Query 000745
Match_columns 1306
No_of_seqs 335 out of 1262
Neff 4.0
Searched_HMMs 29240
Date Tue Mar 26 16:55:16 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000745.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_516-520//hhsearch_pdb/000745hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5n_A E3 ubiquitin-protein li 1.0 1 1 110.5 4.4 53 327-379 2-56 (207)
2 3o36_A Transcription intermedi 1.0 1 1 106.4 4.7 50 330-379 2-53 (184)
3 1fp0_A KAP-1 corepressor; PHD 1.0 1 1 101.4 5.2 54 325-378 18-73 (88)
4 2ro1_A Transcription intermedi 1.0 1 1 100.6 3.9 47 332-378 2-50 (189)
5 2lbm_A Transcriptional regulat 1.0 1 1 98.8 1.7 56 324-379 55-119 (142)
6 2l43_A N-teminal domain from h 1.0 1 1 96.4 3.0 52 328-379 21-77 (88)
7 1xwh_A Autoimmune regulator; P 1.0 1 1 95.9 3.5 51 329-379 5-57 (66)
8 2ku3_A Bromodomain-containing 1.0 1 1 95.5 1.4 53 328-380 12-69 (71)
9 1mm2_A MI2-beta; PHD, zinc fin 1.0 1 1 95.4 5.1 53 327-379 4-58 (61)
10 2l5u_A Chromodomain-helicase-D 1.0 1 1 94.9 4.1 53 327-379 6-60 (61)
No 1
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=1.00 E-value=1 Score=110.46 Aligned_cols=53 Identities=38% Similarity=0.937 Sum_probs=47.2
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCC
Q ss_conf 789888234412468942721798885533433788--99998830643643777
Q 000745 327 ANDWNSDECCLCKMDGSLLCCDGCPAAYHSKCVGVA--NVPEGDWFCPECALDRH 379 (1306)
Q Consensus 327 ~~d~ndD~C~VC~~gGeLLcCD~CprafHl~CL~P~--~vPeG~W~Cp~C~~~~~ 379 (1306)
+.+.+++.|.+|+++|+||+||+|+++||+.|++|+ .+|+|+|+|+.|.....
T Consensus 2 ~~d~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 2 DDDPNEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp -CCSSCSSBTTTCCCEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCEECCCC
T ss_conf 8788889898889999367769999843871589998888998878684268664
No 2
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=1.00 E-value=1 Score=106.41 Aligned_cols=50 Identities=38% Similarity=0.957 Sum_probs=45.2
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCC
Q ss_conf 888234412468942721798885533433788--99998830643643777
Q 000745 330 WNSDECCLCKMDGSLLCCDGCPAAYHSKCVGVA--NVPEGDWFCPECALDRH 379 (1306)
Q Consensus 330 ~ndD~C~VC~~gGeLLcCD~CprafHl~CL~P~--~vPeG~W~Cp~C~~~~~ 379 (1306)
.|++.|.+|+++|+||+||+|+++||+.|++|+ .+|+|+|+|+.|.....
T Consensus 2 ~~~~~C~~C~~~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 2 PNEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp CSCSSCTTTCCCSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCC
T ss_conf 9999541179999056629999530811368987879998878925568655
No 3
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=1.00 E-value=1 Score=101.41 Aligned_cols=54 Identities=28% Similarity=0.652 Sum_probs=47.3
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCC
Q ss_conf 34789888234412468942721798885533433788--9999883064364377
Q 000745 325 DDANDWNSDECCLCKMDGSLLCCDGCPAAYHSKCVGVA--NVPEGDWFCPECALDR 378 (1306)
Q Consensus 325 ~~~~d~ndD~C~VC~~gGeLLcCD~CprafHl~CL~P~--~vPeG~W~Cp~C~~~~ 378 (1306)
+...+.+++.|.+|+++|+||+||.|+++||++|+.|+ .+|+|+|+|+.|....
T Consensus 18 ~~~~d~n~~~C~vC~~~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~ 73 (88)
T 1fp0_A 18 FGTLDDSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 73 (88)
T ss_dssp CCSSSSSSSCCSSSCSSSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 43338899818376999977889999972416328989787869976772644877
No 4
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=100.56 Aligned_cols=47 Identities=30% Similarity=0.793 Sum_probs=43.3
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCC
Q ss_conf 8234412468942721798885533433788--9999883064364377
Q 000745 332 SDECCLCKMDGSLLCCDGCPAAYHSKCVGVA--NVPEGDWFCPECALDR 378 (1306)
Q Consensus 332 dD~C~VC~~gGeLLcCD~CprafHl~CL~P~--~vPeG~W~Cp~C~~~~ 378 (1306)
++.|.+|+++|+||+||+|+++||++|+.|+ .+|+|+|+|+.|....
T Consensus 2 ~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCCCCCCCCCCCEEECCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 8827647999945689999833310228987566899878892704777
No 5
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=1.00 E-value=1 Score=98.76 Aligned_cols=56 Identities=27% Similarity=0.705 Sum_probs=47.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC---------CCCCCCCCCCCCCCCC
Q ss_conf 0347898882344124689427217988855334337889---------9998830643643777
Q 000745 324 VDDANDWNSDECCLCKMDGSLLCCDGCPAAYHSKCVGVAN---------VPEGDWFCPECALDRH 379 (1306)
Q Consensus 324 i~~~~d~ndD~C~VC~~gGeLLcCD~CprafHl~CL~P~~---------vPeG~W~Cp~C~~~~~ 379 (1306)
...+.|.++++|.+|++||+|+|||+||++||+.|+.|+. .|+|+|+|+.|..+..
