BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000745
(1306 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MM2|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b
pdb|2L75|A Chain A, Solution Structure Of Chd4-Phd2 In Complex With H3k9me3
Length = 61
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 327 ANDWNSDECCLCKMDGSLLCCDGCPAAYHSKCVG--VANVPEGDWFCPEC 374
+D + + C +CK G LLCCD CP++YH C+ + +P G+W CP C
Sbjct: 4 GSDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRC 53
>pdb|1XWH|A Chain A, Nmr Structure Of The First Phd Finger Of Autoimmune
Regulator Protein (Aire1): Insights Into Apeced
pdb|2KE1|A Chain A, Molecular Basis Of Non-Modified Histone H3 Tail
Recognition By The First Phd Finger Of Autoimmune
Regulator
Length = 66
Score = 55.5 bits (132), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 331 NSDECCLCKMDGSLLCCDGCPAAYHSKCVG--VANVPEGDWFCPEC 374
N DEC +C+ G L+CCDGCP A+H C+ + +P G W C C
Sbjct: 7 NEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSC 52
>pdb|1MM3|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b With C-
Terminal Loop Replaced By Corresponding Loop From Wstf
Length = 61
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 327 ANDWNSDECCLCKMDGSLLCCDGCPAAYHSKCVGVA--NVPEGDWFCPEC 374
+D + + C +CK G LLCCD CP++YH C+ A VP+G+W CP C
Sbjct: 4 GSDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLRPALYEVPDGEWQCPRC 53
>pdb|2L5U|A Chain A, Structure Of The First Phd Finger (Phd1) From Chd4 (Mi2b)
Length = 61
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 331 NSDECCLCKMDGSLLCCDGCPAAYHSKCV--GVANVPEGDWFCPEC 374
+ D C +C+ G ++ CD CP AYH C+ + PEG W CP C
Sbjct: 10 HQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHC 55
>pdb|2KU3|A Chain A, Solution Structure Of Brd1 Phd1 Finger
Length = 71
Score = 47.8 bits (112), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 331 NSDECCLCKMDGS------LLCCDGCPAAYHSKCVGVANVPEGDWFCPECALDRHKP 381
+ D C MDG +L CD C A H +C GV +PEG W C C R +P
Sbjct: 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARP 70
>pdb|2KFT|A Chain A, Nmr Solution Structure Of The First Phd Finger Domain Of
Human Autoimmune Regulator (Aire) In Complex With
Histone H3(1-20cys) Peptide
Length = 56
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 331 NSDECCLCKMDGSLLCCDGCPAAYHSKCVG--VANVPEGDWFCPEC 374
N DEC +C+ G L+CCDGCP A+H C+ + +P G W C C
Sbjct: 4 NEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSC 49
>pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|B Chain B, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|C Chain C, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|D Chain D, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|E Chain E, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|F Chain F, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|G Chain G, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|H Chain H, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|I Chain I, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|J Chain J, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|K Chain K, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|L Chain L, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5N|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5N|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5O|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5P|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
Length = 207
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 328 NDWNSDECCLCKMDGSLLCCDGCPAAYHSKC--VGVANVPEGDWFCPEC 374
+D N D C +C+ G LLCC+ CP +H C + + P GDW C C
Sbjct: 3 DDPNEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFC 51
>pdb|2L43|A Chain A, Structural Basis For Histone Code Recognition By
Brpf2-Phd1 Finger
Length = 88
Score = 47.4 bits (111), Expect = 6e-05, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 331 NSDECCLCKMDGS------LLCCDGCPAAYHSKCVGVANVPEGDWFCPECALDRHKPWMK 384
+ D C MDG +L CD C A H +C GV +PEG W C C R +P ++
Sbjct: 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARPALE 82
>pdb|2PUY|A Chain A, Crystal Structure Of The Bhc80 Phd Finger
pdb|2PUY|B Chain B, Crystal Structure Of The Bhc80 Phd Finger
Length = 60
Score = 46.6 bits (109), Expect = 9e-05, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 331 NSDECCLCKMDGSLLCCDGCPAAYHSKCVG--VANVPEGDWFCPEC 374
+ D C +C+ G LL CD C YH C+ + +P+G W CP C
Sbjct: 4 HEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRC 49
>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|B Chain B, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|C Chain C, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|D Chain D, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O34|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(13-32)k23ac Peptide
