Query 000746
Match_columns 1303
No_of_seqs 831 out of 6050
Neff 8.3
Searched_HMMs 46136
Date Mon Apr 1 22:54:08 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000746.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000746hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0054 Multidrug resistance-a 100.0 1E-184 2E-189 1741.4 126.9 1040 252-1302 122-1198(1381)
2 PLN03130 ABC transporter C fam 100.0 2E-164 4E-169 1653.5 149.6 1268 27-1302 1-1297(1622)
3 PLN03232 ABC transporter C fam 100.0 3E-160 6E-165 1616.4 150.1 1260 32-1302 6-1294(1495)
4 TIGR00957 MRP_assoc_pro multi 100.0 1E-150 2E-155 1525.1 151.0 1224 48-1302 16-1344(1522)
5 TIGR01271 CFTR_protein cystic 100.0 8E-136 2E-140 1374.9 129.4 1039 252-1302 3-1276(1490)
6 PTZ00243 ABC transporter; Prov 100.0 8E-127 2E-131 1287.2 127.6 1046 251-1302 58-1368(1560)
7 KOG0055 Multidrug/pheromone ex 100.0 4.3E-98 9E-103 926.3 92.0 945 329-1302 30-1048(1228)
8 PTZ00265 multidrug resistance 100.0 1.1E-89 2.3E-94 919.0 114.1 964 318-1296 51-1220(1466)
9 KOG0058 Peptide exporter, ABC 100.0 3.6E-70 7.9E-75 643.2 60.2 520 321-840 141-704 (716)
10 COG2274 SunT ABC-type bacterio 100.0 1.9E-65 4.2E-70 632.1 67.5 520 318-839 145-707 (709)
11 PRK11174 cysteine/glutathione 100.0 1.3E-63 2.9E-68 628.3 69.7 517 319-840 14-584 (588)
12 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 3.2E-62 6.8E-67 624.9 68.8 519 317-839 126-684 (686)
13 TIGR00958 3a01208 Conjugate Tr 100.0 2.6E-61 5.6E-66 615.3 66.4 512 323-836 157-710 (711)
14 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 3.9E-61 8.5E-66 617.8 67.3 517 320-837 147-709 (710)
15 TIGR01193 bacteriocin_ABC ABC- 100.0 5.9E-61 1.3E-65 615.3 67.2 516 321-838 150-707 (708)
16 KOG0055 Multidrug/pheromone ex 100.0 4.2E-61 9E-66 597.1 61.8 511 323-840 660-1225(1228)
17 TIGR03375 type_I_sec_LssB type 100.0 1.3E-60 2.9E-65 610.7 67.8 509 318-829 138-689 (694)
18 PRK11176 lipid transporter ATP 100.0 3.6E-60 7.7E-65 596.9 68.3 519 321-839 19-578 (582)
19 COG4988 CydD ABC-type transpor 100.0 1.4E-59 3E-64 545.0 62.4 502 332-840 5-555 (559)
20 COG1132 MdlB ABC-type multidru 100.0 1.8E-59 4E-64 587.1 67.2 512 325-840 13-564 (567)
21 TIGR02203 MsbA_lipidA lipid A 100.0 2.5E-59 5.3E-64 588.8 68.2 518 321-839 8-567 (571)
22 PRK10790 putative multidrug tr 100.0 4.2E-59 9.2E-64 587.3 69.8 516 321-840 17-575 (592)
23 PRK11160 cysteine/glutathione 100.0 1E-58 2.2E-63 579.0 67.4 514 321-838 10-572 (574)
24 PRK13657 cyclic beta-1,2-gluca 100.0 2.7E-58 5.9E-63 579.0 68.9 515 322-840 14-570 (588)
25 TIGR01846 type_I_sec_HlyB type 100.0 2.4E-58 5.3E-63 589.2 69.3 519 320-839 132-691 (694)
26 TIGR02204 MsbA_rel ABC transpo 100.0 1.5E-57 3.2E-62 572.9 69.0 518 319-838 10-573 (576)
27 TIGR02868 CydC thiol reductant 100.0 2.5E-57 5.4E-62 564.1 64.3 478 321-800 7-529 (529)
28 PRK10789 putative multidrug tr 100.0 2.9E-57 6.4E-62 565.8 64.8 504 337-840 5-550 (569)
29 TIGR00957 MRP_assoc_pro multi 100.0 1.8E-57 3.9E-62 616.6 67.6 447 393-840 1031-1520(1522)
30 COG4987 CydC ABC-type transpor 100.0 2.4E-57 5.1E-62 515.9 57.4 453 384-838 73-571 (573)
31 TIGR01192 chvA glucan exporter 100.0 2.3E-56 4.9E-61 558.4 69.5 515 321-840 13-570 (585)
32 PTZ00265 multidrug resistance 100.0 6.3E-57 1.4E-61 603.7 67.0 513 323-839 821-1464(1466)
33 PLN03130 ABC transporter C fam 100.0 2.7E-56 5.9E-61 603.2 67.9 450 392-842 978-1476(1622)
34 TIGR01842 type_I_sec_PrtD type 100.0 6.8E-56 1.5E-60 551.6 65.6 496 324-828 3-542 (544)
35 TIGR02857 CydD thiol reductant 100.0 1.6E-55 3.5E-60 547.9 62.0 484 326-812 2-529 (529)
36 KOG0057 Mitochondrial Fe/S clu 100.0 1.8E-55 3.9E-60 500.6 55.7 505 333-839 36-585 (591)
37 PTZ00243 ABC transporter; Prov 100.0 2.5E-55 5.5E-60 593.4 67.6 445 397-841 1028-1547(1560)
38 PLN03232 ABC transporter C fam 100.0 2.2E-55 4.8E-60 595.4 66.7 449 392-841 975-1472(1495)
39 KOG0056 Heavy metal exporter H 100.0 2.2E-57 4.8E-62 501.4 38.1 505 332-840 220-774 (790)
40 KOG0054 Multidrug resistance-a 100.0 4.1E-55 8.8E-60 557.7 56.3 446 394-839 885-1374(1381)
41 COG4618 ArpD ABC-type protease 100.0 3.8E-54 8.2E-59 484.4 51.0 503 316-828 12-560 (580)
42 TIGR01271 CFTR_protein cystic 100.0 5.6E-53 1.2E-57 570.8 67.0 448 392-841 950-1453(1490)
43 TIGR01194 cyc_pep_trnsptr cycl 100.0 3.6E-49 7.9E-54 491.0 59.3 485 321-820 11-551 (555)
44 COG5265 ATM1 ABC-type transpor 100.0 8.4E-50 1.8E-54 439.5 36.2 440 399-838 14-496 (497)
45 PRK10522 multidrug transporter 100.0 1.8E-47 4E-52 475.9 59.6 485 317-820 3-530 (547)
46 TIGR00954 3a01203 Peroxysomal 100.0 2E-44 4.3E-49 454.0 58.6 479 328-814 97-653 (659)
47 KOG0058 Peptide exporter, ABC 100.0 1.3E-44 2.8E-49 427.2 43.4 374 922-1302 149-526 (716)
48 COG2274 SunT ABC-type bacterio 100.0 5.3E-38 1.1E-42 388.6 47.4 369 924-1302 158-531 (709)
49 TIGR02868 CydC thiol reductant 100.0 1.1E-36 2.3E-41 379.2 48.5 371 927-1302 20-393 (529)
50 TIGR00958 3a01208 Conjugate Tr 100.0 1.9E-36 4.2E-41 386.8 48.5 369 924-1302 165-539 (711)
51 TIGR01193 bacteriocin_ABC ABC- 100.0 2.6E-35 5.7E-40 378.3 48.8 367 925-1302 161-532 (708)
52 PRK11160 cysteine/glutathione 100.0 6.5E-35 1.4E-39 364.7 48.6 371 924-1302 20-398 (574)
53 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 5.9E-35 1.3E-39 373.8 48.6 367 924-1302 140-511 (686)
54 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 5.9E-35 1.3E-39 375.6 48.6 370 926-1302 160-537 (710)
55 TIGR02857 CydD thiol reductant 100.0 6.6E-35 1.4E-39 363.1 47.5 366 926-1302 9-380 (529)
56 COG1132 MdlB ABC-type multidru 100.0 6E-35 1.3E-39 365.9 47.0 369 925-1302 19-387 (567)
57 PRK11174 cysteine/glutathione 100.0 1.1E-34 2.4E-39 365.7 48.2 374 924-1302 26-407 (588)
58 TIGR03375 type_I_sec_LssB type 100.0 1.3E-34 2.7E-39 371.2 49.1 366 926-1302 153-523 (694)
59 PRK10790 putative multidrug tr 100.0 6E-34 1.3E-38 359.1 48.8 367 925-1302 28-399 (592)
60 TIGR01846 type_I_sec_HlyB type 100.0 5.2E-34 1.1E-38 365.2 48.8 364 928-1302 147-515 (694)
61 PRK11176 lipid transporter ATP 100.0 6.2E-34 1.3E-38 358.8 48.7 367 928-1302 33-401 (582)
62 PRK14257 phosphate ABC transpo 100.0 9E-37 2E-41 352.0 18.4 240 576-829 23-314 (329)
63 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.8E-33 3.9E-38 350.4 48.6 369 924-1302 22-400 (555)
64 TIGR02203 MsbA_lipidA lipid A 100.0 1.8E-33 3.8E-38 354.4 49.0 370 925-1302 19-390 (571)
65 TIGR01192 chvA glucan exporter 100.0 2.8E-33 6.1E-38 350.4 48.6 368 924-1302 23-393 (585)
66 COG4615 PvdE ABC-type sideroph 100.0 1.5E-33 3.3E-38 307.1 38.6 481 318-820 4-529 (546)
67 PRK10789 putative multidrug tr 100.0 2E-33 4.3E-38 351.4 45.0 332 960-1302 38-373 (569)
68 TIGR02204 MsbA_rel ABC transpo 100.0 8.3E-33 1.8E-37 348.4 48.5 370 925-1302 23-398 (576)
69 cd03289 ABCC_CFTR2 The CFTR su 100.0 2.6E-35 5.7E-40 331.2 22.1 200 640-841 2-238 (275)
70 PRK13657 cyclic beta-1,2-gluca 100.0 3.1E-32 6.7E-37 343.0 49.1 367 925-1302 24-393 (588)
71 KOG0056 Heavy metal exporter H 100.0 1.1E-33 2.5E-38 313.9 27.1 361 930-1302 225-596 (790)
72 PRK10522 multidrug transporter 100.0 5.5E-31 1.2E-35 328.2 47.2 317 972-1302 62-381 (547)
73 TIGR01842 type_I_sec_PrtD type 100.0 6E-31 1.3E-35 328.0 46.9 358 927-1302 13-376 (544)
74 COG4987 CydC ABC-type transpor 100.0 1E-30 2.2E-35 298.8 42.4 328 966-1302 66-396 (573)
75 COG4178 ABC-type uncharacteriz 100.0 1.9E-29 4.1E-34 299.5 50.6 416 392-813 111-587 (604)
76 TIGR00956 3a01205 Pleiotropic 100.0 2.1E-31 4.6E-36 358.1 36.6 169 655-827 75-299 (1394)
77 COG1126 GlnQ ABC-type polar am 100.0 4.2E-33 9.1E-38 284.5 15.0 179 640-830 2-227 (240)
78 COG4988 CydD ABC-type transpor 100.0 1.1E-29 2.4E-34 296.0 43.9 336 959-1302 41-379 (559)
79 TIGR00954 3a01203 Peroxysomal 100.0 2.3E-30 4.9E-35 326.7 38.9 378 922-1302 98-510 (659)
80 COG1123 ATPase components of v 100.0 1.9E-31 4.1E-36 312.7 26.4 181 640-829 5-245 (539)
81 cd03291 ABCC_CFTR1 The CFTR su 100.0 1E-30 2.2E-35 295.1 26.8 194 637-834 36-253 (282)
82 KOG0057 Mitochondrial Fe/S clu 100.0 8.6E-29 1.9E-33 283.1 39.5 334 959-1302 75-409 (591)
83 cd03252 ABCC_Hemolysin The ABC 100.0 7E-31 1.5E-35 292.4 21.8 196 641-837 1-234 (237)
84 cd03288 ABCC_SUR2 The SUR doma 100.0 1.8E-30 3.9E-35 292.0 23.4 200 638-837 17-253 (257)
85 COG1117 PstB ABC-type phosphat 100.0 1.3E-31 2.9E-36 271.6 12.7 184 639-830 6-239 (253)
86 cd03250 ABCC_MRP_domain1 Domai 100.0 1.7E-30 3.7E-35 282.2 20.1 175 641-816 1-204 (204)
87 COG1135 AbcC ABC-type metal io 100.0 3.3E-31 7.1E-36 284.4 14.0 179 641-830 2-233 (339)
88 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.6E-29 5.7E-34 312.9 32.8 185 640-827 4-247 (552)
89 COG1125 OpuBA ABC-type proline 100.0 3.1E-31 6.7E-36 275.5 12.5 178 641-830 2-227 (309)
90 COG3839 MalK ABC-type sugar tr 100.0 1.1E-30 2.4E-35 293.4 17.7 179 640-830 3-225 (338)
91 COG1116 TauB ABC-type nitrate/ 100.0 1.2E-30 2.5E-35 276.0 16.6 166 640-818 3-212 (248)
92 cd03254 ABCC_Glucan_exporter_l 100.0 3.6E-30 7.8E-35 285.2 21.2 189 640-829 2-227 (229)
93 COG3842 PotA ABC-type spermidi 100.0 9.6E-31 2.1E-35 295.4 16.6 179 639-830 4-228 (352)
94 PRK11819 putative ABC transpor 100.0 6.7E-29 1.4E-33 309.2 34.8 184 639-827 5-249 (556)
95 cd03253 ABCC_ATM1_transporter 100.0 6.7E-30 1.5E-34 284.4 23.1 194 641-835 1-231 (236)
96 TIGR03269 met_CoM_red_A2 methy 100.0 9E-30 2E-34 315.7 26.4 169 641-821 1-251 (520)
97 PRK15064 ABC transporter ATP-b 100.0 2.7E-29 5.9E-34 311.8 30.6 183 641-827 2-241 (530)
98 COG1120 FepC ABC-type cobalami 100.0 2E-30 4.3E-35 280.5 17.4 177 640-829 2-229 (258)
99 cd03251 ABCC_MsbA MsbA is an e 100.0 4.9E-30 1.1E-34 285.2 21.0 193 641-834 1-231 (234)
100 cd03244 ABCC_MRP_domain2 Domai 100.0 5.5E-30 1.2E-34 282.2 20.9 183 640-822 2-220 (221)
101 TIGR01257 rim_protein retinal- 100.0 8.3E-28 1.8E-32 321.5 45.6 180 639-829 927-1150(2272)
102 COG1127 Ttg2A ABC-type transpo 100.0 5.2E-30 1.1E-34 266.0 18.8 188 638-837 6-245 (263)
103 PRK10261 glutathione transport 100.0 2.1E-29 4.5E-34 316.8 27.8 180 639-826 11-256 (623)
104 COG3840 ThiQ ABC-type thiamine 100.0 2.8E-30 6E-35 254.9 14.6 174 641-829 2-220 (231)
105 PRK13549 xylose transporter AT 100.0 1.4E-29 2.9E-34 312.8 24.5 173 640-821 5-225 (506)
106 COG1118 CysA ABC-type sulfate/ 100.0 3.4E-30 7.3E-35 275.6 15.2 179 640-830 2-229 (345)
107 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1.6E-29 3.5E-34 271.7 20.5 178 639-829 3-228 (254)
108 PRK09700 D-allose transporter 100.0 2.8E-29 6.1E-34 310.5 25.6 174 640-822 5-228 (510)
109 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 2.7E-29 5.8E-34 279.9 22.4 193 641-834 1-232 (238)
110 PRK10938 putative molybdenum t 100.0 9.8E-29 2.1E-33 304.4 28.1 171 640-823 3-219 (490)
111 PRK15134 microcin C ABC transp 100.0 5.8E-29 1.2E-33 308.9 26.1 177 640-824 5-242 (529)
112 COG1136 SalX ABC-type antimicr 100.0 1.8E-29 3.9E-34 267.8 17.8 169 641-819 2-222 (226)
113 PRK11288 araG L-arabinose tran 100.0 8.1E-29 1.8E-33 305.5 25.3 172 640-819 4-220 (501)
114 cd03245 ABCC_bacteriocin_expor 100.0 8.2E-29 1.8E-33 272.6 21.8 181 640-821 2-220 (220)
115 COG2884 FtsE Predicted ATPase 100.0 1.6E-29 3.4E-34 252.1 13.5 170 641-821 2-219 (223)
116 TIGR02633 xylG D-xylose ABC tr 100.0 1.4E-28 3.1E-33 303.7 24.6 169 641-819 2-221 (500)
117 COG3638 ABC-type phosphate/pho 100.0 2.2E-29 4.8E-34 260.7 13.7 178 640-828 3-237 (258)
118 PRK13631 cbiO cobalt transport 100.0 1.3E-28 2.7E-33 283.6 21.1 189 636-831 17-268 (320)
119 PLN03140 ABC transporter G fam 100.0 6.7E-27 1.4E-31 313.1 40.6 172 655-827 179-426 (1470)
120 COG1122 CbiO ABC-type cobalt t 100.0 6.6E-29 1.4E-33 269.6 16.9 179 640-829 3-229 (235)
121 PRK11650 ugpC glycerol-3-phosp 100.0 1.5E-28 3.3E-33 286.4 19.9 179 640-830 3-226 (356)
122 cd03290 ABCC_SUR1_N The SUR do 100.0 2.4E-28 5.2E-33 268.3 19.9 175 642-816 2-218 (218)
123 PRK10636 putative ABC transpor 100.0 2.9E-27 6.4E-32 297.4 32.2 183 641-827 2-235 (638)
124 COG5265 ATM1 ABC-type transpor 100.0 3.5E-27 7.6E-32 261.2 28.0 316 980-1302 4-321 (497)
125 KOG0060 Long-chain acyl-CoA tr 100.0 3.2E-25 6.9E-30 254.4 44.3 422 391-814 146-641 (659)
126 COG1124 DppF ABC-type dipeptid 100.0 2.4E-28 5.2E-33 255.4 17.0 179 640-829 3-232 (252)
127 TIGR02314 ABC_MetN D-methionin 100.0 1.5E-28 3.2E-33 283.9 16.8 178 641-829 2-231 (343)
128 cd03369 ABCC_NFT1 Domain 2 of 100.0 5E-28 1.1E-32 263.6 20.0 168 637-822 3-206 (207)
129 cd03261 ABC_Org_Solvent_Resist 100.0 2.7E-28 5.8E-33 271.2 17.2 177 641-829 1-227 (235)
130 PRK11432 fbpC ferric transport 100.0 3.6E-28 7.7E-33 282.4 18.6 179 639-830 5-228 (351)
131 PRK13650 cbiO cobalt transport 100.0 4.1E-28 9E-33 275.7 17.8 180 640-830 4-231 (279)
132 PRK09452 potA putrescine/sperm 100.0 7E-28 1.5E-32 281.7 19.6 179 639-830 13-236 (375)
133 PRK13647 cbiO cobalt transport 100.0 4.5E-28 9.7E-33 274.7 17.2 177 640-827 4-226 (274)
134 cd03248 ABCC_TAP TAP, the Tran 100.0 1E-27 2.2E-32 265.1 18.9 180 638-817 9-226 (226)
135 PRK13637 cbiO cobalt transport 100.0 9.1E-28 2E-32 273.8 19.0 181 640-829 2-235 (287)
136 COG0488 Uup ATPase components 100.0 9E-27 1.9E-31 280.1 28.1 182 640-826 3-238 (530)
137 PRK13643 cbiO cobalt transport 100.0 1.1E-27 2.5E-32 273.1 19.3 179 641-829 2-234 (288)
138 PRK11147 ABC transporter ATPas 100.0 2.2E-26 4.7E-31 290.5 32.7 182 640-827 3-242 (635)
139 cd03260 ABC_PstB_phosphate_tra 100.0 6.6E-28 1.4E-32 266.7 16.6 175 641-825 1-226 (227)
140 PRK13651 cobalt transporter AT 100.0 1.1E-27 2.3E-32 274.4 18.6 180 641-830 3-256 (305)
141 TIGR03265 PhnT2 putative 2-ami 100.0 6.4E-28 1.4E-32 280.9 16.9 178 640-830 4-226 (353)
142 PRK14269 phosphate ABC transpo 100.0 9.3E-28 2E-32 268.5 17.4 180 640-828 2-230 (246)
143 PRK13634 cbiO cobalt transport 100.0 1.5E-27 3.4E-32 272.3 19.4 180 641-830 3-237 (290)
144 PRK13635 cbiO cobalt transport 100.0 1.9E-27 4.2E-32 270.0 19.8 182 640-832 5-233 (279)
145 PRK13640 cbiO cobalt transport 100.0 2.5E-27 5.3E-32 269.8 20.4 180 639-829 4-233 (282)
146 PRK14250 phosphate ABC transpo 100.0 2.7E-27 5.8E-32 263.8 20.2 179 640-829 3-222 (241)
147 cd03296 ABC_CysA_sulfate_impor 100.0 2.1E-27 4.6E-32 264.6 19.2 176 641-828 3-226 (239)
148 COG0410 LivF ABC-type branched 100.0 1.2E-27 2.7E-32 248.5 16.0 186 640-831 3-229 (237)
149 PRK13646 cbiO cobalt transport 100.0 1.9E-27 4E-32 271.3 19.0 184 640-830 2-237 (286)
150 TIGR03258 PhnT 2-aminoethylpho 100.0 1E-27 2.2E-32 279.5 16.9 180 639-830 4-230 (362)
151 PRK14242 phosphate transporter 99.9 2E-27 4.2E-32 267.3 18.6 182 639-829 5-238 (253)
152 PRK10851 sulfate/thiosulfate t 99.9 1.8E-27 3.9E-32 277.1 18.5 178 640-830 2-228 (353)
153 TIGR02315 ABC_phnC phosphonate 99.9 1.5E-27 3.2E-32 266.8 17.2 175 641-826 2-233 (243)
154 PRK13636 cbiO cobalt transport 99.9 2.1E-27 4.6E-32 270.4 18.6 181 640-831 5-234 (283)
155 PRK14273 phosphate ABC transpo 99.9 2.5E-27 5.3E-32 266.6 18.7 182 639-828 6-238 (254)
156 PRK11000 maltose/maltodextrin 99.9 1.9E-27 4.1E-32 279.3 18.2 177 640-829 3-224 (369)
157 PRK13644 cbiO cobalt transport 99.9 2.6E-27 5.6E-32 268.5 18.4 178 641-829 2-225 (274)
158 TIGR00972 3a0107s01c2 phosphat 99.9 2.7E-27 5.9E-32 265.1 18.3 180 641-828 2-232 (247)
159 cd03263 ABC_subfamily_A The AB 99.9 2.6E-27 5.7E-32 260.7 17.7 175 641-826 1-219 (220)
160 TIGR01186 proV glycine betaine 99.9 1.3E-27 2.8E-32 277.5 16.0 165 654-829 6-220 (363)
161 cd03256 ABC_PhnC_transporter A 99.9 3.1E-27 6.8E-32 264.0 18.3 176 641-827 1-233 (241)
162 PRK10744 pstB phosphate transp 99.9 3.9E-27 8.5E-32 265.6 18.9 183 639-829 12-245 (260)
163 cd03258 ABC_MetN_methionine_tr 99.9 2.4E-27 5.2E-32 263.3 16.8 177 641-828 2-230 (233)
164 cd03219 ABC_Mj1267_LivG_branch 99.9 3.1E-27 6.8E-32 263.0 17.7 184 641-828 1-232 (236)
165 cd03226 ABC_cobalt_CbiO_domain 99.9 2.7E-27 5.9E-32 257.4 16.8 165 642-818 1-205 (205)
166 PRK14237 phosphate transporter 99.9 6.2E-27 1.3E-31 264.7 19.6 184 638-829 18-252 (267)
167 PRK11153 metN DL-methionine tr 99.9 3.3E-27 7.1E-32 275.1 17.8 178 641-829 2-231 (343)
168 PRK13632 cbiO cobalt transport 99.9 8E-27 1.7E-31 264.4 20.5 181 639-830 6-233 (271)
169 cd03259 ABC_Carb_Solutes_like 99.9 3E-27 6.5E-32 258.8 15.8 169 641-821 1-213 (213)
170 PRK13633 cobalt transporter AT 99.9 7.8E-27 1.7E-31 265.6 19.8 180 640-830 4-235 (280)
171 cd03293 ABC_NrtD_SsuB_transpor 99.9 3.2E-27 7E-32 259.7 16.1 171 641-823 1-218 (220)
172 PRK14235 phosphate transporter 99.9 6.6E-27 1.4E-31 264.5 19.0 183 638-828 17-251 (267)
173 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 2.4E-27 5.2E-32 260.6 15.0 166 641-817 1-218 (218)
174 PLN03073 ABC transporter F fam 99.9 1.7E-25 3.7E-30 281.7 33.7 181 639-826 176-429 (718)
175 PRK13652 cbiO cobalt transport 99.9 1.1E-26 2.4E-31 263.9 20.8 179 640-830 3-229 (277)
176 PRK11247 ssuB aliphatic sulfon 99.9 7E-27 1.5E-31 261.4 18.7 174 639-824 11-219 (257)
177 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 8.5E-27 1.8E-31 259.2 19.3 180 641-829 2-222 (236)
178 PRK14248 phosphate ABC transpo 99.9 5.3E-27 1.1E-31 265.8 17.9 184 638-829 19-253 (268)
179 PRK11607 potG putrescine trans 99.9 4.3E-27 9.4E-32 275.6 17.7 181 638-830 17-241 (377)
180 PRK14249 phosphate ABC transpo 99.9 6.5E-27 1.4E-31 262.6 18.3 183 639-829 3-236 (251)
181 cd03265 ABC_DrrA DrrA is the A 99.9 4.9E-27 1.1E-31 258.3 16.7 173 641-826 1-219 (220)
182 PRK14239 phosphate transporter 99.9 9.5E-27 2.1E-31 261.7 18.8 182 640-829 5-237 (252)
183 PRK14274 phosphate ABC transpo 99.9 1.2E-26 2.5E-31 261.7 19.6 183 639-829 11-244 (259)
184 PRK14236 phosphate transporter 99.9 6.2E-27 1.3E-31 265.4 17.4 183 638-828 23-256 (272)
185 PRK09536 btuD corrinoid ABC tr 99.9 8.2E-27 1.8E-31 274.0 18.9 178 640-829 3-229 (402)
186 cd03294 ABC_Pro_Gly_Bertaine T 99.9 3.6E-27 7.8E-32 266.7 15.2 176 642-829 26-251 (269)
187 PRK14245 phosphate ABC transpo 99.9 7.2E-27 1.6E-31 262.2 17.5 183 639-829 2-235 (250)
188 TIGR00960 3a0501s02 Type II (G 99.9 4.5E-27 9.7E-32 258.0 15.4 166 641-817 2-216 (216)
189 cd03247 ABCC_cytochrome_bd The 99.9 1.2E-26 2.6E-31 246.1 18.2 142 641-821 1-178 (178)
190 PRK14244 phosphate ABC transpo 99.9 5.1E-27 1.1E-31 263.5 16.0 181 641-829 6-238 (251)
191 cd03295 ABC_OpuCA_Osmoprotecti 99.9 7E-27 1.5E-31 260.9 16.8 183 641-828 1-225 (242)
192 PRK13642 cbiO cobalt transport 99.9 1.3E-26 2.8E-31 263.4 19.2 181 640-831 4-232 (277)
193 cd03224 ABC_TM1139_LivF_branch 99.9 7.6E-27 1.7E-31 257.4 16.8 180 641-827 1-220 (222)
194 PRK14252 phosphate ABC transpo 99.9 1.5E-26 3.3E-31 261.6 19.4 184 637-828 13-249 (265)
195 PRK13639 cbiO cobalt transport 99.9 8.2E-27 1.8E-31 264.7 17.2 179 641-830 2-228 (275)
196 PRK14251 phosphate ABC transpo 99.9 9.1E-27 2E-31 261.6 17.5 182 640-829 4-236 (251)
197 PRK14268 phosphate ABC transpo 99.9 1E-26 2.3E-31 261.8 17.8 182 639-828 11-242 (258)
198 PRK14240 phosphate transporter 99.9 1.3E-26 2.8E-31 260.2 18.4 181 640-828 3-234 (250)
199 PRK11629 lolD lipoprotein tran 99.9 9E-27 2E-31 258.5 16.9 172 640-822 5-228 (233)
200 PRK13648 cbiO cobalt transport 99.9 1.7E-26 3.6E-31 261.7 19.2 180 639-830 6-233 (269)
201 PRK14259 phosphate ABC transpo 99.9 2.1E-26 4.5E-31 260.5 19.9 183 639-829 12-254 (269)
202 PRK13645 cbiO cobalt transport 99.9 1.8E-26 4E-31 264.0 19.4 186 639-830 5-242 (289)
203 PRK14270 phosphate ABC transpo 99.9 1.3E-26 2.9E-31 260.1 17.9 183 639-829 3-236 (251)
204 PRK13641 cbiO cobalt transport 99.9 2E-26 4.3E-31 263.1 19.5 180 640-829 2-235 (287)
205 cd03301 ABC_MalK_N The N-termi 99.9 1E-26 2.2E-31 254.6 16.4 168 641-821 1-213 (213)
206 PRK14254 phosphate ABC transpo 99.9 1.6E-26 3.4E-31 263.2 18.4 184 637-828 36-269 (285)
207 PRK14238 phosphate transporter 99.9 1.8E-26 3.9E-31 261.3 18.7 184 638-829 22-256 (271)
208 cd03268 ABC_BcrA_bacitracin_re 99.9 1.6E-26 3.6E-31 251.9 17.7 168 641-821 1-208 (208)
209 cd03266 ABC_NatA_sodium_export 99.9 1.1E-26 2.3E-31 255.5 16.1 170 641-821 2-218 (218)
210 PRK10771 thiQ thiamine transpo 99.9 5.7E-26 1.2E-30 251.9 22.0 176 641-830 2-221 (232)
211 PRK10575 iron-hydroxamate tran 99.9 2.4E-26 5.2E-31 259.8 19.4 177 639-828 10-237 (265)
212 PRK13537 nodulation ABC transp 99.9 1.2E-26 2.7E-31 266.3 17.2 179 639-829 6-228 (306)
213 cd03223 ABCD_peroxisomal_ALDP 99.9 2.1E-26 4.5E-31 240.8 17.4 138 641-815 1-163 (166)
214 PRK10619 histidine/lysine/argi 99.9 1.7E-26 3.7E-31 260.1 17.9 178 639-828 4-241 (257)
215 PRK13649 cbiO cobalt transport 99.9 1.9E-26 4E-31 263.0 18.4 179 641-829 3-235 (280)
216 PRK14247 phosphate ABC transpo 99.9 1.8E-26 3.9E-31 259.1 17.9 182 640-829 3-235 (250)
217 TIGR03005 ectoine_ehuA ectoine 99.9 1.9E-26 4.2E-31 259.0 18.2 177 641-829 1-237 (252)
218 PRK14253 phosphate ABC transpo 99.9 1.5E-26 3.3E-31 259.5 17.3 181 640-828 3-233 (249)
219 cd03218 ABC_YhbG The ABC trans 99.9 1.5E-26 3.2E-31 256.9 17.0 180 641-828 1-222 (232)
220 PRK09493 glnQ glutamine ABC tr 99.9 2.4E-26 5.3E-31 256.3 18.6 177 641-829 2-226 (240)
221 PRK14271 phosphate ABC transpo 99.9 2.1E-26 4.6E-31 261.1 18.4 188 638-829 19-252 (276)
222 PRK14267 phosphate ABC transpo 99.9 1.5E-26 3.3E-31 260.1 16.8 182 640-829 4-238 (253)
223 PRK14262 phosphate ABC transpo 99.9 1.4E-26 2.9E-31 260.0 16.3 182 640-829 3-235 (250)
224 cd03264 ABC_drug_resistance_li 99.9 1.8E-26 3.8E-31 252.3 16.8 167 641-821 1-211 (211)
225 PRK14261 phosphate ABC transpo 99.9 1.5E-26 3.4E-31 259.9 16.7 182 640-829 6-238 (253)
226 PRK14243 phosphate transporter 99.9 3.4E-26 7.3E-31 258.3 19.5 183 639-829 9-249 (264)
227 cd03298 ABC_ThiQ_thiamine_tran 99.9 2.7E-26 5.9E-31 250.8 18.1 166 641-821 1-211 (211)
228 PRK15079 oligopeptide ABC tran 99.9 2.1E-26 4.5E-31 266.2 18.0 182 639-830 7-253 (331)
229 cd03235 ABC_Metallic_Cations A 99.9 1.9E-26 4.2E-31 252.4 16.8 165 643-821 2-213 (213)
230 TIGR03411 urea_trans_UrtD urea 99.9 3E-26 6.5E-31 256.0 18.6 186 640-828 2-231 (242)
231 PRK09984 phosphonate/organopho 99.9 4.9E-26 1.1E-30 257.1 20.4 175 640-826 4-240 (262)
232 PRK13548 hmuV hemin importer A 99.9 5.1E-26 1.1E-30 255.9 20.3 176 641-828 3-230 (258)
233 PRK10584 putative ABC transpor 99.9 3.1E-26 6.6E-31 253.6 18.2 171 639-820 5-227 (228)
234 PRK11831 putative ABC transpor 99.9 2.4E-26 5.3E-31 260.2 17.7 179 639-829 6-234 (269)
235 PRK10247 putative ABC transpor 99.9 2.1E-26 4.6E-31 253.8 16.8 175 639-824 6-223 (225)
236 PRK11124 artP arginine transpo 99.9 3.7E-26 8.1E-31 255.2 18.8 180 640-827 2-229 (242)
237 TIGR03415 ABC_choXWV_ATP choli 99.9 2.2E-26 4.8E-31 268.2 17.5 163 655-829 38-255 (382)
238 PRK10070 glycine betaine trans 99.9 2.7E-26 5.9E-31 269.5 18.3 164 655-829 42-255 (400)
239 TIGR03410 urea_trans_UrtE urea 99.9 1.2E-26 2.6E-31 257.2 14.4 175 641-826 1-219 (230)
240 PRK11264 putative amino-acid A 99.9 4.6E-26 9.9E-31 255.9 19.1 181 640-828 3-233 (250)
241 PRK10895 lipopolysaccharide AB 99.9 2.9E-26 6.2E-31 255.9 17.3 181 640-828 3-226 (241)
242 TIGR02211 LolD_lipo_ex lipopro 99.9 2.6E-26 5.6E-31 253.0 16.7 167 641-818 2-220 (221)
243 PRK14275 phosphate ABC transpo 99.9 3.2E-26 7E-31 260.9 18.0 184 638-829 37-271 (286)
244 TIGR02769 nickel_nikE nickel i 99.9 3.9E-26 8.4E-31 258.1 18.5 187 640-836 2-249 (265)
245 cd03257 ABC_NikE_OppD_transpor 99.9 3E-26 6.6E-31 253.8 17.3 174 641-821 2-228 (228)
246 TIGR02673 FtsE cell division A 99.9 1.4E-26 3E-31 253.8 14.4 165 641-816 2-214 (214)
247 PRK14256 phosphate ABC transpo 99.9 5.2E-26 1.1E-30 255.5 19.1 183 639-829 3-237 (252)
248 cd03300 ABC_PotA_N PotA is an 99.9 2.2E-26 4.7E-31 255.1 15.8 176 641-828 1-220 (232)
249 TIGR00968 3a0106s01 sulfate AB 99.9 4.1E-26 8.9E-31 253.6 18.0 176 641-828 1-220 (237)
250 PRK14264 phosphate ABC transpo 99.9 5.4E-26 1.2E-30 261.4 19.5 182 639-828 44-289 (305)
251 PRK11231 fecE iron-dicitrate t 99.9 5.7E-26 1.2E-30 255.5 19.2 176 641-828 3-227 (255)
252 TIGR03873 F420-0_ABC_ATP propo 99.9 5E-26 1.1E-30 256.2 18.6 175 641-828 2-226 (256)
253 cd03292 ABC_FtsE_transporter F 99.9 2.6E-26 5.7E-31 251.7 15.8 166 641-817 1-214 (214)
254 PRK14266 phosphate ABC transpo 99.9 3.3E-26 7.1E-31 256.9 16.9 182 640-829 3-235 (250)
255 cd03299 ABC_ModC_like Archeal 99.9 5.6E-26 1.2E-30 252.2 18.5 175 641-829 1-220 (235)
256 TIGR01288 nodI ATP-binding ABC 99.9 4.2E-26 9.1E-31 262.5 17.5 177 640-828 4-224 (303)
257 cd03269 ABC_putative_ATPase Th 99.9 3.6E-26 7.9E-31 249.6 16.1 168 641-821 1-210 (210)
258 PRK13638 cbiO cobalt transport 99.9 5.7E-26 1.2E-30 257.6 18.1 177 641-829 2-226 (271)
259 PRK11614 livF leucine/isoleuci 99.9 5.3E-26 1.2E-30 253.1 17.4 182 640-828 5-226 (237)
260 PRK11144 modC molybdate transp 99.9 5.5E-26 1.2E-30 265.8 18.2 175 641-830 2-220 (352)
261 PRK14263 phosphate ABC transpo 99.9 6.8E-26 1.5E-30 254.9 18.1 183 639-829 7-246 (261)
262 PRK14265 phosphate ABC transpo 99.9 1.4E-25 3E-30 254.4 20.7 186 636-829 16-259 (274)
263 PRK10253 iron-enterobactin tra 99.9 9.2E-26 2E-30 255.0 19.0 177 639-828 6-233 (265)
264 PRK11300 livG leucine/isoleuci 99.9 1E-25 2.3E-30 253.7 19.4 185 640-828 5-243 (255)
265 TIGR01277 thiQ thiamine ABC tr 99.9 9.1E-26 2E-30 246.8 18.1 168 641-822 1-212 (213)
266 PRK10908 cell division protein 99.9 4.9E-26 1.1E-30 250.8 15.9 168 641-819 2-217 (222)
267 PRK13536 nodulation factor exp 99.9 6.4E-26 1.4E-30 262.8 17.6 182 639-828 40-261 (340)
268 PRK11308 dppF dipeptide transp 99.9 8.1E-26 1.8E-30 261.1 18.4 190 639-838 4-256 (327)
269 TIGR03522 GldA_ABC_ATP gliding 99.9 6.4E-26 1.4E-30 260.4 17.3 177 641-829 3-222 (301)
270 PRK14260 phosphate ABC transpo 99.9 1E-25 2.2E-30 254.0 18.4 181 640-828 7-243 (259)
271 TIGR03740 galliderm_ABC gallid 99.9 1E-25 2.2E-30 248.5 17.9 172 641-825 1-210 (223)
272 PRK09544 znuC high-affinity zi 99.9 2.2E-25 4.8E-30 248.9 20.6 183 640-837 4-217 (251)
273 PRK14246 phosphate ABC transpo 99.9 1.4E-25 2.9E-30 252.0 18.7 184 638-829 8-242 (257)
274 PRK11248 tauB taurine transpor 99.9 1.2E-25 2.5E-30 252.2 18.0 170 641-823 2-215 (255)
275 PRK14272 phosphate ABC transpo 99.9 1.4E-25 3E-30 252.3 18.6 182 640-829 4-237 (252)
276 cd03225 ABC_cobalt_CbiO_domain 99.9 4.5E-26 9.8E-31 249.1 14.1 164 642-816 1-211 (211)
277 PRK14255 phosphate ABC transpo 99.9 1.5E-25 3.2E-30 251.9 18.4 183 639-829 4-237 (252)
278 cd03246 ABCC_Protease_Secretio 99.9 8.6E-26 1.9E-30 238.3 15.0 136 641-817 1-173 (173)
279 PRK10418 nikD nickel transport 99.9 1.9E-25 4.1E-30 251.0 18.5 179 640-829 4-231 (254)
280 PRK13547 hmuV hemin importer A 99.9 1.2E-25 2.7E-30 253.5 16.7 175 641-828 2-244 (272)
281 cd03262 ABC_HisP_GlnQ_permease 99.9 9.9E-26 2.1E-30 246.9 15.3 165 641-817 1-213 (213)
282 PRK15112 antimicrobial peptide 99.9 3.3E-25 7.2E-30 250.6 19.9 188 640-837 4-250 (267)
283 PRK14258 phosphate ABC transpo 99.9 1.4E-25 3E-30 253.1 16.4 183 639-829 6-246 (261)
284 PRK11701 phnK phosphonate C-P 99.9 2.2E-25 4.8E-30 251.2 17.9 183 640-829 6-242 (258)
285 TIGR01978 sufC FeS assembly AT 99.9 2.1E-25 4.5E-30 249.6 17.3 175 641-827 1-233 (243)
286 PRK11022 dppD dipeptide transp 99.9 2E-25 4.4E-30 258.0 17.7 181 640-829 3-244 (326)
287 PRK14241 phosphate transporter 99.9 3.2E-25 6.9E-30 249.9 18.6 181 640-828 4-242 (258)
288 cd03234 ABCG_White The White s 99.9 1.7E-25 3.6E-30 247.1 16.0 179 641-821 4-226 (226)
289 PRK15056 manganese/iron transp 99.9 3.5E-25 7.6E-30 251.1 18.7 176 640-828 6-230 (272)
290 PRK09473 oppD oligopeptide tra 99.9 3.3E-25 7.1E-30 256.4 18.5 194 639-838 11-263 (330)
291 TIGR02982 heterocyst_DevA ABC 99.9 2.3E-25 5.1E-30 244.9 16.4 166 641-817 2-219 (220)
292 cd03213 ABCG_EPDR ABCG transpo 99.9 2.5E-25 5.4E-30 239.1 16.2 149 640-821 3-194 (194)
293 TIGR02142 modC_ABC molybdenum 99.9 2.6E-25 5.7E-30 260.6 17.4 172 645-830 4-223 (354)
294 COG4181 Predicted ABC-type tra 99.9 1.2E-25 2.7E-30 219.5 11.9 169 640-819 6-226 (228)
295 TIGR01188 drrA daunorubicin re 99.9 2.8E-25 6E-30 255.6 16.4 167 649-828 2-213 (302)
296 PRK10419 nikE nickel transport 99.9 6.3E-25 1.4E-29 248.3 18.4 185 640-831 3-244 (268)
297 COG4175 ProV ABC-type proline/ 99.9 4.1E-25 9E-30 236.5 15.6 189 640-839 4-267 (386)
298 COG4619 ABC-type uncharacteriz 99.9 4.7E-26 1E-30 221.8 7.5 156 653-818 15-213 (223)
299 PRK15093 antimicrobial peptide 99.9 4.8E-25 1E-29 255.9 17.2 181 640-829 3-249 (330)
300 cd03232 ABC_PDR_domain2 The pl 99.9 4E-25 8.7E-30 237.2 14.7 148 640-821 3-192 (192)
301 COG4559 ABC-type hemin transpo 99.9 9.2E-25 2E-29 221.5 16.1 180 641-829 2-231 (259)
302 COG4615 PvdE ABC-type sideroph 99.9 4.5E-22 9.8E-27 217.9 37.8 313 973-1302 63-381 (546)
303 cd03228 ABCC_MRP_Like The MRP 99.9 7.2E-25 1.6E-29 230.8 15.1 134 641-816 1-171 (171)
304 COG1131 CcmA ABC-type multidru 99.9 1.1E-24 2.3E-29 247.6 17.1 178 640-828 4-226 (293)
305 TIGR02323 CP_lyasePhnK phospho 99.9 1.7E-24 3.7E-29 243.5 17.7 185 640-828 3-238 (253)
306 COG1137 YhbG ABC-type (unclass 99.9 1.6E-25 3.5E-30 224.9 8.3 185 640-830 4-230 (243)
307 cd03230 ABC_DR_subfamily_A Thi 99.9 1.1E-24 2.4E-29 229.8 14.8 136 641-817 1-173 (173)
308 cd03233 ABC_PDR_domain1 The pl 99.9 2.1E-24 4.5E-29 233.5 16.8 155 640-821 3-202 (202)
309 PRK13546 teichoic acids export 99.9 7.9E-24 1.7E-28 237.6 21.4 185 640-836 4-240 (264)
310 cd03297 ABC_ModC_molybdenum_tr 99.9 1.5E-24 3.2E-29 237.5 15.1 162 645-821 5-214 (214)
311 COG1123 ATPase components of v 99.9 3E-24 6.6E-29 252.3 18.5 183 637-829 277-520 (539)
312 PRK15439 autoinducer 2 ABC tra 99.9 3.2E-24 7E-29 264.7 19.3 177 639-828 10-229 (510)
313 cd03229 ABC_Class3 This class 99.9 2.3E-24 5.1E-29 228.5 15.3 137 641-816 1-178 (178)
314 PRK13545 tagH teichoic acids e 99.9 9.2E-24 2E-28 249.3 21.6 185 639-835 20-239 (549)
315 COG4555 NatA ABC-type Na+ tran 99.9 7.7E-25 1.7E-29 220.4 10.5 178 641-829 2-223 (245)
316 PRK10261 glutathione transport 99.9 4.7E-24 1E-28 268.5 19.3 181 639-829 312-554 (623)
317 cd03215 ABC_Carb_Monos_II This 99.9 3.1E-24 6.7E-29 228.4 15.0 137 640-817 4-182 (182)
318 CHL00131 ycf16 sulfate ABC tra 99.9 1E-23 2.2E-28 237.1 19.5 175 640-825 7-238 (252)
319 COG0411 LivG ABC-type branched 99.9 3.5E-24 7.6E-29 224.6 13.2 185 640-831 4-242 (250)
320 TIGR03608 L_ocin_972_ABC putat 99.9 3E-24 6.4E-29 233.9 13.2 158 643-812 1-206 (206)
321 COG4604 CeuD ABC-type enteroch 99.9 9.2E-25 2E-29 218.6 8.2 176 641-829 2-226 (252)
322 PRK03695 vitamin B12-transport 99.9 1.3E-23 2.7E-28 235.1 17.8 169 642-828 2-222 (248)
323 cd03217 ABC_FeS_Assembly ABC-t 99.9 8.9E-24 1.9E-28 228.4 15.9 147 641-823 1-189 (200)
324 COG4525 TauB ABC-type taurine 99.9 9.8E-24 2.1E-28 210.7 14.7 172 641-824 4-220 (259)
325 COG4148 ModC ABC-type molybdat 99.9 4E-24 8.6E-29 225.1 12.5 161 659-830 16-220 (352)
326 PRK10762 D-ribose transporter 99.9 5.8E-24 1.3E-28 262.4 16.2 180 640-827 4-229 (501)
327 PRK09580 sufC cysteine desulfu 99.9 2.3E-23 5E-28 233.8 19.6 178 641-826 2-233 (248)
328 TIGR00955 3a01204 The Eye Pigm 99.9 8.2E-24 1.8E-28 266.0 17.7 174 654-828 38-256 (617)
329 TIGR01184 ntrCD nitrate transp 99.9 6E-24 1.3E-28 235.0 14.5 158 657-826 1-202 (230)
330 COG0444 DppD ABC-type dipeptid 99.9 7E-24 1.5E-28 232.4 14.7 191 641-839 2-256 (316)
331 TIGR02770 nickel_nikD nickel i 99.9 1.2E-23 2.7E-28 232.8 16.2 165 656-829 1-216 (230)
332 PRK13543 cytochrome c biogenes 99.9 2.5E-23 5.4E-28 227.5 18.3 163 639-814 10-212 (214)
333 PRK15177 Vi polysaccharide exp 99.9 1.1E-23 2.5E-28 229.5 14.9 166 656-831 2-195 (213)
334 PRK13540 cytochrome c biogenes 99.9 1.8E-23 3.8E-28 226.3 15.8 159 641-811 2-198 (200)
335 TIGR03269 met_CoM_red_A2 methy 99.9 2.3E-23 5E-28 258.5 18.7 184 639-828 278-517 (520)
336 cd03231 ABC_CcmA_heme_exporter 99.9 2.8E-23 6.1E-28 224.8 17.0 160 641-812 1-198 (201)
337 PLN03211 ABC transporter G-25; 99.9 1.7E-23 3.7E-28 262.4 17.5 171 654-828 81-296 (659)
338 cd03267 ABC_NatA_like Similar 99.9 1.3E-23 2.8E-28 233.3 14.2 160 655-821 35-236 (236)
339 PRK10982 galactose/methyl gala 99.9 2.3E-23 5E-28 256.6 17.5 177 643-827 1-222 (491)
340 COG4608 AppF ABC-type oligopep 99.9 2E-23 4.4E-28 224.2 14.5 172 640-839 4-212 (268)
341 PRK15134 microcin C ABC transp 99.9 1.9E-23 4.2E-28 259.5 16.6 178 639-828 274-515 (529)
342 cd03214 ABC_Iron-Siderophores_ 99.9 2.3E-23 5E-28 221.3 13.9 153 642-821 1-180 (180)
343 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 2.2E-23 4.7E-28 229.4 13.8 168 641-821 23-224 (224)
344 COG4161 ArtP ABC-type arginine 99.9 1.3E-23 2.9E-28 202.7 10.5 176 640-827 2-229 (242)
345 PRK13539 cytochrome c biogenes 99.9 7.1E-23 1.5E-27 222.7 17.4 160 641-814 3-200 (207)
346 cd03237 ABC_RNaseL_inhibitor_d 99.9 5E-23 1.1E-27 228.8 16.4 168 648-827 1-206 (246)
347 TIGR02324 CP_lyasePhnL phospho 99.9 3.2E-23 7E-28 228.8 14.6 162 641-812 2-222 (224)
348 PRK15064 ABC transporter ATP-b 99.9 8E-23 1.7E-27 254.0 19.7 177 639-829 318-526 (530)
349 COG4172 ABC-type uncharacteriz 99.9 7.6E-23 1.7E-27 225.0 16.8 182 638-830 274-518 (534)
350 PRK13538 cytochrome c biogenes 99.9 6.4E-23 1.4E-27 222.7 16.1 160 641-812 2-202 (204)
351 KOG0064 Peroxisomal long-chain 99.9 4E-19 8.6E-24 201.1 46.8 417 392-812 182-681 (728)
352 PRK13541 cytochrome c biogenes 99.9 8.7E-23 1.9E-27 220.0 16.7 156 641-810 2-193 (195)
353 COG4598 HisP ABC-type histidin 99.9 1.9E-23 4.1E-28 205.5 10.3 180 639-830 5-243 (256)
354 cd03216 ABC_Carb_Monos_I This 99.9 8.3E-23 1.8E-27 213.0 14.5 123 641-819 1-162 (163)
355 PRK13549 xylose transporter AT 99.9 8.4E-23 1.8E-27 252.4 16.8 180 639-826 258-492 (506)
356 TIGR01189 ccmA heme ABC export 99.9 1.1E-22 2.5E-27 219.7 15.5 157 641-810 1-196 (198)
357 TIGR03771 anch_rpt_ABC anchore 99.9 1.1E-22 2.3E-27 224.0 15.4 155 662-829 1-202 (223)
358 PRK10535 macrolide transporter 99.9 1.1E-22 2.4E-27 256.9 17.1 177 640-827 4-231 (648)
359 TIGR01257 rim_protein retinal- 99.9 1.8E-22 3.8E-27 270.9 18.9 180 639-829 1936-2160(2272)
360 TIGR01166 cbiO cobalt transpor 99.9 1.9E-22 4.2E-27 216.5 13.8 139 653-802 4-189 (190)
361 PLN03073 ABC transporter F fam 99.9 6.3E-22 1.4E-26 249.5 20.4 176 639-826 507-712 (718)
362 COG4618 ArpD ABC-type protease 99.9 8.5E-20 1.9E-24 207.5 35.4 313 969-1302 74-394 (580)
363 TIGR00956 3a01205 Pleiotropic 99.9 4.8E-22 1E-26 268.1 20.2 178 640-825 759-990 (1394)
364 PRK09700 D-allose transporter 99.9 4.9E-22 1.1E-26 246.1 18.1 180 639-823 264-493 (510)
365 PRK10636 putative ABC transpor 99.9 7.5E-22 1.6E-26 248.6 19.3 176 638-827 310-516 (638)
366 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 6E-22 1.3E-26 201.8 14.6 118 641-816 1-144 (144)
367 PRK11819 putative ABC transpor 99.9 8.9E-22 1.9E-26 245.5 19.1 176 639-828 323-533 (556)
368 COG1129 MglA ABC-type sugar tr 99.9 1.2E-21 2.5E-26 229.2 18.7 175 639-822 7-228 (500)
369 PRK11288 araG L-arabinose tran 99.9 4.8E-22 1E-26 245.4 16.2 177 639-827 256-484 (501)
370 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 1.1E-21 2.4E-26 244.7 19.0 175 639-827 321-530 (552)
371 TIGR02633 xylG D-xylose ABC tr 99.9 3.4E-22 7.4E-27 247.0 14.3 180 639-825 256-489 (500)
372 PRK11147 ABC transporter ATPas 99.9 1.4E-21 3E-26 247.0 19.6 178 638-827 317-527 (635)
373 COG4167 SapF ABC-type antimicr 99.9 4.1E-22 8.9E-27 196.6 11.4 180 641-830 5-241 (267)
374 PRK13409 putative ATPase RIL; 99.9 8.9E-22 1.9E-26 244.1 17.1 170 639-823 339-537 (590)
375 PRK10762 D-ribose transporter 99.9 1.2E-21 2.6E-26 241.9 17.5 174 639-826 256-482 (501)
376 COG1134 TagH ABC-type polysacc 99.9 2.1E-21 4.5E-26 204.2 16.5 162 655-828 41-236 (249)
377 TIGR01187 potA spermidine/putr 99.9 8.7E-22 1.9E-26 228.2 13.5 146 672-829 1-191 (325)
378 PRK15439 autoinducer 2 ABC tra 99.9 1.2E-21 2.6E-26 242.0 14.2 175 639-827 267-491 (510)
379 cd03236 ABC_RNaseL_inhibitor_d 99.9 1.3E-21 2.7E-26 218.4 11.8 165 644-821 4-220 (255)
380 COG4136 ABC-type uncharacteriz 99.9 3.4E-21 7.4E-26 184.2 12.8 159 641-812 3-207 (213)
381 PRK10938 putative molybdenum t 99.9 2.3E-21 5.1E-26 239.0 14.6 171 639-820 259-484 (490)
382 cd03222 ABC_RNaseL_inhibitor T 99.8 4.1E-21 8.8E-26 201.1 11.8 121 644-818 4-151 (177)
383 COG1119 ModF ABC-type molybden 99.8 4E-21 8.6E-26 201.6 10.9 177 637-822 28-256 (257)
384 PRK10982 galactose/methyl gala 99.8 1.2E-20 2.7E-25 232.5 15.9 177 639-825 249-477 (491)
385 COG3845 ABC-type uncharacteriz 99.8 3.1E-20 6.7E-25 212.1 17.1 171 639-822 3-223 (501)
386 COG1101 PhnK ABC-type uncharac 99.8 1.5E-20 3.2E-25 191.5 12.8 164 654-820 19-230 (263)
387 PLN03140 ABC transporter G fam 99.8 4.7E-20 1E-24 247.7 19.7 178 640-825 867-1107(1470)
388 cd03238 ABC_UvrA The excision 99.8 3.1E-20 6.8E-25 194.2 13.3 124 654-816 8-165 (176)
389 cd00267 ABC_ATPase ABC (ATP-bi 99.8 1.6E-19 3.4E-24 187.6 13.8 118 643-816 2-157 (157)
390 COG4152 ABC-type uncharacteriz 99.8 1E-19 2.2E-24 188.8 11.7 181 640-829 2-220 (300)
391 COG4674 Uncharacterized ABC-ty 99.8 4.8E-20 1.1E-24 184.7 8.7 178 639-829 4-236 (249)
392 PF00664 ABC_membrane: ABC tra 99.8 3.1E-17 6.7E-22 185.6 32.6 264 928-1193 7-274 (275)
393 PRK13409 putative ATPase RIL; 99.8 8.9E-20 1.9E-24 226.3 12.4 158 644-815 77-287 (590)
394 COG0488 Uup ATPase components 99.8 1.1E-18 2.3E-23 210.5 20.0 180 637-828 318-525 (530)
395 COG4172 ABC-type uncharacteriz 99.8 4.2E-19 9.2E-24 195.7 14.5 183 639-830 5-249 (534)
396 PF00664 ABC_membrane: ABC tra 99.8 2.7E-16 5.9E-21 177.9 37.8 268 330-597 2-275 (275)
397 PF00005 ABC_tran: ABC transpo 99.8 5.6E-20 1.2E-24 186.5 6.3 111 657-781 1-125 (137)
398 COG0396 sufC Cysteine desulfur 99.8 2.1E-18 4.5E-23 178.9 14.8 179 640-828 3-233 (251)
399 COG4107 PhnK ABC-type phosphon 99.8 1.9E-18 4.1E-23 169.4 11.6 183 639-829 5-242 (258)
400 KOG0061 Transporter, ABC super 99.7 7.9E-18 1.7E-22 209.3 15.4 181 640-828 25-260 (613)
401 COG4133 CcmA ABC-type transpor 99.7 2.9E-18 6.3E-23 172.2 8.8 153 641-805 3-195 (209)
402 cd03270 ABC_UvrA_I The excisio 99.7 7.2E-18 1.6E-22 185.5 12.9 159 653-821 7-226 (226)
403 COG4178 ABC-type uncharacteriz 99.7 6.8E-15 1.5E-19 176.0 35.5 360 935-1302 58-451 (604)
404 cd03271 ABC_UvrA_II The excisi 99.7 2.6E-17 5.7E-22 182.5 12.7 159 655-823 9-261 (261)
405 KOG0065 Pleiotropic drug resis 99.7 5.2E-16 1.1E-20 195.2 25.5 172 655-828 129-351 (1391)
406 COG4586 ABC-type uncharacteriz 99.7 9.8E-18 2.1E-22 177.1 8.0 168 655-831 38-249 (325)
407 cd03278 ABC_SMC_barmotin Barmo 99.7 1.1E-16 2.4E-21 171.9 10.3 131 658-813 14-189 (197)
408 KOG0927 Predicted transporter 99.6 3.7E-16 7.9E-21 179.3 7.5 177 638-824 387-592 (614)
409 COG4778 PhnL ABC-type phosphon 99.6 5.6E-16 1.2E-20 151.9 6.6 166 640-813 4-226 (235)
410 KOG0059 Lipid exporter ABCA1 a 99.6 2E-15 4.4E-20 196.2 12.7 184 639-829 563-788 (885)
411 cd03279 ABC_sbcCD SbcCD and ot 99.6 4.6E-15 1E-19 162.1 10.5 158 640-817 5-211 (213)
412 cd03272 ABC_SMC3_euk Eukaryoti 99.6 5.8E-15 1.3E-19 165.2 10.8 165 641-813 4-234 (243)
413 KOG0060 Long-chain acyl-CoA tr 99.6 1.1E-12 2.4E-17 152.1 28.2 200 1102-1302 270-493 (659)
414 PRK00349 uvrA excinuclease ABC 99.6 2E-14 4.3E-19 184.2 15.2 73 758-830 824-929 (943)
415 PRK00635 excinuclease ABC subu 99.5 8.3E-14 1.8E-18 185.3 16.5 72 758-829 803-907 (1809)
416 cd03273 ABC_SMC2_euk Eukaryoti 99.5 3.7E-14 8E-19 159.2 10.6 150 667-816 25-247 (251)
417 cd03240 ABC_Rad50 The catalyti 99.5 4.7E-14 1E-18 152.5 10.8 132 659-814 15-197 (204)
418 PRK14257 phosphate ABC transpo 99.5 3.6E-14 7.7E-19 164.4 10.3 68 1235-1302 73-145 (329)
419 COG4138 BtuD ABC-type cobalami 99.5 5.3E-15 1.1E-19 145.8 1.9 171 641-829 4-222 (248)
420 cd03275 ABC_SMC1_euk Eukaryoti 99.5 6.6E-14 1.4E-18 156.6 8.0 150 663-813 19-232 (247)
421 TIGR00630 uvra excinuclease AB 99.5 4.6E-13 1E-17 171.4 16.5 69 758-826 822-923 (924)
422 KOG0927 Predicted transporter 99.5 5.9E-13 1.3E-17 153.3 15.1 185 638-828 73-309 (614)
423 KOG0066 eIF2-interacting prote 99.4 4.3E-13 9.4E-18 148.7 12.4 176 638-825 584-788 (807)
424 COG3845 ABC-type uncharacteriz 99.4 8E-13 1.7E-17 151.9 14.7 184 635-825 252-489 (501)
425 COG1245 Predicted ATPase, RNas 99.4 6.5E-13 1.4E-17 149.5 13.0 156 645-813 340-530 (591)
426 cd03274 ABC_SMC4_euk Eukaryoti 99.4 2.2E-14 4.8E-19 155.8 1.3 161 640-813 5-203 (212)
427 COG3638 ABC-type phosphate/pho 99.4 1.6E-13 3.5E-18 143.4 7.2 60 1242-1302 3-62 (258)
428 COG1129 MglA ABC-type sugar tr 99.4 1.3E-12 2.9E-17 153.7 15.4 178 638-825 261-487 (500)
429 KOG2355 Predicted ABC-type tra 99.4 2.7E-12 5.8E-17 130.1 14.8 175 638-827 11-236 (291)
430 KOG0062 ATPase component of AB 99.4 3.9E-13 8.4E-18 153.9 9.1 173 637-819 359-559 (582)
431 COG2884 FtsE Predicted ATPase 99.4 1.7E-13 3.6E-18 138.0 5.0 59 1243-1302 2-60 (223)
432 COG0178 UvrA Excinuclease ATPa 99.4 5.1E-12 1.1E-16 151.8 17.1 74 757-830 815-921 (935)
433 COG1126 GlnQ ABC-type polar am 99.4 6E-13 1.3E-17 137.4 7.3 59 1242-1302 2-60 (240)
434 cd03289 ABCC_CFTR2 The CFTR su 99.4 1.2E-12 2.5E-17 148.0 8.4 61 1241-1302 1-61 (275)
435 cd03369 ABCC_NFT1 Domain 2 of 99.3 1.7E-12 3.6E-17 141.6 9.1 66 1237-1302 1-66 (207)
436 KOG0065 Pleiotropic drug resis 99.3 1.5E-12 3.2E-17 164.7 9.7 162 655-826 805-1019(1391)
437 COG1125 OpuBA ABC-type proline 99.3 1.2E-12 2.7E-17 137.6 6.1 58 1243-1302 2-59 (309)
438 cd01128 rho_factor Transcripti 99.3 5.8E-12 1.3E-16 139.0 11.7 167 662-837 11-226 (249)
439 COG1116 TauB ABC-type nitrate/ 99.3 2E-12 4.3E-17 138.0 7.3 59 1242-1302 3-61 (248)
440 COG1121 ZnuC ABC-type Mn/Zn tr 99.3 2.3E-12 5E-17 139.6 7.5 59 1242-1302 4-62 (254)
441 cd03239 ABC_SMC_head The struc 99.3 3.8E-12 8.3E-17 134.3 8.7 127 659-814 14-172 (178)
442 cd03276 ABC_SMC6_euk Eukaryoti 99.3 1.9E-11 4.1E-16 131.5 12.9 138 657-816 12-192 (198)
443 KOG0062 ATPase component of AB 99.3 2.8E-12 6E-17 147.0 5.9 177 638-829 78-286 (582)
444 COG1120 FepC ABC-type cobalami 99.3 5.7E-12 1.2E-16 137.4 7.7 59 1242-1302 2-60 (258)
445 COG1136 SalX ABC-type antimicr 99.3 6.8E-12 1.5E-16 134.1 7.7 60 1243-1302 2-63 (226)
446 TIGR00960 3a0501s02 Type II (G 99.3 6.6E-12 1.4E-16 137.9 7.8 60 1243-1302 2-61 (216)
447 COG1124 DppF ABC-type dipeptid 99.3 6.9E-12 1.5E-16 132.5 7.5 61 1242-1302 3-65 (252)
448 PRK13631 cbiO cobalt transport 99.3 1E-11 2.2E-16 143.6 9.4 62 1241-1302 20-84 (320)
449 cd03263 ABC_subfamily_A The AB 99.3 6.6E-12 1.4E-16 138.3 7.4 60 1243-1302 1-60 (220)
450 cd03244 ABCC_MRP_domain2 Domai 99.3 1E-11 2.2E-16 136.9 8.4 62 1241-1302 1-62 (221)
451 cd03247 ABCC_cytochrome_bd The 99.3 9.3E-12 2E-16 132.2 7.8 60 1243-1302 1-60 (178)
452 COG1135 AbcC ABC-type metal io 99.2 9E-12 2E-16 135.4 7.3 60 1243-1302 2-64 (339)
453 cd03216 ABC_Carb_Monos_I This 99.2 8.7E-12 1.9E-16 130.2 7.0 58 1243-1302 1-58 (163)
454 cd03223 ABCD_peroxisomal_ALDP 99.2 1E-11 2.2E-16 130.1 7.5 59 1243-1302 1-59 (166)
455 COG1127 Ttg2A ABC-type transpo 99.2 9.9E-12 2.1E-16 130.5 6.7 60 1241-1302 7-66 (263)
456 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.2 1.1E-11 2.3E-16 136.4 7.1 60 1243-1302 1-62 (218)
457 PRK13646 cbiO cobalt transport 99.2 1.5E-11 3.3E-16 140.6 8.3 61 1242-1302 2-65 (286)
458 cd03288 ABCC_SUR2 The SUR doma 99.2 1.7E-11 3.7E-16 138.2 8.5 64 1239-1302 16-79 (257)
459 cd03246 ABCC_Protease_Secretio 99.2 1.7E-11 3.7E-16 129.4 7.8 60 1243-1302 1-60 (173)
460 cd03292 ABC_FtsE_transporter F 99.2 1.5E-11 3.3E-16 134.8 7.4 59 1243-1302 1-59 (214)
461 PRK13643 cbiO cobalt transport 99.2 1.8E-11 4E-16 140.0 8.3 60 1243-1302 2-64 (288)
462 PRK11629 lolD lipoprotein tran 99.2 1.7E-11 3.7E-16 136.2 7.6 61 1242-1302 5-67 (233)
463 cd03250 ABCC_MRP_domain1 Domai 99.2 1.9E-11 4.1E-16 132.9 7.5 60 1243-1302 1-63 (204)
464 TIGR02673 FtsE cell division A 99.2 2.1E-11 4.5E-16 133.8 7.9 59 1243-1302 2-60 (214)
465 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.2 1.9E-11 4.2E-16 124.6 7.1 58 1243-1302 1-58 (144)
466 cd03257 ABC_NikE_OppD_transpor 99.2 2.1E-11 4.5E-16 135.2 7.8 60 1243-1302 2-63 (228)
467 cd03266 ABC_NatA_sodium_export 99.2 2.3E-11 5E-16 133.8 7.9 60 1243-1302 2-63 (218)
468 COG1122 CbiO ABC-type cobalt t 99.2 2.4E-11 5.3E-16 132.6 7.9 60 1242-1302 3-62 (235)
469 cd03233 ABC_PDR_domain1 The pl 99.2 2.1E-11 4.5E-16 132.2 7.2 61 1242-1302 3-68 (202)
470 PRK13650 cbiO cobalt transport 99.2 2.5E-11 5.5E-16 138.3 8.0 61 1242-1302 4-65 (279)
471 PRK13637 cbiO cobalt transport 99.2 2.6E-11 5.6E-16 138.8 8.0 60 1243-1302 3-65 (287)
472 cd03245 ABCC_bacteriocin_expor 99.2 3.3E-11 7.1E-16 132.8 8.5 62 1241-1302 1-62 (220)
473 cd03252 ABCC_Hemolysin The ABC 99.2 2.6E-11 5.5E-16 135.2 7.7 60 1243-1302 1-60 (237)
474 PRK13540 cytochrome c biogenes 99.2 2.7E-11 5.8E-16 131.2 7.6 58 1243-1302 2-59 (200)
475 PRK13647 cbiO cobalt transport 99.2 2.7E-11 5.8E-16 137.7 7.9 60 1242-1302 4-63 (274)
476 TIGR02314 ABC_MetN D-methionin 99.2 2.6E-11 5.6E-16 140.9 7.9 60 1243-1302 2-63 (343)
477 TIGR02211 LolD_lipo_ex lipopro 99.2 2.8E-11 6E-16 133.4 7.6 60 1243-1302 2-63 (221)
478 cd03293 ABC_NrtD_SsuB_transpor 99.2 2.3E-11 5.1E-16 133.9 6.9 60 1243-1302 1-62 (220)
479 PRK13651 cobalt transporter AT 99.2 3.3E-11 7.2E-16 138.5 8.4 61 1242-1302 2-65 (305)
480 PRK10584 putative ABC transpor 99.2 3.3E-11 7.1E-16 133.6 8.1 61 1242-1302 6-68 (228)
481 PRK10908 cell division protein 99.2 3.1E-11 6.6E-16 133.2 7.8 59 1243-1302 2-60 (222)
482 PRK13645 cbiO cobalt transport 99.2 3.7E-11 8E-16 137.9 8.7 63 1240-1302 4-69 (289)
483 PRK00635 excinuclease ABC subu 99.2 1E-10 2.2E-15 156.5 14.0 80 750-830 1686-1798(1809)
484 PRK13539 cytochrome c biogenes 99.2 3E-11 6.5E-16 131.5 7.6 58 1243-1302 3-60 (207)
485 PRK13632 cbiO cobalt transport 99.2 3.2E-11 6.9E-16 137.0 8.0 61 1242-1302 7-67 (271)
486 COG3839 MalK ABC-type sugar tr 99.2 3E-11 6.5E-16 136.9 7.7 59 1242-1302 3-61 (338)
487 COG1134 TagH ABC-type polysacc 99.2 2.7E-11 5.8E-16 128.4 6.7 45 1258-1302 41-85 (249)
488 COG1245 Predicted ATPase, RNas 99.2 4.1E-11 8.9E-16 135.2 8.5 154 645-812 79-286 (591)
489 cd00820 PEPCK_HprK Phosphoenol 99.2 3E-11 6.5E-16 113.9 6.3 63 655-725 3-77 (107)
490 TIGR02769 nickel_nikE nickel i 99.2 3.1E-11 6.8E-16 136.7 7.7 60 1243-1302 3-69 (265)
491 TIGR02315 ABC_phnC phosphonate 99.2 3.1E-11 6.7E-16 135.1 7.6 59 1243-1302 2-60 (243)
492 cd03225 ABC_cobalt_CbiO_domain 99.2 2.5E-11 5.5E-16 132.7 6.7 59 1244-1302 1-59 (211)
493 COG4181 Predicted ABC-type tra 99.2 1.9E-11 4.1E-16 120.8 5.0 61 1242-1302 6-68 (228)
494 PRK11247 ssuB aliphatic sulfon 99.2 3.9E-11 8.5E-16 134.6 8.2 59 1242-1302 12-70 (257)
495 cd03258 ABC_MetN_methionine_tr 99.2 3.1E-11 6.8E-16 134.2 7.3 60 1243-1302 2-63 (233)
496 cd03230 ABC_DR_subfamily_A Thi 99.2 3.3E-11 7.1E-16 127.3 7.1 58 1243-1302 1-58 (173)
497 PRK13648 cbiO cobalt transport 99.2 3.9E-11 8.4E-16 136.2 8.1 61 1242-1302 7-67 (269)
498 cd03213 ABCG_EPDR ABCG transpo 99.2 4.3E-11 9.3E-16 128.8 8.0 61 1242-1302 3-69 (194)
499 cd03254 ABCC_Glucan_exporter_l 99.2 4.5E-11 9.8E-16 132.5 8.4 61 1241-1302 1-61 (229)
500 PRK11248 tauB taurine transpor 99.2 3.8E-11 8.2E-16 135.0 7.8 58 1243-1302 2-59 (255)
No 1
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1e-184 Score=1741.36 Aligned_cols=1040 Identities=48% Similarity=0.795 Sum_probs=940.7
Q ss_pred CCCCccCCh--hhHHHHHchHHHHHhhhcCCCCCCCCCCCCccCcHHHHHHHHHHHHHHhhccC--CchHHHHHHHHHhH
Q 000746 252 VCPERNASI--LSRTSFGWMTPLLQLGYKKPITEKDVWKLDTWDQTEILIEKFHRCWIEESQRS--KPWLLRALNNSFGG 327 (1303)
Q Consensus 252 ~~pe~~a~~--~s~~~f~Wl~~l~~~g~~~~L~~~dl~~l~~~~~s~~l~~~~~~~w~~~~~~~--~~~l~~~l~~~~~~ 327 (1303)
++|.+.++. +|+++|||++|++++|||++|+.+|+|+++++|+++.+.++|++.|+++.+++ +|+++++++++|++
T Consensus 122 ~~~~~~~~~~~~S~~~f~W~~~l~~~g~k~~L~~~Dl~~l~~~d~s~~l~~~~~~~w~~~~~~~~~~psl~~al~~~f~~ 201 (1381)
T KOG0054|consen 122 PNPLPEASAGFLSRLTFSWMTPLLRKGYKKPLELKDLWSLSPEDSSETLVKRLESLWEKELGRSGKKPSLLRALLRTFGR 201 (1381)
T ss_pred CCcccccchhHHHHHHHHHHHHHHHhhccCCCChhhcccCChhhhhhHHHHHHHHHHHHHhccccCCcHHHHHHHHHHHH
Confidence 445555555 99999999999999999999999999999999999999999999999986544 78999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 328 RFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRG-DPAWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFRLRSTLVAAI 406 (1303)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~L~~~i 406 (1303)
.++..+++.++.+...+++|.+++.++++++++ .+.+.||.++++++++.++.+++.++|++..++.++|+|.++..+|
T Consensus 202 ~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~~I 281 (1381)
T KOG0054|consen 202 TFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKRLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALISAI 281 (1381)
T ss_pred HHHHHHHHHHHHHHHccccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHH
Confidence 999999999999999999999999999999876 4557789999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 407 FRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQLHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLVLMVPLQTFI 486 (1303)
Q Consensus 407 ~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~~~~~~~~~~~~ 486 (1303)
|+|.|+++...+.+.+.|+++|+|++|+++++++..++|.+|.+|+|++++++++|..+|+++++|++++++++|++.++
T Consensus 282 Y~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n~~~ 361 (1381)
T KOG0054|consen 282 YRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLNSFL 361 (1381)
T ss_pred HHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHh
Q 000746 487 ISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIPVVVTVV 566 (1303)
Q Consensus 487 ~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (1303)
+++++++|++.|+.+|+|++.++|+|+|||+||+|+||+.|.+++++.|++|++..++..+..++..+.+...|.+++++
T Consensus 362 a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv~~~ 441 (1381)
T KOG0054|consen 362 AKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLVSVV 441 (1381)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhh-hhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC--CCCCCCCcEEE
Q 000746 567 SFGTFT-LLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPNP--PLEPELPAVSI 643 (1303)
Q Consensus 567 ~f~~~~-~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~--~~~~~~~~i~~ 643 (1303)
+|++|+ ..++.+++..+|+++++|+.++.|+..+|..+..+.++.+|++|+++|+..+|....... +..+....+++
T Consensus 442 tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~i~i 521 (1381)
T KOG0054|consen 442 TFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENAIEI 521 (1381)
T ss_pred HHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCCCCceEEE
Confidence 999999 667889999999999999999999999999999999999999999999998875433222 33345567999
Q ss_pred EeeEEEeCCC--CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcCeEEEEccCcccccccHHH
Q 000746 644 KNGNFSWDSK--SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWIFNATLRK 721 (1303)
Q Consensus 644 ~~~~f~~~~~--~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~~iayv~Q~p~l~~~Tire 721 (1303)
+|++|+|+++ .+.|+||||+|++|+++||||++||||||||++|+||+++.+| .+.+++.+|||||+||||||||||
T Consensus 522 ~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG-~v~v~gsiaYv~Q~pWI~ngTvre 600 (1381)
T KOG0054|consen 522 KNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSG-SVAVNGSVAYVPQQPWIQNGTVRE 600 (1381)
T ss_pred eeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccc-eEEEcCeEEEeccccHhhCCcHHH
Confidence 9999999863 3699999999999999999999999999999999999999997 788999999999999999999999
Q ss_pred HHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHH-----------------------
Q 000746 722 NILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA----------------------- 778 (1303)
Q Consensus 722 NI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARA----------------------- 778 (1303)
||+||+|||+++|++|+++|+|++|++.||+||+|+|||+|.||||||||||+||||
T Consensus 601 NILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~ 680 (1381)
T KOG0054|consen 601 NILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGK 680 (1381)
T ss_pred hhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhH
Confidence 999999999999999999999999999999999999999999999999999999999
Q ss_pred -HHHHHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchHHHHHHHHhccchhhhhhhhcccccc
Q 000746 779 -VFNSCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLMENAGKMEEMEEREEKDDSIN 857 (1303)
Q Consensus 779 -l~~~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 857 (1303)
+|++|+++.+++||+|+|||++++++.||+|++|+||+|.++|+|+|+++.++.+.++..+.....+.+ .+.+ ..+
T Consensus 681 ~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~~~~l~~~~~~~~~~~-~~~~--~~~ 757 (1381)
T KOG0054|consen 681 HIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKSGGDFAELAHEEESEQEEE-ASEK--DLE 757 (1381)
T ss_pred HHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhcchhHHHHhhccchhhccc-cccc--ccc
Confidence 567899899999999999999999999999999999999999999999999999888843322111110 0000 000
Q ss_pred cccccCcccccccccccCCCCCccccccccCCCcccchhhhhhcCccchhHHHHHHHHcCchHHHHHHHHHHHHHHHHHh
Q 000746 858 SNQEVSKPVANRAVQVNEFPKNESYTKKGKRGRSVLVKQEERETGIVSGSVLTRYKNALGGPWVIMILFACYLSTEVLRI 937 (1303)
Q Consensus 858 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~y~~~~g~~~~~~~~~~~~~~~~~~~~ 937 (1303)
.. ........+.....+ ...+..+..++...++.++|+++.|.|+|++|+.|+++.++++.+.+.+++.+..+++.+
T Consensus 758 ~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~ 834 (1381)
T KOG0054|consen 758 SG-ESSRESESRSLESLS--SEEEKSKDEKEEEDKLVQEEERETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQVLQI 834 (1381)
T ss_pred cc-ccccchhhhhhhhhc--ccccccccccchhhHHHHHHHHhcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 00 000000000000000 000000111111234566788899999999999999997777777777778888899999
Q ss_pred hhhHHHhhhcccccCCC---CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCc
Q 000746 938 SSSTWLSFWTDQSTSKN---YNPGFYIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPI 1014 (1303)
Q Consensus 938 ~~~~~l~~w~~~~~~~~---~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~ 1014 (1303)
+.++|+++|+++..... .+..+|+++|.+++++..++.+++++++..++.+++++||++|+++++|+||+|||+||+
T Consensus 835 ~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~ 914 (1381)
T KOG0054|consen 835 ASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPT 914 (1381)
T ss_pred HHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCc
Confidence 99999999998764333 467889999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 000746 1015 GRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQSTAREVKRLDSITRS 1094 (1303)
Q Consensus 1015 G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~~~~pl~~~~~~i~~~~~~~~r~l~r~~~~~~s 1094 (1303)
|||+||||+|++.+|..+|..+..++..++.++++++++++++|+++++++|+.++++++++||.+++|+++|+++.++|
T Consensus 915 GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRS 994 (1381)
T KOG0054|consen 915 GRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRS 994 (1381)
T ss_pred cchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcccccc
Q 000746 1095 PVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMIWLIATFAVMQNGRAENQV 1174 (1303)
Q Consensus 1095 ~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~ 1174 (1303)
|+++||+|+++|+.|||||++|++|.+++.+++|.+.++.+....++||+++|+|++++++++.++.+++......
