881|consen 149 PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS-KQIWSAKNVPNDRLG----------------LR----------- 200 (412)
T ss_pred CceeeeccCCCCCceEecCchhcccceeeeecccc-eeeeeccCCCCcccc----------------ce-----------
Confidence 4566676666 44566779998 88999999886 222221111111111 11
Q ss_pred ccCCCeEEEEEeCC----EEEEEECCCcEEEEECCCCc-eeEEecCcccccCCccEEEEEEeCCcEEEEEEecCCCEEEE
Q 000744 1156 NFNKHVKSLVMTGD----KLYCGCSGYSIQEVDLGNLT-STTFYAGTKKLLGKQTIHSLHMHNGLLFAGGSSVDGTAGKV 1230 (1306)
Q Consensus 1156 ~~~~~V~sl~~s~d----~L~sgs~Dg~I~iwDl~~~~-~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~s~Dg~~I~I 1230 (1306)
..-+++++.|-++ .|++++.-+.+++||.+.+. ++..|.-. .++|+++...|++.++.++..-+ .+..
T Consensus 201 -VPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~-----E~~is~~~l~p~gn~Iy~gn~~g-~l~~ 273 (412)
T KOG3881|consen 201 -VPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFL-----ENPISSTGLTPSGNFIYTGNTKG-QLAK 273 (412)
T ss_pred -eeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccc-----cCcceeeeecCCCcEEEEecccc-hhhe
Confidence 1223445555533 69999999999999999754 45444321 12889999888888888876666 7999
Q ss_pred EECCCCceEEE-Eec-CCCEEEEEEcCc--EEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCC
Q 000744 1231 FSISSKTAVGS-FTT-GIDIQHLAVNSD--FIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVD 1301 (1306)
Q Consensus 1231 WD~~t~~~l~~-l~~-~~~V~sla~spd--~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpd 1301 (1306)
||.++++.... +.+ .+.|.++..+|. +++++|-|..++|+|+++.+.+..... ...++++-+.++
T Consensus 274 FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv------Ks~lt~il~~~~ 342 (412)
T KOG3881|consen 274 FDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV------KSRLTFILLRDD 342 (412)
T ss_pred ecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh------hccccEEEecCC
Confidence 99999998877 554 567999999999 999999999999999999777766552 236777777654
No 217
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.14 E-value=1.7e-09 Score=120.58 Aligned_cols=204 Identities=12% Similarity=0.181 Sum_probs=149.2
Q ss_pred cEEEEEeCCCcEEEEeCCC-----ceEEcccCCCCEEEEEEeC---CEEEEEECC--CcEEEEeCCCCccceEEEEccc-
Q 000744 1009 KALMNLSSVNATELWHCNE-----VTELDSSTNGEVLSLIHLK---GRVLSSHSD--GTIKMWDSGKRVLRLIQEVREH- 1077 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~-----~~~i~~~H~~~V~sl~fsp---d~LaSgs~D--g~I~vWd~~t~~~~~i~~l~~H- 1077 (1306)
..|.+|-.+|.+.+|..+. ...+...-...+..+.-++ ..+++|+.. ..+++||+++. +.+.+-+.-
T Consensus 116 g~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~--~qiw~aKNvp 193 (412)
T KOG3881|consen 116 GTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS--KQIWSAKNVP 193 (412)
T ss_pred CEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccc--eeeeeccCCC
Confidence 6799999999999999872 1112112224455555444 478889999 89999999887 444443321
Q ss_pred --------CccEEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCceeEEEeec-CCCCeEEEEeCCcEEEEEcCCCeEEEE
Q 000744 1078 --------TRAVTCLYVPSS--GDKLYSGSLDKTIRVWSIKPEEIHCLQVHN-VKEAVHELTANAEIACFVSPATGVKVY 1146 (1306)
Q Consensus 1078 --------~~~V~sl~fspd--g~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~-~~~~V~sl~~~~~~v~~s~dg~~I~i~ 1146 (1306)
.-.++++.|-+. ...|++++.-+.+++||++.+. +++..++ ...+++++. ..|+|+
T Consensus 194 nD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR-RPV~~fd~~E~~is~~~-------l~p~gn----- 260 (412)
T KOG3881|consen 194 NDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR-RPVAQFDFLENPISSTG-------LTPSGN----- 260 (412)
T ss_pred CccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC-cceeEeccccCcceeee-------ecCCCc-----
Confidence 125678899887 7899999999999999999753 3333333 223444443 444444
Q ss_pred EecCCEEEeccCCCeEEEEEeCCEEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCC
Q 000744 1147 NWSGAIKHINFNKHVKSLVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDG 1225 (1306)
Q Consensus 1147 ~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg 1225 (1306)
++++|..-|.+..||+++++.... .+.|.. .|+++..+|++.++++++.|.
T Consensus 261 -----------------------~Iy~gn~~g~l~~FD~r~~kl~g~-----~~kg~tGsirsih~hp~~~~las~GLDR 312 (412)
T KOG3881|consen 261 -----------------------FIYTGNTKGQLAKFDLRGGKLLGC-----GLKGITGSIRSIHCHPTHPVLASCGLDR 312 (412)
T ss_pred -----------------------EEEEecccchhheecccCceeecc-----ccCCccCCcceEEEcCCCceEEeeccce
Confidence 789999999999999999987764 233555 899999999999999999998
Q ss_pred CEEEEEECCCCceEEEEecCCCEEEEEEcCc
Q 000744 1226 TAGKVFSISSKTAVGSFTTGIDIQHLAVNSD 1256 (1306)
Q Consensus 1226 ~~I~IWD~~t~~~l~~l~~~~~V~sla~spd 1256 (1306)
.+||+|+.+.+++....-.+.++++-+.++
T Consensus 313 -yvRIhD~ktrkll~kvYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 313 -YVRIHDIKTRKLLHKVYVKSRLTFILLRDD 342 (412)
T ss_pred -eEEEeecccchhhhhhhhhccccEEEecCC
Confidence 899999999887777666667777777554
No 218
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.14 E-value=2.1e-09 Score=130.92 Aligned_cols=228 Identities=13% Similarity=0.138 Sum_probs=152.0
Q ss_pred cEEEEEeCCCcEEEEeCCCceE--------EcccCCCCEEEEEEeCC----EEEEEECCCcEEEEeCCCCcc----ceEE
Q 000744 1009 KALMNLSSVNATELWHCNEVTE--------LDSSTNGEVLSLIHLKG----RVLSSHSDGTIKMWDSGKRVL----RLIQ 1072 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~~~--------i~~~H~~~V~sl~fspd----~LaSgs~Dg~I~vWd~~t~~~----~~i~ 1072 (1306)
.+++.|..+|.|.+||++.... ....|..+|+.+.|..+ -+++++.||.|..|+++.-.. .+..
T Consensus 256 ~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~ 335 (555)
T KOG1587|consen 256 NLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLE 335 (555)
T ss_pred ceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccc
Confidence 7899999999999999975322 34679999999999863 699999999999998864310 0111
Q ss_pred EEc------ccCccEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEE
Q 000744 1073 EVR------EHTRAVTCLYVPS-SGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKV 1145 (1306)
Q Consensus 1073 ~l~------~H~~~V~sl~fsp-dg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i 1145 (1306)
... .-...++++.|.+ +...|+.|+.+|.|..-+-........ +. +.
T Consensus 336 ~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~-----------~~-------~~-------- 389 (555)
T KOG1587|consen 336 SKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE-----------VS-------YK-------- 389 (555)
T ss_pred cccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc-----------cc-------cc--------
Confidence 111 1123689999988 677899999999886533322210000 00 00
Q ss_pred EEecCCEEEeccCCCeEEEEEeC---CEEEEEECCCcEEEEECC-CCceeEEecCcccccCCc-cEEEEEEeCCc-EEEE
Q 000744 1146 YNWSGAIKHINFNKHVKSLVMTG---DKLYCGCSGYSIQEVDLG-NLTSTTFYAGTKKLLGKQ-TIHSLHMHNGL-LFAG 1219 (1306)
Q Consensus 1146 ~~~~~~~~l~~~~~~V~sl~~s~---d~L~sgs~Dg~I~iwDl~-~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~-~lla 1219 (1306)
+......|.++|+++.++| ..+++++ |.++++|... ...++..+. .+. .|++++|+|.. .+++
T Consensus 390 ----~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~------~~~~~v~~vaWSptrpavF~ 458 (555)
T KOG1587|consen 390 ----GHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLD------SSPDYVTDVAWSPTRPAVFA 458 (555)
T ss_pred ----ccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhh------hccceeeeeEEcCcCceEEE
Confidence 0001112566677777764 3455555 9999999887 555554332 333 69999999765 3444
Q ss_pred EEecCCCEEEEEECCCC--ceEEEEe-cCCCEEEEEEcCc--EEEEEECCCcEEEEECCC
Q 000744 1220 GSSVDGTAGKVFSISSK--TAVGSFT-TGIDIQHLAVNSD--FIFTATKCGTIEVWLKER 1274 (1306)
Q Consensus 1220 s~s~Dg~~I~IWD~~t~--~~l~~l~-~~~~V~sla~spd--~Lasgs~Dg~I~IWd~~t 1274 (1306)
++..|| .|.+||+... .++.+.. +....+.+.|+++ .|++|...|++++|++..
T Consensus 459 ~~d~~G-~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 459 TVDGDG-NLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred EEcCCC-ceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 444577 7999999653 3444444 2333567777875 899999999999999964
No 219
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=2.2e-10 Score=130.23 Aligned_cols=266 Identities=14% Similarity=0.141 Sum_probs=182.9
Q ss_pred eEEcccCCCCEEEEEEeC--CEEEEEECCCcEEEEeCCCCccceEEEE-cccCccEEEEEEcC--CCCEEEEEeCCCcEE
Q 000744 1029 TELDSSTNGEVLSLIHLK--GRVLSSHSDGTIKMWDSGKRVLRLIQEV-REHTRAVTCLYVPS--SGDKLYSGSLDKTIR 1103 (1306)
Q Consensus 1029 ~~i~~~H~~~V~sl~fsp--d~LaSgs~Dg~I~vWd~~t~~~~~i~~l-~~H~~~V~sl~fsp--dg~~L~Sgs~DgtI~ 1103 (1306)
+..+..|.+.|..|.|+. +.|+|||.|..|.+||+..+ .....+ .+|...|..-.|-| +...+++++.||.|+
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~--~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSG--SPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhcc--CcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 344578999999999996 59999999999999999887 444444 58999999888988 346899999999999
Q ss_pred EEEcCCCc-ee-EEEeecCCCCeEEEEe----CCcEEEEEcCCCeEEEEEecCC---EEEe---ccCC---CeEEEEEeC
Q 000744 1104 VWSIKPEE-IH-CLQVHNVKEAVHELTA----NAEIACFVSPATGVKVYNWSGA---IKHI---NFNK---HVKSLVMTG 1168 (1306)
Q Consensus 1104 VWdi~~~~-~~-~i~~~~~~~~V~sl~~----~~~~v~~s~dg~~I~i~~~~~~---~~l~---~~~~---~V~sl~~s~ 1168 (1306)
+=.+.... .. ......|.++|..++. ...+...+.|+. +.-.+.... .++. .+.. ...+++..|
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~-v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAV-VFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP 291 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccc-eeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence 88765433 22 3344557799999887 223334444444 444444311 1111 1222 456677664
Q ss_pred ---CEEEEEECCCcEEEEECCCCc------eeEEecCcccccCCc-cEEEEEEe-CCcEEEEEEecCCCEEEEEECCC--
Q 000744 1169 ---DKLYCGCSGYSIQEVDLGNLT------STTFYAGTKKLLGKQ-TIHSLHMH-NGLLFAGGSSVDGTAGKVFSISS-- 1235 (1306)
Q Consensus 1169 ---d~L~sgs~Dg~I~iwDl~~~~------~~~~~~~~~~l~gh~-~I~sl~~s-~~~~llas~s~Dg~~I~IWD~~t-- 1235 (1306)
+.+++|+.|..+++||.+.-. .+..|.++.-..... .|++++|+ +++-++++.. |. .|++|....
T Consensus 292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn-De-~IYLF~~~~~~ 369 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN-DE-DIYLFNKSMGD 369 (559)
T ss_pred CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec-cc-ceEEecccccc
Confidence 369999999999999987532 234444433222222 89999998 7777777774 65 599995432
Q ss_pred C----------ceEEE-EecCC---CEEEEEEcC-c--EEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEE
Q 000744 1236 K----------TAVGS-FTTGI---DIQHLAVNS-D--FIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGT 1298 (1306)
Q Consensus 1236 ~----------~~l~~-l~~~~---~V~sla~sp-d--~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slaf 1298 (1306)
| ..+.. +++|. .|..+-|-. . |+++||+-|.|.||+-.+++.+.-+.+ ..| -|+|+.-
T Consensus 370 G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Meg---Dr~--VVNCLEp 444 (559)
T KOG1334|consen 370 GSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEG---DRH--VVNCLEP 444 (559)
T ss_pred CCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhc---ccc--eEeccCC
Confidence 2 22333 55443 388888765 3 999999999999999999998888875 333 7777776
Q ss_pred cCCCCc
Q 000744 1299 GVDGHP 1304 (1306)
Q Consensus 1299 Spdg~~ 1304 (1306)
+|---.
T Consensus 445 HP~~Pv 450 (559)
T KOG1334|consen 445 HPHLPV 450 (559)
T ss_pred CCCCch
Confidence 664433
No 220
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.13 E-value=1.3e-08 Score=123.84 Aligned_cols=229 Identities=9% Similarity=0.054 Sum_probs=143.2
Q ss_pred CcEEEEeCCCc-eEEcccCCCCEEEEEEeCC--EEEEEE---CCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCC
Q 000744 1018 NATELWHCNEV-TELDSSTNGEVLSLIHLKG--RVLSSH---SDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGD 1091 (1306)
Q Consensus 1018 g~I~IWd~~~~-~~i~~~H~~~V~sl~fspd--~LaSgs---~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~ 1091 (1306)
..|.+||.... ......+...+.+..|+|| .|+..+ .+..|.+||+.++..+.+..+.+| +....|+|||+
T Consensus 179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~---~~~~~~SPDG~ 255 (429)
T PRK03629 179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH---NGAPAFSPDGS 255 (429)
T ss_pred eeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCC---cCCeEECCCCC
Confidence 36888988753 3334556778999999997 555443 345799999988843333334443 45689999999
Q ss_pred EEEEE-eCCC--cEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeC
Q 000744 1092 KLYSG-SLDK--TIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTG 1168 (1306)
Q Consensus 1092 ~L~Sg-s~Dg--tI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~ 1168 (1306)
.|+.. +.+| .|.+||+.+++...+. .+...+.... |+|||+
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~~~~lt--~~~~~~~~~~-------wSPDG~--------------------------- 299 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQIRQVT--DGRSNNTEPT-------WFPDSQ--------------------------- 299 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEEEcc--CCCCCcCceE-------ECCCCC---------------------------
Confidence 88754 4455 4888999887533222 2222333443 777776
Q ss_pred CEEEEEEC-CC--cEEEEECCCCceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCC--CEEEEEECCCCceEEEE
Q 000744 1169 DKLYCGCS-GY--SIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDG--TAGKVFSISSKTAVGSF 1242 (1306)
Q Consensus 1169 d~L~sgs~-Dg--~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg--~~I~IWD~~t~~~l~~l 1242 (1306)
.|+..+. ++ .|+.+|+.++..... . .+. ......|+|++.+++..+.++ ..|.+||+.+++. ..+
T Consensus 300 -~I~f~s~~~g~~~Iy~~d~~~g~~~~l-t------~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~L 370 (429)
T PRK03629 300 -NLAYTSDQAGRPQVYKVNINGGAPQRI-T------WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVL 370 (429)
T ss_pred -EEEEEeCCCCCceEEEEECCCCCeEEe-e------cCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEe
Confidence 3444443 33 455557776654332 1 111 345678887765554433332 2588999988764 344
Q ss_pred ecCCCEEEEEEcCc--EEEEEECCCc---EEEEECCCCeEEEEEecccCCCCCCCeEEEEEcC
Q 000744 1243 TTGIDIQHLAVNSD--FIFTATKCGT---IEVWLKERVTRVASVKANNSGGGHAKITCLGTGV 1300 (1306)
Q Consensus 1243 ~~~~~V~sla~spd--~Lasgs~Dg~---I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSp 1300 (1306)
.......+..|+|| +|+.++.++. +.+|++. |.....+.. +.+.+...+|+|
T Consensus 371 t~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~-----~~~~~~~p~Wsp 427 (429)
T PRK03629 371 TDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPA-----TDGQVKFPAWSP 427 (429)
T ss_pred CCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECcc-----CCCCcCCcccCC
Confidence 43333456789999 7777777754 6777874 555666653 556788899987
No 221
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.12 E-value=2.8e-08 Score=117.75 Aligned_cols=283 Identities=12% Similarity=0.129 Sum_probs=170.1
Q ss_pred EEEEeCCCcEEEEeCCCceEEc--ccCCCCEEEEEEeCC--EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEE
Q 000744 1011 LMNLSSVNATELWHCNEVTELD--SSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYV 1086 (1306)
Q Consensus 1011 Lasgs~Dg~I~IWd~~~~~~i~--~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~f 1086 (1306)
+++-..+|.|.+.|..+...+. ......-..+.|++| ++++++.||.|.+||+.++ +.+.+++... ...++++
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~--~~v~~i~~G~-~~~~i~~ 85 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATG--KVVATIKVGG-NPRGIAV 85 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSS--SEEEEEE-SS-EEEEEEE
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcc--cEEEEEecCC-CcceEEE
Confidence 3566678999999998643332 222222344678885 8888999999999999999 7888887644 4678999
Q ss_pred cCCCCEEEEEe-CCCcEEEEEcCCCc-eeEEEeec-----CCCCeEEEEe---CCcEEEEEcCCCeEEEEEecCC----E
Q 000744 1087 PSSGDKLYSGS-LDKTIRVWSIKPEE-IHCLQVHN-----VKEAVHELTA---NAEIACFVSPATGVKVYNWSGA----I 1152 (1306)
Q Consensus 1087 spdg~~L~Sgs-~DgtI~VWdi~~~~-~~~i~~~~-----~~~~V~sl~~---~~~~v~~s~dg~~I~i~~~~~~----~ 1152 (1306)
++||++++++. .++++.|+|.++.+ .+.+.... ....+..+.. .+.+++..-+...|.+.++... .
T Consensus 86 s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~ 165 (369)
T PF02239_consen 86 SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKV 165 (369)
T ss_dssp --TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEE
T ss_pred cCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccce
Confidence 99999998775 58999999999875 33333322 1234556543 3334444555555666665532 2
Q ss_pred EEeccCCCeEEEEEeCC--EEE-EEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEE-------EEe----CCcEE
Q 000744 1153 KHINFNKHVKSLVMTGD--KLY-CGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSL-------HMH----NGLLF 1217 (1306)
Q Consensus 1153 ~l~~~~~~V~sl~~s~d--~L~-sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl-------~~s----~~~~l 1217 (1306)
.............|+++ +++ +...++.|-++|..+++.+......+. .|. ++..+ .|. ....+
T Consensus 166 ~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~--p~~~~~~~~php~~g~vw~~~~~~~~~~ 243 (369)
T PF02239_consen 166 TTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKK--PHPGPGANFPHPGFGPVWATSGLGYFAI 243 (369)
T ss_dssp EEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSS--BEETTEEEEEETTTEEEEEEEBSSSSEE
T ss_pred eeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeecccc--ccccccccccCCCcceEEeeccccceec
Confidence 23445667788888876 444 445678899999999887765432111 111 22221 121 12222
Q ss_pred EEEEecCCCEEEEEECCCCceEEEEecCCCEEEEEEcCc--EEEEE----ECCCcEEEEECCCCeEEEEEecccCCCCCC
Q 000744 1218 AGGSSVDGTAGKVFSISSKTAVGSFTTGIDIQHLAVNSD--FIFTA----TKCGTIEVWLKERVTRVASVKANNSGGGHA 1291 (1306)
Q Consensus 1218 las~s~Dg~~I~IWD~~t~~~l~~l~~~~~V~sla~spd--~Lasg----s~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~ 1291 (1306)
...+ .| .+.+||..+++.++++...+.-.-+..||+ +++.. ...++|.++|.++.+.+.++.. + ...
T Consensus 244 ~~ig-~~--~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~---~-~~~ 316 (369)
T PF02239_consen 244 PLIG-TD--PVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITP---G-PGK 316 (369)
T ss_dssp EEEE-----TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHH---H-HT-
T ss_pred cccc-CC--ccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEec---c-CCC
Confidence 2222 23 367899999999999995444377888998 77776 4558999999999988888763 1 113
Q ss_pred CeEEEEEcCCCCcc
Q 000744 1292 KITCLGTGVDGHPY 1305 (1306)
Q Consensus 1292 ~V~slafSpdg~~L 1305 (1306)
++..+.|++||+++
T Consensus 317 ~~~h~ef~~dG~~v 330 (369)
T PF02239_consen 317 RVVHMEFNPDGKEV 330 (369)
T ss_dssp -EEEEEE-TTSSEE
T ss_pred cEeccEECCCCCEE
Confidence 59999999999864
No 222
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.11 E-value=2.4e-09 Score=130.49 Aligned_cols=194 Identities=9% Similarity=-0.011 Sum_probs=125.1
Q ss_pred CCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCceeEEEeecCCCCeEEEEeCC
Q 000744 1055 DGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLD---KTIRVWSIKPEEIHCLQVHNVKEAVHELTANA 1131 (1306)
Q Consensus 1055 Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~D---gtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~ 1131 (1306)
+..|.+||.... . .+.+..|...+.+..|+|||+.|+.++.+ ..|.+||+.+++...+.... +......
T Consensus 183 ~~~i~i~d~dg~--~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~--g~~~~~~--- 254 (429)
T PRK01742 183 PYEVRVADYDGF--N-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR--GHNGAPA--- 254 (429)
T ss_pred eEEEEEECCCCC--C-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC--CccCcee---
Confidence 478999999765 2 45667788899999999999999987754 36999999887544443322 2222333
Q ss_pred cEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCCEEEEE-ECCCcEE--EEECCCCceeEEecCcccccCCc-cEE
Q 000744 1132 EIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGDKLYCG-CSGYSIQ--EVDLGNLTSTTFYAGTKKLLGKQ-TIH 1207 (1306)
Q Consensus 1132 ~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sg-s~Dg~I~--iwDl~~~~~~~~~~~~~~l~gh~-~I~ 1207 (1306)
|+|||+ +|+.+ +.+|.+. +||+.++.... +..+. .+.
T Consensus 255 ----wSPDG~----------------------------~La~~~~~~g~~~Iy~~d~~~~~~~~-------lt~~~~~~~ 295 (429)
T PRK01742 255 ----FSPDGS----------------------------RLAFASSKDGVLNIYVMGANGGTPSQ-------LTSGAGNNT 295 (429)
T ss_pred ----ECCCCC----------------------------EEEEEEecCCcEEEEEEECCCCCeEe-------eccCCCCcC
Confidence 777776 44443 4567654 45776665433 22333 677
Q ss_pred EEEEeCCcEE-EEEEecCCCEEEEEECCCC-ceEEEEecCCCEEEEEEcCc--EEEEEECCCcEEEEECCCCeEEEEEec
Q 000744 1208 SLHMHNGLLF-AGGSSVDGTAGKVFSISSK-TAVGSFTTGIDIQHLAVNSD--FIFTATKCGTIEVWLKERVTRVASVKA 1283 (1306)
Q Consensus 1208 sl~~s~~~~l-las~s~Dg~~I~IWD~~t~-~~l~~l~~~~~V~sla~spd--~Lasgs~Dg~I~IWd~~tg~~l~~l~~ 1283 (1306)
...|+|++.. +.++..++ ...||++... .....+.+. . .+..|+|| +|+.++.++ +.+||+.+++... +..
T Consensus 296 ~~~wSpDG~~i~f~s~~~g-~~~I~~~~~~~~~~~~l~~~-~-~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~-lt~ 370 (429)
T PRK01742 296 EPSWSPDGQSILFTSDRSG-SPQVYRMSASGGGASLVGGR-G-YSAQISADGKTLVMINGDN-VVKQDLTSGSTEV-LSS 370 (429)
T ss_pred CEEECCCCCEEEEEECCCC-CceEEEEECCCCCeEEecCC-C-CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEE-ecC
Confidence 8899987754 44443455 6788876432 222333332 2 46789998 777776665 6669999887543 321
Q ss_pred ccCCCCCCCeEEEEEcCCCCccC
Q 000744 1284 NNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1284 ~~~~~~~~~V~slafSpdg~~La 1306 (1306)
. . ...++.|+|||++|+
T Consensus 371 ---~-~--~~~~~~~sPdG~~i~ 387 (429)
T PRK01742 371 ---T-F--LDESPSISPNGIMII 387 (429)
T ss_pred ---C-C--CCCCceECCCCCEEE
Confidence 1 1 235678999999874
No 223
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.10 E-value=1.5e-08 Score=110.66 Aligned_cols=219 Identities=14% Similarity=0.130 Sum_probs=146.7
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEe-ecCCCCeEEEEe-CCcEEEEEcCC------CeEEEEEecCC
Q 000744 1080 AVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQV-HNVKEAVHELTA-NAEIACFVSPA------TGVKVYNWSGA 1151 (1306)
Q Consensus 1080 ~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~-~~~~~~V~sl~~-~~~~v~~s~dg------~~I~i~~~~~~ 1151 (1306)
...+++|+.|...++.|..+| .+||+.+.-+..-... ....-.+..+-| .+.++.++..+ +.+.+||-...
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 345699999998888888776 6999987643111111 111122222223 23333333221 24778884433
Q ss_pred --EEEeccCCCeEEEEEeCCEEEEEECCCcEEEEECC-CCceeEEecCcccccCCccEEEEEEeCCcEEEEEEecCCCEE
Q 000744 1152 --IKHINFNKHVKSLVMTGDKLYCGCSGYSIQEVDLG-NLTSTTFYAGTKKLLGKQTIHSLHMHNGLLFAGGSSVDGTAG 1228 (1306)
Q Consensus 1152 --~~l~~~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~-~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~s~Dg~~I 1228 (1306)
+.-....++|.+|.+.++.|++.- .+.|++|... +.+.+..+... .......+++-+-+..+++.-+..-|.|
T Consensus 86 ~~i~el~f~~~I~~V~l~r~riVvvl-~~~I~VytF~~n~k~l~~~et~---~NPkGlC~~~~~~~k~~LafPg~k~Gqv 161 (346)
T KOG2111|consen 86 RCIIELSFNSEIKAVKLRRDRIVVVL-ENKIYVYTFPDNPKLLHVIETR---SNPKGLCSLCPTSNKSLLAFPGFKTGQV 161 (346)
T ss_pred cEEEEEEeccceeeEEEcCCeEEEEe-cCeEEEEEcCCChhheeeeecc---cCCCceEeecCCCCceEEEcCCCccceE
Confidence 333467899999999999988775 5789999987 44555544311 1111344444444445555444444589
Q ss_pred EEEECCCCce--EEEEe-cCCCEEEEEEcCc--EEEEEECCCc-EEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCC
Q 000744 1229 KVFSISSKTA--VGSFT-TGIDIQHLAVNSD--FIFTATKCGT-IEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDG 1302 (1306)
Q Consensus 1229 ~IWD~~t~~~--l~~l~-~~~~V~sla~spd--~Lasgs~Dg~-I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg 1302 (1306)
+|-|+...+. ...+. |.+.|.|++.+-+ .+||+|..|+ |+|||..+|+.++.+.. |..+..|++++||||+
T Consensus 162 Qi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR---G~d~A~iy~iaFSp~~ 238 (346)
T KOG2111|consen 162 QIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRR---GVDRADIYCIAFSPNS 238 (346)
T ss_pred EEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeec---CCchheEEEEEeCCCc
Confidence 9999977555 23444 7788999999987 9999999997 69999999999999986 7777899999999999
Q ss_pred CccC
Q 000744 1303 HPYK 1306 (1306)
Q Consensus 1303 ~~La 1306 (1306)
++||
T Consensus 239 s~La 242 (346)
T KOG2111|consen 239 SWLA 242 (346)
T ss_pred cEEE
Confidence 9985
No 224
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.10 E-value=3.3e-09 Score=121.49 Aligned_cols=174 Identities=13% Similarity=0.175 Sum_probs=128.5
Q ss_pred cccccccccccccc-----cEEEEEeCCCcEEEEeCCC-ceEEcccCCCCEEEEEEeCC---EEEEEECCCcEEEEeCCC
Q 000744 995 RKLKKYSAVVTDIQ-----KALMNLSSVNATELWHCNE-VTELDSSTNGEVLSLIHLKG---RVLSSHSDGTIKMWDSGK 1065 (1306)
Q Consensus 995 ~~l~ghs~~V~~i~-----~~Lasgs~Dg~I~IWd~~~-~~~i~~~H~~~V~sl~fspd---~LaSgs~Dg~I~vWd~~t 1065 (1306)
+....|.+.+.+-. .-|.|++.||.|++|.-.+ ...+......+|.|++|.|+ .+++.+. .+.|=-+..
T Consensus 98 ~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~--h~~IKpL~~ 175 (737)
T KOG1524|consen 98 RSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGG--HISIKPLAA 175 (737)
T ss_pred hhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCC--eEEEeeccc
Confidence 34455666665443 5689999999999999765 34444556788999999985 6666554 444444444
Q ss_pred CccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEE
Q 000744 1066 RVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKV 1145 (1306)
Q Consensus 1066 ~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i 1145 (1306)
. ..+-..+.|.+-|.++.|++.++.++||+.|-..+|||-... ..+....|..+|++++ |.|+ +...+
T Consensus 176 n--~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~--~Lf~S~~~ey~ITSva-------~npd-~~~~v 243 (737)
T KOG1524|consen 176 N--SKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA--NLFTSAAEEYAITSVA-------FNPE-KDYLL 243 (737)
T ss_pred c--cceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCc--ccccCChhccceeeee-------eccc-cceee
Confidence 4 446678899999999999999999999999999999998765 3333445678999999 6777 55667
Q ss_pred EEecCCEEEeccCCCeEEEEEeCC--EEEEEECCCcEEE
Q 000744 1146 YNWSGAIKHINFNKHVKSLVMTGD--KLYCGCSGYSIQE 1182 (1306)
Q Consensus 1146 ~~~~~~~~l~~~~~~V~sl~~s~d--~L~sgs~Dg~I~i 1182 (1306)
|+++....-....+.|..++|++| .+++|+..|.+.+
T Consensus 244 ~S~nt~R~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 244 WSYNTARFSSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eeeeeeeecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 776654433335678999999977 5888888887654
No 225
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.09 E-value=5.4e-11 Score=93.70 Aligned_cols=39 Identities=33% Similarity=0.754 Sum_probs=31.3
Q ss_pred CcccccccCCcEEcCCCCcccHHHHHHHHHcCC---CCCCCC
Q 000744 346 CPITGQIFNDPVTLETGQTYERKAIQEWLKRGN---TTCPIT 384 (1306)
Q Consensus 346 CpIc~~l~~dPv~~~cGhtfc~~cI~~~~~~~~---~~CP~c 384 (1306)
||||+++|+|||+++|||+||+.||.++++... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999998533 469987
No 226
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.08 E-value=2.1e-10 Score=129.65 Aligned_cols=208 Identities=14% Similarity=0.126 Sum_probs=161.3
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEe-CCcEEEEEcCCCeEEEEEecCC-EEEeccC
Q 000744 1081 VTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTA-NAEIACFVSPATGVKVYNWSGA-IKHINFN 1158 (1306)
Q Consensus 1081 V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~-~~~~v~~s~dg~~I~i~~~~~~-~~l~~~~ 1158 (1306)
-+.+.++.+|.+++.|+.-|.|-.+|..++++.+-.. ....|.++.| ++..++.....+++.+|+-+|+ ...+.-.
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~--v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~ 209 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN--VMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRH 209 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeee--hhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhc
Confidence 4578899999999999999999999999986444333 3477888888 4444444556667888888765 4445566
Q ss_pred CCeEEEEEeCCE--EEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCC
Q 000744 1159 KHVKSLVMTGDK--LYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISS 1235 (1306)
Q Consensus 1159 ~~V~sl~~s~d~--L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t 1235 (1306)
..|..+.|-|.+ |++++..|.++.-|+.+|+.+..+. ... .+..+.-+|-+-++..|...| +|.+|...+
T Consensus 210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~------t~~G~~~vm~qNP~NaVih~GhsnG-tVSlWSP~s 282 (545)
T KOG1272|consen 210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIR------TGAGRTDVMKQNPYNAVIHLGHSNG-TVSLWSPNS 282 (545)
T ss_pred CchhhhcccchhheeeecccCCceEEEeechhhhhHHHH------ccCCccchhhcCCccceEEEcCCCc-eEEecCCCC
Confidence 788889999874 6788889999999999999887543 122 677778888888888876666 999999999
Q ss_pred CceEEEEe-cCCCEEEEEEcCc--EEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCCC
Q 000744 1236 KTAVGSFT-TGIDIQHLAVNSD--FIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDGH 1303 (1306)
Q Consensus 1236 ~~~l~~l~-~~~~V~sla~spd--~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~ 1303 (1306)
.+++..+. |.++|.+|+++++ |++|.+.|..++|||+++...+.++.. ..+...++||..|-
T Consensus 283 kePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t------p~~a~~ls~Sqkgl 347 (545)
T KOG1272|consen 283 KEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT------PHPASNLSLSQKGL 347 (545)
T ss_pred cchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec------CCCccccccccccc
Confidence 88766654 7788999999998 999999999999999998776666652 12556677776654
No 227
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.06 E-value=6e-09 Score=129.68 Aligned_cols=215 Identities=19% Similarity=0.195 Sum_probs=152.7
Q ss_pred EeCCCCccceEEEEcccCccEEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCc-----eeEEEeec-CCCCeEEEEe---C
Q 000744 1061 WDSGKRVLRLIQEVREHTRAVTCLYVPSSG-DKLYSGSLDKTIRVWSIKPEE-----IHCLQVHN-VKEAVHELTA---N 1130 (1306)
Q Consensus 1061 Wd~~t~~~~~i~~l~~H~~~V~sl~fspdg-~~L~Sgs~DgtI~VWdi~~~~-----~~~i~~~~-~~~~V~sl~~---~ 1130 (1306)
|+.++ ..+.++..|...|..++.++.. .+|+|||.||+||+||.+.-. .++..++. ...++..+.+ +
T Consensus 1034 W~p~G---~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~ 1110 (1431)
T KOG1240|consen 1034 WNPRG---ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG 1110 (1431)
T ss_pred CCccc---eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC
Confidence 77754 6889999999999999998854 999999999999999987522 33444443 5567777765 5
Q ss_pred CcEEEEEcCCCeEEEEEecC--CEEE-------ec--cCCCeEEE-EEe---CC-EEEEEECCCcEEEEECCCCceeEEe
Q 000744 1131 AEIACFVSPATGVKVYNWSG--AIKH-------IN--FNKHVKSL-VMT---GD-KLYCGCSGYSIQEVDLGNLTSTTFY 1194 (1306)
Q Consensus 1131 ~~~v~~s~dg~~I~i~~~~~--~~~l-------~~--~~~~V~sl-~~s---~d-~L~sgs~Dg~I~iwDl~~~~~~~~~ 1194 (1306)
+.+++.+.||. |.+...+- ..+. .+ ..+.+.++ +|. .. .++.+..-+.|..||+++.....+.
T Consensus 1111 ~~~Av~t~DG~-v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~l 1189 (1431)
T KOG1240|consen 1111 DQFAVSTKDGS-VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRL 1189 (1431)
T ss_pred CeEEEEcCCCe-EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhh
Confidence 55665655665 77766663 1111 11 12333333 333 22 4777888899999999987655543
Q ss_pred cCcccccCCccEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEec--CCCEEEEEEcCc-----E-EEEEE-CCC
Q 000744 1195 AGTKKLLGKQTIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFTT--GIDIQHLAVNSD-----F-IFTAT-KCG 1265 (1306)
Q Consensus 1195 ~~~~~l~gh~~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~--~~~V~sla~spd-----~-Lasgs-~Dg 1265 (1306)
+.. ..|..|++++.++.+.+++.|...| .+-+||++-+..+.++.+ +.+|+.+..+|- . +.+|+ ..+
T Consensus 1190 k~~---~~hG~vTSi~idp~~~WlviGts~G-~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~n 1265 (1431)
T KOG1240|consen 1190 KNQ---LRHGLVTSIVIDPWCNWLVIGTSRG-QLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNN 1265 (1431)
T ss_pred hcC---ccccceeEEEecCCceEEEEecCCc-eEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCC
Confidence 311 1333899999999988888887666 899999999999888874 567888877753 4 44444 578
Q ss_pred cEEEEECCCCeEEEEEec
Q 000744 1266 TIEVWLKERVTRVASVKA 1283 (1306)
Q Consensus 1266 ~I~IWd~~tg~~l~~l~~ 1283 (1306)
.|.+|++.+|.+-.++-.
T Consensus 1266 evs~wn~~~g~~~~vl~~ 1283 (1431)
T KOG1240|consen 1266 EVSTWNMETGLRQTVLWA 1283 (1431)
T ss_pred ceeeeecccCcceEEEEc
Confidence 999999999988887764
No 228
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.05 E-value=8.6e-09 Score=113.19 Aligned_cols=235 Identities=14% Similarity=0.177 Sum_probs=155.0
Q ss_pred cccccccccccccccc-----cEEEEEeCCCcEEEEeCCCce----EEcccCCCCEEEEEEeCC--EEEEEECCCcEEEE
Q 000744 993 TLRKLKKYSAVVTDIQ-----KALMNLSSVNATELWHCNEVT----ELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMW 1061 (1306)
Q Consensus 993 ~l~~l~ghs~~V~~i~-----~~Lasgs~Dg~I~IWd~~~~~----~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vW 1061 (1306)
.++.++||.+.|++.. .-+.+.+.|.++|||--.... .+...-..+++++.++++ .|+.|-..|++.-+
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtef 95 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEF 95 (404)
T ss_pred hhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEE
Confidence 4677888888887654 679999999999999765422 222333677999999986 89999999999988
Q ss_pred eCCCC--ccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcC
Q 000744 1062 DSGKR--VLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSP 1139 (1306)
Q Consensus 1062 d~~t~--~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~d 1139 (1306)
.+... +....+.+..|...|..+-|+...+++++.+.|..+.--..+.+. .+..+......+++.+.-.....+..
T Consensus 96 s~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~--~lg~Y~~~~~~t~~~~d~~~~fvGd~ 173 (404)
T KOG1409|consen 96 ALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGN--RLGGYNFETPASALQFDALYAFVGDH 173 (404)
T ss_pred EhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCC--cccceEeeccCCCCceeeEEEEeccc
Confidence 76421 114566777899999999999999999999999887544444442 11111000111111110001112211
Q ss_pred CCeEEEEEec-----CCEEEeccCCCeEEEEEeCC--EEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEE
Q 000744 1140 ATGVKVYNWS-----GAIKHINFNKHVKSLVMTGD--KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHM 1211 (1306)
Q Consensus 1140 g~~I~i~~~~-----~~~~l~~~~~~V~sl~~s~d--~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~ 1211 (1306)
+..+...... ....+-+|.+.+.+++|.+. .+++|..|..+.+||+..++-..- .+.+|. .|..+..
T Consensus 174 ~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~-----el~gh~~kV~~l~~ 248 (404)
T KOG1409|consen 174 SGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAY-----ELQGHNDKVQALSY 248 (404)
T ss_pred ccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceee-----eeccchhhhhhhhh
Confidence 2223322222 11234468999999999965 689999999999999976554331 355777 7777776
Q ss_pred eCCcEEEEEEecCCCEEEEEECCC
Q 000744 1212 HNGLLFAGGSSVDGTAGKVFSISS 1235 (1306)
Q Consensus 1212 s~~~~llas~s~Dg~~I~IWD~~t 1235 (1306)
-+-...+.+.+.|| -|.+||++.
T Consensus 249 ~~~t~~l~S~~edg-~i~~w~mn~ 271 (404)
T KOG1409|consen 249 AQHTRQLISCGEDG-GIVVWNMNV 271 (404)
T ss_pred hhhheeeeeccCCC-eEEEEeccc
Confidence 65555555666788 699999854
No 229
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.04 E-value=2.1e-08 Score=122.48 Aligned_cols=230 Identities=13% Similarity=0.055 Sum_probs=142.5
Q ss_pred CcEEEEeCCCc-eEEcccCCCCEEEEEEeCC--EEEEEECC---CcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCC
Q 000744 1018 NATELWHCNEV-TELDSSTNGEVLSLIHLKG--RVLSSHSD---GTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGD 1091 (1306)
Q Consensus 1018 g~I~IWd~~~~-~~i~~~H~~~V~sl~fspd--~LaSgs~D---g~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~ 1091 (1306)
..|.+||.... ......|...+.+..|+|| .|+.++.+ ..|.+||+.++..+ .+..+.+...+..|+|||+
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~---~l~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE---LVASFRGINGAPSFSPDGR 260 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE---EeccCCCCccCceECCCCC
Confidence 46889998653 3345567788999999996 67766643 46999999887322 2333444556789999998
Q ss_pred EEE-EEeCCC--cEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeC
Q 000744 1092 KLY-SGSLDK--TIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTG 1168 (1306)
Q Consensus 1092 ~L~-Sgs~Dg--tI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~ 1168 (1306)
.++ +.+.+| .|.+||+.+++...+. .+........ |++||+
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~lt--~~~~~~~~~~-------~spDG~--------------------------- 304 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQLTRLT--NHFGIDTEPT-------WAPDGK--------------------------- 304 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCeEECc--cCCCCccceE-------ECCCCC---------------------------
Confidence 775 556665 5899999887533222 1112223333 677776
Q ss_pred CEEEEEE-CCC--cEEEEECCCCceeEEecCcccccCCccEEEEEEeCCcEEEEEEecCC--CEEEEEECCCCceEEEEe
Q 000744 1169 DKLYCGC-SGY--SIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLLFAGGSSVDG--TAGKVFSISSKTAVGSFT 1243 (1306)
Q Consensus 1169 d~L~sgs-~Dg--~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~s~Dg--~~I~IWD~~t~~~l~~l~ 1243 (1306)
+++.++ .+| .|+++|+.+++...... .+. ......|+|++..++..+.++ ..|.+||+.+++.. .+.
T Consensus 305 -~l~f~sd~~g~~~iy~~dl~~g~~~~lt~-----~g~-~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt 376 (433)
T PRK04922 305 -SIYFTSDRGGRPQIYRVAASGGSAERLTF-----QGN-YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT 376 (433)
T ss_pred -EEEEEECCCCCceEEEEECCCCCeEEeec-----CCC-CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC
Confidence 344333 233 37777877766443211 111 334678997776555443332 25999999887754 444
Q ss_pred cCCCEEEEEEcCc--EEEEEEC---CCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcC
Q 000744 1244 TGIDIQHLAVNSD--FIFTATK---CGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGV 1300 (1306)
Q Consensus 1244 ~~~~V~sla~spd--~Lasgs~---Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSp 1300 (1306)
+........|+|| +++..+. .+.|.+|+... .....+.. +.+.+...+|+|
T Consensus 377 ~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~-----~~g~~~~p~wsp 432 (433)
T PRK04922 377 PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG-RVRQRLVS-----ADGEVREPAWSP 432 (433)
T ss_pred CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEEccc-----CCCCCCCCccCC
Confidence 4334567789998 5554443 24688888854 44555542 334677788887
No 230
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.04 E-value=2.6e-10 Score=128.94 Aligned_cols=240 Identities=9% Similarity=0.060 Sum_probs=172.3
Q ss_pred cEEEEEeCCCcEEEEeCCCceEEcc-cCCCCEEEEEEeCC-EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEE
Q 000744 1009 KALMNLSSVNATELWHCNEVTELDS-STNGEVLSLIHLKG-RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYV 1086 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~~~i~~-~H~~~V~sl~fspd-~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~f 1086 (1306)
.+|+-|+..|.|..+|..+..-... .-...|.++.|--+ .+++......+.|||-.. ..++.++.|. .|..+.|
T Consensus 142 rhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~G---tElHClk~~~-~v~rLeF 217 (545)
T KOG1272|consen 142 RHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNG---TELHCLKRHI-RVARLEF 217 (545)
T ss_pred cEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCC---cEEeehhhcC-chhhhcc
Confidence 5688888889999999887543332 23667888988653 555556677899999865 4677777664 6899999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCCceeEEEeec-CCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEE
Q 000744 1087 PSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHN-VKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLV 1165 (1306)
Q Consensus 1087 spdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~-~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~ 1165 (1306)
-|..-+|++++..|.++--|+.+|+ .+..+. ..+.+.. ++
T Consensus 218 LPyHfLL~~~~~~G~L~Y~DVS~Gk--lVa~~~t~~G~~~v-------------------------------------m~ 258 (545)
T KOG1272|consen 218 LPYHFLLVAASEAGFLKYQDVSTGK--LVASIRTGAGRTDV-------------------------------------MK 258 (545)
T ss_pred cchhheeeecccCCceEEEeechhh--hhHHHHccCCccch-------------------------------------hh
Confidence 9999899999999999999999984 221111 1122222 22
Q ss_pred EeCC--EEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEE
Q 000744 1166 MTGD--KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSF 1242 (1306)
Q Consensus 1166 ~s~d--~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l 1242 (1306)
-+|- .+-+|...|+|.+|......++. ++..|. +|.+|++++++.|.++++.|. .++|||+++...+.++
T Consensus 259 qNP~NaVih~GhsnGtVSlWSP~skePLv------KiLcH~g~V~siAv~~~G~YMaTtG~Dr-~~kIWDlR~~~ql~t~ 331 (545)
T KOG1272|consen 259 QNPYNAVIHLGHSNGTVSLWSPNSKEPLV------KILCHRGPVSSIAVDRGGRYMATTGLDR-KVKIWDLRNFYQLHTY 331 (545)
T ss_pred cCCccceEEEcCCCceEEecCCCCcchHH------HHHhcCCCcceEEECCCCcEEeeccccc-ceeEeeecccccccee
Confidence 2221 36688899999999999888776 455677 999999999999999999998 7999999998877777
Q ss_pred ecCCCEEEEEEcCcEEEEEECCCcEEEEE-CCCCe-EEEEEecccCCCCC--CCeEEEEEcCCC
Q 000744 1243 TTGIDIQHLAVNSDFIFTATKCGTIEVWL-KERVT-RVASVKANNSGGGH--AKITCLGTGVDG 1302 (1306)
Q Consensus 1243 ~~~~~V~sla~spd~Lasgs~Dg~I~IWd-~~tg~-~l~~l~~~~~~~~~--~~V~slafSpdg 1302 (1306)
....+...+++|..-++..|....|.||. .-.+. ...... -.|. +.|.++.|.|-.
T Consensus 332 ~tp~~a~~ls~SqkglLA~~~G~~v~iw~d~~~~s~~~~~pY----m~H~~~~~V~~l~FcP~E 391 (545)
T KOG1272|consen 332 RTPHPASNLSLSQKGLLALSYGDHVQIWKDALKGSGHGETPY----MNHRCGGPVEDLRFCPYE 391 (545)
T ss_pred ecCCCccccccccccceeeecCCeeeeehhhhcCCCCCCcch----hhhccCcccccceeccHH
Confidence 66667888999988555555666899995 32222 111111 1122 578888887743
No 231
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.03 E-value=3.2e-08 Score=120.96 Aligned_cols=198 Identities=11% Similarity=0.000 Sum_probs=128.9
Q ss_pred CcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCc
Q 000744 1056 GTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSL---DKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAE 1132 (1306)
Q Consensus 1056 g~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~---DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~ 1132 (1306)
..|.+||..+. ..+.+..|...+.+..|+|||+.|+..+. +..|.+||+.+++...+..+ .+.+....
T Consensus 182 ~~l~~~d~dg~---~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~--~g~~~~~~---- 252 (435)
T PRK05137 182 KRLAIMDQDGA---NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNF--PGMTFAPR---- 252 (435)
T ss_pred eEEEEECCCCC---CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecC--CCcccCcE----
Confidence 47889998665 34556678889999999999998887764 46899999988754433322 23444444
Q ss_pred EEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCCEEEEEECCCc--EEEEECCCCceeEEecCcccccCCc-cEEEE
Q 000744 1133 IACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGDKLYCGCSGYS--IQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSL 1209 (1306)
Q Consensus 1133 ~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~Dg~--I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl 1209 (1306)
|+|||+.+ +++.+.++. |++||+.++.... +..+. .....
T Consensus 253 ---~SPDG~~l---------------------------a~~~~~~g~~~Iy~~d~~~~~~~~-------Lt~~~~~~~~~ 295 (435)
T PRK05137 253 ---FSPDGRKV---------------------------VMSLSQGGNTDIYTMDLRSGTTTR-------LTDSPAIDTSP 295 (435)
T ss_pred ---ECCCCCEE---------------------------EEEEecCCCceEEEEECCCCceEE-------ccCCCCccCce
Confidence 77777622 234444444 7888998876544 22233 45668
Q ss_pred EEeCCcEEEEEEe-cCC-CEEEEEECCCCceEEEEecCCCEEEEEEcCc--EEEEEECC---CcEEEEECCCCeEEEEEe
Q 000744 1210 HMHNGLLFAGGSS-VDG-TAGKVFSISSKTAVGSFTTGIDIQHLAVNSD--FIFTATKC---GTIEVWLKERVTRVASVK 1282 (1306)
Q Consensus 1210 ~~s~~~~llas~s-~Dg-~~I~IWD~~t~~~l~~l~~~~~V~sla~spd--~Lasgs~D---g~I~IWd~~tg~~l~~l~ 1282 (1306)
.|+|++..++..+ .++ ..|++||..++.......+...+....|+|| +|+..+.+ ..|.+||..++. ...+.
T Consensus 296 ~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt 374 (435)
T PRK05137 296 SYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILT 374 (435)
T ss_pred eEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEecc
Confidence 8997765444333 222 2688889877655433334455777889998 66555433 368889986554 34443
Q ss_pred cccCCCCCCCeEEEEEcCCCCccC
Q 000744 1283 ANNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1283 ~~~~~~~~~~V~slafSpdg~~La 1306 (1306)
. + ..+.+..|+|||++|+
T Consensus 375 ~---~---~~~~~p~~spDG~~i~ 392 (435)
T PRK05137 375 S---G---FLVEGPTWAPNGRVIM 392 (435)
T ss_pred C---C---CCCCCCeECCCCCEEE
Confidence 2 1 2467889999999874
No 232
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.02 E-value=2.1e-08 Score=122.42 Aligned_cols=198 Identities=14% Similarity=-0.013 Sum_probs=126.0
Q ss_pred CcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCceeEEEeecCCCCeEEEEeCCc
Q 000744 1056 GTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLD---KTIRVWSIKPEEIHCLQVHNVKEAVHELTANAE 1132 (1306)
Q Consensus 1056 g~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~D---gtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~ 1132 (1306)
..|.+||..+. ..+.+..|...+.+..|+|||+.|+..+.+ ..|.+||+.+++...+..+. +...+..
T Consensus 184 ~~l~i~D~~g~---~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~--g~~~~~~---- 254 (433)
T PRK04922 184 YALQVADSDGY---NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFR--GINGAPS---- 254 (433)
T ss_pred EEEEEECCCCC---CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCC--CCccCce----
Confidence 46899998754 345566677889999999999999987743 46999999887543333222 2222333
Q ss_pred EEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCCEEEEEECCC--cEEEEECCCCceeEEecCcccccCCc-cEEEE
Q 000744 1133 IACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGDKLYCGCSGY--SIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSL 1209 (1306)
Q Consensus 1133 ~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~Dg--~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl 1209 (1306)
|+|||+.+ +++.+.+| .|++||+.+++.... ..+. .....
T Consensus 255 ---~SpDG~~l---------------------------~~~~s~~g~~~Iy~~d~~~g~~~~l-------t~~~~~~~~~ 297 (433)
T PRK04922 255 ---FSPDGRRL---------------------------ALTLSRDGNPEIYVMDLGSRQLTRL-------TNHFGIDTEP 297 (433)
T ss_pred ---ECCCCCEE---------------------------EEEEeCCCCceEEEEECCCCCeEEC-------ccCCCCccce
Confidence 77777632 22334444 599999998875442 2222 34567
Q ss_pred EEeCCcEEEEEEe-cCC-CEEEEEECCCCceEEEEecCCCEEEEEEcCc--EEEEEECCC---cEEEEECCCCeEEEEEe
Q 000744 1210 HMHNGLLFAGGSS-VDG-TAGKVFSISSKTAVGSFTTGIDIQHLAVNSD--FIFTATKCG---TIEVWLKERVTRVASVK 1282 (1306)
Q Consensus 1210 ~~s~~~~llas~s-~Dg-~~I~IWD~~t~~~l~~l~~~~~V~sla~spd--~Lasgs~Dg---~I~IWd~~tg~~l~~l~ 1282 (1306)
.|+|++..++..+ .++ ..|+++|+.+++......+.......+|+|| +|+..+.++ .|.+||+.+++.. .+.
T Consensus 298 ~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt 376 (433)
T PRK04922 298 TWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT 376 (433)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC
Confidence 8997765544433 233 1477778777764332223334557899998 665544332 6999999888654 443
Q ss_pred cccCCCCCCCeEEEEEcCCCCccC
Q 000744 1283 ANNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1283 ~~~~~~~~~~V~slafSpdg~~La 1306 (1306)
. ........|+|||++|+
T Consensus 377 ~------~~~~~~p~~spdG~~i~ 394 (433)
T PRK04922 377 P------GSLDESPSFAPNGSMVL 394 (433)
T ss_pred C------CCCCCCceECCCCCEEE
Confidence 1 12345678999999764
No 233
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.02 E-value=4.9e-08 Score=118.96 Aligned_cols=231 Identities=11% Similarity=0.028 Sum_probs=136.7
Q ss_pred CcEEEEeCCCc-eEEcccCCCCEEEEEEeCC--EEEEEECC---CcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCC
Q 000744 1018 NATELWHCNEV-TELDSSTNGEVLSLIHLKG--RVLSSHSD---GTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGD 1091 (1306)
Q Consensus 1018 g~I~IWd~~~~-~~i~~~H~~~V~sl~fspd--~LaSgs~D---g~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~ 1091 (1306)
..|.+||.... ......+...+.+.+|+|| .|+..+.+ ..|.+||+.++. .. .+....+.+.+..|+|||+
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~--~~-~l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR--RR-VVANFKGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCC--EE-EeecCCCCccceEECCCCC
Confidence 46777777542 2334567788999999996 66666543 359999999883 32 2333345567899999998
Q ss_pred EEE-EEeCCCcEEEEEcC--CCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeC
Q 000744 1092 KLY-SGSLDKTIRVWSIK--PEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTG 1168 (1306)
Q Consensus 1092 ~L~-Sgs~DgtI~VWdi~--~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~ 1168 (1306)
.|+ +.+.+|...||.++ ++..+.+ ..+........ |+|||+
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~~~~l--t~~~~~~~~~~-------wSpDG~--------------------------- 296 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSGLRRL--TQSSGIDTEPF-------FSPDGR--------------------------- 296 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCCcEEC--CCCCCCCcCeE-------EcCCCC---------------------------
Confidence 876 56788887777654 3322221 11112222333 777776
Q ss_pred CEEEEEE-CCCcEEEE--ECCCCceeEEecCcccccCCccEEEEEEeCCcEEEEEEecCCC--EEEEEECCCCceEEEEe
Q 000744 1169 DKLYCGC-SGYSIQEV--DLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLLFAGGSSVDGT--AGKVFSISSKTAVGSFT 1243 (1306)
Q Consensus 1169 d~L~sgs-~Dg~I~iw--Dl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~s~Dg~--~I~IWD~~t~~~l~~l~ 1243 (1306)
+++..+ .+|...+| |+.++....... .+. ......|+|++.+++..+.+++ .|.+||+.+++.. .+.
T Consensus 297 -~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~-----~g~-~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt 368 (427)
T PRK02889 297 -SIYFTSDRGGAPQIYRMPASGGAAQRVTF-----TGS-YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALT 368 (427)
T ss_pred -EEEEEecCCCCcEEEEEECCCCceEEEec-----CCC-CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-Ecc
Confidence 343333 34555555 444554332211 111 2335678987766655444432 6999999888654 344
Q ss_pred cCCCEEEEEEcCc--EEEEEEC-CCc--EEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCC
Q 000744 1244 TGIDIQHLAVNSD--FIFTATK-CGT--IEVWLKERVTRVASVKANNSGGGHAKITCLGTGVD 1301 (1306)
Q Consensus 1244 ~~~~V~sla~spd--~Lasgs~-Dg~--I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpd 1301 (1306)
.+.......|+|| +|+.++. .|. +++.+. +|.....+.. +.+.+...+|+|-
T Consensus 369 ~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~-----~~g~~~~p~wsp~ 425 (427)
T PRK02889 369 DTTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSV-----QGGDVREPSWGPF 425 (427)
T ss_pred CCCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeec-----CCCCCCCCccCCC
Confidence 3334567899998 5555443 333 555566 4555555643 3346777888874
No 234
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.02 E-value=8.8e-08 Score=117.12 Aligned_cols=229 Identities=7% Similarity=-0.037 Sum_probs=142.9
Q ss_pred CcEEEEeCCCc-eEEcccCCCCEEEEEEeCC--EEEEEEC---CCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCC
Q 000744 1018 NATELWHCNEV-TELDSSTNGEVLSLIHLKG--RVLSSHS---DGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGD 1091 (1306)
Q Consensus 1018 g~I~IWd~~~~-~~i~~~H~~~V~sl~fspd--~LaSgs~---Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~ 1091 (1306)
..|.+||..+. ......|...+.+..|+|| .|+..+. +..|.+||+.++. . ..+..+.+.+.+..|+|||+
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~--~-~~l~~~~g~~~~~~~SPDG~ 258 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ--R-ELVGNFPGMTFAPRFSPDGR 258 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc--E-EEeecCCCcccCcEECCCCC
Confidence 47888888653 3445678889999999996 6666553 4689999999873 2 34455667788899999998
Q ss_pred EEE-EEeCCCc--EEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeC
Q 000744 1092 KLY-SGSLDKT--IRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTG 1168 (1306)
Q Consensus 1092 ~L~-Sgs~Dgt--I~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~ 1168 (1306)
.|+ +.+.+|. |.+||+.+++...+.. +........ ++|||+
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~--~~~~~~~~~-------~spDG~--------------------------- 302 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTTRLTD--SPAIDTSPS-------YSPDGS--------------------------- 302 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceEEccC--CCCccCcee-------EcCCCC---------------------------
Confidence 765 6666665 6667887764333222 222223333 777776
Q ss_pred CEEEEEE-CC--CcEEEEECCCCceeEEecCcccccCCccEEEEEEeCCcEEEEEEecCC--CEEEEEECCCCceEEEEe
Q 000744 1169 DKLYCGC-SG--YSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLLFAGGSSVDG--TAGKVFSISSKTAVGSFT 1243 (1306)
Q Consensus 1169 d~L~sgs-~D--g~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~s~Dg--~~I~IWD~~t~~~l~~l~ 1243 (1306)
+++..+ .+ ..|++||+.++........ ...+....|+|++..++..+.++ ..|.+||..++. ...+.
T Consensus 303 -~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~------~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt 374 (435)
T PRK05137 303 -QIVFESDRSGSPQLYVMNADGSNPRRISFG------GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILT 374 (435)
T ss_pred -EEEEEECCCCCCeEEEEECCCCCeEEeecC------CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEecc
Confidence 333333 22 3688889877665443211 11455678997776655543332 268888976554 34454
Q ss_pred cCCCEEEEEEcCc--EEEEEEC-C-----CcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcC
Q 000744 1244 TGIDIQHLAVNSD--FIFTATK-C-----GTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGV 1300 (1306)
Q Consensus 1244 ~~~~V~sla~spd--~Lasgs~-D-----g~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSp 1300 (1306)
....+....|+|| +|+..+. . ..++++|+..++. ..+.. ...+..-+|+|
T Consensus 375 ~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~------~~~~~~p~Wsp 432 (435)
T PRK05137 375 SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPT------PGDASDPAWSP 432 (435)
T ss_pred CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEccC------CCCccCcccCC
Confidence 4445778899998 5444333 2 2578888876544 44442 12456677876
No 235
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.01 E-value=3.3e-09 Score=117.09 Aligned_cols=196 Identities=14% Similarity=0.121 Sum_probs=136.0
Q ss_pred eEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc----eeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEE
Q 000744 1070 LIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEE----IHCLQVHNVKEAVHELTANAEIACFVSPATGVKV 1145 (1306)
Q Consensus 1070 ~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~----~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i 1145 (1306)
+.+.+.+|.+.|.++.|+.++++|+||+.|..+++|++..-- .+++....
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~-------------------------- 101 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVME-------------------------- 101 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceecc--------------------------
Confidence 334567899999999999999999999999999999987521 11111111
Q ss_pred EEecCCEEEeccCCCeEEEEEe-CC-EEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEe
Q 000744 1146 YNWSGAIKHINFNKHVKSLVMT-GD-KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSS 1222 (1306)
Q Consensus 1146 ~~~~~~~~l~~~~~~V~sl~~s-~d-~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s 1222 (1306)
..|.+.|.|++|. ++ ++++|..+++|...|+.+.+.+.++... ... .|+.+..+|....+++.+
T Consensus 102 ---------~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~----~~~~~VY~m~~~P~DN~~~~~t 168 (609)
T KOG4227|consen 102 ---------HPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANEN----NNRGDVYHMDQHPTDNTLIVVT 168 (609)
T ss_pred ---------CccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeeccc----CcccceeecccCCCCceEEEEe
Confidence 0144566777776 22 6899999999999999999988876421 112 889999987665555655
Q ss_pred cCCCEEEEEECCCCc-eEEEE---ecCCCEEEEEEcCc---EEEEEECCCcEEEEECCCCe-EEEEEecccCCCC-CCCe
Q 000744 1223 VDGTAGKVFSISSKT-AVGSF---TTGIDIQHLAVNSD---FIFTATKCGTIEVWLKERVT-RVASVKANNSGGG-HAKI 1293 (1306)
Q Consensus 1223 ~Dg~~I~IWD~~t~~-~l~~l---~~~~~V~sla~spd---~Lasgs~Dg~I~IWd~~tg~-~l~~l~~~~~~~~-~~~V 1293 (1306)
.++ .|.+||.+..+ ...-+ .......++.|+|. +|++.+..+-+.+||.+... .+....+...... ...-
T Consensus 169 ~~~-~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~ 247 (609)
T KOG4227|consen 169 RAK-LVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEW 247 (609)
T ss_pred cCc-eEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhh
Confidence 566 89999998755 22222 23556899999997 99999999999999998643 1211111000001 1223
Q ss_pred EEEEEcCCCCcc
Q 000744 1294 TCLGTGVDGHPY 1305 (1306)
Q Consensus 1294 ~slafSpdg~~L 1305 (1306)
.++.|+|+|..+
T Consensus 248 M~~~~~~~G~Q~ 259 (609)
T KOG4227|consen 248 MGSLWSPSGNQF 259 (609)
T ss_pred hheeeCCCCCee
Confidence 578899999765
No 236
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.99 E-value=3.9e-10 Score=130.92 Aligned_cols=73 Identities=22% Similarity=0.447 Sum_probs=65.5
Q ss_pred CCCCcccCcccccccCCcEEcCCCCcccHHHHHHHHHcCCCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHCCC
Q 000744 339 RPPKDFVCPITGQIFNDPVTLETGQTYERKAIQEWLKRGNTTCPITRQPLCSNSLPKTNYVLKRLITSWKEQYPD 413 (1306)
Q Consensus 339 ~~~~~~~CpIc~~l~~dPv~~~cGhtfc~~cI~~~~~~~~~~CP~c~~~l~~~~l~~~N~~L~~li~~~~~~~~~ 413 (1306)
.+...+.||||.++|.+||+++|||+||..||..|+.. ...||.|+..+....+. +|+.|.++++.|+...+.
T Consensus 22 ~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr-~N~~L~~iVe~~~~~R~~ 94 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLR-SNWLVSEIVESFKNLRPS 94 (397)
T ss_pred ccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCc-cchHHHHHHHHHHHhhHH
Confidence 45689999999999999999999999999999999986 45799999999887785 999999999999886653
No 237
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.98 E-value=1e-08 Score=113.06 Aligned_cols=188 Identities=14% Similarity=0.160 Sum_probs=132.0
Q ss_pred CEEEEEEeCC--EEEEEECCCcEEEEeCCCCccceEEEEc-ccCccEEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCcee
Q 000744 1038 EVLSLIHLKG--RVLSSHSDGTIKMWDSGKRVLRLIQEVR-EHTRAVTCLYVPSS-GDKLYSGSLDKTIRVWSIKPEEIH 1113 (1306)
Q Consensus 1038 ~V~sl~fspd--~LaSgs~Dg~I~vWd~~t~~~~~i~~l~-~H~~~V~sl~fspd-g~~L~Sgs~DgtI~VWdi~~~~~~ 1113 (1306)
.+..++|++. .++++..|-+|++||-+.. +...++ .....|+|++|-|. +.-|+.|... -|.+|......
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~ksst---~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tl-- 173 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSST---CPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTL-- 173 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCCC---CCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccc--
Confidence 4667788874 7889999999999998774 333333 23457999999995 4566666664 48899876520
Q ss_pred EEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCCEEEEEECCCcEEEEECCCCceeEE
Q 000744 1114 CLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGDKLYCGCSGYSIQEVDLGNLTSTTF 1193 (1306)
Q Consensus 1114 ~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~ 1193 (1306)
. ...+ ..+...+. ++.
T Consensus 174 -----n-~~r~-----------------------------------------------~~~~s~~~--------~qv--- 189 (445)
T KOG2139|consen 174 -----N-ANRN-----------------------------------------------IRMMSTHH--------LQV--- 189 (445)
T ss_pred -----c-cccc-----------------------------------------------cccccccc--------hhh---
Confidence 0 0000 00001111 111
Q ss_pred ecCcccccCCccEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEE-ecCCCEEEEEEcCc--EEEEEECCCcEEEE
Q 000744 1194 YAGTKKLLGKQTIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSF-TTGIDIQHLAVNSD--FIFTATKCGTIEVW 1270 (1306)
Q Consensus 1194 ~~~~~~l~gh~~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l-~~~~~V~sla~spd--~Lasgs~Dg~I~IW 1270 (1306)
+. -.||.+|+++.|++++..+++++.++..|.|||..+++.+.-. .+.+.++-+.|+|| ++++++-|+..++|
T Consensus 190 l~----~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw 265 (445)
T KOG2139|consen 190 LQ----DPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLW 265 (445)
T ss_pred ee----CCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeee
Confidence 11 2255699999999888888888888889999999999877666 46677999999999 99999999999999
Q ss_pred ECC-CCeEEEEEecccCCCCCCCeEEEEEcCCCCcc
Q 000744 1271 LKE-RVTRVASVKANNSGGGHAKITCLGTGVDGHPY 1305 (1306)
Q Consensus 1271 d~~-tg~~l~~l~~~~~~~~~~~V~slafSpdg~~L 1305 (1306)
+.. +..+.+-.. ..+.|+.-+|+|+|++|
T Consensus 266 ~e~q~wt~erw~l------gsgrvqtacWspcGsfL 295 (445)
T KOG2139|consen 266 QENQSWTKERWIL------GSGRVQTACWSPCGSFL 295 (445)
T ss_pred hhcccceecceec------cCCceeeeeecCCCCEE
Confidence 543 333333333 33489999999999976
No 238
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.98 E-value=3.7e-08 Score=107.56 Aligned_cols=203 Identities=14% Similarity=0.126 Sum_probs=148.5
Q ss_pred cEEEEEeCCCcEEEEeCCC-----ceEEcccCCCCEEEEEEeC--CEEEEEECCCcEEEEeC-CCCccceEEEEcccCcc
Q 000744 1009 KALMNLSSVNATELWHCNE-----VTELDSSTNGEVLSLIHLK--GRVLSSHSDGTIKMWDS-GKRVLRLIQEVREHTRA 1080 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~-----~~~i~~~H~~~V~sl~fsp--d~LaSgs~Dg~I~vWd~-~t~~~~~i~~l~~H~~~ 1080 (1306)
..+|.+.....|.||.... ..++...|...|+.|+|+| +.|++|+.|..-+||.. .++.+++.-.+..|+..
T Consensus 23 t~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrA 102 (361)
T KOG1523|consen 23 TQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRA 102 (361)
T ss_pred ceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccc
Confidence 6788888889999998764 3466778999999999998 49999999999999999 77778888889999999
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc-eeEE--EeecCCCCeEEEEe--CCc-EEEEEcCCCeEEEEEe-----c
Q 000744 1081 VTCLYVPSSGDKLYSGSLDKTIRVWSIKPEE-IHCL--QVHNVKEAVHELTA--NAE-IACFVSPATGVKVYNW-----S 1149 (1306)
Q Consensus 1081 V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~-~~~i--~~~~~~~~V~sl~~--~~~-~v~~s~dg~~I~i~~~-----~ 1149 (1306)
+++|.|+|.++.|++||.-+.|.||-++..+ .-.- ....+...|.+++| ++- ++..+.|++ .++++. +
T Consensus 103 At~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k-~rVfSayIK~Vd 181 (361)
T KOG1523|consen 103 ATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGK-CRVFSAYIKGVD 181 (361)
T ss_pred eeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcc-eeEEEEeeeccc
Confidence 9999999999999999999999999998765 2111 22235688999998 222 233344554 444331 1
Q ss_pred --CCEEEe--------------ccCCCeEEEEEe--CCEEEEEECCCcEEEEECCCCc-eeEEecCcccccCCc-cEEEE
Q 000744 1150 --GAIKHI--------------NFNKHVKSLVMT--GDKLYCGCSGYSIQEVDLGNLT-STTFYAGTKKLLGKQ-TIHSL 1209 (1306)
Q Consensus 1150 --~~~~l~--------------~~~~~V~sl~~s--~d~L~sgs~Dg~I~iwDl~~~~-~~~~~~~~~~l~gh~-~I~sl 1209 (1306)
.....| ...++|..+.|+ ++.|+-.+.|.++.+-|..... .+.. ....+ |..++
T Consensus 182 ekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~------~~~~~lP~ls~ 255 (361)
T KOG1523|consen 182 EKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQS------VATAQLPLLSV 255 (361)
T ss_pred cCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccc------hhhccCCceee
Confidence 111112 236789999999 5579999999999999987654 2221 11122 66777
Q ss_pred EEeCCcEEE
Q 000744 1210 HMHNGLLFA 1218 (1306)
Q Consensus 1210 ~~s~~~~ll 1218 (1306)
.|-.+..++
T Consensus 256 ~~ise~~vv 264 (361)
T KOG1523|consen 256 SWISENSVV 264 (361)
T ss_pred EeecCCcee
Confidence 775443333
No 239
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.98 E-value=4.3e-08 Score=113.78 Aligned_cols=256 Identities=9% Similarity=0.077 Sum_probs=172.1
Q ss_pred ccCCCCEEEEEEeCC---EEEEEECCCcEEEEeCCCCccceEEEEcccC--ccEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 000744 1033 SSTNGEVLSLIHLKG---RVLSSHSDGTIKMWDSGKRVLRLIQEVREHT--RAVTCLYVPSSGDKLYSGSLDKTIRVWSI 1107 (1306)
Q Consensus 1033 ~~H~~~V~sl~fspd---~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~--~~V~sl~fspdg~~L~Sgs~DgtI~VWdi 1107 (1306)
..|....+.|..+|| .++||.+--.|++||+..- -..|..|. ..|.-.-++.|-..++--..|.+|-+..-
T Consensus 48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanL----SLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak 123 (703)
T KOG2321|consen 48 FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANL----SLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK 123 (703)
T ss_pred cCCccccceeEecCCCcEEEEecccCCceEEEEcccc----eeeeeecccccceeEEEeccchhhheEeecCceeeehhh
Confidence 456777888999997 7889999999999999865 23444453 34555555666666666677888766543
Q ss_pred CCCceeEEEeecCCCCeEEEEe---CCcEEEEEcCCCeEEEEEecCCEEEec---cCCCeEEEEEeCC--EEEEEECCCc
Q 000744 1108 KPEEIHCLQVHNVKEAVHELTA---NAEIACFVSPATGVKVYNWSGAIKHIN---FNKHVKSLVMTGD--KLYCGCSGYS 1179 (1306)
Q Consensus 1108 ~~~~~~~i~~~~~~~~V~sl~~---~~~~v~~s~dg~~I~i~~~~~~~~l~~---~~~~V~sl~~s~d--~L~sgs~Dg~ 1179 (1306)
-.. ...++. +..-.++++ +..+. +...|..|.-.+++....+.. ..+.++++..++- .|++|+.||.
T Consensus 124 ~G~-hy~~RI---P~~GRDm~y~~~scDly-~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~ 198 (703)
T KOG2321|consen 124 YGR-HYRTRI---PKFGRDMKYHKPSCDLY-LVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGV 198 (703)
T ss_pred cCe-eeeeec---CcCCccccccCCCccEE-EeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCce
Confidence 221 111111 112223332 22333 333344455445543332222 3477888888854 6888888999
Q ss_pred EEEEECCCCceeEEecCcccccCCc------cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEec--CCCEEEE
Q 000744 1180 IQEVDLGNLTSTTFYAGTKKLLGKQ------TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFTT--GIDIQHL 1251 (1306)
Q Consensus 1180 I~iwDl~~~~~~~~~~~~~~l~gh~------~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~--~~~V~sl 1251 (1306)
|..||.++...+.++.....+..|. .|+++.|+++++-++.|..+| .+.|||+++.+++..-.| ..+|..+
T Consensus 199 VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G-~v~iyDLRa~~pl~~kdh~~e~pi~~l 277 (703)
T KOG2321|consen 199 VEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTG-SVLIYDLRASKPLLVKDHGYELPIKKL 277 (703)
T ss_pred EEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCC-cEEEEEcccCCceeecccCCccceeee
Confidence 9999999987766655433322222 699999999888888887788 899999999988777665 4569999
Q ss_pred EEcCc----EEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCCCcc
Q 000744 1252 AVNSD----FIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDGHPY 1305 (1306)
Q Consensus 1252 a~spd----~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~~L 1305 (1306)
.|.+. .++|. +...++|||-.+|+....+. ....++.+++-|++-++
T Consensus 278 ~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiE------pt~~lND~C~~p~sGm~ 328 (703)
T KOG2321|consen 278 DWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIE------PTSDLNDFCFVPGSGMF 328 (703)
T ss_pred cccccCCCceEEec-chHHhhhcccccCCceeecc------ccCCcCceeeecCCceE
Confidence 99654 55554 45689999999999988887 33468899998887653
No 240
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.98 E-value=2.3e-09 Score=123.03 Aligned_cols=164 Identities=16% Similarity=0.169 Sum_probs=114.2
Q ss_pred EEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecC
Q 000744 1071 IQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSG 1150 (1306)
Q Consensus 1071 i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~ 1150 (1306)
-..+.||++.|+|+.|+.+|.+|+|||+|-.+.|||.-..+.......+
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~Tg------------------------------- 91 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTG------------------------------- 91 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecc-------------------------------
Confidence 3467899999999999999999999999999999998765322221222
Q ss_pred CEEEeccCCCeEEEEEeCC----EEEEEECCCcEEEEECCCCceeE----EecCcccccCCc-cEEEEEEeCCc-EEEEE
Q 000744 1151 AIKHINFNKHVKSLVMTGD----KLYCGCSGYSIQEVDLGNLTSTT----FYAGTKKLLGKQ-TIHSLHMHNGL-LFAGG 1220 (1306)
Q Consensus 1151 ~~~l~~~~~~V~sl~~s~d----~L~sgs~Dg~I~iwDl~~~~~~~----~~~~~~~l~gh~-~I~sl~~s~~~-~llas 1220 (1306)
|...|.|+.|-|. .+++|..|..|++||+...+.-. ......-+..|. .|..++..|++ ..+-+
T Consensus 92 ------HtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtfws 165 (758)
T KOG1310|consen 92 ------HTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWS 165 (758)
T ss_pred ------cccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEE
Confidence 4455555555532 58999999999999998522110 000111233555 78888887665 44445
Q ss_pred EecCCCEEEEEECCCCce-------EEEEe----cCCCEEEEEEcCc---EEEEEECCCcEEEEEC
Q 000744 1221 SSVDGTAGKVFSISSKTA-------VGSFT----TGIDIQHLAVNSD---FIFTATKCGTIEVWLK 1272 (1306)
Q Consensus 1221 ~s~Dg~~I~IWD~~t~~~-------l~~l~----~~~~V~sla~spd---~Lasgs~Dg~I~IWd~ 1272 (1306)
++.|| +|+-+|++.... ...+. .-....++.++|. +|+.|+.|-..++||.
T Consensus 166 asEDG-tirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 166 ASEDG-TIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred ecCCc-ceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 66788 999999986321 11111 1123678899986 9999999999999994
No 241
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.93 E-value=3.9e-08 Score=107.91 Aligned_cols=240 Identities=10% Similarity=0.192 Sum_probs=162.6
Q ss_pred cCCCCEEEEEEeC--CEEEEEECCCcEEEEeCCC---CccceEEEEcccC------------ccEEEEEEcCCC--CEEE
Q 000744 1034 STNGEVLSLIHLK--GRVLSSHSDGTIKMWDSGK---RVLRLIQEVREHT------------RAVTCLYVPSSG--DKLY 1094 (1306)
Q Consensus 1034 ~H~~~V~sl~fsp--d~LaSgs~Dg~I~vWd~~t---~~~~~i~~l~~H~------------~~V~sl~fspdg--~~L~ 1094 (1306)
....-|.+|.|.- ++|+||..+|.|.++.-.. +.......++.|. ..|..+.|.+++ ..++
T Consensus 23 teadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 23 TEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred chhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 3345688888875 5999999999999997543 2223445566664 368899999865 4677
Q ss_pred EEeCCCcEEEEEcCCCcee---------------------------------EEEee--cCCCCeEEEEe-CCcEEEEEc
Q 000744 1095 SGSLDKTIRVWSIKPEEIH---------------------------------CLQVH--NVKEAVHELTA-NAEIACFVS 1138 (1306)
Q Consensus 1095 Sgs~DgtI~VWdi~~~~~~---------------------------------~i~~~--~~~~~V~sl~~-~~~~v~~s~ 1138 (1306)
..+.|++|++|.+.....+ |.+.+ .|...|.+|.+ ++.-...+.
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA 182 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA 182 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec
Confidence 7788999999998653211 11111 25556777777 455566777
Q ss_pred CCCeEEEEEec---CCEEEec--------cCCCeEEEEEeCC---EEEEEECCCcEEEEECCCCcee----EEecCc---
Q 000744 1139 PATGVKVYNWS---GAIKHIN--------FNKHVKSLVMTGD---KLYCGCSGYSIQEVDLGNLTST----TFYAGT--- 1197 (1306)
Q Consensus 1139 dg~~I~i~~~~---~~~~l~~--------~~~~V~sl~~s~d---~L~sgs~Dg~I~iwDl~~~~~~----~~~~~~--- 1197 (1306)
|.-.|.+|... +...+.+ ...-|++..|+|. .++-.+..|+|++-|++..... +.|..+
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 77778888876 2233332 1345788889975 5777888999999999953211 111111
Q ss_pred --cccc-CCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECC-CCceEEEEecCC-------------C---EEEEEEcCc
Q 000744 1198 --KKLL-GKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSIS-SKTAVGSFTTGI-------------D---IQHLAVNSD 1256 (1306)
Q Consensus 1198 --~~l~-gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~-t~~~l~~l~~~~-------------~---V~sla~spd 1256 (1306)
+.+. +-- .|..+.|+++|.|+.+- |-.+|++||++ ..+++.+++-|. . -..++|+++
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsR--Dyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~ 340 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSR--DYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN 340 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEe--ccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCC
Confidence 1110 111 68889999999999886 65589999994 456666665221 1 356789988
Q ss_pred --EEEEEECCCcEEEEECCCC
Q 000744 1257 --FIFTATKCGTIEVWLKERV 1275 (1306)
Q Consensus 1257 --~Lasgs~Dg~I~IWd~~tg 1275 (1306)
+++|||..+..++++...|
T Consensus 341 ~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 341 DSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred cceEecccccceEEEecCCCC
Confidence 9999999999999996544
No 242
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.93 E-value=6.2e-07 Score=107.64 Aligned_cols=258 Identities=10% Similarity=0.001 Sum_probs=161.1
Q ss_pred cEEEEEeCCCcEEEEeCCCceEEcccC--CCCEEEEEEeCCEEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEE
Q 000744 1009 KALMNLSSVNATELWHCNEVTELDSST--NGEVLSLIHLKGRVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYV 1086 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~~~i~~~H--~~~V~sl~fspd~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~f 1086 (1306)
+.++.++.+|.|.-+|..+...+.... ...........+.++.++.||.+..||..+| +.+...... +.+.+.-.
T Consensus 66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG--~~~W~~~~~-~~~~~~p~ 142 (377)
T TIGR03300 66 GKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDG--KELWRAKLS-SEVLSPPL 142 (377)
T ss_pred CEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCC--cEeeeeccC-ceeecCCE
Confidence 678888899999999987655443211 1112234445678999999999999999998 666554322 22221111
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeE------E-EEeCCcEEEEEcCCCeEEEEEecCCEEEeccCC
Q 000744 1087 PSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVH------E-LTANAEIACFVSPATGVKVYNWSGAIKHINFNK 1159 (1306)
Q Consensus 1087 spdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~------s-l~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~ 1159 (1306)
. .+..++.++.||.+..||.++++..- .+....+.. + +..++ .+.+...+..+..++......+|...-
T Consensus 143 v-~~~~v~v~~~~g~l~a~d~~tG~~~W--~~~~~~~~~~~~~~~sp~~~~~-~v~~~~~~g~v~ald~~tG~~~W~~~~ 218 (377)
T TIGR03300 143 V-ANGLVVVRTNDGRLTALDAATGERLW--TYSRVTPALTLRGSASPVIADG-GVLVGFAGGKLVALDLQTGQPLWEQRV 218 (377)
T ss_pred E-ECCEEEEECCCCeEEEEEcCCCceee--EEccCCCceeecCCCCCEEECC-EEEEECCCCEEEEEEccCCCEeeeecc
Confidence 1 35577888889999999999885221 111111110 1 11133 333333333466666543334443210
Q ss_pred --------------CeEEEEEeCCEEEEEECCCcEEEEECCCCceeEEecCcccccCCccEEEEEEeCCcEEEEEEecCC
Q 000744 1160 --------------HVKSLVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLLFAGGSSVDG 1225 (1306)
Q Consensus 1160 --------------~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~s~Dg 1225 (1306)
...+..+.++.+++++.+|.++.||..+|+.+..... . ........++..|+.+ .|+
T Consensus 219 ~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~----~---~~~~p~~~~~~vyv~~--~~G 289 (377)
T TIGR03300 219 ALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA----S---SYQGPAVDDNRLYVTD--ADG 289 (377)
T ss_pred ccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc----C---CccCceEeCCEEEEEC--CCC
Confidence 0112334567899999999999999999987764431 1 1122334455555543 366
Q ss_pred CEEEEEECCCCceEEEEec--CCCEEEEEEcCcEEEEEECCCcEEEEECCCCeEEEEEec
Q 000744 1226 TAGKVFSISSKTAVGSFTT--GIDIQHLAVNSDFIFTATKCGTIEVWLKERVTRVASVKA 1283 (1306)
Q Consensus 1226 ~~I~IWD~~t~~~l~~l~~--~~~V~sla~spd~Lasgs~Dg~I~IWd~~tg~~l~~l~~ 1283 (1306)
.+..+|..+++.+..... .....+.....+.+++++.||.|++||..+|+.+.+++.
T Consensus 290 -~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~ 348 (377)
T TIGR03300 290 -VVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVARLKT 348 (377)
T ss_pred -eEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence 899999999988776632 222344444556899999999999999999999988874
No 243
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.93 E-value=1.1e-07 Score=115.90 Aligned_cols=199 Identities=10% Similarity=-0.014 Sum_probs=124.1
Q ss_pred CcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCc
Q 000744 1056 GTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSL---DKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAE 1132 (1306)
Q Consensus 1056 g~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~---DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~ 1132 (1306)
..|.+||.+.. . .+.+..+...+.+..|+|||+.|+..+. +..|.+||+.+++.+.+..+. +.+....
T Consensus 179 ~~l~~~d~dg~--~-~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~--~~~~~~~---- 249 (429)
T PRK03629 179 YELRVSDYDGY--N-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP--RHNGAPA---- 249 (429)
T ss_pred eeEEEEcCCCC--C-CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC--CCcCCeE----
Confidence 36899998865 2 2334456778999999999998886543 457899999887544433332 2233333
Q ss_pred EEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCCEEEEEECCC--cEEEEECCCCceeEEecCcccccCCccEEEEE
Q 000744 1133 IACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGDKLYCGCSGY--SIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLH 1210 (1306)
Q Consensus 1133 ~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~Dg--~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~ 1210 (1306)
|+|||+.+. ++.+.+| .|++||+.+++...... ++..+....
T Consensus 250 ---~SPDG~~La---------------------------~~~~~~g~~~I~~~d~~tg~~~~lt~------~~~~~~~~~ 293 (429)
T PRK03629 250 ---FSPDGSKLA---------------------------FALSKTGSLNLYVMDLASGQIRQVTD------GRSNNTEPT 293 (429)
T ss_pred ---ECCCCCEEE---------------------------EEEcCCCCcEEEEEECCCCCEEEccC------CCCCcCceE
Confidence 788887332 2223343 58999999887654322 111567789
Q ss_pred EeCCcEEEEEEecCCC--EEEEEECCCCceEEEEecCCCEEEEEEcCc--EEEEEECC---CcEEEEECCCCeEEEEEec
Q 000744 1211 MHNGLLFAGGSSVDGT--AGKVFSISSKTAVGSFTTGIDIQHLAVNSD--FIFTATKC---GTIEVWLKERVTRVASVKA 1283 (1306)
Q Consensus 1211 ~s~~~~llas~s~Dg~--~I~IWD~~t~~~l~~l~~~~~V~sla~spd--~Lasgs~D---g~I~IWd~~tg~~l~~l~~ 1283 (1306)
|+|++..++..+.+++ .|+++|+.++................|+|| +|+..+.+ ..|.+||+.+++. ..+..
T Consensus 294 wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt~ 372 (429)
T PRK03629 294 WFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLTD 372 (429)
T ss_pred ECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEeCC
Confidence 9987765544433322 455557776654332223344667889998 66554433 3588899988864 34442
Q ss_pred ccCCCCCCCeEEEEEcCCCCccC
Q 000744 1284 NNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1284 ~~~~~~~~~V~slafSpdg~~La 1306 (1306)
. . ...+..|+|||++|+
T Consensus 373 ---~-~--~~~~p~~SpDG~~i~ 389 (429)
T PRK03629 373 ---T-F--LDETPSIAPNGTMVI 389 (429)
T ss_pred ---C-C--CCCCceECCCCCEEE
Confidence 1 1 234678999999874
No 244
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.92 E-value=2.6e-08 Score=123.21 Aligned_cols=180 Identities=16% Similarity=0.227 Sum_probs=137.1
Q ss_pred cEEEEEeCCCcEEEEeCCCceEEc-ccCCCCEE--E-E--EEeCC--EEEEEECCCcEEEEeCCCCccceEEEEcccCcc
Q 000744 1009 KALMNLSSVNATELWHCNEVTELD-SSTNGEVL--S-L--IHLKG--RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRA 1080 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~~~i~-~~H~~~V~--s-l--~fspd--~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~ 1080 (1306)
+.++.+..++.+-+||........ ..+...++ + + .++++ ++++|+.-|.|.+|+....+ .++ .+.+|.+.
T Consensus 100 k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn-~p~-~l~GHeG~ 177 (967)
T KOG0974|consen 100 KKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN-KPI-RLKGHEGS 177 (967)
T ss_pred ceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC-Ccc-eecccCCc
Confidence 678888999999999987643332 23333222 1 1 22344 99999999999999997431 333 67899999
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCC
Q 000744 1081 VTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKH 1160 (1306)
Q Consensus 1081 V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~ 1160 (1306)
|..+.|+.||.+++|.|+|+++|+|++.+.+.-.. ..++|+..
T Consensus 178 iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~-------------------------------------~~fgHsaR 220 (967)
T KOG0974|consen 178 IFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGC-------------------------------------TGFGHSAR 220 (967)
T ss_pred eEEEEEccCCcEEEEEecCcceeeeecccccccCc-------------------------------------ccccccce
Confidence 99999999999999999999999999998631111 12347777
Q ss_pred eEEEEEeCCEEEEEECCCcEEEEECCCCceeEEecCcccccCCc--cEEEEEEeCCcEEEEEEecCCCEEEEEECCC
Q 000744 1161 VKSLVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ--TIHSLHMHNGLLFAGGSSVDGTAGKVFSISS 1235 (1306)
Q Consensus 1161 V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~--~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t 1235 (1306)
|..+.|.++.+++++.|.+.++|+... .....|. +|. .|+.+..+++..+..+++.|+ .+++||...
T Consensus 221 vw~~~~~~n~i~t~gedctcrvW~~~~-~~l~~y~------~h~g~~iw~~~~~~~~~~~vT~g~Ds-~lk~~~l~~ 289 (967)
T KOG0974|consen 221 VWACCFLPNRIITVGEDCTCRVWGVNG-TQLEVYD------EHSGKGIWKIAVPIGVIIKVTGGNDS-TLKLWDLNG 289 (967)
T ss_pred eEEEEeccceeEEeccceEEEEEeccc-ceehhhh------hhhhcceeEEEEcCCceEEEeeccCc-chhhhhhhc
Confidence 788888888999999999999996554 3333443 555 799999999999998988888 799999854
No 245
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.91 E-value=7.5e-10 Score=114.74 Aligned_cols=59 Identities=24% Similarity=0.469 Sum_probs=50.5
Q ss_pred CCCCcccCcccccccCCcEEcCCCCcccHHHHHHHHHc---------------CCCCCCCCCCccCCCCCCCccH
Q 000744 339 RPPKDFVCPITGQIFNDPVTLETGQTYERKAIQEWLKR---------------GNTTCPITRQPLCSNSLPKTNY 398 (1306)
Q Consensus 339 ~~~~~~~CpIc~~l~~dPv~~~cGhtfc~~cI~~~~~~---------------~~~~CP~c~~~l~~~~l~~~N~ 398 (1306)
...++|.||||++.++|||++.|||.||+.||.+|+.. +...||.|+..+....++ |.+
T Consensus 14 ~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~Lv-Piy 87 (193)
T PLN03208 14 DSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLV-PIY 87 (193)
T ss_pred cCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEE-Eee
Confidence 34478999999999999999999999999999999852 235799999999888875 665
No 246
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.89 E-value=4e-08 Score=113.30 Aligned_cols=137 Identities=12% Similarity=0.129 Sum_probs=108.0
Q ss_pred CCCeEEEEEeCC---EEEEEECCCcEEEEECCC--------------CceeEEecC--cc------cccCCc-cEEEEEE
Q 000744 1158 NKHVKSLVMTGD---KLYCGCSGYSIQEVDLGN--------------LTSTTFYAG--TK------KLLGKQ-TIHSLHM 1211 (1306)
Q Consensus 1158 ~~~V~sl~~s~d---~L~sgs~Dg~I~iwDl~~--------------~~~~~~~~~--~~------~l~gh~-~I~sl~~ 1211 (1306)
+..|+|+.|-++ .++....+|.+++||... +....+... +. .+.-.. .|+..+|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 478999999854 688888999999997532 111111100 00 011112 7888899
Q ss_pred eCCcEEEEEEecCCCEEEEEECCCCceEEEEec-CCCEEEEEEcCc--EEEEEECCCcEEEEECCCCeEEEEEecccCCC
Q 000744 1212 HNGLLFAGGSSVDGTAGKVFSISSKTAVGSFTT-GIDIQHLAVNSD--FIFTATKCGTIEVWLKERVTRVASVKANNSGG 1288 (1306)
Q Consensus 1212 s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~-~~~V~sla~spd--~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~ 1288 (1306)
++++.++++-+.|| .+||||..+.+++..++. -+...|++|+|| ||++|++|.-|.||.+..++.+..-++
T Consensus 299 S~DG~~LA~VSqDG-fLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqG----- 372 (636)
T KOG2394|consen 299 SPDGKYLATVSQDG-FLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQG----- 372 (636)
T ss_pred cCCCceEEEEecCc-eEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccc-----
Confidence 99999999999999 999999999888877763 567999999999 999999999999999999999988876
Q ss_pred CCCCeEEEEEcC
Q 000744 1289 GHAKITCLGTGV 1300 (1306)
Q Consensus 1289 ~~~~V~slafSp 1300 (1306)
|..+|..|+|+|
T Consensus 373 HkSWVs~VaFDp 384 (636)
T KOG2394|consen 373 HKSWVSVVAFDP 384 (636)
T ss_pred cccceeeEeecc
Confidence 889999999996
No 247
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.89 E-value=1.2e-07 Score=115.54 Aligned_cols=197 Identities=11% Similarity=0.004 Sum_probs=119.2
Q ss_pred CcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCceeEEEeecCCCCeEEEEeCCc
Q 000744 1056 GTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLD---KTIRVWSIKPEEIHCLQVHNVKEAVHELTANAE 1132 (1306)
Q Consensus 1056 g~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~D---gtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~ 1132 (1306)
..|.+||..+. ....+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++...+.... +.+....
T Consensus 176 ~~L~~~D~dG~---~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~--g~~~~~~---- 246 (427)
T PRK02889 176 YQLQISDADGQ---NAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFK--GSNSAPA---- 246 (427)
T ss_pred cEEEEECCCCC---CceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCC--CCccceE----
Confidence 46777777543 344555778889999999999999877753 35999999987543332222 3333343
Q ss_pred EEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCCEE-EEEECCCcEEEE--ECCCCceeEEecCcccccCCc-cEEE
Q 000744 1133 IACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGDKL-YCGCSGYSIQEV--DLGNLTSTTFYAGTKKLLGKQ-TIHS 1208 (1306)
Q Consensus 1133 ~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~L-~sgs~Dg~I~iw--Dl~~~~~~~~~~~~~~l~gh~-~I~s 1208 (1306)
|+|||+ .+ ++.+.+|...+| |+.++.... +..+. ....
T Consensus 247 ---~SPDG~----------------------------~la~~~~~~g~~~Iy~~d~~~~~~~~-------lt~~~~~~~~ 288 (427)
T PRK02889 247 ---WSPDGR----------------------------TLAVALSRDGNSQIYTVNADGSGLRR-------LTQSSGIDTE 288 (427)
T ss_pred ---ECCCCC----------------------------EEEEEEccCCCceEEEEECCCCCcEE-------CCCCCCCCcC
Confidence 777776 33 345567765555 555554322 22222 4456
Q ss_pred EEEeCCcEEEEEEecCCCEEEEEE--CCCCceEEEEecCCCEEEEEEcCc--EEEEEECCC---cEEEEECCCCeEEEEE
Q 000744 1209 LHMHNGLLFAGGSSVDGTAGKVFS--ISSKTAVGSFTTGIDIQHLAVNSD--FIFTATKCG---TIEVWLKERVTRVASV 1281 (1306)
Q Consensus 1209 l~~s~~~~llas~s~Dg~~I~IWD--~~t~~~l~~l~~~~~V~sla~spd--~Lasgs~Dg---~I~IWd~~tg~~l~~l 1281 (1306)
..|+|++..++..+..++...+|. ..++...............+|+|| +|+..+.++ .|.+||+.+++.. .+
T Consensus 289 ~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~l 367 (427)
T PRK02889 289 PFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-AL 367 (427)
T ss_pred eEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-Ec
Confidence 789977654443332222455554 445543222222233456789998 666655544 6999999988643 34
Q ss_pred ecccCCCCCCCeEEEEEcCCCCccC
Q 000744 1282 KANNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1282 ~~~~~~~~~~~V~slafSpdg~~La 1306 (1306)
.. + .......|+|||++|+
T Consensus 368 t~---~---~~~~~p~~spdg~~l~ 386 (427)
T PRK02889 368 TD---T---TRDESPSFAPNGRYIL 386 (427)
T ss_pred cC---C---CCccCceECCCCCEEE
Confidence 32 1 2346789999999874
No 248
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.88 E-value=2.9e-08 Score=114.46 Aligned_cols=161 Identities=11% Similarity=0.110 Sum_probs=112.3
Q ss_pred EEEEeCCCcEEEEeCCC--ceE----EcccCCCCEEEEEEeCC---EEEEEECCCcEEEEeCCCCc--------------
Q 000744 1011 LMNLSSVNATELWHCNE--VTE----LDSSTNGEVLSLIHLKG---RVLSSHSDGTIKMWDSGKRV-------------- 1067 (1306)
Q Consensus 1011 Lasgs~Dg~I~IWd~~~--~~~----i~~~H~~~V~sl~fspd---~LaSgs~Dg~I~vWd~~t~~-------------- 1067 (1306)
|..|=.-|.|.+.|... ... -....+..|+|+.|-|. .++.+-.+|.+.++|..-..