pdb|3O35|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O35|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O36|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O36|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O37|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|C Chain C, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|D Chain D, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
Length = 184
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 331 NSDECCLCKMDGSLLCCDGCPAAYHSKC--VGVANVPEGDWFCPECALDRHKP 381
N D C +C+ G LLCC+ CP +H C + N P G+W C C D KP
Sbjct: 3 NEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCR-DLSKP 54
>pdb|1WEU|A Chain A, Solution Structure Of Phd Domain In Ing1-Like Protein
Bac25009
Length = 91
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 313 ISAGSCLTEEVVDDANDWNSDECCLCKM--DGSLLCCDGCPAA---YHSKCVGVANVPEG 367
++ GS +V+D D N CLC G ++ CD + +H CVG+ P G
Sbjct: 16 VTFGSVHPSDVLDMPVDPNEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRG 75
Query: 368 DWFCPECA 375
WFCP C+
Sbjct: 76 KWFCPRCS 83
>pdb|2K1J|A Chain A, Plan Homeodomain Finger Of Tumour Supressor Ing4
Length = 63
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 329 DWNSDECCLCKM--DGSLLCCDGCPAA---YHSKCVGVANVPEGDWFCPECALDRHK 380
D N CLC G ++ CD + +H CVG+ P G WFCP C+ +R K
Sbjct: 6 DPNEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQERKK 62
>pdb|2M1R|A Chain A, Phd Domain Of Ing4 N214d Mutant
Length = 63
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 329 DWNSDECCLCKM--DGSLLCCDGCPAA---YHSKCVGVANVPEGDWFCPECALDRHK 380
D N CLC G ++ CD + +H CVG+ P G WFCP C+ +R K
Sbjct: 6 DPNEPTYCLCHQVSYGEMIGCDDPDCSIEWFHFACVGLTTKPRGKWFCPRCSQERKK 62
>pdb|2VNF|A Chain A, Molecular Basis Of Histone H3k4me3 Recognition By Ing4
pdb|2VNF|C Chain C, Molecular Basis Of Histone H3k4me3 Recognition By Ing4
Length = 60
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 329 DWNSDECCLCKM--DGSLLCCDGCPAA---YHSKCVGVANVPEGDWFCPECALDR 378
D N CLC G ++ CD + +H CVG+ P G WFCP C+ +R
Sbjct: 6 DPNEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQER 60
>pdb|2QIC|A Chain A, Crystal Structure Of The Ing1 Phd Finger In Complex With A
Histone H3k4me3 Peptide
Length = 62
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 329 DWNSDECCLCKM--DGSLLCCDG--CPAA-YHSKCVGVANVPEGDWFCPEC 374
D N CLC G ++ CD CP +H CVG+ + P+G W+CP+C
Sbjct: 7 DPNEPTYCLCNQVSYGEMIGCDNDECPIEWFHFSCVGLNHKPKGKWYCPKC 57
>pdb|2K16|A Chain A, Solution Structure Of The Free Taf3 Phd Domain
pdb|2K17|A Chain A, Solution Structure Of The Taf3 Phd Domain In Complex With
A H3k4me3 Peptide
Length = 75
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 341 DGS-LLCCDGCPAAYHSKCVGVANVP--EGDWFCPECA 375
DGS ++ CD C YH CVG+ P E WFCP+CA
Sbjct: 29 DGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCA 66
>pdb|2PNX|A Chain A, The Phd Finger Of Ing4 In Complex With An H3k4me3 Histone
Peptide
pdb|2PNX|C Chain C, The Phd Finger Of Ing4 In Complex With An H3k4me3 Histone
Peptide
Length = 55
Score = 40.8 bits (94), Expect = 0.005, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 331 NSDECCLCKM--DGSLLCCDGCPAA---YHSKCVGVANVPEGDWFCPECALDR 378
N CLC G ++ CD + +H CVG+ P G WFCP C+ +R
Sbjct: 3 NEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQER 55
>pdb|3C6W|A Chain A, Crystal Structure Of The Ing5 Phd Finger In Complex With
H3k4me3 Peptide
pdb|3C6W|C Chain C, Crystal Structure Of The Ing5 Phd Finger In Complex With
H3k4me3 Peptide
Length = 59
Score = 39.7 bits (91), Expect = 0.011, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 331 NSDECCLCKM--DGSLLCCDG--CPAA-YHSKCVGVANVPEGDWFCPECALDR 378
N CLC G ++ CD CP +H CV + P+G WFCP C ++
Sbjct: 7 NEPTYCLCHQVSYGEMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRCVQEK 59
>pdb|2G6Q|A Chain A, Crystal Structure Of Ing2 Phd Domain In Complex With
H3k4me3 Peptide
Length = 62
Score = 39.7 bits (91), Expect = 0.012, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 327 ANDWNSDECCLCKM--DGSLLCCDG--CPAA-YHSKCVGVANVPEGDWFCPECALD 377
A D N CLC G ++ CD CP +H CV + P+G W+CP+C D
Sbjct: 5 AIDPNEPTYCLCNQVSYGEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRGD 60
>pdb|2E6R|A Chain A, Solution Structure Of The Phd Domain In Smcy Protein
Length = 92
Score = 38.9 bits (89), Expect = 0.020, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 335 CCLCKMDGSLLCCDGCPAAYHSKCV--GVANVPEGDWFCPECAL 376
C D LL CDGC YH C+ + +P G W CP+C L
Sbjct: 22 CSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65