T Consensus 995 Pi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~---- 1070 (1381)
T KOG0054|consen 995 PIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLPSGL---- 1070 (1381)
T ss_pred hHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999988888765421
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCC
Q 000746 1175 AFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRP 1254 (1303)
Q Consensus 1175 ~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~ 1254 (1303)
..+|.+|++++|++++++.+++++|+.+++|+.|+|+|||.||.++|+|.|...+...||+.||.+|+|+|+|+++||+|
T Consensus 1071 ~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp 1150 (1381)
T KOG0054|consen 1071 ISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRP 1150 (1381)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCC
Confidence 23799999999999999999999999999999999999999999999986665555558899999999999999999999
Q ss_pred CCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1255 ELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1255 ~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
+.|+|||||||+|+||||||||||||||||||+++|+|+.||.+|+|.
T Consensus 1151 ~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~ 1198 (1381)
T KOG0054|consen 1151 NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEIL 1198 (1381)
T ss_pred CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEE
Confidence 999999999999999999999999999999999999999999999985
No 2
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.7e-164 Score=1653.50 Aligned_cols=1268 Identities=77% Similarity=1.213 Sum_probs=1012.9
Q ss_pred ccccccccccCCCCCCCCCccccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccchHHHHHHHH
Q 000746 27 MASGPLDWYCRPVANGTWAKTVDSTFGAYTTCAVDSLVISISHSVLLGLCIFRIWLMNKNSKARRYRLSSNCYNYMLGLL 106 (1303)
Q Consensus 27 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 106 (1303)
|+..+++++|++++.+.|++.++..|+|++|||+++++.++|++++++++++++|.+.+..+...+..+..+....+.++
T Consensus 1 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (1622)
T PLN03130 1 MGFEPLDWYCRPVPNGVWAKKVDNAFGAYTPCATDSLVINISHLVLLGLCLYRIWLIKKDHKVQRFCLRSKWYNYFLALL 80 (1622)
T ss_pred CcchhhhhhcCCCccCCCCcccccccCCCCccHHhhHHHHHHHHHHHHHHHHHHHHhccccccCCccccchHHHHHHHHH
Confidence 55667788999877556888777779999999999999999999999999999998854222222111111222223233
Q ss_pred HHHHhhHHHHHHHHHHhhccCCCCCC--CcchH-HHHHHHHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHHHHHHH
Q 000746 107 ACYCTAEPLLRLVMGISIFNLDGETS--FAPFE-MVSLIIEALAWCSMLIMICLETKFYIREFRWYVRFGVIYVLVGDAV 183 (1303)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (1303)
.+++....+...+..+.....+.... ..+.. ++..++..++++++..+.+.+|.++.+++.....+|++. .+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 157 (1622)
T PLN03130 81 AAYCTAEPLFRLVMGISVLNLDGQTSLPPFEIVSLIVEALTWCSMLVMIGVETKIYIREFRWYVRFAVIYVLV---GDAV 157 (1622)
T ss_pred HHHHHHHHHHHHHHHhhhhccccccccccchhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeehhHHHh---hHHH
Confidence 33333333322222111111121111 12222 444555555555555566666777766555332233222 1111
Q ss_pred HHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHccCCCCCCCcccCCcccccccccccCCCCCCCCCCccCChhhH
Q 000746 184 ILNLIIPMRDYYSRITLYLYISMVFCQALFGILILVYIPNLDPYPGYTIMQPEFVDNAEYEALPGGEHVCPERNASILSR 263 (1303)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~ 263 (1303)
.....+.....+.......++....+...+++++++.++...++..+.+...+...+.+|++.+.+++.+||+++|++||
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~ 237 (1622)
T PLN03130 158 MLNLVLSVKEYYSSFVLYLYISEVAAQVLFGILLLVYFPNLDPYPGYTPIGSESVDDYEYEELPGGEQICPERHANIFSR 237 (1622)
T ss_pred HHHHHHHHHHHHhccccceehhHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccccCCcccCCCCcccccCHHHH
Confidence 11111211111111000112222233333334443445544444444332212111224666666778899999999999
Q ss_pred HHHHchHHHHHhhhcCCCCCCCCCCCCccCcHHHHHHHHHHHHHHhhccCCchHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 000746 264 TSFGWMTPLLQLGYKKPITEKDVWKLDTWDQTEILIEKFHRCWIEESQRSKPWLLRALNNSFGGRFWLGGLFKIGNDLSQ 343 (1303)
Q Consensus 264 ~~f~Wl~~l~~~g~~~~L~~~dl~~l~~~~~s~~l~~~~~~~w~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 343 (1303)
++|||+||++++|||++|+.+|||+++++++++.+.++|++.|+++.++++|+++++++++|++.++.++++.++..++.
T Consensus 238 ~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~ 317 (1622)
T PLN03130 238 IFFGWMTPLMQLGYKRPLTEKDVWKLDTWDQTETLYRSFQKCWDEELKKPKPWLLRALNNSLGGRFWLGGFFKIGNDLSQ 317 (1622)
T ss_pred HHHHHHHHHHHHHhcCCCChhhccCCChhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987777899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCh
Q 000746 344 FVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFRLRSTLVAAIFRKTLRLTHEARKGFPS 423 (1303)
Q Consensus 344 ~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~L~~~i~~k~l~l~~~~~~~~~~ 423 (1303)
+++|++++.+++++.+++..+.++.++++++++.++..++.++|++...+++.++|..++..+|+|.++++....++.++
T Consensus 318 ~~~P~ll~~li~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~ 397 (1622)
T PLN03130 318 FVGPLLLNLLLESMQNGEPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTS 397 (1622)
T ss_pred HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCH
Confidence 99999999999999765544557766666666666666667778777789999999999999999999999988888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 424 GKVTNMITTDANALQQISQQLHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLVLMVPLQTFIISKMRKLTKEGLQWTDR 503 (1303)
Q Consensus 424 g~i~nl~s~Dv~~i~~~~~~~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (1303)
|+++|+|++|++++++....++.+|..|++++++++++|..+|++++++++++++++|++.++.+++++.+++.++.+|+
T Consensus 398 G~ivnl~s~Dv~~i~~~~~~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~ 477 (1622)
T PLN03130 398 GKITNLMTTDAEALQQICQQLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDK 477 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888999999999999999999999999999988888889999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHhhhhhhhhhCCCCCHHHH
Q 000746 504 RVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIPVVVTVVSFGTFTLLGGDLTPARA 583 (1303)
Q Consensus 504 r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~ 583 (1303)
|.+.++|+++||++||+||||+.+.+++++.|++|.+..++......+..++....+.++.+++|++|.+.++.++++.+
T Consensus 478 r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fg~~~~~~g~Lt~g~v 557 (1622)
T PLN03130 478 RIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLVTVVSFGVFTLLGGDLTPARA 557 (1622)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 99999999999999999999999999999999999999998888888777777777767778889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcEEEEeeEEEeCCC--CCccceee
Q 000746 584 FTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPNPPLEPELPAVSIKNGNFSWDSK--SPTLSNIN 661 (1303)
Q Consensus 584 f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~--~~~L~~i~ 661 (1303)
|+++++++.+..|+..+|..+..+.++++|++||++|++.++....+.++..+..+.|+++|++|+|+++ +++|+|+|
T Consensus 558 f~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~~vL~~in 637 (1622)
T PLN03130 558 FTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPNPPLEPGLPAISIKNGYFSWDSKAERPTLSNIN 637 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCcccCCCCceEEEeeEEEccCCCCCceeecee
Confidence 9999999999999999999999999999999999999986553221111112223469999999999753 47999999
Q ss_pred eEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcCeEEEEccCcccccccHHHHHccCCCCChhhHHHHHHHH
Q 000746 662 LDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVS 741 (1303)
Q Consensus 662 l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~~iayv~Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~ 741 (1303)
|+|++|++++|+||||||||||+++|+|+++|.+||.+.++++|+||||+||||++||||||+||+++|+++|++++++|
T Consensus 638 l~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~ 717 (1622)
T PLN03130 638 LDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVT 717 (1622)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHh
Confidence 99999999999999999999999999999999995577899999999999999999999999999999999999999999
Q ss_pred hhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH------------------------HHHHhHhcCCCEEEEEe
Q 000746 742 ALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF------------------------NSCIKEELRGKTRILVT 797 (1303)
Q Consensus 742 ~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~------------------------~~~i~~~~~~~Tvilvt 797 (1303)
+|++|++.||+||+|+|||+|.+|||||||||+||||++ ++++.+.++++|+|+||
T Consensus 718 ~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVT 797 (1622)
T PLN03130 718 ALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVT 797 (1622)
T ss_pred CcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEE
Confidence 999999999999999999999999999999999999953 45566667899999999
Q ss_pred cCCCcccccCEEEEEeCCEEEEecCHHHHHhcchHHHHHHHHhccchhhhhhhhcccccccccccCcccccccccccCCC
Q 000746 798 NQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLMENAGKMEEMEEREEKDDSINSNQEVSKPVANRAVQVNEFP 877 (1303)
Q Consensus 798 H~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (1303)
|+++.++.||+|++|++|+|+++|+|+|++++++.|.++.++.++.++..+++.. +.. .+....+...... +..+
T Consensus 798 H~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~--~~~~ 872 (1622)
T PLN03130 798 NQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKLMENAGKMEEYVEENGE-EED--DQTSSKPVANGNA--NNLK 872 (1622)
T ss_pred CCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhcchhHHHHHHhccccccccccccc-ccc--ccccccccccccc--cccc
Confidence 9999999999999999999999999999999889998887654322111110000 000 0000000000000 0000
Q ss_pred CCccccccccCCCcccchhhhhhcCccchhHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhhhHHHhhhcccccCCCCCc
Q 000746 878 KNESYTKKGKRGRSVLVKQEERETGIVSGSVLTRYKNALGGPWVIMILFACYLSTEVLRISSSTWLSFWTDQSTSKNYNP 957 (1303)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~ 957 (1303)
.......+.++.+..+.++|+++.|.+++++|++|+++.|+.+.++++++++++.+++.+++++|+++|++.........
T Consensus 873 ~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~ 952 (1622)
T PLN03130 873 KDSSSKKKSKEGKSVLIKQEERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHGP 952 (1622)
T ss_pred ccccccccccccchhhhhHHHHhcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCch
Confidence 00000001111112244567889999999999999999887766666666677778888899999999998644333345
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCcchhHHHhhccHHHHHHHHHHHHH
Q 000746 958 GFYIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVN 1037 (1303)
Q Consensus 958 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~ 1037 (1303)
.+|+++|++++++..++.+++.+++...+.++++++|++++++++++|++|||++|+|+|+|||++|++.+|+.++..+.
T Consensus 953 ~~~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~ 1032 (1622)
T PLN03130 953 LFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVN 1032 (1622)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888899999888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHhcChhhHhhcCcHH
Q 000746 1038 MFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYD 1117 (1303)
Q Consensus 1038 ~~~~~~~~~i~~~v~i~~~~~~~~~~~~pl~~~~~~i~~~~~~~~r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~ 1117 (1303)
.++..++.+++.++++++++++.+++++|++++++.++.+|.+++|++++.+.++++|+++++.|+++|++|||||++++
T Consensus 1033 ~~~~~~~~~i~~~i~i~~~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~ 1112 (1622)
T PLN03130 1033 MFLGQIFQLLSTFVLIGIVSTISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYD 1112 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHH
Confidence 99999999998888888888888888888888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHH
Q 000746 1118 RMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGV 1197 (1303)
Q Consensus 1118 ~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~ 1197 (1303)
+|.+.+.+..|.+.+..+.....++|++.++++++++++++++.+.+...+.......+.+.+|++++|+..+...+.++
T Consensus 1113 ~f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l 1192 (1622)
T PLN03130 1113 RMAEINGRSMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAV 1192 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998899999999999988887777666655543322222334678999999999999999999
Q ss_pred HHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEEC
Q 000746 1198 LRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVG 1277 (1303)
Q Consensus 1198 ~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVG 1277 (1303)
.+.+..+|+.++|+||+.+|++.|+|++...++..+++.||.+|+|+|+||+|+|+++.++|||||||+|+|||||||||
T Consensus 1193 ~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVG 1272 (1622)
T PLN03130 1193 LRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVG 1272 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEEC
Confidence 99999999999999999999999888654333344566899999999999999998877789999999999999999999
Q ss_pred CCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1278 RTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1278 rTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|||||||||+++|+|+|||++|+|+
T Consensus 1273 rSGSGKSTLl~lL~rl~~p~~G~I~ 1297 (1622)
T PLN03130 1273 RTGAGKSSMLNALFRIVELERGRIL 1297 (1622)
T ss_pred CCCCCHHHHHHHHhCcCCCCCceEE
Confidence 9999999999999999999999985
No 3
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.6e-160 Score=1616.40 Aligned_cols=1260 Identities=75% Similarity=1.212 Sum_probs=1000.5
Q ss_pred cccccCCCCCCCCCccccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccchHHHHHHHHHHHHh
Q 000746 32 LDWYCRPVANGTWAKTVDSTFGAYTTCAVDSLVISISHSVLLGLCIFRIWLMNKNSKARRYRLSSNCYNYMLGLLACYCT 111 (1303)
Q Consensus 32 ~~~~c~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (1303)
.+++|++++++.|++.++..|+|++|||+++++.++|++++++++++++|.+.++++...+..+..+....+.++.+++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (1495)
T PLN03232 6 LNWYCKPIAEGFWEKTVDGAFGAYTPCAIDSLVMIVSHSVLLGLCFYRIWIILDNAKAQIYVLRKKYYNCVLGILACYCV 85 (1495)
T ss_pred HHhhcCCccccCCCcccccccCCCCccHHhhHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchHHHHHHHHHHHHHH
Confidence 35699987645688776667999999999999999999999999999999885211111111111111122222222222
Q ss_pred hHHHHHHHHHHhhccCCCC--CCCcchH-HHHHHHHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHHHHHHHHHHHh
Q 000746 112 AEPLLRLVMGISIFNLDGE--TSFAPFE-MVSLIIEALAWCSMLIMICLETKFYIREFRWYVRFGVIYVLVGDAVILNLI 188 (1303)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (1303)
...+...+..+.....+.. ....+.. ++..++..++++++..+.+.||.++.+++.....+|++. .+.+.....
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 162 (1495)
T PLN03232 86 VEPVLRLVMGISLFDMDEETDLPPFEVASLMVEAFAWFSMLVLIGLETKQYVKEFRWYVRFGVVYVLV---ADAVLLDLV 162 (1495)
T ss_pred HHHHHHHHHHhhhhccccccccccchhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeehhHhh---hhHHHHHHH
Confidence 2222211111111111111 1122223 555566666666666666777888777665333333322 011111111
Q ss_pred hhccccccchhhHHHHHHHHHHHHHHHHHHHHccCCCCCCCcccCCcccccccccccCCCCCCCCCCccCChhhHHHHHc
Q 000746 189 IPMRDYYSRITLYLYISMVFCQALFGILILVYIPNLDPYPGYTIMQPEFVDNAEYEALPGGEHVCPERNASILSRTSFGW 268 (1303)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~~~f~W 268 (1303)
+.....+............++...+++++++.+|...+++.+.....+...+.+|+..|.+++.+||+++|+|||++|||
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~~~f~w 242 (1495)
T PLN03232 163 LPLKNSINRTALYLCISSRCCQALFGILLLVYIPELDPYPGYHILNNESLDNVEYDALRGGENICPERYASIFSRIYFSW 242 (1495)
T ss_pred HHHHHHHhccccceehhHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccCCCCccccCCHHHHHHHHH
Confidence 11111111100001112222222233333344554444433221111111112345555567789999999999999999
Q ss_pred hHHHHHhhhcCCCCCCCCCCCCccCcHHHHHHHHHHHHHHhhccCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 000746 269 MTPLLQLGYKKPITEKDVWKLDTWDQTEILIEKFHRCWIEESQRSKPWLLRALNNSFGGRFWLGGLFKIGNDLSQFVGPV 348 (1303)
Q Consensus 269 l~~l~~~g~~~~L~~~dl~~l~~~~~s~~l~~~~~~~w~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ 348 (1303)
+||++++|||++|+.+|||+++++++++.++++|++.|+++.++++|++++++++++++.++.+++++++.+++.+++|+
T Consensus 243 ~~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~P~ 322 (1495)
T PLN03232 243 MTPLMQLGYRKPITEKDVWQLDQWDQTETLIKRFQRCWTEESRRPKPWLLRALNNSLGGRFWLGGIFKIGHDLSQFVGPV 322 (1495)
T ss_pred HHHHHHHHhcCCCChhhccCCChhhhHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988776789999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCChHHHHH
Q 000746 349 LLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTN 428 (1303)
Q Consensus 349 ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~L~~~i~~k~l~l~~~~~~~~~~g~i~n 428 (1303)
+++.+++++.++++.+.++.++++++++.++..++.++|++...+.+.++|..++..+|+|.++++....++.++|+++|
T Consensus 323 ll~~li~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n 402 (1495)
T PLN03232 323 ILSHLLQSMQEGDPAWVGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTN 402 (1495)
T ss_pred HHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHH
Confidence 99999999976555556777777778888777788788888888999999999999999999999998888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 429 MITTDANALQQISQQLHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLVLMVPLQTFIISKMRKLTKEGLQWTDRRVSLT 508 (1303)
Q Consensus 429 l~s~Dv~~i~~~~~~~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 508 (1303)
+|++|++++++....++.+|..|++++++++++|..+|++++++++++++++|++.++.+++++.+++.++.+|+|.+.+
T Consensus 403 ~ls~Dv~~i~~~~~~l~~l~~~p~~ii~~~~~l~~~lg~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~ 482 (1495)
T PLN03232 403 MITTDANALQQIAEQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGII 482 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888899999999999999999999999999988888888889888999999999999999999999999
Q ss_pred HHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHhhhhhhhhhCCCCCHHHHHHHHH
Q 000746 509 NEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIPVVVTVVSFGTFTLLGGDLTPARAFTSLS 588 (1303)
Q Consensus 509 ~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~f~~l~ 588 (1303)
+|.++||++||+|+||+.+.+++++.|++|.+..++......+..++....+.++.+++||+|.+.++.++++.+|++++
T Consensus 483 ~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~~~v~~~~lt~g~vf~~l~ 562 (1495)
T PLN03232 483 NEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTLVSFGVFVLLGGDLTPARAFTSLS 562 (1495)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999998888877777666666666777788999998899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcEEEEeeEEEeCC--CCCccceeeeEecC
Q 000746 589 LFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPNPPLEPELPAVSIKNGNFSWDS--KSPTLSNINLDIPV 666 (1303)
Q Consensus 589 l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~f~~~~--~~~~L~~i~l~i~~ 666 (1303)
++..+..|+..+|..+..+.++.+|++||+++++.+++...+.++..+..+.|+++|++|+|++ ++++|+|+||+|++
T Consensus 563 l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~~~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~ 642 (1495)
T PLN03232 563 LFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQNPPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPV 642 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccCCcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcC
Confidence 9999999999999999999999999999999998665322111111122346999999999975 35799999999999
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcCeEEEEccCcccccccHHHHHccCCCCChhhHHHHHHHHhhHHH
Q 000746 667 GSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHD 746 (1303)
Q Consensus 667 G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~~iayv~Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~ 746 (1303)
||+++|+||||||||||+++|+|+++|.+|+...++++|+||||+||||++||||||+||+++|+++|++++++|+|++|
T Consensus 643 Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~d 722 (1495)
T PLN03232 643 GSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHD 722 (1495)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHH
Confidence 99999999999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH------------------------HHHHhHhcCCCEEEEEecCCCc
Q 000746 747 LDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF------------------------NSCIKEELRGKTRILVTNQLHF 802 (1303)
Q Consensus 747 i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~------------------------~~~i~~~~~~~TvilvtH~~~~ 802 (1303)
++.+|+||+|+|||+|.+|||||||||+||||++ ++++.+.++++|+|+|||+++.
T Consensus 723 i~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~ 802 (1495)
T PLN03232 723 LDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHF 802 (1495)
T ss_pred HHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhh
Confidence 9999999999999999999999999999999954 3456666689999999999999
Q ss_pred ccccCEEEEEeCCEEEEecCHHHHHhcchHHHHHHHHhccchhhhhhhhcccccccccccCcccccccccccCCCCCccc
Q 000746 803 LPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLMENAGKMEEMEEREEKDDSINSNQEVSKPVANRAVQVNEFPKNESY 882 (1303)
Q Consensus 803 l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 882 (1303)
++.||+|++|++|+|+++|+|+|+.++++.|.++.+..++.++.+++++. ..+..+. .+... . +........
T Consensus 803 l~~aD~Ii~L~~G~i~~~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~--~--~~~~~~~~~ 874 (1495)
T PLN03232 803 LPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLMENAGKMDATQEVNTN--DENILKL--GPTVT--I--DVSERNLGS 874 (1495)
T ss_pred HHhCCEEEEEeCCEEEEecCHHHHHhcchhHHHHHHhccccccccccccc--ccccccc--ccccc--c--ccccccccc
Confidence 99999999999999999999999999989999887654422111110000 0000000 00000 0 000000000
Q ss_pred cccccCCCcccchhhhhhcCccchhHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhhhHHHhhhcccccCCCCCchHHHH
Q 000746 883 TKKGKRGRSVLVKQEERETGIVSGSVLTRYKNALGGPWVIMILFACYLSTEVLRISSSTWLSFWTDQSTSKNYNPGFYIA 962 (1303)
Q Consensus 883 ~~~~~~~~~~~~~~e~~~~g~v~~~vy~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~ 962 (1303)
..+.++.+....++|+++.|.+++++|++|+++.|+.+.++++++++++.+++.+++++|+++|.+..........+|++
T Consensus 875 ~~~~~~~~~~~~~~e~~~~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~l~ 954 (1495)
T PLN03232 875 TKQGKRGRSVLVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQSTPKSYSPGFYIV 954 (1495)
T ss_pred ccccccchhhhhhHHHHhcCcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHH
Confidence 00011111224567888899999999999999988766666666667777888889999999999754322233568899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHH
Q 000746 963 IYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQ 1042 (1303)
Q Consensus 963 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~ 1042 (1303)
+|++++++..++.+++.+++...+.++++++|++++++++++|++|||++|+|+++|||++|++.+|+.++..+..++..
T Consensus 955 ~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~ 1034 (1495)
T PLN03232 955 VYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQ 1034 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHH
Confidence 99999999888999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHH
Q 000746 1043 LWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKI 1122 (1303)
Q Consensus 1043 ~~~~i~~~v~i~~~~~~~~~~~~pl~~~~~~i~~~~~~~~r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~ 1122 (1303)
++.+++.++++++++++..++++|+.+++++++.+|.+++|++++.+..+++|++++++|+++|++|||+|+.+++|.++
T Consensus 1035 ~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~ 1114 (1495)
T PLN03232 1035 LWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKI 1114 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHH
Confidence 88888888887777777777778887777778888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1123 NGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQAS 1202 (1303)
Q Consensus 1123 ~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~ 1202 (1303)
+.+..|.+.+..+.....++|+..++++++++++++++.+.+...+..+....+.+.+|++++|+..+..+++++.+.+.
T Consensus 1115 ~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~ 1194 (1495)
T PLN03232 1115 NGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQAS 1194 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888899999999888776666665555543332222233456788899999999999999999999
Q ss_pred HHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCC
Q 000746 1203 RAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAG 1282 (1303)
Q Consensus 1203 ~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSG 1282 (1303)
++|++++|+||+.++++.|+|++...+...+++.||.+|+|+|+||+|+|+++.++||||+||+|+||||||||||||||
T Consensus 1195 ~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSG 1274 (1495)
T PLN03232 1195 KAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAG 1274 (1495)
T ss_pred HHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCC
Confidence 99999999999999999888765322233355679999999999999999877778999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCCCeee
Q 000746 1283 KSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1283 KSTLi~lL~R~yd~~~G~I~ 1302 (1303)
||||+++|+|+|||++|+|+
T Consensus 1275 KSTL~~lL~rl~~p~~G~I~ 1294 (1495)
T PLN03232 1275 KSSMLNALFRIVELEKGRIM 1294 (1495)
T ss_pred HHHHHHHHhCCCcCCCceEE
Confidence 99999999999999999985
No 4
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1e-150 Score=1525.09 Aligned_cols=1224 Identities=33% Similarity=0.549 Sum_probs=981.5
Q ss_pred ccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhc-CCcccccccccchHHHHHHHHHHHHhhHHHHHHHHHHhhcc
Q 000746 48 VDSTFGAYTTCAVDSLVISISHSVLLGLCIFRIWLMNK-NSKARRYRLSSNCYNYMLGLLACYCTAEPLLRLVMGISIFN 126 (1303)
Q Consensus 48 ~~~~~~~~~~c~~~~~~~~~p~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (1303)
+++...|++|||++++++++|+++|++++++|++++++ +++... + +.++.+|.....++++++.+. ++...+..
T Consensus 16 ~~~~~~d~t~~f~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~-~--~~~~~~k~~~~~~~~~~~~~~--~~~~~~~~ 90 (1522)
T TIGR00957 16 WHTSNPDFTKCFQNTVLAWVPCFYLWVCFPCYFLYLSRHDRGYIQ-M--THLNKTKTALGFLLWIVCWAD--LFYSFWER 90 (1522)
T ss_pred CCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCC-c--chHHHHHHHHHHHHHHHHHHH--HHHHHHhc
Confidence 56666789999999999999999999999999999973 333111 1 123445655555554444311 12222221
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHHHHHHHHHHHhhhcccccc----chhhHH
Q 000746 127 LDGETSFAPFEMVSLIIEALAWCSMLIMICLETKFYIREFRWYVRFGVIYVLVGDAVILNLIIPMRDYYS----RITLYL 202 (1303)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 202 (1303)
+.. ....+..++++++.++++++.+++++.||.++.||+.....+ ++...+++.+..|+.|....... ......
T Consensus 91 ~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~s~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (1522)
T TIGR00957 91 SHG-RAPAPVFLVSPTLLGITMLLATFLIQLERRKGVQSSGIMLTF-WLVALVCALAILRSKILLALKEDAIVDPFRDTT 168 (1522)
T ss_pred ccc-ccccchhhhhhHHHHHHHHHHHHHHHHHHhcccCCCcchhHH-HHHHHHHHHHHHHHHHHHhhcccccccceehhh
Confidence 111 111245678888899999999999999999999998643333 33334578888888875422100 000111
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCCCCCcccCCcccccccccccCCCCCCCCCCccCChhhHHHHHchHHHHHhhhcCCCC
Q 000746 203 YISMVFCQALFGILILVYIPNLDPYPGYTIMQPEFVDNAEYEALPGGEHVCPERNASILSRTSFGWMTPLLQLGYKKPIT 282 (1303)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~~~f~Wl~~l~~~g~~~~L~ 282 (1303)
+...+.++ .++++ ++...++ .|..++ ...+.+.+||+++|++||++|||+||++++|||++|+
T Consensus 169 ~~~~~~~~----~~~~~-~~~~~~~---~~~~~~---------~~~~~~~~~e~~a~~~s~~~f~W~~pl~~~g~~~~L~ 231 (1522)
T TIGR00957 169 FYIYFALV----LSQLV-LSCFSDK---SPLFSE---------TNHDPNPCPESSASFLSRITFWWITGMAVYGYRQPLE 231 (1522)
T ss_pred HHHHHHHH----HHHHH-HHhhcCC---CCcccc---------ccccCCCCCcccCCHHHHHHHHHhHHHHHHHhcCCCC
Confidence 11211111 11112 2210111 111100 0012346899999999999999999999999999999
Q ss_pred CCCCCCCCccCcHHHHHHHHHHHHHHhhc-----------------------------------------cCCchHHHHH
Q 000746 283 EKDVWKLDTWDQTEILIEKFHRCWIEESQ-----------------------------------------RSKPWLLRAL 321 (1303)
Q Consensus 283 ~~dl~~l~~~~~s~~l~~~~~~~w~~~~~-----------------------------------------~~~~~l~~~l 321 (1303)
.+|||+++++++++.+.++|++.|+++.+ .++++|++++
T Consensus 232 ~~dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l 311 (1522)
T TIGR00957 232 ESDLWSLNKEDTSEMVVPVLVENWKKECKKTRKQPVSAVYGKKDPSKPKGSSQLDANEEVEALIVKSPHKPRKPSLFKVL 311 (1522)
T ss_pred hhhccCCCHhHhHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccCCccHHHHH
Confidence 99999999999999999999999987621 1246899999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 322 NNSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGD-PAWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFRLRS 400 (1303)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 400 (1303)
+++|++.++.+++++++..++.+++|++++.+++++.+++ +.+.+|.+++++++..++..++.++|.+...+++.++|.
T Consensus 312 ~~~~~~~~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~ 391 (1522)
T TIGR00957 312 YKTFGPYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKT 391 (1522)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999986543 334577776666666666677788888888999999999
Q ss_pred HHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 401 TLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQLHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLVLMV 480 (1303)
Q Consensus 401 ~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~~~~~~ 480 (1303)
.++..+|+|.++++....++.++|+++|+|++|++++.++...+|.+|..|++++++++++|..+|++++++++++++++
T Consensus 392 ~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~ 471 (1522)
T TIGR00957 392 AVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLATYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMV 471 (1522)
T ss_pred HHHHHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999988888999999999999999999988899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000746 481 PLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIP 560 (1303)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~ 560 (1303)
|++.++.+++++.++++++..|+|.+.++|+++|||+||+++||+.+.+++++.|++|++..++..+...+..+.....+
T Consensus 472 ~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~ 551 (1522)
T TIGR00957 472 PLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTP 551 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998888887777666666667
Q ss_pred HHhHHhhhhhhhhhC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--CCCCCC
Q 000746 561 VVVTVVSFGTFTLLG--GDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMP--NPPLEP 636 (1303)
Q Consensus 561 ~~~~~~~f~~~~~~~--~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~--~~~~~~ 636 (1303)
.++.+++|+.|.+.. +.++++.+|+++++++.+..|+..++..+..+.++.+|++||++|++.++..... .....+
T Consensus 552 ~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~ 631 (1522)
T TIGR00957 552 FLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKP 631 (1522)
T ss_pred HHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccccCC
Confidence 777777888887763 5799999999999999999999999999999999999999999999765432110 011111
Q ss_pred -CCCcEEEEeeEEEeCCC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcCeEEEEccCccc
Q 000746 637 -ELPAVSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWI 714 (1303)
Q Consensus 637 -~~~~i~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~~iayv~Q~p~l 714 (1303)
....++++|++|+|+++ +++|+|+||++++|++++|+||||||||||+++|+|+++|.+| .+.++++|+||||+||+
T Consensus 632 ~~~~~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G-~i~~~g~i~yv~Q~~~l 710 (1522)
T TIGR00957 632 GEGNSITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG-HVHMKGSVAYVPQQAWI 710 (1522)
T ss_pred CCCCcEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCc-EEEECCEEEEEcCCccc
Confidence 12369999999999753 4799999999999999999999999999999999999999987 67788999999999999
Q ss_pred ccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-------------
Q 000746 715 FNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN------------- 781 (1303)
Q Consensus 715 ~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~------------- 781 (1303)
|++||||||.||.++|+++|++++++|++.+|++.+|+||+|.+||+|.+|||||||||+||||++.
T Consensus 711 ~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~sa 790 (1522)
T TIGR00957 711 QNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSA 790 (1522)
T ss_pred cCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999642
Q ss_pred -----------HHH--hHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchHHHHHHHHhccchhhhh
Q 000746 782 -----------SCI--KEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLMENAGKMEEMEE 848 (1303)
Q Consensus 782 -----------~~i--~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~ 848 (1303)
.++ .+..+++|+|+|||+++.++.||+|++|++|+++++|+++++.++++.|.++.......++.+.
T Consensus 791 LD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~ 870 (1522)
T TIGR00957 791 VDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTYAPDEQQGH 870 (1522)
T ss_pred cCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcchhHHHHHHhhcccccccc
Confidence 222 2245789999999999999999999999999999999999999888888888764332111100
Q ss_pred hhhc---ccccccccc-------c-----Ccccccc--cccccCCC-------CCccccccccCCCcccchhhhhhcCcc
Q 000746 849 REEK---DDSINSNQE-------V-----SKPVANR--AVQVNEFP-------KNESYTKKGKRGRSVLVKQEERETGIV 904 (1303)
Q Consensus 849 ~~~~---~~~~~~~~~-------~-----~~~~~~~--~~~~~~~~-------~~~~~~~~~~~~~~~~~~~e~~~~g~v 904 (1303)
.++. ....+..+. . ..+.... ....+... ..+....+.++......++|+++.|.+
T Consensus 871 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v 950 (1522)
T TIGR00957 871 LEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAEAKEETWKLMEADKAQTGQV 950 (1522)
T ss_pred ccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccchhhhHHHHHHhcCcc
Confidence 0000 000000000 0 0000000 00000000 000000000001122345677889999
Q ss_pred chhHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhhhHHHhhhcccccC--CCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 905 SGSVLTRYKNALGGPWVIMILFACYLSTEVLRISSSTWLSFWTDQSTS--KNYNPGFYIAIYTILAFGQVTVTLLNSYWL 982 (1303)
Q Consensus 905 ~~~vy~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 982 (1303)
++++|++|++++|... +++.++++++.+++.+++++|+++|++.... ......+|+++|++++++..++.++..++.
T Consensus 951 ~~~~y~~Y~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~ 1029 (1522)
T TIGR00957 951 ELSVYWDYMKAIGLFI-TFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAV 1029 (1522)
T ss_pred cHHHHHHHHHHcCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987543 3333444555667788899999999975321 112345677889999888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCcccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 983 IISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLW 1062 (1303)
Q Consensus 983 ~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~ 1062 (1303)
...+.++++++|++++++++++|++|||++|+|+++|||++|++.+|+.++..+..++..++.+++.++++++.+|++++
T Consensus 1030 ~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~ 1109 (1522)
T TIGR00957 1030 SIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAV 1109 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 000746 1063 AIMPLLILFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNR 1142 (1303)
Q Consensus 1063 ~~~pl~~~~~~i~~~~~~~~r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~ 1142 (1303)
+++|+++++++++++|.+++|++++.+.++++|+++++.|+++|++|||+|+++++|.+++.+..|...+..+.....++
T Consensus 1110 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 1189 (1522)
T TIGR00957 1110 IIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANR 1189 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCC
Q 000746 1143 WLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPS 1222 (1303)
Q Consensus 1143 wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~ 1222 (1303)
|+.+++++++.+++++++.+.+...+ ...+|.+++++.|+.++..++.++++.++++|++++|+||+.+|++.|+
T Consensus 1190 ~~~~~~~~~~~~~~~~~~~~~v~~~~-----~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~ 1264 (1522)
T TIGR00957 1190 WLAVRLECVGNCIVLFAALFAVISRH-----SLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEK 1264 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999877766555555543322 2347889999999999999999999999999999999999999999887
Q ss_pred CCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1223 EAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1223 E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|.+...+...+++.||.+|+|+|+||+|+|+++.++|||||||+|+||||||||||||||||||+++|+|+|||++|+|+
T Consensus 1265 e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~ 1344 (1522)
T TIGR00957 1265 EAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEII 1344 (1522)
T ss_pred CccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEE
Confidence 76432233345667999999999999999987767899999999999999999999999999999999999999999985
No 5
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=8.5e-136 Score=1374.92 Aligned_cols=1039 Identities=27% Similarity=0.477 Sum_probs=863.7
Q ss_pred CCCCccCChhhHHHHHchHHHHHhhhcCCCCCCCCCCCCccCcHHHHHHHHHHHHHHhhc--cCCchHHHHHHHHHhHHH
Q 000746 252 VCPERNASILSRTSFGWMTPLLQLGYKKPITEKDVWKLDTWDQTEILIEKFHRCWIEESQ--RSKPWLLRALNNSFGGRF 329 (1303)
Q Consensus 252 ~~pe~~a~~~s~~~f~Wl~~l~~~g~~~~L~~~dl~~l~~~~~s~~l~~~~~~~w~~~~~--~~~~~l~~~l~~~~~~~~ 329 (1303)
.+||+++|++||++|||+||++++|||++|+.+|||+++++++++.+.++|++.|+++.+ +++++|+++++++|++.+
T Consensus 3 ~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~L~~~l~~~~~~~~ 82 (1490)
T TIGR01271 3 RSPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDRELASAKKNPKLLNALRRCFFWRF 82 (1490)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999999999999998643 356899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 330 WLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDP--AWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFRLRSTLVAAIF 407 (1303)
Q Consensus 330 ~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~L~~~i~ 407 (1303)
+..++++++..++.+++|++++.+++++...+. .+.++++++.+++..++..++.+++.+...+.+.++|.++...+|
T Consensus 83 ~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~iy 162 (1490)
T TIGR01271 83 VFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIY 162 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999854222 235666666666666666677777777778899999999999999
Q ss_pred HHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 408 RKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQLHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLVLMVPLQTFII 487 (1303)
Q Consensus 408 ~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~~~~~~~~~~~~~ 487 (1303)
+|.++++....++.++|+++|+|++|++++.++...+|.+|..|++++++++++|.++|++++++++++++++|++.++.
T Consensus 163 ~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~~~ 242 (1490)
T TIGR01271 163 KKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQACLG 242 (1490)
T ss_pred HHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHhh
Q 000746 488 SKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIPVVVTVVS 567 (1303)
Q Consensus 488 ~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (1303)
+++.++++++++..|+|.+.++|+++|||+||+|+||+.+.+++++.|++|++..++..+...+..++....+.++++++
T Consensus 243 ~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (1490)
T TIGR01271 243 QKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGFFVVFLS 322 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988887777777777777788889
Q ss_pred hhhhhhhCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcEEEEee
Q 000746 568 FGTFTLLGGDLTPARAFTSLSLFAVLRFPLN-MLPNLLSQVVNANVSLQRLEELLLAEERILMPNPPLEPELPAVSIKNG 646 (1303)
Q Consensus 568 f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~-~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~ 646 (1303)
|++|.+.++ ++++.+|+++++++.+..|+. .+|..+..+.++.+|++||++||..++....+ .......++++|+
T Consensus 323 f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~---~~~~~~~i~~~~~ 398 (1490)
T TIGR01271 323 VVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLE---YNLTTTEVEMVNV 398 (1490)
T ss_pred HHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc---ccCCCCceEEecc
Confidence 998887654 789999999999999999984 79999999999999999999999876532111 1112235899999
Q ss_pred EEEeCCC---------------------------------CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC
Q 000746 647 NFSWDSK---------------------------------SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP 693 (1303)
Q Consensus 647 ~f~~~~~---------------------------------~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~ 693 (1303)
+|.|+.. +++|+|+||+|++|++++|+||+|||||||+++|+|+++|
T Consensus 399 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~ 478 (1490)
T TIGR01271 399 TASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEP 478 (1490)
T ss_pred eEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 9999531 2589999999999999999999999999999999999999
Q ss_pred CCCceEEEcCeEEEEccCcccccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHH
Q 000746 694 LKDASVVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRV 773 (1303)
Q Consensus 694 ~~g~~~~~~~~iayv~Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRi 773 (1303)
.+| .+.++++|+||+|+||+|++||+|||+||.++++++|.+++++|+|++|++.+|+||+|.||++|.+|||||||||
T Consensus 479 ~~G-~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi 557 (1490)
T TIGR01271 479 SEG-KIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARI 557 (1490)
T ss_pred CCc-eEEECCEEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHH
Confidence 987 5678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH------------------------HHHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 774 SMARAVF------------------------NSCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 774 aLARAl~------------------------~~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
+||||++ +.++.+..+++|+|+|||+++.++.||+|++|++|++++.|+++++.+.
T Consensus 558 ~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~ 637 (1490)
T TIGR01271 558 SLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAK 637 (1490)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 9999954 3455666689999999999999999999999999999999999999887
Q ss_pred chHHHHHHHHhccchh----------h--------h--------hhhh------ccccc-cc-------c----------
Q 000746 830 GRLFQKLMENAGKMEE----------M--------E--------EREE------KDDSI-NS-------N---------- 859 (1303)
Q Consensus 830 ~~~~~~l~~~~~~~~~----------~--------~--------~~~~------~~~~~-~~-------~---------- 859 (1303)
++.|.+.+.......+ . . +++. +.... +. +
T Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (1490)
T TIGR01271 638 RPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPPEFAEKRKQSIILNPIASARKFSF 717 (1490)
T ss_pred ChHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 6666665531110000 0 0 0000 00000 00 0
Q ss_pred -------------cc-cCcccc------c----cc-ccccCC---------------------C--C----Ccc----cc
Q 000746 860 -------------QE-VSKPVA------N----RA-VQVNEF---------------------P--K----NES----YT 883 (1303)
Q Consensus 860 -------------~~-~~~~~~------~----~~-~~~~~~---------------------~--~----~~~----~~ 883 (1303)
+. ...+.. . .. ...... + . .+. ..
T Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1490)
T TIGR01271 718 VQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSVLQLMTHSNRGENRREQLQTSFR 797 (1490)
T ss_pred ccccccccccccccchhcccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccccc
Confidence 00 000000 0 00 000000 0 0 000 00
Q ss_pred -------------c------c-cc-----------CC--CcccchhhhhhcCccchhHHHHHHHHcCchHHHHHHHHHHH
Q 000746 884 -------------K------K-GK-----------RG--RSVLVKQEERETGIVSGSVLTRYKNALGGPWVIMILFACYL 930 (1303)
Q Consensus 884 -------------~------~-~~-----------~~--~~~~~~~e~~~~g~v~~~vy~~y~~~~g~~~~~~~~~~~~~ 930 (1303)
. . .. +. .....++|+++.|.++|++|++|+++.|+++.+.+++++++
T Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vY~~Y~~~~g~~~~~~~~~~~~~ 877 (1490)
T TIGR01271 798 KKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYLRYITTNRNLVFVLIFCLVIF 877 (1490)
T ss_pred cccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 0 0 00 00 01123456778899999999999999876555555555566
Q ss_pred HHHHHHhhhhHHHhhhcccc------c-C-C-----------CCCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 931 STEVLRISSSTWLSFWTDQS------T-S-K-----------NYNPGFY-IAIYTILAFGQVTVTLLNSYWLIISSLRAA 990 (1303)
Q Consensus 931 ~~~~~~~~~~~~l~~w~~~~------~-~-~-----------~~~~~~~-~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 990 (1303)
+.+++..++++|+.+|.+.. . . . .....+| +++|++++++..++.+++.+++.+.+.+++
T Consensus 878 ~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 957 (1490)
T TIGR01271 878 LAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFFRGLPLVHTLLTVS 957 (1490)
T ss_pred HHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788889999999887521 0 0 0 0011233 445555555555667778888899999999
Q ss_pred HHHHHHHHHHHHcCcccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 991 KRLHDSMLNSILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLIL 1070 (1303)
Q Consensus 991 ~~lr~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~~~~pl~~~ 1070 (1303)
+++|++++++++++|++|||++|+|+++|||++|++.+|+.++..+..++..++.+++.++++++.+|+++++++|++++
T Consensus 958 ~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~~~~l~~~ 1037 (1490)
T TIGR01271 958 KRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIPVAVI 1037 (1490)
T ss_pred HHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988888888888888899888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 000746 1071 FYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLET 1150 (1303)
Q Consensus 1071 ~~~i~~~~~~~~r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~ 1150 (1303)
+++++++|.+.+|++++.+..+++|+++++.|+++|+.|||+|++++++.+++.+..+...+..+.....++|+..++++
T Consensus 1038 ~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~ 1117 (1490)
T TIGR01271 1038 FIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQMRIDI 1117 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999999999999888888888899999999998
Q ss_pred HHHHHHHHHHHHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCC-
Q 000746 1151 LGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVE- 1229 (1303)
Q Consensus 1151 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~- 1229 (1303)
++.+++..++.+++... . ...+.+|++++|+..+...+.++++.+.++|+.+.|++|+.+|++.|+|.+...+
T Consensus 1118 i~~~~~~~~~~l~~~~~-~-----~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~ 1191 (1490)
T TIGR01271 1118 IFVFFFIAVTFIAIGTN-Q-----DGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGG 1191 (1490)
T ss_pred HHHHHHHHHHHHHHHHh-c-----CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccc
Confidence 76655444333333211 1 1246788889999999999999999999999999999999999998877542111
Q ss_pred -------------CCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccC
Q 000746 1230 -------------SNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVEL 1296 (1303)
Q Consensus 1230 -------------~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~ 1296 (1303)
...+++.||.+|+|+|+||+|+|+++.++||+||||+|+||||||||||||||||||+++|+|+|+
T Consensus 1192 ~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~- 1270 (1490)
T TIGR01271 1192 GGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS- 1270 (1490)
T ss_pred ccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-
Confidence 112345799999999999999998877899999999999999999999999999999999999998
Q ss_pred CCCeee
Q 000746 1297 ERGENI 1302 (1303)
Q Consensus 1297 ~~G~I~ 1302 (1303)
++|+|+
T Consensus 1271 ~~G~I~ 1276 (1490)
T TIGR01271 1271 TEGEIQ 1276 (1490)
T ss_pred CCcEEE
Confidence 789985
No 6
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=7.6e-127 Score=1287.22 Aligned_cols=1046 Identities=29% Similarity=0.488 Sum_probs=854.4
Q ss_pred CCCCCccCChhhHHHHHchHHHHHhhhcCCCCCCCCCCCCccCcHHHHHHHH----HH------HHHHhh----------
Q 000746 251 HVCPERNASILSRTSFGWMTPLLQLGYKKPITEKDVWKLDTWDQTEILIEKF----HR------CWIEES---------- 310 (1303)
Q Consensus 251 ~~~pe~~a~~~s~~~f~Wl~~l~~~g~~~~L~~~dl~~l~~~~~s~~l~~~~----~~------~w~~~~---------- 310 (1303)
.+.||+++||+.++++.|++|++.+..|..|+++|||+...+.++-+...++ ++ +|+-..
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (1560)
T PTZ00243 58 TPVPEETASWFQRYYYGWVYEYVLLASKEQLTEEDLPPPTRDVRAHECGLRLSRAVQAAMYERNAWNCMVGAEVVSTLDA 137 (1560)
T ss_pred CCCccchhhHHHHHHHHHHHHHHHHHHHhhcccccCCCCcchhhHHHHhHHHHHHHHHHHHhhcccccccccEEEeeccc
Confidence 3579999999999999999999999999999999999988887775443333 32 243210
Q ss_pred --c-----------------------------------------------------------------------------
Q 000746 311 --Q----------------------------------------------------------------------------- 311 (1303)
Q Consensus 311 --~----------------------------------------------------------------------------- 311 (1303)
+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (1560)
T PTZ00243 138 SSRGVLRWVGVPQQGGYTRMMAGVEWSVPPALRTAARSDDSGASPFFNGVAHGEHLFTPEQSNMSTLEEPTDVRLYLSST 217 (1560)
T ss_pred cccceEEeecccccCCCcceeeeeeeccCchhhhcccCCCCCCccccccccccccccCcccCCceeeeeeheeeEeeccc
Confidence 0
Q ss_pred -----------cCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcch-HHHHHHHHHHHHHHH
Q 000746 312 -----------RSKPWLLRALNNSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAW-IGYIYAFLIFVGVSF 379 (1303)
Q Consensus 312 -----------~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~-~~~~~~~~~~~~~~~ 379 (1303)
++..++++++++++++.++..++++++.+++.+++|++++.+++++++++..+ .++++++++++..++
T Consensus 218 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~~~~~g~~l~~~l~~~~~~ 297 (1560)
T PTZ00243 218 GSVVRPGPPPTPKRLSLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNATWGRGLGLVLTLFLTQLI 297 (1560)
T ss_pred ccccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHH
Confidence 00137999999999999999999999999999999999999999986654332 355566666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccc--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 380 GVLTEAQYFQNVWRVGFRLRSTLVAAIFRKTLRLTHEARK--GFPSGKVTNMITTDANALQQISQQLHGLWSAPFRITLS 457 (1303)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~lr~~L~~~i~~k~l~l~~~~~~--~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~~~~i~~~ 457 (1303)
..++.++|.+...+.+.++|.+|...+|+|.++++..... +.++|+++|+|++|++++.+++..++.+|..|++++++
T Consensus 298 ~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~~l~~~Pl~li~~ 377 (1560)
T PTZ00243 298 QSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMVLLLS 377 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888889999999999999999999999886654 56899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHH
Q 000746 458 MVLLYQQLGVASLLGSLMLVLMVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDD 537 (1303)
Q Consensus 458 ~~~l~~~lg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~ 537 (1303)
++++|..+|+++++|++++++++|++.++.+++.+.+++.++.+|+|++.++|+++|||+||++|||+.|.+++++.|++
T Consensus 378 ~~lL~~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~ 457 (1560)
T PTZ00243 378 ILLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRAR 457 (1560)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 538 ELSWFRKAQFLSAFNSFILNSIPVVVTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRL 617 (1303)
Q Consensus 538 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri 617 (1303)
|++..++......+..++....|.++.+++|++|.+.++.++++.+|+++++++.+..|+..+|..+..+.++.+|++||
T Consensus 458 El~~l~~~~~~~~~~~~~~~~~p~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI 537 (1560)
T PTZ00243 458 ELRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRI 537 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888888888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhc-------C---------C--C--------------C---C-------------------------CCCC
Q 000746 618 EELLLAEERIL-------M---------P--N--------------P---P-------------------------LEPE 637 (1303)
Q Consensus 618 ~~~l~~~~~~~-------~---------~--~--------------~---~-------------------------~~~~ 637 (1303)
++||+.+|... . + . + + ....