T Consensus 188 llIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~ 267 (636)
T KOG2394|consen 188 LLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGD 267 (636)
T ss_pred eEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCC
Confidence 33444457777777543 111 11123578999999873 88888899999999763110
Q ss_pred -c-----------ceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEE
Q 000744 1068 -L-----------RLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIAC 1135 (1306)
Q Consensus 1068 -~-----------~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~ 1135 (1306)
+ .++..+.--.+.|..++|+|||++|++.|.||.+||+|+.+.++..+..- .-+...|++
T Consensus 268 ~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkS-YFGGLLCvc------- 339 (636)
T KOG2394|consen 268 QFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKS-YFGGLLCVC------- 339 (636)
T ss_pred eeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHh-hccceEEEE-------
Confidence 0 11111222245788999999999999999999999999998653322111 114455555
Q ss_pred EEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCCEEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeC
Q 000744 1136 FVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHN 1213 (1306)
Q Consensus 1136 ~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~ 1213 (1306)
|+|||+ +|++|+.|.-|.||.+..++.+.. -.||. +|..|+|+|
T Consensus 340 WSPDGK----------------------------yIvtGGEDDLVtVwSf~erRVVAR------GqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 340 WSPDGK----------------------------YIVTGGEDDLVTVWSFEERRVVAR------GQGHKSWVSVVAFDP 384 (636)
T ss_pred EcCCcc----------------------------EEEecCCcceEEEEEeccceEEEe------ccccccceeeEeecc
Confidence 777777 899999999999999999988873 34777 999999987
No 249
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.87 E-value=1.3e-07 Score=102.28 Aligned_cols=114 Identities=11% Similarity=0.148 Sum_probs=83.7
Q ss_pred CCeEEEEEeCC--E--EEEEECCCcEEEEECCCCceeEEecCcccccCCccEEEEEEeCCcEEEEEEecCC--CEEEEEE
Q 000744 1159 KHVKSLVMTGD--K--LYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLLFAGGSSVDG--TAGKVFS 1232 (1306)
Q Consensus 1159 ~~V~sl~~s~d--~--L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~s~Dg--~~I~IWD 1232 (1306)
++|.+++|+|+ . ++.|..++.|.+||++ ++.+..+. ...++.+.|+|++.+++.++.++ +.|.+||
T Consensus 60 ~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~-------~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd 131 (194)
T PF08662_consen 60 GPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG-------TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWD 131 (194)
T ss_pred CceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec-------CCCceEEEECCCCCEEEEEEccCCCcEEEEEE
Confidence 34677777754 3 3445567899999997 55554432 12678999999888877765442 3799999
Q ss_pred CCCCceEEEEecCCCEEEEEEcCc--EEEEEEC------CCcEEEEECCCCeEEEEEe
Q 000744 1233 ISSKTAVGSFTTGIDIQHLAVNSD--FIFTATK------CGTIEVWLKERVTRVASVK 1282 (1306)
Q Consensus 1233 ~~t~~~l~~l~~~~~V~sla~spd--~Lasgs~------Dg~I~IWd~~tg~~l~~l~ 1282 (1306)
.++.+.+.++.+. .++.++|+|| ++++++. |+.++||+.. |+.+....
T Consensus 132 ~~~~~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 132 VRKKKKISTFEHS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred CCCCEEeeccccC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 9999888887654 5889999999 7777663 7899999985 66666554
No 250
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.86 E-value=1e-07 Score=105.36 Aligned_cols=164 Identities=15% Similarity=0.187 Sum_probs=109.4
Q ss_pred EEEEeCCCcEEEEeCCC--ceEEcccCCCCEEEEEEeCC---EEEEEECCCcEEEEeCCCC-cc-c--------e--EEE
Q 000744 1011 LMNLSSVNATELWHCNE--VTELDSSTNGEVLSLIHLKG---RVLSSHSDGTIKMWDSGKR-VL-R--------L--IQE 1073 (1306)
Q Consensus 1011 Lasgs~Dg~I~IWd~~~--~~~i~~~H~~~V~sl~fspd---~LaSgs~Dg~I~vWd~~t~-~~-~--------~--i~~ 1073 (1306)
+|++..|-+|++||-.. ...+....+..|+|++|-|. .|+.|+..| |.+|..... .. . + +..
T Consensus 113 fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~ 191 (445)
T KOG2139|consen 113 FAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQ 191 (445)
T ss_pred hhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhhee
Confidence 78899999999999764 22333445778999999984 777777655 899987521 00 1 1 112
Q ss_pred EcccCccEEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCE
Q 000744 1074 VREHTRAVTCLYVPSSGDKLYSGSL-DKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAI 1152 (1306)
Q Consensus 1074 l~~H~~~V~sl~fspdg~~L~Sgs~-DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~ 1152 (1306)
..+| .+|+++.|++||..+++++. |..|.|||..++....+.-. ..+.+.-+. ++|||.
T Consensus 192 ~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~-glgg~slLk-------wSPdgd----------- 251 (445)
T KOG2139|consen 192 DPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK-GLGGFSLLK-------WSPDGD----------- 251 (445)
T ss_pred CCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc-CCCceeeEE-------EcCCCC-----------
Confidence 2355 68999999999999999886 57899999999853333311 123444444 677765
Q ss_pred EEeccCCCeEEEEEeCCEEEEEECCCcEEEEECCCC-ceeEEecCcccccCCccEEEEEEeCCcEEE
Q 000744 1153 KHINFNKHVKSLVMTGDKLYCGCSGYSIQEVDLGNL-TSTTFYAGTKKLLGKQTIHSLHMHNGLLFA 1218 (1306)
Q Consensus 1153 ~l~~~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~-~~~~~~~~~~~l~gh~~I~sl~~s~~~~ll 1218 (1306)
++++++-|+..++|+.... ...+- ..+...|...+|+|.+.++
T Consensus 252 -----------------~lfaAt~davfrlw~e~q~wt~erw------~lgsgrvqtacWspcGsfL 295 (445)
T KOG2139|consen 252 -----------------VLFAATCDAVFRLWQENQSWTKERW------ILGSGRVQTACWSPCGSFL 295 (445)
T ss_pred -----------------EEEEecccceeeeehhcccceecce------eccCCceeeeeecCCCCEE
Confidence 7889999999999955432 22211 1111167777787665443
No 251
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.81 E-value=1.4e-08 Score=129.99 Aligned_cols=230 Identities=14% Similarity=0.135 Sum_probs=161.8
Q ss_pred CCCcEEEEeCCCceEEcccCCCCEEEEEEeCC--EEEEEECCCcEEEEeCCCCccceEEEEc-ccCccEEEEEEcCCCCE
Q 000744 1016 SVNATELWHCNEVTELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDSGKRVLRLIQEVR-EHTRAVTCLYVPSSGDK 1092 (1306)
Q Consensus 1016 ~Dg~I~IWd~~~~~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t~~~~~i~~l~-~H~~~V~sl~fspdg~~ 1092 (1306)
-++...-|..+....+...|-..|.++.-+|. +.+||+.||.|++|....+ +.+..++ .....|+.+.|+.+|+.
T Consensus 2188 ~~~~~~tq~~~~~~~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~--~~v~~~rt~g~s~vtr~~f~~qGnk 2265 (2439)
T KOG1064|consen 2188 LPWLGSTQTSRGASVMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHG--QQVVCFRTAGNSRVTRSRFNHQGNK 2265 (2439)
T ss_pred CCccccceecccceeEeecccCceeeecCCCCCceEEecCCCceEEEEeccCC--CeEEEeeccCcchhhhhhhcccCCc
Confidence 34444445555444455556677888888883 8999999999999999887 5555553 22378999999999999
Q ss_pred EEEEeCCCcEEEEEcCCCceeEEEee-cCCCCeEEEEe-CCcEE--EEEcCCCeEEEEEecCC----EEEeccCCCeEEE
Q 000744 1093 LYSGSLDKTIRVWSIKPEEIHCLQVH-NVKEAVHELTA-NAEIA--CFVSPATGVKVYNWSGA----IKHINFNKHVKSL 1164 (1306)
Q Consensus 1093 L~Sgs~DgtI~VWdi~~~~~~~i~~~-~~~~~V~sl~~-~~~~v--~~s~dg~~I~i~~~~~~----~~l~~~~~~V~sl 1164 (1306)
+..+..||.+.+|.+... .+... .|.....++.| ...++ --++|++.+.+||..-. .....|.+.++++
T Consensus 2266 ~~i~d~dg~l~l~q~~pk---~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l 2342 (2439)
T KOG1064|consen 2266 FGIVDGDGDLSLWQASPK---PYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVL 2342 (2439)
T ss_pred eeeeccCCceeecccCCc---ceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEE
Confidence 999999999999999853 22222 24456666666 22222 23577777888887621 2235689999999
Q ss_pred EEeCC--EEEEEECCCcEEEEECCCCceeEEecCcccccCCccEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEE
Q 000744 1165 VMTGD--KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSF 1242 (1306)
Q Consensus 1165 ~~s~d--~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l 1242 (1306)
++.|. .+++|+.+|.|++||++..+..+.|+. ++ ...++++++..| .|+||++.....++++
T Consensus 2343 ~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~--------------~~-~~~~f~~~ss~g-~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2343 AYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA--------------LD-TREYFVTGSSEG-NIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred EEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh--------------hh-hhheeeccCccc-ceEEEEccccchhhcC
Confidence 99988 499999999999999998887765431 33 444555666677 7999999998888888
Q ss_pred ec---CCC---EE--EEEEcCc-EEEEEECCCc
Q 000744 1243 TT---GID---IQ--HLAVNSD-FIFTATKCGT 1266 (1306)
Q Consensus 1243 ~~---~~~---V~--sla~spd-~Lasgs~Dg~ 1266 (1306)
++ ++. .. .+.+.+. .|.+|+.||+
T Consensus 2407 p~e~ak~gfFr~~g~Q~~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2407 PSEHAKQGFFRNIGMQINVGQCNRIFSCGADGT 2439 (2439)
T ss_pred chhhcccchhhhcCceeeeccCceEEEecCCCC
Confidence 73 222 12 2222333 7888888874
No 252
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.79 E-value=1.1e-07 Score=103.74 Aligned_cols=267 Identities=12% Similarity=0.084 Sum_probs=169.9
Q ss_pred cccEEEEEeCCCcEEEEeCCCceEEc-ccCCCCEEEEEEeCC---EEEEEECCCcEEEEeCCCCccceEEEEcccCccEE
Q 000744 1007 IQKALMNLSSVNATELWHCNEVTELD-SSTNGEVLSLIHLKG---RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVT 1082 (1306)
Q Consensus 1007 i~~~Lasgs~Dg~I~IWd~~~~~~i~-~~H~~~V~sl~fspd---~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~ 1082 (1306)
..+++|+.+.- .+-|=|..+.+-.. ..--..|.-+.|.-| .|.....|+.|.+|++... +-...+.....++.
T Consensus 19 ~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp--ew~ckIdeg~agls 95 (447)
T KOG4497|consen 19 CGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP--EWYCKIDEGQAGLS 95 (447)
T ss_pred CCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecc--eeEEEeccCCCcce
Confidence 34789988874 66677766532111 111345777888875 5667788999999999887 55667778888999
Q ss_pred EEEEcCCCC-EEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCC---EEE----
Q 000744 1083 CLYVPSSGD-KLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGA---IKH---- 1154 (1306)
Q Consensus 1083 sl~fspdg~-~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~---~~l---- 1154 (1306)
+++|||||+ .|.+...|-.|.||.+.+.+...+... +..+..++ +.+||+...+.....- +.+
T Consensus 96 ~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~p--K~~~kg~~-------f~~dg~f~ai~sRrDCkdyv~i~~c~ 166 (447)
T KOG4497|consen 96 SISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHP--KTNVKGYA-------FHPDGQFCAILSRRDCKDYVQISSCK 166 (447)
T ss_pred eeeECCCcceEeeeecceeEEEEEEeccceeEEeccc--ccCceeEE-------ECCCCceeeeeecccHHHHHHHHhhH
Confidence 999999995 566777899999999998743222222 34456666 8889987766554411 011
Q ss_pred -e---c----cCCCeEEEEEeCCEEEEEECCCcEEEEECCCCceeEEecCcccccCCccEEEEEEeCCcEEEEEEecCCC
Q 000744 1155 -I---N----FNKHVKSLVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLLFAGGSSVDGT 1226 (1306)
Q Consensus 1155 -~---~----~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~s~Dg~ 1226 (1306)
| + .+-..+.+.|+||. ..+-+||---.-.+..|.... .+..+.|+|.+.+++.|+.|+
T Consensus 167 ~W~ll~~f~~dT~DltgieWsPdg-------~~laVwd~~Leykv~aYe~~l------G~k~v~wsP~~qflavGsyD~- 232 (447)
T KOG4497|consen 167 AWILLKEFKLDTIDLTGIEWSPDG-------NWLAVWDNVLEYKVYAYERGL------GLKFVEWSPCNQFLAVGSYDQ- 232 (447)
T ss_pred HHHHHHhcCCCcccccCceECCCC-------cEEEEecchhhheeeeeeecc------ceeEEEeccccceEEeeccch-
Confidence 1 1 13345667777752 335566643222222222110 678899999888998898998
Q ss_pred EEEEEECCCCc------------------------------------------------------------eEEEEec--
Q 000744 1227 AGKVFSISSKT------------------------------------------------------------AVGSFTT-- 1244 (1306)
Q Consensus 1227 ~I~IWD~~t~~------------------------------------------------------------~l~~l~~-- 1244 (1306)
.+||.+--+.+ .+..++.
T Consensus 233 ~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~t 312 (447)
T KOG4497|consen 233 MLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPT 312 (447)
T ss_pred hhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCC
Confidence 67775432211 0111110
Q ss_pred -----CCCEEEEEEcCc--EEEEEECC--CcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCCCcc
Q 000744 1245 -----GIDIQHLAVNSD--FIFTATKC--GTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDGHPY 1305 (1306)
Q Consensus 1245 -----~~~V~sla~spd--~Lasgs~D--g~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~~L 1305 (1306)
..++.-++|++| +++|-.+. +.+-+||++..+....+. ...+|....|+|....|
T Consensus 313 D~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi------Qk~piraf~WdP~~prL 376 (447)
T KOG4497|consen 313 DFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI------QKHPIRAFEWDPGRPRL 376 (447)
T ss_pred CCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh------hccceeEEEeCCCCceE
Confidence 122667899999 66655433 678999999876555544 23478888888875443
No 253
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.77 E-value=1.8e-07 Score=116.05 Aligned_cols=181 Identities=12% Similarity=0.137 Sum_probs=131.6
Q ss_pred CEEEEEECCCcEEEEeCCCCccceEEEEcccCc----cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCC
Q 000744 1047 GRVLSSHSDGTIKMWDSGKRVLRLIQEVREHTR----AVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKE 1122 (1306)
Q Consensus 1047 d~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~----~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~ 1122 (1306)
..++.++.++.+.+||...+ .....+..... ...-+-++++.-++++|+.-+.|.+|+....+ .......|.+
T Consensus 100 k~i~l~~~~ns~~i~d~~~~--~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn-~p~~l~GHeG 176 (967)
T KOG0974|consen 100 KKIALVTSRNSLLIRDSKNS--SVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN-KPIRLKGHEG 176 (967)
T ss_pred ceEEEEEcCceEEEEecccC--ceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC-CcceecccCC
Confidence 48999999999999999877 44444432221 12223456677799999999999999987321 1222233334
Q ss_pred CeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCCEEEEEECCCcEEEEECCCCceeEEecCcccccC
Q 000744 1123 AVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLG 1202 (1306)
Q Consensus 1123 ~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~g 1202 (1306)
.|.++. ++.||+ ++++.|.|.++++|++.+.+... ....+
T Consensus 177 ~iF~i~-------~s~dg~----------------------------~i~s~SdDRsiRlW~i~s~~~~~-----~~~fg 216 (967)
T KOG0974|consen 177 SIFSIV-------TSLDGR----------------------------YIASVSDDRSIRLWPIDSREVLG-----CTGFG 216 (967)
T ss_pred ceEEEE-------EccCCc----------------------------EEEEEecCcceeeeecccccccC-----ccccc
Confidence 444444 344443 89999999999999999987654 24568
Q ss_pred Cc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEecC--CCEEEEEEcCc--EEEEEECCCcEEEEECCC
Q 000744 1203 KQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFTTG--IDIQHLAVNSD--FIFTATKCGTIEVWLKER 1274 (1306)
Q Consensus 1203 h~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~~--~~V~sla~spd--~Lasgs~Dg~I~IWd~~t 1274 (1306)
|+ .|+.++|.|+ .+++.+.|. +.++|+.+ +..+..+..| ..|..++..++ .++|++.||.+++|++..
T Consensus 217 HsaRvw~~~~~~n--~i~t~gedc-tcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 217 HSARVWACCFLPN--RIITVGEDC-TCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ccceeEEEEeccc--eeEEeccce-EEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 99 9999999998 555666888 99999765 4444466643 45999999988 999999999999999864
No 254
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.76 E-value=3.1e-09 Score=115.37 Aligned_cols=71 Identities=20% Similarity=0.313 Sum_probs=63.9
Q ss_pred CCCcccCcccccccCCcEEcCCCCcccHHHHHHHHHcCCCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHCC
Q 000744 340 PPKDFVCPITGQIFNDPVTLETGQTYERKAIQEWLKRGNTTCPITRQPLCSNSLPKTNYVLKRLITSWKEQYP 412 (1306)
Q Consensus 340 ~~~~~~CpIc~~l~~dPv~~~cGhtfc~~cI~~~~~~~~~~CP~c~~~l~~~~l~~~N~~L~~li~~~~~~~~ 412 (1306)
+..-++|-||.++|+-|++++||||||.-||+.++.. +..||.|........+. .|+.|..+|+.+.-.++
T Consensus 20 lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es~Lr-~n~il~Eiv~S~~~~R~ 90 (442)
T KOG0287|consen 20 LDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTESDLR-NNRILDEIVKSLNFARN 90 (442)
T ss_pred hHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCceecccchhhhh-hhhHHHHHHHHHHHHHH
Confidence 4478999999999999999999999999999999997 66799999999988885 89999999999876544
No 255
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.76 E-value=7.8e-07 Score=108.23 Aligned_cols=198 Identities=11% Similarity=-0.035 Sum_probs=124.9
Q ss_pred CcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCceeEEEeecCCCCeEEEEeCCc
Q 000744 1056 GTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLD---KTIRVWSIKPEEIHCLQVHNVKEAVHELTANAE 1132 (1306)
Q Consensus 1056 g~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~D---gtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~ 1132 (1306)
..|.++|..+. ..+.+..+...+.+..|+|||++|+.++.+ ..|.+||+.+++...+..+ ...+.+..
T Consensus 170 ~~l~~~d~~g~---~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~--~~~~~~~~---- 240 (417)
T TIGR02800 170 YELQVADYDGA---NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASF--PGMNGAPA---- 240 (417)
T ss_pred ceEEEEcCCCC---CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecC--CCCccceE----
Confidence 46888888654 234555677789999999999999877654 4799999988753333222 23333343
Q ss_pred EEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCCEEEEEECC--CcEEEEECCCCceeEEecCcccccCCc-cEEEE
Q 000744 1133 IACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGDKLYCGCSG--YSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSL 1209 (1306)
Q Consensus 1133 ~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~D--g~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl 1209 (1306)
|+|||+.+ +++.+.+ ..|++||+.+++..... .+. .....
T Consensus 241 ---~spDg~~l---------------------------~~~~~~~~~~~i~~~d~~~~~~~~l~-------~~~~~~~~~ 283 (417)
T TIGR02800 241 ---FSPDGSKL---------------------------AVSLSKDGNPDIYVMDLDGKQLTRLT-------NGPGIDTEP 283 (417)
T ss_pred ---ECCCCCEE---------------------------EEEECCCCCccEEEEECCCCCEEECC-------CCCCCCCCE
Confidence 67777622 2233333 45889999887654321 222 33456
Q ss_pred EEeCCcEEE-EEEecCC-CEEEEEECCCCceEEEEecCCCEEEEEEcCc--EEEEEECCC---cEEEEECCCCeEEEEEe
Q 000744 1210 HMHNGLLFA-GGSSVDG-TAGKVFSISSKTAVGSFTTGIDIQHLAVNSD--FIFTATKCG---TIEVWLKERVTRVASVK 1282 (1306)
Q Consensus 1210 ~~s~~~~ll-as~s~Dg-~~I~IWD~~t~~~l~~l~~~~~V~sla~spd--~Lasgs~Dg---~I~IWd~~tg~~l~~l~ 1282 (1306)
.|++++..+ .++..++ ..|++||..+++......+...+....|+|+ +++.++.++ .|.+||+.++.. ..+.
T Consensus 284 ~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~ 362 (417)
T TIGR02800 284 SWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLT 362 (417)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEcc
Confidence 788765443 3432222 1588889887765433335556788899998 777766665 789999988653 3333
Q ss_pred cccCCCCCCCeEEEEEcCCCCccC
Q 000744 1283 ANNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1283 ~~~~~~~~~~V~slafSpdg~~La 1306 (1306)
. . .......|+|||++|+
T Consensus 363 ~---~---~~~~~p~~spdg~~l~ 380 (417)
T TIGR02800 363 D---T---GLDESPSFAPNGRMIL 380 (417)
T ss_pred C---C---CCCCCceECCCCCEEE
Confidence 1 1 1234568999998764
No 256
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.75 E-value=1.4e-06 Score=106.65 Aligned_cols=230 Identities=11% Similarity=0.017 Sum_probs=132.2
Q ss_pred cEEEEeCCCc-eEEcccCCCCEEEEEEeCC--EEEEEEC-CC--cEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCE
Q 000744 1019 ATELWHCNEV-TELDSSTNGEVLSLIHLKG--RVLSSHS-DG--TIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDK 1092 (1306)
Q Consensus 1019 ~I~IWd~~~~-~~i~~~H~~~V~sl~fspd--~LaSgs~-Dg--~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~ 1092 (1306)
.+.++|..+. ......+...+.+..|+|| .|+..+. ++ .|.+||+.++..+.+..+. +......|+|||+.
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~---g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP---GINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC---CCcCCeeECCCCCE
Confidence 5667787653 3445566788999999996 5555443 33 5889999887433333333 33456899999997
Q ss_pred EE-EEeCCCc--EEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCC
Q 000744 1093 LY-SGSLDKT--IRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGD 1169 (1306)
Q Consensus 1093 L~-Sgs~Dgt--I~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d 1169 (1306)
|+ +.+.+|. |.+||+.+++...+.. +........ |+|||+.+.
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~~~lt~--~~~~~~~p~-------wSpDG~~I~------------------------- 321 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKALTRITR--HRAIDTEPS-------WHPDGKSLI------------------------- 321 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCeEECcc--CCCCccceE-------ECCCCCEEE-------------------------
Confidence 76 4566775 6777887764332221 112223333 677776322
Q ss_pred EEEEEECC--CcEEEEECCCCceeEEecCcccccCCccEEEEEEeCCcEEEEEEecCCC--EEEEEECCCCceEEEEecC
Q 000744 1170 KLYCGCSG--YSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLLFAGGSSVDGT--AGKVFSISSKTAVGSFTTG 1245 (1306)
Q Consensus 1170 ~L~sgs~D--g~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~s~Dg~--~I~IWD~~t~~~l~~l~~~ 1245 (1306)
++...+ ..|+++|+.+++..... ..++ ......|+|++.+++..+.+++ .|.++|+.+++.. .+...
T Consensus 322 --f~s~~~g~~~Iy~~dl~~g~~~~Lt-----~~g~-~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~ 392 (448)
T PRK04792 322 --FTSERGGKPQIYRVNLASGKVSRLT-----FEGE-QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST 392 (448)
T ss_pred --EEECCCCCceEEEEECCCCCEEEEe-----cCCC-CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC
Confidence 222222 35777788777654321 1111 2234678876654444333332 4566788877643 33322
Q ss_pred CCEEEEEEcCc---EEEEEECCCc--EEEEECCCCeEEEEEecccCCCCCCCeEEEEEcC
Q 000744 1246 IDIQHLAVNSD---FIFTATKCGT--IEVWLKERVTRVASVKANNSGGGHAKITCLGTGV 1300 (1306)
Q Consensus 1246 ~~V~sla~spd---~Lasgs~Dg~--I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSp 1300 (1306)
.......|+|| ++++...+|. +++++. +|.....+.. +.+.+...+|+|
T Consensus 393 ~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~-----~~g~~~~p~Wsp 446 (448)
T PRK04792 393 RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPA-----GQGEVKSPAWSP 446 (448)
T ss_pred CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcC-----CCCCcCCCccCC
Confidence 22234579998 4444444543 677787 4656666653 334677788887
No 257
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.75 E-value=3.1e-07 Score=108.36 Aligned_cols=263 Identities=14% Similarity=0.104 Sum_probs=174.0
Q ss_pred ccCCCCEEEEEEeC--CEEEEEECCCcEEEEeCCCCc-------------cceEEEEcccCccEEEEEEcCCCCEEEEEe
Q 000744 1033 SSTNGEVLSLIHLK--GRVLSSHSDGTIKMWDSGKRV-------------LRLIQEVREHTRAVTCLYVPSSGDKLYSGS 1097 (1306)
Q Consensus 1033 ~~H~~~V~sl~fsp--d~LaSgs~Dg~I~vWd~~t~~-------------~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs 1097 (1306)
...+....|+.|+. ++|++|+.||.++|..+.+.. ...-+++.||+..|.-+.|+.+.+.|-|..
T Consensus 11 iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD 90 (1189)
T KOG2041|consen 11 IPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD 90 (1189)
T ss_pred CCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccC
Confidence 44566788999997 499999999999999886531 123357789999999999999999999999
Q ss_pred CCCcEEEEEcCCCce-eEEEeecCCCCeEEEEe--CCcEEE-EEcCCCeEEEEEecCCEEEecc---CCCeEEEEEeCC-
Q 000744 1098 LDKTIRVWSIKPEEI-HCLQVHNVKEAVHELTA--NAEIAC-FVSPATGVKVYNWSGAIKHINF---NKHVKSLVMTGD- 1169 (1306)
Q Consensus 1098 ~DgtI~VWdi~~~~~-~~i~~~~~~~~V~sl~~--~~~~v~-~s~dg~~I~i~~~~~~~~l~~~---~~~V~sl~~s~d- 1169 (1306)
.+|.|.||-+-.+.+ +.......++.|.+++| .+..++ +-.||. |.+++.+|+ ++|+. ......+.|++|
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGa-vIVGsvdGN-RIwgKeLkg~~l~hv~ws~D~ 168 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGA-VIVGSVDGN-RIWGKELKGQLLAHVLWSEDL 168 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCC-EEEEeeccc-eecchhcchheccceeecccH
Confidence 999999999887751 11112224577889987 333333 334444 666666665 34543 233457788887
Q ss_pred -EEEEEECCCcEEEEECCCCc-------eeEEecCcccccCCccEEEEEEe--------CCcEEEEEEecCCCEEEEEEC
Q 000744 1170 -KLYCGCSGYSIQEVDLGNLT-------STTFYAGTKKLLGKQTIHSLHMH--------NGLLFAGGSSVDGTAGKVFSI 1233 (1306)
Q Consensus 1170 -~L~sgs~Dg~I~iwDl~~~~-------~~~~~~~~~~l~gh~~I~sl~~s--------~~~~llas~s~Dg~~I~IWD~ 1233 (1306)
.++.+-.+|.+++||....- +....++...-.+| .|-.+.|. |+...++.+-.+| .+.|..-
T Consensus 169 ~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~-kia~i~w~~g~~~~v~pdrP~lavcy~nG-r~QiMR~ 246 (1189)
T KOG2041|consen 169 EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPT-KIAEIEWNTGPYQPVPPDRPRLAVCYANG-RMQIMRS 246 (1189)
T ss_pred HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCc-cccceeeccCccccCCCCCCEEEEEEcCc-eehhhhh
Confidence 36677788999999976431 21111111111111 35555553 4555555553344 6777665
Q ss_pred CCCceEEEEecCCCEEEEEEcCc--EEEEEECC---------CcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCC
Q 000744 1234 SSKTAVGSFTTGIDIQHLAVNSD--FIFTATKC---------GTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDG 1302 (1306)
Q Consensus 1234 ~t~~~l~~l~~~~~V~sla~spd--~Lasgs~D---------g~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg 1302 (1306)
.+...-..+..+..|....|+++ .++.++.| +.|++|..- |+.+.+++. ....|++++|-..|
T Consensus 247 eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~-G~i~gtlkv-----pg~~It~lsWEg~g 320 (1189)
T KOG2041|consen 247 ENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY-GHIVGTLKV-----PGSCITGLSWEGTG 320 (1189)
T ss_pred cCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEeccc-hhheEEEec-----CCceeeeeEEcCCc
Confidence 55443344444567899999998 78877754 356666653 778888885 33579999998776
Q ss_pred Ccc
Q 000744 1303 HPY 1305 (1306)
Q Consensus 1303 ~~L 1305 (1306)
-.+
T Consensus 321 Lri 323 (1189)
T KOG2041|consen 321 LRI 323 (1189)
T ss_pred eEE
Confidence 544
No 258
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.73 E-value=3.9e-06 Score=99.66 Aligned_cols=267 Identities=11% Similarity=0.043 Sum_probs=150.5
Q ss_pred cEEEEEeCCCcEEEEeCCCceEEccc-CCCCEEEEEEeCC--EEEEE-ECCCcEEEEeCCCCccceEEEEccc-------
Q 000744 1009 KALMNLSSVNATELWHCNEVTELDSS-TNGEVLSLIHLKG--RVLSS-HSDGTIKMWDSGKRVLRLIQEVREH------- 1077 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~~~i~~~-H~~~V~sl~fspd--~LaSg-s~Dg~I~vWd~~t~~~~~i~~l~~H------- 1077 (1306)
++++.++.||.|.+||+.+.+.+..- -.....++++++| +++++ ..++.+.++|.++. ++++++...
T Consensus 49 r~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl--e~v~~I~~~~~~~~~~ 126 (369)
T PF02239_consen 49 RYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETL--EPVKTIPTGGMPVDGP 126 (369)
T ss_dssp SEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT----EEEEEE--EE-TTTS
T ss_pred CEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEeccccc--cceeeccccccccccc
Confidence 77888889999999999875433221 2334678999986 66655 57899999999998 788877543
Q ss_pred CccEEEEEEcCCCCEEEEEeCC-CcEEEEEcCCCceeEEEeecCCCCeEEEEe--CC-cEEEEEcCCCeEEEEEecCCEE
Q 000744 1078 TRAVTCLYVPSSGDKLYSGSLD-KTIRVWSIKPEEIHCLQVHNVKEAVHELTA--NA-EIACFVSPATGVKVYNWSGAIK 1153 (1306)
Q Consensus 1078 ~~~V~sl~fspdg~~L~Sgs~D-gtI~VWdi~~~~~~~i~~~~~~~~V~sl~~--~~-~~v~~s~dg~~I~i~~~~~~~~ 1153 (1306)
...+..|..+|....++..-.| +.|-+-|....+.................| +. .++......+.+.+++......
T Consensus 127 ~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~ 206 (369)
T PF02239_consen 127 ESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL 206 (369)
T ss_dssp ---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE
T ss_pred CCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceE
Confidence 3467888888888866655554 777666776654233333333455566664 11 1222223333444555543322
Q ss_pred E--ec-----cCCCeE-----------EEEEeCCEEEEEECCCcEEEEECCCCceeEEecCcccccCCccEEEEEEeCCc
Q 000744 1154 H--IN-----FNKHVK-----------SLVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGL 1215 (1306)
Q Consensus 1154 l--~~-----~~~~V~-----------sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~ 1215 (1306)
. .+ |...+. ...-.....++.-..+.+.+||..+.+.++.+... |. + .-+..+|++
T Consensus 207 v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~----G~-g-lFi~thP~s 280 (369)
T PF02239_consen 207 VALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQ----GG-G-LFIKTHPDS 280 (369)
T ss_dssp EEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-S----SS-S---EE--TT-
T ss_pred EEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECC----CC-c-ceeecCCCC
Confidence 1 11 122222 21111222223333345667888888888865522 11 3 566778887
Q ss_pred EEEEEE---ecCCCEEEEEECCCCceEEEEec--CCCEEEEEEcCc----EEEEEECCCcEEEEECCCCeEEEEEec
Q 000744 1216 LFAGGS---SVDGTAGKVFSISSKTAVGSFTT--GIDIQHLAVNSD----FIFTATKCGTIEVWLKERVTRVASVKA 1283 (1306)
Q Consensus 1216 ~llas~---s~Dg~~I~IWD~~t~~~l~~l~~--~~~V~sla~spd----~Lasgs~Dg~I~IWd~~tg~~l~~l~~ 1283 (1306)
.++... +.+..+|.++|.++.+.+.++.. +..+..+.|+++ ++.....+|.|.|||..|.+.++.++.
T Consensus 281 ~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~~ 357 (369)
T PF02239_consen 281 RYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIPV 357 (369)
T ss_dssp SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE-
T ss_pred ccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEEe
Confidence 776665 33445899999999988888873 345999999998 333333444899999999999999874
No 259
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.72 E-value=7.3e-07 Score=104.99 Aligned_cols=180 Identities=11% Similarity=0.152 Sum_probs=128.1
Q ss_pred cEEEEEeCCCcEEEEeCCCc-eEEcc---cC-CCCEEEEEEe------C--------------C--EEEEEECCCcEEEE
Q 000744 1009 KALMNLSSVNATELWHCNEV-TELDS---ST-NGEVLSLIHL------K--------------G--RVLSSHSDGTIKMW 1061 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~-~~i~~---~H-~~~V~sl~fs------p--------------d--~LaSgs~Dg~I~vW 1061 (1306)
.++|....||.+++||.... .+..+ .| .+..++..|. | + .++-|...|.|.+|
T Consensus 6 ~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~y 85 (541)
T KOG4547|consen 6 DYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLY 85 (541)
T ss_pred heEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEE
Confidence 57999999999999998642 11111 12 4455555552 2 1 78899999999999
Q ss_pred eCCCCccceEEEEc--ccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcC
Q 000744 1062 DSGKRVLRLIQEVR--EHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSP 1139 (1306)
Q Consensus 1062 d~~t~~~~~i~~l~--~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~d 1139 (1306)
++..+ +....+. .|.+.|+++.++.+-..|.|++.|+.+..|+...+...++..-. +..+.+++ .+||
T Consensus 86 s~~~g--~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~-~~~~~sl~-------is~D 155 (541)
T KOG4547|consen 86 SVAGG--EITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQ-KPLVSSLC-------ISPD 155 (541)
T ss_pred EecCC--eEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccC-CCccceEE-------EcCC
Confidence 99998 5555554 69999999999998899999999999999999886432222111 12333333 5555
Q ss_pred CCeEEEEEecCCEEEeccCCCeEEEEEeCCEEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeC-----
Q 000744 1140 ATGVKVYNWSGAIKHINFNKHVKSLVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHN----- 1213 (1306)
Q Consensus 1140 g~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~----- 1213 (1306)
|. .+++++ +.|++||+.+++.+..|+ ||. +|+++.|.-
T Consensus 156 ~~----------------------------~l~~as--~~ik~~~~~~kevv~~ft------gh~s~v~t~~f~~~~~g~ 199 (541)
T KOG4547|consen 156 GK----------------------------ILLTAS--RQIKVLDIETKEVVITFT------GHGSPVRTLSFTTLIDGI 199 (541)
T ss_pred CC----------------------------EEEecc--ceEEEEEccCceEEEEec------CCCcceEEEEEEEecccc
Confidence 54 455554 789999999999999776 555 999999962
Q ss_pred -CcEEEEEEecCCCEEEEEECCC
Q 000744 1214 -GLLFAGGSSVDGTAGKVFSISS 1235 (1306)
Q Consensus 1214 -~~~llas~s~Dg~~I~IWD~~t 1235 (1306)
+..++.+...+. -|.+|-+..
T Consensus 200 ~G~~vLssa~~~r-~i~~w~v~~ 221 (541)
T KOG4547|consen 200 IGKYVLSSAAAER-GITVWVVEK 221 (541)
T ss_pred ccceeeecccccc-ceeEEEEEc
Confidence 345555554454 588887644
No 260
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.72 E-value=7.7e-09 Score=80.61 Aligned_cols=38 Identities=32% Similarity=0.811 Sum_probs=33.6
Q ss_pred CcccccccCCc-EEcCCCCcccHHHHHHHHHcCCCCCCCC
Q 000744 346 CPITGQIFNDP-VTLETGQTYERKAIQEWLKRGNTTCPIT 384 (1306)
Q Consensus 346 CpIc~~l~~dP-v~~~cGhtfc~~cI~~~~~~~~~~CP~c 384 (1306)
||||.+.+.+| ++++|||+||+.||++|++. +..||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 58899999999999999998 6789987
No 261
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.71 E-value=3.5e-05 Score=89.86 Aligned_cols=253 Identities=11% Similarity=0.065 Sum_probs=155.9
Q ss_pred CcEEEEeCCCceE---EcccCCCCEEEEEEeCC--EEEEEE----------CCCcEEEEeCCCCccceEEEEcccC----
Q 000744 1018 NATELWHCNEVTE---LDSSTNGEVLSLIHLKG--RVLSSH----------SDGTIKMWDSGKRVLRLIQEVREHT---- 1078 (1306)
Q Consensus 1018 g~I~IWd~~~~~~---i~~~H~~~V~sl~fspd--~LaSgs----------~Dg~I~vWd~~t~~~~~i~~l~~H~---- 1078 (1306)
++|.+.|..+... +..+..... + ++|| .|+.+. .+..|.+||..+. +.+..+.--.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~--~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~--~~~~~i~~p~~p~~ 101 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP--V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH--LPIADIELPEGPRF 101 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce--e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccC--cEEeEEccCCCchh
Confidence 8999999876332 333333332 3 7776 454444 4889999999999 7787775322
Q ss_pred ---ccEEEEEEcCCCCEEEEEe-C-CCcEEEEEcCCCceeEEEeecCCCCeEEEEe-CCcEEEEEcCCCeEEEEEec-CC
Q 000744 1079 ---RAVTCLYVPSSGDKLYSGS-L-DKTIRVWSIKPEEIHCLQVHNVKEAVHELTA-NAEIACFVSPATGVKVYNWS-GA 1151 (1306)
Q Consensus 1079 ---~~V~sl~fspdg~~L~Sgs-~-DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~-~~~~v~~s~dg~~I~i~~~~-~~ 1151 (1306)
..-..++++|||++++... . +..|.|.|+.+++ .+......+...-... ...+...+.||....+-.-+ |+
T Consensus 102 ~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~k--vv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~ 179 (352)
T TIGR02658 102 LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKA--FVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGN 179 (352)
T ss_pred hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCc--EEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCc
Confidence 2234788999999999776 3 6899999999985 3333332232222222 44555667777755533322 22
Q ss_pred EE-----Eecc------CCCeEEEEEeC--C-EEEEEECCCcEEEEECCCCc-----eeEEecCcccccC--CccEEEEE
Q 000744 1152 IK-----HINF------NKHVKSLVMTG--D-KLYCGCSGYSIQEVDLGNLT-----STTFYAGTKKLLG--KQTIHSLH 1210 (1306)
Q Consensus 1152 ~~-----l~~~------~~~V~sl~~s~--d-~L~sgs~Dg~I~iwDl~~~~-----~~~~~~~~~~l~g--h~~I~sl~ 1210 (1306)
.. +... ..+ .|.+ + .+++... |+|.+.|+.... ....+.....-.+ ...+.-++
T Consensus 180 ~~~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia 254 (352)
T TIGR02658 180 PKIKPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVA 254 (352)
T ss_pred eEEeeeeeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEE
Confidence 11 1111 111 2232 3 4555544 999999965432 2222211100000 00233488
Q ss_pred EeCC-cEEEEEEe-c-------CCCEEEEEECCCCceEEEEecCCCEEEEEEcCc---EEEEEE-CCCcEEEEECCCCeE
Q 000744 1211 MHNG-LLFAGGSS-V-------DGTAGKVFSISSKTAVGSFTTGIDIQHLAVNSD---FIFTAT-KCGTIEVWLKERVTR 1277 (1306)
Q Consensus 1211 ~s~~-~~llas~s-~-------Dg~~I~IWD~~t~~~l~~l~~~~~V~sla~spd---~Lasgs-~Dg~I~IWd~~tg~~ 1277 (1306)
++++ +.+.+... . .++.|.++|..+++.+..+.-+..+..++++|| .+++.+ .++.|.|.|..+++.
T Consensus 255 ~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 255 YHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKE 334 (352)
T ss_pred EcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeE
Confidence 8844 44444221 0 113799999999999999998889999999998 555444 688999999999999
Q ss_pred EEEEe
Q 000744 1278 VASVK 1282 (1306)
Q Consensus 1278 l~~l~ 1282 (1306)
++++.
T Consensus 335 i~~i~ 339 (352)
T TIGR02658 335 LSSVN 339 (352)
T ss_pred Eeeec
Confidence 99984
No 262
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.71 E-value=1.7e-06 Score=105.21 Aligned_cols=217 Identities=12% Similarity=0.010 Sum_probs=129.5
Q ss_pred CCcEEEEeCCC-ceEEcccCCCCEEEEEEeCC--EEEEEECC---CcEEEEeCCCCccceEEEEcccCccEEEEEEcCCC
Q 000744 1017 VNATELWHCNE-VTELDSSTNGEVLSLIHLKG--RVLSSHSD---GTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSG 1090 (1306)
Q Consensus 1017 Dg~I~IWd~~~-~~~i~~~H~~~V~sl~fspd--~LaSgs~D---g~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg 1090 (1306)
...|.++|... .......+...+.+..|+|| +|+.++.+ ..|++||+.++. . ..+..+.+.+.++.|+|||
T Consensus 169 ~~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~--~-~~~~~~~~~~~~~~~spDg 245 (417)
T TIGR02800 169 RYELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ--R-EKVASFPGMNGAPAFSPDG 245 (417)
T ss_pred cceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC--E-EEeecCCCCccceEECCCC
Confidence 34677888763 34444566778999999996 66665543 479999999873 2 2333455667789999999
Q ss_pred CEEE-EEeCCC--cEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEe
Q 000744 1091 DKLY-SGSLDK--TIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMT 1167 (1306)
Q Consensus 1091 ~~L~-Sgs~Dg--tI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s 1167 (1306)
+.|+ +.+.++ .|.+||+.++....+... ........ +++||+
T Consensus 246 ~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~--~~~~~~~~-------~s~dg~-------------------------- 290 (417)
T TIGR02800 246 SKLAVSLSKDGNPDIYVMDLDGKQLTRLTNG--PGIDTEPS-------WSPDGK-------------------------- 290 (417)
T ss_pred CEEEEEECCCCCccEEEEECCCCCEEECCCC--CCCCCCEE-------ECCCCC--------------------------
Confidence 8775 455444 588888887643322211 12222222 556665
Q ss_pred CCEEEEEEC-C--CcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCC--CEEEEEECCCCceEEE
Q 000744 1168 GDKLYCGCS-G--YSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDG--TAGKVFSISSKTAVGS 1241 (1306)
Q Consensus 1168 ~d~L~sgs~-D--g~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg--~~I~IWD~~t~~~l~~ 1241 (1306)
+|+..+. + ..|++||+.+++..... .+. .+....|+|++.+++.++.++ ..|.+||+.++.. ..
T Consensus 291 --~l~~~s~~~g~~~iy~~d~~~~~~~~l~-------~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~ 360 (417)
T TIGR02800 291 --SIAFTSDRGGSPQIYMMDADGGEVRRLT-------FRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RV 360 (417)
T ss_pred --EEEEEECCCCCceEEEEECCCCCEEEee-------cCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EE
Confidence 3433332 2 25888888877644321 112 556778887765555544443 2688999887654 33
Q ss_pred EecCCCEEEEEEcCc--EEEEEECCC---cEEEEECCCCeEEEEEe
Q 000744 1242 FTTGIDIQHLAVNSD--FIFTATKCG---TIEVWLKERVTRVASVK 1282 (1306)
Q Consensus 1242 l~~~~~V~sla~spd--~Lasgs~Dg---~I~IWd~~tg~~l~~l~ 1282 (1306)
+..........|+|+ +|+..+.++ .+++.+.. |+....+.
T Consensus 361 l~~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~ 405 (417)
T TIGR02800 361 LTDTGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLP 405 (417)
T ss_pred ccCCCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECC
Confidence 333333456689988 565555443 35555543 44555554
No 263
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.70 E-value=3.6e-06 Score=102.91 Aligned_cols=230 Identities=9% Similarity=-0.019 Sum_probs=133.3
Q ss_pred cEEEEeCCCc-eEEcccCCCCEEEEEEeCC--EEEEEECC---CcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCE
Q 000744 1019 ATELWHCNEV-TELDSSTNGEVLSLIHLKG--RVLSSHSD---GTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDK 1092 (1306)
Q Consensus 1019 ~I~IWd~~~~-~~i~~~H~~~V~sl~fspd--~LaSgs~D---g~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~ 1092 (1306)
.|.++|..+. ......+...+....|+|| .|+..+.+ ..|.+||+.++..+. +....+.+....|+|||+.
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~---l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ---ITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE---ccCCCCCcCCeEECCCCCE
Confidence 4777777643 3334567778999999996 66655533 369999999883322 3333344557899999998
Q ss_pred EE-EEeCCC--cEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCC
Q 000744 1093 LY-SGSLDK--TIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGD 1169 (1306)
Q Consensus 1093 L~-Sgs~Dg--tI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d 1169 (1306)
|+ +.+.+| .|.+||+.+++...+.. +........ |+|||+.
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~~~lt~--~~~~~~~~~-------~spDg~~--------------------------- 300 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQLSRVTN--HPAIDTEPF-------WGKDGRT--------------------------- 300 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCeEEccc--CCCCcCCeE-------ECCCCCE---------------------------
Confidence 76 555555 57788988875333221 112222222 6777763
Q ss_pred EEEEEE-CC--CcEEEEECCCCceeEEecCcccccCCccEEEEEEeCCcEEEEEEecCCC--EEEEEECCCCceEEEEec
Q 000744 1170 KLYCGC-SG--YSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLLFAGGSSVDGT--AGKVFSISSKTAVGSFTT 1244 (1306)
Q Consensus 1170 ~L~sgs-~D--g~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~s~Dg~--~I~IWD~~t~~~l~~l~~ 1244 (1306)
++..+ .+ ..|+++|+.+++...... .+. ......|+|++..++..+.+++ .|.+||+.+++. ..+..
T Consensus 301 -i~f~s~~~g~~~iy~~d~~~g~~~~lt~-----~~~-~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~ 372 (430)
T PRK00178 301 -LYFTSDRGGKPQIYKVNVNGGRAERVTF-----VGN-YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILTD 372 (430)
T ss_pred -EEEEECCCCCceEEEEECCCCCEEEeec-----CCC-CccceEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEccC
Confidence 32222 22 357778888776543211 111 2334678876655554433322 588899988764 33433
Q ss_pred CCCEEEEEEcCc--EE-EEEECCC--cEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCC
Q 000744 1245 GIDIQHLAVNSD--FI-FTATKCG--TIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVD 1301 (1306)
Q Consensus 1245 ~~~V~sla~spd--~L-asgs~Dg--~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpd 1301 (1306)
........|+|| ++ ++...+| .|.+++.. |.....+.. +.+.+...+|+|-
T Consensus 373 ~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~-----~~g~~~~p~ws~~ 428 (430)
T PRK00178 373 TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPT-----AQGEVREPSWSPY 428 (430)
T ss_pred CCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcC-----CCCCcCCCccCCC
Confidence 222335689998 44 4444333 46777775 344444542 2345677778863
No 264
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.66 E-value=2.7e-06 Score=104.01 Aligned_cols=197 Identities=9% Similarity=-0.001 Sum_probs=119.8
Q ss_pred cEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcE
Q 000744 1057 TIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLD---KTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEI 1133 (1306)
Q Consensus 1057 ~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~D---gtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~ 1133 (1306)
.|.++|.+++ . .+.+..+...+....|+|||+.|+..+.+ ..|.+||+.+++.+.+.... +.+....
T Consensus 180 ~l~~~d~~g~--~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~--g~~~~~~----- 249 (430)
T PRK00178 180 TLQRSDYDGA--R-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFE--GLNGAPA----- 249 (430)
T ss_pred EEEEECCCCC--C-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCC--CCcCCeE-----
Confidence 4778888765 2 34555677789999999999998876644 35888999887544332222 2222333
Q ss_pred EEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCCEEEEEECCC--cEEEEECCCCceeEEecCcccccCCc-cEEEEE
Q 000744 1134 ACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGDKLYCGCSGY--SIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLH 1210 (1306)
Q Consensus 1134 v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~Dg--~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~ 1210 (1306)
|+|||+.+. ++.+.+| .|++||+.+++.... . .+. ......
T Consensus 250 --~SpDG~~la---------------------------~~~~~~g~~~Iy~~d~~~~~~~~l-t------~~~~~~~~~~ 293 (430)
T PRK00178 250 --WSPDGSKLA---------------------------FVLSKDGNPEIYVMDLASRQLSRV-T------NHPAIDTEPF 293 (430)
T ss_pred --ECCCCCEEE---------------------------EEEccCCCceEEEEECCCCCeEEc-c------cCCCCcCCeE
Confidence 777776322 2333333 688889998765432 1 222 345567
Q ss_pred EeCCcE-EEEEEecCC-CEEEEEECCCCceEEEEecCCCEEEEEEcCc--EEEEEEC-CC--cEEEEECCCCeEEEEEec
Q 000744 1211 MHNGLL-FAGGSSVDG-TAGKVFSISSKTAVGSFTTGIDIQHLAVNSD--FIFTATK-CG--TIEVWLKERVTRVASVKA 1283 (1306)
Q Consensus 1211 ~s~~~~-llas~s~Dg-~~I~IWD~~t~~~l~~l~~~~~V~sla~spd--~Lasgs~-Dg--~I~IWd~~tg~~l~~l~~ 1283 (1306)
|+|++. ++.++..++ ..|++||+.+++...............|+|+ +|+..+. ++ .|.+||+.+++. ..+..
T Consensus 294 ~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~ 372 (430)
T PRK00178 294 WGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILTD 372 (430)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEccC
Confidence 886654 444442222 2588888888775332222233456789998 5555443 33 588899988764 34432
Q ss_pred ccCCCCCCCeEEEEEcCCCCccC
Q 000744 1284 NNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1284 ~~~~~~~~~V~slafSpdg~~La 1306 (1306)
. . ......|+|||++|+
T Consensus 373 ---~-~--~~~~p~~spdg~~i~ 389 (430)
T PRK00178 373 ---T-S--LDESPSVAPNGTMLI 389 (430)
T ss_pred ---C-C--CCCCceECCCCCEEE
Confidence 1 1 122458999999874
No 265
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.66 E-value=7.5e-07 Score=96.28 Aligned_cols=98 Identities=8% Similarity=0.214 Sum_probs=73.1
Q ss_pred EcccCCCCEEEEEEeCC--E--EEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCC---CcEE
Q 000744 1031 LDSSTNGEVLSLIHLKG--R--VLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLD---KTIR 1103 (1306)
Q Consensus 1031 i~~~H~~~V~sl~fspd--~--LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~D---gtI~ 1103 (1306)
+.....++|.+++|+|+ . +++|..++.|.+||++. +.+..+. ...+..+.|+|+|+++++|+.+ |.|.
T Consensus 54 i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~---~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~ 128 (194)
T PF08662_consen 54 IELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG---KKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLE 128 (194)
T ss_pred eeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc---cEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEE
Confidence 33445678999999995 4 34456788999999973 5677764 5678899999999999998754 6699
Q ss_pred EEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeE
Q 000744 1104 VWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGV 1143 (1306)
Q Consensus 1104 VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I 1143 (1306)
+||+++. +.+....+. .+..++ |+|||+.+
T Consensus 129 ~wd~~~~--~~i~~~~~~-~~t~~~-------WsPdGr~~ 158 (194)
T PF08662_consen 129 FWDVRKK--KKISTFEHS-DATDVE-------WSPDGRYL 158 (194)
T ss_pred EEECCCC--EEeeccccC-cEEEEE-------EcCCCCEE
Confidence 9999975 555555543 356666 88998843
No 266
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.65 E-value=8.8e-05 Score=87.94 Aligned_cols=284 Identities=14% Similarity=0.148 Sum_probs=167.5
Q ss_pred EEEEeCC----CcEEEEeCC--C--ceEEc-ccCCCCEEEEEEeCC--EEEEEEC----CCcEEEEeCCC--CccceEEE
Q 000744 1011 LMNLSSV----NATELWHCN--E--VTELD-SSTNGEVLSLIHLKG--RVLSSHS----DGTIKMWDSGK--RVLRLIQE 1073 (1306)
Q Consensus 1011 Lasgs~D----g~I~IWd~~--~--~~~i~-~~H~~~V~sl~fspd--~LaSgs~----Dg~I~vWd~~t--~~~~~i~~ 1073 (1306)
++.|+.+ +.|.+|++. + ...+. ..-......++++|+ +|++... +|.|..|++.. +..+.+.+
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 3455554 789999883 2 11111 123445667888875 7888776 57999999865 44455556
Q ss_pred EcccCccEEEEEEcCCCCEEEEEeC-CCcEEEEEcCC-Cce-eEEEeec-----------CCCCeEEEEe--CCcEE-EE
Q 000744 1074 VREHTRAVTCLYVPSSGDKLYSGSL-DKTIRVWSIKP-EEI-HCLQVHN-----------VKEAVHELTA--NAEIA-CF 1136 (1306)
Q Consensus 1074 l~~H~~~V~sl~fspdg~~L~Sgs~-DgtI~VWdi~~-~~~-~~i~~~~-----------~~~~V~sl~~--~~~~v-~~ 1136 (1306)
..........++++|++++++++.. +|+|.++++.. +.. ....... ......++.+ ++..+ ..
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 5544556678999999999998875 89999999987 332 2211221 1234556664 12222 22
Q ss_pred EcCCCeEEEEEecCC---EEE-----eccCCCeEEEEEeCC--EE-EEEECCCcEEEEECC--CCce--eEEecCcc-cc
Q 000744 1137 VSPATGVKVYNWSGA---IKH-----INFNKHVKSLVMTGD--KL-YCGCSGYSIQEVDLG--NLTS--TTFYAGTK-KL 1200 (1306)
Q Consensus 1137 s~dg~~I~i~~~~~~---~~l-----~~~~~~V~sl~~s~d--~L-~sgs~Dg~I~iwDl~--~~~~--~~~~~~~~-~l 1200 (1306)
.-....|.+++++.. ... .........+.|+++ ++ ++.-.+++|.+|++. ++.. ........ ..
T Consensus 162 dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 241 (345)
T PF10282_consen 162 DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF 241 (345)
T ss_dssp ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS
T ss_pred ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc
Confidence 222334556666532 111 234567889999977 55 445568889999988 4432 22222111 11
Q ss_pred cCCccEEEEEEeCCcEEEEEEecCCCEEEEEECC--CCc--eEEEEec-CCCEEEEEEcCc--EEEEEE-CCCcEEEEEC
Q 000744 1201 LGKQTIHSLHMHNGLLFAGGSSVDGTAGKVFSIS--SKT--AVGSFTT-GIDIQHLAVNSD--FIFTAT-KCGTIEVWLK 1272 (1306)
Q Consensus 1201 ~gh~~I~sl~~s~~~~llas~s~Dg~~I~IWD~~--t~~--~l~~l~~-~~~V~sla~spd--~Lasgs-~Dg~I~IWd~ 1272 (1306)
.+......|.++|++.++..+....++|.+|++. ++. .+..+.. ......++++|+ +|+++. .++.|.+|++
T Consensus 242 ~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 242 TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence 1222577899998776655554555589999993 343 3334443 455899999988 666665 6689999976
Q ss_pred --CCCeEEEEEecccCCCCCCCeEEEEE
Q 000744 1273 --ERVTRVASVKANNSGGGHAKITCLGT 1298 (1306)
Q Consensus 1273 --~tg~~l~~l~~~~~~~~~~~V~slaf 1298 (1306)
.+|.....-.. ..-....||.|
T Consensus 322 d~~tG~l~~~~~~----~~~~~p~ci~f 345 (345)
T PF10282_consen 322 DPDTGKLTPVGSS----VPIPSPVCIVF 345 (345)
T ss_dssp ETTTTEEEEEEEE----EESSSEEEEEE
T ss_pred eCCCCcEEEeccc----ccCCCCEEEeC
Confidence 57765444321 01245677776
No 267
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.64 E-value=2.5e-06 Score=101.03 Aligned_cols=255 Identities=13% Similarity=0.068 Sum_probs=159.6
Q ss_pred cEEEEEeCCCcEEEEeCCC-----------------ceEEcccCCCCEEEEEEeCC--EEEEEECCCcEEEEeCCCCccc
Q 000744 1009 KALMNLSSVNATELWHCNE-----------------VTELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDSGKRVLR 1069 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~-----------------~~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t~~~~ 1069 (1306)
.++|.|+.||.+++-.+.+ ..+...||++.|.-+.|+.+ .|-|...+|.|.||-+-+|.|-
T Consensus 27 gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~ 106 (1189)
T KOG2041|consen 27 GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWC 106 (1189)
T ss_pred CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHH
Confidence 7899999999999998752 23455799999999999974 8999999999999999888543
Q ss_pred eEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEe--CCcEEEEEcCCCeEEEEE
Q 000744 1070 LIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTA--NAEIACFVSPATGVKVYN 1147 (1306)
Q Consensus 1070 ~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~--~~~~v~~s~dg~~I~i~~ 1147 (1306)
.-..-...+..|.+++|+.||..++..-.||.|.|=.+..+. .+..--.......+.| +...+.+.-......+++
T Consensus 107 EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR--IwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlyd 184 (1189)
T KOG2041|consen 107 EEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR--IWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYD 184 (1189)
T ss_pred HHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce--ecchhcchheccceeecccHHHHHhhhcCCcEEEec
Confidence 333334456779999999999999999999998887776642 1110000011223332 111111111112244444
Q ss_pred ecCCE--------------EEeccCCCeEEEEEe--------CC--EEEEEECCCcEEEEECCCCceeEEecCcccccCC
Q 000744 1148 WSGAI--------------KHINFNKHVKSLVMT--------GD--KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGK 1203 (1306)
Q Consensus 1148 ~~~~~--------------~l~~~~~~V~sl~~s--------~d--~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh 1203 (1306)
..|+. .+.+....|..+.|. |+ .++++..+|.+++..-.+......+...
T Consensus 185 nqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg------ 258 (1189)
T KOG2041|consen 185 NQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG------ 258 (1189)
T ss_pred ccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc------
Confidence 44321 111233446666665 23 4888889999888755544332222211
Q ss_pred ccEEEEEEeCCcEEEEEEecCC--------CEEEEEECCCCceEEEEe-cCCCEEEEEEcCc-EEEEEECCCcEEEEEC
Q 000744 1204 QTIHSLHMHNGLLFAGGSSVDG--------TAGKVFSISSKTAVGSFT-TGIDIQHLAVNSD-FIFTATKCGTIEVWLK 1272 (1306)
Q Consensus 1204 ~~I~sl~~s~~~~llas~s~Dg--------~~I~IWD~~t~~~l~~l~-~~~~V~sla~spd-~Lasgs~Dg~I~IWd~ 1272 (1306)
-.|....|++++.+++.++.|. +.|.+|. .-|+.+.+++ .+..|++++|-.. .=+.-.-|+.|++=++
T Consensus 259 m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA~AvdsfiyfanI 336 (1189)
T KOG2041|consen 259 MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIAIAVDSFIYFANI 336 (1189)
T ss_pred cEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceEEEEEecceEEEEee
Confidence 1678889998887777665442 2455554 3367778887 4566999999776 2222234566655444
No 268
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.63 E-value=1.5e-08 Score=107.80 Aligned_cols=70 Identities=19% Similarity=0.290 Sum_probs=61.2
Q ss_pred CCCcccCcccccccCCcEEcCCCCcccHHHHHHHHHcCCCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHC
Q 000744 340 PPKDFVCPITGQIFNDPVTLETGQTYERKAIQEWLKRGNTTCPITRQPLCSNSLPKTNYVLKRLITSWKEQY 411 (1306)
Q Consensus 340 ~~~~~~CpIc~~l~~dPv~~~cGhtfc~~cI~~~~~~~~~~CP~c~~~l~~~~l~~~N~~L~~li~~~~~~~ 411 (1306)
+..-++|.||.+.+.-|+.++||||||.-||.+++.. +..||+|+.......+. -|..++..++.+..-.
T Consensus 22 LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~esrlr-~~s~~~ei~es~~~~r 91 (391)
T COG5432 22 LDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCESRLR-GSSGSREINESHARNR 91 (391)
T ss_pred chhHHHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccccHHhhhcc-cchhHHHHHHhhhhcc
Confidence 3477899999999999999999999999999999987 66799999998888885 7888888888776543
No 269
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.62 E-value=9.2e-07 Score=95.83 Aligned_cols=222 Identities=18% Similarity=0.162 Sum_probs=141.6
Q ss_pred EEEEEeCCCcEEEEeCCCceE--Eccc---CCC---CEEEEEEeC--CEEEEEECCCcEEEEeCCCCccceEEEEcccCc
Q 000744 1010 ALMNLSSVNATELWHCNEVTE--LDSS---TNG---EVLSLIHLK--GRVLSSHSDGTIKMWDSGKRVLRLIQEVREHTR 1079 (1306)
Q Consensus 1010 ~Lasgs~Dg~I~IWd~~~~~~--i~~~---H~~---~V~sl~fsp--d~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~ 1079 (1306)
.++-+..+|.|.++....... .+.+ -.- .-.++.|++ ..++++..+|.+.+-+......+.+++++.|.-
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~ 166 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEF 166 (339)
T ss_pred eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccce
Confidence 466667778888887653211 1111 111 234667776 489999999999977776665566678999999
Q ss_pred cEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccC
Q 000744 1080 AVTCLYVPS-SGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFN 1158 (1306)
Q Consensus 1080 ~V~sl~fsp-dg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~ 1158 (1306)
+++...|+. +.+.+++||.|+.+..||++..+ .++.... - -|.
T Consensus 167 E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-~~i~~n~--------------------k---------------vH~ 210 (339)
T KOG0280|consen 167 EAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-TFIWHNS--------------------K---------------VHT 210 (339)
T ss_pred eeeeeecccCCCceEEecCCCceEEEEEecCCc-ceeeecc--------------------e---------------eee
Confidence 999999987 56799999999999999999432 1111100 0 034
Q ss_pred CCeEEEEEeCC---EEEEEECCCcEEEEECCC-CceeEEecCcccccCCccEEEEEEeCC--cEEEEEEecCCCEEEEEE
Q 000744 1159 KHVKSLVMTGD---KLYCGCSGYSIQEVDLGN-LTSTTFYAGTKKLLGKQTIHSLHMHNG--LLFAGGSSVDGTAGKVFS 1232 (1306)
Q Consensus 1159 ~~V~sl~~s~d---~L~sgs~Dg~I~iwDl~~-~~~~~~~~~~~~l~gh~~I~sl~~s~~--~~llas~s~Dg~~I~IWD 1232 (1306)
..|.||.-+|. ++++|+.|-.|++||.++ ++++..- .+.| .|+.+..+|. +.+++.+-++| .+|-+
T Consensus 211 ~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~----~v~G--GVWRi~~~p~~~~~lL~~CMh~G--~ki~~ 282 (339)
T KOG0280|consen 211 SGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA----KVGG--GVWRIKHHPEIFHRLLAACMHNG--AKILD 282 (339)
T ss_pred cceEEEecCCCCCceEEEeccccceeeeehhcccCccccC----cccc--ceEEEEecchhhhHHHHHHHhcC--ceEEE
Confidence 44555555533 799999999999999995 6665421 1112 7889988854 34455554555 78887
Q ss_pred CCCCceE-----EEEe-cCCCEEEEEEcCc--EEEEEE-CCCcEE-EEECCCC
Q 000744 1233 ISSKTAV-----GSFT-TGIDIQHLAVNSD--FIFTAT-KCGTIE-VWLKERV 1275 (1306)
Q Consensus 1233 ~~t~~~l-----~~l~-~~~~V~sla~spd--~Lasgs-~Dg~I~-IWd~~tg 1275 (1306)
.+.+... ...+ |++-++.-.|+.. +++|++ .|..|+ +|-.-++
T Consensus 283 ~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 283 SSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred ecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 7654322 1222 2223444445322 688876 566644 6765554
No 270
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.61 E-value=4.4e-06 Score=102.37 Aligned_cols=197 Identities=12% Similarity=-0.025 Sum_probs=116.4
Q ss_pred cEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCC-C--cEEEEEcCCCceeEEEeecCCCCeEEEEeCCcE
Q 000744 1057 TIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLD-K--TIRVWSIKPEEIHCLQVHNVKEAVHELTANAEI 1133 (1306)
Q Consensus 1057 ~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~D-g--tI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~ 1133 (1306)
.|.++|.... . .+.+..+...+.+..|+|||+.|+..+.+ + .|.+||+.+++...+.... +......
T Consensus 199 ~l~i~d~dG~--~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~--g~~~~~~----- 268 (448)
T PRK04792 199 QLMIADYDGY--N-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP--GINGAPR----- 268 (448)
T ss_pred EEEEEeCCCC--C-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC--CCcCCee-----
Confidence 5777787665 2 24455667789999999999988876543 3 5888898887543333222 2222333
Q ss_pred EEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCCEEEEEECCCc--EEEEECCCCceeEEecCcccccCCc-cEEEEE
Q 000744 1134 ACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGDKLYCGCSGYS--IQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLH 1210 (1306)
Q Consensus 1134 v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~Dg~--I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~ 1210 (1306)
++|||+.+ +++.+.+|. |++||+.+++.... ..+. ......
T Consensus 269 --wSPDG~~L---------------------------a~~~~~~g~~~Iy~~dl~tg~~~~l-------t~~~~~~~~p~ 312 (448)
T PRK04792 269 --FSPDGKKL---------------------------ALVLSKDGQPEIYVVDIATKALTRI-------TRHRAIDTEPS 312 (448)
T ss_pred --ECCCCCEE---------------------------EEEEeCCCCeEEEEEECCCCCeEEC-------ccCCCCccceE
Confidence 77777732 223444554 78889888765432 2222 456678
Q ss_pred EeCCcEEEE-EEecCC-CEEEEEECCCCceEEEEecCCCEEEEEEcCc--EEEEE-ECCC--cEEEEECCCCeEEEEEec
Q 000744 1211 MHNGLLFAG-GSSVDG-TAGKVFSISSKTAVGSFTTGIDIQHLAVNSD--FIFTA-TKCG--TIEVWLKERVTRVASVKA 1283 (1306)
Q Consensus 1211 ~s~~~~lla-s~s~Dg-~~I~IWD~~t~~~l~~l~~~~~V~sla~spd--~Lasg-s~Dg--~I~IWd~~tg~~l~~l~~ 1283 (1306)
|+|++..++ ++..++ ..|+++|+.+++..............+|+|| +|+.. ..++ .|.++|+.+++. ..+..
T Consensus 313 wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~-~~lt~ 391 (448)
T PRK04792 313 WHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM-QVLTS 391 (448)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe-EEccC
Confidence 987765443 332222 2577778887765432222223455789998 55444 3444 455578887764 33332
Q ss_pred ccCCCCCCCeEEEEEcCCCCccC
Q 000744 1284 NNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1284 ~~~~~~~~~V~slafSpdg~~La 1306 (1306)
. . ......|+|||++|+
T Consensus 392 ---~-~--~d~~ps~spdG~~I~ 408 (448)
T PRK04792 392 ---T-R--LDESPSVAPNGTMVI 408 (448)
T ss_pred ---C-C--CCCCceECCCCCEEE
Confidence 1 1 122447999999874
No 271
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.60 E-value=8.9e-07 Score=104.28 Aligned_cols=185 Identities=12% Similarity=0.044 Sum_probs=129.2
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCceeEEEeec----CCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEE
Q 000744 1088 SSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHN----VKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKS 1163 (1306)
Q Consensus 1088 pdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~----~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~s 1163 (1306)
|.+.+++..+.||.+||||...++.+ +.+. ..+..++..|. ...+.+ ..-|....++..
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~--~e~~p~~~~s~t~~~~~w~-----L~~~~s----------~~k~~~~~~~~~ 65 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQ--QEFAPIASLSGTCTYTKWG-----LSADYS----------PMKWLSLEKAKK 65 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceee--eeeccchhccCcceeEEEE-----EEeccc----------hHHHHhHHHHhh
Confidence 45679999999999999999987422 2221 11222232211 011110 000000001111
Q ss_pred EEEeCCEEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEE
Q 000744 1164 LVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSF 1242 (1306)
Q Consensus 1164 l~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l 1242 (1306)
.+-....++-|...|.|.+|++..|+....+.. .+|. .|+++.++++-..+-+++.|. .+..|+..+++.++.+
T Consensus 66 ~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st----~~h~~~v~~~~~~~~~~ciyS~~ad~-~v~~~~~~~~~~~~~~ 140 (541)
T KOG4547|consen 66 ASLDTSMLVLGTPQGSVLLYSVAGGEITAKLST----DKHYGNVNEILDAQRLGCIYSVGADL-KVVYILEKEKVIIRIW 140 (541)
T ss_pred ccCCceEEEeecCCccEEEEEecCCeEEEEEec----CCCCCcceeeecccccCceEecCCce-eEEEEecccceeeeee
Confidence 111122588899999999999999998887652 2566 899999986655555666687 7999999999999999
Q ss_pred ec-CCCEEEEEEcCc--EEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCC
Q 000744 1243 TT-GIDIQHLAVNSD--FIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVD 1301 (1306)
Q Consensus 1243 ~~-~~~V~sla~spd--~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpd 1301 (1306)
.. ...+.+++++|| ++++++ +.|++||+++++.+.+|.+ |.++|.++.|--+
T Consensus 141 ~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftg-----h~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 141 KEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTG-----HGSPVRTLSFTTL 195 (541)
T ss_pred ccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecC-----CCcceEEEEEEEe
Confidence 85 445999999999 888776 6799999999999999986 7789999999776
No 272
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=98.58 E-value=1.6e-06 Score=95.32 Aligned_cols=260 Identities=16% Similarity=0.190 Sum_probs=191.4
Q ss_pred HhChhhHHHhhcCCCCHHHHHHHHHHHHHHhhhcCCCcccccccccccchHHHHHHHhcCC-cHHHHHHHHHHHHHHhcc
Q 000744 487 INGLKPYVTCLCTSENLQECETAVLAIARLWKESKGDPGVHAYLLKPTIINGFAEILSASL-SREVLRTSVYILSELMVA 565 (1306)
Q Consensus 487 ~~~~~~~l~~Ll~s~~~~~~e~Av~~i~~L~~~~~~~~~~~~~i~~~~~I~~Lv~~L~~~~-~~~~~e~Av~~L~~L~s~ 565 (1306)
.+++.|++..||++.+....|.||=+|.|++-+++ .+|-.+.+.|++++++.+|.+++ +....+++.-.|.||+..
T Consensus 155 d~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~---~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRG 231 (526)
T COG5064 155 DAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSE---GCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRG 231 (526)
T ss_pred eCCchHHHHHHHcCchHHHHHHHHHHhccccCCch---hHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCC
Confidence 46788999999999999999999999999999887 44578899999999999999875 368899999999999542
Q ss_pred CccccccccccCCchHHHHHHHhcCh----HHHHHHHhccCC---CHH-HHhhCCchHHHHHHhhcCCccccchhcccCc
Q 000744 566 DESVGDILTSVDSDFDCLAALLKNGL----GEAAVLIYQLRP---AFA-QLSAHEFIPSLVQLVLNKTEEFDELQFVMEP 637 (1306)
Q Consensus 566 ~~~~~~~I~~~~~~i~~Lv~lLk~g~----~~Aa~aL~~L~~---~~~-~i~~~g~i~~Lv~ll~~g~~~~~~~~~~~~~ 637 (1306)
.. ---.-....-++|.|.+|+-+-. .+|-=||-.|+- -+. .+...|..+-||++|...+.+.
T Consensus 232 kn-P~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~i--------- 301 (526)
T COG5064 232 KN-PPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKI--------- 301 (526)
T ss_pred CC-CCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccc---------
Confidence 21 11111112357888999887643 688888888865 233 3556888888999999865221
Q ss_pred hHHHHHHHHHHHccCCCCCchhhhhHhhcCCCHHHHHhhcCChhHH--HHHHHHHHhhhhccchhHHHHHHhcccchhhh
Q 000744 638 KDAAIEMLEQILMGGDKKSRSITALSLISANGIPALIKCLDRVEVR--RSIVSILLCCMHADKSCKTLIAKRIELSHVLD 715 (1306)
Q Consensus 638 k~aa~~lL~~l~~~~~~~~~~~n~~~i~~~g~i~~Lv~~l~~~~~~--~~~~~~L~~~~~~~~~~r~~i~~~~~~~~l~~ 715 (1306)
..-|+-...+++||.|.-| ..|+..|+++++-.+|.+..+. .-|--.+.+..+.+..--.++.+..-+|||++
T Consensus 302 qtPalR~vGNIVTG~D~QT-----qviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~ 376 (526)
T COG5064 302 QTPALRSVGNIVTGSDDQT-----QVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIH 376 (526)
T ss_pred cCHHHHhhcCeeecCccce-----ehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHH
Confidence 1246667788999876555 5788999999999999444443 33444566666777777888889999999999
Q ss_pred hhhcCCchhHhHHHHHHHHHHhcc-hhhhHHHHHHHhhhcCCcchHHHHHHHh
Q 000744 716 LFHDGNDSVRGICINFLSELVLLN-RRTFSNQILQVIRDEGSFSTMHTFLVYL 767 (1306)
Q Consensus 716 ll~~g~~~~k~~a~~~L~~L~~~~-~~~~~~~~l~~i~~~g~~~~m~~ll~~l 767 (1306)
||.+..-+-|..|-=+.+++..-. ++. .+++-+...|++.++-.+|...
T Consensus 377 lls~ae~k~kKEACWAisNatsgg~~~P---D~iryLv~qG~IkpLc~~L~~~ 426 (526)
T COG5064 377 LLSSAEYKIKKEACWAISNATSGGLNRP---DIIRYLVSQGFIKPLCDLLDVV 426 (526)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCc---hHHHHHHHccchhHHHHHHhcc
Confidence 999887776555555555554221 222 4578888999999977777553
No 273
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.58 E-value=2.5e-05 Score=93.73 Aligned_cols=250 Identities=13% Similarity=0.099 Sum_probs=153.3
Q ss_pred cEEEEEeCCCcEEEEeCCCceEEcccC-CCCEEE-EEEeCCEEEEEECCCcEEEEeCCCCccceEEEEcccCccEE----
Q 000744 1009 KALMNLSSVNATELWHCNEVTELDSST-NGEVLS-LIHLKGRVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVT---- 1082 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~~~i~~~H-~~~V~s-l~fspd~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~---- 1082 (1306)
..++.++.||.+..||..+...+.... .+.+.+ .....+.++.++.||.+..||.++| +.+..+......+.
T Consensus 106 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG--~~~W~~~~~~~~~~~~~~ 183 (377)
T TIGR03300 106 GLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAATG--ERLWTYSRVTPALTLRGS 183 (377)
T ss_pred CEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECCCCeEEEEEcCCC--ceeeEEccCCCceeecCC
Confidence 667888889999999987654443221 222221 2234568888889999999999998 66666543322211
Q ss_pred -EEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCC---CC------e-EEEEe-CCcEEEEEcCCCeEEEEEecC
Q 000744 1083 -CLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVK---EA------V-HELTA-NAEIACFVSPATGVKVYNWSG 1150 (1306)
Q Consensus 1083 -sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~---~~------V-~sl~~-~~~~v~~s~dg~~I~i~~~~~ 1150 (1306)
+... .+..++.++.+|.+..+|..+++..-....... .. + .+..+ ++.++..+.+| .+..++...
T Consensus 184 ~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g-~l~a~d~~t 260 (377)
T TIGR03300 184 ASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQG-RVAALDLRS 260 (377)
T ss_pred CCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCC-EEEEEECCC
Confidence 1111 234778888899999999998862211111100 00 0 11112 33333334444 477777765
Q ss_pred CEEEeccC-CCeEEEEEeCCEEEEEECCCcEEEEECCCCceeEEecCcccccCCccEEEEEEeCCcEEEEEEecCCCEEE
Q 000744 1151 AIKHINFN-KHVKSLVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLLFAGGSSVDGTAGK 1229 (1306)
Q Consensus 1151 ~~~l~~~~-~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~s~Dg~~I~ 1229 (1306)
...+|... .........++++++++.||.++.+|..+++.+..+.. +.+. ...+....++ .++++ +.|| .++
T Consensus 261 G~~~W~~~~~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~---~~~~-~~ssp~i~g~-~l~~~-~~~G-~l~ 333 (377)
T TIGR03300 261 GRVLWKRDASSYQGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDE---LKYR-QLTAPAVVGG-YLVVG-DFEG-YLH 333 (377)
T ss_pred CcEEEeeccCCccCceEeCCEEEEECCCCeEEEEECCCCcEEEcccc---ccCC-ccccCEEECC-EEEEE-eCCC-EEE
Confidence 55556543 22334456678899999999999999999987754421 1111 1222233344 33333 3577 899
Q ss_pred EEECCCCceEEEEecCC-C-EEEEEEcCcEEEEEECCCcEEEE
Q 000744 1230 VFSISSKTAVGSFTTGI-D-IQHLAVNSDFIFTATKCGTIEVW 1270 (1306)
Q Consensus 1230 IWD~~t~~~l~~l~~~~-~-V~sla~spd~Lasgs~Dg~I~IW 1270 (1306)
+||..+++.+.+++.+. . ..+..+..+.|+.++.||+|+.|
T Consensus 334 ~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 334 WLSREDGSFVARLKTDGSGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred EEECCCCCEEEEEEcCCCccccCCEEECCEEEEEeCCceEEEe
Confidence 99999999999888433 3 34445555689999999999876
No 274
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=98.57 E-value=9.9e-07 Score=96.97 Aligned_cols=301 Identities=13% Similarity=0.130 Sum_probs=207.9
Q ss_pred HhChhhHHHhhc-CCCCHHHHHHHHHHHHHHhhhcCCCcccccccccccchHHHHHHHhcCCcHHHHHHHHHHHHHHhcc
Q 000744 487 INGLKPYVTCLC-TSENLQECETAVLAIARLWKESKGDPGVHAYLLKPTIINGFAEILSASLSREVLRTSVYILSELMVA 565 (1306)
Q Consensus 487 ~~~~~~~l~~Ll-~s~~~~~~e~Av~~i~~L~~~~~~~~~~~~~i~~~~~I~~Lv~~L~~~~~~~~~e~Av~~L~~L~s~ 565 (1306)
.+|..+..+.++ .....-.|-+|+=+|.|++....... ...+++|++|.|+.+|.++ +.+++|.|+-+|.|++--
T Consensus 112 daGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QT---kvVvd~~AVPlfiqlL~s~-~~~V~eQavWALGNiAGD 187 (526)
T COG5064 112 DAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQT---KVVVDAGAVPLFIQLLSST-EDDVREQAVWALGNIAGD 187 (526)
T ss_pred hccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccce---EEEEeCCchHHHHHHHcCc-hHHHHHHHHHHhccccCC
Confidence 456677777776 44555567789999999998776553 4667999999999999999 999999999999999666
Q ss_pred CccccccccccCCchHHHHHHHhcCh------HHHHHHHhccCC--CHH--HHhhCCchHHHHHHhhcCCccccchhccc
Q 000744 566 DESVGDILTSVDSDFDCLAALLKNGL------GEAAVLIYQLRP--AFA--QLSAHEFIPSLVQLVLNKTEEFDELQFVM 635 (1306)
Q Consensus 566 ~~~~~~~I~~~~~~i~~Lv~lLk~g~------~~Aa~aL~~L~~--~~~--~i~~~g~i~~Lv~ll~~g~~~~~~~~~~~ 635 (1306)
.+..|.-|.. .|+++||+.+|.+.. .+|.=+|-|||- |++ --.-..++|.|-.|+-.-+...
T Consensus 188 S~~~RD~vL~-~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~ev------- 259 (526)
T COG5064 188 SEGCRDYVLQ-CGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEV------- 259 (526)
T ss_pred chhHHHHHHh-cCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHH-------
Confidence 6667777776 999999999998753 799999999977 222 2223578999999988865221
Q ss_pred CchHHHHHHHHHHHccCCCCCchhhhhHhhcCCCHHHHHhhc--CChhHHHHHHHHHHhhhhccchhHHHHHHhcccchh
Q 000744 636 EPKDAAIEMLEQILMGGDKKSRSITALSLISANGIPALIKCL--DRVEVRRSIVSILLCCMHADKSCKTLIAKRIELSHV 713 (1306)
Q Consensus 636 ~~k~aa~~lL~~l~~~~~~~~~~~n~~~i~~~g~i~~Lv~~l--~~~~~~~~~~~~L~~~~~~~~~~r~~i~~~~~~~~l 713 (1306)
-..|...|+-|+.+. +|-..+|+..|.-+-||++| .+..-+.-|+...-+.+-.++.-...|.+.|.++.|
T Consensus 260 --lvDA~WAiSYlsDg~-----~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~ 332 (526)
T COG5064 260 --LVDACWAISYLSDGP-----NEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAF 332 (526)
T ss_pred --HHHHHHHHHHhccCc-----HHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHH
Confidence 124566667776554 57778899999999999999 555556667777777666777777888889999998
Q ss_pred hhhhhcCCchhHhHHHHHHHHHHhcchhhhHHHHHHHhhhcCCcchHHHHHHHhhcCCCcchhhHHHHHHhh--hcccCC
Q 000744 714 LDLFHDGNDSVRGICINFLSELVLLNRRTFSNQILQVIRDEGSFSTMHTFLVYLQMAPMEQQPATASLLLQL--DLLVEP 791 (1306)
Q Consensus 714 ~~ll~~g~~~~k~~a~~~L~~L~~~~~~~~~~~~l~~i~~~g~~~~m~~ll~~l~~~~~~~~~~~A~~l~~l--~~l~~~ 791 (1306)
.-||.+..++-|..|-=.++++ .+....-.+.+-+..-+|+ |+++|..+.-.-|..|-=...+. --+.-|
T Consensus 333 ~~lLs~~ke~irKEaCWTiSNI-----TAGnteqiqavid~nliPp---Li~lls~ae~k~kKEACWAisNatsgg~~~P 404 (526)
T COG5064 333 RSLLSSPKENIRKEACWTISNI-----TAGNTEQIQAVIDANLIPP---LIHLLSSAEYKIKKEACWAISNATSGGLNRP 404 (526)
T ss_pred HHHhcChhhhhhhhhheeeccc-----ccCCHHHHHHHHhcccchH---HHHHHHHHHHHHHHHHHHHHHhhhccccCCc
Confidence 8888776666655444444333 2333344555566666776 44444443333333332222221 122233
Q ss_pred ccc-cccHHHHHHHHHHHHhcCCC
Q 000744 792 RKM-SMYREEAVEALIEALRRKDF 814 (1306)
Q Consensus 792 ~~~-~~~reeai~~l~~~l~~~~~ 814 (1306)
... -....|.|.+|-..|...++
T Consensus 405 D~iryLv~qG~IkpLc~~L~~~dN 428 (526)
T COG5064 405 DIIRYLVSQGFIKPLCDLLDVVDN 428 (526)
T ss_pred hHHHHHHHccchhHHHHHHhccCc
Confidence 211 12357888888888888865
No 275
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.56 E-value=1.6e-08 Score=84.70 Aligned_cols=59 Identities=20% Similarity=0.420 Sum_probs=34.2
Q ss_pred CcccCcccccccCCcEE-cCCCCcccHHHHHHHHHcCCCCCCCCCCccCCCCCCCccHHHHHHH
Q 000744 342 KDFVCPITGQIFNDPVT-LETGQTYERKAIQEWLKRGNTTCPITRQPLCSNSLPKTNYVLKRLI 404 (1306)
Q Consensus 342 ~~~~CpIc~~l~~dPv~-~~cGhtfc~~cI~~~~~~~~~~CP~c~~~l~~~~l~~~N~~L~~li 404 (1306)
+-+.|++|.++|++||. ..|.|.||..||...+.. .||+|+.+....++. .|+.|.++|
T Consensus 6 ~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~-~NrqLd~~i 65 (65)
T PF14835_consen 6 ELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQ-INRQLDSMI 65 (65)
T ss_dssp HTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS-----HHHHHHH
T ss_pred HhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHH-hhhhhhccC
Confidence 56789999999999995 589999999999876543 499999999888885 899999886
No 276
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.54 E-value=3.8e-06 Score=91.21 Aligned_cols=215 Identities=11% Similarity=0.130 Sum_probs=140.5
Q ss_pred CcEEEEeCCCce-----EEcccCCCCEEEEEEeC-----C-EEEEEECCCcEEEEeCCCCccceEEEEcccCc------c
Q 000744 1018 NATELWHCNEVT-----ELDSSTNGEVLSLIHLK-----G-RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTR------A 1080 (1306)
Q Consensus 1018 g~I~IWd~~~~~-----~i~~~H~~~V~sl~fsp-----d-~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~------~ 1080 (1306)
|.+.+|++.... .+.......+..+.|.- + .++-+..+|.|.++..... .....+++-+. .
T Consensus 46 Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~--~ss~~L~~ls~~ki~~~~ 123 (339)
T KOG0280|consen 46 GKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDED--ESSVHLRGLSSKKISVVE 123 (339)
T ss_pred cceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccc--eeeeeecccchhhhhhee
Confidence 677888876421 22233355677777762 3 6777788899999987654 33344433221 2
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCC
Q 000744 1081 VTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKH 1160 (1306)
Q Consensus 1081 V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~ 1160 (1306)
..++.|++.+..++++-.+|.+.+-+.....++.++..+ .|.-.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk------------------------------------~He~E 167 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWK------------------------------------VHEFE 167 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccc------------------------------------cccee
Confidence 457789998888999988888885554443222211111 12223
Q ss_pred eEEEEEe---CCEEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEe-CCcEEEEEEecCCCEEEEEECCC
Q 000744 1161 VKSLVMT---GDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMH-NGLLFAGGSSVDGTAGKVFSISS 1235 (1306)
Q Consensus 1161 V~sl~~s---~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s-~~~~llas~s~Dg~~I~IWD~~t 1235 (1306)
.....|+ |+.+++|+.|+.+..||++..+ ..++.. .+-|. .|.+|.-+ |...++++|+.|. .|++||.++
T Consensus 168 ~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-~~i~~n---~kvH~~GV~SI~ss~~~~~~I~TGsYDe-~i~~~DtRn 242 (339)
T KOG0280|consen 168 AWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-TFIWHN---SKVHTSGVVSIYSSPPKPTYIATGSYDE-CIRVLDTRN 242 (339)
T ss_pred eeeeecccCCCceEEecCCCceEEEEEecCCc-ceeeec---ceeeecceEEEecCCCCCceEEEecccc-ceeeeehhc
Confidence 3333343 6689999999999999999433 223331 23456 88888887 6788999999999 899999985
Q ss_pred -CceEEEEecCCCEEEEEEcCc---EEEEEECCCcEEEEECCCC
Q 000744 1236 -KTAVGSFTTGIDIQHLAVNSD---FIFTATKCGTIEVWLKERV 1275 (1306)
Q Consensus 1236 -~~~l~~l~~~~~V~sla~spd---~Lasgs~Dg~I~IWd~~tg 1275 (1306)
++++..-.-.+.|+.+.++|. .++.++.-+-.+|-+.+.+
T Consensus 243 m~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~ 286 (339)
T KOG0280|consen 243 MGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDK 286 (339)
T ss_pred ccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEeccc
Confidence 777777666788999999997 3344443444677766543
No 277
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.53 E-value=6.6e-08 Score=76.38 Aligned_cols=39 Identities=38% Similarity=0.968 Sum_probs=36.5
Q ss_pred CcccccccCCcE-EcCCCCcccHHHHHHHHH-cCCCCCCCC
Q 000744 346 CPITGQIFNDPV-TLETGQTYERKAIQEWLK-RGNTTCPIT 384 (1306)
Q Consensus 346 CpIc~~l~~dPv-~~~cGhtfc~~cI~~~~~-~~~~~CP~c 384 (1306)
||||.+.+.+|+ +++|||+||+.||.+|++ .+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 899999999999999999 667789987
No 278
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.51 E-value=5.4e-08 Score=76.67 Aligned_cols=36 Identities=31% Similarity=0.781 Sum_probs=23.3
Q ss_pred CcccccccCC----cEEcCCCCcccHHHHHHHHHcC---CCCCC
Q 000744 346 CPITGQIFND----PVTLETGQTYERKAIQEWLKRG---NTTCP 382 (1306)
Q Consensus 346 CpIc~~l~~d----Pv~~~cGhtfc~~cI~~~~~~~---~~~CP 382 (1306)
||||.+ |.+ |++++|||+||+.|++++...+ ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 999 9999999999999999999854 44676
No 279
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=4e-07 Score=104.45 Aligned_cols=236 Identities=16% Similarity=0.158 Sum_probs=143.8
Q ss_pred ccccccccccccccc-----cEEEEEeCCCcEEEEeCCC---------ceEEcccCCCCEEEEEEeCCEEEEEECCCcEE
Q 000744 994 LRKLKKYSAVVTDIQ-----KALMNLSSVNATELWHCNE---------VTELDSSTNGEVLSLIHLKGRVLSSHSDGTIK 1059 (1306)
Q Consensus 994 l~~l~ghs~~V~~i~-----~~Lasgs~Dg~I~IWd~~~---------~~~i~~~H~~~V~sl~fspd~LaSgs~Dg~I~ 1059 (1306)
+..+.||...|..+. +-+++++.|++|++|.++. ++-+...|+.+|.++.|-.+.=..++.||-|.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giH 807 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIH 807 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcce
Confidence 567889988887665 7799999999999999862 45567889999999999987555567789999
Q ss_pred EEeCCCCccceEEEEcc--cCccEEEEEEcC--CCCEEEEE-eCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEE
Q 000744 1060 MWDSGKRVLRLIQEVRE--HTRAVTCLYVPS--SGDKLYSG-SLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIA 1134 (1306)
Q Consensus 1060 vWd~~t~~~~~i~~l~~--H~~~V~sl~fsp--dg~~L~Sg-s~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v 1134 (1306)
+||.--+ .++..... ..+.+..+..-+ +...++.| +...+|+++|.+..++.|.-...
T Consensus 808 lWDPFig--r~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVc--------------- 870 (1034)
T KOG4190|consen 808 LWDPFIG--RLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVC--------------- 870 (1034)
T ss_pred eeccccc--chhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEec---------------
Confidence 9998766 44432211 122233333333 34444444 78899999999987533221110
Q ss_pred EEEcCCCeEEEEEecCCEEEeccCCCeEEEEEe--CCEEEEEECCCcEEEEECCCCceeEEecCcccccCCccEEEEEEe
Q 000744 1135 CFVSPATGVKVYNWSGAIKHINFNKHVKSLVMT--GDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMH 1212 (1306)
Q Consensus 1135 ~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s--~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s 1212 (1306)
...| .+..+.++++. +++++.+-.+|+|.+.|.++|+.+..+.+- .. ....++-
T Consensus 871 --na~~----------------Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpm---ec--dllqlaa- 926 (1034)
T KOG4190|consen 871 --NAPG----------------PNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPM---EC--DLLQLAA- 926 (1034)
T ss_pred --cCCC----------------CchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcc---cc--hhhhhcC-
Confidence 0000 12233444443 448999999999999999999987754421 00 1111222
Q ss_pred CCcEEEEEEecCCCEEEE-EECCCCceEEEEecC-CCEEEEEEcCcEEEEEECCCcEEEEE
Q 000744 1213 NGLLFAGGSSVDGTAGKV-FSISSKTAVGSFTTG-IDIQHLAVNSDFIFTATKCGTIEVWL 1271 (1306)
Q Consensus 1213 ~~~~llas~s~Dg~~I~I-WD~~t~~~l~~l~~~-~~V~sla~spd~Lasgs~Dg~I~IWd 1271 (1306)
|...+++.+..|- ++.+ |..-++....+.+.. .+..-+.--..-++++...+.+.||.
T Consensus 927 psdq~L~~saldH-slaVnWhaldgimh~q~kpppepahflqsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 927 PSDQALAQSALDH-SLAVNWHALDGIMHLQDKPPPEPAHFLQSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred chhHHHHhhcccc-eeEeeehhcCCeeeeccCCCCcchhhhhccCceeEEeccCcEEEEEe
Confidence 4444555555576 7888 887766554444321 11110100011455555555666764
No 280
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.49 E-value=0.00016 Score=85.80 Aligned_cols=250 Identities=16% Similarity=0.175 Sum_probs=150.8
Q ss_pred EEEEECC----CcEEEEeC--CCCccceEEEEcccCccEEEEEEcCCCCEEEEEeC----CCcEEEEEcCCC--ceeEEE
Q 000744 1049 VLSSHSD----GTIKMWDS--GKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSL----DKTIRVWSIKPE--EIHCLQ 1116 (1306)
Q Consensus 1049 LaSgs~D----g~I~vWd~--~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~----DgtI~VWdi~~~--~~~~i~ 1116 (1306)
++.|+.+ +.|.+|++ .++....+..+. -......++++|++++|++... +|.|..|++... ++..+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 5677777 78999988 555444444432 3344567889999999999877 578999988864 455554
Q ss_pred eec-CCCCeEEEEe---CCcEEEEEcCCCeEEEEEecCC--EE----Eec-----------cCCCeEEEEEeCC--EEEE
Q 000744 1117 VHN-VKEAVHELTA---NAEIACFVSPATGVKVYNWSGA--IK----HIN-----------FNKHVKSLVMTGD--KLYC 1173 (1306)
Q Consensus 1117 ~~~-~~~~V~sl~~---~~~~v~~s~dg~~I~i~~~~~~--~~----l~~-----------~~~~V~sl~~s~d--~L~s 1173 (1306)
... .......+++ ...++.....+..+.++..+.. .. .+. ......++.++|+ ++++
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 443 3455566775 2334444445566777777632 11 121 1355789999977 5555
Q ss_pred EE-CCCcEEEEECCCCc--eeEEecCcccccCCccEEEEEEeCCcEEEEEEecCCCEEEEEECC--CCc--eEEEEec--
Q 000744 1174 GC-SGYSIQEVDLGNLT--STTFYAGTKKLLGKQTIHSLHMHNGLLFAGGSSVDGTAGKVFSIS--SKT--AVGSFTT-- 1244 (1306)
Q Consensus 1174 gs-~Dg~I~iwDl~~~~--~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~s~Dg~~I~IWD~~--t~~--~l~~l~~-- 1244 (1306)
.. ....|++|++.... .... . ...+.....-+.+.|+|++.++.......++|.+|++. ++. .+..+..