>pdb|2YQL|A Chain A, Solution Structure Of The Phd Domain In Phd Finger Protein
21a
Length = 56
Score = 38.9 bits (89), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 331 NSDECCLCKMDGSLLCCDGCPAAYHSKCVG--VANVPEGDWFCPEC 374
+ D C +C+ G LL CD C YH C+ + +P+G W CP C
Sbjct: 8 HEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRC 53
>pdb|1F62|A Chain A, Wstf-Phd
Length = 51
Score = 37.4 bits (85), Expect = 0.052, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 335 CCLCKMDGS---LLCCDGCPAAYHSKCVGVA--NVPEGDWFCPEC 374
C +C+ G L+ CD C A+H C+ A VP+G+W CP C
Sbjct: 3 CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPAC 47
>pdb|1X4I|A Chain A, Solution Structure Of Phd Domain In Inhibitor Of Growth
Protein 3 (Ing3)
Length = 70
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 11/56 (19%)
Query: 336 CLCKM--DGSLLCCDG--CPAA-YHSKCVGVANVPEGDWFCPECAL------DRHK 380
C+C G ++ CD CP +H CVG+ P+G W+CP+C RHK
Sbjct: 9 CICNQVSYGEMVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTAAMKRRGSRHK 64
>pdb|3ZVZ|B Chain B, Phd Finger Of Human Uhrf1
Length = 57
Score = 35.0 bits (79), Expect = 0.30, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 345 LCCDGCPAAYHSKCVG--VANVP-EGDWFCPECALD 377
L CD C A+H C+ +++VP E +W+CPEC D
Sbjct: 21 LMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 56
>pdb|3ASK|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|B Chain B, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|C Chain C, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|D Chain D, Structure Of Uhrf1 In Complex With Histone Tail
Length = 226
Score = 33.9 bits (76), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 345 LCCDGCPAAYHSKCVG--VANVP-EGDWFCPECALD 377
L CD C A+H C+ +++VP E +W+CPEC D
Sbjct: 190 LMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225
>pdb|4GY5|A Chain A, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|B Chain B, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|C Chain C, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|D Chain D, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
Length = 241
Score = 33.5 bits (75), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 345 LCCDGCPAAYHSKCVG--VANVP-EGDWFCPECALD 377
L CD C A+H C+ +++VP E +W+CPEC D
Sbjct: 206 LMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 241
>pdb|4GND|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
pdb|4GND|C Chain C, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
pdb|4GNE|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3 Peptide 1-7
pdb|4GNF|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3 Peptide 1-15
pdb|4GNG|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3k9me3 Peptide
pdb|4GNG|D Chain D, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3k9me3 Peptide
Length = 107
Score = 33.5 bits (75), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 331 NSDECCLCKMDGSLLCCD--GCPAAYHSKCVGVANVPEGDWFCP 372
+ D C C G L+ CD CP AYH C+ + P G W CP
Sbjct: 14 HEDYCFQCGDGGELVMCDKKDCPKAYHLLCLNLTQPPYGKWECP 57
>pdb|2JMI|A Chain A, Nmr Solution Structure Of Phd Finger Fragment Of Yeast
Yng1 Protein In Free State
pdb|2JMJ|A Chain A, Nmr Solution Structure Of The Phd Domain From The Yeast
Yng1 Protein In Complex With H3(1-9)k4me3 Peptide
Length = 90
Score = 33.1 bits (74), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 324 VDDANDWNSDECCLCK--MDGSLLCCD--GCPAA-YHSKCVGVANVPEGDWFC 371
V + N+ + C C+ G ++ CD CP +H CVG+ P+G W+C
Sbjct: 17 VTEGNNNQEEVYCFCRNVSYGPMVACDNPACPFEWFHYGCVGLKQAPKGKWYC 69
>pdb|1WEN|A Chain A, Solution Structure Of Phd Domain In Ing1-Like Protein
Bac25079
Length = 71
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 354 YHSKCVGVANVPEGDWFCPECA 375
+H CVG+ P G WFCP C+
Sbjct: 42 FHFACVGLTTKPRGKWFCPRCS 63
>pdb|1WES|A Chain A, Solution Structure Of Phd Domain In Inhibitor Of Growth
Family, Member 1-Like
Length = 71
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 327 ANDWNSDECCLCKM--DGSLLCCDG--CPAA-YHSKCVGVANVPEGDWFCPECALD 377
A D N CLC G ++ CD CP +H CV + P+G W+CP+C D
Sbjct: 10 AIDPNEPTYCLCNQVSYGEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRGD 65
>pdb|3KV4|A Chain A, Structure Of Phf8 In Complex With Histone H3
Length = 447
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 336 CLCKMDGS----LLCCDGCPAAYHSKCVGVANVPEGD---WFCPECALDRHKPWMKPRK 387
CLC++ ++ CD C +H CVGV D + CP C + MK R+
Sbjct: 8 CLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHGPSIMKKRR 66
>pdb|3KQI|A Chain A, Crystal Structure Of Phf2 Phd Domain Complexed With
H3k4me3 Peptide
Length = 75
Score = 32.3 bits (72), Expect = 2.0, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 336 CLCKMDGS----LLCCDGCPAAYHSKCVGV--ANVPEGD-WFCPECALDRHKPWMKPRKS 388