T Consensus 538 ~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (1560)
T PTZ00243 538 STFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHP 617 (1560)
T ss_pred HHHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccc
Confidence 99997654100 0 0 0 0 0 0000
Q ss_pred CCcEEEEeeEEEeC---------------------------------------CCCCccceeeeEecCCcEEEEEcCCCC
Q 000746 638 LPAVSIKNGNFSWD---------------------------------------SKSPTLSNINLDIPVGSLVAIVGGTGE 678 (1303)
Q Consensus 638 ~~~i~~~~~~f~~~---------------------------------------~~~~~L~~i~l~i~~G~~~~ivG~sGs 678 (1303)
.+.+.++|++|+|+ +++++|+|+||+|++|++++|+|||||
T Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGs 697 (1560)
T PTZ00243 618 SPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGS 697 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCC
Confidence 12456677766542 113589999999999999999999999
Q ss_pred ChHHHHHHHhcCCCCCCCceEEEcCeEEEEccCcccccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccc
Q 000746 679 GKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEI 758 (1303)
Q Consensus 679 GKSTLl~~llg~~~~~~g~~~~~~~~iayv~Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~i 758 (1303)
|||||+++|+|+++|++| .+.++++|+||||+||+|++||+|||.|+.++++++|.+++++|++++|++.+|+|++|.+
T Consensus 698 GKSTLL~~i~G~~~~~~G-~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i 776 (1560)
T PTZ00243 698 GKSTLLQSLLSQFEISEG-RVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEI 776 (1560)
T ss_pred cHHHHHHHHhcCCCCCCc-EEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHh
Confidence 999999999999999987 5667889999999999999999999999998888899999999999999999999999999
Q ss_pred cCCCCCCchHHHHHHHHHHHHH------------------------HHHHhHhcCCCEEEEEecCCCcccccCEEEEEeC
Q 000746 759 GERGVNISGGQKQRVSMARAVF------------------------NSCIKEELRGKTRILVTNQLHFLPHVDRIILVSE 814 (1303)
Q Consensus 759 ge~G~~LSGGQkQRiaLARAl~------------------------~~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~ 814 (1303)
|++|.+|||||||||+||||++ ++++...++++|+|+|||+++.++.||+|++|++
T Consensus 777 ~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~ 856 (1560)
T PTZ00243 777 GEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGD 856 (1560)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEEC
Confidence 9999999999999999999954 2344445578999999999999999999999999
Q ss_pred CEEEEecCHHHHHhcchHHHHHHHHhccchhhhhhhhcccccccccccCc--ccccccccccCCCCCccccccccCCCcc
Q 000746 815 GMIKEEGSFEELSKHGRLFQKLMENAGKMEEMEEREEKDDSINSNQEVSK--PVANRAVQVNEFPKNESYTKKGKRGRSV 892 (1303)
Q Consensus 815 G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 892 (1303)
|+++++|+++++.+.+ .|.++........+..+.+...+....+..... .............. .............
T Consensus 857 G~i~~~G~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 934 (1560)
T PTZ00243 857 GRVEFSGSSADFMRTS-LYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAE-GGDGAALDAAAGR 934 (1560)
T ss_pred CEEEEecCHHHHHhCh-HHHHHHHhhcccccccccccccccccccccccccccccccccccccccc-cccccccccccch
Confidence 9999999999998754 566665432111100000000000000000000 00000000000000 0000000011123
Q ss_pred cchhhhhhcCccchhHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhhhHHHhhhcccccCCCCCchHHHHHHHHHHHHHH
Q 000746 893 LVKQEERETGIVSGSVLTRYKNALGGPWVIMILFACYLSTEVLRISSSTWLSFWTDQSTSKNYNPGFYIAIYTILAFGQV 972 (1303)
Q Consensus 893 ~~~~e~~~~g~v~~~vy~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~i~~~l~~~~~ 972 (1303)
+.++|+++.|.++|++|+.|++++|+....+++++++++.+++..++++|+++|++.... .....|+++|+++.++..
T Consensus 935 l~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~~--~~~~~~l~~y~~~~~~~~ 1012 (1560)
T PTZ00243 935 LMTREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSFK--LSAATYLYVYLGIVLLGT 1012 (1560)
T ss_pred hhhHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC--CCcccHHHHHHHHHHHHH
Confidence 456677888999999999999998876655555555666778888899999999875321 234567788888777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 973 TVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVL 1052 (1303)
Q Consensus 973 ~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~ 1052 (1303)
++.+++.+.....+.++++++|++++++++++|++|||++++|+|+|||++|++.+|+.++..+..++..++.+++.+++
T Consensus 1013 ~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~ 1092 (1560)
T PTZ00243 1013 FSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILV 1092 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666667778888999999999999999999999999999999999999999999999888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhH
Q 000746 1053 IGIVSTISLWAIMPLLILFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIR 1132 (1303)
Q Consensus 1053 i~~~~~~~~~~~~pl~~~~~~i~~~~~~~~r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~ 1132 (1303)
+++..|+++++++|+.++++.+..+|.+..|++++.+..+++|++++++|+++|+.|||+|++++++.+++.+..|...+
T Consensus 1093 ~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~ 1172 (1560)
T PTZ00243 1093 TSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYS 1172 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 88888877777778777778888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 000746 1133 FTLANTSSNRWLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVE 1212 (1303)
Q Consensus 1133 ~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sve 1212 (1303)
..+.....++|+.++++++..++++.++.+++...... ......+.+++++.|+.++..++.++++.+.++|+.++|+|
T Consensus 1173 ~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~e 1251 (1560)
T PTZ00243 1173 CSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLR-ATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVE 1251 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988889999999999887765544443333211000 11123688899999999999999999999999999999999
Q ss_pred HHHHhhcC-CCCCCCC-C----------------------CCCCCC---CCCCCcceEEEEEEEEEeCCCCCCcccccee
Q 000746 1213 RVGTYIDL-PSEAPGM-V----------------------ESNRPP---PAWPSSGSIKFEDVVLRYRPELPPVLHGLSF 1265 (1303)
Q Consensus 1213 Ri~~~~~~-~~E~~~~-~----------------------~~~~~~---~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isl 1265 (1303)
|+.+|++. |+|+... . ++..++ +.||..|+|+|+||+|+|+++.++|||||||
T Consensus 1252 Ri~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf 1331 (1560)
T PTZ00243 1252 RLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSF 1331 (1560)
T ss_pred HHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecceE
Confidence 99999964 4332100 0 011111 2356779999999999998877789999999
Q ss_pred eecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1266 TVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1266 ~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
+|+||||||||||||||||||+++|+|+|||++|+|+
T Consensus 1332 ~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~ 1368 (1560)
T PTZ00243 1332 RIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIR 1368 (1560)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 9999999999999999999999999999999999985
No 7
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.3e-98 Score=926.27 Aligned_cols=945 Identities=18% Similarity=0.253 Sum_probs=635.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcch---H--HHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHH
Q 000746 329 FWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAW---I--GYIYAFLIFVGVS--F-GVLTEAQYFQNVWRVGFRLRS 400 (1303)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~---~--~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~lr~ 400 (1303)
+..+.+..++.++..++..++.+.+.+.+....... . -+.+. .++++.. + ..+...-+.+..-|...|+|.
T Consensus 30 m~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~~~~~~~~~~~l~-~~~lg~~~~~~~~~q~~c~~~~geRq~~riR~ 108 (1228)
T KOG0055|consen 30 MILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNKIASSEVSKVALY-FVYLGVGVFISGFIQVSCWMRTGERQTARIRS 108 (1228)
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHHHHhccchhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666677788888765432110 0 01111 1111111 1 111111222333466677777
Q ss_pred HHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHH-HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 401 TLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQIS-QQLHGLW----SAPFRITLSMVLLYQQLGVASLLGSLM 475 (1303)
Q Consensus 401 ~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~-~~~~~~~----~~~~~i~~~~~~l~~~lg~~~l~~~~~ 475 (1303)
.+..++.+|...+ ++...+|++.++|+.|++++++.+ ..+..++ .....++++++..|+ .+++.+.+
T Consensus 109 ~yl~~iLrQdi~~----fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~~W~----Ltlv~l~~ 180 (1228)
T KOG0055|consen 109 KYLKAILRQDIGW----FDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYYGWK----LTLVMLSF 180 (1228)
T ss_pred HHHHHHHhCccce----eecccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 7777766655554 445566999999999999999864 2332222 222233344444333 23333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 476 LVLMVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFI 555 (1303)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~ 555 (1303)
..++......+++.+.+...+.++...+..+...|+++++|++.+|+.|+...+++.+.-+.-.+...+.....++....
T Consensus 181 ~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g~~~G~~~G~ 260 (1228)
T KOG0055|consen 181 IPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKKGLFKGLGLGF 260 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 22223333455666777778888888899999999999999999999999999999887776666655555544443322
Q ss_pred HHHH--hHHhHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--
Q 000746 556 LNSI--PVVVTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPN-- 631 (1303)
Q Consensus 556 ~~~~--~~~~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~-- 631 (1303)
.... ......++||...+..+..++|.+++++.........+.+....+..+..+++|..+|.+.++..+..+...
T Consensus 261 ~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~ 340 (1228)
T KOG0055|consen 261 TFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKG 340 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCccccc
Confidence 2211 223456778877777888999998888766666666788888889999999999999999998655432211
Q ss_pred -CCCCCCCCcEEEEeeEEEeCCCC--CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE--------
Q 000746 632 -PPLEPELPAVSIKNGNFSWDSKS--PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-------- 700 (1303)
Q Consensus 632 -~~~~~~~~~i~~~~~~f~~~~~~--~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-------- 700 (1303)
.......+.|+++||.|+||.++ ++|+|+||+|++|+.+++||||||||||++++|.|+|+|++|.+..
T Consensus 341 ~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~ 420 (1228)
T KOG0055|consen 341 GRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNL 420 (1228)
T ss_pred CCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhc
Confidence 11122356899999999999876 7999999999999999999999999999999999999999985431
Q ss_pred ----EcCeEEEEccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHH
Q 000746 701 ----IRGTVAYVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSM 775 (1303)
Q Consensus 701 ----~~~~iayv~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaL 775 (1303)
+|++||.|+|+|.||++||+|||.+|+| .+++++.++++.++..+++..+|+|++|.+||+|..|||||||||||
T Consensus 421 ~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAI 500 (1228)
T KOG0055|consen 421 NLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAI 500 (1228)
T ss_pred chHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHH
Confidence 4668999999999999999999999996 68899999999999999999999999999999999999999999999
Q ss_pred HHHHH-----------------------HHHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchH
Q 000746 776 ARAVF-----------------------NSCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRL 832 (1303)
Q Consensus 776 ARAl~-----------------------~~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~ 832 (1303)
|||++ ++++++..+|+|.|+||||++++++||+|++|++|+|+|.|+|+||++.+|.
T Consensus 501 ARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~G~ 580 (1228)
T KOG0055|consen 501 ARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIALGGI 580 (1228)
T ss_pred HHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHhccch
Confidence 99954 4567777899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccchhhhhhhhcccccccccccCccc-ccccccccCCCCCccccccccCCCcccchhhhhhcCccchhHHHH
Q 000746 833 FQKLMENAGKMEEMEEREEKDDSINSNQEVSKPV-ANRAVQVNEFPKNESYTKKGKRGRSVLVKQEERETGIVSGSVLTR 911 (1303)
Q Consensus 833 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~ 911 (1303)
|.++++.+....+.++.+++.+..+......... .......+.............+.......+++ ....+++
T Consensus 581 Y~~lv~~Q~~~~~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~------~~~s~~~ 654 (1228)
T KOG0055|consen 581 YSSLVRLQELEKAAEDEEEEESLKEERSRSLKSSSSSPSLSRGSNRSNLLSVKPEGEDPEEPVSEED------EKVSFWR 654 (1228)
T ss_pred HHHHHHHHhhhhhhhccccccchhhhhhhccccccccccccCCcccccccccccccccccccccccc------ccccHHH
Confidence 9999976532221111000000000000000000 00000000000000000000000000001111 1112333
Q ss_pred HHHHcCchH-HHHHHHHHHHHHH----HHHhhhhHHHhhhccccc-CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 912 YKNALGGPW-VIMILFACYLSTE----VLRISSSTWLSFWTDQST-SKNYNPGFYIAIYTILAFGQVTVTLLNSYWLIIS 985 (1303)
Q Consensus 912 y~~~~g~~~-~~~~~~~~~~~~~----~~~~~~~~~l~~w~~~~~-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 985 (1303)
-++...+-| .+++..++.++.. ++.......+........ ........|.++|++++++..++.+++.|++.++
T Consensus 655 i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f~~~ 734 (1228)
T KOG0055|consen 655 IFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQHYFFGIA 734 (1228)
T ss_pred HHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333222 2222222222221 122222222222221111 1112234588899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCcccccc--cCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 986 SLRAAKRLHDSMLNSILRAPMLFFH--TNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWA 1063 (1303)
Q Consensus 986 ~~~~~~~lr~~l~~~ll~~p~~fFd--~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~~ 1063 (1303)
+++.+.++|.++|+++++.+++||| +|. |+|.+|+.+|...+...+...+..++..+..++..+++.++..|.++++
T Consensus 735 ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~lalv 813 (1228)
T KOG0055|consen 735 GEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRLALV 813 (1228)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998 466 9999999999999999999999999998888888888888888877766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 000746 1064 IMPLLILFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRW 1143 (1303)
Q Consensus 1064 ~~pl~~~~~~i~~~~~~~~r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w 1143 (1303)
++.+.|++++....+.+......+.+............|++++++||++|+.|+++.+.+.+.++...+...... .|
T Consensus 814 ~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~---~i 890 (1228)
T KOG0055|consen 814 VLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRG---LI 890 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 554444443333333322222223333333344567899999999999999999999999999887777665543 23
Q ss_pred HHHHHHHHHH-------HHHHHHHHHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 000746 1144 LTIRLETLGG-------IMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGT 1216 (1303)
Q Consensus 1144 l~~~l~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~ 1216 (1303)
.++...+-.. +.+++++.+ +. .+... +..+...+..+..-...+........++-.+..|+.++++
T Consensus 891 ~gl~f~~sqs~~~~~~A~~f~~G~~L-i~-~g~~~-----~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~ 963 (1228)
T KOG0055|consen 891 SGLGFGFSQSLLFFVYALSFWYGARL-IS-NGEMT-----FEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFE 963 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH-Hh-cCCcC-----HHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHH
Confidence 3433333222 222222222 22 11111 1222111111111223344455566788889999999999
Q ss_pred hhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeC--CCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcc
Q 000746 1217 YIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYR--PELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIV 1294 (1303)
Q Consensus 1217 ~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~--~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~y 1294 (1303)
++|.+++.+...+. .....+.+|+|+|+||+|+|+ |+ .+||+|+||+|++||+||+||||||||||++.||.|||
T Consensus 964 i~dr~~~i~~~~~~--~~~~~~~~G~I~~~~V~F~YPsRP~-~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfY 1040 (1228)
T KOG0055|consen 964 ILDRKPTIDPDSTS--GGKLPNVKGDIEFRNVSFAYPTRPD-VPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFY 1040 (1228)
T ss_pred HhcCCCCCCCCCCC--CCccccceeEEEEeeeEeeCCCCCC-chhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 99987654322111 111224789999999999995 33 37999999999999999999999999999999999999
Q ss_pred cCCCCeee
Q 000746 1295 ELERGENI 1302 (1303)
Q Consensus 1295 d~~~G~I~ 1302 (1303)
||++|.|.
T Consensus 1041 dp~~G~V~ 1048 (1228)
T KOG0055|consen 1041 DPDAGKVK 1048 (1228)
T ss_pred CCCCCeEE
Confidence 99999985
No 8
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.1e-89 Score=918.96 Aligned_cols=964 Identities=16% Similarity=0.199 Sum_probs=638.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 318 LRALNNSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFR 397 (1303)
Q Consensus 318 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (1303)
++...+.+++.++.+.++.++.+++.++.|++++.+++.+..++.. ......+++++++ ..++...+.+...+++.+
T Consensus 51 ~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~~~--~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~ 127 (1466)
T PTZ00265 51 FKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGENV--NDIIFSLVLIGIF-QFILSFISSFCMDVVTTK 127 (1466)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH--HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3333445566778888899999999999999999999976432211 1111111111111 111111122234567888
Q ss_pred HHHHHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 398 LRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQIS-QQLHGLWSAPFRITLSMVLLYQQLGVASLLGSLML 476 (1303)
Q Consensus 398 lr~~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~-~~~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~~ 476 (1303)
+...++..+|++.++++...++..+.|++.++++.|++.+++.+ ..+..++..++.+++++++++..-+..+++.++++
T Consensus 128 ~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lalv~l~~~ 207 (1466)
T PTZ00265 128 ILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCITCVF 207 (1466)
T ss_pred HHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 88889999999999999988888899999999999999998864 34555555566566555544433333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 477 VLMVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFIL 556 (1303)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~ 556 (1303)
.+++.+..++.+++++..++..+..++..+.+.|.++|+++||.|+.|+.+.+++.+..++..+...+......+...+.
T Consensus 208 pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~ 287 (1466)
T PTZ00265 208 PLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMI 287 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333345566777777777777778899999999999999999999999999998766665554444444444322222
Q ss_pred HHHh--HHhHHhhhhhhhhhCC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000746 557 NSIP--VVVTVVSFGTFTLLGG--------DLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEER 626 (1303)
Q Consensus 557 ~~~~--~~~~~~~f~~~~~~~~--------~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~ 626 (1303)
.... ..+.++++|.+.+..+ .++++.+++.+........++..+...+..+..+.+|.+||.++++.+++
T Consensus 288 ~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~ 367 (1466)
T PTZ00265 288 NGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPL 367 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 2221 2234566788777654 57888777765544444445556666788999999999999999986543
Q ss_pred hcCCCC-CCCCCCCcEEEEeeEEEeCCC--CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE---
Q 000746 627 ILMPNP-PLEPELPAVSIKNGNFSWDSK--SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV--- 700 (1303)
Q Consensus 627 ~~~~~~-~~~~~~~~i~~~~~~f~~~~~--~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~--- 700 (1303)
.+.... ...+....|+++|++|+|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+..
T Consensus 368 ~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g 447 (1466)
T PTZ00265 368 VENNDDGKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDS 447 (1466)
T ss_pred CCCCCCCccCCCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCC
Confidence 211111 111122369999999999854 36999999999999999999999999999999999999999985432
Q ss_pred ----------EcCeEEEEccCcccccccHHHHHccCCC------------------------------------------
Q 000746 701 ----------IRGTVAYVPQISWIFNATLRKNILFGSE------------------------------------------ 728 (1303)
Q Consensus 701 ----------~~~~iayv~Q~p~l~~~TireNI~~g~~------------------------------------------ 728 (1303)
+|++|+||+|+|.+|++||+|||.+|..
T Consensus 448 ~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (1466)
T PTZ00265 448 HNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSN 527 (1466)
T ss_pred cchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhccc
Confidence 1346999999999999999999999741
Q ss_pred ----------------CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-----------
Q 000746 729 ----------------FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN----------- 781 (1303)
Q Consensus 729 ----------------~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~----------- 781 (1303)
.++++++++++.+++++++..+|+|++|.+|++|.+|||||||||+||||++.
T Consensus 528 ~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpT 607 (1466)
T PTZ00265 528 TTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEAT 607 (1466)
T ss_pred ccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 34567888999999999999999999999999999999999999999999643
Q ss_pred ------------HHHhHhc--CCCEEEEEecCCCcccccCEEEEEeCC--------------------------------
Q 000746 782 ------------SCIKEEL--RGKTRILVTNQLHFLPHVDRIILVSEG-------------------------------- 815 (1303)
Q Consensus 782 ------------~~i~~~~--~~~TvilvtH~~~~l~~aD~ii~l~~G-------------------------------- 815 (1303)
+.+++.. +++|+|+||||+++++.||+|++|++|
T Consensus 608 SaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1466)
T PTZ00265 608 SSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNN 687 (1466)
T ss_pred cccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccccccccccccccccccccccccccc
Confidence 3444443 489999999999999999999999886
Q ss_pred ---------------EEEEecCHHHHHh-cchHHHHHHHHhccchhhhhhh--hcccccccc--cccC-c--ccc-ccc-
Q 000746 816 ---------------MIKEEGSFEELSK-HGRLFQKLMENAGKMEEMEERE--EKDDSINSN--QEVS-K--PVA-NRA- 870 (1303)
Q Consensus 816 ---------------~i~~~g~~~~l~~-~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~--~~~~-~--~~~-~~~- 870 (1303)
+|+|+|+|+||++ .+|.|..+++.+.........+ +........ .... . +.. ...
T Consensus 688 ~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 767 (1466)
T PTZ00265 688 NNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAYKDSERGYDPDEMNGNS 767 (1466)
T ss_pred ccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhccccccccccccccccccccccccccccccccccccccc
Confidence 5999999999998 6899999987653221110000 000000000 0000 0 000 000
Q ss_pred -ccccCCC--CCccc--cc-cccCCCcccchhhh-----hhcCccchhHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhh
Q 000746 871 -VQVNEFP--KNESY--TK-KGKRGRSVLVKQEE-----RETGIVSGSVLTRYKNALGGPWVIMILFACYLSTEVLRISS 939 (1303)
Q Consensus 871 -~~~~~~~--~~~~~--~~-~~~~~~~~~~~~e~-----~~~g~v~~~vy~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~ 939 (1303)
....+.. ..... .. ............++ ...+. ....+.+++.... ..+++.+++.++..++....
T Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 844 (1466)
T PTZ00265 768 KHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPN-NLRIVYREIFSYK--KDVTIIALSILVAGGLYPVF 844 (1466)
T ss_pred cccccccccccccccccccccchhccccchhhhhccccccccch-hHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 0000000 00000 00 00000000000000 00100 1111122221111 11222232333334444455
Q ss_pred hHHHhhhcccccCC---CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccc--CCc
Q 000746 940 STWLSFWTDQSTSK---NYNPGFYIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHT--NPI 1014 (1303)
Q Consensus 940 ~~~l~~w~~~~~~~---~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~--~~~ 1014 (1303)
++.++.+++..... ......|.+++++++++..++.+++.++..+.+.++..++|.++|++++++|++|||+ +++
T Consensus 845 ~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~ 924 (1466)
T PTZ00265 845 ALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAP 924 (1466)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCH
Confidence 55666665532111 1112345666777777778888899999999999999999999999999999999986 899
Q ss_pred chhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH-
Q 000746 1015 GRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQSTARE-----VKRL- 1088 (1303)
Q Consensus 1015 G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~~~~pl~~~~~~i~~~~~~~~r~-----l~r~- 1088 (1303)
|++++|+++|++.++..+...+..++..++.+++.++++++.+|.++++++|++++.. +.+.+..+. .++.
T Consensus 925 G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 1001 (1466)
T PTZ00265 925 GLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFM---RVFAIRARLTANKDVEKKE 1001 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999888888888888888887777778888877666555443332 222222221 1111
Q ss_pred ------------hhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH--
Q 000746 1089 ------------DSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGI-- 1154 (1303)
Q Consensus 1089 ------------~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~-- 1154 (1303)
+.+..+...+.++|+++|++|||+|+.|+++.+++.+..+...+..........+.....+.+..+
T Consensus 1002 ~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1081 (1466)
T PTZ00265 1002 INQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFIN 1081 (1466)
T ss_pred ccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122234567899999999999999999999999999888877665554443333333333332222
Q ss_pred -HHHHHHHHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCC
Q 000746 1155 -MIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRP 1233 (1303)
Q Consensus 1155 -~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~ 1233 (1303)
++++.+.+.+.. + ....+.+..++.+......++..+...+.+++.+..+.+|+.++++.+++.+...+....
T Consensus 1082 ~~~~~~G~~lv~~-g-----~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~ 1155 (1466)
T PTZ00265 1082 SFAYWFGSFLIRR-G-----TILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIR 1155 (1466)
T ss_pred HHHHHHHHHHHHc-C-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccc
Confidence 122222222221 1 122344444333333333455667778888999999999999999876543211111111
Q ss_pred -CCCCCCcceEEEEEEEEEeCCC-CCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccC
Q 000746 1234 -PPAWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVEL 1296 (1303)
Q Consensus 1234 -~~~wp~~G~I~f~nVsf~Y~~~-~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~ 1296 (1303)
+...+.+|+|+|+||+|+|+++ ..+||+|+||+|+|||+|||||+||||||||+++|+|||||
T Consensus 1156 ~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265 1156 IKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred cccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 0112356899999999999642 24799999999999999999999999999999999999999
No 9
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.6e-70 Score=643.17 Aligned_cols=520 Identities=21% Similarity=0.303 Sum_probs=417.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 321 LNNSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYI-YAFLIFVGVSFGVLTEAQYFQNVWRVGFRLR 399 (1303)
Q Consensus 321 l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 399 (1303)
+.+..++.+..+.++.++........|.++++++|.+..++......- ....+....+.++++...+.......+.++-
T Consensus 141 l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv~ 220 (716)
T KOG0058|consen 141 LLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLLQYAGERVV 220 (716)
T ss_pred HhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567778888888888889999999999999998876222111111 1111112222233333333333345666777
Q ss_pred HHHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 400 STLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQI-SQQLHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLVL 478 (1303)
Q Consensus 400 ~~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~-~~~~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~~~~ 478 (1303)
..++..+|++.++.....++++.+|++++|++.|++.+.+. ..++.....+.++.+.++.++...-+-.+++..+.+.+
T Consensus 221 ~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv~~i~~P~ 300 (716)
T KOG0058|consen 221 ARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVTLIVVPI 300 (716)
T ss_pred HHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhcH
Confidence 77777788888888888888999999999999999999874 45677777777777777655444333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 479 MVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNS 558 (1303)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~ 558 (1303)
+..+..++++..++..++.+++..+..+...|.+++|||||+|+.|+...+++.+.-++-.+..+|............+.
T Consensus 301 v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~~~~~ 380 (716)
T KOG0058|consen 301 VALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFGSTNL 380 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHhHHHH
Confidence 34445777888889999999999999999999999999999999999999999887777666666665555544333322
Q ss_pred H--hHHhHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC-CCC
Q 000746 559 I--PVVVTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPNP-PLE 635 (1303)
Q Consensus 559 ~--~~~~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~-~~~ 635 (1303)
. ...+.++.+|.+++..|.++++...+.+.+-..+..++..+...++.++++..|.+|+.++++.++..+.+.. ...
T Consensus 381 ~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~G~~~p~ 460 (716)
T KOG0058|consen 381 LGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLTGTLAPD 460 (716)
T ss_pred HHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCCCccccc
Confidence 2 2345678889999999999999999999999999999999999999999999999999999998765432211 011
Q ss_pred CCCCcEEEEeeEEEeCCCC--CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------E
Q 000746 636 PELPAVSIKNGNFSWDSKS--PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------I 701 (1303)
Q Consensus 636 ~~~~~i~~~~~~f~~~~~~--~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~ 701 (1303)
.-.+.|+|+||+|+||.++ ++|+|+||+|+|||.||+||||||||||++++|+++|+|++|.+.. +
T Consensus 461 ~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~l 540 (716)
T KOG0058|consen 461 HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYL 540 (716)
T ss_pred cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHH
Confidence 2456899999999999776 7999999999999999999999999999999999999999985421 4
Q ss_pred cCeEEEEccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH
Q 000746 702 RGTVAYVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF 780 (1303)
Q Consensus 702 ~~~iayv~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~ 780 (1303)
|++||+|.|||.||++||+|||.+|.+ .++|++.++.+.++.+++|..+|+|++|.|||+|..||||||||||||||++
T Consensus 541 r~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALl 620 (716)
T KOG0058|consen 541 RRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALL 620 (716)
T ss_pred HHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHh
Confidence 678999999999999999999999986 6899999999999999999999999999999999999999999999999954
Q ss_pred -----------------------HHHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcc-hHHHHH
Q 000746 781 -----------------------NSCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHG-RLFQKL 836 (1303)
Q Consensus 781 -----------------------~~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~-~~~~~l 836 (1303)
++++++..+++|||+|+||+++++.||+|+++++|+++|.|+|+||++++ +.|.++
T Consensus 621 r~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~gly~~L 700 (716)
T KOG0058|consen 621 RNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKPNGLYAKL 700 (716)
T ss_pred cCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhCcccHHHHH
Confidence 34566777899999999999999999999999999999999999999887 799999
Q ss_pred HHHh
Q 000746 837 MENA 840 (1303)
Q Consensus 837 ~~~~ 840 (1303)
++.+
T Consensus 701 v~~q 704 (716)
T KOG0058|consen 701 VQRQ 704 (716)
T ss_pred HHHh
Confidence 8754
No 10
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=1.9e-65 Score=632.09 Aligned_cols=520 Identities=23% Similarity=0.335 Sum_probs=418.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 318 LRALNNSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFR 397 (1303)
Q Consensus 318 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (1303)
++-..+.+++.+.-.++..++..++.++.|++.+.++|.+-.......-..+++.+.+..++..+....-.+....++.|
T Consensus 145 f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~r 224 (709)
T COG2274 145 FIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKR 224 (709)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666777778888999999999999999999886544332222223322233333322221111223478889
Q ss_pred HHHHHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 398 LRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQ--LHGLWSAPFRITLSMVLLYQQLGVASLLGSLM 475 (1303)
Q Consensus 398 lr~~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~--~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~ 475 (1303)
+...+...+|+|.+++|...++++++|++++|+ +|.+.|.+++.. +..+...++.++...++. ..-+..++++++.
T Consensus 225 ld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~-~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~-~ys~~L~li~l~~ 302 (709)
T COG2274 225 LDLELSGRFFRHLLRLPLSYFEKRSVGEIISRV-RELEQIREFLTGSILTLIIDLLFALIFLAVMF-LYSWKLTLIVLAA 302 (709)
T ss_pred HhHHHHHHHHHHHHcCcHHHccCCChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 999999999999999999999999999999997 789999987542 233444444444433333 3344444554444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 476 LVLMVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFI 555 (1303)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~ 555 (1303)
+++.+.+..++.+..++..++.++...++.+...|.++|+++||..+.|+.+..++++.-.+..+...+..........+
T Consensus 303 ~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 382 (709)
T COG2274 303 IPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTI 382 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 44444455667788888888889999999999999999999999999999999999998888887776666665555544
Q ss_pred HHHHhHH--hHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--
Q 000746 556 LNSIPVV--VTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPN-- 631 (1303)
Q Consensus 556 ~~~~~~~--~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~-- 631 (1303)
......+ +.++++|++.++++.+|.|.+++..++...+..|+..+.+.+.++.+++.+.+|+.++++.+++.+.+.
T Consensus 383 ~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~~ 462 (709)
T COG2274 383 KSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTL 462 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccc
Confidence 4433322 456889999999999999999999999999999999999999999999999999999999876543322
Q ss_pred CCCCCCCCcEEEEeeEEEeCCCC-CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----------
Q 000746 632 PPLEPELPAVSIKNGNFSWDSKS-PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV---------- 700 (1303)
Q Consensus 632 ~~~~~~~~~i~~~~~~f~~~~~~-~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~---------- 700 (1303)
....+..+.|+++|++|+|+.++ ++|+|+|++|++||+++|+|+||||||||+|+|+|+++|.+|.+..
T Consensus 463 ~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~ 542 (709)
T COG2274 463 IHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDL 542 (709)
T ss_pred ccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCH
Confidence 12223456899999999998774 5999999999999999999999999999999999999999985431
Q ss_pred --EcCeEEEEccCcccccccHHHHHccCCCC-ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHH
Q 000746 701 --IRGTVAYVPQISWIFNATLRKNILFGSEF-DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMAR 777 (1303)
Q Consensus 701 --~~~~iayv~Q~p~l~~~TireNI~~g~~~-~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLAR 777 (1303)
+|++|+||+||+.+|+|||||||.+++|. ++|+..++++.++.++++..+|.|++|.|||+|.+|||||||||+|||
T Consensus 543 ~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalAR 622 (709)
T COG2274 543 ASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALAR 622 (709)
T ss_pred HHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999999974 569999999999999999999999999999999999999999999999
Q ss_pred HHHH-----------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchHHH
Q 000746 778 AVFN-----------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQ 834 (1303)
Q Consensus 778 Al~~-----------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~ 834 (1303)
|++. +.+.+..+++|+|+||||+++++.||+|+||++|+|+++|+|+|+++.+|.|.
T Consensus 623 aLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~~g~y~ 702 (709)
T COG2274 623 ALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQGGLYA 702 (709)
T ss_pred HhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHhcChHH
Confidence 9542 23455567999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 000746 835 KLMEN 839 (1303)
Q Consensus 835 ~l~~~ 839 (1303)
+++..
T Consensus 703 ~l~~~ 707 (709)
T COG2274 703 RLYQQ 707 (709)
T ss_pred HHHhc
Confidence 88754
No 11
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.3e-63 Score=628.26 Aligned_cols=517 Identities=21% Similarity=0.255 Sum_probs=381.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 319 RALNNSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRG-DPAWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFR 397 (1303)
Q Consensus 319 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (1303)
+...+.+++.++.+.++.++..++..+.|++++.++|.+..+ ......+.+..++++..++..++.....+...+.+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (588)
T PRK11174 14 KQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGFKAGQH 93 (588)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566778888888899999999999999999999976421 1111111122222222222222222222233467888
Q ss_pred HHHHHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 398 LRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQ-QLHGLWSAPFRITLSMVLLYQQLGVASLLGSLML 476 (1303)
Q Consensus 398 lr~~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~~ 476 (1303)
+...++..+|+|.++++....++.++|++++++++|++++++.+. .+..++...+.+++++++++..-+..+++.++.+
T Consensus 94 ~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~ 173 (588)
T PRK11174 94 IRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLILLGTA 173 (588)
T ss_pred HHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988899999999999999999998653 4555555544444444333322222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Q 000746 477 VLMVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFL----SAFN 552 (1303)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~----~~~~ 552 (1303)
++...+...+.++.++..++.++..++..+.+.|.++|+++||.|++|+.+.+++++..++..+...+.... ..+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (588)
T PRK11174 174 PLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLSSAVL 253 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222345667777888888888899999999999999999999999999988866555433332222222 2222
Q ss_pred HHHHHHHhHHhHHhhhhhhhhhCCCCCHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 553 SFILNSIPVVVTVVSFGTFTLLGGDLTPA---------RAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLA 623 (1303)
Q Consensus 553 ~~~~~~~~~~~~~~~f~~~~~~~~~l~~~---------~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~ 623 (1303)
.++... ..+ .++.++++.+. +.++.| .++.++.+...+..|+..++..+..+.++.++.+|+.++++.
T Consensus 254 ~~~~~~-~~~-~~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~ 330 (588)
T PRK11174 254 EFFASI-SIA-LVAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFLET 330 (588)
T ss_pred HHHHHH-HHH-HHHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 222111 111 12223333333 444444 344555666778899999999999999999999999999976
Q ss_pred HhhhcCCCC-CCC-CCCCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE
Q 000746 624 EERILMPNP-PLE-PELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI 701 (1303)
Q Consensus 624 ~~~~~~~~~-~~~-~~~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~ 701 (1303)
+++...... +.. +....|+++|++|.|++++++|+|+||+|++|++++|+||||||||||+++|+|++ |++|. +.+
T Consensus 331 ~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~-I~i 408 (588)
T PRK11174 331 PLAHPQQGEKELASNDPVTIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGS-LKI 408 (588)
T ss_pred CCcccCCCccccCCCCCceEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcE-EEE
Confidence 543211111 111 12346999999987765668999999999999999999999999999999999999 88874 443
Q ss_pred -------------cCeEEEEccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCch
Q 000746 702 -------------RGTVAYVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISG 767 (1303)
Q Consensus 702 -------------~~~iayv~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSG 767 (1303)
|++|+||||+|+||+|||||||++|++ +++++++++++.|+++++++.+|+|++|.|||+|.+|||
T Consensus 409 ~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSG 488 (588)
T PRK11174 409 NGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSV 488 (588)
T ss_pred CCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCH
Confidence 347999999999999999999999975 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHH
Q 000746 768 GQKQRVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFE 824 (1303)
Q Consensus 768 GQkQRiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~ 824 (1303)
||||||+||||+++ +.+.+..+++|+|+||||++.++.||+|++|++|+++++|+|+
T Consensus 489 GQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~ 568 (588)
T PRK11174 489 GQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYA 568 (588)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHH
Confidence 99999999999653 3455566899999999999999999999999999999999999
Q ss_pred HHHhcchHHHHHHHHh
Q 000746 825 ELSKHGRLFQKLMENA 840 (1303)
Q Consensus 825 ~l~~~~~~~~~l~~~~ 840 (1303)
|++++++.|+++++.+
T Consensus 569 eL~~~~~~y~~l~~~q 584 (588)
T PRK11174 569 ELSQAGGLFATLLAHR 584 (588)
T ss_pred HHHhcchHHHHHHHHh
Confidence 9999999999987643
No 12
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=3.2e-62 Score=624.87 Aligned_cols=519 Identities=19% Similarity=0.254 Sum_probs=400.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 317 LLRALNNSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGF 396 (1303)
Q Consensus 317 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (1303)
+++..++.+++.++...++.++..++.++.|++++.++|.+.........+.+++.+.+..++..+......+...+.+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (686)
T TIGR03797 126 LLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLET 205 (686)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556777788888889999999999999999999987543221111112222222222222222111223446788
Q ss_pred HHHHHHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 397 RLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQ-LHG-LWSAPFRITLSMVLLYQQLGVASLLGSL 474 (1303)
Q Consensus 397 ~lr~~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~-~~~-~~~~~~~i~~~~~~l~~~lg~~~l~~~~ 474 (1303)
++...++..+|+|.++++...+++.++|+++++++ |++.+++.+.. +.. +...++ +++++++++..-++.+++.++
T Consensus 206 ~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~li~l~ 283 (686)
T TIGR03797 206 RMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIF-ALLNLGLMFYYSWKLALVAVA 283 (686)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999998888999999999996 78888876432 222 333333 333344444333444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 475 MLVLMVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSF 554 (1303)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~ 554 (1303)
++++.+.+..++.++.++..++.++..+++.+.+.|.++|+++||.+|.|+.+.+++++..++..+...+......+...
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (686)
T TIGR03797 284 LALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTV 363 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444566677778888888888899999999999999999999999999999988777766665555554444433
Q ss_pred HHHHHhHH--hHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 000746 555 ILNSIPVV--VTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPNP 632 (1303)
Q Consensus 555 ~~~~~~~~--~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~ 632 (1303)
+......+ +.++.+|++.+..|.++.|.+++...++..+..|+..++..+..+.++..+++|+.++++.+++......
T Consensus 364 ~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~ 443 (686)
T TIGR03797 364 FNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAKT 443 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcC
Confidence 33332222 2345667788888999999999999999999999999999999999999999999999976543221111
Q ss_pred CCCCCCCcEEEEeeEEEeCC-CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-----------
Q 000746 633 PLEPELPAVSIKNGNFSWDS-KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----------- 700 (1303)
Q Consensus 633 ~~~~~~~~i~~~~~~f~~~~-~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----------- 700 (1303)
......+.|+++|++|+|++ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+..
T Consensus 444 ~~~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~ 523 (686)
T TIGR03797 444 DPGKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQ 523 (686)
T ss_pred CCCCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHH
Confidence 11112346999999999964 457999999999999999999999999999999999999999985321
Q ss_pred -EcCeEEEEccCcccccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHH
Q 000746 701 -IRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAV 779 (1303)
Q Consensus 701 -~~~~iayv~Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl 779 (1303)
+|++|+||||+|++|+|||||||.+|++.++++++++++.|+++++++.+|+|++|.+||+|.+|||||||||+||||+
T Consensus 524 ~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAl 603 (686)
T TIGR03797 524 AVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARAL 603 (686)
T ss_pred HHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 3468999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred HHH-----------------------HHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchHHHHH
Q 000746 780 FNS-----------------------CIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKL 836 (1303)
Q Consensus 780 ~~~-----------------------~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~~l 836 (1303)
+++ .+++. ++|+|+||||++.++.||+|++|++|+|+++|+|+|++++++.|+++
T Consensus 604 l~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~~~~y~~l 681 (686)
T TIGR03797 604 VRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREGLFAQL 681 (686)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhCCcHHHHH
Confidence 531 22222 68999999999999999999999999999999999999999999988
Q ss_pred HHH
Q 000746 837 MEN 839 (1303)
Q Consensus 837 ~~~ 839 (1303)
++.
T Consensus 682 ~~~ 684 (686)
T TIGR03797 682 ARR 684 (686)
T ss_pred HHh
Confidence 753
No 13
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=2.6e-61 Score=615.30 Aligned_cols=512 Identities=18% Similarity=0.246 Sum_probs=389.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 323 NSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDP-AWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFRLRST 401 (1303)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~ 401 (1303)
+..++.+....++.++..++..+.|++++.++|.+..... ........+ +.+..+...++.........+.+.++...
T Consensus 157 ~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 235 (711)
T TIGR00958 157 GRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFF-MCLLSIASSVSAGLRGGSFNYTMARINLR 235 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455567777788888999999999999999998864322 111111111 11111111111111111123456677778
Q ss_pred HHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 402 LVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQIS-QQLHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLVLMV 480 (1303)
Q Consensus 402 L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~-~~~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~~~~~~ 480 (1303)
++..+|++.++.+...+++.++|+++|++++|++.+++.+ ..+..++...+.+++++++++..-+..+++.++.+++..
T Consensus 236 lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~~ 315 (711)
T TIGR00958 236 IREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVF 315 (711)
T ss_pred HHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 8888999999999888888999999999999999998754 345555555555555555444333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000746 481 PLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIP 560 (1303)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~ 560 (1303)
.+..++.++.++..++.++..++..+.+.|.++|+++||.|++|+.+.+++++..++..+..++................
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (711)
T TIGR00958 316 LAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLG 395 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777777888888888999999999999999999999999888887777655544444333332222222211
Q ss_pred --HHhHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC-CCCCC
Q 000746 561 --VVVTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPNP-PLEPE 637 (1303)
Q Consensus 561 --~~~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~-~~~~~ 637 (1303)
..+.++.+|.+.+..|.+++|.+++.+.+...+..|+..++..+..+.++.++.+|+.++++.+++...+.. ...+.
T Consensus 396 ~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~ 475 (711)
T TIGR00958 396 MLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAPLNL 475 (711)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Confidence 123345667788888999999999999999999999999999999999999999999999976543221111 11122
Q ss_pred CCcEEEEeeEEEeCCC--CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-------------c
Q 000746 638 LPAVSIKNGNFSWDSK--SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-------------R 702 (1303)
Q Consensus 638 ~~~i~~~~~~f~~~~~--~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~-------------~ 702 (1303)
.+.|+++|++|+|+++ +++|+|+||+|+|||+++|+||||||||||+++|+|+++|++|. +.+ +
T Consensus 476 ~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~-I~idg~~i~~~~~~~lr 554 (711)
T TIGR00958 476 EGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQ-VLLDGVPLVQYDHHYLH 554 (711)
T ss_pred CCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCE-EEECCEEHHhcCHHHHH
Confidence 3569999999999753 47999999999999999999999999999999999999999874 433 4
Q ss_pred CeEEEEccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH
Q 000746 703 GTVAYVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN 781 (1303)
Q Consensus 703 ~~iayv~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~ 781 (1303)
++|+||||+|++|++||||||.+|.+ .++++++++++.++++++++.+|+|+||.+||+|.+|||||||||+||||+++
T Consensus 555 ~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~ 634 (711)
T TIGR00958 555 RQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVR 634 (711)
T ss_pred hhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhc
Confidence 57999999999999999999999975 68899999999999999999999999999999999999999999999999754
Q ss_pred H-------------------HHhH--hcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchHHHHH
Q 000746 782 S-------------------CIKE--ELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKL 836 (1303)
Q Consensus 782 ~-------------------~i~~--~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~~l 836 (1303)
+ .+.+ ..+++|+|+||||++.++.||+|++|++|+|+++|+|+||+++++.|+++
T Consensus 635 ~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~~~y~~l 710 (711)
T TIGR00958 635 KPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYKHL 710 (711)
T ss_pred CCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCCCchHhc
Confidence 2 2222 23689999999999999999999999999999999999999988888765
No 14
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=3.9e-61 Score=617.76 Aligned_cols=517 Identities=20% Similarity=0.250 Sum_probs=399.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 320 ALNNSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFRLR 399 (1303)
Q Consensus 320 ~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 399 (1303)
..++.+++.++..++..++..++.++.|++++.++|.+.........+.+++.+++..++..+......+...+.+.++.
T Consensus 147 ~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (710)
T TIGR03796 147 RRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIKLA 226 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677777888888899999999999999976543222111122222222222222222111223456788899
Q ss_pred HHHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 400 STLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQ-QLHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLVL 478 (1303)
Q Consensus 400 ~~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~~~~ 478 (1303)
..++..+|+|.++++...+++.++|+++++++.| +.+.+++. .+..++...+.+++.+++++..-++.+++.++.+++
T Consensus 227 ~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~ 305 (710)
T TIGR03796 227 VGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAI 305 (710)
T ss_pred HHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888899999999999888 67877543 334444444444444444444334444443333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 479 MVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNS 558 (1303)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~ 558 (1303)
.+.+..++.++.++..++.++..+++.+.+.|.++|+++||.+|+|+.+.+++++..+++.+...+......+...+...
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (710)
T TIGR03796 306 NVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTL 385 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444566677777788888888899999999999999999999999999999988887777666555544443333332
Q ss_pred HhH--HhHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-----
Q 000746 559 IPV--VVTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPN----- 631 (1303)
Q Consensus 559 ~~~--~~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~----- 631 (1303)
... .+.++++|++.+..|.++.|.+++...++..+..|+..+...+..+.++..+++|+.++++.+++.....
T Consensus 386 i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~ 465 (710)
T TIGR03796 386 LTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPA 465 (710)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccc
Confidence 222 2345667888888999999999999999999999999999999999999999999999997654322111
Q ss_pred --CCC-CCCCCcEEEEeeEEEeCCC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-------
Q 000746 632 --PPL-EPELPAVSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------- 700 (1303)
Q Consensus 632 --~~~-~~~~~~i~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------- 700 (1303)
... ....+.|+++|++|+|++. +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+..
T Consensus 466 ~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~ 545 (710)
T TIGR03796 466 AGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREE 545 (710)
T ss_pred cccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHH
Confidence 000 1123469999999999853 57999999999999999999999999999999999999999975322
Q ss_pred -----EcCeEEEEccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHH
Q 000746 701 -----IRGTVAYVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVS 774 (1303)
Q Consensus 701 -----~~~~iayv~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRia 774 (1303)
+|++|+||||+|++|+|||||||.++++ .++++++++++.++++++++.+|+|++|.+||+|.+|||||||||+
T Consensus 546 ~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRia 625 (710)
T TIGR03796 546 IPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLE 625 (710)
T ss_pred CCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHH
Confidence 3568999999999999999999998874 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-------------------HHhHhc--CCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchHH
Q 000746 775 MARAVFNS-------------------CIKEEL--RGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLF 833 (1303)
Q Consensus 775 LARAl~~~-------------------~i~~~~--~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~ 833 (1303)
||||++++ .+.+.+ .++|+|+||||++.++.||+|++|++|+|+++|+|+|++++++.|
T Consensus 626 LARall~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~~~~y 705 (710)
T TIGR03796 626 IARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVGGAY 705 (710)
T ss_pred HHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHcCCcH
Confidence 99997642 111111 589999999999999999999999999999999999999999888
Q ss_pred HHHH
Q 000746 834 QKLM 837 (1303)
Q Consensus 834 ~~l~ 837 (1303)
++++
T Consensus 706 ~~l~ 709 (710)
T TIGR03796 706 ARLI 709 (710)
T ss_pred HHHh
Confidence 8875
No 15
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=5.9e-61 Score=615.29 Aligned_cols=516 Identities=22% Similarity=0.303 Sum_probs=392.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 321 LNNSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFRLRS 400 (1303)
Q Consensus 321 l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 400 (1303)
..+.+++.++...+..++..++.++.|++++.++|.+..+......+.+++.+++..++..+......+...+.+.++..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (708)
T TIGR01193 150 LITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRLSI 229 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777778888889999999999999999875433221111122222222222222221111223467788888
Q ss_pred HHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 401 TLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQ-QLHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLVLM 479 (1303)
Q Consensus 401 ~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~~~~~ 479 (1303)
.++..+|+|.++++...+++.++|+++++++ |++.+.+... .....+...+.+++.+++++..-+..+++.++.+++.
T Consensus 230 ~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~ 308 (708)
T TIGR01193 230 DIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIPVY 308 (708)
T ss_pred HHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9999999999999999888999999999997 8998887543 2222222222233333333332233333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 480 VPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSI 559 (1303)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~ 559 (1303)
+.+..++.++.++..++.++..+++.+.+.|.++|+++||.+|+|+.+.+++++..++..+...+..........+....
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (708)
T TIGR01193 309 AVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVT 388 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345666777888888888899999999999999999999999999999988776665555444433333322222222
Q ss_pred h--HHhHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CCCC
Q 000746 560 P--VVVTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPN--PPLE 635 (1303)
Q Consensus 560 ~--~~~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~--~~~~ 635 (1303)
. ..+.++++|++.+..|.+|+|.+++...+...+..|+..+...+..+.+++++.+|+.++++.+++..... .+..
T Consensus 389 ~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~ 468 (708)
T TIGR01193 389 KLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELN 468 (708)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCC
Confidence 1 12345667888888999999999999999999999999999999999999999999999997654322111 1111
Q ss_pred CCCCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcC
Q 000746 636 PELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRG 703 (1303)
Q Consensus 636 ~~~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~ 703 (1303)
...+.|+++|++|+|++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+.. +|+
T Consensus 469 ~~~~~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~ 548 (708)
T TIGR01193 469 NLNGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQ 548 (708)
T ss_pred CCCCcEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHH
Confidence 22357999999999986668999999999999999999999999999999999999999974321 245
Q ss_pred eEEEEccCcccccccHHHHHccCC--CCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH
Q 000746 704 TVAYVPQISWIFNATLRKNILFGS--EFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN 781 (1303)
Q Consensus 704 ~iayv~Q~p~l~~~TireNI~~g~--~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~ 781 (1303)
+|+||||+|++|+|||||||.+|. +.++++++++++.++++++++.+|+|++|.|||+|.+|||||||||+||||+++
T Consensus 549 ~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~ 628 (708)
T TIGR01193 549 FINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLT 628 (708)
T ss_pred heEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhh
Confidence 799999999999999999999983 478999999999999999999999999999999999999999999999999653
Q ss_pred -----------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchHHHHHHH
Q 000746 782 -----------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLME 838 (1303)
Q Consensus 782 -----------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~ 838 (1303)
+.+.+ ++++|+|+||||++.+..||+|++|++|+++++|+|+|++++++.|+++++
T Consensus 629 ~p~iliLDE~Ts~LD~~te~~i~~~L~~-~~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~~~~y~~l~~ 707 (708)
T TIGR01193 629 DSKVLILDESTSNLDTITEKKIVNNLLN-LQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNGFYASLIH 707 (708)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHH-hcCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhcCCcHHHHhh
Confidence 23333 368999999999999999999999999999999999999998899988764
No 16
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.2e-61 Score=597.11 Aligned_cols=511 Identities=20% Similarity=0.304 Sum_probs=388.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc--h-HHHHHH-HHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 000746 323 NSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPA--W-IGYIYA-FLIFVGVSFGVL-TEAQYFQNVWRVGFR 397 (1303)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~--~-~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 397 (1303)
+..|+.++.+.+..++.+...++..+++..+++.+...++. . ....++ +.+.+++.-... ..++|++. .++.+
T Consensus 660 ~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f~--~~ge~ 737 (1228)
T KOG0055|consen 660 KPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQHYFFG--IAGEK 737 (1228)
T ss_pred cchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 33567778888889999999988889999999877643322 1 111122 222222221111 22233332 45566
Q ss_pred HHHHHHHHHHHHHHcCCccccc--CCChHHHHHHHHHHHHHHHHHHH-HHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 000746 398 LRSTLVAAIFRKTLRLTHEARK--GFPSGKVTNMITTDANALQQISQ-QLHGLW----SAPFRITLSMVLLYQQLGVASL 470 (1303)
Q Consensus 398 lr~~L~~~i~~k~l~l~~~~~~--~~~~g~i~nl~s~Dv~~i~~~~~-~~~~~~----~~~~~i~~~~~~l~~~lg~~~l 470 (1303)
+-..++...|++.++.+..+++ +++ |.+.+|+.+|...++.... .+..++ .....+++++++-|+ +++.
T Consensus 738 Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~-lalv-- 813 (1228)
T KOG0055|consen 738 LTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWR-LALV-- 813 (1228)
T ss_pred HHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--
Confidence 6666666777777776665543 345 9999999999999887543 233333 223334444444443 3332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 471 LGSLMLVLMVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSA 550 (1303)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~ 550 (1303)
++.+..++........+.+....++..+..++..+...|.+.+||||+.++.|+++.+.+.+..++-.+...+...+.+
T Consensus 814 -~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~i~g 892 (1228)
T KOG0055|consen 814 -VLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGLISG 892 (1228)
T ss_pred -HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233333333334445666777778888889999999999999999999999999999988766665555555555555
Q ss_pred HHHHHHHHHhHH--hHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 000746 551 FNSFILNSIPVV--VTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERIL 628 (1303)
Q Consensus 551 ~~~~~~~~~~~~--~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~ 628 (1303)
+...+.++...+ +...+||.+++..+.+++..+|.++..+..-...+.+.....+.+..++.|..+|.++++.++..+
T Consensus 893 l~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~ 972 (1228)
T KOG0055|consen 893 LGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKPTID 972 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCC
Confidence 544444443333 345667888888999999999998887777777778888889999999999999999999766433
Q ss_pred CCCCC---CCCCCCcEEEEeeEEEeCCCC--CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE---
Q 000746 629 MPNPP---LEPELPAVSIKNGNFSWDSKS--PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV--- 700 (1303)
Q Consensus 629 ~~~~~---~~~~~~~i~~~~~~f~~~~~~--~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~--- 700 (1303)
.+++. .++-.+.|+++||+|+||.++ ++|+|+||+|++|+.+|+||||||||||.+.+|.++|+|++|.+..
T Consensus 973 ~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~ 1052 (1228)
T KOG0055|consen 973 PDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGV 1052 (1228)
T ss_pred CCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCc
Confidence 22111 112345799999999999765 7999999999999999999999999999999999999999975421
Q ss_pred ---------EcCeEEEEccCcccccccHHHHHccCC-CCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHH
Q 000746 701 ---------IRGTVAYVPQISWIFNATLRKNILFGS-EFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQK 770 (1303)
Q Consensus 701 ---------~~~~iayv~Q~p~l~~~TireNI~~g~-~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQk 770 (1303)
+|++||.|+|+|.||++||||||++|. ..+++++.++++.++.+++|..||+|+||.|||+|.+||||||
T Consensus 1053 dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQK 1132 (1228)
T KOG0055|consen 1053 DIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQK 1132 (1228)
T ss_pred ccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHH
Confidence 467899999999999999999999994 4699999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-----------------------HHHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHH
Q 000746 771 QRVSMARAVF-----------------------NSCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELS 827 (1303)
Q Consensus 771 QRiaLARAl~-----------------------~~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~ 827 (1303)
||||||||++ ++++++...|+|+|+|+||++++++||.|+|+++|+|+|+|+|++|+
T Consensus 1133 QRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~ 1212 (1228)
T KOG0055|consen 1133 QRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELL 1212 (1228)
T ss_pred HHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEecccHHHHH
Confidence 9999999954 45677777899999999999999999999999999999999999999
Q ss_pred hcchHHHHHHHHh
Q 000746 828 KHGRLFQKLMENA 840 (1303)
Q Consensus 828 ~~~~~~~~l~~~~ 840 (1303)
+.+|.|.+|++.+
T Consensus 1213 ~~~G~Y~~Lv~~q 1225 (1228)
T KOG0055|consen 1213 AKRGIYFRLVQLQ 1225 (1228)
T ss_pred hCCCchHHHhhhc
Confidence 9999999998654
No 17
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=1.3e-60 Score=610.67 Aligned_cols=509 Identities=23% Similarity=0.334 Sum_probs=394.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 318 LRALNNSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFR 397 (1303)
Q Consensus 318 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (1303)
++...+.+++.+....++.++..++.++.|++++.++|.+.........+.+++.+++..++..+......+...+.+.+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (694)
T TIGR03375 138 FWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQAFETLWVLAIGVALAIVFDFVLKTLRSYFLDVAGKK 217 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667777777888888899999999999999999875332221111122222222222222211111223467888
Q ss_pred HHHHHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 398 LRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQ-LH-GLWSAPFRITLSMVLLYQQLGVASLLGSLM 475 (1303)
Q Consensus 398 lr~~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~-~~-~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~ 475 (1303)
+...++..+|+|.++++... .+.++|++++++ +|++.+++.+.. +. .+...++.+ +.+++++..-+..+++.++.
T Consensus 218 ~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~l~li~l~~ 294 (694)
T TIGR03375 218 ADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFAL-LFLLVIAIIGGPLVWVPLVA 294 (694)
T ss_pred HHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999876 677899999998 799999986532 22 233333333 33333333334444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 476 LVLMVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFI 555 (1303)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~ 555 (1303)
+++.+.+..++.++.++..++..+..+++.+.+.|.++|+++||.+++|+.+.+++++..++..+...+..........+
T Consensus 295 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (694)
T TIGR03375 295 IPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNF 374 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445667778888888889999999999999999999999999999999999988887776666655555444333
Q ss_pred HHHHhH--HhHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC-
Q 000746 556 LNSIPV--VVTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPNP- 632 (1303)
Q Consensus 556 ~~~~~~--~~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~- 632 (1303)
...... .+.++++|++.+..|.+++|.+++.+.++..+..|+..++..+..+.+++++.+|+.++++.+++......
T Consensus 375 ~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~ 454 (694)
T TIGR03375 375 AQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTRF 454 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCC
Confidence 332222 23356678888889999999999999999999999999999999999999999999999987653221111
Q ss_pred -CCCCCCCcEEEEeeEEEeCCC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----------
Q 000746 633 -PLEPELPAVSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV---------- 700 (1303)
Q Consensus 633 -~~~~~~~~i~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~---------- 700 (1303)
+.....+.|+++|++|+|+++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+..
T Consensus 455 ~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~ 534 (694)
T TIGR03375 455 LHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDP 534 (694)
T ss_pred CCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCH
Confidence 111223569999999999753 47999999999999999999999999999999999999999974321
Q ss_pred --EcCeEEEEccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHH
Q 000746 701 --IRGTVAYVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMAR 777 (1303)
Q Consensus 701 --~~~~iayv~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLAR 777 (1303)
+|++|+||||+|++|+|||+|||.++++ .++++++++++.++++++++.+|+|++|.+||+|.+|||||||||+|||
T Consensus 535 ~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalAR 614 (694)
T TIGR03375 535 ADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALAR 614 (694)
T ss_pred HHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHH
Confidence 2458999999999999999999999986 8999999999999999999999999999999999999999999999999
Q ss_pred HHHH-----------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 778 AVFN-----------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 778 Al~~-----------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
|+++ +.+.+..+++|+|+||||+++++.||+|++|++|+++|+|+|+||+++
T Consensus 615 all~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 615 ALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 9653 345555678999999999999999999999999999999999999753
No 18
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=3.6e-60 Score=596.88 Aligned_cols=519 Identities=20% Similarity=0.236 Sum_probs=393.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 321 LNNSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFRLRS 400 (1303)
Q Consensus 321 l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 400 (1303)
.++.+++.++...+..++..++..+.|++++.+++.+..+........+++.+++..++..+......+...+.+.++..
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 98 (582)
T PRK11176 19 TIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKADRSVLKWMPLVVIGLMILRGITSFISSYCISWVSGKVVM 98 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666777777777888999999998765432211111111111111111111111111123456777888
Q ss_pred HHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 401 TLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQIS-QQLHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLVLM 479 (1303)
Q Consensus 401 ~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~-~~~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~~~~~ 479 (1303)
.++..+|++.++++.....+.+.|++++++++|++.+.+.. ..+..++..++.+++.+++++..-++.+++.++++++.
T Consensus 99 ~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~l~ 178 (582)
T PRK11176 99 TMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAPIV 178 (582)
T ss_pred HHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999998889999999999999999998754 34455555555555555544443333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 480 VPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSI 559 (1303)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~ 559 (1303)
+.+..+..++.++..++.++..++..+...|.++|+++||.++.|+.+.+++++..++..+...+......+...+....
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (582)
T PRK11176 179 SIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLI 258 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345566777777788888888899999999999999999999999999998777765555444444433333322222
Q ss_pred h--HHhHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 000746 560 P--VVVTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPNPPLEPE 637 (1303)
Q Consensus 560 ~--~~~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~ 637 (1303)
. ..+.++.++.+.+..|.+++|.+.+.+.++..+..|+..+...+..+.+++.+++|+.++++.+++.........+.
T Consensus 259 ~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~ 338 (582)
T PRK11176 259 ASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGKRVIERA 338 (582)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCcCCCCC
Confidence 2 12234556677777889999999888888888999999999999999999999999999987654321111111122
Q ss_pred CCcEEEEeeEEEeCCC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcCe
Q 000746 638 LPAVSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRGT 704 (1303)
Q Consensus 638 ~~~i~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~~ 704 (1303)
.+.|+++|++|+|+++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+.. +++.
T Consensus 339 ~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 418 (582)
T PRK11176 339 KGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQ 418 (582)
T ss_pred CCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhh
Confidence 3469999999999764 57999999999999999999999999999999999999999874321 2457
Q ss_pred EEEEccCcccccccHHHHHccCCC--CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-
Q 000746 705 VAYVPQISWIFNATLRKNILFGSE--FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN- 781 (1303)
Q Consensus 705 iayv~Q~p~l~~~TireNI~~g~~--~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~- 781 (1303)
|+||||+|++|++||||||.+|++ +++++++++++.++++++++.+|+|++|.+||+|.+|||||||||+||||+++
T Consensus 419 i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~ 498 (582)
T PRK11176 419 VALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRD 498 (582)
T ss_pred ceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhC
Confidence 999999999999999999999863 78999999999999999999999999999999999999999999999999764
Q ss_pred ----------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchHHHHHHHH
Q 000746 782 ----------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLMEN 839 (1303)
Q Consensus 782 ----------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~ 839 (1303)
+.+.+..+++|+|+||||++.++.||+|++|++|+++|.|+|++++++++.|+++++.