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~-~-~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~ 238 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPV-D-SIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLP 238 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEE-E-EEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCE
T ss_pred EecCCCEEEEEEEeCCCceEEEe-e-ccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecc
Confidence 44 35679999997754 3221 0 00111112568899997765554444455589999998 442 2233321
Q ss_pred -----CCCEEEEEEcCc--EEEEE-ECCCcEEEEECC--CCe--EEEEEecccCCCCCCCeEEEEEcCCCCccC
Q 000744 1245 -----GIDIQHLAVNSD--FIFTA-TKCGTIEVWLKE--RVT--RVASVKANNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1245 -----~~~V~sla~spd--~Lasg-s~Dg~I~IWd~~--tg~--~l~~l~~~~~~~~~~~V~slafSpdg~~La 1306 (1306)
......+.++|| +|+++ ..+++|.+|++. +|+ .+..+.. .....+.++|+|||++|+
T Consensus 239 ~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~-----~G~~Pr~~~~s~~g~~l~ 307 (345)
T PF10282_consen 239 EGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT-----GGKFPRHFAFSPDGRYLY 307 (345)
T ss_dssp TTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE-----SSSSEEEEEE-TTSSEEE
T ss_pred ccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC-----CCCCccEEEEeCCCCEEE
Confidence 225889999998 55554 467899999983 343 3444442 223589999999999874
No 281
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.49 E-value=4.5e-05 Score=84.97 Aligned_cols=217 Identities=15% Similarity=0.083 Sum_probs=132.4
Q ss_pred CCCcEEEEeCCCCccceEEEEccc--CccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCC
Q 000744 1054 SDGTIKMWDSGKRVLRLIQEVREH--TRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANA 1131 (1306)
Q Consensus 1054 ~Dg~I~vWd~~t~~~~~i~~l~~H--~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~ 1131 (1306)
.+|+|..||..+| +.+....-- .....+. ..+++..+++++.++.+..||..+++..-...........-+...+
T Consensus 1 ~~g~l~~~d~~tG--~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~ 77 (238)
T PF13360_consen 1 DDGTLSALDPRTG--KELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGG 77 (238)
T ss_dssp -TSEEEEEETTTT--EEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETT
T ss_pred CCCEEEEEECCCC--CEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeeccc
Confidence 3789999999999 677766421 1222211 2235678888899999999999998633222222111111122255
Q ss_pred cEEEEEcCCCeEEEEEecCCEEEecc-C--------CCeEEEEEeCCEEEEEECCCcEEEEECCCCceeEEecCcccccC
Q 000744 1132 EIACFVSPATGVKVYNWSGAIKHINF-N--------KHVKSLVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLG 1202 (1306)
Q Consensus 1132 ~~v~~s~dg~~I~i~~~~~~~~l~~~-~--------~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~g 1202 (1306)
.+++...++ .+..++......+|.. . .......+.++.++++..++.|..+|+++|+.+..+..... .+
T Consensus 78 ~v~v~~~~~-~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~-~~ 155 (238)
T PF13360_consen 78 RVYVGTSDG-SLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP-RG 155 (238)
T ss_dssp EEEEEETTS-EEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT--S
T ss_pred cccccccee-eeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC-CC
Confidence 555555555 5777775544445541 1 12334555688999999999999999999999877654221 11
Q ss_pred Ccc------E-EEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEecCCCEEE-EEEcCcEEEEEECCCcEEEEECCC
Q 000744 1203 KQT------I-HSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFTTGIDIQH-LAVNSDFIFTATKCGTIEVWLKER 1274 (1306)
Q Consensus 1203 h~~------I-~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~~~~V~s-la~spd~Lasgs~Dg~I~IWd~~t 1274 (1306)
... + ..+.+.++ .+.++. .++..+.+ |..+++.+.... ...+.. ...+.+.++.++.++.|..||+.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~-~v~~~~-~~g~~~~~-d~~tg~~~w~~~-~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDG-RVYVSS-GDGRVVAV-DLATGEKLWSKP-ISGIYSLPSVDGGTLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp S--EEEETTEEEEEECCTT-EEEEEC-CTSSEEEE-ETTTTEEEEEEC-SS-ECECEECCCTEEEEEETTTEEEEEETTT
T ss_pred CcceeeecccccceEEECC-EEEEEc-CCCeEEEE-ECCCCCEEEEec-CCCccCCceeeCCEEEEEeCCCEEEEEECCC
Confidence 001 1 23333445 444443 35544666 999998765444 333444 444555888888999999999999
Q ss_pred CeEEE
Q 000744 1275 VTRVA 1279 (1306)
Q Consensus 1275 g~~l~ 1279 (1306)
|+.+-
T Consensus 232 G~~~W 236 (238)
T PF13360_consen 232 GKVVW 236 (238)
T ss_dssp TEEEE
T ss_pred CCEEe
Confidence 98753
No 282
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=2.6e-05 Score=91.59 Aligned_cols=278 Identities=13% Similarity=0.123 Sum_probs=163.3
Q ss_pred cEEEEEeCCCcEEEEeCCCceEEcccCCCCEEEEEEeCC--EEEE-----EECC-----CcEEEEeCCCCccceEEEEcc
Q 000744 1009 KALMNLSSVNATELWHCNEVTELDSSTNGEVLSLIHLKG--RVLS-----SHSD-----GTIKMWDSGKRVLRLIQEVRE 1076 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~~~i~~~H~~~V~sl~fspd--~LaS-----gs~D-----g~I~vWd~~t~~~~~i~~l~~ 1076 (1306)
..+..-+.++.++|++......+.+.....++++.|+|- +|.+ -..| -.+++|+++++ .....++.
T Consensus 46 G~lfA~~~~~~v~i~~~~~~~~~lt~~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~--~~~s~~q~ 123 (566)
T KOG2315|consen 46 GRLFAYSDNQVVKVFEIATLKVVLCVELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETG--VQRSQIQK 123 (566)
T ss_pred CcEEEEEcCCeEEEEEccCCcEEEEeccceeeeeeecccccccccccccccccCCCCCCCceeeeeeccc--eehhheeh
Confidence 344444555889999987654444444448999999983 4432 1222 34669999986 44444443
Q ss_pred cCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEe-----CCcEEEEEcCC----CeEEEEE
Q 000744 1077 HTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTA-----NAEIACFVSPA----TGVKVYN 1147 (1306)
Q Consensus 1077 H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~-----~~~~v~~s~dg----~~I~i~~ 1147 (1306)
-...-|+..|+.|..+.+= -..+.+.+|++.+.+ .+...-+...|..+.+ ...++++.|.. ..+++|.
T Consensus 124 k~Q~~W~~qfs~dEsl~ar-lv~nev~f~~~~~f~--~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~ 200 (566)
T KOG2315|consen 124 KMQNGWVPQFSIDESLAAR-LVSNEVQFYDLGSFK--TIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYK 200 (566)
T ss_pred hhhcCcccccccchhhhhh-hhcceEEEEecCCcc--ceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEec
Confidence 3323378999988754332 123568999988743 2211113356666665 22344444432 2355555
Q ss_pred ec--CCEEEec----cCCCeEEEEEeCC---E--EEEEECCC---------cEEEEECCCCceeEEecCcccccCCccEE
Q 000744 1148 WS--GAIKHIN----FNKHVKSLVMTGD---K--LYCGCSGY---------SIQEVDLGNLTSTTFYAGTKKLLGKQTIH 1207 (1306)
Q Consensus 1148 ~~--~~~~l~~----~~~~V~sl~~s~d---~--L~sgs~Dg---------~I~iwDl~~~~~~~~~~~~~~l~gh~~I~ 1207 (1306)
.. +...... ....-..+.|++. . |++..-|. +++++++....+... +....+|.
T Consensus 201 ~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~------L~k~GPVh 274 (566)
T KOG2315|consen 201 YPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVP------LLKEGPVH 274 (566)
T ss_pred cccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEe------cCCCCCce
Confidence 44 1111111 1112223445422 2 23333333 678888774343332 22222999
Q ss_pred EEEEeCCc-EEEEEEecCCCEEEEEECCCCceEEEEecCCCEEEEEEcCc--EEEEEECC---CcEEEEECCCCeEEEEE
Q 000744 1208 SLHMHNGL-LFAGGSSVDGTAGKVFSISSKTAVGSFTTGIDIQHLAVNSD--FIFTATKC---GTIEVWLKERVTRVASV 1281 (1306)
Q Consensus 1208 sl~~s~~~-~llas~s~Dg~~I~IWD~~t~~~l~~l~~~~~V~sla~spd--~Lasgs~D---g~I~IWd~~tg~~l~~l 1281 (1306)
++.|++++ .|.+..+.--..+.|||++ +..+..|. .++=+++-|+|. +|+.+|-+ |.|-|||+.+.+++.++
T Consensus 275 dv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~-egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~ 352 (566)
T KOG2315|consen 275 DVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP-EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKF 352 (566)
T ss_pred EEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC-CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccc
Confidence 99999655 4444443333379999976 55565553 455678889987 66666644 89999999999999888
Q ss_pred ecccCCCCCCCeEEEEEcCCCCccC
Q 000744 1282 KANNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1282 ~~~~~~~~~~~V~slafSpdg~~La 1306 (1306)
.. ..-+-+.|+|||++|.
T Consensus 353 ~a-------~~tt~~eW~PdGe~fl 370 (566)
T KOG2315|consen 353 KA-------ANTTVFEWSPDGEYFL 370 (566)
T ss_pred cc-------CCceEEEEcCCCcEEE
Confidence 75 2446789999999873
No 283
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=7e-08 Score=101.80 Aligned_cols=58 Identities=21% Similarity=0.473 Sum_probs=50.6
Q ss_pred CCCcccCcccccccCCcEEcCCCCcccHHHHHHHHHc--CCCCCCCCCCccCCCCCCCccH
Q 000744 340 PPKDFVCPITGQIFNDPVTLETGQTYERKAIQEWLKR--GNTTCPITRQPLCSNSLPKTNY 398 (1306)
Q Consensus 340 ~~~~~~CpIc~~l~~dPv~~~cGhtfc~~cI~~~~~~--~~~~CP~c~~~l~~~~l~~~N~ 398 (1306)
.-..|-|.||++.-+|||++.|||-||-.||.+|++. +...||+|+..++.+.++ |=+
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vv-PlY 103 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVV-PLY 103 (230)
T ss_pred CCCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEE-eee
Confidence 3478999999999999999999999999999999983 345799999999888885 543
No 284
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=1e-07 Score=95.95 Aligned_cols=53 Identities=23% Similarity=0.539 Sum_probs=45.3
Q ss_pred CCcccCcccccccCC--cEEcCCCCcccHHHHHHHHHcCCCCCCCCCCccCCCCCC
Q 000744 341 PKDFVCPITGQIFND--PVTLETGQTYERKAIQEWLKRGNTTCPITRQPLCSNSLP 394 (1306)
Q Consensus 341 ~~~~~CpIc~~l~~d--Pv~~~cGhtfc~~cI~~~~~~~~~~CP~c~~~l~~~~l~ 394 (1306)
..-+.||||++-+.+ ||.++|||-||+.||.+.++.+ ..||.|++.+.+++++
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~-~~CP~C~kkIt~k~~~ 183 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNT-NKCPTCRKKITHKQFH 183 (187)
T ss_pred ccccCCCceecchhhccccccccchhHHHHHHHHHHHhC-CCCCCcccccchhhhe
Confidence 345999999998876 5678999999999999999984 4699999998887764
No 285
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.45 E-value=6e-05 Score=91.79 Aligned_cols=235 Identities=10% Similarity=-0.085 Sum_probs=129.7
Q ss_pred CcEEEEeCCCc-eEEcccCCCCEEEEEEeCC--E---EEEEECCC--cEEEEeCCCCccceEEEEcccCccEEEEEEcCC
Q 000744 1018 NATELWHCNEV-TELDSSTNGEVLSLIHLKG--R---VLSSHSDG--TIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSS 1089 (1306)
Q Consensus 1018 g~I~IWd~~~~-~~i~~~H~~~V~sl~fspd--~---LaSgs~Dg--~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspd 1089 (1306)
+.|.+.|..+. ....+.+...+.+-.|+|| . +++...+| .|.+.++.++....+..+. +......|+||
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~---g~~~~p~wSPD 241 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQ---GNQLMPTFSPR 241 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCC---CCccceEECCC
Confidence 35666666542 2223345556777899997 3 33554444 5777788887444444443 34556899999
Q ss_pred CCEEEEEeC-CC----cEEEEEcCCCc-eeEEEeecC-CCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeE
Q 000744 1090 GDKLYSGSL-DK----TIRVWSIKPEE-IHCLQVHNV-KEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVK 1162 (1306)
Q Consensus 1090 g~~L~Sgs~-Dg----tI~VWdi~~~~-~~~i~~~~~-~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~ 1162 (1306)
|+.|+..+. +| .+..|++..+. ....+.... ....... .++|||+
T Consensus 242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p-------~wSPDG~--------------------- 293 (428)
T PRK01029 242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNP-------SFSPDGT--------------------- 293 (428)
T ss_pred CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCe-------EECCCCC---------------------
Confidence 988876543 23 34446665431 011111110 0111222 3667766
Q ss_pred EEEEeCCEEEEEE-CCCc--EEEEECCC-CceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCC--CEEEEEECCC
Q 000744 1163 SLVMTGDKLYCGC-SGYS--IQEVDLGN-LTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDG--TAGKVFSISS 1235 (1306)
Q Consensus 1163 sl~~s~d~L~sgs-~Dg~--I~iwDl~~-~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg--~~I~IWD~~t 1235 (1306)
.|+..+ .+|. |+++++.. +.....+ ..+. .+....|+|++..++..+.++ ..|.+||+.+
T Consensus 294 -------~Laf~s~~~g~~~ly~~~~~~~g~~~~~l------t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~ 360 (428)
T PRK01029 294 -------RLVFVSNKDGRPRIYIMQIDPEGQSPRLL------TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT 360 (428)
T ss_pred -------EEEEEECCCCCceEEEEECcccccceEEe------ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence 333333 3454 44444432 2222211 1222 556788998776555433332 2699999998
Q ss_pred CceEEEEecCCCEEEEEEcCc--EEE-EEEC--CCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCC
Q 000744 1236 KTAVGSFTTGIDIQHLAVNSD--FIF-TATK--CGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDG 1302 (1306)
Q Consensus 1236 ~~~l~~l~~~~~V~sla~spd--~La-sgs~--Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg 1302 (1306)
++......+...+....|+|| +|+ ++.. ++.|++||+.+++...... ..+.+...+|+|-.
T Consensus 361 g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~------~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 361 GRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI------GSGEKRFPSWGAFP 426 (428)
T ss_pred CCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec------CCCcccCceecCCC
Confidence 876443333345788999998 444 4333 3578899998876544333 22356677888754
No 286
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.45 E-value=8.1e-05 Score=89.96 Aligned_cols=256 Identities=9% Similarity=0.025 Sum_probs=156.0
Q ss_pred cEEEEEeCCCcEEEEeCCCceEEcccCCC------------CE-EEEEEeCCEEEEEECCCcEEEEeCCCCccceEEEEc
Q 000744 1009 KALMNLSSVNATELWHCNEVTELDSSTNG------------EV-LSLIHLKGRVLSSHSDGTIKMWDSGKRVLRLIQEVR 1075 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~~~i~~~H~~------------~V-~sl~fspd~LaSgs~Dg~I~vWd~~t~~~~~i~~l~ 1075 (1306)
..++.++.+|.+.-+|..+...+...... .+ ..+....+.++.++.+|.+..+|.++| +.+.+..
T Consensus 70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG--~~~W~~~ 147 (394)
T PRK11138 70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDG--EVAWQTK 147 (394)
T ss_pred CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCC--CCccccc
Confidence 56777778888888888764443321100 11 123455678889999999999999999 6666654
Q ss_pred ccCccEEE-EEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecC--------CCCeEEEEeCCcEEEEEcCCCeEEEE
Q 000744 1076 EHTRAVTC-LYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNV--------KEAVHELTANAEIACFVSPATGVKVY 1146 (1306)
Q Consensus 1076 ~H~~~V~s-l~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~--------~~~V~sl~~~~~~v~~s~dg~~I~i~ 1146 (1306)
... .+.+ -.. .+..++.++.+|.+.-+|..+++..-...... ..++ ..++.++....+|. +...
T Consensus 148 ~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~---v~~~~v~~~~~~g~-v~a~ 220 (394)
T PRK11138 148 VAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPA---TAFGGAIVGGDNGR-VSAV 220 (394)
T ss_pred CCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCE---EECCEEEEEcCCCE-EEEE
Confidence 332 2221 111 24567778889999999999986222111110 1111 11233333333443 5444
Q ss_pred EecCCEEEeccC--C------------CeEEEEEeCCEEEEEECCCcEEEEECCCCceeEEecCcccccCCccEEEEEEe
Q 000744 1147 NWSGAIKHINFN--K------------HVKSLVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMH 1212 (1306)
Q Consensus 1147 ~~~~~~~l~~~~--~------------~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s 1212 (1306)
+......+|... . ...+-.+.++.+++++.+|.+..+|..+|+.+..... + ....+...
T Consensus 221 d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~-----~--~~~~~~~~ 293 (394)
T PRK11138 221 LMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY-----G--SVNDFAVD 293 (394)
T ss_pred EccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC-----C--CccCcEEE
Confidence 544333344321 0 0112224467888889999999999999987654321 1 11223444
Q ss_pred CCcEEEEEEecCCCEEEEEECCCCceEEEEec--CCCEEEEEEcCcEEEEEECCCcEEEEECCCCeEEEEEec
Q 000744 1213 NGLLFAGGSSVDGTAGKVFSISSKTAVGSFTT--GIDIQHLAVNSDFIFTATKCGTIEVWLKERVTRVASVKA 1283 (1306)
Q Consensus 1213 ~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~--~~~V~sla~spd~Lasgs~Dg~I~IWd~~tg~~l~~l~~ 1283 (1306)
++..|+++ .|+ .+..+|..+++.+..... +....+..+..++++.++.||.|++.|..+|+.+.....
T Consensus 294 ~~~vy~~~--~~g-~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~ 363 (394)
T PRK11138 294 GGRIYLVD--QND-RVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGRFVAQQKV 363 (394)
T ss_pred CCEEEEEc--CCC-eEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence 55555544 366 799999999987665432 222344445566899999999999999999998887763
No 287
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.45 E-value=8.8e-05 Score=99.29 Aligned_cols=241 Identities=12% Similarity=0.045 Sum_probs=143.1
Q ss_pred cEEEEEeCCCcEEEEeCCCceEEcccC---------------CCCEEEEEEeC--CEEEEEE-CCCcEEEEeCCCCccce
Q 000744 1009 KALMNLSSVNATELWHCNEVTELDSST---------------NGEVLSLIHLK--GRVLSSH-SDGTIKMWDSGKRVLRL 1070 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~~~i~~~H---------------~~~V~sl~fsp--d~LaSgs-~Dg~I~vWd~~t~~~~~ 1070 (1306)
.++++-+..+.|.+||..+......+- -.....|++++ +.|+.+. .++.|+++|..++ .
T Consensus 581 ~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~---~ 657 (1057)
T PLN02919 581 RLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNE---T 657 (1057)
T ss_pred eEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCC---E
Confidence 577777888999999987543222111 12347788886 3555554 4578999999876 2
Q ss_pred EEEEccc-----------------CccEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCc
Q 000744 1071 IQEVREH-----------------TRAVTCLYVPS-SGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAE 1132 (1306)
Q Consensus 1071 i~~l~~H-----------------~~~V~sl~fsp-dg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~ 1132 (1306)
+.++.+- -..-+.++|+| ++..+++.+.++.|++||..++....+.
T Consensus 658 V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~---------------- 721 (1057)
T PLN02919 658 VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFS---------------- 721 (1057)
T ss_pred EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEe----------------
Confidence 4443210 01236799999 5667777788899999998876322111
Q ss_pred EEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCC--EE-EEEECCCcEEEEECCCCceeEEecCcc-------ccc-
Q 000744 1133 IACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGD--KL-YCGCSGYSIQEVDLGNLTSTTFYAGTK-------KLL- 1201 (1306)
Q Consensus 1133 ~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d--~L-~sgs~Dg~I~iwDl~~~~~~~~~~~~~-------~l~- 1201 (1306)
.+|... ..++.......-.....|+++++ ++ ++-+.++.|++||+.++.......+.. .+.
T Consensus 722 -----G~G~~~---~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~ 793 (1057)
T PLN02919 722 -----GDGYER---NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGD 793 (1057)
T ss_pred -----cCCccc---cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccC
Confidence 111100 00000000001133556777754 34 455567889999988765322111000 000
Q ss_pred --C------CccEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEecC--------------CCEEEEEEcCc--E
Q 000744 1202 --G------KQTIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFTTG--------------IDIQHLAVNSD--F 1257 (1306)
Q Consensus 1202 --g------h~~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~~--------------~~V~sla~spd--~ 1257 (1306)
+ ......+++++++.+.++...++ .|++||..++......... .....|+++++ .
T Consensus 794 ~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~-rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~l 872 (1057)
T PLN02919 794 HDGVGSEVLLQHPLGVLCAKDGQIYVADSYNH-KIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRL 872 (1057)
T ss_pred CCCchhhhhccCCceeeEeCCCcEEEEECCCC-EEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCE
Confidence 0 01235788887665555554455 8999999887665433211 13678999988 7
Q ss_pred EEEEECCCcEEEEECCCCeE
Q 000744 1258 IFTATKCGTIEVWLKERVTR 1277 (1306)
Q Consensus 1258 Lasgs~Dg~I~IWd~~tg~~ 1277 (1306)
+++-+.++.|++||+.+++.
T Consensus 873 yVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 873 FVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EEEECCCCEEEEEECCCCcc
Confidence 77778899999999998865
No 288
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.44 E-value=4.2e-06 Score=90.88 Aligned_cols=235 Identities=10% Similarity=0.216 Sum_probs=153.5
Q ss_pred CCCEEEEEEeC--CEEEEEECCCcEEEEeCCCCc---cceEEEEcccC------------ccEEEEEEcCCC--CEEEEE
Q 000744 1036 NGEVLSLIHLK--GRVLSSHSDGTIKMWDSGKRV---LRLIQEVREHT------------RAVTCLYVPSSG--DKLYSG 1096 (1306)
Q Consensus 1036 ~~~V~sl~fsp--d~LaSgs~Dg~I~vWd~~t~~---~~~i~~l~~H~------------~~V~sl~fspdg--~~L~Sg 1096 (1306)
...|+++.|.. +++++|...|.|.+|.-.... .+....|++|. ..|..+.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 45688898875 599999999999999875432 23445567775 357888887654 356677
Q ss_pred eCCCcEEEEEcCCCceeEE------------------------------------------EeecCCCCeEEEEe-CCcE
Q 000744 1097 SLDKTIRVWSIKPEEIHCL------------------------------------------QVHNVKEAVHELTA-NAEI 1133 (1306)
Q Consensus 1097 s~DgtI~VWdi~~~~~~~i------------------------------------------~~~~~~~~V~sl~~-~~~~ 1133 (1306)
+.|++|++|.+....++.+ ....|...|.++.| ++.-
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 8899999999865311110 00113445666776 4455
Q ss_pred EEEEcCCCeEEEEEec---CCEEEec---c-----CCCeEEEEEeCC---EEEEEECCCcEEEEECCCCce----eEEec
Q 000744 1134 ACFVSPATGVKVYNWS---GAIKHIN---F-----NKHVKSLVMTGD---KLYCGCSGYSIQEVDLGNLTS----TTFYA 1195 (1306)
Q Consensus 1134 v~~s~dg~~I~i~~~~---~~~~l~~---~-----~~~V~sl~~s~d---~L~sgs~Dg~I~iwDl~~~~~----~~~~~ 1195 (1306)
...+.|.-.|.+|..+ +...+.+ | ..-|++..|+|. .+.-.+..|.|++-|++.... ...|.
T Consensus 186 t~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe 265 (460)
T COG5170 186 TLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFE 265 (460)
T ss_pred eeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhh
Confidence 5567777777788766 3333332 1 245788888875 466677789999999984321 11111
Q ss_pred ----Cc--ccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCC-CceEEEEecC-------------CCE---EEE
Q 000744 1196 ----GT--KKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISS-KTAVGSFTTG-------------IDI---QHL 1251 (1306)
Q Consensus 1196 ----~~--~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t-~~~l~~l~~~-------------~~V---~sl 1251 (1306)
+. .-+.+-. .|..+.|++++.++.+- |-.+++|||++. ..++.+++-| ..| ..+
T Consensus 266 ~~~D~v~~~ff~eivsSISD~kFs~ngryIlsR--dyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFei 343 (460)
T COG5170 266 LTIDGVDVDFFEEIVSSISDFKFSDNGRYILSR--DYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEI 343 (460)
T ss_pred hccCcccchhHHHHhhhhcceEEcCCCcEEEEe--ccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEE
Confidence 00 0111112 67888999999998886 555899999976 5677777521 112 457
Q ss_pred EEcCc--EEEEEECCCcEEEEEC
Q 000744 1252 AVNSD--FIFTATKCGTIEVWLK 1272 (1306)
Q Consensus 1252 a~spd--~Lasgs~Dg~I~IWd~ 1272 (1306)
.|++| .+.+|+..+..-||-.
T Consensus 344 sfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 344 SFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred EecCCcccccccccccceeeecc
Confidence 78877 8888888877777763
No 289
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.41 E-value=1.9e-07 Score=101.59 Aligned_cols=48 Identities=27% Similarity=0.535 Sum_probs=41.0
Q ss_pred CCcccCcccccccCCc--------EEcCCCCcccHHHHHHHHHcCCCCCCCCCCccC
Q 000744 341 PKDFVCPITGQIFNDP--------VTLETGQTYERKAIQEWLKRGNTTCPITRQPLC 389 (1306)
Q Consensus 341 ~~~~~CpIc~~l~~dP--------v~~~cGhtfc~~cI~~~~~~~~~~CP~c~~~l~ 389 (1306)
.++..||||++.+.+| ++++|||.||+.||.+|++. +.+||+||..+.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence 4578999999987764 56789999999999999986 678999998765
No 290
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.40 E-value=9.7e-07 Score=113.79 Aligned_cols=212 Identities=12% Similarity=0.115 Sum_probs=147.0
Q ss_pred EECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc-eeEEEeecCCCCeEEEEe-
Q 000744 1052 SHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEE-IHCLQVHNVKEAVHELTA- 1129 (1306)
Q Consensus 1052 gs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~-~~~i~~~~~~~~V~sl~~- 1129 (1306)
...++...-|..+.+ -..++.|-..|.++.-+|...+-+||+.||.|++|....+. +.+.++... ..|+.+.|
T Consensus 2186 ~n~~~~~~tq~~~~~----~~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~ 2260 (2439)
T KOG1064|consen 2186 SNLPWLGSTQTSRGA----SVMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFN 2260 (2439)
T ss_pred ccCCccccceecccc----eeEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhc
Confidence 334555555655443 12334456678888889988999999999999999998876 555555554 77777775
Q ss_pred --CCcEEEEEcCCCeEEEEEecCCEEE--eccCCCeEEEEEeCCEEEEEE---CCCcEEEEECCCCceeEEecCcccccC
Q 000744 1130 --NAEIACFVSPATGVKVYNWSGAIKH--INFNKHVKSLVMTGDKLYCGC---SGYSIQEVDLGNLTSTTFYAGTKKLLG 1202 (1306)
Q Consensus 1130 --~~~~v~~s~dg~~I~i~~~~~~~~l--~~~~~~V~sl~~s~d~L~sgs---~Dg~I~iwDl~~~~~~~~~~~~~~l~g 1202 (1306)
++.+.....||. +.+|..+....+ ..|+...+.+.|-+..+++.+ .++.+.+||..-.....-. + ..
T Consensus 2261 ~qGnk~~i~d~dg~-l~l~q~~pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v--~---~~ 2334 (2439)
T KOG1064|consen 2261 HQGNKFGIVDGDGD-LSLWQASPKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLV--H---TC 2334 (2439)
T ss_pred ccCCceeeeccCCc-eeecccCCcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCccccee--e---ee
Confidence 233333333333 555555533222 136777777777776666654 4688999996532211100 0 35
Q ss_pred Cc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEecCCCEEEEEEc-CcEEEEEECCCcEEEEECCCCeEEEE
Q 000744 1203 KQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFTTGIDIQHLAVN-SDFIFTATKCGTIEVWLKERVTRVAS 1280 (1306)
Q Consensus 1203 h~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~~~~V~sla~s-pd~Lasgs~Dg~I~IWd~~tg~~l~~ 1280 (1306)
|. .++++++-|...++.+|+.+| .|++||++..+..++++. ++ .+++++|+..|.|+||++..-..+++
T Consensus 2335 H~~gaT~l~~~P~~qllisggr~G-~v~l~D~rqrql~h~~~~--------~~~~~~f~~~ss~g~ikIw~~s~~~ll~~ 2405 (2439)
T KOG1064|consen 2335 HDGGATVLAYAPKHQLLISGGRKG-EVCLFDIRQRQLRHTFQA--------LDTREYFVTGSSEGNIKIWRLSEFGLLHT 2405 (2439)
T ss_pred cCCCceEEEEcCcceEEEecCCcC-cEEEeehHHHHHHHHhhh--------hhhhheeeccCcccceEEEEccccchhhc
Confidence 66 899999999999999999998 899999998887777664 33 23999999999999999998888887
Q ss_pred Eec
Q 000744 1281 VKA 1283 (1306)
Q Consensus 1281 l~~ 1283 (1306)
++.
T Consensus 2406 ~p~ 2408 (2439)
T KOG1064|consen 2406 FPS 2408 (2439)
T ss_pred Cch
Confidence 763
No 291
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.39 E-value=0.00078 Score=76.12 Aligned_cols=279 Identities=10% Similarity=0.079 Sum_probs=165.8
Q ss_pred CCcEEEEeCCCc-----eEEcccCCCCEEEEEEeCC--EEEEEECC---CcEEEEeCCC--CccceEEEEcccCccEEEE
Q 000744 1017 VNATELWHCNEV-----TELDSSTNGEVLSLIHLKG--RVLSSHSD---GTIKMWDSGK--RVLRLIQEVREHTRAVTCL 1084 (1306)
Q Consensus 1017 Dg~I~IWd~~~~-----~~i~~~H~~~V~sl~fspd--~LaSgs~D---g~I~vWd~~t--~~~~~i~~l~~H~~~V~sl 1084 (1306)
++-|.+|++.+. ......+.+.++-|+|+|+ .|+++..+ |.|-.|.++. |....+.....-..+-+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 577999998731 1123456788899999996 68887654 7788777764 5433443333333344889
Q ss_pred EEcCCCCEEEEEeC-CCcEEEEEcCC-Cc-eeEEEeecCCCCeEEEE---eCCcEEEEEcCCCeEEEEEecCC-EEEe--
Q 000744 1085 YVPSSGDKLYSGSL-DKTIRVWSIKP-EE-IHCLQVHNVKEAVHELT---ANAEIACFVSPATGVKVYNWSGA-IKHI-- 1155 (1306)
Q Consensus 1085 ~fspdg~~L~Sgs~-DgtI~VWdi~~-~~-~~~i~~~~~~~~V~sl~---~~~~~v~~s~dg~~I~i~~~~~~-~~l~-- 1155 (1306)
+++++|++++++.. .|.|.|+-++. |. ...+....|.+....-. -+.+.+-+.|+|+.+.+.+.... +.++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 99999999999886 47899999866 43 33334444444310000 01233346666665555544421 1111
Q ss_pred -------------ccCCCeEEEEEeCC--EE-EEEECCCcEEEEECCCC-ceeEEecCcc----cccCCccEEEEEEeCC
Q 000744 1156 -------------NFNKHVKSLVMTGD--KL-YCGCSGYSIQEVDLGNL-TSTTFYAGTK----KLLGKQTIHSLHMHNG 1214 (1306)
Q Consensus 1156 -------------~~~~~V~sl~~s~d--~L-~sgs~Dg~I~iwDl~~~-~~~~~~~~~~----~l~gh~~I~sl~~s~~ 1214 (1306)
........|.|+|+ +. +++--+++|-+|..... ..+..+.... .+.+..+...|.++++
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence 23567889999987 33 34455899999998873 2222222111 2233337778888888
Q ss_pred cEEEEEEecCCCEEEEEECCCC-ceEEEEe----cCCCEEEEEEcCc--EEEEEE-CCCcEEEEECC--CCeEEEEEecc
Q 000744 1215 LLFAGGSSVDGTAGKVFSISSK-TAVGSFT----TGIDIQHLAVNSD--FIFTAT-KCGTIEVWLKE--RVTRVASVKAN 1284 (1306)
Q Consensus 1215 ~~llas~s~Dg~~I~IWD~~t~-~~l~~l~----~~~~V~sla~spd--~Lasgs-~Dg~I~IWd~~--tg~~l~~l~~~ 1284 (1306)
+.|+..+..--..|-+|.+... ..+..+. +......+.|+++ +|+++. .+..|.+|.++ +|..-....
T Consensus 255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~-- 332 (346)
T COG2706 255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGR-- 332 (346)
T ss_pred CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEeccc--
Confidence 8888776433337888877542 2233222 2333678888876 666655 44678888664 554433332
Q ss_pred cCCCCCCCeEEEEEc
Q 000744 1285 NSGGGHAKITCLGTG 1299 (1306)
Q Consensus 1285 ~~~~~~~~V~slafS 1299 (1306)
...-....||.|.
T Consensus 333 --~~~~p~Pvcv~f~ 345 (346)
T COG2706 333 --YAVVPEPVCVKFL 345 (346)
T ss_pred --ccCCCCcEEEEEc
Confidence 1122455677775
No 292
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=5.9e-07 Score=103.12 Aligned_cols=175 Identities=19% Similarity=0.191 Sum_probs=123.9
Q ss_pred eEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc--e---eEEEeecCCCCeEEEEeCCcEEEEEcCCCeEE
Q 000744 1070 LIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEE--I---HCLQVHNVKEAVHELTANAEIACFVSPATGVK 1144 (1306)
Q Consensus 1070 ~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~--~---~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~ 1144 (1306)
.+..+.||+..|..++--.+.+-+++++.|++|++|.++... . .|..++
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY-------------------------- 780 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTY-------------------------- 780 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEh--------------------------
Confidence 456678999999988776778899999999999999998742 0 111111
Q ss_pred EEEecCCEEEeccCCCeEEEEEeCCEEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEec
Q 000744 1145 VYNWSGAIKHINFNKHVKSLVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSV 1223 (1306)
Q Consensus 1145 i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~ 1223 (1306)
..|+.+|.++.|-.+.-...+.||.|++||.--+..+.......+ .+.. .|.++.--+...++++++.
T Consensus 781 ----------~aHkk~i~~igfL~~lr~i~ScD~giHlWDPFigr~Laq~~dapk-~~a~~~ikcl~nv~~~iliAgcsa 849 (1034)
T KOG4190|consen 781 ----------QAHKKPIHDIGFLADLRSIASCDGGIHLWDPFIGRLLAQMEDAPK-EGAGGNIKCLENVDRHILIAGCSA 849 (1034)
T ss_pred ----------hhccCcccceeeeeccceeeeccCcceeecccccchhHhhhcCcc-cCCCceeEecccCcchheeeeccc
Confidence 125666666666655445567799999999887776553322111 1111 4444433355667777666
Q ss_pred CCCEEEEEECCCCceEEEEec------CCCEEEEEEcCc--EEEEEECCCcEEEEECCCCeEEEEEe
Q 000744 1224 DGTAGKVFSISSKTAVGSFTT------GIDIQHLAVNSD--FIFTATKCGTIEVWLKERVTRVASVK 1282 (1306)
Q Consensus 1224 Dg~~I~IWD~~t~~~l~~l~~------~~~V~sla~spd--~Lasgs~Dg~I~IWd~~tg~~l~~l~ 1282 (1306)
.. +|+++|.+++..+..++- +.-+.++++.+. +++.|-.+|.|-+.|.++|+.+..+.
T Consensus 850 eS-TVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswr 915 (1034)
T KOG4190|consen 850 ES-TVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWR 915 (1034)
T ss_pred hh-hheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCC
Confidence 76 899999999887777762 233788888765 99999999999999999999888654
No 293
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.38 E-value=0.00018 Score=84.00 Aligned_cols=232 Identities=14% Similarity=0.147 Sum_probs=134.4
Q ss_pred CcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeC----------CCcEEEEEcCCCceeEEEeecCCCCeE
Q 000744 1056 GTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSL----------DKTIRVWSIKPEEIHCLQVHNVKEAVH 1125 (1306)
Q Consensus 1056 g~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~----------DgtI~VWdi~~~~~~~i~~~~~~~~V~ 1125 (1306)
|+|.+.|..++ +.+.++..-..+- .+ ++|||+.++.+.. +..|.|||..+.+ .+..........
T Consensus 27 ~~v~ViD~~~~--~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~--~~~~i~~p~~p~ 100 (352)
T TIGR02658 27 TQVYTIDGEAG--RVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL--PIADIELPEGPR 100 (352)
T ss_pred ceEEEEECCCC--EEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc--EEeEEccCCCch
Confidence 89999999998 7777776443333 24 9999998887765 7899999999984 332222111111
Q ss_pred E-EEeCCcEEEEEcCCCeEEEEEec--CCEEEecc--CCCeEEEEE---------eCCEEEEEECCCcEEEEECCC-Cce
Q 000744 1126 E-LTANAEIACFVSPATGVKVYNWS--GAIKHINF--NKHVKSLVM---------TGDKLYCGCSGYSIQEVDLGN-LTS 1190 (1306)
Q Consensus 1126 s-l~~~~~~v~~s~dg~~I~i~~~~--~~~~l~~~--~~~V~sl~~---------s~d~L~sgs~Dg~I~iwDl~~-~~~ 1190 (1306)
. +.-....+.+++||+.+.+.+++ ..+.+++. ..-+..+.. +++...+-|.||......+.+ |+
T Consensus 101 ~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~- 179 (352)
T TIGR02658 101 FLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGN- 179 (352)
T ss_pred hhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCc-
Confidence 0 00133455689999989888877 33444432 111222222 222333445666666554443 22
Q ss_pred eEEecCcccc-cC-CccEEE-EEEe--CCcEEEEEEecCCCEEEEEECCC-----CceEEEEec--------CCCEEEEE
Q 000744 1191 TTFYAGTKKL-LG-KQTIHS-LHMH--NGLLFAGGSSVDGTAGKVFSISS-----KTAVGSFTT--------GIDIQHLA 1252 (1306)
Q Consensus 1191 ~~~~~~~~~l-~g-h~~I~s-l~~s--~~~~llas~s~Dg~~I~IWD~~t-----~~~l~~l~~--------~~~V~sla 1252 (1306)
... . ...+ .+ +.++.. -.|. ++..+.++. +| +|.+.|+.. ......+.. ...+.-++
T Consensus 180 ~~~-~-~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~--eG-~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia 254 (352)
T TIGR02658 180 PKI-K-PTEVFHPEDEYLINHPAYSNKSGRLVWPTY--TG-KIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVA 254 (352)
T ss_pred eEE-e-eeeeecCCccccccCCceEcCCCcEEEEec--CC-eEEEEecCCCcceecceeeeccccccccccCCCcceeEE
Confidence 111 0 0011 11 001100 0223 455555565 46 899999544 333333321 12245599
Q ss_pred EcCc--EEEEEE----------CCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCCC-cc
Q 000744 1253 VNSD--FIFTAT----------KCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDGH-PY 1305 (1306)
Q Consensus 1253 ~spd--~Lasgs----------~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~-~L 1305 (1306)
++++ .++... ..+.|.++|..+++.+..+.. + ..+++++|+|||+ +|
T Consensus 255 ~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v---G---~~~~~iavS~Dgkp~l 314 (352)
T TIGR02658 255 YHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL---G---HEIDSINVSQDAKPLL 314 (352)
T ss_pred EcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC---C---CceeeEEECCCCCeEE
Confidence 9988 444422 225899999999999999984 2 3899999999999 44
No 294
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.38 E-value=1.4e-05 Score=88.32 Aligned_cols=225 Identities=13% Similarity=0.193 Sum_probs=144.9
Q ss_pred cEEEEEeCCCcEEEEeCCCc-------eEEcccC------------CCCEEEEEEeCC----EEEEEECCCcEEEEeCCC
Q 000744 1009 KALMNLSSVNATELWHCNEV-------TELDSST------------NGEVLSLIHLKG----RVLSSHSDGTIKMWDSGK 1065 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~-------~~i~~~H------------~~~V~sl~fspd----~LaSgs~Dg~I~vWd~~t 1065 (1306)
++||||..+|.|.++.-+.. +.....| ...|..+.|.++ .++..+.|.+|++|.+..
T Consensus 38 e~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~e 117 (433)
T KOG1354|consen 38 ERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRE 117 (433)
T ss_pred ceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeec
Confidence 89999999999999975431 2223344 345888899863 777788899999999853
Q ss_pred Cccc---------------------------------eEEEE-cccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 000744 1066 RVLR---------------------------------LIQEV-REHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEE 1111 (1306)
Q Consensus 1066 ~~~~---------------------------------~i~~l-~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~ 1111 (1306)
...+ |.+.+ ..|+.-|.++.++.|+..++|+. |=.|.+|++.-..
T Consensus 118 r~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d 196 (433)
T KOG1354|consen 118 RGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD-DLRINLWNLEIID 196 (433)
T ss_pred cccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-ceeeeeccccccC
Confidence 3211 11112 35788899999999999988864 6789999986432
Q ss_pred --eeEEEeec-----CCCCeEEEEe---CCcEEEEEcCCCeEEEEEecCC------EEEec-------------cCCCeE
Q 000744 1112 --IHCLQVHN-----VKEAVHELTA---NAEIACFVSPATGVKVYNWSGA------IKHIN-------------FNKHVK 1162 (1306)
Q Consensus 1112 --~~~i~~~~-----~~~~V~sl~~---~~~~v~~s~dg~~I~i~~~~~~------~~l~~-------------~~~~V~ 1162 (1306)
...+-..+ ...-|++-.| ...++.++.....|++.+.... .++.. .-..|.
T Consensus 197 ~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSIS 276 (433)
T KOG1354|consen 197 QSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSIS 276 (433)
T ss_pred CceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhh
Confidence 22221111 1234666666 2234444444444888887622 12211 135678
Q ss_pred EEEEeCC--EEEEEECCCcEEEEECC-CCceeEEecCccccc-------CCc---cEEEEEEeCCcEEEEEEecCCCEEE
Q 000744 1163 SLVMTGD--KLYCGCSGYSIQEVDLG-NLTSTTFYAGTKKLL-------GKQ---TIHSLHMHNGLLFAGGSSVDGTAGK 1229 (1306)
Q Consensus 1163 sl~~s~d--~L~sgs~Dg~I~iwDl~-~~~~~~~~~~~~~l~-------gh~---~I~sl~~s~~~~llas~s~Dg~~I~ 1229 (1306)
.+.|+++ ++++-. =-+|++||+. ..+++.+++-|..+. ... .-..++|+.+..++.+|+..+ ..+
T Consensus 277 DvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n-~fr 354 (433)
T KOG1354|consen 277 DVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNN-VFR 354 (433)
T ss_pred ceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccc-eEE
Confidence 8899865 454432 2689999994 566777766553322 111 234578888888888888887 899
Q ss_pred EEECCCC
Q 000744 1230 VFSISSK 1236 (1306)
Q Consensus 1230 IWD~~t~ 1236 (1306)
+|+...|
T Consensus 355 vf~~~~g 361 (433)
T KOG1354|consen 355 VFNLARG 361 (433)
T ss_pred EecCCCC
Confidence 9996554
No 295
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.37 E-value=2.8e-07 Score=76.17 Aligned_cols=47 Identities=36% Similarity=0.586 Sum_probs=40.7
Q ss_pred CcccCcccccccCCcEEcCCCCc-ccHHHHHHHHHcCCCCCCCCCCccC
Q 000744 342 KDFVCPITGQIFNDPVTLETGQT-YERKAIQEWLKRGNTTCPITRQPLC 389 (1306)
Q Consensus 342 ~~~~CpIc~~l~~dPv~~~cGht-fc~~cI~~~~~~~~~~CP~c~~~l~ 389 (1306)
+++.|+||++-..++++.+|||. ||..|+.+|+.. ...||.||+++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLKR-KKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT-TSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhccc-CCCCCcCChhhc
Confidence 46789999999999999999999 999999999994 778999998864
No 296
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=2.3e-07 Score=100.62 Aligned_cols=55 Identities=18% Similarity=0.420 Sum_probs=48.5
Q ss_pred CCCCcccCcccccccCCcEEcCCCCcccHHHHHHHHHcCCCCCCCCCCccCCCCCC
Q 000744 339 RPPKDFVCPITGQIFNDPVTLETGQTYERKAIQEWLKRGNTTCPITRQPLCSNSLP 394 (1306)
Q Consensus 339 ~~~~~~~CpIc~~l~~dPv~~~cGhtfc~~cI~~~~~~~~~~CP~c~~~l~~~~l~ 394 (1306)
..+..+.|.+|++-+.+|--++|||-||-.||.+|... ...||.||..+++..++
T Consensus 235 i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~pskvi 289 (293)
T KOG0317|consen 235 IPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQPSKVI 289 (293)
T ss_pred CCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCccee
Confidence 34566999999999999999999999999999999987 55699999998877763
No 297
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.31 E-value=6.7e-06 Score=93.05 Aligned_cols=164 Identities=14% Similarity=0.166 Sum_probs=110.1
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc--eeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEecc
Q 000744 1080 AVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEE--IHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINF 1157 (1306)
Q Consensus 1080 ~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~--~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~ 1157 (1306)
.+..+..++++++++.+..++...++++.... .+.+........-+.+. +..+...+.+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~-------~~~~~~sv~v------------ 124 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAIS-------FIREDTSVLV------------ 124 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceee-------eeeccceEEE------------
Confidence 34455677888888888888887788776643 22222222111222222 2222222211
Q ss_pred CCCeEEEEEeCCEEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCC
Q 000744 1158 NKHVKSLVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSK 1236 (1306)
Q Consensus 1158 ~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~ 1236 (1306)
.-..+....+.+|....+.+. .+.||- -+..+++++|..++.++..|+ .|+|-....-
T Consensus 125 -------------~dkagD~~~~di~s~~~~~~~-------~~lGhvSml~dVavS~D~~~IitaDRDE-kIRvs~ypa~ 183 (390)
T KOG3914|consen 125 -------------ADKAGDVYSFDILSADSGRCE-------PILGHVSMLLDVAVSPDDQFIITADRDE-KIRVSRYPAT 183 (390)
T ss_pred -------------EeecCCceeeeeecccccCcc-------hhhhhhhhhheeeecCCCCEEEEecCCc-eEEEEecCcc
Confidence 112234455666766654443 355777 899999999999999999999 7999887766
Q ss_pred ceEEEEe-cCC-CEEEEEEcCc-EEEEEECCCcEEEEECCCCeEEEEEec
Q 000744 1237 TAVGSFT-TGI-DIQHLAVNSD-FIFTATKCGTIEVWLKERVTRVASVKA 1283 (1306)
Q Consensus 1237 ~~l~~l~-~~~-~V~sla~spd-~Lasgs~Dg~I~IWd~~tg~~l~~l~~ 1283 (1306)
..+.+|. +|. -|..++.-++ .|++||.|++|++||+.+|+.+.++..
T Consensus 184 f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 184 FVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred cchhhhccccHhheeeeeeccCceeeecCCCCcEEEEecccCCcccccch
Confidence 6666665 444 4999999988 789999999999999999999887753
No 298
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.30 E-value=1.2e-06 Score=96.77 Aligned_cols=171 Identities=17% Similarity=0.134 Sum_probs=119.0
Q ss_pred EEeCC---EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc---eeEEE
Q 000744 1043 IHLKG---RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEE---IHCLQ 1116 (1306)
Q Consensus 1043 ~fspd---~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~---~~~i~ 1116 (1306)
+|+-+ +-++.+.+..|-+-|+.|| ..+.|. .++.|.++.|...++++..|..+|.|.+.|++.+. ..+.+
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg---~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~ 293 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETG---HQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ 293 (425)
T ss_pred hhhhccceeeecccccceeEEEEeecc---cccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE
Confidence 56533 3477777888999999997 234443 67789999999889999999999999999998752 33333
Q ss_pred eecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCCEEEEEECCCcEEEEECCCCce---eEE
Q 000744 1117 VHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGDKLYCGCSGYSIQEVDLGNLTS---TTF 1193 (1306)
Q Consensus 1117 ~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~---~~~ 1193 (1306)
.+.|...|+++. -+.|++.+|++.+.+|+|++||++.-++ +..
T Consensus 294 rlyh~Ssvtslq----------------------------------~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~q 339 (425)
T KOG2695|consen 294 RLYHDSSVTSLQ----------------------------------ILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQ 339 (425)
T ss_pred EEEcCcchhhhh----------------------------------hhccccceEeeccCcCceeEeeehhhhcccceee
Confidence 444444444443 1234566899999999999999997666 777
Q ss_pred ecCcccccCCccEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEecC-----CCEEEEEEcC
Q 000744 1194 YAGTKKLLGKQTIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFTTG-----IDIQHLAVNS 1255 (1306)
Q Consensus 1194 ~~~~~~l~gh~~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~~-----~~V~sla~sp 1255 (1306)
|.||... +.+ .-+.+++..-++++++.|. ..|||.+++++++.+++.. ..+.+++|..
T Consensus 340 YeGHvN~--~a~-l~~~v~~eeg~I~s~GdDc-ytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 340 YEGHVNL--SAY-LPAHVKEEEGSIFSVGDDC-YTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred eeccccc--ccc-cccccccccceEEEccCee-EEEEEecccCceeeccCCCCccccccccceehhc
Confidence 7765421 111 1223345544455555566 8999999999999998742 2466777654
No 299
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.29 E-value=3.1e-07 Score=73.68 Aligned_cols=40 Identities=45% Similarity=0.953 Sum_probs=34.2
Q ss_pred cCcccccccC---CcEEcCCCCcccHHHHHHHHHcCCCCCCCCC
Q 000744 345 VCPITGQIFN---DPVTLETGQTYERKAIQEWLKRGNTTCPITR 385 (1306)
Q Consensus 345 ~CpIc~~l~~---dPv~~~cGhtfc~~cI~~~~~~~~~~CP~c~ 385 (1306)
.||||++-|. .++.++|||.|+..||.+|++. +.+||.||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 4999999884 5668899999999999999998 56899996
No 300
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=1.7e-07 Score=103.77 Aligned_cols=70 Identities=23% Similarity=0.357 Sum_probs=59.2
Q ss_pred CCCCCcccCcccccccCCcEEc-CCCCcccHHHHHHHHHcCCCCCCCCCCccCCCCCCCccHHHHHHHHHH
Q 000744 338 SRPPKDFVCPITGQIFNDPVTL-ETGQTYERKAIQEWLKRGNTTCPITRQPLCSNSLPKTNYVLKRLITSW 407 (1306)
Q Consensus 338 ~~~~~~~~CpIc~~l~~dPv~~-~cGhtfc~~cI~~~~~~~~~~CP~c~~~l~~~~l~~~N~~L~~li~~~ 407 (1306)
..+..+++||||+++++..+++ .|+|.||..||...+..|+..||.||+.+..+.-+.++.....+|.+.
T Consensus 38 ~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i 108 (381)
T KOG0311|consen 38 AMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKI 108 (381)
T ss_pred HHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHH
Confidence 3566899999999999999977 599999999999999999999999999987665445776666676654
No 301
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.23 E-value=0.00063 Score=78.28 Aligned_cols=206 Identities=13% Similarity=0.061 Sum_probs=140.8
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCCceeEEEee-cC----CC--CeEE------EEe-CCcEEEEEcCCCeEEEEEecCC
Q 000744 1086 VPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVH-NV----KE--AVHE------LTA-NAEIACFVSPATGVKVYNWSGA 1151 (1306)
Q Consensus 1086 fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~-~~----~~--~V~s------l~~-~~~~v~~s~dg~~I~i~~~~~~ 1151 (1306)
.+.||+.++- +.-|.|.++|..+..++.+..- +. +. .+.- .+. ++..+++.+-|+....-.|++-
T Consensus 274 ~nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~ 352 (668)
T COG4946 274 ANSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGY 352 (668)
T ss_pred cCCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCe
Confidence 4567877654 3457799999988764433321 10 01 1111 111 6677778888886666666677
Q ss_pred EEEeccCCCeEEEEEe--CCEEEEEECCC-cEEEEECCCCceeEEecCcccccCCccEEEEEEeCCcEEEEEEecCCCEE
Q 000744 1152 IKHINFNKHVKSLVMT--GDKLYCGCSGY-SIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLLFAGGSSVDGTAG 1228 (1306)
Q Consensus 1152 ~~l~~~~~~V~sl~~s--~d~L~sgs~Dg-~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~s~Dg~~I 1228 (1306)
....++.+.|.-..+. ++.++.|..|| .+-+||..+++......+ -..|.++..++++.+++.+. |...|
T Consensus 353 ~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~------lg~I~av~vs~dGK~~vvaN-dr~el 425 (668)
T COG4946 353 SIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKD------LGNIEAVKVSPDGKKVVVAN-DRFEL 425 (668)
T ss_pred eEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCC------ccceEEEEEcCCCcEEEEEc-CceEE
Confidence 7777888888877776 55799999999 899999999876553221 11789999998888776663 55477
Q ss_pred EEEECCCCceEEEEec-CCCEEEEEEcCc--EEEEEECCC----cEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCC
Q 000744 1229 KVFSISSKTAVGSFTT-GIDIQHLAVNSD--FIFTATKCG----TIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVD 1301 (1306)
Q Consensus 1229 ~IWD~~t~~~l~~l~~-~~~V~sla~spd--~Lasgs~Dg----~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpd 1301 (1306)
-+.|+.++.....=+. .+-|+.++|||+ +++-+--+| .|+++|+.+++....-.. ...=.+=+|.||
T Consensus 426 ~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~------ta~DfsPaFD~d 499 (668)
T COG4946 426 WVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP------TAYDFSPAFDPD 499 (668)
T ss_pred EEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC------cccccCcccCCC
Confidence 8889999876443332 345999999999 777665554 689999999876655442 112245679999
Q ss_pred CCcc
Q 000744 1302 GHPY 1305 (1306)
Q Consensus 1302 g~~L 1305 (1306)
|++|
T Consensus 500 ~ryL 503 (668)
T COG4946 500 GRYL 503 (668)
T ss_pred CcEE
Confidence 9986
No 302
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=1.5e-05 Score=90.81 Aligned_cols=248 Identities=14% Similarity=0.100 Sum_probs=161.0
Q ss_pred ccCCCCEEEEEEeC-CEEEEEECCCcEEEEeCCC-CccceEEEEcccCccEEEEEEcCCCCEEEEEeC-CCcEEEEEcCC
Q 000744 1033 SSTNGEVLSLIHLK-GRVLSSHSDGTIKMWDSGK-RVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSL-DKTIRVWSIKP 1109 (1306)
Q Consensus 1033 ~~H~~~V~sl~fsp-d~LaSgs~Dg~I~vWd~~t-~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~-DgtI~VWdi~~ 1109 (1306)
.-|...|+.+..+. +++.+++.||.++.|.-.. ...+.+..+..|-..|.+++.+-+|..+.|++. |..+|++|+.+
T Consensus 6 ymhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 6 YMHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred hcccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 35888888887776 6999999999999998754 223566677889999999999999999999888 99999999987
Q ss_pred Cc-eeEEEeecCCCCeEEEEeCC----cEEEEEcCCCeEEEEEecCCEE-----EeccCCCeEEEEEeC--CEEEEEECC
Q 000744 1110 EE-IHCLQVHNVKEAVHELTANA----EIACFVSPATGVKVYNWSGAIK-----HINFNKHVKSLVMTG--DKLYCGCSG 1177 (1306)
Q Consensus 1110 ~~-~~~i~~~~~~~~V~sl~~~~----~~v~~s~dg~~I~i~~~~~~~~-----l~~~~~~V~sl~~s~--d~L~sgs~D 1177 (1306)
-. ...++....++.+..+.-.+ .+..-..+...+.+++-.+... .--|..+|.++.+++ +.+++....
T Consensus 86 ~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~ 165 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS 165 (558)
T ss_pred cchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence 53 11222222222222221111 1112222233355555443221 112788999999984 568888888
Q ss_pred CcEEEEECCC------CceeEEecCccccc----CCccEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEec---
Q 000744 1178 YSIQEVDLGN------LTSTTFYAGTKKLL----GKQTIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFTT--- 1244 (1306)
Q Consensus 1178 g~I~iwDl~~------~~~~~~~~~~~~l~----gh~~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~--- 1244 (1306)
|.|..|.... ......++....+. ......++.|++++..+..-+.|. .|++++..+|+.++.+..
T Consensus 166 gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~Dr-kVR~F~~KtGklvqeiDE~~t 244 (558)
T KOG0882|consen 166 GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDR-KVRGFVFKTGKLVQEIDEVLT 244 (558)
T ss_pred ceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCccc-EEEEEEeccchhhhhhhccch
Confidence 9999998773 11111111111111 122678899998888888777676 899999999876554420
Q ss_pred -----------------------------CC--CEEEEEEcCc--EEEEEECCCcEEEEECCCCeEEEEEe
Q 000744 1245 -----------------------------GI--DIQHLAVNSD--FIFTATKCGTIEVWLKERVTRVASVK 1282 (1306)
Q Consensus 1245 -----------------------------~~--~V~sla~spd--~Lasgs~Dg~I~IWd~~tg~~l~~l~ 1282 (1306)
++ .-+.+.|+.. +|+-|+-=| |+|.++.++.+++.+-
T Consensus 245 ~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 245 DAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILG 314 (558)
T ss_pred hhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence 00 1234455443 777666554 8999999998887764
No 303
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.22 E-value=1.1e-06 Score=70.38 Aligned_cols=43 Identities=44% Similarity=0.957 Sum_probs=38.6
Q ss_pred cCcccccccCCcEEcC-CCCcccHHHHHHHHHcCCCCCCCCCCc
Q 000744 345 VCPITGQIFNDPVTLE-TGQTYERKAIQEWLKRGNTTCPITRQP 387 (1306)
Q Consensus 345 ~CpIc~~l~~dPv~~~-cGhtfc~~cI~~~~~~~~~~CP~c~~~ 387 (1306)
.|+||.+.+.+|+.+. |||.||..|+.+|+..+...||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 4999999998888776 999999999999999877789999875
No 304
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=98.22 E-value=1.6e-05 Score=97.78 Aligned_cols=268 Identities=13% Similarity=0.082 Sum_probs=180.4
Q ss_pred hChhhHHHhhcCCCCHHHHHHHHHHHHHHhhhcCCCcccccccccccchHHHHHHHhcCCcHHHHHHHHHHHHHHhccCc
Q 000744 488 NGLKPYVTCLCTSENLQECETAVLAIARLWKESKGDPGVHAYLLKPTIINGFAEILSASLSREVLRTSVYILSELMVADE 567 (1306)
Q Consensus 488 ~~~~~~l~~Ll~s~~~~~~e~Av~~i~~L~~~~~~~~~~~~~i~~~~~I~~Lv~~L~~~~~~~~~e~Av~~L~~L~s~~~ 567 (1306)
-+-++.|+.|+.+.+.+.|.+|..+++||.-...+. +++..|.+.+.|+.+|++|+...|.+++|+...+|.||.|. |
T Consensus 274 lggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~-~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D 351 (717)
T KOG1048|consen 274 LGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTD-SNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-D 351 (717)
T ss_pred hccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCc-ccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-h
Confidence 345778888999999999999999999999877653 46789999999999999999966999999999999999655 5
Q ss_pred cccccccccCCchHHHHHHHhc---C--------------h-HHHHHHHhccCC----CHHHHhh-CCchHHHHHHhhcC
Q 000744 568 SVGDILTSVDSDFDCLAALLKN---G--------------L-GEAAVLIYQLRP----AFAQLSA-HEFIPSLVQLVLNK 624 (1306)
Q Consensus 568 ~~~~~I~~~~~~i~~Lv~lLk~---g--------------~-~~Aa~aL~~L~~----~~~~i~~-~g~i~~Lv~ll~~g 624 (1306)
..|..|.. .+++.|-.-+=. | . .+++.-|=||+. -+.++.+ .|.|.+||..++..
T Consensus 352 ~lK~~ii~--~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~ 429 (717)
T KOG1048|consen 352 ALKMLIIT--SALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTA 429 (717)
T ss_pred HHHHHHHH--HHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHH
Confidence 67777774 556655443311 1 1 688889999977 5666776 79999999999853
Q ss_pred CccccchhcccCchHHHHHHHHHHHccCCCCC---------------chh-------------------------hhhH-
Q 000744 625 TEEFDELQFVMEPKDAAIEMLEQILMGGDKKS---------------RSI-------------------------TALS- 663 (1306)
Q Consensus 625 ~~~~~~~~~~~~~k~aa~~lL~~l~~~~~~~~---------------~~~-------------------------n~~~- 663 (1306)
-...+. --.+=..++-+|.+|..--+..+ +.+ +...
T Consensus 430 i~~~~~---d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~ 506 (717)
T KOG1048|consen 430 IQKSDL---DSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERAT 506 (717)
T ss_pred HHhccc---cchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCccccc
Confidence 311110 00112356666666653322000 000 0001
Q ss_pred -------hhcCCCHHHHHhhc---CChhHHHHHHHHHHhhhhccch----hHHHH-HHhcccchhhhhhhcCCchhHhHH
Q 000744 664 -------LISANGIPALIKCL---DRVEVRRSIVSILLCCMHADKS----CKTLI-AKRIELSHVLDLFHDGNDSVRGIC 728 (1306)
Q Consensus 664 -------i~~~g~i~~Lv~~l---~~~~~~~~~~~~L~~~~~~~~~----~r~~i-~~~~~~~~l~~ll~~g~~~~k~~a 728 (1306)
....-.|..=+.+| .+..--++++++|-++..++.. .|..| -++-+.+++++||+.+.++..+.+
T Consensus 507 ~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~ 586 (717)
T KOG1048|consen 507 APKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSA 586 (717)
T ss_pred CCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHH
Confidence 11111232212222 4555567788888776666633 23344 668899999999999999999999
Q ss_pred HHHHHHHHhcchhhhHHHHHHHhhhcCCcchHHHHHHHhhcCCC
Q 000744 729 INFLSELVLLNRRTFSNQILQVIRDEGSFSTMHTFLVYLQMAPM 772 (1306)
Q Consensus 729 ~~~L~~L~~~~~~~~~~~~l~~i~~~g~~~~m~~ll~~l~~~~~ 772 (1306)
..+|.+|..-.| ....|+ .++ |..|+.+|..+.+
T Consensus 587 a~~LrNls~d~r------nk~lig-k~a---~~~lv~~Lp~~~~ 620 (717)
T KOG1048|consen 587 AGALRNLSRDIR------NKELIG-KYA---IPDLVRCLPGSGP 620 (717)
T ss_pred HHHHhhhccCch------hhhhhh-cch---HHHHHHhCcCCCC
Confidence 999988854433 112222 333 5559999988777
No 305
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.20 E-value=0.0001 Score=89.82 Aligned_cols=204 Identities=12% Similarity=-0.026 Sum_probs=112.1
Q ss_pred CcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCE---EEEEeCCC--cEEEEEcCCCceeEEEeecCCCCeEEEEeC
Q 000744 1056 GTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDK---LYSGSLDK--TIRVWSIKPEEIHCLQVHNVKEAVHELTAN 1130 (1306)
Q Consensus 1056 g~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~---L~Sgs~Dg--tI~VWdi~~~~~~~i~~~~~~~~V~sl~~~ 1130 (1306)
+.|.+.|.+++ .. +.+..+...+.+=.|+|||+. +++...+| .|.+.++.+++...+..+. +.....
T Consensus 165 ~~l~~~d~dG~--~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~--g~~~~p--- 236 (428)
T PRK01029 165 GELWSVDYDGQ--NL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQ--GNQLMP--- 236 (428)
T ss_pred ceEEEEcCCCC--Cc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCC--CCccce---
Confidence 45777777665 22 334344556677799999974 23444444 4666788777544443332 222233
Q ss_pred CcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCCEEEEEECCCcEEEEECCCC---ceeEEecCcccccCCc-cE
Q 000744 1131 AEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGDKLYCGCSGYSIQEVDLGNL---TSTTFYAGTKKLLGKQ-TI 1206 (1306)
Q Consensus 1131 ~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~---~~~~~~~~~~~l~gh~-~I 1206 (1306)
.|+|||+.|...... .|..|..+..||+.++ ....... +.. ..
T Consensus 237 ----~wSPDG~~Laf~s~~-----------------------~g~~di~~~~~~~~~g~~g~~~~lt~------~~~~~~ 283 (428)
T PRK01029 237 ----TFSPRKKLLAFISDR-----------------------YGNPDLFIQSFSLETGAIGKPRRLLN------EAFGTQ 283 (428)
T ss_pred ----EECCCCCEEEEEECC-----------------------CCCcceeEEEeecccCCCCcceEeec------CCCCCc
Confidence 388888744321100 0111333445676643 2222211 111 33
Q ss_pred EEEEEeCCcEEEE-EEecCCC-EEEEEECCC-CceEEEEec-CCCEEEEEEcCc--EEEEEECC---CcEEEEECCCCeE
Q 000744 1207 HSLHMHNGLLFAG-GSSVDGT-AGKVFSISS-KTAVGSFTT-GIDIQHLAVNSD--FIFTATKC---GTIEVWLKERVTR 1277 (1306)
Q Consensus 1207 ~sl~~s~~~~lla-s~s~Dg~-~I~IWD~~t-~~~l~~l~~-~~~V~sla~spd--~Lasgs~D---g~I~IWd~~tg~~ 1277 (1306)
....|+|++..++ ++..++. .|+++++.. +.....+.. ...+....|+|| .|+..+.+ ..|.+||+.+++.
T Consensus 284 ~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~ 363 (428)
T PRK01029 284 GNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD 363 (428)
T ss_pred CCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe
Confidence 5678998876444 4333441 244445432 233344443 345778899998 55554433 4699999998875
Q ss_pred EEEEecccCCCCCCCeEEEEEcCCCCccC
Q 000744 1278 VASVKANNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1278 l~~l~~~~~~~~~~~V~slafSpdg~~La 1306 (1306)
. .+.. ....+.+..|+|||++|+
T Consensus 364 ~-~Lt~-----~~~~~~~p~wSpDG~~L~ 386 (428)
T PRK01029 364 Y-QLTT-----SPENKESPSWAIDSLHLV 386 (428)
T ss_pred E-EccC-----CCCCccceEECCCCCEEE
Confidence 4 3432 123567889999999874
No 306
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=9.5e-07 Score=103.34 Aligned_cols=70 Identities=24% Similarity=0.505 Sum_probs=60.5
Q ss_pred CCCCcccCcccccccCCcEEcCCCCcccHHHHHHHHHcCCCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHCC
Q 000744 339 RPPKDFVCPITGQIFNDPVTLETGQTYERKAIQEWLKRGNTTCPITRQPLCSNSLPKTNYVLKRLITSWKEQYP 412 (1306)
Q Consensus 339 ~~~~~~~CpIc~~l~~dPv~~~cGhtfc~~cI~~~~~~~~~~CP~c~~~l~~~~l~~~N~~L~~li~~~~~~~~ 412 (1306)
...+++.||||++.|.+|++++|||+||+.|+..++. +...||.|+. ... .+. +|..+.++++..+....
T Consensus 9 ~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~~-~~~-~n~~l~~~~~~~~~~~~ 78 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-PSR-NLR-PNVLLANLVERLRQLRL 78 (386)
T ss_pred hccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-chh-ccC-ccHHHHHHHHHHHhcCC
Confidence 3458899999999999999999999999999999998 6778999996 333 664 99999999999887654
No 307
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.18 E-value=6.6e-07 Score=75.39 Aligned_cols=43 Identities=40% Similarity=0.857 Sum_probs=30.7
Q ss_pred CcccCcccccccCCcEEc-CCCCcccHHHHHHHHH-cCCCCCCCC
Q 000744 342 KDFVCPITGQIFNDPVTL-ETGQTYERKAIQEWLK-RGNTTCPIT 384 (1306)
Q Consensus 342 ~~~~CpIc~~l~~dPv~~-~cGhtfc~~cI~~~~~-~~~~~CP~c 384 (1306)
-.+.|||++..|.|||.. .|||+|++.+|.+++. .+...||+.
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~ 54 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVA 54 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCC
Confidence 468999999999999965 8999999999999994 445679984
No 308
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.17 E-value=1.5e-06 Score=105.00 Aligned_cols=211 Identities=13% Similarity=0.138 Sum_probs=145.1
Q ss_pred EcccCCCCEEEEEEeCC--EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCC--cEEEEE
Q 000744 1031 LDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDK--TIRVWS 1106 (1306)
Q Consensus 1031 i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~Dg--tI~VWd 1106 (1306)
.+..|+...+|++|+.+ +|+.|+..|.|+++++.+| .....+.+|..+|+-+.=+.||..+++.+.-. -..+|+
T Consensus 1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG--~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG--SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred hhhccccceeeEEeecCCceEEeeeccceEEEEEccCc--cccccccccccccccccccCCcceeeeeccccCchHHHhc
Confidence 44567889999999974 9999999999999999999 77788899999999999888998777655433 357898
Q ss_pred cCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCC--EEEEEECCCcEEEEE
Q 000744 1107 IKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGD--KLYCGCSGYSIQEVD 1184 (1306)
Q Consensus 1107 i~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d--~L~sgs~Dg~I~iwD 1184 (1306)
+..- . +++.+.. .-.++.|+.. .-+.|+.-....+||
T Consensus 1174 ~~s~-~---------~~~Hsf~-------------------------------ed~~vkFsn~~q~r~~gt~~d~a~~YD 1212 (1516)
T KOG1832|consen 1174 ASST-G---------GPRHSFD-------------------------------EDKAVKFSNSLQFRALGTEADDALLYD 1212 (1516)
T ss_pred cccc-c---------Ccccccc-------------------------------ccceeehhhhHHHHHhcccccceEEEe
Confidence 8652 1 1111111 1123344432 234455556789999
Q ss_pred CCCCceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEecCCCEEEEEEcCc--EEEEE
Q 000744 1185 LGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFTTGIDIQHLAVNSD--FIFTA 1261 (1306)
Q Consensus 1185 l~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~~~~V~sla~spd--~Lasg 1261 (1306)
+.++....+|-.. ..+.+ .-+...|+|...++.- || .+||++..+.++.|..-..-..=.|||. -++..
T Consensus 1213 vqT~~~l~tylt~--~~~~~y~~n~a~FsP~D~LIln---dG---vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIIN 1284 (1516)
T KOG1832|consen 1213 VQTCSPLQTYLTD--TVTSSYSNNLAHFSPCDTLILN---DG---VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIIN 1284 (1516)
T ss_pred cccCcHHHHhcCc--chhhhhhccccccCCCcceEee---Cc---eeeeeccHHHHhhhhhheecccccccCCCceEEee
Confidence 9998877763211 11222 3467788988777754 66 7899999888887764332233358887 55554
Q ss_pred ECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCCCc
Q 000744 1262 TKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDGHP 1304 (1306)
Q Consensus 1262 s~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~~ 1304 (1306)
+ .|||++|.+.+++.+. . .=..|.|+..|..
T Consensus 1285 S-----EIwD~RTF~lLh~VP~---L----dqc~VtFNstG~V 1315 (1516)
T KOG1832|consen 1285 S-----EIWDMRTFKLLHSVPS---L----DQCAVTFNSTGDV 1315 (1516)
T ss_pred c-----hhhhhHHHHHHhcCcc---c----cceEEEeccCccc
Confidence 4 4999999888877653 1 1256778887764
No 309
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=6.3e-05 Score=91.66 Aligned_cols=181 Identities=11% Similarity=0.057 Sum_probs=129.3
Q ss_pred CCCEEEEEEeCCEEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEE
Q 000744 1036 NGEVLSLIHLKGRVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCL 1115 (1306)
Q Consensus 1036 ~~~V~sl~fspd~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i 1115 (1306)
...++|++++..+|+-|+-+|.|++.+.... + .+...|... ..+|.+++|||.||+|.|-.+-+.+..+.
T Consensus 39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~~---~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 39 NDAISCCAVHDKFFALGTHRGAVYLTTCQGN---P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hhHHHHHHhhcceeeeccccceEEEEecCCc---c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 5568888899999999999999999998764 3 444456554 56899999999999999998888743333
Q ss_pred EeecCCCCeEEEEeCCc--------EEEEEcCCCeEEEEEec--C---CEEEeccCCCeEEEEEeCCEEEEEECCCcEEE
Q 000744 1116 QVHNVKEAVHELTANAE--------IACFVSPATGVKVYNWS--G---AIKHINFNKHVKSLVMTGDKLYCGCSGYSIQE 1182 (1306)
Q Consensus 1116 ~~~~~~~~V~sl~~~~~--------~v~~s~dg~~I~i~~~~--~---~~~l~~~~~~V~sl~~s~d~L~sgs~Dg~I~i 1182 (1306)
++.+.++.++++++. +++.+-.| +.++.-+ | .+.+....++|.++.|.++.++-++.+| |++
T Consensus 109 --~df~rpiksial~Pd~~~~~sk~fv~GG~ag--lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~lIAWand~G-v~v 183 (846)
T KOG2066|consen 109 --YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG--LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGNLIAWANDDG-VKV 183 (846)
T ss_pred --EecCCcceeEEeccchhhhhhhheeecCcce--EEEehhhhhcCccceeeecCccceEEEEecCcEEEEecCCC-cEE
Confidence 444488888886332 22222222 3333322 2 2334456899999999999999888777 899
Q ss_pred EECCCCceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECC
Q 000744 1183 VDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSIS 1234 (1306)
Q Consensus 1183 wDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~ 1234 (1306)
||+.+++.+...+......... .-..+.|.++..++.|- .. +|+|..++
T Consensus 184 yd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW--~d-~v~i~~I~ 233 (846)
T KOG2066|consen 184 YDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGW--GD-SVKICSIK 233 (846)
T ss_pred EeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEec--CC-eEEEEEEe
Confidence 9999988877665443222222 44568898888888775 34 79999887
No 310
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.15 E-value=0.00096 Score=80.67 Aligned_cols=254 Identities=11% Similarity=0.070 Sum_probs=152.1
Q ss_pred cEEEEEeCCCcEEEEeCCCceEEcccC-CCCEE-EEEEeCCEEEEEECCCcEEEEeCCCCccceEEEEcccCccEEE-EE
Q 000744 1009 KALMNLSSVNATELWHCNEVTELDSST-NGEVL-SLIHLKGRVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTC-LY 1085 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~~~i~~~H-~~~V~-sl~fspd~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~s-l~ 1085 (1306)
..++.++.+|.+.-+|.++........ .+.+. +.....+.++.++.+|.+..+|..+| +.+..+......+.. ..
T Consensus 121 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG--~~~W~~~~~~~~~~~~~~ 198 (394)
T PRK11138 121 GKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDG--AVKWTVNLDVPSLTLRGE 198 (394)
T ss_pred CEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCC--CEeeeecCCCCcccccCC
Confidence 567778888999999987654443221 12222 22334568888999999999999999 666666432111100 00
Q ss_pred EcC--CCCEEEEEeCCCcEEEEEcCCCceeEEEeecCC---CC------e-EE-EEeCCcEEEEEcCCCeEEEEEecCCE
Q 000744 1086 VPS--SGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVK---EA------V-HE-LTANAEIACFVSPATGVKVYNWSGAI 1152 (1306)
Q Consensus 1086 fsp--dg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~---~~------V-~s-l~~~~~~v~~s~dg~~I~i~~~~~~~ 1152 (1306)
-+| .+..++.++.+|.+..+|..+++..-....... .. + .+ +..++.++..+.+|. +...+.....
T Consensus 199 ~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~-l~ald~~tG~ 277 (394)
T PRK11138 199 SAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGN-LVALDLRSGQ 277 (394)
T ss_pred CCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCe-EEEEECCCCC
Confidence 112 234577788899999999988862111111000 00 0 11 112444444555554 6666665445
Q ss_pred EEeccC-CCeEEEEEeCCEEEEEECCCcEEEEECCCCceeEEecCcccccCCccEEEEEEeCCcEEEEEEecCCCEEEEE
Q 000744 1153 KHINFN-KHVKSLVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLLFAGGSSVDGTAGKVF 1231 (1306)
Q Consensus 1153 ~l~~~~-~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~s~Dg~~I~IW 1231 (1306)
.+|... .....+...++.++.++.||.+..+|..+|+.+-.... + .+....+..+.++..++.+ .|| .+.++
T Consensus 278 ~~W~~~~~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~---~-~~~~~~sp~v~~g~l~v~~--~~G-~l~~l 350 (394)
T PRK11138 278 IVWKREYGSVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSD---L-LHRLLTAPVLYNGYLVVGD--SEG-YLHWI 350 (394)
T ss_pred EEEeecCCCccCcEEECCEEEEEcCCCeEEEEECCCCcEEEcccc---c-CCCcccCCEEECCEEEEEe--CCC-EEEEE
Confidence 556432 22234556688899999999999999999987653321 1 1112222333455554433 477 89999
Q ss_pred ECCCCceEEEEec-CCCEE-EEEEcCcEEEEEECCCcEEEEEC
Q 000744 1232 SISSKTAVGSFTT-GIDIQ-HLAVNSDFIFTATKCGTIEVWLK 1272 (1306)
Q Consensus 1232 D~~t~~~l~~l~~-~~~V~-sla~spd~Lasgs~Dg~I~IWd~ 1272 (1306)
|..+|+.+.+..- ...+. +..+..+.|+.++.||.|+.++.
T Consensus 351 d~~tG~~~~~~~~~~~~~~s~P~~~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 351 NREDGRFVAQQKVDSSGFLSEPVVADDKLLIQARDGTVYAITR 393 (394)
T ss_pred ECCCCCEEEEEEcCCCcceeCCEEECCEEEEEeCCceEEEEeC
Confidence 9999999888763 33333 33344558999999999988764
No 311
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.15 E-value=5.4e-06 Score=64.42 Aligned_cols=38 Identities=34% Similarity=0.616 Sum_probs=36.7
Q ss_pred ceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 000744 1069 RLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWS 1106 (1306)
Q Consensus 1069 ~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWd 1106 (1306)
+++.++++|.+.|++++|+|++++|++|+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 67899999999999999999999999999999999997
No 312
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.13 E-value=1.6e-05 Score=89.98 Aligned_cols=147 Identities=10% Similarity=0.114 Sum_probs=98.7
Q ss_pred cEEEEEeCCCcEEEEeCCCceE---E---ccc--CCCCEEEEEEeCC--EEEEEECCCcEEEEeCCCCccceEEEEcccC
Q 000744 1009 KALMNLSSVNATELWHCNEVTE---L---DSS--TNGEVLSLIHLKG--RVLSSHSDGTIKMWDSGKRVLRLIQEVREHT 1078 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~~~---i---~~~--H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~ 1078 (1306)
+++|.+..++...++++..... . ... ....++.+..+.. ..-..+....+.+|....+ .+ ..+-||-
T Consensus 75 ~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~--~~-~~~lGhv 151 (390)
T KOG3914|consen 75 RLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG--RC-EPILGHV 151 (390)
T ss_pred eEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeeccccc--Cc-chhhhhh
Confidence 7888888888877777653211 1 111 1122222333222 2233445566777777655 33 3345999
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccC
Q 000744 1079 RAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFN 1158 (1306)
Q Consensus 1079 ~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~ 1158 (1306)
..++.|+|+||+++++++..|..|+|-..... ..|.+. ..+|.
T Consensus 152 Sml~dVavS~D~~~IitaDRDEkIRvs~ypa~-----------f~Iesf--------------------------clGH~ 194 (390)
T KOG3914|consen 152 SMLLDVAVSPDDQFIITADRDEKIRVSRYPAT-----------FVIESF--------------------------CLGHK 194 (390)
T ss_pred hhhheeeecCCCCEEEEecCCceEEEEecCcc-----------cchhhh--------------------------ccccH
Confidence 99999999999999999999999998766542 111111 23477
Q ss_pred CCeEEEEEeCCE-EEEEECCCcEEEEECCCCceeEEec
Q 000744 1159 KHVKSLVMTGDK-LYCGCSGYSIQEVDLGNLTSTTFYA 1195 (1306)
Q Consensus 1159 ~~V~sl~~s~d~-L~sgs~Dg~I~iwDl~~~~~~~~~~ 1195 (1306)
..|..++..+++ |++||.|+++++||+.+|+.+.++.
T Consensus 195 eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 195 EFVSTISLTDNYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred hheeeeeeccCceeeecCCCCcEEEEecccCCcccccc
Confidence 777788877765 7999999999999999999887654
No 313
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.12 E-value=8.9e-05 Score=89.44 Aligned_cols=98 Identities=12% Similarity=0.110 Sum_probs=76.1
Q ss_pred cEEEEEeCCCcEEEEeCCC--ceEEcccCCCCEEEEEEeC------CEEEEEECCCcEEEEeCCCCccceEEEEcccCcc
Q 000744 1009 KALMNLSSVNATELWHCNE--VTELDSSTNGEVLSLIHLK------GRVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRA 1080 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~--~~~i~~~H~~~V~sl~fsp------d~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~ 1080 (1306)
-+||++...|.|.+||... ...-...|..+|..++|-+ +.|+.-....++.+||..+| +....+......
T Consensus 80 lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG--~k~Wk~~ys~~i 157 (1062)
T KOG1912|consen 80 LLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTG--EKFWKYDYSHEI 157 (1062)
T ss_pred eeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCC--ceeeccccCCcc
Confidence 4689999999999999875 3334456788999999975 37777778889999999999 777766655667
Q ss_pred EEEEEEcC-CCCEEEEEeCCCcEEEEEcC
Q 000744 1081 VTCLYVPS-SGDKLYSGSLDKTIRVWSIK 1108 (1306)
Q Consensus 1081 V~sl~fsp-dg~~L~Sgs~DgtI~VWdi~ 1108 (1306)
..|+.+.| |.+.+..-+..|.+.+-+.-
T Consensus 158 Ls~f~~DPfd~rh~~~l~s~g~vl~~~~l 186 (1062)
T KOG1912|consen 158 LSCFRVDPFDSRHFCVLGSKGFVLSCKDL 186 (1062)
T ss_pred eeeeeeCCCCcceEEEEccCceEEEEecc
Confidence 78899999 66767666667777766653
No 314
>PHA02926 zinc finger-like protein; Provisional
Probab=98.11 E-value=1.7e-06 Score=90.48 Aligned_cols=50 Identities=18% Similarity=0.348 Sum_probs=40.4
Q ss_pred CCCcccCcccccccCC---------cEEcCCCCcccHHHHHHHHHcC-----CCCCCCCCCccC
Q 000744 340 PPKDFVCPITGQIFND---------PVTLETGQTYERKAIQEWLKRG-----NTTCPITRQPLC 389 (1306)
Q Consensus 340 ~~~~~~CpIc~~l~~d---------Pv~~~cGhtfc~~cI~~~~~~~-----~~~CP~c~~~l~ 389 (1306)
..++..|+||++...+ ++..+|+|+||..||.+|.+.. ...||+||..+.
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 3467899999998754 3566899999999999999842 346999998865
No 315
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.11 E-value=2.7e-06 Score=65.74 Aligned_cols=39 Identities=51% Similarity=1.027 Sum_probs=36.3
Q ss_pred CcccccccCCcEEcCCCCcccHHHHHHHHHcCCCCCCCC
Q 000744 346 CPITGQIFNDPVTLETGQTYERKAIQEWLKRGNTTCPIT 384 (1306)
Q Consensus 346 CpIc~~l~~dPv~~~cGhtfc~~cI~~~~~~~~~~CP~c 384 (1306)
|+||++...+|+.++|||.||..|+.+|++.+...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999999667789987
No 316
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.10 E-value=1.5e-05 Score=95.27 Aligned_cols=232 Identities=14% Similarity=0.165 Sum_probs=144.6
Q ss_pred CEEEEEEeC----CEEEEEECCCcEEEEeCCCCcc-ceEEEEcccCccEEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCc
Q 000744 1038 EVLSLIHLK----GRVLSSHSDGTIKMWDSGKRVL-RLIQEVREHTRAVTCLYVPSS-GDKLYSGSLDKTIRVWSIKPEE 1111 (1306)
Q Consensus 1038 ~V~sl~fsp----d~LaSgs~Dg~I~vWd~~t~~~-~~i~~l~~H~~~V~sl~fspd-g~~L~Sgs~DgtI~VWdi~~~~ 1111 (1306)
.|-.+.|++ ++-++......-.+|++....- ..-..+.+|...|+.+.|+|. ...+++++.|-.+..||+++..
T Consensus 69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~ 148 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH 148 (1081)
T ss_pred hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC
Confidence 366778886 3444444445566799853321 233455789999999999994 5689999999999999999875
Q ss_pred eeEEEeecCCCCeEEEEe--CCcEEEEEcCCCeEEEEEec-CCE---EEeccCCCeEEEEEeC---CEEEEEECCCcEEE
Q 000744 1112 IHCLQVHNVKEAVHELTA--NAEIACFVSPATGVKVYNWS-GAI---KHINFNKHVKSLVMTG---DKLYCGCSGYSIQE 1182 (1306)
Q Consensus 1112 ~~~i~~~~~~~~V~sl~~--~~~~v~~s~dg~~I~i~~~~-~~~---~l~~~~~~V~sl~~s~---d~L~sgs~Dg~I~i 1182 (1306)
...............+.| .+.-+..+..|+.+.+|+.. |.. .+.+|...|+++.|+. ..+.+.+.||+++.
T Consensus 149 ~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkf 228 (1081)
T KOG0309|consen 149 RPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKF 228 (1081)
T ss_pred cceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceee
Confidence 222222233345556666 34445577788889999988 332 2335667777777773 35899999999999
Q ss_pred EECCCCceeEEecCcccccCCccEEEEEEe-----------CCcEEEEEEecCCCEEEEEECCC-CceEEEEecCCC-EE
Q 000744 1183 VDLGNLTSTTFYAGTKKLLGKQTIHSLHMH-----------NGLLFAGGSSVDGTAGKVFSISS-KTAVGSFTTGID-IQ 1249 (1306)
Q Consensus 1183 wDl~~~~~~~~~~~~~~l~gh~~I~sl~~s-----------~~~~llas~s~Dg~~I~IWD~~t-~~~l~~l~~~~~-V~ 1249 (1306)
||..+........ +....+|+.-.+- .++..+--...++ .-..|+..+ .+.+++|.+|.+ |.
T Consensus 229 w~y~kSt~e~~~~----vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n-~d~e~n~~~~~~pVh~F~GH~D~V~ 303 (1081)
T KOG0309|consen 229 WDYSKSTTESKRT----VTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCEN-SDLEWNVFDLNTPVHTFVGHDDVVL 303 (1081)
T ss_pred eccccccccccee----ccccCcceeccccccCceeEeccccCCeeeeeccccc-hhhhhccccCCcceeeecCcchHHH
Confidence 9987643222111 1111134333332 1222111111122 234455544 467899987765 43
Q ss_pred EEEE--------cCc----EEEEEECCCcEEEEECCC
Q 000744 1250 HLAV--------NSD----FIFTATKCGTIEVWLKER 1274 (1306)
Q Consensus 1250 sla~--------spd----~Lasgs~Dg~I~IWd~~t 1274 (1306)
..-| +-| .|+|-|.|.++++|-+.+
T Consensus 304 eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 304 EFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred HHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 3333 112 899999999999998864
No 317
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.08 E-value=8e-05 Score=82.69 Aligned_cols=235 Identities=14% Similarity=0.169 Sum_probs=143.8
Q ss_pred EcccCCCCEEEEEEeC--CEEEEEECCCcEEEEeCC-CCccceEEEE-cccCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 000744 1031 LDSSTNGEVLSLIHLK--GRVLSSHSDGTIKMWDSG-KRVLRLIQEV-REHTRAVTCLYVPSSGDKLYSGSLDKTIRVWS 1106 (1306)
Q Consensus 1031 i~~~H~~~V~sl~fsp--d~LaSgs~Dg~I~vWd~~-t~~~~~i~~l-~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWd 1106 (1306)
...||...|+....-| +-+++.+.|.+++||--. .+ +.-..+ ..-..+++++.++++...|+.|-..|++.-+.
T Consensus 19 ~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~--q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs 96 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSG--QYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFA 96 (404)
T ss_pred hhcCchhhhhhheeccCCCCeEEccccceeeeEEecccc--ccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEE
Confidence 3457777777776665 489999999999999654 33 222222 12356899999999999999999999998876
Q ss_pred cCCCc--eeEEEe-ecCCCCeEEEEe--CCcEEEEEcCCCeEEEEEecCCEEE--eccCCCeEEEEEeCCEEEEEECCCc
Q 000744 1107 IKPEE--IHCLQV-HNVKEAVHELTA--NAEIACFVSPATGVKVYNWSGAIKH--INFNKHVKSLVMTGDKLYCGCSGYS 1179 (1306)
Q Consensus 1107 i~~~~--~~~i~~-~~~~~~V~sl~~--~~~~v~~s~dg~~I~i~~~~~~~~l--~~~~~~V~sl~~s~d~L~sgs~Dg~ 1179 (1306)
+...- ....+. ..|...|..+.| ....+.....++.+.-........+ +......+++.+.-.+.+.|...|.
T Consensus 97 ~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gq 176 (404)
T KOG1409|consen 97 LSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQ 176 (404)
T ss_pred hhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccc
Confidence 65321 111121 235577777776 2222222222222222221111111 1111111122222114556666666
Q ss_pred EEEEECCC--CceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCce-EEEEe-cCCCEEEEEEc
Q 000744 1180 IQEVDLGN--LTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTA-VGSFT-TGIDIQHLAVN 1254 (1306)
Q Consensus 1180 I~iwDl~~--~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~-l~~l~-~~~~V~sla~s 1254 (1306)
|.+-.+.. -..+. ++.+|. .++++.|.+...++.++..|. .+.+||+--++- ...+. |+..|..+..-
T Consensus 177 vt~lr~~~~~~~~i~------~~~~h~~~~~~l~Wd~~~~~LfSg~~d~-~vi~wdigg~~g~~~el~gh~~kV~~l~~~ 249 (404)
T KOG1409|consen 177 ITMLKLEQNGCQLIT------TFNGHTGEVTCLKWDPGQRLLFSGASDH-SVIMWDIGGRKGTAYELQGHNDKVQALSYA 249 (404)
T ss_pred eEEEEEeecCCceEE------EEcCcccceEEEEEcCCCcEEEeccccC-ceEEEeccCCcceeeeeccchhhhhhhhhh
Confidence 66554433 23333 355777 999999998888888887787 799999965432 23333 45567777765
Q ss_pred Cc--EEEEEECCCcEEEEECCC
Q 000744 1255 SD--FIFTATKCGTIEVWLKER 1274 (1306)
Q Consensus 1255 pd--~Lasgs~Dg~I~IWd~~t 1274 (1306)
+- .+++++.||.|-+|+.+.
T Consensus 250 ~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 250 QHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hhheeeeeccCCCeEEEEeccc
Confidence 54 899999999999999874
No 318
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.07 E-value=0.00019 Score=77.34 Aligned_cols=223 Identities=10% Similarity=-0.055 Sum_probs=139.5
Q ss_pred cEEEEEeCCCcEEEEeCCCc---eEEcccCCCCEEEE---EEeCCEEEEEECCCcEEEEeCCCCccceEEEEcccCc--c
Q 000744 1009 KALMNLSSVNATELWHCNEV---TELDSSTNGEVLSL---IHLKGRVLSSHSDGTIKMWDSGKRVLRLIQEVREHTR--A 1080 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~---~~i~~~H~~~V~sl---~fspd~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~--~ 1080 (1306)
.+||.|+..|...+|...+. ..+-..|...|+-+ +-+.-.+..++.|.++++.+++.+..+ +..|.. .
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~----~~~h~~~~~ 160 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK----FAVHNQNLT 160 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc----ceeeccccc
Confidence 68999999999999998742 22223444444322 222236788899999999999866212 223433 3
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCC
Q 000744 1081 VTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKH 1160 (1306)
Q Consensus 1081 V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~ 1160 (1306)
+.++.+++|++++++.++...|..|.+.......+.... + -..|+.
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~--------a-------~t~D~g------------------- 206 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYE--------A-------PTSDHG------------------- 206 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEe--------c-------ccCCCc-------------------
Confidence 889999999999999999999999998875322222110 0 111221
Q ss_pred eEEEEEeC--CEEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeCCc---EEEEEEecCCCEEEEEECC
Q 000744 1161 VKSLVMTG--DKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGL---LFAGGSSVDGTAGKVFSIS 1234 (1306)
Q Consensus 1161 V~sl~~s~--d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~---~llas~s~Dg~~I~IWD~~ 1234 (1306)
.+.+|+. ..+++++.||++.|||++.......+... .-..|. .++.+.|++.+ +++.+- .-+ .+.+-|++
T Consensus 207 -F~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ss-trp~hnGa~R~c~Fsl~g~lDLLf~sE-hfs-~~hv~D~R 282 (344)
T KOG4532|consen 207 -FYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISS-TRPHHNGAFRVCRFSLYGLLDLLFISE-HFS-RVHVVDTR 282 (344)
T ss_pred -eeeeeccCcceEEEEecCCcEEEEEecccccchhhhcc-cCCCCCCceEEEEecCCCcceEEEEec-Ccc-eEEEEEcc
Confidence 2334442 26999999999999999985433322211 223466 99999998443 444443 233 79999999
Q ss_pred CCceEEEEe--------cC-CCEEEEEEcCc--EEEEEECCCcEEEEECCC
Q 000744 1235 SKTAVGSFT--------TG-IDIQHLAVNSD--FIFTATKCGTIEVWLKER 1274 (1306)
Q Consensus 1235 t~~~l~~l~--------~~-~~V~sla~spd--~Lasgs~Dg~I~IWd~~t 1274 (1306)
++.-...+. +. ..|+.-.|+.+ .+.+.+++ .+.=|++.+
T Consensus 283 ~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 283 NYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS 332 (344)
T ss_pred cCceeeEEecCccccccccccccccccccCCCcccccccch-hhheeeccc
Confidence 986544442 22 23777777665 44444433 344555544
No 319
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.05 E-value=0.0012 Score=74.55 Aligned_cols=215 Identities=11% Similarity=0.109 Sum_probs=126.4
Q ss_pred CCcEEEEeCCCC--ccceEEEEcccCccEEEEEEcCCCCEEEEEeCC---CcEEEEEcCC--CceeEEEeec-CCCCeEE
Q 000744 1055 DGTIKMWDSGKR--VLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLD---KTIRVWSIKP--EEIHCLQVHN-VKEAVHE 1126 (1306)
Q Consensus 1055 Dg~I~vWd~~t~--~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~D---gtI~VWdi~~--~~~~~i~~~~-~~~~V~s 1126 (1306)
+.-|.+|++.+. ....+.. -.+.+.++-++|+|+++.|+++-.+ |.|-.|.+.. |.+..+.... ...+.+.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~-v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~y 93 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQL-VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCY 93 (346)
T ss_pred CCceEEEEEeCcccccchhhh-ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeE
Confidence 467999999743 2222222 2566788999999999999998765 6666666654 3332222211 1111122
Q ss_pred EEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCCEEEEEE-CCCcEEEEECCC-CceeE---EecCcc---
Q 000744 1127 LTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGDKLYCGC-SGYSIQEVDLGN-LTSTT---FYAGTK--- 1198 (1306)
Q Consensus 1127 l~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs-~Dg~I~iwDl~~-~~~~~---~~~~~~--- 1198 (1306)
++ ++++|+ +++++. .-|.|.++-++. |.... ......
T Consensus 94 vs-------vd~~g~----------------------------~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p 138 (346)
T COG2706 94 VS-------VDEDGR----------------------------FVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGP 138 (346)
T ss_pred EE-------ECCCCC----------------------------EEEEEEccCceEEEEEcccCCccccceeeeecCCCCC
Confidence 22 455554 344333 357788887765 32221 111000
Q ss_pred cccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEE----EEecCCCEEEEEEcCc--EEEEEE-CCCcEEEE
Q 000744 1199 KLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVG----SFTTGIDIQHLAVNSD--FIFTAT-KCGTIEVW 1270 (1306)
Q Consensus 1199 ~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~----~l~~~~~V~sla~spd--~Lasgs-~Dg~I~IW 1270 (1306)
.-.... -+.+..+.|++.++++.+..-..|.+|++..|++.. .++.+..-..|.|+|+ +.++.+ -+++|-+|
T Consensus 139 ~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~ 218 (346)
T COG2706 139 HERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVL 218 (346)
T ss_pred CccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEE
Confidence 000011 377888999987777764322259999999876533 2345667899999999 555444 67999999
Q ss_pred ECCCC-eEEEEEe---cccCCC-CCCCeEEEEEcCCCCcc
Q 000744 1271 LKERV-TRVASVK---ANNSGG-GHAKITCLGTGVDGHPY 1305 (1306)
Q Consensus 1271 d~~tg-~~l~~l~---~~~~~~-~~~~V~slafSpdg~~L 1305 (1306)
..... ..+..++ ..+.+. +..+.-.+..+|||++|
T Consensus 219 ~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFL 258 (346)
T COG2706 219 EYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFL 258 (346)
T ss_pred EEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEE
Confidence 98863 2233332 211111 23667788899999986
No 320
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.04 E-value=1.3e-05 Score=85.75 Aligned_cols=143 Identities=16% Similarity=0.215 Sum_probs=99.3
Q ss_pred cEEEEeCCCceEEcccC--CCCEEEEEEeCC---EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcC-CCCE
Q 000744 1019 ATELWHCNEVTELDSST--NGEVLSLIHLKG---RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPS-SGDK 1092 (1306)
Q Consensus 1019 ~I~IWd~~~~~~i~~~H--~~~V~sl~fspd---~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fsp-dg~~ 1092 (1306)
..++|+++........+ ...|++++-+|. .+++|+.||.+.+||.+... -+...++.|+.+|+-+-|+| ++..