C+C++ ++ CD C +H CVGV P+ D + CP C K +K +++
Sbjct: 13 CVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTHGKSTLKKKRT 72
>pdb|1E5I|A Chain A, Delta-R306 Deacetoxycephalosporin C Synthase Complexed
With Iron And 2-Oxoglutarate
Length = 306
Score = 32.0 bits (71), Expect = 2.2, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 7/43 (16%)
Query: 956 RKCLKEEGVKYLVDFG----KRRSVPDIVI---RHGSMAEESS 991
R+CL+++G+ YL D G + +S DIVI HGS AE+ +
Sbjct: 23 RRCLRDKGLFYLTDCGLTDTELKSAKDIVIDFFEHGSEAEKRA 65
>pdb|1E5H|A Chain A, Delta-R307a Deacetoxycephalosporin C Synthase Complexed
With Succinate And Carbon Dioxide
Length = 308
Score = 32.0 bits (71), Expect = 2.2, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 7/43 (16%)
Query: 956 RKCLKEEGVKYLVDFG----KRRSVPDIVI---RHGSMAEESS 991
R+CL+++G+ YL D G + +S DIVI HGS AE+ +
Sbjct: 23 RRCLRDKGLFYLTDCGLTDTELKSAKDIVIDFFEHGSEAEKRA 65
>pdb|1HJF|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
pdb|1HJG|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
Length = 311
Score = 32.0 bits (71), Expect = 2.3, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 7/43 (16%)
Query: 956 RKCLKEEGVKYLVDFG----KRRSVPDIVI---RHGSMAEESS 991
R+CL+++G+ YL D G + +S DIVI HGS AE+ +
Sbjct: 23 RRCLRDKGLFYLTDCGLTDTELKSAKDIVIDFFEHGSEAEKRA 65
>pdb|2LV9|A Chain A, Solution Nmr Structure Of The Phd Domain Of Human Mll5,
Northeast Structural Genomics Consortium Target Hr6512a
Length = 98
Score = 32.0 bits (71), Expect = 2.5, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 9/60 (15%)
Query: 336 CLCKM---DGSLLCCDGCPAAYHSKCVGV--ANVPEGDWFCPECA---LDRHKPWMKPRK 387
C+C DG ++CCD C H C+G+ ++P+ + C C LD+ + + R+
Sbjct: 31 CICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPD-TYLCERCQPRNLDKERAVLLQRR 89
>pdb|3KV5|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With N-Oxalylglycine
pdb|3KV5|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With N-Oxalylglycine
pdb|3KV6|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With Alpha-Ketoglutarate
pdb|3KV6|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With Alpha-Ketoglutarate
Length = 488
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 336 CLCK----MDGSLLCCDGCPAAYHSKCVGVANVPEGD---WFCPECALDRHKPWMKPRKS 388
C+C+ ++ ++ CD C +H CVGV D + CP CA+ MK R++
Sbjct: 40 CVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLHGSSLMKKRRN 99
Query: 389 LRGAELLGVD 398
+ +D
Sbjct: 100 WHRHDYTEID 109
>pdb|1P3O|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3O|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 102
Score = 31.6 bits (70), Expect = 3.1, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 53 RKKRKAVDDINSVTKPVLRRSTRRGSAR 80
R ++ D+I +TKP +RR RRG A+
Sbjct: 17 RHRKVLRDNIQGITKPAIRRLARRGGAK 44
>pdb|1FP0|A Chain A, Solution Structure Of The Phd Domain From The Kap-1
Corepressor
Length = 88
Score = 31.2 bits (69), Expect = 3.6, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 335 CCLCKMDGSLLCCDGCPAAYHSKC--VGVANVPEGDWFCPEC 374
C +C+ G L+ C+ C +H C + +VP +W C C
Sbjct: 28 CRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLC 69
>pdb|3QZV|A Chain A, Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With
Histone H4k12ac Peptide
Length = 174
Score = 31.2 bits (69), Expect = 4.1, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
Query: 336 CLCKM--DGS--LLCCDGCPAAYHSKCVGVANVPE---GDWFCPEC 374
C+CK D S + CD C YH +CVG+ ++ CP+C
Sbjct: 11 CICKTPYDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQC 56
>pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e
Mutant From Human Bptf In The H3(1-9)k4me2 Bound State
Length = 174
Score = 31.2 bits (69), Expect = 4.3, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
Query: 336 CLCKM--DGS--LLCCDGCPAAYHSKCVGVANVPE---GDWFCPEC 374
C+CK D S + CD C YH +CVG+ ++ CP+C
Sbjct: 11 CICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQC 56
>pdb|1W28|A Chain A, Conformational Flexibility Of The C-Terminus With
Implications For Substrate Binding And Catalysis In A
New Crystal Form Of Deacetoxycephalosporin C Synthase
pdb|1W2A|X Chain X, Deacetoxycephalosporin C Synthase (With His-Tag) Complexed
With Fe(Ii) And Ethylene Glycol
pdb|1W2N|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Ampicillin
pdb|1W2O|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Deacetoxycephalosporin C
Length = 331
Score = 30.8 bits (68), Expect = 4.6, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 7/43 (16%)
Query: 956 RKCLKEEGVKYLVDFG----KRRSVPDIVI---RHGSMAEESS 991
R+CL+++G+ YL D G + +S D+VI HGS AE+ +
Sbjct: 43 RRCLRDKGLFYLTDCGLTDTELKSAKDLVIDFFEHGSEAEKRA 85
>pdb|1UNB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Ampicillin