T Consensus 55 ~~~d~Dg~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~pl 119 (142)
T 2lbm_A 55 ISRDSDGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPEPL 119 (142)
T ss_dssp CCBCTTSCBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCCTT
T ss_pred CEECCCCCCCEECCCCCCCCEEECCCCCCEEEHHHCCCCCCHHHHHHCCCCCCCCEEECCCCCCH
T ss_conf 13168888780000399984786899897312745488887366654246899988212668507
No 6
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=96.42 Aligned_cols=52 Identities=35% Similarity=0.802 Sum_probs=46.0
Q ss_pred CCCCCCCCCCCCCCC-----CEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 898882344124689-----4272179888553343378899998830643643777
Q 000745 328 NDWNSDECCLCKMDG-----SLLCCDGCPAAYHSKCVGVANVPEGDWFCPECALDRH 379 (1306)
Q Consensus 328 ~d~ndD~C~VC~~gG-----eLLcCD~CprafHl~CL~P~~vPeG~W~Cp~C~~~~~ 379 (1306)
...+++.|.+|+++| +||+||.|+++||++|++|+.+|+|+|+|+.|.....
T Consensus 21 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 21 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHCCCCCCCCCCCCCEECCCCCCCCC
T ss_conf 678899177689989779888878999973552204898866899509812528444
No 7
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=1.00 E-value=1 Score=95.85 Aligned_cols=51 Identities=41% Similarity=1.124 Sum_probs=45.7
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCC
Q ss_conf 9888234412468942721798885533433788--99998830643643777
Q 000745 329 DWNSDECCLCKMDGSLLCCDGCPAAYHSKCVGVA--NVPEGDWFCPECALDRH 379 (1306)
Q Consensus 329 d~ndD~C~VC~~gGeLLcCD~CprafHl~CL~P~--~vPeG~W~Cp~C~~~~~ 379 (1306)
+.+++.|.+|+++|+||+||+|+++||+.|++|+ .+|+|+|+|+.|...+.
T Consensus 5 ~~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 57 (66)
T 1xwh_A 5 QKNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATV 57 (66)
T ss_dssp CSCCCSBSSSSCCSSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTCC
T ss_pred CCCCCCCCCCCCCCCEEECCCCCHHHCCCCCCCCCCCCCCCCEECCCCCCCCC
T ss_conf 89989995579999788818998420654568885768788709912408144
No 8
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=95.47 Aligned_cols=53 Identities=34% Similarity=0.804 Sum_probs=45.7
Q ss_pred CCCCCCCCCCCCCCC-----CEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 898882344124689-----42721798885533433788999988306436437778
Q 000745 328 NDWNSDECCLCKMDG-----SLLCCDGCPAAYHSKCVGVANVPEGDWFCPECALDRHK 380 (1306)
Q Consensus 328 ~d~ndD~C~VC~~gG-----eLLcCD~CprafHl~CL~P~~vPeG~W~Cp~C~~~~~~ 380 (1306)
...+++.|.+|++++ +||+||.|+++||++|++|+.+|+|+|+|+.|...+.+
T Consensus 12 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~~~~ 69 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRAR 69 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 8999798878899887788888888899870003048988678997699558384844
No 9
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=1.00 E-value=1 Score=95.39 Aligned_cols=53 Identities=40% Similarity=1.126 Sum_probs=46.6
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCC
Q ss_conf 789888234412468942721798885533433788--99998830643643777
Q 000745 327 ANDWNSDECCLCKMDGSLLCCDGCPAAYHSKCVGVA--NVPEGDWFCPECALDRH 379 (1306)
Q Consensus 327 ~~d~ndD~C~VC~~gGeLLcCD~CprafHl~CL~P~--~vPeG~W~Cp~C~~~~~ 379 (1306)
+.+.+++.|.+|+++|+||+||+|+++||++|++|+ .+|+|+|+|+.|.....
T Consensus 4 ~~d~~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 58 (61)
T 1mm2_A 4 GSDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL 58 (61)
T ss_dssp CSCSSCSSCTTTCCCSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCHHHCCCCCCCCCCCCCCCCCCCHHHCCCHH
T ss_conf 5368889578789989887848989777320237885768788519952457200
No 10
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=94.86 Aligned_cols=53 Identities=36% Similarity=0.925 Sum_probs=46.5
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCC
Q ss_conf 789888234412468942721798885533433788--99998830643643777
Q 000745 327 ANDWNSDECCLCKMDGSLLCCDGCPAAYHSKCVGVA--NVPEGDWFCPECALDRH 379 (1306)
Q Consensus 327 ~~d~ndD~C~VC~~gGeLLcCD~CprafHl~CL~P~--~vPeG~W~Cp~C~~~~~ 379 (1306)
..+.+++.|.+|+++|+||+||.|+++||++|++|+ .+|+|+|+|+.|..++.
T Consensus 6 ~~~~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~g~ 60 (61)
T 2l5u_A 6 YETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKEGI 60 (61)
T ss_dssp CSSCCCSSCTTTSCCSSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGGSC
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCHHHHHHCCCCCCCCCCCCCEECCCCCCCCC
T ss_conf 6579989986679999488879998466001269897878888419914232233
Done!