T Consensus 160 ~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~-~p~S~l~ahk~~i~eV~FHpk~p~~ 238 (319)
T KOG4714|consen 160 NFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA-MPVSLLKAHKAEIWEVHFHPKNPEH 238 (319)
T ss_pred ceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEccccc-chHHHHHHhhhhhhheeccCCCchh
Confidence 34566666443333333 334999999883 88999999999999998762 46667889999999999999 7889
Q ss_pred EEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCC----EEE----eccCCCeEEE
Q 000744 1093 LYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGA----IKH----INFNKHVKSL 1164 (1306)
Q Consensus 1093 L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~----~~l----~~~~~~V~sl 1164 (1306)
|++++.||.+-.||..+. .+. +++....+..|-.... +.+ -+....|+++
T Consensus 239 Lft~sedGslw~wdas~~---~l~-------------------i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~Sinsf 296 (319)
T KOG4714|consen 239 LFTCSEDGSLWHWDASTT---FLS-------------------ISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSF 296 (319)
T ss_pred eeEecCCCcEEEEcCCCc---eEE-------------------ecCccccccccccCCcccceEeeeccccccceeeeee
Confidence 999999999999998763 111 1111122222221111 111 1234568888
Q ss_pred EEeCCEEEEEECCCcEEEEE
Q 000744 1165 VMTGDKLYCGCSGYSIQEVD 1184 (1306)
Q Consensus 1165 ~~s~d~L~sgs~Dg~I~iwD 1184 (1306)
.+.+..+++|+.-+.|++++
T Consensus 297 DV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 297 DVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred eccCceEEeccccceEEEec
Confidence 88899999999999998875
No 321
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.04 E-value=5.1e-06 Score=93.00 Aligned_cols=65 Identities=20% Similarity=0.379 Sum_probs=48.0
Q ss_pred CcccCcccccc-cCCcE----EcCCCCcccHHHHHHHHHcCCCCCCCCCCccCCCCC---CCccHHHHHHHHH
Q 000744 342 KDFVCPITGQI-FNDPV----TLETGQTYERKAIQEWLKRGNTTCPITRQPLCSNSL---PKTNYVLKRLITS 406 (1306)
Q Consensus 342 ~~~~CpIc~~l-~~dPv----~~~cGhtfc~~cI~~~~~~~~~~CP~c~~~l~~~~l---~~~N~~L~~li~~ 406 (1306)
++..||+|+.- ...|- +.+|||+||..|+...|..+...||.|+..+....+ ..++..+.+-|+.
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F~D~~vekEV~i 74 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLFEDPTVEKEVDI 74 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccccccHHHHHHHHH
Confidence 45789999982 22342 337999999999999998888899999999887663 1256655555543
No 322
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.03 E-value=3.8e-06 Score=67.31 Aligned_cols=41 Identities=22% Similarity=0.473 Sum_probs=35.2
Q ss_pred cCccccccc---CCcEEcCCCCcccHHHHHHHHHcCCCCCCCCCC
Q 000744 345 VCPITGQIF---NDPVTLETGQTYERKAIQEWLKRGNTTCPITRQ 386 (1306)
Q Consensus 345 ~CpIc~~l~---~dPv~~~cGhtfc~~cI~~~~~~~~~~CP~c~~ 386 (1306)
.|+||.+.+ ..|++++|||+||..|+.... .....||.|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 489999988 457899999999999999988 44678999985
No 323
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=0.00011 Score=83.01 Aligned_cols=235 Identities=11% Similarity=0.083 Sum_probs=136.8
Q ss_pred EcccCCCCEEEEEEeCC---EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCC-CCEEEEEeCCCcEEEEE
Q 000744 1031 LDSSTNGEVLSLIHLKG---RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSS-GDKLYSGSLDKTIRVWS 1106 (1306)
Q Consensus 1031 i~~~H~~~V~sl~fspd---~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspd-g~~L~Sgs~DgtI~VWd 1106 (1306)
+..+|...|.+++|+|. .+..++.+.+|+|.|+.+. .++..+..| ..+++++|.-| .++++.|-..|.|.|||
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~--~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD 264 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS--CVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYD 264 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccc--eeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEE
Confidence 55677888999999983 7899999999999999998 777888777 78999999885 46888999999999999
Q ss_pred cCCCc-eeEEEee-cCCCCeEEEEe-C-------CcEEEEEcCCCeEEEEEecCCEEEe------ccCCCeEEEEEeC--
Q 000744 1107 IKPEE-IHCLQVH-NVKEAVHELTA-N-------AEIACFVSPATGVKVYNWSGAIKHI------NFNKHVKSLVMTG-- 1168 (1306)
Q Consensus 1107 i~~~~-~~~i~~~-~~~~~V~sl~~-~-------~~~v~~s~dg~~I~i~~~~~~~~l~------~~~~~V~sl~~s~-- 1168 (1306)
++..+ ..+...- -...+|..++. . +.++++...+ +..|........| +..+...++.+.+
T Consensus 265 ~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~s 342 (463)
T KOG1645|consen 265 MRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVS 342 (463)
T ss_pred ccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCcc
Confidence 99865 1111111 12345665554 1 1222222211 1222222221111 2244555555554
Q ss_pred CEEEEEECC-C---cEE----EEECCCCceeEE----ecCcccccCCccEEEE-EEeCCcEEEEEEecCCCEEEEEECCC
Q 000744 1169 DKLYCGCSG-Y---SIQ----EVDLGNLTSTTF----YAGTKKLLGKQTIHSL-HMHNGLLFAGGSSVDGTAGKVFSISS 1235 (1306)
Q Consensus 1169 d~L~sgs~D-g---~I~----iwDl~~~~~~~~----~~~~~~l~gh~~I~sl-~~s~~~~llas~s~Dg~~I~IWD~~t 1235 (1306)
++++..... . +++ --|-.+|..+-. +.+....+-++ -..+ +.-++..+++.+ .+.+.+.+||..+
T Consensus 343 nh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t-~~ai~~~~~nn~iv~~g-d~tn~lil~D~~s 420 (463)
T KOG1645|consen 343 NHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLST-TQAIRAVEDNNYIVVVG-DSTNELILQDPHS 420 (463)
T ss_pred ceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCccccccc-ccceeccccccEEEEec-CCcceeEEeccch
Confidence 444333322 0 010 112222322211 00111111111 0011 112334444444 3556899999999
Q ss_pred CceEEEEecCCCEEEEEEcCc----EEEEEECCCcEEEEECC
Q 000744 1236 KTAVGSFTTGIDIQHLAVNSD----FIFTATKCGTIEVWLKE 1273 (1306)
Q Consensus 1236 ~~~l~~l~~~~~V~sla~spd----~Lasgs~Dg~I~IWd~~ 1273 (1306)
++.+.++.-..+|..++.... +|++-. |..++||..+
T Consensus 421 ~evvQ~l~~~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 421 FEVVQTLALSEPVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred hheeeecccCcceeecceeecCCcchhhhee-cceEEEEecC
Confidence 999999998888888776432 666665 5578888765
No 324
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.02 E-value=0.00069 Score=73.11 Aligned_cols=215 Identities=7% Similarity=0.017 Sum_probs=129.9
Q ss_pred CEEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeE
Q 000744 1047 GRVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSS-GDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVH 1125 (1306)
Q Consensus 1047 d~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspd-g~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~ 1125 (1306)
++|+.|+.-|...+|...+.+ ...+....|...|+-+.=..+ .-.+..++.|.++++.++..+..+...... .-.+.
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~-~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~-~~~~n 162 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTND-GHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQ-NLTQN 162 (344)
T ss_pred cEEEeccccceeeeecccCcc-cceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecc-cccee
Confidence 389999999999999998763 233344445554433221112 234667888999999988775321111111 01133
Q ss_pred EEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCCEEEEEECCCcEEEEECCCCc--eeEEecCcccccCC
Q 000744 1126 ELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGDKLYCGCSGYSIQEVDLGNLT--STTFYAGTKKLLGK 1203 (1306)
Q Consensus 1126 sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~--~~~~~~~~~~l~gh 1203 (1306)
+++ +++|++ ++++.+....|..|.+.... .+.++.... ..
T Consensus 163 s~~-------~snd~~----------------------------~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t--~D- 204 (344)
T KOG4532|consen 163 SLH-------YSNDPS----------------------------WGSSVGDSRRVFRYAIDDESEYIENIYEAPT--SD- 204 (344)
T ss_pred eeE-------EcCCCc----------------------------eEEEecCCCcceEEEeCCccceeeeeEeccc--CC-
Confidence 333 555554 67777777888888877532 222222111 11
Q ss_pred ccEEEEEEeCCcEEEEEEecCCCEEEEEECCCCce-EEEE----e-cCCCEEEEEEcCc----EEEEEECCCcEEEEECC
Q 000744 1204 QTIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTA-VGSF----T-TGIDIQHLAVNSD----FIFTATKCGTIEVWLKE 1273 (1306)
Q Consensus 1204 ~~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~-l~~l----~-~~~~V~sla~spd----~Lasgs~Dg~I~IWd~~ 1273 (1306)
.-.+..|+......+.+..|| ++.|||++.... .... + |.+.|..+.|++. +|+..-.-+.+.+.|++
T Consensus 205 -~gF~~S~s~~~~~FAv~~Qdg-~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R 282 (344)
T KOG4532|consen 205 -HGFYNSFSENDLQFAVVFQDG-TCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTR 282 (344)
T ss_pred -CceeeeeccCcceEEEEecCC-cEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcc
Confidence 335677886555556666898 899999987432 2222 2 4566999999964 55555566899999999
Q ss_pred CCeEEEEEeccc--CCCCC-CCeEEEEEcCCCC
Q 000744 1274 RVTRVASVKANN--SGGGH-AKITCLGTGVDGH 1303 (1306)
Q Consensus 1274 tg~~l~~l~~~~--~~~~~-~~V~slafSpdg~ 1303 (1306)
++...+.+.... ...|. ..|+.-.|+.++.
T Consensus 283 ~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~ 315 (344)
T KOG4532|consen 283 NYVNHQVIVIPDDVERKHNTQHIFGTNFNNENE 315 (344)
T ss_pred cCceeeEEecCccccccccccccccccccCCCc
Confidence 988777665310 00122 3377777776654
No 325
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=98.02 E-value=0.00016 Score=89.07 Aligned_cols=302 Identities=16% Similarity=0.134 Sum_probs=190.7
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHhhhcCCCcccccccccccchHHHHHHHhcCCcHHHHHHHHHHHHHHhccCcc--cc
Q 000744 493 YVTCLCTSENLQECETAVLAIARLWKESKGDPGVHAYLLKPTIINGFAEILSASLSREVLRTSVYILSELMVADES--VG 570 (1306)
Q Consensus 493 ~l~~Ll~s~~~~~~e~Av~~i~~L~~~~~~~~~~~~~i~~~~~I~~Lv~~L~~~~~~~~~e~Av~~L~~L~s~~~~--~~ 570 (1306)
-+..+|.+.+...|-+|+.-|-.++..+. .++..+-+-|.|+-||.+|.+. ..+++.+|..+|-||+..... ||
T Consensus 237 e~i~mL~~q~~~~qsnaaaylQHlcfgd~---~ik~~vrqlggI~kLv~Ll~~~-~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 237 EVISMLMSQDPSVQSNAAAYLQHLCFGDN---KIKSRVRQLGGIPKLVALLDHR-NDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred HHHHHHhccChhhhHHHHHHHHHHHhhhH---HHHHHHHHhccHHHHHHHhcCC-cHHHHHHHHHHHHhhhcccCCcccc
Confidence 34446778888899999999999988665 5666777899999999999998 999999999999999976655 99
Q ss_pred ccccccCCchHHHHHHHhc-Ch----HHHHHHHhccCCC--HHHHhhCCchHHHHHHhhcCCc---ccc------chhcc
Q 000744 571 DILTSVDSDFDCLAALLKN-GL----GEAAVLIYQLRPA--FAQLSAHEFIPSLVQLVLNKTE---EFD------ELQFV 634 (1306)
Q Consensus 571 ~~I~~~~~~i~~Lv~lLk~-g~----~~Aa~aL~~L~~~--~~~i~~~g~i~~Lv~ll~~g~~---~~~------~~~~~ 634 (1306)
-.|.+ .++|+.||.+||. +. ++.+.+|+||+.+ ....+...+++.|-+-+=.... ... ...+.
T Consensus 313 lai~~-~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 313 LAIKE-LNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred hhhhh-cCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceee
Confidence 99998 8999999999996 33 7899999999995 3333334455555443322210 000 00000
Q ss_pred cCchHHHHHHHHHHHccCCCCCchhhhhHhhc-CCCHHHHHhhc-----------CChhHHHHHHHHHHhhhhcc--chh
Q 000744 635 MEPKDAAIEMLEQILMGGDKKSRSITALSLIS-ANGIPALIKCL-----------DRVEVRRSIVSILLCCMHAD--KSC 700 (1306)
Q Consensus 635 ~~~k~aa~~lL~~l~~~~~~~~~~~n~~~i~~-~g~i~~Lv~~l-----------~~~~~~~~~~~~L~~~~~~~--~~~ 700 (1306)
. =++..|.++... ..+-+.++-+ .|.|..|+-.+ ..+|..+..+.-|.--+++. ...
T Consensus 392 ~----n~tgcLRNlSs~-----~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~ 462 (717)
T KOG1048|consen 392 R----NVTGCLRNLSSA-----GQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKY 462 (717)
T ss_pred e----hhhhhhccccch-----hHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhh
Confidence 0 123333333221 2455555554 45568888776 13444333333221111100 111
Q ss_pred HHHHHHh----------------------------------cccch----------h----hhhhh-cCCchhHhHHHHH
Q 000744 701 KTLIAKR----------------------------------IELSH----------V----LDLFH-DGNDSVRGICINF 731 (1306)
Q Consensus 701 r~~i~~~----------------------------------~~~~~----------l----~~ll~-~g~~~~k~~a~~~ 731 (1306)
+..++.. ...+| + +-|+. +.++.--|+++.+
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGa 542 (717)
T KOG1048|consen 463 RQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGA 542 (717)
T ss_pred hhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhh
Confidence 1111110 00111 1 12222 2233335566666
Q ss_pred HHHHHhcchhhhHHHHHHHh-hhcCCcchHHHHHHHhhcCCCcchhhHHHHHHhhhcccCCccccccHHHHHHHHHHHHh
Q 000744 732 LSELVLLNRRTFSNQILQVI-RDEGSFSTMHTFLVYLQMAPMEQQPATASLLLQLDLLVEPRKMSMYREEAVEALIEALR 810 (1306)
Q Consensus 732 L~~L~~~~~~~~~~~~l~~i-~~~g~~~~m~~ll~~l~~~~~~~~~~~A~~l~~l~~l~~~~~~~~~reeai~~l~~~l~ 810 (1306)
|-.|.-.+. ....-+...+ .+|-+.+. ++.+||.......-.+|++|.+|.. +++...+.-.+||+-||++|.
T Consensus 543 LQNltA~~~-~~~~~~~~~v~~kekgl~~---l~~ll~~~~~~vv~s~a~~LrNls~--d~rnk~ligk~a~~~lv~~Lp 616 (717)
T KOG1048|consen 543 LQNLTAGLW-TWSEYMRGAVFRKEKGLPP---LVELLRNDDSDVVRSAAGALRNLSR--DIRNKELIGKYAIPDLVRCLP 616 (717)
T ss_pred HhhhhccCC-cchhHHHhhhhhhccCccH---HHHHHhcCCchHHHHHHHHHhhhcc--CchhhhhhhcchHHHHHHhCc
Confidence 655543333 4445556666 78888887 7888899999999999999988875 666555556999999999999
Q ss_pred cCCC
Q 000744 811 RKDF 814 (1306)
Q Consensus 811 ~~~~ 814 (1306)
....
T Consensus 617 ~~~~ 620 (717)
T KOG1048|consen 617 GSGP 620 (717)
T ss_pred CCCC
Confidence 9875
No 326
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.01 E-value=0.0012 Score=77.00 Aligned_cols=274 Identities=11% Similarity=0.117 Sum_probs=160.3
Q ss_pred cEEEEEeCCCcEEEEeCCCceEEcccCCCCEEEEEEeCC--EEEEEECCC---------------cEEEEeCCCCccceE
Q 000744 1009 KALMNLSSVNATELWHCNEVTELDSSTNGEVLSLIHLKG--RVLSSHSDG---------------TIKMWDSGKRVLRLI 1071 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~~~i~~~H~~~V~sl~fspd--~LaSgs~Dg---------------~I~vWd~~t~~~~~i 1071 (1306)
.+|++... .-|.+|.....-.+.......|..+.|+|+ +|.+-+..+ .+.+||+.+| ..+
T Consensus 45 ~~l~~~~~-~~V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg--~iv 121 (561)
T COG5354 45 TYLFSEHA-AGVECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASG--MIV 121 (561)
T ss_pred hheehhhc-cceEEccccchhheeeeecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCc--eeE
Confidence 56666655 558889876543444444456899999985 777765544 4999999999 778
Q ss_pred EEEcccCcc--EE-EEEEcCCCCEEEEEeCCCcEEEEEcCCCcee--EEEeecCCCCeEEEEeCCc-----EEEEEcCC-
Q 000744 1072 QEVREHTRA--VT-CLYVPSSGDKLYSGSLDKTIRVWSIKPEEIH--CLQVHNVKEAVHELTANAE-----IACFVSPA- 1140 (1306)
Q Consensus 1072 ~~l~~H~~~--V~-sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~--~i~~~~~~~~V~sl~~~~~-----~v~~s~dg- 1140 (1306)
..+.+-..+ .+ -+.|+-+..+++=.. ...+.|+++ ++... ...... ...|....+.+. ++.|.|.-
T Consensus 122 ~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~-t~n~~~~p~~~lr-~~gi~dFsisP~~n~~~la~~tPEk~ 198 (561)
T COG5354 122 FSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEI-TDNIEEHPFKNLR-PVGILDFSISPEGNHDELAYWTPEKL 198 (561)
T ss_pred eeccccCCcccccceeeeeecchhhhhhc-cCeEEEEec-CCccccCchhhcc-ccceeeEEecCCCCCceEEEEccccC
Confidence 888776666 56 678888877766442 346899997 43211 111111 244555554222 45555532
Q ss_pred ---CeEEEEEecCCEEEecc---CCCeEEEEEe--CCEEEE----EE-------CCCcEEEEECCCCceeEEecCccccc
Q 000744 1141 ---TGVKVYNWSGAIKHINF---NKHVKSLVMT--GDKLYC----GC-------SGYSIQEVDLGNLTSTTFYAGTKKLL 1201 (1306)
Q Consensus 1141 ---~~I~i~~~~~~~~l~~~---~~~V~sl~~s--~d~L~s----gs-------~Dg~I~iwDl~~~~~~~~~~~~~~l~ 1201 (1306)
..+++|....+..+..+ +-.=..+.|. ++++++ -. ....++++++....+... .
T Consensus 199 ~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~------~- 271 (561)
T COG5354 199 NKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVE------K- 271 (561)
T ss_pred CCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccccee------c-
Confidence 13445554422111111 1111123333 222111 11 134577777764332211 1
Q ss_pred CCc-cEEEEEEeC--CcEEEEEEecCCCEEEEEECCCCceEEEEecCCCEEEEEEcCc--EEEEEECC---CcEEEEECC
Q 000744 1202 GKQ-TIHSLHMHN--GLLFAGGSSVDGTAGKVFSISSKTAVGSFTTGIDIQHLAVNSD--FIFTATKC---GTIEVWLKE 1273 (1306)
Q Consensus 1202 gh~-~I~sl~~s~--~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~~~~V~sla~spd--~Lasgs~D---g~I~IWd~~ 1273 (1306)
+-. +|....|.| ++.-+++|-++. ++.++|++.. ....+. .+.=+.+.|+|. +++.++-| |.|-|||..
T Consensus 272 ~~~~pVhdf~W~p~S~~F~vi~g~~pa-~~s~~~lr~N-l~~~~P-e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~ 348 (561)
T COG5354 272 DLKDPVHDFTWEPLSSRFAVISGYMPA-SVSVFDLRGN-LRFYFP-EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPA 348 (561)
T ss_pred cccccceeeeecccCCceeEEeccccc-ceeecccccc-eEEecC-CcccccccccCcccEEEEecCCccccceEEeccC
Confidence 222 999999974 344445555666 7999999866 444443 333456678887 77777655 789999987
Q ss_pred CCeEEE-EEecccCCCCCCCeEEEEEcCCCCcc
Q 000744 1274 RVTRVA-SVKANNSGGGHAKITCLGTGVDGHPY 1305 (1306)
Q Consensus 1274 tg~~l~-~l~~~~~~~~~~~V~slafSpdg~~L 1305 (1306)
....+. .+.+ ..-+-+.|+|||+++
T Consensus 349 ~rf~~~~~~~~-------~n~s~~~wspd~qF~ 374 (561)
T COG5354 349 GRFKVAGAFNG-------LNTSYCDWSPDGQFY 374 (561)
T ss_pred CceEEEEEeec-------CCceEeeccCCceEE
Confidence 665444 6653 134556899999875
No 327
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=0.00037 Score=77.42 Aligned_cols=279 Identities=15% Similarity=0.167 Sum_probs=183.9
Q ss_pred cccchHHHHHHH--hcCCcHHHHHHHHHHHHHHhccCccccccccccCCchHHHHHHHhcChHHHHHHHhccCC------
Q 000744 532 KPTIINGFAEIL--SASLSREVLRTSVYILSELMVADESVGDILTSVDSDFDCLAALLKNGLGEAAVLIYQLRP------ 603 (1306)
Q Consensus 532 ~~~~I~~Lv~~L--~~~~~~~~~e~Av~~L~~L~s~~~~~~~~I~~~~~~i~~Lv~lLk~g~~~Aa~aL~~L~~------ 603 (1306)
+.|+.+.++..+ .++.+..+.-.+..+|..|....+. +- ...+...+|.+|.....++-.++..+..
T Consensus 102 ~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~qpd----l~-da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~ 176 (461)
T KOG4199|consen 102 KNGAHDALITLLELAESPNESVLKKSLEAINSLTHKQPD----LF-DAEAMAVVLKLLALKVESEEVTLLTLQWLQKACI 176 (461)
T ss_pred cCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCCcc----hh-ccccHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 445555554433 3444667777888888877544432 22 2678888999998877666666665522
Q ss_pred ----CHHHHhhCCchHHHHHHhh-cCCc-cccchhcccCchHHHHHHHHHHHccCCCCC----chhhhhHhhcCCCHHHH
Q 000744 604 ----AFAQLSAHEFIPSLVQLVL-NKTE-EFDELQFVMEPKDAAIEMLEQILMGGDKKS----RSITALSLISANGIPAL 673 (1306)
Q Consensus 604 ----~~~~i~~~g~i~~Lv~ll~-~g~~-~~~~~~~~~~~k~aa~~lL~~l~~~~~~~~----~~~n~~~i~~~g~i~~L 673 (1306)
|+-.+.+.++.|.+.+.|. .|.. ..+ ++...|-.|++-.|... ..+++..|+.+|++.+|
T Consensus 177 ~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VR----------el~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L 246 (461)
T KOG4199|consen 177 MHEVNRQLFMELKILELILQVLNREGKTRTVR----------ELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTAL 246 (461)
T ss_pred HhHHHHHHHHHhhHHHHHHHHHcccCccHHHH----------HHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHH
Confidence 8889999999999996654 4442 111 45556666665554443 35889999999999999
Q ss_pred Hhhc--CC-hhHHHHHHHHHHhhhhccchhHHHHHHhcccchhhhhhhc-CCchhHhHHHHHHHHHHhcchhhhHHHHHH
Q 000744 674 IKCL--DR-VEVRRSIVSILLCCMHADKSCKTLIAKRIELSHVLDLFHD-GNDSVRGICINFLSELVLLNRRTFSNQILQ 749 (1306)
Q Consensus 674 v~~l--~~-~~~~~~~~~~L~~~~~~~~~~r~~i~~~~~~~~l~~ll~~-g~~~~k~~a~~~L~~L~~~~~~~~~~~~l~ 749 (1306)
++.+ +- +.--..+-..| .-+.-++.--..|++.||+..|++++-+ +.+..|+-+-..|.-|..+-. ...+-.
T Consensus 247 ~Eal~A~~dp~~L~~l~~tl-~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG---~DsvKs 322 (461)
T KOG4199|consen 247 TEALQAGIDPDSLVSLSTTL-KALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG---SDSVKS 322 (461)
T ss_pred HHHHHccCCccHHHHHHHHH-HHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC---CCchHH
Confidence 9999 22 22222222222 2334455556789999999999999987 667778777777766644432 234557
Q ss_pred HhhhcCCcchHHHHHHHhhcCCCcchhhHHHHHHhhhcccCCc-cccccHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHh
Q 000744 750 VIRDEGSFSTMHTFLVYLQMAPMEQQPATASLLLQLDLLVEPR-KMSMYREEAVEALIEALRRKDFP-NSQMMALDALLS 827 (1306)
Q Consensus 750 ~i~~~g~~~~m~~ll~~l~~~~~~~~~~~A~~l~~l~~l~~~~-~~~~~reeai~~l~~~l~~~~~~-~~q~~aa~~l~~ 827 (1306)
.|.+.||.+.+.+|+ +|.....+.-..+.+..-.-.|-.|. -..++..|+-+..+++|+..-.- .+|.+|+-.+.|
T Consensus 323 ~IV~~gg~~~ii~l~--~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRN 400 (461)
T KOG4199|consen 323 TIVEKGGLDKIITLA--LRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRN 400 (461)
T ss_pred HHHHhcChHHHHHHH--HHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 889999998877776 44444444333333333333455663 34566778888899999988432 588889999999
Q ss_pred ccce
Q 000744 828 LTGR 831 (1306)
Q Consensus 828 l~g~ 831 (1306)
+.-|
T Consensus 401 iv~r 404 (461)
T KOG4199|consen 401 IVVR 404 (461)
T ss_pred HHHh
Confidence 8544
No 328
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=0.00084 Score=79.25 Aligned_cols=273 Identities=8% Similarity=-0.002 Sum_probs=161.8
Q ss_pred CcEEEEeCCC--ceEEcccC---CCCEEEEEEeCC-EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCC
Q 000744 1018 NATELWHCNE--VTELDSST---NGEVLSLIHLKG-RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGD 1091 (1306)
Q Consensus 1018 g~I~IWd~~~--~~~i~~~H---~~~V~sl~fspd-~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~ 1091 (1306)
.-+.+|+... .......+ ..++...+++++ .++..+.++.++|++..++ ..+.+...- .++++.|+|-|+
T Consensus 11 e~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~~~~v~i~~~~~~--~~~lt~~~~--~~~~L~fSP~g~ 86 (566)
T KOG2315|consen 11 EGFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSDNQVVKVFEIATL--KVVLCVELK--KTYDLLFSPKGN 86 (566)
T ss_pred ceeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEcCCeEEEEEccCC--cEEEEeccc--eeeeeeeccccc
Confidence 3577787643 22222333 344677788886 8888889999999999887 444444322 789999999998
Q ss_pred EEEEE-----eCC-----CcEEEEEcCCCcee-EEEeecCCCCeEEEEe-CCcEEEEEcCCCeEEEEEecCCEEE--ecc
Q 000744 1092 KLYSG-----SLD-----KTIRVWSIKPEEIH-CLQVHNVKEAVHELTA-NAEIACFVSPATGVKVYNWSGAIKH--INF 1157 (1306)
Q Consensus 1092 ~L~Sg-----s~D-----gtI~VWdi~~~~~~-~i~~~~~~~~V~sl~~-~~~~v~~s~dg~~I~i~~~~~~~~l--~~~ 1157 (1306)
+|.+= ..| ..+++|++.++... .++.....+ ++..| .+..++.---++.+.+++.++.... .=|
T Consensus 87 yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~--W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~ 164 (566)
T KOG2315|consen 87 YLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNG--WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLS 164 (566)
T ss_pred ccccccccccccCCCCCCCceeeeeeccceehhheehhhhcC--cccccccchhhhhhhhcceEEEEecCCccceeeeee
Confidence 88752 223 34679999885311 111111122 34443 1112222222334556655532111 125
Q ss_pred CCCeEEEEEeCC----EEE-----EEECCCcEEEEECCCCceeEEecCcccccCCccEEEEEEeC--C-cEEEEEEecCC
Q 000744 1158 NKHVKSLVMTGD----KLY-----CGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHN--G-LLFAGGSSVDG 1225 (1306)
Q Consensus 1158 ~~~V~sl~~s~d----~L~-----sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~--~-~~llas~s~Dg 1225 (1306)
...|+.+.++|. +++ .++.-+.+++|............. +.+... .=..+.|++ . -+++++...|.
T Consensus 165 ~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~-ksFFka-dkvqm~WN~~gt~LLvLastdVDk 242 (566)
T KOG2315|consen 165 VSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVAN-KSFFKA-DKVQMKWNKLGTALLVLASTDVDK 242 (566)
T ss_pred ccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhh-cccccc-ceeEEEeccCCceEEEEEEEeecC
Confidence 678888888865 332 244556799998763222111100 000000 122345552 2 23444444443
Q ss_pred --------CEEEEEECCCCceEEEEecCCCEEEEEEcCc----EEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCe
Q 000744 1226 --------TAGKVFSISSKTAVGSFTTGIDIQHLAVNSD----FIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKI 1293 (1306)
Q Consensus 1226 --------~~I~IWD~~t~~~l~~l~~~~~V~sla~spd----~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V 1293 (1306)
.++++.++....+...+...++|.++.|+++ -++-|-.--++.|+|++ ++++..+.. ++=
T Consensus 243 tn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~e-------gpR 314 (566)
T KOG2315|consen 243 TNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPE-------GPR 314 (566)
T ss_pred CCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCC-------CCc
Confidence 2788999886677777888999999999998 34445566899999996 567776642 355
Q ss_pred EEEEEcCCCCccC
Q 000744 1294 TCLGTGVDGHPYK 1306 (1306)
Q Consensus 1294 ~slafSpdg~~La 1306 (1306)
+++-|+|.|++|+
T Consensus 315 N~~~fnp~g~ii~ 327 (566)
T KOG2315|consen 315 NTAFFNPHGNIIL 327 (566)
T ss_pred cceEECCCCCEEE
Confidence 7889999999874
No 329
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.99 E-value=0.002 Score=86.63 Aligned_cols=240 Identities=11% Similarity=0.067 Sum_probs=133.4
Q ss_pred EEEEEeC--C-EEEEEECCCcEEEEeCCCCccceEEEEcc-c-------------CccEEEEEEcCCCCEEEEEe-CCCc
Q 000744 1040 LSLIHLK--G-RVLSSHSDGTIKMWDSGKRVLRLIQEVRE-H-------------TRAVTCLYVPSSGDKLYSGS-LDKT 1101 (1306)
Q Consensus 1040 ~sl~fsp--d-~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~-H-------------~~~V~sl~fspdg~~L~Sgs-~Dgt 1101 (1306)
..+++++ + .+++-+.++.|++||..+. .+..+.+ . -.....++++++++.|+.+. ..+.
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~---~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~ 647 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN---FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHA 647 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC---EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCce
Confidence 3466664 3 5666677888999998653 3333322 1 12357889998887665554 4567
Q ss_pred EEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeC--CE-EEEEECCC
Q 000744 1102 IRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTG--DK-LYCGCSGY 1178 (1306)
Q Consensus 1102 I~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~--d~-L~sgs~Dg 1178 (1306)
|+++|..++....+.... ..... .+|.. .+... .-.....+++++ +. +++.+.++
T Consensus 648 Ir~id~~~~~V~tlag~G----~~g~~---------~~gg~------~~~~~---~ln~P~gVa~dp~~g~LyVad~~~~ 705 (1057)
T PLN02919 648 LREIDFVNETVRTLAGNG----TKGSD---------YQGGK------KGTSQ---VLNSPWDVCFEPVNEKVYIAMAGQH 705 (1057)
T ss_pred EEEEecCCCEEEEEeccC----cccCC---------CCCCh------hhhHh---hcCCCeEEEEecCCCeEEEEECCCC
Confidence 899998776332222111 00000 00000 00000 012234667765 23 45566778
Q ss_pred cEEEEECCCCceeEEecCcc---cccCC-------ccEEEEEEeCCcE-EEEEEecCCCEEEEEECCCCceEEEEe----
Q 000744 1179 SIQEVDLGNLTSTTFYAGTK---KLLGK-------QTIHSLHMHNGLL-FAGGSSVDGTAGKVFSISSKTAVGSFT---- 1243 (1306)
Q Consensus 1179 ~I~iwDl~~~~~~~~~~~~~---~l~gh-------~~I~sl~~s~~~~-llas~s~Dg~~I~IWD~~t~~~l~~l~---- 1243 (1306)
.|++||..++... .+.+.. ...++ ...+.+++++++. +.++.+.++ .|++||+.++.......
T Consensus 706 ~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~-~Irv~D~~tg~~~~~~gg~~~ 783 (1057)
T PLN02919 706 QIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESS-SIRALDLKTGGSRLLAGGDPT 783 (1057)
T ss_pred eEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCC-eEEEEECCCCcEEEEEecccc
Confidence 8999998877543 222211 00010 1456789986653 444443344 89999998765321110
Q ss_pred --------c----------CCCEEEEEEcCc--EEEEEECCCcEEEEECCCCeEEEEEecccCC--------CCCCCeEE
Q 000744 1244 --------T----------GIDIQHLAVNSD--FIFTATKCGTIEVWLKERVTRVASVKANNSG--------GGHAKITC 1295 (1306)
Q Consensus 1244 --------~----------~~~V~sla~spd--~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~--------~~~~~V~s 1295 (1306)
+ .....+++++++ ++++-+.++.|++||..++........-..+ ..-.....
T Consensus 784 ~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~G 863 (1057)
T PLN02919 784 FSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAG 863 (1057)
T ss_pred cCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceE
Confidence 0 012468889887 7777778899999999887665433210000 01135789
Q ss_pred EEEcCCCCccC
Q 000744 1296 LGTGVDGHPYK 1306 (1306)
Q Consensus 1296 lafSpdg~~La 1306 (1306)
+++++||+++|
T Consensus 864 Iavd~dG~lyV 874 (1057)
T PLN02919 864 LALGENGRLFV 874 (1057)
T ss_pred EEEeCCCCEEE
Confidence 99999998653
No 330
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.94 E-value=0.0043 Score=66.97 Aligned_cols=106 Identities=11% Similarity=-0.017 Sum_probs=72.4
Q ss_pred cEEEEEeCCCcEEEEeCCCceEEccc-CCCCEEEEEE-eCCEEEEEECCCcEEEEeCCCCccceEEEEcccCccEE-EEE
Q 000744 1009 KALMNLSSVNATELWHCNEVTELDSS-TNGEVLSLIH-LKGRVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVT-CLY 1085 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~~~i~~~-H~~~V~sl~f-spd~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~-sl~ 1085 (1306)
.+++.||-.+.+.--|.++..-.... -...|.+-+. -.|+++.|.+.|.+++.+.++| ..+..+..-. .|. .-.
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tG--s~~w~f~~~~-~vk~~a~ 100 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTG--SQIWNFVILE-TVKVRAQ 100 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecch--hheeeeeehh-hhccceE
Confidence 57788888888888887765444322 1333433322 4679999999999999999999 5666554322 222 123
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeec
Q 000744 1086 VPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHN 1119 (1306)
Q Consensus 1086 fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~ 1119 (1306)
..+++..++.|+.|++....|.++. .|+...+
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~--~cVyksk 132 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTY--GCVYKSK 132 (354)
T ss_pred EcCCCceEEEecCCCcEEEeccccc--ceEEecc
Confidence 4468999999999999999999886 4444433
No 331
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.94 E-value=1.8e-05 Score=87.66 Aligned_cols=138 Identities=14% Similarity=0.204 Sum_probs=91.7
Q ss_pred CCeEEEEEe--CCEEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeC-CcEEEEEEecCCCEEEEEECC
Q 000744 1159 KHVKSLVMT--GDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHN-GLLFAGGSSVDGTAGKVFSIS 1234 (1306)
Q Consensus 1159 ~~V~sl~~s--~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~-~~~llas~s~Dg~~I~IWD~~ 1234 (1306)
+.|.++.|. .+.+..|+.+|.|..+|++.+..-.....+ ..-|. .|+++..-+ ++.++.+++.+| .|++||.+
T Consensus 253 sDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~--rlyh~Ssvtslq~Lq~s~q~LmaS~M~g-kikLyD~R 329 (425)
T KOG2695|consen 253 SDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ--RLYHDSSVTSLQILQFSQQKLMASDMTG-KIKLYDLR 329 (425)
T ss_pred hhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE--EEEcCcchhhhhhhccccceEeeccCcC-ceeEeeeh
Confidence 344444454 347889999999999999975221111111 11344 788887753 555555666898 79999998
Q ss_pred CCce---EEEEecCCC---EEEEEEcCc--EEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcC
Q 000744 1235 SKTA---VGSFTTGID---IQHLAVNSD--FIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGV 1300 (1306)
Q Consensus 1235 t~~~---l~~l~~~~~---V~sla~spd--~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSp 1300 (1306)
--++ +.++.+|.. -.-+-+++. .++++++|...+||.+..|+.+.+++. +.......+++++|+.
T Consensus 330 ~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf-~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 330 ATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF-PYSASEVDIPSVAFDS 402 (425)
T ss_pred hhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC-CCccccccccceehhc
Confidence 8777 777776543 112223444 899999999999999999999999874 1111224577888763
No 332
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=6.7e-05 Score=85.73 Aligned_cols=231 Identities=13% Similarity=0.034 Sum_probs=147.9
Q ss_pred cEEEEEeCCCcEEEEeCCCc-----eEEcccCCCCEEEEEEeCC--EEEEEEC-CCcEEEEeCCCCccceEEEEcccCcc
Q 000744 1009 KALMNLSSVNATELWHCNEV-----TELDSSTNGEVLSLIHLKG--RVLSSHS-DGTIKMWDSGKRVLRLIQEVREHTRA 1080 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~-----~~i~~~H~~~V~sl~fspd--~LaSgs~-Dg~I~vWd~~t~~~~~i~~l~~H~~~ 1080 (1306)
+++.+++.||.++.|.-... ......|-+.|.+++.+-+ .+.|++. |..++++|+.+-.......+..-.+.
T Consensus 21 ~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~ 100 (558)
T KOG0882|consen 21 KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGF 100 (558)
T ss_pred heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCc
Confidence 89999999999999987641 2223567888888888875 6677677 99999999976521111222222333
Q ss_pred EEEEEEcCCC----CEEEEEeCCCcEEEEEcCCCc-eeEEEeecCCCCeEEEEe--CCcEEEEEcCCCeEEEEEecCCE-
Q 000744 1081 VTCLYVPSSG----DKLYSGSLDKTIRVWSIKPEE-IHCLQVHNVKEAVHELTA--NAEIACFVSPATGVKVYNWSGAI- 1152 (1306)
Q Consensus 1081 V~sl~fspdg----~~L~Sgs~DgtI~VWdi~~~~-~~~i~~~~~~~~V~sl~~--~~~~v~~s~dg~~I~i~~~~~~~- 1152 (1306)
+..+. ..| ..-++.-.+|.|.|+|-.... ..+...--|..+|..+.+ ....+...+.+..|.-|+..+..
T Consensus 101 a~wv~--skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~q 178 (558)
T KOG0882|consen 101 AEWVT--SKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQ 178 (558)
T ss_pred eEEec--CCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCccc
Confidence 33322 223 223334457899999987653 223333336788888887 23333344444557777766421
Q ss_pred -----EEec------------cCCCeEEEEEeCC--EEEEEECCCcEEEEECCCCceeEEecCc----------------
Q 000744 1153 -----KHIN------------FNKHVKSLVMTGD--KLYCGCSGYSIQEVDLGNLTSTTFYAGT---------------- 1197 (1306)
Q Consensus 1153 -----~l~~------------~~~~V~sl~~s~d--~L~sgs~Dg~I~iwDl~~~~~~~~~~~~---------------- 1197 (1306)
..|+ ......++.|+++ .+.+-+.|..|++++.++|+.++.+...
T Consensus 179 fPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~ 258 (558)
T KOG0882|consen 179 FPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMH 258 (558)
T ss_pred CccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccce
Confidence 1121 2456789999976 5788889999999999999877655311
Q ss_pred ----------ccccCCc--cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEe
Q 000744 1198 ----------KKLLGKQ--TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFT 1243 (1306)
Q Consensus 1198 ----------~~l~gh~--~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~ 1243 (1306)
+.+..|. .-..+.|...+.|+.-++.=| |+|.++.++.+++.+.
T Consensus 259 VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g--ikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 259 VELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG--IKVINLDTNTVVRILG 314 (558)
T ss_pred eehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee--EEEEEeecCeEEEEec
Confidence 1122233 445677876666665555555 9999999998887764
No 333
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.91 E-value=0.003 Score=70.26 Aligned_cols=212 Identities=14% Similarity=0.098 Sum_probs=123.6
Q ss_pred CCcEEEEeCCCceEEcccC----CCCEEEEEE-eCCEEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCC
Q 000744 1017 VNATELWHCNEVTELDSST----NGEVLSLIH-LKGRVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGD 1091 (1306)
Q Consensus 1017 Dg~I~IWd~~~~~~i~~~H----~~~V~sl~f-spd~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~ 1091 (1306)
+|+|..||..+...+.... .+...+... ..+.+++++.++.+..||..+| +.+..+.. .+.+...- ..++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG--~~~W~~~~-~~~~~~~~-~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTG--KVLWRFDL-PGPISGAP-VVDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTS--EEEEEEEC-SSCGGSGE-EEETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCC--CEEEEeec-ccccccee-eeccc
Confidence 6889999987655443221 222332233 5678999999999999999999 66666653 22211111 12456
Q ss_pred EEEEEeCCCcEEEEEcCCCceeEE-Eeec--C-C-CCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEecc---C----C
Q 000744 1092 KLYSGSLDKTIRVWSIKPEEIHCL-QVHN--V-K-EAVHELTANAEIACFVSPATGVKVYNWSGAIKHINF---N----K 1159 (1306)
Q Consensus 1092 ~L~Sgs~DgtI~VWdi~~~~~~~i-~~~~--~-~-~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~---~----~ 1159 (1306)
.++.++.|+.+..+|..+++..-. .... . . .......+.+..+.+...+..+..++......+|.. . .
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~ 157 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSS 157 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS-
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCc
Confidence 777788889999999999873222 1111 0 0 112223333444444443444777776655555532 1 1
Q ss_pred -------CeEEEEEeCCEEEEEECCCcEEEEECCCCceeEEecCcccccCCccEEEEEEeCCcEEEEEEecCCCEEEEEE
Q 000744 1160 -------HVKSLVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLLFAGGSSVDGTAGKVFS 1232 (1306)
Q Consensus 1160 -------~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~s~Dg~~I~IWD 1232 (1306)
....+.+.++.++.++.++.+.-+|+.+++.+.... . . .+.......++.+++.. .++ .|..||
T Consensus 158 ~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~w~~~-~----~--~~~~~~~~~~~~l~~~~-~~~-~l~~~d 228 (238)
T PF13360_consen 158 PISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEKLWSKP-I----S--GIYSLPSVDGGTLYVTS-SDG-RLYALD 228 (238)
T ss_dssp -EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTEEEEEEC-S----S---ECECEECCCTEEEEEE-TTT-EEEEEE
T ss_pred ceeeecccccceEEECCEEEEEcCCCeEEEEECCCCCEEEEec-C----C--CccCCceeeCCEEEEEe-CCC-EEEEEE
Confidence 113444456688888888864444999998654221 0 0 23332233555555554 577 899999
Q ss_pred CCCCceEEE
Q 000744 1233 ISSKTAVGS 1241 (1306)
Q Consensus 1233 ~~t~~~l~~ 1241 (1306)
.++|+.+.+
T Consensus 229 ~~tG~~~W~ 237 (238)
T PF13360_consen 229 LKTGKVVWQ 237 (238)
T ss_dssp TTTTEEEEE
T ss_pred CCCCCEEeE
Confidence 999987654
No 334
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.89 E-value=0.00018 Score=80.42 Aligned_cols=187 Identities=16% Similarity=0.222 Sum_probs=137.2
Q ss_pred ccccccchHHHHHHHhcCCcHHHHHHHHHHHHHHhccCccccccccccCCchHHHHHHHhcCh----HHHHHHHhccCC-
Q 000744 529 YLLKPTIINGFAEILSASLSREVLRTSVYILSELMVADESVGDILTSVDSDFDCLAALLKNGL----GEAAVLIYQLRP- 603 (1306)
Q Consensus 529 ~i~~~~~I~~Lv~~L~~~~~~~~~e~Av~~L~~L~s~~~~~~~~I~~~~~~i~~Lv~lLk~g~----~~Aa~aL~~L~~- 603 (1306)
.+..++-++.|+.+|....++..++.|..+|.+. +....++..|.. .|+++.++.+|.++. ..|..+|.||+.
T Consensus 7 ~~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~-aaf~~nq~~Ir~-~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~ 84 (254)
T PF04826_consen 7 NILEAQELQKLLCLLESTEDPFIQEKALIALGNS-AAFPFNQDIIRD-LGGISLIGSLLNDPNPSVREKALNALNNLSVN 84 (254)
T ss_pred CCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhh-ccChhHHHHHHH-cCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC
Confidence 3467788999999999998999999999999998 556667777776 899999999999976 679999999988
Q ss_pred --CHHHHhhCCchHHHHHHhhcCCccccchhcccCchHHHHHHHHHHHccCCCCCchhhhhHhhcCCCHHHHHhhc--CC
Q 000744 604 --AFAQLSAHEFIPSLVQLVLNKTEEFDELQFVMEPKDAAIEMLEQILMGGDKKSRSITALSLISANGIPALIKCL--DR 679 (1306)
Q Consensus 604 --~~~~i~~~g~i~~Lv~ll~~g~~~~~~~~~~~~~k~aa~~lL~~l~~~~~~~~~~~n~~~i~~~g~i~~Lv~~l--~~ 679 (1306)
|..+|.. .|+.+++.+.++.-... . +-|+.-+|.+|... +.+...+ .+.|+.|+.+| |+
T Consensus 85 ~en~~~Ik~--~i~~Vc~~~~s~~lns~-~------Q~agLrlL~nLtv~------~~~~~~l--~~~i~~ll~LL~~G~ 147 (254)
T PF04826_consen 85 DENQEQIKM--YIPQVCEETVSSPLNSE-V------QLAGLRLLTNLTVT------NDYHHML--ANYIPDLLSLLSSGS 147 (254)
T ss_pred hhhHHHHHH--HHHHHHHHHhcCCCCCH-H------HHHHHHHHHccCCC------cchhhhH--HhhHHHHHHHHHcCC
Confidence 6666654 58888887766542121 1 23677777776322 3443444 34799999999 88
Q ss_pred hhHHHHHHHHHHhhhhccchhHHHHHHhcccchhhhhhhcCCchh-HhHHHHHHHHH
Q 000744 680 VEVRRSIVSILLCCMHADKSCKTLIAKRIELSHVLDLFHDGNDSV-RGICINFLSEL 735 (1306)
Q Consensus 680 ~~~~~~~~~~L~~~~~~~~~~r~~i~~~~~~~~l~~ll~~g~~~~-k~~a~~~L~~L 735 (1306)
..-|..++.+|++........|.++.. .+.+.|+.|+...+++. -..++.++-.+
T Consensus 148 ~~~k~~vLk~L~nLS~np~~~~~Ll~~-q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni 203 (254)
T PF04826_consen 148 EKTKVQVLKVLVNLSENPDMTRELLSA-QVLSSFLSLFNSSESKENLLRVLTFFENI 203 (254)
T ss_pred hHHHHHHHHHHHHhccCHHHHHHHHhc-cchhHHHHHHccCCccHHHHHHHHHHHHH
Confidence 889999999888664444444555554 57999999998775553 44455555333
No 335
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.88 E-value=0.0024 Score=77.48 Aligned_cols=198 Identities=10% Similarity=-0.036 Sum_probs=112.1
Q ss_pred CcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCE-EEEEeCC---CcEEEEEcCCCceeEEEeecCCCCeEEEEeCC
Q 000744 1056 GTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDK-LYSGSLD---KTIRVWSIKPEEIHCLQVHNVKEAVHELTANA 1131 (1306)
Q Consensus 1056 g~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~-L~Sgs~D---gtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~ 1131 (1306)
..|.+=|.+.. . .+.+.... .+..-.|+|||+. ++..+.+ ..|.++|+.+++.+.+... .+......
T Consensus 169 ~~l~~~d~dg~--~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~--~g~~~~~~--- 239 (419)
T PRK04043 169 SNIVLADYTLT--Y-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASS--QGMLVVSD--- 239 (419)
T ss_pred ceEEEECCCCC--c-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecC--CCcEEeeE---
Confidence 35555556544 2 23233333 7788999999984 6544443 4688889988765544432 23333333
Q ss_pred cEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCCEEEEEECCCcEEEEECCCCceeEEecCcccccCCccEEEEEE
Q 000744 1132 EIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHM 1211 (1306)
Q Consensus 1132 ~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~ 1211 (1306)
++|||+.+.+.. +...+..|.++|+.+++....... . + ......|
T Consensus 240 ----~SPDG~~la~~~-------------------------~~~g~~~Iy~~dl~~g~~~~LT~~-~---~--~d~~p~~ 284 (419)
T PRK04043 240 ----VSKDGSKLLLTM-------------------------APKGQPDIYLYDTNTKTLTQITNY-P---G--IDVNGNF 284 (419)
T ss_pred ----ECCCCCEEEEEE-------------------------ccCCCcEEEEEECCCCcEEEcccC-C---C--ccCccEE
Confidence 788887442211 112245788889888765442111 1 1 1233468
Q ss_pred eCCc-EEEEEEecCC-CEEEEEECCCCceEEEEecCCCEEEEEEcCc--EEEEEE-CC--------CcEEEEECCCCeEE
Q 000744 1212 HNGL-LFAGGSSVDG-TAGKVFSISSKTAVGSFTTGIDIQHLAVNSD--FIFTAT-KC--------GTIEVWLKERVTRV 1278 (1306)
Q Consensus 1212 s~~~-~llas~s~Dg-~~I~IWD~~t~~~l~~l~~~~~V~sla~spd--~Lasgs-~D--------g~I~IWd~~tg~~l 1278 (1306)
+|++ .++.++...+ ..|+++|+.+++.......... ...|+|| +|+..+ .+ ..|.+.|+.++..
T Consensus 285 SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~- 361 (419)
T PRK04043 285 VEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI- 361 (419)
T ss_pred CCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-
Confidence 8766 3444443222 2688889988776433322211 2489998 444433 32 3688889888764
Q ss_pred EEEecccCCCCCCCeEEEEEcCCCCccC
Q 000744 1279 ASVKANNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1279 ~~l~~~~~~~~~~~V~slafSpdg~~La 1306 (1306)
..+.. +. ......|+|||++|+
T Consensus 362 ~~LT~---~~---~~~~p~~SPDG~~I~ 383 (419)
T PRK04043 362 RRLTA---NG---VNQFPRFSSDGGSIM 383 (419)
T ss_pred EECCC---CC---CcCCeEECCCCCEEE
Confidence 44542 11 223578999999874
No 336
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.88 E-value=4.4e-05 Score=91.36 Aligned_cols=191 Identities=15% Similarity=0.159 Sum_probs=124.8
Q ss_pred ccccccccccccc------cEEEEEeCCCcEEEEeCCCceE---EcccCCCCEEEEEEeC-C-EEEEEECCCcEEEEeCC
Q 000744 996 KLKKYSAVVTDIQ------KALMNLSSVNATELWHCNEVTE---LDSSTNGEVLSLIHLK-G-RVLSSHSDGTIKMWDSG 1064 (1306)
Q Consensus 996 ~l~ghs~~V~~i~------~~Lasgs~Dg~I~IWd~~~~~~---i~~~H~~~V~sl~fsp-d-~LaSgs~Dg~I~vWd~~ 1064 (1306)
.+.||+..+.++. .++++++.|..+..||++.... ....-...-+.|.|+- + .+.+.+..+.|.+||..
T Consensus 109 ~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r 188 (1081)
T KOG0309|consen 109 VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLR 188 (1081)
T ss_pred EEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEecc
Confidence 4678888888876 7899999999999999986322 2222344456788873 2 45555666789999998
Q ss_pred CCccceEEEEcccCccEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEe----CCcEEEEEcC
Q 000744 1065 KRVLRLIQEVREHTRAVTCLYVPS-SGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTA----NAEIACFVSP 1139 (1306)
Q Consensus 1065 t~~~~~i~~l~~H~~~V~sl~fsp-dg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~----~~~~v~~s~d 1139 (1306)
.|. .++..+++|...|+.++|+. ....+.+.+.||+|+.||........-.......+|+--.+ .+..+.....
T Consensus 189 ~gs-~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G 267 (1081)
T KOG0309|consen 189 KGS-TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVG 267 (1081)
T ss_pred CCC-cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccC
Confidence 764 78899999999999999987 44578899999999999987653222222222244443332 2222223333
Q ss_pred CCeEEEEEecCC-------------EEEeccCCCeEEEEEe------CC------EEEEEECCCcEEEEECCC
Q 000744 1140 ATGVKVYNWSGA-------------IKHINFNKHVKSLVMT------GD------KLYCGCSGYSIQEVDLGN 1187 (1306)
Q Consensus 1140 g~~I~i~~~~~~-------------~~l~~~~~~V~sl~~s------~d------~L~sgs~Dg~I~iwDl~~ 1187 (1306)
|..+-+..-+.. ..+.+|.+.|....|- +| .|+|=+.|.++++|-+.+
T Consensus 268 ~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 268 GNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred CeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 333333332221 1223455555444442 11 499999999999998865
No 337
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.86 E-value=0.0011 Score=77.97 Aligned_cols=273 Identities=8% Similarity=0.072 Sum_probs=153.1
Q ss_pred cEEEEEeCCCcEEEEeCCCceEEc-ccCCCCEEEEEEeCC--EEEEEEC-----------CCcEEEEeCCCCccceEEEE
Q 000744 1009 KALMNLSSVNATELWHCNEVTELD-SSTNGEVLSLIHLKG--RVLSSHS-----------DGTIKMWDSGKRVLRLIQEV 1074 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~~~i~-~~H~~~V~sl~fspd--~LaSgs~-----------Dg~I~vWd~~t~~~~~i~~l 1074 (1306)
.||+|=..-| |.+|--.....+. +.|. .|.-+.|||+ +|+|-+. ...+.|||+.+| ...+.|
T Consensus 223 TYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG--~lkrsF 298 (698)
T KOG2314|consen 223 TYLVTFHKQG-IALWGGESFDRIQRFYHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG--LLKRSF 298 (698)
T ss_pred eEEEEEeccc-eeeecCccHHHHHhccCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEcccc--chhcce
Confidence 6777777744 7788766533333 3454 4888999995 8888754 257899999999 666666
Q ss_pred cc--cCccEE-EEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeec-CCCCeEEEEeCCcEEEEEcCCCeEEEEEecC
Q 000744 1075 RE--HTRAVT-CLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHN-VKEAVHELTANAEIACFVSPATGVKVYNWSG 1150 (1306)
Q Consensus 1075 ~~--H~~~V~-sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~-~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~ 1150 (1306)
.. ....++ -+.||.|+++++--.. .+|.||+...-. .+.... .-..|.... |+|.++.+..|.-..
T Consensus 299 ~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~--lld~Kslki~gIr~Fs-------wsP~~~llAYwtpe~ 368 (698)
T KOG2314|consen 299 PVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFM--LLDKKSLKISGIRDFS-------WSPTSNLLAYWTPET 368 (698)
T ss_pred eccCCCccccceEEeccCCceeEEecc-ceEEEEecCcee--eecccccCCccccCcc-------cCCCcceEEEEcccc
Confidence 54 233333 3589999999997776 468899876532 111111 124455655 566666565555431
Q ss_pred C-----EEEecc--C--------CCeEEEE--E--eCCEEEE----------EECCCcEEEEECCCCceeEEecCccccc
Q 000744 1151 A-----IKHINF--N--------KHVKSLV--M--TGDKLYC----------GCSGYSIQEVDLGNLTSTTFYAGTKKLL 1201 (1306)
Q Consensus 1151 ~-----~~l~~~--~--------~~V~sl~--~--s~d~L~s----------gs~Dg~I~iwDl~~~~~~~~~~~~~~l~ 1201 (1306)
+ ..+... . -.|..+. | ++++|.. ++.=..+.|+.++....... .+.
T Consensus 369 ~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve-----~ve 443 (698)
T KOG2314|consen 369 NNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVE-----VVE 443 (698)
T ss_pred cCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCce-----eee
Confidence 1 111110 0 0111111 1 1333322 11112345555554332110 011
Q ss_pred CCccEEEEEEeCCc-EEE-EEEecCCCEEEEEECCCC----ceEEEEecCCCEEEEEEcCc--EEEE---EECCCcEEEE
Q 000744 1202 GKQTIHSLHMHNGL-LFA-GGSSVDGTAGKVFSISSK----TAVGSFTTGIDIQHLAVNSD--FIFT---ATKCGTIEVW 1270 (1306)
Q Consensus 1202 gh~~I~sl~~s~~~-~ll-as~s~Dg~~I~IWD~~t~----~~l~~l~~~~~V~sla~spd--~Las---gs~Dg~I~IW 1270 (1306)
-...|...+|.|.+ .++ .+|.....++.+|.+++. .++..+.. ...+.+.|+|. +++. +|..|.+.++
T Consensus 444 lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk-~~~N~vfwsPkG~fvvva~l~s~~g~l~F~ 522 (698)
T KOG2314|consen 444 LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK-KFANTVFWSPKGRFVVVAALVSRRGDLEFY 522 (698)
T ss_pred cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc-cccceEEEcCCCcEEEEEEecccccceEEE
Confidence 11167777776433 333 333333347889988742 23344433 45788999998 4443 4567999999
Q ss_pred ECCCCeEEEEEecccCCCCCCCeEEEEEcCCCCccC
Q 000744 1271 LKERVTRVASVKANNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1271 d~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~~La 1306 (1306)
|..-..+..+-. ..|..-+.+.|+|.|+|++
T Consensus 523 D~~~a~~k~~~~-----~eh~~at~veWDPtGRYvv 553 (698)
T KOG2314|consen 523 DTDYADLKDTAS-----PEHFAATEVEWDPTGRYVV 553 (698)
T ss_pred ecchhhhhhccC-----ccccccccceECCCCCEEE
Confidence 987433322221 1335678899999999874
No 338
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.86 E-value=0.00021 Score=76.66 Aligned_cols=224 Identities=13% Similarity=0.136 Sum_probs=127.4
Q ss_pred EEEEEEeCC-EEEEEECCCcEEEEeCCCC----------ccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 000744 1039 VLSLIHLKG-RVLSSHSDGTIKMWDSGKR----------VLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSI 1107 (1306)
Q Consensus 1039 V~sl~fspd-~LaSgs~Dg~I~vWd~~t~----------~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi 1107 (1306)
|+.+.++.+ .|+++..++.+.......+ .....+.+..|+++-.+-+.+-.++.++++..||.+.+.+.
T Consensus 39 ~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~ 118 (319)
T KOG4714|consen 39 LSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFST 118 (319)
T ss_pred EEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEec
Confidence 666666654 7888877777766655433 11233344444443333333445678999999999999987
Q ss_pred CCCc--eeEEEee--c--CCCCeEEEEe--CCcEEEEEcCCCeEEEEEecCCEEEe---ccCCCeEEEEEeCC---EEEE
Q 000744 1108 KPEE--IHCLQVH--N--VKEAVHELTA--NAEIACFVSPATGVKVYNWSGAIKHI---NFNKHVKSLVMTGD---KLYC 1173 (1306)
Q Consensus 1108 ~~~~--~~~i~~~--~--~~~~V~sl~~--~~~~v~~s~dg~~I~i~~~~~~~~l~---~~~~~V~sl~~s~d---~L~s 1173 (1306)
+.-. ...+... . ....+....+ .+....+...+. .+.|+.+....+. .....|++++-+|. .+++
T Consensus 119 ~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~-~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~c 197 (319)
T KOG4714|consen 119 DKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDN-FYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCC 197 (319)
T ss_pred hHHHhhhhhcccccccccccceeecccEEecCCcceEeeccc-eeeecccccccccccccccccchhhhCCcccccEEEE
Confidence 7521 0001000 0 0000111111 222223333333 4445544322221 11234888888865 4889
Q ss_pred EECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEe---CCcEEEEEEecCCCEEEEEECCCCce-----------
Q 000744 1174 GCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMH---NGLLFAGGSSVDGTAGKVFSISSKTA----------- 1238 (1306)
Q Consensus 1174 gs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s---~~~~llas~s~Dg~~I~IWD~~t~~~----------- 1238 (1306)
|+.||.+.+||.++..... ..+..|. +|+-+.|+ |+.+|. ++.|| .+.-||..+.-+
T Consensus 198 gt~dg~~~l~d~rn~~~p~-----S~l~ahk~~i~eV~FHpk~p~~Lft--~sedG-slw~wdas~~~l~i~~~~s~~s~ 269 (319)
T KOG4714|consen 198 GTDDGIVGLWDARNVAMPV-----SLLKAHKAEIWEVHFHPKNPEHLFT--CSEDG-SLWHWDASTTFLSISNQASVISS 269 (319)
T ss_pred ecCCCeEEEEEcccccchH-----HHHHHhhhhhhheeccCCCchheeE--ecCCC-cEEEEcCCCceEEecCccccccc
Confidence 9999999999999874322 2355777 99999998 334443 34677 799999774211
Q ss_pred ------EEE-Ee-----c--CCCEEEEEEcCcEEEEEECCCcEEEEE
Q 000744 1239 ------VGS-FT-----T--GIDIQHLAVNSDFIFTATKCGTIEVWL 1271 (1306)
Q Consensus 1239 ------l~~-l~-----~--~~~V~sla~spd~Lasgs~Dg~I~IWd 1271 (1306)
++. +. . ...|+++.+..+.+++|++-+-|++++
T Consensus 270 WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 270 WLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred cccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence 111 00 0 112666666677899999888888865
No 339
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.82 E-value=0.0042 Score=72.68 Aligned_cols=244 Identities=12% Similarity=0.104 Sum_probs=138.3
Q ss_pred CCcEEEEeCCCceEEcc--cCCCC--EE-EEEEeCC--EEEEEECCCcEEEEeCCCCccc--eEEEEcccCccEEEEEEc
Q 000744 1017 VNATELWHCNEVTELDS--STNGE--VL-SLIHLKG--RVLSSHSDGTIKMWDSGKRVLR--LIQEVREHTRAVTCLYVP 1087 (1306)
Q Consensus 1017 Dg~I~IWd~~~~~~i~~--~H~~~--V~-sl~fspd--~LaSgs~Dg~I~vWd~~t~~~~--~i~~l~~H~~~V~sl~fs 1087 (1306)
++.+.+||+.+...+.. +...+ .+ -+.|+-+ +++=- ....++|+++ ++... +...++ ...|....|+
T Consensus 107 ~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr--~~gi~dFsis 182 (561)
T COG5354 107 KNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLR--PVGILDFSIS 182 (561)
T ss_pred cCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhcc--ccceeeEEec
Confidence 34799999987655432 22222 33 4566653 22222 3456999997 43211 122222 2468888999
Q ss_pred CCC--CEEE-----EEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEe--CCcEEEEEc------CC-----CeEEEEE
Q 000744 1088 SSG--DKLY-----SGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTA--NAEIACFVS------PA-----TGVKVYN 1147 (1306)
Q Consensus 1088 pdg--~~L~-----Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~--~~~~v~~s~------dg-----~~I~i~~ 1147 (1306)
|.| ..|+ .++.++++++|.+..+.....+.+-. -.=..+.| .+..+++-. +. +.+.+++
T Consensus 183 P~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk-~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~ 261 (561)
T COG5354 183 PEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFK-VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLR 261 (561)
T ss_pred CCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEe-ecccEEEEecCCceEEEEEEEeeecccceeccceEEEEe
Confidence 853 3344 34678889999988664222222210 11112232 112111110 00 1133333
Q ss_pred ecC-CEEEe-ccCCCeEEEEEeCC----EEEEEECCCcEEEEECCCCceeEEecCcccccCCccEEEEEEeCCcEEEEEE
Q 000744 1148 WSG-AIKHI-NFNKHVKSLVMTGD----KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLLFAGGS 1221 (1306)
Q Consensus 1148 ~~~-~~~l~-~~~~~V~sl~~s~d----~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~ 1221 (1306)
..+ .+++. +..++|...+|.|. .+++|-.+..+.++|++.. ....+... .=+.+.|+|.+.++...
T Consensus 262 ~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~-------~rNT~~fsp~~r~il~a 333 (561)
T COG5354 262 ITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQ-------KRNTIFFSPHERYILFA 333 (561)
T ss_pred ecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEecCCc-------ccccccccCcccEEEEe
Confidence 331 22222 56889999999865 2667778999999999877 43333211 33567889888777775
Q ss_pred ecCC--CEEEEEECCCCceEE-EEecCCCEEEEEEcCc--EEEEEE------CCCcEEEEECCC
Q 000744 1222 SVDG--TAGKVFSISSKTAVG-SFTTGIDIQHLAVNSD--FIFTAT------KCGTIEVWLKER 1274 (1306)
Q Consensus 1222 s~Dg--~~I~IWD~~t~~~l~-~l~~~~~V~sla~spd--~Lasgs------~Dg~I~IWd~~t 1274 (1306)
+.|+ +.|-+||....-.+. .+.+ ....-+.|+|| ++.+.. .|..|+|||+..
T Consensus 334 gF~nl~gni~i~~~~~rf~~~~~~~~-~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 334 GFDNLQGNIEIFDPAGRFKVAGAFNG-LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred cCCccccceEEeccCCceEEEEEeec-CCceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence 5553 369999987654443 5543 33455679998 444442 578899999864
No 340
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.82 E-value=0.029 Score=63.07 Aligned_cols=217 Identities=16% Similarity=0.114 Sum_probs=125.3
Q ss_pred EEEEeC--C-EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEc-CCCCEEEEEeCCCcEEEEEcCCCceeEEE
Q 000744 1041 SLIHLK--G-RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVP-SSGDKLYSGSLDKTIRVWSIKPEEIHCLQ 1116 (1306)
Q Consensus 1041 sl~fsp--d-~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fs-pdg~~L~Sgs~DgtI~VWdi~~~~~~~i~ 1116 (1306)
++.|.+ + ++++--..+.|..||..++ . ...+.... ...+.+. +++ .++.+..++ +.++|..+++...+.
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~--~-~~~~~~~~--~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTG--E-VEVIDLPG--PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTT--E-EEEEESSS--EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCC--e-EEEEecCC--CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEe
Confidence 567886 3 5555556899999999987 2 22232222 6677777 565 555555544 566699988655444
Q ss_pred eec----CCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCCEEEEEECCCcEEEEECCCCceeE
Q 000744 1117 VHN----VKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGDKLYCGCSGYSIQEVDLGNLTSTT 1192 (1306)
Q Consensus 1117 ~~~----~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~ 1192 (1306)
... .....+.++ +.++|+ +.+.+...... .....|.|..++.. ++...
T Consensus 77 ~~~~~~~~~~~~ND~~-------vd~~G~-ly~t~~~~~~~-------------------~~~~~g~v~~~~~~-~~~~~ 128 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVA-------VDPDGN-LYVTDSGGGGA-------------------SGIDPGSVYRIDPD-GKVTV 128 (246)
T ss_dssp EEETTCSCTEEEEEEE-------E-TTS--EEEEEECCBCT-------------------TCGGSEEEEEEETT-SEEEE
T ss_pred eccCCCcccCCCceEE-------EcCCCC-EEEEecCCCcc-------------------ccccccceEEECCC-CeEEE
Confidence 432 123344554 666666 22221110000 00000557777776 44433
Q ss_pred EecCcccccCCccEEEEEEeCCcE-EEEEEecCCCEEEEEECCCCc--e--EEEE---ecCC-CEEEEEEcCc--EEEEE
Q 000744 1193 FYAGTKKLLGKQTIHSLHMHNGLL-FAGGSSVDGTAGKVFSISSKT--A--VGSF---TTGI-DIQHLAVNSD--FIFTA 1261 (1306)
Q Consensus 1193 ~~~~~~~l~gh~~I~sl~~s~~~~-llas~s~Dg~~I~IWD~~t~~--~--l~~l---~~~~-~V~sla~spd--~Lasg 1261 (1306)
...+- ...+.++|++++. +.++-+..+ .|..|++.... . ...+ .... ..-.++++.+ +.++.
T Consensus 129 ~~~~~------~~pNGi~~s~dg~~lyv~ds~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~ 201 (246)
T PF08450_consen 129 VADGL------GFPNGIAFSPDGKTLYVADSFNG-RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVAD 201 (246)
T ss_dssp EEEEE------SSEEEEEEETTSSEEEEEETTTT-EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEE
T ss_pred EecCc------ccccceEECCcchheeecccccc-eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEE
Confidence 22211 1568999997764 444544444 79999885322 1 1222 2222 3788999887 55555
Q ss_pred ECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEc-CCCCcc
Q 000744 1262 TKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTG-VDGHPY 1305 (1306)
Q Consensus 1262 s~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafS-pdg~~L 1305 (1306)
...+.|.+++.+ |+.+..+.. + ...+++++|. +|.+.|
T Consensus 202 ~~~~~I~~~~p~-G~~~~~i~~---p--~~~~t~~~fgg~~~~~L 240 (246)
T PF08450_consen 202 WGGGRIVVFDPD-GKLLREIEL---P--VPRPTNCAFGGPDGKTL 240 (246)
T ss_dssp ETTTEEEEEETT-SCEEEEEE----S--SSSEEEEEEESTTSSEE
T ss_pred cCCCEEEEECCC-ccEEEEEcC---C--CCCEEEEEEECCCCCEE
Confidence 578999999988 999998885 2 2489999994 665543
No 341
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.82 E-value=0.013 Score=67.08 Aligned_cols=227 Identities=16% Similarity=0.198 Sum_probs=141.7
Q ss_pred eCCEEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEE---------
Q 000744 1045 LKGRVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCL--------- 1115 (1306)
Q Consensus 1045 spd~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i--------- 1115 (1306)
..+.|+.|..+| +.+++..... ...... +...|..+...++-+.+++-+ |+++.++++..-.....
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~-~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPS-KPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCc-cceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 356899999999 8999993221 233332 333499999999877777765 49999999876431110
Q ss_pred ----EeecCCCCeEEEE----eCCcEEEEEcCCCeEEEEEecCC---E----EEeccCCCeEEEEEeCCEEEEEECCCcE
Q 000744 1116 ----QVHNVKEAVHELT----ANAEIACFVSPATGVKVYNWSGA---I----KHINFNKHVKSLVMTGDKLYCGCSGYSI 1180 (1306)
Q Consensus 1116 ----~~~~~~~~V~sl~----~~~~~v~~s~dg~~I~i~~~~~~---~----~l~~~~~~V~sl~~s~d~L~sgs~Dg~I 1180 (1306)
........+...+ ..+....+....+.|.++.|... . +-......+.++.|.++.++.|..++ .
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~-f 159 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKG-F 159 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCCc-e
Confidence 0122223444444 12222333334446888888753 1 22345789999999999999988655 7
Q ss_pred EEEECCCCceeEEecCcccc------cCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEE--EEecCCCEEEE
Q 000744 1181 QEVDLGNLTSTTFYAGTKKL------LGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVG--SFTTGIDIQHL 1251 (1306)
Q Consensus 1181 ~iwDl~~~~~~~~~~~~~~l------~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~--~l~~~~~V~sl 1251 (1306)
.+.|+.++.....+.....- .... ++..+..+++ .++.+. |. .-.+.| ..|+..+ .+.-...+.++
T Consensus 160 ~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~Ll~~--~~-~g~fv~-~~G~~~r~~~i~W~~~p~~~ 234 (275)
T PF00780_consen 160 YLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDN-EFLLCY--DN-IGVFVN-KNGEPSRKSTIQWSSAPQSV 234 (275)
T ss_pred EEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCc-eEEEEe--cc-eEEEEc-CCCCcCcccEEEcCCchhEE
Confidence 88899987766554321110 0111 4555555555 444444 44 333344 4454443 44445567888
Q ss_pred EEcCcEEEEEECCCcEEEEECCCCeEEEEEec
Q 000744 1252 AVNSDFIFTATKCGTIEVWLKERVTRVASVKA 1283 (1306)
Q Consensus 1252 a~spd~Lasgs~Dg~I~IWd~~tg~~l~~l~~ 1283 (1306)
++...|++..+.+ .|.||++.+|+.++++..
T Consensus 235 ~~~~pyli~~~~~-~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 235 AYSSPYLIAFSSN-SIEVRSLETGELVQTIPL 265 (275)
T ss_pred EEECCEEEEECCC-EEEEEECcCCcEEEEEEC
Confidence 8887788777665 599999999999999984
No 342
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.81 E-value=0.00017 Score=70.84 Aligned_cols=116 Identities=20% Similarity=0.298 Sum_probs=97.1
Q ss_pred HHhhCCchHHHHHHhhcCCccccchhcccCchHHHHHHHHHHHccCCCCCchhhhhHhhcCCCHHHHHhhc--CChhHHH
Q 000744 607 QLSAHEFIPSLVQLVLNKTEEFDELQFVMEPKDAAIEMLEQILMGGDKKSRSITALSLISANGIPALIKCL--DRVEVRR 684 (1306)
Q Consensus 607 ~i~~~g~i~~Lv~ll~~g~~~~~~~~~~~~~k~aa~~lL~~l~~~~~~~~~~~n~~~i~~~g~i~~Lv~~l--~~~~~~~ 684 (1306)
++++.|.||.|+++|.+++... +..|+..|..+... ++++...+++.|+++.|+++| ++.+-+.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~---------~~~a~~~l~~l~~~-----~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~ 67 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENV---------QREAAWALSNLSAG-----NNDNIQAVVEAGGLPALVQLLKSEDEEVVK 67 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHH---------HHHHHHHHHHHhcC-----CHHHHHHHHHCCChHHHHHHHhCCCHHHHH
Confidence 5678999999999999886222 44677777777544 278889999999999999999 5677888
Q ss_pred HHHHHHHhhhhccchhHHHHHHhcccchhhhhhhcCCchhHhHHHHHHHHHH
Q 000744 685 SIVSILLCCMHADKSCKTLIAKRIELSHVLDLFHDGNDSVRGICINFLSELV 736 (1306)
Q Consensus 685 ~~~~~L~~~~~~~~~~r~~i~~~~~~~~l~~ll~~g~~~~k~~a~~~L~~L~ 736 (1306)
.++.+|.+........+..+.+.+.++.+++++..++.+.++.|..+|..|+
T Consensus 68 ~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 68 AALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 8888998887777677888888999999999999999999999999998875
No 343
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.79 E-value=0.0013 Score=79.78 Aligned_cols=233 Identities=10% Similarity=0.068 Sum_probs=151.6
Q ss_pred CCCEEEEEEeCCEEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCC------------CEEEEEeCCCcEE
Q 000744 1036 NGEVLSLIHLKGRVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSG------------DKLYSGSLDKTIR 1103 (1306)
Q Consensus 1036 ~~~V~sl~fspd~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg------------~~L~Sgs~DgtI~ 1103 (1306)
...-.++.|+|.-|+.-+....|.+-|..+- +.++++.-|...|+.+.|.|.. -.|+++...|.|.
T Consensus 15 ~sN~~A~Dw~~~GLiAygshslV~VVDs~s~--q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi 92 (1062)
T KOG1912|consen 15 RSNRNAADWSPSGLIAYGSHSLVSVVDSRSL--QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII 92 (1062)
T ss_pred cccccccccCccceEEEecCceEEEEehhhh--hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence 3346688999974444444567889999887 8899999999999999998731 2677888889999
Q ss_pred EEEcCCCceeEEEeecCCCCeEEEEe------CCcEEEEEcCCCeEEEEEecCCEEEeccC---CCeEEEEEeC---CEE
Q 000744 1104 VWSIKPEEIHCLQVHNVKEAVHELTA------NAEIACFVSPATGVKVYNWSGAIKHINFN---KHVKSLVMTG---DKL 1171 (1306)
Q Consensus 1104 VWdi~~~~~~~i~~~~~~~~V~sl~~------~~~~v~~s~dg~~I~i~~~~~~~~l~~~~---~~V~sl~~s~---d~L 1171 (1306)
+||+..+...+... .+.+++..+.| ...++......+++.+|+.+...++|.+. ....|+.+.| .++
T Consensus 93 l~d~~~~s~~~~l~-~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~ 171 (1062)
T KOG1912|consen 93 LVDFVLASVINWLS-HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHF 171 (1062)
T ss_pred EEEehhhhhhhhhc-CCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceE
Confidence 99999874322222 24578888888 22455555555669999999999999874 3345566653 355
Q ss_pred EEEECCCcEEEEECCC-------CceeEEecCccccc----------CCc--------cEEE--EEEeCC--cEEEEEEe
Q 000744 1172 YCGCSGYSIQEVDLGN-------LTSTTFYAGTKKLL----------GKQ--------TIHS--LHMHNG--LLFAGGSS 1222 (1306)
Q Consensus 1172 ~sgs~Dg~I~iwDl~~-------~~~~~~~~~~~~l~----------gh~--------~I~s--l~~s~~--~~llas~s 1222 (1306)
..-+..|.+.+-+.-. |+..++-..+..+. .++ ..++ .+|+|. +.++++.
T Consensus 172 ~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~- 250 (1062)
T KOG1912|consen 172 CVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITF- 250 (1062)
T ss_pred EEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEe-
Confidence 5555566665554321 33333333221100 000 1111 334543 3344443
Q ss_pred cCCCEEEEEECCCCceEEEEec-CCCEEEEEEcCc----EEEEEECCCcEEEEECCC
Q 000744 1223 VDGTAGKVFSISSKTAVGSFTT-GIDIQHLAVNSD----FIFTATKCGTIEVWLKER 1274 (1306)
Q Consensus 1223 ~Dg~~I~IWD~~t~~~l~~l~~-~~~V~sla~spd----~Lasgs~Dg~I~IWd~~t 1274 (1306)
.. .+.|+|++-..++....- .+.+.-+.+-|+ .++++-.||.+.||-.+.
T Consensus 251 -pr-ellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 251 -PR-ELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred -cc-ceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 44 699999998888888873 333444555554 999999999999997654
No 344
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=0.0025 Score=71.03 Aligned_cols=303 Identities=16% Similarity=0.176 Sum_probs=180.5
Q ss_pred hcCCCCHHHHHHHHHHHHHHhhhcCCCcccccccccccchHHHHHHHhcCCc-HHHHHHHHHHHHHHhccCccccccccc
Q 000744 497 LCTSENLQECETAVLAIARLWKESKGDPGVHAYLLKPTIINGFAEILSASLS-REVLRTSVYILSELMVADESVGDILTS 575 (1306)
Q Consensus 497 Ll~s~~~~~~e~Av~~i~~L~~~~~~~~~~~~~i~~~~~I~~Lv~~L~~~~~-~~~~e~Av~~L~~L~s~~~~~~~~I~~ 575 (1306)
|-.+++...+..++.+|-.+...-+ -+-.+.+..-+|.+|..+.+ .++--..+..+-.=+..+|-||+.+++
T Consensus 115 la~~~~~~~l~ksL~al~~lt~~qp-------dl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~ 187 (461)
T KOG4199|consen 115 LAESPNESVLKKSLEAINSLTHKQP-------DLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFME 187 (461)
T ss_pred HhhCCchhHHHHHHHHHHHhhcCCc-------chhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4567788888888888877776554 34456778888998887654 444444455554445567779999998
Q ss_pred cCCchHHHHHHH-hcCh----HHHHHHHhccCC-------------CHHHHhhCCchHHHHHHhhcCCccccchhcccCc
Q 000744 576 VDSDFDCLAALL-KNGL----GEAAVLIYQLRP-------------AFAQLSAHEFIPSLVQLVLNKTEEFDELQFVMEP 637 (1306)
Q Consensus 576 ~~~~i~~Lv~lL-k~g~----~~Aa~aL~~L~~-------------~~~~i~~~g~i~~Lv~ll~~g~~~~~~~~~~~~~ 637 (1306)
.+.++.+.+.| +.|. +++-.+|--|-. ....|+..|..-.|++.++-|-+..-
T Consensus 188 -~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~-------- 258 (461)
T KOG4199|consen 188 -LKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDS-------- 258 (461)
T ss_pred -hhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccH--------
Confidence 88888888666 4565 444444444411 44567778888999999998753221
Q ss_pred hHHHHHHHHHHHccCCCCCchhhhhHhhcCCCHHHHHhhc-C--ChhHHHHH--HHHHHhhhhccchhHHHHHHhcccch
Q 000744 638 KDAAIEMLEQILMGGDKKSRSITALSLISANGIPALIKCL-D--RVEVRRSI--VSILLCCMHADKSCKTLIAKRIELSH 712 (1306)
Q Consensus 638 k~aa~~lL~~l~~~~~~~~~~~n~~~i~~~g~i~~Lv~~l-~--~~~~~~~~--~~~L~~~~~~~~~~r~~i~~~~~~~~ 712 (1306)
|-+.+.+...++.++|-+..|++.||+..|++++ + ..+.|..+ ..-|++-+..+++.++.|.+.|+.+.
T Consensus 259 ------L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ 332 (461)
T KOG4199|consen 259 ------LVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDK 332 (461)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHH
Confidence 1112223345677899999999999999999999 3 23333222 22345567788999999999999999
Q ss_pred hhhhhhcC--CchhHhHHHHHHHHHHhcchhhhHHHHHHHhhhcCCcchHHHHHHHhhcCCCc-c-hhhHHHHHHhhhcc
Q 000744 713 VLDLFHDG--NDSVRGICINFLSELVLLNRRTFSNQILQVIRDEGSFSTMHTFLVYLQMAPME-Q-QPATASLLLQLDLL 788 (1306)
Q Consensus 713 l~~ll~~g--~~~~k~~a~~~L~~L~~~~~~~~~~~~l~~i~~~g~~~~m~~ll~~l~~~~~~-~-~~~~A~~l~~l~~l 788 (1306)
++.|+..- ++..-+.+...+.-||-..- .. ..+.|..+++.-..+.+-.+ |.. | |.-++.+.-++..=
T Consensus 333 ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~p-dh---sa~~ie~G~a~~avqAmkah----P~~a~vQrnac~~IRNiv~r 404 (461)
T KOG4199|consen 333 IITLALRHSDDPLVIQEVMAIISILCLRSP-DH---SAKAIEAGAADLAVQAMKAH----PVAAQVQRNACNMIRNIVVR 404 (461)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHhcCc-ch---HHHHHhcchHHHHHHHHHhC----cHHHHHHHHHHHHHHHHHHh
Confidence 99977644 44445556666655553322 11 12344444454443333322 211 1 11222222222211
Q ss_pred cCCccccccHHHHHHHHHHHHhcCCCchHHHHHHHHHHhccce
Q 000744 789 VEPRKMSMYREEAVEALIEALRRKDFPNSQMMALDALLSLTGR 831 (1306)
Q Consensus 789 ~~~~~~~~~reeai~~l~~~l~~~~~~~~q~~aa~~l~~l~g~ 831 (1306)
......+.-.-+||.|+.--+.. .+....-|..||.-||=+
T Consensus 405 -s~~~~~~~l~~GiE~Li~~A~~~-h~tce~~akaALRDLGc~ 445 (461)
T KOG4199|consen 405 -SAENRTILLANGIEKLIRTAKAN-HETCEAAAKAALRDLGCD 445 (461)
T ss_pred -hhhccchHHhccHHHHHHHHHhc-CccHHHHHHHHHHhcCcc
Confidence 11122233345566666543332 234444455667777543
No 345
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.78 E-value=0.0053 Score=81.12 Aligned_cols=249 Identities=11% Similarity=0.063 Sum_probs=145.2
Q ss_pred CCCCEEEEEEeCC--EEEEEECCCcEEEE----eCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 000744 1035 TNGEVLSLIHLKG--RVLSSHSDGTIKMW----DSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIK 1108 (1306)
Q Consensus 1035 H~~~V~sl~fspd--~LaSgs~Dg~I~vW----d~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~ 1108 (1306)
..+.|.++.|-++ .++.+..+|.|.+. |..+...+.+..+ ...|.+++||||+..|+..+.+|++.+.+-
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v---d~GI~a~~WSPD~Ella~vT~~~~l~~mt~- 149 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSV---DSGILAASWSPDEELLALVTGEGNLLLMTR- 149 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEE---cCcEEEEEECCCcCEEEEEeCCCEEEEEec-
Confidence 4567999999875 78899999999999 6666544444444 568999999999999999999999887642
Q ss_pred CCceeEEEeec------CCCCeEEEEeCCcEEEEE-cCCCeEEEEEecCC------EEEeccCCCeEEEEEeCC--EEEE
Q 000744 1109 PEEIHCLQVHN------VKEAVHELTANAEIACFV-SPATGVKVYNWSGA------IKHINFNKHVKSLVMTGD--KLYC 1173 (1306)
Q Consensus 1109 ~~~~~~i~~~~------~~~~V~sl~~~~~~v~~s-~dg~~I~i~~~~~~------~~l~~~~~~V~sl~~s~d--~L~s 1173 (1306)
+. ..+.... ....-.++-|+..---|. ..|+...---.+.+ ..+. ....-..|+|-+| ++++
T Consensus 150 ~f--d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAV 226 (928)
T PF04762_consen 150 DF--DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAV 226 (928)
T ss_pred cc--eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEE
Confidence 22 1221111 011222333211111111 11110000000000 0011 3334566777766 6666
Q ss_pred EEC---C---CcEEEEECCCCceeEEecCcccccCCccEEEEEEeCCcEEEEEEec--CCCEEEEEECCCCceEEEEe--
Q 000744 1174 GCS---G---YSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLLFAGGSSV--DGTAGKVFSISSKTAVGSFT-- 1243 (1306)
Q Consensus 1174 gs~---D---g~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~s~--Dg~~I~IWD~~t~~~l~~l~-- 1243 (1306)
.+. + ..|++|+-. |....+-.. ..| --.+++|.|.|.++++... +...|.+|. ++|-.-..|.
T Consensus 227 ss~~~~~~~~R~iRVy~Re-G~L~stSE~---v~g--Le~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~ 299 (928)
T PF04762_consen 227 SSVEPETGSRRVIRVYSRE-GELQSTSEP---VDG--LEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLR 299 (928)
T ss_pred EEEEcCCCceeEEEEECCC-ceEEecccc---CCC--ccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecC
Confidence 654 3 468999865 554443221 111 1246789999988888754 222567776 4555444444
Q ss_pred ---cCCCEEEEEEcCc--EEEEEECCCcEEEEECCCCeEE--EEEecccCCCCCCCeEEEEEcCCC
Q 000744 1244 ---TGIDIQHLAVNSD--FIFTATKCGTIEVWLKERVTRV--ASVKANNSGGGHAKITCLGTGVDG 1302 (1306)
Q Consensus 1244 ---~~~~V~sla~spd--~Lasgs~Dg~I~IWd~~tg~~l--~~l~~~~~~~~~~~V~slafSpdg 1302 (1306)
....|..+.|++| .|+..-.|. |++|...+.+.. +.+.. .....+..+.|+|..
T Consensus 300 ~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~----~~~~~~~~~~Wdpe~ 360 (928)
T PF04762_consen 300 FDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRF----SSSESVNFVKWDPEK 360 (928)
T ss_pred CCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEc----cCCCCCCceEECCCC
Confidence 2345999999998 777766554 999999887643 23331 122345558888853
No 346
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.78 E-value=0.00029 Score=78.86 Aligned_cols=178 Identities=13% Similarity=0.143 Sum_probs=130.5
Q ss_pred hhhHHHhhcCCCCHHHHHHHHHHHHHHhhhcCCCcccccccccccchHHHHHHHhcCCcHHHHHHHHHHHHHHhccCccc
Q 000744 490 LKPYVTCLCTSENLQECETAVLAIARLWKESKGDPGVHAYLLKPTIINGFAEILSASLSREVLRTSVYILSELMVADESV 569 (1306)
Q Consensus 490 ~~~~l~~Ll~s~~~~~~e~Av~~i~~L~~~~~~~~~~~~~i~~~~~I~~Lv~~L~~~~~~~~~e~Av~~L~~L~s~~~~~ 569 (1306)
+..++.-|-.+.++..++.|..++.+.+-... ++..|.+.|+|+.+..+|.+. ++++++.|+.+|.|| +.+.+|
T Consensus 14 l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~----nq~~Ir~~Ggi~lI~~lL~~p-~~~vr~~AL~aL~Nl-s~~~en 87 (254)
T PF04826_consen 14 LQKLLCLLESTEDPFIQEKALIALGNSAAFPF----NQDIIRDLGGISLIGSLLNDP-NPSVREKALNALNNL-SVNDEN 87 (254)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhccChh----HHHHHHHcCCHHHHHHHcCCC-ChHHHHHHHHHHHhc-CCChhh
Confidence 33444444457799999999999999877653 446889999999999999998 999999999999999 666668
Q ss_pred cccccccCCchHHHHHHHhcCh------HHHHHHHhccCC--CHHHHhhCCchHHHHHHhhcCCccccchhcccCchHHH
Q 000744 570 GDILTSVDSDFDCLAALLKNGL------GEAAVLIYQLRP--AFAQLSAHEFIPSLVQLVLNKTEEFDELQFVMEPKDAA 641 (1306)
Q Consensus 570 ~~~I~~~~~~i~~Lv~lLk~g~------~~Aa~aL~~L~~--~~~~i~~~g~i~~Lv~ll~~g~~~~~~~~~~~~~k~aa 641 (1306)
...|.. .|+.+.+...++. ..+..+|.+|+. ....+. .+.||.|++||..|+... |.=+
T Consensus 88 ~~~Ik~---~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l-~~~i~~ll~LL~~G~~~~---------k~~v 154 (254)
T PF04826_consen 88 QEQIKM---YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHML-ANYIPDLLSLLSSGSEKT---------KVQV 154 (254)
T ss_pred HHHHHH---HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhH-HhhHHHHHHHHHcCChHH---------HHHH
Confidence 877753 5777777666542 467789999987 233333 347999999999998433 2233
Q ss_pred HHHHHHHHccCCCCCchhhhhHhhcCCCHHHHHhhcC---ChhHHHHHHHHHHh
Q 000744 642 IEMLEQILMGGDKKSRSITALSLISANGIPALIKCLD---RVEVRRSIVSILLC 692 (1306)
Q Consensus 642 ~~lL~~l~~~~~~~~~~~n~~~i~~~g~i~~Lv~~l~---~~~~~~~~~~~L~~ 692 (1306)
.-+|-+ ++.|+.+...++++++++.++.++. ..+--..++.+..+
T Consensus 155 Lk~L~n------LS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~n 202 (254)
T PF04826_consen 155 LKVLVN------LSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFEN 202 (254)
T ss_pred HHHHHH------hccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHH
Confidence 444444 4678899999999999999999992 22333444444443
No 347
>PRK09687 putative lyase; Provisional
Probab=97.77 E-value=0.0015 Score=74.72 Aligned_cols=253 Identities=15% Similarity=0.048 Sum_probs=156.6
Q ss_pred HHHhChhhHHHhhcCCCCHHHHHHHHHHHHHHhhhcCCCcccccccccccchHHHHHHHhcCCcHHHHHHHHHHHHHHhc
Q 000744 485 TIINGLKPYVTCLCTSENLQECETAVLAIARLWKESKGDPGVHAYLLKPTIINGFAEILSASLSREVLRTSVYILSELMV 564 (1306)
Q Consensus 485 ~~~~~~~~~l~~Ll~s~~~~~~e~Av~~i~~L~~~~~~~~~~~~~i~~~~~I~~Lv~~L~~~~~~~~~e~Av~~L~~L~s 564 (1306)
.+..--...|..++..++...+..|+.+|..+- .+.+++.+..++.+. ++.+|..|+.+|..|..
T Consensus 19 ~~~~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~--------------~~~~~~~l~~ll~~~-d~~vR~~A~~aLg~lg~ 83 (280)
T PRK09687 19 QCKKLNDDELFRLLDDHNSLKRISSIRVLQLRG--------------GQDVFRLAIELCSSK-NPIERDIGADILSQLGM 83 (280)
T ss_pred HHhhccHHHHHHHHhCCCHHHHHHHHHHHHhcC--------------cchHHHHHHHHHhCC-CHHHHHHHHHHHHhcCC
Confidence 344444556667788889999999998875443 345678888877777 99999999999998721
Q ss_pred cCccccccccccCCchHHHHHHHh-cCh----HHHHHHHhccCCCHHHHhhCCchHHHHHHhhcCCccccchhcccCchH
Q 000744 565 ADESVGDILTSVDSDFDCLAALLK-NGL----GEAAVLIYQLRPAFAQLSAHEFIPSLVQLVLNKTEEFDELQFVMEPKD 639 (1306)
Q Consensus 565 ~~~~~~~~I~~~~~~i~~Lv~lLk-~g~----~~Aa~aL~~L~~~~~~i~~~g~i~~Lv~ll~~g~~~~~~~~~~~~~k~ 639 (1306)
-+. . ...+++.|..++. ... ..|+.+|-.++.... .-...+++.|...+.+.+...+ -
T Consensus 84 ~~~-----~--~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~-~~~~~a~~~l~~~~~D~~~~VR---------~ 146 (280)
T PRK09687 84 AKR-----C--QDNVFNILNNLALEDKSACVRASAINATGHRCKKNP-LYSPKIVEQSQITAFDKSTNVR---------F 146 (280)
T ss_pred Ccc-----c--hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccc-ccchHHHHHHHHHhhCCCHHHH---------H
Confidence 110 0 1347788887744 432 588889988754110 0012245556666666542222 2
Q ss_pred HHHHHHHHHHccCCCCCchhhhhHhhcCCCHHHHHhhc--CChhHHHHHHHHHHhhhhccchhHHHHHHhcccchhhhhh
Q 000744 640 AAIEMLEQILMGGDKKSRSITALSLISANGIPALIKCL--DRVEVRRSIVSILLCCMHADKSCKTLIAKRIELSHVLDLF 717 (1306)
Q Consensus 640 aa~~lL~~l~~~~~~~~~~~n~~~i~~~g~i~~Lv~~l--~~~~~~~~~~~~L~~~~~~~~~~r~~i~~~~~~~~l~~ll 717 (1306)
+|+..|.. +-...+|+.|+.+| .+.+-+..|+..|-..-. .....+++|+.+|
T Consensus 147 ~a~~aLg~----------------~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~---------~~~~~~~~L~~~L 201 (280)
T PRK09687 147 AVAFALSV----------------INDEAAIPLLINLLKDPNGDVRNWAAFALNSNKY---------DNPDIREAFVAML 201 (280)
T ss_pred HHHHHHhc----------------cCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCC---------CCHHHHHHHHHHh
Confidence 33333322 23345789999999 456677777777654310 0123567788899
Q ss_pred hcCCchhHhHHHHHHHHHHhcchhhhHHHHHHHhhhcCCcchHHHHHHHhhcCCCcchhhHHHHHHhhhcccCCcccccc
Q 000744 718 HDGNDSVRGICINFLSELVLLNRRTFSNQILQVIRDEGSFSTMHTFLVYLQMAPMEQQPATASLLLQLDLLVEPRKMSMY 797 (1306)
Q Consensus 718 ~~g~~~~k~~a~~~L~~L~~~~~~~~~~~~l~~i~~~g~~~~m~~ll~~l~~~~~~~~~~~A~~l~~l~~l~~~~~~~~~ 797 (1306)
.......|..|+..|-.+ +.... +..|+.+|+.... ...++..|+.+.