pdb|1UO9|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Succinate
pdb|1UOB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Penicillin G
pdb|1UOF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Penicillin G
pdb|1UOG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Deacetoxycephalosporin C
pdb|1DCS|A Chain A, Deacetoxycephalosporin C Synthase From S. Clavuligerus
pdb|1RXF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
pdb|1RXG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
And 2- Oxoglutarate
pdb|2JB8|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
5-hydroxy- 4-keto Valeric Acid
Length = 311
Score = 30.8 bits (68), Expect = 4.7, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 7/43 (16%)
Query: 956 RKCLKEEGVKYLVDFG----KRRSVPDIVI---RHGSMAEESS 991
R+CL+++G+ YL D G + +S D+VI HGS AE+ +
Sbjct: 23 RRCLRDKGLFYLTDCGLTDTELKSAKDLVIDFFEHGSEAEKRA 65
>pdb|2F6J|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6N|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2F6N|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2FSA|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
Length = 174
Score = 30.8 bits (68), Expect = 5.0, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
Query: 336 CLCKM--DGS--LLCCDGCPAAYHSKCVGVANVPE---GDWFCPEC 374
C+CK D S + CD C YH +CVG+ ++ CP+C
Sbjct: 11 CICKTPYDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQC 56
>pdb|1P3I|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 102
Score = 30.8 bits (68), Expect = 5.5, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 53 RKKRKAVDDINSVTKPVLRRSTRRGSARY 81
R ++ D+I +TKP +RR RRG ++
Sbjct: 17 RHRKVLRDNIQGITKPAIRRLARRGGVKH 45
>pdb|4EWV|A Chain A, Crystal Structure Of Gh3.12 In Complex With Ampcpp
pdb|4EWV|B Chain B, Crystal Structure Of Gh3.12 In Complex With Ampcpp
pdb|4EPM|A Chain A, Crystal Structure Of Arabidopsis Gh3.12 (Pbs3) In Complex
With Amp
pdb|4EQL|A Chain A, Crystal Structure Of Gh3.12 In Complex With Amp And
Salicylate
pdb|4EQL|B Chain B, Crystal Structure Of Gh3.12 In Complex With Amp And
Salicylate
Length = 581
Score = 30.4 bits (67), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 422 ILNYYCRDDLNFVIDVLKSSDTFYGGIINAICKQWDITVS 461
+LNYYC +DL V SS+T +G ++ +CK D++ +
Sbjct: 316 MLNYYC-NDLPLVSTTYGSSETTFGINLDPLCKPEDVSYT 354
>pdb|2KWJ|A Chain A, Solution Structures Of The Double Phd Fingers Of Human
Transcriptional Protein Dpf3 Bound To A Histone Peptide
Containing Acetylation At Lysine 14
pdb|2KWK|A Chain A, Solution Structures Of The Double Phd Fingers Of Human
Transcriptional Protein Dpf3b Bound To A H3 Peptide Wild
Type
pdb|2KWN|A Chain A, Solution Structure Of The Double Phd (Plant Homeodomain)
Fingers Of Human Transcriptional Protein Dpf3b Bound To
A Histone H4 Peptide Containing Acetylation At Lysine 16
pdb|2KWO|A Chain A, Solution Structure Of The Double Phd (Plant Homeodomain)
Fingers Of Human Transcriptional Protein Dpf3b Bound To
A Histone H4 Peptide Containing N-Terminal Acetylation
At Serine 1
Length = 114
Score = 30.0 bits (66), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 341 DGSLLCCDGCPAAYHSKCVG--VANVPEGDWFCPEC 374
D LL CD C YH C+ VA PEG W C C
Sbjct: 70 DDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLC 105
>pdb|2YFW|B Chain B, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|D Chain D, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|F Chain F, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|H Chain H, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
Length = 103
Score = 30.0 bits (66), Expect = 8.2, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 53 RKKRKAVDDINSVTKPVLRRSTRRGSARYKDLSSKISCEVNDAM 96
R ++ D+I +TKP +RR RRG K +S I EV + +
Sbjct: 18 RHRKILRDNIQGITKPAIRRLARRGGV--KRISGLIYEEVRNVL 59
>pdb|2FUI|A Chain A, Nmr Solution Structure Of Phd Finger Fragment Of Human
Bptf In Free State
pdb|2FUU|A Chain A, Nmr Solution Structure Of The Phd Domain From The Human
Bptf In Complex With H3(1-15)k4me3 Peptide
Length = 62
Score = 30.0 bits (66), Expect = 8.4, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
Query: 336 CLCKM--DGS--LLCCDGCPAAYHSKCVGVANVPE---GDWFCPEC 374
C+CK D S + CD C YH +CVG+ ++ CP+C
Sbjct: 11 CICKTPYDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQC 56
>pdb|1P3G|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3G|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 102
Score = 30.0 bits (66), Expect = 9.0, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 53 RKKRKAVDDINSVTKPVLRRSTRRGSAR 80
R ++ D+I +TKP +RR RRG +
Sbjct: 17 RHRKVLRDNIQGITKPAIRRLARRGGVK 44
>pdb|1P3B|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3B|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 102
