BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000746
(1303 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 177 bits (448), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 138/225 (61%), Gaps = 28/225 (12%)
Query: 640 AVSIKNGNFSWD-SKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDAS 698
+++++N F+W S PTL+ I IP G+LVA+VG G GK+SL+SA+L E+ + +
Sbjct: 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV-EGH 61
Query: 699 VVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEI 758
V I+G+VAYVPQ +WI N +LR+NILFG + + Y + AL DL++LP D TEI
Sbjct: 62 VAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEI 121
Query: 759 GERGVNISGGQKQRVSMARAVFNSC--------------------------IKEELRGKT 792
GE+GVN+SGGQKQRVS+ARAV+++ K L+ KT
Sbjct: 122 GEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKT 181
Query: 793 RILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLM 837
RILVT+ + +LP VD II++S G I E GS++EL F + +
Sbjct: 182 RILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFL 226
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 1257 PPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGEN 1301
PP L+G++F++ V +VG+ G GKSS+L+AL + E+++ E
Sbjct: 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSAL--LAEMDKVEG 60
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 131 bits (330), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 109/197 (55%), Gaps = 25/197 (12%)
Query: 654 SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISW 713
+P L NINL+I G ++AI G TG GKTSL+ +LGEL + + G V++ Q SW
Sbjct: 51 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEA-SEGIIKHSGRVSFCSQFSW 109
Query: 714 IFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRV 773
I T+++NI+FG +D +Y V LQ D+ ++D T +GE GV +SGGQ+ R+
Sbjct: 110 IMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARI 169
Query: 774 SMARA------------------------VFNSCIKEELRGKTRILVTNQLHFLPHVDRI 809
S+ARA VF SC+ + + KTRILVT+++ L D+I
Sbjct: 170 SLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKI 229
Query: 810 ILVSEGMIKEEGSFEEL 826
+++ +G G+F EL
Sbjct: 230 LILHQGSSYFYGTFSEL 246
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 1258 PVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302
PVL ++ + E + I G TG+GK+S+L + + ELE E I
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLL--MLILGELEASEGI 94
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 131 bits (330), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 109/197 (55%), Gaps = 25/197 (12%)
Query: 654 SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISW 713
+P L NINL+I G ++AI G TG GKTSL+ +LGEL + + G V++ Q SW
Sbjct: 51 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEA-SEGIIKHSGRVSFCSQFSW 109
Query: 714 IFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRV 773
I T+++NI+FG +D +Y V LQ D+ ++D T +GE GV +SGGQ+ R+
Sbjct: 110 IMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARI 169
Query: 774 SMARA------------------------VFNSCIKEELRGKTRILVTNQLHFLPHVDRI 809
S+ARA VF SC+ + + KTRILVT+++ L D+I
Sbjct: 170 SLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKI 229
Query: 810 ILVSEGMIKEEGSFEEL 826
+++ +G G+F EL
Sbjct: 230 LILHQGSSYFYGTFSEL 246
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 1258 PVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302
PVL ++ + E + I G TG+GK+S+L + + ELE E I
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLL--MLILGELEASEGI 94
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 129 bits (324), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 107/197 (54%), Gaps = 25/197 (12%)
Query: 654 SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISW 713
+P L +IN I G L+A+ G TG GKTSL+ ++GEL P + + G +++ Q SW
Sbjct: 33 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-SEGKIKHSGRISFCSQFSW 91
Query: 714 IFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRV 773
I T+++NI+FG +D +Y + L+ D+ ++D +GE G+ +SGGQ+ R+
Sbjct: 92 IMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARI 151
Query: 774 SMARAV------------------------FNSCIKEELRGKTRILVTNQLHFLPHVDRI 809
S+ARAV F SC+ + + KTRILVT+++ L D+I
Sbjct: 152 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKI 211
Query: 810 ILVSEGMIKEEGSFEEL 826
+++ EG G+F EL
Sbjct: 212 LILHEGSSYFYGTFSEL 228
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 1258 PVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENIH 1303
PVL ++F + + + + G TGAGK+S+L + +E G+ H
Sbjct: 34 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH 79
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 129 bits (323), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 108/200 (54%), Gaps = 25/200 (12%)
Query: 651 DSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQ 710
+ +P L +IN I G L+A+ G TG GKTSL+ ++GEL P + + G +++ Q
Sbjct: 18 EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-SEGKIKHSGRISFCSQ 76
Query: 711 ISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQK 770
SWI T+++NI+FG +D +Y + L+ D+ ++D +GE G+ +SGGQ+
Sbjct: 77 FSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQR 136
Query: 771 QRVSMARAV------------------------FNSCIKEELRGKTRILVTNQLHFLPHV 806
R+S+ARAV F SC+ + + KTRILVT+++ L
Sbjct: 137 ARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKA 196
Query: 807 DRIILVSEGMIKEEGSFEEL 826
D+I+++ EG G+F EL
Sbjct: 197 DKILILHEGSSYFYGTFSEL 216
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%)
Query: 1246 EDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENIH 1303
E+V + PVL ++F + + + + G TGAGK+S+L + +E G+ H
Sbjct: 10 ENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH 67
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 128 bits (322), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 108/197 (54%), Gaps = 25/197 (12%)
Query: 654 SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISW 713
+P L NINL+I G ++AI G TG GKTSL+ +LGEL + + G V++ Q SW
Sbjct: 51 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEA-SEGIIKHSGRVSFCSQFSW 109
Query: 714 IFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRV 773
I T+++NI+ G +D +Y V LQ D+ ++D T +GE GV +SGGQ+ R+
Sbjct: 110 IMPGTIKENIISGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARI 169
Query: 774 SMARA------------------------VFNSCIKEELRGKTRILVTNQLHFLPHVDRI 809
S+ARA VF SC+ + + KTRILVT+++ L D+I
Sbjct: 170 SLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKI 229
Query: 810 ILVSEGMIKEEGSFEEL 826
+++ +G G+F EL
Sbjct: 230 LILHQGSSYFYGTFSEL 246
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 1258 PVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302
PVL ++ + E + I G TG+GK+S+L + + ELE E I
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLL--MLILGELEASEGI 94
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 128 bits (322), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 108/197 (54%), Gaps = 25/197 (12%)
Query: 654 SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISW 713
+P L NINL+I G ++AI G TG GKTSL+ +LGEL + + G V++ Q SW
Sbjct: 51 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEA-SEGIIKHSGRVSFCSQFSW 109
Query: 714 IFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRV 773
I T+++NI+ G +D +Y V LQ D+ ++D T +GE GV +SGGQ+ R+
Sbjct: 110 IMPGTIKENIIRGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARI 169
Query: 774 SMARA------------------------VFNSCIKEELRGKTRILVTNQLHFLPHVDRI 809
S+ARA VF SC+ + + KTRILVT+++ L D+I
Sbjct: 170 SLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKI 229
Query: 810 ILVSEGMIKEEGSFEEL 826
+++ +G G+F EL
Sbjct: 230 LILHQGSSYFYGTFSEL 246
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 1258 PVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302
PVL ++ + E + I G TG+GK+S+L + + ELE E I
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLL--MLILGELEASEGI 94
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 125 bits (314), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 106/197 (53%), Gaps = 25/197 (12%)
Query: 654 SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISW 713
+P L +IN I G L+A+ G TG GKTSL+ ++GEL P + + G +++ Q SW
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-SEGKIKHSGRISFCSQFSW 109
Query: 714 IFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRV 773
I T+++NI+ G +D +Y + L+ D+ ++D +GE G+ +SGGQ+ R+
Sbjct: 110 IMPGTIKENIIAGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARI 169
Query: 774 SMARAV------------------------FNSCIKEELRGKTRILVTNQLHFLPHVDRI 809
S+ARAV F SC+ + + KTRILVT+++ L D+I
Sbjct: 170 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKI 229
Query: 810 ILVSEGMIKEEGSFEEL 826
+++ EG G+F EL
Sbjct: 230 LILHEGSSYFYGTFSEL 246
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 1258 PVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENIH 1303
PVL ++F + + + + G TGAGK+S+L + +E G+ H
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH 97
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 124 bits (311), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 108/197 (54%), Gaps = 26/197 (13%)
Query: 654 SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISW 713
+P L NINL+I G ++AI G TG GKTSL+ +LGEL + + G V++ Q SW
Sbjct: 51 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEA-SEGIIKHSGRVSFCSQFSW 109
Query: 714 IFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRV 773
I T+++NI+ G +D +Y V LQ D+ ++D T +GE GV +SGGQ+ R+
Sbjct: 110 IMPGTIKENII-GVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARI 168
Query: 774 SMARA------------------------VFNSCIKEELRGKTRILVTNQLHFLPHVDRI 809
S+ARA VF SC+ + + KTRILVT+++ L D+I
Sbjct: 169 SLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKI 228
Query: 810 ILVSEGMIKEEGSFEEL 826
+++ +G G+F EL
Sbjct: 229 LILHQGSSYFYGTFSEL 245
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 1258 PVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302
PVL ++ + E + I G TG+GK+S+L + + ELE E I
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLL--MLILGELEASEGI 94
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 123 bits (308), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 106/197 (53%), Gaps = 25/197 (12%)
Query: 654 SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISW 713
+P L +IN I G L+A+ G TG GKTSL+ ++GEL P + + G +++ Q SW
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-SEGKIKHSGRISFCSQFSW 109
Query: 714 IFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRV 773
I T+++NI+FG +D +Y + L+ D+ ++D +GE G+ +S GQ+ ++
Sbjct: 110 IMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKI 169
Query: 774 SMARAV------------------------FNSCIKEELRGKTRILVTNQLHFLPHVDRI 809
S+ARAV F SC+ + + KTRILVT+++ L D+I
Sbjct: 170 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKI 229
Query: 810 ILVSEGMIKEEGSFEEL 826
+++ EG G+F EL
Sbjct: 230 LILHEGSSYFYGTFSEL 246
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 1258 PVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENIH 1303
PVL ++F + + + + G TGAGK+S+L + +E G+ H
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH 97
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 121 bits (304), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 107/200 (53%), Gaps = 26/200 (13%)
Query: 651 DSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQ 710
+ +P L +IN I G L+A+ G TG GKTSL+ ++GEL P + + G +++ Q
Sbjct: 18 EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-SEGKIKHSGRISFCSQ 76
Query: 711 ISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQK 770
SWI T+++NI+ G +D +Y + L+ D+ ++D +GE G+ +SGGQ+
Sbjct: 77 FSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQR 135
Query: 771 QRVSMARAV------------------------FNSCIKEELRGKTRILVTNQLHFLPHV 806
R+S+ARAV F SC+ + + KTRILVT+++ L
Sbjct: 136 ARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKA 195
Query: 807 DRIILVSEGMIKEEGSFEEL 826
D+I+++ EG G+F EL
Sbjct: 196 DKILILHEGSSYFYGTFSEL 215
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 1258 PVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENIH 1303
PVL ++F + + + + G TGAGK+S+L + +E G+ H
Sbjct: 22 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH 67
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 120 bits (300), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 106/197 (53%), Gaps = 26/197 (13%)
Query: 654 SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISW 713
+P L +IN I G L+A+ G TG GKTSL+ ++GEL P + + G +++ Q SW
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-SEGKIKHSGRISFCSQNSW 109
Query: 714 IFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRV 773
I T+++NI+ G +D +Y + L+ D+ ++D +GE G+ +SGGQ+ R+
Sbjct: 110 IMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARI 168
Query: 774 SMARAV------------------------FNSCIKEELRGKTRILVTNQLHFLPHVDRI 809
S+ARAV F SC+ + + KTRILVT+++ L D+I
Sbjct: 169 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKI 228
Query: 810 ILVSEGMIKEEGSFEEL 826
+++ EG G+F EL
Sbjct: 229 LILHEGSSYFYGTFSEL 245
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 1258 PVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENIH 1303
PVL ++F + + + + G TGAGK+S+L + +E G+ H
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH 97
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 120 bits (300), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 106/197 (53%), Gaps = 26/197 (13%)
Query: 654 SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISW 713