T Consensus 202 ~D~~~~VR~~A~~aLg~~---~~~~a----------------v~~Li~~L~~~~~--~~~a~~ALg~ig----------- 249 (280)
T PRK09687 202 QDKNEEIRIEAIIGLALR---KDKRV----------------LSVLIKELKKGTV--GDLIIEAAGELG----------- 249 (280)
T ss_pred cCCChHHHHHHHHHHHcc---CChhH----------------HHHHHHHHcCCch--HHHHHHHHHhcC-----------
Confidence 888888898888888443 22222 2336666655432 234455554433
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 000744 798 REEAVEALIEALRRKDFPNSQMMALDALL 826 (1306)
Q Consensus 798 reeai~~l~~~l~~~~~~~~q~~aa~~l~ 826 (1306)
-++|++.|...+.......++..|-.+|-
T Consensus 250 ~~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 250 DKTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred CHhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 25799999998886655677777766653
No 348
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.76 E-value=0.00048 Score=84.27 Aligned_cols=170 Identities=13% Similarity=0.109 Sum_probs=121.9
Q ss_pred cEEEEEeCCCcEEEEeCCCceEEcccCCCCEEEEEEeCCEEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcC
Q 000744 1009 KALMNLSSVNATELWHCNEVTELDSSTNGEVLSLIHLKGRVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPS 1088 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~~~i~~~H~~~V~sl~fspd~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fsp 1088 (1306)
++|+-|+-+|.|++.+..........|... .-...+++|||.||+|.|-.+.+. +..+++. -..++.+|+++|
T Consensus 50 ~~~~~GtH~g~v~~~~~~~~~~~~~~~s~~----~~~Gey~asCS~DGkv~I~sl~~~--~~~~~~d-f~rpiksial~P 122 (846)
T KOG2066|consen 50 KFFALGTHRGAVYLTTCQGNPKTNFDHSSS----ILEGEYVASCSDDGKVVIGSLFTD--DEITQYD-FKRPIKSIALHP 122 (846)
T ss_pred ceeeeccccceEEEEecCCccccccccccc----ccCCceEEEecCCCcEEEeeccCC--ccceeEe-cCCcceeEEecc
Confidence 789999999999999987654555556444 222349999999999999999887 4444442 356899999999
Q ss_pred C-----CCEEEEEeCCCcEEEEEcCC-CceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEec------
Q 000744 1089 S-----GDKLYSGSLDKTIRVWSIKP-EEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHIN------ 1156 (1306)
Q Consensus 1089 d-----g~~L~Sgs~DgtI~VWdi~~-~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~------ 1156 (1306)
+ .+.+++||.-| +.++.-+= +....+......++|.++.|.++++.|..|-. +++++......+..
T Consensus 123 d~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~ 200 (846)
T KOG2066|consen 123 DFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQ 200 (846)
T ss_pred chhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCcEEEEecCCC-cEEEeccccceeeccCCCCC
Confidence 8 56899999988 66654321 11233445556799999999999998888776 89999886555433
Q ss_pred ---cCCCeEEEEEeCCEEEEEECCCcEEEEECCC
Q 000744 1157 ---FNKHVKSLVMTGDKLYCGCSGYSIQEVDLGN 1187 (1306)
Q Consensus 1157 ---~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~ 1187 (1306)
.......+.|.++.-++-|...+|++..++.
T Consensus 201 ~~R~e~fpphl~W~~~~~LVIGW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 201 SVRPELFPPHLHWQDEDRLVIGWGDSVKICSIKK 234 (846)
T ss_pred CCCcccCCCceEecCCCeEEEecCCeEEEEEEec
Confidence 1233456778766444444566788888873
No 349
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=1.5e-05 Score=93.16 Aligned_cols=52 Identities=27% Similarity=0.519 Sum_probs=46.3
Q ss_pred CcccCcccccccCCcEEcCCCCcccHHHHHHHHHc----CCCCCCCCCCccCCCCC
Q 000744 342 KDFVCPITGQIFNDPVTLETGQTYERKAIQEWLKR----GNTTCPITRQPLCSNSL 393 (1306)
Q Consensus 342 ~~~~CpIc~~l~~dPv~~~cGhtfc~~cI~~~~~~----~~~~CP~c~~~l~~~~l 393 (1306)
.+..||||++-..=|+.+.|||-||-.||-++|.. +...||+|+..+..+++
T Consensus 185 t~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl 240 (513)
T KOG2164|consen 185 TDMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDL 240 (513)
T ss_pred cCCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccce
Confidence 38899999999999999999999999999999985 35679999999887665
No 350
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.76 E-value=1.2e-05 Score=89.09 Aligned_cols=68 Identities=16% Similarity=0.344 Sum_probs=55.0
Q ss_pred CCCCcccCcccccccCCcEEc-CCCCcccHHHHHHHHHcCCCCCCCCCCccCCCCC---CCccHHHHHHHHHH
Q 000744 339 RPPKDFVCPITGQIFNDPVTL-ETGQTYERKAIQEWLKRGNTTCPITRQPLCSNSL---PKTNYVLKRLITSW 407 (1306)
Q Consensus 339 ~~~~~~~CpIc~~l~~dPv~~-~cGhtfc~~cI~~~~~~~~~~CP~c~~~l~~~~l---~~~N~~L~~li~~~ 407 (1306)
++-....|++|..+|.||-|+ .|-||||+.||-+++.. ..+||+|+-.+..... +.++..|+.++.++
T Consensus 11 ~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL 82 (331)
T KOG2660|consen 11 ELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL 82 (331)
T ss_pred hcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHHH
Confidence 455778999999999999966 79999999999999998 7789999988765542 23666777776554
No 351
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.76 E-value=9.2e-05 Score=72.71 Aligned_cols=113 Identities=18% Similarity=0.202 Sum_probs=93.2
Q ss_pred HHHhChhhHHHhhcCCCCHHHHHHHHHHHHHHhhhcCCCcccccccccccchHHHHHHHhcCCcHHHHHHHHHHHHHHhc
Q 000744 485 TIINGLKPYVTCLCTSENLQECETAVLAIARLWKESKGDPGVHAYLLKPTIINGFAEILSASLSREVLRTSVYILSELMV 564 (1306)
Q Consensus 485 ~~~~~~~~~l~~Ll~s~~~~~~e~Av~~i~~L~~~~~~~~~~~~~i~~~~~I~~Lv~~L~~~~~~~~~e~Av~~L~~L~s 564 (1306)
....++++.+..++..++...++.|+..|.+++...+ .....+.+.++++.|+++|.++ +.++++.|+.+|.+|+.
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~---~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~ 78 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNN---DNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAA 78 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCH---HHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHcc
Confidence 3456788888888988899999999999999998754 3345777889999999999997 99999999999999977
Q ss_pred cCccccccccccCCchHHHHHHHhcCh----HHHHHHHhccC
Q 000744 565 ADESVGDILTSVDSDFDCLAALLKNGL----GEAAVLIYQLR 602 (1306)
Q Consensus 565 ~~~~~~~~I~~~~~~i~~Lv~lLk~g~----~~Aa~aL~~L~ 602 (1306)
..+..+..+.+ .|.++.|+++|..+. +.|..+|.+|+
T Consensus 79 ~~~~~~~~~~~-~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 79 GPEDNKLIVLE-AGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred CcHHHHHHHHH-CCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 66666666665 889999999999864 66777776664
No 352
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=2.3e-05 Score=83.33 Aligned_cols=78 Identities=29% Similarity=0.432 Sum_probs=72.0
Q ss_pred CCCCCCCcccCcccccccCCcEEcCCCCcccHHHHHHHHHcCCCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHCCCC
Q 000744 336 SRSRPPKDFVCPITGQIFNDPVTLETGQTYERKAIQEWLKRGNTTCPITRQPLCSNSLPKTNYVLKRLITSWKEQYPDL 414 (1306)
Q Consensus 336 ~~~~~~~~~~CpIc~~l~~dPv~~~cGhtfc~~cI~~~~~~~~~~CP~c~~~l~~~~l~~~N~~L~~li~~~~~~~~~~ 414 (1306)
.+.++|+.++|.|..++|++||+++.|-||.|.-|.+++..-.+.-|++|.++...+++ ||+.|+..|..+.+.+.+.
T Consensus 204 k~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~i-pN~alkevIa~fl~~n~w~ 281 (284)
T KOG4642|consen 204 KKREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLI-PNLALKEVIAAFLKENEWA 281 (284)
T ss_pred ccccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhc-cchHHHHHHHHHHHhcccc
Confidence 46789999999999999999999999999999999999997556699999999999997 9999999999999988763
No 353
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=1.5e-05 Score=85.82 Aligned_cols=52 Identities=17% Similarity=0.356 Sum_probs=44.8
Q ss_pred CCcccCcccccccCCcEEcCCCCcccHHHHHH-HHHcCCCCCCCCCCccCCCC
Q 000744 341 PKDFVCPITGQIFNDPVTLETGQTYERKAIQE-WLKRGNTTCPITRQPLCSNS 392 (1306)
Q Consensus 341 ~~~~~CpIc~~l~~dPv~~~cGhtfc~~cI~~-~~~~~~~~CP~c~~~l~~~~ 392 (1306)
..++.|+||.+.+.+|.-++|||-||-.||-. |-......||.||+......
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 47899999999999999999999999999999 66665667999998765443
No 354
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.72 E-value=0.0064 Score=67.07 Aligned_cols=218 Identities=15% Similarity=0.162 Sum_probs=118.0
Q ss_pred EEEEEECCCcEEEEeCCCCccceEEEEcccC---ccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEe-----ec
Q 000744 1048 RVLSSHSDGTIKMWDSGKRVLRLIQEVREHT---RAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQV-----HN 1119 (1306)
Q Consensus 1048 ~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~---~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~-----~~ 1119 (1306)
.++..-.|..|.|=..++.-..++...+-++ ..=.-++||||+..|+.+...|+|+++|+.......+.. .+
T Consensus 10 k~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d 89 (282)
T PF15492_consen 10 KLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGD 89 (282)
T ss_pred cEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCc
Confidence 4555555666666655443212333333222 234678999999999999999999999998754332221 11
Q ss_pred CCCCeEEEEe---------CCcEEEEEcCCCeEEEEEec-----CCEEEe------ccCCCeEEEEEeCCE--EEEE-EC
Q 000744 1120 VKEAVHELTA---------NAEIACFVSPATGVKVYNWS-----GAIKHI------NFNKHVKSLVMTGDK--LYCG-CS 1176 (1306)
Q Consensus 1120 ~~~~V~sl~~---------~~~~v~~s~dg~~I~i~~~~-----~~~~l~------~~~~~V~sl~~s~d~--L~sg-s~ 1176 (1306)
....|.++.| ...+++....|. ++.+-.. +-...+ .+...|+++.|+|++ |++| +.
T Consensus 90 ~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~-L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~ 168 (282)
T PF15492_consen 90 LSDAIAGLIFLEYKKSAQWSYELLVINYRGQ-LRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCE 168 (282)
T ss_pred cccceeeeEeeccccccccceeEEEEeccce-eeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccC
Confidence 2355666666 124455555554 3333322 111111 136789999999873 4444 43
Q ss_pred CCcEEEEECCCCceeEEecCcccccCCccEEEEEE---eCCcEEEEEEecCC-----CEEEEEECCCCceEEEEe-cCCC
Q 000744 1177 GYSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHM---HNGLLFAGGSSVDG-----TAGKVFSISSKTAVGSFT-TGID 1247 (1306)
Q Consensus 1177 Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~---s~~~~llas~s~Dg-----~~I~IWD~~t~~~l~~l~-~~~~ 1247 (1306)
...-..+.... . .+++-.+ .|....+.+. .|+ .+-.+|.+-+........ ....
T Consensus 169 ~~~~~~s~a~~-~---------------GLtaWRiL~~~Pyyk~v~~~-~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~ 231 (282)
T PF15492_consen 169 QNQDGMSKASS-C---------------GLTAWRILSDSPYYKQVTSS-EDDITASSKRRGLLRIPSFKFFSRQGQEQDG 231 (282)
T ss_pred CCCCccccccc-c---------------CceEEEEcCCCCcEEEcccc-CccccccccccceeeccceeeeeccccCCCc
Confidence 33100000000 0 1111111 1222222111 111 012344433322221111 2456
Q ss_pred EEEEEEcCc--EEEEEECCCcEEEEECCCCeEEEEEec
Q 000744 1248 IQHLAVNSD--FIFTATKCGTIEVWLKERVTRVASVKA 1283 (1306)
Q Consensus 1248 V~sla~spd--~Lasgs~Dg~I~IWd~~tg~~l~~l~~ 1283 (1306)
|..|..+|| .|++...+|.|.+|++.+-...+.+..
T Consensus 232 i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 232 IFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred eEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 999999999 999999999999999999887777763
No 355
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.69 E-value=0.052 Score=61.01 Aligned_cols=201 Identities=10% Similarity=-0.003 Sum_probs=118.4
Q ss_pred cEEEEEeCCCcEEEEeCCCceEEcccCCCCEEEEEEe-CC-EEEEEECCCcEEEEeCCCCccceEEEEc--c-cCccEEE
Q 000744 1009 KALMNLSSVNATELWHCNEVTELDSSTNGEVLSLIHL-KG-RVLSSHSDGTIKMWDSGKRVLRLIQEVR--E-HTRAVTC 1083 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~~~i~~~H~~~V~sl~fs-pd-~LaSgs~Dg~I~vWd~~t~~~~~i~~l~--~-H~~~V~s 1083 (1306)
.++.+.-..+.|..|+..+.......... ...+.+. ++ .++.+..++ +.++|..++..+.+.... . .....+.
T Consensus 13 ~l~~~D~~~~~i~~~~~~~~~~~~~~~~~-~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND 90 (246)
T PF08450_consen 13 RLYWVDIPGGRIYRVDPDTGEVEVIDLPG-PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPND 90 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEESSS-EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEE
T ss_pred EEEEEEcCCCEEEEEECCCCeEEEEecCC-CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCce
Confidence 45666667889999998875444322233 6677777 54 777777755 455599988555555542 1 3456889
Q ss_pred EEEcCCCCEEEEEeCC--------CcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEe
Q 000744 1084 LYVPSSGDKLYSGSLD--------KTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHI 1155 (1306)
Q Consensus 1084 l~fspdg~~L~Sgs~D--------gtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~ 1155 (1306)
+++.++|++.++.... |.|..++.. ++...+ ...-.....|+ ++++|+
T Consensus 91 ~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~--~~~~~~pNGi~-------~s~dg~-------------- 146 (246)
T PF08450_consen 91 VAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV--ADGLGFPNGIA-------FSPDGK-------------- 146 (246)
T ss_dssp EEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE--EEEESSEEEEE-------EETTSS--------------
T ss_pred EEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE--ecCcccccceE-------ECCcch--------------
Confidence 9999999977766544 345555555 321111 11112333444 666665
Q ss_pred ccCCCeEEEEEeCCEE-EEEECCCcEEEEECCCCce-e---EEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEE
Q 000744 1156 NFNKHVKSLVMTGDKL-YCGCSGYSIQEVDLGNLTS-T---TFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGK 1229 (1306)
Q Consensus 1156 ~~~~~V~sl~~s~d~L-~sgs~Dg~I~iwDl~~~~~-~---~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~ 1229 (1306)
.| ++-+..+.|..|++..... + ..+. .+.... ..-.+++..++.+.++....+ .|.
T Consensus 147 --------------~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~g~pDG~~vD~~G~l~va~~~~~-~I~ 208 (246)
T PF08450_consen 147 --------------TLYVADSFNGRIWRFDLDADGGELSNRRVFI---DFPGGPGYPDGLAVDSDGNLWVADWGGG-RIV 208 (246)
T ss_dssp --------------EEEEEETTTTEEEEEEEETTTCCEEEEEEEE---E-SSSSCEEEEEEEBTTS-EEEEEETTT-EEE
T ss_pred --------------heeecccccceeEEEeccccccceeeeeeEE---EcCCCCcCCCcceEcCCCCEEEEEcCCC-EEE
Confidence 34 3555677788888763221 1 1111 111211 367889985555554443344 799
Q ss_pred EEECCCCceEEEEecC-CCEEEEEEc
Q 000744 1230 VFSISSKTAVGSFTTG-IDIQHLAVN 1254 (1306)
Q Consensus 1230 IWD~~t~~~l~~l~~~-~~V~sla~s 1254 (1306)
++|.. |+.+..+.-. ..+++++|.
T Consensus 209 ~~~p~-G~~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 209 VFDPD-GKLLREIELPVPRPTNCAFG 233 (246)
T ss_dssp EEETT-SCEEEEEE-SSSSEEEEEEE
T ss_pred EECCC-ccEEEEEcCCCCCEEEEEEE
Confidence 99987 8888888743 579999994
No 356
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.68 E-value=0.019 Score=71.33 Aligned_cols=264 Identities=9% Similarity=0.060 Sum_probs=152.0
Q ss_pred cEEEEEeCCCcEEEEeCCCceEEcccC---C-----CCE--EEEEEeC-CEEEEEECCCcEEEEeCCCCccceEEEEccc
Q 000744 1009 KALMNLSSVNATELWHCNEVTELDSST---N-----GEV--LSLIHLK-GRVLSSHSDGTIKMWDSGKRVLRLIQEVREH 1077 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~~~i~~~H---~-----~~V--~sl~fsp-d~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H 1077 (1306)
..+..++.|+.+.-.|..+........ . ..+ ..+.... +.++.++.||.|..+|.++| +.+..+...
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG--~~~W~~~~~ 139 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETG--KQVWKFGNN 139 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCC--CEeeeecCC
Confidence 667778888999999987644332211 0 011 1123444 78999999999999999999 666666433
Q ss_pred Ccc--EEEEEEcC--CCCEEEEEe---------CCCcEEEEEcCCCceeEEEeecCC-------------------CCeE
Q 000744 1078 TRA--VTCLYVPS--SGDKLYSGS---------LDKTIRVWSIKPEEIHCLQVHNVK-------------------EAVH 1125 (1306)
Q Consensus 1078 ~~~--V~sl~fsp--dg~~L~Sgs---------~DgtI~VWdi~~~~~~~i~~~~~~-------------------~~V~ 1125 (1306)
... -..+.-+| .+..++.++ .+|.+...|..+++..-....... ..+.
T Consensus 140 ~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw 219 (488)
T cd00216 140 DQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSW 219 (488)
T ss_pred CCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCcc
Confidence 221 01111122 234555554 367888889988862221111100 0010
Q ss_pred -EEEe--CCcEEEEE-cCC-----------------CeEEEEEecCCEEEeccCCC--------------eEEEE-EeCC
Q 000744 1126 -ELTA--NAEIACFV-SPA-----------------TGVKVYNWSGAIKHINFNKH--------------VKSLV-MTGD 1169 (1306)
Q Consensus 1126 -sl~~--~~~~v~~s-~dg-----------------~~I~i~~~~~~~~l~~~~~~--------------V~sl~-~s~d 1169 (1306)
+..+ ....+.+. .++ ..+...+.+.....|.+... +..+. ..++
T Consensus 220 ~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~ 299 (488)
T cd00216 220 ASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGK 299 (488)
T ss_pred CCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCC
Confidence 1111 12233333 332 13555566555555643211 01111 1222
Q ss_pred ---EEEEEECCCcEEEEECCCCceeEEecCcccccCCccEEEEEEeCCcEEEEEE----------------ecCCCEEEE
Q 000744 1170 ---KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLLFAGGS----------------SVDGTAGKV 1230 (1306)
Q Consensus 1170 ---~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~----------------s~Dg~~I~I 1230 (1306)
.++.++.+|.+..+|..+|+.+..+... ...+..+|+..|+.+. ..++ .+.-
T Consensus 300 ~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~--------~~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G-~l~A 370 (488)
T cd00216 300 PVPAIVHAPKNGFFYVLDRTTGKLISARPEV--------EQPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKG-GLAA 370 (488)
T ss_pred eeEEEEEECCCceEEEEECCCCcEeeEeEee--------ccccccCCceEEEccccccccCcccccCCCCCCCce-EEEE
Confidence 4788899999999999999987754311 0112233433333221 1234 6888
Q ss_pred EECCCCceEEEEecC---------CCE--EEEEEcCcEEEEEECCCcEEEEECCCCeEEEEEec
Q 000744 1231 FSISSKTAVGSFTTG---------IDI--QHLAVNSDFIFTATKCGTIEVWLKERVTRVASVKA 1283 (1306)
Q Consensus 1231 WD~~t~~~l~~l~~~---------~~V--~sla~spd~Lasgs~Dg~I~IWd~~tg~~l~~l~~ 1283 (1306)
.|..+|+.+.+.... ... ..+....+.++.++.||.|+.+|..+|+.+-+.+.
T Consensus 371 lD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 371 LDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred EeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 899999888777633 111 23456667999999999999999999999888763
No 357
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.67 E-value=0.0013 Score=80.04 Aligned_cols=281 Identities=14% Similarity=0.123 Sum_probs=151.1
Q ss_pred cEEEEEe----CCCcEEEEeCCCceEEcccCCCCEEEEEEeCC--EEEEEECCCcEEEEeCCCCccceEEEEcccCccEE
Q 000744 1009 KALMNLS----SVNATELWHCNEVTELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVT 1082 (1306)
Q Consensus 1009 ~~Lasgs----~Dg~I~IWd~~~~~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~ 1082 (1306)
.++|.++ .-|.|.||--.+.........-.+++++|+|. .|++|-.-|.+.+|...+. +.......|+.+|.
T Consensus 28 PlfAVA~fS~er~GSVtIfadtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~--e~htv~~th~a~i~ 105 (1416)
T KOG3617|consen 28 PLFAVASFSPERGGSVTIFADTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTT--ETHTVVETHPAPIQ 105 (1416)
T ss_pred ceeEEEEecCCCCceEEEEecCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCc--eeeeeccCCCCCce
Confidence 4555544 34788888544322222222334678999996 7889999999999999886 55555567999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcCC-CceeEE--EeecCCCCeEEEEe--C--------CcEEEEEcCCCeEE-EEEe
Q 000744 1083 CLYVPSSGDKLYSGSLDKTIRVWSIKP-EEIHCL--QVHNVKEAVHELTA--N--------AEIACFVSPATGVK-VYNW 1148 (1306)
Q Consensus 1083 sl~fspdg~~L~Sgs~DgtI~VWdi~~-~~~~~i--~~~~~~~~V~sl~~--~--------~~~v~~s~dg~~I~-i~~~ 1148 (1306)
.+.||++|..++|+..-|.|.+|.... +++... ..+.....++-++| . ...+.++.|.+-+- .++|
T Consensus 106 ~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnw 185 (1416)
T KOG3617|consen 106 GLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNW 185 (1416)
T ss_pred eEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccC
Confidence 999999999999999999999998763 222211 12222333444433 0 11222222322111 2222
Q ss_pred cCCEEEeccCCCeEEEEEe--C-C-EEEEEECCCcEEEEECCCCceeEEecCccc----ccCCc-cEEEEEEe-CCcEEE
Q 000744 1149 SGAIKHINFNKHVKSLVMT--G-D-KLYCGCSGYSIQEVDLGNLTSTTFYAGTKK----LLGKQ-TIHSLHMH-NGLLFA 1218 (1306)
Q Consensus 1149 ~~~~~l~~~~~~V~sl~~s--~-d-~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~----l~gh~-~I~sl~~s-~~~~ll 1218 (1306)
. ....-.++.-+ + + .++.++.+|+|+..|-. |.+..+.+.... +.+.. .|..+.-. ....++
T Consensus 186 k-------~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq~-g~~~~V~k~dS~vQmLf~~~~eai~~i~e~lr~~l~~ 257 (1416)
T KOG3617|consen 186 K-------ESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQN-GRQRTVHKLDSEVQMLFMGYCEAISIIIEFLRDCLIF 257 (1416)
T ss_pred c-------cchhhccccccCCCCCcEEEEEcCCceEEEEcCC-CcEEEEEEccchHHHHHhcccceEEEEeeeceeeEEE
Confidence 2 11111122222 1 1 47788899999988754 333333322211 11111 33332211 222222
Q ss_pred EEE-----------------ecCCCEEEEEECCCC----ceEEEEecCCCEEEEEEcCc--EEEEEECCCcEEEEEC-CC
Q 000744 1219 GGS-----------------SVDGTAGKVFSISSK----TAVGSFTTGIDIQHLAVNSD--FIFTATKCGTIEVWLK-ER 1274 (1306)
Q Consensus 1219 as~-----------------s~Dg~~I~IWD~~t~----~~l~~l~~~~~V~sla~spd--~Lasgs~Dg~I~IWd~-~t 1274 (1306)
+-. +..| .|-+=. .+| .....+..+..++|++++.. .+..|...|.+.+|.- .+
T Consensus 258 v~~~G~~ee~~~vk~sgk~GgrqG-giA~sE-ssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~ 335 (1416)
T KOG3617|consen 258 VLAKGTSEERCAVKVSGKLGGRQG-GIACSE-SSGVLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNK 335 (1416)
T ss_pred ecCCCchHHhhhhhhccccCCccC-cccccc-ccccccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCc
Confidence 111 1111 111111 011 11112223556999999987 8888889999999953 32
Q ss_pred ---C---eEEEEEecccCCCCCCCeEEEEEcCCCC
Q 000744 1275 ---V---TRVASVKANNSGGGHAKITCLGTGVDGH 1303 (1306)
Q Consensus 1275 ---g---~~l~~l~~~~~~~~~~~V~slafSpdg~ 1303 (1306)
| +-.-++.+. ....+.|+.+.|.|--.
T Consensus 336 ~f~g~p~~d~w~l~~~--~e~~g~I~~i~Wg~~k~ 368 (1416)
T KOG3617|consen 336 GFQGDPTIDVWTLNGK--RESLGKISLIRWGPIKS 368 (1416)
T ss_pred cccCCCCcceEEecCc--hhhccceEEEEeccccc
Confidence 1 223333320 11227899999998543
No 358
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.67 E-value=5.4e-05 Score=81.50 Aligned_cols=69 Identities=16% Similarity=0.287 Sum_probs=57.3
Q ss_pred ccCcccccccCCcEEc-CCCCcccHHHHHHHHHcCCCCCCCCCCc-cCCCCCCCccHHHHHHHHHHHHHCCC
Q 000744 344 FVCPITGQIFNDPVTL-ETGQTYERKAIQEWLKRGNTTCPITRQP-LCSNSLPKTNYVLKRLITSWKEQYPD 413 (1306)
Q Consensus 344 ~~CpIc~~l~~dPv~~-~cGhtfc~~cI~~~~~~~~~~CP~c~~~-l~~~~l~~~N~~L~~li~~~~~~~~~ 413 (1306)
+.||.|..++++|+-+ .|||+||..||+..+-...+.||.|... +--..+ .|++..+.-++...+++.+
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l-~pD~dk~~EvE~~lkkq~~ 345 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGL-TPDIDKKLEVEKALKKQRK 345 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhcc-CccHHHHHHHHHHHHHHHH
Confidence 8999999999999976 7999999999999888778899999864 233445 4899888888888775543
No 359
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.66 E-value=0.0028 Score=78.82 Aligned_cols=303 Identities=16% Similarity=0.157 Sum_probs=191.7
Q ss_pred cCCCCHHHHHHHHHHHHHHhhhcCCCcccccccccccchHHHHHHHhcCCcHHHHHHHHHHHHHHhccCccccccccccC
Q 000744 498 CTSENLQECETAVLAIARLWKESKGDPGVHAYLLKPTIINGFAEILSASLSREVLRTSVYILSELMVADESVGDILTSVD 577 (1306)
Q Consensus 498 l~s~~~~~~e~Av~~i~~L~~~~~~~~~~~~~i~~~~~I~~Lv~~L~~~~~~~~~e~Av~~L~~L~s~~~~~~~~I~~~~ 577 (1306)
+.+.+.++-+.++..|.++....... ...+...+.|...|.+. ++.+|+.++..|..++..++. ...+....
T Consensus 47 L~~~~~e~v~~~~~iL~~~l~~~~~~------~l~~~~~~~L~~gL~h~-~~~Vr~l~l~~l~~~~~~~~~-~~~~~~~~ 118 (503)
T PF10508_consen 47 LNTSNREQVELICDILKRLLSALSPD------SLLPQYQPFLQRGLTHP-SPKVRRLALKQLGRIARHSEG-AAQLLVDN 118 (503)
T ss_pred HhhcChHHHHHHHHHHHHHHhccCHH------HHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCHH-HHHHhcCc
Confidence 44445544445555565555544311 12466677777777777 899999999999998654443 34444448
Q ss_pred CchHHHHHHHhcCh----HHHHHHHhccCC---CHHHHhhCCchHHHHHHhhcCCccccchhcccCchHHHHHHHHHHHc
Q 000744 578 SDFDCLAALLKNGL----GEAAVLIYQLRP---AFAQLSAHEFIPSLVQLVLNKTEEFDELQFVMEPKDAAIEMLEQILM 650 (1306)
Q Consensus 578 ~~i~~Lv~lLk~g~----~~Aa~aL~~L~~---~~~~i~~~g~i~~Lv~ll~~g~~~~~~~~~~~~~k~aa~~lL~~l~~ 650 (1306)
+.++.++.+|+.+. ..|+.+|-.|+. ....+...+.++.|..++.+.++..+ --+..++..+..
T Consensus 119 ~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR---------~Rv~el~v~i~~ 189 (503)
T PF10508_consen 119 ELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVR---------CRVYELLVEIAS 189 (503)
T ss_pred cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHH---------HHHHHHHHHHHh
Confidence 89999999999875 788889999976 44446677889999999988653332 134445555543
Q ss_pred cCCCCCchhhhhHhhcCCCHHHHHhhc--CChhHHHHHHHHHHhhhhccchhHHHHHHhcccchhhhhhhcCCchhHhHH
Q 000744 651 GGDKKSRSITALSLISANGIPALIKCL--DRVEVRRSIVSILLCCMHADKSCKTLIAKRIELSHVLDLFHDGNDSVRGIC 728 (1306)
Q Consensus 651 ~~~~~~~~~n~~~i~~~g~i~~Lv~~l--~~~~~~~~~~~~L~~~~~~~~~~r~~i~~~~~~~~l~~ll~~g~~~~k~~a 728 (1306)
. +++....+...|.++.++..| +..=-+.+++.+|..... ...+..++.+.|.++.+++++.......+..+
T Consensus 190 ~-----S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~ 263 (503)
T PF10508_consen 190 H-----SPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSS 263 (503)
T ss_pred c-----CHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccc
Confidence 3 367788888899999999999 455568889999987766 77789999999999999999986655544444
Q ss_pred HHHHHHHHhcchhh--hHHHHHHHhhhcCCcchHHHHHHHhhcCCCcchhhHHHHHHhhhcccCCcccc-ccHHHHHHHH
Q 000744 729 INFLSELVLLNRRT--FSNQILQVIRDEGSFSTMHTFLVYLQMAPMEQQPATASLLLQLDLLVEPRKMS-MYREEAVEAL 805 (1306)
Q Consensus 729 ~~~L~~L~~~~~~~--~~~~~l~~i~~~g~~~~m~~ll~~l~~~~~~~~~~~A~~l~~l~~l~~~~~~~-~~reeai~~l 805 (1306)
+.+...+.-...-. .-..++... -..++.+..++++..+..++.|-..++++..-.+..+.- .-..++++..
T Consensus 264 ~~l~g~~~f~g~la~~~~~~v~~~~-----p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~ 338 (503)
T PF10508_consen 264 LLLPGRMKFFGNLARVSPQEVLELY-----PAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHV 338 (503)
T ss_pred hhhhhHHHHHHHHHhcChHHHHHHH-----HHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHH
Confidence 43332221000000 001111111 122445556666777777777777777777655443222 2233444444
Q ss_pred HHHHhcCC---CchHHHHHHHHHHhc
Q 000744 806 IEALRRKD---FPNSQMMALDALLSL 828 (1306)
Q Consensus 806 ~~~l~~~~---~~~~q~~aa~~l~~l 828 (1306)
++..-..- ....|..+-.+|.++
T Consensus 339 l~~~~~~~~~~~~~lk~r~l~al~~i 364 (503)
T PF10508_consen 339 LKAIGDAIKSGSTELKLRALHALASI 364 (503)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 44333322 235666777777776
No 360
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=1.5e-05 Score=97.85 Aligned_cols=55 Identities=15% Similarity=0.350 Sum_probs=49.9
Q ss_pred CCCcccCcccccccCCcEEcCCCCcccHHHHHHHHHcCCCCCCCCCCccCCCCCC
Q 000744 340 PPKDFVCPITGQIFNDPVTLETGQTYERKAIQEWLKRGNTTCPITRQPLCSNSLP 394 (1306)
Q Consensus 340 ~~~~~~CpIc~~l~~dPv~~~cGhtfc~~cI~~~~~~~~~~CP~c~~~l~~~~l~ 394 (1306)
...-+.||.|..=.+|.|++.|||-||..|++...+.....||.|+..+...++.
T Consensus 640 yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~ 694 (698)
T KOG0978|consen 640 YKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVH 694 (698)
T ss_pred HHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccccc
Confidence 3466899999999999999999999999999999998889999999999877764
No 361
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.64 E-value=0.00061 Score=84.07 Aligned_cols=178 Identities=13% Similarity=0.133 Sum_probs=123.3
Q ss_pred cEEEEEeCCCcEEEEeCCCceEEcccC--CCCEEEEEEeCCEEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEE
Q 000744 1009 KALMNLSSVNATELWHCNEVTELDSST--NGEVLSLIHLKGRVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYV 1086 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~~~i~~~H--~~~V~sl~fspd~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~f 1086 (1306)
..++-|+-...+..+|..+.......| .+.|+-+..+...+++|...|+|.+-|.++. +.++++..|++.|..++.
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~--~~iht~~aHs~siSDfDv 225 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSF--ETIHTFDAHSGSISDFDV 225 (1118)
T ss_pred cceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcC--ceeeeeeccccceeeeec
Confidence 446667666777888888766555544 3348888888889999999999999999998 899999999999987665
Q ss_pred cCCCCEEEEEeC---------CCcEEEEEcCCCc-eeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEec
Q 000744 1087 PSSGDKLYSGSL---------DKTIRVWSIKPEE-IHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHIN 1156 (1306)
Q Consensus 1087 spdg~~L~Sgs~---------DgtI~VWdi~~~~-~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~ 1156 (1306)
.|+.|+++|. |..|+|||++.-. +.++.... .+.++-+.|.=
T Consensus 226 --~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~----------~P~flrf~Psl---------------- 277 (1118)
T KOG1275|consen 226 --QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY----------GPQFLRFHPSL---------------- 277 (1118)
T ss_pred --cCCeEEEeecccccccccccchhhhhhhhhhhccCCccccc----------Cchhhhhcccc----------------
Confidence 6889999985 5668999998752 11111111 11122222211
Q ss_pred cCCCeEEEEEeCCEEEEEECCCcEEEEECCCC-ce-eEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEE
Q 000744 1157 FNKHVKSLVMTGDKLYCGCSGYSIQEVDLGNL-TS-TTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFS 1232 (1306)
Q Consensus 1157 ~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~-~~-~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD 1232 (1306)
+..+++.+..|...+-|..+. .+ ..++. +.... .+..+++++++..++-+..+| .|.+|-
T Consensus 278 -----------~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~----v~p~~s~i~~fDiSsn~~alafgd~~g-~v~~wa 340 (1118)
T KOG1275|consen 278 -----------TTRLAVTSQSGQFQFVDTATLSNPPAGVKM----VNPNGSGISAFDISSNGDALAFGDHEG-HVNLWA 340 (1118)
T ss_pred -----------cceEEEEecccceeeccccccCCCccceeE----EccCCCcceeEEecCCCceEEEecccC-cEeeec
Confidence 124778888888888883321 11 11111 11112 588999999999898888888 799997
No 362
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=3.5e-05 Score=90.26 Aligned_cols=74 Identities=23% Similarity=0.416 Sum_probs=59.8
Q ss_pred CCCCCCCcccCcccccccCCcEEcCCCCcccHHHHHHHHHcCCCCCCCCCCccCCCCC----CCccHHHHHHHHHHHHH
Q 000744 336 SRSRPPKDFVCPITGQIFNDPVTLETGQTYERKAIQEWLKRGNTTCPITRQPLCSNSL----PKTNYVLKRLITSWKEQ 410 (1306)
Q Consensus 336 ~~~~~~~~~~CpIc~~l~~dPv~~~cGhtfc~~cI~~~~~~~~~~CP~c~~~l~~~~l----~~~N~~L~~li~~~~~~ 410 (1306)
.+..+..+|.|.||..++.+||+++|||+||..||.+.++. ...||.|+..+..... ..+|+.+..+|.+++..
T Consensus 77 ~~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~-~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~ 154 (398)
T KOG4159|consen 77 GPEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ-ETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG 154 (398)
T ss_pred cCccccchhhhhhhHhhcCCCccccccccccHHHHHHHhcc-CCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 45567899999999999999999999999999999998885 6679999988874322 12366677888877664
No 363
>PRK09687 putative lyase; Provisional
Probab=97.60 E-value=0.0015 Score=74.59 Aligned_cols=220 Identities=16% Similarity=0.096 Sum_probs=147.2
Q ss_pred chHHHHHHHhcCCcHHHHHHHHHHHHHHhccCccccccccccCCchHHHHHHHhcCh----HHHHHHHhccCCCHHHHhh
Q 000744 535 IINGFAEILSASLSREVLRTSVYILSELMVADESVGDILTSVDSDFDCLAALLKNGL----GEAAVLIYQLRPAFAQLSA 610 (1306)
Q Consensus 535 ~I~~Lv~~L~~~~~~~~~e~Av~~L~~L~s~~~~~~~~I~~~~~~i~~Lv~lLk~g~----~~Aa~aL~~L~~~~~~i~~ 610 (1306)
.+++|.+.|... +..++..|+.+|..+ . ...+++.++.++++.. ..|+.+|-.|...... .
T Consensus 24 ~~~~L~~~L~d~-d~~vR~~A~~aL~~~---~---------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~--~ 88 (280)
T PRK09687 24 NDDELFRLLDDH-NSLKRISSIRVLQLR---G---------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC--Q 88 (280)
T ss_pred cHHHHHHHHhCC-CHHHHHHHHHHHHhc---C---------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc--h
Confidence 388999999887 899999999999866 1 2567888899998875 5677788666431100 2
Q ss_pred CCchHHHHHH-hhcCCccccchhcccCchHHHHHHHHHHHccCCCCCchhhhhHhhcCCCHHHHHhhc--CChhHHHHHH
Q 000744 611 HEFIPSLVQL-VLNKTEEFDELQFVMEPKDAAIEMLEQILMGGDKKSRSITALSLISANGIPALIKCL--DRVEVRRSIV 687 (1306)
Q Consensus 611 ~g~i~~Lv~l-l~~g~~~~~~~~~~~~~k~aa~~lL~~l~~~~~~~~~~~n~~~i~~~g~i~~Lv~~l--~~~~~~~~~~ 687 (1306)
..++|.|..+ +.+.+... +..|+..|..+-... . .-.+.++..|...+ .+.+.|..++
T Consensus 89 ~~a~~~L~~l~~~D~d~~V---------R~~A~~aLG~~~~~~---~-------~~~~~a~~~l~~~~~D~~~~VR~~a~ 149 (280)
T PRK09687 89 DNVFNILNNLALEDKSACV---------RASAINATGHRCKKN---P-------LYSPKIVEQSQITAFDKSTNVRFAVA 149 (280)
T ss_pred HHHHHHHHHHHhcCCCHHH---------HHHHHHHHhcccccc---c-------ccchHHHHHHHHHhhCCCHHHHHHHH
Confidence 3477888888 44443222 335555555541110 0 01122345565666 5777888888
Q ss_pred HHHHhhhhccchhHHHHHHhcccchhhhhhhcCCchhHhHHHHHHHHHHhcchhhhHHHHHHHhhhcCCcchHHHHHHHh
Q 000744 688 SILLCCMHADKSCKTLIAKRIELSHVLDLFHDGNDSVRGICINFLSELVLLNRRTFSNQILQVIRDEGSFSTMHTFLVYL 767 (1306)
Q Consensus 688 ~~L~~~~~~~~~~r~~i~~~~~~~~l~~ll~~g~~~~k~~a~~~L~~L~~~~~~~~~~~~l~~i~~~g~~~~m~~ll~~l 767 (1306)
..|..+ .....+++|+.+|...+...|..|+..|-.+. . +.-.....|+..|
T Consensus 150 ~aLg~~-----------~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~-~----------------~~~~~~~~L~~~L 201 (280)
T PRK09687 150 FALSVI-----------NDEAAIPLLINLLKDPNGDVRNWAAFALNSNK-Y----------------DNPDIREAFVAML 201 (280)
T ss_pred HHHhcc-----------CCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCC-C----------------CCHHHHHHHHHHh
Confidence 887532 23447889999999988888999998885551 0 1112334577777
Q ss_pred hcCCCcchhhHHHHHHhhhcccCCccccccHHHHHHHHHHHHhcCCCchHHHHHHHHHHhccc
Q 000744 768 QMAPMEQQPATASLLLQLDLLVEPRKMSMYREEAVEALIEALRRKDFPNSQMMALDALLSLTG 830 (1306)
Q Consensus 768 ~~~~~~~~~~~A~~l~~l~~l~~~~~~~~~reeai~~l~~~l~~~~~~~~q~~aa~~l~~l~g 830 (1306)
+....+-+..++..|.++. .+.+|+.|++.|.... +...++.||.++++
T Consensus 202 ~D~~~~VR~~A~~aLg~~~-----------~~~av~~Li~~L~~~~---~~~~a~~ALg~ig~ 250 (280)
T PRK09687 202 QDKNEEIRIEAIIGLALRK-----------DKRVLSVLIKELKKGT---VGDLIIEAAGELGD 250 (280)
T ss_pred cCCChHHHHHHHHHHHccC-----------ChhHHHHHHHHHcCCc---hHHHHHHHHHhcCC
Confidence 7776767777777775543 3579999999999864 67789999999865
No 364
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.57 E-value=0.019 Score=71.39 Aligned_cols=311 Identities=15% Similarity=0.159 Sum_probs=193.2
Q ss_pred HhChhhHHHhhcCCCCHHHHHHHHHHHHHHhhhcCCCcccccccccccchHHHHHHHhcCCcHHHHHHHHHHHHHHhccC
Q 000744 487 INGLKPYVTCLCTSENLQECETAVLAIARLWKESKGDPGVHAYLLKPTIINGFAEILSASLSREVLRTSVYILSELMVAD 566 (1306)
Q Consensus 487 ~~~~~~~l~~Ll~s~~~~~~e~Av~~i~~L~~~~~~~~~~~~~i~~~~~I~~Lv~~L~~~~~~~~~e~Av~~L~~L~s~~ 566 (1306)
.....+.+...+.+++...++.++..|.++..++.+ ....+...+.++.++..|... +.++.+.|+.+|..|+...
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~---~~~~~~~~~l~~~i~~~L~~~-d~~Va~~A~~~L~~l~~~~ 150 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEG---AAQLLVDNELLPLIIQCLRDP-DLSVAKAAIKALKKLASHP 150 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHH---HHHHhcCccHHHHHHHHHcCC-cHHHHHHHHHHHHHHhCCc
Confidence 456677788888999999999999999999876653 234567899999999999888 9999999999999997654
Q ss_pred ccccccccccCCchHHHHHHHhcCh-------HHHHHHHhccCC-CHHHHhhCCchHHHHHHhhcCCccccchhcccCch
Q 000744 567 ESVGDILTSVDSDFDCLAALLKNGL-------GEAAVLIYQLRP-AFAQLSAHEFIPSLVQLVLNKTEEFDELQFVMEPK 638 (1306)
Q Consensus 567 ~~~~~~I~~~~~~i~~Lv~lLk~g~-------~~Aa~aL~~L~~-~~~~i~~~g~i~~Lv~ll~~g~~~~~~~~~~~~~k 638 (1306)
+ .-+.+.. .+.+..|..++.+.+ .+.++-|...++ ....+...|+++.|+..|.+.+--. +
T Consensus 151 ~-~~~~l~~-~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLv---------q 219 (503)
T PF10508_consen 151 E-GLEQLFD-SNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILV---------Q 219 (503)
T ss_pred h-hHHHHhC-cchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHH---------H
Confidence 4 4455654 555899999998832 566666766677 5566667999999999999833111 3
Q ss_pred HHHHHHHHHHHccCCCCCchhhhhHhhcCCCHHHHHhhc-CC-hhHHHHHHHHHHh-----hhhccchhHHHHHHhcccc
Q 000744 639 DAAIEMLEQILMGGDKKSRSITALSLISANGIPALIKCL-DR-VEVRRSIVSILLC-----CMHADKSCKTLIAKRIELS 711 (1306)
Q Consensus 639 ~aa~~lL~~l~~~~~~~~~~~n~~~i~~~g~i~~Lv~~l-~~-~~~~~~~~~~L~~-----~~~~~~~~r~~i~~~~~~~ 711 (1306)
-.|+.+|.+|... +.+..-+.+.|+++.|++.+ +. .+.+...+-+.-. .+..- +.-..+ ...|
T Consensus 220 lnalell~~La~~------~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~-~~~~v~---~~~p 289 (503)
T PF10508_consen 220 LNALELLSELAET------PHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV-SPQEVL---ELYP 289 (503)
T ss_pred HHHHHHHHHHHcC------hhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc-ChHHHH---HHHH
Confidence 4788888888653 58899999999999999999 21 1111222221110 11110 111111 1223
Q ss_pred hh----hhhhhcCCchhHhHHHHHHHHHHhcchhhhHH---------HHHHHhhhc---C----CcchHHHHHHHhhcCC
Q 000744 712 HV----LDLFHDGNDSVRGICINFLSELVLLNRRTFSN---------QILQVIRDE---G----SFSTMHTFLVYLQMAP 771 (1306)
Q Consensus 712 ~l----~~ll~~g~~~~k~~a~~~L~~L~~~~~~~~~~---------~~l~~i~~~---g----~~~~m~~ll~~l~~~~ 771 (1306)
.+ .+.+.++.+..+..|+..|-.++......... .+++.+... | .+..+|.|=..+...+
T Consensus 290 ~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~ 369 (503)
T PF10508_consen 290 AFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGT 369 (503)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCC
Confidence 33 44556778888999999998887554322211 122222211 1 1223444444443333
Q ss_pred CcchhhH-HHHHHhhhcccCCccccccHHHHHHHHHHHHhcCCCchHHHHHHHHHHhccce
Q 000744 772 MEQQPAT-ASLLLQLDLLVEPRKMSMYREEAVEALIEALRRKDFPNSQMMALDALLSLTGR 831 (1306)
Q Consensus 772 ~~~~~~~-A~~l~~l~~l~~~~~~~~~reeai~~l~~~l~~~~~~~~q~~aa~~l~~l~g~ 831 (1306)
..+...+ +..-.-++.+.+. ....++..+-++.|+..+.-+=+.|..|+.+
T Consensus 370 ~~~~~~i~~~~~~w~~~~~~~---------~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~ 421 (503)
T PF10508_consen 370 DRQDNDILSITESWYESLSGS---------PLSNLLMSLLKQPFPELRCAAYRLLQALAAQ 421 (503)
T ss_pred CCchHHHHHHHHHHHHHhcCC---------chHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 2221111 2222222333222 1111455556677777777777777777655
No 365
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.56 E-value=0.02 Score=69.63 Aligned_cols=217 Identities=11% Similarity=-0.028 Sum_probs=117.4
Q ss_pred CcEEEEeCCCc-eEEcccCCCCEEEEEEeCC--E-EEEEECC---CcEEEEeCCCCccceEEEEcccCccEEEEEEcCCC
Q 000744 1018 NATELWHCNEV-TELDSSTNGEVLSLIHLKG--R-VLSSHSD---GTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSG 1090 (1306)
Q Consensus 1018 g~I~IWd~~~~-~~i~~~H~~~V~sl~fspd--~-LaSgs~D---g~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg 1090 (1306)
..|.+=|.... .+..... +.+..-.|+|| . ++..+.+ ..|.++|+.++..+.+. ...+.+....|+|||
T Consensus 169 ~~l~~~d~dg~~~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt---~~~g~~~~~~~SPDG 244 (419)
T PRK04043 169 SNIVLADYTLTYQKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA---SSQGMLVVSDVSKDG 244 (419)
T ss_pred ceEEEECCCCCceeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe---cCCCcEEeeEECCCC
Confidence 34555454432 2222222 37788999995 3 5544443 56999999888433332 344556678899999
Q ss_pred CEEE-EEeCC--CcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEe
Q 000744 1091 DKLY-SGSLD--KTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMT 1167 (1306)
Q Consensus 1091 ~~L~-Sgs~D--gtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s 1167 (1306)
+.++ +.+.+ ..|.++|+.+++.+.+.... ..... ..|+|||+.|....-.
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~--~~d~~-------p~~SPDG~~I~F~Sdr------------------ 297 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKTLTQITNYP--GIDVN-------GNFVEDDKRIVFVSDR------------------ 297 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCcEEEcccCC--CccCc-------cEECCCCCEEEEEECC------------------
Confidence 8665 44434 45777787776543332221 11111 2388888744321110
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEecCcccccCCccEEEEEEeCCcEEEEEEecCC--------CEEEEEECCCCceE
Q 000744 1168 GDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLLFAGGSSVDG--------TAGKVFSISSKTAV 1239 (1306)
Q Consensus 1168 ~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~s~Dg--------~~I~IWD~~t~~~l 1239 (1306)
.....|+++|+.+++..+.... +. . ...|+|++..++-.+... ..|.+.|+.++..
T Consensus 298 -------~g~~~Iy~~dl~~g~~~rlt~~-----g~-~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~- 361 (419)
T PRK04043 298 -------LGYPNIFMKKLNSGSVEQVVFH-----GK-N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI- 361 (419)
T ss_pred -------CCCceEEEEECCCCCeEeCccC-----CC-c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-
Confidence 1113688888888776442211 11 1 237887665554443331 2688889888764
Q ss_pred EEEecCCCEEEEEEcCc--EEEEEE-CCC--cEEEEECCCCeEEEEEe
Q 000744 1240 GSFTTGIDIQHLAVNSD--FIFTAT-KCG--TIEVWLKERVTRVASVK 1282 (1306)
Q Consensus 1240 ~~l~~~~~V~sla~spd--~Lasgs-~Dg--~I~IWd~~tg~~l~~l~ 1282 (1306)
..+..........|+|| .|+..+ ..+ .+.+.++.. .....+.
T Consensus 362 ~~LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g-~~~~~l~ 408 (419)
T PRK04043 362 RRLTANGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY-NKSFLFP 408 (419)
T ss_pred EECCCCCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC-CeeEEee
Confidence 44443333346789998 343333 223 366667754 3334443
No 366
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.53 E-value=0.0083 Score=72.99 Aligned_cols=261 Identities=13% Similarity=0.075 Sum_probs=143.5
Q ss_pred cEEEEEeCCCcEEEEeCCCceEEc--c-cCCCCEEEEEEeCC--EEEEEECCCcEEEEeCCCCccceEEEE----cccCc
Q 000744 1009 KALMNLSSVNATELWHCNEVTELD--S-STNGEVLSLIHLKG--RVLSSHSDGTIKMWDSGKRVLRLIQEV----REHTR 1079 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~~~i~--~-~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t~~~~~i~~l----~~H~~ 1079 (1306)
++++-|++-|.+.+|+-....... . +..+.+..+..+++ +++.|+..|.|.++-++.+.......+ +.|..
T Consensus 46 ~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~ 125 (726)
T KOG3621|consen 46 EYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKC 125 (726)
T ss_pred ceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCc
Confidence 899999999999999976432221 1 23344555566664 788888889999998876421111111 24788
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc---eeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEec
Q 000744 1080 AVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEE---IHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHIN 1156 (1306)
Q Consensus 1080 ~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~---~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~ 1156 (1306)
.|++++|++++..+++|..-|+|..-.+.+.. ..........+.|-.+.+-+..+.++.--+.+....-.+++..++
T Consensus 126 rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~r~~Lc~tE~eti~QIG 205 (726)
T KOG3621|consen 126 RVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLVSTLTRCILCQTEAETITQIG 205 (726)
T ss_pred eEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceehHhhhhhhheeecchhHHHHhc
Confidence 99999999999999999999999888777621 111111223356666665333333333222222222122222222
Q ss_pred c---CCC-eEEEEEeCC-------EEEEEECCCcEEEEECCC-CceeEEecCc-------------cc--------c--c
Q 000744 1157 F---NKH-VKSLVMTGD-------KLYCGCSGYSIQEVDLGN-LTSTTFYAGT-------------KK--------L--L 1201 (1306)
Q Consensus 1157 ~---~~~-V~sl~~s~d-------~L~sgs~Dg~I~iwDl~~-~~~~~~~~~~-------------~~--------l--~ 1201 (1306)
. ++. -...+|-++ .|+++=-. .|+|..+- |....+..-. +. + .
T Consensus 206 ~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG--~RlWead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~ 283 (726)
T KOG3621|consen 206 KKPRKSLIDFGACFFPGQCKAQKPQIYCARPG--LRLWEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSG 283 (726)
T ss_pred CCCcCCccccceEEeeccccCCCceEEEecCC--CceEEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCC
Confidence 1 111 122333322 34444322 46676542 3333332100 00 0 0
Q ss_pred CCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEecCCCEEEEEEcCcEEEEEECCCcEEEEECCC
Q 000744 1202 GKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFTTGIDIQHLAVNSDFIFTATKCGTIEVWLKER 1274 (1306)
Q Consensus 1202 gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~~~~V~sla~spd~Lasgs~Dg~I~IWd~~t 1274 (1306)
.+. ....+.+-.++.+++-+ +-| |+|+|.++.+.+.-..+..+|..++.+.+-|+.--.||.+++..+.+
T Consensus 284 ~q~ls~~k~~~l~~~~vLa~t--e~G-iyv~d~~~~~v~l~se~~~DI~dVs~~~neiFvL~~d~~l~~~sv~s 354 (726)
T KOG3621|consen 284 TQHLSLSKSSTLHSDRVLAWT--EVG-IYVFDSNNSQVYLWSEGGHDILDVSHCGNEIFVLNLDRGLKVESVAS 354 (726)
T ss_pred ccccccceeEEeecceEEEee--cce-EEEEEeccceEEEeecCCCceeEEeecCceEEEEecCCceeEEEeeh
Confidence 111 22222222333444433 443 99999888776655556777888888888555555677677766544
No 367
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.50 E-value=7e-05 Score=89.22 Aligned_cols=70 Identities=23% Similarity=0.418 Sum_probs=56.6
Q ss_pred CCCCcccCcccccccCCcEE-cCCCCcccHHHHHHHHHcCCCCCCCCCCccCCCCCCCccHHHHHHHHHHHH
Q 000744 339 RPPKDFVCPITGQIFNDPVT-LETGQTYERKAIQEWLKRGNTTCPITRQPLCSNSLPKTNYVLKRLITSWKE 409 (1306)
Q Consensus 339 ~~~~~~~CpIc~~l~~dPv~-~~cGhtfc~~cI~~~~~~~~~~CP~c~~~l~~~~l~~~N~~L~~li~~~~~ 409 (1306)
.+++++.||+|..++.||+. +.|||.||+.|+..|+.. +..||.|+..+.....+.....+++.+.+|--
T Consensus 17 ~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~i 87 (391)
T KOG0297|consen 17 PLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKLPI 87 (391)
T ss_pred CCcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhccc
Confidence 47788999999999999998 599999999999999998 88899999888776665223445555555433
No 368
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.49 E-value=0.0005 Score=75.24 Aligned_cols=102 Identities=8% Similarity=0.038 Sum_probs=65.0
Q ss_pred CCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEE---EecCC------CEEEEEEcCc---EEEEEECCCcEE
Q 000744 1202 GKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGS---FTTGI------DIQHLAVNSD---FIFTATKCGTIE 1268 (1306)
Q Consensus 1202 gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~---l~~~~------~V~sla~spd---~Lasgs~Dg~I~ 1268 (1306)
.|. -|+++.++.+...+.++ |.-.|.+|++.-...-.. ++.+. -|++..|+|. .+.-.+..|.|+
T Consensus 170 aH~yhiNSiS~NsD~et~lSa--DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik 247 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSA--DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK 247 (460)
T ss_pred cceeEeeeeeecCchheeeec--cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence 566 78999998776666665 443799999865332222 22222 2899999997 555666789999
Q ss_pred EEECCCCe------EEEEEecccCCCC------CCCeEEEEEcCCCCccC
Q 000744 1269 VWLKERVT------RVASVKANNSGGG------HAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1269 IWd~~tg~------~l~~l~~~~~~~~------~~~V~slafSpdg~~La 1306 (1306)
+-|++... .+...+... ..+ ...|.++.|+++|+||+
T Consensus 248 l~DlRq~alcdn~~klfe~~~D~-v~~~ff~eivsSISD~kFs~ngryIl 296 (460)
T COG5170 248 LNDLRQSALCDNSKKLFELTIDG-VDVDFFEEIVSSISDFKFSDNGRYIL 296 (460)
T ss_pred ehhhhhhhhccCchhhhhhccCc-ccchhHHHHhhhhcceEEcCCCcEEE
Confidence 99998321 111111100 011 15788999999999874
No 369
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.49 E-value=0.0095 Score=79.43 Aligned_cols=257 Identities=16% Similarity=0.055 Sum_probs=137.1
Q ss_pred HhChhhHHHhhcCCCCHHHHHHHHHHHHHHhhhcCCCcccccccccccchHHHHHHHhcCCcHHHHHHHHHHHHHHhccC
Q 000744 487 INGLKPYVTCLCTSENLQECETAVLAIARLWKESKGDPGVHAYLLKPTIINGFAEILSASLSREVLRTSVYILSELMVAD 566 (1306)
Q Consensus 487 ~~~~~~~l~~Ll~s~~~~~~e~Av~~i~~L~~~~~~~~~~~~~i~~~~~I~~Lv~~L~~~~~~~~~e~Av~~L~~L~s~~ 566 (1306)
.......|...|.+++...+..|+..|..+. .+.+++.|+..|... +..++..|+.+|..+..
T Consensus 619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~--------------~~~~~~~L~~aL~D~-d~~VR~~Aa~aL~~l~~-- 681 (897)
T PRK13800 619 DAPSVAELAPYLADPDPGVRRTAVAVLTETT--------------PPGFGPALVAALGDG-AAAVRRAAAEGLRELVE-- 681 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHhhhc--------------chhHHHHHHHHHcCC-CHHHHHHHHHHHHHHHh--
Confidence 3334456677788999999999999986654 245689999999777 89999999999987721
Q ss_pred ccccccccccCCchHHHHHHHhcCh----HHHHHHHhccCCCHHHHhhCCchHHHHHHhhcCCccccchhcccCchHHHH
Q 000744 567 ESVGDILTSVDSDFDCLAALLKNGL----GEAAVLIYQLRPAFAQLSAHEFIPSLVQLVLNKTEEFDELQFVMEPKDAAI 642 (1306)
Q Consensus 567 ~~~~~~I~~~~~~i~~Lv~lLk~g~----~~Aa~aL~~L~~~~~~i~~~g~i~~Lv~ll~~g~~~~~~~~~~~~~k~aa~ 642 (1306)
.....+.|..+|++.. ..|+.+|-.+. .+-.+.|+..|.+.+...+ .+|+
T Consensus 682 ---------~~~~~~~L~~~L~~~d~~VR~~A~~aL~~~~--------~~~~~~l~~~L~D~d~~VR---------~~Av 735 (897)
T PRK13800 682 ---------VLPPAPALRDHLGSPDPVVRAAALDVLRALR--------AGDAALFAAALGDPDHRVR---------IEAV 735 (897)
T ss_pred ---------ccCchHHHHHHhcCCCHHHHHHHHHHHHhhc--------cCCHHHHHHHhcCCCHHHH---------HHHH
Confidence 1123456667776654 22333332222 1223456666665542221 1222
Q ss_pred HHHHHH---------HccCCCCCchhhhhHhhc-----CCCHHHHHhhc--CChhHHHHHHHHHHhhhhccchhHHHHHH
Q 000744 643 EMLEQI---------LMGGDKKSRSITALSLIS-----ANGIPALIKCL--DRVEVRRSIVSILLCCMHADKSCKTLIAK 706 (1306)
Q Consensus 643 ~lL~~l---------~~~~~~~~~~~n~~~i~~-----~g~i~~Lv~~l--~~~~~~~~~~~~L~~~~~~~~~~r~~i~~ 706 (1306)
..|..+ +...+......-..++.. .++++.|+.++ ....-|.+|+..|-.+...
T Consensus 736 ~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~---------- 805 (897)
T PRK13800 736 RALVSVDDVESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGCP---------- 805 (897)
T ss_pred HHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc----------
Confidence 222211 100000000000001111 11234555555 3344444444444322100
Q ss_pred hcccchhhhhhhcCCchhHhHHHHHHHHHHhcchhhhHHHHHHHhhhcCCcchHHHHHHHhhcCCCcchhhHHHHHHhhh
Q 000744 707 RIELSHVLDLFHDGNDSVRGICINFLSELVLLNRRTFSNQILQVIRDEGSFSTMHTFLVYLQMAPMEQQPATASLLLQLD 786 (1306)
Q Consensus 707 ~~~~~~l~~ll~~g~~~~k~~a~~~L~~L~~~~~~~~~~~~l~~i~~~g~~~~m~~ll~~l~~~~~~~~~~~A~~l~~l~ 786 (1306)
...+++++..|.+.....|..|+.+|-.+ |+-..+..|+..|+.....=+..++..|.++.
T Consensus 806 ~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l-------------------~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~ 866 (897)
T PRK13800 806 PDDVAAATAALRASAWQVRQGAARALAGA-------------------AADVAVPALVEALTDPHLDVRKAAVLALTRWP 866 (897)
T ss_pred chhHHHHHHHhcCCChHHHHHHHHHHHhc-------------------cccchHHHHHHHhcCCCHHHHHHHHHHHhccC
Confidence 00112344445555555555555555332 22333456888888777777777788887752
Q ss_pred cccCCccccccHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 000744 787 LLVEPRKMSMYREEAVEALIEALRRKDFPNSQMMALDALL 826 (1306)
Q Consensus 787 ~l~~~~~~~~~reeai~~l~~~l~~~~~~~~q~~aa~~l~ 826 (1306)
. -+.++++|..+|...+ ..++..|+++|.
T Consensus 867 ~----------~~~a~~~L~~al~D~d-~~Vr~~A~~aL~ 895 (897)
T PRK13800 867 G----------DPAARDALTTALTDSD-ADVRAYARRALA 895 (897)
T ss_pred C----------CHHHHHHHHHHHhCCC-HHHHHHHHHHHh
Confidence 1 2457777888777553 568888888874
No 370
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.49 E-value=8.8e-05 Score=66.41 Aligned_cols=39 Identities=38% Similarity=0.815 Sum_probs=31.7
Q ss_pred CcccccccCCc-------------EEcCCCCcccHHHHHHHHHcCCCCCCCCC
Q 000744 346 CPITGQIFNDP-------------VTLETGQTYERKAIQEWLKRGNTTCPITR 385 (1306)
Q Consensus 346 CpIc~~l~~dP-------------v~~~cGhtfc~~cI~~~~~~~~~~CP~c~ 385 (1306)
|+||++-|.+| +..+|||.|-..||.+|++. +.+||+||
T Consensus 22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR 73 (73)
T PF12678_consen 22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR 73 (73)
T ss_dssp ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence 99999988433 34589999999999999987 44899997
No 371
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.46 E-value=0.012 Score=69.57 Aligned_cols=241 Identities=12% Similarity=0.126 Sum_probs=133.3
Q ss_pred EEEEEEeCC--EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCC-----------CcEEEE
Q 000744 1039 VLSLIHLKG--RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLD-----------KTIRVW 1105 (1306)
Q Consensus 1039 V~sl~fspd--~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~D-----------gtI~VW 1105 (1306)
=+-+.|||. +|+|-..-| |.+|--.+- ..++.| .|. .|.-+.|||..++|+|-|.. ..++||
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f--~r~~RF-~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IW 287 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESF--DRIQRF-YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIW 287 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccH--HHHHhc-cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEE
Confidence 457899994 888888777 788976654 556666 365 48899999999999987632 578999
Q ss_pred EcCCCc-eeEEEeecCCCCeEEEEeCCcEEEEEcCCC--------eEEEEEecCCEEEec----cCCCeEEEEEeCCE-E
Q 000744 1106 SIKPEE-IHCLQVHNVKEAVHELTANAEIACFVSPAT--------GVKVYNWSGAIKHIN----FNKHVKSLVMTGDK-L 1171 (1306)
Q Consensus 1106 di~~~~-~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~--------~I~i~~~~~~~~l~~----~~~~V~sl~~s~d~-L 1171 (1306)
|+.+|. .+.+..+..+..++.+ +-|+.|++ .|.++.... .-+++ .-..|....|+|.. +
T Consensus 288 DI~tG~lkrsF~~~~~~~~~WP~------frWS~DdKy~Arm~~~sisIyEtps-f~lld~Kslki~gIr~FswsP~~~l 360 (698)
T KOG2314|consen 288 DIATGLLKRSFPVIKSPYLKWPI------FRWSHDDKYFARMTGNSISIYETPS-FMLLDKKSLKISGIRDFSWSPTSNL 360 (698)
T ss_pred EccccchhcceeccCCCccccce------EEeccCCceeEEeccceEEEEecCc-eeeecccccCCccccCcccCCCcce
Confidence 999996 3333333322333332 22344433 344444332 22222 13567777888762 1
Q ss_pred E---EEECC---CcEEEEECCCCceeEEecCcccccCCccEEE--EEEeCCcEEEEEEecCC-------C---EEEEEEC
Q 000744 1172 Y---CGCSG---YSIQEVDLGNLTSTTFYAGTKKLLGKQTIHS--LHMHNGLLFAGGSSVDG-------T---AGKVFSI 1233 (1306)
Q Consensus 1172 ~---sgs~D---g~I~iwDl~~~~~~~~~~~~~~l~gh~~I~s--l~~s~~~~llas~s~Dg-------~---~I~IWD~ 1233 (1306)
+ +-..+ ..+.+..+.+++.+++-. -+ .|.. +.|..++.+++.- .|. + .+.|+.+
T Consensus 361 lAYwtpe~~~~parvtL~evPs~~~iRt~n------lf-nVsDckLhWQk~gdyLcvk-vdR~tK~~~~g~f~n~eIfri 432 (698)
T KOG2314|consen 361 LAYWTPETNNIPARVTLMEVPSKREIRTKN------LF-NVSDCKLHWQKSGDYLCVK-VDRHTKSKVKGQFSNLEIFRI 432 (698)
T ss_pred EEEEcccccCCcceEEEEecCccceeeecc------ce-eeeccEEEeccCCcEEEEE-EEeeccccccceEeeEEEEEe
Confidence 1 11111 123344444444333211 01 2222 3344455554432 111 0 2445554
Q ss_pred CCCc-eEEEEecCCCEEEEEEcCc---EE-EEEE-CCCcEEEEECCC-C---eEEEEEecccCCCCCCCeEEEEEcCCCC
Q 000744 1234 SSKT-AVGSFTTGIDIQHLAVNSD---FI-FTAT-KCGTIEVWLKER-V---TRVASVKANNSGGGHAKITCLGTGVDGH 1303 (1306)
Q Consensus 1234 ~t~~-~l~~l~~~~~V~sla~spd---~L-asgs-~Dg~I~IWd~~t-g---~~l~~l~~~~~~~~~~~V~slafSpdg~ 1303 (1306)
+... ++..+.-...|...+|.|. +. ++|- ...++.+|.+++ + ..+..+.. ...+.+.|+|.|+
T Consensus 433 reKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk-------~~~N~vfwsPkG~ 505 (698)
T KOG2314|consen 433 REKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK-------KFANTVFWSPKGR 505 (698)
T ss_pred eccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc-------cccceEEEcCCCc
Confidence 4432 3334444556889999886 32 2332 236899998884 2 23444431 3467899999999
Q ss_pred ccC
Q 000744 1304 PYK 1306 (1306)
Q Consensus 1304 ~La 1306 (1306)
++|
T Consensus 506 fvv 508 (698)
T KOG2314|consen 506 FVV 508 (698)
T ss_pred EEE
Confidence 875
No 372
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.42 E-value=0.042 Score=66.31 Aligned_cols=68 Identities=7% Similarity=-0.001 Sum_probs=55.3
Q ss_pred cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEecCCCEEEEEEcCc--EEEEEECCCcEEEEECCC
Q 000744 1205 TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFTTGIDIQHLAVNSD--FIFTATKCGTIEVWLKER 1274 (1306)
Q Consensus 1205 ~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~~~~V~sla~spd--~Lasgs~Dg~I~IWd~~t 1274 (1306)
.|.+++++|+...++.|+.|| +|.+||...+..... +....++.++|||+ ++++|+..|.+.+||+.-
T Consensus 261 ~v~~ca~sp~E~kLvlGC~Dg-SiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCEDG-SIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred cceEEecCcccceEEEEecCC-eEEEEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 789999998777777777898 899999877643322 44556899999999 999999999999999853
No 373
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.0035 Score=71.59 Aligned_cols=187 Identities=13% Similarity=0.142 Sum_probs=137.2
Q ss_pred CCCCHHHHHHHHHHHHHHhhhcCCCcccccccccccchHHHHHHHhcCCcHHHHHHHHHHHHHHhccCccccccccccCC
Q 000744 499 TSENLQECETAVLAIARLWKESKGDPGVHAYLLKPTIINGFAEILSASLSREVLRTSVYILSELMVADESVGDILTSVDS 578 (1306)
Q Consensus 499 ~s~~~~~~e~Av~~i~~L~~~~~~~~~~~~~i~~~~~I~~Lv~~L~~~~~~~~~e~Av~~L~~L~s~~~~~~~~I~~~~~ 578 (1306)
.+.++++++.|...|..+...-+|- .-+..-|+..+++..|.++ +.++|+.|+.+|...+..|+...+.+.+
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnA----ndl~~~ggl~~ll~~l~~~-~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E--- 164 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNA----NDLISLGGLVPLLGYLENS-DAELRELAARVIGTAVQNNPKSQEQVIE--- 164 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhH----HhHhhccCHHHHHHHhcCC-cHHHHHHHHHHHHHHHhcCHHHHHHHHH---
Confidence 4568999999999999999877644 4788899999999988888 9999999999999998888755555544
Q ss_pred chHHHHHHHhcChHHHHHHHhccCCCHHHHhhCCchHHHHHHhhcCCccccchhcccCchHHHHHHHHHHHccCCCCCch
Q 000744 579 DFDCLAALLKNGLGEAAVLIYQLRPAFAQLSAHEFIPSLVQLVLNKTEEFDELQFVMEPKDAAIEMLEQILMGGDKKSRS 658 (1306)
Q Consensus 579 ~i~~Lv~lLk~g~~~Aa~aL~~L~~~~~~i~~~g~i~~Lv~ll~~g~~~~~~~~~~~~~k~aa~~lL~~l~~~~~~~~~~ 658 (1306)
.|+.+.|+.+|..-+ +.+-+.+|.+.+..|+..+ .
T Consensus 165 --------------------------------~~~L~~Ll~~ls~~~--------~~~~r~kaL~AissLIRn~-----~ 199 (342)
T KOG2160|consen 165 --------------------------------LGALSKLLKILSSDD--------PNTVRTKALFAISSLIRNN-----K 199 (342)
T ss_pred --------------------------------cccHHHHHHHHccCC--------CchHHHHHHHHHHHHHhcC-----c
Confidence 455555555555332 3333556666666666543 3
Q ss_pred hhhhHhhcCCCHHHHHhhc--C--ChhHHHHHHHHHHhhhhccchhHHHHHHhcccchhhhhhhcCCchhHhHHHHHHHH
Q 000744 659 ITALSLISANGIPALIKCL--D--RVEVRRSIVSILLCCMHADKSCKTLIAKRIELSHVLDLFHDGNDSVRGICINFLSE 734 (1306)
Q Consensus 659 ~n~~~i~~~g~i~~Lv~~l--~--~~~~~~~~~~~L~~~~~~~~~~r~~i~~~~~~~~l~~ll~~g~~~~k~~a~~~L~~ 734 (1306)
-...+....+|...|..++ + ++.-+..++.++...++.+.+.+..+...+-.-.++.+........+|+|+.++++
T Consensus 200 ~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~ 279 (342)
T KOG2160|consen 200 PGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLS 279 (342)
T ss_pred HHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHH
Confidence 4456778889999999999 2 44555666667777888888888744444444455667778888999999999988
Q ss_pred HHhc
Q 000744 735 LVLL 738 (1306)
Q Consensus 735 L~~~ 738 (1306)
++..
T Consensus 280 ~l~~ 283 (342)
T KOG2160|consen 280 LLSE 283 (342)
T ss_pred HHHH
Confidence 8643
No 374
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.41 E-value=0.012 Score=68.05 Aligned_cols=149 Identities=10% Similarity=0.076 Sum_probs=110.6
Q ss_pred cEEEEEeCCCcEEEEeCCCceEEcccCCCCEEEEEEeC--CEEEEEECCC-cEEEEeCCCCccceEEEEcccCccEEEEE
Q 000744 1009 KALMNLSSVNATELWHCNEVTELDSSTNGEVLSLIHLK--GRVLSSHSDG-TIKMWDSGKRVLRLIQEVREHTRAVTCLY 1085 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~~~i~~~H~~~V~sl~fsp--d~LaSgs~Dg-~I~vWd~~t~~~~~i~~l~~H~~~V~sl~ 1085 (1306)
++++..|. |...|.+.-....+..+|.+.|.-..+.. +-++.|..|| .+-|+|..++ .+..+...-+.|.++.
T Consensus 333 d~ia~VSR-GkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~---e~kr~e~~lg~I~av~ 408 (668)
T COG4946 333 DYIALVSR-GKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG---EVKRIEKDLGNIEAVK 408 (668)
T ss_pred cEEEEEec-CcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCc---eEEEeeCCccceEEEE
Confidence 67777777 88888887777888889999998888764 4899999999 8999999997 3556667778899999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEE
Q 000744 1086 VPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLV 1165 (1306)
Q Consensus 1086 fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~ 1165 (1306)
.+++|++++.+.....+-+.|+.+++.+.+... ..+-|+.+. ++++++.+.-..
T Consensus 409 vs~dGK~~vvaNdr~el~vididngnv~~idkS-~~~lItdf~-------~~~nsr~iAYaf------------------ 462 (668)
T COG4946 409 VSPDGKKVVVANDRFELWVIDIDNGNVRLIDKS-EYGLITDFD-------WHPNSRWIAYAF------------------ 462 (668)
T ss_pred EcCCCcEEEEEcCceEEEEEEecCCCeeEeccc-ccceeEEEE-------EcCCceeEEEec------------------
Confidence 999999999999888899999999865444322 235677776 666665222110
Q ss_pred EeCCEEEEEECCCcEEEEECCCCceeEE
Q 000744 1166 MTGDKLYCGCSGYSIQEVDLGNLTSTTF 1193 (1306)
Q Consensus 1166 ~s~d~L~sgs~Dg~I~iwDl~~~~~~~~ 1193 (1306)
| .|-....|++||+.+++....
T Consensus 463 --P----~gy~tq~Iklydm~~~Kiy~v 484 (668)
T COG4946 463 --P----EGYYTQSIKLYDMDGGKIYDV 484 (668)
T ss_pred --C----cceeeeeEEEEecCCCeEEEe
Confidence 1 222235688898888776543
No 375
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.40 E-value=0.025 Score=74.97 Aligned_cols=217 Identities=10% Similarity=0.021 Sum_probs=129.0
Q ss_pred cCccEEEEEEcCCCCEEEEEeCCCcEEEE----EcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCE
Q 000744 1077 HTRAVTCLYVPSSGDKLYSGSLDKTIRVW----SIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAI 1152 (1306)
Q Consensus 1077 H~~~V~sl~fspdg~~L~Sgs~DgtI~VW----di~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~ 1152 (1306)
..+.|.++.|-++...++.+..+|.|.+. +..+...+++...+ ..|.+++ |+||+..+.+..-+++.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd--~GI~a~~-------WSPD~Ella~vT~~~~l 144 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVD--SGILAAS-------WSPDEELLALVTGEGNL 144 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEc--CcEEEEE-------ECCCcCEEEEEeCCCEE
Confidence 34679999999999999999999999999 77766667776666 7899988 78888777766666555
Q ss_pred EEecc-CCCeEEEEEeC-----CEEEEEECCCcEEEEECCCCceeE------Eec--CcccccCCc-cEEEEEEeCCcEE
Q 000744 1153 KHINF-NKHVKSLVMTG-----DKLYCGCSGYSIQEVDLGNLTSTT------FYA--GTKKLLGKQ-TIHSLHMHNGLLF 1217 (1306)
Q Consensus 1153 ~l~~~-~~~V~sl~~s~-----d~L~sgs~Dg~I~iwDl~~~~~~~------~~~--~~~~l~gh~-~I~sl~~s~~~~l 1217 (1306)
.+... -..+.-....+ +..++.|....=.-|.=+.|+... +.+ ....+. .. .-..|+|-.|+.|
T Consensus 145 ~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~y 223 (928)
T PF04762_consen 145 LLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEY 223 (928)
T ss_pred EEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcE
Confidence 44432 12233333321 234444433221111111111100 000 000111 22 4467889877766
Q ss_pred EEEEec---CC--CEEEEEECCCCceEEEEec-CCCEEEEEEcCc--EEEEEEC---CCcEEEEECCCCeEEEEEecccC
Q 000744 1218 AGGSSV---DG--TAGKVFSISSKTAVGSFTT-GIDIQHLAVNSD--FIFTATK---CGTIEVWLKERVTRVASVKANNS 1286 (1306)
Q Consensus 1218 las~s~---Dg--~~I~IWD~~t~~~l~~l~~-~~~V~sla~spd--~Lasgs~---Dg~I~IWd~~tg~~l~~l~~~~~ 1286 (1306)
++.++. ++ +.||||+-+ |....+-.. .+--.+++|.|. +|++... ...|.+|..+ |-.-..|.-. .
T Consensus 224 FAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~-~ 300 (928)
T PF04762_consen 224 FAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLR-F 300 (928)
T ss_pred EEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecC-C
Confidence 666654 33 589999954 655444332 122457899887 6766653 3567777764 4444555431 0
Q ss_pred CCCCCCeEEEEEcCCCCccC
Q 000744 1287 GGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1287 ~~~~~~V~slafSpdg~~La 1306 (1306)
......|..+.|++|+..||
T Consensus 301 ~~~~~~v~~l~Wn~ds~iLA 320 (928)
T PF04762_consen 301 DPEEEKVIELAWNSDSEILA 320 (928)
T ss_pred CCCCceeeEEEECCCCCEEE
Confidence 12346899999999999885
No 376
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=97.39 E-value=0.00074 Score=86.59 Aligned_cols=226 Identities=14% Similarity=0.077 Sum_probs=168.7
Q ss_pred HHHHHHHHHHHHHHhhhcCCCcccccccc-cccchHHHHHHHhcCCcHHHHHHHHHHHHHHhccCccccccccccCCchH
Q 000744 503 LQECETAVLAIARLWKESKGDPGVHAYLL-KPTIINGFAEILSASLSREVLRTSVYILSELMVADESVGDILTSVDSDFD 581 (1306)
Q Consensus 503 ~~~~e~Av~~i~~L~~~~~~~~~~~~~i~-~~~~I~~Lv~~L~~~~~~~~~e~Av~~L~~L~s~~~~~~~~I~~~~~~i~ 581 (1306)
...+..|..+|.||...+.+|. +.++ ..|+++.+|..|.+. .++.++..+.+|-||.-+-+.|.+.+.+..|.+-
T Consensus 365 ~aLRrYa~MALTNLTFGDv~NK---a~LCs~rgfMeavVAQL~s~-peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVt 440 (2195)
T KOG2122|consen 365 NALRRYAGMALTNLTFGDVANK---ATLCSQRGFMEAVVAQLISA-PEELLQVYASVLRNLSWRADSNMKKVLRETGSVT 440 (2195)
T ss_pred HHHHHHHHHHhhccccccccch---hhhhhhhhHHHHHHHHHhcC-hHHHHHHHHHHHHhccccccccHHHHHHhhhhHH
Confidence 4456778999999999887653 5554 689999999999998 7889999999999999999999999999889999
Q ss_pred HHHHHH-hc---ChHHH-HHHHhccCC----CHHHHhh-CCchHHHHHHhhcCCccccchhcccCchHHHHHHHHHHHcc
Q 000744 582 CLAALL-KN---GLGEA-AVLIYQLRP----AFAQLSA-HEFIPSLVQLVLNKTEEFDELQFVMEPKDAAIEMLEQILMG 651 (1306)
Q Consensus 582 ~Lv~lL-k~---g~~~A-a~aL~~L~~----~~~~i~~-~g~i~~Lv~ll~~g~~~~~~~~~~~~~k~aa~~lL~~l~~~ 651 (1306)
.|+..- ++ .+..| .-|||||+. ||+.|-+ -|++.-||.+|.-......+ . ==+-|-.||-+...+
T Consensus 441 aLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tL-a----IIEsaGGILRNVSS~ 515 (2195)
T KOG2122|consen 441 ALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTL-A----IIESAGGILRNVSSL 515 (2195)
T ss_pred HHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchh-h----hhhcCccHHHHHHhH
Confidence 997764 33 23444 469999976 9999987 79999999999875422111 0 011233455554433
Q ss_pred CCCCCchhhhhHhhcCCCHHHHHhhc--CChhHHHHHHHHHHhhhhccchhHHHHHHhcccchhhhhhhcCCchhHhHHH
Q 000744 652 GDKKSRSITALSLISANGIPALIKCL--DRVEVRRSIVSILLCCMHADKSCKTLIAKRIELSHVLDLFHDGNDSVRGICI 729 (1306)
Q Consensus 652 ~~~~~~~~n~~~i~~~g~i~~Lv~~l--~~~~~~~~~~~~L~~~~~~~~~~r~~i~~~~~~~~l~~ll~~g~~~~k~~a~ 729 (1306)
. +++..++..+-+-.-+..|++.| .+.--=-++-+.|.++..-+...-.+|-+.++++-|..|+++....--+-++
T Consensus 516 I--At~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSa 593 (2195)
T KOG2122|consen 516 I--ATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSA 593 (2195)
T ss_pred h--hccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHH
Confidence 2 55556666666667777777777 2222223456677777777777889999999999999999999988888888
Q ss_pred HHHHHHHhcc
Q 000744 730 NFLSELVLLN 739 (1306)
Q Consensus 730 ~~L~~L~~~~ 739 (1306)
.+|.+|+...
T Consensus 594 aALrNLln~R 603 (2195)
T KOG2122|consen 594 AALRNLLNFR 603 (2195)
T ss_pred HHHHHHhcCC
Confidence 9998997554
No 377
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.35 E-value=0.029 Score=67.20 Aligned_cols=195 Identities=13% Similarity=0.131 Sum_probs=94.5
Q ss_pred EcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEE
Q 000744 1074 VREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIK 1153 (1306)
Q Consensus 1074 l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~ 1153 (1306)
+....++|++++.|.-| +++.|..+|++.|.|++...+-....... . . ...
T Consensus 82 ~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~-------~-------~-~~~------------- 132 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRE-------S-------F-LSK------------- 132 (395)
T ss_dssp E---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG-----------------T-S-------------
T ss_pred eeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccc-------c-------c-ccc-------------
Confidence 34456789999987545 89999999999999998764211111111 0 0 000
Q ss_pred EeccCCCeEEEEEe-----CC-----EEEEEECCCcEEEEECC-C--CceeEEecCcccccCCc-cEEEEE-EeC-----
Q 000744 1154 HINFNKHVKSLVMT-----GD-----KLYCGCSGYSIQEVDLG-N--LTSTTFYAGTKKLLGKQ-TIHSLH-MHN----- 1213 (1306)
Q Consensus 1154 l~~~~~~V~sl~~s-----~d-----~L~sgs~Dg~I~iwDl~-~--~~~~~~~~~~~~l~gh~-~I~sl~-~s~----- 1213 (1306)
.....|+++.|. +| .+++|+..|.+.+|.+. . +.-...+.+.. ..+. +|..+. ++.
T Consensus 133 --~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~--~~~~~~i~~I~~i~~~~G~~ 208 (395)
T PF08596_consen 133 --SSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGAT--TNHDSPILSIIPINADTGES 208 (395)
T ss_dssp --S----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE----SS----EEEEEETTT--B
T ss_pred --ccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeecc--ccCCCceEEEEEEECCCCCc
Confidence 012233344443 11 47788888888888664 1 21111122111 1222 444433 210
Q ss_pred -----------------CcEEEEEEecCCCEEEEEECCCCceEEEEecC-CCEEEEEEc------Cc-EEEEEECCCcEE
Q 000744 1214 -----------------GLLFAGGSSVDGTAGKVFSISSKTAVGSFTTG-IDIQHLAVN------SD-FIFTATKCGTIE 1268 (1306)
Q Consensus 1214 -----------------~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~~-~~V~sla~s------pd-~Lasgs~Dg~I~ 1268 (1306)
.+.+++++ +. .||++...+.+..++.... .....+.+- .. .|++-..||.|+
T Consensus 209 a~At~~~~~~l~~g~~i~g~vVvvS--e~-~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~ 285 (395)
T PF08596_consen 209 ALATISAMQGLSKGISIPGYVVVVS--ES-DIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIR 285 (395)
T ss_dssp -B-BHHHHHGGGGT----EEEEEE---SS-EEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEE
T ss_pred ccCchhHhhccccCCCcCcEEEEEc--cc-ceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEE
Confidence 13444444 44 6999999887766655422 123333342 12 888889999999
Q ss_pred EEECCCCeEEEEEecccCCCCCCCeEEEEEcCCCCcc
Q 000744 1269 VWLKERVTRVASVKANNSGGGHAKITCLGTGVDGHPY 1305 (1306)
Q Consensus 1269 IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~~L 1305 (1306)
++.+..-+.+..+.... ......+....|+++|..+
T Consensus 286 i~SLP~Lkei~~~~l~~-~~d~~~~~~ssis~~Gdi~ 321 (395)
T PF08596_consen 286 IYSLPSLKEIKSVSLPP-PLDSRRLSSSSISRNGDIF 321 (395)
T ss_dssp EEETTT--EEEEEE-SS----HHHHTT-EE-TTS-EE
T ss_pred EEECCCchHhhcccCCC-ccccccccccEECCCCCEE
Confidence 99999988888877410 0011345566778888754
No 378
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.35 E-value=0.014 Score=78.00 Aligned_cols=226 Identities=23% Similarity=0.198 Sum_probs=123.5
Q ss_pred chHHHHHHHhcCCcHHHHHHHHHHHHHHhccCccccccccccCCchHHHHHHHhcCh----HHHHHHHhccCCCHHHHhh
Q 000744 535 IINGFAEILSASLSREVLRTSVYILSELMVADESVGDILTSVDSDFDCLAALLKNGL----GEAAVLIYQLRPAFAQLSA 610 (1306)
Q Consensus 535 ~I~~Lv~~L~~~~~~~~~e~Av~~L~~L~s~~~~~~~~I~~~~~~i~~Lv~lLk~g~----~~Aa~aL~~L~~~~~~i~~ 610 (1306)
.++.|++.|... ++.+|+.|+.+|..+. ...+++.|+.+|++.. ..|+.+|..+. ..
T Consensus 622 ~~~~L~~~L~D~-d~~VR~~Av~~L~~~~------------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~------~~ 682 (897)
T PRK13800 622 SVAELAPYLADP-DPGVRRTAVAVLTETT------------PPGFGPALVAALGDGAAAVRRAAAEGLRELV------EV 682 (897)
T ss_pred hHHHHHHHhcCC-CHHHHHHHHHHHhhhc------------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHH------hc
Confidence 488999999877 9999999999999761 2668899999998765 55667774431 11
Q ss_pred CCchHHHHHHhhcCCccccchhcccCchHHHHHHHHHH-----------HccCCCCCchhhhhHhhcCCCHHHHHhhc--
Q 000744 611 HEFIPSLVQLVLNKTEEFDELQFVMEPKDAAIEMLEQI-----------LMGGDKKSRSITALSLISANGIPALIKCL-- 677 (1306)
Q Consensus 611 ~g~i~~Lv~ll~~g~~~~~~~~~~~~~k~aa~~lL~~l-----------~~~~~~~~~~~n~~~i~~~g~i~~Lv~~l-- 677 (1306)
....+.|...|.+.+... +.+|+..|..+ +...|......-..++.+.+..+.|..++
T Consensus 683 ~~~~~~L~~~L~~~d~~V---------R~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D 753 (897)
T PRK13800 683 LPPAPALRDHLGSPDPVV---------RAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATD 753 (897)
T ss_pred cCchHHHHHHhcCCCHHH---------HHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcC
Confidence 234567888887755322 22344444332 11111111222222333333334444444
Q ss_pred CChhHHHHHHHHHHhhhhccchhHHHHHHhcccchhhhhhhcCCchhHhHHHHHHHHHHhcchhhhHHHHHHHhhhcCCc
Q 000744 678 DRVEVRRSIVSILLCCMHADKSCKTLIAKRIELSHVLDLFHDGNDSVRGICINFLSELVLLNRRTFSNQILQVIRDEGSF 757 (1306)
Q Consensus 678 ~~~~~~~~~~~~L~~~~~~~~~~r~~i~~~~~~~~l~~ll~~g~~~~k~~a~~~L~~L~~~~~~~~~~~~l~~i~~~g~~ 757 (1306)
.+.+-|.+++..|...-.. ....++.|+.++.+..+..|..|+..|-.+ |.-
T Consensus 754 ~~~~VR~~aa~aL~~~~~~---------~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~-------------------g~~ 805 (897)
T PRK13800 754 ENREVRIAVAKGLATLGAG---------GAPAGDAVRALTGDPDPLVRAAALAALAEL-------------------GCP 805 (897)
T ss_pred CCHHHHHHHHHHHHHhccc---------cchhHHHHHHHhcCCCHHHHHHHHHHHHhc-------------------CCc
Confidence 3444444444444321000 001134555555555555555555555333 211
Q ss_pred ch-HHHHHHHhhcCCCcchhhHHHHHHhhhcccCCccccccHHHHHHHHHHHHhcCCCchHHHHHHHHHHhc
Q 000744 758 ST-MHTFLVYLQMAPMEQQPATASLLLQLDLLVEPRKMSMYREEAVEALIEALRRKDFPNSQMMALDALLSL 828 (1306)
Q Consensus 758 ~~-m~~ll~~l~~~~~~~~~~~A~~l~~l~~l~~~~~~~~~reeai~~l~~~l~~~~~~~~q~~aa~~l~~l 828 (1306)
.. ...++..|+...+.=+..+|..|..+. .+++++.|+.+|...+ ..+++.|+.+|..+
T Consensus 806 ~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~-----------~~~a~~~L~~~L~D~~-~~VR~~A~~aL~~~ 865 (897)
T PRK13800 806 PDDVAAATAALRASAWQVRQGAARALAGAA-----------ADVAVPALVEALTDPH-LDVRKAAVLALTRW 865 (897)
T ss_pred chhHHHHHHHhcCCChHHHHHHHHHHHhcc-----------ccchHHHHHHHhcCCC-HHHHHHHHHHHhcc
Confidence 11 123445555544333444555554332 3567788888886553 57888899999886
No 379
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.021 Score=70.92 Aligned_cols=192 Identities=14% Similarity=0.109 Sum_probs=127.6
Q ss_pred cccccc---cEEEEEeCCCcEEEEeCCCce-EEcccCCCC-EEEEEEeCC--EEEEEECCCc-----EEEEeCCCC---c
Q 000744 1003 VVTDIQ---KALMNLSSVNATELWHCNEVT-ELDSSTNGE-VLSLIHLKG--RVLSSHSDGT-----IKMWDSGKR---V 1067 (1306)
Q Consensus 1003 ~V~~i~---~~Lasgs~Dg~I~IWd~~~~~-~i~~~H~~~-V~sl~fspd--~LaSgs~Dg~-----I~vWd~~t~---~ 1067 (1306)
.++++. ..++.|+.||.|.+.+-.-.. .-...+... |..+....+ +|++.+.|+. ++|||++.- .
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 445544 789999999999888755322 334445444 555544443 8888887754 899998632 1
Q ss_pred -cceEE--EEccc-----CccEEEEEEcCCCCEEEEEeCCCcEEEEEcC--CCc-eeEEEeecCCCCeEEEEe--CCcEE
Q 000744 1068 -LRLIQ--EVREH-----TRAVTCLYVPSSGDKLYSGSLDKTIRVWSIK--PEE-IHCLQVHNVKEAVHELTA--NAEIA 1134 (1306)
Q Consensus 1068 -~~~i~--~l~~H-----~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~--~~~-~~~i~~~~~~~~V~sl~~--~~~~v 1134 (1306)
++++. .+..| ..++.+++.+.+-+.++.|-.||.|..+.-+ ... .+....+..+++|+++.+ .+..+
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~ 186 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSV 186 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCcee
Confidence 34552 22232 4578999999999999999999999887432 111 233444556799999998 33443
Q ss_pred EEEcCCCeEEEEEecCCE---E-EeccCCCeEEEEEeCCE--EEEEECCCcEEEEECCCCceeEEec
Q 000744 1135 CFVSPATGVKVYNWSGAI---K-HINFNKHVKSLVMTGDK--LYCGCSGYSIQEVDLGNLTSTTFYA 1195 (1306)
Q Consensus 1135 ~~s~dg~~I~i~~~~~~~---~-l~~~~~~V~sl~~s~d~--L~sgs~Dg~I~iwDl~~~~~~~~~~ 1195 (1306)
+|...-..|.+|...|.. + +-.++..++|..+++.. +++++ +..+.+||....+....|.
T Consensus 187 lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 187 LFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred EEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence 555555558888877543 3 33567789999998652 44444 5669999998777766665
No 380
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=9.8e-05 Score=80.72 Aligned_cols=51 Identities=25% Similarity=0.206 Sum_probs=46.4
Q ss_pred ccCcccccccCCcEEcCCCCcccHHHHHHHHHcCCCCCCCCCCccCCCCCC
Q 000744 344 FVCPITGQIFNDPVTLETGQTYERKAIQEWLKRGNTTCPITRQPLCSNSLP 394 (1306)
Q Consensus 344 ~~CpIc~~l~~dPv~~~cGhtfc~~cI~~~~~~~~~~CP~c~~~l~~~~l~ 394 (1306)
-.|+||+.-+.-||.+.|+|-||..||+.....+..+||+||+++.+.-+.
T Consensus 8 ~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~~ 58 (324)
T KOG0824|consen 8 KECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTIDF 58 (324)
T ss_pred CcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcchhc
Confidence 359999999999999999999999999999888888999999998876653
No 381
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.34 E-value=0.00048 Score=53.30 Aligned_cols=34 Identities=26% Similarity=0.392 Sum_probs=30.8
Q ss_pred eEEcccCCCCEEEEEEeCC--EEEEEECCCcEEEEe
Q 000744 1029 TELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWD 1062 (1306)
Q Consensus 1029 ~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd 1062 (1306)
.....+|.+.|++|+|+|+ +|+||+.|++|++||
T Consensus 4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4566799999999999995 999999999999997
No 382
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.023 Score=70.65 Aligned_cols=194 Identities=16% Similarity=0.284 Sum_probs=119.4
Q ss_pred CEEEEEEeCCEEEEEECCCcEEEEeCCCCccceEEEEcccCcc-EEEEEEcCCCCEEEEEeCCCc-----EEEEEcCCCc
Q 000744 1038 EVLSLIHLKGRVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRA-VTCLYVPSSGDKLYSGSLDKT-----IRVWSIKPEE 1111 (1306)
Q Consensus 1038 ~V~sl~fspd~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~-V~sl~fspdg~~L~Sgs~Dgt-----I~VWdi~~~~ 1111 (1306)
.|+|++-+...++.|+.||.|.+.+-.- +.++.++.+... |+.+....+..+|++.+.|+. ++|||++.-+
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~---~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSSF---QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecccc---eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 6777766667999999999998877543 456788888777 555544334478888887754 8999987531
Q ss_pred ----eeEE---Eeec-----CCCCeEEEEe--CCc-EEEEEcCCCeEEEEEec-----CCEEE--eccCCCeEEEEEeCC
Q 000744 1112 ----IHCL---QVHN-----VKEAVHELTA--NAE-IACFVSPATGVKVYNWS-----GAIKH--INFNKHVKSLVMTGD 1169 (1306)
Q Consensus 1112 ----~~~i---~~~~-----~~~~V~sl~~--~~~-~v~~s~dg~~I~i~~~~-----~~~~l--~~~~~~V~sl~~s~d 1169 (1306)
..|+ ..++ ...++.++++ +-. +++.-.+|. |..+.-| |.... .....+|+.+.+..+
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~-V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGL-VICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcE-EEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 3444 2222 2355666664 222 222223332 3322222 11111 234678999999844
Q ss_pred --EEEEEECCCcEEEEECCCCceeEEecCcccccCCc-cEEEEEEeCCcE-EEEEEecCCCEEEEEECCCCceEEEEe
Q 000744 1170 --KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGLL-FAGGSSVDGTAGKVFSISSKTAVGSFT 1243 (1306)
Q Consensus 1170 --~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~-llas~s~Dg~~I~IWD~~t~~~l~~l~ 1243 (1306)
.++-......|.+|.+.+..+.. ..+..|. +++|..+++... +++++ +. .+.+||......-..|.