T Consensus 499 ~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~~~y~~l~~~ 578 (582)
T PRK11176 499 SPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNGVYAQLHKM 578 (582)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhCCChHHHHHHH
Confidence 2344444789999999999999999999999999999999999999999999998764
No 19
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-59 Score=545.00 Aligned_cols=502 Identities=23% Similarity=0.352 Sum_probs=384.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 332 GGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFRLRSTLVAAIFRKTL 411 (1303)
Q Consensus 332 ~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~L~~~i~~k~l 411 (1303)
..++.++..+....+-.++...++.+-.+......+.+++.++++.++..+....--...++.+.++|..++..+++|..
T Consensus 5 ~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~ 84 (559)
T COG4988 5 SALLAVLSGIAIIAQAALLADILTKLIEGQLFQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLA 84 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666777777777777766554432111222333333333333333222334578899999999999999999
Q ss_pred cCCcccccCCChHHHHHHHHHHHHHHHHHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 000746 412 RLTHEARKGFPSGKVTNMITTDANALQQISQ-QLHGL---WSAPFRITLSMVLLYQQLGVASLLGSLMLVLMVPL-QTFI 486 (1303)
Q Consensus 412 ~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~-~~~~~---~~~~~~i~~~~~~l~~~lg~~~l~~~~~~~~~~~~-~~~~ 486 (1303)
++.+...++.++|++.++++..+|.++.++. +++.. ...|+.++++++.+.+..+...++...+ +|+ ...+
T Consensus 85 ~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~Pl----IPlfMilv 160 (559)
T COG4988 85 KLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPL----IPLFMILV 160 (559)
T ss_pred hCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHH
Confidence 9999888889999999999999999998653 33333 3445555555555555444333322222 222 2345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000746 487 ISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQS----IRDDELSWFRKAQFLSAFNSFILNSIPVV 562 (1303)
Q Consensus 487 ~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~----~r~~e~~~~~~~~~~~~~~~~~~~~~~~~ 562 (1303)
+.+.++..+++++....-.++.-|.++|+.|+|.|+..+...+++.+ .|+..++.+|-.........++.... +.
T Consensus 161 g~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~ls-iA 239 (559)
T COG4988 161 GLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLS-IA 239 (559)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 56677777888888888889999999999999999998887777754 45555555444433333444433322 22
Q ss_pred hHHhhhhhhhhhC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC-CCCCCC-
Q 000746 563 VTVVSFGTFTLLG-GDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPNPP-LEPELP- 639 (1303)
Q Consensus 563 ~~~~~f~~~~~~~-~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~-~~~~~~- 639 (1303)
..++.+ .+.+.+ |+++....+.++.+..-+..|++.+...++.-.++..+.+++..|++.+........+ .....+
T Consensus 240 lvAv~~-g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~ 318 (559)
T COG4988 240 LVAVYI-GFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPP 318 (559)
T ss_pred HHHHHH-HHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCC
Confidence 222333 344456 7999999999999999999999999999999999999999999999877653322211 112223
Q ss_pred -cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcCeEE
Q 000746 640 -AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRGTVA 706 (1303)
Q Consensus 640 -~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~~ia 706 (1303)
.++.+|++|.|++++++++|+||++++|++++|||+||||||||+++|+|+++|++|.... ++++++
T Consensus 319 ~ei~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~ 398 (559)
T COG4988 319 IEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQIS 398 (559)
T ss_pred ceeeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHee
Confidence 3455599999998779999999999999999999999999999999999999999875321 457899
Q ss_pred EEccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH-----
Q 000746 707 YVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF----- 780 (1303)
Q Consensus 707 yv~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~----- 780 (1303)
||||+|.||+|||||||+++++ .+++++.++++.++|.+.++. |+|+||.|||+|.+|||||+||++||||++
T Consensus 399 ~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l 477 (559)
T COG4988 399 WVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASL 477 (559)
T ss_pred eeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCE
Confidence 9999999999999999999997 679999999999999999999 999999999999999999999999999954
Q ss_pred ------------------HHHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchHHHHHHHHh
Q 000746 781 ------------------NSCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLMENA 840 (1303)
Q Consensus 781 ------------------~~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~ 840 (1303)
.+.+.+..+++|+++||||++.+..+|+|++||+|+++++|+|+++.++++.|++++.++
T Consensus 478 ~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~~~q 555 (559)
T COG4988 478 LLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQQ 555 (559)
T ss_pred EEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHHHHHHH
Confidence 345566778999999999999999999999999999999999999999999999998654
No 20
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.8e-59 Score=587.10 Aligned_cols=512 Identities=26% Similarity=0.374 Sum_probs=386.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 325 FGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIY-AFLIFVGVSFGVLTEAQYFQNVWRVGFRLRSTLV 403 (1303)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~L~ 403 (1303)
++ .++.+.++.++..++....|.++..+++.+.........+.. .+.+++ +..+......+...+.+.++...++
T Consensus 13 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~lr 88 (567)
T COG1132 13 YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLAL---LGGVLRALQSYLGSRLGQKIVADLR 88 (567)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55 677778888888999999999999999987611111111111 111111 1111111111122345578888899
Q ss_pred HHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 404 AAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQLHGLWS-APFRITLSMVLLYQQLGVASLLGSLMLVLMVPL 482 (1303)
Q Consensus 404 ~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~-~~~~i~~~~~~l~~~lg~~~l~~~~~~~~~~~~ 482 (1303)
..+|+|.++++...+++.++|++++++++|++.++........... .++.++..+++++..-+..+++..+..+++...
T Consensus 89 ~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~ 168 (567)
T COG1132 89 RDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALV 168 (567)
T ss_pred HHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987655432222 344444333333322122222222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Q 000746 483 QTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIP-- 560 (1303)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~-- 560 (1303)
..++.++.++..++..+..++..+.+.|.++|+++||.|+.|+...+++.+..++..+...+................
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (567)
T COG1132 169 LSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSL 248 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455567777777888889999999999999999999999988777766655544443332222222221111111
Q ss_pred HHhHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCc
Q 000746 561 VVVTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPNPPLEPELPA 640 (1303)
Q Consensus 561 ~~~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~ 640 (1303)
....++.++.+.+..+.++.|.+.+.+.+...+..|+..+...+..+..+..+.+|+.++++.++....+..+.....+.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~ 328 (567)
T COG1132 249 GTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDPLKDTIGS 328 (567)
T ss_pred HHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCCCCCe
Confidence 12334556677777888999999999999999999999999999999999999999999998755322211112223456
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcCeEEEE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRGTVAYV 708 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~~iayv 708 (1303)
|+++|++|+|++++++|+|+||++++||++||||||||||||++++|+|+++|++|.+.. +|++|+||
T Consensus 329 I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V 408 (567)
T COG1132 329 IEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIV 408 (567)
T ss_pred EEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEE
Confidence 999999999997678999999999999999999999999999999999999999875432 35679999
Q ss_pred ccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH------
Q 000746 709 PQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN------ 781 (1303)
Q Consensus 709 ~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~------ 781 (1303)
||+|+||++||+|||.+|++ .++|+++++++.++++++++.+|+|+||.|||+|.+|||||||||+||||+++
T Consensus 409 ~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILI 488 (567)
T COG1132 409 SQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILI 488 (567)
T ss_pred cccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999998 69999999999999999999999999999999999999999999999999653
Q ss_pred -----------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchHHHHHHHHh
Q 000746 782 -----------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLMENA 840 (1303)
Q Consensus 782 -----------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~ 840 (1303)
+.+.+..++||+++|+||++++..||+|++||+|+|+|.|+|+||++++|.|+++++.+
T Consensus 489 LDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~~g~y~~l~~~~ 564 (567)
T COG1132 489 LDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYARLYQAQ 564 (567)
T ss_pred EeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHHHHh
Confidence 33444557899999999999999999999999999999999999999999999998754
No 21
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=2.5e-59 Score=588.77 Aligned_cols=518 Identities=22% Similarity=0.283 Sum_probs=401.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 321 LNNSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFRLRS 400 (1303)
Q Consensus 321 l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 400 (1303)
+.+.+++.++.+.++.++..++....|++++.+++...........+.++.++.+..++..+......+...+.+.++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 87 (571)
T TIGR02203 8 YVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVR 87 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888899999999999999999998654433221111111111111111111111111123467778888
Q ss_pred HHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 401 TLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQ-QLHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLVLM 479 (1303)
Q Consensus 401 ~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~~~~~ 479 (1303)
.++..+|++.++.+....++.+.|++.+++++|++.+.+... .+..++...+.+++++++++..-+..+++.++++++.
T Consensus 88 ~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~ 167 (571)
T TIGR02203 88 DIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVL 167 (571)
T ss_pred HHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 888999999999998888889999999999999999998653 4445555555555555554444333334333333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 480 VPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSI 559 (1303)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~ 559 (1303)
+.+..++.++.++..++..+..+++.+.+.|.++|+++||.++.|+.+.+++++..++..+...+..........+....
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (571)
T TIGR02203 168 SILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLI 247 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44446667778888888889999999999999999999999999999999998877776665555444444433333322
Q ss_pred hH--HhHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 000746 560 PV--VVTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPNPPLEPE 637 (1303)
Q Consensus 560 ~~--~~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~ 637 (1303)
.. .+.++.+|++.+..|.+++|.+++.+.++..+..|+..+...+..+.+++++.+|+.++++.+++......+..+.
T Consensus 248 ~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~ 327 (571)
T TIGR02203 248 ASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTRAIERA 327 (571)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCC
Confidence 21 2234556777778899999999999999999999999999999999999999999999997654322111111122
Q ss_pred CCcEEEEeeEEEeCC-CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-------------cC
Q 000746 638 LPAVSIKNGNFSWDS-KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-------------RG 703 (1303)
Q Consensus 638 ~~~i~~~~~~f~~~~-~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~-------------~~ 703 (1303)
.+.++++|++|+|++ ++++|+|+||++++||+++|+|+||||||||+++|+|+++|.+|. +.+ ++
T Consensus 328 ~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~-I~i~g~~i~~~~~~~~~~ 406 (571)
T TIGR02203 328 RGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQ-ILLDGHDLADYTLASLRR 406 (571)
T ss_pred CCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCe-EEECCEeHHhcCHHHHHh
Confidence 346999999999975 357999999999999999999999999999999999999999874 433 35
Q ss_pred eEEEEccCcccccccHHHHHccCC--CCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH
Q 000746 704 TVAYVPQISWIFNATLRKNILFGS--EFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN 781 (1303)
Q Consensus 704 ~iayv~Q~p~l~~~TireNI~~g~--~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~ 781 (1303)
+|+||||+|++|+|||||||.+++ +.++++++++++.|+++++++.+|+|+||.|||+|.+|||||||||+||||+++
T Consensus 407 ~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~ 486 (571)
T TIGR02203 407 QVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLK 486 (571)
T ss_pred hceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 799999999999999999999996 489999999999999999999999999999999999999999999999999653
Q ss_pred -----------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchHHHHHHH
Q 000746 782 -----------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLME 838 (1303)
Q Consensus 782 -----------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~ 838 (1303)
+.+.+..+++|+|+||||++.++.||+|++|++|++++.|+|++++++++.|+++.+
T Consensus 487 ~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~~~~~~~~~~ 566 (571)
T TIGR02203 487 DAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNGLYAQLHN 566 (571)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHcCCHHHHHHH
Confidence 234455578999999999999999999999999999999999999988888888765
Q ss_pred H
Q 000746 839 N 839 (1303)
Q Consensus 839 ~ 839 (1303)
.
T Consensus 567 ~ 567 (571)
T TIGR02203 567 M 567 (571)
T ss_pred H
Confidence 3
No 22
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=4.2e-59 Score=587.31 Aligned_cols=516 Identities=18% Similarity=0.234 Sum_probs=381.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-chHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 321 LNNSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDP-AWIGYI-YAFLIFVGVSFGVLTEAQYFQNVWRVGFRL 398 (1303)
Q Consensus 321 l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 398 (1303)
+.+.+++.++...++.++..++..+.|+++..++|.+..... ...... +++++++..++..+..........+.+.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (592)
T PRK10790 17 YGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGV 96 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566667777788888889999999999999997643222 111111 111111111111111111111234667778
Q ss_pred HHHHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 399 RSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQ-LHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLV 477 (1303)
Q Consensus 399 r~~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~-~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~~~ 477 (1303)
...++..+|+|.++.+.....+.++|++++++++|++.+++.+.. +..++...+.+++.+.+++..-++..++.++++.
T Consensus 97 ~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~ 176 (592)
T PRK10790 97 VQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFP 176 (592)
T ss_pred HHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999998888899999999999999999986543 3334433333333333332222222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--
Q 000746 478 LMVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFN-SF-- 554 (1303)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~-~~-- 554 (1303)
+.+.+.....++.++..++..+..++..+.+.|.++|+++||.|+.|+.+.+++.+..++..+...+........ ..
T Consensus 177 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (592)
T PRK10790 177 AVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLL 256 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222344455566666666777788889999999999999999999999998877665444322222222111 11
Q ss_pred -HHHHHhHHhHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 000746 555 -ILNSIPVVVTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPNPP 633 (1303)
Q Consensus 555 -~~~~~~~~~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~ 633 (1303)
+......++.++. +.+ ...|.++.+.+++.+.++..+..|+..+...+..+.++..+.+|+.++++.+++.... ..
T Consensus 257 ~~~~~~~~~~~~~~-~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~-~~ 333 (592)
T PRK10790 257 SLFSALILCGLLML-FGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGN-DD 333 (592)
T ss_pred HHHHHHHHHHHHHH-HHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCC-Cc
Confidence 1111111111122 223 3578899999999999999999999999999999999999999999998754322111 11
Q ss_pred CCCCCCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE------------
Q 000746 634 LEPELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI------------ 701 (1303)
Q Consensus 634 ~~~~~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~------------ 701 (1303)
.....+.++++|++|+|++++++|+|+||++++||+++|+|+||||||||+++|+|+++|.+|. +.+
T Consensus 334 ~~~~~~~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~-I~idg~~i~~~~~~~ 412 (592)
T PRK10790 334 RPLQSGRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGE-IRLDGRPLSSLSHSV 412 (592)
T ss_pred cCCCCCeEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCce-EEECCEEhhhCCHHH
Confidence 1122356999999999986568999999999999999999999999999999999999999874 333
Q ss_pred -cCeEEEEccCcccccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH
Q 000746 702 -RGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF 780 (1303)
Q Consensus 702 -~~~iayv~Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~ 780 (1303)
+++|+||||+|++|++||||||.+|++.++++++++++.++++++++.+|+|+||.+||+|.+|||||||||+||||++
T Consensus 413 l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl 492 (592)
T PRK10790 413 LRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLV 492 (592)
T ss_pred HHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999999989999999999999999999999999999999999999999999999999975
Q ss_pred H-----------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchHHHHHH
Q 000746 781 N-----------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLM 837 (1303)
Q Consensus 781 ~-----------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~ 837 (1303)
+ +.+++..+++|+|+||||++.++.||+|++|++|++++.|+|+|++++++.|++++
T Consensus 493 ~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~~~y~~l~ 572 (592)
T PRK10790 493 QTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQGRYWQMY 572 (592)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCHHHHHH
Confidence 4 23445557899999999999999999999999999999999999999999999988
Q ss_pred HHh
Q 000746 838 ENA 840 (1303)
Q Consensus 838 ~~~ 840 (1303)
+.+
T Consensus 573 ~~~ 575 (592)
T PRK10790 573 QLQ 575 (592)
T ss_pred HHH
Confidence 654
No 23
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1e-58 Score=578.96 Aligned_cols=514 Identities=20% Similarity=0.254 Sum_probs=383.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCc--chHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 321 LNNSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQ-RGDP--AWIGYI-YAFLIFVGVSFGVLTEAQYFQNVWRVGF 396 (1303)
Q Consensus 321 l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~-~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (1303)
+.+.+++.++.+.++.++..++..+.|.+++.+++... .+.. ...... .++.+.+..++..+......+...+.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (574)
T PRK11160 10 LYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSHDATF 89 (574)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777778888888888999999999999999653 2221 001111 1111111111111211111112346778
Q ss_pred HHHHHHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 000746 397 RLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQ-QLHGLWSAPFRITLSMVLLY---QQLGVASLLG 472 (1303)
Q Consensus 397 ~lr~~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~-~~~~~~~~~~~i~~~~~~l~---~~lg~~~l~~ 472 (1303)
++...++..+|+|.++++....++.++|++++++++|++.++++.. .+..++...+.+++++++++ +.+++..+++
T Consensus 90 ~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~ 169 (574)
T PRK11160 90 RVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTLGGI 169 (574)
T ss_pred HHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999888899999999999999999998654 34444444444444443333 2333322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 473 SLMLVLMVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFN 552 (1303)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~ 552 (1303)
+.++.+++ ..++.++.++..++..+..++..+.+.|.++|+++||.|+.|+.+.+++++..++..+...+........
T Consensus 170 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (574)
T PRK11160 170 LLLLLLLL--PLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLS 247 (574)
T ss_pred HHHHHHHH--HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21111122 2445566677777788888888999999999999999999999999999887776655555544444433
Q ss_pred HHHHHHHhH--HhHHhhhhhhhhhCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 000746 553 SFILNSIPV--VVTVVSFGTFTLLGGDLTPARAFTSLSLFAV-LRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILM 629 (1303)
Q Consensus 553 ~~~~~~~~~--~~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~-l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~ 629 (1303)
..+...... .+.++.+|++. ..+.++.|..++.+.+... ...|+..++..+..+.++..+.+|+.++++.+++...
T Consensus 248 ~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~ 326 (574)
T PRK11160 248 QALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTF 326 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 332222221 12334556665 4778899987776655444 3458888889999999999999999999986543211
Q ss_pred C-CCCCCCCCCcEEEEeeEEEeCCC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-------
Q 000746 630 P-NPPLEPELPAVSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------- 700 (1303)
Q Consensus 630 ~-~~~~~~~~~~i~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------- 700 (1303)
+ .....+..+.++++|++|+|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+..
T Consensus 327 ~~~~~~~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~ 406 (574)
T PRK11160 327 PTTSTAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIAD 406 (574)
T ss_pred CcccCCCCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhh
Confidence 1 11111223579999999999764 47999999999999999999999999999999999999999975321
Q ss_pred -----EcCeEEEEccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHH
Q 000746 701 -----IRGTVAYVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVS 774 (1303)
Q Consensus 701 -----~~~~iayv~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRia 774 (1303)
++++|+||||+|++|++||+|||.++++ .++++++++++.++++++++. |+|+||.+||+|.+|||||||||+
T Consensus 407 ~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRia 485 (574)
T PRK11160 407 YSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLG 485 (574)
T ss_pred CCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHH
Confidence 2457999999999999999999999975 789999999999999999999 999999999999999999999999
Q ss_pred HHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcch
Q 000746 775 MARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGR 831 (1303)
Q Consensus 775 LARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~ 831 (1303)
||||+++ +.+.+..+++|+|+||||++.++.||+|++|++|++++.|+|+|++++++
T Consensus 486 lARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~g 565 (574)
T PRK11160 486 IARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQG 565 (574)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhcCc
Confidence 9999653 34455557899999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 000746 832 LFQKLME 838 (1303)
Q Consensus 832 ~~~~l~~ 838 (1303)
.|+++++
T Consensus 566 ~y~~l~~ 572 (574)
T PRK11160 566 RYYQLKQ 572 (574)
T ss_pred HHHHHHh
Confidence 9998864
No 24
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=2.7e-58 Score=578.98 Aligned_cols=515 Identities=20% Similarity=0.277 Sum_probs=386.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 322 NNSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFRLRST 401 (1303)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~ 401 (1303)
.+.++..++...++.++..++.++.|++++.++|.+..+.. .......++.++. +..+..........+...+++..
T Consensus 14 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 90 (588)
T PRK13657 14 LGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKGD--IFPLLAAWAGFGL-FNIIAGVLVARHADRLAHRRRLA 90 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777888888889999999999999998765321 1111111111111 11111111111234566788888
Q ss_pred HHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 402 LVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQ-QLHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLVLMV 480 (1303)
Q Consensus 402 L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~~~~~~ 480 (1303)
++..+|+|.++++.....+.+.|++++++++|++.+.+... .+..+....+..++.+++++..-++.+++.++++++..
T Consensus 91 l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~ 170 (588)
T PRK13657 91 VLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVYT 170 (588)
T ss_pred HHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999888899999999999999999876432 33333333333333332222222222222222222223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000746 481 PLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSI- 559 (1303)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~- 559 (1303)
.+..++.++.++..++.++..++..+...|.++|+++||.|+.++.+.+++.+..++..+...+..........+....
T Consensus 171 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (588)
T PRK13657 171 LITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAAS 250 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666777777888888889999999999999999999999999888887766654444333222222222211111
Q ss_pred -hHHhHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC--CCCC
Q 000746 560 -PVVVTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPNP--PLEP 636 (1303)
Q Consensus 560 -~~~~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~--~~~~ 636 (1303)
...+.++.+|++.+..|.+++|.+++++.++..+..|+..+...+..+.++..+++|+.++++.+++...... +..+
T Consensus 251 ~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~ 330 (588)
T PRK13657 251 TITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDLGR 330 (588)
T ss_pred HHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCcCC
Confidence 1223455677888889999999999999999999999999999999999999999999999875432111111 1111
Q ss_pred CCCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-------------cC
Q 000746 637 ELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-------------RG 703 (1303)
Q Consensus 637 ~~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~-------------~~ 703 (1303)
..+.|+++|++|+|++++++|+|+|+++++||+++|+|+||||||||+++|+|+++|.+|. +.+ ++
T Consensus 331 ~~~~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~-I~i~g~~i~~~~~~~~r~ 409 (588)
T PRK13657 331 VKGAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGR-ILIDGTDIRTVTRASLRR 409 (588)
T ss_pred CCCeEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCE-EEECCEEhhhCCHHHHHh
Confidence 2246999999999986567999999999999999999999999999999999999999874 333 45
Q ss_pred eEEEEccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-
Q 000746 704 TVAYVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN- 781 (1303)
Q Consensus 704 ~iayv~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~- 781 (1303)
+|+||||+|++|+|||||||+++++ .++++.+++++.++++++++.+|+|+||.+||+|.+|||||||||+||||+++
T Consensus 410 ~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~ 489 (588)
T PRK13657 410 NIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKD 489 (588)
T ss_pred heEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999974 68899999999999999999999999999999999999999999999999653
Q ss_pred ----------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchHHHHHHHH
Q 000746 782 ----------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLMEN 839 (1303)
Q Consensus 782 ----------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~ 839 (1303)
+.+.+..+++|+|+||||++.++.||+|++|++|+++++|+|+++++.++.|+++++.
T Consensus 490 ~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~~~~y~~l~~~ 569 (588)
T PRK13657 490 PPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGRFAALLRA 569 (588)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHCCChHHHHHHH
Confidence 2344444789999999999999999999999999999999999999888999998865
Q ss_pred h
Q 000746 840 A 840 (1303)
Q Consensus 840 ~ 840 (1303)
+
T Consensus 570 ~ 570 (588)
T PRK13657 570 Q 570 (588)
T ss_pred h
Confidence 4
No 25
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2.4e-58 Score=589.20 Aligned_cols=519 Identities=21% Similarity=0.285 Sum_probs=396.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 320 ALNNSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFRLR 399 (1303)
Q Consensus 320 ~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 399 (1303)
...+.+++.+....+..++..++.++.|++++.++|.+...........+++.+++..++..+......+...+.+.++.
T Consensus 132 ~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 211 (694)
T TIGR01846 132 PAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTSRID 211 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777788888889999999999999999987533221111112221122222222222111122346788889
Q ss_pred HHHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 400 STLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQ-QLHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLVL 478 (1303)
Q Consensus 400 ~~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~~~~ 478 (1303)
..++..+|+|.++++...+++.++|++++++ +|++.+.+... .+...+...+.+++.+++++..-+..+++.++.+++
T Consensus 212 ~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~ 290 (694)
T TIGR01846 212 VELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVC 290 (694)
T ss_pred HHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998999999999999 69999988643 333333222222223333333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 479 MVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNS 558 (1303)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~ 558 (1303)
...+..++.++.++..++..+..+++.+.+.|.++|+++||.+|.|+.+.+++++..++..+...+..........+...
T Consensus 291 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (694)
T TIGR01846 291 YALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIEL 370 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334456666777777888888899999999999999999999999999999887776666555554444443333222
Q ss_pred HhH--HhHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC-CCC
Q 000746 559 IPV--VVTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPNP-PLE 635 (1303)
Q Consensus 559 ~~~--~~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~-~~~ 635 (1303)
... .+.++.+|++.+..|.+|.|.+++...+...+..|+..+...+..+.+++.+++|+.++++.+++...... +..
T Consensus 371 i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~ 450 (694)
T TIGR01846 371 IQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSAGLAALP 450 (694)
T ss_pred HHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCCCCCC
Confidence 221 23346678888888999999999999999999999999999999999999999999999976543221111 111
Q ss_pred CCCCcEEEEeeEEEeCCC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------Ec
Q 000746 636 PELPAVSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IR 702 (1303)
Q Consensus 636 ~~~~~i~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~ 702 (1303)
...+.|+++|++|+|+++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+.. +|
T Consensus 451 ~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r 530 (694)
T TIGR01846 451 ELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLR 530 (694)
T ss_pred CCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHH
Confidence 123469999999999754 47999999999999999999999999999999999999999874321 24
Q ss_pred CeEEEEccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH
Q 000746 703 GTVAYVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN 781 (1303)
Q Consensus 703 ~~iayv~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~ 781 (1303)
++|+||||+|++|++||+|||.++++ .++++++++++.++++++++.+|+|++|.+||+|.+|||||||||+||||+++
T Consensus 531 ~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~ 610 (694)
T TIGR01846 531 RQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVG 610 (694)
T ss_pred HhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHh
Confidence 57999999999999999999999875 78999999999999999999999999999999999999999999999999653
Q ss_pred -----------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchHHHHHHH
Q 000746 782 -----------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLME 838 (1303)
Q Consensus 782 -----------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~ 838 (1303)
+.+.+..+++|+|+||||++.++.||+|++|++|+++++|+|++++++++.|+++++
T Consensus 611 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~~~~y~~l~~ 690 (694)
T TIGR01846 611 NPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLYARLWQ 690 (694)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHcCChHHHHHH
Confidence 234455578999999999999999999999999999999999999999999999875
Q ss_pred H
Q 000746 839 N 839 (1303)
Q Consensus 839 ~ 839 (1303)
.
T Consensus 691 ~ 691 (694)
T TIGR01846 691 Q 691 (694)
T ss_pred h
Confidence 3
No 26
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=1.5e-57 Score=572.91 Aligned_cols=518 Identities=23% Similarity=0.340 Sum_probs=390.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 319 RALNNSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQ-RGDPAWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFR 397 (1303)
Q Consensus 319 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (1303)
+.+.+.+++.++...++.++..++..+.|++++.++|.+. .++........++ .++..++..+......+...+++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (576)
T TIGR02204 10 WPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAF-LLVVALVLALGTAARFYLVTWLGER 88 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566677777788888899999999999999999743 3221111111111 1111111111111122233467888
Q ss_pred HHHHHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 398 LRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQ-QLHGLWSAPFRITLSMVLLYQQLGVASLLGSLML 476 (1303)
Q Consensus 398 lr~~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~~ 476 (1303)
+...++..+|+|.++.+.....+.+.|++++++++|++.+.+... .+..++...+.+++++++++...++..++.++.+
T Consensus 89 ~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 168 (576)
T TIGR02204 89 VVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAV 168 (576)
T ss_pred HHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 899999999999999998888888999999999999999988653 3444444444444443333322222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 477 VLMVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFIL 556 (1303)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~ 556 (1303)
++.+.+..++.++.++..++.++..++..+.+.|.++|+++||.+++|+.+.+++++..++..+...+......+...+.
T Consensus 169 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (576)
T TIGR02204 169 PLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIV 248 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222234566777788888888889999999999999999999999999999888877765554444333333322222
Q ss_pred HHH--hHHhHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-CC-
Q 000746 557 NSI--PVVVTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMP-NP- 632 (1303)
Q Consensus 557 ~~~--~~~~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~-~~- 632 (1303)
... ...+.++.+|++.+..|.++.+.+++...+...+..|+..++..+..+.+++.+++|+.++++.+++.... .+
T Consensus 249 ~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~ 328 (576)
T TIGR02204 249 IVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPK 328 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCc
Confidence 111 12233455677878889999999999999999999999999999999999999999999999765431111 11
Q ss_pred -CCCCCCCcEEEEeeEEEeCCC--CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE--------
Q 000746 633 -PLEPELPAVSIKNGNFSWDSK--SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-------- 701 (1303)
Q Consensus 633 -~~~~~~~~i~~~~~~f~~~~~--~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~-------- 701 (1303)
...+..+.|+++|++|+|+++ +++|+|+||+++|||+++|+|+||||||||+++|+|+++|.+|. +.+
T Consensus 329 ~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~-I~i~g~~i~~~ 407 (576)
T TIGR02204 329 TLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGR-ILLDGVDLRQL 407 (576)
T ss_pred cCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCE-EEECCEEHHhc
Confidence 111123469999999999753 47999999999999999999999999999999999999999874 433
Q ss_pred -----cCeEEEEccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHH
Q 000746 702 -----RGTVAYVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSM 775 (1303)
Q Consensus 702 -----~~~iayv~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaL 775 (1303)
++.|+||||+|++|++||||||.++++ .++++++++++.+++.++++.+|+|++|.+||+|.+|||||||||+|
T Consensus 408 ~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~l 487 (576)
T TIGR02204 408 DPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAI 487 (576)
T ss_pred CHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHH
Confidence 347999999999999999999999875 67889999999999999999999999999999999999999999999
Q ss_pred HHHHHH-----------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchH
Q 000746 776 ARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRL 832 (1303)
Q Consensus 776 ARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~ 832 (1303)
|||+++ +.+.+..+++|+|+||||++.++.+|+|++|++|++++.|+|+++.++++.
T Consensus 488 aRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~~~~ 567 (576)
T TIGR02204 488 ARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGGL 567 (576)
T ss_pred HHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHcCCh
Confidence 999653 234455578999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 000746 833 FQKLME 838 (1303)
Q Consensus 833 ~~~l~~ 838 (1303)
|+++.+
T Consensus 568 ~~~l~~ 573 (576)
T TIGR02204 568 YARLAR 573 (576)
T ss_pred HHHHHh
Confidence 988764
No 27
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=2.5e-57 Score=564.11 Aligned_cols=478 Identities=20% Similarity=0.223 Sum_probs=352.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 321 LNNSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIF-VGVSFGVLTEAQYFQNVWRVGFRLR 399 (1303)
Q Consensus 321 l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~lr 399 (1303)
+.+.+++.++...++.++..++..+.|++++.++|.+..... ...+...+..+ +..+...+......+...+.+.++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (529)
T TIGR02868 7 LLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP-VLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAALRSL 85 (529)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777788888889999999999999997653322 11111111111 1111111111111112336677888
Q ss_pred HHHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 400 STLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQ-QLHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLVL 478 (1303)
Q Consensus 400 ~~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~~~~ 478 (1303)
..++..+|+|.++++...+++.++|++++++++|++.+++... .+..++...+.+++++++++..-+..+++.++.+.+
T Consensus 86 ~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~ 165 (529)
T TIGR02868 86 GRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLLL 165 (529)
T ss_pred HHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 8999999999999999988899999999999999999998654 344444444444444443333222222222222122
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 479 MVPLQTFII-SKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILN 557 (1303)
Q Consensus 479 ~~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~ 557 (1303)
+..+...+. +..++..++..+..++..+.+.|.++|+++||.+++|+.+.+++++..++..+...+..........+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (529)
T TIGR02868 166 AGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQL 245 (529)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222233 3334555666777888999999999999999999999999999988777666655555444444333322
Q ss_pred HHhH--HhHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC--
Q 000746 558 SIPV--VVTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPNPP-- 633 (1303)
Q Consensus 558 ~~~~--~~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~-- 633 (1303)
.... .+.++.+|.+.+..|.++.+.+.+.+.+...+..|+..++..+..+.++.++.+|+.++++.+++......+
T Consensus 246 ~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~ 325 (529)
T TIGR02868 246 LAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVPAA 325 (529)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCC
Confidence 2221 223445677777889999999999988889999999999999999999999999999999765432111110
Q ss_pred --CCCCCCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc---------
Q 000746 634 --LEPELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR--------- 702 (1303)
Q Consensus 634 --~~~~~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~--------- 702 (1303)
..+..+.|+++|++|+|++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|. +.++
T Consensus 326 ~~~~~~~~~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~-I~i~g~~i~~~~~ 404 (529)
T TIGR02868 326 GALGLGKPTLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGE-VTLDGVSVSSLQD 404 (529)
T ss_pred cccCCCCceEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE-EEECCEEhhhHHH
Confidence 1112346999999999987667999999999999999999999999999999999999999974 5444
Q ss_pred ---CeEEEEccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHH
Q 000746 703 ---GTVAYVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA 778 (1303)
Q Consensus 703 ---~~iayv~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARA 778 (1303)
++|+||||+|++|++||||||.+|++ .++++++++++.|+++++++.+|+|+||.|||+|.+|||||||||+||||
T Consensus 405 ~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARa 484 (529)
T TIGR02868 405 ELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARA 484 (529)
T ss_pred HHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHH
Confidence 48999999999999999999999875 68999999999999999999999999999999999999999999999999
Q ss_pred HHH-----------------------HHHhHhcCCCEEEEEecCC
Q 000746 779 VFN-----------------------SCIKEELRGKTRILVTNQL 800 (1303)
Q Consensus 779 l~~-----------------------~~i~~~~~~~TvilvtH~~ 800 (1303)
+++ +.+.+..+++|+|+||||+
T Consensus 485 ll~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 485 LLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 653 2344555789999999995
No 28
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2.9e-57 Score=565.76 Aligned_cols=504 Identities=18% Similarity=0.257 Sum_probs=375.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Q 000746 337 IGNDLSQFVGPVLLNHLLQSMQRGDPAW-IGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFRLRSTLVAAIFRKTLRLTH 415 (1303)
Q Consensus 337 ~~~~~~~~~~p~ll~~li~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~L~~~i~~k~l~l~~ 415 (1303)
++..++..+.|++++.++|.+..+.... ....++.++++..++..+..........+.+.++...++..+|+|.++.+.
T Consensus 5 ~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~ 84 (569)
T PRK10789 5 IIIAMLQLIPPKVVGIIVDGVTEQHMTTGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHP 84 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 4455667778999999999775432111 111222222222222212211111123356778888899999999999999
Q ss_pred ccccCCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 416 EARKGFPSGKVTNMITTDANALQQIS-QQLHGLWSAPFRITLSMVLLYQQLGV-ASLLGSLMLVLMVPLQTFIISKMRKL 493 (1303)
Q Consensus 416 ~~~~~~~~g~i~nl~s~Dv~~i~~~~-~~~~~~~~~~~~i~~~~~~l~~~lg~-~~l~~~~~~~~~~~~~~~~~~~~~~~ 493 (1303)
..+.+.++|++++++++|++.+.... ..+..++..++..++++++++..+++ .+++.++++.+...+...+.++.++.
T Consensus 85 ~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~ 164 (569)
T PRK10789 85 EFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHER 164 (569)
T ss_pred HHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999998654 33444555444444333333212222 22222222222223334555666667
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HHhHHhhhhhh
Q 000746 494 TKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIP--VVVTVVSFGTF 571 (1303)
Q Consensus 494 ~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~f~~~ 571 (1303)
.++..+..++..+.+.|.++|+++||.+++|+.+.+++.+..++..+...+..........+..... ..+.++.+|.+
T Consensus 165 ~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 244 (569)
T PRK10789 165 FKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSW 244 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777788889999999999999999999999998887666544444443333332222222111 12234556778
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcEEEEeeEEEeC
Q 000746 572 TLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPNPPLEPELPAVSIKNGNFSWD 651 (1303)
Q Consensus 572 ~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~f~~~ 651 (1303)
.+.+|.+++|.+++.+.+...+..|+..++..+..+.+++++.+|+.++++.+++......+.....+.|+++|++|+|+
T Consensus 245 lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~ 324 (569)
T PRK10789 245 MVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSEPVPEGRGELDVNIRQFTYP 324 (569)
T ss_pred HHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCCCCCCcEEEEEEEEECC
Confidence 78889999999999999999999999999999999999999999999999765332111111111234699999999997
Q ss_pred CC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcCeEEEEccCccccccc
Q 000746 652 SK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRGTVAYVPQISWIFNAT 718 (1303)
Q Consensus 652 ~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~~iayv~Q~p~l~~~T 718 (1303)
.+ .++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. ++++|+||||+|++|++|
T Consensus 325 ~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~t 404 (569)
T PRK10789 325 QTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDT 404 (569)
T ss_pred CCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeecccc
Confidence 54 47999999999999999999999999999999999999999975321 235799999999999999
Q ss_pred HHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH----------------
Q 000746 719 LRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN---------------- 781 (1303)
Q Consensus 719 ireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~---------------- 781 (1303)
|+|||.++.+ .++++++++++.+++++++..+|+|++|.+||+|.+|||||||||+||||+++
T Consensus 405 i~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~ 484 (569)
T PRK10789 405 VANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDG 484 (569)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCH
Confidence 9999999964 78999999999999999999999999999999999999999999999999653
Q ss_pred -------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchHHHHHHHHh
Q 000746 782 -------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLMENA 840 (1303)
Q Consensus 782 -------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~ 840 (1303)
+.+++..+++|+|+||||++.++.||+|++|++|+++++|+|+++.++++.|+++++.+
T Consensus 485 ~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~ 550 (569)
T PRK10789 485 RTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQ 550 (569)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHHh
Confidence 23444557899999999999999999999999999999999999999999999987653
No 29
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.8e-57 Score=616.61 Aligned_cols=447 Identities=21% Similarity=0.299 Sum_probs=355.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 393 RVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQ-QLHGLWSAPFRITLSMVLLYQQLGVASLL 471 (1303)
Q Consensus 393 ~~~~~lr~~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~lg~~~l~ 471 (1303)
..+.+.-..++..++++.++.+...++..++|+++|++++|++.+++.+. .+..+...++.++.+++++.....+.+++
T Consensus 1031 ~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~ 1110 (1522)
T TIGR00957 1031 IGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVI 1110 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777888999999999999999999999999999999998654 44555555665555554443333333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 472 GSLMLVLMVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAF 551 (1303)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~ 551 (1303)
.+.++++...++.++.+..++.++...+.+++..+.+.|.++|+++||+||+|+.+.++..+..+...+..........+
T Consensus 1111 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 1190 (1522)
T TIGR00957 1111 IPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRW 1190 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222333333445555566666666777788889999999999999999999999998887777666655444444444
Q ss_pred HHHHHHHHhHHhHHhhhhhhhhh-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-
Q 000746 552 NSFILNSIPVVVTVVSFGTFTLL-GGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILM- 629 (1303)
Q Consensus 552 ~~~~~~~~~~~~~~~~f~~~~~~-~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~- 629 (1303)
..........++ ++..+.+.+. .+.+++|.+..++.+...+..|+..+...+..+..+.+|.+|+.++++.+++...
T Consensus 1191 ~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~ 1269 (1522)
T TIGR00957 1191 LAVRLECVGNCI-VLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQ 1269 (1522)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc
Confidence 444333322221 2222333333 5779999999999999999999999999999999999999999999976543211
Q ss_pred ---CC-CCCCCCCCcEEEEeeEEEeCCC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----
Q 000746 630 ---PN-PPLEPELPAVSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV---- 700 (1303)
Q Consensus 630 ---~~-~~~~~~~~~i~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~---- 700 (1303)
.. ++.++..+.|+|+|++|+|+++ +++|+|+||+|++||+++|||+||||||||+++|+|+++|++|.+..
T Consensus 1270 ~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~d 1349 (1522)
T TIGR00957 1270 IQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLN 1349 (1522)
T ss_pred ccCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEE
Confidence 11 1122445679999999999765 47999999999999999999999999999999999999999875421
Q ss_pred --------EcCeEEEEccCcccccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHH
Q 000746 701 --------IRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQR 772 (1303)
Q Consensus 701 --------~~~~iayv~Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQR 772 (1303)
+|++|+||||||.||+|||||||....++++++++++++.|++++.++.+|+|+||.|||+|.+||||||||
T Consensus 1350 I~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQr 1429 (1522)
T TIGR00957 1350 IAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQL 1429 (1522)
T ss_pred ccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHH
Confidence 356899999999999999999999555799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 773 VSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 773 iaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
||||||+++ +.+++..+++|+|+||||++++..+|+|++|++|+|+|.|+|+||+++
T Consensus 1430 l~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~ 1509 (1522)
T TIGR00957 1430 VCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQ 1509 (1522)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999653 456667789999999999999999999999999999999999999998
Q ss_pred chHHHHHHHHh
Q 000746 830 GRLFQKLMENA 840 (1303)
Q Consensus 830 ~~~~~~l~~~~ 840 (1303)
++.|++++++.
T Consensus 1510 ~~~f~~l~~~~ 1520 (1522)
T TIGR00957 1510 RGIFYSMAKDA 1520 (1522)
T ss_pred CCHHHHHHHHc
Confidence 99999998653
No 30
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-57 Score=515.88 Aligned_cols=453 Identities=24% Similarity=0.393 Sum_probs=343.3
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Q 000746 384 EAQYFQNV--WRVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQLHGLWSAPFRIT--LSMV 459 (1303)
Q Consensus 384 ~~~~~~~~--~~~~~~lr~~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~~~~i~--~~~~ 459 (1303)
..+|..+. .....++-+.++..+|+|....++....+..+|+++|++..|+|.+++.+..+...+...+.++ +.+.
T Consensus 73 ~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~ 152 (573)
T COG4987 73 AARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIG 152 (573)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 35676653 3677899999999999999999998888899999999999999999998766654443332222 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHH
Q 000746 460 LLYQQLGVASLLGSLMLVLMVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDEL 539 (1303)
Q Consensus 460 ~l~~~lg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~ 539 (1303)
+-+..++.+.+++..++++.+.+.....++.++..++..+.+....+.+.|.+.|....+.+|.++.+.+.+.+.-+.-.
T Consensus 153 L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~ 232 (573)
T COG4987 153 LSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWL 232 (573)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 32334444444444433333333345556666666666666777778899999999999999999999998876655555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhH---HhhhhhhhhhCCCCC-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 000746 540 SWFRKAQFLSAFNSFILNSIPVVVT---VVSFGTFTLLGGDLT-PARAFTSLSLFAVLRFPLNMLP-NLLSQVVNANVSL 614 (1303)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~f~~~~~~~~~l~-~~~~f~~l~l~~~l~~pl~~l~-~~~~~~~~a~~s~ 614 (1303)
+..++...+..+..++...+..+.. .++.+.- .-.|..+ +..+...+..|..+ .++..+. ..+....+...|.
T Consensus 233 ~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~-~~~G~~~~~~aa~~ll~~f~~~-eaf~~L~~~A~~~lgq~~~Sa 310 (573)
T COG4987 233 KAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQ-VGAGALAQPGAALALLVIFAAL-EAFEPLAPGAFQHLGQVIASA 310 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcCCCcchhHHHHHHHHHHHHH-HHHhhhcchhHHHhhHHHHHH
Confidence 5555555555555555443332221 1222221 1224444 23323333223322 2333333 7778899999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCCCcEEEEeeEEEeCCCC-CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC
Q 000746 615 QRLEELLLAEERILMPNPPLEPELPAVSIKNGNFSWDSKS-PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP 693 (1303)
Q Consensus 615 ~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~-~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~ 693 (1303)
+|+.+..+.+++...++++.......++++|++|+|++++ ++|+|+||++++||++||+|+||||||||+++|.|.++|
T Consensus 311 ~Rl~~i~~q~~e~~~~~~~~~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~ 390 (573)
T COG4987 311 RRLNDILDQKPEVTFPDEQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDP 390 (573)
T ss_pred HHHhhhccCCcccCCCccccCCccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCC
Confidence 9999999876654333221222222799999999998776 799999999999999999999999999999999999999
Q ss_pred CCCceEE------------EcCeEEEEccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccC
Q 000746 694 LKDASVV------------IRGTVAYVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGE 760 (1303)
Q Consensus 694 ~~g~~~~------------~~~~iayv~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige 760 (1303)
++|+... ++..|++++|.+.+|++|+|||+.+++| .+||++++++++++|++.++..|+|++|.+||
T Consensus 391 ~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge 470 (573)
T COG4987 391 QQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGE 470 (573)
T ss_pred CCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhcc
Confidence 9985321 2347999999999999999999999997 68999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHHHHHH-----------------------HHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEE
Q 000746 761 RGVNISGGQKQRVSMARAVFNS-----------------------CIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMI 817 (1303)
Q Consensus 761 ~G~~LSGGQkQRiaLARAl~~~-----------------------~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i 817 (1303)
+|.+||||||||++|||+++++ .+.+..+|||+|+||||+..++.+|+|++|++|++
T Consensus 471 ~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gki 550 (573)
T COG4987 471 GGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKI 550 (573)
T ss_pred CCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCee
Confidence 9999999999999999997653 24456689999999999999999999999999999
Q ss_pred EEecCHHHHHhcchHHHHHHH
Q 000746 818 KEEGSFEELSKHGRLFQKLME 838 (1303)
Q Consensus 818 ~~~g~~~~l~~~~~~~~~l~~ 838 (1303)
+++|+|++++.+++.|+++++
T Consensus 551 ie~G~~~~Ll~~~g~~~~l~q 571 (573)
T COG4987 551 IEEGTHAELLANNGRYKRLYQ 571 (573)
T ss_pred eecCCHHhhhccccHHHHHhc
Confidence 999999999999999998864
No 31
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=2.3e-56 Score=558.35 Aligned_cols=515 Identities=18% Similarity=0.257 Sum_probs=387.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q 000746 321 LNNSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQYF--QNVWRVGFRL 398 (1303)
Q Consensus 321 l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l 398 (1303)
..+.+++.++...++.++..++..+.|++++.++|.+...+.. ..+. ...+ +..++..+ ..|. ....+...++
T Consensus 13 ~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~-~~~~-~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~ 87 (585)
T TIGR01192 13 YLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSDV-LPTL-ALWA-GFGVFNTI--AYVLVAREADRLAHGR 87 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH-HHHH-HHHH-HHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 3456777788888888999999999999999999977543221 1111 1111 11111111 1121 1234677788
Q ss_pred HHHHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 399 RSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQ-QLHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLV 477 (1303)
Q Consensus 399 r~~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~~~ 477 (1303)
+..++..+|+|.++++...+++.++|++++++++|++.+.+... .+..+....+.+++.++.++..-+..+++.+++++
T Consensus 88 ~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~ 167 (585)
T TIGR01192 88 RATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGI 167 (585)
T ss_pred HHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999998889999999999999999987543 33333444444433333322222222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 478 LMVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILN 557 (1303)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~ 557 (1303)
+...+..++.++.++..++..+..++..+.+.|.++|+++||.++.|+.+.+++++..++..+...+..........+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (585)
T TIGR01192 168 LYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNR 247 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233345566667777777777888899999999999999999999999888877666544433333222222222211
Q ss_pred HHh--HHhHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC--C
Q 000746 558 SIP--VVVTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPNP--P 633 (1303)
Q Consensus 558 ~~~--~~~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~--~ 633 (1303)
... ..+.++.+|.+.+..|.++.|.+++.+.++..+..|+..+...+..+.++..+.+|+.++++.+++...... +
T Consensus 248 ~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~ 327 (585)
T TIGR01192 248 MASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAPE 327 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccCCC
Confidence 111 123345677788888999999999999999999999999999999999999999999999875432211111 1
Q ss_pred CCCCCCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------E
Q 000746 634 LEPELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------I 701 (1303)
Q Consensus 634 ~~~~~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~ 701 (1303)
.....+.++++|++|+|++++++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. +
T Consensus 328 ~~~~~~~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~ 407 (585)
T TIGR01192 328 LPNVKGAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESL 407 (585)
T ss_pred CCCCCCeEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHH
Confidence 1112346999999999986567999999999999999999999999999999999999999975421 2
Q ss_pred cCeEEEEccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH
Q 000746 702 RGTVAYVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF 780 (1303)
Q Consensus 702 ~~~iayv~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~ 780 (1303)
++.++||||+|++|++|++|||.++.+ .++++++++++.+++++++..+|+|++|.+|++|.+|||||||||+||||++
T Consensus 408 ~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall 487 (585)
T TIGR01192 408 RKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAIL 487 (585)
T ss_pred HhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHh
Confidence 357999999999999999999999865 6788899999999999999999999999999999999999999999999965
Q ss_pred H-----------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchHHHHHH
Q 000746 781 N-----------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLM 837 (1303)
Q Consensus 781 ~-----------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~ 837 (1303)
. +.+.+..+++|+|+||||++.++.||+|++|++|++++.|+|+++.++++.|++++
T Consensus 488 ~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~ 567 (585)
T TIGR01192 488 KNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDGRFYKLL 567 (585)
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCCChHHHHH
Confidence 3 33445557899999999999999999999999999999999999999999999987
Q ss_pred HHh
Q 000746 838 ENA 840 (1303)
Q Consensus 838 ~~~ 840 (1303)
+.+
T Consensus 568 ~~~ 570 (585)
T TIGR01192 568 RRS 570 (585)
T ss_pred HhC
Confidence 643
No 32
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=6.3e-57 Score=603.69 Aligned_cols=513 Identities=19% Similarity=0.207 Sum_probs=369.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 323 NSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDP-AWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFRLRST 401 (1303)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~ 401 (1303)
+.+++.++.++++.++.+++.++.|+++..+++.+..... ......+++++++..++..++.....+...+.+.++...
T Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~ 900 (1466)
T PTZ00265 821 FSYKKDVTIIALSILVAGGLYPVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKT 900 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455567888888889999999999999999986543211 111111221111111111111111111234678888888
Q ss_pred HHHHHHHHHHcCCcccccC--CChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 402 LVAAIFRKTLRLTHEARKG--FPSGKVTNMITTDANALQQISQ-QLHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLVL 478 (1303)
Q Consensus 402 L~~~i~~k~l~l~~~~~~~--~~~g~i~nl~s~Dv~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~~~~ 478 (1303)
++..+|++.++.+...+++ .++|++++++++|++.++.... .+..+...++.+++++++++..-+..+++.+ ++
T Consensus 901 lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~---~~ 977 (1466)
T PTZ00265 901 MKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLT---GT 977 (1466)
T ss_pred HHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 9999999999999887764 7899999999999999998543 3444444444444443333222112122111 11
Q ss_pred HHHHHHHHHHHHHHHH-HHH-----------------HHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHH
Q 000746 479 MVPLQTFIISKMRKLT-KEG-----------------LQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELS 540 (1303)
Q Consensus 479 ~~~~~~~~~~~~~~~~-~~~-----------------~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~ 540 (1303)
+..+...+.++.+... ++. .+..++....++|.++|+++||.|+.|+.+.+++.+..++..+
T Consensus 978 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~ 1057 (1466)
T PTZ00265 978 YFIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNK 1057 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 1111122222222111 111 1223445678999999999999999999999999887766555
Q ss_pred HHHHHHHHHHHHHHHHHHHhH--HhHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 541 WFRKAQFLSAFNSFILNSIPV--VVTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLE 618 (1303)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~ 618 (1303)
..++.....++...+..+... .+.++++|++.+..|.++.+.++.++.++.....++..+...++.+.+++++++|+.
T Consensus 1058 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~ 1137 (1466)
T PTZ00265 1058 GQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYY 1137 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 545444443333322222222 234567888888899999999888776665555678888899999999999999999
Q ss_pred HHHHHHhhhcCC---CCC---CCCCCCcEEEEeeEEEeCCC--CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcC
Q 000746 619 ELLLAEERILMP---NPP---LEPELPAVSIKNGNFSWDSK--SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGE 690 (1303)
Q Consensus 619 ~~l~~~~~~~~~---~~~---~~~~~~~i~~~~~~f~~~~~--~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~ 690 (1303)
++++.+++.+.. ... .....+.|+|+||+|+|+++ .++|+|+||+|++|+++|||||||||||||+++|+|+
T Consensus 1138 ~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ 1217 (1466)
T PTZ00265 1138 PLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRF 1217 (1466)
T ss_pred HHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 999764321110 010 01123469999999999753 3799999999999999999999999999999999999
Q ss_pred CCC------------------------------------------------------CCCceEE-------------EcC
Q 000746 691 LPP------------------------------------------------------LKDASVV-------------IRG 703 (1303)
Q Consensus 691 ~~~------------------------------------------------------~~g~~~~-------------~~~ 703 (1303)
|+| ++|. +. +|+
T Consensus 1218 ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-I~idG~di~~~~~~~lR~ 1296 (1466)
T PTZ00265 1218 YDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGK-ILLDGVDICDYNLKDLRN 1296 (1466)
T ss_pred CCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCe-EEECCEEHHhCCHHHHHh
Confidence 998 3553 33 356
Q ss_pred eEEEEccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-
Q 000746 704 TVAYVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN- 781 (1303)
Q Consensus 704 ~iayv~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~- 781 (1303)
+|+||||+|.||+|||||||.+|++ .++++++++++.++++++++.||+|+||.|||+|.+||||||||||||||+++
T Consensus 1297 ~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~ 1376 (1466)
T PTZ00265 1297 LFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLRE 1376 (1466)
T ss_pred hccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcC
Confidence 8999999999999999999999975 78999999999999999999999999999999999999999999999999653
Q ss_pred ----------------------HHHhHh--cCCCEEEEEecCCCcccccCEEEEEeC----CEEE-EecCHHHHHh-cch
Q 000746 782 ----------------------SCIKEE--LRGKTRILVTNQLHFLPHVDRIILVSE----GMIK-EEGSFEELSK-HGR 831 (1303)
Q Consensus 782 ----------------------~~i~~~--~~~~TvilvtH~~~~l~~aD~ii~l~~----G~i~-~~g~~~~l~~-~~~ 831 (1303)
+.+.+. .+++|+|+||||++.++.||+|++|++ |+++ |+|+|+||++ +++
T Consensus 1377 p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g 1456 (1466)
T PTZ00265 1377 PKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDG 1456 (1466)
T ss_pred CCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCC
Confidence 344454 258999999999999999999999999 9954 8999999998 589
Q ss_pred HHHHHHHH
Q 000746 832 LFQKLMEN 839 (1303)
Q Consensus 832 ~~~~l~~~ 839 (1303)
.|++++..
T Consensus 1457 ~Y~~l~~~ 1464 (1466)
T PTZ00265 1457 VYKKYVKL 1464 (1466)
T ss_pred hHHHHHhh
Confidence 99998754
No 33
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.7e-56 Score=603.23 Aligned_cols=450 Identities=19% Similarity=0.260 Sum_probs=336.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 392 WRVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQ-QLHGLWSAPFRITLSMVLLYQQLGVASL 470 (1303)
Q Consensus 392 ~~~~~~lr~~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~lg~~~l 470 (1303)
.+.+.+.-..++..++++.++.+...+++.++|+++|++++|++.+++... .+..+....+.++..++++.....+..+
T Consensus 978 ~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~~ 1057 (1622)
T PLN03130 978 IMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLW 1057 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777788889999999999999999999999999999999998643 3444444444444443332222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 471 LGSLMLVLMVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSA 550 (1303)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~ 550 (1303)
+.+.++++++.+..++.+..++.++.....+++..+.+.|.++|+++||+|++++.+.++..+..+...+..........
T Consensus 1058 ~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 1137 (1622)
T PLN03130 1058 AIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNR 1137 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21222222223333444555555666666777888999999999999999999998888776666655444333332333
Q ss_pred HHHHHHHHHhHHhHHhhhhhhhhhC-CCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 551 FNSFILNSIPVVVTVVSFGTFTLLG-GDLT-----PARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAE 624 (1303)
Q Consensus 551 ~~~~~~~~~~~~~~~~~f~~~~~~~-~~l~-----~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~ 624 (1303)
+..........++. +..+.+.+.. +... ++.+...+++...+..++..+......+..+.+|.+|+.++++.+
T Consensus 1138 wl~~~l~~~~~~~i-~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~ 1216 (1622)
T PLN03130 1138 WLAIRLETLGGLMI-WLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLP 1216 (1622)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 33322222221111 1112222322 2211 333444445556666777788888888999999999999999765
Q ss_pred hhhcC----CC-CCCCCCCCcEEEEeeEEEeCCC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCce
Q 000746 625 ERILM----PN-PPLEPELPAVSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDAS 698 (1303)
Q Consensus 625 ~~~~~----~~-~~~~~~~~~i~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~ 698 (1303)
++.+. .. ++.++..+.|+|+|++|+|+++ +++|+|+||+|++||++||||+||||||||+++|+|+++|++|.+
T Consensus 1217 ~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I 1296 (1622)
T PLN03130 1217 SEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRI 1296 (1622)
T ss_pred CcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceE
Confidence 43211 11 1122344679999999999754 479999999999999999999999999999999999999999854
Q ss_pred EE------------EcCeEEEEccCcccccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCc
Q 000746 699 VV------------IRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNIS 766 (1303)
Q Consensus 699 ~~------------~~~~iayv~Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LS 766 (1303)
.. +|++|+||||+|.||+|||||||.+++++++++++++++.|+++++++.+|+|+||.|||+|.+||
T Consensus 1297 ~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLS 1376 (1622)
T PLN03130 1297 LIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFS 1376 (1622)
T ss_pred EECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCC
Confidence 21 356899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCH
Q 000746 767 GGQKQRVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSF 823 (1303)
Q Consensus 767 GGQkQRiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~ 823 (1303)
||||||||||||+++ +.+++..+++|+|+||||++++..||+|+||++|+|+|.|+|
T Consensus 1377 gGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~ 1456 (1622)
T PLN03130 1377 VGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTP 1456 (1622)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999653 456667789999999999999999999999999999999999
Q ss_pred HHHHhc-chHHHHHHHHhcc
Q 000746 824 EELSKH-GRLFQKLMENAGK 842 (1303)
Q Consensus 824 ~~l~~~-~~~~~~l~~~~~~ 842 (1303)
+||+++ ++.|++++++.+.
T Consensus 1457 ~eLl~~~~g~f~~L~~~~~~ 1476 (1622)
T PLN03130 1457 ENLLSNEGSAFSKMVQSTGA 1476 (1622)
T ss_pred HHHHhCCCCHHHHHHHHcCh
Confidence 999987 6899999887654
No 34
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=6.8e-56 Score=551.64 Aligned_cols=496 Identities=23% Similarity=0.298 Sum_probs=370.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 324 SFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFRLRSTLV 403 (1303)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~L~ 403 (1303)
.+++.++...++.++..++..+.|++++.++|.+.........+.+.+++++..++..++.....+...+.+.++...++
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 82 (544)
T TIGR01842 3 KNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALN 82 (544)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677778888888999999999999999764322211112222222222222222222222233467888899999
Q ss_pred HHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q 000746 404 AAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQ--LHGLWSAPFRITLSMVL--LYQQLGVASLLGSLMLVLM 479 (1303)
Q Consensus 404 ~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~--~~~~~~~~~~i~~~~~~--l~~~lg~~~l~~~~~~~~~ 479 (1303)
..+|+|.++++.. ..+...+.+++|++.+++.... +..+...++.++..+++ +.+.+++..+++. ++.
T Consensus 83 ~~~~~~ll~~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~---~l~ 154 (544)
T TIGR01842 83 QPIFAASFSATLR-----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYLLVCFLLHPWIGILALGGA---VVL 154 (544)
T ss_pred HHHHHHHhcCccc-----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH---HHH
Confidence 9999999998863 2345577889999999876533 33334444433332222 2223333322222 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 480 VPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSI 559 (1303)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~ 559 (1303)
+.+..+..++.++..++.++..+++.+.+.|.++|+++||.|++|+.+.+++++..++..+...+..........+....
T Consensus 155 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (544)
T TIGR01842 155 VGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYF 234 (544)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22334455666777778888899999999999999999999999999999998877776655544444333332222222
Q ss_pred hH--HhHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 000746 560 PV--VVTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPNPPLEPE 637 (1303)
Q Consensus 560 ~~--~~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~ 637 (1303)
.. .+.++++|++.+..|.+|+|.+++.+.++..+..|+..+...+..+.++..+.+|+.++++.+++... ..+..+.
T Consensus 235 ~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~-~~~~~~~ 313 (544)
T TIGR01842 235 RIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP-AMPLPEP 313 (544)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC-CCCCCCC
Confidence 11 23345678888888999999999999999999999999999999999999999999999976543211 1111112
Q ss_pred CCcEEEEeeEEEeCCC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcCe
Q 000746 638 LPAVSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRGT 704 (1303)
Q Consensus 638 ~~~i~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~~ 704 (1303)
.+.++++|++|+|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|.+|.+.. +++.
T Consensus 314 ~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~ 393 (544)
T TIGR01842 314 EGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKH 393 (544)
T ss_pred CCeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhh
Confidence 3469999999999754 47999999999999999999999999999999999999999985321 2457
Q ss_pred EEEEccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH--
Q 000746 705 VAYVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN-- 781 (1303)
Q Consensus 705 iayv~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~-- 781 (1303)
++||||+|++|++|++|||.++.+ .++++++++++.++++++++.+|+|++|.+||+|.+||||||||++||||+++
T Consensus 394 i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~ 473 (544)
T TIGR01842 394 IGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDP 473 (544)
T ss_pred eEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999997665 78999999999999999999999999999999999999999999999999653
Q ss_pred ---------------------HHHhHhc-CCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHh
Q 000746 782 ---------------------SCIKEEL-RGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 782 ---------------------~~i~~~~-~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
+.+.+.. +++|+|++|||++.+..||+|++|++|++++.|+|+++.+
T Consensus 474 ~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 474 KLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 2344433 5799999999999999999999999999999999999864
No 35
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=1.6e-55 Score=547.91 Aligned_cols=484 Identities=22% Similarity=0.276 Sum_probs=355.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 326 GGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQ-RGDPAWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFRLRSTLVA 404 (1303)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~L~~ 404 (1303)
++.++..+++.++..++..+.|++++.++|.+. .+........++..+++..++..+......+...+.+.++...++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 81 (529)
T TIGR02857 2 RRALALLGLLGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRE 81 (529)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666777888888999999999999999874 3222111111111111111111121111112234677888889999
Q ss_pred HHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 000746 405 AIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQ-QLHGLWSAPFRITLSMVLLY---QQLGVASLLGSLMLVLMV 480 (1303)
Q Consensus 405 ~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~-~~~~~~~~~~~i~~~~~~l~---~~lg~~~l~~~~~~~~~~ 480 (1303)
.+|+|.++.+....++.++|++++++++|++.+++... .+..++...+.+++++++++ +.+++..+++. ++..
T Consensus 82 ~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~---~l~~ 158 (529)
T TIGR02857 82 RLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTA---PLIP 158 (529)
T ss_pred HHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHH
Confidence 99999999999888899999999999999999998653 34444444444444433332 22222222211 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000746 481 PLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIP 560 (1303)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~ 560 (1303)
.+..++.++.++..++..+..++..+.+.|.++|+++||.|+.|+.+.+++++..++..+...+..........+.....
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (529)
T TIGR02857 159 IFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFA 238 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12234556666777777888889999999999999999999999999999987666544443333333332222222221
Q ss_pred HH--hHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 000746 561 VV--VTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPNPPLEPEL 638 (1303)
Q Consensus 561 ~~--~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~ 638 (1303)
.+ +.++.++++.+..|.++.+.+++.+.+...+..|+..+...+..+.++..+++|+.++++.+++.....+...+..