+P L +IN I G L+A+ G TG GKTSL+ ++GEL P + + G +++ Q SW
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-SEGKIKHSGRISFCSQNSW 109
Query: 714 IFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRV 773
I T+++NI+ G +D +Y + L+ D+ ++D +GE G+ +SGGQ+ R+
Sbjct: 110 IMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARI 168
Query: 774 SMARAV------------------------FNSCIKEELRGKTRILVTNQLHFLPHVDRI 809
S+ARAV F SC+ + + KTRILVT+++ L D+I
Sbjct: 169 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKI 228
Query: 810 ILVSEGMIKEEGSFEEL 826
+++ EG G+F EL
Sbjct: 229 LILHEGSSYFYGTFSEL 245
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 1258 PVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENIH 1303
PVL ++F + + + + G TGAGK+S+L + +E G+ H
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH 97
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 116 bits (290), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 105/197 (53%), Gaps = 26/197 (13%)
Query: 654 SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISW 713
+P L +IN I G L+A+ G TG GKTSL+ ++GEL P + + G +++ Q SW
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-SEGKIKHSGRISFCSQFSW 109
Query: 714 IFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRV 773
I T+++NI+ G +D +Y + L+ D+ ++D +GE G+ +S GQ+ ++
Sbjct: 110 IMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKI 168
Query: 774 SMARAV------------------------FNSCIKEELRGKTRILVTNQLHFLPHVDRI 809
S+ARAV F SC+ + + KTRILVT+++ L D+I
Sbjct: 169 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKI 228
Query: 810 ILVSEGMIKEEGSFEEL 826
+++ EG G+F EL
Sbjct: 229 LILHEGSSYFYGTFSEL 245
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 1258 PVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENIH 1303
PVL ++F + + + + G TGAGK+S+L + +E G+ H
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH 97
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 97/386 (25%), Positives = 171/386 (44%), Gaps = 46/386 (11%)
Query: 489 KMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFL 548
++RKLT+E Q +E + + VK +A E + + L+ K
Sbjct: 184 RLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRW 243
Query: 549 SAFNSFILNSIPXX--XXXXSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQ 606
+A++ +N++ G + + G +T + +L PL L +
Sbjct: 244 NAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTT 303
Query: 607 VVNANVSLQRXXXXXXXXXRIL--MXXXXXXXXXXAVSIKNGNFSW-DSKSPTLSNINLD 663
+ + S+ R I + + I + +F + D+++P L +INL
Sbjct: 304 LTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLS 363
Query: 664 IPVGSLVAIVGGTGEGKTSLVS-----------AMLGELPPLKD-ASVVIRGTVAYVPQI 711
I G VA VG +G GK++L++ +L + +KD + +R + V Q
Sbjct: 364 IEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQD 423
Query: 712 SWIFNATLRKNILFGSEFDPAKYWKTVDVSALQ--HDLDL-LPDRDLTEIGERGVNISGG 768
+ +F+ T+++NIL G A + V+ + + HD + LP TE+GERGV +SGG
Sbjct: 424 NILFSDTVKENILLGRP--TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGG 481
Query: 769 QKQRVSMARAVFN-------------------SCIKEEL----RGKTRILVTNQLHFLPH 805
QKQR+S+AR N S I+E L + +T ++V ++L + H
Sbjct: 482 QKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH 541
Query: 806 VDRIILVSEGMIKEEGSFEEL-SKHG 830
D+I+++ G I E G+ EL +K G
Sbjct: 542 ADKIVVIENGHIVETGTHRELIAKQG 567
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/301 (22%), Positives = 128/301 (42%), Gaps = 22/301 (7%)
Query: 1008 FFHTNPIGRVINRFSRDLGDI-DRNVASFVNMFMNQLWQL--LSTFVLIGIVSTISLWAI 1064
F+ N +G+VI+R D+ D + +N++++ + + LS + + T++ I
Sbjct: 111 FYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFI 170
Query: 1065 MPXXXXXXXXXXXXQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKING 1124
P R++ R S + V E + G+S +++F D AK
Sbjct: 171 FPFYILTVYVFF---GRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFD 227
Query: 1125 KSMDNNIRFTLANTSSNRWLTIRLETLGGIM-IWLIATFAVMQNGRAENQVAFASTMGLL 1183
K N + L +T N + + T+ I I +I A + ++ + T+G L
Sbjct: 228 KKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLA-------ISGSITVGTL 280
Query: 1184 LSYTLNITNLLSGVLRQA----SRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPS 1239
++ + LL G LR+ + S +++RV ID + V + P
Sbjct: 281 AAF-VGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQ---PIEIK 336
Query: 1240 SGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERG 1299
G I + V +Y P+L ++ ++ E V VG +G GKS+++N + R ++ G
Sbjct: 337 QGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSG 396
Query: 1300 E 1300
+
Sbjct: 397 Q 397
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 94.0 bits (232), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 128/558 (22%), Positives = 233/558 (41%), Gaps = 77/558 (13%)
Query: 340 DLSQFVGPVLLNHLL-QSMQRGDPAWI---GYIYAFLIFVGVSFGVLTEAQYFQNVWRVG 395
DLSQ P LL ++ + + RGD + + G + + +G G+ G
Sbjct: 39 DLSQ---PTLLARIVDEGIARGDFSLVLKTGILMLIVALIGAVGGIGCTVFASYASQNFG 95
Query: 396 FRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQL-HGLWSAPFRI 454
LR L FRK L + F + + +T D LQ + L + AP
Sbjct: 96 ADLRRDL----FRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLF 151
Query: 455 TLSMVLLYQQXXXXXXXXXXXXXXXXXXQTFIISKMRKLTKEGLQWTDRRVSLTNEILAA 514
+V+ ++ K L ++ + TD + E L
Sbjct: 152 VGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLG 211
Query: 515 MDTVKCYAWEK----SFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIPXXXXXXSFGT 570
+ V+ + E+ +F+ +S+R +S F S I+ ++P + G
Sbjct: 212 VRVVRAFRREEYENENFRKANESLRRSIISAF----------SLIVFALPLFIFIVNMGM 261
Query: 571 FTLL--GGDLTPARAFTSLSLFAV------LRFPLNMLPNLLSQVVNANVSLQRXXXXXX 622
+L GG L S+ A + F L M+ N+L+ +V A+ S +R
Sbjct: 262 IAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLN 321
Query: 623 XXXRILMXXXXXXX--XXXAVSIKNGNFSW-DSKSPTLSNINLDIPVGSLVAIVGGTGEG 679
I +VS +N F + ++ P LS +N + GSLVA++G TG G
Sbjct: 322 EKPAIEEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSG 381
Query: 680 KTSLVSAMLGELPPLK--------DASVV----IRGTVAYVPQISWIFNATLRKNILFGS 727
K++L++ + + P + D V +RG ++ VPQ + +F+ T+++N+ +G
Sbjct: 382 KSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGR 441
Query: 728 EFDPAKYWKTVDVSALQ--HDLDL-LPDRDLTEIGERGVNISGGQKQRVSMARA------ 778
E A + V+ + + HD + LP+ + + G N SGGQKQR+S+ARA
Sbjct: 442 E--DATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPK 499
Query: 779 --VFNSC---------------IKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEG 821
+ + C +K +G T ++T ++ D+I+++ EG + G
Sbjct: 500 VLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFG 559
Query: 822 SFEELSKHGRLFQKLMEN 839
+ +EL +H + ++++ E+
Sbjct: 560 THKELLEHCKPYREIYES 577
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 62/110 (56%), Gaps = 10/110 (9%)
Query: 1190 ITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVV 1249
I N+L+ ++R ++ A+ L + +E P + E++ GS+ FE+V
Sbjct: 299 IGNILNFIVRASASAKRVLEVL----------NEKPAIEEADNALALPNVEGSVSFENVE 348
Query: 1250 LRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERG 1299
RY PVL G++F+V P V ++G TG+GKS+++N + R+++ ERG
Sbjct: 349 FRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERG 398
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 115/232 (49%), Gaps = 37/232 (15%)
Query: 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAM-------LGEL-- 691
+S ++ +F++D L +I+ + S++A G +G GK+++ S + GE+
Sbjct: 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI 61
Query: 692 --PPLKDASVVI-RGTVAYVPQISWIFNATLRKNILFGSEFD--PAKYWKTVDVSALQHD 746
P+ + S+ R + +V Q S I T+R+N+ +G E D W+ +D++ +
Sbjct: 62 DGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSF 121
Query: 747 LDLLPDRDLTEIGERGVNISGGQKQRVSMARA-----------------------VFNSC 783
++ +PD+ TE+GERGV ISGGQ+QR+++ARA +
Sbjct: 122 VENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKA 181
Query: 784 IKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQK 835
+ ++G+T +++ ++L + D+I + +G I G EL L+ K
Sbjct: 182 LDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAK 233
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 87.0 bits (214), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 117/235 (49%), Gaps = 40/235 (17%)
Query: 641 VSIKNGNFSWDSKS-PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAML-------GEL- 691
V +N F++ + P L NINL IP G VA+VG +G GK+++ S + GE+
Sbjct: 342 VEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEIL 401
Query: 692 ---PPLKDASVV-IRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDL 747
L++ ++ +R VA V Q +FN T+ NI + + + + + + + + +
Sbjct: 402 MDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAY-ARTEQYSREQIEEAARMAYAM 460
Query: 748 DLLPDRD---LTEIGERGVNISGGQKQRVSMARAVF-----------------------N 781
D + D T IGE GV +SGGQ+QR+++ARA+
Sbjct: 461 DFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQ 520
Query: 782 SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKL 836
+ + E + +T +++ ++L + D I++V +G+I E G+ +L +H ++ +L
Sbjct: 521 AALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRGVYAQL 575
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 36/62 (58%)
Query: 1239 SSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELER 1298
++G ++F +V Y P L ++ + + V +VGR+G+GKS++ + + R +++
Sbjct: 338 ATGDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDE 397
Query: 1299 GE 1300
GE
Sbjct: 398 GE 399
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 114/227 (50%), Gaps = 41/227 (18%)
Query: 644 KNGNFSWDSKS-PTLSNINLDIPVGSLVAIVGGTGEGKTSLVS-----------AMLGEL 691
+N F++ + P L NINL IP G VA+VG +G GK+++ S +L +
Sbjct: 345 RNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDG 404
Query: 692 PPLKDASVV-IRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLL 750
L++ ++ +R VA V Q +FN T+ NI + + ++ + + + + + +D +
Sbjct: 405 HDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSRE-QIEEAARMAYAMDFI 463
Query: 751 PDRD---LTEIGERGVNISGGQKQRVSMARAVF-----------------------NSCI 784
D T IGE GV +SGGQ+QR+++ARA+ + +
Sbjct: 464 NKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL 523
Query: 785 KEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEE-LSKHG 830
E + +T +++ ++L + D I++V +G+I E G+ E L++HG
Sbjct: 524 DELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHG 570
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 35/62 (56%)
Query: 1239 SSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELER 1298
++G ++F +V Y P L ++ + + V +VGR+G+GKS++ + + R +++
Sbjct: 338 ATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDE 397
Query: 1299 GE 1300
G
Sbjct: 398 GH 399
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 84.3 bits (207), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 97/452 (21%), Positives = 188/452 (41%), Gaps = 71/452 (15%)
Query: 641 VSIKNGNFSWDSKS--PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDAS 698
++++N +F++ S+ P L +NL + G VA+VG +G GK++++S +L LK
Sbjct: 416 ITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKI 475
Query: 699 VV------------IRGTVAYVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQH 745
+ +R VA V Q +FN T+ +NI G E + ++ +
Sbjct: 476 TIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEK 535
Query: 746 DLDLLPDRDLTEIGERGVNISGGQKQRVSMARA-----------------------VFNS 782
+ LP+ T +G+RG +SGGQKQR+++ARA +
Sbjct: 536 FIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQ 595
Query: 783 CIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLME---- 838
+ + +G+T I++ ++L + + D II G + E G L L+ L+
Sbjct: 596 ALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQGLYYDLVTAQTF 655
Query: 839 NAGKXXXXXXXXXKDDSINSNQEVSKPVANRAVQVNE-FPKNESYTKKGKRGRSVLVKQE 897
+++S+ + ++ +A ++++ + S T V+ ++E
Sbjct: 656 TDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMNRVRSSTIGSITNGPVIDEKE 715
Query: 898 ERETGIVSGSVLTRYKNAL-----GGPWVIMILFACYLSTEVLRISSS----------TW 942
ER + L+R K L + IL+ L I S T+
Sbjct: 716 ER----IGKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGGFIYPTY 771
Query: 943 LSFWTDQSTSKNYNPG-------FYIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHD 995
F+T NP F+ ++ +LA Q + L ++++ I+S + L +
Sbjct: 772 SVFFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRN 831
Query: 996 SMLNSILRAPMLFFHT--NPIGRVINRFSRDL 1025
+ ++L + FF + N G++ R + D+
Sbjct: 832 KLFRNVLSQHIGFFDSPQNASGKISTRLATDV 863
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 117/242 (48%), Gaps = 48/242 (19%)
Query: 641 VSIKNGNFSWDSKSPT--LSNINLDIPVGSLVAIVGGTGEGKTSLVS-------AMLGEL 691
V KN F++ + L ++ + G +A+VG +G GK+++V+ + GE+
Sbjct: 1077 VIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEI 1136
Query: 692 PPLKDASVV-------IRGTVAYVPQISWIFNATLRKNILFGSEFDP-----AKYWKTVD 739
D S + R +A V Q +F+ ++ +NI++G DP A+ +
Sbjct: 1137 --FIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYG--LDPSSVTMAQVEEAAR 1192
Query: 740 VSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFNS----------------- 782
++ + + + LP+ T +G+RG +SGGQKQR+++ARA+ +
Sbjct: 1193 LANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES 1252
Query: 783 --CIKEEL----RGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKL 836
++E L G+T I++ ++L+ + + D I +VS G I E+G+ +L + KL
Sbjct: 1253 EKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKGAYYKL 1312
Query: 837 ME 838
+
Sbjct: 1313 TQ 1314
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 86/359 (23%), Positives = 150/359 (41%), Gaps = 61/359 (16%)
Query: 968 AFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINRFSRDLGD 1027
A GQ+TVT Y + + RL + SILR + +F TN G + + +L