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~p~~-----~~ld~~G~~lnCss~~~~t~qfIca~--~e-~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRTPSL-----KVLDNNGISLNCSSFSDGTYQFICAG--SE-FLYFYDSDGRGPCFAFE 252 (933)
T ss_pred CceeEEEEecceeEEEEecCCCcce-----eeeccCCccceeeecCCCCccEEEec--Cc-eEEEEcCCCcceeeeec
Confidence 22333345678999988444221 1133444 889999986655 77766 34 69999998777777776
No 383
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.31 E-value=0.1 Score=60.10 Aligned_cols=223 Identities=13% Similarity=0.178 Sum_probs=128.6
Q ss_pred CcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEe----------CCCcEEEEEcCCCceeEEEeecCCCCeE
Q 000744 1056 GTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGS----------LDKTIRVWSIKPEEIHCLQVHNVKEAVH 1125 (1306)
Q Consensus 1056 g~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs----------~DgtI~VWdi~~~~~~~i~~~~~~~~V~ 1125 (1306)
+.+.++|.+++ +.+-.+..- -.-.+..+|+++.+++.+ ..-.|.+||..+-...--..++.+....
T Consensus 17 ~rv~viD~d~~--k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~ 92 (342)
T PF06433_consen 17 SRVYVIDADSG--KLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ 92 (342)
T ss_dssp EEEEEEETTTT--EEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--
T ss_pred ceEEEEECCCC--cEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe
Confidence 47899999888 655555432 223466789999888754 3446899999986432222333221222
Q ss_pred EEEeCCcEEEEEcCCCeEEEEEecCC--EEEecc-----------CCCeEEEEEeCCEEEEEECCCcEEEEECC-CCcee
Q 000744 1126 ELTANAEIACFVSPATGVKVYNWSGA--IKHINF-----------NKHVKSLVMTGDKLYCGCSGYSIQEVDLG-NLTST 1191 (1306)
Q Consensus 1126 sl~~~~~~v~~s~dg~~I~i~~~~~~--~~l~~~-----------~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~-~~~~~ 1191 (1306)
.+. ......++.||+.+.+++.... +.+.+. .+...-.-..++.+.+-|.||++.-..+. .|+..
T Consensus 93 ~~~-~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~ 171 (342)
T PF06433_consen 93 VVP-YKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEA 171 (342)
T ss_dssp BS---GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEE
T ss_pred ecc-cccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEe
Confidence 111 4455678999999999999854 333332 12111111224578899999999988887 35443
Q ss_pred EEe----cCcc--------------cc--cCCc-cEEEEEEeCC-----------------------------------c
Q 000744 1192 TFY----AGTK--------------KL--LGKQ-TIHSLHMHNG-----------------------------------L 1215 (1306)
Q Consensus 1192 ~~~----~~~~--------------~l--~gh~-~I~sl~~s~~-----------------------------------~ 1215 (1306)
..- .... .+ ...+ .|+.+.++.+ .
T Consensus 172 ~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~r 251 (342)
T PF06433_consen 172 QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGR 251 (342)
T ss_dssp EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTE
T ss_pred EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCe
Confidence 221 1000 00 0001 2333332211 1
Q ss_pred EEEEEE-ecC------CCEEEEEECCCCceEEEEecCCCEEEEEEcCc---EEEEEE-CCCcEEEEECCCCeEEEEEec
Q 000744 1216 LFAGGS-SVD------GTAGKVFSISSKTAVGSFTTGIDIQHLAVNSD---FIFTAT-KCGTIEVWLKERVTRVASVKA 1283 (1306)
Q Consensus 1216 ~llas~-s~D------g~~I~IWD~~t~~~l~~l~~~~~V~sla~spd---~Lasgs-~Dg~I~IWd~~tg~~l~~l~~ 1283 (1306)
+|+.-- +.+ +..|-+||+.+++.+..+.-...+.+|.++.+ .|++.+ .++.+.|||..+|+.++++..
T Consensus 252 lyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 252 LYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred EEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 111110 000 12677889999999999986667889999987 666554 589999999999999999974
No 384
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.31 E-value=0.084 Score=60.08 Aligned_cols=207 Identities=16% Similarity=0.095 Sum_probs=123.1
Q ss_pred EEEEEECCC-cEEEEeCCCCccceEEEEcccCccEE--EEEEcCCCCEEEEEeC-----CCcEEEEEcCCCceeEEEeec
Q 000744 1048 RVLSSHSDG-TIKMWDSGKRVLRLIQEVREHTRAVT--CLYVPSSGDKLYSGSL-----DKTIRVWSIKPEEIHCLQVHN 1119 (1306)
Q Consensus 1048 ~LaSgs~Dg-~I~vWd~~t~~~~~i~~l~~H~~~V~--sl~fspdg~~L~Sgs~-----DgtI~VWdi~~~~~~~i~~~~ 1119 (1306)
.++.+-.-| ...+||..++ +....+....+.-. .-.||+||++|++.-. .|.|-|||...+ +..+..+.
T Consensus 19 avafaRRPG~~~~v~D~~~g--~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~-~~ri~E~~ 95 (305)
T PF07433_consen 19 AVAFARRPGTFALVFDCRTG--QLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG-YRRIGEFP 95 (305)
T ss_pred EEEEEeCCCcEEEEEEcCCC--ceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC-cEEEeEec
Confidence 344444433 3556788777 44444332211111 2469999999998754 488999999933 34444443
Q ss_pred -CCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCC----EEEEEECCCcEEEEECCCCceeEEe
Q 000744 1120 -VKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGD----KLYCGCSGYSIQEVDLGNLTSTTFY 1194 (1306)
Q Consensus 1120 -~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d----~L~sgs~Dg~I~iwDl~~~~~~~~~ 1194 (1306)
+.- .++-+.+.+||..+.|.+- .+. -+|+ +|=..+.+.++.+.|..+|+.+...
T Consensus 96 s~GI-------GPHel~l~pDG~tLvVANG--GI~------------Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~ 154 (305)
T PF07433_consen 96 SHGI-------GPHELLLMPDGETLVVANG--GIE------------THPDSGRAKLNLDTMQPSLVYLDARSGALLEQV 154 (305)
T ss_pred CCCc-------ChhhEEEcCCCCEEEEEcC--CCc------------cCcccCceecChhhcCCceEEEecCCCceeeee
Confidence 111 2334447888866655431 111 1111 2444556677778888888877653
Q ss_pred cCcccccCCc-cEEEEEEeCCcEEEEEEecCCC------EEEEEECCCCceEEEEec--------CCCEEEEEEcCc--E
Q 000744 1195 AGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGT------AGKVFSISSKTAVGSFTT--------GIDIQHLAVNSD--F 1257 (1306)
Q Consensus 1195 ~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~------~I~IWD~~t~~~l~~l~~--------~~~V~sla~spd--~ 1257 (1306)
.-.. .-|. .|+-+++.+++.++.+.-..+- -+-+|+. ++.+..+.. ...|-+|+++++ .
T Consensus 155 ~Lp~--~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ 230 (305)
T PF07433_consen 155 ELPP--DLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRL 230 (305)
T ss_pred ecCc--cccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCE
Confidence 3111 2355 8999999988888877644431 2333332 222222221 345899999987 4
Q ss_pred E-EEEECCCcEEEEECCCCeEEEEEe
Q 000744 1258 I-FTATKCGTIEVWLKERVTRVASVK 1282 (1306)
Q Consensus 1258 L-asgs~Dg~I~IWd~~tg~~l~~l~ 1282 (1306)
+ +|+=.-|.+.+||..++..+....
T Consensus 231 ia~tsPrGg~~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 231 IAVTSPRGGRVAVWDAATGRLLGSVP 256 (305)
T ss_pred EEEECCCCCEEEEEECCCCCEeeccc
Confidence 4 555567899999999998887665
No 385
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=97.24 E-value=0.002 Score=82.79 Aligned_cols=229 Identities=14% Similarity=0.127 Sum_probs=164.3
Q ss_pred HHHHHHHHHhhhcCCCcccccccccccchHHHHHHHhcCC-----------cHHHHHHHHHHHHHHhccCcccccccccc
Q 000744 508 TAVLAIARLWKESKGDPGVHAYLLKPTIINGFAEILSASL-----------SREVLRTSVYILSELMVADESVGDILTSV 576 (1306)
Q Consensus 508 ~Av~~i~~L~~~~~~~~~~~~~i~~~~~I~~Lv~~L~~~~-----------~~~~~e~Av~~L~~L~s~~~~~~~~I~~~ 576 (1306)
.|+..|..++.+.+ -|-.+.+-|++..+-++|.-.. ....+..|.-+|.||...|.+||..+-..
T Consensus 317 aA~~~lMK~SFDEE----hR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~ 392 (2195)
T KOG2122|consen 317 AALCTLMKLSFDEE----HRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQ 392 (2195)
T ss_pred HHHHHHHHhhccHH----HHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhh
Confidence 56777777877663 3457777788777777665411 24578899999999999999999999999
Q ss_pred CCchHHHHHHHhcCh----HHHHHHHhccCC-----CHHHHhhCCchHHHHHHhhcCCccccchhcccCchHHHHHHHHH
Q 000744 577 DSDFDCLAALLKNGL----GEAAVLIYQLRP-----AFAQLSAHEFIPSLVQLVLNKTEEFDELQFVMEPKDAAIEMLEQ 647 (1306)
Q Consensus 577 ~~~i~~Lv~lLk~g~----~~Aa~aL~~L~~-----~~~~i~~~g~i~~Lv~ll~~g~~~~~~~~~~~~~k~aa~~lL~~ 647 (1306)
.|-+++||.-|.+.. .--|..|-||+= .|+.+-+.|-|-+|+.....-....+ -.++|..
T Consensus 393 rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsT-----------LKavLSA 461 (2195)
T KOG2122|consen 393 RGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKEST-----------LKAVLSA 461 (2195)
T ss_pred hhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccch-----------HHHHHHH
Confidence 999999999999865 335677889964 56666779999999988544331111 2234444
Q ss_pred HHccCCCCC-chhhhhHhhc-CCCHHHHHhhc--C----ChhHHHHHHHHHHh---hhhccchhHHHHHHhcccchhhhh
Q 000744 648 ILMGGDKKS-RSITALSLIS-ANGIPALIKCL--D----RVEVRRSIVSILLC---CMHADKSCKTLIAKRIELSHVLDL 716 (1306)
Q Consensus 648 l~~~~~~~~-~~~n~~~i~~-~g~i~~Lv~~l--~----~~~~~~~~~~~L~~---~~~~~~~~r~~i~~~~~~~~l~~l 716 (1306)
| .|++- ..+|++.|-. .|++.+||.+| + +..=-+++-+||-+ .++....+|..+-+...+..||+.
T Consensus 462 L---WNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~ 538 (2195)
T KOG2122|consen 462 L---WNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQH 538 (2195)
T ss_pred H---hhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHH
Confidence 4 33333 3699999976 57789999999 2 22222444556643 556667788888999999999999
Q ss_pred hhcCCchhHhHHHHHHHHHHhcchhhhHHHHHHHhhhcCCcch
Q 000744 717 FHDGNDSVRGICINFLSELVLLNRRTFSNQILQVIRDEGSFST 759 (1306)
Q Consensus 717 l~~g~~~~k~~a~~~L~~L~~~~~~~~~~~~l~~i~~~g~~~~ 759 (1306)
|.+.+--.=.||...|.+|.-. .... -+-|-+.|+++.
T Consensus 539 LKS~SLTiVSNaCGTLWNLSAR--~p~D---Qq~LwD~gAv~m 576 (2195)
T KOG2122|consen 539 LKSHSLTIVSNACGTLWNLSAR--SPED---QQMLWDDGAVPM 576 (2195)
T ss_pred hhhcceEEeecchhhhhhhhcC--CHHH---HHHHHhcccHHH
Confidence 9998888888899999988522 2222 245567788777
No 386
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.18 E-value=0.00018 Score=73.35 Aligned_cols=50 Identities=16% Similarity=0.364 Sum_probs=42.6
Q ss_pred cccCcccccccCCcEEcCCCCcccHHHHHHHHHcCCCCCCCCCCccCCCCC
Q 000744 343 DFVCPITGQIFNDPVTLETGQTYERKAIQEWLKRGNTTCPITRQPLCSNSL 393 (1306)
Q Consensus 343 ~~~CpIc~~l~~dPv~~~cGhtfc~~cI~~~~~~~~~~CP~c~~~l~~~~l 393 (1306)
.|.|-||.+-++.||++.|||.||..|..+-.+. ...|-+|++.....-.
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk~t~G~f~ 245 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQK-GDECGVCGKATYGRFW 245 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhcc-CCcceecchhhcccee
Confidence 3999999999999999999999999998887776 4569999987654443
No 387
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.0002 Score=78.23 Aligned_cols=48 Identities=19% Similarity=0.326 Sum_probs=41.9
Q ss_pred ccCcccccccCCcEEcCCCCcccHHHHHHHHHcCCCCCCCCCCccCCCC
Q 000744 344 FVCPITGQIFNDPVTLETGQTYERKAIQEWLKRGNTTCPITRQPLCSNS 392 (1306)
Q Consensus 344 ~~CpIc~~l~~dPv~~~cGhtfc~~cI~~~~~~~~~~CP~c~~~l~~~~ 392 (1306)
|.|-||.+.|.+||++.|||+||..|-...++. ...|++|.+.....-
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t~g~~ 289 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK-GEKCYVCSQQTHGSF 289 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhcccccc-CCcceeccccccccc
Confidence 789999999999999999999999998888776 456999998865433
No 388
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.14 E-value=0.12 Score=59.00 Aligned_cols=243 Identities=13% Similarity=0.122 Sum_probs=120.9
Q ss_pred cccccccccc-cEEEEEeCCCc-EEEEeCCCceEE--cccCCCCE-E-EEEEeCC--EEEEEE-----CCCcEEEEeCCC
Q 000744 999 KYSAVVTDIQ-KALMNLSSVNA-TELWHCNEVTEL--DSSTNGEV-L-SLIHLKG--RVLSSH-----SDGTIKMWDSGK 1065 (1306)
Q Consensus 999 ghs~~V~~i~-~~Lasgs~Dg~-I~IWd~~~~~~i--~~~H~~~V-~-sl~fspd--~LaSgs-----~Dg~I~vWd~~t 1065 (1306)
+|.-.+..-. ..++.+-.-|+ ..+||..+.... .....+.- + .-.||+| +|++.- ..|.|-|||...
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 4544444422 55666666665 456887653222 11111111 1 2468875 777763 358999999983
Q ss_pred CccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEe-CCcEEEE-EcCCCeE
Q 000744 1066 RVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTA-NAEIACF-VSPATGV 1143 (1306)
Q Consensus 1066 ~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~-~~~~v~~-s~dg~~I 1143 (1306)
+ .+.+.++..|.-.-..+.+.|||+.|+.+-. -|.- ...++. ..+ .+.. .+.++.. ..+|..+
T Consensus 87 ~-~~ri~E~~s~GIGPHel~l~pDG~tLvVANG--GI~T-hpd~GR-~kL----------Nl~tM~psL~~ld~~sG~ll 151 (305)
T PF07433_consen 87 G-YRRIGEFPSHGIGPHELLLMPDGETLVVANG--GIET-HPDSGR-AKL----------NLDTMQPSLVYLDARSGALL 151 (305)
T ss_pred C-cEEEeEecCCCcChhhEEEcCCCCEEEEEcC--CCcc-CcccCc-eec----------ChhhcCCceEEEecCCCcee
Confidence 2 3778888887766778889999988777632 1210 000000 000 0000 1112222 2333322
Q ss_pred EEEEecCCEEEeccCCCeEEEEEeCC-EEEEEECC-C-------cEEEEECCCCceeEEecCcc-cccCCc-cEEEEEEe
Q 000744 1144 KVYNWSGAIKHINFNKHVKSLVMTGD-KLYCGCSG-Y-------SIQEVDLGNLTSTTFYAGTK-KLLGKQ-TIHSLHMH 1212 (1306)
Q Consensus 1144 ~i~~~~~~~~l~~~~~~V~sl~~s~d-~L~sgs~D-g-------~I~iwDl~~~~~~~~~~~~~-~l~gh~-~I~sl~~s 1212 (1306)
--|.... -.|.-.|..+++.++ .++.|... | -+-+++ .+.....+.... ....-. .|-+|+++
T Consensus 152 ~q~~Lp~----~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~ 225 (305)
T PF07433_consen 152 EQVELPP----DLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAAD 225 (305)
T ss_pred eeeecCc----cccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEe
Confidence 2222110 012333444444433 22222211 0 111221 112122111111 011122 89999999
Q ss_pred CCcEEEEEEecCCCEEEEEECCCCceEEEEecCCCEEEEEEcCc-EEEEEEC
Q 000744 1213 NGLLFAGGSSVDGTAGKVFSISSKTAVGSFTTGIDIQHLAVNSD-FIFTATK 1263 (1306)
Q Consensus 1213 ~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~~~~V~sla~spd-~Lasgs~ 1263 (1306)
+++.+++.+|--++.+.+||..++..+....- .++..++..++ +++|.+.
T Consensus 226 ~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l-~D~cGva~~~~~f~~ssG~ 276 (305)
T PF07433_consen 226 RDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL-PDACGVAPTDDGFLVSSGQ 276 (305)
T ss_pred CCCCEEEEECCCCCEEEEEECCCCCEeecccc-CceeeeeecCCceEEeCCC
Confidence 77655544556666999999999998876642 24667777666 5665543
No 389
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.11 E-value=0.01 Score=71.51 Aligned_cols=75 Identities=12% Similarity=0.203 Sum_probs=63.7
Q ss_pred ccCCCCEEEEEEeCC--EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 000744 1033 SSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPE 1110 (1306)
Q Consensus 1033 ~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~ 1110 (1306)
....+.|.|++++|+ .++.|+.||+|.+||...+ +..+..+.-..+.++|+|+|..+++|+.-|.+.+||+.-.
T Consensus 256 ipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~----~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 256 IPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRG----VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EecCCcceEEecCcccceEEEEecCCeEEEEEcCCC----eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 466889999999985 9999999999999999876 2233345566889999999999999999999999999865
Q ss_pred c
Q 000744 1111 E 1111 (1306)
Q Consensus 1111 ~ 1111 (1306)
.
T Consensus 332 p 332 (545)
T PF11768_consen 332 P 332 (545)
T ss_pred c
Confidence 3
No 390
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.04 E-value=0.00032 Score=85.59 Aligned_cols=180 Identities=11% Similarity=0.119 Sum_probs=114.7
Q ss_pred ceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc-eeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEE
Q 000744 1069 RLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEE-IHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYN 1147 (1306)
Q Consensus 1069 ~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~-~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~ 1147 (1306)
+.+.+|..|+...+|++|+-+.+.|+.|+..|.|+++++.+|. ...+. .|...|+.+. -+.||.
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~n--cH~SavT~ve-------Ps~dgs------ 1156 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVN--CHQSAVTLVE-------PSVDGS------ 1156 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccccc--cccccccccc-------ccCCcc------
Confidence 5667888999999999999999999999999999999999984 11111 1335555554 333443
Q ss_pred ecCCEEEeccCCCeEEEEEeCCEEEE-EECCC-cEEEEECCC-CceeEEecCcccccCCccEEEEEEeCCcEEEEEEecC
Q 000744 1148 WSGAIKHINFNKHVKSLVMTGDKLYC-GCSGY-SIQEVDLGN-LTSTTFYAGTKKLLGKQTIHSLHMHNGLLFAGGSSVD 1224 (1306)
Q Consensus 1148 ~~~~~~l~~~~~~V~sl~~s~d~L~s-gs~Dg-~I~iwDl~~-~~~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~s~D 1224 (1306)
.+++ ++... -..+|++.+ +.....|. .-.++.|++...+-+.|...
T Consensus 1157 ----------------------~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~---------ed~~vkFsn~~q~r~~gt~~ 1205 (1516)
T KOG1832|consen 1157 ----------------------TQLTSSSSSSPLSALWDASSTGGPRHSFD---------EDKAVKFSNSLQFRALGTEA 1205 (1516)
T ss_pred ----------------------eeeeeccccCchHHHhccccccCcccccc---------ccceeehhhhHHHHHhcccc
Confidence 3333 33333 467899875 44544444 34578887544333322222
Q ss_pred CCEEEEEECCCCceEEEEe-c----CCCEEEEEEcCc-EEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEE
Q 000744 1225 GTAGKVFSISSKTAVGSFT-T----GIDIQHLAVNSD-FIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGT 1298 (1306)
Q Consensus 1225 g~~I~IWD~~t~~~l~~l~-~----~~~V~sla~spd-~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slaf 1298 (1306)
+ ...+||+.|+..+.++- + ...-+...|+|+ .|+. .|| -+||++..+.++.|.. -... -.-.|
T Consensus 1206 d-~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl--ndG--vLWDvR~~~aIh~FD~-----ft~~-~~G~F 1274 (1516)
T KOG1832|consen 1206 D-DALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL--NDG--VLWDVRIPEAIHRFDQ-----FTDY-GGGGF 1274 (1516)
T ss_pred c-ceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe--eCc--eeeeeccHHHHhhhhh-----heec-ccccc
Confidence 3 58999999998777743 2 122467889997 4443 355 4799998777776652 1111 12247
Q ss_pred cCCCCcc
Q 000744 1299 GVDGHPY 1305 (1306)
Q Consensus 1299 Spdg~~L 1305 (1306)
+|.|..+
T Consensus 1275 HP~g~eV 1281 (1516)
T KOG1832|consen 1275 HPSGNEV 1281 (1516)
T ss_pred cCCCceE
Confidence 7777654
No 391
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.01 E-value=0.063 Score=69.26 Aligned_cols=229 Identities=15% Similarity=0.127 Sum_probs=124.8
Q ss_pred CCCEEEEEEeC--CEEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc--
Q 000744 1036 NGEVLSLIHLK--GRVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEE-- 1111 (1306)
Q Consensus 1036 ~~~V~sl~fsp--d~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~-- 1111 (1306)
.+.|.++.|.. +.++.+..+|.|.+-|..+...+++. .-.+.|.+++||||++.++-.+.++++.+-+-.=..
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg---~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~ 144 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVG---NVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIA 144 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeee---eccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchh
Confidence 36899999986 48888999999999999887433333 345689999999999999999988887654321100
Q ss_pred eeEEEe-ecCCCCeEEEEeCCcEEEEE-cCCCeEEEEEecCCEEEe---ccCCCeEEEEEeCC--EEEEE----ECC-Cc
Q 000744 1112 IHCLQV-HNVKEAVHELTANAEIACFV-SPATGVKVYNWSGAIKHI---NFNKHVKSLVMTGD--KLYCG----CSG-YS 1179 (1306)
Q Consensus 1112 ~~~i~~-~~~~~~V~sl~~~~~~v~~s-~dg~~I~i~~~~~~~~l~---~~~~~V~sl~~s~d--~L~sg----s~D-g~ 1179 (1306)
.+.+.. ....+....+-|...--.|. ..|+ .+........+.. ...+.-++|+|-+| ++++. -.+ ..
T Consensus 145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr-~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGRKETQFRGSEGR-QAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred ccccccccccccccceecccccceeeecchhh-hcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence 011100 01112223333211111111 1111 0000000000000 12233356777755 44442 234 78
Q ss_pred EEEEECCCCceeEEecCcccccCCccEEEEEEeCCcEEEEEEe---cCCCEEEEEECCCCceEEEE----ec-CCCEEEE
Q 000744 1180 IQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLLFAGGSS---VDGTAGKVFSISSKTAVGSF----TT-GIDIQHL 1251 (1306)
Q Consensus 1180 I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~s---~Dg~~I~IWD~~t~~~l~~l----~~-~~~V~sl 1251 (1306)
|++||-. |....+-... .+ .-.+++|-|.|.++++-. .|+ .|.+|.- +|-.-..| +- ...|..+
T Consensus 224 irV~drE-g~Lns~se~~---~~--l~~~LsWkPsgs~iA~iq~~~sd~-~IvffEr-NGL~hg~f~l~~p~de~~ve~L 295 (1265)
T KOG1920|consen 224 IRVYDRE-GALNSTSEPV---EG--LQHSLSWKPSGSLIAAIQCKTSDS-DIVFFER-NGLRHGEFVLPFPLDEKEVEEL 295 (1265)
T ss_pred EEEeccc-chhhcccCcc---cc--cccceeecCCCCeEeeeeecCCCC-cEEEEec-CCccccccccCCcccccchhee
Confidence 9999987 4433221110 01 235688888776666542 234 6888874 33332322 22 3349999
Q ss_pred EEcCc--EEEE---EECCCcEEEEECCCCe
Q 000744 1252 AVNSD--FIFT---ATKCGTIEVWLKERVT 1276 (1306)
Q Consensus 1252 a~spd--~Las---gs~Dg~I~IWd~~tg~ 1276 (1306)
+|+.+ .|+. ......|++|-+.+..
T Consensus 296 ~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 296 AWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred eecCCCCceeeeecccccceEEEEEecCeE
Confidence 99887 5554 4444559999887654
No 392
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.013 Score=66.86 Aligned_cols=214 Identities=11% Similarity=0.065 Sum_probs=117.2
Q ss_pred cEEEEEeCCCcEEEEeCCCc--eEEcccCCCCEEEEEEeCC---EEEEEECCCcEEEEeCCCCccceEEEEcc--cCccE
Q 000744 1009 KALMNLSSVNATELWHCNEV--TELDSSTNGEVLSLIHLKG---RVLSSHSDGTIKMWDSGKRVLRLIQEVRE--HTRAV 1081 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~--~~i~~~H~~~V~sl~fspd---~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~--H~~~V 1081 (1306)
.++..++-+++|+|.|+++. ......| ..+++++|.-| +|+.|..+|.|.|||+.... ..+..+.+ ...+|
T Consensus 207 GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~-~~~~e~~a~~t~~pv 284 (463)
T KOG1645|consen 207 GLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE-GPLMELVANVTINPV 284 (463)
T ss_pred ceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCC-chHhhhhhhhccCcc
Confidence 47889999999999999863 3334455 88999999864 99999999999999997542 22333322 23345
Q ss_pred EEEEEc------CCCCEEEEEeCCCcEEEEEcCCCc--eeEEEeecCCCCeEEEEe----CCcEEEEEcCCC-----eEE
Q 000744 1082 TCLYVP------SSGDKLYSGSLDKTIRVWSIKPEE--IHCLQVHNVKEAVHELTA----NAEIACFVSPAT-----GVK 1144 (1306)
Q Consensus 1082 ~sl~fs------pdg~~L~Sgs~DgtI~VWdi~~~~--~~~i~~~~~~~~V~sl~~----~~~~v~~s~dg~-----~I~ 1144 (1306)
..++.- +.|.+++..+.+ ...|++.... ..++......+...++.+ +.-++.+-|+-+ .+.
T Consensus 285 ~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il 362 (463)
T KOG1645|consen 285 HKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFIL 362 (463)
T ss_pred eeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccceEEEEecCCCCCccceeee
Confidence 544432 234444444433 4567765432 333333333455555554 112233333211 111
Q ss_pred EEEec--CCEEEec----c-CCCeEEE-----EE-eC--CE-EEEEECCCcEEEEECCCCceeEEecCcccccCCccEEE
Q 000744 1145 VYNWS--GAIKHIN----F-NKHVKSL-----VM-TG--DK-LYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQTIHS 1208 (1306)
Q Consensus 1145 i~~~~--~~~~l~~----~-~~~V~sl-----~~-s~--d~-L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~I~s 1208 (1306)
. ..+ ....++. + .++-+-+ -+ .+ ++ +.+|...+.+.+||..++..++++.-. .+|..
T Consensus 363 ~-~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~~~------epv~D 435 (463)
T KOG1645|consen 363 G-RIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTLALS------EPVLD 435 (463)
T ss_pred e-eeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhheeeecccC------cceee
Confidence 1 111 1111111 1 1110000 01 11 23 445556688999999999999876532 27777
Q ss_pred EEEe--CCcEEEEEEecCCCEEEEEECCC
Q 000744 1209 LHMH--NGLLFAGGSSVDGTAGKVFSISS 1235 (1306)
Q Consensus 1209 l~~s--~~~~llas~s~Dg~~I~IWD~~t 1235 (1306)
++.. +++-|++.- .|+ .++||..++
T Consensus 436 icp~~~n~~syLa~L-Td~-~v~Iyk~es 462 (463)
T KOG1645|consen 436 ICPNDTNGSSYLALL-TDD-RVHIYKNES 462 (463)
T ss_pred cceeecCCcchhhhe-ecc-eEEEEecCC
Confidence 7764 444455444 266 688887543
No 393
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.94 E-value=0.00054 Score=81.72 Aligned_cols=225 Identities=12% Similarity=0.102 Sum_probs=134.3
Q ss_pred cEEEEEeCCCcEEEEeCCC----ceEEcccCCCCEEEEEEeC---CEEEEEE----CCCcEEEEeCCCC--ccceEEEEc
Q 000744 1009 KALMNLSSVNATELWHCNE----VTELDSSTNGEVLSLIHLK---GRVLSSH----SDGTIKMWDSGKR--VLRLIQEVR 1075 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~----~~~i~~~H~~~V~sl~fsp---d~LaSgs----~Dg~I~vWd~~t~--~~~~i~~l~ 1075 (1306)
.+++.|..+|.|-+-..+. ...+..+|...+++++|++ +.|+.|- .|..+.|||+.++ .+.....+.
T Consensus 71 cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs 150 (783)
T KOG1008|consen 71 CILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFS 150 (783)
T ss_pred hhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccc
Confidence 5688999999999988763 3556678899999999998 3777773 4678999999876 112122222
Q ss_pred c-cCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEE
Q 000744 1076 E-HTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKH 1154 (1306)
Q Consensus 1076 ~-H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l 1154 (1306)
+ ......+++|-.+.+.+.+|...+.+.++|++.....+.. +. +..+..+. +.|
T Consensus 151 ~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~s-vn-Tk~vqG~t-------Vdp---------------- 205 (783)
T KOG1008|consen 151 SSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSS-VN-TKYVQGIT-------VDP---------------- 205 (783)
T ss_pred cccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhh-hh-hhhcccce-------ecC----------------
Confidence 2 3345668899889999999999999999999853111100 00 01122221 111
Q ss_pred eccCCCeEEEEEeCCEEEEEECCCcEEEEE-CCCCc-eeEEecCcccccCCc-cEEEEEEeC--CcEEEEEEecCCCEEE
Q 000744 1155 INFNKHVKSLVMTGDKLYCGCSGYSIQEVD-LGNLT-STTFYAGTKKLLGKQ-TIHSLHMHN--GLLFAGGSSVDGTAGK 1229 (1306)
Q Consensus 1155 ~~~~~~V~sl~~s~d~L~sgs~Dg~I~iwD-l~~~~-~~~~~~~~~~l~gh~-~I~sl~~s~--~~~llas~s~Dg~~I~ 1229 (1306)
|+++++++. .||.|-+|| .++-+ ++.+...... ... .+..++|.| .+.++ +.+.|.++|+
T Consensus 206 -----------~~~nY~cs~-~dg~iAiwD~~rnienpl~~i~~~~N--~~~~~l~~~aycPtrtglla-~l~RdS~tIr 270 (783)
T KOG1008|consen 206 -----------FSPNYFCSN-SDGDIAIWDTYRNIENPLQIILRNEN--KKPKQLFALAYCPTRTGLLA-VLSRDSITIR 270 (783)
T ss_pred -----------CCCCceecc-ccCceeeccchhhhccHHHHHhhCCC--CcccceeeEEeccCCcchhh-hhccCcceEE
Confidence 234565554 499999999 44322 2221110000 001 478888874 33433 3346777999
Q ss_pred EEECCCC------c-----eEEE---EecC---CCEEEEEEcCc----EEEEEECCCcEEEEECC
Q 000744 1230 VFSISSK------T-----AVGS---FTTG---IDIQHLAVNSD----FIFTATKCGTIEVWLKE 1273 (1306)
Q Consensus 1230 IWD~~t~------~-----~l~~---l~~~---~~V~sla~spd----~Lasgs~Dg~I~IWd~~ 1273 (1306)
.+|+..- . .... +++. +.|.+..||+. ...++-..-++.-+++.
T Consensus 271 lydi~~v~t~~s~nn~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V~ 335 (783)
T KOG1008|consen 271 LYDICVVGTEGSANNSVFVNYESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSVH 335 (783)
T ss_pred EecccccCCcccccccceeeecccccccccccccceeecCcCcCCccceeEEeeccCChhhccch
Confidence 9998531 0 0111 2333 34777777764 55555555555555443
No 394
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.0012 Score=73.17 Aligned_cols=49 Identities=27% Similarity=0.520 Sum_probs=42.0
Q ss_pred CCcccCcccccccCCcEEcC-CCCcccHHHHHHHHHcCCCCCCCCCCccCC
Q 000744 341 PKDFVCPITGQIFNDPVTLE-TGQTYERKAIQEWLKRGNTTCPITRQPLCS 390 (1306)
Q Consensus 341 ~~~~~CpIc~~l~~dPv~~~-cGhtfc~~cI~~~~~~~~~~CP~c~~~l~~ 390 (1306)
|+.-.||+|..--.+|.++. .|..||..||-.++.+ +..||+|+.+..-
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~-~~~CPVT~~p~~v 347 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN-YGHCPVTGYPASV 347 (357)
T ss_pred CccccChhHHhccCCCceEEecceEEeHHHHHHHHHh-cCCCCccCCcchH
Confidence 45567999999999998776 6999999999999995 7889999987543
No 395
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.84 E-value=0.00028 Score=84.00 Aligned_cols=194 Identities=13% Similarity=0.132 Sum_probs=122.4
Q ss_pred CCEEEEEEeC--C--EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcC-CCCEEEEEe----CCCcEEEEEc
Q 000744 1037 GEVLSLIHLK--G--RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPS-SGDKLYSGS----LDKTIRVWSI 1107 (1306)
Q Consensus 1037 ~~V~sl~fsp--d--~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fsp-dg~~L~Sgs----~DgtI~VWdi 1107 (1306)
..+.|++++- + .++.|..+|.|-+-.+...-........+|....++++|++ |.+.|+.|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 3456666542 2 78999999999999886542122345567888999999999 666777763 3567999999
Q ss_pred CCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCC--EEEEEECCCcEEEEEC
Q 000744 1108 KPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGD--KLYCGCSGYSIQEVDL 1185 (1306)
Q Consensus 1108 ~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d--~L~sgs~Dg~I~iwDl 1185 (1306)
.++-. .+-.+.. ++. + ......+++|..+ .+.+|.....++++|+
T Consensus 137 ~s~lt---------vPke~~~-------fs~-~----------------~l~gqns~cwlrd~klvlaGm~sr~~~ifdl 183 (783)
T KOG1008|consen 137 NSLLT---------VPKESPL-------FSS-S----------------TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDL 183 (783)
T ss_pred ccccC---------CCccccc-------ccc-c----------------cccCccccccccCcchhhcccccchhhhhhh
Confidence 88611 1111111 111 0 0112224555433 4788888889999999
Q ss_pred CCCce-eEEecCcccccCCc-cEEEEEEeC-CcEEEEEEecCCCEEEEEEC-CC-CceEEEEecCC-----CEEEEEEcC
Q 000744 1186 GNLTS-TTFYAGTKKLLGKQ-TIHSLHMHN-GLLFAGGSSVDGTAGKVFSI-SS-KTAVGSFTTGI-----DIQHLAVNS 1255 (1306)
Q Consensus 1186 ~~~~~-~~~~~~~~~l~gh~-~I~sl~~s~-~~~llas~s~Dg~~I~IWD~-~t-~~~l~~l~~~~-----~V~sla~sp 1255 (1306)
+.... ...+ .+ .+..+.++| ...++++.. || .|-+||. .+ ..++.++.+.. .+..++|+|
T Consensus 184 Rqs~~~~~sv--------nTk~vqG~tVdp~~~nY~cs~~-dg-~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycP 253 (783)
T KOG1008|consen 184 RQSLDSVSSV--------NTKYVQGITVDPFSPNYFCSNS-DG-DIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCP 253 (783)
T ss_pred hhhhhhhhhh--------hhhhcccceecCCCCCceeccc-cC-ceeeccchhhhccHHHHHhhCCCCcccceeeEEecc
Confidence 84321 1111 11 566677776 566666664 77 8999994 22 23333443322 389999999
Q ss_pred c---EEEEEECC-CcEEEEECC
Q 000744 1256 D---FIFTATKC-GTIEVWLKE 1273 (1306)
Q Consensus 1256 d---~Lasgs~D-g~I~IWd~~ 1273 (1306)
. .+++.+.| ++|+.+++.
T Consensus 254 trtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 254 TRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred CCcchhhhhccCcceEEEeccc
Confidence 7 67776655 789999875
No 396
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.78 E-value=0.38 Score=56.42 Aligned_cols=205 Identities=15% Similarity=0.153 Sum_probs=123.9
Q ss_pred CcEEEEeCCCCccceEEEEccc-CccEEE---EEEcCC----CCEEEEEeC----------CCcEEEEEcCCC-----ce
Q 000744 1056 GTIKMWDSGKRVLRLIQEVREH-TRAVTC---LYVPSS----GDKLYSGSL----------DKTIRVWSIKPE-----EI 1112 (1306)
Q Consensus 1056 g~I~vWd~~t~~~~~i~~l~~H-~~~V~s---l~fspd----g~~L~Sgs~----------DgtI~VWdi~~~-----~~ 1112 (1306)
+.|++.|..+. +.+.++.-. ...+++ +.|..+ ..+++.|+. .|.|.++++... +.
T Consensus 2 s~i~l~d~~~~--~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l 79 (321)
T PF03178_consen 2 SSIRLVDPTTF--EVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKL 79 (321)
T ss_dssp -EEEEEETTTS--SEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EE
T ss_pred cEEEEEeCCCC--eEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEE
Confidence 35778887776 455544321 223443 344332 457777753 288999999984 45
Q ss_pred eEEEeecCCCCeEEEEe-CCcEEEEEcCCCeEEEEEecCCE--E---EeccCCCeEEEEEeCCEEEEEECCCcEEEEECC
Q 000744 1113 HCLQVHNVKEAVHELTA-NAEIACFVSPATGVKVYNWSGAI--K---HINFNKHVKSLVMTGDKLYCGCSGYSIQEVDLG 1186 (1306)
Q Consensus 1113 ~~i~~~~~~~~V~sl~~-~~~~v~~s~dg~~I~i~~~~~~~--~---l~~~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~ 1186 (1306)
+.+.....+++|++++. ++. +.++. |..+.++.++... . .+.....+.++...++++++|.....+.++..+
T Consensus 80 ~~i~~~~~~g~V~ai~~~~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~ 157 (321)
T PF03178_consen 80 KLIHSTEVKGPVTAICSFNGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYD 157 (321)
T ss_dssp EEEEEEEESS-EEEEEEETTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEE
T ss_pred EEEEEEeecCcceEhhhhCCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEE
Confidence 66666667799999987 444 33333 5669999998543 1 234566899999999999999998888887544
Q ss_pred C-CceeEEecCcccccCCc-cEEEEEEe-CCcEEEEEEecCCCEEEEEECCC-------Cc----eEEEEecCCCEEEE-
Q 000744 1187 N-LTSTTFYAGTKKLLGKQ-TIHSLHMH-NGLLFAGGSSVDGTAGKVFSISS-------KT----AVGSFTTGIDIQHL- 1251 (1306)
Q Consensus 1187 ~-~~~~~~~~~~~~l~gh~-~I~sl~~s-~~~~llas~s~Dg~~I~IWD~~t-------~~----~l~~l~~~~~V~sl- 1251 (1306)
. +..+..+.. .... +++++.+- ++. .++++..+| .+.++.... +. ....+..+..|+++
T Consensus 158 ~~~~~l~~va~----d~~~~~v~~~~~l~d~~-~~i~~D~~g-nl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~ 231 (321)
T PF03178_consen 158 EENNKLILVAR----DYQPRWVTAAEFLVDED-TIIVGDKDG-NLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFR 231 (321)
T ss_dssp TTTE-EEEEEE----ESS-BEEEEEEEE-SSS-EEEEEETTS-EEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEE
T ss_pred ccCCEEEEEEe----cCCCccEEEEEEecCCc-EEEEEcCCC-eEEEEEECCCCcccccccccceeEEEEECCCccceEE
Confidence 3 222222211 0112 78888887 544 555666677 799887752 22 23444456678888
Q ss_pred --EEcC---c-------EEEEEECCCcEEEE
Q 000744 1252 --AVNS---D-------FIFTATKCGTIEVW 1270 (1306)
Q Consensus 1252 --a~sp---d-------~Lasgs~Dg~I~IW 1270 (1306)
.+.| + .++.++.+|.|.+.
T Consensus 232 ~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 232 RGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp E--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 4444 1 48888899988743
No 397
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.77 E-value=0.0066 Score=75.36 Aligned_cols=97 Identities=12% Similarity=0.071 Sum_probs=77.8
Q ss_pred cEEEEEeCCCcEEEEeCCC--ceEEcccCCCCEEEEEEeCCEEEEEEC---------CCcEEEEeCCCCccceEEEEccc
Q 000744 1009 KALMNLSSVNATELWHCNE--VTELDSSTNGEVLSLIHLKGRVLSSHS---------DGTIKMWDSGKRVLRLIQEVREH 1077 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~--~~~i~~~H~~~V~sl~fspd~LaSgs~---------Dg~I~vWd~~t~~~~~i~~l~~H 1077 (1306)
+++.+|...|+|.+-|.++ ..+....|++.|.++....+.|+|+|. |..|+|||++.. ..+.-+.-|
T Consensus 188 r~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm--ral~PI~~~ 265 (1118)
T KOG1275|consen 188 RNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMM--RALSPIQFP 265 (1118)
T ss_pred cEEEeecccceEEeecCCcCceeeeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhh--hccCCcccc
Confidence 7899999999999999986 456668999999999999999999886 667899999876 455555555
Q ss_pred CccEEEEEEcCC-CCEEEEEeCCCcEEEEEcC
Q 000744 1078 TRAVTCLYVPSS-GDKLYSGSLDKTIRVWSIK 1108 (1306)
Q Consensus 1078 ~~~V~sl~fspd-g~~L~Sgs~DgtI~VWdi~ 1108 (1306)
.++ .-+.|+|. ...++.+|..|...+-|..
T Consensus 266 ~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~ 296 (1118)
T KOG1275|consen 266 YGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTA 296 (1118)
T ss_pred cCc-hhhhhcccccceEEEEecccceeecccc
Confidence 544 56788884 4678888888998888843
No 398
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.028 Score=64.40 Aligned_cols=181 Identities=20% Similarity=0.211 Sum_probs=136.3
Q ss_pred hHHHHHHHHHHHccCCCCCchhhhhHhhcCCCHHHHHhhc--CChhHHHHHHHHHHhhhhccchhHHHHHHhcccchhhh
Q 000744 638 KDAAIEMLEQILMGGDKKSRSITALSLISANGIPALIKCL--DRVEVRRSIVSILLCCMHADKSCKTLIAKRIELSHVLD 715 (1306)
Q Consensus 638 k~aa~~lL~~l~~~~~~~~~~~n~~~i~~~g~i~~Lv~~l--~~~~~~~~~~~~L~~~~~~~~~~r~~i~~~~~~~~l~~ 715 (1306)
|-.|..-|+.++... .|+.-+++-||..+|+..| ...+-|..|+.++..|.+++..+-..+-+.++.+.|+.
T Consensus 100 ke~ald~Le~lve~i------DnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 100 KEDALDNLEELVEDI------DNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred HHHHHHHHHHHHHhh------hhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 567777777777665 8899999999999999988 78888999999999999999999999999999999999
Q ss_pred hhhc-CCchhHhHHHHHHHHHHhcchhhhHHHHHHHhhhcCCcchHHHHHHHhhcCCCcchhhH-HHHHHhhhcccCCcc
Q 000744 716 LFHD-GNDSVRGICINFLSELVLLNRRTFSNQILQVIRDEGSFSTMHTFLVYLQMAPMEQQPAT-ASLLLQLDLLVEPRK 793 (1306)
Q Consensus 716 ll~~-g~~~~k~~a~~~L~~L~~~~~~~~~~~~l~~i~~~g~~~~m~~ll~~l~~~~~~~~~~~-A~~l~~l~~l~~~~~ 793 (1306)
.|-+ ++...|-+|+.+++.|++.+.... .+...-+|+.. |-..|++...+.+... |..|+++-+..++..
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~-----~~fl~~~G~~~---L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~ 245 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKPGQ-----DEFLKLNGYQV---LRDVLQSNNTSVKLKRKALFLLSLLLQEDKSD 245 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcHHH-----HHHHhcCCHHH---HHHHHHcCCcchHHHHHHHHHHHHHHHhhhhh
Confidence 7764 455668999999999998876332 23333445444 7777787655555544 555555555566655
Q ss_pred ccccHHHHHHHHHHHHhcCCCchHHHHHHHHHHhcccee
Q 000744 794 MSMYREEAVEALIEALRRKDFPNSQMMALDALLSLTGRF 832 (1306)
Q Consensus 794 ~~~~reeai~~l~~~l~~~~~~~~q~~aa~~l~~l~g~~ 832 (1306)
..+......+..++.+........++.+-.+++.+--.+
T Consensus 246 ~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~ 284 (342)
T KOG2160|consen 246 EDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSEL 284 (342)
T ss_pred hhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHH
Confidence 567777777777777777766667777777776664333
No 399
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.72 E-value=0.37 Score=60.06 Aligned_cols=234 Identities=11% Similarity=0.063 Sum_probs=129.8
Q ss_pred cEEEEEeCCCcEEEEeCCCceEEcccCCC-C------E-EEEEEeCCEEEEEE---------CCCcEEEEeCCCCccceE
Q 000744 1009 KALMNLSSVNATELWHCNEVTELDSSTNG-E------V-LSLIHLKGRVLSSH---------SDGTIKMWDSGKRVLRLI 1071 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~~~i~~~H~~-~------V-~sl~fspd~LaSgs---------~Dg~I~vWd~~t~~~~~i 1071 (1306)
..++.++.|+.|.-+|.++...+...... . + .+..+..+.++.++ .+|.+..+|..+| +.+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG--~~~ 188 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETG--KLL 188 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCC--cee
Confidence 56778888999999998876555432211 1 1 12233446666665 3688999999999 666
Q ss_pred EEEcccCc--------------------cEE-EEEEcCCCCEEEEEeCCC------------------cEEEEEcCCCce
Q 000744 1072 QEVREHTR--------------------AVT-CLYVPSSGDKLYSGSLDK------------------TIRVWSIKPEEI 1112 (1306)
Q Consensus 1072 ~~l~~H~~--------------------~V~-sl~fspdg~~L~Sgs~Dg------------------tI~VWdi~~~~~ 1112 (1306)
..+..... .|+ ...+.+.+..++.++.|+ .|.-.|..+++.
T Consensus 189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 66543211 111 233444566788887665 688889998863
Q ss_pred eEEEeecCCC----------CeEEEE-eCCc---EEEEE-cCCCeEEEEEecCCEEEeccCCCeEEEEEeCCEEEEEE--
Q 000744 1113 HCLQVHNVKE----------AVHELT-ANAE---IACFV-SPATGVKVYNWSGAIKHINFNKHVKSLVMTGDKLYCGC-- 1175 (1306)
Q Consensus 1113 ~~i~~~~~~~----------~V~sl~-~~~~---~v~~s-~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs-- 1175 (1306)
.-........ .+..+. .++. .+.+. .+|. +...+......+|........+..+++.++.+.
T Consensus 269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~-l~ald~~tG~~~W~~~~~~~~~~~~~~~vyv~~~~ 347 (488)
T cd00216 269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGF-FYVLDRTTGKLISARPEVEQPMAYDPGLVYLGAFH 347 (488)
T ss_pred EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCce-EEEEECCCCcEeeEeEeeccccccCCceEEEcccc
Confidence 3222111110 011111 1111 22333 3444 556666555566654322223445566555543
Q ss_pred ----------------CCCcEEEEECCCCceeEEecCccccc-----CCccEEEEEEeCCcEEEEEEecCCCEEEEEECC
Q 000744 1176 ----------------SGYSIQEVDLGNLTSTTFYAGTKKLL-----GKQTIHSLHMHNGLLFAGGSSVDGTAGKVFSIS 1234 (1306)
Q Consensus 1176 ----------------~Dg~I~iwDl~~~~~~~~~~~~~~l~-----gh~~I~sl~~s~~~~llas~s~Dg~~I~IWD~~ 1234 (1306)
.+|.+.-.|+.+|+.+-.+....... ....-..+....+..|+ + +.|+ .++.+|..
T Consensus 348 ~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~-g-~~dG-~l~ald~~ 424 (488)
T cd00216 348 IPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFA-G-AADG-YFRAFDAT 424 (488)
T ss_pred ccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEE-E-CCCC-eEEEEECC
Confidence 36789999999999877654220000 00011123334444443 3 3577 89999999
Q ss_pred CCceEEEEecCCCE
Q 000744 1235 SKTAVGSFTTGIDI 1248 (1306)
Q Consensus 1235 t~~~l~~l~~~~~V 1248 (1306)
+|+.+.+++-...+
T Consensus 425 tG~~lW~~~~~~~~ 438 (488)
T cd00216 425 TGKELWKFRTPSGI 438 (488)
T ss_pred CCceeeEEECCCCc
Confidence 99999988754443
No 400
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=96.72 E-value=0.14 Score=61.55 Aligned_cols=279 Identities=15% Similarity=0.111 Sum_probs=157.8
Q ss_pred hcCCCCHHHHHHHHHHHHHHhhhcCCCcccccccccccchHHHHHHHhcCCcHHHHHHHHHHHHHHhccCcccccccccc
Q 000744 497 LCTSENLQECETAVLAIARLWKESKGDPGVHAYLLKPTIINGFAEILSASLSREVLRTSVYILSELMVADESVGDILTSV 576 (1306)
Q Consensus 497 Ll~s~~~~~~e~Av~~i~~L~~~~~~~~~~~~~i~~~~~I~~Lv~~L~~~~~~~~~e~Av~~L~~L~s~~~~~~~~I~~~ 576 (1306)
++..+|.-.+..|...+..|......+.. .....-..+-|...|.++.+...+..++..|.+|... +.+|..+.+
T Consensus 109 lL~~~d~~i~~~a~~iLt~l~~~~~~~~~---~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~~f~~- 183 (429)
T cd00256 109 LLNRQDQFIVHMSFSILAKLACFGLAKME---GSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRFAFVL- 183 (429)
T ss_pred HHcCCchhHHHHHHHHHHHHHhcCccccc---hhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHHHHHH-
Confidence 67777877888888888888765432210 0011113344555666654578888999999999444 559988887
Q ss_pred CCchHHHHHHHhc---Ch---HHHHHHHhccCCCHH---HHhhCCchHHHHHHhhcCCccccchhcccCchHHHHHHHHH
Q 000744 577 DSDFDCLAALLKN---GL---GEAAVLIYQLRPAFA---QLSAHEFIPSLVQLVLNKTEEFDELQFVMEPKDAAIEMLEQ 647 (1306)
Q Consensus 577 ~~~i~~Lv~lLk~---g~---~~Aa~aL~~L~~~~~---~i~~~g~i~~Lv~ll~~g~~~~~~~~~~~~~k~aa~~lL~~ 647 (1306)
.+++++|+.+|+. |. -++...|+.|+-+.. .....+.||.|+++++... +++-.- -++++|-+
T Consensus 184 ~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~-KEKvvR-------v~l~~l~N 255 (429)
T cd00256 184 ADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKEST-KEKVIR-------IVLAIFRN 255 (429)
T ss_pred ccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhh-hHHHHH-------HHHHHHHH
Confidence 4489999999987 33 688899999987433 3445799999999999865 222111 24555555
Q ss_pred HHccCCCCCchhhhhHhhcCCCHHHHHhhcCChhHHHHHHHHHHhhhhccchhHHHHHHhcccchhhhhhhcCC--chhH
Q 000744 648 ILMGGDKKSRSITALSLISANGIPALIKCLDRVEVRRSIVSILLCCMHADKSCKTLIAKRIELSHVLDLFHDGN--DSVR 725 (1306)
Q Consensus 648 l~~~~~~~~~~~n~~~i~~~g~i~~Lv~~l~~~~~~~~~~~~L~~~~~~~~~~r~~i~~~~~~~~l~~ll~~g~--~~~k 725 (1306)
|+.... ..+.+......++ ..+++++++.|.... +..=
T Consensus 256 ll~~~~-------------------------~~~~~~~~~~~mv---------------~~~l~~~l~~L~~rk~~DedL 295 (429)
T cd00256 256 LISKRV-------------------------DREVKKTAALQMV---------------QCKVLKTLQSLEQRKYDDEDL 295 (429)
T ss_pred Hhhccc-------------------------ccchhhhHHHHHH---------------HcChHHHHHHHhcCCCCcHHH
Confidence 553320 0011111111121 224566666665442 2223
Q ss_pred hHHHHHHHHHHhcch--hhhHHHHHHHhh-----------------------hcCCcchHHHHHHHhhcCCCcchhhHHH
Q 000744 726 GICINFLSELVLLNR--RTFSNQILQVIR-----------------------DEGSFSTMHTFLVYLQMAPMEQQPATAS 780 (1306)
Q Consensus 726 ~~a~~~L~~L~~~~~--~~~~~~~l~~i~-----------------------~~g~~~~m~~ll~~l~~~~~~~~~~~A~ 780 (1306)
...+..|.+.+..+- -+.-+.-..|+. ++..+...-.|..+|..+...+...+|.
T Consensus 296 ~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc 375 (429)
T cd00256 296 TDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVAC 375 (429)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhh
Confidence 345666666554431 111111112221 2233555667888887666555555554
Q ss_pred HHHhhhcccCCccccccHHHHHHHHHHHHhcCCCchHHHHHHHHHHhc
Q 000744 781 LLLQLDLLVEPRKMSMYREEAVEALIEALRRKDFPNSQMMALDALLSL 828 (1306)
Q Consensus 781 ~l~~l~~l~~~~~~~~~reeai~~l~~~l~~~~~~~~q~~aa~~l~~l 828 (1306)
-.+.-=.=--|++..+...-.....++.|-..+.+.++.+|-.|+.-|
T Consensus 376 ~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQkl 423 (429)
T cd00256 376 HDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKL 423 (429)
T ss_pred hhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 432211112254444444444455666666666678888877666554
No 401
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.70 E-value=0.0015 Score=59.14 Aligned_cols=46 Identities=26% Similarity=0.550 Sum_probs=34.9
Q ss_pred ccCcccccccCC-cEEc-CCCCcccHHHHHHHHHc--CCCCCCCCCCccC
Q 000744 344 FVCPITGQIFND-PVTL-ETGQTYERKAIQEWLKR--GNTTCPITRQPLC 389 (1306)
Q Consensus 344 ~~CpIc~~l~~d-Pv~~-~cGhtfc~~cI~~~~~~--~~~~CP~c~~~l~ 389 (1306)
-.||.|..--.| |++. .|+|.|=..||.+|++. .+..||+||++..
T Consensus 33 g~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 33 GCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred cCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 345666555444 6544 79999999999999995 4678999998754
No 402
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.0012 Score=71.40 Aligned_cols=49 Identities=22% Similarity=0.371 Sum_probs=41.2
Q ss_pred CCcccCcccccccCCcEEcC-CCCcccHHHHHHHHH-cCCCCCCCCCCccC
Q 000744 341 PKDFVCPITGQIFNDPVTLE-TGQTYERKAIQEWLK-RGNTTCPITRQPLC 389 (1306)
Q Consensus 341 ~~~~~CpIc~~l~~dPv~~~-cGhtfc~~cI~~~~~-~~~~~CP~c~~~l~ 389 (1306)
..+-.||+|++-=..|.++. |||.||+.||..... ....+||.|+....
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 36778999999999999775 999999999998776 33578999997644
No 403
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.63 E-value=0.0046 Score=45.66 Aligned_cols=38 Identities=34% Similarity=0.563 Sum_probs=34.9
Q ss_pred ceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 000744 1069 RLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWS 1106 (1306)
Q Consensus 1069 ~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWd 1106 (1306)
+++..+..|...|+++.|++++..+++|+.|+.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 56778888999999999999999999999999999996
No 404
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.62 E-value=0.86 Score=51.97 Aligned_cols=224 Identities=12% Similarity=0.080 Sum_probs=124.9
Q ss_pred cEEEEEeCCCcEEEEeCC-CceEEcccCCCCEEEEEEeCC--EEEEEECCCcEEEEeCCCCccceEEE------------
Q 000744 1009 KALMNLSSVNATELWHCN-EVTELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDSGKRVLRLIQE------------ 1073 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~-~~~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t~~~~~i~~------------ 1073 (1306)
+.|+.|..+| +.+++.. ........+...|..+...++ .+++- .||.+.++++..-.......
T Consensus 8 ~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~ 85 (275)
T PF00780_consen 8 DRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPT 85 (275)
T ss_pred CEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEE-cCCccEEEEchhhccccccccccccccccccc
Confidence 6788999988 8899883 333333344455999999884 44443 35999999987541111000
Q ss_pred EcccCccEEEEE--EcCCCCEEEEEeCCCcEEEEEcCCC--ce-eEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEe
Q 000744 1074 VREHTRAVTCLY--VPSSGDKLYSGSLDKTIRVWSIKPE--EI-HCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNW 1148 (1306)
Q Consensus 1074 l~~H~~~V~sl~--fspdg~~L~Sgs~DgtI~VWdi~~~--~~-~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~ 1148 (1306)
-......+..++ -...+...+.....++|.+|..... +. ...+.+...+.+.++.|.+..++++.... ..+.+.
T Consensus 86 ~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~-f~~idl 164 (275)
T PF00780_consen 86 KLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKG-FYLIDL 164 (275)
T ss_pred cccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCCc-eEEEec
Confidence 111223444444 1124444445555669999988764 23 56666777789999999666666665444 455555
Q ss_pred c-CCEE-Eecc-------------CCCeEEEEEeCCEEEEEECCCcEEEEECCCCceeEEecCcccccCCccEEEEEEeC
Q 000744 1149 S-GAIK-HINF-------------NKHVKSLVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHN 1213 (1306)
Q Consensus 1149 ~-~~~~-l~~~-------------~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~ 1213 (1306)
+ +... +... ..++..+....+.++.+. |..-.+.|. .|+..+ .+.-.+.. ...++.+..
T Consensus 165 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~-~~~g~fv~~-~G~~~r--~~~i~W~~--~p~~~~~~~ 238 (275)
T PF00780_consen 165 NTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY-DNIGVFVNK-NGEPSR--KSTIQWSS--APQSVAYSS 238 (275)
T ss_pred CCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe-cceEEEEcC-CCCcCc--ccEEEcCC--chhEEEEEC
Confidence 5 3222 2221 123445555544433333 333333344 333222 00001111 445666654
Q ss_pred CcEEEEEEecCCCEEEEEECCCCceEEEEecC
Q 000744 1214 GLLFAGGSSVDGTAGKVFSISSKTAVGSFTTG 1245 (1306)
Q Consensus 1214 ~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~~ 1245 (1306)
...++.. ++ .|.||++.++++++++...
T Consensus 239 pyli~~~---~~-~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 239 PYLIAFS---SN-SIEVRSLETGELVQTIPLP 266 (275)
T ss_pred CEEEEEC---CC-EEEEEECcCCcEEEEEECC
Confidence 4333322 45 6999999999999988743
No 405
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.0009 Score=83.76 Aligned_cols=48 Identities=27% Similarity=0.605 Sum_probs=42.9
Q ss_pred CCcccCcccccccCC-----cEEcCCCCcccHHHHHHHHHcCCCCCCCCCCccC
Q 000744 341 PKDFVCPITGQIFND-----PVTLETGQTYERKAIQEWLKRGNTTCPITRQPLC 389 (1306)
Q Consensus 341 ~~~~~CpIc~~l~~d-----Pv~~~cGhtfc~~cI~~~~~~~~~~CP~c~~~l~ 389 (1306)
..+-.|+||.|.|.. |..++|||.|+..|+..|++. ..+||.||..+.
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVLY 341 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhhh
Confidence 357899999999999 789999999999999999998 778999998443
No 406
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.58 E-value=0.08 Score=61.79 Aligned_cols=168 Identities=14% Similarity=0.155 Sum_probs=126.3
Q ss_pred ChhhHHHhhcCCCCHHHHHHHHHHHHHHhhhcCCCcccccccccccchHHHHHHHhcCCcHHHHHHHHHHHHHHhccCcc
Q 000744 489 GLKPYVTCLCTSENLQECETAVLAIARLWKESKGDPGVHAYLLKPTIINGFAEILSASLSREVLRTSVYILSELMVADES 568 (1306)
Q Consensus 489 ~~~~~l~~Ll~s~~~~~~e~Av~~i~~L~~~~~~~~~~~~~i~~~~~I~~Lv~~L~~~~~~~~~e~Av~~L~~L~s~~~~ 568 (1306)
.++..+++-+...+...-...+.=+..|+.-.+|+ ..+.+-|.|+-|+.+.-.. +++.+...+.+|+|| |-|-.
T Consensus 304 niV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK----~~M~~~~iveKL~klfp~~-h~dL~~~tl~LlfNl-SFD~g 377 (791)
T KOG1222|consen 304 NIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENK----IVMEQNGIVEKLLKLFPIQ-HPDLRKATLMLLFNL-SFDSG 377 (791)
T ss_pred hHHHHHHHHHcccchHHHHHHHHHHHHhhhhccch----HHHHhccHHHHHHHhcCCC-CHHHHHHHHHHhhhc-ccccc
Confidence 34444554454455544455667778888887655 5788999999999988888 899999999999999 88888
Q ss_pred ccccccccCCchHHHHHHHhcCh--HHHHHHHhccCC---CHHHHhhCCchHHHHHHhhcCCccccchhcccCchHHHHH
Q 000744 569 VGDILTSVDSDFDCLAALLKNGL--GEAAVLIYQLRP---AFAQLSAHEFIPSLVQLVLNKTEEFDELQFVMEPKDAAIE 643 (1306)
Q Consensus 569 ~~~~I~~~~~~i~~Lv~lLk~g~--~~Aa~aL~~L~~---~~~~i~~~g~i~~Lv~ll~~g~~~~~~~~~~~~~k~aa~~ 643 (1306)
+|..+++ .|-+|.|+.+|.+.+ .-|...||+||. -|....-.+.||.|...+-.|+...-+ .+
T Consensus 378 lr~KMv~-~GllP~l~~ll~~d~~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vd-----------l~ 445 (791)
T KOG1222|consen 378 LRPKMVN-GGLLPHLASLLDSDTKHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVD-----------LA 445 (791)
T ss_pred ccHHHhh-ccchHHHHHHhCCcccchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceec-----------HH
Confidence 9999987 899999999999987 458899999998 444555689999999988887743321 12
Q ss_pred HHHHHHccCCCCCchhhhhHhhcCCCHHHHHhhc
Q 000744 644 MLEQILMGGDKKSRSITALSLISANGIPALIKCL 677 (1306)
Q Consensus 644 lL~~l~~~~~~~~~~~n~~~i~~~g~i~~Lv~~l 677 (1306)
++..+ .+++.|.-|+..+.+-.|+..|++..
T Consensus 446 lia~c---iNl~lnkRNaQlvceGqgL~~LM~ra 476 (791)
T KOG1222|consen 446 LIALC---INLCLNKRNAQLVCEGQGLDLLMERA 476 (791)
T ss_pred HHHHH---HHHHhccccceEEecCcchHHHHHHH
Confidence 22222 35566778888888877887777653
No 407
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=96.57 E-value=0.64 Score=51.76 Aligned_cols=191 Identities=10% Similarity=0.043 Sum_probs=107.9
Q ss_pred CCCEEEEEEeCC--EEEEEECCCcEEEEeCCCCccceEEEEcc-------cCccEEEEEEcCC------CCEEEEEeCCC
Q 000744 1036 NGEVLSLIHLKG--RVLSSHSDGTIKMWDSGKRVLRLIQEVRE-------HTRAVTCLYVPSS------GDKLYSGSLDK 1100 (1306)
Q Consensus 1036 ~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~-------H~~~V~sl~fspd------g~~L~Sgs~Dg 1100 (1306)
.-.-.-++|||| .|+.+...|+|+++|+.+. . +..+.. -...|-.+.|.+. ...|+.-..+|
T Consensus 43 ~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~--~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G 119 (282)
T PF15492_consen 43 NPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS--E-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRG 119 (282)
T ss_pred CchheEEEECCCCcEEEEEcCCCeEEEEecccc--e-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccc
Confidence 344578999997 8999999999999999764 2 223221 2356777777542 22566777888
Q ss_pred cEEEEEcCCC--c-eeEEEee---c-CCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEE--eccCCCeEEEEEe---C
Q 000744 1101 TIRVWSIKPE--E-IHCLQVH---N-VKEAVHELTANAEIACFVSPATGVKVYNWSGAIKH--INFNKHVKSLVMT---G 1168 (1306)
Q Consensus 1101 tI~VWdi~~~--~-~~~i~~~---~-~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l--~~~~~~V~sl~~s---~ 1168 (1306)
.++=|-+..+ + .+....+ . .+..|.++. +.+..+.+.+......... ......+++-..- |
T Consensus 120 ~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~v-------y~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~P 192 (282)
T PF15492_consen 120 QLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAV-------YHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSP 192 (282)
T ss_pred eeeeEEEEcccCCcceeeEEEEecccCCCceeEEE-------EcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCC
Confidence 8887775432 1 2222221 1 345677766 4444444444333321110 0112233333332 2
Q ss_pred CE-EEEEECCCcE------EEEECCCCceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEE
Q 000744 1169 DK-LYCGCSGYSI------QEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVG 1240 (1306)
Q Consensus 1169 d~-L~sgs~Dg~I------~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~ 1240 (1306)
.+ .++...|+.. .+|.+-+.+ .|.. ..... .|..|..+|++.++++.+.+| .|.+|++.+-.+.+
T Consensus 193 yyk~v~~~~~~~~~~~~~~~~~~~~~~~---~fs~---~~~~~d~i~kmSlSPdg~~La~ih~sG-~lsLW~iPsL~~~~ 265 (282)
T PF15492_consen 193 YYKQVTSSEDDITASSKRRGLLRIPSFK---FFSR---QGQEQDGIFKMSLSPDGSLLACIHFSG-SLSLWEIPSLRLQR 265 (282)
T ss_pred cEEEccccCccccccccccceeecccee---eeec---cccCCCceEEEEECCCCCEEEEEEcCC-eEEEEecCcchhhc
Confidence 23 2333333321 233322221 1110 11122 899999999999999998888 89999999888777
Q ss_pred EEe
Q 000744 1241 SFT 1243 (1306)
Q Consensus 1241 ~l~ 1243 (1306)
.+.
T Consensus 266 ~W~ 268 (282)
T PF15492_consen 266 SWK 268 (282)
T ss_pred ccc
Confidence 775
No 408
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.50 E-value=0.0011 Score=77.01 Aligned_cols=51 Identities=20% Similarity=0.398 Sum_probs=44.0
Q ss_pred CCcccCcccccccCCcEEcCCCCcccHHHHHHHHH----cCCCCCCCCCCccCCC
Q 000744 341 PKDFVCPITGQIFNDPVTLETGQTYERKAIQEWLK----RGNTTCPITRQPLCSN 391 (1306)
Q Consensus 341 ~~~~~CpIc~~l~~dPv~~~cGhtfc~~cI~~~~~----~~~~~CP~c~~~l~~~ 391 (1306)
..+-.|-+|.+.-.||+..+|.|+|||.||.++.. ..+-+||.|...++-.
T Consensus 534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 35678999999999999999999999999988876 3456899999887654
No 409
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.46 E-value=0.7 Score=55.02 Aligned_cols=264 Identities=11% Similarity=0.072 Sum_probs=130.8
Q ss_pred CcEEEEeCCCceEEcccC-CCCEEEEEEeCC--EEEEEECCCcEEEEeCCCCccceEE-EEcc-------c---------
Q 000744 1018 NATELWHCNEVTELDSST-NGEVLSLIHLKG--RVLSSHSDGTIKMWDSGKRVLRLIQ-EVRE-------H--------- 1077 (1306)
Q Consensus 1018 g~I~IWd~~~~~~i~~~H-~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t~~~~~i~-~l~~-------H--------- 1077 (1306)
+.+.|||+.+........ ...+....|+|+ .++-. .++.|.+++..++ ...+ +..| -
T Consensus 23 ~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v-~~~nly~~~~~~~--~~~~lT~dg~~~i~nG~~dwvyeEEv 99 (353)
T PF00930_consen 23 GDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFV-RDNNLYLRDLATG--QETQLTTDGEPGIYNGVPDWVYEEEV 99 (353)
T ss_dssp EEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEE-ETTEEEEESSTTS--EEEESES--TTTEEESB--HHHHHHT
T ss_pred eeEEEEecCCCceEECcCCccccccceeecCCCeeEEE-ecCceEEEECCCC--CeEEeccccceeEEcCccceeccccc
Confidence 578889998754433332 577889999996 54444 4688999998776 2222 1112 0
Q ss_pred CccEEEEEEcCCCCEEEEEeCC-CcEEEEEc---CCCce--eEEEee--c-CCCCeEEEEeCCcEEEEEcCCCeEEEEEe
Q 000744 1078 TRAVTCLYVPSSGDKLYSGSLD-KTIRVWSI---KPEEI--HCLQVH--N-VKEAVHELTANAEIACFVSPATGVKVYNW 1148 (1306)
Q Consensus 1078 ~~~V~sl~fspdg~~L~Sgs~D-gtI~VWdi---~~~~~--~~i~~~--~-~~~~V~sl~~~~~~v~~s~dg~~I~i~~~ 1148 (1306)
-+.-..+.|||||++|+....| ..|+.+.+ ..... .....+ . .+.....+. +.+++.
T Consensus 100 ~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~--------------l~v~~~ 165 (353)
T PF00930_consen 100 FDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVS--------------LFVVDL 165 (353)
T ss_dssp SSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEE--------------EEEEES
T ss_pred cccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceE--------------EEEEEC
Confidence 1122467899999998876654 34443332 22110 011111 0 111111111 334444
Q ss_pred cCC-E-EE--e----ccCCCeEEEEEeCC-E-EEEE--ECCC---cEEEEECCCCceeEEecCcccccCCc-cEEEEEE-
Q 000744 1149 SGA-I-KH--I----NFNKHVKSLVMTGD-K-LYCG--CSGY---SIQEVDLGNLTSTTFYAGTKKLLGKQ-TIHSLHM- 1211 (1306)
Q Consensus 1149 ~~~-~-~l--~----~~~~~V~sl~~s~d-~-L~sg--s~Dg---~I~iwDl~~~~~~~~~~~~~~l~gh~-~I~sl~~- 1211 (1306)
.+. . .+ . .....+..+.|.++ . ++.. ..+. .+.++|..++........... +-- .-....+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~--~Wv~~~~~~~~~ 243 (353)
T PF00930_consen 166 ASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSD--GWVDVYDPPHFL 243 (353)
T ss_dssp SSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESS--SSSSSSSEEEE-
T ss_pred CCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCC--cceeeecccccc
Confidence 422 1 11 1 13456778888755 2 3333 3332 366778877665444321111 100 1123333
Q ss_pred -eCCcEEEEEEecCCC-EEEEEECCCCceEEEEe-cCCCEEE-EEEcCc---EEEEEECCC----cEEEEECCCCeEEEE
Q 000744 1212 -HNGLLFAGGSSVDGT-AGKVFSISSKTAVGSFT-TGIDIQH-LAVNSD---FIFTATKCG----TIEVWLKERVTRVAS 1280 (1306)
Q Consensus 1212 -s~~~~llas~s~Dg~-~I~IWD~~t~~~l~~l~-~~~~V~s-la~spd---~Lasgs~Dg----~I~IWd~~tg~~l~~ 1280 (1306)
.++..++-....||- .|.+++..++.. ..+. +.-.|+. +.++++ +.+++..++ .++.-++.++..+..
T Consensus 244 ~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~ 322 (353)
T PF00930_consen 244 GPDGNEFLWISERDGYRHLYLYDLDGGKP-RQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKC 322 (353)
T ss_dssp TTTSSEEEEEEETTSSEEEEEEETTSSEE-EESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEE
T ss_pred cCCCCEEEEEEEcCCCcEEEEEcccccce-eccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEe
Confidence 355555555555552 566666666553 3444 4455755 556665 555665533 455556662334555
Q ss_pred EecccCCCCCCCeEEEEEcCCCCccC
Q 000744 1281 VKANNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1281 l~~~~~~~~~~~V~slafSpdg~~La 1306 (1306)
+.. .. ..-..+.|||||++++
T Consensus 323 LT~---~~--~~~~~~~~Spdg~y~v 343 (353)
T PF00930_consen 323 LTC---ED--GDHYSASFSPDGKYYV 343 (353)
T ss_dssp SST---TS--STTEEEEE-TTSSEEE
T ss_pred ccC---CC--CCceEEEECCCCCEEE
Confidence 553 11 1116999999999875
No 410
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.32 E-value=0.029 Score=65.29 Aligned_cols=177 Identities=18% Similarity=0.190 Sum_probs=123.1
Q ss_pred cHHHHHHHHHHHHHHhccCccccccccccCCchHHHHHHHhcCh---HHH-HHHHhccCC---CHHHHhhCCchHHHHHH
Q 000744 548 SREVLRTSVYILSELMVADESVGDILTSVDSDFDCLAALLKNGL---GEA-AVLIYQLRP---AFAQLSAHEFIPSLVQL 620 (1306)
Q Consensus 548 ~~~~~e~Av~~L~~L~s~~~~~~~~I~~~~~~i~~Lv~lLk~g~---~~A-a~aL~~L~~---~~~~i~~~g~i~~Lv~l 620 (1306)
.++..+.|++.|+||+ -|-..-..+.+ ..-+..||+.|...+ .-+ ..-|..||. ||..|++.|.|.-|+.+
T Consensus 276 QeqLLrva~ylLlNlA-ed~~~ElKMrr-kniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~kl 353 (791)
T KOG1222|consen 276 QEQLLRVAVYLLLNLA-EDISVELKMRR-KNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKL 353 (791)
T ss_pred HHHHHHHHHHHHHHHh-hhhhHHHHHHH-HhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHh
Confidence 4566789999999993 33222223333 566778888887654 222 222344555 99999999999999999
Q ss_pred hhcCCccccchhcccCchHHHHHHHHHHHccCCCCCchhhhhHhhcCCCHHHHHhhcCChhHHHHHHHHHHhhhhccchh
Q 000744 621 VLNKTEEFDELQFVMEPKDAAIEMLEQILMGGDKKSRSITALSLISANGIPALIKCLDRVEVRRSIVSILLCCMHADKSC 700 (1306)
Q Consensus 621 l~~g~~~~~~~~~~~~~k~aa~~lL~~l~~~~~~~~~~~n~~~i~~~g~i~~Lv~~l~~~~~~~~~~~~L~~~~~~~~~~ 700 (1306)
+....+... .+.+.+| |+++....++..+|..|-+|-|+.+|++...+..|+-+|. .+..|+..
T Consensus 354 fp~~h~dL~---------~~tl~Ll------fNlSFD~glr~KMv~~GllP~l~~ll~~d~~~~iA~~~lY-h~S~dD~~ 417 (791)
T KOG1222|consen 354 FPIQHPDLR---------KATLMLL------FNLSFDSGLRPKMVNGGLLPHLASLLDSDTKHGIALNMLY-HLSCDDDA 417 (791)
T ss_pred cCCCCHHHH---------HHHHHHh------hhccccccccHHHhhccchHHHHHHhCCcccchhhhhhhh-hhccCcHH
Confidence 888663331 1334443 5666777899999999999999999976666666666665 56788999
Q ss_pred HHHHHHhcccchhhhhhhcCCchhHhHHHHHHHHHHhcchhh
Q 000744 701 KTLIAKRIELSHVLDLFHDGNDSVRGICINFLSELVLLNRRT 742 (1306)
Q Consensus 701 r~~i~~~~~~~~l~~ll~~g~~~~k~~a~~~L~~L~~~~~~~ 742 (1306)
+.+.+...+++.+...+-+|+...-..++-+|+-=+++|+|.
T Consensus 418 K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRN 459 (791)
T KOG1222|consen 418 KAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRN 459 (791)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcccc
Confidence 999999999999999777777655444444443333555543
No 411
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.27 E-value=0.19 Score=62.36 Aligned_cols=137 Identities=13% Similarity=0.026 Sum_probs=84.9
Q ss_pred CCcEEEEEcCCCeEEEEEecCC----EEEeccCCCeEEEEEe----------CCEEEEEECCCcEEEEECCC----C-ce
Q 000744 1130 NAEIACFVSPATGVKVYNWSGA----IKHINFNKHVKSLVMT----------GDKLYCGCSGYSIQEVDLGN----L-TS 1190 (1306)
Q Consensus 1130 ~~~~v~~s~dg~~I~i~~~~~~----~~l~~~~~~V~sl~~s----------~d~L~sgs~Dg~I~iwDl~~----~-~~ 1190 (1306)
+...+.++++|+.+.+-+.+.. .........-..+.|+ +++... .++.|.++|..+ + +.
T Consensus 236 npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v 313 (635)
T PRK02888 236 NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSAL 313 (635)
T ss_pred CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEE--CCCEEEEEECCccccCCcce
Confidence 4455668888887777664421 2222222222444444 223333 367899999988 3 34
Q ss_pred eEEecCcccccCCccEEEEEEeCCcEEEEEEecCCCEEEEEECCCCc------------eEEEEecCCCEEEEEEcCc--
Q 000744 1191 TTFYAGTKKLLGKQTIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKT------------AVGSFTTGIDIQHLAVNSD-- 1256 (1306)
Q Consensus 1191 ~~~~~~~~~l~gh~~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~------------~l~~l~~~~~V~sla~spd-- 1256 (1306)
+..+...+ ....+.++|++.++..++.-.+++.|.|+.+.+ .+....-+......+|+++
T Consensus 314 ~~yIPVGK------sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~ 387 (635)
T PRK02888 314 TRYVPVPK------NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGN 387 (635)
T ss_pred EEEEECCC------CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCC
Confidence 44332211 567799998877666655544589999998855 2444443444567788887
Q ss_pred EEEEEECCCcEEEEECCC
Q 000744 1257 FIFTATKCGTIEVWLKER 1274 (1306)
Q Consensus 1257 ~Lasgs~Dg~I~IWd~~t 1274 (1306)
...|---|..|-.||+.+
T Consensus 388 aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 388 AYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEEeEeecceeEEEehHH
Confidence 555667889999999886
No 412
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.24 E-value=0.28 Score=59.70 Aligned_cols=173 Identities=12% Similarity=0.065 Sum_probs=83.4
Q ss_pred ccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEe--CCcEEEEEcCCCeEEEE-EecCCE
Q 000744 1076 EHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTA--NAEIACFVSPATGVKVY-NWSGAI 1152 (1306)
Q Consensus 1076 ~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~--~~~~v~~s~dg~~I~i~-~~~~~~ 1152 (1306)
...-....+.++|+|++++.++ ||...|+..... +.. .. +.-.+..| .+.+++... +..|.++ +.++..
T Consensus 30 ~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~--r~k-~~---G~g~~~vw~~~n~yAv~~~-~~~I~I~kn~~~~~ 101 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAW--RNK-AF---GSGLSFVWSSRNRYAVLES-SSTIKIYKNFKNEV 101 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTT--EEE-EE---EE-SEEEE-TSSEEEEE-T-TS-EEEEETTEE-T
T ss_pred CCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCC--ccc-cc---CceeEEEEecCccEEEEEC-CCeEEEEEcCcccc
Confidence 3444578899999999998854 677777774432 111 11 22233343 233333333 3334442 222111
Q ss_pred -EEeccCCCeEEEEEeCCEEEEEECCCcEEEEECCCCceeEEecCcccccCCccEEEEEEeCCcEEEEEEecCCCEEEEE
Q 000744 1153 -KHINFNKHVKSLVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLLFAGGSSVDGTAGKVF 1231 (1306)
Q Consensus 1153 -~l~~~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~s~Dg~~I~IW 1231 (1306)
+.......+..+-. +.++....++.|.+||..+++.+..+... +|..+.|++++.+++-.+ +. ++.|+
T Consensus 102 ~k~i~~~~~~~~If~--G~LL~~~~~~~i~~yDw~~~~~i~~i~v~-------~vk~V~Ws~~g~~val~t-~~-~i~il 170 (443)
T PF04053_consen 102 VKSIKLPFSVEKIFG--GNLLGVKSSDFICFYDWETGKLIRRIDVS-------AVKYVIWSDDGELVALVT-KD-SIYIL 170 (443)
T ss_dssp T-----SS-EEEEE---SSSEEEEETTEEEEE-TTT--EEEEESS--------E-EEEEE-TTSSEEEEE--S--SEEEE
T ss_pred ceEEcCCcccceEEc--CcEEEEECCCCEEEEEhhHcceeeEEecC-------CCcEEEEECCCCEEEEEe-CC-eEEEE
Confidence 11112222333322 44444445558999999999998865421 578999998766666554 34 48888
Q ss_pred ECCCC-----------ceEEEEec-CCCEEEEEEcCc-EEEEEECCCcEEE
Q 000744 1232 SISSK-----------TAVGSFTT-GIDIQHLAVNSD-FIFTATKCGTIEV 1269 (1306)
Q Consensus 1232 D~~t~-----------~~l~~l~~-~~~V~sla~spd-~Lasgs~Dg~I~I 1269 (1306)
+.+.. .....+.. ...|.+..|..+ +++|... .|+.
T Consensus 171 ~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT~~--~lkY 219 (443)
T PF04053_consen 171 KYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVEDCFIYTTSN--HLKY 219 (443)
T ss_dssp EE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETTEEEEE-TT--EEEE
T ss_pred EecchhcccccccCchhceEEEEEecceeEEEEEEcCEEEEEcCC--eEEE
Confidence 75433 13333333 667889999888 5555433 5655
No 413
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.23 E-value=0.046 Score=63.86 Aligned_cols=128 Identities=16% Similarity=0.208 Sum_probs=92.6
Q ss_pred hhHHHhhcCCCCHHHHHHHHHHHHHHhhhcCCCcccccccccccchHHHHHHHhcCC---cHHHHHHHHHHHHHHhccCc
Q 000744 491 KPYVTCLCTSENLQECETAVLAIARLWKESKGDPGVHAYLLKPTIINGFAEILSASL---SREVLRTSVYILSELMVADE 567 (1306)
Q Consensus 491 ~~~l~~Ll~s~~~~~~e~Av~~i~~L~~~~~~~~~~~~~i~~~~~I~~Lv~~L~~~~---~~~~~e~Av~~L~~L~s~~~ 567 (1306)
.+++. ++.++|...++.|+..+..|....+... .-...++++.++..|.+.. +.+.+..++.+|.+| .+.+
T Consensus 108 ~~fl~-ll~~~D~~i~~~a~~iLt~Ll~~~~~~~----~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~L-L~~~ 181 (312)
T PF03224_consen 108 SPFLK-LLDRNDSFIQLKAAFILTSLLSQGPKRS----EKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNL-LRSK 181 (312)
T ss_dssp HHHHH-H-S-SSHHHHHHHHHHHHHHHTSTTT------HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHH-HTSH
T ss_pred HHHHH-HhcCCCHHHHHHHHHHHHHHHHcCCccc----cchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHH-hCcc
Confidence 34444 7888899999999999999988776432 1111477899999998843 456779999999999 5777
Q ss_pred cccccccccCCchHHHHHHH------hcCh-----HHHHHHHhccCC---CHHHHhhCCchHHHHHHhhcCC
Q 000744 568 SVGDILTSVDSDFDCLAALL------KNGL-----GEAAVLIYQLRP---AFAQLSAHEFIPSLVQLVLNKT 625 (1306)
Q Consensus 568 ~~~~~I~~~~~~i~~Lv~lL------k~g~-----~~Aa~aL~~L~~---~~~~i~~~g~i~~Lv~ll~~g~ 625 (1306)
.+|..+.+ .+.++.|+.+| .++. .++...|+.|+- ....+...+.||.|+++++...
T Consensus 182 ~~R~~f~~-~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~ 252 (312)
T PF03224_consen 182 EYRQVFWK-SNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSI 252 (312)
T ss_dssp HHHHHHHT-HHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--
T ss_pred hhHHHHHh-cCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcc
Confidence 79999998 99999999999 2222 689999999988 4455667889999999998865
No 414
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.052 Score=67.47 Aligned_cols=199 Identities=16% Similarity=0.092 Sum_probs=129.5
Q ss_pred hHHHHHHHhcCCcHHHHHHHHHHHHHHhc-cCccccccccccCCchHHHHHHHhcCh-----HHHHHHHhccCC----CH
Q 000744 536 INGFAEILSASLSREVLRTSVYILSELMV-ADESVGDILTSVDSDFDCLAALLKNGL-----GEAAVLIYQLRP----AF 605 (1306)
Q Consensus 536 I~~Lv~~L~~~~~~~~~e~Av~~L~~L~s-~~~~~~~~I~~~~~~i~~Lv~lLk~g~-----~~Aa~aL~~L~~----~~ 605 (1306)
+..|+.=|....++-.|-.|+.=|.++.+ .+++.-. +.-++.-+|.||.||+... ..|+-||++|+- +.
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs-~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLS-GFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhc-cccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 56666666666566666667766766654 4443333 4446789999999999864 789999999954 77
Q ss_pred HHHhhCCchHHHHHHhhcCCccccchhcccCchHHHHHHHHHHHccCCCCCchhhhhHhhcCCCHHHHHhhc---CChhH
Q 000744 606 AQLSAHEFIPSLVQLVLNKTEEFDELQFVMEPKDAAIEMLEQILMGGDKKSRSITALSLISANGIPALIKCL---DRVEV 682 (1306)
Q Consensus 606 ~~i~~~g~i~~Lv~ll~~g~~~~~~~~~~~~~k~aa~~lL~~l~~~~~~~~~~~n~~~i~~~g~i~~Lv~~l---~~~~~ 682 (1306)
...+..++||.|++=|..=.+.. .++ -+.-.|+.|. -++-.+|..+|||...+..| ....+
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiD-vAE-------Q~LqALE~iS--------R~H~~AiL~AG~l~a~LsylDFFSi~aQ 311 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYID-VAE-------QSLQALEKIS--------RRHPKAILQAGALSAVLSYLDFFSIHAQ 311 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhH-HHH-------HHHHHHHHHH--------hhccHHHHhcccHHHHHHHHHHHHHHHH
Confidence 77888999999999888765221 111 1223334332 35678999999999999998 45555
Q ss_pred HHHHHHHHHh-hhhccchhHHHHHHhcccchhhhhhhcCCchhHhHHHHHHHHHHhcchhhhHHHHHHHhhhcCC
Q 000744 683 RRSIVSILLC-CMHADKSCKTLIAKRIELSHVLDLFHDGNDSVRGICINFLSELVLLNRRTFSNQILQVIRDEGS 756 (1306)
Q Consensus 683 ~~~~~~~L~~-~~~~~~~~r~~i~~~~~~~~l~~ll~~g~~~~k~~a~~~L~~L~~~~~~~~~~~~l~~i~~~g~ 756 (1306)
|. |+++..+ |..-....-+++++. +|-|-.||.-.+++.-|.+.--|.-+++. ...-..-|+++...|=
T Consensus 312 R~-AlaiaaN~Cksi~sd~f~~v~ea--lPlL~~lLs~~D~k~ies~~ic~~ri~d~--f~h~~~kLdql~s~dL 381 (1051)
T KOG0168|consen 312 RV-ALAIAANCCKSIRSDEFHFVMEA--LPLLTPLLSYQDKKPIESVCICLTRIADG--FQHGPDKLDQLCSHDL 381 (1051)
T ss_pred HH-HHHHHHHHHhcCCCccchHHHHH--HHHHHHHHhhccchhHHHHHHHHHHHHHh--cccChHHHHHHhchhH
Confidence 55 5555555 655555666777765 56677788888887766655555444422 1222234455554443
No 415
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=96.16 E-value=0.0021 Score=72.78 Aligned_cols=35 Identities=17% Similarity=0.545 Sum_probs=31.6
Q ss_pred CCcccCcccccccCCcEEcCCCCcccHHHHHHHHH
Q 000744 341 PKDFVCPITGQIFNDPVTLETGQTYERKAIQEWLK 375 (1306)
Q Consensus 341 ~~~~~CpIc~~l~~dPv~~~cGhtfc~~cI~~~~~ 375 (1306)
++++.||||...++||++++|||+.|+.|-...+-
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILV 36 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence 48899999999999999999999999999875543
No 416
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.021 Score=68.79 Aligned_cols=88 Identities=15% Similarity=0.112 Sum_probs=71.1
Q ss_pred CCEEEEEEeC--CEEEEEECCCcEEEEeCCCCccceEEEEcccCccEE-EEEEcCCCCEEEEEeCCCcEEEEEcCCCcee
Q 000744 1037 GEVLSLIHLK--GRVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVT-CLYVPSSGDKLYSGSLDKTIRVWSIKPEEIH 1113 (1306)
Q Consensus 1037 ~~V~sl~fsp--d~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~-sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~ 1113 (1306)
..|.-+.|+| +.||.+..+|.|-+..+. . +.+.++.-|...++ +++|.|||+.++.|-.||+|++.|+.++.
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~--qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~-- 95 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-W--QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG-- 95 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-c--ceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC--
Confidence 3477889999 599999999999999988 3 77888987888888 99999999999999999999999999984
Q ss_pred EEEe--ecCCCCeEEEEe
Q 000744 1114 CLQV--HNVKEAVHELTA 1129 (1306)
Q Consensus 1114 ~i~~--~~~~~~V~sl~~ 1129 (1306)
.+.. +.....|.++.|
T Consensus 96 ~l~~~~~s~e~~is~~~w 113 (665)
T KOG4640|consen 96 RLVSFLFSVETDISKGIW 113 (665)
T ss_pred ceeccccccccchheeec
Confidence 2222 223355555554
No 417
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.12 E-value=0.092 Score=67.23 Aligned_cols=120 Identities=15% Similarity=0.137 Sum_probs=83.0
Q ss_pred ECCCcEEEEECCCCceeEEecCcccccCCccEEEEEEe-------CCcEEEEEEecCCCEEEEEECCCC--ceEE----E
Q 000744 1175 CSGYSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMH-------NGLLFAGGSSVDGTAGKVFSISSK--TAVG----S 1241 (1306)
Q Consensus 1175 s~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s-------~~~~llas~s~Dg~~I~IWD~~t~--~~l~----~ 1241 (1306)
.....++-.|+..|+.+..+..+.. .+|..++-. +...|++-+ ++ .+.-||.+-. +++. .
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~----~~v~~~~p~~K~aqlt~e~tflGls--~n-~lfriDpR~~~~k~v~~~~k~ 573 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDD----IPVVDIAPDSKFAQLTNEQTFLGLS--DN-SLFRIDPRLSGNKLVDSQSKQ 573 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCC----cceeEecccccccccCCCceEEEEC--CC-ceEEeccCCCCCceeeccccc
Confidence 3567899999999999987764321 145555442 445565543 44 6999999763 2332 2
Q ss_pred EecCCCEEEEEEcCc-EEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCCCccC
Q 000744 1242 FTTGIDIQHLAVNSD-FIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1242 l~~~~~V~sla~spd-~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~~La 1306 (1306)
+......+|++-+.+ +||.||.+|.||+||. .|+.-++.- .+-..+|.+|..+.||+||+
T Consensus 574 Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~l----p~lG~pI~~iDvt~DGkwil 634 (794)
T PF08553_consen 574 YSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTAL----PGLGDPIIGIDVTADGKWIL 634 (794)
T ss_pred cccCCCceEEEecCCceEEEEeCCCcEEeecc-cchhhhhcC----CCCCCCeeEEEecCCCcEEE
Confidence 223456899999988 9999999999999995 344333332 12347999999999999974
No 418
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.02 E-value=1.8 Score=52.65 Aligned_cols=186 Identities=13% Similarity=0.091 Sum_probs=102.0
Q ss_pred cEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCce----eEEEeec-CCCCeEEEEe-C
Q 000744 1057 TIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEI----HCLQVHN-VKEAVHELTA-N 1130 (1306)
Q Consensus 1057 ~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~----~~i~~~~-~~~~V~sl~~-~ 1130 (1306)
.|.||+.... .+.++.--.+.|.++.|+.+ ..|+....||+++++|+..... ..+...+ ....+....+ .
T Consensus 62 ~I~iys~sG~---ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~ 137 (410)
T PF04841_consen 62 SIQIYSSSGK---LLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYK 137 (410)
T ss_pred EEEEECCCCC---EeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCC
Confidence 4899988764 55555444489999999875 4666778999999999975420 0000000 0111222233 3
Q ss_pred CcEEEEEcCCCeEEEEEecCCEEEe---ccCC---------CeEE-EEEe--CCEEEEEECCCcEEEEECCCCceeEEec
Q 000744 1131 AEIACFVSPATGVKVYNWSGAIKHI---NFNK---------HVKS-LVMT--GDKLYCGCSGYSIQEVDLGNLTSTTFYA 1195 (1306)
Q Consensus 1131 ~~~v~~s~dg~~I~i~~~~~~~~l~---~~~~---------~V~s-l~~s--~d~L~sgs~Dg~I~iwDl~~~~~~~~~~ 1195 (1306)
..++....+++...+-+.+...+.. .... .... ..++ ....+....++.+.+.+-...+.
T Consensus 138 ~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~----- 212 (410)
T PF04841_consen 138 NGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ----- 212 (410)
T ss_pred CCEEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc-----
Confidence 5566666666644454444322111 0000 0000 1111 11233333444444333222111
Q ss_pred CcccccCCccEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEecC--CCEEEEEEcCc
Q 000744 1196 GTKKLLGKQTIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFTTG--IDIQHLAVNSD 1256 (1306)
Q Consensus 1196 ~~~~l~gh~~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~~--~~V~sla~spd 1256 (1306)
+..+.++..+++||++.+++....+| .+.|.+..-.+....+... .....+.|+.+
T Consensus 213 ----i~~~~~i~~iavSpng~~iAl~t~~g-~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~ 270 (410)
T PF04841_consen 213 ----IDSDGPIIKIAVSPNGKFIALFTDSG-NLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGN 270 (410)
T ss_pred ----ccCCCCeEEEEECCCCCEEEEEECCC-CEEEEECcccceeEEeecCcCCCCcEEEEECC
Confidence 11222899999999988888876666 7888877666666666533 45677888775
No 419
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.005 Score=68.98 Aligned_cols=47 Identities=30% Similarity=0.608 Sum_probs=40.1
Q ss_pred CcccCcccccccC-Cc------------EEcCCCCcccHHHHHHHHHcCCCCCCCCCCccC
Q 000744 342 KDFVCPITGQIFN-DP------------VTLETGQTYERKAIQEWLKRGNTTCPITRQPLC 389 (1306)
Q Consensus 342 ~~~~CpIc~~l~~-dP------------v~~~cGhtfc~~cI~~~~~~~~~~CP~c~~~l~ 389 (1306)
+|-.|-||++-|. -| .-++|||-+=-.|+..|++. ..+||.||.++.
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p~i 345 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRPVI 345 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCccc
Confidence 6788999998743 33 68999999999999999998 678999999854
No 420
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.96 E-value=0.061 Score=65.81 Aligned_cols=204 Identities=13% Similarity=0.119 Sum_probs=119.2
Q ss_pred CEEEEEEeCCEEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEe
Q 000744 1038 EVLSLIHLKGRVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQV 1117 (1306)
Q Consensus 1038 ~V~sl~fspd~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~ 1117 (1306)
..+|++-+.++++.|+.-|.+++|+-.++. -......+-.+.+..+..|++..+++.|+..|.|.|+.+..+......