Score = 30.0 bits (66), Expect = 9.0, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 53 RKKRKAVDDINSVTKPVLRRSTRRGSAR 80
R ++ D+I +TKP +RR RRG +
Sbjct: 17 RHRKVLRDNIQGITKPAIRRLARRGGVK 44
>pdb|3AZN|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k91q Mutation
pdb|3AZN|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k91q Mutation
Length = 106
Score = 30.0 bits (66), Expect = 9.0, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 53 RKKRKAVDDINSVTKPVLRRSTRRGSAR 80
R ++ D+I +TKP +RR RRG +
Sbjct: 21 RHRKVLRDNIQGITKPAIRRLARRGGVK 48
>pdb|3AZM|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k79q Mutation
pdb|3AZM|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k79q Mutation
Length = 106
Score = 30.0 bits (66), Expect = 9.0, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 53 RKKRKAVDDINSVTKPVLRRSTRRGSAR 80
R ++ D+I +TKP +RR RRG +
Sbjct: 21 RHRKVLRDNIQGITKPAIRRLARRGGVK 48
>pdb|3AZL|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k77q Mutation
pdb|3AZL|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k77q Mutation
Length = 106
Score = 30.0 bits (66), Expect = 9.0, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 53 RKKRKAVDDINSVTKPVLRRSTRRGSAR 80
R ++ D+I +TKP +RR RRG +
Sbjct: 21 RHRKVLRDNIQGITKPAIRRLARRGGVK 48
>pdb|3AZK|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k59q Mutation
pdb|3AZK|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k59q Mutation
Length = 106
Score = 30.0 bits (66), Expect = 9.0, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 53 RKKRKAVDDINSVTKPVLRRSTRRGSAR 80
R ++ D+I +TKP +RR RRG +
Sbjct: 21 RHRKVLRDNIQGITKPAIRRLARRGGVK 48
>pdb|2PYO|B Chain B, Drosophila Nucleosome Core
pdb|2PYO|F Chain F, Drosophila Nucleosome Core
Length = 102
Score = 30.0 bits (66), Expect = 9.0, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 53 RKKRKAVDDINSVTKPVLRRSTRRGSAR 80
R ++ D+I +TKP +RR RRG +
Sbjct: 17 RHRKVLRDNIQGITKPAIRRLARRGGVK 44
>pdb|2NQB|B Chain B, Drosophila Nucleosome Structure
pdb|2NQB|F Chain F, Drosophila Nucleosome Structure
Length = 103
Score = 30.0 bits (66), Expect = 9.0, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 53 RKKRKAVDDINSVTKPVLRRSTRRGSAR 80
R ++ D+I +TKP +RR RRG +
Sbjct: 18 RHRKVLRDNIQGITKPAIRRLARRGGVK 45
>pdb|1EQZ|D Chain D, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1EQZ|H Chain H, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1F66|B Chain B, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
pdb|1F66|F Chain F, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
pdb|1HQ3|D Chain D, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1HQ3|H Chain H, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1TZY|D Chain D, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|1TZY|H Chain H, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|2CV5|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
pdb|2CV5|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
pdb|2ARO|D Chain D, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
pdb|2ARO|H Chain H, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
pdb|1U35|B Chain B, Crystal Structure Of The Nucleosome Core Particle
Containing The Histone Domain Of Macroh2a
pdb|1U35|F Chain F, Crystal Structure Of The Nucleosome Core Particle
Containing The Histone Domain Of Macroh2a
pdb|2F8N|B Chain B, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
pdb|2F8N|F Chain F, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
pdb|3NQU|B Chain B, Crystal Structure Of Partially Trypsinized (Cenp-AH4)2
HETEROTETRAMER
pdb|3R45|B Chain B, Structure Of A Cenp-A-Histone H4 Heterodimer In Complex
With Chaperone Hjurp
pdb|4HGA|C Chain C, Structure Of The Variant Histone H3.3-H4 Heterodimer In
Complex With Its Chaperone Daxx
Length = 103
Score = 30.0 bits (66), Expect = 9.0, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 53 RKKRKAVDDINSVTKPVLRRSTRRGSAR 80
R ++ D+I +TKP +RR RRG +
Sbjct: 18 RHRKVLRDNIQGITKPAIRRLARRGGVK 45
>pdb|3A6N|B Chain B, The Nucleosome Containing A Testis-Specific Histone
Variant, Human H3t
pdb|3A6N|F Chain F, The Nucleosome Containing A Testis-Specific Histone
Variant, Human H3t
pdb|3AFA|B Chain B, The Human Nucleosome Structure
pdb|3AFA|F Chain F, The Human Nucleosome Structure
pdb|3AV1|B Chain B, The Human Nucleosome Structure Containing The Histone
Variant H3.2
pdb|3AV1|F Chain F, The Human Nucleosome Structure Containing The Histone
Variant H3.2
pdb|3AV2|B Chain B, The Human Nucleosome Structure Containing The Histone
Variant H3.3
pdb|3AV2|F Chain F, The Human Nucleosome Structure Containing The Histone
Variant H3.3