Sbjct: 151 AAGQITVT---CYLYVAEQMN--NRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLER 205
Query: 1028 IDRNVASFVNMFMNQLWQLLSTFVLIGIVS---TISLWAIMPXXXXXXXXXXXXQST--A 1082
+ + M L Q ++ F++ S T+ + A+ P ST
Sbjct: 206 VKEGTGDKIGMAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAI 265
Query: 1083 REVKRLDSITRSPVYAQFGEALN-GLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSN 1141
RE R YA+ G+ + +S+IR + +NG +R+ L S+
Sbjct: 266 RETLR---------YAKAGKVVEETISSIRT------VVSLNG------LRYELERYSTA 304
Query: 1142 RWLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFAST----MGLLLSYTLNITNLL--- 1194
+ L G+ + + +F MQ A N ++FA +G + +LN ++L
Sbjct: 305 VEEAKKAGVLKGLFLGI--SFGAMQ---ASNFISFALAFYIGVGWVHDGSLNFGDMLTTF 359
Query: 1195 SGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSS-----------GSI 1243
S V+ + + + +GT A G+ E P SS G I
Sbjct: 360 SSVMMGSMALGLAGPQLAVLGT---AQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDI 416
Query: 1244 KFEDVVLRY--RPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
E+V Y RP++P +L G++ V+ + V +VG +G GKS++++ L R ++ +G+
Sbjct: 417 TVENVHFTYPSRPDVP-ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGK 474
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 1241 GSIKFEDVVLRY--RPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELER 1298
G + F++V Y RPE+ +L GLSF+V P + + +VG +G GKS+++ L R +
Sbjct: 1075 GKVIFKNVRFAYPERPEIE-ILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLG 1133
Query: 1299 GE 1300
GE
Sbjct: 1134 GE 1135
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 107/226 (47%), Gaps = 39/226 (17%)
Query: 655 PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IR 702
P L ++L++ G +A+VG +G GK+++V + P+ + + +R
Sbjct: 1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLR 1106
Query: 703 GTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSA---LQHDLDLLPDRDLTEIG 759
+ V Q +F+ ++ +NI +G Y + V + + +D LPD+ T +G
Sbjct: 1107 AQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVG 1166
Query: 760 ERGVNISGGQKQRVSMARA-----------------------VFNSCIKEELRGKTRILV 796
++G +SGGQKQR+++ARA V + + G+T I++
Sbjct: 1167 DKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVI 1226
Query: 797 TNQLHFLPHVDRIILVSEGMIKEEGSFEE-LSKHGRLFQKLMENAG 841
++L + + D I+++ G +KE G+ ++ L++ G F + AG
Sbjct: 1227 AHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQAG 1272
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 107/233 (45%), Gaps = 40/233 (17%)
Query: 644 KNGNFSWDSKSPT--LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI 701
KN +FS+ S+ L +NL + G VA+VG +G GK++ V M PL D V I
Sbjct: 391 KNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL-DGMVSI 449
Query: 702 RGT-------------VAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLD 748
G + V Q +F T+ +NI +G E + A +D
Sbjct: 450 DGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFI 509
Query: 749 L-LPDRDLTEIGERGVNISGGQKQRVSMAR-----------------------AVFNSCI 784
+ LP + T +GERG +SGGQKQR+++AR AV + +
Sbjct: 510 MKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAAL 569
Query: 785 KEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLM 837
+ G+T I++ ++L + + D I G+I E+G+ +EL + ++ KL+
Sbjct: 570 DKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLV 622
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 71/356 (19%), Positives = 144/356 (40%), Gaps = 44/356 (12%)
Query: 960 YIAIYTILAFGQVTVTLLN-SYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVI 1018
Y YT + G + V + S+W + + R ++ ++I+ + +F + +G +
Sbjct: 110 YAYYYTGIGAGVLIVAYIQVSFWCLAAG-RQIHKIRQKFFHAIMNQEIGWFDVHDVGELN 168
Query: 1019 NRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVS----TISLWAIMPXXXXXXXX 1074
R + D+ I+ + + MF + F+ IG T+ + AI P
Sbjct: 169 TRLTDDVSKINEGIGDKIGMFFQAMATFFGGFI-IGFTRGWKLTLVILAISPVLGLSAGI 227
Query: 1075 XXXXQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFT 1134
S+ + K L + ++ A+ E L + T+ AF + + +++ R
Sbjct: 228 WAKILSSFTD-KELHAYAKAGAVAE--EVLAAIRTVIAFGGQKKELERYNNNLEEAKRLG 284
Query: 1135 LANTSSNRWLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLL 1194
+ + +T + ++G + + A++A +AF L++S +I +L
Sbjct: 285 I-----KKAITANI-SMGAAFLLIYASYA----------LAFWYGTSLVISKEYSIGQVL 328
Query: 1195 S-------GVLR--QAS----RAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSG 1241
+ G QAS N+ A V ID +S P G
Sbjct: 329 TVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNI--QG 386
Query: 1242 SIKFEDVVLRY--RPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVE 1295
+++F+++ Y R E+ +L GL+ V + V +VG +G GKS+ + + R+ +
Sbjct: 387 NLEFKNIHFSYPSRKEV-QILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD 441
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 1241 GSIKFEDVVLRY--RPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFR 1292
G+++F VV Y RP +P VL GLS V + + +VG +G GKS+++ L R
Sbjct: 1029 GNVQFSGVVFNYPTRPSIP-VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLER 1081
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 107/226 (47%), Gaps = 39/226 (17%)
Query: 655 PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IR 702
P L ++L++ G +A+VG +G GK+++V + P+ + + +R
Sbjct: 1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLR 1106
Query: 703 GTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSA---LQHDLDLLPDRDLTEIG 759
+ V Q +F+ ++ +NI +G Y + V + + +D LPD+ T +G
Sbjct: 1107 AQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVG 1166
Query: 760 ERGVNISGGQKQRVSMARA-----------------------VFNSCIKEELRGKTRILV 796
++G +SGGQKQR+++ARA V + + G+T I++
Sbjct: 1167 DKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVI 1226
Query: 797 TNQLHFLPHVDRIILVSEGMIKEEGSFEE-LSKHGRLFQKLMENAG 841
++L + + D I+++ G +KE G+ ++ L++ G F + AG
Sbjct: 1227 AHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQAG 1272
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 107/233 (45%), Gaps = 40/233 (17%)
Query: 644 KNGNFSWDSKSPT--LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI 701
KN +FS+ S+ L +NL + G VA+VG +G GK++ V M PL D V I
Sbjct: 391 KNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL-DGMVSI 449
Query: 702 RGT-------------VAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLD 748
G + V Q +F T+ +NI +G E + A +D
Sbjct: 450 DGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFI 509
Query: 749 L-LPDRDLTEIGERGVNISGGQKQRVSMAR-----------------------AVFNSCI 784
+ LP + T +GERG +SGGQKQR+++AR AV + +
Sbjct: 510 MKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAAL 569
Query: 785 KEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLM 837
+ G+T I++ ++L + + D I G+I E+G+ +EL + ++ KL+
Sbjct: 570 DKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLV 622
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 71/356 (19%), Positives = 144/356 (40%), Gaps = 44/356 (12%)
Query: 960 YIAIYTILAFGQVTVTLLN-SYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVI 1018
Y YT + G + V + S+W + + R ++ ++I+ + +F + +G +
Sbjct: 110 YAYYYTGIGAGVLIVAYIQVSFWCLAAG-RQIHKIRQKFFHAIMNQEIGWFDVHDVGELN 168
Query: 1019 NRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVS----TISLWAIMPXXXXXXXX 1074
R + D+ I+ + + MF + F+ IG T+ + AI P
Sbjct: 169 TRLTDDVSKINEGIGDKIGMFFQAMATFFGGFI-IGFTRGWKLTLVILAISPVLGLSAGI 227
Query: 1075 XXXXQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFT 1134
S+ + K L + ++ A+ E L + T+ AF + + +++ R
Sbjct: 228 WAKILSSFTD-KELHAYAKAGAVAE--EVLAAIRTVIAFGGQKKELERYNNNLEEAKRLG 284
Query: 1135 LANTSSNRWLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLL 1194
+ + +T + ++G + + A++A +AF L++S +I +L
Sbjct: 285 I-----KKAITANI-SMGAAFLLIYASYA----------LAFWYGTSLVISKEYSIGQVL 328
Query: 1195 S-------GVLR--QAS----RAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSG 1241
+ G QAS N+ A V ID +S P G
Sbjct: 329 TVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNI--QG 386
Query: 1242 SIKFEDVVLRY--RPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVE 1295
+++F+++ Y R E+ +L GL+ V + V +VG +G GKS+ + + R+ +
Sbjct: 387 NLEFKNIHFSYPSRKEV-QILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD 441
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 1241 GSIKFEDVVLRY--RPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFR 1292
G+++F VV Y RP +P VL GLS V + + +VG +G GKS+++ L R
Sbjct: 1029 GNVQFSGVVFNYPTRPSIP-VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLER 1081
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 121/241 (50%), Gaps = 44/241 (18%)
Query: 640 AVSIKNGNFSWDSKS--PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDA 697
A+ KN +F++ ++ P + +L IP GS+ A+VG +G GK++++S +L P
Sbjct: 341 ALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGT 400
Query: 698 ------------SVVIRGTVAYVPQISWIFNATLRKNILFGSEFDPA-----KYWKTVDV 740
V +R + V Q +F+ ++ +NI +G++ DP+ + + +V
Sbjct: 401 ISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGAD-DPSSVTAEEIQRVAEV 459
Query: 741 SALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF------------------NS 782
+ + P T +GE+GV +SGGQKQR+++ARA+ N
Sbjct: 460 ANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENE 519
Query: 783 CIKEE-----LRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEE-LSKHGRLFQKL 836
+ +E + G+T +++ ++L + + + + ++ +G I E G EE LSK +++KL
Sbjct: 520 YLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKL 579
Query: 837 M 837
M
Sbjct: 580 M 580
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 78/354 (22%), Positives = 146/354 (41%), Gaps = 72/354 (20%)
Query: 980 YWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMF 1039
Y + S R RL S+ +SILR + FF G +INR S D + R+V ++
Sbjct: 84 YLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDG 143
Query: 1040 MNQLWQL-------------LSTFVLIGIVSTISLWAIMPXXXXXXXXXXXXQSTAREVK 1086
+ Q L+TFVL +V +S+ A++ R ++
Sbjct: 144 LRAGAQASVGISMMFFVSPNLATFVL-SVVPPVSIIAVI---------------YGRYLR 187
Query: 1087 RL-----DSITRSPVYAQFGEALNGLSTIRAF-----------KAYDRMAKINGKSMDNN 1130
+L DS+ ++ A+ E + + T+RAF D + ++ K
Sbjct: 188 KLTKVTQDSLAQATQLAE--ERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFAR 245
Query: 1131 IRFTLANTSSNRWLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNI 1190
F A S + + + GG+++ G A V S+ L+ ++ + I
Sbjct: 246 AGFFGATGLSGNLIVLSVLYKGGLLM-----------GSAHMTVGELSSF-LMYAFWVGI 293
Query: 1191 TNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAP---GMVESNRPPPAWPSSGSIKFED 1247
+ + G+ S L A R+ ++ + P G++ + + G+++F++
Sbjct: 294 S--IGGLSSFYSELMKGLGAGGRLWELLEREPKLPFNEGVILNEK-----SFQGALEFKN 346
Query: 1248 VVLRY--RPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERG 1299
V Y RPE+ P+ S ++ +VG +G+GKS++L+ L R+ + G
Sbjct: 347 VHFAYPARPEV-PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASG 399
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 120/241 (49%), Gaps = 44/241 (18%)
Query: 640 AVSIKNGNFSWDSKS--PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDA 697
A+ KN +F++ ++ P + +L IP GS+ A+VG +G GK++++S +L P
Sbjct: 372 ALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGT 431
Query: 698 ------------SVVIRGTVAYVPQISWIFNATLRKNILFGSEFDPA-----KYWKTVDV 740
V +R + V Q +F+ ++ +NI +G++ DP+ + + +V
Sbjct: 432 ISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGAD-DPSSVTAEEIQRVAEV 490
Query: 741 SALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFNS------------------ 782
+ + P T +GE+GV +SGGQKQR+++ARA+ +
Sbjct: 491 ANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENE 550
Query: 783 -CIKEEL----RGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEE-LSKHGRLFQKL 836
++E L G+T +++ + L + + + + ++ +G I E G EE LSK +++KL
Sbjct: 551 YLVQEALDRLMDGRTVLVIAHHLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKL 610
Query: 837 M 837
M
Sbjct: 611 M 611
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 78/354 (22%), Positives = 146/354 (41%), Gaps = 72/354 (20%)
Query: 980 YWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMF 1039
Y + S R RL S+ +SILR + FF G +INR S D + R+V ++
Sbjct: 115 YLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDG 174
Query: 1040 MNQLWQL-------------LSTFVLIGIVSTISLWAIMPXXXXXXXXXXXXQSTAREVK 1086
+ Q L+TFVL +V +S+ A++ R ++
Sbjct: 175 LRAGAQASVGISMMFFVSPNLATFVL-SVVPPVSIIAVI---------------YGRYLR 218
Query: 1087 RL-----DSITRSPVYAQFGEALNGLSTIRAF-----------KAYDRMAKINGKSMDNN 1130
+L DS+ ++ A+ E + + T+RAF D + ++ K
Sbjct: 219 KLTKVTQDSLAQATQLAE--ERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFAR 276
Query: 1131 IRFTLANTSSNRWLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNI 1190
F A S + + + GG+++ G A V S+ L+ ++ + I
Sbjct: 277 AGFFGATGLSGNLIVLSVLYKGGLLM-----------GSAHMTVGELSSF-LMYAFWVGI 324
Query: 1191 TNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAP---GMVESNRPPPAWPSSGSIKFED 1247
+ + G+ S L A R+ ++ + P G++ + + G+++F++
Sbjct: 325 S--IGGLSSFYSELMKGLGAGGRLWELLEREPKLPFNEGVILNEK-----SFQGALEFKN 377
Query: 1248 VVLRY--RPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERG 1299
V Y RPE+ P+ S ++ +VG +G+GKS++L+ L R+ + G
Sbjct: 378 VHFAYPARPEV-PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASG 430
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 81.3 bits (199), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 108/219 (49%), Gaps = 37/219 (16%)
Query: 647 NFSWDSKSP--TLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASV----- 699
NFS+ ++ TL +IN IP G+ A+VG TG GK+++ + D +
Sbjct: 24 NFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNV 83