T Consensus 37 ~lTc~dst~~~l~~GsS~G~lyl~~R~~~~-~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~- 114 (726)
T KOG3621|consen 37 KLTCVDATEEYLAMGSSAGSVYLYNRHTGE-MRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLD- 114 (726)
T ss_pred EEEEeecCCceEEEecccceEEEEecCchh-hhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcce-
Confidence 356676677899999999999999998872 122233344556777788888999999999999999988764211110
Q ss_pred ecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCC--EEEEEECCCcEEEEECCCCceeEEec
Q 000744 1118 HNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGD--KLYCGCSGYSIQEVDLGNLTSTTFYA 1195 (1306)
Q Consensus 1118 ~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d--~L~sgs~Dg~I~iwDl~~~~~~~~~~ 1195 (1306)
.+.+... .|+..|++++|+++ .+++|..-|+|.+-.+.+. ....+.
T Consensus 115 -----------------~~t~~d~--------------~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~-~~~~~~ 162 (726)
T KOG3621|consen 115 -----------------YVTPCDK--------------SHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSR-QAFLSK 162 (726)
T ss_pred -----------------eeccccc--------------cCCceEEEEEecccccEEeecCCCceEEEEEechh-hhhccc
Confidence 0111111 14556666666655 6888988899888887762 111111
Q ss_pred CcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCce--EEEEecCCC-EEEEEEcC-----c--EEEEEECC
Q 000744 1196 GTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTA--VGSFTTGID-IQHLAVNS-----D--FIFTATKC 1264 (1306)
Q Consensus 1196 ~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~--l~~l~~~~~-V~sla~sp-----d--~Lasgs~D 1264 (1306)
.+ .+.... .|..+.+....+++++. - .-.+++++.+.. +.+-.-.+. -...+|-| . .|+++--.
T Consensus 163 ~q-~il~~ds~IVQlD~~q~~LLVStl--~--r~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG 237 (726)
T KOG3621|consen 163 SQ-EILSEDSEIVQLDYLQSYLLVSTL--T--RCILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG 237 (726)
T ss_pred cc-eeeccCcceEEeecccceehHhhh--h--hhheeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCC
Confidence 11 122222 67777776776666654 1 245566554431 111111111 12223322 1 66666443
Q ss_pred CcEEEEECC-CCeEEEEEe
Q 000744 1265 GTIEVWLKE-RVTRVASVK 1282 (1306)
Q Consensus 1265 g~I~IWd~~-tg~~l~~l~ 1282 (1306)
.|+|..+ .|+.+++.+
T Consensus 238 --~RlWead~~G~V~~Thq 254 (726)
T KOG3621|consen 238 --LRLWEADFAGEVIKTHQ 254 (726)
T ss_pred --CceEEeecceeEEEeee
Confidence 5778664 366666654
No 421
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.88 E-value=4.1 Score=51.17 Aligned_cols=57 Identities=14% Similarity=0.093 Sum_probs=43.3
Q ss_pred EEEEEECCCCceEEEEecCCC-EEE-EEEcCcEEEEEECCCcEEEEECCCCeEEEEEec
Q 000744 1227 AGKVFSISSKTAVGSFTTGID-IQH-LAVNSDFIFTATKCGTIEVWLKERVTRVASVKA 1283 (1306)
Q Consensus 1227 ~I~IWD~~t~~~l~~l~~~~~-V~s-la~spd~Lasgs~Dg~I~IWd~~tg~~l~~l~~ 1283 (1306)
.|.-||+.+++.+...+...+ ..+ +....+.++.++.||.++.+|.+||+.+-.+..
T Consensus 442 ~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 442 SLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred eEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 688899999998887764332 112 333445777788899999999999999988874
No 422
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.88 E-value=0.74 Score=59.99 Aligned_cols=225 Identities=8% Similarity=0.048 Sum_probs=116.7
Q ss_pred cEEEEEeCCCcEEEEeCCCceE-EcccCCCCEEEEEEeCC--EEEEEECCCcEEEEeC----CCCc--------------
Q 000744 1009 KALMNLSSVNATELWHCNEVTE-LDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDS----GKRV-------------- 1067 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~~~-i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~----~t~~-------------- 1067 (1306)
.-++.+..+|.|.+-|..+... +...-.+.|.+++|+|| .++-.+.++++.+-+- -..+
T Consensus 81 ~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~ 160 (1265)
T KOG1920|consen 81 NSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVN 160 (1265)
T ss_pred ceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccce
Confidence 4466777789999999886433 33334778999999997 6666666677765432 1100
Q ss_pred --c-ceEEEEcccC---------------------ccEEEEEEcCCCCEEEEE-----eCCCcEEEEEcCCCceeEEEee
Q 000744 1068 --L-RLIQEVREHT---------------------RAVTCLYVPSSGDKLYSG-----SLDKTIRVWSIKPEEIHCLQVH 1118 (1306)
Q Consensus 1068 --~-~~i~~l~~H~---------------------~~V~sl~fspdg~~L~Sg-----s~DgtI~VWdi~~~~~~~i~~~ 1118 (1306)
| ..-..|+|.. +.=++|.|--||+++++. ..-+.|+|||-+ |.+....
T Consensus 161 VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~s-- 237 (1265)
T KOG1920|consen 161 VGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTS-- 237 (1265)
T ss_pred ecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhccc--
Confidence 0 0011222111 111357888888888873 333788888876 3211111
Q ss_pred cCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCCEEEEEECCCcEEEEECCCCceeEEecCcc
Q 000744 1119 NVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTK 1198 (1306)
Q Consensus 1119 ~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~ 1198 (1306)
.++.. -...+.|-|.|..+.. +-.-+.|+.|.+|.-+. -....|.-
T Consensus 238 ---e~~~~---l~~~LsWkPsgs~iA~-------------------------iq~~~sd~~IvffErNG-L~hg~f~l-- 283 (1265)
T KOG1920|consen 238 ---EPVEG---LQHSLSWKPSGSLIAA-------------------------IQCKTSDSDIVFFERNG-LRHGEFVL-- 283 (1265)
T ss_pred ---Ccccc---cccceeecCCCCeEee-------------------------eeecCCCCcEEEEecCC-cccccccc--
Confidence 11111 1122235555542221 12233466788887543 22222221
Q ss_pred cccCCc-cEEEEEEeCCcEEEEE--EecCCCEEEEEECCCCc--eEEEEecCCCEEEEEEcCc---EEEEEECCCcEEEE
Q 000744 1199 KLLGKQ-TIHSLHMHNGLLFAGG--SSVDGTAGKVFSISSKT--AVGSFTTGIDIQHLAVNSD---FIFTATKCGTIEVW 1270 (1306)
Q Consensus 1199 ~l~gh~-~I~sl~~s~~~~llas--~s~Dg~~I~IWD~~t~~--~l~~l~~~~~V~sla~spd---~Lasgs~Dg~I~IW 1270 (1306)
...... +|..++|+.++.++++ +...+..|++|-+.+.. ....+.-..... +.|+|. .+..-..+|.+.++
T Consensus 284 ~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~-~~W~p~~~~~L~v~~~sG~~~v~ 362 (1265)
T KOG1920|consen 284 PFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL-LMWDPVTEKTLHVLRESGQRLVR 362 (1265)
T ss_pred CCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc-ccccCCCceeEEEEecCCcEEEE
Confidence 111222 5899999855554444 22234359999987753 222333221111 777775 33333356655554
Q ss_pred E
Q 000744 1271 L 1271 (1306)
Q Consensus 1271 d 1271 (1306)
+
T Consensus 363 ~ 363 (1265)
T KOG1920|consen 363 D 363 (1265)
T ss_pred E
Confidence 4
No 423
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=95.74 E-value=0.55 Score=56.65 Aligned_cols=147 Identities=16% Similarity=0.131 Sum_probs=88.4
Q ss_pred ccchHHHHHHHhcCCcHHHHHHHHHHHHHHhccCccccccccccCCchHHHHHHHhcCh----HHHHHHHhccCCCHHHH
Q 000744 533 PTIINGFAEILSASLSREVLRTSVYILSELMVADESVGDILTSVDSDFDCLAALLKNGL----GEAAVLIYQLRPAFAQL 608 (1306)
Q Consensus 533 ~~~I~~Lv~~L~~~~~~~~~e~Av~~L~~L~s~~~~~~~~I~~~~~~i~~Lv~lLk~g~----~~Aa~aL~~L~~~~~~i 608 (1306)
+.+++.|+..|....+.++...++.+|... ++ ..+++.|+..|.+.. ..|+.+| ..|
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~---~~---------~~~~~~L~~~L~d~~~~vr~aaa~AL-------g~i 113 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLAQ---ED---------ALDLRSVLAVLQAGPEGLCAGIQAAL-------GWL 113 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhcc---CC---------hHHHHHHHHHhcCCCHHHHHHHHHHH-------hcC
Confidence 456888888886654677777766666533 21 234788888887754 4555555 245
Q ss_pred hhCCchHHHHHHhhcCCccccchhcccCchHHHHHHHHHHHccCCCCCchhhhhHhhcCCCHHHHHhhc--CChhHHHHH
Q 000744 609 SAHEFIPSLVQLVLNKTEEFDELQFVMEPKDAAIEMLEQILMGGDKKSRSITALSLISANGIPALIKCL--DRVEVRRSI 686 (1306)
Q Consensus 609 ~~~g~i~~Lv~ll~~g~~~~~~~~~~~~~k~aa~~lL~~l~~~~~~~~~~~n~~~i~~~g~i~~Lv~~l--~~~~~~~~~ 686 (1306)
...++++.|+.+|.+.+... +.+++.++.. ......+.|+..| .+...+..|
T Consensus 114 ~~~~a~~~L~~~L~~~~p~v---------R~aal~al~~-----------------r~~~~~~~L~~~L~d~d~~Vra~A 167 (410)
T TIGR02270 114 GGRQAEPWLEPLLAASEPPG---------RAIGLAALGA-----------------HRHDPGPALEAALTHEDALVRAAA 167 (410)
T ss_pred CchHHHHHHHHHhcCCChHH---------HHHHHHHHHh-----------------hccChHHHHHHHhcCCCHHHHHHH
Confidence 56677888888887655222 1122233222 1122345677777 455556666
Q ss_pred HHHHHhhhhccchhHHHHHHhcccchhhhhhhcCCchhHhHHHHHHHHH
Q 000744 687 VSILLCCMHADKSCKTLIAKRIELSHVLDLFHDGNDSVRGICINFLSEL 735 (1306)
Q Consensus 687 ~~~L~~~~~~~~~~r~~i~~~~~~~~l~~ll~~g~~~~k~~a~~~L~~L 735 (1306)
+..|- .|.....++.|...+.+.++..|..|+..|..+
T Consensus 168 ~raLG-----------~l~~~~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 168 LRALG-----------ELPRRLSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred HHHHH-----------hhccccchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 66554 233344566677777777777788777777544
No 424
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.72 E-value=1.3 Score=48.50 Aligned_cols=107 Identities=18% Similarity=0.208 Sum_probs=70.4
Q ss_pred CEEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc-eeEEEeecCCCCeE
Q 000744 1047 GRVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEE-IHCLQVHNVKEAVH 1125 (1306)
Q Consensus 1047 d~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~-~~~i~~~~~~~~V~ 1125 (1306)
.+++.|+-.+.+.--|..+| ..+..- .-...|.+-+.- -|++++.|...|.+.+.+.++|+ ....... +.|.
T Consensus 24 T~v~igSHs~~~~avd~~sG--~~~We~-ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~---~~vk 96 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSG--NLIWEA-ILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL---ETVK 96 (354)
T ss_pred eEEEEecCCceEEEecCCCC--cEEeeh-hhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeeh---hhhc
Confidence 37888898999999999888 444332 112233333222 47789999999999999999983 1111111 1111
Q ss_pred EEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCCEEEEEECCCcEEEEECCCCceeEEe
Q 000744 1126 ELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGDKLYCGCSGYSIQEVDLGNLTSTTFY 1194 (1306)
Q Consensus 1126 sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~ 1194 (1306)
+- ..++++++.+++|+.|++.+..|.++..++...
T Consensus 97 ~~----------------------------------a~~d~~~glIycgshd~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 97 VR----------------------------------AQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKS 131 (354)
T ss_pred cc----------------------------------eEEcCCCceEEEecCCCcEEEecccccceEEec
Confidence 11 112344457999999999999999998888753
No 425
>PHA02713 hypothetical protein; Provisional
Probab=95.58 E-value=0.69 Score=58.53 Aligned_cols=98 Identities=7% Similarity=-0.018 Sum_probs=54.7
Q ss_pred CcEEEEECCCCceeEEecCcccccCCccEEEEEEeCCcEEEEEEecCC----CEEEEEECCC-C--ceEEEEecCCCEEE
Q 000744 1178 YSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLLFAGGSSVDG----TAGKVFSISS-K--TAVGSFTTGIDIQH 1250 (1306)
Q Consensus 1178 g~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~s~Dg----~~I~IWD~~t-~--~~l~~l~~~~~V~s 1250 (1306)
..+..||..+.+=...- .+.....-.+++..++..|+++|..+. ..+..||..+ . ..+..++......+
T Consensus 432 ~~ve~YDP~td~W~~v~----~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~ 507 (557)
T PHA02713 432 NKVIRYDTVNNIWETLP----NFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH 507 (557)
T ss_pred ceEEEECCCCCeEeecC----CCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccce
Confidence 35778888765432211 111111112355567888888763221 2478899886 3 33444443222333
Q ss_pred E-EEcCcEEEEEECCC--cEEEEECCCCeEEE
Q 000744 1251 L-AVNSDFIFTATKCG--TIEVWLKERVTRVA 1279 (1306)
Q Consensus 1251 l-a~spd~Lasgs~Dg--~I~IWd~~tg~~l~ 1279 (1306)
+ .+...+.++||.|| ++..||..+.+...
T Consensus 508 ~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~ 539 (557)
T PHA02713 508 TILHDNTIMMLHCYESYMLQDTFNVYTYEWNH 539 (557)
T ss_pred eEEECCEEEEEeeecceeehhhcCcccccccc
Confidence 3 34444778888888 78889988876543
No 426
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=0.0077 Score=69.11 Aligned_cols=47 Identities=19% Similarity=0.511 Sum_probs=39.9
Q ss_pred ccCcccccccCC--cE-EcCCCCcccHHHHHHHHHcCCCCCCCCCCccCC
Q 000744 344 FVCPITGQIFND--PV-TLETGQTYERKAIQEWLKRGNTTCPITRQPLCS 390 (1306)
Q Consensus 344 ~~CpIc~~l~~d--Pv-~~~cGhtfc~~cI~~~~~~~~~~CP~c~~~l~~ 390 (1306)
+.|-||+|-+.+ -+ +++|+|.|=..||..|+......||+|++....
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 699999998874 33 789999999999999999866779999986543
No 427
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.56 E-value=0.62 Score=45.00 Aligned_cols=88 Identities=17% Similarity=0.205 Sum_probs=60.9
Q ss_pred EEEEEECCCcEEEEECCCCceeEEecCcccccCCccEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEecCCCEE
Q 000744 1170 KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFTTGIDIQ 1249 (1306)
Q Consensus 1170 ~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~~~~V~ 1249 (1306)
.|++||.|..|++|+=. ..+..+. ....|.++.....+.|..+- .+| +|-+|+- .+.+..++....++
T Consensus 17 eLlvGs~D~~IRvf~~~--e~~~Ei~------e~~~v~~L~~~~~~~F~Y~l-~NG-TVGvY~~--~~RlWRiKSK~~~~ 84 (111)
T PF14783_consen 17 ELLVGSDDFEIRVFKGD--EIVAEIT------ETDKVTSLCSLGGGRFAYAL-ANG-TVGVYDR--SQRLWRIKSKNQVT 84 (111)
T ss_pred eEEEecCCcEEEEEeCC--cEEEEEe------cccceEEEEEcCCCEEEEEe-cCC-EEEEEeC--cceeeeeccCCCeE
Confidence 69999999999999743 4444332 22278888887777777665 355 9999975 33445555555577
Q ss_pred EEEEcC---c---EEEEEECCCcEEE
Q 000744 1250 HLAVNS---D---FIFTATKCGTIEV 1269 (1306)
Q Consensus 1250 sla~sp---d---~Lasgs~Dg~I~I 1269 (1306)
++++.. | -|++|-.+|.|-+
T Consensus 85 ~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 85 SMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred EEEEEcCCCCCceEEEEEecCCeEEe
Confidence 776542 2 7999999998753
No 428
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=95.55 E-value=0.2 Score=58.22 Aligned_cols=299 Identities=14% Similarity=0.117 Sum_probs=172.6
Q ss_pred HHHHHHHHHhhhcCCCcccccccccccchHHHHHHHhcCCcHHHHHHHHHHHHHHhccCccccccccccCCchHHHHHHH
Q 000744 508 TAVLAIARLWKESKGDPGVHAYLLKPTIINGFAEILSASLSREVLRTSVYILSELMVADESVGDILTSVDSDFDCLAALL 587 (1306)
Q Consensus 508 ~Av~~i~~L~~~~~~~~~~~~~i~~~~~I~~Lv~~L~~~~~~~~~e~Av~~L~~L~s~~~~~~~~I~~~~~~i~~Lv~lL 587 (1306)
.+...+...++..-.+..|+..-..++++++|+.+..+. +.++.+..-.+|.|++.-++++|..|-+ .|+-..++++|
T Consensus 61 ~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~-d~ev~~Q~~RaLgNiCydn~E~R~a~~~-lgGaqivid~L 138 (604)
T KOG4500|consen 61 FQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSP-DTEVHEQCFRALGNICYDNNENRAAFFN-LGGAQIVIDVL 138 (604)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCC-cccHHHHHHHHHhhhhccCchhHHHHHh-cCCceehHhhh
Confidence 334444444444433334444435678899999988887 9999999999999999999999999998 67767788888
Q ss_pred hcCh-----------HHHHHHHhccCC----CHHHHhhCCchHHHHHHhhcCCccccchhcccCchHHHHHHHHHHHccC
Q 000744 588 KNGL-----------GEAAVLIYQLRP----AFAQLSAHEFIPSLVQLVLNKTEEFDELQFVMEPKDAAIEMLEQILMGG 652 (1306)
Q Consensus 588 k~g~-----------~~Aa~aL~~L~~----~~~~i~~~g~i~~Lv~ll~~g~~~~~~~~~~~~~k~aa~~lL~~l~~~~ 652 (1306)
|.=. .-+-..|.|-.. -+++..++|++|.|+.++.-+-.... +-+.|+..|
T Consensus 139 ~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa--------------~~e~ll~~f 204 (604)
T KOG4500|consen 139 KPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAA--------------LTEKLLAPF 204 (604)
T ss_pred ccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHH--------------HHHHHHhcc
Confidence 7621 223344544433 67889999999999999877642211 112222111
Q ss_pred CCCCchhhhhHhhcC---------CCHHHHHhhc-CCh--hHHHHHHHHHHhhhhccchhHHHHHHhcccchhhhhhhc-
Q 000744 653 DKKSRSITALSLISA---------NGIPALIKCL-DRV--EVRRSIVSILLCCMHADKSCKTLIAKRIELSHVLDLFHD- 719 (1306)
Q Consensus 653 ~~~~~~~n~~~i~~~---------g~i~~Lv~~l-~~~--~~~~~~~~~L~~~~~~~~~~r~~i~~~~~~~~l~~ll~~- 719 (1306)
-|...++.+ .-+--|+++| ..+ +-++-...+|....+ ++.-.-.+++.|-+..+++|++.
T Consensus 205 ------~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~ae-nd~Vkl~la~~gl~e~~~~lv~~~ 277 (604)
T KOG4500|consen 205 ------FNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAE-NDLVKLSLAQNGLLEDSIDLVRNM 277 (604)
T ss_pred ------ccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhc-CcceeeehhhcchHHHHHHHHHhc
Confidence 122222222 1223355555 322 223444566654433 23334456788888889999998
Q ss_pred CCchhHhHHHHHHHHHHhcchhhhH-HHHHHHhhhcCCcchHHHHHHHhhcCCCcchhhHHHHHHhhhcccCCccccccH
Q 000744 720 GNDSVRGICINFLSELVLLNRRTFS-NQILQVIRDEGSFSTMHTFLVYLQMAPMEQQPATASLLLQLDLLVEPRKMSMYR 798 (1306)
Q Consensus 720 g~~~~k~~a~~~L~~L~~~~~~~~~-~~~l~~i~~~g~~~~m~~ll~~l~~~~~~~~~~~A~~l~~l~~l~~~~~~~~~r 798 (1306)
.+...|+.++..+-..+.+----.. ...++-+-..+- -+.-++.++++...+-....+..+++++--++. -.-...
T Consensus 278 k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~--~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~-ci~~v~ 354 (604)
T KOG4500|consen 278 KDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQ--FLDFLESWFRSDDSNLITMGSLAIGNFARRDDI-CIQLVQ 354 (604)
T ss_pred ccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcH--HHHHHHHHhcCCchhHHHHHHHHHHhhhccchH-HHHHHH
Confidence 7777788888877433221100000 001122222221 233455566654444444444445555432222 122346
Q ss_pred HHHHHHHHHHHhc-CCCc---hHHHHHHHHHHhcccee
Q 000744 799 EEAVEALIEALRR-KDFP---NSQMMALDALLSLTGRF 832 (1306)
Q Consensus 799 eeai~~l~~~l~~-~~~~---~~q~~aa~~l~~l~g~~ 832 (1306)
.+-++-|+++|.. .+.+ ..|-.+..||.||.=-.
T Consensus 355 ~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv 392 (604)
T KOG4500|consen 355 KDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPV 392 (604)
T ss_pred HHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccC
Confidence 7777888888877 3322 45666779999986443
No 429
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.53 E-value=4.8 Score=45.20 Aligned_cols=188 Identities=13% Similarity=0.076 Sum_probs=110.1
Q ss_pred ceEEEEcccCc--cEEEEEEcCCCCEEEEEeCCC--cEEEEEcCCCceeEEEeecCCCCeEEEEe-CCcEEEEEcCCCeE
Q 000744 1069 RLIQEVREHTR--AVTCLYVPSSGDKLYSGSLDK--TIRVWSIKPEEIHCLQVHNVKEAVHELTA-NAEIACFVSPATGV 1143 (1306)
Q Consensus 1069 ~~i~~l~~H~~--~V~sl~fspdg~~L~Sgs~Dg--tI~VWdi~~~~~~~i~~~~~~~~V~sl~~-~~~~v~~s~dg~~I 1143 (1306)
+.+.++. |.. -...+.|..+|.++-|.+.-| .|+.+|+.+++......++..---..++. ++.+....-.....
T Consensus 34 ~vv~~yp-Hd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~ 112 (264)
T PF05096_consen 34 EVVETYP-HDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTG 112 (264)
T ss_dssp EEEEEEE---TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEE
T ss_pred EEEEECC-CCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeE
Confidence 3445553 332 345677767888888888776 78999999986443333332222233333 44555555555555
Q ss_pred EEEEecCCEE--EeccCCCeEEEEEeCCEEEEEECCCcEEEEECCCCceeEEecCcccccCCc--cEEEEEEeCCcEEEE
Q 000744 1144 KVYNWSGAIK--HINFNKHVKSLVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQ--TIHSLHMHNGLLFAG 1219 (1306)
Q Consensus 1144 ~i~~~~~~~~--l~~~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~--~I~sl~~s~~~~lla 1219 (1306)
.+++.+.-.. .+...+.=..++..++.|+.+.....++.+|..+.+....+.... .+.. .++-+.+.++..++=
T Consensus 113 f~yd~~tl~~~~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~--~g~pv~~LNELE~i~G~IyAN 190 (264)
T PF05096_consen 113 FVYDPNTLKKIGTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTD--NGRPVSNLNELEYINGKIYAN 190 (264)
T ss_dssp EEEETTTTEEEEEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EE--TTEE---EEEEEEETTEEEEE
T ss_pred EEEccccceEEEEEecCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEE--CCEECCCcEeEEEEcCEEEEE
Confidence 5666553222 223344556666777788888888899999999887766554321 1222 667788887666554
Q ss_pred EEecCCCEEEEEECCCCceEEEEec----------C------CCEEEEEEcCc---EEEEE
Q 000744 1220 GSSVDGTAGKVFSISSKTAVGSFTT----------G------IDIQHLAVNSD---FIFTA 1261 (1306)
Q Consensus 1220 s~s~Dg~~I~IWD~~t~~~l~~l~~----------~------~~V~sla~spd---~Lasg 1261 (1306)
.- ..+ .|...|..+|+++..+.- . .-.+.||++|+ +++||
T Consensus 191 VW-~td-~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 191 VW-QTD-RIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp ET-TSS-EEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred eC-CCC-eEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 43 334 799999999999888740 1 12799999886 66666
No 430
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=95.51 E-value=1.3 Score=52.77 Aligned_cols=236 Identities=11% Similarity=0.069 Sum_probs=127.6
Q ss_pred CCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEE------
Q 000744 1055 DGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELT------ 1128 (1306)
Q Consensus 1055 Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~------ 1128 (1306)
.+.+.+||+.++. +..+......+....|||+|+.++-.. ++.|.+++..++....+...........+.
T Consensus 22 ~~~y~i~d~~~~~---~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeE 97 (353)
T PF00930_consen 22 KGDYYIYDIETGE---ITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEE 97 (353)
T ss_dssp EEEEEEEETTTTE---EEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHH
T ss_pred ceeEEEEecCCCc---eEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccc
Confidence 4678999999973 233322356788899999999988876 578999998877433332222111112222
Q ss_pred --e-CCcEEEEEcCCCeEEEEEecCC-EE---Eec--cCC----CeEEEEEeCCEEEEEECC--CcEEEEECCCCceeEE
Q 000744 1129 --A-NAEIACFVSPATGVKVYNWSGA-IK---HIN--FNK----HVKSLVMTGDKLYCGCSG--YSIQEVDLGNLTSTTF 1193 (1306)
Q Consensus 1129 --~-~~~~v~~s~dg~~I~i~~~~~~-~~---l~~--~~~----~V~sl~~s~d~L~sgs~D--g~I~iwDl~~~~~~~~ 1193 (1306)
| ....+.|+|||+.|..+..+.. ++ +.. ... .+..+.+- ..|..+ -.+.++|+.+++....
T Consensus 98 Ev~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YP----k~G~~np~v~l~v~~~~~~~~~~~ 173 (353)
T PF00930_consen 98 EVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYP----KAGDPNPRVSLFVVDLASGKTTEL 173 (353)
T ss_dssp HTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE------BTTS---EEEEEEEESSSTCCCEE
T ss_pred cccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccC----CCCCcCCceEEEEEECCCCcEEEe
Confidence 2 3456779999999999888832 22 221 111 23344332 111222 2366789988876432
Q ss_pred ecCcccccCCc-cEEEEEEeCCcE--EEEEEecCCC--EEEEEECCCCceEEEEe--cCCCE---EEEEEc-Cc---EEE
Q 000744 1194 YAGTKKLLGKQ-TIHSLHMHNGLL--FAGGSSVDGT--AGKVFSISSKTAVGSFT--TGIDI---QHLAVN-SD---FIF 1259 (1306)
Q Consensus 1194 ~~~~~~l~gh~-~I~sl~~s~~~~--llas~s~Dg~--~I~IWD~~t~~~l~~l~--~~~~V---~sla~s-pd---~La 1259 (1306)
-.. ....... .+..+.|.+++. ++...+.+.+ .+.++|..++.+...+. ....| ....|. ++ ++.
T Consensus 174 ~~~-~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~ 252 (353)
T PF00930_consen 174 DPP-NSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLW 252 (353)
T ss_dssp ----HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEE
T ss_pred eec-cccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEE
Confidence 111 1112233 888999985554 4444444443 45667777766544443 23332 244443 44 666
Q ss_pred EEECCCcEEEE--ECCCCeEEEEEecccCCCCCCCeEE-EEEcCCCCcc
Q 000744 1260 TATKCGTIEVW--LKERVTRVASVKANNSGGGHAKITC-LGTGVDGHPY 1305 (1306)
Q Consensus 1260 sgs~Dg~I~IW--d~~tg~~l~~l~~~~~~~~~~~V~s-lafSpdg~~L 1305 (1306)
....||.-+|| +..++. ...+.. +.-.|+. +.|+++++.|
T Consensus 253 ~s~~~G~~hly~~~~~~~~-~~~lT~-----G~~~V~~i~~~d~~~~~i 295 (353)
T PF00930_consen 253 ISERDGYRHLYLYDLDGGK-PRQLTS-----GDWEVTSILGWDEDNNRI 295 (353)
T ss_dssp EEETTSSEEEEEEETTSSE-EEESS------SSS-EEEEEEEECTSSEE
T ss_pred EEEcCCCcEEEEEcccccc-eecccc-----CceeecccceEcCCCCEE
Confidence 66688866655 555444 334432 3346755 6788887754
No 431
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.44 E-value=0.92 Score=57.42 Aligned_cols=226 Identities=12% Similarity=0.083 Sum_probs=123.9
Q ss_pred cEEEEEeCC------CcEEEEeCCCceEEc---ccCCCCEEEEEEeCC-EEEEEECC------CcEEEEeCCCCccceEE
Q 000744 1009 KALMNLSSV------NATELWHCNEVTELD---SSTNGEVLSLIHLKG-RVLSSHSD------GTIKMWDSGKRVLRLIQ 1072 (1306)
Q Consensus 1009 ~~Lasgs~D------g~I~IWd~~~~~~i~---~~H~~~V~sl~fspd-~LaSgs~D------g~I~vWd~~t~~~~~i~ 1072 (1306)
.+++.||.+ ..+..||..+..-.. ..+...-.+++..++ ..++||.| .++..||..+++|..+.
T Consensus 286 ~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a 365 (571)
T KOG4441|consen 286 KLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVA 365 (571)
T ss_pred eEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccC
Confidence 567777776 367788877532221 123334556666666 77788888 45778888888655544
Q ss_pred EEcccCccEEEEEEcCCCCEEEEEeCCCc-----EEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEE
Q 000744 1073 EVREHTRAVTCLYVPSSGDKLYSGSLDKT-----IRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYN 1147 (1306)
Q Consensus 1073 ~l~~H~~~V~sl~fspdg~~L~Sgs~Dgt-----I~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~ 1147 (1306)
.+.......-... -+|...++||.||. |-.||..+.++..+.... ....... ...-+
T Consensus 366 ~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~--~~r~~~g------v~~~~-------- 427 (571)
T KOG4441|consen 366 PMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPML--TRRSGHG------VAVLG-------- 427 (571)
T ss_pred CccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCCcccccCCCC--cceeeeE------EEEEC--------
Confidence 4433322222222 26888889999864 667777776433332221 1111111 01111
Q ss_pred ecCCEEEeccCCCeEEEEEeCCEEEEEECC------CcEEEEECCCCceeEEecCcccccCCccEEEEEEeCCcEEEEEE
Q 000744 1148 WSGAIKHINFNKHVKSLVMTGDKLYCGCSG------YSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLLFAGGS 1221 (1306)
Q Consensus 1148 ~~~~~~l~~~~~~V~sl~~s~d~L~sgs~D------g~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~ 1221 (1306)
+...++|+.| .++..||..+++-...- .+.....-..++.-++.+|+++|
T Consensus 428 --------------------g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~----~M~~~R~~~g~a~~~~~iYvvGG 483 (571)
T KOG4441|consen 428 --------------------GKLYIIGGGDGSSNCLNSVECYDPETNTWTLIA----PMNTRRSGFGVAVLNGKIYVVGG 483 (571)
T ss_pred --------------------CEEEEEcCcCCCccccceEEEEcCCCCceeecC----CcccccccceEEEECCEEEEECC
Confidence 2234455533 35678888776533311 11111122346666888888887
Q ss_pred ecCC----CEEEEEECCCCceEE--EEecCCC-EEEEEEcCcEEEEEECCC-----cEEEEECCCCeE
Q 000744 1222 SVDG----TAGKVFSISSKTAVG--SFTTGID-IQHLAVNSDFIFTATKCG-----TIEVWLKERVTR 1277 (1306)
Q Consensus 1222 s~Dg----~~I~IWD~~t~~~l~--~l~~~~~-V~sla~spd~Lasgs~Dg-----~I~IWd~~tg~~ 1277 (1306)
. |+ .+|..||..+.+-.. .+..... +..+.+.....+.|+.|| +|..||..+.+.
T Consensus 484 ~-~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W 550 (571)
T KOG4441|consen 484 F-DGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTW 550 (571)
T ss_pred c-cCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCccccceeEEcCCCCCce
Confidence 4 43 258889987765433 2333222 333334444777788775 677888877654
No 432
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.35 E-value=3.9 Score=49.71 Aligned_cols=191 Identities=10% Similarity=0.062 Sum_probs=99.9
Q ss_pred cEEEEEcCCCceeEEEeecCCCCeEEEEe--CCcEEEEEcCCCeEEEEEecCCEEEecc----------CCCeEEEEEeC
Q 000744 1101 TIRVWSIKPEEIHCLQVHNVKEAVHELTA--NAEIACFVSPATGVKVYNWSGAIKHINF----------NKHVKSLVMTG 1168 (1306)
Q Consensus 1101 tI~VWdi~~~~~~~i~~~~~~~~V~sl~~--~~~~v~~s~dg~~I~i~~~~~~~~l~~~----------~~~V~sl~~s~ 1168 (1306)
.|.||+.....+..+.- +. +.+.++.| +..++++..+|. +.++++.|.. .... ...+....+.+
T Consensus 62 ~I~iys~sG~ll~~i~w-~~-~~iv~~~wt~~e~LvvV~~dG~-v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~ 137 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPW-DS-GRIVGMGWTDDEELVVVQSDGT-VRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYK 137 (410)
T ss_pred EEEEECCCCCEeEEEEE-CC-CCEEEEEECCCCeEEEEEcCCE-EEEEeCCCce-eechhhhccccCcccccccccccCC
Confidence 36666665543222222 22 67888888 667888888887 7888887776 2211 11122233333
Q ss_pred CEEEEEECCCcEEEEECCCCc-eeEEecCcccc-c-CCc--cEEE-EEEeCCcEEEEEEecCCCEEEEEECCCCceEEEE
Q 000744 1169 DKLYCGCSGYSIQEVDLGNLT-STTFYAGTKKL-L-GKQ--TIHS-LHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSF 1242 (1306)
Q Consensus 1169 d~L~sgs~Dg~I~iwDl~~~~-~~~~~~~~~~l-~-gh~--~I~s-l~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l 1242 (1306)
+.++.-..++.+.+.+-.... ....+...... . .+. .... ..++.+..+.+....++ .+.+.+....+. +
T Consensus 138 ~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~-~i~~i~~~~~~~---i 213 (410)
T PF04841_consen 138 NGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGE-TIYIIDENSFKQ---I 213 (410)
T ss_pred CCEEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCC-EEEEEEcccccc---c
Confidence 445544556665554322221 11111100000 0 011 1111 12332222222222233 566444333211 3
Q ss_pred ecCCCEEEEEEcCc--EEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCCC
Q 000744 1243 TTGIDIQHLAVNSD--FIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDGH 1303 (1306)
Q Consensus 1243 ~~~~~V~sla~spd--~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~ 1303 (1306)
...+++..|++||+ +++.-..+|.+.|....-.+.+..+.. + .......+.|.-+.-
T Consensus 214 ~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~---~-~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 214 DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDT---D-SKSPPKQMAWCGNDA 272 (410)
T ss_pred cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeec---C-cCCCCcEEEEECCCc
Confidence 34568999999998 888888999999998776667777764 2 224566777776543
No 433
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=0.021 Score=72.95 Aligned_cols=72 Identities=29% Similarity=0.539 Sum_probs=66.3
Q ss_pred CCCCCcccCcccccccCCcEEcC-CCCcccHHHHHHHHHcCCCCCCCCCCccCCCCCCCccHHHHHHHHHHHHHC
Q 000744 338 SRPPKDFVCPITGQIFNDPVTLE-TGQTYERKAIQEWLKRGNTTCPITRQPLCSNSLPKTNYVLKRLITSWKEQY 411 (1306)
Q Consensus 338 ~~~~~~~~CpIc~~l~~dPv~~~-cGhtfc~~cI~~~~~~~~~~CP~c~~~l~~~~l~~~N~~L~~li~~~~~~~ 411 (1306)
..+|++|.=|+..-+|.|||+++ .|++-||.-|.+++-. ..+-|-||.+|+...+. ||..|+..|+.|..+.
T Consensus 865 ~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs-~~tdPFNR~pLt~d~v~-pn~eLK~kI~~~~~ek 937 (943)
T KOG2042|consen 865 GDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLS-DCTDPFNREPLTEDMVS-PNEELKAKIRCWIKEK 937 (943)
T ss_pred ccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhc-CCCCccccccCchhhcC-CCHHHHHHHHHHHHHh
Confidence 45999999999999999999998 9999999999999987 55789999999999996 9999999999997754
No 434
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=95.27 E-value=0.017 Score=56.65 Aligned_cols=123 Identities=15% Similarity=0.165 Sum_probs=96.4
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHhhhcCCCcccccccccccchHHHHHHHhcCCcHHHHHHHHHHHHHHhccCcccccc
Q 000744 493 YVTCLCTSENLQECETAVLAIARLWKESKGDPGVHAYLLKPTIINGFAEILSASLSREVLRTSVYILSELMVADESVGDI 572 (1306)
Q Consensus 493 ~l~~Ll~s~~~~~~e~Av~~i~~L~~~~~~~~~~~~~i~~~~~I~~Lv~~L~~~~~~~~~e~Av~~L~~L~s~~~~~~~~ 572 (1306)
++...-...+.+.+|..+.-+.|++-+..| -..+-+..+++-+|..|... +....|.++..|.|| ..|+.|++-
T Consensus 21 LV~efq~tt~~eakeqv~ANLANFAYDP~N----ys~Lrql~vLdlFvdsl~e~-ne~LvefgIgglCNl-C~d~~n~~~ 94 (173)
T KOG4646|consen 21 LVDEFQTTTNIEAKEQVTANLANFAYDPIN----YSHLRQLDVLDLFVDSLEEQ-NELLVEFGIGGLCNL-CLDKTNAKF 94 (173)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhccCcch----HHHHHHhhHHHHHHHHhhcc-cHHHHHHhHHHHHhh-ccChHHHHH
Confidence 444445566788899999999999986653 35777889999999999999 889999999999999 778889999
Q ss_pred ccccCCchHHHHHHHhcCh----HHHHHHHhccCC-CHHHHhhCCchHHHHHHhhc
Q 000744 573 LTSVDSDFDCLAALLKNGL----GEAAVLIYQLRP-AFAQLSAHEFIPSLVQLVLN 623 (1306)
Q Consensus 573 I~~~~~~i~~Lv~lLk~g~----~~Aa~aL~~L~~-~~~~i~~~g~i~~Lv~ll~~ 623 (1306)
|.. .+++|.++..|.+.. ..|+.+|+.|++ ++..--+ =.-|+.|+.+..
T Consensus 95 I~e-a~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~e-ll~p~Vv~~v~r 148 (173)
T KOG4646|consen 95 IRE-ALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDE-LLSPAVVRTVQR 148 (173)
T ss_pred HHH-hcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHH-hccHHHHHHHHH
Confidence 997 899999999998865 679999999998 4333222 123556666554
No 435
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.24 E-value=0.63 Score=56.73 Aligned_cols=166 Identities=13% Similarity=0.121 Sum_probs=88.2
Q ss_pred ccEEEEEeCCCcEEEE-eCCCce--EEcccCCCCEEEEEEeCCEEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEE
Q 000744 1008 QKALMNLSSVNATELW-HCNEVT--ELDSSTNGEVLSLIHLKGRVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCL 1084 (1306)
Q Consensus 1008 ~~~Lasgs~Dg~I~IW-d~~~~~--~i~~~H~~~V~sl~fspd~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl 1084 (1306)
...+|+-...++|+|+ +.+... .+... ..+..|-. +..|...+ ++.|.+||+.++ +.+..+... +|..|
T Consensus 79 ~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~--~~~~~If~-G~LL~~~~-~~~i~~yDw~~~--~~i~~i~v~--~vk~V 150 (443)
T PF04053_consen 79 RNRYAVLESSSTIKIYKNFKNEVVKSIKLP--FSVEKIFG-GNLLGVKS-SDFICFYDWETG--KLIRRIDVS--AVKYV 150 (443)
T ss_dssp SSEEEEE-TTS-EEEEETTEE-TT-----S--S-EEEEE--SSSEEEEE-TTEEEEE-TTT----EEEEESS---E-EEE
T ss_pred CccEEEEECCCeEEEEEcCccccceEEcCC--cccceEEc-CcEEEEEC-CCCEEEEEhhHc--ceeeEEecC--CCcEE
Confidence 3556666667778885 332211 22222 12333333 33444444 448999999999 888888643 48999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCC------------ceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCE
Q 000744 1085 YVPSSGDKLYSGSLDKTIRVWSIKPE------------EIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAI 1152 (1306)
Q Consensus 1085 ~fspdg~~L~Sgs~DgtI~VWdi~~~------------~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~ 1152 (1306)
.|+++|++++-.+.| ++.|++.+.. ....+... ...|.+..|.+..+.++..+ .++. -..|..
T Consensus 151 ~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~--~~~IkSg~W~~d~fiYtT~~-~lkY-l~~Ge~ 225 (443)
T PF04053_consen 151 IWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEI--SERIKSGCWVEDCFIYTTSN-HLKY-LVNGET 225 (443)
T ss_dssp EE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE---S--SEEEEETTEEEEE-TT-EEEE-EETTEE
T ss_pred EEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEe--cceeEEEEEEcCEEEEEcCC-eEEE-EEcCCc
Confidence 999999999988865 6788876654 23333332 37899999855566666666 5666 555555
Q ss_pred EEecc-CCCeEEEEEeC--CEEEEEECCCcEEEEECC
Q 000744 1153 KHINF-NKHVKSLVMTG--DKLYCGCSGYSIQEVDLG 1186 (1306)
Q Consensus 1153 ~l~~~-~~~V~sl~~s~--d~L~sgs~Dg~I~iwDl~ 1186 (1306)
-++.| ..++.=+.+.+ +.++....|+.+..+.+.
T Consensus 226 ~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 226 GIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp EEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred ceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 54444 44555556666 677777777777777654
No 436
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.22 E-value=0.013 Score=64.30 Aligned_cols=47 Identities=21% Similarity=0.462 Sum_probs=38.5
Q ss_pred ccCcccccccC--Cc-EEcCCCCcccHHHHHHHHHcCCCCCCCCCCccCC
Q 000744 344 FVCPITGQIFN--DP-VTLETGQTYERKAIQEWLKRGNTTCPITRQPLCS 390 (1306)
Q Consensus 344 ~~CpIc~~l~~--dP-v~~~cGhtfc~~cI~~~~~~~~~~CP~c~~~l~~ 390 (1306)
.-|.||++-|. |- ++++|.|.|=..|+.+|+..-...||+||.++++
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 57999998664 33 3789999999999999998546679999987653
No 437
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=95.15 E-value=2.1 Score=51.63 Aligned_cols=189 Identities=15% Similarity=0.123 Sum_probs=94.5
Q ss_pred cCCCCEEEEEEeC-CEEEEEECCCcEEEEeCCCCccceEEE--Ecc------cCccEEEEEEcC-----CC---CEEEEE
Q 000744 1034 STNGEVLSLIHLK-GRVLSSHSDGTIKMWDSGKRVLRLIQE--VRE------HTRAVTCLYVPS-----SG---DKLYSG 1096 (1306)
Q Consensus 1034 ~H~~~V~sl~fsp-d~LaSgs~Dg~I~vWd~~t~~~~~i~~--l~~------H~~~V~sl~fsp-----dg---~~L~Sg 1096 (1306)
...++|++++.|. .+++.|..+|.+.|.|++.. ..+.. +.. ....|+++.|+- |+ -.+++|
T Consensus 84 ~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGP--avI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 84 AKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGP--AVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp --S-SEEEEEE-BTSEEEEEETTSEEEEEETTTT--EEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred ccCCcEeEEecCCCcEEEEEecCCcEEEEECCCC--eEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 3478999999987 69999999999999999877 44443 222 234688888862 33 478899
Q ss_pred eCCCcEEEEEcCC-C-ce---eEEEee-cCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCCE
Q 000744 1097 SLDKTIRVWSIKP-E-EI---HCLQVH-NVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGDK 1170 (1306)
Q Consensus 1097 s~DgtI~VWdi~~-~-~~---~~i~~~-~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~ 1170 (1306)
+..|.+.+|.+.. . .. ...... .+.++|..|. .+..++..-....... ..-......+ ..
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~------~i~~~~G~~a~At~~~-~~~l~~g~~i-------~g 227 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSII------PINADTGESALATISA-MQGLSKGISI-------PG 227 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEE------EEETTT--B-B-BHHH-HHGGGGT-----------E
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEE------EEECCCCCcccCchhH-hhccccCCCc-------Cc
Confidence 9999999998752 1 11 111111 2334444443 1211111000000000 0000001111 13
Q ss_pred EEEEECCCcEEEEECCCCceeEEecCcccccCCccEEEEEE-----eCCcEEEEEEecCCCEEEEEECCCCceEEEEec
Q 000744 1171 LYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHM-----HNGLLFAGGSSVDGTAGKVFSISSKTAVGSFTT 1244 (1306)
Q Consensus 1171 L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~-----s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~ 1244 (1306)
++..+.+..|+++...+.+..... +..+.....+.+ ...+..+++-..+| .|++|.+..-+.+..+.-
T Consensus 228 ~vVvvSe~~irv~~~~~~k~~~K~-----~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G-~i~i~SLP~Lkei~~~~l 300 (395)
T PF08596_consen 228 YVVVVSESDIRVFKPPKSKGAHKS-----FDDPFLCSSASVVPTISRNGGYCLVCLFNNG-SIRIYSLPSLKEIKSVSL 300 (395)
T ss_dssp EEEEE-SSEEEEE-TT---EEEEE------SS-EEEEEEEEEEEE-EEEEEEEEEEETTS-EEEEEETTT--EEEEEE-
T ss_pred EEEEEcccceEEEeCCCCccccee-----eccccccceEEEEeecccCCceEEEEEECCC-cEEEEECCCchHhhcccC
Confidence 455566888999999887765532 211112333333 23455555555677 899999999888777763
No 438
>PF05536 Neurochondrin: Neurochondrin
Probab=95.06 E-value=0.29 Score=61.24 Aligned_cols=146 Identities=16% Similarity=0.210 Sum_probs=104.9
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHhhhcCCCcccccccccccchHHHHHHHhcCC------cHHHHHHHHHHHHHHhccCcc
Q 000744 495 TCLCTSENLQECETAVLAIARLWKESKGDPGVHAYLLKPTIINGFAEILSASL------SREVLRTSVYILSELMVADES 568 (1306)
Q Consensus 495 ~~Ll~s~~~~~~e~Av~~i~~L~~~~~~~~~~~~~i~~~~~I~~Lv~~L~~~~------~~~~~e~Av~~L~~L~s~~~~ 568 (1306)
..+|++.+.+++-.++.-+.++.+..+.+...+..|-++-+.+-|-++|+++. ...-+.-|+++|..++. +++
T Consensus 11 ~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~-~~~ 89 (543)
T PF05536_consen 11 LSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR-DPE 89 (543)
T ss_pred HHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC-Chh
Confidence 34677777555555677777777765544444445667666777888888843 24568899999999955 543
Q ss_pred ccccccccCCchHHHHHHHhcCh-----HHHHHHHhccCC---CHHHHhhCCchHHHHHHhhcCCccccchhcccCchHH
Q 000744 569 VGDILTSVDSDFDCLAALLKNGL-----GEAAVLIYQLRP---AFAQLSAHEFIPSLVQLVLNKTEEFDELQFVMEPKDA 640 (1306)
Q Consensus 569 ~~~~I~~~~~~i~~Lv~lLk~g~-----~~Aa~aL~~L~~---~~~~i~~~g~i~~Lv~ll~~g~~~~~~~~~~~~~k~a 640 (1306)
.... -+.-+.||.|++++.++. .+|...|+.+.. .+..+.+.|+||.|++.+.++... .+-
T Consensus 90 ~a~~-~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~~~~----------~E~ 158 (543)
T PF05536_consen 90 LASS-PQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQSFQ----------MEI 158 (543)
T ss_pred hhcC-HHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhCcch----------HHH
Confidence 3211 123357999999998754 589999999966 888899999999999999995422 457
Q ss_pred HHHHHHHHHccC
Q 000744 641 AIEMLEQILMGG 652 (1306)
Q Consensus 641 a~~lL~~l~~~~ 652 (1306)
|..+|..++...
T Consensus 159 Al~lL~~Lls~~ 170 (543)
T PF05536_consen 159 ALNLLLNLLSRL 170 (543)
T ss_pred HHHHHHHHHHhc
Confidence 888888887665
No 439
>PF05536 Neurochondrin: Neurochondrin
Probab=95.04 E-value=0.27 Score=61.64 Aligned_cols=186 Identities=17% Similarity=0.207 Sum_probs=125.1
Q ss_pred cchHHHHHHHhcCCcHHHHHHHHHHHHHHhccCccc---cccccccCCchHHHHHHHhcCh----------HH-HHHHHh
Q 000744 534 TIINGFAEILSASLSREVLRTSVYILSELMVADESV---GDILTSVDSDFDCLAALLKNGL----------GE-AAVLIY 599 (1306)
Q Consensus 534 ~~I~~Lv~~L~~~~~~~~~e~Av~~L~~L~s~~~~~---~~~I~~~~~~i~~Lv~lLk~g~----------~~-Aa~aL~ 599 (1306)
..++..+.+|++. +++.|=.+...+..++..++.+ +++|-+ +-+..-|-+||++|. .+ |+..|.
T Consensus 5 ~~l~~c~~lL~~~-~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~-aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~ 82 (543)
T PF05536_consen 5 ASLEKCLSLLKSA-DDTERFAGLLLVTKLLDADDEDSQTRRRVFE-AIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLA 82 (543)
T ss_pred HHHHHHHHHhccC-CcHHHHHHHHHHHHcCCCchhhHHHHHHHHH-hcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHH
Confidence 4477788888888 5888888898888887766633 345665 555789999999953 33 444444
Q ss_pred ccCCCHHHHhh----CCchHHHHHHhhcCCccccchhcccCchHHHHHHHHHHHccCCCCCchhhhhHhhcCCCHHHHHh
Q 000744 600 QLRPAFAQLSA----HEFIPSLVQLVLNKTEEFDELQFVMEPKDAAIEMLEQILMGGDKKSRSITALSLISANGIPALIK 675 (1306)
Q Consensus 600 ~L~~~~~~i~~----~g~i~~Lv~ll~~g~~~~~~~~~~~~~k~aa~~lL~~l~~~~~~~~~~~n~~~i~~~g~i~~Lv~ 675 (1306)
.++. .+++.+ .+-||.|++++.++++ ..--+.|...|..++.+ ++.+.++++.|+|+.|++
T Consensus 83 ~f~~-~~~~a~~~~~~~~IP~Lle~l~~~s~--------~~~v~dalqcL~~Ias~------~~G~~aLl~~g~v~~L~e 147 (543)
T PF05536_consen 83 AFCR-DPELASSPQMVSRIPLLLEILSSSSD--------LETVDDALQCLLAIASS------PEGAKALLESGAVPALCE 147 (543)
T ss_pred HHcC-ChhhhcCHHHHHHHHHHHHHHHcCCc--------hhHHHHHHHHHHHHHcC------cHhHHHHHhcCCHHHHHH
Confidence 4454 333322 4789999999999874 11234677777777644 599999999999999999
Q ss_pred hc-CChhHHHHHHHHHHhhhhccchhHHHHHH-h----cccchhhhhhhcCCchhHhHHHHHHHHHHhc
Q 000744 676 CL-DRVEVRRSIVSILLCCMHADKSCKTLIAK-R----IELSHVLDLFHDGNDSVRGICINFLSELVLL 738 (1306)
Q Consensus 676 ~l-~~~~~~~~~~~~L~~~~~~~~~~r~~i~~-~----~~~~~l~~ll~~g~~~~k~~a~~~L~~L~~~ 738 (1306)
.+ ........++.+|.+++...+. ..+.. . .-++.+-..+.......|.....+|..++..
T Consensus 148 i~~~~~~~~E~Al~lL~~Lls~~~~--~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~ 214 (543)
T PF05536_consen 148 IIPNQSFQMEIALNLLLNLLSRLGQ--KSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPR 214 (543)
T ss_pred HHHhCcchHHHHHHHHHHHHHhcch--hhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCc
Confidence 99 6666677788888876554331 11111 1 1223344455556666677777777777644
No 440
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=95.00 E-value=0.36 Score=62.03 Aligned_cols=142 Identities=11% Similarity=0.105 Sum_probs=88.9
Q ss_pred EEEEECCCcEEEEeCCCCccceEEEEcccCcc-EEEEEEcC-----CCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCC
Q 000744 1049 VLSSHSDGTIKMWDSGKRVLRLIQEVREHTRA-VTCLYVPS-----SGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKE 1122 (1306)
Q Consensus 1049 LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~-V~sl~fsp-----dg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~ 1122 (1306)
|........++-.|++.| +.+..+..|... |..++=.. ++...+.|-.++.+.-||.+-...+++....
T Consensus 497 l~~~~~~~~ly~mDLe~G--KVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~--- 571 (794)
T PF08553_consen 497 LLDPNNPNKLYKMDLERG--KVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS--- 571 (794)
T ss_pred eecCCCCCceEEEecCCC--cEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc---
Confidence 344445678999999999 889999887754 66554211 2345677888889999999864211111100
Q ss_pred CeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeC-CEEEEEECCCcEEEEECCCCceeEEecCccccc
Q 000744 1123 AVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTG-DKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLL 1201 (1306)
Q Consensus 1123 ~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~-d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~ 1201 (1306)
+.+......+|++-++ ++|++|+.+|.||+||- .|+.-+ ..++
T Consensus 572 ------------------------------k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AK-----T~lp 615 (794)
T PF08553_consen 572 ------------------------------KQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAK-----TALP 615 (794)
T ss_pred ------------------------------cccccCCCceEEEecCCceEEEEeCCCcEEeecc-cchhhh-----hcCC
Confidence 0011223344555553 37999999999999994 332221 2344
Q ss_pred CCc-cEEEEEEeCCcEEEEEEecCCCEEEEEEC
Q 000744 1202 GKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSI 1233 (1306)
Q Consensus 1202 gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~ 1233 (1306)
+-. ||..|.++.+|.++++.+ +. .+.+++.
T Consensus 616 ~lG~pI~~iDvt~DGkwilaTc-~t-yLlLi~t 646 (794)
T PF08553_consen 616 GLGDPIIGIDVTADGKWILATC-KT-YLLLIDT 646 (794)
T ss_pred CCCCCeeEEEecCCCcEEEEee-cc-eEEEEEE
Confidence 544 999999995555554443 54 7888886
No 441
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.99 E-value=0.02 Score=64.77 Aligned_cols=66 Identities=26% Similarity=0.523 Sum_probs=48.8
Q ss_pred CCCcccCcccccccCC--cE--EcCCCCcccHHHHHHHHHcCCCCCCCCCCccCCCCCCCccH---HHHHHHHHH
Q 000744 340 PPKDFVCPITGQIFND--PV--TLETGQTYERKAIQEWLKRGNTTCPITRQPLCSNSLPKTNY---VLKRLITSW 407 (1306)
Q Consensus 340 ~~~~~~CpIc~~l~~d--Pv--~~~cGhtfc~~cI~~~~~~~~~~CP~c~~~l~~~~l~~~N~---~L~~li~~~ 407 (1306)
-...|.|||+...|.. +. +.+|||.|+..|+.+.- ....||+|+.++...+++..|. .+..+.+.+
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI~Lnp~~ee~~~l~~~~ 182 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDIIPLNPPEEELEKLRERM 182 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEEEecCCccHHHHHHHHH
Confidence 4578999999999954 23 44899999999999984 3456999999999887653342 344444444
No 442
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.91 E-value=0.12 Score=60.27 Aligned_cols=195 Identities=15% Similarity=0.234 Sum_probs=115.5
Q ss_pred cchHHHHHHHhcC-CcHHHHHHHHHHHHHHhccCcccccccccc-----CCchHHHHHHHhcCh----HHHHHHHhccCC
Q 000744 534 TIINGFAEILSAS-LSREVLRTSVYILSELMVADESVGDILTSV-----DSDFDCLAALLKNGL----GEAAVLIYQLRP 603 (1306)
Q Consensus 534 ~~I~~Lv~~L~~~-~~~~~~e~Av~~L~~L~s~~~~~~~~I~~~-----~~~i~~Lv~lLk~g~----~~Aa~aL~~L~~ 603 (1306)
.....++.+|..- .+.++.+.....+..|...++.....+... .....+++.+|.++. ..|+..|-.|-.
T Consensus 55 ~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~ 134 (312)
T PF03224_consen 55 QYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLS 134 (312)
T ss_dssp -------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3466677777776 789999999999999988887554444441 126788888888765 556666666633
Q ss_pred ---CHHHHhhCCchHHHHHHhhcCCccccchhcccCchHHHHHHHHHHHccCCCCCchhhhhHhhcCCCHHHHHhhc---
Q 000744 604 ---AFAQLSAHEFIPSLVQLVLNKTEEFDELQFVMEPKDAAIEMLEQILMGGDKKSRSITALSLISANGIPALIKCL--- 677 (1306)
Q Consensus 604 ---~~~~i~~~g~i~~Lv~ll~~g~~~~~~~~~~~~~k~aa~~lL~~l~~~~~~~~~~~n~~~i~~~g~i~~Lv~~l--- 677 (1306)
........++++.++..|++-....+ . .=...|+..|..|+.. ++.+..+.++||++.|+..|
T Consensus 135 ~~~~~~~~~~~~~l~~ll~~L~~~l~~~~-~----~~~~~av~~L~~LL~~------~~~R~~f~~~~~v~~l~~iL~~~ 203 (312)
T PF03224_consen 135 QGPKRSEKLVKEALPKLLQWLSSQLSSSD-S----ELQYIAVQCLQNLLRS------KEYRQVFWKSNGVSPLFDILRKQ 203 (312)
T ss_dssp STTT--HHHHHHHHHHHHHHHH-TT-HHH-H-------HHHHHHHHHHHTS------HHHHHHHHTHHHHHHHHHHHH--
T ss_pred cCCccccchHHHHHHHHHHHHHHhhcCCC-c----chHHHHHHHHHHHhCc------chhHHHHHhcCcHHHHHHHHHhh
Confidence 22233236888999999998432211 0 0014677788888755 59999999999999999998
Q ss_pred ---CC---hhHHHHHHHHHHhhhhccchhHHHHHHhcccchhhhhhhcCCc-hhHhHHHHHHHHHHhcch
Q 000744 678 ---DR---VEVRRSIVSILLCCMHADKSCKTLIAKRIELSHVLDLFHDGND-SVRGICINFLSELVLLNR 740 (1306)
Q Consensus 678 ---~~---~~~~~~~~~~L~~~~~~~~~~r~~i~~~~~~~~l~~ll~~g~~-~~k~~a~~~L~~L~~~~~ 740 (1306)
+. .+-.-.+ ...+.++..+......+.+..-++.|+++++...+ +--.-++..|.+|+..+.
T Consensus 204 ~~~~~~~~~Ql~Y~~-ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~ 272 (312)
T PF03224_consen 204 ATNSNSSGIQLQYQA-LLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAP 272 (312)
T ss_dssp -------HHHHHHHH-HHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSS
T ss_pred cccCCCCchhHHHHH-HHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccH
Confidence 11 1112222 22233678888888888888888888888875441 112234455555554333
No 443
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.87 E-value=0.0071 Score=48.94 Aligned_cols=45 Identities=24% Similarity=0.254 Sum_probs=38.5
Q ss_pred ccCcccccccCCcEEcCCCC-cccHHHHHHHHHcCCCCCCCCCCcc
Q 000744 344 FVCPITGQIFNDPVTLETGQ-TYERKAIQEWLKRGNTTCPITRQPL 388 (1306)
Q Consensus 344 ~~CpIc~~l~~dPv~~~cGh-tfc~~cI~~~~~~~~~~CP~c~~~l 388 (1306)
-.|.||.+---|.|+-.||| -.|..|-.+.+..++..||.||.++
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi 53 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPI 53 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence 35999988877888889999 4699999999988889999999763
No 444
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=94.74 E-value=0.021 Score=44.88 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=33.7
Q ss_pred ccccccccccchHHHHHHHhcCCcHHHHHHHHHHHHHHh
Q 000744 525 GVHAYLLKPTIINGFAEILSASLSREVLRTSVYILSELM 563 (1306)
Q Consensus 525 ~~~~~i~~~~~I~~Lv~~L~~~~~~~~~e~Av~~L~~L~ 563 (1306)
+.+..|.+.|+|++|+.+|.++ +.++++.|+.+|.||+
T Consensus 3 ~~~~~i~~~g~i~~Lv~ll~~~-~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 3 ENKQAIVEAGGIPPLVQLLKSP-DPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTHHHHHHHHTTSS-SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHcCC-CHHHHHHHHHHHHHHh
Confidence 3446788999999999999977 9999999999999984
No 445
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=94.64 E-value=1.1 Score=56.16 Aligned_cols=109 Identities=17% Similarity=0.192 Sum_probs=73.3
Q ss_pred hcCCCCHHHHHHHHHHHHHHhhhcCCCcccccccccccchHHHHHHHhcCCcHHHHHHHHHHHHHHhccCcccccccccc
Q 000744 497 LCTSENLQECETAVLAIARLWKESKGDPGVHAYLLKPTIINGFAEILSASLSREVLRTSVYILSELMVADESVGDILTSV 576 (1306)
Q Consensus 497 Ll~s~~~~~~e~Av~~i~~L~~~~~~~~~~~~~i~~~~~I~~Lv~~L~~~~~~~~~e~Av~~L~~L~s~~~~~~~~I~~~ 576 (1306)
=+.+++...+-.|+..|.++.... ++ +..++.+..+|.+. ++.+|..|+.+|..+...+++ ....
T Consensus 87 dl~~~n~~~~~lAL~~l~~i~~~~---------~~-~~l~~~v~~ll~~~-~~~VRk~A~~~l~~i~~~~p~----~~~~ 151 (526)
T PF01602_consen 87 DLNSPNPYIRGLALRTLSNIRTPE---------MA-EPLIPDVIKLLSDP-SPYVRKKAALALLKIYRKDPD----LVED 151 (526)
T ss_dssp HHCSSSHHHHHHHHHHHHHH-SHH---------HH-HHHHHHHHHHHHSS-SHHHHHHHHHHHHHHHHHCHC----CHHG
T ss_pred hhcCCCHHHHHHHHhhhhhhcccc---------hh-hHHHHHHHHHhcCC-chHHHHHHHHHHHHHhccCHH----HHHH
Confidence 366888888888988888877322 22 34577788888877 889999999999999666553 1111
Q ss_pred CCchHHHHHHHhcCh----HHHHHHHhccCCCHHHHhhCCchHHHHHHhhc
Q 000744 577 DSDFDCLAALLKNGL----GEAAVLIYQLRPAFAQLSAHEFIPSLVQLVLN 623 (1306)
Q Consensus 577 ~~~i~~Lv~lLk~g~----~~Aa~aL~~L~~~~~~i~~~g~i~~Lv~ll~~ 623 (1306)
. -++.|..+|++.. ..|..+++.+..+..... .++|.++..|.+
T Consensus 152 ~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~--~~~~~~~~~L~~ 199 (526)
T PF01602_consen 152 E-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYK--SLIPKLIRILCQ 199 (526)
T ss_dssp G-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHT--THHHHHHHHHHH
T ss_pred H-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhh--hhHHHHHHHhhh
Confidence 2 4888999997754 567777777722222222 667777666654
No 446
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.61 E-value=0.024 Score=60.46 Aligned_cols=53 Identities=17% Similarity=0.538 Sum_probs=46.1
Q ss_pred CCcccCcccccccCCcE----EcCCCCcccHHHHHHHHHcCCCCCCCCCCccCCCCCC
Q 000744 341 PKDFVCPITGQIFNDPV----TLETGQTYERKAIQEWLKRGNTTCPITRQPLCSNSLP 394 (1306)
Q Consensus 341 ~~~~~CpIc~~l~~dPv----~~~cGhtfc~~cI~~~~~~~~~~CP~c~~~l~~~~l~ 394 (1306)
...|.||+|.+.+.+.+ .-+|||.||..|.++.+.. ...||+|..++..++++
T Consensus 219 s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~-D~v~pv~d~plkdrdiI 275 (303)
T KOG3039|consen 219 SKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK-DMVDPVTDKPLKDRDII 275 (303)
T ss_pred ccceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc-cccccCCCCcCcccceE
Confidence 37799999999998854 3479999999999998876 67899999999998886
No 447
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=94.56 E-value=4.7 Score=46.81 Aligned_cols=218 Identities=11% Similarity=0.097 Sum_probs=110.0
Q ss_pred EEeCCCcEEEEeCCCceEE---cccC--CCC----EEEEEEeCC--E--EEEEECCCcEEEEeCCCCccceEEEEcccCc
Q 000744 1013 NLSSVNATELWHCNEVTEL---DSST--NGE----VLSLIHLKG--R--VLSSHSDGTIKMWDSGKRVLRLIQEVREHTR 1079 (1306)
Q Consensus 1013 sgs~Dg~I~IWd~~~~~~i---~~~H--~~~----V~sl~fspd--~--LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~ 1079 (1306)
-|-..-.|.+||.++.... .... ... .....++.| + +.-.+--.+|.|-|+..+ +.+.++.- .+
T Consensus 62 rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~--kvv~ei~~-PG 138 (342)
T PF06433_consen 62 RGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAK--KVVGEIDT-PG 138 (342)
T ss_dssp EEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTT--EEEEEEEG-TS
T ss_pred cccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCC--ceeeeecC-CC
Confidence 3445567899999874322 2221 111 112344443 2 223333455666777666 55555532 12
Q ss_pred cEEEEEEcC-CCCEEEEEeCCCcEEEEEcC-CCcee--EEEeec-CCCCeEEE-Ee---CCcEEEEEcCCCeEEEEEecC
Q 000744 1080 AVTCLYVPS-SGDKLYSGSLDKTIRVWSIK-PEEIH--CLQVHN-VKEAVHEL-TA---NAEIACFVSPATGVKVYNWSG 1150 (1306)
Q Consensus 1080 ~V~sl~fsp-dg~~L~Sgs~DgtI~VWdi~-~~~~~--~i~~~~-~~~~V~sl-~~---~~~~v~~s~dg~~I~i~~~~~ 1150 (1306)
...+ + | .++.|.+-+.||++.-..+. .|+.. ....+. ..+++..- .+ .+.+++.+.+|+ |...+..+
T Consensus 139 -C~~i-y-P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~-v~~~dlsg 214 (342)
T PF06433_consen 139 -CWLI-Y-PSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGN-VYSADLSG 214 (342)
T ss_dssp -EEEE-E-EEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSE-EEEEEETT
T ss_pred -EEEE-E-ecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCE-EEEEeccC
Confidence 2222 2 3 23568888999999888887 44422 111121 22222211 11 234444555555 55555554
Q ss_pred CE-EE---ecc-----------CCCeEEEEEeC--CEEEEEE---CCC-------cEEEEECCCCceeEEecCcccccCC
Q 000744 1151 AI-KH---INF-----------NKHVKSLVMTG--DKLYCGC---SGY-------SIQEVDLGNLTSTTFYAGTKKLLGK 1203 (1306)
Q Consensus 1151 ~~-~l---~~~-----------~~~V~sl~~s~--d~L~sgs---~Dg-------~I~iwDl~~~~~~~~~~~~~~l~gh 1203 (1306)
.. +. |.. .+.-.-+++++ +.|++-- .++ .|.+||+.+++.+..+....
T Consensus 215 ~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~----- 289 (342)
T PF06433_consen 215 DSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH----- 289 (342)
T ss_dssp SSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE-----
T ss_pred CcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC-----
Confidence 32 11 210 12223455553 3433322 121 47888999999988665221
Q ss_pred ccEEEEEEe-CCcEEEEEEe-cCCCEEEEEECCCCceEEEEec
Q 000744 1204 QTIHSLHMH-NGLLFAGGSS-VDGTAGKVFSISSKTAVGSFTT 1244 (1306)
Q Consensus 1204 ~~I~sl~~s-~~~~llas~s-~Dg~~I~IWD~~t~~~l~~l~~ 1244 (1306)
++.+|.++ ++..++.+.+ .++ .+.+||..+|+.++++.+
T Consensus 290 -~~~Si~Vsqd~~P~L~~~~~~~~-~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 290 -PIDSIAVSQDDKPLLYALSAGDG-TLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp -EESEEEEESSSS-EEEEEETTTT-EEEEEETTT--EEEEE--
T ss_pred -ccceEEEccCCCcEEEEEcCCCC-eEEEEeCcCCcEEeehhc
Confidence 67789998 5554554433 355 899999999999999984
No 448
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=94.56 E-value=2.3 Score=53.37 Aligned_cols=212 Identities=19% Similarity=0.236 Sum_probs=126.2
Q ss_pred HHhChhhHHHhhcCCCCHHHHHHHHHHHHHHhhhcCCCcccccccccccchHHHHHHHhcCCcHHHHHHHHHHHHHHhcc
Q 000744 486 IINGLKPYVTCLCTSENLQECETAVLAIARLWKESKGDPGVHAYLLKPTIINGFAEILSASLSREVLRTSVYILSELMVA 565 (1306)
Q Consensus 486 ~~~~~~~~l~~Ll~s~~~~~~e~Av~~i~~L~~~~~~~~~~~~~i~~~~~I~~Lv~~L~~~~~~~~~e~Av~~L~~L~s~ 565 (1306)
+...+.+.|..++.+++.-.+..|+.++.++.+..++ +.+...++.+..+|... ++.++.+|+.+|.++ ..
T Consensus 111 ~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~-------~~~~~~~~~l~~lL~d~-~~~V~~~a~~~l~~i-~~ 181 (526)
T PF01602_consen 111 MAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD-------LVEDELIPKLKQLLSDK-DPSVVSAALSLLSEI-KC 181 (526)
T ss_dssp HHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC-------CHHGGHHHHHHHHTTHS-SHHHHHHHHHHHHHH-HC
T ss_pred hhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH-------HHHHHHHHHHhhhccCC-cchhHHHHHHHHHHH-cc
Confidence 3455677888889999999999999999999988652 22222689999999666 899999999999988 22
Q ss_pred CccccccccccCCchHHHHHHHh----cCh----HHHHHHHhccCC-CHHHHhhCCchHHHHHHhhcCCccccchhcccC
Q 000744 566 DESVGDILTSVDSDFDCLAALLK----NGL----GEAAVLIYQLRP-AFAQLSAHEFIPSLVQLVLNKTEEFDELQFVME 636 (1306)
Q Consensus 566 ~~~~~~~I~~~~~~i~~Lv~lLk----~g~----~~Aa~aL~~L~~-~~~~i~~~g~i~~Lv~ll~~g~~~~~~~~~~~~ 636 (1306)
++..- ...++.++..|. ... ..+...|-.+.+ +.........++.+..+|.+.+...-
T Consensus 182 ~~~~~------~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~------- 248 (526)
T PF01602_consen 182 NDDSY------KSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVV------- 248 (526)
T ss_dssp THHHH------TTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred Ccchh------hhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHH-------
Confidence 22110 034555655554 333 344444545555 22222226788888888886442110
Q ss_pred chHHHHHHHHHHHccCCCCCchhhhhHhhcCCCHHHHHhhc--CChhHHHHHHHHHHhhhhccchhHHHHHHhcccchhh
Q 000744 637 PKDAAIEMLEQILMGGDKKSRSITALSLISANGIPALIKCL--DRVEVRRSIVSILLCCMHADKSCKTLIAKRIELSHVL 714 (1306)
Q Consensus 637 ~k~aa~~lL~~l~~~~~~~~~~~n~~~i~~~g~i~~Lv~~l--~~~~~~~~~~~~L~~~~~~~~~~r~~i~~~~~~~~l~ 714 (1306)
-.|+-++..+. .++. .-..+++.|+.+| .+.+-+..++..|......+ ...+. .....+
T Consensus 249 --~e~~~~i~~l~------~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~---~~~v~---~~~~~~ 309 (526)
T PF01602_consen 249 --YEAIRLIIKLS------PSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN---PPAVF---NQSLIL 309 (526)
T ss_dssp --HHHHHHHHHHS------SSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC---HHHHG---THHHHH
T ss_pred --HHHHHHHHHhh------cchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc---chhhh---hhhhhh
Confidence 01222222211 1111 4445677888888 45556666776666554433 12222 222234
Q ss_pred hhhh-cCCchhHhHHHHHHHHHHhc
Q 000744 715 DLFH-DGNDSVRGICINFLSELVLL 738 (1306)
Q Consensus 715 ~ll~-~g~~~~k~~a~~~L~~L~~~ 738 (1306)
..+. +.+..-|..|+.+|..++..
T Consensus 310 ~~l~~~~d~~Ir~~~l~lL~~l~~~ 334 (526)
T PF01602_consen 310 FFLLYDDDPSIRKKALDLLYKLANE 334 (526)
T ss_dssp HHHHCSSSHHHHHHHHHHHHHH--H
T ss_pred heecCCCChhHHHHHHHHHhhcccc
Confidence 4455 55555688888888888743
No 449
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=94.47 E-value=11 Score=42.53 Aligned_cols=203 Identities=10% Similarity=0.049 Sum_probs=101.9
Q ss_pred cCCCCEEEEEEeCC---EEEEEECCCcEEEEeCCCCccceEEEEccc-CccEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 000744 1034 STNGEVLSLIHLKG---RVLSSHSDGTIKMWDSGKRVLRLIQEVREH-TRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKP 1109 (1306)
Q Consensus 1034 ~H~~~V~sl~fspd---~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H-~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~ 1109 (1306)
+-...++.|+|+|+ .+++....+.|...+.+ | +.++.+.-. .+..-.|++..++.++++--.++.+.+.++..
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G--~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~ 95 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-G--KVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDD 95 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEETT-----EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE--
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-C--CEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEec
Confidence 34456999999985 66666777888888875 5 556665432 35678889988887777766789999888854
Q ss_pred Cc--eeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeC--CEEEEEECCCcEEEEEC
Q 000744 1110 EE--IHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTG--DKLYCGCSGYSIQEVDL 1185 (1306)
Q Consensus 1110 ~~--~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~--d~L~sgs~Dg~I~iwDl 1185 (1306)
.. ...- .+..+. ..... ..+..+-.++|++ +.++.+....-..+|.+
T Consensus 96 ~~~~~~~~-------~~~~~~-------l~~~~---------------~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~ 146 (248)
T PF06977_consen 96 DTTSLDRA-------DVQKIS-------LGFPN---------------KGNKGFEGLAYDPKTNRLFVAKERKPKRLYEV 146 (248)
T ss_dssp --TT--EE-------EEEEEE----------S------------------SS--EEEEEETTTTEEEEEEESSSEEEEEE
T ss_pred cccccchh-------hceEEe-------ccccc---------------CCCcceEEEEEcCCCCEEEEEeCCCChhhEEE
Confidence 31 1100 011111 00000 0233455666663 35555555555555554
Q ss_pred CC---CceeEEecC--cccccCCc-cEEEEEEeCC-cEEEEEEecCCCEEEEEECCCCceEEEEe--c--C------CCE
Q 000744 1186 GN---LTSTTFYAG--TKKLLGKQ-TIHSLHMHNG-LLFAGGSSVDGTAGKVFSISSKTAVGSFT--T--G------IDI 1248 (1306)
Q Consensus 1186 ~~---~~~~~~~~~--~~~l~gh~-~I~sl~~s~~-~~llas~s~Dg~~I~IWD~~t~~~l~~l~--~--~------~~V 1248 (1306)
.. ......... ........ .+.++.++|. +.+++-+.... .|..+| .+|+.+..+. . + .+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~-~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~Qp 224 (248)
T PF06977_consen 147 NGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESR-LLLELD-RQGRVVSSLSLDRGFHGLSKDIPQP 224 (248)
T ss_dssp ESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTT-EEEEE--TT--EEEEEE-STTGGG-SS---SE
T ss_pred ccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCC-eEEEEC-CCCCEEEEEEeCCcccCcccccCCc
Confidence 43 111111110 00001112 6788999843 34444444444 899999 7788777665 1 1 247
Q ss_pred EEEEEcCc-EEEEEECCCcEEEE
Q 000744 1249 QHLAVNSD-FIFTATKCGTIEVW 1270 (1306)
Q Consensus 1249 ~sla~spd-~Lasgs~Dg~I~IW 1270 (1306)
-.|+|.++ .|+..|+-+..+++
T Consensus 225 EGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 225 EGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp EEEEE-TT--EEEEETTTEEEEE
T ss_pred cEEEECCCCCEEEEcCCceEEEe
Confidence 88999988 77777777665554
No 450
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=94.36 E-value=0.91 Score=43.89 Aligned_cols=89 Identities=20% Similarity=0.313 Sum_probs=62.9
Q ss_pred cEEEEEeCCCcEEEEeCCCceEEcccCCCCEEEEEEeC-CEEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEc
Q 000744 1009 KALMNLSSVNATELWHCNEVTELDSSTNGEVLSLIHLK-GRVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVP 1087 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~~~i~~~H~~~V~sl~fsp-d~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fs 1087 (1306)
.-|+.||.|..||+|+-.+...-. .-.+.|+++.-.. ..++.+-.+|+|-+|+-... +..++.. ..++++.+.
T Consensus 16 ~eLlvGs~D~~IRvf~~~e~~~Ei-~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~R----lWRiKSK-~~~~~~~~~ 89 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGDEIVAEI-TETDKVTSLCSLGGGRFAYALANGTVGVYDRSQR----LWRIKSK-NQVTSMAFY 89 (111)
T ss_pred ceEEEecCCcEEEEEeCCcEEEEE-ecccceEEEEEcCCCEEEEEecCCEEEEEeCcce----eeeeccC-CCeEEEEEE
Confidence 569999999999999977644332 3356688887765 59999999999999987553 3444432 336666654
Q ss_pred C-C--C-CEEEEEeCCCcEE
Q 000744 1088 S-S--G-DKLYSGSLDKTIR 1103 (1306)
Q Consensus 1088 p-d--g-~~L~Sgs~DgtI~ 1103 (1306)
. + | .-|++|=.+|.|-
T Consensus 90 D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 90 DINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred cCCCCCceEEEEEecCCeEE
Confidence 4 2 3 3688888888764
No 451
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.28 E-value=0.099 Score=56.28 Aligned_cols=99 Identities=19% Similarity=0.179 Sum_probs=64.2
Q ss_pred cEEEEEeCCCcEEEEeCCCc---eEEcccCCCCEEEEEEeC-C--EEEEEECCCcEEEEeCCCCccceEEEEcccC-ccE
Q 000744 1009 KALMNLSSVNATELWHCNEV---TELDSSTNGEVLSLIHLK-G--RVLSSHSDGTIKMWDSGKRVLRLIQEVREHT-RAV 1081 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~---~~i~~~H~~~V~sl~fsp-d--~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~-~~V 1081 (1306)
.-++.|+.||.|.+|+.... ......-...|.++.-.. + +..+++.||.|+.|++.-+ +.+.....|+ .++
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~--k~~g~~g~h~~~~~ 148 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN--KVLGYVGQHNFESG 148 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccC--ceeeeeccccCCCc
Confidence 56899999999999998732 111222234444444333 3 8899999999999999887 5555565666 445
Q ss_pred EEEEEcCCCCEEEEE--eCCCcEEEEEcCC
Q 000744 1082 TCLYVPSSGDKLYSG--SLDKTIRVWSIKP 1109 (1306)
Q Consensus 1082 ~sl~fspdg~~L~Sg--s~DgtI~VWdi~~ 1109 (1306)
.....+..+..+.+. |.|..++.|++..
T Consensus 149 e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 149 EELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ceeEEecCCceEEeeccccchhhhhcchhh
Confidence 444444555555555 5666666666554
No 452
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=94.18 E-value=1.3 Score=53.98 Aligned_cols=179 Identities=13% Similarity=0.032 Sum_probs=93.0
Q ss_pred cCccEEEEEEcCCCCEEEEEe---CC-CcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCE
Q 000744 1077 HTRAVTCLYVPSSGDKLYSGS---LD-KTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAI 1152 (1306)
Q Consensus 1077 H~~~V~sl~fspdg~~L~Sgs---~D-gtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~ 1152 (1306)
-...+..-.|+|++..++-.+ .. ..+.++|+.+++...+..+. + ....-.|+|||+.+
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~--g-------~~~~P~fspDG~~l--------- 252 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFN--G-------NNGAPAFSPDGSKL--------- 252 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccC--C-------ccCCccCCCCCCEE---------
Confidence 344566678888887655332 12 35888999888533333322 1 11122377888733
Q ss_pred EEeccCCCeEEEEEeCCEEEEEECCCc--EEEEECCCCceeEEecCcccccCCccEEEEEEeCCcEEEE-EEecCCC-EE
Q 000744 1153 KHINFNKHVKSLVMTGDKLYCGCSGYS--IQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLLFAG-GSSVDGT-AG 1228 (1306)
Q Consensus 1153 ~l~~~~~~V~sl~~s~d~L~sgs~Dg~--I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~lla-s~s~Dg~-~I 1228 (1306)
+++...||. |+++|+.++...+ +.. ..+. -..=.|+|++..++ .++..|. .|
T Consensus 253 ------------------~f~~~rdg~~~iy~~dl~~~~~~~-Lt~---~~gi--~~~Ps~spdG~~ivf~Sdr~G~p~I 308 (425)
T COG0823 253 ------------------AFSSSRDGSPDIYLMDLDGKNLPR-LTN---GFGI--NTSPSWSPDGSKIVFTSDRGGRPQI 308 (425)
T ss_pred ------------------EEEECCCCCccEEEEcCCCCccee-ccc---CCcc--ccCccCCCCCCEEEEEeCCCCCcce
Confidence 445555665 6667887776333 211 1111 12345666654444 4333331 45
Q ss_pred EEEECCCCceEEEEe--cCCCEEEEEEcCc--EEEEEE-CCCc--EEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCC
Q 000744 1229 KVFSISSKTAVGSFT--TGIDIQHLAVNSD--FIFTAT-KCGT--IEVWLKERVTRVASVKANNSGGGHAKITCLGTGVD 1301 (1306)
Q Consensus 1229 ~IWD~~t~~~l~~l~--~~~~V~sla~spd--~Lasgs-~Dg~--I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpd 1301 (1306)
.++|...+.. ..+. ..... .-.|+|| +|+..+ .+|. |.+.|+.++...+.+.. ......-.|.|+
T Consensus 309 ~~~~~~g~~~-~riT~~~~~~~-~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~------~~~~e~ps~~~n 380 (425)
T COG0823 309 YLYDLEGSQV-TRLTFSGGGNS-NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTS------TYLNESPSWAPN 380 (425)
T ss_pred EEECCCCCce-eEeeccCCCCc-CccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccc------cccCCCCCcCCC
Confidence 5666665544 3333 22222 5667888 444444 3455 66677766654555542 123344556777
Q ss_pred CCcc
Q 000744 1302 GHPY 1305 (1306)
Q Consensus 1302 g~~L 1305 (1306)
|+++
T Consensus 381 g~~i 384 (425)
T COG0823 381 GRMI 384 (425)
T ss_pred CceE
Confidence 7655
No 453
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=94.18 E-value=2.7 Score=49.28 Aligned_cols=170 Identities=13% Similarity=0.154 Sum_probs=96.3
Q ss_pred cEEEEEeC----------CCcEEEEeCCCc----eEEc----ccCCCCEEEEEEeCCEEEEEECCCcEEEEeCCCCc-cc
Q 000744 1009 KALMNLSS----------VNATELWHCNEV----TELD----SSTNGEVLSLIHLKGRVLSSHSDGTIKMWDSGKRV-LR 1069 (1306)
Q Consensus 1009 ~~Lasgs~----------Dg~I~IWd~~~~----~~i~----~~H~~~V~sl~fspd~LaSgs~Dg~I~vWd~~t~~-~~ 1069 (1306)
.+|+.|.. .|.|.++++.+. ..+. ....++|++|+-..+.|+.+. ++.|.+|++.... ..
T Consensus 43 ~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~-g~~l~v~~l~~~~~l~ 121 (321)
T PF03178_consen 43 EYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAV-GNKLYVYDLDNSKTLL 121 (321)
T ss_dssp EEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEE-TTEEEEEEEETTSSEE
T ss_pred CEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEee-cCEEEEEEccCcccch
Confidence 56666643 288999998762 1221 334899999998888755555 5899999998874 22
Q ss_pred eEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCC--ceeEEEeecCCCCeEEEEe--CC-cEEEEEcCCCeEE
Q 000744 1070 LIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPE--EIHCLQVHNVKEAVHELTA--NA-EIACFVSPATGVK 1144 (1306)
Q Consensus 1070 ~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~--~~~~i~~~~~~~~V~sl~~--~~-~~v~~s~dg~~I~ 1144 (1306)
....+.. ...|+++... +++++.|...+.+.++..+.. +...+.......+++++.| +. .++....+|+ +.
T Consensus 122 ~~~~~~~-~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gn-l~ 197 (321)
T PF03178_consen 122 KKAFYDS-PFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGN-LF 197 (321)
T ss_dssp EEEEE-B-SSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSE-EE
T ss_pred hhheecc-eEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCe-EE
Confidence 2223322 2366666654 669999999898988865542 2344433334566778776 33 3333333443 66
Q ss_pred EEEecCC----------EE---EeccCCCeEEE---EEeC-----C-----EEEEEECCCcEEEE
Q 000744 1145 VYNWSGA----------IK---HINFNKHVKSL---VMTG-----D-----KLYCGCSGYSIQEV 1183 (1306)
Q Consensus 1145 i~~~~~~----------~~---l~~~~~~V~sl---~~s~-----d-----~L~sgs~Dg~I~iw 1183 (1306)
++..+.. .. .+.....|+++ ++.+ + .++.++.+|.|...
T Consensus 198 ~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 198 VLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 6655521 11 12345666666 3223 1 26777777777633
No 454
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.98 E-value=2.3 Score=53.71 Aligned_cols=211 Identities=9% Similarity=0.072 Sum_probs=137.7
Q ss_pred hhhHHHhhcCCCCHHHHHHHHHHHHHHhhhcCCCcccccccccccchHHHHHHHhcCCcHHHHHHHHHHHHHHhccCccc
Q 000744 490 LKPYVTCLCTSENLQECETAVLAIARLWKESKGDPGVHAYLLKPTIINGFAEILSASLSREVLRTSVYILSELMVADESV 569 (1306)
Q Consensus 490 ~~~~l~~Ll~s~~~~~~e~Av~~i~~L~~~~~~~~~~~~~i~~~~~I~~Lv~~L~~~~~~~~~e~Av~~L~~L~s~~~~~ 569 (1306)
+..+|..|-...|..+|.+|+.++..+-...+.. ...-+.-.-+||.||.+|+...+.+..-+|..+|.+|.-.-+.-
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEe--sLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S 246 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEE--SLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS 246 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchh--hhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence 3455666555668999999999998877655432 23344445679999999999989999999999999998887877
Q ss_pred cccccccCCchHHHHHHHhc----Ch-HHHHHHHhccCC-CHHHHhhCCchHHHHHHhhcCCccccchhcccCchHHHHH
Q 000744 570 GDILTSVDSDFDCLAALLKN----GL-GEAAVLIYQLRP-AFAQLSAHEFIPSLVQLVLNKTEEFDELQFVMEPKDAAIE 643 (1306)
Q Consensus 570 ~~~I~~~~~~i~~Lv~lLk~----g~-~~Aa~aL~~L~~-~~~~i~~~g~i~~Lv~ll~~g~~~~~~~~~~~~~k~aa~~ 643 (1306)
...++. .++||.|++=|.. .. +.+-.||-.++- -...|..+|++-..|.-|..=+ ..-+-+|++
T Consensus 247 ~a~vV~-~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFS---------i~aQR~Ala 316 (1051)
T KOG0168|consen 247 SAIVVD-EHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFS---------IHAQRVALA 316 (1051)
T ss_pred hheeec-ccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHH---------HHHHHHHHH
Confidence 777776 8999999887765 22 778888888877 7888999999999888877644 122335666
Q ss_pred HHHHHHccCCCCCchhhhhHhhcCCCHHHHHhhc-----CChhHHHHHHHHHHhhhhccchhHHHHHHhcccchhhhhhh
Q 000744 644 MLEQILMGGDKKSRSITALSLISANGIPALIKCL-----DRVEVRRSIVSILLCCMHADKSCKTLIAKRIELSHVLDLFH 718 (1306)
Q Consensus 644 lL~~l~~~~~~~~~~~n~~~i~~~g~i~~Lv~~l-----~~~~~~~~~~~~L~~~~~~~~~~r~~i~~~~~~~~l~~ll~ 718 (1306)
+-.++-.. ..++--.-+++ ++|.|-.+| ...|-...++.-+.+-.+.+..--..+...+-+.-..+||.
T Consensus 317 iaaN~Cks----i~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLls 390 (1051)
T KOG0168|consen 317 IAANCCKS----IRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLS 390 (1051)
T ss_pred HHHHHHhc----CCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHh
Confidence 65554211 11121122222 577777777 12333333333333333333444455555555555555554
No 455
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.97 E-value=0.79 Score=57.16 Aligned_cols=208 Identities=15% Similarity=0.186 Sum_probs=147.1
Q ss_pred hhhHHHhhcCCCCHHHHHHHHHHHHHHhhhcCCCcccccccccccchHHHHHHHhcC-CcHHHHHHHHHHHHHHhccCc-
Q 000744 490 LKPYVTCLCTSENLQECETAVLAIARLWKESKGDPGVHAYLLKPTIINGFAEILSAS-LSREVLRTSVYILSELMVADE- 567 (1306)
Q Consensus 490 ~~~~l~~Ll~s~~~~~~e~Av~~i~~L~~~~~~~~~~~~~i~~~~~I~~Lv~~L~~~-~~~~~~e~Av~~L~~L~s~~~- 567 (1306)
+..+..++-+|-=++++..|+..|-.+++... ..+-+-++++|+.+|... -+++....+...|+++.+.++
T Consensus 24 I~kLcDRvessTL~eDRR~A~rgLKa~srkYR-------~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~ 96 (970)
T KOG0946|consen 24 IEKLCDRVESSTLLEDRRDAVRGLKAFSRKYR-------EEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS 96 (970)
T ss_pred HHHHHHHHhhccchhhHHHHHHHHHHHHHHHH-------HHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence 33444454556667889999999999998652 445667799999999985 479999999999999988885
Q ss_pred -----ccc----------ccccccCCchHHHHHHHhcC---h-HHHHHHHhcc---CC---CHHHHhhCCchHHHHHHhh
Q 000744 568 -----SVG----------DILTSVDSDFDCLAALLKNG---L-GEAAVLIYQL---RP---AFAQLSAHEFIPSLVQLVL 622 (1306)
Q Consensus 568 -----~~~----------~~I~~~~~~i~~Lv~lLk~g---~-~~Aa~aL~~L---~~---~~~~i~~~g~i~~Lv~ll~ 622 (1306)
.-+ +......+-|.+|+..+..- . .-|+-+|-+| .+ -...++..-+|..||.+|+
T Consensus 97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~ 176 (970)
T KOG0946|consen 97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR 176 (970)
T ss_pred hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh
Confidence 222 11222478888888888763 3 3344444333 33 4555677889999999999
Q ss_pred cCCccccchhcccCchHHHHHHHHHHHccCCCCCchhhhhHhhcCCCHHHHHhhc---CChhH---HHHHHHHHHhhhhc
Q 000744 623 NKTEEFDELQFVMEPKDAAIEMLEQILMGGDKKSRSITALSLISANGIPALIKCL---DRVEV---RRSIVSILLCCMHA 696 (1306)
Q Consensus 623 ~g~~~~~~~~~~~~~k~aa~~lL~~l~~~~~~~~~~~n~~~i~~~g~i~~Lv~~l---~~~~~---~~~~~~~L~~~~~~ 696 (1306)
+..+.. +++|+.+|..|+... +....-++=+++...|...+ |..+. -+.++-+|.+++..
T Consensus 177 DsrE~I---------RNe~iLlL~eL~k~n-----~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~ 242 (970)
T KOG0946|consen 177 DSREPI---------RNEAILLLSELVKDN-----SSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKN 242 (970)
T ss_pred hhhhhh---------chhHHHHHHHHHccC-----chHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhh
Confidence 976554 468999999997553 33344455567777777777 32222 34466677778888
Q ss_pred cchhHHHHHHhcccchhhhhhh
Q 000744 697 DKSCKTLIAKRIELSHVLDLFH 718 (1306)
Q Consensus 697 ~~~~r~~i~~~~~~~~l~~ll~ 718 (1306)
+.++-.+.-+.+-+|.|..||.
T Consensus 243 N~SNQ~~FrE~~~i~rL~klL~ 264 (970)
T KOG0946|consen 243 NISNQNFFREGSYIPRLLKLLS 264 (970)
T ss_pred CcchhhHHhccccHHHHHhhcC
Confidence 8999999988888998886665
No 456
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.97 E-value=0.2 Score=60.82 Aligned_cols=90 Identities=14% Similarity=0.095 Sum_probs=74.5
Q ss_pred cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEe-cCCCEE-EEEEcCc--EEEEEECCCcEEEEECCCCeEEEE
Q 000744 1205 TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFT-TGIDIQ-HLAVNSD--FIFTATKCGTIEVWLKERVTRVAS 1280 (1306)
Q Consensus 1205 ~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~-~~~~V~-sla~spd--~Lasgs~Dg~I~IWd~~tg~~l~~ 1280 (1306)
.|.-+.|+|...+++....+| .+-+..++ .+.+.+++ ++.+++ +++|.|| .|+.|=.||+|++.|+++|..+..
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~g-elli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKG-ELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred ceEEEEEcCccchhheeccCC-cEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 577889999998888887777 79998887 88888888 666777 9999999 999999999999999999988887
Q ss_pred EecccCCCCCCCeEEEEEcC
Q 000744 1281 VKANNSGGGHAKITCLGTGV 1300 (1306)
Q Consensus 1281 l~~~~~~~~~~~V~slafSp 1300 (1306)
.. ......|.++-|+|
T Consensus 100 ~~----~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FL----FSVETDISKGIWDR 115 (665)
T ss_pred cc----cccccchheeeccc
Confidence 43 12345778888864
No 457
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=93.95 E-value=16 Score=44.03 Aligned_cols=218 Identities=9% Similarity=0.048 Sum_probs=127.0
Q ss_pred EEEEEeCC---EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCcee
Q 000744 1040 LSLIHLKG---RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSL---DKTIRVWSIKPEEIH 1113 (1306)
Q Consensus 1040 ~sl~fspd---~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~---DgtI~VWdi~~~~~~ 1113 (1306)
..++.++. ..++...++.|.+.|..+. .......--. .-..++++++++.++.+.. ++++.+.|..+++
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~--~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~-- 151 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATN--TVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK-- 151 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCccc--ceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCe--
Confidence 35555552 4555556789999998776 4555443222 5568899999987777665 6777777777763
Q ss_pred EEEeec-CCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCCEEEEEECCCcEEEEECCCCceeE
Q 000744 1114 CLQVHN-VKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGDKLYCGCSGYSIQEVDLGNLTSTT 1192 (1306)
Q Consensus 1114 ~i~~~~-~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~ 1192 (1306)
...... ...+ ..+. +.|+|..+ .++-..++.|.++|..+.....
T Consensus 152 ~~~~~~vG~~P-~~~a-------~~p~g~~v---------------------------yv~~~~~~~v~vi~~~~~~v~~ 196 (381)
T COG3391 152 VTATIPVGNTP-TGVA-------VDPDGNKV---------------------------YVTNSDDNTVSVIDTSGNSVVR 196 (381)
T ss_pred EEEEEecCCCc-ceEE-------ECCCCCeE---------------------------EEEecCCCeEEEEeCCCcceec
Confidence 222211 1112 3443 66777632 2233467888888866655442
Q ss_pred EecCcccccCCccEEEEEEeCCcEEE-EEEecC-CCEEEEEECCCCceEEE-EecCC-CEEEEEEcCc--EEEEE-ECCC
Q 000744 1193 FYAGTKKLLGKQTIHSLHMHNGLLFA-GGSSVD-GTAGKVFSISSKTAVGS-FTTGI-DIQHLAVNSD--FIFTA-TKCG 1265 (1306)
Q Consensus 1193 ~~~~~~~l~gh~~I~sl~~s~~~~ll-as~s~D-g~~I~IWD~~t~~~l~~-l~~~~-~V~sla~spd--~Lasg-s~Dg 1265 (1306)
-...........-..+.+++++..+ +....+ .+.+...|..++..... ..... ....+.++|+ +++.. +..+
T Consensus 197 -~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~ 275 (381)
T COG3391 197 -GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGG 275 (381)
T ss_pred -cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCC
Confidence 1111011111133456776554422 222112 13788899888877765 33222 5677888888 55555 3458
Q ss_pred cEEEEECCCCeEEEEEecccCCCC-CCCeEEEEEcCC
Q 000744 1266 TIEVWLKERVTRVASVKANNSGGG-HAKITCLGTGVD 1301 (1306)
Q Consensus 1266 ~I~IWd~~tg~~l~~l~~~~~~~~-~~~V~slafSpd 1301 (1306)
.+.+-|..+......+.. +.. +..+..+++.+.