pdb|3AN2|B Chain B, The Structure Of The Centromeric Nucleosome Containing
Cenp-A
pdb|3AN2|F Chain F, The Structure Of The Centromeric Nucleosome Containing
Cenp-A
pdb|3AYW|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k56q Mutation
pdb|3AYW|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k56q Mutation
pdb|3AZE|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k64q Mutation
pdb|3AZE|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k64q Mutation
pdb|3AZF|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k79q Mutation
pdb|3AZF|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k79q Mutation
pdb|3AZG|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k115q Mutation
pdb|3AZG|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k115q Mutation
pdb|3AZH|B Chain B, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k122q Mutation
pdb|3AZH|F Chain F, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k122q Mutation
Length = 106
Score = 30.0 bits (66), Expect = 9.2, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 53 RKKRKAVDDINSVTKPVLRRSTRRGSAR 80
R ++ D+I +TKP +RR RRG +
Sbjct: 21 RHRKVLRDNIQGITKPAIRRLARRGGVK 48
>pdb|1KX3|B Chain B, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX3|F Chain F, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX4|B Chain B, X-Ray Structure Of The Nucleosome Core Particle,
Ncp146b, At 2.6 A Resolution
pdb|1KX4|F Chain F, X-Ray Structure Of The Nucleosome Core Particle,
Ncp146b, At 2.6 A Resolution
pdb|1KX5|B Chain B, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|1KX5|F Chain F, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|1M18|B Chain B, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M18|F Chain F, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|B Chain B, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|F Chain F, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|B Chain B, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|F Chain F, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1P34|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P34|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3A|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3A|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3K|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3K|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3L|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3L|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3M|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3M|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1S32|B Chain B, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|1S32|F Chain F, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|1ZBB|B Chain B, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|F Chain F, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|BB Chain b, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|FF Chain f, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZLA|B Chain B, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
Peptide Bound To The Nucleosomal Core
pdb|1ZLA|F Chain F, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
Peptide Bound To The Nucleosomal Core
pdb|2FJ7|B Chain B, Crystal Structure Of Nucleosome Core Particle Containing
A Poly (Da.Dt) Sequence Element
pdb|2FJ7|F Chain F, Crystal Structure Of Nucleosome Core Particle Containing
A Poly (Da.Dt) Sequence Element
pdb|2IO5|C Chain C, Crystal Structure Of The Cia- Histone H3-H4 Complex
pdb|2NZD|B Chain B, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|2NZD|F Chain F, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|3B6F|B Chain B, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6F|F Chain F, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6G|B Chain B, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3B6G|F Chain F, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3C1C|B Chain B, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1C|F Chain F, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C9K|D Chain D, Model Of Histone Octamer Tubular Crystals
pdb|3C9K|H Chain H, Model Of Histone Octamer Tubular Crystals
pdb|3KUY|B Chain B, Dna Stretching In The Nucleosome Facilitates Alkylation
By An Intercalating Antitumor Agent
pdb|3KUY|F Chain F, Dna Stretching In The Nucleosome Facilitates Alkylation
By An Intercalating Antitumor Agent
pdb|3LJA|B Chain B, Using Soft X-Rays For A Detailed Picture Of Divalent
Metal Binding In The Nucleosome
pdb|3LJA|F Chain F, Using Soft X-Rays For A Detailed Picture Of Divalent
Metal Binding In The Nucleosome