Query: 700 ------VIRGTVAYVPQISWIFNATLRKNILFGS-EFDPAKYWKTVDVSALQHDLDLLPD 752
IR + VPQ + +FN T++ NIL+G + + K + L ++ LP
Sbjct: 84 NKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPK 143
Query: 753 RDLTEIGERGVNISGGQKQRVSMARA-----------------------VFNSCIKEELR 789
+ T +G +G+ +SGG++QR+++AR +F +++ +
Sbjct: 144 KWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK 203
Query: 790 GKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSK 828
+T I++ ++L + + IIL+++G I E+G+ ++L K
Sbjct: 204 NRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLK 242
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 1242 SIKFEDVVLRYRPELPP-VLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELE 1297
+I+F DV Y + L ++F + +VG TG+GKS++ L+R + E
Sbjct: 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAE 73
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 80.1 bits (196), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 108/227 (47%), Gaps = 44/227 (19%)
Query: 641 VSIKNGNFSWDSKS-PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASV 699
V +K+ F++ K P LS+++ IP G VA+VG +G GK+++ + + + S+
Sbjct: 342 VDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIAN-LFTRFYDVDSGSI 400
Query: 700 VIRGT-------------VAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQ-H 745
+ G A V Q +FN T+ NI + +E + + + ++ +A Q H
Sbjct: 401 CLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTR--EQIEQAARQAH 458
Query: 746 DLDL---LPDRDLTEIGERGVNISGGQKQRVSMARAVF---------------------- 780
++ +P T IGE G ++SGGQ+QRV++ARA+
Sbjct: 459 AMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERA 518
Query: 781 -NSCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEEL 826
+ + E + KT +++ ++L + D I++V EG I E G +L
Sbjct: 519 IQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADL 565
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 71/337 (21%), Positives = 135/337 (40%), Gaps = 38/337 (11%)
Query: 978 NSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINRF-----------SRDLG 1026
+SY L S ++ + N + P+ FF G +++R SR L
Sbjct: 85 SSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALV 144
Query: 1027 DIDRNVASFVN----MFMNQLWQLLSTFVLIGIVSTISLWAIMPXXXXXXXXXXXXQSTA 1082
I R AS + MF N WQL + VLI +V+ + +AI
Sbjct: 145 SIVREGASIIGLLTLMFWNS-WQL--SLVLI-VVAPVVAFAI-----------SFVSKRF 189
Query: 1083 REVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNR 1142
R++ R V + + L G + ++ + K K ++ + T+ S+
Sbjct: 190 RKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQS 249
Query: 1143 WLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQAS 1202
++ + + ++ + A + + RAE T ++ S + L + S
Sbjct: 250 IADPVIQMIASLALFAVLFLASVDSIRAE---LTPGTFTVVFSAMFGLMRPLKALTSVTS 306
Query: 1203 RAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHG 1262
+ + A + + +DL +E N A +G + +DV Y+ + P L
Sbjct: 307 EFQRGMAACQTLFGLMDLETE-----RDNGKYEAERVNGEVDVKDVTFTYQGKEKPALSH 361
Query: 1263 LSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERG 1299
+SF++ + V +VGR+G+GKS++ N R +++ G
Sbjct: 362 VSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSG 398
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 110/234 (47%), Gaps = 40/234 (17%)
Query: 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAML------------ 688
+ +N +FS+ TL +++ + G +A+VG +G GK++++ +
Sbjct: 54 IEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRI 113
Query: 689 --GELPPLKDASVVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHD 746
++ + AS +R + VPQ + +FN T+ NI +G + +A HD
Sbjct: 114 DGQDISQVTQAS--LRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHD 171
Query: 747 LDL-LPDRDLTEIGERGVNISGGQKQRVSMARAVFNS-------------------CIKE 786
+ P+ T++GERG+ +SGG+KQRV++AR + + I+
Sbjct: 172 AIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQA 231
Query: 787 EL----RGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKL 836
L +T I+V ++L + + D+I+++ +G I E G E L G ++ +
Sbjct: 232 SLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRGGVYADM 285
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 1234 PPAWP---SSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNAL 1290
P A P G I+FE+V Y + L +SFTV P + + +VG +GAGKS++L L
Sbjct: 42 PGAGPLRFQKGRIEFENVHFSY-ADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLL 100
Query: 1291 FRIVELERG 1299
FR ++ G
Sbjct: 101 FRFYDISSG 109
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 111/233 (47%), Gaps = 46/233 (19%)
Query: 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLG----------- 689
+ KN FS+D K P L +I I G VA+VG TG GKT++V+ ++
Sbjct: 355 IEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILV 414
Query: 690 ---ELPPLKDASVVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWK-TVDVSALQH 745
++ +K +S +R ++ V Q + +F+ T+++N+ +G+ + K ++ H
Sbjct: 415 DGIDIRKIKRSS--LRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDH 472
Query: 746 DLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF-------------NSCIKEE----- 787
+ LP+ T + + G ++S GQ+Q +++ RA N K E
Sbjct: 473 FIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQA 532
Query: 788 -----LRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQK 835
+ GKT I++ ++L+ + + D II++ +G I E G KH L QK
Sbjct: 533 AMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMG------KHDELIQK 579
Score = 70.1 bits (170), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 72/323 (22%), Positives = 138/323 (42%), Gaps = 36/323 (11%)
Query: 992 RLHDSMLNSILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFV 1051
RL + + R P+ FF P G +I+R D+ +I+ + + + F + + L +
Sbjct: 111 RLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVI 170
Query: 1052 LIGIVSTISLWAIMPXXXXXXXXXXXXQSTAREVKRLDSITRSPVYAQFGEALNGLSTIR 1111
++ V+ I + S R+ + + E ++GL+ I+
Sbjct: 171 MMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIK 230
Query: 1112 AF-------KAYDR----MAKINGKS-MDNNIRFTLANTSSNRWLTIRLETLGGIMIWLI 1159
F + +DR + K+ K+ + + + L N +N + + GG WL
Sbjct: 231 LFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFAL-ISGFGG---WL- 285
Query: 1160 ATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYID 1219
A + T+ + Y+ T L+ + Q + + +L + ER+ +D
Sbjct: 286 ----------ALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILD 335
Query: 1220 LPSEA--PGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVG 1277
L E P VE G I+F++V Y + PVL ++F + P +KV +VG
Sbjct: 336 LEEEKDDPDAVELRE------VRGEIEFKNVWFSYDKK-KPVLKDITFHIKPGQKVALVG 388
Query: 1278 RTGAGKSSMLNALFRIVELERGE 1300
TG+GK++++N L R +++RG+
Sbjct: 389 PTGSGKTTIVNLLMRFYDVDRGQ 411
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 107/224 (47%), Gaps = 39/224 (17%)
Query: 641 VSIKNGNFSWDSKSPT-LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASV 699
++ +N F + SP L NINL I G ++ IVG +G GK++L + P ++ V
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP-ENGQV 62
Query: 700 VIRGTVAYVPQISWI---FNATLRKNILFGSEF-------DPAKYWKTVDVSAL---QHD 746
+I G + +W+ L+ N+L +P + V +A HD
Sbjct: 63 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 122
Query: 747 -LDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN-----------SCIKEE------- 787
+ L + T +GE+G +SGGQ+QR+++ARA+ N S + E
Sbjct: 123 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 182
Query: 788 -----LRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEEL 826
+G+T I++ ++L + + DRII++ +G I E+G +EL
Sbjct: 183 NMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKEL 226
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 1242 SIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
I F ++ RY+P+ P +L ++ ++ E +GIVGR+G+GKS++ + R E G+
Sbjct: 3 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 61
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 107/224 (47%), Gaps = 39/224 (17%)
Query: 641 VSIKNGNFSWDSKSPT-LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASV 699
++ +N F + SP L NINL I G ++ IVG +G GK++L + P ++ V
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP-ENGQV 66
Query: 700 VIRGTVAYVPQISWI---FNATLRKNILFGSEF-------DPAKYWKTVDVSAL---QHD 746
+I G + +W+ L+ N+L +P + V +A HD
Sbjct: 67 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 126
Query: 747 -LDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN-----------SCIKEE------- 787
+ L + T +GE+G +SGGQ+QR+++ARA+ N S + E
Sbjct: 127 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMR 186
Query: 788 -----LRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEEL 826
+G+T I++ ++L + + DRII++ +G I E+G +EL
Sbjct: 187 NMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKEL 230
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 1242 SIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
I F ++ RY+P+ P +L ++ ++ E +GIVGR+G+GKS++ + R E G+
Sbjct: 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 107/224 (47%), Gaps = 39/224 (17%)
Query: 641 VSIKNGNFSWDSKSPT-LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASV 699
++ +N F + SP L NINL I G ++ IVG +G GK++L + P ++ V
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP-ENGQV 60
Query: 700 VIRGTVAYVPQISWI---FNATLRKNILFGSEF-------DPAKYWKTVDVSAL---QHD 746
+I G + +W+ L+ N+L +P + V +A HD
Sbjct: 61 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 120
Query: 747 -LDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN-----------SCIKEE------- 787
+ L + T +GE+G +SGGQ+QR+++ARA+ N S + E
Sbjct: 121 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 180
Query: 788 -----LRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEEL 826
+G+T I++ ++L + + DRII++ +G I E+G +EL
Sbjct: 181 NMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKEL 224
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 1242 SIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
I F ++ RY+P+ P +L ++ ++ E +GIVGR+G+GKS++ + R E G+
Sbjct: 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 107/224 (47%), Gaps = 39/224 (17%)
Query: 641 VSIKNGNFSWDSKSPT-LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASV 699
++ +N F + SP L NINL I G ++ IVG +G GK++L + P ++ V
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP-ENGQV 66
Query: 700 VIRGTVAYVPQISWI---FNATLRKNILFGSEF-------DPAKYWKTVDVSAL---QHD 746
+I G + +W+ L+ N+L +P + V +A HD
Sbjct: 67 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 126
Query: 747 -LDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN-----------SCIKEE------- 787
+ L + T +GE+G +SGGQ+QR+++ARA+ N S + E
Sbjct: 127 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 186
Query: 788 -----LRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEEL 826
+G+T I++ ++L + + DRII++ +G I E+G +EL
Sbjct: 187 NMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKEL 230
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 1242 SIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
I F ++ RY+P+ P +L ++ ++ E +GIVGR+G+GKS++ + R E G+
Sbjct: 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 106/224 (47%), Gaps = 39/224 (17%)
Query: 641 VSIKNGNFSWDSKSPT-LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASV 699
++ +N F + SP L NINL I G ++ IVG G GK++L + P ++ V
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIP-ENGQV 62
Query: 700 VIRGTVAYVPQISWI---FNATLRKNILFGSEF-------DPAKYWKTVDVSAL---QHD 746
+I G + +W+ L+ N+L +P + V +A HD
Sbjct: 63 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 122
Query: 747 -LDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN-----------SCIKEE------- 787
+ L + T +GE+G +SGGQ+QR+++ARA+ N S + E
Sbjct: 123 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 182
Query: 788 -----LRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEEL 826
+G+T I++ ++L + + DRII++ +G I E+G +EL
Sbjct: 183 NMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKEL 226
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%)
Query: 1242 SIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
I F ++ RY+P+ P +L ++ ++ E +GIVGR G+GKS++ + R E G+
Sbjct: 3 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQ 61
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 106/224 (47%), Gaps = 39/224 (17%)
Query: 641 VSIKNGNFSWDSKSPT-LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASV 699
++ +N F + SP L NINL I G ++ IVG +G GK++L + P ++ V
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP-ENGQV 60
Query: 700 VIRGTVAYVPQISWI---FNATLRKNILFGSEF-------DPAKYWKTVDVSAL---QHD 746
+I G + +W+ L+ N+L +P + V +A HD
Sbjct: 61 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 120
Query: 747 -LDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN-----------SCIKEE------- 787
+ L + T +GE+G +SGGQ+QR+++ARA+ N S + E
Sbjct: 121 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 180
Query: 788 -----LRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEEL 826
+G+T I++ +L + + DRII++ +G I E+G +EL
Sbjct: 181 NMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKEL 224
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 1242 SIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
I F ++ RY+P+ P +L ++ ++ E +GIVGR+G+GKS++ + R E G+
Sbjct: 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 106/224 (47%), Gaps = 39/224 (17%)
Query: 641 VSIKNGNFSWDSKSPT-LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASV 699
++ +N F + SP L NINL I G ++ IVG +G GK++L + P ++ V
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP-ENGQV 66
Query: 700 VIRGTVAYVPQISWI---FNATLRKNILFGSEF-------DPAKYWKTVDVSAL---QHD 746