T Consensus 239 ~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~~~~~~~~ 318 (529)
T TIGR02857 239 TLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKAPVTAAPA 318 (529)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcCCCCCCC
Confidence 11 1122344455557889999999999999999999999999999999999999999999974432111111111122
Q ss_pred CcEEEEeeEEEeCCCC-CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcCeE
Q 000746 639 PAVSIKNGNFSWDSKS-PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRGTV 705 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~-~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~~i 705 (1303)
+.|+++|++|+|++++ ++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+.. +++++
T Consensus 319 ~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i 398 (529)
T TIGR02857 319 PSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQI 398 (529)
T ss_pred CeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhhe
Confidence 4799999999998653 7999999999999999999999999999999999999999874421 24469
Q ss_pred EEEccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH---
Q 000746 706 AYVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN--- 781 (1303)
Q Consensus 706 ayv~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~--- 781 (1303)
+||||+|++|++||||||.++.+ .++++++++++.++++++++.+|+|+||.+||+|.+||||||||++||||+++
T Consensus 399 ~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ 478 (529)
T TIGR02857 399 AWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAP 478 (529)
T ss_pred EEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999875 68899999999999999999999999999999999999999999999999653
Q ss_pred --------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEE
Q 000746 782 --------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILV 812 (1303)
Q Consensus 782 --------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l 812 (1303)
+.+.+..+++|+|+||||++.++.||+|++|
T Consensus 479 ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 479 LLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred EEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 2344555789999999999999999999985
No 36
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-55 Score=500.63 Aligned_cols=505 Identities=24% Similarity=0.333 Sum_probs=374.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc--CCcchHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 333 GLFKIGNDLSQFVGPVLLNHLLQSMQR--GDPAWIGYIYA---FLIFVGVSFGVLTEAQYFQNVWRVGFRLRSTLVAAIF 407 (1303)
Q Consensus 333 ~~~~~~~~~~~~~~p~ll~~li~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~L~~~i~ 407 (1303)
..+.+...++....|++++.+++.+.. +.+.......+ ..+++...-..+...+-+ ....+..+.-......+|
T Consensus 36 l~~l~~aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~-vfa~v~q~~iR~~~~~vf 114 (591)
T KOG0057|consen 36 LGLLLGAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNF-VFAKVAQRVIRDSSSDVF 114 (591)
T ss_pred HHHHHhhhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 334444467777889999999998853 22211111111 111111111111111111 112445566666777899
Q ss_pred HHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 000746 408 RKTLRLTHEARKGFPSGKVTNMITTDANALQQISQ-QLHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLVLMVP-LQTF 485 (1303)
Q Consensus 408 ~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~~~~~~~-~~~~ 485 (1303)
++.+.+....+.+..+|++.+.|..-...|..++. .+..++...+++.+....++...|....+..++.+.... +...
T Consensus 115 ~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~ 194 (591)
T KOG0057|consen 115 RHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIV 194 (591)
T ss_pred HHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEe
Confidence 99999999888889999999999999888888754 345566667778888888888888765443333332222 2223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HHh
Q 000746 486 IISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIP--VVV 563 (1303)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~--~~~ 563 (1303)
+...-.+.+++.+++.+...+.+-|.|.+..+||.|+-|+...+++...-.+.-+...+.....++.++....+. ..+
T Consensus 195 ~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~ 274 (591)
T KOG0057|consen 195 VTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALT 274 (591)
T ss_pred ehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHH
Confidence 344445667777888888889999999999999999999999999976655433333333333333333322211 112
Q ss_pred HHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcEEE
Q 000746 564 TVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPNPPLEPELPAVSI 643 (1303)
Q Consensus 564 ~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~ 643 (1303)
.+...+..-+..+.+|.+......++...+..|+..+...+..+.++..-++-+....+.++.......+.....+.|+|
T Consensus 275 ~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~~~~i~~~~~~I~F 354 (591)
T KOG0057|consen 275 FIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEAALPIELFGGSIEF 354 (591)
T ss_pred HHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhccCCcccCCCcEEE
Confidence 22233334455678999999999999999999999999999998888887766655444333221111223333456999
Q ss_pred EeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcCeEEEEccC
Q 000746 644 KNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRGTVAYVPQI 711 (1303)
Q Consensus 644 ~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~~iayv~Q~ 711 (1303)
+||+|.|++++++|+++||+|++||++||+|+|||||||++++|+++++ .+|.+.. +|+.|||||||
T Consensus 355 ~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd 433 (591)
T KOG0057|consen 355 DDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQD 433 (591)
T ss_pred EeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCc
Confidence 9999999988889999999999999999999999999999999999999 7875432 56789999999
Q ss_pred cccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHHH--------
Q 000746 712 SWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFNS-------- 782 (1303)
Q Consensus 712 p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~~-------- 782 (1303)
..|||+||.+||.+|++ .++|+..++++..++++-+..+|+|++|.|||+|..|||||||||+||||++++
T Consensus 434 ~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DE 513 (591)
T KOG0057|consen 434 SVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDE 513 (591)
T ss_pred ccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecC
Confidence 99999999999999997 578899999999999999999999999999999999999999999999997542
Q ss_pred ---------------HHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchHHHHHHHH
Q 000746 783 ---------------CIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLMEN 839 (1303)
Q Consensus 783 ---------------~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~ 839 (1303)
.+.+...+||+|+|.||+++++++|+|+++++|++.+.|+|+||++.++.|.+++..
T Consensus 514 aTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~~~~w~~ 585 (591)
T KOG0057|consen 514 ATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLWTT 585 (591)
T ss_pred cccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHHHHHhcc
Confidence 244566899999999999999999999999999999999999999988888888753
No 37
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=2.5e-55 Score=593.36 Aligned_cols=445 Identities=20% Similarity=0.223 Sum_probs=341.5
Q ss_pred HHHHHHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 397 RLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQ-QLHGLWSAPFRITLSMVLLYQQLGVASLLGSLM 475 (1303)
Q Consensus 397 ~lr~~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~ 475 (1303)
+....+...+|++.++.+...+++.++|+++|++++|++.+++.+. .+..++...+.++.+++++....++..++.+.+
T Consensus 1028 ~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~~~i~~ 1107 (1560)
T PTZ00243 1028 RGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLVALVPC 1107 (1560)
T ss_pred HHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345667788999999999999999999999999999999998643 344455555555544444333322222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 476 LVLMVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFI 555 (1303)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~ 555 (1303)
.++...+..++.+..++.++......++..+.++|.++|+++||+|++|+.+.+++.+..+...+..........+....
T Consensus 1108 ~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~ 1187 (1560)
T PTZ00243 1108 GYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVR 1187 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222233445555666667677778888999999999999999999999999998777666555444433333443333
Q ss_pred HHHHhHHh--HHhhhhhhh--hhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-C-
Q 000746 556 LNSIPVVV--TVVSFGTFT--LLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERIL-M- 629 (1303)
Q Consensus 556 ~~~~~~~~--~~~~f~~~~--~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~-~- 629 (1303)
......++ .++.++++. ...+.++++.+..++.+...+..|+..+...+..+..++.|++|+.++++..+... .
T Consensus 1188 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~ 1267 (1560)
T PTZ00243 1188 VEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPE 1267 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence 22221111 111222222 22345788888888888888999999999999999999999999999996322110 0
Q ss_pred -------------------------C-CC----CCCCCCCcEEEEeeEEEeCCCC-CccceeeeEecCCcEEEEEcCCCC
Q 000746 630 -------------------------P-NP----PLEPELPAVSIKNGNFSWDSKS-PTLSNINLDIPVGSLVAIVGGTGE 678 (1303)
Q Consensus 630 -------------------------~-~~----~~~~~~~~i~~~~~~f~~~~~~-~~L~~i~l~i~~G~~~~ivG~sGs 678 (1303)
+ .+ +..+..+.|+|+||+|+|+++. ++|+|+||+|++||+++|||+|||
T Consensus 1268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGS 1347 (1560)
T PTZ00243 1268 LDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGS 1347 (1560)
T ss_pred ccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCC
Confidence 0 00 0111234699999999997654 599999999999999999999999
Q ss_pred ChHHHHHHHhcCCCCCCCceEE------------EcCeEEEEccCcccccccHHHHHccCCCCChhhHHHHHHHHhhHHH
Q 000746 679 GKTSLVSAMLGELPPLKDASVV------------IRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHD 746 (1303)
Q Consensus 679 GKSTLl~~llg~~~~~~g~~~~------------~~~~iayv~Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~ 746 (1303)
|||||+++|+|+++|.+|.+.. +|++|+||||+|.||+|||||||..+.++++++++++++.|+++++
T Consensus 1348 GKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~ 1427 (1560)
T PTZ00243 1348 GKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRER 1427 (1560)
T ss_pred CHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHH
Confidence 9999999999999999875421 3568999999999999999999998888999999999999999999
Q ss_pred hhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH------------------------HHHhHhcCCCEEEEEecCCCc
Q 000746 747 LDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN------------------------SCIKEELRGKTRILVTNQLHF 802 (1303)
Q Consensus 747 i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~------------------------~~i~~~~~~~TvilvtH~~~~ 802 (1303)
++.+|+|+||.|||+|.|||||||||||||||+++ +.+++..+++|+|+||||+++
T Consensus 1428 I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~t 1507 (1560)
T PTZ00243 1428 VASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHT 1507 (1560)
T ss_pred HhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHH
Confidence 99999999999999999999999999999999874 234455689999999999999
Q ss_pred ccccCEEEEEeCCEEEEecCHHHHHhc-chHHHHHHHHhc
Q 000746 803 LPHVDRIILVSEGMIKEEGSFEELSKH-GRLFQKLMENAG 841 (1303)
Q Consensus 803 l~~aD~ii~l~~G~i~~~g~~~~l~~~-~~~~~~l~~~~~ 841 (1303)
+..||+|++|++|+|+|.|+|+||+++ ++.|+++++..+
T Consensus 1508 i~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~ 1547 (1560)
T PTZ00243 1508 VAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALG 1547 (1560)
T ss_pred HHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 999999999999999999999999974 789999987654
No 38
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.2e-55 Score=595.44 Aligned_cols=449 Identities=19% Similarity=0.255 Sum_probs=334.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 392 WRVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQ-QLHGLWSAPFRITLSMVLLYQQLGVASL 470 (1303)
Q Consensus 392 ~~~~~~lr~~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~lg~~~l 470 (1303)
.+.+.+.-..++..++++.++.+...+++.++|+++|++++|++.+++.+. .+..+....+.++.+++++.....+..+
T Consensus 975 ~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~ 1054 (1495)
T PLN03232 975 ISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLW 1054 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777788999999999999999999999999999999998644 3444444444444443333222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 471 LGSLMLVLMVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSA 550 (1303)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~ 550 (1303)
+.+.+.+++..+..+..+..++.++.....+++..+.++|.++|+++||+|++|+.+.++.++..+...+..........
T Consensus 1055 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1134 (1495)
T PLN03232 1055 AIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNR 1134 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111222223333444556666677778888999999999999999999999888777666655544333222333
Q ss_pred HHHHHHHHHhHHhHHhhhhhhhhh-CCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 551 FNSFILNSIPVVVTVVSFGTFTLL-GGDLT-----PARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAE 624 (1303)
Q Consensus 551 ~~~~~~~~~~~~~~~~~f~~~~~~-~~~l~-----~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~ 624 (1303)
+..........++ +...+.+.+. .+.+. ++.+...+++...+..|+..+...+..+..+.+|.+|+.++++.+
T Consensus 1135 wl~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~ 1213 (1495)
T PLN03232 1135 WLTIRLETLGGVM-IWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLP 1213 (1495)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3322222211111 1111222222 23221 222333455666677889999999999999999999999999765
Q ss_pred hhhcC--C--C-CCCCCCCCcEEEEeeEEEeCCC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCce
Q 000746 625 ERILM--P--N-PPLEPELPAVSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDAS 698 (1303)
Q Consensus 625 ~~~~~--~--~-~~~~~~~~~i~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~ 698 (1303)
++... + . ++.++..+.|+++|++|+|+++ +++|+|+||+|++||+++|||+||||||||+++|+|+++|++|.+
T Consensus 1214 ~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I 1293 (1495)
T PLN03232 1214 SEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRI 1293 (1495)
T ss_pred ccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceE
Confidence 43211 1 1 1112334579999999999654 579999999999999999999999999999999999999999754
Q ss_pred EE------------EcCeEEEEccCcccccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCc
Q 000746 699 VV------------IRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNIS 766 (1303)
Q Consensus 699 ~~------------~~~~iayv~Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LS 766 (1303)
.. +|++|+||||+|.||+|||||||.+++++++++++++++.|+++++++.+|+|+||.|||+|.+||
T Consensus 1294 ~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LS 1373 (1495)
T PLN03232 1294 MIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFS 1373 (1495)
T ss_pred EECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCC
Confidence 21 356899999999999999999999998999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCH
Q 000746 767 GGQKQRVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSF 823 (1303)
Q Consensus 767 GGQkQRiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~ 823 (1303)
||||||||||||+++ +.+++..+++|+|+||||++++..||+|++|++|+|+|.|+|
T Consensus 1374 gGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~ 1453 (1495)
T PLN03232 1374 VGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSP 1453 (1495)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999653 456666789999999999999999999999999999999999
Q ss_pred HHHHhcc-hHHHHHHHHhc
Q 000746 824 EELSKHG-RLFQKLMENAG 841 (1303)
Q Consensus 824 ~~l~~~~-~~~~~l~~~~~ 841 (1303)
+||++++ +.|+++++.++
T Consensus 1454 ~eLl~~~~~~f~~l~~~~~ 1472 (1495)
T PLN03232 1454 QELLSRDTSAFFRMVHSTG 1472 (1495)
T ss_pred HHHHhCCCCHHHHHHHHhC
Confidence 9999876 58999987654
No 39
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-57 Score=501.45 Aligned_cols=505 Identities=21% Similarity=0.326 Sum_probs=360.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc--hHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 332 GGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPA--WIGYIYAFLIFVGV---SFGVLTEAQYFQNVWRVGFRLRSTLVAAI 406 (1303)
Q Consensus 332 ~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~lr~~L~~~i 406 (1303)
..++.++.-++....|.+.+.+++.+..+... +..+.+.++-++-- .-+.+...+.+ .+.++..-.-..+-..+
T Consensus 220 cl~ll~i~rli~~~~pi~~k~iv~~ltap~~~~~~~~~~~v~L~flqg~gtgsG~~~nlRtf-LWi~VqQyttR~ie~~l 298 (790)
T KOG0056|consen 220 CLFLLIIGRLINVSLPILSKWIVDELTAPDTFQYSLVFLYVFLKFLQGGGTGSGFLNNLRTF-LWIPVQQYTTREIETEL 298 (790)
T ss_pred HHHHHHHHHHHhhhhHHhHHHHHHhhcCcchhhHHHHHHHHHHHHHhcCCccccchhhhhee-EEEEhhHhHHHHHHHHH
Confidence 34444555566777899999999988743321 11222222222110 00111111110 11123333334455678
Q ss_pred HHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Q 000746 407 FRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQ-LHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLVLMV---PL 482 (1303)
Q Consensus 407 ~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~-~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~~~~~~---~~ 482 (1303)
|+|...++....-+..+|+++..|....+.+. +..+ +..+....+.+++++++++....+ +.|+++++.+. -+
T Consensus 299 frHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~--wFgLIVfl~m~lY~~~ 375 (790)
T KOG0056|consen 299 FRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNI--WFGLIVFLMMLLYCYV 375 (790)
T ss_pred HHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhH--HHHHHHHHHHHHHhhe
Confidence 88888888887778889999998887766665 3333 233334445566665544433322 22332222111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-
Q 000746 483 QTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIPV- 561 (1303)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~- 561 (1303)
...+...-.+++++...+-.+..+.-.+.+-+.+++|.|+.|+...+++.+.-.+..+.-+|......+.+...+.+-.
T Consensus 376 Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~l 455 (790)
T KOG0056|consen 376 TIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGL 455 (790)
T ss_pred eeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 1112222233444443333333445568899999999999999988888776665555444443332332222222111
Q ss_pred -HhHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CC-CCCCCCC
Q 000746 562 -VVTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILM-PN-PPLEPEL 638 (1303)
Q Consensus 562 -~~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~-~~-~~~~~~~ 638 (1303)
+.....+.+|.+..+.+++|.......++..+..|++.+...+..++...+-.+|+.++++++++..+ |. +|.....
T Consensus 456 gll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~ 535 (790)
T KOG0056|consen 456 GLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQ 535 (790)
T ss_pred HHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccccC
Confidence 11112234566667889999988888899999999999999999999999999999999987765432 21 2333456
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcCeEE
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRGTVA 706 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~~ia 706 (1303)
+.|+|+||+|.|++++|+|+||||+++||+.+|+|||||+||||++++|.++++..+|.+.. +|++||
T Consensus 536 G~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IG 615 (790)
T KOG0056|consen 536 GKIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIG 615 (790)
T ss_pred CeEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcC
Confidence 78999999999999999999999999999999999999999999999999999999875421 466899
Q ss_pred EEccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH----
Q 000746 707 YVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN---- 781 (1303)
Q Consensus 707 yv~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~---- 781 (1303)
.||||..|||+||..||.++++ .++|++.++.++++.++.|-.+|+|++|.|||+|..||||+|||+|+||++++
T Consensus 616 VVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~i 695 (790)
T KOG0056|consen 616 VVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSI 695 (790)
T ss_pred cccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcE
Confidence 9999999999999999999997 57888899999999999999999999999999999999999999999999753
Q ss_pred -------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhc-chHHHHHHHHh
Q 000746 782 -------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKH-GRLFQKLMENA 840 (1303)
Q Consensus 782 -------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~-~~~~~~l~~~~ 840 (1303)
.++.+...++|.|+|+||++++-+||.|+++++|+|+|.|+|+||.++ +|.|+++.+.+
T Consensus 696 IlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~q 774 (790)
T KOG0056|consen 696 ILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQAQ 774 (790)
T ss_pred EEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHHHHH
Confidence 344555689999999999999999999999999999999999999987 89999998644
No 40
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.1e-55 Score=557.75 Aligned_cols=446 Identities=22% Similarity=0.288 Sum_probs=367.1
Q ss_pred HHHHHHHHHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 394 VGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQ-QLHGLWSAPFRITLSMVLLYQQLGVASLLG 472 (1303)
Q Consensus 394 ~~~~lr~~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~lg~~~l~~ 472 (1303)
.+.+.-..|...++++.++-|...++.+++|+|+||++.|++.+++-+. .+..+....++++..+.++.....+..++.
T Consensus 885 ~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~ 964 (1381)
T KOG0054|consen 885 GGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAI 964 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHH
Confidence 3444445555556666677777778889999999999999999998544 445555666666666555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 473 SLMLVLMVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFN 552 (1303)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~ 552 (1303)
+.+.++++.++.++.+..++..+-....++.-.++++|.++|+.+||+|+.|++|.++..+..+...+..........|.
T Consensus 965 ~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWl 1044 (1381)
T KOG0054|consen 965 IPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWL 1044 (1381)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 66666666677777777888888888889999999999999999999999999999999988888777766666666666
Q ss_pred HHHHHHHhHHhHHhhhhhhhhhCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---c
Q 000746 553 SFILNSIPVVVTVVSFGTFTLLGGD-LTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERI---L 628 (1303)
Q Consensus 553 ~~~~~~~~~~~~~~~f~~~~~~~~~-l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~---~ 628 (1303)
.+-...+..++.+.+....++..+. .++|.+-.++++...+..-++.+......+....+|.+||.+|.+.+++. .
T Consensus 1045 a~Rle~ig~~~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~ 1124 (1381)
T KOG0054|consen 1045 AVRLELLGNLVVLIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEI 1124 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCC
Confidence 6655555443322222222222222 77999999999999999999999999999999999999999999865441 1
Q ss_pred CC--CCCCCCCCCcEEEEeeEEEeCCC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-----
Q 000746 629 MP--NPPLEPELPAVSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----- 700 (1303)
Q Consensus 629 ~~--~~~~~~~~~~i~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----- 700 (1303)
.. .|+.+|..+.|+|+|++.+|.++ +++|+||||+|++||+++|||++|||||||+++|.|+.+|.+|.+..
T Consensus 1125 ~~~~pp~~WP~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI 1204 (1381)
T KOG0054|consen 1125 EESRPPPSWPSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDI 1204 (1381)
T ss_pred cCCCCCCCCCCCCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeec
Confidence 11 24567888899999999999766 57999999999999999999999999999999999999998875432
Q ss_pred -------EcCeEEEEccCcccccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHH
Q 000746 701 -------IRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRV 773 (1303)
Q Consensus 701 -------~~~~iayv~Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRi 773 (1303)
+|++++.+||||.||+||+|.|+....+++|+++|++++.|+|.+.++.+|+|+|++|.|+|.|+|-||||.+
T Consensus 1205 ~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLl 1284 (1381)
T KOG0054|consen 1205 SKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLL 1284 (1381)
T ss_pred ccccHHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHH
Confidence 4779999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-----------------------HHHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhc-
Q 000746 774 SMARAVF-----------------------NSCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKH- 829 (1303)
Q Consensus 774 aLARAl~-----------------------~~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~- 829 (1303)
|||||++ ++.|++.++++|||.|+||++++.++|||+|||+|+|+|.|+|++|+++
T Consensus 1285 CLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~ 1364 (1381)
T KOG0054|consen 1285 CLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDK 1364 (1381)
T ss_pred HHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhCC
Confidence 9999954 4668889999999999999999999999999999999999999999976
Q ss_pred chHHHHHHHH
Q 000746 830 GRLFQKLMEN 839 (1303)
Q Consensus 830 ~~~~~~l~~~ 839 (1303)
++.|.+++.+
T Consensus 1365 ~S~f~~~l~~ 1374 (1381)
T KOG0054|consen 1365 DSLFSSLLKE 1374 (1381)
T ss_pred cchHHHHHHH
Confidence 5666655543
No 41
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=3.8e-54 Score=484.38 Aligned_cols=503 Identities=24% Similarity=0.338 Sum_probs=386.4
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 316 WLLRALNNSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVG 395 (1303)
Q Consensus 316 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (1303)
....+....++..|+..++++.+.+++.+..|+++-++.|.+-...+...-..+.++.....++..+....--....|++
T Consensus 12 ~~~~a~l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig 91 (580)
T COG4618 12 NLLAAVLAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRSVPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIG 91 (580)
T ss_pred chhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777888888999999999999999999999998865443221122222111111222222222223356889
Q ss_pred HHHHHHHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHHH--HHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 000746 396 FRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQ--LHGLWS---APFRITLSMVLLYQQLGVASL 470 (1303)
Q Consensus 396 ~~lr~~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~--~~~~~~---~~~~i~~~~~~l~~~lg~~~l 470 (1303)
.++...|...+|...++.+..........+. -+|.+++.++... ...++. .|+.+ ..++++...+|+.++
T Consensus 92 ~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~----LrDL~qvR~Fltg~g~~A~fDaPW~P~yl-~v~fl~Hp~lG~~a~ 166 (580)
T COG4618 92 ERLDRQLNGPVFAASFSAPLLRRGSGDGLQP----LRDLDQVRQFLTGTGLTAFFDAPWMPLYL-AVIFLFHPWLGLIAL 166 (580)
T ss_pred HHHHHHhccHHHHHHHhhHHhhcCCCccccc----hhhHHHHHHHHcCCCcchhcCCchHHHHH-HHHHHHHHHHHHHHH
Confidence 9999999999999887554432211222222 3788888887532 222333 34433 345667778999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 471 LGSLMLVLMVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSA 550 (1303)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~ 550 (1303)
+|.++++.+..++-... ++-.++..+...++....+...++.++|+++|+.....+++.+.....++...+..-...
T Consensus 167 ~ga~iLv~la~ln~~~t---~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~ 243 (580)
T COG4618 167 AGAIILVVLALLNERAT---RKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNG 243 (580)
T ss_pred HHHHHHHHHHHHHHHHh---hccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 98888877766655444 344456667778888999999999999999999999999999888877776665554444
Q ss_pred HHHHHHHHHhHH--hHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 000746 551 FNSFILNSIPVV--VTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERIL 628 (1303)
Q Consensus 551 ~~~~~~~~~~~~--~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~ 628 (1303)
..+......-++ ..++..|+|+++.+++|+|.+++.-.+......|+......+.++..++.|.+|++++|...+...
T Consensus 244 ~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~ 323 (580)
T COG4618 244 AFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAA 323 (580)
T ss_pred HHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 433333332222 346778899999999999999999888889999999999999999999999999999998654322
Q ss_pred CCCCCCCCCCCcEEEEeeEEEeCCCC-CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE------
Q 000746 629 MPNPPLEPELPAVSIKNGNFSWDSKS-PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI------ 701 (1303)
Q Consensus 629 ~~~~~~~~~~~~i~~~~~~f~~~~~~-~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~------ 701 (1303)
..- +.....+.+.++++++.-|+.+ |+++|+||++++||-++|+||||||||||.++|.|..+|.+|. +.+
T Consensus 324 ~~m-~LP~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~-VRLDga~l~ 401 (580)
T COG4618 324 ERM-PLPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGS-VRLDGADLR 401 (580)
T ss_pred CCC-CCCCCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCc-EEecchhhh
Confidence 111 1122346799999999876554 8999999999999999999999999999999999999999975 433
Q ss_pred -------cCeEEEEccCcccccccHHHHHc-cCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHH
Q 000746 702 -------RGTVAYVPQISWIFNATLRKNIL-FGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRV 773 (1303)
Q Consensus 702 -------~~~iayv~Q~p~l~~~TireNI~-~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRi 773 (1303)
.++|||.||+-.||+|||+|||. |+.+.|++++-++.+.++.+|-|-.+|+||||.|||+|..|||||||||
T Consensus 402 qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRI 481 (580)
T COG4618 402 QWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRI 481 (580)
T ss_pred cCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHH
Confidence 35799999999999999999998 7778999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-----------------------HHHhH-hcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHh
Q 000746 774 SMARAVFN-----------------------SCIKE-ELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 774 aLARAl~~-----------------------~~i~~-~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
+||||+|- ++|.+ ..+|.|+|+||||++.+..+|+|++|+||++...|+-+|..+
T Consensus 482 aLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa 560 (580)
T COG4618 482 ALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLA 560 (580)
T ss_pred HHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHH
Confidence 99999762 12222 237999999999999999999999999999999999998875
No 42
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=5.6e-53 Score=570.84 Aligned_cols=448 Identities=16% Similarity=0.214 Sum_probs=341.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 392 WRVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQ-QLHGLWSAPFRITLSMVLLYQQLGVASL 470 (1303)
Q Consensus 392 ~~~~~~lr~~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~lg~~~l 470 (1303)
.+.+.+.-..+...++++.++.+...++..++|+++|++++|++.+++.+. .+..++...+.+++.++++....++..+
T Consensus 950 ~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l 1029 (1490)
T TIGR01271 950 VHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFI 1029 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777888889999999888899999999999999999998543 3445555555555555444443333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 471 LGSLMLVLMVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSA 550 (1303)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~ 550 (1303)
+.+.++++++.+..++.+..++.++.....+++..+.+.|.++|+.+||+||+|+.+.+++.+..+...+..........
T Consensus 1030 ~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1109 (1490)
T TIGR01271 1030 AAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLR 1109 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223333333445555556666777777888899999999999999999999999999988776654433332222233
Q ss_pred HHHHHHHHHhHHhHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 000746 551 FNSFILNSIPVVVTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMP 630 (1303)
Q Consensus 551 ~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~ 630 (1303)
+.......+..+..+. .+...+.....+++.+..+++++..+..++..+...+..+..+..|.+||.++++.+++...+
T Consensus 1110 wl~~~~~~i~~~~~~~-~~~l~~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~ 1188 (1490)
T TIGR01271 1110 WFQMRIDIIFVFFFIA-VTFIAIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRP 1188 (1490)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 3322222211111100 011111112345566666666777778888888899999999999999999999754432110
Q ss_pred ------------------C-CCCCCCCCcEEEEeeEEEeCCC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcC
Q 000746 631 ------------------N-PPLEPELPAVSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGE 690 (1303)
Q Consensus 631 ------------------~-~~~~~~~~~i~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~ 690 (1303)
. ++.++..+.|+|+|++|+|+++ +++|+|+||+|++||+++|||+||||||||+++|+|+
T Consensus 1189 ~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl 1268 (1490)
T TIGR01271 1189 SGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRL 1268 (1490)
T ss_pred cccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhh
Confidence 0 1122344679999999999753 5799999999999999999999999999999999999
Q ss_pred CCCCCCceEE------------EcCeEEEEccCcccccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccc
Q 000746 691 LPPLKDASVV------------IRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEI 758 (1303)
Q Consensus 691 ~~~~~g~~~~------------~~~~iayv~Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~i 758 (1303)
++ .+|.+.. +|++|+||||+|.||+|||||||....++++++++++++.|+|.+.++.+|+|+||.|
T Consensus 1269 ~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v 1347 (1490)
T TIGR01271 1269 LS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVL 1347 (1490)
T ss_pred cC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCcccccccc
Confidence 97 5664321 3568999999999999999999998878999999999999999999999999999999
Q ss_pred cCCCCCCchHHHHHHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCC
Q 000746 759 GERGVNISGGQKQRVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEG 815 (1303)
Q Consensus 759 ge~G~~LSGGQkQRiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G 815 (1303)
||+|.+||||||||||||||+++ +.+++..+++|+|+||||++++..+|+|++|++|
T Consensus 1348 ~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G 1427 (1490)
T TIGR01271 1348 VDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGS 1427 (1490)
T ss_pred ccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECC
Confidence 99999999999999999999653 4566677899999999999999999999999999
Q ss_pred EEEEecCHHHHHhcchHHHHHHHHhc
Q 000746 816 MIKEEGSFEELSKHGRLFQKLMENAG 841 (1303)
Q Consensus 816 ~i~~~g~~~~l~~~~~~~~~l~~~~~ 841 (1303)
+|+|.|+|++|.++++.|++++++.+
T Consensus 1428 ~ivE~g~p~~Ll~~~~~f~~l~~~~~ 1453 (1490)
T TIGR01271 1428 SVKQYDSIQKLLNETSLFKQAMSAAD 1453 (1490)
T ss_pred EEEEeCCHHHHHcCCcHHHHHHHHhC
Confidence 99999999999988899999987654
No 43
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=3.6e-49 Score=491.01 Aligned_cols=485 Identities=14% Similarity=0.121 Sum_probs=339.3
Q ss_pred HHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 321 LNN-SFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFRLR 399 (1303)
Q Consensus 321 l~~-~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 399 (1303)
+++ .+++.++.++++.++..++..+.|.+++.+++....... .....++++..+..++. . ...| ...+.+.++.
T Consensus 11 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~-~-~~~~--~~~~~~~~~~ 85 (555)
T TIGR01194 11 LLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLGQ-GSLFSFGGLCLLALLFR-I-GADI--FPAYAGMHII 85 (555)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc-hHHHHHHHHHHHHHHHH-H-HHHH--HHHHHHHHHH
Confidence 455 677778888888888889999999999988764211111 11111111111111111 1 1112 2346778888
Q ss_pred HHHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 400 STLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQLHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLVLM 479 (1303)
Q Consensus 400 ~~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~~~~~ 479 (1303)
..++..+|+|.++++...+++.++|++++++++|++.+++....+..++...+.+++++++++..-+..+++.++.+++.
T Consensus 86 ~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~~~~ 165 (555)
T TIGR01194 86 ANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFIFPPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIG 165 (555)
T ss_pred HHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 89999999999999998888899999999999999999987654444444444444444433332222222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 480 VPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEK--SFQSRVQSIRDDELSWFRKAQFLSAFNSFILN 557 (1303)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~--~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~ 557 (1303)
+.+..+..++.++..++..+..++..+.+.|.++|++++|.++.++ ...+++++..++..+...+..........+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (555)
T TIGR01194 166 TAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAENFGQ 245 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223344455666666777778888999999999999999999954 34455554444333322222222211111111
Q ss_pred HHhHHhH--HhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cC---CC
Q 000746 558 SIPVVVT--VVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERI-LM---PN 631 (1303)
Q Consensus 558 ~~~~~~~--~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~-~~---~~ 631 (1303)
....+.. .+.++.+ .+.++.+.+++.+.+...+..|+..+...+..+.++.+|++|+.++++.++.. .. +.
T Consensus 246 ~~~~~~~~~~~~~~~~---~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~ 322 (555)
T TIGR01194 246 LLFFLLIGCALFAAAM---FASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSD 322 (555)
T ss_pred HHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccc
Confidence 1111111 1111111 26799999999999999999999999999999999999999999998642211 00 00
Q ss_pred C------CCCCCCCcEEEEeeEEEeCCC----CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-
Q 000746 632 P------PLEPELPAVSIKNGNFSWDSK----SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV- 700 (1303)
Q Consensus 632 ~------~~~~~~~~i~~~~~~f~~~~~----~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~- 700 (1303)
. +.......|+++|++|+|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+..
T Consensus 323 ~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~ 402 (555)
T TIGR01194 323 ADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLD 402 (555)
T ss_pred cccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEC
Confidence 0 001123469999999999753 36999999999999999999999999999999999999999985321
Q ss_pred -----------EcCeEEEEccCcccccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHH
Q 000746 701 -----------IRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQ 769 (1303)
Q Consensus 701 -----------~~~~iayv~Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQ 769 (1303)
+++.++||+|+|++|++|+++|+ ..+.++++.+++++.++++++++.+|+|++|. .+|||||
T Consensus 403 g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~--~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~LSgGq 475 (555)
T TIGR01194 403 GAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE--GEHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TALSTGQ 475 (555)
T ss_pred CEECCCCCHHHHHhhCcEEccChhhhhhhhhccc--ccchhHHHHHHHHHHcCCchhhcccccccCCc-----ccCCHHH
Confidence 23569999999999999999995 23467888999999999999999999999994 7899999
Q ss_pred HHHHHHHHHHHH-----------------------HHHh-Hh-cCCCEEEEEecCCCcccccCEEEEEeCCEEEEe
Q 000746 770 KQRVSMARAVFN-----------------------SCIK-EE-LRGKTRILVTNQLHFLPHVDRIILVSEGMIKEE 820 (1303)
Q Consensus 770 kQRiaLARAl~~-----------------------~~i~-~~-~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~ 820 (1303)
||||+||||++. +.+. .. .+++|+|+||||++.+..||+|++|++|++++.
T Consensus 476 ~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 476 QKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 999999999653 1222 22 358999999999999999999999999999874
No 44
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-50 Score=439.53 Aligned_cols=440 Identities=25% Similarity=0.364 Sum_probs=338.7
Q ss_pred HHHHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 399 RSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQ-LHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLV 477 (1303)
Q Consensus 399 r~~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~-~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~~~ 477 (1303)
-..+....|.+..+++.....+..+|.+..-+....+.|+.+..+ +..+....+++.+..+++|+..|+......++.+
T Consensus 14 ~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~f~~~t~vtv 93 (497)
T COG5265 14 VRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWWFALTTLVTV 93 (497)
T ss_pred HHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccHHHHHHHHHH
Confidence 344455667788888777666667777665555555566665543 3344556678888888888888776544444444
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 478 LMVPLQTFIISKMRK-LTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFIL 556 (1303)
Q Consensus 478 ~~~~~~~~~~~~~~~-~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~ 556 (1303)
+++.+..+...-.+. ..++..++..+......+.|-+..++|.||-|+.+..++.+..+...+...+......+.++..
T Consensus 94 ~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~Ln~gQ 173 (497)
T COG5265 94 ILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNFGQ 173 (497)
T ss_pred HHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHhh
Confidence 444333222222222 2333344444455667799999999999999999999998777765554444433333333222
Q ss_pred HHHh--HHhHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CC-C
Q 000746 557 NSIP--VVVTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILM-PN-P 632 (1303)
Q Consensus 557 ~~~~--~~~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~-~~-~ 632 (1303)
..+- .+....+.+...+..+.+|.|.....-++...+..|+..+...+..+.+++.-.+++.+.++.+.+..+ ++ +
T Consensus 174 ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~pda~ 253 (497)
T COG5265 174 TAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAP 253 (497)
T ss_pred HHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccCCCCc
Confidence 2111 111223334455567899999999999999999999999999999999999999999999886654322 11 2
Q ss_pred CCC-CCCCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-----------
Q 000746 633 PLE-PELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----------- 700 (1303)
Q Consensus 633 ~~~-~~~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----------- 700 (1303)
+.. -..+.+.|+|++|.|.++.++|+++||++++|++++|||++|+||||++++|.++|++.+|.+..
T Consensus 254 ~L~~~~~g~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~ 333 (497)
T COG5265 254 PLWPVRLGAVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQ 333 (497)
T ss_pred cccccccceEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHH
Confidence 222 23457999999999999999999999999999999999999999999999999999999985432
Q ss_pred -EcCeEEEEccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHH
Q 000746 701 -IRGTVAYVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA 778 (1303)
Q Consensus 701 -~~~~iayv~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARA 778 (1303)
+|+.||.||||..|||+|+..||.+|+| .++++..++.+++++.+.++.+|+|++|.|||+|-.||||||||+|+||+
T Consensus 334 slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ 413 (497)
T COG5265 334 SLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIART 413 (497)
T ss_pred HHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHH
Confidence 3456999999999999999999999997 67899999999999999999999999999999999999999999999999
Q ss_pred HHH-----------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchHHHH
Q 000746 779 VFN-----------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQK 835 (1303)
Q Consensus 779 l~~-----------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~~ 835 (1303)
+++ ..+++..+|+|.++|+||++++..||.|+||++|+|+|.|+|+||++.+|.|++
T Consensus 414 ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~~~g~ya~ 493 (497)
T COG5265 414 ILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGGLYAE 493 (497)
T ss_pred HhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHHcCChHHH
Confidence 753 234555689999999999999999999999999999999999999999999998
Q ss_pred HHH
Q 000746 836 LME 838 (1303)
Q Consensus 836 l~~ 838 (1303)
++.
T Consensus 494 mw~ 496 (497)
T COG5265 494 MWR 496 (497)
T ss_pred Hhc
Confidence 863
No 45
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1.8e-47 Score=475.89 Aligned_cols=485 Identities=18% Similarity=0.208 Sum_probs=326.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 317 LLRALNNSFGGRFWLGGLFKIGNDLSQFVG-PVLLNHLLQSMQRGDPAWIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVG 395 (1303)
Q Consensus 317 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (1303)
+++.+++.+++.++...++.++..++.++. |++.+.++|.+... . .....++.++++..++. ....|. ..+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~~-~-~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~ 76 (547)
T PRK10522 3 LLRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADTS-L-LVLPEFLGLLLLLMAVT--LGSQLA--LTTLG 76 (547)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-c-hHHHHHHHHHHHHHHHH--HHHHHH--HHHHH
Confidence 455567778888888888888888888774 67778888865321 1 11111111111111111 111222 23566
Q ss_pred HHHHHHHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 396 FRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQLHGLWSAPFRITLSMVLLYQQLGVASLLGSLM 475 (1303)
Q Consensus 396 ~~lr~~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~ 475 (1303)
.++...++..+|+|.++++...+++.++|++++++++|++.+......+..++...+.+++++++++..-+..+++.+++
T Consensus 77 ~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~ 156 (547)
T PRK10522 77 HHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVRLPELVQGIILTLGSAAYLAWLSPKMLLVTAIW 156 (547)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 77777888899999999999888889999999999999999987655555666666666666555544333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 476 LVLMVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYA--WEKSFQSRVQSIRDDELSWFRKAQFLSAFNS 553 (1303)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~--~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~ 553 (1303)
+++.+.+..++.++.++..++.++..++..+.+.|.++|+++++..+ .++.+.+++++..++..+...+.........
T Consensus 157 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (547)
T PRK10522 157 MAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELTLNRERAEYVFENEYEPDAQEYRHHIIRADTFHLSAV 236 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 33333344566677777777888889999999999999999997332 2234555555544433322222222222111
Q ss_pred HHHHHHhHHhHHhhhhhhhhhCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 000746 554 FILNSIPVVVTVVSFGTFTLLGG---DLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMP 630 (1303)
Q Consensus 554 ~~~~~~~~~~~~~~f~~~~~~~~---~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~ 630 (1303)
....... .+.++.+.+.++ ..+.+.+.....+...+..|+..+...+..+.++..+.+|+.++++.+++...+
T Consensus 237 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~~ 312 (547)
T PRK10522 237 NWSNIMM----LGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEFP 312 (547)
T ss_pred HHHHHHH----HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 1111111 111121222211 122222222222233356899999999999999999999999987543321111
Q ss_pred CCCCCCCCCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----------
Q 000746 631 NPPLEPELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV---------- 700 (1303)
Q Consensus 631 ~~~~~~~~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~---------- 700 (1303)
.+...+..+.++++|++|+|++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+..
T Consensus 313 ~~~~~~~~~~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~ 392 (547)
T PRK10522 313 RPQAFPDWQTLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQP 392 (547)
T ss_pred cccccCcCceEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCH
Confidence 1111112246999999999986567999999999999999999999999999999999999999974321
Q ss_pred --EcCeEEEEccCcccccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHH
Q 000746 701 --IRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA 778 (1303)
Q Consensus 701 --~~~~iayv~Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARA 778 (1303)
++++|+|++|+|++|++|++|| +.+.++++.+++++.+++.++++. ++|. .+|.+||||||||++||||
T Consensus 393 ~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~~G~~LSgGq~qRl~lARa 463 (547)
T PRK10522 393 EDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-EDGR-----ISNLKLSKGQKKRLALLLA 463 (547)
T ss_pred HHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-cccC-----CCCCCCCHHHHHHHHHHHH
Confidence 2457999999999999999999 455677778888887777666542 3332 2488999999999999999
Q ss_pred HHH-----------------------HHHhHhc--CCCEEEEEecCCCcccccCEEEEEeCCEEEEe
Q 000746 779 VFN-----------------------SCIKEEL--RGKTRILVTNQLHFLPHVDRIILVSEGMIKEE 820 (1303)
Q Consensus 779 l~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~ 820 (1303)
+++ +.+.+.. +++|+|+||||++.++.||+|++|++|+++|.
T Consensus 464 l~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 464 LAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence 653 2233333 48999999999999999999999999999976
No 46
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=2e-44 Score=454.02 Aligned_cols=479 Identities=16% Similarity=0.156 Sum_probs=339.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 328 RFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIG--YIYAFLIFV-GVSFGVLTEAQYFQNVWRVGFRLRSTLVA 404 (1303)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~lr~~L~~ 404 (1303)
.++...++.++..++....|.+.+.+++.+..++..... .+..+++++ ..++.. ...|. ..+...++|..+..
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~--~~~~~--~~~~~~~~r~~l~~ 172 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINS--AIKYL--LKELKLRFRVRLTR 172 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH--HHHHH--HHHHHHHHHHHHHH
Confidence 456677778888889999999999999987654321111 111111111 111111 11222 23445566666666
Q ss_pred HHHHHHHcC----CcccccCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 000746 405 AIFRKTLRL----THEARKGFPSGKVTNMITTDANALQQISQ-QLHGLWSAPFRITLSMVLLYQQLGVASLL-GSLMLVL 478 (1303)
Q Consensus 405 ~i~~k~l~l----~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~-~~~~~~~~~~~i~~~~~~l~~~lg~~~l~-~~~~~~~ 478 (1303)
.+.++.++. +....++ .+|++.+++++|++.+.+... .+..+...++.++++++.++..+++...+ .++.+.+
T Consensus 173 ~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l 251 (659)
T TIGR00954 173 YLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFA 251 (659)
T ss_pred HHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 666665553 2222233 579999999999999988643 45566666777776777666545543322 2222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 479 MVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNS 558 (1303)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~ 558 (1303)
...+..++.++..+..++..+..++..+...|.++|+++||.|+.|+.+.+++++..++..+...+..........+...
T Consensus 252 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 331 (659)
T TIGR00954 252 TGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNI 331 (659)
T ss_pred HHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33344667777888888888888999999999999999999999999999998887777666666655555544443332
Q ss_pred Hh----HHhHHhhhhhhhhh-C----CCCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000746 559 IP----VVVTVVSFGTFTLL-G----GDLTPARAFTS----LSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEE 625 (1303)
Q Consensus 559 ~~----~~~~~~~f~~~~~~-~----~~l~~~~~f~~----l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~ 625 (1303)
.. ..+..+..+...+. . +.++.+..+.. ..++..+..|+..+...+..+.++.++.+|+.++++.++
T Consensus 332 i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~ 411 (659)
T TIGR00954 332 VAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLD 411 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 11112222232222 2 67888765442 234566789999999999999999999999999998654
Q ss_pred hhcC-----CC-C-------------------CCCCCCCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCCh
Q 000746 626 RILM-----PN-P-------------------PLEPELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGK 680 (1303)
Q Consensus 626 ~~~~-----~~-~-------------------~~~~~~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGK 680 (1303)
+... +. + ......+.++++|++|.|++++++|+|+||++++||+++|+|||||||
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGK 491 (659)
T TIGR00954 412 DVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGK 491 (659)
T ss_pred HHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCH
Confidence 3210 00 0 000122459999999999755579999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCceEEE--cCeEEEEccCcccccccHHHHHccCC--------CCChhhHHHHHHHHhhHHHhhcC
Q 000746 681 TSLVSAMLGELPPLKDASVVI--RGTVAYVPQISWIFNATLRKNILFGS--------EFDPAKYWKTVDVSALQHDLDLL 750 (1303)
Q Consensus 681 STLl~~llg~~~~~~g~~~~~--~~~iayv~Q~p~l~~~TireNI~~g~--------~~~~~~~~~vl~~~~l~~~i~~l 750 (1303)
|||+++|+|+++|.+|. +.. +.+++||||+|+++++|++|||.++. +.++++.+++++.+++++.++.
T Consensus 492 STLl~lL~Gl~~~~~G~-i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~- 569 (659)
T TIGR00954 492 SSLFRILGELWPVYGGR-LTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER- 569 (659)
T ss_pred HHHHHHHhCCCCCCCCe-EeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh-
Confidence 99999999999998774 433 46799999999999999999999874 2456788899999999988877
Q ss_pred CCCCCccccCCCCCCchHHHHHHHHHHHHHHH-------------------HHhHhc--CCCEEEEEecCCCcccccCEE
Q 000746 751 PDRDLTEIGERGVNISGGQKQRVSMARAVFNS-------------------CIKEEL--RGKTRILVTNQLHFLPHVDRI 809 (1303)
Q Consensus 751 p~g~~T~ige~G~~LSGGQkQRiaLARAl~~~-------------------~i~~~~--~~~TvilvtH~~~~l~~aD~i 809 (1303)
|.|++|..+ .+.+||||||||++||||++.+ .+.+.+ .++|+|+||||++.++.||++
T Consensus 570 ~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~~~~d~i 648 (659)
T TIGR00954 570 EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLWKYHEYL 648 (659)
T ss_pred cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHHHhCCEE
Confidence 999999876 5679999999999999996531 122222 379999999999999999999
Q ss_pred EEEeC
Q 000746 810 ILVSE 814 (1303)
Q Consensus 810 i~l~~ 814 (1303)
++|++
T Consensus 649 l~l~~ 653 (659)
T TIGR00954 649 LYMDG 653 (659)
T ss_pred EEEeC
Confidence 99963
No 47
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-44 Score=427.20 Aligned_cols=374 Identities=20% Similarity=0.262 Sum_probs=297.8
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHhhhcccccC-CCC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 922 IMILFACYLSTEVLRISSSTWLSFWTDQSTS-KNY--NPGFYIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSML 998 (1303)
Q Consensus 922 ~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~-~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~ 998 (1303)
+...+.+.++.....+..|..++..+|.... ... .......+..++.++..++.+++.+++.+.+.++..++|.++|
T Consensus 149 l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv~~rlR~~lF 228 (716)
T KOG0058|consen 149 LVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLLQYAGERVVARLRTDLF 228 (716)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455556677778777666654322 111 1112233455566677788889999999999999999999999
Q ss_pred HHHHcCcccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 999 NSILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYY 1078 (1303)
Q Consensus 999 ~~ll~~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~~~~pl~~~~~~i~~~~ 1078 (1303)
++++++.++|||+|.+|+|+||++.|.+.+.+.++..+...+.+.++.++.+.+|++.+|.+..+.+..+++...+.++|
T Consensus 229 ~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv~~i~~P~v~~~~~~y 308 (716)
T KOG0058|consen 229 RSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVTLIVVPIVALVAKIY 308 (716)
T ss_pred HHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988888877777777888899
Q ss_pred HHHHHHHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1079 QSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMIWL 1158 (1303)
Q Consensus 1079 ~~~~r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~ 1158 (1303)
.+..|++.+..+++.+..+....|.+++++|||+|+.|+++.++|.+.+++..+...........+.-..++.+.+..+.
T Consensus 309 G~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~~~~~~~~~~~~s 388 (716)
T KOG0058|consen 309 GKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFGSTNLLGNLAVLS 388 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHhHHHHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999988887766555443332222222233333333222
Q ss_pred HHHHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCC
Q 000746 1159 IATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWP 1238 (1303)
Q Consensus 1159 ~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp 1238 (1303)
+..++ ...+..+.+..|.+..++.|...+...+.++...++++.++.+|.+|++|++|.+|..+.. +.. .|. .
T Consensus 389 iL~~G---g~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~--G~~-~p~-~ 461 (716)
T KOG0058|consen 389 ILFYG---GHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLT--GTL-APD-H 461 (716)
T ss_pred HHHhc---cchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCC--Ccc-ccc-c
Confidence 22221 1122233456788999999999999999999999999999999999999999987665432 221 222 5
Q ss_pred CcceEEEEEEEEEeCCC-CCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1239 SSGSIKFEDVVLRYRPE-LPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1239 ~~G~I~f~nVsf~Y~~~-~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
.+|.|||+||+|+|+.. ..|||||+||+|+|||+||+||||||||||+++||+|||||++|+|+
T Consensus 462 ~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~Il 526 (716)
T KOG0058|consen 462 LQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRIL 526 (716)
T ss_pred ccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEE
Confidence 78999999999999543 23799999999999999999999999999999999999999999996
No 48
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=5.3e-38 Score=388.64 Aligned_cols=369 Identities=20% Similarity=0.283 Sum_probs=296.3
Q ss_pred HHHHHHHHHHHHHhhhhHHHhhhcccccCCCC-CchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 924 ILFACYLSTEVLRISSSTWLSFWTDQSTSKNY-NPGFYI-AIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSI 1001 (1303)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~-~~~~~~-~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l 1001 (1303)
-+++..++.+++.+..|+..+..+|....... ....++ ..+++.++...++.+++.+++.+.+.+...++-.++++|+
T Consensus 158 ~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~hl 237 (709)
T COG2274 158 EVLLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHL 237 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34444555667888889888888887543322 222333 3444556677888999999999999999999999999999
Q ss_pred HcCcccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1002 LRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQST 1081 (1303)
Q Consensus 1002 l~~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~~~~pl~~~~~~i~~~~~~~ 1081 (1303)
+++|++||++.++|++++|+ +|++.|.+++.......+..++..+..+++|.+.++.++++.+..++++..+..+..+.
T Consensus 238 l~Lpl~~f~~r~~Ge~~sR~-~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~ 316 (709)
T COG2274 238 LRLPLSYFEKRSVGEIISRV-RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPL 316 (709)
T ss_pred HcCcHHHccCCChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998 78999999999887777777777777777888888887777766666666665566666
Q ss_pred HHHHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 000746 1082 AREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMIWLI-- 1159 (1303)
Q Consensus 1082 ~r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~-- 1159 (1303)
.|+..+...+..+..+++..|++.|+.|||+.+.|+++..+.++..++..+..+.......+......++..+..+.+
T Consensus 317 l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~ 396 (709)
T COG2274 317 LRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILW 396 (709)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666778899999999999999999999999999998888888777776666666666555444333322
Q ss_pred -HHHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCC
Q 000746 1160 -ATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWP 1238 (1303)
Q Consensus 1160 -~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp 1238 (1303)
+...+..+ ..+.|.+..+.+....+++++..++..+++++....+.+|+.++++.|+|.+.. ..+...|+
T Consensus 397 ~G~~lVl~~------~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~---~~~~~~~~ 467 (709)
T COG2274 397 FGAILVLEG------ELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGD---KTLIHLPK 467 (709)
T ss_pred HHHHHHhcC------CcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc---cccccccc
Confidence 22333322 234677778888888999999999999999999999999999999999886431 11345567
Q ss_pred CcceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1239 SSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1239 ~~G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
.+|+|+|+||+|+|+++.+++|+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|+
T Consensus 468 ~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~ 531 (709)
T COG2274 468 LQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRIL 531 (709)
T ss_pred cCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 8899999999999998888899999999999999999999999999999999999999999996
No 49
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=1.1e-36 Score=379.21 Aligned_cols=371 Identities=16% Similarity=0.149 Sum_probs=269.1
Q ss_pred HHHHHHHHHHhhhhHHHhhhcccccCCCCCchHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 000746 927 ACYLSTEVLRISSSTWLSFWTDQSTSKNYNPGFYIAI--YTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRA 1004 (1303)
Q Consensus 927 ~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~i--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~ 1004 (1303)
++.++..++.+..++.+++.+|...........+..+ ++++.++..++.++..++....+.++..++|.++|+|++++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~ 99 (529)
T TIGR02868 20 LLGALALGSAVALLGVSAWLISRAAEMPPVLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAALRSLGRLRVRVYDRLARL 99 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3344455566666777776666432211111111111 11233445666777888888899999999999999999999
Q ss_pred cccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 000746 1005 PMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAA-YLYYQSTAR 1083 (1303)
Q Consensus 1005 p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~~~~pl~~~~~~i-~~~~~~~~r 1083 (1303)
|.+||+++++|++++|+++|++.+++.+...+..++..++.+++.++++++.+|.+.++++..++++.++ ..++.+..+
T Consensus 100 ~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~ 179 (529)
T TIGR02868 100 ALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLLLAGFVAPLVSLRAAR 179 (529)
T ss_pred CccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999988887777777777777777778888887766655443333333 334444445
Q ss_pred HHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1084 EVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMIWLIATFA 1163 (1303)
Q Consensus 1084 ~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~ 1163 (1303)
+..+...+..+.+.+++.|+++|+++||+|+.|+++.+++.+..++..+..........+......++..+..+++..++
T Consensus 180 ~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 259 (529)
T TIGR02868 180 AAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQLLAAGLAVLGALWAG 259 (529)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555556678899999999999999999999999999998888877776665554444444444443333222222222
Q ss_pred HHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceE
Q 000746 1164 VMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSI 1243 (1303)
Q Consensus 1164 v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~G~I 1243 (1303)
.+.. ..+....|.+..++.++..+..++..+...+..++....+.+|+.++++.++|.+... ...+...+|..++|
T Consensus 260 ~~~~---~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~~~~~~~~~~~I 335 (529)
T TIGR02868 260 GPAV---ADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGV-VPAAGALGLGKPTL 335 (529)
T ss_pred HHHH---hCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCC-CCCCcccCCCCceE
Confidence 1110 0112345777778888888999999999999999999999999999998766533211 11111123456789
Q ss_pred EEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1244 KFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1244 ~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|+
T Consensus 336 ~~~~vsf~Y~~~-~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~ 393 (529)
T TIGR02868 336 ELRDLSFGYPGS-PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVT 393 (529)
T ss_pred EEEEEEEecCCC-CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 999999999754 4699999999999999999999999999999999999999999985
No 50
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=1.9e-36 Score=386.81 Aligned_cols=369 Identities=20% Similarity=0.254 Sum_probs=281.1
Q ss_pred HHHHHHHHHHHHHhhhhHHHhhhcccccCCCCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 924 ILFACYLSTEVLRISSSTWLSFWTDQSTSKNYNP--GFYIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSI 1001 (1303)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l 1001 (1303)
..+++.++...+.+..|++.+..+|......... ...+.+++++.++..++.+++.+...+.+.+...++|+++|+++
T Consensus 165 ~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~~~l 244 (711)
T TIGR00958 165 SAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSL 244 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566777778888887777543211111 11233344455556667778888888999999999999999999
Q ss_pred HcCcccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1002 LRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQST 1081 (1303)
Q Consensus 1002 l~~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~~~~pl~~~~~~i~~~~~~~ 1081 (1303)
+++|++||+++++|+++||+++|++.+++.+...+..++..++.+++.+++++..+|.+.++++...++..++..++.+.
T Consensus 245 l~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~~~~~~~~~~~ 324 (711)
T TIGR00958 245 LRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKR 324 (711)
T ss_pred HcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888888888888888888888888887766665555555666677777
Q ss_pred HHHHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 000746 1082 AREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSS---NRWLTIRLETLGGIMIWL 1158 (1303)
Q Consensus 1082 ~r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~---~~wl~~~l~~~~~~~~~~ 1158 (1303)
.++..+...+..+..++++.|+++|+++||+|+.|+++.+++.+..++..+........ ..|....+..+..++++.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 404 (711)
T TIGR00958 325 YQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLY 404 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777788899999999999999999999999999888887766554433222 223222222222222222
Q ss_pred HHHHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCC
Q 000746 1159 IATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWP 1238 (1303)
Q Consensus 1159 ~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp 1238 (1303)
.+.+.+.. +....|.+..++.|...+..++..+...+.+++++..+.+|+.++++.+++.+.. .. ...++
T Consensus 405 ~g~~lv~~------g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~--~~--~~~~~ 474 (711)
T TIGR00958 405 YGGQLVLT------GKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLT--GT--LAPLN 474 (711)
T ss_pred HHHHHHHc------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC--CC--CCCCC
Confidence 33222221 1234677888888999999999999999999999999999999999876654321 11 11234
Q ss_pred CcceEEEEEEEEEeCCC-CCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1239 SSGSIKFEDVVLRYRPE-LPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1239 ~~G~I~f~nVsf~Y~~~-~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
.+|+|+|+||+|+|+++ .+++|+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|+
T Consensus 475 ~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~ 539 (711)
T TIGR00958 475 LEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVL 539 (711)
T ss_pred CCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEE
Confidence 57899999999999743 35799999999999999999999999999999999999999999985
No 51
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=2.6e-35 Score=378.34 Aligned_cols=367 Identities=16% Similarity=0.213 Sum_probs=274.2
Q ss_pred HHHHHHHHHHHHhhhhHHHhhhcccccCCCCC-c-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 925 LFACYLSTEVLRISSSTWLSFWTDQSTSKNYN-P-GFYIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSIL 1002 (1303)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~-~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll 1002 (1303)
.+++.++..++.+..|++++.+.|........ . ..+.++++++.++..++.+++.++..+.+.+...++|.++++|++
T Consensus 161 ~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll 240 (708)
T TIGR01193 161 IVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLF 240 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555667777888888888764322211 1 112223334445566777888888999999999999999999999
Q ss_pred cCcccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1003 RAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQSTA 1082 (1303)
Q Consensus 1003 ~~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~~~~pl~~~~~~i~~~~~~~~ 1082 (1303)
++|++||+++++|++++|++ |.+.+.+.+.......+..++.++..++++++.+|.++++++..++++.++..++.+..
T Consensus 241 ~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~ 319 (708)
T TIGR01193 241 ELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTF 319 (708)
T ss_pred cCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998 88888887766665656666666666666777777766665555555555566667777
Q ss_pred HHHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q 000746 1083 REVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLET---LGGIMIWLI 1159 (1303)
Q Consensus 1083 r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~---~~~~~~~~~ 1159 (1303)
++..+...+..+...+.+.|+++|+++||+|+.|+++.+++.+..++..+..+.......+......+ +..++++++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~~ 399 (708)
T TIGR01193 320 NKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVILWT 399 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777778889999999999999999999999999888877776665555443333333322222 222333333
Q ss_pred HHHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCC
Q 000746 1160 ATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPS 1239 (1303)
Q Consensus 1160 ~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~ 1239 (1303)
+.+.+.. +..+.|.+..+..+...+..++..+...+.+++....+++|+.++++.|+|.+... ...+.++.
T Consensus 400 g~~lv~~------g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~---~~~~~~~~ 470 (708)
T TIGR01193 400 GAYLVMR------GKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKK---KRTELNNL 470 (708)
T ss_pred HHHHHHc------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc---cccCCCCC
Confidence 3333322 12346777788888889999999999999999999999999999998877653211 11123445
Q ss_pred cceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1240 SGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1240 ~G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
.|+|+|+||+|+|+++ +++|+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|+
T Consensus 471 ~~~I~~~~vsf~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~ 532 (708)
T TIGR01193 471 NGDIVINDVSYSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEIL 532 (708)
T ss_pred CCcEEEEEEEEEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEE
Confidence 7899999999999644 5799999999999999999999999999999999999999999986
No 52
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=6.5e-35 Score=364.74 Aligned_cols=371 Identities=17% Similarity=0.173 Sum_probs=268.8
Q ss_pred HHHHHHHHHHHHHhhhhHHHhhhccccc-CCCC---CchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 924 ILFACYLSTEVLRISSSTWLSFWTDQST-SKNY---NPGF--YIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSM 997 (1303)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~l~~w~~~~~-~~~~---~~~~--~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l 997 (1303)
+.+++.++..++.+..++.+++.+|... .... .... ....+.+++++..++.++..++....+.++..++|.++
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l 99 (574)
T PRK11160 20 LGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSHDATFRVLTHLRVFT 99 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555666666766666665321 1110 0111 12233344556667788888888999999999999999
Q ss_pred HHHHHcCcccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 000746 998 LNSILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILF-YAAYL 1076 (1303)
Q Consensus 998 ~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~~~~pl~~~~-~~i~~ 1076 (1303)
|+|++++|++||++.++|++++|+++|++.+++.+...+..++..++..++.++++++.+|.+.++++..+++. .++..
T Consensus 100 ~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~ 179 (574)
T PRK11160 100 FSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTLGGILLLLLLLLPL 179 (574)
T ss_pred HHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888888888888888888888888887766554333322 22334
Q ss_pred HHHHHHHHHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1077 YYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMI 1156 (1303)
Q Consensus 1077 ~~~~~~r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~ 1156 (1303)
++.+..++..+...+..+.+.+.+.|+++|+++||+|+.|+++.+++.+..++..+..........+.....+++..+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (574)
T PRK11160 180 LFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLSQALMILANGLTV 259 (574)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566666667777889999999999999999999999999999998888877776666555555555555444433
Q ss_pred HHHHHHHHHccCcccccccchhHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCC
Q 000746 1157 WLIATFAVMQNGRAENQVAFASTMGLLLSYT-LNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPP 1235 (1303)
Q Consensus 1157 ~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~-~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~ 1235 (1303)
.++..++.... .+....|.+..++.|+ .....++..+...+..++....+.+|+.++++.++|.+.. + ..++
T Consensus 260 ~~i~~~g~~~~----~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~-~-~~~~- 332 (574)
T PRK11160 260 VLMLWLAAGGV----GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFP-T-TSTA- 332 (574)
T ss_pred HHHHHHHHHHh----ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC-c-ccCC-
Confidence 32222222210 0112234444444443 3334566777777888899999999999999877653211 1 1111
Q ss_pred CCCCcceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1236 AWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1236 ~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
.+..|+|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|+
T Consensus 333 -~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~ 398 (574)
T PRK11160 333 -AADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEIL 398 (574)
T ss_pred -CCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 134578999999999976545799999999999999999999999999999999999999999985
No 53
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=5.9e-35 Score=373.83 Aligned_cols=367 Identities=18% Similarity=0.149 Sum_probs=275.6
Q ss_pred HHHHHHHHHHHHHhhhhHHHhhhcccccCCCC-Cc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 924 ILFACYLSTEVLRISSSTWLSFWTDQSTSKNY-NP-GFYIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSI 1001 (1303)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~-~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l 1001 (1303)
..+++.++...+.+..|+.++...|....... .. ..+.+.++++.++..++.+++.+.....+.+...++|.++++|+
T Consensus 140 ~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 219 (686)
T TIGR03797 140 AILAMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRL 219 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455566777778877777765432111 11 12233444455566777888888999999999999999999999
Q ss_pred HcCcccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1002 LRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQST 1081 (1303)
Q Consensus 1002 l~~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~~~~pl~~~~~~i~~~~~~~ 1081 (1303)
+++|++||++.++|++++|++ |++.+++.+...+...+...+..++.+++++..+|.+.++++.++++++++..++.+.