pdb|3LEL|B Chain B, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|F Chain F, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|L Chain L, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|P Chain P, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3MGP|B Chain B, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGP|F Chain F, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGQ|B Chain B, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGQ|F Chain F, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGR|B Chain B, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGR|F Chain F, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGS|B Chain B, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3MGS|F Chain F, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3KXB|B Chain B, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
pdb|3KXB|F Chain F, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
pdb|3MVD|B Chain B, Crystal Structure Of The Chromatin Factor Rcc1 In
Complex With The Nucleosome Core Particle
pdb|3MVD|F Chain F, Crystal Structure Of The Chromatin Factor Rcc1 In
Complex With The Nucleosome Core Particle
pdb|3LZ0|B Chain B, Crystal Structure Of Nucleosome Core Particle Composed
Of The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ0|F Chain F, Crystal Structure Of Nucleosome Core Particle Composed
Of The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ1|B Chain B, Crystal Structure Of Nucleosome Core Particle Composed
Of The Widom 601 Dna Sequence (Orientation 2)
pdb|3LZ1|F Chain F, Crystal Structure Of Nucleosome Core Particle Composed
Of The Widom 601 Dna Sequence (Orientation 2)
pdb|3O62|B Chain B, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
pdb|3O62|F Chain F, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
pdb|3MNN|B Chain B, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
pdb|3MNN|F Chain F, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
pdb|3TU4|B Chain B, Crystal Structure Of The Sir3 Bah Domain In Complex With
A Nucleosome Core Particle.
pdb|3TU4|F Chain F, Crystal Structure Of The Sir3 Bah Domain In Complex With
A Nucleosome Core Particle.
pdb|3REH|B Chain B, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REH|F Chain F, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REI|B Chain B, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REI|F Chain F, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REJ|B Chain B, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REJ|F Chain F, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REK|B Chain B, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REK|F Chain F, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REL|B Chain B, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REL|F Chain F, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3UT9|B Chain B, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UT9|F Chain F, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UTA|B Chain B, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTA|F Chain F, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTB|B Chain B, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
pdb|3UTB|F Chain F, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
pdb|4H9N|B Chain B, Complex Structure 1 Of DaxxH3.3(SUB5)H4
pdb|4H9O|B Chain B, Complex Structure 2 Of DaxxH3.3(SUB5,G90M)H4
pdb|4H9P|B Chain B, Complex Structure 3 Of DaxxH3.3(SUB5,G90A)H4
pdb|4H9Q|B Chain B, Complex Structure 4 Of Daxx(E225a)H3.3(SUB5)H4
pdb|4H9R|B Chain B, Complex Structure 5 Of Daxx(E225a)H3.3(SUB5,G90A)H4
Length = 102
Score = 30.0 bits (66), Expect = 9.3, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 53 RKKRKAVDDINSVTKPVLRRSTRRGSAR 80
R ++ D+I +TKP +RR RRG +
Sbjct: 17 RHRKVLRDNIQGITKPAIRRLARRGGVK 44
>pdb|1P3F|B Chain B, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3F|F Chain F, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 102
Score = 30.0 bits (66), Expect = 10.0, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 53 RKKRKAVDDINSVTKPVLRRSTRRGSAR 80
R ++ D+I +TKP +RR RRG +
Sbjct: 17 RHRKVLRDNIQGITKPAIRRLARRGGVK 44
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,336,653
Number of Sequences: 62578
Number of extensions: 1365597
Number of successful extensions: 3127
Number of sequences better than 100.0: 85
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 3053
Number of HSP's gapped (non-prelim): 91
length of query: 1306
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1196
effective length of database: 8,089,757
effective search space: 9675349372
effective search space used: 9675349372
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)