+I G + +W+ L+ N+L +P + V +A HD
Sbjct: 67 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 126
Query: 747 -LDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN-----------SCIKEE------- 787
+ L + T +GE+G +SGGQ+QR+++ARA+ N S + E
Sbjct: 127 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 186
Query: 788 -----LRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEEL 826
+G+T I++ +L + + DRII++ +G I E+G +EL
Sbjct: 187 NMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKEL 230
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 1242 SIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
I F ++ RY+P+ P +L ++ ++ E +GIVGR+G+GKS++ + R E G+
Sbjct: 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 63.2 bits (152), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 97/222 (43%), Gaps = 41/222 (18%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG------------- 703
L + + G + A+VG G GK++ V+A+L L V++ G
Sbjct: 35 LQGLTFTLYPGKVTALVGPNGSGKST-VAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93
Query: 704 TVAYVPQISWIFNATLRKNILFGSEFDPA-KYWKTVDVSALQHD-LDLLPDRDLTEIGER 761
VA V Q +F + R+NI +G P + V + + HD + P TE+GE
Sbjct: 94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGET 153
Query: 762 GVNISGGQKQRVSMARAVFNSC-------------IKEELR------------GKTRILV 796
G +SGGQ+Q V++ARA+ +LR +T +L+
Sbjct: 154 GNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRTVLLI 213
Query: 797 TNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLME 838
T+QL I+ + EG + E+G+ +L + G ++ ++E
Sbjct: 214 THQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMVE 255
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 1241 GSIKFEDVVLRYRPELP--PVLHGLSFTVSPSEKVGIVGRTGAGKSSM 1286
G +KF+DV Y P P VL GL+FT+ P + +VG G+GKS++
Sbjct: 15 GLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTV 61
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 96/222 (43%), Gaps = 41/222 (18%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG------------- 703
L + + G + A+VG G GK++ V+A+L L V++ G
Sbjct: 35 LQGLTFTLYPGKVTALVGPNGSGKST-VAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93
Query: 704 TVAYVPQISWIFNATLRKNILFGSEFDPA-KYWKTVDVSALQHD-LDLLPDRDLTEIGER 761
VA V Q +F + R+NI +G P + V + + HD + P TE+GE
Sbjct: 94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGET 153
Query: 762 GVNISGGQKQRVSMARAVFNSC-------------IKEELR------------GKTRILV 796
G +SGGQ+Q V++ARA+ +LR +T +L+
Sbjct: 154 GNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLI 213
Query: 797 TNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLME 838
T QL I+ + EG + E+G+ +L + G ++ ++E
Sbjct: 214 TQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMVE 255
Score = 38.9 bits (89), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 1241 GSIKFEDVVLRYRPELP--PVLHGLSFTVSPSEKVGIVGRTGAGKSSM 1286
G +KF+DV Y P P VL GL+FT+ P + +VG G+GKS++
Sbjct: 15 GLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTV 61
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 42/61 (68%)
Query: 1237 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVEL 1296
WPS G + +D+ +Y +L +SF++SP ++VG++GRTG+GKS++L+A R++
Sbjct: 14 WPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT 73
Query: 1297 E 1297
E
Sbjct: 74 E 74
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 88/204 (43%), Gaps = 34/204 (16%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAML------GEL--PPLKDASVVI---RGTV 705
L NI+ I G V ++G TG GK++L+SA L GE+ + S+ + R
Sbjct: 37 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRKAF 96
Query: 706 AYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNI 765
+PQ +IF+ T RKN+ + + WK D L+ ++ P + + + G +
Sbjct: 97 GVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVL 156
Query: 766 SGGQKQRVSMARAVFNSC-----------------------IKEELRGKTRILVTNQLHF 802
S G KQ + +AR+V + +K+ T IL ++
Sbjct: 157 SHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEA 216
Query: 803 LPHVDRIILVSEGMIKEEGSFEEL 826
+ D+ +++ E +++ S EL
Sbjct: 217 MLECDQFLVIEENKVRQYDSILEL 240
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 95/222 (42%), Gaps = 41/222 (18%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG------------- 703
L + + G + A+VG G GK++ V+A+L L V++ G
Sbjct: 35 LQGLTFTLYPGKVTALVGPNGSGKST-VAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93
Query: 704 TVAYVPQISWIFNATLRKNILFGSEFDPA-KYWKTVDVSALQHD-LDLLPDRDLTEIGER 761
VA V Q +F + R+NI +G P + V + + HD + P TE+GE
Sbjct: 94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGET 153
Query: 762 GVNISGGQKQRVSMARAVFNSC-------------IKEELR------------GKTRILV 796
G ++ GQ+Q V++ARA+ +LR +T +L+
Sbjct: 154 GNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLI 213
Query: 797 TNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLME 838
T QL I+ + EG + E+G+ +L + G ++ ++E
Sbjct: 214 TQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMVE 255
Score = 38.9 bits (89), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 1241 GSIKFEDVVLRYRPELP--PVLHGLSFTVSPSEKVGIVGRTGAGKSSM 1286
G +KF+DV Y P P VL GL+FT+ P + +VG G+GKS++
Sbjct: 15 GLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTV 61
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 57.0 bits (136), Expect = 6e-08, Method: Composition-based stats.
Identities = 40/148 (27%), Positives = 80/148 (54%), Gaps = 8/148 (5%)
Query: 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASV 699
A+S++N F + +++ +N D+ G ++A++G G GK++L+ +LG P++ +
Sbjct: 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQ-GKI 62
Query: 700 VIRGTVAYVPQ-ISWIFNATLRKNILFG--SEFDPAKYWKTVDVSALQHDLDLLPDRDLT 756
+ ++ +VPQ S F ++ +L G + + K+ D LD L +LT
Sbjct: 63 EVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYL---NLT 119
Query: 757 EIGERG-VNISGGQKQRVSMARAVFNSC 783
+ +R ++SGGQ+Q + +ARA+ + C
Sbjct: 120 HLAKREFTSLSGGQRQLILIARAIASEC 147
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 56.6 bits (135), Expect = 8e-08, Method: Composition-based stats.
Identities = 52/210 (24%), Positives = 87/210 (41%), Gaps = 41/210 (19%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGT------------ 704
L + + G + A+VG G GK++ V+A+L L +++ G
Sbjct: 33 LQGLTFTLRPGEVTALVGPNGSGKST-VAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHR 91
Query: 705 -VAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDV--SALQHDLDLLPDRDLTEIGER 761
VA V Q +F +L++NI +G P T S + LP TE+ E
Sbjct: 92 QVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEA 151
Query: 762 GVNISGGQKQRVSMARAVFNS-CI------------------------KEELRGKTRILV 796
G +SGGQ+Q V++ARA+ C+ E ++ +L+
Sbjct: 152 GSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLI 211
Query: 797 TNQLHFLPHVDRIILVSEGMIKEEGSFEEL 826
T L + D I+ + G I+E G+ ++L
Sbjct: 212 TQHLSLVEQADHILFLEGGAIREGGTHQQL 241
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 1241 GSIKFEDVVLRY--RPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSM 1286
G ++F+DV Y RP++ VL GL+FT+ P E +VG G+GKS++
Sbjct: 13 GLVQFQDVSFAYPNRPDVL-VLQGLTFTLRPGEVTALVGPNGSGKSTV 59
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 92/208 (44%), Gaps = 44/208 (21%)
Query: 656 TLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP----LKDAS----VVIRGTVAY 707
L ++N + G + +VG G GKT+L+ + G L D S ++R V Y
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAAGEIFLDGSPADPFLLRKNVGY 85
Query: 708 VPQ--ISWIFNATLRKNILFGSE---FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERG 762
V Q S I AT+ +++ F E D ++ K + + L+L+ L
Sbjct: 86 VFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRI-----KKVLELVGLSGLA--AADP 138
Query: 763 VNISGGQKQRVSMA------------------------RAVFNSCIKEELRGKTRILVTN 798
+N+SGGQKQR+++A R +F + GK ILVT+
Sbjct: 139 LNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTH 198
Query: 799 QLHFLPHVDRIILVSEGMIKEEGSFEEL 826
+L +L +D I+ +S G I GS+EE
Sbjct: 199 ELEYLDDMDFILHISNGTIDFCGSWEEF 226
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 55.1 bits (131), Expect = 3e-07, Method: Composition-based stats.
Identities = 66/231 (28%), Positives = 105/231 (45%), Gaps = 69/231 (29%)
Query: 644 KNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLG-------------- 689
K GNF+ L+NINL I G +A++G +G GK++L+ + G
Sbjct: 12 KFGNFT------ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEK 65
Query: 690 ---ELPPLKDASV-VIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYW----KTVDVS 741
ELPP KD +V ++ A P + T+ KNI F E A K +V+
Sbjct: 66 DVTELPP-KDRNVGLVFQNWALYPHM------TVYKNIAFPLELRKAPREEIDKKVREVA 118
Query: 742 ALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAV---------------FNSCIKE 786
+ H +D L +R + +SGGQ+QRV++ARA+ ++ ++
Sbjct: 119 KMLH-IDKLLNRYPWQ-------LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRL 170
Query: 787 ELR----------GKTRILVT-NQLHFLPHVDRIILVSEGMIKEEGSFEEL 826
E+R G T + VT +Q L DRI ++ EG I + G+ +E+
Sbjct: 171 EVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEV 221
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 57/226 (25%), Positives = 105/226 (46%), Gaps = 46/226 (20%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAM-LGELPPLKDASVVIRGTVAYVPQISWIF 715
L+N++L +P G + ++G +G GK++L+ + L E P + SV++ G S +
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TEGSVLVDGQELTTLSESELT 101
Query: 716 NATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLP----DRDLTE------IGERG--- 762
A + +F F+ AL +LD P R +TE +G++
Sbjct: 102 KARRQIGXIF-QHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSY 160
Query: 763 -VNISGGQKQRVSMARAVFNS-------------------CIKEELR------GKTRILV 796
N+SGGQKQRV++ARA+ ++ I E L+ G T +L+
Sbjct: 161 PSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLI 220
Query: 797 TNQLHFLPHV-DRIILVSEGMIKEEGSFEELSKHGR--LFQKLMEN 839
T++ + + D + ++S G + E+ + E+ H + L QK +++
Sbjct: 221 THEXDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQS 266
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 108/226 (47%), Gaps = 46/226 (20%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAM-LGELPPLKDASVVIRGTVAYVPQISWIF 715
L+N++L +P G + ++G +G GK++L+ + L E P + SV++ G S +
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TEGSVLVDGQELTTLSESELT 78
Query: 716 NATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLP----DRDLTE------IGERG--- 762
A + ++F F+ AL +LD P R +TE +G++
Sbjct: 79 KARRQIGMIF-QHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSY 137
Query: 763 -VNISGGQKQRVSMARAVFNS-----C--------------IKEELR------GKTRILV 796
N+SGGQKQRV++ARA+ ++ C I E L+ G T +L+
Sbjct: 138 PSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLI 197
Query: 797 TNQLHFLPHV-DRIILVSEGMIKEEGSFEELSKHGR--LFQKLMEN 839
T+++ + + D + ++S G + E+ + E+ H + L QK +++
Sbjct: 198 THEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQS 243
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 108/226 (47%), Gaps = 46/226 (20%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAM-LGELPPLKDASVVIRGTVAYVPQISWIF 715
L+N++L +P G + ++G +G GK++L+ + L E P + SV++ G S +
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TEGSVLVDGQELTTLSESELT 101
Query: 716 NATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLP----DRDLTE------IGERG--- 762
A + ++F F+ AL +LD P R +TE +G++
Sbjct: 102 KARRQIGMIF-QHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSY 160
Query: 763 -VNISGGQKQRVSMARAVFNS-----C--------------IKEELR------GKTRILV 796
N+SGGQKQRV++ARA+ ++ C I E L+ G T +L+
Sbjct: 161 PSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLI 220
Query: 797 TNQLHFLPHV-DRIILVSEGMIKEEGSFEELSKHGR--LFQKLMEN 839
T+++ + + D + ++S G + E+ + E+ H + L QK +++
Sbjct: 221 THEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQS 266
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 47.0 bits (110), Expect = 6e-05, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 68/141 (48%), Gaps = 26/141 (18%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKD-------------ASVVIRG 703
+ I+L +P G +V ++G G GKT+ +SA+ G + K A V+ R
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRX 81
Query: 704 TVAYVPQISWIF-NATLRKNILFGSEFDPAKYWKTVDVSALQHDLD----LLPDRDLTEI 758
+A VP+ IF T+ +N+ G+ + D ++ DL+ L P R +
Sbjct: 82 GIALVPEGRRIFPELTVYENLXXGA-------YNRKDKEGIKRDLEWIFSLFP-RLKERL 133
Query: 759 GERGVNISGGQKQRVSMARAV 779
+ G +SGG++Q +++ RA+
Sbjct: 134 KQLGGTLSGGEQQXLAIGRAL 154
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 73/154 (47%), Gaps = 28/154 (18%)
Query: 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP-----LK 695
+ I++ + W K+ +L N++L + G I+G TG GKT + + G P L
Sbjct: 2 IEIESLSRKW--KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILL 59
Query: 696 DASVVI-----RGTVAYVPQISWIF-NATLRKNILFGSEF----DPAKYWKTVDVSALQH 745
D V + +A+V Q +F + ++KN+ FG DP + T ++H
Sbjct: 60 DGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEH 119
Query: 746 DLDLLPDRDLTEIGERGVNISGGQKQRVSMARAV 779
LD P + +SGG++QRV++ARA+
Sbjct: 120 LLDRNP-----------LTLSGGEQQRVALARAL 142
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 25/93 (26%)
Query: 759 GERGVNISGGQKQRVSMARAVF-----------NSCIKEEL-------------RGKTRI 794
G+ V++SGGQ+QRVS+ARA+ S + EL GKT +
Sbjct: 148 GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMV 207
Query: 795 LVTNQLHFLPHV-DRIILVSEGMIKEEGSFEEL 826
+VT+++ F HV +I + +G I+EEG E++
Sbjct: 208 VVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQV 240
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 45.1 bits (105), Expect = 3e-04, Method: Composition-based stats.