T Consensus 220 l~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~ 298 (686)
T TIGR03797 220 LRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLL 298 (686)
T ss_pred HcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999997 7899988887766666656655666666777777777666655555555555555555
Q ss_pred HHHHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Q 000746 1082 AREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMIW---L 1158 (1303)
Q Consensus 1082 ~r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~---~ 1158 (1303)
.++..+...+..+...+++.|+++|+.+||+|+.|+++.+++.+..+...+..+.....+.|.......+..+... +
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~ 378 (686)
T TIGR03797 299 QVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFA 378 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555556667889999999999999999999999999998888887777776666666665554444333222 2
Q ss_pred HHHHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCC
Q 000746 1159 IATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWP 1238 (1303)
Q Consensus 1159 ~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp 1238 (1303)
++.+.+.. +....|.+..+..+...+..++..+...+.+++....+.+|+.++++.|+|.+. +... ..+
T Consensus 379 ~g~~lv~~------g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~---~~~~--~~~ 447 (686)
T TIGR03797 379 AAISLLGG------AGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDE---AKTD--PGK 447 (686)
T ss_pred HHHHHHHc------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc---CcCC--CCC
Confidence 22222221 123467777778888889999999999999999999999999999987765432 1111 123
Q ss_pred CcceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1239 SSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1239 ~~G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
..|+|+|+||+|+|+++.+++|+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|+
T Consensus 448 ~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~ 511 (686)
T TIGR03797 448 LSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVF 511 (686)
T ss_pred CCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEE
Confidence 4689999999999976667899999999999999999999999999999999999999999985
No 54
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=5.9e-35 Score=375.56 Aligned_cols=370 Identities=14% Similarity=0.153 Sum_probs=278.6
Q ss_pred HHHHHHHHHHHhhhhHHHhhhcccccCCCCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000746 926 FACYLSTEVLRISSSTWLSFWTDQSTSKNYNP--GFYIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILR 1003 (1303)
Q Consensus 926 ~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~ 1003 (1303)
+++.++..++.+..|+.++...|......... ..+.++++++.++..++.+++.++....+.+...+++.++|+|+++
T Consensus 160 ~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~ 239 (710)
T TIGR03796 160 LLAGLLLVLPGLVIPAFSQIFVDEILVQGRQDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILR 239 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33344455666777888877776532221111 1223344444556677788888999999999999999999999999
Q ss_pred CcccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1004 APMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQSTAR 1083 (1303)
Q Consensus 1004 ~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~~~~pl~~~~~~i~~~~~~~~r 1083 (1303)
+|++||++.++|++++|++.| +.+.+.+...+...+..++.+++.+++++..+|.+.++++.+++++.++..++.+..+
T Consensus 240 l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~ 318 (710)
T TIGR03796 240 LPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRV 318 (710)
T ss_pred CCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988 6788877777777777777777777778888887777666666666666666666666
Q ss_pred HHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Q 000746 1084 EVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMIW---LIA 1160 (1303)
Q Consensus 1084 ~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~---~~~ 1160 (1303)
+..+...+..+...+.+.|+++|+++||+++.|+.+.+++.+..++..+..........+.......+..+... +.+
T Consensus 319 ~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g 398 (710)
T TIGR03796 319 DANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVG 398 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666777889999999999999999999999999988877776666655555555555444443333222 222
Q ss_pred HHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCC--C-CCCCCC
Q 000746 1161 TFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVES--N-RPPPAW 1237 (1303)
Q Consensus 1161 ~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~--~-~~~~~w 1237 (1303)
.+.+.. +....|.+..++.+...+..++..+...+.+++....+.+|+.++++.|+|.+..... . ...+.+
T Consensus 399 ~~~v~~------g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~ 472 (710)
T TIGR03796 399 GLRVME------GQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSP 472 (710)
T ss_pred HHHHHc------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCC
Confidence 222221 1234677778888888999999999999999999999999999999887664321100 0 011113
Q ss_pred CCcceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1238 PSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1238 p~~G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
+.+|.|+|+||+|+|+++.+++|+|+||+|+|||+|||||+||||||||+++|+|+|+|++|+|+
T Consensus 473 ~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~ 537 (710)
T TIGR03796 473 RLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEIL 537 (710)
T ss_pred CCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 45689999999999987667899999999999999999999999999999999999999999985
No 55
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=6.6e-35 Score=363.09 Aligned_cols=366 Identities=18% Similarity=0.170 Sum_probs=269.8
Q ss_pred HHHHHHHHHHHhhhhHHHhhhccccc-CCCC-C-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 926 FACYLSTEVLRISSSTWLSFWTDQST-SKNY-N-PGFYIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSIL 1002 (1303)
Q Consensus 926 ~~~~~~~~~~~~~~~~~l~~w~~~~~-~~~~-~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll 1002 (1303)
+++.++...+.+..++.+++..|... .... . ...+.++++++.++..++.++..+...+.+.+...++|.++|++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~ 88 (529)
T TIGR02857 9 GLLGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAVA 88 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666667777777666442 1111 1 1223444555566677788888898999999999999999999999
Q ss_pred cCcccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1003 RAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQSTA 1082 (1303)
Q Consensus 1003 ~~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~~~~pl~~~~~~i~~~~~~~~ 1082 (1303)
+.|.+||++.++|++++|+++|++.+++.+...+..++..++..+..+++++..+|.++++++...++..++..++.+..
T Consensus 89 ~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~~ 168 (529)
T TIGR02857 89 ALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILIGWAA 168 (529)
T ss_pred hCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988877777777777777777777777777666555444444333334445555
Q ss_pred HHHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 000746 1083 REVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMIWLI--- 1159 (1303)
Q Consensus 1083 r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~--- 1159 (1303)
++..+...+..+...+.+.|+++|+++||+|+.|+++.+++.+..++..+..........+......++..+..++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (529)
T TIGR02857 169 QAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAVY 248 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555666788899999999999999999999999999888777766655554444455444444433322221
Q ss_pred HHHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCC
Q 000746 1160 ATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPS 1239 (1303)
Q Consensus 1160 ~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~ 1239 (1303)
+.+.+. .+ ....|.+..++.++..+..++..+...+..++....+.+|+.++++.+++... .. + ...+.
T Consensus 249 ~~~~~~-~g-----~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~---~~-~-~~~~~ 317 (529)
T TIGR02857 249 IGFRLL-AG-----DLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG---KA-P-VTAAP 317 (529)
T ss_pred HHHHHH-cC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC---Cc-C-CCCCC
Confidence 111122 11 23456677778888889999999999999999999999999999985543221 11 1 11223
Q ss_pred cceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1240 SGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1240 ~G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
.|+|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|+
T Consensus 318 ~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~ 380 (529)
T TIGR02857 318 APSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIA 380 (529)
T ss_pred CCeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 468999999999976545899999999999999999999999999999999999999999985
No 56
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=6e-35 Score=365.94 Aligned_cols=369 Identities=21% Similarity=0.281 Sum_probs=273.6
Q ss_pred HHHHHHHHHHHHhhhhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 000746 925 LFACYLSTEVLRISSSTWLSFWTDQSTSKNYNPGFYIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRA 1004 (1303)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~ 1004 (1303)
.+++.++...+....++++....|...........+...++++.++..++.++..+...+.+.+...++|.+++++++++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~ 98 (567)
T COG1132 19 AILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRL 98 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33344445566667777777666543311111222333444444555666777778888888999999999999999999
Q ss_pred cccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1005 PMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQSTARE 1084 (1303)
Q Consensus 1005 p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~~~~pl~~~~~~i~~~~~~~~r~ 1084 (1303)
|++||+++++|++++|+++|++.++..+......+...++.+++.+++++..+|.+.++++...+++.+...++.++.++
T Consensus 99 ~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~ 178 (567)
T COG1132 99 PLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRK 178 (567)
T ss_pred CHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888775555556667777777888888877766666555555555666666688
Q ss_pred HHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1085 VKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMIWLIATFAV 1164 (1303)
Q Consensus 1085 l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v 1164 (1303)
..+...+..+.+++.+.|+++|+++||+|+.++...+++.+..+...+.................++..+....+..++.
T Consensus 179 ~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (567)
T COG1132 179 LSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGG 258 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888899999999999999999999999988777777666655554433333333333333333322222222221
Q ss_pred HccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEE
Q 000746 1165 MQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIK 1244 (1303)
Q Consensus 1165 ~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~G~I~ 1244 (1303)
... .......|.+..++.+...+..++..+......++....+.||+.++++.+++..+.. .+ .++..|+|+
T Consensus 259 ~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~---~~--~~~~~~~I~ 330 (567)
T COG1132 259 FLV---LSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPP---DP--LKDTIGSIE 330 (567)
T ss_pred HHH---HcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCC---CC--CCCCCCeEE
Confidence 110 0111346788889999999999999999999999999999999999999865532211 11 345678999
Q ss_pred EEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1245 FEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1245 f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+||+|+|+++ +++|+|+||+|+|||++|||||||||||||+++|+|||||++|+|+
T Consensus 331 f~~vsf~y~~~-~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~ 387 (567)
T COG1132 331 FENVSFSYPGK-KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEIL 387 (567)
T ss_pred EEEEEEEcCCC-CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEE
Confidence 99999999753 5799999999999999999999999999999999999999999986
No 57
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.1e-34 Score=365.71 Aligned_cols=374 Identities=14% Similarity=0.131 Sum_probs=266.7
Q ss_pred HHHHHHHHHHHHHhhhhHHHhhhccccc--CCCCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 924 ILFACYLSTEVLRISSSTWLSFWTDQST--SKNYN-PGFYIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNS 1000 (1303)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~l~~w~~~~~--~~~~~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ 1000 (1303)
+.+++.++...+.+..++.++...|... ..... ...+..+++++.++..++.+++.++....+.+...++|.++|+|
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ 105 (588)
T PRK11174 26 LSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGFKAGQHIRQQIRQQVLDK 105 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555666677777776666421 11111 12233344445556667778888888999999999999999999
Q ss_pred HHcCcccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1001 ILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQS 1080 (1303)
Q Consensus 1001 ll~~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~~~~pl~~~~~~i~~~~~~ 1080 (1303)
++++|++||+++++|++++|+++|++.+++.+...+..++..++..++.+++++..+|.+.++++..+++..++..++.+
T Consensus 106 ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~ 185 (588)
T PRK11174 106 LQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLILLGTAPLIPLFMALVGM 185 (588)
T ss_pred HHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988877778777777777777777888887766555555555555556666
Q ss_pred HHHHHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1081 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMIWLIA 1160 (1303)
Q Consensus 1081 ~~r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~ 1160 (1303)
..++..+...+..+.+.+.+.|.++|+++||+|++|+++.+++.+..++..+..........+......++..+.+++++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (588)
T PRK11174 186 GAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLSSAVLEFFASISIALVA 265 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666667778899999999999999999999999999998888777666554444333333333333322221111
Q ss_pred HH---HHHccCccccc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCC
Q 000746 1161 TF---AVMQNGRAENQ--VAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPP 1235 (1303)
Q Consensus 1161 ~~---~v~~~~~~~~~--~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~ 1235 (1303)
.+ ...+..+.+.. .........++.++..+..++..+...+..++.+..+.+|+.++++.|++.+. +...+.
T Consensus 266 ~~~~~~~~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~--~~~~~~- 342 (588)
T PRK11174 266 VYFGFSYLGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFLETPLAHPQ--QGEKEL- 342 (588)
T ss_pred HHHHHHHhcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccC--CCcccc-
Confidence 11 11111111110 00111222333556677889999999999999999999999999987654321 111111
Q ss_pred CCCCcceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1236 AWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1236 ~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
..+..++|+|+||+|.|.++ ++||+|+||+|+|||++||||+||||||||+++|+|+| |++|+|+
T Consensus 343 ~~~~~~~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~ 407 (588)
T PRK11174 343 ASNDPVTIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLK 407 (588)
T ss_pred CCCCCceEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEE
Confidence 11234689999999988654 57999999999999999999999999999999999999 9999985
No 58
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=1.3e-34 Score=371.22 Aligned_cols=366 Identities=19% Similarity=0.237 Sum_probs=273.7
Q ss_pred HHHHHHHHHHHhhhhHHHhhhcccccCCCC-Cch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000746 926 FACYLSTEVLRISSSTWLSFWTDQSTSKNY-NPG-FYIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILR 1003 (1303)
Q Consensus 926 ~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~-~~~-~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~ 1003 (1303)
+++.++..++.+..|+.++...|....... ... .+..+++++.++..++.+++.++..+.+.++..++|.++|+|+++
T Consensus 153 ~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~ 232 (694)
T TIGR03375 153 LIASLLINLLALASPLFVMNVYDRVVPNQAFETLWVLAIGVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVLG 232 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334445556677778888777775432111 111 122233334445667788888999999999999999999999999
Q ss_pred CcccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1004 APMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQSTAR 1083 (1303)
Q Consensus 1004 ~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~~~~pl~~~~~~i~~~~~~~~r 1083 (1303)
+|++| ++.++|++++|+ +|++.+++.+...+...+..++.++..++++++.++.+.++.+..++++.++..++.+..+
T Consensus 233 l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~ 310 (694)
T TIGR03375 233 LRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLS 310 (694)
T ss_pred CCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998 788999999999 7999999988776666666666666666677777777766655555555555556666666
Q ss_pred HHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q 000746 1084 EVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGI---MIWLIA 1160 (1303)
Q Consensus 1084 ~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~---~~~~~~ 1160 (1303)
+..+...+..+...+.+.|+++|+++||+|+.|+.+.+++.+..++..+........+.+.....+++..+ ++++.+
T Consensus 311 ~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g 390 (694)
T TIGR03375 311 RLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVG 390 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666677778899999999999999999999999999998888777666665554444444443333222 222222
Q ss_pred HHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCc
Q 000746 1161 TFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSS 1240 (1303)
Q Consensus 1161 ~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~ 1240 (1303)
.+.+.. +....|.+..++.+...+..++..+...+.+++....+.+|+.++++.++|.+.. . ......+..
T Consensus 391 ~~~v~~------g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~--~-~~~~~~~~~ 461 (694)
T TIGR03375 391 VYLISD------GELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEG--T-RFLHRPRLQ 461 (694)
T ss_pred HHHHHc------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC--C-CCCCCCCcc
Confidence 222222 1234677778888889999999999999999999999999999999987664321 1 111112346
Q ss_pred ceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1241 GSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1241 G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+|+|+||+|+|+++.+++|+|+||+|+|||+|||||+||||||||+++|+|+|+|++|+|+
T Consensus 462 ~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~ 523 (694)
T TIGR03375 462 GEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVL 523 (694)
T ss_pred ceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 89999999999976556899999999999999999999999999999999999999999985
No 59
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=6e-34 Score=359.06 Aligned_cols=367 Identities=19% Similarity=0.273 Sum_probs=264.4
Q ss_pred HHHHHHHHHHHHhhhhHHHhhhcccccCC-CCCchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 925 LFACYLSTEVLRISSSTWLSFWTDQSTSK-NYNPGF---YIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNS 1000 (1303)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~l~~w~~~~~~~-~~~~~~---~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ 1000 (1303)
.+++.++...+.+..+++++...|..... ...... +.++++++.++..++.++..+.....+.+...++|.+++++
T Consensus 28 ~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ 107 (592)
T PRK10790 28 AVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDA 107 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566677788888777753211 111111 12223344445566677788888899999999999999999
Q ss_pred HHcCcccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1001 ILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQS 1080 (1303)
Q Consensus 1001 ll~~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~~~~pl~~~~~~i~~~~~~ 1080 (1303)
++++|.+||++.++|++++|+++|++.+++.+...+..++..++.+++.++++.+.+|.+.++++..+++..++...+.+
T Consensus 108 l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~~~~ 187 (592)
T PRK10790 108 ALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQR 187 (592)
T ss_pred HHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988888777777777777777777777776655444333333333334444
Q ss_pred HHHHHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 000746 1081 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWL-TIRLETLGGIMIWLI 1159 (1303)
Q Consensus 1081 ~~r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl-~~~l~~~~~~~~~~~ 1159 (1303)
..+...+......+..++++.|+++|+++||+|+.++++.+++.+..++..+........+.+. .....++..+....+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (592)
T PRK10790 188 YSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGL 267 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555566788999999999999999999999999888887776655544433322221 222222222221111
Q ss_pred HHHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCC
Q 000746 1160 ATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPS 1239 (1303)
Q Consensus 1160 ~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~ 1239 (1303)
..+.... ..+....|.+..++.+...+..++..+...+.++++...+.+|+.++++.+++++. .. ..++.
T Consensus 268 ~~~~~~~----~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~---~~---~~~~~ 337 (592)
T PRK10790 268 LMLFGFS----ASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYG---ND---DRPLQ 337 (592)
T ss_pred HHHHHHH----HCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCC---CC---ccCCC
Confidence 1111110 11223467778888889999999999999999999999999999999987644321 11 11234
Q ss_pred cceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1240 SGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1240 ~G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
.|+|+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|+
T Consensus 338 ~~~i~~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~ 399 (592)
T PRK10790 338 SGRIDIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIR 399 (592)
T ss_pred CCeEEEEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEE
Confidence 5789999999999754 5799999999999999999999999999999999999999999985
No 60
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=5.2e-34 Score=365.21 Aligned_cols=364 Identities=16% Similarity=0.227 Sum_probs=272.1
Q ss_pred HHHHHHHHHhhhhHHHhhhcccccCCC-CCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Q 000746 928 CYLSTEVLRISSSTWLSFWTDQSTSKN-YNP-GFYIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAP 1005 (1303)
Q Consensus 928 ~~~~~~~~~~~~~~~l~~w~~~~~~~~-~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p 1005 (1303)
+.++...+.+..|+.++...|...... ... ..+.++++++.++..++.+++.+.....+.+...++|.++|+|++++|
T Consensus 147 ~s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~ 226 (694)
T TIGR01846 147 ISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLP 226 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 334445566677777777777543211 111 222334445555667778888999999999999999999999999999
Q ss_pred ccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1006 MLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQSTAREV 1085 (1303)
Q Consensus 1006 ~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~~~~pl~~~~~~i~~~~~~~~r~l 1085 (1303)
++||++.++|++++|+ +|++.+++.+...+...+..++.++..++++++.+|.+.++++..++++.++..+..+..++.
T Consensus 227 ~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~ 305 (694)
T TIGR01846 227 LGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKR 305 (694)
T ss_pred HHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 699999988876666655555555555667777788776665555555555544555554555
Q ss_pred HHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Q 000746 1086 KRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMIW---LIATF 1162 (1303)
Q Consensus 1086 ~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~---~~~~~ 1162 (1303)
.+...+..+...+++.|+++|+++||+|+.|+++.+++.+..++..+........+.+.....+++..+... +.+.+
T Consensus 306 ~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~ 385 (694)
T TIGR01846 306 VEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAH 385 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 555555667888999999999999999999999999999888877777666655555555555444333222 22222
Q ss_pred HHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcce
Q 000746 1163 AVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGS 1242 (1303)
Q Consensus 1163 ~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~G~ 1242 (1303)
.+.. +....|.+..+..+...+..++..+...+.+++....+.+|+.++++.|+|.+.. ... ......|.
T Consensus 386 lv~~------g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~--~~~--~~~~~~~~ 455 (694)
T TIGR01846 386 LVIG------GALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA--GLA--ALPELRGA 455 (694)
T ss_pred HHHc------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC--CCC--CCCCCCCe
Confidence 2221 1234677777888888999999999999999999999999999999887664321 111 11123588
Q ss_pred EEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|+
T Consensus 456 i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~ 515 (694)
T TIGR01846 456 ITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVL 515 (694)
T ss_pred EEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 999999999986666799999999999999999999999999999999999999999985
No 61
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=6.2e-34 Score=358.78 Aligned_cols=367 Identities=15% Similarity=0.201 Sum_probs=276.4
Q ss_pred HHHHHHHHHhhhhHHHhhhcccccCCCCC-chHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Q 000746 928 CYLSTEVLRISSSTWLSFWTDQSTSKNYN-PGFY-IAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAP 1005 (1303)
Q Consensus 928 ~~~~~~~~~~~~~~~l~~w~~~~~~~~~~-~~~~-~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p 1005 (1303)
+.++........+++++...|........ ...+ ...++++.++..++.++..++..+.+.+...++|.++++++++.|
T Consensus 33 ~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~ 112 (582)
T PRK11176 33 ALILNAASDTFMLSLLKPLLDDGFGKADRSVLKWMPLVVIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMP 112 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33344444455666666666543221111 1112 222333455566677777788888999999999999999999999
Q ss_pred ccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1006 MLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQSTAREV 1085 (1303)
Q Consensus 1006 ~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~~~~pl~~~~~~i~~~~~~~~r~l 1085 (1303)
.++|++.+.|++++|+++|++.+++.+...+..++..++.+++.++++++.+|.+.++++..+++..++..+..+..++.
T Consensus 113 ~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~ 192 (582)
T PRK11176 113 VSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNI 192 (582)
T ss_pred HHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988888788888888888888888888888776666555555555555666666666
Q ss_pred HHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1086 KRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMIWLIATFAVM 1165 (1303)
Q Consensus 1086 ~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~ 1165 (1303)
.+......+...+++.|.++|+++||+|+.++++.+++.+..+...+..........+.....+++..+....+..++.+
T Consensus 193 ~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 272 (582)
T PRK11176 193 SKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASF 272 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666677888999999999999999999999999999988888877776666555665555555443333222222211
Q ss_pred ccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEE
Q 000746 1166 QNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKF 1245 (1303)
Q Consensus 1166 ~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~G~I~f 1245 (1303)
.. ..+....|.+.+++.+...+..++..+...+..++....+.+|+.++++.++|.+. +.. ...|..++|+|
T Consensus 273 ~~---~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~--~~~---~~~~~~~~i~~ 344 (582)
T PRK11176 273 PS---VMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDE--GKR---VIERAKGDIEF 344 (582)
T ss_pred HH---HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCC--CCc---CCCCCCCeEEE
Confidence 10 01123467777788888889999999999999999999999999999987655321 111 11234578999
Q ss_pred EEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1246 EDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1246 ~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|+
T Consensus 345 ~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~ 401 (582)
T PRK11176 345 RNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEIL 401 (582)
T ss_pred EEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEE
Confidence 999999976556899999999999999999999999999999999999999999985
No 62
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9e-37 Score=351.96 Aligned_cols=240 Identities=20% Similarity=0.266 Sum_probs=189.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcEEEEeeEEEeCC-CC
Q 000746 576 GDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPNPPLEPELPAVSIKNGNFSWDS-KS 654 (1303)
Q Consensus 576 ~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~f~~~~-~~ 654 (1303)
+.+++..+|+.+++++.+..++..++..... ..|+.+|+..++......+..++..+.|+++|++++|++ ..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nls~~y~~~~~ 95 (329)
T PRK14257 23 NELDAKAIYDEFQKLNKYQRAFAWLKLPKQK-------KAELKQFLNKKKTQVDLLKEDFNHANVFEIRNFNFWYMNRTK 95 (329)
T ss_pred chhHHHHHHHHhhccccccchhhHHhccccc-------chhhhhcccccccccccccCCCCcCceEEEEeeEEEecCCCc
Confidence 5678899999999999888887766654322 568888876544211111122344568999999999964 34
Q ss_pred CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCCCceE--------------EEcCeEEEEccCcccc
Q 000746 655 PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP-----PLKDASV--------------VIRGTVAYVPQISWIF 715 (1303)
Q Consensus 655 ~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~-----~~~g~~~--------------~~~~~iayv~Q~p~l~ 715 (1303)
++|+|+||+|++||+++|+|+||||||||+++|+|+++ |.+|.+. .+++.++||||+||+|
T Consensus 96 ~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~ 175 (329)
T PRK14257 96 HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPF 175 (329)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccC
Confidence 79999999999999999999999999999999999996 3566422 1356799999999999
Q ss_pred cccHHHHHccCCC---CChh-----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH-------
Q 000746 716 NATLRKNILFGSE---FDPA-----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF------- 780 (1303)
Q Consensus 716 ~~TireNI~~g~~---~~~~-----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~------- 780 (1303)
++|++|||.|+.. ++++ .+.++++.|++.++ .++.++++|.+||||||||++||||++
T Consensus 176 ~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-------l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlL 248 (329)
T PRK14257 176 EMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDE-------VKDDLDKAGNALSGGQQQRLCIARAIALEPEVLL 248 (329)
T ss_pred CCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcch-------hhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEE
Confidence 9999999998643 2222 24556666665443 357789999999999999999999954
Q ss_pred ----------------HHHHhHhcCCCEEEEEecCCCcccc-cCEEEEEeCCEEEEecCHHHHHhc
Q 000746 781 ----------------NSCIKEELRGKTRILVTNQLHFLPH-VDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 781 ----------------~~~i~~~~~~~TvilvtH~~~~l~~-aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
.+++.+..+++|+|+|||+++++.. ||+|++|++|+|++.|+++++...
T Consensus 249 LDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~ 314 (329)
T PRK14257 249 MDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIH 314 (329)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 3456666678999999999999876 999999999999999999998754
No 63
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=1.8e-33 Score=350.42 Aligned_cols=369 Identities=13% Similarity=0.040 Sum_probs=255.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000746 924 ILFACYLSTEVLRISSSTWLSFWTDQSTSKNYNPGFYIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILR 1003 (1303)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~ 1003 (1303)
+.+++.++.....+..++.++.+.+....... ..+..++++.++..++.++..++....+.+...++|.++|+|+++
T Consensus 22 l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~ 98 (555)
T TIGR01194 22 FSIALGLAGGLAIIALLASINNAIHEENFLGQ---GSLFSFGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILG 98 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33334444555666677777777654211111 112223344455566778888888999999999999999999999
Q ss_pred CcccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1004 APMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQSTAR 1083 (1303)
Q Consensus 1004 ~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~~~~pl~~~~~~i~~~~~~~~r 1083 (1303)
+|++||+++++|++++|+++|++.+++.+.. +..++..++.+++.++++++.+|.+.++++.++++..++..+..++.+
T Consensus 99 ~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~ 177 (555)
T TIGR01194 99 APIEEIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGF 177 (555)
T ss_pred CCHHHHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988754 556666666667777777788887776655555544444444444445
Q ss_pred HHHHHhhhccchHHHHHHHHhcChhhHhhcCcHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1084 EVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYD--RMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMIWLIAT 1161 (1303)
Q Consensus 1084 ~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~--~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~ 1161 (1303)
+..+..++..+.+++.+.|.+.|+++||+|+.++ ...+++.+..++..+................+++..+...+...
T Consensus 178 ~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (555)
T TIGR01194 178 KFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAENFGQLLFFLLIGCALF 257 (555)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555667889999999999999999999843 44555666555555444332222222212222222111111111
Q ss_pred HHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCC---CCCCCC--CCC
Q 000746 1162 FAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGM---VESNRP--PPA 1236 (1303)
Q Consensus 1162 ~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~---~~~~~~--~~~ 1236 (1303)
++... .....|.+..++.++..+..++..+...+.+++.+..+.+|+.++++.+++++.. .+.... .+.
T Consensus 258 ~~~~~------~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~ 331 (555)
T TIGR01194 258 AAAMF------ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAH 331 (555)
T ss_pred HHHHh------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccccc
Confidence 11111 1234577778888888999999999999999999999999999998643221111 000000 011
Q ss_pred CCCcceEEEEEEEEEeCCC---CCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1237 WPSSGSIKFEDVVLRYRPE---LPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1237 wp~~G~I~f~nVsf~Y~~~---~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
....++|+|+||+|+|++. .+++|+|+||+|++||++||||+||||||||+++|.|+|+|++|+|+
T Consensus 332 ~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~ 400 (555)
T TIGR01194 332 DKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEIL 400 (555)
T ss_pred CCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 1234789999999999643 23699999999999999999999999999999999999999999985
No 64
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=1.8e-33 Score=354.36 Aligned_cols=370 Identities=17% Similarity=0.246 Sum_probs=287.2
Q ss_pred HHHHHHHHHHHHhhhhHHHhhhcccccCCCCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 925 LFACYLSTEVLRISSSTWLSFWTDQSTSKNYNP--GFYIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSIL 1002 (1303)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll 1002 (1303)
.+++.++..++....+++++...+......... ..+.++++++.++..++.+++.+...+.+.+....+|+.++++++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~ 98 (571)
T TIGR02203 19 AGVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLL 98 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455566666677766555332211111 222334555666667777888888999999999999999999999
Q ss_pred cCcccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1003 RAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQSTA 1082 (1303)
Q Consensus 1003 ~~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~~~~pl~~~~~~i~~~~~~~~ 1082 (1303)
+.|.++|++.+.|++++|+++|++.+++.+...+..++..++.++..++++++.+|.+.++++++.++..++..++.+..
T Consensus 99 ~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~ 178 (571)
T TIGR02203 99 GLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRL 178 (571)
T ss_pred cCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988888888888888888888888888887777766666666667777777
Q ss_pred HHHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1083 REVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMIWLIATF 1162 (1303)
Q Consensus 1083 r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~ 1162 (1303)
++..+...+..++..+.+.|+++|+++||+++.++++.+++.+..+...+..........+.....+++..+...++..+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (571)
T TIGR02203 179 RRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFI 258 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777788899999999999999999999999999999998888877777666666666555554443222222222
Q ss_pred HHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcce
Q 000746 1163 AVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGS 1242 (1303)
Q Consensus 1163 ~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~G~ 1242 (1303)
+.+.. ..+....|.+..++.++..+..++..+...+..++....+.+|+.++++.++|.+.. ..+. .+..++
T Consensus 259 g~~~~---~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---~~~~--~~~~~~ 330 (571)
T TIGR02203 259 ALFQA---QAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTG---TRAI--ERARGD 330 (571)
T ss_pred HHHHH---HcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC---CCCC--CCCCCe
Confidence 21110 011234677888888899999999999999999999999999999999876554321 1111 134578
Q ss_pred EEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+|+||+|+|+++.+++|+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|+
T Consensus 331 i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~ 390 (571)
T TIGR02203 331 VEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQIL 390 (571)
T ss_pred EEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEE
Confidence 999999999976556899999999999999999999999999999999999999999986
No 65
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=2.8e-33 Score=350.43 Aligned_cols=368 Identities=12% Similarity=0.119 Sum_probs=262.7
Q ss_pred HHHHHHHHHHHHHhhhhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000746 924 ILFACYLSTEVLRISSSTWLSFWTDQSTSKNYNPGFYIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILR 1003 (1303)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~ 1003 (1303)
..+++.++..++.+..++.++..+|...... ....+++++++..+...+..++..+.......+...++|+++|+|+++
T Consensus 23 ~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~ 101 (585)
T TIGR01192 23 LIVIANITLAAITIAEPILFGRIIDAISSKS-DVLPTLALWAGFGVFNTIAYVLVAREADRLAHGRRATLLTEAFGRIIS 101 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444445556677777887777776532211 111222222223333333444444445556666666777899999999
Q ss_pred CcccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1004 APMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQSTAR 1083 (1303)
Q Consensus 1004 ~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~~~~pl~~~~~~i~~~~~~~~r 1083 (1303)
+|++||+++++|++++|+++|++.++......+...+..++.+++.+++++..+|.+.++++.+.+++.++..++.+..+
T Consensus 102 l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~ 181 (585)
T TIGR01192 102 MPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGILYILIAKLVMQRTK 181 (585)
T ss_pred CCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999887777777777666666666777778887777666666666666667777777
Q ss_pred HHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q 000746 1084 EVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGI---MIWLIA 1160 (1303)
Q Consensus 1084 ~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~---~~~~~~ 1160 (1303)
+..+...+..+...+++.|+++|+++||+|+.++++.+++.+..++..+..+.......+......++..+ ++++.+
T Consensus 182 ~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g 261 (585)
T TIGR01192 182 NGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMASTISMMCILVIG 261 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777778899999999999999999999999988888877766555444333333332222222222 222222
Q ss_pred HHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCc
Q 000746 1161 TFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSS 1240 (1303)
Q Consensus 1161 ~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~ 1240 (1303)
.+.+. . +....|.+..++.++..+..++..+...+.++..+..+.+|+.++++.+++.++. ..++...+..
T Consensus 262 ~~~v~-~-----g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~---~~~~~~~~~~ 332 (585)
T TIGR01192 262 TVLVI-K-----GELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEP---ADAPELPNVK 332 (585)
T ss_pred HHHHH-c-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCC---ccCCCCCCCC
Confidence 22222 1 1234677777888888899999999999999999999999999998865443211 1111111235
Q ss_pred ceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1241 GSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1241 G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
+.|+|+||+|+|+++ .++|+|+||+|++||++||||+||||||||+++|.|+|+|++|+|+
T Consensus 333 ~~i~~~~v~~~y~~~-~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~ 393 (585)
T TIGR01192 333 GAVEFRHITFEFANS-SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQIL 393 (585)
T ss_pred CeEEEEEEEEECCCC-CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEE
Confidence 789999999999754 4699999999999999999999999999999999999999999985
No 66
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-33 Score=307.11 Aligned_cols=481 Identities=19% Similarity=0.216 Sum_probs=306.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 318 LRALNNSFGGRFWLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPAWIGYI-YA-FLIFVGVSFGVLTEAQYFQNVWRVG 395 (1303)
Q Consensus 318 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (1303)
.-.++|.+++.++..+.+.++.++.. ..++..+-+++.+.+.....++ +. .++.+..+.+.++.. .....+
T Consensus 4 ll~llr~nr~~~i~~~a~s~a~g~~g---~~lLa~in~al~e~~~~~~~~l~~f~~llllf~~ss~is~l----g~t~~g 76 (546)
T COG4615 4 LLLLLRQNRWPFISVMALSLASGALG---IGLLAFINQALIETADTSLLVLPEFLGLLLLFMVSSLISQL----GLTTLG 76 (546)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhcccceeeHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 34577888888887776666555443 3333334444432221111111 11 111111111111111 112234
Q ss_pred HHHHHHHHHHHHHHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 396 FRLRSTLVAAIFRKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQLHGLWSAPFRITLSMVLLYQQLGVASLLGSLM 475 (1303)
Q Consensus 396 ~~lr~~L~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~ 475 (1303)
.+.-..++..+.+|.+.-+.....+.++++++..++.|+..|.-.+..++.+..+.+-++.+..++++..+.+..+.++.
T Consensus 77 q~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~~s~lp~~~qa~il~l~s~aYLayLSp~mf~l~vV~ 156 (546)
T COG4615 77 QHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVW 156 (546)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeehHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 44444555567777777777777788899999999999999986667777777666666667777777777766666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 476 LVLMVPLQTFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKS--FQSRVQSIRDDELSWFRKAQFLSAFNS 553 (1303)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~--~~~~i~~~r~~e~~~~~~~~~~~~~~~ 553 (1303)
+++.+..+.+..++.-+...+..+..|+..+..+.+++|-|.++...-... +.+.+... .++.+. .......+..
T Consensus 157 ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~-a~~~r~--~~~~~n~f~~ 233 (546)
T COG4615 157 IVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPD-AQEYRH--HIIRANTFHL 233 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcc-hHHHHh--hhhhhhHHHH
Confidence 666666666666676677777778889999999999999999998753221 22222111 011111 1111111110
Q ss_pred HHHHHHh-HHhHHhhhhhhhhhC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 000746 554 FILNSIP-VVVTVVSFGTFTLLG-GDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVVNANVSLQRLEELLLAEERILMPN 631 (1303)
Q Consensus 554 ~~~~~~~-~~~~~~~f~~~~~~~-~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~ 631 (1303)
...+... ++..+++...|+... +--+...+.+....+..+..|+.++...++.+..|.++++||.++-..|+....+.
T Consensus 234 la~~~~ni~l~~lIGlvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~~~~ 313 (546)
T COG4615 234 LAVNWSNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFPR 313 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccccCCC
Confidence 1111111 112222222233221 11122234444444556789999999999999999999999998866544333333
Q ss_pred CCCCCCCCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcC--------
Q 000746 632 PPLEPELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG-------- 703 (1303)
Q Consensus 632 ~~~~~~~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~-------- 703 (1303)
+...|+...++++|+.|.|++...-+..||++|++||++-|+|.|||||||++++|.|++.|++|++. +++
T Consensus 314 ~q~~p~~~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~-ldg~pV~~e~l 392 (546)
T COG4615 314 PQAFPDWKTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEIL-LDGKPVSAEQL 392 (546)
T ss_pred CCcCCcccceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCcee-ECCccCCCCCH
Confidence 34445567899999999998777789999999999999999999999999999999999999998643 333
Q ss_pred -----eEEEEccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHH
Q 000746 704 -----TVAYVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMAR 777 (1303)
Q Consensus 704 -----~iayv~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLAR 777 (1303)
-++-|.-|-|+|+.++ -+.. .+++.+.+-++.-.+.+..+ +.+|--+ ...||-|||.|+|+--
T Consensus 393 edYR~LfSavFsDyhLF~~ll-----~~e~~as~q~i~~~LqrLel~~kts-l~d~~fs-----~~kLStGQkKRlAll~ 461 (546)
T COG4615 393 EDYRKLFSAVFSDYHLFDQLL-----GPEGKASPQLIEKWLQRLELAHKTS-LNDGRFS-----NLKLSTGQKKRLALLL 461 (546)
T ss_pred HHHHHHHHHHhhhHhhhHhhh-----CCccCCChHHHHHHHHHHHHhhhhc-ccCCccc-----ccccccchHHHHHHHH
Confidence 3555566667766543 2222 45666666565555554432 2222222 2469999999999999
Q ss_pred HHHHH---------------HHhH--------hc--CCCEEEEEecCCCcccccCEEEEEeCCEEEEe
Q 000746 778 AVFNS---------------CIKE--------EL--RGKTRILVTNQLHFLPHVDRIILVSEGMIKEE 820 (1303)
Q Consensus 778 Al~~~---------------~i~~--------~~--~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~ 820 (1303)
|++++ ++++ .+ .|||++.|||+-++...|||++.|++|+++|.
T Consensus 462 AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 462 ALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred HHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeec
Confidence 96542 1221 11 59999999999999999999999999999874
No 67
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2e-33 Score=351.39 Aligned_cols=332 Identities=16% Similarity=0.185 Sum_probs=245.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCcchhHHHhhccHHHHHHHHHHHHHHH
Q 000746 960 YIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMF 1039 (1303)
Q Consensus 960 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~ 1039 (1303)
++++++++.++..++.++..++....+.+...++|.++|++++++|++||+++++|++++|+++|++.++......+..+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~ 117 (569)
T PRK10789 38 WIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTL 117 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34444444455566677777888889999999999999999999999999999999999999999999987666666666
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHH
Q 000746 1040 MNQLWQLLSTFVLI-GIVSTISLWAIMPLLILFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDR 1118 (1303)
Q Consensus 1040 ~~~~~~~i~~~v~i-~~~~~~~~~~~~pl~~~~~~i~~~~~~~~r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~ 1118 (1303)
+..++..++.++++ ...+|.+.++++..+++..++...+.+..++..+..++..+.+.+.+.|+++|+++||+|+.+++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~ 197 (569)
T PRK10789 118 VDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDR 197 (569)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHH
Confidence 66554444444444 35666655555444444444555555555555555666678899999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHccCcccccccchhHHHHHHHHHHHHHHHHH
Q 000746 1119 MAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGI---MIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLS 1195 (1303)
Q Consensus 1119 ~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~ 1195 (1303)
+.+++.+..++..+..........+.......+..+ +++.++.+.+. . +....|.+..++.+...+..++.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~-~-----g~lt~g~l~a~~~~~~~~~~pl~ 271 (569)
T PRK10789 198 QSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVV-N-----GSLTLGQLTSFVMYLGLMIWPML 271 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-c-----CCcCHHHHHHHHHHHHHHHHHHH
Confidence 999998887766665555443333333333222222 11222222222 1 12346777778888888999999
Q ss_pred HHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceeeecCCCEEEE
Q 000746 1196 GVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGI 1275 (1303)
Q Consensus 1196 ~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaI 1275 (1303)
.+...+..++....+.+|+.++++.++|.+.. . .+. .+.+|+|+|+||+|+|+++.+++|+|+||+|+|||++||
T Consensus 272 ~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~--~-~~~--~~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~i 346 (569)
T PRK10789 272 ALAWMFNIVERGSAAYSRIRAMLAEAPVVKDG--S-EPV--PEGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGI 346 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC--C-CCC--CCCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEE
Confidence 99999999999999999999999876543211 1 111 123578999999999976556799999999999999999
Q ss_pred ECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1276 VGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1276 VGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
||+||||||||+++|.|+|+|++|+|+
T Consensus 347 vG~sGsGKSTLl~ll~g~~~p~~G~i~ 373 (569)
T PRK10789 347 CGPTGSGKSTLLSLIQRHFDVSEGDIR 373 (569)
T ss_pred ECCCCCCHHHHHHHHhcccCCCCCEEE
Confidence 999999999999999999999999985
No 68
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=8.3e-33 Score=348.37 Aligned_cols=370 Identities=19% Similarity=0.257 Sum_probs=271.1
Q ss_pred HHHHHHHHHHHHhhhhHHHhhhccccc-CCCCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 925 LFACYLSTEVLRISSSTWLSFWTDQST-SKNYN-PGFYIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSIL 1002 (1303)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~l~~w~~~~~-~~~~~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll 1002 (1303)
.+++.++...+.+..++.++...|... ..... ...+..+++++.++..+..+++.+.....+.+...++|.+++++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~ 102 (576)
T TIGR02204 23 ALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLI 102 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555666666776666665422 11111 1122333344444455566777788889999999999999999999
Q ss_pred cCcccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1003 RAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQSTA 1082 (1303)
Q Consensus 1003 ~~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~~~~pl~~~~~~i~~~~~~~~ 1082 (1303)
+.|.++|++.+.|++++|+++|++.+++.....+..++..++.+++.+++++..+|.+.++++...++.+++..++.+..
T Consensus 103 ~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~~~~~~~~~ 182 (576)
T TIGR02204 103 SLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRV 182 (576)
T ss_pred cCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988877777777777777777777777777766655544444444555566666
Q ss_pred HHHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Q 000746 1083 REVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMIW---LI 1159 (1303)
Q Consensus 1083 r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~---~~ 1159 (1303)
+...+...+......+++.|.++|+++||+|+.++++.+++.+..+...+..........+.......+..+... +.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (576)
T TIGR02204 183 RKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWV 262 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666677777778889999999999999999999999998888888776665555444444544443333222211 11
Q ss_pred HHHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCC
Q 000746 1160 ATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPS 1239 (1303)
Q Consensus 1160 ~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~ 1239 (1303)
+...+.. +....|.+..+..+...+..++..+...+.+++....+.+|+.++++.++|.+...+ .....+|.
T Consensus 263 g~~~v~~------g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~--~~~~~~~~ 334 (576)
T TIGR02204 263 GAHDVIA------GKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAH--PKTLPVPL 334 (576)
T ss_pred HHHHHHc------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCC--CccCCcCC
Confidence 2222221 123467777788888899999999999999999999999999999987655322111 11122344
Q ss_pred cceEEEEEEEEEeCCCC-CCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1240 SGSIKFEDVVLRYRPEL-PPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1240 ~G~I~f~nVsf~Y~~~~-~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
.+.|+|+||+|+|+++. +++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|+
T Consensus 335 ~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~ 398 (576)
T TIGR02204 335 RGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRIL 398 (576)
T ss_pred CceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEE
Confidence 57899999999997532 5799999999999999999999999999999999999999999985
No 69
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=2.6e-35 Score=331.17 Aligned_cols=200 Identities=24% Similarity=0.421 Sum_probs=177.8
Q ss_pred cEEEEeeEEEeCC-CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-------------cCeE
Q 000746 640 AVSIKNGNFSWDS-KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-------------RGTV 705 (1303)
Q Consensus 640 ~i~~~~~~f~~~~-~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~-------------~~~i 705 (1303)
.|+++|++++|++ ..++|+|+||+|++||+++|+|+||||||||+++|.|+++ .+|. +.+ ++.|
T Consensus 2 ~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~-I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGD-IQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred eEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcE-EEECCEEhhhCCHHHHhhhE
Confidence 5899999999964 3479999999999999999999999999999999999997 5663 433 3469
Q ss_pred EEEccCcccccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH-----
Q 000746 706 AYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF----- 780 (1303)
Q Consensus 706 ayv~Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~----- 780 (1303)
+||||+|++|++|++||+.+..++++++++++++.+++.+.+..+|++++|.++|+|.+||||||||++||||++
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999755557788999999999999999999999999999999999999999999999954
Q ss_pred ------------------HHHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchHHHHHHHHhc
Q 000746 781 ------------------NSCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLMENAG 841 (1303)
Q Consensus 781 ------------------~~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~ 841 (1303)
.+.+....+++|+|+|||+++.+..||+|++|++|++++.|+++++.++++.|++++.+.+
T Consensus 160 lllDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 238 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISPSD 238 (275)
T ss_pred EEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhhcc
Confidence 2345555568999999999999989999999999999999999999998888888887654
No 70
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=3.1e-32 Score=342.98 Aligned_cols=367 Identities=14% Similarity=0.152 Sum_probs=260.0
Q ss_pred HHHHHHHHHHHHhhhhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 000746 925 LFACYLSTEVLRISSSTWLSFWTDQSTSKNYNPGFYIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRA 1004 (1303)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~ 1004 (1303)
.+++.++..++.+..+++++...|..... .....++++++++.++..+..++......+...+...+++.++++|++++
T Consensus 24 ~~~~~i~~~~~~~~~~~~~~~iid~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 102 (588)
T PRK13657 24 LAVANVLLAAATFAEPILFGRIIDAISGK-GDIFPLLAAWAGFGLFNIIAGVLVARHADRLAHRRRLAVLTEYFERIIQL 102 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33344555566777788887777654322 11122223333333333333333334444455555566677999999999
Q ss_pred cccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1005 PMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQSTARE 1084 (1303)
Q Consensus 1005 p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~~~~pl~~~~~~i~~~~~~~~r~ 1084 (1303)
|.++|++.+.|++++|+++|++.+.+.....+..++..++..++.+++++..+|.+.++++.+++++..+..++.+..++
T Consensus 103 ~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~ 182 (588)
T PRK13657 103 PLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVYTLITTLVMRKTKD 182 (588)
T ss_pred CHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987766666666666665666666667777776666665555556666677777777
Q ss_pred HHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Q 000746 1085 VKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMI---WLIAT 1161 (1303)
Q Consensus 1085 l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~---~~~~~ 1161 (1303)
..+...+..+...+++.|+++|+++||+|+.++++.+++.+..+...+..........+.....+++..+.. ++.+.
T Consensus 183 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 262 (588)
T PRK13657 183 GQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILVLGA 262 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777889999999999999999999999999888888877766655544444444433333322222 22222
Q ss_pred HHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcc
Q 000746 1162 FAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSG 1241 (1303)
Q Consensus 1162 ~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~G 1241 (1303)
+.+.. +....|.+..++.++..+..++..+...+..+..+..+.+|+.++++.+++.+.. + ...+. .+.++
T Consensus 263 ~~v~~------g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~-~~~~~-~~~~~ 333 (588)
T PRK13657 263 ALVQK------GQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDP-P-GAIDL-GRVKG 333 (588)
T ss_pred HHHHc------CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC-C-CCCCc-CCCCC
Confidence 22221 1234677777788888899999999998999999999999999998765443211 1 11111 12357
Q ss_pred eEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1242 SIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1242 ~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
.|+|+||+|+|+++ +++|+|+||+++|||++||||+||||||||+++|+|+|+|++|+|.
T Consensus 334 ~I~~~~vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~ 393 (588)
T PRK13657 334 AVEFDDVSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRIL 393 (588)
T ss_pred eEEEEEEEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE
Confidence 89999999999743 5799999999999999999999999999999999999999999985
No 71
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-33 Score=313.87 Aligned_cols=361 Identities=17% Similarity=0.237 Sum_probs=257.8
Q ss_pred HHHHHHHhhhhHHHhhhcccccCCCCCchHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000746 930 LSTEVLRISSSTWLSFWTDQSTSKNYNPGFYIAIYTILAFG------QVTVTLLNSYWLIISSLRAAKRLHDSMLNSILR 1003 (1303)
Q Consensus 930 ~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~i~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~ 1003 (1303)
++...+....|...++..|...............|+++-++ +.++.-+++++.....+...+++-.++|+|+..
T Consensus 225 ~i~rli~~~~pi~~k~iv~~ltap~~~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~ 304 (790)
T KOG0056|consen 225 IIGRLINVSLPILSKWIVDELTAPDTFQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETELFRHLHN 304 (790)
T ss_pred HHHHHHhhhhHHhHHHHHHhhcCcchhhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHHHHHHHh
Confidence 34445555556655555554332221122223344444332 345566777778888999999999999999999
Q ss_pred CcccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH----
Q 000746 1004 APMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIG-IVSTISLWAIMPLLILFYAAYLYY---- 1078 (1303)
Q Consensus 1004 ~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~-~~~~~~~~~~~pl~~~~~~i~~~~---- 1078 (1303)
+++.|+-+..+|+++.-+.+..+.+. .+...+.++...+..+...++..+ ..++++.++++.+..++.......
T Consensus 305 LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWR 383 (790)
T KOG0056|consen 305 LSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWR 383 (790)
T ss_pred hceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhh
Confidence 99999999999999888777776665 555555555555555555444333 235666665555555443322211
Q ss_pred HHHHHHHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1079 QSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMIWL 1158 (1303)
Q Consensus 1079 ~~~~r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~ 1158 (1303)
.+..|++...+.+ -.+.-.+++-+..|+|-|++|+.+.+++.+.++++++..+.....-..++.....+..+..+.
T Consensus 384 Tk~rR~Mn~~~ne----srAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~ 459 (790)
T KOG0056|consen 384 TKARRKMNNSWNE----SRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLGLLA 459 (790)
T ss_pred HHHHHHhhhhhhh----hhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhh
Confidence 1222223233333 334557899999999999999999999999999999988777666556665555555554444
Q ss_pred HHHHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCC
Q 000746 1159 IATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWP 1238 (1303)
Q Consensus 1159 ~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp 1238 (1303)
+..+.++. +..+....|...++.+|..++..|++++...+..+|++..-.||+++++++++|.. +.+..+|.-.
T Consensus 460 gsll~aY~---Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVv---d~P~a~pl~~ 533 (790)
T KOG0056|consen 460 GSLLCAYR---VTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVV---DLPGAPPLKV 533 (790)
T ss_pred hhheeeee---eeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhh---cCCCCCCccc
Confidence 44443332 11233446788899999999999999999999999999999999999998766643 3333344445
Q ss_pred CcceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1239 SSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1239 ~~G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
.+|.|+|+||+|+|+|+. |||+||||+++||++||+|||||+||||++++|+||||.++|+|+
T Consensus 534 ~~G~i~fsnvtF~Y~p~k-~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~ 596 (790)
T KOG0056|consen 534 TQGKIEFSNVTFAYDPGK-PVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSIT 596 (790)
T ss_pred cCCeEEEEEeEEecCCCC-ceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEE
Confidence 689999999999999874 799999999999999999999999999999999999999999986
No 72
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=5.5e-31 Score=328.24 Aligned_cols=317 Identities=12% Similarity=0.084 Sum_probs=221.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 972 VTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFV 1051 (1303)
Q Consensus 972 ~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v 1051 (1303)
.++.++..++....+.++..++|.+++++++++|++||+++++|++++|+++|++.++..+. .+..++..++.+++.++
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~ 140 (547)
T PRK10522 62 MAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAA 140 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 34566778888899999999999999999999999999999999999999999999987654 35566667777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHhcChhhHhhcCcH---HHHHHHHHHHHH
Q 000746 1052 LIGIVSTISLWAIMPLLILFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAY---DRMAKINGKSMD 1128 (1303)
Q Consensus 1052 ~i~~~~~~~~~~~~pl~~~~~~i~~~~~~~~r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e---~~~~~~~~~~~d 1128 (1303)
+++..+|.+.+++++.+++.+++..++.+..++..+...+..+.+++++.|.++|+++++ ++.+ +.+.+++.+..+
T Consensus 141 ~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~ 219 (547)
T PRK10522 141 YLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQ 219 (547)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHH
Confidence 788888877776666555555555555555555555556677889999999999999995 5443 345566666555
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000746 1129 NNIRFTLANTSSNRWLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSL 1208 (1303)
Q Consensus 1129 ~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~ 1208 (1303)
...+.................++..+ ..+.+.+...... . ...+..+.+..+...+..++..+...+.+++...
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~ 293 (547)
T PRK10522 220 EYRHHIIRADTFHLSAVNWSNIMMLG---AIGLVFYMANSLG-W--ADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQ 293 (547)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhh-c--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54443332221111111111111111 1111111111000 0 1122333333344456678888888999999999
Q ss_pred hHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHH
Q 000746 1209 NAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLN 1288 (1303)
Q Consensus 1209 ~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~ 1288 (1303)
.+.+|+.++.+.++|.+. +...+. |..+.|+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||++
T Consensus 294 ~a~~ri~~l~~~~~~~~~--~~~~~~---~~~~~i~~~~v~f~y~~~-~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ 367 (547)
T PRK10522 294 VAFNKLNKLALAPYKAEF--PRPQAF---PDWQTLELRNVTFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSGKSTLAM 367 (547)
T ss_pred HHHHHHHHHhcccccccc--cccccc---CcCceEEEEEEEEEeCCC-CeEEecceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 999999999765543211 111111 223689999999999743 57999999999999999999999999999999
Q ss_pred HHhhcccCCCCeee
Q 000746 1289 ALFRIVELERGENI 1302 (1303)
Q Consensus 1289 lL~R~yd~~~G~I~ 1302 (1303)
+|.|+|+|++|+|+
T Consensus 368 ll~g~~~~~~G~i~ 381 (547)
T PRK10522 368 LLTGLYQPQSGEIL 381 (547)
T ss_pred HHhCCCCCCCeEEE
Confidence 99999999999985
No 73
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=6e-31 Score=327.98 Aligned_cols=358 Identities=12% Similarity=0.095 Sum_probs=250.6
Q ss_pred HHHHHHHHHHhhhhHHHhhhcccccC-CCCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 000746 927 ACYLSTEVLRISSSTWLSFWTDQSTS-KNYN-PGFYIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRA 1004 (1303)
Q Consensus 927 ~~~~~~~~~~~~~~~~l~~w~~~~~~-~~~~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~ 1004 (1303)
++.++...+.+..|+.++...|.... .... ...+.++++++.++..++.+++.+.....+.+...++|+++++|+++.
T Consensus 13 ~~~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~ 92 (544)
T TIGR01842 13 LFSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASFSA 92 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33444556666777777777764321 1111 122333444445556677788888889999999999999999999999
Q ss_pred cccccccCCcchhHHHhhccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1005 PMLFFHTNPIGRVINRFSRDLGDIDRNVAS-FVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQSTAR 1083 (1303)
Q Consensus 1005 p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~-~~~~~~~~~~~~i~~~v~i~~~~~~~~~~~~pl~~~~~~i~~~~~~~~r 1083 (1303)
|+. ..|..++++++|++.+++.+.. .+..++..++.++. +++++..+|.+.++++...++.+++..+..+..+
T Consensus 93 ~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~~~ 166 (544)
T TIGR01842 93 TLR-----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIY-LLVCFLLHPWIGILALGGAVVLVGLALLNNRATK 166 (544)
T ss_pred ccc-----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 984 3367789999999999987665 34444444444333 3456666766655444333333333334444445
Q ss_pred HHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q 000746 1084 EVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGI---MIWLIA 1160 (1303)
Q Consensus 1084 ~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~---~~~~~~ 1160 (1303)
+..+...+..+...+++.|+++|+++||+|+.++.+.+++.+..++..+.................++..+ +++..+
T Consensus 167 ~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 246 (544)
T TIGR01842 167 KPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLG 246 (544)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566677888999999999999999999999999988887776655544333333333323222222 222222
Q ss_pred HHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCc
Q 000746 1161 TFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSS 1240 (1303)
Q Consensus 1161 ~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~ 1240 (1303)
.+.+.. +....|.+..++.+...+..++..+...+..++....+.+|+.++++.++|.+. .... .+.+
T Consensus 247 ~~l~~~------g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~~~~---~~~~ 314 (544)
T TIGR01842 247 AYLAID------GEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP---AMPL---PEPE 314 (544)
T ss_pred HHHHHc------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC---CCCC---CCCC
Confidence 222221 123467777788888899999999999999999999999999999987655321 1111 1235
Q ss_pred ceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1241 GSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1241 G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
+.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|.
T Consensus 315 ~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~ 376 (544)
T TIGR01842 315 GHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVR 376 (544)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 78999999999976556899999999999999999999999999999999999999999985
No 74
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-30 Score=298.84 Aligned_cols=328 Identities=15% Similarity=0.181 Sum_probs=242.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHH
Q 000746 966 ILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQ 1045 (1303)
Q Consensus 966 ~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~ 1045 (1303)
+++++..+..|...+..+....++-.++|.++|+++...+..-..+...|+++||+..|++.+|+..-..+.-.+..+..
T Consensus 66 ~~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~ 145 (573)
T COG4987 66 GLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVL 145 (573)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHH
Confidence 34566666777777778889999999999999999999999999999999999999999999998766655555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHH
Q 000746 1046 LLSTFVLIGIVSTISLWAIMP-LLILFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKING 1124 (1303)
Q Consensus 1046 ~i~~~v~i~~~~~~~~~~~~p-l~~~~~~i~~~~~~~~r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~ 1124 (1303)
..++.+.+.++++..++.+.. ++++..++-..+.+..|...+.-...+..+.+++.|.+.|....+.||+++++.+.+.
T Consensus 146 ~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~ 225 (573)
T COG4987 146 IAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALE 225 (573)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHH
Confidence 555555565666655433322 2222222333344455666666666778899999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 000746 1125 KSMDNNIRFTLANTSSNRWLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVL-RQASR 1203 (1303)
Q Consensus 1125 ~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~-~~~~~ 1203 (1303)
+.-+...+..........|....+.++.++.+.....+..... ..+.. ......+++..++.....+..+. ....+
T Consensus 226 ~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~-~~G~~--~~~~aa~~ll~~f~~~eaf~~L~~~A~~~ 302 (573)
T COG4987 226 ATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQV-GAGAL--AQPGAALALLVIFAALEAFEPLAPGAFQH 302 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cCCCc--chhHHHHHHHHHHHHHHHHhhhcchhHHH
Confidence 9988888888888889999999888887776653333222211 11111 11111122222233444444444 44567
Q ss_pred HhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcc-eEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCC
Q 000746 1204 AENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSG-SIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAG 1282 (1303)
Q Consensus 1204 ~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~G-~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSG 1282 (1303)
+.....|.+|+.++.+.++|...+ +. . . |..| .++++||+|+|+++.++||+|+||++++||||||+||||||
T Consensus 303 lgq~~~Sa~Rl~~i~~q~~e~~~~-~~-~-~---~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsG 376 (573)
T COG4987 303 LGQVIASARRLNDILDQKPEVTFP-DE-Q-T---ATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSG 376 (573)
T ss_pred hhHHHHHHHHHhhhccCCcccCCC-cc-c-c---CCccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCC
Confidence 888899999999999887765432 11 1 1 1222 89999999999888779999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCCCeee
Q 000746 1283 KSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1283 KSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|||++++|.|-|||++|+|.
T Consensus 377 KSTllqLl~~~~~~~~G~i~ 396 (573)
T COG4987 377 KSTLLQLLAGAWDPQQGSIT 396 (573)
T ss_pred HHHHHHHHHhccCCCCCeee
Confidence 99999999999999999985
No 75
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=1.9e-29 Score=299.48 Aligned_cols=416 Identities=18% Similarity=0.227 Sum_probs=288.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccccCCC-----hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 392 WRVGFRLRSTLVAAIFRKTLRLTHEARKGFP-----SGKVTNMITTDANALQQIS-QQLHGLWSAPFRITLSMVLLYQQL 465 (1303)
Q Consensus 392 ~~~~~~lr~~L~~~i~~k~l~l~~~~~~~~~-----~g~i~nl~s~Dv~~i~~~~-~~~~~~~~~~~~i~~~~~~l~~~l 465 (1303)
.++..+.|..|...+.++-++-....+-... .-..=+++..|+..+.+.. .....+..+.+.++.-...||...
T Consensus 111 ~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iLw~ls 190 (604)
T COG4178 111 QMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGILWSLS 190 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4677888999999999998876532221111 0122368889988777643 333445555555555556677544
Q ss_pred HHHH---------HHHHH--HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHH
Q 000746 466 GVAS---------LLGSL--MLVLMVPLQ----TFIISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSR 530 (1303)
Q Consensus 466 g~~~---------l~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~ 530 (1303)
|... +.+.. ++++.++.. ..+++...+..-+..+.....-.....+-++...|-.|+-|+...++
T Consensus 191 g~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~~Er~~ 270 (604)
T COG4178 191 GGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEKVERRR 270 (604)
T ss_pred CcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcHHHHHH
Confidence 4221 11111 112222222 23444443333332233223233344778889999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHhHHhhhhhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 531 VQSIRDDELSWFRKAQFLSAFNSFILNS---IPVVVTVVSFGTFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQV 607 (1303)
Q Consensus 531 i~~~r~~e~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~f~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~ 607 (1303)
+++.-..-++..++.............. +..+++ ...++-....|+++.|.+..+...|+.+...+..+...+..+
T Consensus 271 l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P-~li~ap~~f~g~i~~G~lmqa~~aF~~v~sslswfi~~~~~i 349 (604)
T COG4178 271 LDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLP-ILIAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAI 349 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHH-HHhccHhhhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 8766555554444433222222222111 111111 112333456789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhc--CCCCCC--------CCCCCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCC
Q 000746 608 VNANVSLQRLEELLLAEERIL--MPNPPL--------EPELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTG 677 (1303)
Q Consensus 608 ~~a~~s~~Ri~~~l~~~~~~~--~~~~~~--------~~~~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sG 677 (1303)
.+-+++..|+.+|-..-+... ...+.. +.....|+++|++..-|+..+.+++.|+++++|+.+.|.|+||
T Consensus 350 a~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG 429 (604)
T COG4178 350 ADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESG 429 (604)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCC
Confidence 999999999999976543111 000100 1014679999999999887789999999999999999999999
Q ss_pred CChHHHHHHHhcCCCCCCCceEEE-cCeEEEEccCcccccccHHHHHccCCC---CChhhHHHHHHHHhhHHHhhcCCCC
Q 000746 678 EGKTSLVSAMLGELPPLKDASVVI-RGTVAYVPQISWIFNATLRKNILFGSE---FDPAKYWKTVDVSALQHDLDLLPDR 753 (1303)
Q Consensus 678 sGKSTLl~~llg~~~~~~g~~~~~-~~~iayv~Q~p~l~~~TireNI~~g~~---~~~~~~~~vl~~~~l~~~i~~lp~g 753 (1303)
||||||+++|.|+.|--+|....- ...+-|+||.|.+..||+||-|++.+. ++++++.+++.+|+|.+.++.+.+-
T Consensus 430 ~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~ 509 (604)
T COG4178 430 AGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEE 509 (604)
T ss_pred CCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhcc
Confidence 999999999999998877654433 234899999999999999999998752 7899999999999999999887654
Q ss_pred CCccccCCCCCCchHHHHHHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCcccccCEEE
Q 000746 754 DLTEIGERGVNISGGQKQRVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLPHVDRII 810 (1303)
Q Consensus 754 ~~T~ige~G~~LSGGQkQRiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii 810 (1303)
++ -..-||||||||||+||.+++ +.+++.+.+.|+|-|.||.......++.+
T Consensus 510 ~~-----W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l 584 (604)
T COG4178 510 DR-----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQL 584 (604)
T ss_pred Cc-----HhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhhe
Confidence 43 446799999999999999753 34567778999999999999888888877
Q ss_pred EEe
Q 000746 811 LVS 813 (1303)
Q Consensus 811 ~l~ 813 (1303)
.++
T Consensus 585 ~l~ 587 (604)
T COG4178 585 ELL 587 (604)
T ss_pred eec
Confidence 664
No 76
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2.1e-31 Score=358.15 Aligned_cols=169 Identities=22% Similarity=0.337 Sum_probs=126.8
Q ss_pred CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCC----CCCCCceEEE------------cCeEEEEccCcccc-cc
Q 000746 655 PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGEL----PPLKDASVVI------------RGTVAYVPQISWIF-NA 717 (1303)
Q Consensus 655 ~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~----~~~~g~~~~~------------~~~iayv~Q~p~l~-~~ 717 (1303)
++|+|+|+++++||+++|+||||||||||+++|.|.. .|.+|. +.+ ++.++|++|++.++ +.