T Consensus 276 ~V~vid~~~~~v~~~~~~---~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 276 TVSVIDGATDRVVKTGPT---GNEALGEPVSIAISPL 309 (381)
T ss_pred eEEEEeCCCCceeeeecc---cccccccceeccceee
Confidence 999999999888877664 222 134566666554
No 458
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=93.72 E-value=8 Score=45.55 Aligned_cols=101 Identities=21% Similarity=0.176 Sum_probs=73.1
Q ss_pred hhHHHhhcCCCCHHHHHHHHHHHHHHhhhcCCCcccccccccccchHHHHHHHhcCCcHHHHHHHHHHHHHHhccCcccc
Q 000744 491 KPYVTCLCTSENLQECETAVLAIARLWKESKGDPGVHAYLLKPTIINGFAEILSASLSREVLRTSVYILSELMVADESVG 570 (1306)
Q Consensus 491 ~~~l~~Ll~s~~~~~~e~Av~~i~~L~~~~~~~~~~~~~i~~~~~I~~Lv~~L~~~~~~~~~e~Av~~L~~L~s~~~~~~ 570 (1306)
...+..++.+.+...+..|+..+.. +....+++.|..+|... +..++..|+.+|..+ .
T Consensus 45 ~~~~~~~l~~~~~~vr~~aa~~l~~--------------~~~~~av~~l~~~l~d~-~~~vr~~a~~aLg~~---~---- 102 (335)
T COG1413 45 ADELLKLLEDEDLLVRLSAAVALGE--------------LGSEEAVPLLRELLSDE-DPRVRDAAADALGEL---G---- 102 (335)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhh--------------hchHHHHHHHHHHhcCC-CHHHHHHHHHHHHcc---C----
Confidence 3445556667677777777666422 23345699999999998 889999999988866 1
Q ss_pred ccccccCCchHHHHHHHhc-Ch----HHHHHHHhccCCCHHHHhhCCchHHHHHHhhcCC
Q 000744 571 DILTSVDSDFDCLAALLKN-GL----GEAAVLIYQLRPAFAQLSAHEFIPSLVQLVLNKT 625 (1306)
Q Consensus 571 ~~I~~~~~~i~~Lv~lLk~-g~----~~Aa~aL~~L~~~~~~i~~~g~i~~Lv~ll~~g~ 625 (1306)
.+.++++|+.+|.+ +. ..|+.+|..+.. ..++++|++++.+..
T Consensus 103 -----~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~-------~~a~~~l~~~l~~~~ 150 (335)
T COG1413 103 -----DPEAVPPLVELLENDENEGVRAAAARALGKLGD-------ERALDPLLEALQDED 150 (335)
T ss_pred -----ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc-------hhhhHHHHHHhccch
Confidence 26789999999995 44 678888865543 334889999988865
No 459
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.70 E-value=0.04 Score=61.50 Aligned_cols=47 Identities=17% Similarity=0.180 Sum_probs=40.0
Q ss_pred CcccCcccccccCCcEEcCCCCcccHHHHHHHHHcCCCCCCCCCCccC
Q 000744 342 KDFVCPITGQIFNDPVTLETGQTYERKAIQEWLKRGNTTCPITRQPLC 389 (1306)
Q Consensus 342 ~~~~CpIc~~l~~dPv~~~cGhtfc~~cI~~~~~~~~~~CP~c~~~l~ 389 (1306)
+|-.||||.--=...|..+|||.-|+.||.+++-+ .+.|--|+....
T Consensus 421 Ed~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN-~k~CFfCktTv~ 467 (489)
T KOG4692|consen 421 EDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN-CKRCFFCKTTVI 467 (489)
T ss_pred ccccCcceecccchhhccCCCCchHHHHHHHHHhc-CCeeeEecceee
Confidence 67899999887778889999999999999999987 566888876543
No 460
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.62 E-value=0.85 Score=54.51 Aligned_cols=142 Identities=10% Similarity=0.078 Sum_probs=88.1
Q ss_pred EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCC-------EEEEEeCCCcEEEEEcCCCceeEEEeecC
Q 000744 1048 RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGD-------KLYSGSLDKTIRVWSIKPEEIHCLQVHNV 1120 (1306)
Q Consensus 1048 ~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~-------~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~ 1120 (1306)
.+.++.....++--|++.| +.+.+++-|.+ |+-+.+.|+.+ .-+.|-.|+.|.-||++-.....+....
T Consensus 348 il~~~~~~~~l~klDIE~G--KIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q- 423 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERG--KIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ- 423 (644)
T ss_pred EeeCCCCcCcceeeecccc--eeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee-
Confidence 5667777778888899999 88888887776 77778878643 2345667888889998743211111000
Q ss_pred CCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEe-CCEEEEEECCCcEEEEECCCCceeEEecCccc
Q 000744 1121 KEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMT-GDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKK 1199 (1306)
Q Consensus 1121 ~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s-~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~ 1199 (1306)
+-.| .....-.|.+-. .++|++||.+|.|++||- .+...++ -
T Consensus 424 -----~kqy--------------------------~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKT-----A 466 (644)
T KOG2395|consen 424 -----SKQY--------------------------STKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKT-----A 466 (644)
T ss_pred -----cccc--------------------------ccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhh-----c
Confidence 0000 011122233333 347999999999999997 4333221 2
Q ss_pred ccCCc-cEEEEEEe-CCcEEEEEEecCCCEEEEEEC
Q 000744 1200 LLGKQ-TIHSLHMH-NGLLFAGGSSVDGTAGKVFSI 1233 (1306)
Q Consensus 1200 l~gh~-~I~sl~~s-~~~~llas~s~Dg~~I~IWD~ 1233 (1306)
+++-. +|..|..+ ++..+++++ +. .+.+.++
T Consensus 467 lPgLG~~I~hVdvtadGKwil~Tc--~t-yLlLi~t 499 (644)
T KOG2395|consen 467 LPGLGDAIKHVDVTADGKWILATC--KT-YLLLIDT 499 (644)
T ss_pred ccccCCceeeEEeeccCcEEEEec--cc-EEEEEEE
Confidence 34444 89999998 444555554 55 6777765
No 461
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=93.61 E-value=11 Score=45.32 Aligned_cols=210 Identities=13% Similarity=0.088 Sum_probs=126.4
Q ss_pred cEEEEEeCCCcEEEEeCCCceE---EcccCCCCEEEEEEeCC--EEEEEEC---CCcEEEEeCCCCccceEEEEcccCcc
Q 000744 1009 KALMNLSSVNATELWHCNEVTE---LDSSTNGEVLSLIHLKG--RVLSSHS---DGTIKMWDSGKRVLRLIQEVREHTRA 1080 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~~~---i~~~H~~~V~sl~fspd--~LaSgs~---Dg~I~vWd~~t~~~~~i~~l~~H~~~ 1080 (1306)
+..++...++.|.+.|...... +..+. ....++++++ .++.+.. +++|.+.|..++ ..+.+...-..+
T Consensus 87 ~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~--~~~~~~~vG~~P 162 (381)
T COG3391 87 KVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN--KVTATIPVGNTP 162 (381)
T ss_pred eEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCC--eEEEEEecCCCc
Confidence 5677777789999999654322 22233 4557788874 5555544 789999999888 666665544445
Q ss_pred EEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCC
Q 000744 1081 VTCLYVPSSGDKLYSGS-LDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNK 1159 (1306)
Q Consensus 1081 V~sl~fspdg~~L~Sgs-~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~ 1159 (1306)
..+++.|+|+.++... .+++|.+.|..+..... .. ......+.-.+..+.+.++|..+.+-..
T Consensus 163 -~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~---~~~~~~~~~~P~~i~v~~~g~~~yV~~~----------- 226 (381)
T COG3391 163 -TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GS---VGSLVGVGTGPAGIAVDPDGNRVYVAND----------- 226 (381)
T ss_pred -ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cc---cccccccCCCCceEEECCCCCEEEEEec-----------
Confidence 8999999999776665 78899999977653211 10 0001111113334447777764433221
Q ss_pred CeEEEEEeCCEEEEEECCCcEEEEECCCCceeEEecCcccccCCccEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceE
Q 000744 1160 HVKSLVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAV 1239 (1306)
Q Consensus 1160 ~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l 1239 (1306)
++.++.+...|..++.....-...... .-..+.++|.+.++......++.+.+-|..+....
T Consensus 227 --------------~~~~~~v~~id~~~~~v~~~~~~~~~~----~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~ 288 (381)
T COG3391 227 --------------GSGSNNVLKIDTATGNVTATDLPVGSG----APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVV 288 (381)
T ss_pred --------------cCCCceEEEEeCCCceEEEeccccccC----CCCceeECCCCCEEEEEecCCCeEEEEeCCCCcee
Confidence 111468888888887766531100000 12346677766666555334447999999988888
Q ss_pred EEEecCC----CEEEEEEcCc
Q 000744 1240 GSFTTGI----DIQHLAVNSD 1256 (1306)
Q Consensus 1240 ~~l~~~~----~V~sla~spd 1256 (1306)
..+.... .+..+++.+.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 289 KTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred eeecccccccccceeccceee
Confidence 8776332 3666666654
No 462
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=93.60 E-value=0.08 Score=41.59 Aligned_cols=39 Identities=15% Similarity=0.153 Sum_probs=35.0
Q ss_pred chhHHHHHHhcccchhhhhhhcCCchhHhHHHHHHHHHH
Q 000744 698 KSCKTLIAKRIELSHVLDLFHDGNDSVRGICINFLSELV 736 (1306)
Q Consensus 698 ~~~r~~i~~~~~~~~l~~ll~~g~~~~k~~a~~~L~~L~ 736 (1306)
..++..|.+.|++|+|++||.++.+..+++|+.+|.+|+
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 456788899999999999999999999999999998885
No 463
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.60 E-value=0.017 Score=62.40 Aligned_cols=53 Identities=23% Similarity=0.481 Sum_probs=41.5
Q ss_pred CcccCcccccccCCc----------EEcCCCCcccHHHHHHHHHcC-CCCCCCCCCccCCCCCC
Q 000744 342 KDFVCPITGQIFNDP----------VTLETGQTYERKAIQEWLKRG-NTTCPITRQPLCSNSLP 394 (1306)
Q Consensus 342 ~~~~CpIc~~l~~dP----------v~~~cGhtfc~~cI~~~~~~~-~~~CP~c~~~l~~~~l~ 394 (1306)
++-.|.+|.+-+.+- ..++|+|.|=..||+.|---| ..+||-|+++...+.++
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmf 286 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMF 286 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhc
Confidence 566788888755544 478999999999999998754 45899999887665554
No 464
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=93.59 E-value=22 Score=43.12 Aligned_cols=217 Identities=7% Similarity=0.099 Sum_probs=108.8
Q ss_pred EEEEEeCC---EEEEEECCCc----EEEEeCCCCccceEE-EEcccCccEEEEEEcCCCCEEEEEeCCC-----------
Q 000744 1040 LSLIHLKG---RVLSSHSDGT----IKMWDSGKRVLRLIQ-EVREHTRAVTCLYVPSSGDKLYSGSLDK----------- 1100 (1306)
Q Consensus 1040 ~sl~fspd---~LaSgs~Dg~----I~vWd~~t~~~~~i~-~l~~H~~~V~sl~fspdg~~L~Sgs~Dg----------- 1100 (1306)
....++|+ .+++-+..|. ++++|+.++ +.+. .+... ....+.|.++++.|+-...|.
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg--~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG--KFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT--EEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCC--cCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 35677775 4444455554 999999998 4443 22221 122399999988776655443
Q ss_pred cEEEEEcCCCcee--EEEeecCCCC-eEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCCEEEEEECC
Q 000744 1101 TIRVWSIKPEEIH--CLQVHNVKEA-VHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGDKLYCGCSG 1177 (1306)
Q Consensus 1101 tI~VWdi~~~~~~--~i~~~~~~~~-V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~D 1177 (1306)
.|..|++.+.... .+-....... ...+. .+.||+.+.+.... +.+
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~-------~s~d~~~l~i~~~~-------------------------~~~ 250 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVS-------RSKDGRYLFISSSS-------------------------GTS 250 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEE-------E-TTSSEEEEEEES-------------------------SSS
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEE-------ecCcccEEEEEEEc-------------------------ccc
Confidence 2677777765422 2222111111 23333 56666633221111 112
Q ss_pred -CcEEEEECCCC-----ceeEEecCcccccCCccE-EEEEEeCCcEEEEEEecCC--CEEEEEECCCCce---EEEEe-c
Q 000744 1178 -YSIQEVDLGNL-----TSTTFYAGTKKLLGKQTI-HSLHMHNGLLFAGGSSVDG--TAGKVFSISSKTA---VGSFT-T 1244 (1306)
Q Consensus 1178 -g~I~iwDl~~~-----~~~~~~~~~~~l~gh~~I-~sl~~s~~~~llas~s~Dg--~~I~IWD~~t~~~---l~~l~-~ 1244 (1306)
..+++.|+..+ ....... ....+ ..+....+..++.+. .+. +.|.-.++.+... ...+. +
T Consensus 251 ~s~v~~~d~~~~~~~~~~~~~l~~------~~~~~~~~v~~~~~~~yi~Tn-~~a~~~~l~~~~l~~~~~~~~~~~l~~~ 323 (414)
T PF02897_consen 251 ESEVYLLDLDDGGSPDAKPKLLSP------REDGVEYYVDHHGDRLYILTN-DDAPNGRLVAVDLADPSPAEWWTVLIPE 323 (414)
T ss_dssp EEEEEEEECCCTTTSS-SEEEEEE------SSSS-EEEEEEETTEEEEEE--TT-TT-EEEEEETTSTSGGGEEEEEE--
T ss_pred CCeEEEEeccccCCCcCCcEEEeC------CCCceEEEEEccCCEEEEeeC-CCCCCcEEEEecccccccccceeEEcCC
Confidence 45777888764 2222111 11122 334444555666554 221 2566667766542 22333 3
Q ss_pred CC--CEEEEEEcCc-EEEEEECCC--cEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCCC
Q 000744 1245 GI--DIQHLAVNSD-FIFTATKCG--TIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDGH 1303 (1306)
Q Consensus 1245 ~~--~V~sla~spd-~Lasgs~Dg--~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~ 1303 (1306)
.. .+..+....+ +++..-.++ .|++|++..+.....+.. ...+.|..+...+++.
T Consensus 324 ~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~----p~~g~v~~~~~~~~~~ 383 (414)
T PF02897_consen 324 DEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPL----PEAGSVSGVSGDFDSD 383 (414)
T ss_dssp SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEES----SSSSEEEEEES-TT-S
T ss_pred CCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecC----CcceEEeccCCCCCCC
Confidence 33 3778887777 555555554 678899984555555553 1224456655555544
No 465
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=93.57 E-value=3.5 Score=50.14 Aligned_cols=176 Identities=12% Similarity=0.037 Sum_probs=91.4
Q ss_pred CCCEEEEEEeCC---EEEEE-ECC--CcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEE-EEeCCCcEEEE--E
Q 000744 1036 NGEVLSLIHLKG---RVLSS-HSD--GTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLY-SGSLDKTIRVW--S 1106 (1306)
Q Consensus 1036 ~~~V~sl~fspd---~LaSg-s~D--g~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~-Sgs~DgtI~VW--d 1106 (1306)
...+..-.|+++ ..+.. ... ..+.++|++++....+..+.++.. .-.|+|||++|+ +...||...|| |
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~---~P~fspDG~~l~f~~~rdg~~~iy~~d 268 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNG---APAFSPDGSKLAFSSSRDGSPDIYLMD 268 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccC---CccCCCCCCEEEEEECCCCCccEEEEc
Confidence 344555667764 11121 122 459999999886566666666554 457999998665 55667765555 6
Q ss_pred cCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCCEEEEEECCCc--EEEEE
Q 000744 1107 IKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGDKLYCGCSGYS--IQEVD 1184 (1306)
Q Consensus 1107 i~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~Dg~--I~iwD 1184 (1306)
+.++.... ..+...+.. --.++|||+.| +++.+..|. |.++|
T Consensus 269 l~~~~~~~---Lt~~~gi~~------~Ps~spdG~~i---------------------------vf~Sdr~G~p~I~~~~ 312 (425)
T COG0823 269 LDGKNLPR---LTNGFGINT------SPSWSPDGSKI---------------------------VFTSDRGGRPQIYLYD 312 (425)
T ss_pred CCCCccee---cccCCcccc------CccCCCCCCEE---------------------------EEEeCCCCCcceEEEC
Confidence 65553211 221122211 12377888743 223333444 55666
Q ss_pred CCCCceeEEecCcccccCCccEEEEEEeCCcEEEEEEecCCCE--EEEEECCCCceEEEEecCCCEEEEEEcCc
Q 000744 1185 LGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLLFAGGSSVDGTA--GKVFSISSKTAVGSFTTGIDIQHLAVNSD 1256 (1306)
Q Consensus 1185 l~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~s~Dg~~--I~IWD~~t~~~l~~l~~~~~V~sla~spd 1256 (1306)
+..+..... . ..+... ..-.|+|++.+++..+..++. |.+.|..++.....+........-.|.++
T Consensus 313 ~~g~~~~ri-T----~~~~~~-~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~n 380 (425)
T COG0823 313 LEGSQVTRL-T----FSGGGN-SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPN 380 (425)
T ss_pred CCCCceeEe-e----ccCCCC-cCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCC
Confidence 666554321 1 111111 145567776655554433323 66667666554555554333444455555
No 466
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=93.55 E-value=32 Score=44.79 Aligned_cols=266 Identities=11% Similarity=0.139 Sum_probs=151.1
Q ss_pred cccccccc----cEEEEEeCCCcEEEEeCCCceEE--------cccCCCCEEEEEEeC------CEEEEEE---CCCcEE
Q 000744 1001 SAVVTDIQ----KALMNLSSVNATELWHCNEVTEL--------DSSTNGEVLSLIHLK------GRVLSSH---SDGTIK 1059 (1306)
Q Consensus 1001 s~~V~~i~----~~Lasgs~Dg~I~IWd~~~~~~i--------~~~H~~~V~sl~fsp------d~LaSgs---~Dg~I~ 1059 (1306)
.++++++. .+|..||.-|.=.+-.+.+.... ....-++|.++..-. ..++|++ .||+++
T Consensus 306 ~siassi~~L~ng~lFvGS~~gdSqLi~L~~e~d~gsy~~ilet~~NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLR 385 (1096)
T KOG1897|consen 306 TSIASSINYLDNGVLFVGSRFGDSQLIKLNTEPDVGSYVVILETFVNLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLR 385 (1096)
T ss_pred cchhhhhhcccCceEEEeccCCceeeEEccccCCCCchhhhhhhcccccceeeEEEEeccccCCceEEEEeCCCCCCcEE
Confidence 44555554 78999998776666655432111 122356788887653 2677765 589999
Q ss_pred EEeCCCCcc-ceEEEEcccCccEEEEE--EcCC-CCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEe----CC
Q 000744 1060 MWDSGKRVL-RLIQEVREHTRAVTCLY--VPSS-GDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTA----NA 1131 (1306)
Q Consensus 1060 vWd~~t~~~-~~i~~l~~H~~~V~sl~--fspd-g~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~----~~ 1131 (1306)
+....-+-- .-...+.| -..++.+. +.++ .++++.+-.+-| ++..+... ..-....+.......+.. .+
T Consensus 386 iiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf~~eT-rvl~i~~e-~ee~~~~gf~~~~~Tif~S~i~g~ 462 (1096)
T KOG1897|consen 386 IIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSFISET-RVLNISEE-VEETEDPGFSTDEQTIFCSTINGN 462 (1096)
T ss_pred EEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEeccce-EEEEEccc-eEEeccccccccCceEEEEccCCc
Confidence 987654310 11223344 45678877 5442 235555444433 56666543 222222222233333332 33
Q ss_pred cEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCC--EEEEEECCCcEEEEECCCCceeEEecCcccccCCccEEEE
Q 000744 1132 EIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGD--KLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSL 1209 (1306)
Q Consensus 1132 ~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d--~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl 1209 (1306)
.++-+.+++ |++++..+...-|.....++....+-+ .++.++.++.+...++..+....+.. +.+.. .|.|+
T Consensus 463 ~lvQvTs~~--iRl~ss~~~~~~W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~--~~~e~--evaCL 536 (1096)
T KOG1897|consen 463 QLVQVTSNS--IRLVSSAGLRSEWRPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSH--KEFEY--EVACL 536 (1096)
T ss_pred eEEEEeccc--EEEEcchhhhhcccCCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeee--heecc--eeEEE
Confidence 444455443 777777777888888777776666644 57788888888888887766333211 11111 78889
Q ss_pred EEeC---Cc---EEEEEEecCCCEEEEEECCCCceEEEEe--cCC---CEEEEEEcCc--EEEEEECCCcEEEE--ECCC
Q 000744 1210 HMHN---GL---LFAGGSSVDGTAGKVFSISSKTAVGSFT--TGI---DIQHLAVNSD--FIFTATKCGTIEVW--LKER 1274 (1306)
Q Consensus 1210 ~~s~---~~---~llas~s~Dg~~I~IWD~~t~~~l~~l~--~~~---~V~sla~spd--~Lasgs~Dg~I~IW--d~~t 1274 (1306)
.++| +. .+++.|.++.-.+.+.-..+...+.... ... .|.-..|-.| +|.++..||.+.-| |..+
T Consensus 537 Disp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~t 616 (1096)
T KOG1897|consen 537 DISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINT 616 (1096)
T ss_pred ecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEccc
Confidence 8873 22 3677777776444555455554444332 211 2444445554 99999999998765 4444
Q ss_pred C
Q 000744 1275 V 1275 (1306)
Q Consensus 1275 g 1275 (1306)
|
T Consensus 617 g 617 (1096)
T KOG1897|consen 617 G 617 (1096)
T ss_pred c
Confidence 4
No 467
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.53 E-value=2.5 Score=54.76 Aligned_cols=75 Identities=17% Similarity=0.251 Sum_probs=57.4
Q ss_pred CCCEEEEEEeCCEEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 000744 1036 NGEVLSLIHLKGRVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEE 1111 (1306)
Q Consensus 1036 ~~~V~sl~fspd~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~ 1111 (1306)
...+.+.+.-...++.|+..|.|-..|+.+.- .+...-..-.++|++++|+.+|..++.|-.+|.|.+||+..++
T Consensus 89 ~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL-~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k 163 (1206)
T KOG2079|consen 89 AAGVISSAIVVVPIVIGTSHGHVLLSDMTGNL-GPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAK 163 (1206)
T ss_pred CcceeeeeeeeeeEEEEcCchhhhhhhhhccc-chhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCc
Confidence 33455555555688999999999998887641 2222223346799999999999999999999999999999975
No 468
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.50 E-value=0.025 Score=65.56 Aligned_cols=45 Identities=16% Similarity=0.461 Sum_probs=37.9
Q ss_pred CcccCcccccccCCcE----EcCCCCcccHHHHHHHHHcCCCCCCCCCCccC
Q 000744 342 KDFVCPITGQIFNDPV----TLETGQTYERKAIQEWLKRGNTTCPITRQPLC 389 (1306)
Q Consensus 342 ~~~~CpIc~~l~~dPv----~~~cGhtfc~~cI~~~~~~~~~~CP~c~~~l~ 389 (1306)
+--.||+|++-|.+-+ ++.|-|+|=..|+..|+.. +||+||....
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~---scpvcR~~q~ 222 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS---SCPVCRYCQS 222 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecccccchHHHhhcccC---cChhhhhhcC
Confidence 4458999999999876 5679999999999999854 7999997654
No 469
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.45 E-value=0.66 Score=54.32 Aligned_cols=89 Identities=15% Similarity=0.188 Sum_probs=54.3
Q ss_pred HHhhCCchHHHHHHhhcCCccccchhcccCchHHHHHHHHHHHccCCCCCchhhh-------hHhhcCCCHHHHHhhc--
Q 000744 607 QLSAHEFIPSLVQLVLNKTEEFDELQFVMEPKDAAIEMLEQILMGGDKKSRSITA-------LSLISANGIPALIKCL-- 677 (1306)
Q Consensus 607 ~i~~~g~i~~Lv~ll~~g~~~~~~~~~~~~~k~aa~~lL~~l~~~~~~~~~~~n~-------~~i~~~g~i~~Lv~~l-- 677 (1306)
..++..+|++|++||..-+ .|-|++.++.|-..-|..+-+++- .++|+.+.++.||+.+
T Consensus 120 ~lveln~V~slL~LLgHeN------------tDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveR 187 (536)
T KOG2734|consen 120 ILVELNAVQSLLELLGHEN------------TDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVER 187 (536)
T ss_pred HHHHhccHHHHHHHhcCCC------------chhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHH
Confidence 3467789999999998876 345666666665445555533322 2778888889999887
Q ss_pred --CChhHH----HHHHHHHHhhhhccchhHHHHHHh
Q 000744 678 --DRVEVR----RSIVSILLCCMHADKSCKTLIAKR 707 (1306)
Q Consensus 678 --~~~~~~----~~~~~~L~~~~~~~~~~r~~i~~~ 707 (1306)
+++++. .+..+++-+.+..+...-..+++.
T Consensus 188 LdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~ 223 (536)
T KOG2734|consen 188 LDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQ 223 (536)
T ss_pred hhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHh
Confidence 333333 233444444555444444444444
No 470
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.41 E-value=6.6 Score=49.49 Aligned_cols=294 Identities=18% Similarity=0.209 Sum_probs=180.1
Q ss_pred hChhhHHHhhcCCCCHHHHHHHHHHHHHHhhhcCCCcccc-cccccccchHHHHHHHhcCCcHHHHHHHHHHHHHHhccC
Q 000744 488 NGLKPYVTCLCTSENLQECETAVLAIARLWKESKGDPGVH-AYLLKPTIINGFAEILSASLSREVLRTSVYILSELMVAD 566 (1306)
Q Consensus 488 ~~~~~~l~~Ll~s~~~~~~e~Av~~i~~L~~~~~~~~~~~-~~i~~~~~I~~Lv~~L~~~~~~~~~e~Av~~L~~L~s~~ 566 (1306)
.+.+.+|...+.-.|...+..|+.-|..|-...+- +.+ +.++-|-+|..||.+|..+ .+-+|..|+..|.+| +++
T Consensus 121 qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~--e~q~~ll~~P~gIS~lmdlL~Ds-rE~IRNe~iLlL~eL-~k~ 196 (970)
T KOG0946|consen 121 QDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPT--ELQDALLVSPMGISKLMDLLRDS-REPIRNEAILLLSEL-VKD 196 (970)
T ss_pred chhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCH--HHHHHHHHCchhHHHHHHHHhhh-hhhhchhHHHHHHHH-Hcc
Confidence 34556666667777888888888888777776552 232 4556799999999999998 566788889999999 667
Q ss_pred ccccccccccCCchHHHHHHHhc-C-h------HHHHHHHhcc----CCCHHHHhhCCchHHHHHHhhcCCccccchhcc
Q 000744 567 ESVGDILTSVDSDFDCLAALLKN-G-L------GEAAVLIYQL----RPAFAQLSAHEFIPSLVQLVLNKTEEFDELQFV 634 (1306)
Q Consensus 567 ~~~~~~I~~~~~~i~~Lv~lLk~-g-~------~~Aa~aL~~L----~~~~~~i~~~g~i~~Lv~ll~~g~~~~~~~~~~ 634 (1306)
....+.|+..+.+++.|..++.. | . +|+...|.|| .+|-.-..+.+-||-|.+||..-...... .+-
T Consensus 197 n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~E-v~~ 275 (970)
T KOG0946|consen 197 NSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGE-VFG 275 (970)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcc-ccc
Confidence 67888888889999999999986 3 1 8899999888 23888889999999999777653311110 011
Q ss_pred cC-chHH----HHHHHHHHHccCCCCCc-hhhhhHhhcCCCHHHHHhhc---C-ChhHHHHHHHHHHhhhhccchhHHHH
Q 000744 635 ME-PKDA----AIEMLEQILMGGDKKSR-SITALSLISANGIPALIKCL---D-RVEVRRSIVSILLCCMHADKSCKTLI 704 (1306)
Q Consensus 635 ~~-~k~a----a~~lL~~l~~~~~~~~~-~~n~~~i~~~g~i~~Lv~~l---~-~~~~~~~~~~~L~~~~~~~~~~r~~i 704 (1306)
+. .|.+ |..++..|++-++-..+ +.|.+++++.+++..|...+ | +.+-..-++-.+...++++..+-...
T Consensus 276 W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F 355 (970)
T KOG0946|consen 276 WSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEF 355 (970)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHH
Confidence 21 2333 33444445544443333 46667999999999999998 3 23333333334455667776676666
Q ss_pred HHh--cc----cchhhhhhh----c-CCchhHhHHHHHHHHHHhcch---hhhHHHHHHHhhh-cC-CcchHHHHHHHhh
Q 000744 705 AKR--IE----LSHVLDLFH----D-GNDSVRGICINFLSELVLLNR---RTFSNQILQVIRD-EG-SFSTMHTFLVYLQ 768 (1306)
Q Consensus 705 ~~~--~~----~~~l~~ll~----~-g~~~~k~~a~~~L~~L~~~~~---~~~~~~~l~~i~~-~g-~~~~m~~ll~~l~ 768 (1306)
++- -. .|.++=|+- + -...-|+.....|...+.-|. +.+...++..--+ -+ .+.+=..++..|-
T Consensus 356 ~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~~~l~tllp~~~nst~Nsl~ag~l~~~~l~ 435 (970)
T KOG0946|consen 356 ADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQRKFLKTLLPSSTNSTSNSLSAGQLLLVGLS 435 (970)
T ss_pred hhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHHHHHHHHhhhhccccccchhhhhHHHHhhc
Confidence 662 22 223333332 2 233446666666656655553 2222222222111 12 4444444454444
Q ss_pred cCCCcchhhHHHHHHhhh
Q 000744 769 MAPMEQQPATASLLLQLD 786 (1306)
Q Consensus 769 ~~~~~~~~~~A~~l~~l~ 786 (1306)
+..+=+-=..|.+|.++-
T Consensus 436 s~d~~~nwFt~v~lmh~l 453 (970)
T KOG0946|consen 436 STDSLDNWFTAVILMHLL 453 (970)
T ss_pred cchHHHHHHHHHHHHHHH
Confidence 433333334455554443
No 471
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=93.24 E-value=0.21 Score=36.25 Aligned_cols=35 Identities=20% Similarity=0.422 Sum_probs=28.2
Q ss_pred ceEEEEe-cCCCEEEEEEcCc--EEEEEECCCcEEEEE
Q 000744 1237 TAVGSFT-TGIDIQHLAVNSD--FIFTATKCGTIEVWL 1271 (1306)
Q Consensus 1237 ~~l~~l~-~~~~V~sla~spd--~Lasgs~Dg~I~IWd 1271 (1306)
++...+. +...|+++.|+++ ++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3445555 4557999999987 999999999999996
No 472
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=93.19 E-value=0.057 Score=59.55 Aligned_cols=49 Identities=20% Similarity=0.373 Sum_probs=38.6
Q ss_pred cCccccc-ccCCcE----EcCCCCcccHHHHHHHHHcCCCCCCCCCCccCCCCC
Q 000744 345 VCPITGQ-IFNDPV----TLETGQTYERKAIQEWLKRGNTTCPITRQPLCSNSL 393 (1306)
Q Consensus 345 ~CpIc~~-l~~dPv----~~~cGhtfc~~cI~~~~~~~~~~CP~c~~~l~~~~l 393 (1306)
.||+|+- ....|- +-+|||+.|..|....+..|...||.|+..+....+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nf 55 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNF 55 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhccc
Confidence 4888875 333443 238999999999999999999999999988765444
No 473
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.15 E-value=5.2 Score=52.52 Aligned_cols=312 Identities=16% Similarity=0.178 Sum_probs=171.3
Q ss_pred hHHHhhcCCCCHHHHHHHHHHHHHHhhhcCCCccccccc--ccccchHHHHHHHhcCCcHHHHHHHHHHHHHHhccCccc
Q 000744 492 PYVTCLCTSENLQECETAVLAIARLWKESKGDPGVHAYL--LKPTIINGFAEILSASLSREVLRTSVYILSELMVADESV 569 (1306)
Q Consensus 492 ~~l~~Ll~s~~~~~~e~Av~~i~~L~~~~~~~~~~~~~i--~~~~~I~~Lv~~L~~~~~~~~~e~Av~~L~~L~s~~~~~ 569 (1306)
+.+..-+...+...+..|+.++.-++...+++...+... .=|+.|..+-+++..+ +..+...+..+|-+|+...+..
T Consensus 162 ~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~-d~~~a~~~l~~l~El~e~~pk~ 240 (1075)
T KOG2171|consen 162 RLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDG-DDDAAKSALEALIELLESEPKL 240 (1075)
T ss_pred HHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhcc-chHHHHHHHHHHHHHHhhchHH
Confidence 333333444444488888999888888776443222121 2244555555555666 5555566666666665444311
Q ss_pred cccccccCCchHHHHHHHhcCh------HHHHHHHhccCCCHHHH------hhCCchHHHHHHhhcCCccc-------cc
Q 000744 570 GDILTSVDSDFDCLAALLKNGL------GEAAVLIYQLRPAFAQL------SAHEFIPSLVQLVLNKTEEF-------DE 630 (1306)
Q Consensus 570 ~~~I~~~~~~i~~Lv~lLk~g~------~~Aa~aL~~L~~~~~~i------~~~g~i~~Lv~ll~~g~~~~-------~~ 630 (1306)
-.... ...|..-.++-++-. ..|--.|-.++-+.+.+ .-...+|.++.++.+..... .+
T Consensus 241 l~~~l--~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~d 318 (1075)
T KOG2171|consen 241 LRPHL--SQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLD 318 (1075)
T ss_pred HHHHH--HHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccc
Confidence 00000 011111122223211 33444444443332222 22456777888887766330 00
Q ss_pred hhcccCchHHHHHHHHHHHccCCCCCchhhhhHhhcCCCHHHHHhhc------CChhHHHHHHHHHHhhhhccchhHHHH
Q 000744 631 LQFVMEPKDAAIEMLEQILMGGDKKSRSITALSLISANGIPALIKCL------DRVEVRRSIVSILLCCMHADKSCKTLI 704 (1306)
Q Consensus 631 ~~~~~~~k~aa~~lL~~l~~~~~~~~~~~n~~~i~~~g~i~~Lv~~l------~~~~~~~~~~~~L~~~~~~~~~~r~~i 704 (1306)
-.---+|+..|.-.|..+..+-.. .-.+|++++.+ .+..+|.+++.+|. ..++|..+.++
T Consensus 319 ed~~~~~~~~A~~~lDrlA~~L~g------------~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als--~i~EGc~~~m~ 384 (1075)
T KOG2171|consen 319 EDDEETPYRAAEQALDRLALHLGG------------KQVLPPLFEALEAMLQSTEWKERHAALLALS--VIAEGCSDVMI 384 (1075)
T ss_pred cccccCcHHHHHHHHHHHHhcCCh------------hhehHHHHHHHHHHhcCCCHHHHHHHHHHHH--HHHcccHHHHH
Confidence 111346888888888888755310 11356666666 35555555555554 34455556666
Q ss_pred HH-hcccchhhhhhhcCCchhHhHHHHHHHHHHhcchhhhHHHHHHHhhhc--CCcchHHHHHHHhhcCCCc--chhhHH
Q 000744 705 AK-RIELSHVLDLFHDGNDSVRGICINFLSELVLLNRRTFSNQILQVIRDE--GSFSTMHTFLVYLQMAPME--QQPATA 779 (1306)
Q Consensus 705 ~~-~~~~~~l~~ll~~g~~~~k~~a~~~L~~L~~~~~~~~~~~~l~~i~~~--g~~~~m~~ll~~l~~~~~~--~~~~~A 779 (1306)
.. .--++-++-.|.+..++.|-.|..++.++.- .+.-++.+. .-+++ +|.++-..+.. .+..+|
T Consensus 385 ~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~st--------dl~p~iqk~~~e~l~~---aL~~~ld~~~~~rV~ahAa 453 (1075)
T KOG2171|consen 385 GNLPKILPIVLNGLNDPHPRVRYAALNAIGQMST--------DLQPEIQKKHHERLPP---ALIALLDSTQNVRVQAHAA 453 (1075)
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhh--------hhcHHHHHHHHHhccH---HHHHHhcccCchHHHHHHH
Confidence 64 2334455668889999999999999977731 111111111 11222 33333333333 344556
Q ss_pred HHHHhhhcccCCccccccHHHHHHHHHHHHhcCCCchHHHHHHHHHHhccce
Q 000744 780 SLLLQLDLLVEPRKMSMYREEAVEALIEALRRKDFPNSQMMALDALLSLTGR 831 (1306)
Q Consensus 780 ~~l~~l~~l~~~~~~~~~reeai~~l~~~l~~~~~~~~q~~aa~~l~~l~g~ 831 (1306)
..+..+----......-|=.+-++.++..|..++.+.+|+++..||...+..
T Consensus 454 ~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~A 505 (1075)
T KOG2171|consen 454 AALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADA 505 (1075)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 6665544333445667788889998888999998889999998888876544
No 474
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.11 E-value=0.053 Score=62.76 Aligned_cols=49 Identities=18% Similarity=0.447 Sum_probs=40.8
Q ss_pred CCcccCcccccccCCcE-----E---cCCCCcccHHHHHHHHHcC------CCCCCCCCCccC
Q 000744 341 PKDFVCPITGQIFNDPV-----T---LETGQTYERKAIQEWLKRG------NTTCPITRQPLC 389 (1306)
Q Consensus 341 ~~~~~CpIc~~l~~dPv-----~---~~cGhtfc~~cI~~~~~~~------~~~CP~c~~~l~ 389 (1306)
-++..|-||++...++. . ..|-|+||..||..|-... ...||.||....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 57899999999988887 3 5699999999999999643 367999997754
No 475
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=93.02 E-value=17 Score=47.61 Aligned_cols=221 Identities=9% Similarity=0.059 Sum_probs=0.0
Q ss_pred eCCCceEEcccCCCCE--------EEEEEeC----CEEEEEECCCcEEEEeCCCCccceEEEEcccCcc--------EEE
Q 000744 1024 HCNEVTELDSSTNGEV--------LSLIHLK----GRVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRA--------VTC 1083 (1306)
Q Consensus 1024 d~~~~~~i~~~H~~~V--------~sl~fsp----d~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~--------V~s 1083 (1306)
|+.+.+.....|.+.+ .....+| +.++.++.++.|.-.|..+| +.+..+.-.... ...
T Consensus 160 NV~~L~~aWt~~tGd~~~~~~~~~~~~e~TPlvvgg~lYv~t~~~~V~ALDa~TG--k~lW~~d~~~~~~~~~~~~~cRG 237 (764)
T TIGR03074 160 NVGNLKVAWTYHTGDLKTPDDPGEATFQATPLKVGDTLYLCTPHNKVIALDAATG--KEKWKFDPKLKTEAGRQHQTCRG 237 (764)
T ss_pred cccCceEEEEEECCCccccccccccccccCCEEECCEEEEECCCCeEEEEECCCC--cEEEEEcCCCCcccccccccccc
Q ss_pred EEEcC----------------CCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCe-------------EEEEeCCcEE
Q 000744 1084 LYVPS----------------SGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAV-------------HELTANAEIA 1134 (1306)
Q Consensus 1084 l~fsp----------------dg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V-------------~sl~~~~~~v 1134 (1306)
+.+.. .+..++.++.|+.+.-.|.+++ +....+...+.| ..+.
T Consensus 238 vay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiALDA~TG--k~~W~fg~~G~vdl~~~~g~~~~g~~~~t------ 309 (764)
T TIGR03074 238 VSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIALDADTG--KLCEDFGNNGTVDLTAGMGTTPPGYYYPT------ 309 (764)
T ss_pred eEEecCCcccccccccccccccCCEEEEecCCCeEEEEECCCC--CEEEEecCCCceeeecccCcCCCcccccc------
Q ss_pred EEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCCEEEEEEC----------CCcEEEEECCCCceeEEec---------
Q 000744 1135 CFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGDKLYCGCS----------GYSIQEVDLGNLTSTTFYA--------- 1195 (1306)
Q Consensus 1135 ~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~----------Dg~I~iwDl~~~~~~~~~~--------- 1195 (1306)
..-.+.++.+++|+. +|.|+-+|.++|+.+-.+.
T Consensus 310 ---------------------------s~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g~p~~~~~ 362 (764)
T TIGR03074 310 ---------------------------SPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPGNPDPTAP 362 (764)
T ss_pred ---------------------------cCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecCCCCcccC
Q ss_pred --CcccccCCc----cEEEEEEeCCcEEEEEE----------------ecCCCEEEEEECCCCceEEEEe--cCCC----
Q 000744 1196 --GTKKLLGKQ----TIHSLHMHNGLLFAGGS----------------SVDGTAGKVFSISSKTAVGSFT--TGID---- 1247 (1306)
Q Consensus 1196 --~~~~l~gh~----~I~sl~~s~~~~llas~----------------s~Dg~~I~IWD~~t~~~l~~l~--~~~~---- 1247 (1306)
......... ...++.-..+..|+.++ -..+ +|.-.|.+||+....++ ||.-
T Consensus 363 ~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~-slvALD~~TGk~~W~~Q~~~hD~WD~D 441 (764)
T TIGR03074 363 PAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSS-SLVALDATTGKERWVFQTVHHDLWDMD 441 (764)
T ss_pred CCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccc-eEEEEeCCCCceEEEecccCCcccccc
Q ss_pred ------EEEEEE-cCc---EEEEEECCCcEEEEECCCCeEEEEEe
Q 000744 1248 ------IQHLAV-NSD---FIFTATKCGTIEVWLKERVTRVASVK 1282 (1306)
Q Consensus 1248 ------V~sla~-spd---~Lasgs~Dg~I~IWd~~tg~~l~~l~ 1282 (1306)
+..+.. ... .++.++.+|.+++.|.++|+.+...+
T Consensus 442 ~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 442 VPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred ccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
No 476
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.02 E-value=0.22 Score=63.68 Aligned_cols=95 Identities=20% Similarity=0.321 Sum_probs=71.3
Q ss_pred cEEEEEeCCCcEEEEeCCCc-eEEc--ccCCCCEEEEEEeCC--EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEE
Q 000744 1009 KALMNLSSVNATELWHCNEV-TELD--SSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTC 1083 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~~-~~i~--~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~s 1083 (1306)
..++.|++.|.|-..|..+. .... ..-.++|++++|+.+ .++.|-.+|.|.+||+..+ +.++.+..|..++++
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~--k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA--KILKVITEHGAPVTG 177 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC--cceeeeeecCCccce
Confidence 56889999999988887752 2211 223789999999986 8889999999999999998 778888777666555
Q ss_pred E---EEcCCCCEEEEEeCCCcEEEEEc
Q 000744 1084 L---YVPSSGDKLYSGSLDKTIRVWSI 1107 (1306)
Q Consensus 1084 l---~fspdg~~L~Sgs~DgtI~VWdi 1107 (1306)
+ .+..++..++++...|. +|..
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 4 44445667888877775 5654
No 477
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.94 E-value=0.065 Score=62.53 Aligned_cols=53 Identities=17% Similarity=0.359 Sum_probs=40.5
Q ss_pred CCCCCcccCccccccc-----------------CCcEEcCCCCcccHHHHHHHHHcCCCCCCCCCCccCC
Q 000744 338 SRPPKDFVCPITGQIF-----------------NDPVTLETGQTYERKAIQEWLKRGNTTCPITRQPLCS 390 (1306)
Q Consensus 338 ~~~~~~~~CpIc~~l~-----------------~dPv~~~cGhtfc~~cI~~~~~~~~~~CP~c~~~l~~ 390 (1306)
.-+...--|+||+.-. ++-+.++|-|-|-+.|+++|++.-+-.||+||.+++.
T Consensus 566 ~~~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 566 AFVRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred chhhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 3355566899998632 1234569999999999999999656689999998753
No 478
>PTZ00429 beta-adaptin; Provisional
Probab=92.91 E-value=6.3 Score=51.25 Aligned_cols=113 Identities=19% Similarity=0.122 Sum_probs=58.0
Q ss_pred hHHHhhcCCCCHHHHHHHHHHHHHHhhhcCCCcccccccccccchHHHHHHHhcCCcHHHHHHHHHHHHHHhccCccccc
Q 000744 492 PYVTCLCTSENLQECETAVLAIARLWKESKGDPGVHAYLLKPTIINGFAEILSASLSREVLRTSVYILSELMVADESVGD 571 (1306)
Q Consensus 492 ~~l~~Ll~s~~~~~~e~Av~~i~~L~~~~~~~~~~~~~i~~~~~I~~Lv~~L~~~~~~~~~e~Av~~L~~L~s~~~~~~~ 571 (1306)
+-+.++..+.+.+.+.-.-.-+.++++..++. .. -+|+.|..=|.+. ++.+|-.|+..|..+ .
T Consensus 71 ~dVvk~~~S~d~elKKLvYLYL~~ya~~~pel----al----LaINtl~KDl~d~-Np~IRaLALRtLs~I---r----- 133 (746)
T PTZ00429 71 VDVVKLAPSTDLELKKLVYLYVLSTARLQPEK----AL----LAVNTFLQDTTNS-SPVVRALAVRTMMCI---R----- 133 (746)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHcccChHH----HH----HHHHHHHHHcCCC-CHHHHHHHHHHHHcC---C-----
Confidence 33444566666666655555555554433211 01 1255555555554 666677777666654 1
Q ss_pred cccccCCchHHHH----HHHhcCh----HHHHHHHhccCC-CHHHHhhCCchHHHHHHhhcCC
Q 000744 572 ILTSVDSDFDCLA----ALLKNGL----GEAAVLIYQLRP-AFAQLSAHEFIPSLVQLVLNKT 625 (1306)
Q Consensus 572 ~I~~~~~~i~~Lv----~lLk~g~----~~Aa~aL~~L~~-~~~~i~~~g~i~~Lv~ll~~g~ 625 (1306)
...-++.++ +.|.... +.||.+++.|-. ++..+...|+++-|.++|.+.+
T Consensus 134 ----~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~d 192 (746)
T PTZ00429 134 ----VSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNN 192 (746)
T ss_pred ----cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCC
Confidence 122233333 3333222 566666666644 4444445667777777766555
No 479
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.80 E-value=0.076 Score=56.77 Aligned_cols=37 Identities=30% Similarity=0.390 Sum_probs=33.0
Q ss_pred CCCCcccCcccccccCCcEEcCCCCcccHHHHHHHHH
Q 000744 339 RPPKDFVCPITGQIFNDPVTLETGQTYERKAIQEWLK 375 (1306)
Q Consensus 339 ~~~~~~~CpIc~~l~~dPv~~~cGhtfc~~cI~~~~~ 375 (1306)
.+.+.-.|.+|++.++|||+++.||-|||.||-+++-
T Consensus 39 siK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 39 SIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred ccCCcceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 4556668899999999999999999999999999875
No 480
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=92.67 E-value=4.6 Score=45.36 Aligned_cols=119 Identities=13% Similarity=0.126 Sum_probs=79.0
Q ss_pred CCeEEEEE-eCCEEE-EEECCC--cEEEEECCCCceeEEecCcccccCCccEEEEEEeCCcEEEEEEecCCCEEEEEECC
Q 000744 1159 KHVKSLVM-TGDKLY-CGCSGY--SIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLLFAGGSSVDGTAGKVFSIS 1234 (1306)
Q Consensus 1159 ~~V~sl~~-s~d~L~-sgs~Dg--~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~s~Dg~~I~IWD~~ 1234 (1306)
.....+.| .++.|+ +.+.-| .|+.+|+.+++......-.... .=-.+...++..+..+- .++ ...+||..
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~----FgEGit~~~d~l~qLTW-k~~-~~f~yd~~ 118 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRY----FGEGITILGDKLYQLTW-KEG-TGFVYDPN 118 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT------EEEEEEETTEEEEEES-SSS-EEEEEETT
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccc----cceeEEEECCEEEEEEe-cCC-eEEEEccc
Confidence 44556666 455544 444444 6999999999877654322222 33456667888888875 354 89999999
Q ss_pred CCceEEEEecCCCEEEEEEcCcEEEEEECCCcEEEEECCCCeEEEEEec
Q 000744 1235 SKTAVGSFTTGIDIQHLAVNSDFIFTATKCGTIEVWLKERVTRVASVKA 1283 (1306)
Q Consensus 1235 t~~~l~~l~~~~~V~sla~spd~Lasgs~Dg~I~IWd~~tg~~l~~l~~ 1283 (1306)
+.+.+.++...+.=+.++...+.|+.......|+++|..+.+..+++..
T Consensus 119 tl~~~~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V 167 (264)
T PF05096_consen 119 TLKKIGTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQV 167 (264)
T ss_dssp TTEEEEEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-
T ss_pred cceEEEEEecCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEE
Confidence 9999999987666677887777666666677899999999888887765
No 481
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.57 E-value=0.51 Score=56.31 Aligned_cols=122 Identities=14% Similarity=0.140 Sum_probs=81.2
Q ss_pred EEEEECCCcEEEEECCCCceeEEecCcccccCCccEEEEEEe---------CCcEEEEEEecCCCEEEEEECCCCc--eE
Q 000744 1171 LYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMH---------NGLLFAGGSSVDGTAGKVFSISSKT--AV 1239 (1306)
Q Consensus 1171 L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s---------~~~~llas~s~Dg~~I~IWD~~t~~--~l 1239 (1306)
+.++..-..++-.|+..|+.+..+.-+. .|+-+.+. +.+.++.-+ |. .|.=||.+-.. .+
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~------di~mv~~t~d~K~~Ql~~e~TlvGLs--~n-~vfriDpRv~~~~kl 419 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFED------DINMVDITPDFKFAQLTSEQTLVGLS--DN-SVFRIDPRVQGKNKL 419 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccC------CcceeeccCCcchhcccccccEEeec--CC-ceEEecccccCccee
Confidence 4556666778888888888887665332 34444443 334555443 55 68899986422 12
Q ss_pred E-----EEecCCCEEEEEEcCc-EEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcCCCCccC
Q 000744 1240 G-----SFTTGIDIQHLAVNSD-FIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGVDGHPYK 1306 (1306)
Q Consensus 1240 ~-----~l~~~~~V~sla~spd-~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSpdg~~La 1306 (1306)
. .+.......|.+-..+ +|+.||.+|.|++||. .+..-++.- ++-..+|..|..+.||++|+
T Consensus 420 ~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAl----PgLG~~I~hVdvtadGKwil 487 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTAL----PGLGDAIKHVDVTADGKWIL 487 (644)
T ss_pred eeeeccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcc----cccCCceeeEEeeccCcEEE
Confidence 1 1223455888888877 9999999999999998 555544443 12336899999999999874
No 482
>PHA03098 kelch-like protein; Provisional
Probab=92.47 E-value=4.2 Score=51.32 Aligned_cols=96 Identities=13% Similarity=0.037 Sum_probs=48.6
Q ss_pred CcEEEEECCCCceeEEecCcccccCCccEEEEEEeCCcEEEEEEecCC------CEEEEEECCCCceEE--EEec-CCCE
Q 000744 1178 YSIQEVDLGNLTSTTFYAGTKKLLGKQTIHSLHMHNGLLFAGGSSVDG------TAGKVFSISSKTAVG--SFTT-GIDI 1248 (1306)
Q Consensus 1178 g~I~iwDl~~~~~~~~~~~~~~l~gh~~I~sl~~s~~~~llas~s~Dg------~~I~IWD~~t~~~l~--~l~~-~~~V 1248 (1306)
..+..||..+++-...-. +.....-.++...++..++.+|..+. ..+.+||..+++-.. .+.. ....
T Consensus 406 ~~v~~yd~~t~~W~~~~~----~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~ 481 (534)
T PHA03098 406 KTVECFSLNTNKWSKGSP----LPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINA 481 (534)
T ss_pred ceEEEEeCCCCeeeecCC----CCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccc
Confidence 457888887654322111 11111122344557777777763221 138889987754322 1211 1112
Q ss_pred EEEEEcCcEEEEEECC-----CcEEEEECCCCeE
Q 000744 1249 QHLAVNSDFIFTATKC-----GTIEVWLKERVTR 1277 (1306)
Q Consensus 1249 ~sla~spd~Lasgs~D-----g~I~IWd~~tg~~ 1277 (1306)
..+.+...+++.|+.+ +.|.+||..+.+.
T Consensus 482 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 482 SLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred eEEEECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 2233333355566543 5788999887643
No 483
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.36 E-value=3.8 Score=53.79 Aligned_cols=300 Identities=15% Similarity=0.106 Sum_probs=171.5
Q ss_pred hChhhHHHhhcCCCCHHHHHHHHHHHHHHhhhcCCCcccccccccccchHHHHHHHhcCC---cHHHHHHHHHHHHHHhc
Q 000744 488 NGLKPYVTCLCTSENLQECETAVLAIARLWKESKGDPGVHAYLLKPTIINGFAEILSASL---SREVLRTSVYILSELMV 564 (1306)
Q Consensus 488 ~~~~~~l~~Ll~s~~~~~~e~Av~~i~~L~~~~~~~~~~~~~i~~~~~I~~Lv~~L~~~~---~~~~~e~Av~~L~~L~s 564 (1306)
.++.+.+..-..|++...+|.|+..+..+...-++.- .+.++.|+.++..+- +..+|-.|+.++..++.
T Consensus 117 Pell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~--------~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~ 188 (1075)
T KOG2171|consen 117 PELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTL--------QPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAE 188 (1075)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcccc--------chhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHH
Confidence 3455566666789999999999999998887665432 334666666665531 33499999999999887
Q ss_pred cCccccccccccCCchHHHHHHHh----cChHHHHHHHhcc-CC---CHHHHhh---CCchHHHHHHhhcCCccccchhc
Q 000744 565 ADESVGDILTSVDSDFDCLAALLK----NGLGEAAVLIYQL-RP---AFAQLSA---HEFIPSLVQLVLNKTEEFDELQF 633 (1306)
Q Consensus 565 ~~~~~~~~I~~~~~~i~~Lv~lLk----~g~~~Aa~aL~~L-~~---~~~~i~~---~g~i~~Lv~ll~~g~~~~~~~~~ 633 (1306)
..++|+...-....-+|.++..|. .|..++|...+.. .- +.+.+.. ...|..-+++.++.. .+
T Consensus 189 ~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~--l~---- 262 (1075)
T KOG2171|consen 189 YLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKE--LE---- 262 (1075)
T ss_pred HhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccc--cc----
Confidence 776666666665566666666654 4665544443332 11 2222222 122333334444332 11
Q ss_pred ccCchHHHHHHHHHHHccCCCCCchhhhhHhhc---C-C--CHHHHHhhc--CChh------------H----H---HHH
Q 000744 634 VMEPKDAAIEMLEQILMGGDKKSRSITALSLIS---A-N--GIPALIKCL--DRVE------------V----R---RSI 686 (1306)
Q Consensus 634 ~~~~k~aa~~lL~~l~~~~~~~~~~~n~~~i~~---~-g--~i~~Lv~~l--~~~~------------~----~---~~~ 686 (1306)
...=...|+-|++.. +++....+ . | -++.++.+. ...+ + . +.+
T Consensus 263 ----~~~R~~ALe~ivs~~------e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~ 332 (1075)
T KOG2171|consen 263 ----NSIRHLALEFLVSLS------EYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQA 332 (1075)
T ss_pred ----HHHHHHHHHHHHHHH------HhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHH
Confidence 011223334343332 22111111 1 1 123333333 1111 0 1 112
Q ss_pred HHHHHhhhhccchhHHHHHHhcccchhhh----hhhcCCchhHhHHHHHHHHHHhcchhhhHHHHHHHhhhcCCcchHHH
Q 000744 687 VSILLCCMHADKSCKTLIAKRIELSHVLD----LFHDGNDSVRGICINFLSELVLLNRRTFSNQILQVIRDEGSFSTMHT 762 (1306)
Q Consensus 687 ~~~L~~~~~~~~~~r~~i~~~~~~~~l~~----ll~~g~~~~k~~a~~~L~~L~~~~~~~~~~~~l~~i~~~g~~~~m~~ 762 (1306)
+--|.+++.. +.-.||+++ .+++...+.|..|+-+|.-+. ..+.+.+.++- =..|.+
T Consensus 333 lDrlA~~L~g----------~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~-----EGc~~~m~~~l----~~Il~~ 393 (1075)
T KOG2171|consen 333 LDRLALHLGG----------KQVLPPLFEALEAMLQSTEWKERHAALLALSVIA-----EGCSDVMIGNL----PKILPI 393 (1075)
T ss_pred HHHHHhcCCh----------hhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-----cccHHHHHHHH----HHHHHH
Confidence 2222222111 112344444 666777888888888886653 11222222111 123566
Q ss_pred HHHHhhcCCCcchhhHHHHHHhhhcccCCccccccHHHHHHHHHHHHhcCCCchHHHHHHHHHHhccc
Q 000744 763 FLVYLQMAPMEQQPATASLLLQLDLLVEPRKMSMYREEAVEALIEALRRKDFPNSQMMALDALLSLTG 830 (1306)
Q Consensus 763 ll~~l~~~~~~~~~~~A~~l~~l~~l~~~~~~~~~reeai~~l~~~l~~~~~~~~q~~aa~~l~~l~g 830 (1306)
.+.+|+..-|.=+..|-..++|+..-=.|.-.+.+++--+++|+..|.+....++|..||.||.|+.-
T Consensus 394 Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E 461 (1075)
T KOG2171|consen 394 VLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSE 461 (1075)
T ss_pred HHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHH
Confidence 78888887777777888899999876667666777777778999999999999999999999998743
No 484
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=92.27 E-value=3.3 Score=51.95 Aligned_cols=56 Identities=9% Similarity=0.185 Sum_probs=48.3
Q ss_pred cEEEEEeCCCcEEEEeCCC--ceEEcccCCCCEEEEEEeCC--EEEEEECCCcEEEEeCC
Q 000744 1009 KALMNLSSVNATELWHCNE--VTELDSSTNGEVLSLIHLKG--RVLSSHSDGTIKMWDSG 1064 (1306)
Q Consensus 1009 ~~Lasgs~Dg~I~IWd~~~--~~~i~~~H~~~V~sl~fspd--~LaSgs~Dg~I~vWd~~ 1064 (1306)
-+|+.|..-|.+.+|...+ ...+...|..+|.-+.||++ .++|+..=|.|.+|...
T Consensus 72 ~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 72 FVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred HHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 3578888899999999764 45566789999999999985 99999999999999875
No 485
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=92.11 E-value=0.14 Score=55.06 Aligned_cols=99 Identities=18% Similarity=0.195 Sum_probs=50.7
Q ss_pred EEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEec----cCCCeEEEEEe-
Q 000744 1093 LYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHIN----FNKHVKSLVMT- 1167 (1306)
Q Consensus 1093 L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~----~~~~V~sl~~s- 1167 (1306)
+..-+.||+|+-++++..+..+-....+.....-+.++..+++...+|. +.+|.|+..-.+.+ ....|-++-..
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~~~~~~vG~~dg~-v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~ 111 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTASAKLMVGTSDGA-VYVFNWNLEGAHSDRVCSGEESIDLGIPNG 111 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcceeecccCceEEeecccce-EEEecCCccchHHHhhhcccccceeccccc
Confidence 3344556777666666543322222211111111222455555666665 66666662211111 12223333222
Q ss_pred CC--EEEEEECCCcEEEEECCCCceeE
Q 000744 1168 GD--KLYCGCSGYSIQEVDLGNLTSTT 1192 (1306)
Q Consensus 1168 ~d--~L~sgs~Dg~I~iwDl~~~~~~~ 1192 (1306)
.+ ...+++.||.|+.|++.-++.+-
T Consensus 112 ~~~~~~c~~~~dg~ir~~n~~p~k~~g 138 (238)
T KOG2444|consen 112 RDSSLGCVGAQDGRIRACNIKPNKVLG 138 (238)
T ss_pred cccceeEEeccCCceeeeccccCceee
Confidence 22 67899999999999998776655
No 486
>PRK02888 nitrous-oxide reductase; Validated
Probab=91.87 E-value=4.7 Score=50.50 Aligned_cols=173 Identities=11% Similarity=0.064 Sum_probs=94.3
Q ss_pred EECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCC----CcEEEEEcCCCceeEEEeecCCCCeEEE
Q 000744 1052 SHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLD----KTIRVWSIKPEEIHCLQVHNVKEAVHEL 1127 (1306)
Q Consensus 1052 gs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~D----gtI~VWdi~~~~~~~i~~~~~~~~V~sl 1127 (1306)
.-..+.+.+.|.++. +...++.--. ....+.++++|.++++.+.+ +++..-+..... ....+... .+..+
T Consensus 211 ~ey~~~vSvID~etm--eV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d--~~vvfni~-~iea~ 284 (635)
T PRK02888 211 KKYRSLFTAVDAETM--EVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD--WVVVFNIA-RIEEA 284 (635)
T ss_pred cceeEEEEEEECccc--eEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCc--eEEEEchH-HHHHh
Confidence 344567777787776 5555554322 34567889999998887642 233333332221 11111100 00000
Q ss_pred EeCCcEEEEEcCCCeEEEEEecC----C---EEEeccCCCeEEEEEeCC--E-EEEEECCCcEEEEECCCCceeE-----
Q 000744 1128 TANAEIACFVSPATGVKVYNWSG----A---IKHINFNKHVKSLVMTGD--K-LYCGCSGYSIQEVDLGNLTSTT----- 1192 (1306)
Q Consensus 1128 ~~~~~~v~~s~dg~~I~i~~~~~----~---~~l~~~~~~V~sl~~s~d--~-L~sgs~Dg~I~iwDl~~~~~~~----- 1192 (1306)
.-++....+ .++.+.+.+... . ...+........+.++|| + ++++..+.++.++|+.+.+...
T Consensus 285 vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~ 362 (635)
T PRK02888 285 VKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK 362 (635)
T ss_pred hhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence 003333333 355577777654 1 333456778889999987 4 5666679999999998855311
Q ss_pred ---EecCcccccCCccEEEEEEeCCcEEEEEEecCCCEEEEEECCC
Q 000744 1193 ---FYAGTKKLLGKQTIHSLHMHNGLLFAGGSSVDGTAGKVFSISS 1235 (1306)
Q Consensus 1193 ---~~~~~~~l~gh~~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t 1235 (1306)
.......+ |. .-....|++++...++-..|. .|-.||+.+
T Consensus 363 ~~~~vvaevev-Gl-GPLHTaFDg~G~aytslf~ds-qv~kwn~~~ 405 (635)
T PRK02888 363 PRDAVVAEPEL-GL-GPLHTAFDGRGNAYTTLFLDS-QIVKWNIEA 405 (635)
T ss_pred ccceEEEeecc-CC-CcceEEECCCCCEEEeEeecc-eeEEEehHH
Confidence 00000000 11 123456776655555655687 899999876
No 487
>PHA02713 hypothetical protein; Provisional
Probab=91.83 E-value=3.2 Score=52.60 Aligned_cols=90 Identities=7% Similarity=0.004 Sum_probs=45.8
Q ss_pred cEEEEEeCC------CcEEEEeCCCceEEccc----CCCCEEEEEEeCCEEEEEECCC-----cEEEEeCCCCccceEEE
Q 000744 1009 KALMNLSSV------NATELWHCNEVTELDSS----TNGEVLSLIHLKGRVLSSHSDG-----TIKMWDSGKRVLRLIQE 1073 (1306)
Q Consensus 1009 ~~Lasgs~D------g~I~IWd~~~~~~i~~~----H~~~V~sl~fspd~LaSgs~Dg-----~I~vWd~~t~~~~~i~~ 1073 (1306)
.+.+.||.+ .++..||..+..-.... .......+.+.....+.||.+| ++..||..++.|..+..
T Consensus 305 ~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~ 384 (557)
T PHA02713 305 EIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPD 384 (557)
T ss_pred EEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCC
Confidence 567777753 34667787643211111 1112222333334556677654 48889998876554443
Q ss_pred EcccCccEEEEEEcCCCCEEEEEeCCC
Q 000744 1074 VREHTRAVTCLYVPSSGDKLYSGSLDK 1100 (1306)
Q Consensus 1074 l~~H~~~V~sl~fspdg~~L~Sgs~Dg 1100 (1306)
+.........+. -+|...+.||.++
T Consensus 385 mp~~r~~~~~~~--~~g~IYviGG~~~ 409 (557)
T PHA02713 385 MPIALSSYGMCV--LDQYIYIIGGRTE 409 (557)
T ss_pred CCcccccccEEE--ECCEEEEEeCCCc
Confidence 322221122222 2577777777654
No 488
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=91.81 E-value=3.3 Score=52.24 Aligned_cols=116 Identities=9% Similarity=0.003 Sum_probs=67.0
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccC
Q 000744 1079 RAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFN 1158 (1306)
Q Consensus 1079 ~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~ 1158 (1306)
...+-+.-+.-++.-++-+...++.|||.+.+..+.-..+...+.|.+++| ...++|+
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDW-----tst~d~q----------------- 87 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDW-----TSTPDGQ----------------- 87 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeecee-----eecCCCC-----------------
Confidence 344445444445444444445678999999886555555555688888884 2345554
Q ss_pred CCeEEEEEeCCEEEEEECCCcEEEEEC-----CCC----ceeEEecCcccccCCc--cEEEEEEeCCcEEEEEEecCCCE
Q 000744 1159 KHVKSLVMTGDKLYCGCSGYSIQEVDL-----GNL----TSTTFYAGTKKLLGKQ--TIHSLHMHNGLLFAGGSSVDGTA 1227 (1306)
Q Consensus 1159 ~~V~sl~~s~d~L~sgs~Dg~I~iwDl-----~~~----~~~~~~~~~~~l~gh~--~I~sl~~s~~~~llas~s~Dg~~ 1227 (1306)
.+++.|..+.|.+|-- .+. ..+..+ .+..++ +|....|.+++.+++++ + +.
T Consensus 88 -----------siLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i----~i~~~T~h~Igds~Wl~~G~LvV~s--G-Nq 149 (631)
T PF12234_consen 88 -----------SILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKI----DISSHTPHPIGDSIWLKDGTLVVGS--G-NQ 149 (631)
T ss_pred -----------EEEEEEcCcEEEEEEccchhhhcCCcccceeEEE----EeecCCCCCccceeEecCCeEEEEe--C-CE
Confidence 3334444444444422 111 112211 122333 78899999888888776 2 47
Q ss_pred EEEEECC
Q 000744 1228 GKVFSIS 1234 (1306)
Q Consensus 1228 I~IWD~~ 1234 (1306)
+.|+|-.
T Consensus 150 lfv~dk~ 156 (631)
T PF12234_consen 150 LFVFDKW 156 (631)
T ss_pred EEEECCC
Confidence 9999853
No 489
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=91.76 E-value=38 Score=41.15 Aligned_cols=217 Identities=10% Similarity=0.075 Sum_probs=109.2
Q ss_pred CcEEEEeCCCceEEcccCCCC-EEEEEEeCC--E-EEEEECC----------CcEEEEeCCCCccceEEEEcccCcc--E
Q 000744 1018 NATELWHCNEVTELDSSTNGE-VLSLIHLKG--R-VLSSHSD----------GTIKMWDSGKRVLRLIQEVREHTRA--V 1081 (1306)
Q Consensus 1018 g~I~IWd~~~~~~i~~~H~~~-V~sl~fspd--~-LaSgs~D----------g~I~vWd~~t~~~~~i~~l~~H~~~--V 1081 (1306)
.+++++|+.+...+...-... -..+.|.++ . +++...+ ..|+.|++.+...+-...+.+.... .
T Consensus 150 ~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~ 229 (414)
T PF02897_consen 150 YTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWF 229 (414)
T ss_dssp EEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSE
T ss_pred EEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEE
Confidence 459999998765544321111 223999986 4 4444332 2388889887743434455544433 5
Q ss_pred EEEEEcCCCCEEEEEeCCC----cEEEEEcCCC-----ceeEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCE
Q 000744 1082 TCLYVPSSGDKLYSGSLDK----TIRVWSIKPE-----EIHCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAI 1152 (1306)
Q Consensus 1082 ~sl~fspdg~~L~Sgs~Dg----tI~VWdi~~~-----~~~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~ 1152 (1306)
..+..++|+++++..+..+ .+.+.|...+ +.+++.... .+....+.
T Consensus 230 ~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~-~~~~~~v~------------------------ 284 (414)
T PF02897_consen 230 VSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE-DGVEYYVD------------------------ 284 (414)
T ss_dssp EEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS-SS-EEEEE------------------------
T ss_pred EEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC-CceEEEEE------------------------
Confidence 6888999999877544332 3556666653 122222211 11111111
Q ss_pred EEeccCCCeEEEEEeCCEEEEEE----CCCcEEEEECCCCce---eEEecCcccccCCc-cEEEEEEeCCcEEEEEEecC
Q 000744 1153 KHINFNKHVKSLVMTGDKLYCGC----SGYSIQEVDLGNLTS---TTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVD 1224 (1306)
Q Consensus 1153 ~l~~~~~~V~sl~~s~d~L~sgs----~Dg~I~iwDl~~~~~---~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~D 1224 (1306)
..++.++.-+ .++.|.-.++.+... ...+..+ ... .+..+....+.+++..- .+
T Consensus 285 -------------~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~----~~~~~l~~~~~~~~~Lvl~~~-~~ 346 (414)
T PF02897_consen 285 -------------HHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPE----DEDVSLEDVSLFKDYLVLSYR-EN 346 (414)
T ss_dssp -------------EETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE------SSSEEEEEEEEETTEEEEEEE-ET
T ss_pred -------------ccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCC----CCceeEEEEEEECCEEEEEEE-EC
Confidence 1122222211 234555666666542 1111111 111 46666666666665544 33
Q ss_pred C-CEEEEEECCCCceEEEEe--cCCCEEEEEEcCc----EEEEEECC--CcEEEEECCCCeE
Q 000744 1225 G-TAGKVFSISSKTAVGSFT--TGIDIQHLAVNSD----FIFTATKC--GTIEVWLKERVTR 1277 (1306)
Q Consensus 1225 g-~~I~IWD~~t~~~l~~l~--~~~~V~sla~spd----~Lasgs~D--g~I~IWd~~tg~~ 1277 (1306)
+ ..|++||...+.....+. ..+.|..+...++ ++...|.- ++++-||+.+++.
T Consensus 347 ~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 347 GSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp TEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred CccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 3 268899988455555554 3444666654443 33334432 6888899998864
No 490
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=91.72 E-value=4.1 Score=49.22 Aligned_cols=229 Identities=15% Similarity=0.087 Sum_probs=147.5
Q ss_pred HHHhhcCCC-CHHHHHHHHHHHHHHhhhcCCCcccccccccccchHHHHHHHhcCC-cHHHHHHHHHHHHHHhccCcccc
Q 000744 493 YVTCLCTSE-NLQECETAVLAIARLWKESKGDPGVHAYLLKPTIINGFAEILSASL-SREVLRTSVYILSELMVADESVG 570 (1306)
Q Consensus 493 ~l~~Ll~s~-~~~~~e~Av~~i~~L~~~~~~~~~~~~~i~~~~~I~~Lv~~L~~~~-~~~~~e~Av~~L~~L~s~~~~~~ 570 (1306)
.+...+.+. +...+.-|+..+..|.+.. ++|..+.+.++++.|+++|+... ..+.+=.++.+|--| +-++...
T Consensus 147 ~l~~~l~~~~~~~~~~~~v~~L~~LL~~~----~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlL-SF~~~~~ 221 (429)
T cd00256 147 WLKEQLNNITNNDYVQTAARCLQMLLRVD----EYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLL-TFNPHAA 221 (429)
T ss_pred HHHHHhhccCCcchHHHHHHHHHHHhCCc----hHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHH-hccHHHH
Confidence 444445433 4556666777777777655 45667778889999999999864 567777888888877 5554433
Q ss_pred ccccccCCchHHHHHHHhcCh-----HHHHHHHhccCC----------CHHHHhhCCchHHHHHHhhcCC-ccccchhcc
Q 000744 571 DILTSVDSDFDCLAALLKNGL-----GEAAVLIYQLRP----------AFAQLSAHEFIPSLVQLVLNKT-EEFDELQFV 634 (1306)
Q Consensus 571 ~~I~~~~~~i~~Lv~lLk~g~-----~~Aa~aL~~L~~----------~~~~i~~~g~i~~Lv~ll~~g~-~~~~~~~~~ 634 (1306)
... ...+.|+.|++++|.-. +=+.++|.||-. ....|+..|+ |++++.|+... .+.+...
T Consensus 222 ~~~-~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l-~~~l~~L~~rk~~DedL~e-- 297 (429)
T cd00256 222 EVL-KRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKV-LKTLQSLEQRKYDDEDLTD-- 297 (429)
T ss_pred Hhh-ccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcCh-HHHHHHHhcCCCCcHHHHH--
Confidence 333 34799999999999854 568888999954 2244555565 55777777776 2333211
Q ss_pred cCchHHHHHHHHHHH------ccCCCCC-------------------chhhhhHhhcCCC--HHHHHhhc-CChhHHHHH
Q 000744 635 MEPKDAAIEMLEQIL------MGGDKKS-------------------RSITALSLISANG--IPALIKCL-DRVEVRRSI 686 (1306)
Q Consensus 635 ~~~k~aa~~lL~~l~------~~~~~~~-------------------~~~n~~~i~~~g~--i~~Lv~~l-~~~~~~~~~ 686 (1306)
+-..+-+.|- +.||... =.||..++-+.+. +..|+++| .+.+...-|
T Consensus 298 -----dl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~la 372 (429)
T cd00256 298 -----DLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILA 372 (429)
T ss_pred -----HHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceee
Confidence 1112212111 3232111 2377778766652 35677777 333333222
Q ss_pred HH--HHHhhhhccchhHHHHHHhcccchhhhhhhcCCchhHhHHHHHHHHH
Q 000744 687 VS--ILLCCMHADKSCKTLIAKRIELSHVLDLFHDGNDSVRGICINFLSEL 735 (1306)
Q Consensus 687 ~~--~L~~~~~~~~~~r~~i~~~~~~~~l~~ll~~g~~~~k~~a~~~L~~L 735 (1306)
++ =+-..++....+|..+.+-|+..-+++|+...++..|.+|+..+-.|
T Consensus 373 VAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQkl 423 (429)
T cd00256 373 VACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKL 423 (429)
T ss_pred hhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 22 12234555677888899999999999999999999999998887555
No 491
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.63 E-value=0.18 Score=58.25 Aligned_cols=64 Identities=14% Similarity=0.242 Sum_probs=49.4
Q ss_pred HHHHHHHHHhhC-chhhHHHHHHHhhcCc--cchhhhchH--HHHHhhccCCccchhhhhhhhhhhhhh
Q 000744 127 LNLSYLWKLRNN-VQNSVLHALEMFSIDP--FFSRIDFAP--ELWKELFLPQMSSIVGWYSEARHRLVM 190 (1306)
Q Consensus 127 ~~ls~~~~l~~~-~~~~a~h~l~~f~~~p--~~~r~~~~p--~l~~~lf~~~~~~~~~~~~~~~~~~~~ 190 (1306)
+..++||-+=+. .-.+|..+-+.==+++ .-.|++|+- ..|+.|=..-+-+-..|-...|++|..
T Consensus 119 ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~ 187 (394)
T KOG2817|consen 119 LNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKE 187 (394)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhcc
Confidence 677777765444 4467777776655554 588999986 889999999999999999999988773
No 492
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=91.61 E-value=8.7 Score=45.25 Aligned_cols=302 Identities=13% Similarity=0.139 Sum_probs=175.1
Q ss_pred HhChhhHHHhhcCCCCHHHHHHHHHHHHHHhhhcCCCcccccccccccchHHHHHHHhcC--Cc----HHHHHHHHHHHH
Q 000744 487 INGLKPYVTCLCTSENLQECETAVLAIARLWKESKGDPGVHAYLLKPTIINGFAEILSAS--LS----REVLRTSVYILS 560 (1306)
Q Consensus 487 ~~~~~~~l~~Ll~s~~~~~~e~Av~~i~~L~~~~~~~~~~~~~i~~~~~I~~Lv~~L~~~--~~----~~~~e~Av~~L~ 560 (1306)
.+++..+++.+.+|++.+.-++--+++.|+.-++++ .|.++-+.|+-.-++++|..- .+ ++-..-+-..|.
T Consensus 85 ~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E---~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~ 161 (604)
T KOG4500|consen 85 DAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNE---NRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLH 161 (604)
T ss_pred HHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCch---hHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHH
Confidence 367788888999999888888889999999988874 457888888866667777662 12 355566777888
Q ss_pred HHhccCccccccccccCCchHHHHHHHhcChHHHHHHHhccCC--C---------HHHHhhCCchHHHHHHhhcCCcccc
Q 000744 561 ELMVADESVGDILTSVDSDFDCLAALLKNGLGEAAVLIYQLRP--A---------FAQLSAHEFIPSLVQLVLNKTEEFD 629 (1306)
Q Consensus 561 ~L~s~~~~~~~~I~~~~~~i~~Lv~lLk~g~~~Aa~aL~~L~~--~---------~~~i~~~g~i~~Lv~ll~~g~~~~~ 629 (1306)
|-+--+++.+.+.++ .|.++-|+.++--|-.+|+..=-.|.+ | .+.-.....+--|+++|.....
T Consensus 162 Ny~l~~~~l~aq~~~-~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~--- 237 (604)
T KOG4500|consen 162 NYILDSRELRAQVAD-AGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVR--- 237 (604)
T ss_pred HhhCCcHHHHHHHHh-cccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhc---
Confidence 887777888999997 899999999998776555544333322 2 3334445667778888777542
Q ss_pred chhcccCchHHHHHHHHHHHccCCCCCchhhhhHhhcCCCHHHHHhhc---CChhHHHHHHHHH-------Hhhhhccch
Q 000744 630 ELQFVMEPKDAAIEMLEQILMGGDKKSRSITALSLISANGIPALIKCL---DRVEVRRSIVSIL-------LCCMHADKS 699 (1306)
Q Consensus 630 ~~~~~~~~k~aa~~lL~~l~~~~~~~~~~~n~~~i~~~g~i~~Lv~~l---~~~~~~~~~~~~L-------~~~~~~~~~ 699 (1306)
.|.+-++++.|...+ -|.+.+-..++.|-+..+++++ ...-.+..+...+ ....-.|.+
T Consensus 238 --------~d~~eM~feila~~a---end~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeS 306 (604)
T KOG4500|consen 238 --------EDIDEMIFEILAKAA---ENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDES 306 (604)
T ss_pred --------cchhhHHHHHHHHHh---cCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchH
Confidence 234556777776543 3456667788888777777776 1111122121111 111122222
Q ss_pred hHHHHHHhcccchhhhh----hhcCCchhHhHHHHHHHHHHhcchhhhHHHHHHHhhhcCCcchHHHHHHHhhc-----C
Q 000744 700 CKTLIAKRIELSHVLDL----FHDGNDSVRGICINFLSELVLLNRRTFSNQILQVIRDEGSFSTMHTFLVYLQM-----A 770 (1306)
Q Consensus 700 ~r~~i~~~~~~~~l~~l----l~~g~~~~k~~a~~~L~~L~~~~~~~~~~~~l~~i~~~g~~~~m~~ll~~l~~-----~ 770 (1306)
-...- .-|.+++- +++....---.++-++-++.+.. ..+. ...+.| +|.-|+.+|-+ +
T Consensus 307 Mq~L~----~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D--~~ci----~~v~~~---~~nkL~~~l~~~~~vdg 373 (604)
T KOG4500|consen 307 MQKLH----ADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRD--DICI----QLVQKD---FLNKLISCLMQEKDVDG 373 (604)
T ss_pred HHHHh----cCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccc--hHHH----HHHHHH---HHHHHHHHHHHhcCCCc
Confidence 11111 11224433 33333333334444444444322 1222 222222 23335555544 1
Q ss_pred CCcchhhHHHHHHhhhcccCCccccccHHHHHHHHHHHHhcCCCchHHHH
Q 000744 771 PMEQQPATASLLLQLDLLVEPRKMSMYREEAVEALIEALRRKDFPNSQMM 820 (1306)
Q Consensus 771 ~~~~~~~~A~~l~~l~~l~~~~~~~~~reeai~~l~~~l~~~~~~~~q~~ 820 (1306)
.-+-|..+-..|-+|.. -.|.|..+...|-+++++.-|+....+-+++.
T Consensus 374 nV~~qhA~lsALRnl~I-Pv~nka~~~~aGvteaIL~~lk~~~ppv~fkl 422 (604)
T KOG4500|consen 374 NVERQHACLSALRNLMI-PVSNKAHFAPAGVTEAILLQLKLASPPVTFKL 422 (604)
T ss_pred cchhHHHHHHHHHhccc-cCCchhhccccchHHHHHHHHHhcCCcchHHH
Confidence 11222222223333333 34567888888999999888887765555544
No 493
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=91.61 E-value=22 Score=38.93 Aligned_cols=46 Identities=9% Similarity=0.146 Sum_probs=35.6
Q ss_pred EEEe-CCcEEEEEEecCCCEEEEEECCCCceEEEEe-cCCCEEEEEEcCc
Q 000744 1209 LHMH-NGLLFAGGSSVDGTAGKVFSISSKTAVGSFT-TGIDIQHLAVNSD 1256 (1306)
Q Consensus 1209 l~~s-~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~-~~~~V~sla~spd 1256 (1306)
+++. .+.+++++. ++++|...|..+|+.+.++. ....|+|++|-..
T Consensus 217 m~ID~eG~L~Va~~--ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 217 MTIDTEGNLYVATF--NGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred ceEccCCcEEEEEe--cCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 4444 556677665 56689999999999999998 4667999999653
No 494
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=91.53 E-value=46 Score=41.70 Aligned_cols=248 Identities=10% Similarity=0.094 Sum_probs=122.6
Q ss_pred CEEEEEECCCcEEEEeCCCCccceEEEEccc-CccEEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCceeEEEeecCCCCe
Q 000744 1047 GRVLSSHSDGTIKMWDSGKRVLRLIQEVREH-TRAVTCLYVPSSG-DKLYSGSLDKTIRVWSIKPEEIHCLQVHNVKEAV 1124 (1306)
Q Consensus 1047 d~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H-~~~V~sl~fspdg-~~L~Sgs~DgtI~VWdi~~~~~~~i~~~~~~~~V 1124 (1306)
+.++-+..+|.+....+...........-+. ....+++.+..+| .+++.||.-|.=.++.+.....+.+..+..-++|
T Consensus 223 ~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N~~Pi 302 (504)
T PF10433_consen 223 DRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPNWGPI 302 (504)
T ss_dssp SEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE----SE
T ss_pred CEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccCcCCc
Confidence 4888999999999988865411111222233 4455666665544 4788888766655666656557788878777899
Q ss_pred EEEEe-------CC------cEEEEEcCCC--eEEEEEecCCEE--E---eccC--CCeEEEEEe---CCEEEEEECCCc
Q 000744 1125 HELTA-------NA------EIACFVSPAT--GVKVYNWSGAIK--H---INFN--KHVKSLVMT---GDKLYCGCSGYS 1179 (1306)
Q Consensus 1125 ~sl~~-------~~------~~v~~s~dg~--~I~i~~~~~~~~--l---~~~~--~~V~sl~~s---~d~L~sgs~Dg~ 1179 (1306)
.++++ .. .+++++..|+ .+++....-... . .... ..++.+... ..+++.+..+.+
T Consensus 303 ~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~~~T 382 (504)
T PF10433_consen 303 VDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSFPNET 382 (504)
T ss_dssp EEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEESSEE
T ss_pred cceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEcCCce
Confidence 99886 11 3444443332 133222210111 0 0111 122222222 235555555443
Q ss_pred EEEEECC---CCceeEEecCcccccCCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEe--cCCCEEEEEE
Q 000744 1180 IQEVDLG---NLTSTTFYAGTKKLLGKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFT--TGIDIQHLAV 1253 (1306)
Q Consensus 1180 I~iwDl~---~~~~~~~~~~~~~l~gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~--~~~~V~sla~ 1253 (1306)
+++.+. ....+...... .+.... .+.+-.+. ++.++=.. .. .|++.+..+++....+. .+..|.+.++
T Consensus 383 -~vl~~~~~d~~e~~~e~~~~-~f~~~~~Tl~~~~~~-~~~ivQVt--~~-~i~l~~~~~~~~~~~w~~~~~~~I~~a~~ 456 (504)
T PF10433_consen 383 -RVLQISEGDDGEEVEEVEED-GFDTDEPTLAAGNVG-DGRIVQVT--PK-GIRLIDLEDGKLTQEWKPPAGSIIVAASI 456 (504)
T ss_dssp -EEEEES----SSEEEEE----TS-SSS-EEEEEEET-TTEEEEEE--SS-EEEEEESSSTSEEEEEE-TTS---SEEEE
T ss_pred -EEEEEecccCCcchhhhhhc-cCCCCCCCeEEEEcC-CCeEEEEe--cC-eEEEEECCCCeEEEEEeCCCCCeEEEEEE
Confidence 344442 23332211111 111112 33333333 44444443 33 59999988888877664 4556888888
Q ss_pred cCcEEEEEECCCcEEEEECCCCeEEEEEecccCCCCCCCeEEEEEcC
Q 000744 1254 NSDFIFTATKCGTIEVWLKERVTRVASVKANNSGGGHAKITCLGTGV 1300 (1306)
Q Consensus 1254 spd~Lasgs~Dg~I~IWd~~tg~~l~~l~~~~~~~~~~~V~slafSp 1300 (1306)
+..+++.+-.++.+..+.+....................|.|+..+|
T Consensus 457 ~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 457 NDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp SSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred CCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 88877777778999999988776543333100001246899998877
No 495
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=91.43 E-value=0.12 Score=57.46 Aligned_cols=51 Identities=16% Similarity=0.301 Sum_probs=39.4
Q ss_pred CcccCcccccccCCc----EEcCCCCcccHHHHHHHHHcCCCCCCCCCCccCCCCC
Q 000744 342 KDFVCPITGQIFNDP----VTLETGQTYERKAIQEWLKRGNTTCPITRQPLCSNSL 393 (1306)
Q Consensus 342 ~~~~CpIc~~l~~dP----v~~~cGhtfc~~cI~~~~~~~~~~CP~c~~~l~~~~l 393 (1306)
+|+ ||+|.+-|.-. .-.+||+..|+.|....-+.-+..||.||......++
T Consensus 14 ed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv 68 (480)
T COG5175 14 EDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENV 68 (480)
T ss_pred ccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccce
Confidence 555 99999987532 1347999999999877776667789999998876654
No 496
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=91.29 E-value=20 Score=41.67 Aligned_cols=209 Identities=9% Similarity=-0.050 Sum_probs=101.9
Q ss_pred EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCce-eEEEeecC---CCC
Q 000744 1048 RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLDKTIRVWSIKPEEI-HCLQVHNV---KEA 1123 (1306)
Q Consensus 1048 ~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~DgtI~VWdi~~~~~-~~i~~~~~---~~~ 1123 (1306)
.+.+--..+.|.-||..++. ...+. +.+.+.++..-..+..|+++.. -+.+++..++.. ..+..... ...
T Consensus 39 L~w~DI~~~~i~r~~~~~g~---~~~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r 112 (307)
T COG3386 39 LLWVDILGGRIHRLDPETGK---KRVFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNR 112 (307)
T ss_pred EEEEeCCCCeEEEecCCcCc---eEEEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCCCCcCC
Confidence 45566667888889988762 33342 3344455554444545555443 356777765533 22211110 112
Q ss_pred eEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEEEEeCCEEEEEECCCcEEEEECCCCceeEEecCcccccCC
Q 000744 1124 VHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSLVMTGDKLYCGCSGYSIQEVDLGNLTSTTFYAGTKKLLGK 1203 (1306)
Q Consensus 1124 V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl~~s~d~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~l~gh 1203 (1306)
.+.. .+.++|. +.+.+... +..+ .-..-.-|.++.+|. .+.......+ +
T Consensus 113 ~ND~-------~v~pdG~-~wfgt~~~---------------~~~~-~~~~~~~G~lyr~~p-~g~~~~l~~~------~ 161 (307)
T COG3386 113 PNDG-------VVDPDGR-IWFGDMGY---------------FDLG-KSEERPTGSLYRVDP-DGGVVRLLDD------D 161 (307)
T ss_pred CCce-------eEcCCCC-EEEeCCCc---------------cccC-ccccCCcceEEEEcC-CCCEEEeecC------c
Confidence 2222 3666665 22222111 0000 000001134444444 3444443221 1
Q ss_pred c-cEEEEEEeCCcEEEEEEecCCCEEEEEECCC--Cce----EEEEe--cCCCEEEEEEcCc-EEE-EEECCC-cEEEEE
Q 000744 1204 Q-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISS--KTA----VGSFT--TGIDIQHLAVNSD-FIF-TATKCG-TIEVWL 1271 (1306)
Q Consensus 1204 ~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t--~~~----l~~l~--~~~~V~sla~spd-~La-sgs~Dg-~I~IWd 1271 (1306)
- .-+.|+|+|++..+.......+.|.-|++.. +.. ...+. ..+..-.++...+ .+. ++-.+| .|.+|+
T Consensus 162 ~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~ 241 (307)
T COG3386 162 LTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFN 241 (307)
T ss_pred EEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEEC
Confidence 1 4478999987744433333334677777652 111 11111 1233445566555 333 444443 899999
Q ss_pred CCCCeEEEEEecccCCCCCCCeEEEEEc
Q 000744 1272 KERVTRVASVKANNSGGGHAKITCLGTG 1299 (1306)
Q Consensus 1272 ~~tg~~l~~l~~~~~~~~~~~V~slafS 1299 (1306)
.. |+.+..+.. ....+++++|-
T Consensus 242 pd-G~l~~~i~l-----P~~~~t~~~Fg 263 (307)
T COG3386 242 PD-GKLLGEIKL-----PVKRPTNPAFG 263 (307)
T ss_pred CC-CcEEEEEEC-----CCCCCccceEe
Confidence 98 899988875 22466777774
No 497
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=91.25 E-value=0.14 Score=41.48 Aligned_cols=43 Identities=23% Similarity=0.462 Sum_probs=22.4
Q ss_pred CcccccccCCc--EE--cCCCCcccHHHHHHHHHcCCCCCCCCCCcc
Q 000744 346 CPITGQIFNDP--VT--LETGQTYERKAIQEWLKRGNTTCPITRQPL 388 (1306)
Q Consensus 346 CpIc~~l~~dP--v~--~~cGhtfc~~cI~~~~~~~~~~CP~c~~~l 388 (1306)
||+|.+.|..- -. -+||+..|+.|..+.++.+...||.||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 77887777321 12 269999999999988877788899999864
No 498
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=91.22 E-value=0.052 Score=68.88 Aligned_cols=49 Identities=18% Similarity=0.429 Sum_probs=40.8
Q ss_pred ccCcccccccCCcEEcCCCCcccHHHHHHHHHcC-CCCCCCCCCccCCCCC
Q 000744 344 FVCPITGQIFNDPVTLETGQTYERKAIQEWLKRG-NTTCPITRQPLCSNSL 393 (1306)
Q Consensus 344 ~~CpIc~~l~~dPv~~~cGhtfc~~cI~~~~~~~-~~~CP~c~~~l~~~~l 393 (1306)
+.|+||.+ ..+|+++.|||-||+.|+...++.. ...||.|+..+....+
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l 504 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKL 504 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHH
Confidence 89999999 8889999999999999999999843 3469999876654443
No 499
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.20 E-value=15 Score=41.36 Aligned_cols=211 Identities=12% Similarity=0.064 Sum_probs=0.0
Q ss_pred EEEeCC----EEEEEECCCcEEEEeCCCCccceEEEEcccCccEEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCce
Q 000744 1042 LIHLKG----RVLSSHSDGTIKMWDSGKRVLRLIQEVREHTRAVTCLYVPSSGDKLYSGSLD-----KTIRVWSIKPEEI 1112 (1306)
Q Consensus 1042 l~fspd----~LaSgs~Dg~I~vWd~~t~~~~~i~~l~~H~~~V~sl~fspdg~~L~Sgs~D-----gtI~VWdi~~~~~ 1112 (1306)
|+|+|. ..+.=--.-...++|.++.....+..-.....---.=.|||||.+|+..-.| |.|-|||.+.+
T Consensus 73 i~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~-- 150 (366)
T COG3490 73 IAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG-- 150 (366)
T ss_pred eecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc--
Q ss_pred eEEEeecCCCCeEEEEeCCcEEEEEcCCCeEEEEEecCCEEEeccCCCeEEE-EEeCCEEEEEECCCcEEEEECCCCcee
Q 000744 1113 HCLQVHNVKEAVHELTANAEIACFVSPATGVKVYNWSGAIKHINFNKHVKSL-VMTGDKLYCGCSGYSIQEVDLGNLTST 1191 (1306)
Q Consensus 1113 ~~i~~~~~~~~V~sl~~~~~~v~~s~dg~~I~i~~~~~~~~l~~~~~~V~sl-~~s~d~L~sgs~Dg~I~iwDl~~~~~~ 1191 (1306)
+.+.+.....-..++-+.+.+||+.+.+ .++.|..= .|....+=.-+..-++.+.|..+|..+
T Consensus 151 -----fqrvgE~~t~GiGpHev~lm~DGrtlvv-----------anGGIethpdfgR~~lNldsMePSlvlld~atG~li 214 (366)
T COG3490 151 -----FQRVGEFSTHGIGPHEVTLMADGRTLVV-----------ANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLI 214 (366)
T ss_pred -----cceecccccCCcCcceeEEecCCcEEEE-----------eCCceecccccCccccchhhcCccEEEEeccccchh
Q ss_pred EEecCccccc--CCc-cEEEEEEeCCcEEEEEEecCCCEEEEEECCCCceEEEEecCCC------------------EEE
Q 000744 1192 TFYAGTKKLL--GKQ-TIHSLHMHNGLLFAGGSSVDGTAGKVFSISSKTAVGSFTTGID------------------IQH 1250 (1306)
Q Consensus 1192 ~~~~~~~~l~--gh~-~I~sl~~s~~~~llas~s~Dg~~I~IWD~~t~~~l~~l~~~~~------------------V~s 1250 (1306)
.... +. .+. .|+.++..+++.+.+++-..| +-++...+--....+. |-+
T Consensus 215 ekh~----Lp~~l~~lSiRHld~g~dgtvwfgcQy~G------~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigs 284 (366)
T COG3490 215 EKHT----LPASLRQLSIRHLDIGRDGTVWFGCQYRG------PRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGS 284 (366)
T ss_pred hhcc----CchhhhhcceeeeeeCCCCcEEEEEEeeC------CCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhh
Q ss_pred EEEcCc---EEEEEECCCcEEEEECCCCeEEEE
Q 000744 1251 LAVNSD---FIFTATKCGTIEVWLKERVTRVAS 1280 (1306)
Q Consensus 1251 la~spd---~Lasgs~Dg~I~IWd~~tg~~l~~ 1280 (1306)
|+.+-+ ..+|.=.-+..-+||..+|..+..
T Consensus 285 iA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~ 317 (366)
T COG3490 285 IAANRRDGLVALTSPRGNRAVIWDAATGAVVSE 317 (366)
T ss_pred eeecccCCeEEEecCCCCeEEEEEcCCCcEEec
No 500
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=91.12 E-value=0.054 Score=66.24 Aligned_cols=48 Identities=21% Similarity=0.442 Sum_probs=39.9
Q ss_pred CcccCcccccccCCcEEc---CCCCcccHHHHHHHHHcCCCCCCCCCCccCC
Q 000744 342 KDFVCPITGQIFNDPVTL---ETGQTYERKAIQEWLKRGNTTCPITRQPLCS 390 (1306)
Q Consensus 342 ~~~~CpIc~~l~~dPv~~---~cGhtfc~~cI~~~~~~~~~~CP~c~~~l~~ 390 (1306)
..-.||+|..-+.|-.+. .|+|-||..||..|-.. ..+||.||..+..
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~-aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC-AQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh-cccCchhhhhhhe
Confidence 456899999988887643 59999999999999886 6789999987653
Done!