Identities = 55/224 (24%), Positives = 98/224 (43%), Gaps = 58/224 (25%)
Query: 656 TLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLG-ELPPLKDASVVIRGTVAYVPQ---I 711
++ ++ I G +V ++G +G GKT+++ + G E P D + + PQ +
Sbjct: 30 SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNV 89
Query: 712 SWIF-------NATLRKNILFG--------SEFDPAKYWKTVDVSALQHDLDLLPDRDLT 756
+F + T+ N+ FG E D A+ + + L+ + P
Sbjct: 90 GLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMD-ARVRELLRFMRLESYANRFPHE--- 145
Query: 757 EIGERGVNISGGQKQRVSMARAV---------------FNSCIKEELR----------GK 791
+SGGQ+QRV++ARA+ ++ I+ ELR G
Sbjct: 146 --------LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGV 197
Query: 792 TRILVT-NQLHFLPHVDRIILVSEGMIKEEGSFEEL-SKHGRLF 833
T + VT +Q L DR++++ EG +++ G+ EE+ K G LF
Sbjct: 198 TSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLF 241
Score = 30.8 bits (68), Expect = 5.4, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 1241 GSIKFEDV-VLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELER 1298
GS+ E V V + P + G+SF + E VG++G +G+GK+++L I LER
Sbjct: 11 GSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRL---IAGLER 66
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 44.3 bits (103), Expect = 4e-04, Method: Composition-based stats.
Identities = 55/219 (25%), Positives = 89/219 (40%), Gaps = 61/219 (27%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGT------------ 704
L IN+ I G +V ++G +G GK++ + L L + ++I G
Sbjct: 19 LKGINVHIREGEVVVVIGPSGSGKSTFLRC-LNLLEDFDEGEIIIDGINLKAKDTNLNKV 77
Query: 705 ---VAYV-------PQISWIFNATL--RKNILFGSEFDPAKYWKTVDVSALQHDLDLLPD 752
V V P ++ + N TL K + E AK + +D L+ PD
Sbjct: 78 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPD 137
Query: 753 RDLTEIGERGVNISGGQKQRVSMARAVF-----------NSCIKEEL------------- 788
++SGGQ QRV++ARA+ S + E+
Sbjct: 138 -----------SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN 186
Query: 789 RGKTRILVTNQLHFLPHV-DRIILVSEGMIKEEGSFEEL 826
G T ++VT+++ F V DR++ + G I EEG E+L
Sbjct: 187 EGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDL 225
Score = 31.2 bits (69), Expect = 4.3, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 1259 VLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302
VL G++ + E V ++G +G+GKS+ L L + + + GE I
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEII 61
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 44.3 bits (103), Expect = 4e-04, Method: Composition-based stats.
Identities = 55/219 (25%), Positives = 89/219 (40%), Gaps = 61/219 (27%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGT------------ 704
L IN+ I G +V ++G +G GK++ + L L + ++I G
Sbjct: 40 LKGINVHIREGEVVVVIGPSGSGKSTFLRC-LNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 705 ---VAYV-------PQISWIFNATL--RKNILFGSEFDPAKYWKTVDVSALQHDLDLLPD 752
V V P ++ + N TL K + E AK + +D L+ PD
Sbjct: 99 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPD 158
Query: 753 RDLTEIGERGVNISGGQKQRVSMARAVF-----------NSCIKEEL------------- 788
++SGGQ QRV++ARA+ S + E+
Sbjct: 159 -----------SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN 207
Query: 789 RGKTRILVTNQLHFLPHV-DRIILVSEGMIKEEGSFEEL 826
G T ++VT+++ F V DR++ + G I EEG E+L
Sbjct: 208 EGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDL 246
Score = 31.2 bits (69), Expect = 4.3, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 1259 VLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302
VL G++ + E V ++G +G+GKS+ L L + + + GE I
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEII 82
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 98/237 (41%), Gaps = 68/237 (28%)
Query: 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLG---------- 689
+V ++N +W + +INLDI G V VG +G GK++L+ + G
Sbjct: 3 SVQLQNVTKAW-GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 61
Query: 690 -------ELPPLKDASVVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYW------- 735
+ PP + ++ + A P +S + +N+ FG + AK
Sbjct: 62 IGEKRMNDTPPAERGVGMVFQSYALYPHLS------VAENMSFGLKLAGAKKEVINQRVN 115
Query: 736 KTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAV---------------F 780
+ +V L H LD P +SGGQ+QRV++ R +
Sbjct: 116 QVAEVLQLAHLLDRKPK-----------ALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNL 164
Query: 781 NSCIKEELR----------GKTRILVT-NQLHFLPHVDRIILVSEGMIKEEGSFEEL 826
++ ++ ++R G+T I VT +Q+ + D+I+++ G + + G EL
Sbjct: 165 DAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 98/237 (41%), Gaps = 68/237 (28%)
Query: 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLG---------- 689
+V ++N +W + +INLDI G V VG +G GK++L+ + G
Sbjct: 3 SVQLQNVTKAW-GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 61
Query: 690 -------ELPPLKDASVVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYW------- 735
+ PP + ++ + A P +S + +N+ FG + AK
Sbjct: 62 IGEKRMNDTPPAERGVGMVFQSYALYPHLS------VAENMSFGLKLAGAKKEVINQRVN 115
Query: 736 KTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAV---------------F 780
+ +V L H LD P +SGGQ+QRV++ R +
Sbjct: 116 QVAEVLQLAHLLDRKPK-----------ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNL 164
Query: 781 NSCIKEELR----------GKTRILVT-NQLHFLPHVDRIILVSEGMIKEEGSFEEL 826
++ ++ ++R G+T I VT +Q+ + D+I+++ G + + G EL
Sbjct: 165 DAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 98/237 (41%), Gaps = 68/237 (28%)
Query: 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLG---------- 689
+V ++N +W + +INLDI G V VG +G GK++L+ + G
Sbjct: 3 SVQLQNVTKAW-GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 61
Query: 690 -------ELPPLKDASVVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYW------- 735
+ PP + ++ + A P +S + +N+ FG + AK
Sbjct: 62 IGEKRMNDTPPAERGVGMVFQSYALYPHLS------VAENMSFGLKLAGAKKEVINQRVN 115
Query: 736 KTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAV---------------F 780
+ +V L H LD P +SGGQ+QRV++ R +
Sbjct: 116 QVAEVLQLAHLLDRKPK-----------ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNL 164
Query: 781 NSCIKEELR----------GKTRILVT-NQLHFLPHVDRIILVSEGMIKEEGSFEEL 826
++ ++ ++R G+T I VT +Q+ + D+I+++ G + + G EL
Sbjct: 165 DAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 52/212 (24%), Positives = 93/212 (43%), Gaps = 54/212 (25%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI--------------- 701
L N+NL+I G V+I+G +G GK+++++ ++G L + V I
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLN-IIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79
Query: 702 --RGTVAYV-PQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEI 758
R + +V Q + I T +N+ P + +S + L + E+
Sbjct: 80 IRRDKIGFVFQQFNLIPLLTALENVEL-----PLIFKYRGAMSGEERRKRALECLKMAEL 134
Query: 759 GERGVN-----ISGGQKQRVSMARAVFNS-----------------------CIKE--EL 788
ER N +SGGQ+QRV++ARA+ N+ +K+ E
Sbjct: 135 EERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEE 194
Query: 789 RGKTRILVTNQLHFLPHVDRIILVSEGMIKEE 820
GKT ++VT+ ++ +RII + +G ++ E
Sbjct: 195 DGKTVVVVTHDINVARFGERIIYLKDGEVERE 226
Score = 31.6 bits (70), Expect = 2.7, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 1243 IKFEDVVLRYR--PELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNAL 1290
IK ++V Y+ E+ L ++ + E V I+G +G+GKS+MLN +
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNII 51
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 13/133 (9%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLK-DASVVIRGTVAYVPQISWIF 715
+++++L I G +VAI+G G GK++L+ + G L P + ++ + ++ P+
Sbjct: 27 INDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALART 86
Query: 716 NATLRKNILFGSEFD--------PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNI-S 766
A +R+ F A Y + D ALQ ++ D + +R + S
Sbjct: 87 RAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQ---VMAQTDCLALAQRDYRVLS 143
Query: 767 GGQKQRVSMARAV 779
GG++QRV +AR +
Sbjct: 144 GGEQQRVQLARVL 156
Score = 31.6 bits (70), Expect = 3.0, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 1250 LRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
L Y + +++ +S ++ E V I+G GAGKS++L L + GE
Sbjct: 17 LHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGE 67
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 93/213 (43%), Gaps = 54/213 (25%)
Query: 656 TLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-------------- 701
L N+NL+I G V+I+G +G GK+++++ ++G L + V I
Sbjct: 20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLN-IIGCLDKPTEGEVYIDNIKTNDLDDDELT 78
Query: 702 ---RGTVAYV-PQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTE 757
R + +V Q + I T +N+ P + +S + L + E
Sbjct: 79 KIRRDKIGFVFQQFNLIPLLTALENVEL-----PLIFKYRGAMSGEERRKRALECLKMAE 133
Query: 758 IGERGVN-----ISGGQKQRVSMARAVFNS-----------------------CIKE--E 787
+ ER N +SGGQ+QRV++ARA+ N+ +K+ E
Sbjct: 134 LEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNE 193
Query: 788 LRGKTRILVTNQLHFLPHVDRIILVSEGMIKEE 820
GKT ++VT+ ++ +RII + +G ++ E
Sbjct: 194 EDGKTVVVVTHDINVARFGERIIYLKDGEVERE 226
Score = 30.4 bits (67), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 1243 IKFEDVVLRYR--PELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNAL 1290
+K ++V Y+ E+ L ++ + E V I+G +G+GKS+MLN +
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNII 51
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 641 VSIKNGNFSWDSKS-PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP 693
V + N F + S P +++IN + S +A++G G GK++L++ + GEL P
Sbjct: 666 VKVTNXEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP 719
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNAL 1290
+K + +Y P + ++F S S ++ ++G GAGKS+++N L
Sbjct: 666 VKVTNXEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVL 713
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 641 VSIKNGNFSWDSKS-PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP 693
V + N F + S P +++IN + S +A++G G GK++L++ + GEL P
Sbjct: 672 VKVTNXEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP 725
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNAL 1290
+K + +Y P + ++F S S ++ ++G GAGKS+++N L
Sbjct: 672 VKVTNXEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVL 719
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 641 VSIKNGNFSWDSKS-PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP 693
V + N F + S P +++IN + S +A++G G GK++L++ + GEL P
Sbjct: 672 VKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP 725
Score = 33.1 bits (74), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNAL 1290
+K ++ +Y P + ++F S S ++ ++G GAGKS+++N L
Sbjct: 672 VKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVL 719
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 39.3 bits (90), Expect = 0.014, Method: Composition-based stats.
Identities = 49/242 (20%), Positives = 107/242 (44%), Gaps = 54/242 (22%)
Query: 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP------- 693
+ ++ N+++ + L IN++I G + AI+GG G GK++L G L P
Sbjct: 8 LKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILF 67
Query: 694 -------LKDASVVIRGTVAYVPQ--ISWIFNATLRKNILFGS---EFDPAKYWKTVDVS 741
+ + +R ++ V Q + +F+A++ +++ FG+ + + K VD +
Sbjct: 68 DNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNA 127
Query: 742 ALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFNSC------------------ 783
+ ++ L D+ +S GQK+RV++A +
Sbjct: 128 LKRTGIEHLKDKPTH-------CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVS 180
Query: 784 --------IKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKHGRLFQ 834
+++EL G T I+ T+ + +P + D + ++ EG + +G+ +E+ + +
Sbjct: 181 EIMKLLVEMQKEL-GITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEVIR 239
Query: 835 KL 836
K+
Sbjct: 240 KV 241
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 39.3 bits (90), Expect = 0.014, Method: Composition-based stats.