T Consensus 75 ~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~-I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~l 153 (1394)
T TIGR00956 75 DILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGV-ITYDGITPEEIKKHYRGDVVYNAETDVHFPHL 153 (1394)
T ss_pred eeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeE-EEECCEehHHHHhhcCceeEEeccccccCCCC
Confidence 5899999999999999999999999999999999986 356664 332 34599999998777 46
Q ss_pred cHHHHHccCCC----------CChhhHHH-HHHHHhhHHHhhcCCCCCCccccCC-CCCCchHHHHHHHHHHHHHH----
Q 000746 718 TLRKNILFGSE----------FDPAKYWK-TVDVSALQHDLDLLPDRDLTEIGER-GVNISGGQKQRVSMARAVFN---- 781 (1303)
Q Consensus 718 TireNI~~g~~----------~~~~~~~~-vl~~~~l~~~i~~lp~g~~T~ige~-G~~LSGGQkQRiaLARAl~~---- 781 (1303)
|++||+.|+.. .+++++.+ +.+. +.+.+ .+.+-.+|.||+. ...||||||||++||||++.
T Consensus 154 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~l-gL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~v 230 (1394)
T TIGR00956 154 TVGETLDFAARCKTPQNRPDGVSREEYAKHIADV--YMATY-GLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKI 230 (1394)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH--HHHHc-CcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCE
Confidence 99999988521 22222221 1111 11112 3445567888864 45799999999999999653
Q ss_pred -------------------HHHhHhc--CCCEEEEEecCCC-c-ccccCEEEEEeCCEEEEecCHHHHH
Q 000746 782 -------------------SCIKEEL--RGKTRILVTNQLH-F-LPHVDRIILVSEGMIKEEGSFEELS 827 (1303)
Q Consensus 782 -------------------~~i~~~~--~~~TvilvtH~~~-~-l~~aD~ii~l~~G~i~~~g~~~~l~ 827 (1303)
+.+++.. .|+|+|+++|++. . ...+|+|++|++|+++..|+.+++.
T Consensus 231 lllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~ 299 (1394)
T TIGR00956 231 QCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAK 299 (1394)
T ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHH
Confidence 2344433 3799999999974 3 4679999999999999999998874
No 77
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.2e-33 Score=284.45 Aligned_cols=179 Identities=32% Similarity=0.503 Sum_probs=144.3
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-------------EcCeEE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-------------IRGTVA 706 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-------------~~~~ia 706 (1303)
.|+++|++.+|++ ..+|+|||++|++||.++|+|||||||||||++|.|+-+|++|.+.. +|+++|
T Consensus 2 mi~i~~l~K~fg~-~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vG 80 (240)
T COG1126 2 MIEIKNLSKSFGD-KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVG 80 (240)
T ss_pred eEEEEeeeEEeCC-eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcC
Confidence 4899999999975 46999999999999999999999999999999999999999874321 244689
Q ss_pred EEccCcccc-cccHHHHHccCC----CCCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHH
Q 000746 707 YVPQISWIF-NATLRKNILFGS----EFDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMAR 777 (1303)
Q Consensus 707 yv~Q~p~l~-~~TireNI~~g~----~~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLAR 777 (1303)
+|+|+..|| +.|+.|||..+. ..+. ++-.+.++..+|.+-.+..| .+||||||||+||||
T Consensus 81 mVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQqQRVAIAR 149 (240)
T COG1126 81 MVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQQRVAIAR 149 (240)
T ss_pred eecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHHHHHHHHH
Confidence 999999999 679999999863 2222 23344555566665555444 679999999999999
Q ss_pred HH--------HH------------H---HHhHhc-CCCEEEEEecCCCcccc-cCEEEEEeCCEEEEecCHHHHHhcc
Q 000746 778 AV--------FN------------S---CIKEEL-RGKTRILVTNQLHFLPH-VDRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 778 Al--------~~------------~---~i~~~~-~~~TvilvtH~~~~l~~-aD~ii~l~~G~i~~~g~~~~l~~~~ 830 (1303)
|+ || + .+.+.. .|.|.|+|||.+.+.+. ||||+.|++|+|+++|+++++..++
T Consensus 150 ALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p 227 (240)
T COG1126 150 ALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227 (240)
T ss_pred HHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence 94 22 2 222322 68999999999999875 8999999999999999999987653
No 78
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-29 Score=295.97 Aligned_cols=336 Identities=18% Similarity=0.217 Sum_probs=263.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCcchhHHHhhccHHHHHHHHHHHHHH
Q 000746 959 FYIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNM 1038 (1303)
Q Consensus 959 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~ 1038 (1303)
.+++.+++..++..+....+.....+++.++..++|+++++++.+.+..|-++.|+|+..+.++.-++.++..+..+++.
T Consensus 41 ~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq 120 (559)
T COG4988 41 PLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQ 120 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556667777777788888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHhcChhhHhhcCc
Q 000746 1039 FMNQLWQLLSTFVLIGIVSTISLWA---IMPLLILFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKA 1115 (1303)
Q Consensus 1039 ~~~~~~~~i~~~v~i~~~~~~~~~~---~~pl~~~~~~i~~~~~~~~r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~ 1115 (1303)
++...+..+..++.++..+|..+++ ..|++++++++ .....+...+..-.+...+.++|.+.+.|+.|+|+|+.
T Consensus 121 ~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMil---vg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~ 197 (559)
T COG4988 121 MFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMIL---VGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGR 197 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcc
Confidence 8888887777777778777765544 44555555443 33334444444455667889999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcccccccchhHHHHHHHHHHHHHHHHH
Q 000746 1116 YDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLS 1195 (1303)
Q Consensus 1116 e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~ 1195 (1303)
.+...++..+..++..+..+.....+.-.+..+|++..+.+.+++++....-...+....+.+.+.+. .+..+..|+.
T Consensus 198 ~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~Li--LAPEff~PlR 275 (559)
T COG4988 198 TEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLI--LAPEFFQPLR 275 (559)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHH--HhHHHHHHHH
Confidence 99999999998888888888888888788888999888877777666554221101222334444443 4567889999
Q ss_pred HHHHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceeeecCCCEEEE
Q 000746 1196 GVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGI 1275 (1303)
Q Consensus 1196 ~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaI 1275 (1303)
.+...+..-.++.++.+.+..+++.|.+.++..+ .....|....+|+.+|++|+|+++. ++++|+||+++|||++||
T Consensus 276 ~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~--~~~~~~~~~~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~tal 352 (559)
T COG4988 276 DLGSFFHAAAAGEAAADKLFTLLESPVATPGSGE--KAEVANEPPIEISLENLSFRYPDGK-PALSDLNLTIKAGQLTAL 352 (559)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCcc--ccccccCCCceeeecceEEecCCCC-cccCCceeEecCCcEEEE
Confidence 9999999889999999999999988766543221 1122333345777779999998764 899999999999999999
Q ss_pred ECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1276 VGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1276 VGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
||+||||||||+++|.+|++|++|+|.
T Consensus 353 vG~SGaGKSTLl~lL~G~~~~~~G~I~ 379 (559)
T COG4988 353 VGASGAGKSTLLNLLLGFLAPTQGEIR 379 (559)
T ss_pred ECCCCCCHHHHHHHHhCcCCCCCceEE
Confidence 999999999999999999999999985
No 79
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=2.3e-30 Score=326.66 Aligned_cols=378 Identities=11% Similarity=0.060 Sum_probs=273.9
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHhhhcccccCCCCC-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 922 IMILFACYLSTEVLRISSSTWLSFWTDQSTSKNYN-----PGFYIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDS 996 (1303)
Q Consensus 922 ~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~-----~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~ 996 (1303)
+++.+++.++...+.+..+++.+...|.....+.. ...+.++++++.++..+..++..++......++.+++|++
T Consensus 98 l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~ 177 (659)
T TIGR00954 98 LILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYLLKELKLRFRVRLTRYLYSK 177 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455566677888888888877754322111 1112223334444555566666777778888999999999
Q ss_pred HHHHHHcCcccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 000746 997 MLNSILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGI-VSTISLWAIMPLLILFYAAY 1075 (1303)
Q Consensus 997 l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~-~~~~~~~~~~pl~~~~~~i~ 1075 (1303)
.+++....++.|||+ ++|++++|+++|++.+.+.+...+..++..++.+++.++.+.. .+|.+.++++...++..++.
T Consensus 178 ~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i~ 256 (659)
T TIGR00954 178 YLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGVVL 256 (659)
T ss_pred HhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 999999999999997 8999999999999999999988888888888887776666664 66766666666666667777
Q ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-
Q 000746 1076 LYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGI- 1154 (1303)
Q Consensus 1076 ~~~~~~~r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~- 1154 (1303)
+++.+..+++.+..++..+.+.+.++|.++|+++||+|+.++.+.+++.+..++..+..........+.....+++...
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 336 (659)
T TIGR00954 257 TKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKYT 336 (659)
T ss_pred HHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 7888888888888888889999999999999999999999999999998888888777777766666776666655431
Q ss_pred ---HHHHHH-HHHHHccCcccccccchhH-HHHHHH---HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCCCC
Q 000746 1155 ---MIWLIA-TFAVMQNGRAENQVAFAST-MGLLLS---YTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPG 1226 (1303)
Q Consensus 1155 ---~~~~~~-~~~v~~~~~~~~~~~~~~~-~gl~l~---~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~E~~~ 1226 (1303)
+.++++ .......+.. .+....+. ++.++. +..++..++..+.....+++...++.+|+.++++.++|...
T Consensus 337 ~~~~~~~~~g~~~~~~~~~~-~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~ 415 (659)
T TIGR00954 337 WSAVGLVAVSIPIFDKTHPA-FLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKS 415 (659)
T ss_pred HHHHHHHHHHHHHHhccccc-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111111 1111111000 01112222 332333 35677888999999999999999999999999976433110
Q ss_pred ------CCCC-CC-----------C--CCCCCCcceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHH
Q 000746 1227 ------MVES-NR-----------P--PPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSM 1286 (1303)
Q Consensus 1227 ------~~~~-~~-----------~--~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTL 1286 (1303)
..+. .. + .......|.|+|+||+|+|+++ +++|+|+||+|++||++||||++|||||||
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-~~il~~isl~i~~Ge~~~IvG~nGsGKSTL 494 (659)
T TIGR00954 416 GNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-DVLIESLSFEVPSGNHLLICGPNGCGKSSL 494 (659)
T ss_pred ccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC-CeeeecceEEECCCCEEEEECCCCCCHHHH
Confidence 0000 00 0 0001134679999999999644 479999999999999999999999999999
Q ss_pred HHHHhhcccCCCCeee
Q 000746 1287 LNALFRIVELERGENI 1302 (1303)
Q Consensus 1287 i~lL~R~yd~~~G~I~ 1302 (1303)
+++|.|+|+|++|+|.
T Consensus 495 l~lL~Gl~~~~~G~i~ 510 (659)
T TIGR00954 495 FRILGELWPVYGGRLT 510 (659)
T ss_pred HHHHhCCCCCCCCeEe
Confidence 9999999999999985
No 80
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.9e-31 Score=312.68 Aligned_cols=181 Identities=24% Similarity=0.415 Sum_probs=134.3
Q ss_pred cEEEEeeEEEeCCCC---CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCC---CceEEE------------
Q 000746 640 AVSIKNGNFSWDSKS---PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLK---DASVVI------------ 701 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~---~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~---g~~~~~------------ 701 (1303)
.++++|++..|.... ++++||||++.+||.++|+|.|||||||++++|+|++++.. +|.+.+
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 689999999996443 58999999999999999999999999999999999998761 234432
Q ss_pred -----cCeEEEEccCcc-cccc--cHHHHHc----cCCCCC-h---hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCC
Q 000746 702 -----RGTVAYVPQISW-IFNA--TLRKNIL----FGSEFD-P---AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNI 765 (1303)
Q Consensus 702 -----~~~iayv~Q~p~-l~~~--TireNI~----~g~~~~-~---~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~L 765 (1303)
.+.|||++|+|+ .+|- ||.+-|. ...+.+ + ++..+.++..++ |+.... ..-...|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl-------~~~~~~--~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGL-------PDPERR--DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCC-------CChhhh--ccCCccc
Confidence 246999999996 4553 6655554 222222 1 222333333333 332222 3456789
Q ss_pred chHHHHHHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEE
Q 000746 766 SGGQKQRVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKE 819 (1303)
Q Consensus 766 SGGQkQRiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~ 819 (1303)
|||||||+.||+|+.. +.+++.. .|.++|+|||++..+. .||+|+||.+|+++|
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999531 2233333 5899999999999975 599999999999999
Q ss_pred ecCHHHHHhc
Q 000746 820 EGSFEELSKH 829 (1303)
Q Consensus 820 ~g~~~~l~~~ 829 (1303)
.|+.+++.++
T Consensus 236 ~G~~~~i~~~ 245 (539)
T COG1123 236 TGPTEEILSN 245 (539)
T ss_pred ecCHHHHHhc
Confidence 9999998764
No 81
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.97 E-value=1e-30 Score=295.10 Aligned_cols=194 Identities=38% Similarity=0.666 Sum_probs=168.4
Q ss_pred CCCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcCeEEEEccCccccc
Q 000746 637 ELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWIFN 716 (1303)
Q Consensus 637 ~~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~~iayv~Q~p~l~~ 716 (1303)
..+.++++|+++. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|.+| .+.+.+.|+|++|++++++
T Consensus 36 ~~~~l~i~nls~~---~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G-~I~i~g~i~yv~q~~~l~~ 111 (282)
T cd03291 36 DDNNLFFSNLCLV---GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEG-KIKHSGRISFSSQFSWIMP 111 (282)
T ss_pred CCCeEEEEEEEEe---cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEEEEEeCcccccc
Confidence 3456999999996 24699999999999999999999999999999999999999886 6778889999999999999
Q ss_pred ccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH---------------
Q 000746 717 ATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN--------------- 781 (1303)
Q Consensus 717 ~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~--------------- 781 (1303)
.|++||+.++...++.++.+.++.+++.+.+..+|.+.++.+++++.+||||||||++||||++.
T Consensus 112 ~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD 191 (282)
T cd03291 112 GTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 191 (282)
T ss_pred cCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCC
Confidence 99999999876555556777888888988899999999999999999999999999999999542
Q ss_pred --------H-HHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchHHH
Q 000746 782 --------S-CIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQ 834 (1303)
Q Consensus 782 --------~-~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~ 834 (1303)
+ .+....+++|+|++||+++.+..||++++|++|++++.|+++++......+.
T Consensus 192 ~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 253 (282)
T cd03291 192 VFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSLRPDFS 253 (282)
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhcchHHH
Confidence 1 1223335789999999999998999999999999999999999876544444
No 82
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=8.6e-29 Score=283.10 Aligned_cols=334 Identities=17% Similarity=0.222 Sum_probs=234.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCcchhHHHhhccHHHHHHHHHHHHHH
Q 000746 959 FYIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNM 1038 (1303)
Q Consensus 959 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~ 1038 (1303)
..+..|.+..+++.++..++.+.+.+..+++.++.-.+.|++.+.+.++||.+..+|.+.+++..-...|...+...+..
T Consensus 75 ~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~ 154 (591)
T KOG0057|consen 75 ALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFN 154 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHH
Confidence 45567888888889999999999999999999999999999999999999999999999999988888888877777777
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHhcChhhHhhcCcHH
Q 000746 1039 FMNQLWQLLSTFVLIGIV-STISLWAIMPLLILFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYD 1117 (1303)
Q Consensus 1039 ~~~~~~~~i~~~v~i~~~-~~~~~~~~~pl~~~~~~i~~~~~~~~r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~ 1117 (1303)
++..++.+......+.+- .+...++++..+..|..+..+..+...+.++....+.........|++.+-.+||+|+.|+
T Consensus 155 i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~ 234 (591)
T KOG0057|consen 155 IIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEE 234 (591)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHH
Confidence 776665544333222221 2222222222222222111111122222333444445556678899999999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHH
Q 000746 1118 RMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGV 1197 (1303)
Q Consensus 1118 ~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~ 1197 (1303)
++.+++...+.+..+......+....+.+....+.......+..++..+ ...+....+.+.+..+...++..+++.+
T Consensus 235 ~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~g---i~~~~mtvgdlv~~n~l~~qL~~~l~~L 311 (591)
T KOG0057|consen 235 YEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNG---IAAGKMTVGDLVMVNSLLFQLSLPLNFL 311 (591)
T ss_pred HHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhccccccchhhHHHHHHHHHhHHHHH
Confidence 9999999999888887776665555555444444433333332222221 1112233566677777788888888888
Q ss_pred HHHHHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEEC
Q 000746 1198 LRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVG 1277 (1303)
Q Consensus 1198 ~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVG 1277 (1303)
...+.++..++.-.+-.+...+... +..+. +.+.-..+|.|+|+||+|+|.|+ ++||+|+||+|++||||||||
T Consensus 312 g~vyr~~~q~l~Dm~~~~~l~~~~~---~i~~~--~~~i~~~~~~I~F~dV~f~y~~k-~~iL~gvsf~I~kGekVaIvG 385 (591)
T KOG0057|consen 312 GSVYRELRQALTDMRTLFILLEVDE---DIQEA--ALPIELFGGSIEFDDVHFSYGPK-RKVLKGVSFTIPKGEKVAIVG 385 (591)
T ss_pred HHHHHHHHHHHHhHHHHHhhhhhhh---hhhhc--cCCcccCCCcEEEEeeEEEeCCC-CceecceeEEecCCCEEEEEC
Confidence 8888777776665555544322111 11111 12222356789999999999865 579999999999999999999
Q ss_pred CCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1278 RTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1278 rTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
++||||||++++|+||+| .+|+|+
T Consensus 386 ~nGsGKSTilr~LlrF~d-~sG~I~ 409 (591)
T KOG0057|consen 386 SNGSGKSTILRLLLRFFD-YSGSIL 409 (591)
T ss_pred CCCCCHHHHHHHHHHHhc-cCCcEE
Confidence 999999999999999999 999986
No 83
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.97 E-value=7e-31 Score=292.41 Aligned_cols=196 Identities=30% Similarity=0.504 Sum_probs=167.1
Q ss_pred EEEEeeEEEeCC-CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-------------cCeEE
Q 000746 641 VSIKNGNFSWDS-KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-------------RGTVA 706 (1303)
Q Consensus 641 i~~~~~~f~~~~-~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~-------------~~~ia 706 (1303)
++++|+++.|+. +.++++|+||++++||+++|+|+||||||||+++|+|+++|++|. +.+ ++.++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR-VLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCE-EEECCeehHhcCHHHHhhcEE
Confidence 468999999964 347999999999999999999999999999999999999999874 332 24599
Q ss_pred EEccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH----
Q 000746 707 YVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN---- 781 (1303)
Q Consensus 707 yv~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~---- 781 (1303)
|++|++++++.|++||+.++.. .+.++..+.++..++.+.++.+|.|.++..+..+.+||||||||++||||++.
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 9999999999999999998653 34455566667677888889999999998889999999999999999999642
Q ss_pred -------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchHHHHHH
Q 000746 782 -------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLM 837 (1303)
Q Consensus 782 -------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~ 837 (1303)
+.+.+..+++|+|++||+++.+..||++++|++|++++.|+++++.++.+.|..+.
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 234 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLY 234 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHHH
Confidence 33444446899999999999998899999999999999999999988777776543
No 84
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.97 E-value=1.8e-30 Score=292.03 Aligned_cols=200 Identities=22% Similarity=0.374 Sum_probs=171.3
Q ss_pred CCcEEEEeeEEEeCCC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcCe
Q 000746 638 LPAVSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRGT 704 (1303)
Q Consensus 638 ~~~i~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~~ 704 (1303)
.+.++++|++++|++. .++++|+||++++||+++|+|+||||||||+++|+|+++|.+|.+.. .+..
T Consensus 17 ~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~ 96 (257)
T cd03288 17 GGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSR 96 (257)
T ss_pred CceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhh
Confidence 3579999999999753 46999999999999999999999999999999999999999875331 1346
Q ss_pred EEEEccCcccccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH---
Q 000746 705 VAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN--- 781 (1303)
Q Consensus 705 iayv~Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~--- 781 (1303)
|+|++|+|++|++|++||+......+++++.++++..++.+.++.+|.|+++.+++.+.+||||||||++||||++.
T Consensus 97 i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 176 (257)
T cd03288 97 LSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSS 176 (257)
T ss_pred EEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998765445666778888889999999999999999999999999999999999999542
Q ss_pred --------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhc-chHHHHHH
Q 000746 782 --------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKH-GRLFQKLM 837 (1303)
Q Consensus 782 --------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~-~~~~~~l~ 837 (1303)
+.+.+..+++|+|++||+++.+..||+|++|++|++++.|+++++.+. ++.|++++
T Consensus 177 llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 253 (257)
T cd03288 177 ILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV 253 (257)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHH
Confidence 334444468999999999999988999999999999999999998764 34565554
No 85
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.3e-31 Score=271.63 Aligned_cols=184 Identities=24% Similarity=0.372 Sum_probs=153.2
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCce----EE--------------
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDAS----VV-------------- 700 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~----~~-------------- 700 (1303)
..++++|+++.|++ ..+|+|||++|++++++|++|||||||||||+++-+..+..+|.. +.
T Consensus 6 ~~~~~~~l~~yYg~-~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~ 84 (253)
T COG1117 6 PAIEVRDLNLYYGD-KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVV 84 (253)
T ss_pred ceeEecceeEEECc-hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHH
Confidence 46899999999974 479999999999999999999999999999999999988776422 11
Q ss_pred -EcCeEEEEccCcccccccHHHHHccCCC---CC----hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHH
Q 000746 701 -IRGTVAYVPQISWIFNATLRKNILFGSE---FD----PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQR 772 (1303)
Q Consensus 701 -~~~~iayv~Q~p~l~~~TireNI~~g~~---~~----~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQR 772 (1303)
+|++||.|+|.|--|..||.|||.+|.. .. ++..++.++.++|.+.+.. .+.+.+..|||||+||
T Consensus 85 ~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQQR 157 (253)
T COG1117 85 ELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQQR 157 (253)
T ss_pred HHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHHHH
Confidence 4678999999999999999999999843 11 3456778888888877643 2446788899999999
Q ss_pred HHHHHHH-----------------------HHHHHhHhcCCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHh
Q 000746 773 VSMARAV-----------------------FNSCIKEELRGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 773 iaLARAl-----------------------~~~~i~~~~~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
+|||||| +++.+.+..++-|+|+|||+++.. +-+|+...+-+|+++|.|+.+++..
T Consensus 158 LcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~ 237 (253)
T COG1117 158 LCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFT 237 (253)
T ss_pred HHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhc
Confidence 9999994 234566666788999999999875 5589999999999999999988865
Q ss_pred cc
Q 000746 829 HG 830 (1303)
Q Consensus 829 ~~ 830 (1303)
++
T Consensus 238 ~P 239 (253)
T COG1117 238 NP 239 (253)
T ss_pred Cc
Confidence 43
No 86
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.97 E-value=1.7e-30 Score=282.23 Aligned_cols=175 Identities=56% Similarity=0.952 Sum_probs=155.1
Q ss_pred EEEEeeEEEeCCC----CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcCeEEEEccCccccc
Q 000746 641 VSIKNGNFSWDSK----SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWIFN 716 (1303)
Q Consensus 641 i~~~~~~f~~~~~----~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~~iayv~Q~p~l~~ 716 (1303)
++++|+++.|+++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++| .+.++++|+|++|+|.+++
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G-~i~~~g~i~~~~q~~~l~~ 79 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG-SVSVPGSIAYVSQEPWIQN 79 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCC-eEEEcCEEEEEecCchhcc
Confidence 4789999999764 3699999999999999999999999999999999999999987 5677889999999999999
Q ss_pred ccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH---------------
Q 000746 717 ATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN--------------- 781 (1303)
Q Consensus 717 ~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~--------------- 781 (1303)
.|++||+.++..+++++..++++.+++.+.+..+|.|++|.+++++.+||||||||++||||+..
T Consensus 80 ~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD 159 (204)
T cd03250 80 GTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVD 159 (204)
T ss_pred CcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 99999999987777777788888889999999999999999999999999999999999999542
Q ss_pred --------H-HHhHhc-CCCEEEEEecCCCcccccCEEEEEeCCE
Q 000746 782 --------S-CIKEEL-RGKTRILVTNQLHFLPHVDRIILVSEGM 816 (1303)
Q Consensus 782 --------~-~i~~~~-~~~TvilvtH~~~~l~~aD~ii~l~~G~ 816 (1303)
+ .+.... +++|+|++||+++.+..+|++++|++|+
T Consensus 160 ~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 160 AHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 1 222222 3689999999999988899999999985
No 87
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3.3e-31 Score=284.37 Aligned_cols=179 Identities=26% Similarity=0.426 Sum_probs=143.0
Q ss_pred EEEEeeEEEeCCC----CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE---------------E
Q 000746 641 VSIKNGNFSWDSK----SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV---------------I 701 (1303)
Q Consensus 641 i~~~~~~f~~~~~----~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~---------------~ 701 (1303)
|+++++++.|... ..+|+||||+|++||+.+|+|+||+|||||++++-++-.|++|.+.. .
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7899999999762 26899999999999999999999999999999999999999986542 3
Q ss_pred cCeEEEEccCccccc-ccHHHHHccCCC---CCh-hhHHHHHH---HHhhHHHhhcCCCCCCccccCCCCCCchHHHHHH
Q 000746 702 RGTVAYVPQISWIFN-ATLRKNILFGSE---FDP-AKYWKTVD---VSALQHDLDLLPDRDLTEIGERGVNISGGQKQRV 773 (1303)
Q Consensus 702 ~~~iayv~Q~p~l~~-~TireNI~~g~~---~~~-~~~~~vl~---~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRi 773 (1303)
|++||+++|++.|++ .||.|||.|.-+ .++ +...+|.+ ..+|.+. -+....+|||||||||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk-----------~~~yP~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDK-----------ADRYPAQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhh-----------hccCchhcCcchhhHH
Confidence 568999999999996 799999999754 222 23333433 3333322 2334578999999999
Q ss_pred HHHHHHHH-------------------HHHhHhc------CCCEEEEEecCCCcccc-cCEEEEEeCCEEEEecCHHHHH
Q 000746 774 SMARAVFN-------------------SCIKEEL------RGKTRILVTNQLHFLPH-VDRIILVSEGMIKEEGSFEELS 827 (1303)
Q Consensus 774 aLARAl~~-------------------~~i~~~~------~~~TvilvtH~~~~l~~-aD~ii~l~~G~i~~~g~~~~l~ 827 (1303)
+||||+.. +.|.+.+ -|-|+++|||.++.++. |||+.+|++|+++|+|+..++.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 99999642 1121221 48999999999999875 9999999999999999999987
Q ss_pred hcc
Q 000746 828 KHG 830 (1303)
Q Consensus 828 ~~~ 830 (1303)
.++
T Consensus 231 ~~P 233 (339)
T COG1135 231 ANP 233 (339)
T ss_pred cCc
Confidence 654
No 88
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.97 E-value=2.6e-29 Score=312.91 Aligned_cols=185 Identities=23% Similarity=0.299 Sum_probs=136.0
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-EcCeEEEEccCccccc-c
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-IRGTVAYVPQISWIFN-A 717 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-~~~~iayv~Q~p~l~~-~ 717 (1303)
.++++|++++|+++.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+.. .+..|+|++|+|+++. .
T Consensus 4 ~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~ 83 (552)
T TIGR03719 4 IYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTK 83 (552)
T ss_pred EEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCCC
Confidence 5899999999973357999999999999999999999999999999999999999875432 1357999999999884 6
Q ss_pred cHHHHHccCCCC------------------Ch---------hhHHHHHHHHhhH-------HHhhcCCCCCCccccCCCC
Q 000746 718 TLRKNILFGSEF------------------DP---------AKYWKTVDVSALQ-------HDLDLLPDRDLTEIGERGV 763 (1303)
Q Consensus 718 TireNI~~g~~~------------------~~---------~~~~~vl~~~~l~-------~~i~~lp~g~~T~ige~G~ 763 (1303)
|++|||.++... ++ +++.++++.++.. +.++.+ |.. .......
T Consensus 84 tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~-~~~~~~~ 160 (552)
T TIGR03719 84 TVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL--RCP-PWDADVT 160 (552)
T ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC--CCC-cccCchh
Confidence 999999875210 01 1233333333321 122222 111 1234567
Q ss_pred CCchHHHHHHHHHHHHHH-------------------HHHhHhc--CCCEEEEEecCCCcccc-cCEEEEEeCCEEE-Ee
Q 000746 764 NISGGQKQRVSMARAVFN-------------------SCIKEEL--RGKTRILVTNQLHFLPH-VDRIILVSEGMIK-EE 820 (1303)
Q Consensus 764 ~LSGGQkQRiaLARAl~~-------------------~~i~~~~--~~~TvilvtH~~~~l~~-aD~ii~l~~G~i~-~~ 820 (1303)
+||||||||++||||++. +.+.+.+ .+.|+|+|||+++.+.. ||+|++|++|+++ ..
T Consensus 161 ~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l~~g~i~~~~ 240 (552)
T TIGR03719 161 KLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWE 240 (552)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEECCEEEEec
Confidence 899999999999999642 1122222 14699999999998765 8999999999976 67
Q ss_pred cCHHHHH
Q 000746 821 GSFEELS 827 (1303)
Q Consensus 821 g~~~~l~ 827 (1303)
|++++..
T Consensus 241 g~~~~~~ 247 (552)
T TIGR03719 241 GNYSSWL 247 (552)
T ss_pred CCHHHHH
Confidence 8877654
No 89
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.97 E-value=3.1e-31 Score=275.50 Aligned_cols=178 Identities=26% Similarity=0.405 Sum_probs=144.2
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcCeEEEE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRGTVAYV 708 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~~iayv 708 (1303)
|+++|+++.|.+ ..+++|+||+|++||+++++|||||||||+|+.|.|+++|++|.+.. +|.+||||
T Consensus 2 I~~~nvsk~y~~-~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYv 80 (309)
T COG1125 2 IEFENVSKRYGN-KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYV 80 (309)
T ss_pred ceeeeeehhcCC-ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhh
Confidence 789999999984 57999999999999999999999999999999999999999985432 46789999
Q ss_pred ccCcccc-cccHHHHHccCC---CCChhhH----HHHHHHHhhHH--HhhcCCCCCCccccCCCCCCchHHHHHHHHHHH
Q 000746 709 PQISWIF-NATLRKNILFGS---EFDPAKY----WKTVDVSALQH--DLDLLPDRDLTEIGERGVNISGGQKQRVSMARA 778 (1303)
Q Consensus 709 ~Q~p~l~-~~TireNI~~g~---~~~~~~~----~~vl~~~~l~~--~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARA 778 (1303)
-|+.-|| +.||.|||..-- .+++++. .+.++..+|+. ..+. ....|||||+|||.+|||
T Consensus 81 iQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~R-----------yP~eLSGGQQQRVGv~RA 149 (309)
T COG1125 81 IQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADR-----------YPHELSGGQQQRVGVARA 149 (309)
T ss_pred hhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhc-----------CchhcCcchhhHHHHHHH
Confidence 9999999 789999998653 3566544 34444455542 1222 346799999999999999
Q ss_pred HHH-------------------HHHhHh----c--CCCEEEEEecCCCc-ccccCEEEEEeCCEEEEecCHHHHHhcc
Q 000746 779 VFN-------------------SCIKEE----L--RGKTRILVTNQLHF-LPHVDRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 779 l~~-------------------~~i~~~----~--~~~TvilvtH~~~~-l~~aD~ii~l~~G~i~~~g~~~~l~~~~ 830 (1303)
+.. +.+.+. . -++|+|+|||+++. ++.+|||.+|++|+|++.|+|+++.+++
T Consensus 150 LAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~P 227 (309)
T COG1125 150 LAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANP 227 (309)
T ss_pred HhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCc
Confidence 521 122211 1 38999999999987 7889999999999999999999998764
No 90
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.97 E-value=1.1e-30 Score=293.35 Aligned_cols=179 Identities=31% Similarity=0.446 Sum_probs=149.3
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----------EcCeEEEEc
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----------IRGTVAYVP 709 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----------~~~~iayv~ 709 (1303)
.|+++|++..|++.. +++|+||+|++||+++++|||||||||||++|+|+.+|++|.+.. .++.||+|+
T Consensus 3 ~i~l~~v~K~yg~~~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVF 81 (338)
T COG3839 3 ELELKNVRKSFGSFE-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVF 81 (338)
T ss_pred EEEEeeeEEEcCCce-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEe
Confidence 589999999998654 999999999999999999999999999999999999999875432 135799999
Q ss_pred cCcccc-cccHHHHHccCCCC-------ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH
Q 000746 710 QISWIF-NATLRKNILFGSEF-------DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN 781 (1303)
Q Consensus 710 Q~p~l~-~~TireNI~~g~~~-------~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~ 781 (1303)
|+..|+ +.||+|||.|+-.. .++++.++.+..++++.++..| ..|||||||||||||||+.
T Consensus 82 Q~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaRAlVr 150 (338)
T COG3839 82 QNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALARALVR 150 (338)
T ss_pred CCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHHHHhc
Confidence 999998 56999999998653 2456777888888887777655 5699999999999999753
Q ss_pred H---------------H--------HhHhc--CCCEEEEEecCCCc-ccccCEEEEEeCCEEEEecCHHHHHhcc
Q 000746 782 S---------------C--------IKEEL--RGKTRILVTNQLHF-LPHVDRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 782 ~---------------~--------i~~~~--~~~TvilvtH~~~~-l~~aD~ii~l~~G~i~~~g~~~~l~~~~ 830 (1303)
+ . +++.. -+.|+|.|||+... ...+|+|++|++|+|.+.|++.|+.+++
T Consensus 151 ~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P 225 (338)
T COG3839 151 KPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERP 225 (338)
T ss_pred CCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCc
Confidence 2 1 11111 36899999999866 5679999999999999999999998654
No 91
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.2e-30 Score=276.02 Aligned_cols=166 Identities=28% Similarity=0.413 Sum_probs=134.4
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc--------CeEEEEccC
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR--------GTVAYVPQI 711 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~--------~~iayv~Q~ 711 (1303)
.+++++++..|+. ..+|+|+||+|++||+++|+|||||||||||++|.|+.+|++|. +.+. ..++||+|+
T Consensus 3 ~l~i~~v~~~f~~-~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~-V~~~g~~v~~p~~~~~~vFQ~ 80 (248)
T COG1116 3 LLEIEGVSKSFGG-VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGE-VLLDGRPVTGPGPDIGYVFQE 80 (248)
T ss_pred eEEEEeeEEEeCc-eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCcccCCCCCCEEEEecc
Confidence 5789999999986 57999999999999999999999999999999999999999974 4443 369999999
Q ss_pred ccccc-ccHHHHHccCCCCC-------hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH--
Q 000746 712 SWIFN-ATLRKNILFGSEFD-------PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN-- 781 (1303)
Q Consensus 712 p~l~~-~TireNI~~g~~~~-------~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~-- 781 (1303)
+-||. -||+||+.++-+.. +++..+.++.++|...-+..| ..||||||||+|||||+..
T Consensus 81 ~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiARAL~~~P 149 (248)
T COG1116 81 DALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIARALATRP 149 (248)
T ss_pred CcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHHHHhcCC
Confidence 99885 79999999986531 235666777777766555554 5799999999999999531
Q ss_pred ---------------------HHHhHhc--CCCEEEEEecCCCc-ccccCEEEEEeC--CEEE
Q 000746 782 ---------------------SCIKEEL--RGKTRILVTNQLHF-LPHVDRIILVSE--GMIK 818 (1303)
Q Consensus 782 ---------------------~~i~~~~--~~~TvilvtH~~~~-l~~aD~ii~l~~--G~i~ 818 (1303)
+.+.+.. .++|+++|||+++. +..+|||++|.+ |+|.
T Consensus 150 ~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 150 KLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred CEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 1222222 47999999999987 567999999998 4453
No 92
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=3.6e-30 Score=285.23 Aligned_cols=189 Identities=32% Similarity=0.552 Sum_probs=163.9
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-------------cCeEE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-------------RGTVA 706 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~-------------~~~ia 706 (1303)
.++++|++++|++..++++|+||++++|++++|+||||||||||+++|+|+.+|.+|. +.+ +..++
T Consensus 2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~i~ 80 (229)
T cd03254 2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQ-ILIDGIDIRDISRKSLRSMIG 80 (229)
T ss_pred eEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCE-EEECCEeHHHcCHHHHhhhEE
Confidence 4889999999975456999999999999999999999999999999999999998874 332 34599
Q ss_pred EEccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH----
Q 000746 707 YVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN---- 781 (1303)
Q Consensus 707 yv~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~---- 781 (1303)
|++|+++++++|++||+.++.+ ..+++..+.++.+++.+.++.+|.|+++.++....+||||||||++||||+..
T Consensus 81 ~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~l 160 (229)
T cd03254 81 VVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKI 160 (229)
T ss_pred EecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999998754 34566777788888999999999999999999999999999999999999542
Q ss_pred -------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 782 -------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 782 -------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
+.+....+++|+|++||+++.++.||++++|++|++++.|+.+++..+
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 161 LILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 334444468999999999999888999999999999999998877543
No 93
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.97 E-value=9.6e-31 Score=295.38 Aligned_cols=179 Identities=30% Similarity=0.472 Sum_probs=147.8
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-----------cCeEEE
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-----------RGTVAY 707 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~-----------~~~iay 707 (1303)
..++++|++.+|+ +..+++|+||+|++||++++.|||||||||+|++|.|+..|++|. +.+ ++.|++
T Consensus 4 ~~l~i~~v~k~yg-~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~-I~l~G~~i~~lpp~kR~ig~ 81 (352)
T COG3842 4 PALEIRNVSKSFG-DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGE-ILLDGEDITDVPPEKRPIGM 81 (352)
T ss_pred ceEEEEeeeeecC-CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEECCCCChhhcccce
Confidence 4689999999998 557999999999999999999999999999999999999999874 443 357999
Q ss_pred EccCcccc-cccHHHHHccCCC----CC-h---hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHH
Q 000746 708 VPQISWIF-NATLRKNILFGSE----FD-P---AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA 778 (1303)
Q Consensus 708 v~Q~p~l~-~~TireNI~~g~~----~~-~---~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARA 778 (1303)
|+|+..|| +.||+|||.||.. .. + +++.++++..+|.+.-+. +...|||||+||+|||||
T Consensus 82 VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R-----------~p~qLSGGQqQRVALARA 150 (352)
T COG3842 82 VFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADR-----------KPHQLSGGQQQRVALARA 150 (352)
T ss_pred eecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhh-----------ChhhhChHHHHHHHHHHH
Confidence 99999999 7899999999965 12 2 366667777766654333 456799999999999999
Q ss_pred HH--------H-------HHHh--------Hhc--CCCEEEEEecCCCc-ccccCEEEEEeCCEEEEecCHHHHHhcc
Q 000746 779 VF--------N-------SCIK--------EEL--RGKTRILVTNQLHF-LPHVDRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 779 l~--------~-------~~i~--------~~~--~~~TvilvtH~~~~-l~~aD~ii~l~~G~i~~~g~~~~l~~~~ 830 (1303)
|. | .-++ +.. .|.|.|+|||+-+. +..+|||++|++|+|.+.|+++|+...+
T Consensus 151 L~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 151 LVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred hhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 52 2 1111 111 38999999999876 7889999999999999999999998764
No 94
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.97 E-value=6.7e-29 Score=309.21 Aligned_cols=184 Identities=23% Similarity=0.298 Sum_probs=133.3
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-cCeEEEEccCccccc-
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-RGTVAYVPQISWIFN- 716 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~-~~~iayv~Q~p~l~~- 716 (1303)
+.++++|++++|+++.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+... +..|+||+|+|.+++
T Consensus 5 ~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~ 84 (556)
T PRK11819 5 YIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPE 84 (556)
T ss_pred EEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCC
Confidence 358999999999733579999999999999999999999999999999999999998754322 357999999999885
Q ss_pred ccHHHHHccCCC-C----------------Chhh-------HH---HHHHH-------HhhHHHhhcCCCCCCccccCCC
Q 000746 717 ATLRKNILFGSE-F----------------DPAK-------YW---KTVDV-------SALQHDLDLLPDRDLTEIGERG 762 (1303)
Q Consensus 717 ~TireNI~~g~~-~----------------~~~~-------~~---~vl~~-------~~l~~~i~~lp~g~~T~ige~G 762 (1303)
.|++||+.++.. + .++. +. +.++. ..+.+.++.+ |.. ......
T Consensus 85 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~-~~~~~~ 161 (556)
T PRK11819 85 KTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL--RCP-PWDAKV 161 (556)
T ss_pred CcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC--CCC-cccCch
Confidence 499999987521 0 0000 00 00100 0111122222 111 123445
Q ss_pred CCCchHHHHHHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEE
Q 000746 763 VNISGGQKQRVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIK 818 (1303)
Q Consensus 763 ~~LSGGQkQRiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~ 818 (1303)
.+||||||||++||||++. +.+.+. +.|+|+|||+++.+. .||+|++|++|+++
T Consensus 162 ~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~--~~tviiisHd~~~~~~~~d~i~~l~~g~i~ 239 (556)
T PRK11819 162 TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY--PGTVVAVTHDRYFLDNVAGWILELDRGRGI 239 (556)
T ss_pred hhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcCeEEEEeCCEEE
Confidence 6899999999999999642 223322 369999999999876 58999999999986
Q ss_pred -EecCHHHHH
Q 000746 819 -EEGSFEELS 827 (1303)
Q Consensus 819 -~~g~~~~l~ 827 (1303)
..|+++++.
T Consensus 240 ~~~g~~~~~~ 249 (556)
T PRK11819 240 PWEGNYSSWL 249 (556)
T ss_pred EecCCHHHHH
Confidence 678777654
No 95
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=6.7e-30 Score=284.45 Aligned_cols=194 Identities=30% Similarity=0.583 Sum_probs=165.8
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc-------------CeEEE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR-------------GTVAY 707 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~-------------~~iay 707 (1303)
++++|++++|+++.++++|+||+|++|++++|+||||||||||+++|.|+.+|.+|. +.++ ..++|
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~-v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGS-ILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCE-EEECCEEhhhCCHHHHHhhEEE
Confidence 468999999965457999999999999999999999999999999999999999874 3332 35999
Q ss_pred EccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-----
Q 000746 708 VPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN----- 781 (1303)
Q Consensus 708 v~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~----- 781 (1303)
++|+++++++|++||+.++.. .+++...+.++.+++.+.++.+|.|+++.+..+..+||||||||++||||+..
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ll 159 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPIL 159 (236)
T ss_pred ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999998753 34555667778888888889999999999999999999999999999999642
Q ss_pred ------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchHHHH
Q 000746 782 ------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQK 835 (1303)
Q Consensus 782 ------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~~ 835 (1303)
+.+....+++|+|++||+++.+..||++++|++|++++.|+.+++......++.
T Consensus 160 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~~~ 231 (236)
T cd03253 160 LLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAE 231 (236)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHHHH
Confidence 334444458899999999999988999999999999999999888766555544
No 96
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.97 E-value=9e-30 Score=315.66 Aligned_cols=169 Identities=27% Similarity=0.445 Sum_probs=127.3
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCC--CCCCCceEEE-----------------
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGEL--PPLKDASVVI----------------- 701 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~--~~~~g~~~~~----------------- 701 (1303)
++++|++++|++ .++|+|+||++++|++++|+||||||||||+++|+|+. +|++|.+..-
T Consensus 1 l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g 79 (520)
T TIGR03269 1 IEVKNLTKKFDG-KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVG 79 (520)
T ss_pred CEEEEEEEEECC-eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccc
Confidence 468999999964 47999999999999999999999999999999999996 6887743221
Q ss_pred ----------------------------cCeEEEEccC-ccccc-ccHHHHHccCCC---CCh----hhHHHHHHHHhhH
Q 000746 702 ----------------------------RGTVAYVPQI-SWIFN-ATLRKNILFGSE---FDP----AKYWKTVDVSALQ 744 (1303)
Q Consensus 702 ----------------------------~~~iayv~Q~-p~l~~-~TireNI~~g~~---~~~----~~~~~vl~~~~l~ 744 (1303)
+..++|++|+ +.++. .|++||+.++.. ++. ++..++++.+++.
T Consensus 80 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 159 (520)
T TIGR03269 80 EPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLS 159 (520)
T ss_pred cccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh
Confidence 2358999997 56665 699999987521 222 2233344444443
Q ss_pred HHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecC
Q 000746 745 HDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQ 799 (1303)
Q Consensus 745 ~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~ 799 (1303)
+. ......+||||||||++||||+.. +.+++.. .++|+|+|||+
T Consensus 160 ~~-----------~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd 228 (520)
T TIGR03269 160 HR-----------ITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHW 228 (520)
T ss_pred hh-----------hhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Confidence 22 233456799999999999999542 2344443 37899999999
Q ss_pred CCccc-ccCEEEEEeCCEEEEec
Q 000746 800 LHFLP-HVDRIILVSEGMIKEEG 821 (1303)
Q Consensus 800 ~~~l~-~aD~ii~l~~G~i~~~g 821 (1303)
++.+. .||+|++|++|+++..|
T Consensus 229 ~~~~~~~~d~i~~l~~G~i~~~g 251 (520)
T TIGR03269 229 PEVIEDLSDKAIWLENGEIKEEG 251 (520)
T ss_pred HHHHHHhcCEEEEEeCCEEeeec
Confidence 99975 59999999999986543
No 97
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.7e-29 Score=311.85 Aligned_cols=183 Identities=21% Similarity=0.313 Sum_probs=132.5
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc--CeEEEEccCccccc-c
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR--GTVAYVPQISWIFN-A 717 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~--~~iayv~Q~p~l~~-~ 717 (1303)
++++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|.|+++|++|. +.+. ..|+|++|++.++. .
T Consensus 2 l~i~~ls~~~~~-~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~-i~~~~~~~i~~~~q~~~~~~~~ 79 (530)
T PRK15064 2 LSTANITMQFGA-KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGN-VSLDPNERLGKLRQDQFAFEEF 79 (530)
T ss_pred EEEEEEEEEeCC-cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEecCCCEEEEEeccCCcCCCC
Confidence 689999999974 47999999999999999999999999999999999999999875 4443 57999999998774 5
Q ss_pred cHHHHHccCCC-C-------------C---hh---hHHHHHH----------HHhhHHHhhcCCCCCCccc-cCCCCCCc
Q 000746 718 TLRKNILFGSE-F-------------D---PA---KYWKTVD----------VSALQHDLDLLPDRDLTEI-GERGVNIS 766 (1303)
Q Consensus 718 TireNI~~g~~-~-------------~---~~---~~~~vl~----------~~~l~~~i~~lp~g~~T~i-ge~G~~LS 766 (1303)
|++||+.++.. . . .+ .+.+..+ .....+.++.+ |..... .....+||
T Consensus 80 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~~LS 157 (530)
T PRK15064 80 TVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIPEEQHYGLMSEVA 157 (530)
T ss_pred cHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCChhHhcCchhhcC
Confidence 99999987531 0 0 00 0000000 00112223332 221111 23456899
Q ss_pred hHHHHHHHHHHHHHHH-------------------HHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEE-EecCH
Q 000746 767 GGQKQRVSMARAVFNS-------------------CIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIK-EEGSF 823 (1303)
Q Consensus 767 GGQkQRiaLARAl~~~-------------------~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~-~~g~~ 823 (1303)
||||||++||||++.+ .+.+.+ .++|+|+|||+++.+. .||+|++|++|+++ ..|++
T Consensus 158 gGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~g~~ 237 (530)
T PRK15064 158 PGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGELRVYPGNY 237 (530)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEecCCH
Confidence 9999999999996421 122222 4789999999999875 59999999999994 78888
Q ss_pred HHHH
Q 000746 824 EELS 827 (1303)
Q Consensus 824 ~~l~ 827 (1303)
++..
T Consensus 238 ~~~~ 241 (530)
T PRK15064 238 DEYM 241 (530)
T ss_pred HHHH
Confidence 8765
No 98
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.97 E-value=2e-30 Score=280.50 Aligned_cols=177 Identities=29% Similarity=0.524 Sum_probs=144.6
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcC-------------eEE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG-------------TVA 706 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~-------------~ia 706 (1303)
.++++|++|+|+ ++++++|+||++++||+++|+|||||||||||++|.|.++|.+| .+.+.+ .+|
T Consensus 2 ~L~~~~ls~~y~-~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G-~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 2 MLEVENLSFGYG-GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSG-EVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eeEEEEEEEEEC-CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCC-EEEECCCchhhcCHHHHhhhEE
Confidence 478999999998 45899999999999999999999999999999999999999887 454443 799
Q ss_pred EEccCccc-ccccHHHHHccCC-CC----------ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHH
Q 000746 707 YVPQISWI-FNATLRKNILFGS-EF----------DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVS 774 (1303)
Q Consensus 707 yv~Q~p~l-~~~TireNI~~g~-~~----------~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRia 774 (1303)
|+||++.. +.-||+|-+.+|+ |+ |++...++++.+++.+..++ .-..||||||||+.
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r-----------~~~~LSGGerQrv~ 148 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR-----------PVDELSGGERQRVL 148 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcC-----------cccccChhHHHHHH
Confidence 99999754 5779999999996 32 23345666777777654322 12469999999999
Q ss_pred HHHHHHHH-----------------------HHhHhc--CCCEEEEEecCCCc-ccccCEEEEEeCCEEEEecCHHHHHh
Q 000746 775 MARAVFNS-----------------------CIKEEL--RGKTRILVTNQLHF-LPHVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 775 LARAl~~~-----------------------~i~~~~--~~~TvilvtH~~~~-l~~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
||||+.++ .+++.. +|+|+|+|+|+++. .++||++++|++|+++.+|+++|.+.
T Consensus 149 iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT 228 (258)
T COG1120 149 IARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT 228 (258)
T ss_pred HHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcC
Confidence 99996542 223322 58999999999987 68899999999999999999998875
Q ss_pred c
Q 000746 829 H 829 (1303)
Q Consensus 829 ~ 829 (1303)
.
T Consensus 229 ~ 229 (258)
T COG1120 229 E 229 (258)
T ss_pred H
Confidence 3
No 99
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=4.9e-30 Score=285.20 Aligned_cols=193 Identities=32% Similarity=0.554 Sum_probs=165.4
Q ss_pred EEEEeeEEEeCCC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-------------cCeEE
Q 000746 641 VSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-------------RGTVA 706 (1303)
Q Consensus 641 i~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~-------------~~~ia 706 (1303)
++++|++++|++. .++++|+||++++|++++|+||||||||||+++|.|+++|++|.+ .+ ++.++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI-LIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEE-EECCEEhhhCCHHHHHhhEE
Confidence 4689999999754 369999999999999999999999999999999999999998743 32 23599
Q ss_pred EEccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH-----
Q 000746 707 YVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF----- 780 (1303)
Q Consensus 707 yv~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~----- 780 (1303)
|++|++++++.|++||+.++.. .+++++.+.++.+++.+.++.+|.|.++..+....+||||||||++||||+.
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999998754 4555666777778888899999999999999999999999999999999954
Q ss_pred ------------------HHHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchHHH
Q 000746 781 ------------------NSCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQ 834 (1303)
Q Consensus 781 ------------------~~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~ 834 (1303)
.+.+.+..+++|+|++||+++.+..||++++|++|++++.|+++++....+.++
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~ 231 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYA 231 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCcchh
Confidence 234455556899999999999988899999999999999999998876654443
No 100
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.97 E-value=5.5e-30 Score=282.16 Aligned_cols=183 Identities=28% Similarity=0.474 Sum_probs=160.8
Q ss_pred cEEEEeeEEEeCCC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcCeEE
Q 000746 640 AVSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRGTVA 706 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~~ia 706 (1303)
.++++|++++|+.. .++++|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .++.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (221)
T cd03244 2 DIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRIS 81 (221)
T ss_pred cEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEE
Confidence 47899999999753 47999999999999999999999999999999999999999875321 134699
Q ss_pred EEccCcccccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-----
Q 000746 707 YVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN----- 781 (1303)
Q Consensus 707 yv~Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~----- 781 (1303)
|++|+|.++++|++|||.+....++++..++++..++.+.+..+|.|+++..++.+.+||||||||++||||++.
T Consensus 82 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ll 161 (221)
T cd03244 82 IIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKIL 161 (221)
T ss_pred EECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999999776667777888888899999999999999999999999999999999999999642
Q ss_pred ------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecC
Q 000746 782 ------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGS 822 (1303)
Q Consensus 782 ------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~ 822 (1303)
+.+.+..+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 162 llDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 162 VLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 33444445789999999999998999999999999998875
No 101
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.97 E-value=8.3e-28 Score=321.52 Aligned_cols=180 Identities=26% Similarity=0.392 Sum_probs=142.1
Q ss_pred CcEEEEeeEEEeC-CCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-----------EcCeEE
Q 000746 639 PAVSIKNGNFSWD-SKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-----------IRGTVA 706 (1303)
Q Consensus 639 ~~i~~~~~~f~~~-~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-----------~~~~ia 706 (1303)
..++++|+++.|+ ++.++++|+||++++||+++|+||||||||||+++|.|+++|++|.... .++.++
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG 1006 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLG 1006 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEE
Confidence 3689999999996 3457999999999999999999999999999999999999999875321 134699
Q ss_pred EEccCccccc-ccHHHHHccCCC---CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHH
Q 000746 707 YVPQISWIFN-ATLRKNILFGSE---FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA 778 (1303)
Q Consensus 707 yv~Q~p~l~~-~TireNI~~g~~---~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARA 778 (1303)
||||++.+++ .|++|||.++.. .+. ++..+.++..+|. ........+||||||||++||||
T Consensus 1007 ~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~-----------~~~~~~~~~LSGGqKQRLsLArA 1075 (2272)
T TIGR01257 1007 MCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLH-----------HKRNEEAQDLSGGMQRKLSVAIA 1075 (2272)
T ss_pred EEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-----------hhhcCChhhCCHHHHHHHHHHHH
Confidence 9999998885 599999987531 222 2233334333332 22344567899999999999999
Q ss_pred HHH-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 779 VFN-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 779 l~~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
+.. +.+++..+|+|+|++||+++.+. .||+|++|++|+++..|+.++|.++
T Consensus 1076 Li~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1076 FVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 542 23444446899999999999875 5999999999999999999998653
No 102
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.97 E-value=5.2e-30 Score=266.00 Aligned_cols=188 Identities=30% Similarity=0.512 Sum_probs=152.2
Q ss_pred CCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE---------------Ec
Q 000746 638 LPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV---------------IR 702 (1303)
Q Consensus 638 ~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~---------------~~ 702 (1303)
.+.|++++++++|.+ ..+++|+||+|++||.++|+||||||||||+++|.|+++|++|.+.. ++
T Consensus 6 ~~~I~vr~v~~~fG~-~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 6 EPLIEVRGVTKSFGD-RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred cceEEEeeeeeecCC-EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 457999999999975 47999999999999999999999999999999999999999985432 35
Q ss_pred CeEEEEccCccccc-ccHHHHHccCC----CCChhhHHH----HHHHHhhHHH-hhcCCCCCCccccCCCCCCchHHHHH
Q 000746 703 GTVAYVPQISWIFN-ATLRKNILFGS----EFDPAKYWK----TVDVSALQHD-LDLLPDRDLTEIGERGVNISGGQKQR 772 (1303)
Q Consensus 703 ~~iayv~Q~p~l~~-~TireNI~~g~----~~~~~~~~~----vl~~~~l~~~-i~~lp~g~~T~ige~G~~LSGGQkQR 772 (1303)
+++|+++|+-.||+ -||+||+.|.- ..+++.+++ -+++++|..+ .+.+| ..||||++.|
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~KR 153 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMRKR 153 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHHHH
Confidence 67999999999995 59999999852 345544443 4566777666 44444 5699999999
Q ss_pred HHHHHHH-----------------------HHHHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHH
Q 000746 773 VSMARAV-----------------------FNSCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEEL 826 (1303)
Q Consensus 773 iaLARAl-----------------------~~~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l 826 (1303)
+|||||+ +++.|++.. -+.|+++|||+++.+. .||+++++.||+|..+|+++|+
T Consensus 154 vaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el 233 (263)
T COG1127 154 VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL 233 (263)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHH
Confidence 9999994 344554433 3889999999999864 5899999999999999999999
Q ss_pred Hhcch-HHHHHH
Q 000746 827 SKHGR-LFQKLM 837 (1303)
Q Consensus 827 ~~~~~-~~~~l~ 837 (1303)
.+.+. ..++++
T Consensus 234 ~~sd~P~v~qf~ 245 (263)
T COG1127 234 LASDDPWVRQFF 245 (263)
T ss_pred HhCCCHHHHHHh
Confidence 87654 344443
No 103
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.1e-29 Score=316.77 Aligned_cols=180 Identities=22% Similarity=0.293 Sum_probs=135.0
Q ss_pred CcEEEEeeEEEeCC---CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE---------------
Q 000746 639 PAVSIKNGNFSWDS---KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV--------------- 700 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~---~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~--------------- 700 (1303)
+.++++|++++|+. ..++++||||++++||+++|+|+||||||||+++|+|+++|.+|.+..
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~ 90 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIEL 90 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccccc
Confidence 46899999999963 236999999999999999999999999999999999999998874321
Q ss_pred ----------E-cCeEEEEccCc--cccc-ccHHHHHccCC----CCChh----hHHHHHHHHhhHHHhhcCCCCCCccc
Q 000746 701 ----------I-RGTVAYVPQIS--WIFN-ATLRKNILFGS----EFDPA----KYWKTVDVSALQHDLDLLPDRDLTEI 758 (1303)
Q Consensus 701 ----------~-~~~iayv~Q~p--~l~~-~TireNI~~g~----~~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~i 758 (1303)
. +..|+||+|+| .++. .||+|||.++. ..+.. +..++++..++ ++. ....
T Consensus 91 ~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL-------~~~-~~~~ 162 (623)
T PRK10261 91 SEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRI-------PEA-QTIL 162 (623)
T ss_pred ccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCC-------CCh-hhHH
Confidence 0 13699999998 4654 69999998752 12221 22223333222 110 1223
Q ss_pred cCCCCCCchHHHHHHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEE
Q 000746 759 GERGVNISGGQKQRVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILV 812 (1303)
Q Consensus 759 ge~G~~LSGGQkQRiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l 812 (1303)
.....+|||||||||+||||++. +.+++.. .++|+|+|||+++.+ ..||+|++|
T Consensus 163 ~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl 242 (623)
T PRK10261 163 SRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVM 242 (623)
T ss_pred hCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEe
Confidence 45567899999999999999542 2344432 378999999999986 469999999
Q ss_pred eCCEEEEecCHHHH
Q 000746 813 SEGMIKEEGSFEEL 826 (1303)
Q Consensus 813 ~~G~i~~~g~~~~l 826 (1303)
++|++++.|+++++
T Consensus 243 ~~G~i~~~g~~~~~ 256 (623)
T PRK10261 243 YQGEAVETGSVEQI 256 (623)
T ss_pred eCCeecccCCHHHh
Confidence 99999998887765
No 104
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.97 E-value=2.8e-30 Score=254.85 Aligned_cols=174 Identities=28% Similarity=0.445 Sum_probs=145.2
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc-----------CeEEEEc
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR-----------GTVAYVP 709 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~-----------~~iayv~ 709 (1303)
+.++++.|+|.... -..+++|++||+++|+||||||||||+++|.|+..|.+|. ++++ +.++.++
T Consensus 2 l~L~~V~~~y~~~~---~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~-i~i~g~d~t~~~P~~RPVSmlF 77 (231)
T COG3840 2 LALDDVRFSYGHLP---MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGE-ILINGVDHTASPPAERPVSMLF 77 (231)
T ss_pred ccccceEEeeCcce---EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCce-EEEcCeecCcCCcccCChhhhh
Confidence 56788999997543 2578999999999999999999999999999999999975 4433 4599999
Q ss_pred cCcccc-cccHHHHHccCCC-------CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH
Q 000746 710 QISWIF-NATLRKNILFGSE-------FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN 781 (1303)
Q Consensus 710 Q~p~l~-~~TireNI~~g~~-------~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~ 781 (1303)
|+..|| .-||.+||-+|.. .+.++++.++...+|....+.+|. .||||||||+||||++++
T Consensus 78 QEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARclvR 146 (231)
T COG3840 78 QENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARCLVR 146 (231)
T ss_pred hccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHHHhc
Confidence 999999 5799999999853 245678888888999999998883 599999999999999653
Q ss_pred H---------------HHh--------Hh--cCCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 782 S---------------CIK--------EE--LRGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 782 ~---------------~i~--------~~--~~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
+ .++ +. -++.|+++|||+++.+ +.+|+++++++|+|.++|+.+++...
T Consensus 147 ~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 147 EQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred cCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 2 111 11 1689999999999986 46999999999999999999988754
No 105
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.4e-29 Score=312.75 Aligned_cols=173 Identities=23% Similarity=0.341 Sum_probs=129.2
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC--CCCceEEE--------------cC
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP--LKDASVVI--------------RG 703 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~--~~g~~~~~--------------~~ 703 (1303)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|.|+++| ++|.+ .+ +.