Identities = 53/226 (23%), Positives = 98/226 (43%), Gaps = 55/226 (24%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWIFN 716
L N++L I G + + G TG GK++L+ + G + P G V Y + +
Sbjct: 25 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS-------GDVLYDGERKKGYE 77
Query: 717 ATLRKNILFGSEFDPAKYW--KTVDVSALQHDLDLLPDRDLTEIGERGVN---------- 764
+R+NI ++ +++ + D A + PDRD + ++ +
Sbjct: 78 --IRRNIGIAFQYPEDQFFAERVFDEVAFAVK-NFYPDRDPVPLVKKAMEFVGLDFDSFK 134
Query: 765 ------ISGGQKQRVSMARAVFNS---CIKEE-------------LR--------GKTRI 794
+SGG+K+RV++A + + I +E LR GKT I
Sbjct: 135 DRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVI 194
Query: 795 LVTNQLH-FLPHVDRIILVSEGMIKEEGS-FEELSKHG-RLFQKLM 837
L+++ + + HVDR++++ +G +G+ E L K+ R F M
Sbjct: 195 LISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFTSKM 240
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 39.3 bits (90), Expect = 0.014, Method: Composition-based stats.
Identities = 53/226 (23%), Positives = 98/226 (43%), Gaps = 55/226 (24%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWIFN 716
L N++L I G + + G TG GK++L+ + G + P G V Y + +
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS-------GDVLYDGERKKGYE 75
Query: 717 ATLRKNILFGSEFDPAKYW--KTVDVSALQHDLDLLPDRDLTEIGERGVN---------- 764
+R+NI ++ +++ + D A + PDRD + ++ +
Sbjct: 76 --IRRNIGIAFQYPEDQFFAERVFDEVAFAVK-NFYPDRDPVPLVKKAMEFVGLDFDSFK 132
Query: 765 ------ISGGQKQRVSMARAVFNS---CIKEE-------------LR--------GKTRI 794
+SGG+K+RV++A + + I +E LR GKT I
Sbjct: 133 DRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVI 192
Query: 795 LVTNQLH-FLPHVDRIILVSEGMIKEEGS-FEELSKHG-RLFQKLM 837
L+++ + + HVDR++++ +G +G+ E L K+ R F M
Sbjct: 193 LISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFTSKM 238
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 38.9 bits (89), Expect = 0.022, Method: Composition-based stats.
Identities = 39/148 (26%), Positives = 71/148 (47%), Gaps = 27/148 (18%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGT-VAYVPQISWIF 715
L I+L + G V+I+G +G GK++L+ +LG L + V + G V Y +
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLY-ILGLLDAPTEGKVFLEGKEVDYTNEKE--- 75
Query: 716 NATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLL-----PDRDLTEIGE---------- 760
+L +N G F ++ +++AL++ + + P ++ E GE
Sbjct: 76 -LSLLRNRKLGFVFQ--FHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGD 132
Query: 761 ----RGVNISGGQKQRVSMARAVFNSCI 784
+ +SGG++QRV++ARA+ N I
Sbjct: 133 KLSRKPYELSGGEQQRVAIARALANEPI 160
Score = 32.3 bits (72), Expect = 1.6, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 1259 VLHGLSFTVSPSEKVGIVGRTGAGKSSMLNAL 1290
+L G+S +V E V I+G +G+GKS++L L
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYIL 50
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 38.5 bits (88), Expect = 0.026, Method: Composition-based stats.
Identities = 52/212 (24%), Positives = 89/212 (41%), Gaps = 54/212 (25%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI--------------- 701
L N+NL+I G V+I G +G GK++ ++ ++G L + V I
Sbjct: 21 LKNVNLNIKEGEFVSIXGPSGSGKSTXLN-IIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79
Query: 702 --RGTVAYV-PQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEI 758
R + +V Q + I T +N+ P + S + L E+
Sbjct: 80 IRRDKIGFVFQQFNLIPLLTALENVEL-----PLIFKYRGAXSGEERRKRALECLKXAEL 134
Query: 759 GERGVN-----ISGGQKQRVSMARAVFNS-----------------------CIKE--EL 788
ER N +SGGQ+QRV++ARA+ N+ +K+ E
Sbjct: 135 EERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEE 194
Query: 789 RGKTRILVTNQLHFLPHVDRIILVSEGMIKEE 820
GKT ++VT+ ++ +RII + +G ++ E
Sbjct: 195 DGKTVVVVTHDINVARFGERIIYLKDGEVERE 226
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 37.7 bits (86), Expect = 0.045, Method: Composition-based stats.
Identities = 52/211 (24%), Positives = 92/211 (43%), Gaps = 49/211 (23%)
Query: 660 INLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVA------YVP---- 709
++L++ G + ++G +G GKT+ + + G P + + VA +VP
Sbjct: 22 MSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDR 81
Query: 710 QISWIFNA-------TLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERG 762
I+ +F + T+ NI F P K K Q ++ LTE+ R
Sbjct: 82 DIAMVFQSYALYPHMTVYDNIAF-----PLKLRKVPRQEIDQRVREVAELLGLTELLNRK 136
Query: 763 V-NISGGQKQRVSMARAVFN-----------SCIKEELR--------------GKTRILV 796
+SGGQ+QRV++ RA+ S + +LR G T I V
Sbjct: 137 PRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYV 196
Query: 797 T-NQLHFLPHVDRIILVSEGMIKEEGSFEEL 826
T +Q+ + DRI +++ G++++ GS +E+
Sbjct: 197 THDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 37.4 bits (85), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 37/153 (24%)
Query: 646 GNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTV 705
GNF+ ++ +NL I G + ++G +G GKT+ + + G P + V
Sbjct: 23 GNFT------AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDV 76
Query: 706 AYVP----QISWIFNA-------TLRKNILF--------GSEFDPAKYWKTVDVSALQHD 746
Y+P IS +F + T+ +NI F E D W ++ ++
Sbjct: 77 TYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRW-AAELLQIEEL 135
Query: 747 LDLLPDRDLTEIGERGVNISGGQKQRVSMARAV 779
L+ P +SGGQ+QRV++ARA+
Sbjct: 136 LNRYP-----------AQLSGGQRQRVAVARAI 157
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 37.4 bits (85), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 37/153 (24%)
Query: 646 GNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTV 705
GNF+ ++ +NL I G + ++G +G GKT+ + + G P + V
Sbjct: 22 GNFT------AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDV 75
Query: 706 AYVP----QISWIFNA-------TLRKNILF--------GSEFDPAKYWKTVDVSALQHD 746
Y+P IS +F + T+ +NI F E D W ++ ++
Sbjct: 76 TYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRW-AAELLQIEEL 134
Query: 747 LDLLPDRDLTEIGERGVNISGGQKQRVSMARAV 779
L+ P +SGGQ+QRV++ARA+
Sbjct: 135 LNRYP-----------AQLSGGQRQRVAVARAI 156
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 37.0 bits (84), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 20/127 (15%)
Query: 663 DIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQ-ISWIFNATLRK 721
+I G ++ IVG G GKT+ V + G P + + TVAY PQ I + T+ +
Sbjct: 308 EIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPT-EGKIEWDLTVAYKPQYIKADYEGTVYE 366
Query: 722 NILFGSEFDPAK----YWKTVDVSALQHDLDLLPDRDLTEIGERGVN-ISGGQKQRVSMA 776
+ S+ D +K ++KT +LL + ++ +R VN +SGG+ QRV++A
Sbjct: 367 LL---SKIDASKLNSNFYKT----------ELLKPLGIIDLYDREVNELSGGELQRVAIA 413
Query: 777 RAVFNSC 783
+
Sbjct: 414 ATLLRDA 420
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 36.6 bits (83), Expect = 0.092, Method: Composition-based stats.
Identities = 50/214 (23%), Positives = 92/214 (42%), Gaps = 49/214 (22%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVA------YVP- 709
+ +++L+I G + ++G +G GKT+ + + G P + + VA +VP
Sbjct: 22 VKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPP 81
Query: 710 ---QISWIFNA-------TLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIG 759
++ +F + T+ NI F P K K + ++ LTE+
Sbjct: 82 KERDVAXVFQSYALYPHXTVYDNIAF-----PLKLRKVPKQEIDKRVREVAEXLGLTELL 136
Query: 760 ERGV-NISGGQKQRVSMARAVFN-----------SCIKEELR--------------GKTR 793
R +SGGQ+QRV++ RA+ S + +LR G T
Sbjct: 137 NRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTT 196
Query: 794 ILVT-NQLHFLPHVDRIILVSEGMIKEEGSFEEL 826
I VT +Q+ DRI + ++G +++ G+ +E+
Sbjct: 197 IYVTHDQVEAXTXGDRIAVXNKGELQQVGTPDEV 230
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 20/120 (16%)
Query: 663 DIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQ-ISWIFNATLRK 721
+I G ++ IVG G GKT+ V + G P + V TVAY PQ I + T+ +
Sbjct: 378 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT-EGKVEWDLTVAYKPQYIKAEYEGTVYE 436
Query: 722 NILFGSEFDPAK----YWKTVDVSALQHDLDLLPDRDLTEIGERGV-NISGGQKQRVSMA 776
+ S+ D +K ++KT +LL + ++ +R V ++SGG+ QRV++A
Sbjct: 437 LL---SKIDSSKLNSNFYKT----------ELLKPLGIIDLYDRNVEDLSGGELQRVAIA 483
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 20/120 (16%)
Query: 663 DIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQ-ISWIFNATLRK 721
+I G ++ IVG G GKT+ V + G P + V TVAY PQ I + T+ +
Sbjct: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT-EGKVEWDLTVAYKPQYIKAEYEGTVYE 422
Query: 722 NILFGSEFDPAK----YWKTVDVSALQHDLDLLPDRDLTEIGERGV-NISGGQKQRVSMA 776
+ S+ D +K ++KT +LL + ++ +R V ++SGG+ QRV++A
Sbjct: 423 LL---SKIDSSKLNSNFYKT----------ELLKPLGIIDLYDRNVEDLSGGELQRVAIA 469
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 34/150 (22%)
Query: 653 KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLG-ELPP-----LKDASVVIRGTVA 706
K L N+N++I G I+G +G GKT+ + + G ++P D V G +
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 707 YVPQ---ISWIF-------NATLRKNILF-------GSEFDPAKYWKTVDVSALQHDLDL 749
P+ I +F N T +NI F E + + + + H L+
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNH 136
Query: 750 LPDRDLTEIGERGVNISGGQKQRVSMARAV 779
P R+L SGGQ+QRV++ARA+
Sbjct: 137 FP-REL----------SGGQQQRVALARAL 155
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 27/37 (72%)
Query: 652 SKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAML 688
++ L N+++ IP+G+ VA+ G +G GK++LV+ +L
Sbjct: 635 AREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 652 SKSPTLSNINLDIPVGSLVAIVGGTGEGKTSL 683
+++ L NI+++IP G LV + G +G GK+SL
Sbjct: 29 ARAHNLKNIDVEIPRGKLVVLTGLSGSGKSSL 60
>pdb|2PT7|A Chain A, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|B Chain B, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|C Chain C, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|D Chain D, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|E Chain E, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|F Chain F, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
Length = 330
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 651 DSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYV 708
D+K +S I I +G V + GGTG GKT+ + +++ E P ++ + I T V
Sbjct: 155 DNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIM-EFIPKEERIISIEDTEEIV 211
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 27/37 (72%)
Query: 652 SKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAML 688
++ L N+++ IP+G+ VA+ G +G GK++LV+ +L
Sbjct: 635 AREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 652 SKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLV 684
+++ L NI+++IP G LV + G +G GK+SL
Sbjct: 29 ARAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLA 61
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 27/37 (72%)
Query: 652 SKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAML 688
++ L N+++ IP+G+ VA+ G +G GK++LV+ +L
Sbjct: 333 AREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 652 SKSPTLSNINLDIPVGSLVAIVGGTGEGKTSL 683
+++ L NI+++IP G LV + G +G GK+SL
Sbjct: 29 ARAHNLKNIDVEIPRGKLVVLTGLSGSGKSSL 60
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 35.0 bits (79), Expect = 0.30, Method: Composition-based stats.
Identities = 43/218 (19%), Positives = 88/218 (40%), Gaps = 50/218 (22%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLG--------------ELPPLKDASVVIR 702
L +++ + G + I+G G GK++L++ + G ++ + A +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 703 GTVAYVPQISWIFNATLRKNILFGSEFDPA---------KYWKTVDVSALQHDLDLLPDR 753
G V + T+ +N+L G E +P K W + ++ +L
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIG-EINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 754 DLTEIGERGV-NISGGQKQRVSMARA------------------------VFNSCIKEEL 788
L+ + +R +SGGQ + V + RA +FN ++ +
Sbjct: 142 KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKA 201
Query: 789 RGKTRILVTNQLHF-LPHVDRIILVSEGMIKEEGSFEE 825
+G T +++ ++L L ++D + ++ G I EG EE
Sbjct: 202 KGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 34.7 bits (78), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 660 INLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP 693
I+LDI S+ AIVG + GK++++ AM LPP
Sbjct: 27 ISLDILENSVTAIVGESASGKSTIIEAMTKTLPP 60
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 34.7 bits (78), Expect = 0.38, Method: Composition-based stats.
Identities = 43/218 (19%), Positives = 88/218 (40%), Gaps = 50/218 (22%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLG--------------ELPPLKDASVVIR 702
L +++ + G + I+G G GK++L++ + G ++ + A +
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 703 GTVAYVPQISWIFNATLRKNILFGSEFDPA---------KYWKTVDVSALQHDLDLLPDR 753
G V + T+ +N+L G E +P K W + ++ +L
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIG-EINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 754 DLTEIGERGV-NISGGQKQRVSMARA------------------------VFNSCIKEEL 788
L+ + +R +SGGQ + V + RA +FN ++ +
Sbjct: 142 KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA 201
Query: 789 RGKTRILVTNQLHF-LPHVDRIILVSEGMIKEEGSFEE 825
+G T +++ ++L L ++D + ++ G I EG EE
Sbjct: 202 KGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 34.3 bits (77), Expect = 0.42, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 27/43 (62%)
Query: 1258 PVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300
PVL+ +S ++ P E + I+G +G GK+++L L + + GE
Sbjct: 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGE 60
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 654 SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP 693
+P L++I+L + G ++ I+G +G GKT+L+ + G P
Sbjct: 17 TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQP 56
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 34.3 bits (77), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAML 688
L NI+++IP+G V + G +G GK+SLV L
Sbjct: 600 LKNIDVEIPLGVFVCVTGVSGSGKSSLVMETL 631
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 34.3 bits (77), Expect = 0.47, Method: Composition-based stats.
Identities = 51/222 (22%), Positives = 90/222 (40%), Gaps = 56/222 (25%)
Query: 660 INLDIPVG-SLVAIVGGTGEGKTSLVSAMLGELPP------LKDASVVI----RGTVAYV 708
+N+D +G ++G TG GK+ + + G + P L A + R + +V
Sbjct: 16 LNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75
Query: 709 PQISWIF-NATLRKNILFG-----SEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERG 762
PQ +F + ++ +NI +G + + + + H LD P R
Sbjct: 76 PQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPAR--------- 126
Query: 763 VNISGGQKQRVSMARAVF-------------------NSCIKEELRGKTRILVTNQLHFL 803
+SGG++QRV++ARA+ + EELR R LH
Sbjct: 127 --LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVT 184
Query: 804 PHV-------DRIILVSEGMIKEEGSFEEL--SKHGRLFQKL 836
+ D + ++ G I E+G +EL +K+G + + L
Sbjct: 185 HDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFL 226
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 33.9 bits (76), Expect = 0.57, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 1241 GSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERG 1299
G++ +D LR R +L G+SF + E G++G GAGK++ L + +++ G
Sbjct: 14 GAVVVKD--LRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG 70
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 33.9 bits (76), Expect = 0.59, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 656 TLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP 692
+L NINL++ G V I+G G GKT+L+ A+ G LP
Sbjct: 20 SLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLP 55
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 33.9 bits (76), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 64/150 (42%), Gaps = 34/150 (22%)
Query: 653 KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLG-ELPP-----LKDASVVIRGTVA 706
K L N+N++I G I+G +G GKT+ + + G ++P D V G +
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 707 YVPQ---ISWIF-------NATLRKNILF-------GSEFDPAKYWKTVDVSALQHDLDL 749
P+ I +F N T +NI F E + + + + H L+
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNH 136
Query: 750 LPDRDLTEIGERGVNISGGQKQRVSMARAV 779
P R+L SG Q+QRV++ARA+
Sbjct: 137 FP-REL----------SGAQQQRVALARAL 155
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 43/218 (19%), Positives = 87/218 (39%), Gaps = 50/218 (22%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLG--------------ELPPLKDASVVIR 702
L +++ + G + I+G G GK++L++ + G ++ + A +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 703 GTVAYVPQISWIFNATLRKNILFGSEFDPA---------KYWKTVDVSALQHDLDLLPDR 753
G V + T+ +N+L G E P K W + ++ +L
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIG-EICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 754 DLTEIGERGV-NISGGQKQRVSMARA------------------------VFNSCIKEEL 788
L+ + +R +SGGQ + V + RA +FN ++ +
Sbjct: 142 KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA 201
Query: 789 RGKTRILVTNQLHF-LPHVDRIILVSEGMIKEEGSFEE 825
+G T +++ ++L L ++D + ++ G I EG EE
Sbjct: 202 KGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 21/141 (14%)
Query: 653 KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDA----SVVIRGTVAYV 708
K + ++ ++ G VA++G +G GKT+ + + G P V++
Sbjct: 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKY 74
Query: 709 PQISWIF-------NATLRKNILF---GSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEI 758
++ +F + T+ +NI F + K V A + +D L DR T++
Sbjct: 75 REVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQL 134
Query: 759 GERGVNISGGQKQRVSMARAV 779
SGGQ+QRV++ARA+
Sbjct: 135 -------SGGQQQRVALARAL 148
>pdb|1G6O|A Chain A, Crystal Structure Of The Helicobacter Pylori Atpase,
Hp0525, In Complex With Adp
pdb|1G6O|B Chain B, Crystal Structure Of The Helicobacter Pylori Atpase,
Hp0525, In Complex With Adp
pdb|1NLY|A Chain A, Crystal Structure Of The Traffic Atpase Of The
Helicobacter Pylori Type Iv Secretion System In Complex
With Atpgammas
pdb|1NLY|B Chain B, Crystal Structure Of The Traffic Atpase Of The
Helicobacter Pylori Type Iv Secretion System In Complex
With Atpgammas
pdb|1NLZ|A Chain A, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|B Chain B, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|C Chain C, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|D Chain D, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|E Chain E, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|F Chain F, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1OPX|A Chain A, Crystal Structure Of The Traffic Atpase (Hp0525) Of The
Helicobacter Pylori Type Iv Secretion System Bound By
Sulfate
pdb|1OPX|B Chain B, Crystal Structure Of The Traffic Atpase (Hp0525) Of The
Helicobacter Pylori Type Iv Secretion System Bound By
Sulfate
Length = 330
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 651 DSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP 692
D+K +S I I +G V + GGTG GKT+ + ++ +P
Sbjct: 155 DNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIXEFIP 196
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 70/141 (49%), Gaps = 21/141 (14%)
Query: 648 FSWDSKSPTLSNINLDIPVGS-----LVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR 702
FS+ S T + L++ G ++ ++G G GKT+L+ + G L P + + +
Sbjct: 354 FSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP-DEGQDIPK 412
Query: 703 GTVAYVPQ-ISWIFNATLRK---NILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEI 758
V+ PQ I+ F T+R+ + G +P ++T V L+ +D + D+++
Sbjct: 413 LNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQ--FQTDVVKPLR--IDDIIDQEVQ-- 466
Query: 759 GERGVNISGGQKQRVSMARAV 779
++SGG+ QRV++ A+
Sbjct: 467 -----HLSGGELQRVAIVLAL 482
>pdb|3PQC|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome Biogenesis
Gtp- Binding Protein Engb (YsxcYIHA) IN COMPLEX WITH GDP
pdb|3PQC|B Chain B, Crystal Structure Of Thermotoga Maritima Ribosome Biogenesis
Gtp- Binding Protein Engb (YsxcYIHA) IN COMPLEX WITH GDP
pdb|3PR1|A Chain A, Crystal Structure Of Apo Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb
Length = 195
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 9/43 (20%)
Query: 1249 VLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALF 1291
V R + PP L G +V VGR+ GKSS+LNALF
Sbjct: 11 VARTPGDYPPPLKG---------EVAFVGRSNVGKSSLLNALF 44
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 32.0 bits (71), Expect = 2.4, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 655 PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-------IRGTVAY 707
P L I + I G++V G G GKT+L+ + L PLK + ++G + +
Sbjct: 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFF 82
Query: 708 VPQ 710
+P+
Sbjct: 83 LPE 85
>pdb|1JJV|A Chain A, Dephospho-Coa Kinase In Complex With Atp
Length = 206
Score = 31.2 bits (69), Expect = 4.2, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 669 LVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVA 706
+V + GG G GKT++ + PL DA VV R VA
Sbjct: 4 IVGLTGGIGSGKTTIANLFTDLGVPLVDADVVAREVVA 41
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 31.2 bits (69), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV 700
+SIK+ + S + K+ L ++LD+ G + AI+G G GK++L + + G ++ V
Sbjct: 2 LSIKDLHVSVEDKA-ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAG-----REDYEV 55
Query: 701 IRGTVAY 707
GTV +
Sbjct: 56 TGGTVEF 62
>pdb|3N75|A Chain A, X-Ray Crystal Structure Of The Escherichia Coli Inducible
Lysine Decarboxylase Ldci
pdb|3N75|B Chain B, X-Ray Crystal Structure Of The Escherichia Coli Inducible
Lysine Decarboxylase Ldci
pdb|3N75|C Chain C, X-Ray Crystal Structure Of The Escherichia Coli Inducible
Lysine Decarboxylase Ldci
pdb|3N75|D Chain D, X-Ray Crystal Structure Of The Escherichia Coli Inducible
Lysine Decarboxylase Ldci
pdb|3N75|E Chain E, X-Ray Crystal Structure Of The Escherichia Coli Inducible
Lysine Decarboxylase Ldci
pdb|3Q16|A Chain A, Linkage Between The Bacterial Acid Stress And Stringent
Responses: The Structure Of The Inducible Lysine
Decarboxylase
pdb|3Q16|B Chain B, Linkage Between The Bacterial Acid Stress And Stringent
Responses: The Structure Of The Inducible Lysine
Decarboxylase
pdb|3Q16|C Chain C, Linkage Between The Bacterial Acid Stress And Stringent
Responses: The Structure Of The Inducible Lysine
Decarboxylase
pdb|3Q16|D Chain D, Linkage Between The Bacterial Acid Stress And Stringent
Responses: The Structure Of The Inducible Lysine
Decarboxylase
pdb|3Q16|E Chain E, Linkage Between The Bacterial Acid Stress And Stringent
Responses: The Structure Of The Inducible Lysine
Decarboxylase
Length = 715
Score = 31.2 bits (69), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 37/84 (44%)
Query: 686 AMLGELPPLKDASVVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQH 745
+LG +P + I V P +W +A + + G ++ KT+DV ++
Sbjct: 270 GILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTYDGLLYNTDFIKKTLDVKSIHF 329
Query: 746 DLDLLPDRDLTEIGERGVNISGGQ 769
D +P + + I E +SGG+
Sbjct: 330 DSAWVPYTNFSPIYEGKCGMSGGR 353
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 30.8 bits (68), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV 700
+SIK+ + S + K+ L ++LD+ G + AI+G G GK++L + + G ++ V
Sbjct: 21 LSIKDLHVSVEDKA-ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAG-----REDYEV 74
Query: 701 IRGTVAY 707
GTV +
Sbjct: 75 TGGTVEF 81
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 30.4 bits (67), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAML 688
L N+++ P+G + ++ G +G GK++LVS L
Sbjct: 513 LDNLDVRFPLGVMTSVTGVSGSGKSTLVSQAL 544
>pdb|3ELL|A Chain A, Structure Of The Hemophore From Pseudomonas Aeruginosa
(Hasap)
pdb|3ELL|B Chain B, Structure Of The Hemophore From Pseudomonas Aeruginosa
(Hasap)
pdb|3MOK|A Chain A, Structure Of Apo Hasap From Pseudomonas Aeruginosa To
1.55a Resolution
Length = 184
Score = 30.0 bits (66), Expect = 9.4, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 645 NGNFSWDSKSPTLSNINLDIPV-----GSLVAIVGGTGEGKTSLVSAMLGELPPLKDASV 699
+G ++ DS+ + SN+ LD P+ G++ +V G G +S + + L D S+
Sbjct: 104 SGGYALDSQEVSFSNLGLDSPIAQGRDGTVHKVVYGLMSGDSSALQGQIDALLKAVDPSL 163
Query: 700 VIRGT 704
I T
Sbjct: 164 SINST 168
>pdb|3MOL|A Chain A, Structure Of Dimeric Holo Hasap H32a Mutant From
Pseudomonas Aeruginosa To 1.20a Resolution
pdb|3MOL|B Chain B, Structure Of Dimeric Holo Hasap H32a Mutant From
Pseudomonas Aeruginosa To 1.20a Resolution
pdb|3MOM|A Chain A, Structure Of Holo Hasap H32a Mutant Complexed With
Imidazole From Pseudomonas Aeruginosa To 2.25a
Resolution
pdb|3MOM|B Chain B, Structure Of Holo Hasap H32a Mutant Complexed With
Imidazole From Pseudomonas Aeruginosa To 2.25a
Resolution
Length = 184
Score = 30.0 bits (66), Expect = 9.5, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 645 NGNFSWDSKSPTLSNINLDIPV-----GSLVAIVGGTGEGKTSLVSAMLGELPPLKDASV 699
+G ++ DS+ + SN+ LD P+ G++ +V G G +S + + L D S+
Sbjct: 104 SGGYALDSQEVSFSNLGLDSPIAQGRDGTVHKVVYGLMSGDSSALQGQIDALLKAVDPSL 163
Query: 700 VIRGT 704
I T
Sbjct: 164 SINST 168
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,908,056
Number of Sequences: 62578
Number of extensions: 1286324
Number of successful extensions: 3396
Number of sequences better than 100.0: 102
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 3074
Number of HSP's gapped (non-prelim): 237
length of query: 1303
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1193
effective length of database: 8,089,757
effective search space: 9651080101
effective search space used: 9651080101
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)