T Consensus 5 ~l~~~nl~~~~~~-~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i-~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 5 LLEMKNITKTFGG-VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEI-IFEGEELQASNIRDTERA 82 (506)
T ss_pred eEEEeeeEEEeCC-eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEE-EECCEECCCCCHHHHHHC
Confidence 5899999999964 4799999999999999999999999999999999999986 67643 32 24
Q ss_pred eEEEEccCccccc-ccHHHHHccCCCC------ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHH
Q 000746 704 TVAYVPQISWIFN-ATLRKNILFGSEF------DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMA 776 (1303)
Q Consensus 704 ~iayv~Q~p~l~~-~TireNI~~g~~~------~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLA 776 (1303)
.++|++|++.++. .|++||+.++... +.++..+.+ .+.++.+ |..........+||||||||++||
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~la 155 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRA-----QKLLAQL--KLDINPATPVGNLGLGQQQLVEIA 155 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHH-----HHHHHHc--CCCCCcccchhhCCHHHHHHHHHH
Confidence 5999999998875 5999999986431 222221111 1122222 111122344568999999999999
Q ss_pred HHHHH-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEec
Q 000746 777 RAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEG 821 (1303)
Q Consensus 777 RAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g 821 (1303)
||+.. +.+.+.. +++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 156 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 225 (506)
T PRK13549 156 KALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTR 225 (506)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeec
Confidence 99542 2333332 4789999999999875 59999999999987644
No 106
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3.4e-30 Score=275.64 Aligned_cols=179 Identities=30% Similarity=0.437 Sum_probs=143.7
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-------------EcCeEE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-------------IRGTVA 706 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-------------~~~~ia 706 (1303)
.|+++|++..|+. .++++|||++|+.||.+++.|||||||||||++|.|+..|+.|.+.. -.++||
T Consensus 2 ~i~i~~~~~~~~~-~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VG 80 (345)
T COG1118 2 SIRINNVKKRFGA-FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVG 80 (345)
T ss_pred ceeehhhhhhccc-ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhccee
Confidence 3778889888874 46899999999999999999999999999999999999999974431 124699
Q ss_pred EEccCcccc-cccHHHHHccCCCC---------ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHH
Q 000746 707 YVPQISWIF-NATLRKNILFGSEF---------DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMA 776 (1303)
Q Consensus 707 yv~Q~p~l~-~~TireNI~~g~~~---------~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLA 776 (1303)
||.|+.-+| +.||.|||.||.+. ...+..+.++.|+|+..-+.- ..+||||||||||||
T Consensus 81 fvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ry-----------P~QLSGGQrQRVALA 149 (345)
T COG1118 81 FVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRY-----------PAQLSGGQRQRVALA 149 (345)
T ss_pred EEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcC-----------chhcChHHHHHHHHH
Confidence 999999998 78999999999732 133455566677665433332 467999999999999
Q ss_pred HHH--------H-------H----HHHhHhc------CCCEEEEEecCCCc-ccccCEEEEEeCCEEEEecCHHHHHhcc
Q 000746 777 RAV--------F-------N----SCIKEEL------RGKTRILVTNQLHF-LPHVDRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 777 RAl--------~-------~----~~i~~~~------~~~TvilvtH~~~~-l~~aD~ii~l~~G~i~~~g~~~~l~~~~ 830 (1303)
||+ + | +.++.++ -+.|+++|||+.+. ++.||+|++|++|+|...|+++|....+
T Consensus 150 RALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~P 229 (345)
T COG1118 150 RALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHP 229 (345)
T ss_pred HHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcCC
Confidence 994 1 1 2233332 27899999999987 6789999999999999999999997654
No 107
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.6e-29 Score=271.71 Aligned_cols=178 Identities=32% Similarity=0.501 Sum_probs=144.2
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE---------cCeEEEEc
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI---------RGTVAYVP 709 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~---------~~~iayv~ 709 (1303)
..|+++|++++|+++ ++|+||||++++|++++|+||||||||||+|+|+|+++|.+|.+... +.+|||||
T Consensus 3 ~~i~v~nl~v~y~~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVP 81 (254)
T COG1121 3 PMIEVENLTVSYGNR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVP 81 (254)
T ss_pred cEEEEeeeEEEECCE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcC
Confidence 368999999999866 69999999999999999999999999999999999999999855432 14799999
Q ss_pred cCc---ccccccHHHHHccCCCC-----------ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHH
Q 000746 710 QIS---WIFNATLRKNILFGSEF-----------DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSM 775 (1303)
Q Consensus 710 Q~p---~l~~~TireNI~~g~~~-----------~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaL 775 (1303)
|.. |=|..||+|-+.+|... |.++..++++..++.+.. +..| ..|||||+||+-|
T Consensus 82 Q~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~-------~r~i----~~LSGGQ~QRV~l 150 (254)
T COG1121 82 QKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLR-------DRQI----GELSGGQKQRVLL 150 (254)
T ss_pred cccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhh-------CCcc----cccCcHHHHHHHH
Confidence 954 77899999999998421 346778888888876432 1233 3599999999999
Q ss_pred HHHHHH-----------------------HHHhHhc-CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 776 ARAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 776 ARAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
||||.. +.+.+.. +|+||++|||+++.+ .++|+|+.|+ +++...|++++....
T Consensus 151 ARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~~~ 228 (254)
T COG1121 151 ARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVLTE 228 (254)
T ss_pred HHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhccCH
Confidence 999642 2233332 489999999999986 5699999995 577889999988754
No 108
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.8e-29 Score=310.49 Aligned_cols=174 Identities=20% Similarity=0.257 Sum_probs=128.8
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc--------------CeE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR--------------GTV 705 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~--------------~~i 705 (1303)
.++++|++++|++ .++++|+||+|++||+++|+||||||||||+++|.|+++|++|.+ .+. ..+
T Consensus 5 ~l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i-~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 5 YISMAGIGKSFGP-VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTI-TINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred eEEEeeeEEEcCC-eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEE-EECCEECCCCCHHHHHHCCe
Confidence 5899999999964 469999999999999999999999999999999999999988754 322 359
Q ss_pred EEEccCccccc-ccHHHHHccCCC-C---------ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHH
Q 000746 706 AYVPQISWIFN-ATLRKNILFGSE-F---------DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVS 774 (1303)
Q Consensus 706 ayv~Q~p~l~~-~TireNI~~g~~-~---------~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRia 774 (1303)
+|++|++.++. .|++||+.++.. . +.++..+. ..+.++.+ |..........+||||||||++
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LSgG~~qrv~ 155 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVR-----AAMMLLRV--GLKVDLDEKVANLSISHKQMLE 155 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHH-----HHHHHHHc--CCCCCcccchhhCCHHHHHHHH
Confidence 99999998875 599999987531 0 11111111 11112221 1111123345689999999999
Q ss_pred HHHHHHH-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecC
Q 000746 775 MARAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGS 822 (1303)
Q Consensus 775 LARAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~ 822 (1303)
||||+.. +.+.+.. +++|+|+|||+++.+. .||++++|++|+++..|+
T Consensus 156 ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~ 228 (510)
T PRK09700 156 IAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGM 228 (510)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecc
Confidence 9999542 2333322 4799999999999875 699999999999876543
No 109
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.97 E-value=2.7e-29 Score=279.87 Aligned_cols=193 Identities=29% Similarity=0.535 Sum_probs=163.2
Q ss_pred EEEEeeEEEeCCC--CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc-------------CeE
Q 000746 641 VSIKNGNFSWDSK--SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR-------------GTV 705 (1303)
Q Consensus 641 i~~~~~~f~~~~~--~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~-------------~~i 705 (1303)
++++|+++.|++. .++++|+||++++||+++|+|+||||||||+++|+|+++|.+|. +.+. ..+
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~i 79 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGE-ILLDGVDIRDLNLRWLRSQI 79 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCE-EEECCEehhhcCHHHHHhhE
Confidence 4689999999742 36999999999999999999999999999999999999999874 3322 359
Q ss_pred EEEccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH---
Q 000746 706 AYVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN--- 781 (1303)
Q Consensus 706 ayv~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~--- 781 (1303)
+|++|++.+++.|++||+.++.. ..+++..+.++.+++.+.++.+|.|.++..+....+||||||||++||||+..
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 159 (238)
T cd03249 80 GLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPK 159 (238)
T ss_pred EEECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998754 34455666777778888889999999999988899999999999999999542
Q ss_pred --------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchHHH
Q 000746 782 --------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQ 834 (1303)
Q Consensus 782 --------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~ 834 (1303)
+.+.+..+++|+|++||+++.+..||++++|++|++++.|+.+++......+.
T Consensus 160 llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~ 232 (238)
T cd03249 160 ILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYA 232 (238)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcChhHH
Confidence 33444446899999999999988999999999999999999888876544433
No 110
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.96 E-value=9.8e-29 Score=304.42 Aligned_cols=171 Identities=23% Similarity=0.288 Sum_probs=130.2
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE------------cCeEEE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI------------RGTVAY 707 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~------------~~~iay 707 (1303)
.++++|++++|++ .++|+|+||++++|++++|+||||||||||+++|.|+++|++|.+..- +..++|
T Consensus 3 ~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~ 81 (490)
T PRK10938 3 SLQISQGTFRLSD-TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD 81 (490)
T ss_pred eEEEEeEEEEcCC-eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence 3789999999975 359999999999999999999999999999999999999998854320 124899
Q ss_pred EccCccc---------ccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHH
Q 000746 708 VPQISWI---------FNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA 778 (1303)
Q Consensus 708 v~Q~p~l---------~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARA 778 (1303)
++|++.+ +..|++||+.++.+ ++++..++++..++.+. ......+||||||||++||||
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la~a 149 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQDEVK-DPARCEQLAQQFGITAL-----------LDRRFKYLSTGETRKTLLCQA 149 (490)
T ss_pred eccCcchhhcccchhhccccHHHhcccchh-HHHHHHHHHHHcCCHhh-----------hhCCcccCCHHHHHHHHHHHH
Confidence 9998753 24589999876521 23445555555554332 223446799999999999999
Q ss_pred HHH-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCH
Q 000746 779 VFN-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSF 823 (1303)
Q Consensus 779 l~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~ 823 (1303)
++. +.+.+.. +++|+|++||+++.+. .||+|++|++|+++..|++
T Consensus 150 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~ 219 (490)
T PRK10938 150 LMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGER 219 (490)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 642 2333322 4789999999999875 5999999999999876543
No 111
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.96 E-value=5.8e-29 Score=308.85 Aligned_cols=177 Identities=20% Similarity=0.313 Sum_probs=129.5
Q ss_pred cEEEEeeEEEeCC---CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CCCceEE----E------
Q 000746 640 AVSIKNGNFSWDS---KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP-----LKDASVV----I------ 701 (1303)
Q Consensus 640 ~i~~~~~~f~~~~---~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~-----~~g~~~~----~------ 701 (1303)
.++++|++++|++ ..++|+|+||++++||+++|+||||||||||+++|+|+++| ++|.+.. +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 5899999999963 23699999999999999999999999999999999999986 5664321 0
Q ss_pred ------cCeEEEEccCcc--cc-cccHHHHHccCC----CCCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCC
Q 000746 702 ------RGTVAYVPQISW--IF-NATLRKNILFGS----EFDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVN 764 (1303)
Q Consensus 702 ------~~~iayv~Q~p~--l~-~~TireNI~~g~----~~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~ 764 (1303)
++.|+|++|+|. ++ ..|+++|+.++. ..+. ++..++++.+++.+. .........+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~--------~~~~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQA--------AKRLTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------HHHHhhCCcc
Confidence 136999999985 33 359999986421 1222 223333433333210 0112345568
Q ss_pred CchHHHHHHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEE
Q 000746 765 ISGGQKQRVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIK 818 (1303)
Q Consensus 765 LSGGQkQRiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~ 818 (1303)
||||||||++||||++. +.+++.. .++|+|+|||+++.+. .||+|++|++|+++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999642 2333332 3799999999999875 59999999999998
Q ss_pred EecCHH
Q 000746 819 EEGSFE 824 (1303)
Q Consensus 819 ~~g~~~ 824 (1303)
+.|+++
T Consensus 237 ~~g~~~ 242 (529)
T PRK15134 237 EQNRAA 242 (529)
T ss_pred EeCCHH
Confidence 776554
No 112
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.96 E-value=1.8e-29 Score=267.76 Aligned_cols=169 Identities=30% Similarity=0.433 Sum_probs=128.9
Q ss_pred EEEEeeEEEeCCCC---CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----------------E
Q 000746 641 VSIKNGNFSWDSKS---PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----------------I 701 (1303)
Q Consensus 641 i~~~~~~f~~~~~~---~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----------------~ 701 (1303)
++++|++..|.... ++|+++||+|++||+++|+|||||||||||+.|.|+..|++|.+.. .
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 56899999996442 6899999999999999999999999999999999999998764321 1
Q ss_pred cCeEEEEccCcccc-cccHHHHHccCCC----CC---hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHH
Q 000746 702 RGTVAYVPQISWIF-NATLRKNILFGSE----FD---PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRV 773 (1303)
Q Consensus 702 ~~~iayv~Q~p~l~-~~TireNI~~g~~----~~---~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRi 773 (1303)
+.+||||+|+..|. +.|++|||.+... .. +++..+.++..+|.+... .....+|||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~----------~~~p~eLSGGqqQRV 151 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLL----------KKKPSELSGGQQQRV 151 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhc----------cCCchhcCHHHHHHH
Confidence 34699999999877 6699999995321 11 223333333334433222 133567999999999
Q ss_pred HHHHHHHH-----------------------HHHhHh--cCCCEEEEEecCCCcccccCEEEEEeCCEEEE
Q 000746 774 SMARAVFN-----------------------SCIKEE--LRGKTRILVTNQLHFLPHVDRIILVSEGMIKE 819 (1303)
Q Consensus 774 aLARAl~~-----------------------~~i~~~--~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~ 819 (1303)
|+|||+.. +.+.+. -.|+|+|+|||+......|||++.|+||++..
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 99999653 123333 24789999999999999999999999999543
No 113
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.96 E-value=8.1e-29 Score=305.47 Aligned_cols=172 Identities=20% Similarity=0.284 Sum_probs=128.2
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-------------EcCeEE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-------------IRGTVA 706 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-------------~~~~ia 706 (1303)
.++++|++++|++ .++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..|+
T Consensus 4 ~l~~~~l~~~~~~-~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 82 (501)
T PRK11288 4 YLSFDGIGKTFPG-VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVA 82 (501)
T ss_pred eEEEeeeEEEECC-EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEE
Confidence 5899999999974 46999999999999999999999999999999999999999875421 124699
Q ss_pred EEccCccccc-ccHHHHHccCCC------CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHH
Q 000746 707 YVPQISWIFN-ATLRKNILFGSE------FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAV 779 (1303)
Q Consensus 707 yv~Q~p~l~~-~TireNI~~g~~------~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl 779 (1303)
|++|++.++. .|++||+.++.. .+..+..+- ..+.++.+. ..........+||||||||++||||+
T Consensus 83 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~--l~~~~~~~~~~LSgGq~qrv~laral 155 (501)
T PRK11288 83 IIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYE-----AREQLEHLG--VDIDPDTPLKYLSIGQRQMVEIAKAL 155 (501)
T ss_pred EEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHH-----HHHHHHHcC--CCCCcCCchhhCCHHHHHHHHHHHHH
Confidence 9999998886 599999998631 122111111 112222221 11112334568999999999999996
Q ss_pred HH-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEE
Q 000746 780 FN-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKE 819 (1303)
Q Consensus 780 ~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~ 819 (1303)
.. +.+.+.. +++|+|+|||+++.+. .||+|++|++|+++.
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~ 220 (501)
T PRK11288 156 ARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVA 220 (501)
T ss_pred HhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 42 2233322 4789999999999875 599999999999864
No 114
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.96 E-value=8.2e-29 Score=272.63 Aligned_cols=181 Identities=34% Similarity=0.583 Sum_probs=155.7
Q ss_pred cEEEEeeEEEeCCC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc-------------CeE
Q 000746 640 AVSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR-------------GTV 705 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~-------------~~i 705 (1303)
.++++|+++.|++. .++++|+||++++|++++|+||||||||||+++|+|+.+|.+|.+ .+. ..+
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSV-LLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeE-EECCEEhHHCCHHHHHhhE
Confidence 48899999999753 469999999999999999999999999999999999999988743 332 359
Q ss_pred EEEccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH---
Q 000746 706 AYVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN--- 781 (1303)
Q Consensus 706 ayv~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~--- 781 (1303)
+|++|+++++..|++||+.++.. .++++..+.++..++.+.++..|.|++|.+.+...+||||||||++||||+..
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999998999999988753 34556777888889988899999999999999999999999999999999542
Q ss_pred --------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEec
Q 000746 782 --------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEG 821 (1303)
Q Consensus 782 --------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g 821 (1303)
+.+.+..+++|+|++||+++.+..||++++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 3344444458999999999988889999999999998754
No 115
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.96 E-value=1.6e-29 Score=252.09 Aligned_cols=170 Identities=25% Similarity=0.465 Sum_probs=142.5
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE---------------EcCeE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV---------------IRGTV 705 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~---------------~~~~i 705 (1303)
|+|+||+..|+...++|+||||+|++||++-++||||||||||+++|.++..|+.|.... +|++|
T Consensus 2 I~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~I 81 (223)
T COG2884 2 IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQI 81 (223)
T ss_pred eeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhee
Confidence 789999999998877999999999999999999999999999999999999999985432 56789
Q ss_pred EEEccCcccc-cccHHHHHccCCC---CC----hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHH
Q 000746 706 AYVPQISWIF-NATLRKNILFGSE---FD----PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMAR 777 (1303)
Q Consensus 706 ayv~Q~p~l~-~~TireNI~~g~~---~~----~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLAR 777 (1303)
|+|+||.-|. +-|+.||+.|.-. .. .++..++++.++|.+-...+| ..|||||+||+||||
T Consensus 82 GvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQQRvaIAR 150 (223)
T COG2884 82 GVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQQRVAIAR 150 (223)
T ss_pred eeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchHHHHHHHHH
Confidence 9999999876 6799999998643 22 345667888888888888887 469999999999999
Q ss_pred HHHHH-----------------------HHhH-hcCCCEEEEEecCCCccccc-CEEEEEeCCEEEEec
Q 000746 778 AVFNS-----------------------CIKE-ELRGKTRILVTNQLHFLPHV-DRIILVSEGMIKEEG 821 (1303)
Q Consensus 778 Al~~~-----------------------~i~~-~~~~~TvilvtH~~~~l~~a-D~ii~l~~G~i~~~g 821 (1303)
|++++ .+.+ ...|.||+++||+.+.+... -+++.+++|+++...
T Consensus 151 AiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 151 AIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 97542 1222 12699999999999998764 679999999998654
No 116
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.96 E-value=1.4e-28 Score=303.72 Aligned_cols=169 Identities=20% Similarity=0.338 Sum_probs=125.1
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC--CCCceEEE--------------cCe
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP--LKDASVVI--------------RGT 704 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~--~~g~~~~~--------------~~~ 704 (1303)
++++|++++|++ .++|+|+||++++|++++|+||||||||||+++|.|+++| ++|. +.+ +..
T Consensus 2 l~i~~l~~~~~~-~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~-i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 2 LEMKGIVKTFGG-VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGE-IYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred EEEEeEEEEeCC-eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeE-EEECCEECCCCCHHHHHhCC
Confidence 689999999964 4699999999999999999999999999999999999986 6764 333 235
Q ss_pred EEEEccCccccc-ccHHHHHccCCCC-------ChhhHHHHHHHHhhHHHhhcC--CCCCCccccCCCCCCchHHHHHHH
Q 000746 705 VAYVPQISWIFN-ATLRKNILFGSEF-------DPAKYWKTVDVSALQHDLDLL--PDRDLTEIGERGVNISGGQKQRVS 774 (1303)
Q Consensus 705 iayv~Q~p~l~~-~TireNI~~g~~~-------~~~~~~~vl~~~~l~~~i~~l--p~g~~T~ige~G~~LSGGQkQRia 774 (1303)
++|++|++.++. .|++||+.++... +.++..+. ..+.++.+ ++..+ .....+||||||||++
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~---~~~~~~LSgG~~qrv~ 151 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLR-----AKNLLRELQLDADNV---TRPVGDYGGGQQQLVE 151 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHH-----HHHHHHHcCCCCCcc---cCchhhCCHHHHHHHH
Confidence 999999998875 5999999886431 11111111 11222222 11110 1224579999999999
Q ss_pred HHHHHHH-----------------------HHHhHh-cCCCEEEEEecCCCccc-ccCEEEEEeCCEEEE
Q 000746 775 MARAVFN-----------------------SCIKEE-LRGKTRILVTNQLHFLP-HVDRIILVSEGMIKE 819 (1303)
Q Consensus 775 LARAl~~-----------------------~~i~~~-~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~ 819 (1303)
||||++. +.+.+. .+++|+|+|||+++.+. .||+|++|++|+++.
T Consensus 152 iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~ 221 (500)
T TIGR02633 152 IAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVA 221 (500)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEee
Confidence 9999642 233332 24789999999999875 599999999998864
No 117
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.2e-29 Score=260.67 Aligned_cols=178 Identities=28% Similarity=0.445 Sum_probs=143.2
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE---------------EcCe
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV---------------IRGT 704 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~---------------~~~~ 704 (1303)
.|+++|++..||++..+|+||||+|++||+++|+|+|||||||||++|.|..+|++|.+.. +|.+
T Consensus 3 ~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~ 82 (258)
T COG3638 3 MIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRD 82 (258)
T ss_pred eEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHh
Confidence 5899999999988888999999999999999999999999999999999999999985432 2457
Q ss_pred EEEEccCcccc-cccHHHHHccCCC------------CChhhHHHHHH---HHhhHHHhhcCCCCCCccccCCCCCCchH
Q 000746 705 VAYVPQISWIF-NATLRKNILFGSE------------FDPAKYWKTVD---VSALQHDLDLLPDRDLTEIGERGVNISGG 768 (1303)
Q Consensus 705 iayv~Q~p~l~-~~TireNI~~g~~------------~~~~~~~~vl~---~~~l~~~i~~lp~g~~T~ige~G~~LSGG 768 (1303)
|||++|++-|. ..|+-+|++.|+- +++++...+++ ..++.+ ..-.+..+||||
T Consensus 83 iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~-----------~A~qra~~LSGG 151 (258)
T COG3638 83 IGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILD-----------KAYQRASTLSGG 151 (258)
T ss_pred ceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHH-----------HHHHHhccCCcc
Confidence 99999999987 5699999998752 23444444333 222222 223456789999
Q ss_pred HHHHHHHHHHHHHH-----------------------HHhH--hcCCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecC
Q 000746 769 QKQRVSMARAVFNS-----------------------CIKE--ELRGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGS 822 (1303)
Q Consensus 769 QkQRiaLARAl~~~-----------------------~i~~--~~~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~ 822 (1303)
|+|||+|||||.++ .+++ .-.|.|+|+.-|+++.. ++||||+-|++|+|+..|+
T Consensus 152 QQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~ 231 (258)
T COG3638 152 QQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGP 231 (258)
T ss_pred hhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCC
Confidence 99999999997642 1222 12589999999999985 6799999999999999999
Q ss_pred HHHHHh
Q 000746 823 FEELSK 828 (1303)
Q Consensus 823 ~~~l~~ 828 (1303)
.+|+.+
T Consensus 232 ~~el~~ 237 (258)
T COG3638 232 ASELTD 237 (258)
T ss_pred hhhhhH
Confidence 999653
No 118
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.3e-28 Score=283.58 Aligned_cols=189 Identities=24% Similarity=0.348 Sum_probs=145.2
Q ss_pred CCCCcEEEEeeEEEeCCC----CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-----------
Q 000746 636 PELPAVSIKNGNFSWDSK----SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----------- 700 (1303)
Q Consensus 636 ~~~~~i~~~~~~f~~~~~----~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----------- 700 (1303)
++.+.++++|++|.|++. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|.+|.+..
T Consensus 17 ~~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~ 96 (320)
T PRK13631 17 SDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNN 96 (320)
T ss_pred CCCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccc
Confidence 344579999999999743 36999999999999999999999999999999999999999874321
Q ss_pred -----------------EcCeEEEEccCc--ccccccHHHHHccCCC---CChhhHHHHHHHHhhHHHhhcCCCCCC-cc
Q 000746 701 -----------------IRGTVAYVPQIS--WIFNATLRKNILFGSE---FDPAKYWKTVDVSALQHDLDLLPDRDL-TE 757 (1303)
Q Consensus 701 -----------------~~~~iayv~Q~p--~l~~~TireNI~~g~~---~~~~~~~~vl~~~~l~~~i~~lp~g~~-T~ 757 (1303)
.++.|+||+|+| ++|+.|++|||.++.. .++++..+.. .+.++.+ |.. ..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~-----~~~l~~~--gL~~~~ 169 (320)
T PRK13631 97 HELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLA-----KFYLNKM--GLDDSY 169 (320)
T ss_pred ccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHH-----HHHHHHc--CCChhH
Confidence 124599999998 7899999999998742 2332222111 1222222 222 23
Q ss_pred ccCCCCCCchHHHHHHHHHHHHHH-----------------------HHHhHh-cCCCEEEEEecCCCcc-cccCEEEEE
Q 000746 758 IGERGVNISGGQKQRVSMARAVFN-----------------------SCIKEE-LRGKTRILVTNQLHFL-PHVDRIILV 812 (1303)
Q Consensus 758 ige~G~~LSGGQkQRiaLARAl~~-----------------------~~i~~~-~~~~TvilvtH~~~~l-~~aD~ii~l 812 (1303)
.+..+.+||||||||++||||+.. +.+.+. .+++|+|+|||+++.+ ..||+|++|
T Consensus 170 ~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl 249 (320)
T PRK13631 170 LERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVM 249 (320)
T ss_pred hcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 567788999999999999999642 233333 2589999999999976 579999999
Q ss_pred eCCEEEEecCHHHHHhcch
Q 000746 813 SEGMIKEEGSFEELSKHGR 831 (1303)
Q Consensus 813 ~~G~i~~~g~~~~l~~~~~ 831 (1303)
++|++++.|+++++.....
T Consensus 250 ~~G~i~~~g~~~~~~~~~~ 268 (320)
T PRK13631 250 DKGKILKTGTPYEIFTDQH 268 (320)
T ss_pred ECCEEEEeCCHHHHhcCHH
Confidence 9999999999999876543
No 119
>PLN03140 ABC transporter G family member; Provisional
Probab=99.96 E-value=6.7e-27 Score=313.10 Aligned_cols=172 Identities=26% Similarity=0.342 Sum_probs=128.9
Q ss_pred CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCC---CCceEEE----------cCeEEEEccCcccc-cccHH
Q 000746 655 PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPL---KDASVVI----------RGTVAYVPQISWIF-NATLR 720 (1303)
Q Consensus 655 ~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~---~g~~~~~----------~~~iayv~Q~p~l~-~~Tir 720 (1303)
.+|+|+|+.+++|++++|+|||||||||||++|+|.++|. +|. +.+ ++.++||+|++.++ +.||+
T Consensus 179 ~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~-I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 257 (1470)
T PLN03140 179 TILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGE-ITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVK 257 (1470)
T ss_pred eeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeE-EEECCEechhhcccceeEEecccccCCCcCcHH
Confidence 5899999999999999999999999999999999999886 653 332 45699999998776 57999
Q ss_pred HHHccCCC-------CC-------hh---------hHHHHHHHHh---------hHHHhh--cCCCCCCccccCCC-CCC
Q 000746 721 KNILFGSE-------FD-------PA---------KYWKTVDVSA---------LQHDLD--LLPDRDLTEIGERG-VNI 765 (1303)
Q Consensus 721 eNI~~g~~-------~~-------~~---------~~~~vl~~~~---------l~~~i~--~lp~g~~T~ige~G-~~L 765 (1303)
||+.|+.. ++ ++ +++...+++. .++-++ .+.+..+|.||+.. ..|
T Consensus 258 EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rgl 337 (1470)
T PLN03140 258 ETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGI 337 (1470)
T ss_pred HHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCC
Confidence 99987521 11 01 1111111111 111222 34555688898765 579
Q ss_pred chHHHHHHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCC--cccccCEEEEEeCCEEE
Q 000746 766 SGGQKQRVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLH--FLPHVDRIILVSEGMIK 818 (1303)
Q Consensus 766 SGGQkQRiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~--~l~~aD~ii~l~~G~i~ 818 (1303)
|||||||++||||++. +.+++.. .++|+|+++|++. ....+|+|++|++|+++
T Consensus 338 SGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~iv 417 (1470)
T PLN03140 338 SGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIV 417 (1470)
T ss_pred CcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEE
Confidence 9999999999999542 3344432 4889999999974 46779999999999999
Q ss_pred EecCHHHHH
Q 000746 819 EEGSFEELS 827 (1303)
Q Consensus 819 ~~g~~~~l~ 827 (1303)
.+|+.+++.
T Consensus 418 y~G~~~~~~ 426 (1470)
T PLN03140 418 YQGPRDHIL 426 (1470)
T ss_pred EeCCHHHHH
Confidence 999998875
No 120
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=6.6e-29 Score=269.57 Aligned_cols=179 Identities=29% Similarity=0.487 Sum_probs=148.7
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-------------EcCeEE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-------------IRGTVA 706 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-------------~~~~ia 706 (1303)
.++++|++|+|+++.++|+|+|++|++|+.++|+|+||||||||++.+.|+++|.+|.+.. ++++++
T Consensus 3 ~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG 82 (235)
T COG1122 3 MIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVG 82 (235)
T ss_pred eEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceE
Confidence 5789999999987668999999999999999999999999999999999999999975421 356799
Q ss_pred EEccCc--ccccccHHHHHccCCC---CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHH
Q 000746 707 YVPQIS--WIFNATLRKNILFGSE---FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMAR 777 (1303)
Q Consensus 707 yv~Q~p--~l~~~TireNI~~g~~---~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLAR 777 (1303)
||.|+| .+|..||.|.+.||.. .++ ++..++++.|++.+..+.. ..+||||||||+|||.
T Consensus 83 ~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~-----------p~~LSGGqkqRvaIA~ 151 (235)
T COG1122 83 LVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRP-----------PFNLSGGQKQRVAIAG 151 (235)
T ss_pred EEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCC-----------ccccCCcceeeHHhhH
Confidence 999999 7899999999999853 343 3566777778777654333 3679999999999999
Q ss_pred HHHH-----------------------HHHhHhc--CCCEEEEEecCCCcccc-cCEEEEEeCCEEEEecCHHHHHhc
Q 000746 778 AVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLPH-VDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 778 Al~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~~-aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
++.. +.+.+.. .++|+|++||+++.+.. ||++++|++|+++.+|+++++.++
T Consensus 152 vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 152 VLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred HHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 9531 2233332 26899999999999765 999999999999999999887654
No 121
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.5e-28 Score=286.44 Aligned_cols=179 Identities=24% Similarity=0.375 Sum_probs=143.4
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-----------cCeEEEE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-----------RGTVAYV 708 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~-----------~~~iayv 708 (1303)
.++++|+++.|+++.++|+|+||++++||+++|+||||||||||+++|+|+.+|++|. +.+ ++.|+||
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~-I~~~g~~i~~~~~~~r~ig~v 81 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGE-IWIGGRVVNELEPADRDIAMV 81 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceE-EEECCEECCCCCHHHCCEEEE
Confidence 4889999999943457999999999999999999999999999999999999999874 333 2469999
Q ss_pred ccCcccc-cccHHHHHccCCC---CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH
Q 000746 709 PQISWIF-NATLRKNILFGSE---FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF 780 (1303)
Q Consensus 709 ~Q~p~l~-~~TireNI~~g~~---~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~ 780 (1303)
+|++.+| +.||+|||.|+.. .+. ++..++++..++.+..+. ...+||||||||++||||+.
T Consensus 82 ~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LSgGq~QRvalARAL~ 150 (356)
T PRK11650 82 FQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDR-----------KPRELSGGQRQRVAMGRAIV 150 (356)
T ss_pred eCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhC-----------ChhhCCHHHHHHHHHHHHHh
Confidence 9999999 5699999998743 222 234455555566544333 33579999999999999953
Q ss_pred H-----------------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHhcc
Q 000746 781 N-----------------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 781 ~-----------------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~~~ 830 (1303)
. +.+++.. .+.|+|+|||+++.+ ..||+|++|++|++++.|+++++..+.
T Consensus 151 ~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p 226 (356)
T PRK11650 151 REPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKP 226 (356)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCC
Confidence 2 2233333 278999999999865 579999999999999999999997653
No 122
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.96 E-value=2.4e-28 Score=268.31 Aligned_cols=175 Identities=49% Similarity=0.786 Sum_probs=150.7
Q ss_pred EEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----------------EcCeE
Q 000746 642 SIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----------------IRGTV 705 (1303)
Q Consensus 642 ~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----------------~~~~i 705 (1303)
.+.|+.|+|+++.++++|+||+|++||+++|+||||||||||+++|+|+++|++|.+.. .+..+
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 81 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV 81 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence 57899999986667999999999999999999999999999999999999998874321 12469
Q ss_pred EEEccCcccccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH----
Q 000746 706 AYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN---- 781 (1303)
Q Consensus 706 ayv~Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~---- 781 (1303)
+|++|+|.+++.|++||+.++.++++++.+++++.+++.+.++.+|.|++|.++....+||||||||++||||++.
T Consensus 82 ~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~i 161 (218)
T cd03290 82 AYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNI 161 (218)
T ss_pred EEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 9999999999999999999877666667788889999988899999999999999999999999999999999542
Q ss_pred ---------------HH-----HhHhc--CCCEEEEEecCCCcccccCEEEEEeCCE
Q 000746 782 ---------------SC-----IKEEL--RGKTRILVTNQLHFLPHVDRIILVSEGM 816 (1303)
Q Consensus 782 ---------------~~-----i~~~~--~~~TvilvtH~~~~l~~aD~ii~l~~G~ 816 (1303)
+. +...+ .++|+|++||+.+.+..||++++|++|+
T Consensus 162 lllDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 162 VFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred EEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 11 11222 3689999999999998999999999884
No 123
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.9e-27 Score=297.41 Aligned_cols=183 Identities=20% Similarity=0.259 Sum_probs=126.3
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcC--eEEEEccCccccccc
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG--TVAYVPQISWIFNAT 718 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~--~iayv~Q~p~l~~~T 718 (1303)
|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|. +.+.+ .++|++|++..+..|
T Consensus 2 i~i~nls~~~g~-~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~-I~~~~~~~i~~~~q~~~~~~~~ 79 (638)
T PRK10636 2 IVFSSLQIRRGV-RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGS-YTFPGNWQLAWVNQETPALPQP 79 (638)
T ss_pred EEEEEEEEEeCC-ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEecCCCEEEEEecCCCCCCCC
Confidence 689999999975 46999999999999999999999999999999999999999874 54544 589999976555567
Q ss_pred HHHHHccCCC-CC--------------hhhHHHHHH----------HHhhHHHhhcCCCCCC-ccccCCCCCCchHHHHH
Q 000746 719 LRKNILFGSE-FD--------------PAKYWKTVD----------VSALQHDLDLLPDRDL-TEIGERGVNISGGQKQR 772 (1303)
Q Consensus 719 ireNI~~g~~-~~--------------~~~~~~vl~----------~~~l~~~i~~lp~g~~-T~ige~G~~LSGGQkQR 772 (1303)
+.+++.-+.. +. ...+..... .....+.++.+ |.. ........+||||||||
T Consensus 80 ~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gl~~~~~~~~~~~LSgGerqR 157 (638)
T PRK10636 80 ALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL--GFSNEQLERPVSDFSGGWRMR 157 (638)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCchhhcCchhhcCHHHHHH
Confidence 7666542210 00 001100000 00111122332 221 11233456799999999
Q ss_pred HHHHHHHHHH-------------------HHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEE-EecCHHHHH
Q 000746 773 VSMARAVFNS-------------------CIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIK-EEGSFEELS 827 (1303)
Q Consensus 773 iaLARAl~~~-------------------~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~-~~g~~~~l~ 827 (1303)
++||||++.+ .+.+.+ .+.|+|+|||+.+++. .||+|++|++|++. ..|++++..
T Consensus 158 v~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~~ 235 (638)
T PRK10636 158 LNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSFE 235 (638)
T ss_pred HHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCHHHHH
Confidence 9999996421 122222 1579999999999976 59999999999996 467766543
No 124
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.5e-27 Score=261.20 Aligned_cols=316 Identities=18% Similarity=0.243 Sum_probs=243.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 000746 980 YWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIV-ST 1058 (1303)
Q Consensus 980 ~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~-~~ 1058 (1303)
.++...+..+.+.+--+.|.|+..+++.|+-+..+|.+......-..-|+..+...+.+.+..++.+....+++... .|
T Consensus 4 ~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~ 83 (497)
T COG5265 4 RLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGW 83 (497)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhccc
Confidence 45566778888889999999999999999999888877766666666666666777777777777665555444433 45
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHH
Q 000746 1059 ISLWAIMPLLILFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANT 1138 (1303)
Q Consensus 1059 ~~~~~~~pl~~~~~~i~~~~~~~~r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~ 1138 (1303)
++..+.+..+++|.++........-..+|...++.+..++.-.+++-+-.|+|-|+.|+.+..++.+.++.+.+......
T Consensus 84 ~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~ 163 (497)
T COG5265 84 WFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVH 163 (497)
T ss_pred HHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHH
Confidence 55555555555444433332333344566666677788889999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhh
Q 000746 1139 SSNRWLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYI 1218 (1303)
Q Consensus 1139 ~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~ 1218 (1303)
.+-.|+++....+.............. ....+....|.+...-.+..+++.|++.+...+.++.++..-.|+.++.+
T Consensus 164 ~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~---~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl 240 (497)
T COG5265 164 VSLLVLNFGQTAIFSTGLRVMMTMSAL---GVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLL 240 (497)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhcHH---HHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhh
Confidence 777888877665544333222221111 11122344678888888999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCC-CcceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCC
Q 000746 1219 DLPSEAPGMVESNRPPPAWP-SSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELE 1297 (1303)
Q Consensus 1219 ~~~~E~~~~~~~~~~~~~wp-~~G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~ 1297 (1303)
+.+.|.. +.+..++.|| ..|.|.|+||+|.|.+.. |+|+|+||++++|+|+||||+||+||||+..+|+||||++
T Consensus 241 ~~~~~v~---d~pda~~L~~~~~g~v~F~~V~F~y~~~r-~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~ 316 (497)
T COG5265 241 DVEAEVS---DAPDAPPLWPVRLGAVAFINVSFAYDPRR-PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN 316 (497)
T ss_pred ccchhhc---cCCCCccccccccceEEEEEEEeeccccc-hhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCc
Confidence 8876654 3344566775 458999999999998774 7999999999999999999999999999999999999999
Q ss_pred CCeee
Q 000746 1298 RGENI 1302 (1303)
Q Consensus 1298 ~G~I~ 1302 (1303)
+|+|.
T Consensus 317 sG~I~ 321 (497)
T COG5265 317 SGSIT 321 (497)
T ss_pred CceEE
Confidence 99985
No 125
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.96 E-value=3.2e-25 Score=254.42 Aligned_cols=422 Identities=18% Similarity=0.221 Sum_probs=273.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcccccCCChH---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 391 VWRVGFRLRSTLVAAIFRKTLRLTHEARKGFPSG---KVTNMITTDANALQQIS-QQLHGLWSAPFRITLSMVLLYQQLG 466 (1303)
Q Consensus 391 ~~~~~~~lr~~L~~~i~~k~l~l~~~~~~~~~~g---~i~nl~s~Dv~~i~~~~-~~~~~~~~~~~~i~~~~~~l~~~lg 466 (1303)
..-...+.|..+..-++++-++-..-..-....+ .-=.+++.|+++..... .....+..+|+.++.-.+.++...|
T Consensus 146 ~~~L~Lr~R~~ltk~lh~~Y~k~~~yYkis~~d~ridNPDQrltqDv~kf~~~l~sl~s~l~~a~~di~~Y~~~l~~s~g 225 (659)
T KOG0060|consen 146 TNELYLRFRKNLTKYLHRLYFKGFTYYKLSNLDDRIDNPDQRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYTFRLFESAG 225 (659)
T ss_pred HhhhHhHHHHHHHHHHHHHHhccceEEEecccccccCChHHHHhHHHHHHHHHHHHHHHhhhccceeeehhhhHHhhhcC
Confidence 3456677888888888887776432110000000 11257889999887643 3445566677777777777777766
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 000746 467 VASLLGSLMLVL-MVPLQTFIISKMRKLTKEGLQW-TDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRK 544 (1303)
Q Consensus 467 ~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~ 544 (1303)
|..++.+...++ ...++..+.+.+.+...++.+. -|-|..+ .++..+-+.|-.|+.++......++.-+.-.+..+.
T Consensus 226 ~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfRy~h-~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~ 304 (659)
T KOG0060|consen 226 WLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFRYKH-SRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRE 304 (659)
T ss_pred cccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchhhhe-eeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHH
Confidence 654433222111 2222333333333332222222 2344443 366778889999999887777666655555555555
Q ss_pred HHHHHHHHHHHHHHHhHHhHHhhhhh-----hhh-hCCCCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 545 AQFLSAFNSFILNSIPVVVTVVSFGT-----FTL-LGGDLTPARAFTSLS----LFAVLRFPLNMLPNLLSQVVNANVSL 614 (1303)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~f~~-----~~~-~~~~l~~~~~f~~l~----l~~~l~~pl~~l~~~~~~~~~a~~s~ 614 (1303)
......+..++.+....+..++.+.+ +.. ..++++++..+..++ .+..+...+..+...-..+.+-.+-.
T Consensus 305 l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt 384 (659)
T KOG0060|consen 305 LMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLSPAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYT 384 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhhheeeEEeeeeecccccCCcCHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHH
Confidence 55555555555444433333333221 111 235678877666543 23333444555555555566666667
Q ss_pred HHHHHHHHHHhhhc-------------------CCC----CCCCCCCCcEEEEeeEEEeCCCC-CccceeeeEecCCcEE
Q 000746 615 QRLEELLLAEERIL-------------------MPN----PPLEPELPAVSIKNGNFSWDSKS-PTLSNINLDIPVGSLV 670 (1303)
Q Consensus 615 ~Ri~~~l~~~~~~~-------------------~~~----~~~~~~~~~i~~~~~~f~~~~~~-~~L~~i~l~i~~G~~~ 670 (1303)
.||.++.+.-.+.. ... +...+++..|++++|++.-|++. .+.+|+||+|+.|+-+
T Consensus 385 ~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~L 464 (659)
T KOG0060|consen 385 HRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNL 464 (659)
T ss_pred HHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeeeecCCCCCceeeeeeeeEecCCCeE
Confidence 78877764311100 000 12234556899999999988744 4677899999999999
Q ss_pred EEEcCCCCChHHHHHHHhcCCCCCCCceEE-Ec---CeEEEEccCcccccccHHHHHccCC--------CCChhhHHHHH
Q 000746 671 AIVGGTGEGKTSLVSAMLGELPPLKDASVV-IR---GTVAYVPQISWIFNATLRKNILFGS--------EFDPAKYWKTV 738 (1303)
Q Consensus 671 ~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-~~---~~iayv~Q~p~l~~~TireNI~~g~--------~~~~~~~~~vl 738 (1303)
.|+||||||||+|++.+.|+.+..+|.... .+ +.+-|+||.|+.-.||+||-+.+.. ..+++++.+.+
T Consensus 465 LItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~L 544 (659)
T KOG0060|consen 465 LITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRIL 544 (659)
T ss_pred EEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHH
Confidence 999999999999999999999877764433 22 3499999999999999999999872 24688999999
Q ss_pred HHHhhHHHhhcCCCCCCcc-ccCCCCCCchHHHHHHHHHHHHH--------HHH-----------HhHhc--CCCEEEEE
Q 000746 739 DVSALQHDLDLLPDRDLTE-IGERGVNISGGQKQRVSMARAVF--------NSC-----------IKEEL--RGKTRILV 796 (1303)
Q Consensus 739 ~~~~l~~~i~~lp~g~~T~-ige~G~~LSGGQkQRiaLARAl~--------~~~-----------i~~~~--~~~Tvilv 796 (1303)
+.++|.+-++.. +|.|++ +-|-...||+||+||+|.||-++ |+| +-+.. .|.|.|-|
T Consensus 545 e~v~L~hl~~r~-ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSV 623 (659)
T KOG0060|consen 545 ENVQLGHLLERE-GGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREMGITFISV 623 (659)
T ss_pred HHhhhhhHHHHh-CCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEe
Confidence 999998887775 455544 45667889999999999999854 332 11111 48999999
Q ss_pred ecCCCcccccCEEEEEeC
Q 000746 797 TNQLHFLPHVDRIILVSE 814 (1303)
Q Consensus 797 tH~~~~l~~aD~ii~l~~ 814 (1303)
.||.+.-++-|.++.|+.
T Consensus 624 gHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 624 GHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred ccHHHHHhhhhEEEEecC
Confidence 999999999999999975
No 126
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.4e-28 Score=255.42 Aligned_cols=179 Identities=28% Similarity=0.420 Sum_probs=140.8
Q ss_pred cEEEEeeEEEeCCCC---CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-------------EcC
Q 000746 640 AVSIKNGNFSWDSKS---PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-------------IRG 703 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~---~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-------------~~~ 703 (1303)
.++++|+++.|+.+. ++++||||+|.+||..+|+|+||||||||+++|+|+.+|.+|.+.. .++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 588999999998765 6999999999999999999999999999999999999999975432 134
Q ss_pred eEEEEccCccc-c--cccHHHHHccCC-----CCChhhHHHHHHHHhhHHH-hhcCCCCCCccccCCCCCCchHHHHHHH
Q 000746 704 TVAYVPQISWI-F--NATLRKNILFGS-----EFDPAKYWKTVDVSALQHD-LDLLPDRDLTEIGERGVNISGGQKQRVS 774 (1303)
Q Consensus 704 ~iayv~Q~p~l-~--~~TireNI~~g~-----~~~~~~~~~vl~~~~l~~~-i~~lp~g~~T~ige~G~~LSGGQkQRia 774 (1303)
.|-+|+|||.- + .-||++-|.=+- +-.+++..++++..+|.+. +... ...||||||||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~-----------P~eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRR-----------PHELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcC-----------chhcChhHHHHHH
Confidence 69999999963 2 457777765221 2224556777777777554 3333 4569999999999
Q ss_pred HHHHHH--------H-----------H----HHhHhc--CCCEEEEEecCCCcccc-cCEEEEEeCCEEEEecCHHHHHh
Q 000746 775 MARAVF--------N-----------S----CIKEEL--RGKTRILVTNQLHFLPH-VDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 775 LARAl~--------~-----------~----~i~~~~--~~~TvilvtH~~~~l~~-aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
||||+. | . .+.+.. .+-|.|+|||+++.+.+ ||||++|++|+++|.++.+++..
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 999942 1 1 122222 46799999999999865 99999999999999999999876
Q ss_pred c
Q 000746 829 H 829 (1303)
Q Consensus 829 ~ 829 (1303)
.
T Consensus 232 ~ 232 (252)
T COG1124 232 H 232 (252)
T ss_pred C
Confidence 5
No 127
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.96 E-value=1.5e-28 Score=283.92 Aligned_cols=178 Identities=25% Similarity=0.388 Sum_probs=140.2
Q ss_pred EEEEeeEEEeCCC---CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE---------------Ec
Q 000746 641 VSIKNGNFSWDSK---SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV---------------IR 702 (1303)
Q Consensus 641 i~~~~~~f~~~~~---~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~---------------~~ 702 (1303)
|+++|++++|+.+ .++|+|+||+|++||+++|+||||||||||+++|.|+.+|++|.+.. .+
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7899999999632 36999999999999999999999999999999999999999875421 14
Q ss_pred CeEEEEccCcccc-cccHHHHHccCCC---CChh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHH
Q 000746 703 GTVAYVPQISWIF-NATLRKNILFGSE---FDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVS 774 (1303)
Q Consensus 703 ~~iayv~Q~p~l~-~~TireNI~~g~~---~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRia 774 (1303)
++|+|++|++.++ +.|++||+.++.. .+.+ +..+.++..+|.+. .......||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~-----------~~~~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDK-----------HDSYPSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHHHH
Confidence 4799999999998 4799999997532 2222 23334444444322 22345689999999999
Q ss_pred HHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHh
Q 000746 775 MARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 775 LARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
||||+.. +.+++.. .+.|+|+|||+++.+. .||+|++|++|++++.|+++++..
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 9999642 2333332 2789999999999985 599999999999999999999875
Q ss_pred c
Q 000746 829 H 829 (1303)
Q Consensus 829 ~ 829 (1303)
+
T Consensus 231 ~ 231 (343)
T TIGR02314 231 H 231 (343)
T ss_pred C
Confidence 4
No 128
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.96 E-value=5e-28 Score=263.56 Aligned_cols=168 Identities=26% Similarity=0.488 Sum_probs=137.5
Q ss_pred CCCcEEEEeeEEEeCCC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcC
Q 000746 637 ELPAVSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRG 703 (1303)
Q Consensus 637 ~~~~i~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~ 703 (1303)
+.+.++++|++++|+.. .++++|+||+|++|++++|+|+||||||||+++|+|+++|.+|.+.. .++
T Consensus 3 ~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (207)
T cd03369 3 EHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82 (207)
T ss_pred CCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHh
Confidence 34569999999999753 47999999999999999999999999999999999999999875322 134
Q ss_pred eEEEEccCcccccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH--
Q 000746 704 TVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN-- 781 (1303)
Q Consensus 704 ~iayv~Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~-- 781 (1303)
.|+|++|+|.++++|++||+.+..++++++..+.++ ++++...||||||||++||||++.
T Consensus 83 ~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~p 144 (207)
T cd03369 83 SLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKRP 144 (207)
T ss_pred hEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhCC
Confidence 699999999999999999998765444433222221 345678899999999999999642
Q ss_pred ---------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEecC
Q 000746 782 ---------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGS 822 (1303)
Q Consensus 782 ---------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~ 822 (1303)
+.+++..+++|+|++||+++.+..+|++++|++|++.+.|+
T Consensus 145 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 145 RVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 23444446899999999999988899999999999998875
No 129
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2.7e-28 Score=271.20 Aligned_cols=177 Identities=27% Similarity=0.429 Sum_probs=136.9
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE---------------EcCeE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV---------------IRGTV 705 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~---------------~~~~i 705 (1303)
++++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .+..|
T Consensus 1 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i 79 (235)
T cd03261 1 IELRGLTKSFGG-RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRM 79 (235)
T ss_pred CeEEEEEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcce
Confidence 468999999964 46999999999999999999999999999999999999999874321 12459
Q ss_pred EEEccCcccccc-cHHHHHccCCC----CChhh----HHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHH
Q 000746 706 AYVPQISWIFNA-TLRKNILFGSE----FDPAK----YWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMA 776 (1303)
Q Consensus 706 ayv~Q~p~l~~~-TireNI~~g~~----~~~~~----~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLA 776 (1303)
+|++|++.++.. |++||+.++.. .++++ ..++++..++.+ .......+||||||||++||
T Consensus 80 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrv~ia 148 (235)
T cd03261 80 GMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRG-----------AEDLYPAELSGGMKKRVALA 148 (235)
T ss_pred EEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHHHHHHHHHH
Confidence 999999999875 99999987632 22222 223333333322 12334467999999999999
Q ss_pred HHHHH-----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 777 RAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 777 RAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
||+.. +.+++.. .++|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 149 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (235)
T cd03261 149 RALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227 (235)
T ss_pred HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCC
Confidence 99542 2344433 3789999999999865 5999999999999999999887643
No 130
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=3.6e-28 Score=282.42 Aligned_cols=179 Identities=27% Similarity=0.373 Sum_probs=142.4
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-----------cCeEEE
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-----------RGTVAY 707 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~-----------~~~iay 707 (1303)
+.++++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+.+|++|. +.+ ++.|+|
T Consensus 5 ~~l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~-I~~~g~~i~~~~~~~r~ig~ 82 (351)
T PRK11432 5 NFVVLKNITKRFGS-NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQ-IFIDGEDVTHRSIQQRDICM 82 (351)
T ss_pred cEEEEEeEEEEECC-eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceE-EEECCEECCCCCHHHCCEEE
Confidence 46899999999974 46899999999999999999999999999999999999999974 332 357999
Q ss_pred EccCccccc-ccHHHHHccCCC---CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHH
Q 000746 708 VPQISWIFN-ATLRKNILFGSE---FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAV 779 (1303)
Q Consensus 708 v~Q~p~l~~-~TireNI~~g~~---~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl 779 (1303)
|+|++.+|. .|++|||.|+.. .++ ++..++++..++.+. .......||||||||++||||+
T Consensus 83 vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~-----------~~r~~~~LSgGq~QRVaLARaL 151 (351)
T PRK11432 83 VFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGF-----------EDRYVDQISGGQQQRVALARAL 151 (351)
T ss_pred EeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHHHHHHH
Confidence 999999995 699999998743 222 233334444444322 2234568999999999999996
Q ss_pred HH-----------------------HHHhHhcC--CCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHhcc
Q 000746 780 FN-----------------------SCIKEELR--GKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 780 ~~-----------------------~~i~~~~~--~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~~~ 830 (1303)
.. +.+++..+ ++|+|+|||+.+.+ ..||+|++|++|++++.|+++++..+.
T Consensus 152 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p 228 (351)
T PRK11432 152 ILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQP 228 (351)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 42 23333332 79999999999985 669999999999999999999987653
No 131
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=4.1e-28 Score=275.69 Aligned_cols=180 Identities=26% Similarity=0.396 Sum_probs=143.2
Q ss_pred cEEEEeeEEEeCCC--CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcCeE
Q 000746 640 AVSIKNGNFSWDSK--SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRGTV 705 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~--~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~~i 705 (1303)
.++++|++++|++. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|.+|.+.. .++.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999742 35999999999999999999999999999999999999999874321 12469
Q ss_pred EEEccCcc--cccccHHHHHccCCC---CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHH
Q 000746 706 AYVPQISW--IFNATLRKNILFGSE---FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMA 776 (1303)
Q Consensus 706 ayv~Q~p~--l~~~TireNI~~g~~---~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLA 776 (1303)
+|++|+|. ++..||+|||.++.. .++ ++..++++..++.+..+ ....+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKE-----------REPARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhh-----------CCcccCCHHHHHHHHHH
Confidence 99999984 567899999998742 232 33455556555554333 33468999999999999
Q ss_pred HHHHH-----------------------HHHhHhc--CCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcc
Q 000746 777 RAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 777 RAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~ 830 (1303)
||+.. +.+.+.. .|+|+|++||+++.+..||+|++|++|++++.|+++++....
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~ 231 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRG 231 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcCh
Confidence 99642 2344433 389999999999998889999999999999999999886553
No 132
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.95 E-value=7e-28 Score=281.68 Aligned_cols=179 Identities=27% Similarity=0.409 Sum_probs=143.4
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-----------cCeEEE
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-----------RGTVAY 707 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~-----------~~~iay 707 (1303)
+.++++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+.+|++|.+ .+ ++.|+|
T Consensus 13 ~~L~l~~l~~~~~~-~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I-~~~g~~i~~~~~~~r~ig~ 90 (375)
T PRK09452 13 PLVELRGISKSFDG-KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI-MLDGQDITHVPAENRHVNT 90 (375)
T ss_pred ceEEEEEEEEEECC-eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE-EECCEECCCCCHHHCCEEE
Confidence 46899999999974 468999999999999999999999999999999999999998743 32 246999
Q ss_pred EccCcccc-cccHHHHHccCCC---CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHH
Q 000746 708 VPQISWIF-NATLRKNILFGSE---FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAV 779 (1303)
Q Consensus 708 v~Q~p~l~-~~TireNI~~g~~---~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl 779 (1303)
|+|++.+| +.||+|||.|+.. .++ ++..++++..++.+..+. ...+||||||||++||||+
T Consensus 91 vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~p~~LSgGq~QRVaLARaL 159 (375)
T PRK09452 91 VFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQR-----------KPHQLSGGQQQRVAIARAV 159 (375)
T ss_pred EecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHHHHHHHH
Confidence 99999999 5599999998743 222 233445555555444333 3357999999999999996
Q ss_pred HH-----------------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHhcc
Q 000746 780 FN-----------------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 780 ~~-----------------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~~~ 830 (1303)
.. +.+++.. .+.|+|+|||+.+.+ ..||+|++|++|+|++.|+++++..+.
T Consensus 160 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p 236 (375)
T PRK09452 160 VNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP 236 (375)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 42 2333333 379999999999874 579999999999999999999997654
No 133
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=4.5e-28 Score=274.65 Aligned_cols=177 Identities=25% Similarity=0.406 Sum_probs=140.6
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcCeEEE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRGTVAY 707 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~~iay 707 (1303)
.++++|+++.|+.+.++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|.+.. .++.|+|
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 83 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGL 83 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEE
Confidence 5899999999975457999999999999999999999999999999999999999874321 1246999
Q ss_pred EccCc--ccccccHHHHHccCCC---CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHH
Q 000746 708 VPQIS--WIFNATLRKNILFGSE---FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA 778 (1303)
Q Consensus 708 v~Q~p--~l~~~TireNI~~g~~---~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARA 778 (1303)
++|+| .++..|++||+.|+.. .+. +++.++++.+++.+..+.. ...||||||||++||||
T Consensus 84 v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~LSgG~~qrv~lara 152 (274)
T PRK13647 84 VFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKP-----------PYHLSYGQKKRVAIAGV 152 (274)
T ss_pred EecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCC-----------hhhCCHHHHHHHHHHHH
Confidence 99998 5788999999998632 222 3445555555555433332 34799999999999999
Q ss_pred HHH-----------------------HHHhHhc-CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHH
Q 000746 779 VFN-----------------------SCIKEEL-RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELS 827 (1303)
Q Consensus 779 l~~-----------------------~~i~~~~-~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~ 827 (1303)
+.. +.+.+.. +++|+|++||+++.+ +.||+|++|++|++++.|+++++.
T Consensus 153 L~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 153 LAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 642 2343332 479999999999987 569999999999999999987543
No 134
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.95 E-value=1e-27 Score=265.06 Aligned_cols=180 Identities=24% Similarity=0.420 Sum_probs=148.8
Q ss_pred CCcEEEEeeEEEeCCC--CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcC
Q 000746 638 LPAVSIKNGNFSWDSK--SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRG 703 (1303)
Q Consensus 638 ~~~i~~~~~~f~~~~~--~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~ 703 (1303)
.+.++++|++++|++. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+.. .++
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 3579999999999753 36999999999999999999999999999999999999999975321 124
Q ss_pred eEEEEccCcccccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-
Q 000746 704 TVAYVPQISWIFNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN- 781 (1303)
Q Consensus 704 ~iayv~Q~p~l~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~- 781 (1303)
.++|++|++.+++.|++||+.++.. ...+++.+..+...+.+.++.+|.|.++.+.++..+||||||||++||||++.
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~ 168 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRN 168 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 6999999999999999999998653 22233344444455677888898888888899999999999999999999542
Q ss_pred ----------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEE
Q 000746 782 ----------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMI 817 (1303)
Q Consensus 782 ----------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i 817 (1303)
+.+.+..+++|+|++||+++.+..||+|++|++|++
T Consensus 169 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 169 PQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 334444457899999999999888999999999974
No 135
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=9.1e-28 Score=273.81 Aligned_cols=181 Identities=29% Similarity=0.443 Sum_probs=141.3
Q ss_pred cEEEEeeEEEeCCC----CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE--------------E
Q 000746 640 AVSIKNGNFSWDSK----SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV--------------I 701 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~----~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~--------------~ 701 (1303)
.++++|+++.|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|.+|.+.. .
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 37899999999742 36999999999999999999999999999999999999999874321 1
Q ss_pred cCeEEEEccCc--ccccccHHHHHccCCC---CChh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHH
Q 000746 702 RGTVAYVPQIS--WIFNATLRKNILFGSE---FDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQR 772 (1303)
Q Consensus 702 ~~~iayv~Q~p--~l~~~TireNI~~g~~---~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQR 772 (1303)
+.+|+|++|+| .+++.|++|||.++.. .+++ +..++++.++|. +.+........||||||||
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qr 152 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRR 152 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHH
Confidence 24699999998 5788999999998642 3332 233344444432 0122345567899999999
Q ss_pred HHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHH
Q 000746 773 VSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEEL 826 (1303)
Q Consensus 773 iaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l 826 (1303)
++||||+.. +.+.+.. .++|+|++||+++.+ ..||+|++|++|++++.|+++++
T Consensus 153 v~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~ 232 (287)
T PRK13637 153 VAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREV 232 (287)
T ss_pred HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999642 2344433 379999999999987 56999999999999999999988
Q ss_pred Hhc
Q 000746 827 SKH 829 (1303)
Q Consensus 827 ~~~ 829 (1303)
.+.
T Consensus 233 ~~~ 235 (287)
T PRK13637 233 FKE 235 (287)
T ss_pred HhC
Confidence 654
No 136
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.95 E-value=9e-27 Score=280.08 Aligned_cols=182 Identities=24% Similarity=0.387 Sum_probs=132.6
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcC-eEEEEccCcccccc-
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG-TVAYVPQISWIFNA- 717 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~-~iayv~Q~p~l~~~- 717 (1303)
.|.++|++++|+ .+++++|+|+++.+|++++|||+||+|||||+++|.|+..|++|.+....+ +++|++|++...+.
T Consensus 3 ~i~~~~ls~~~g-~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~ 81 (530)
T COG0488 3 MITLENLSLAYG-DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEK 81 (530)
T ss_pred eEEEeeeEEeeC-CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCc
Confidence 488999999995 457999999999999999999999999999999999999999975443333 79999999999854
Q ss_pred cHHHHHccCCCC-C--hhhHHHHHH------------------H-------HhhHHHhhcCCCCCCccccCCCCCCchHH
Q 000746 718 TLRKNILFGSEF-D--PAKYWKTVD------------------V-------SALQHDLDLLPDRDLTEIGERGVNISGGQ 769 (1303)
Q Consensus 718 TireNI~~g~~~-~--~~~~~~vl~------------------~-------~~l~~~i~~lp~g~~T~ige~G~~LSGGQ 769 (1303)
|++|.+..+... . ..+++++.. . ......+..|.-.. . ...-.+|||||
T Consensus 82 tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~--~-~~~~~~LSGG~ 158 (530)
T COG0488 82 TVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPD--E-DRPVSSLSGGW 158 (530)
T ss_pred cHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCc--c-cCchhhcCHHH
Confidence 999999987531 0 111221111 0 11112222222111 1 22335799999
Q ss_pred HHHHHHHHHHHHH-------------------HHhHh---cCCCEEEEEecCCCcccc-cCEEEEEeCCEEE-EecCHHH
Q 000746 770 KQRVSMARAVFNS-------------------CIKEE---LRGKTRILVTNQLHFLPH-VDRIILVSEGMIK-EEGSFEE 825 (1303)
Q Consensus 770 kQRiaLARAl~~~-------------------~i~~~---~~~~TvilvtH~~~~l~~-aD~ii~l~~G~i~-~~g~~~~ 825 (1303)
|.|++||||++.+ -+.+. .+| |+|+|||+.+++.. |++|+.+++|++. ..|.|+.
T Consensus 159 r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~~ 237 (530)
T COG0488 159 RRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPG-TVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSS 237 (530)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHhhheEEecCCceeEecCCHHH
Confidence 9999999997642 12232 356 99999999999976 8999999999776 3455554
Q ss_pred H
Q 000746 826 L 826 (1303)
Q Consensus 826 l 826 (1303)
.
T Consensus 238 ~ 238 (530)
T COG0488 238 Y 238 (530)
T ss_pred H
Confidence 4
No 137
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.1e-27 Score=273.14 Aligned_cols=179 Identities=25% Similarity=0.414 Sum_probs=140.1
Q ss_pred EEEEeeEEEeCCCC----CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----------------
Q 000746 641 VSIKNGNFSWDSKS----PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV---------------- 700 (1303)
Q Consensus 641 i~~~~~~f~~~~~~----~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~---------------- 700 (1303)
++++|++|+|+.+. ++|+|+||+|++||+++|+||||||||||+++|.|+++|++|.+..
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997432 5999999999999999999999999999999999999999874321
Q ss_pred EcCeEEEEccCc--ccccccHHHHHccCCC---CChh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHH
Q 000746 701 IRGTVAYVPQIS--WIFNATLRKNILFGSE---FDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQ 771 (1303)
Q Consensus 701 ~~~~iayv~Q~p--~l~~~TireNI~~g~~---~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQ 771 (1303)
.+..++|++|+| .+|+.|+.||+.|+.. .+++ ++.++++..++.++ .......+|||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~----------~~~~~~~~LSgGqkq 151 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADE----------FWEKSPFELSGGQMR 151 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChh----------hccCCcccCCHHHHH
Confidence 123599999998 7889999999998742 2222 23333443343221 123456789999999
Q ss_pred HHHHHHHHHH-----------------------HHHhHhc-CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHH
Q 000746 772 RVSMARAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEEL 826 (1303)
Q Consensus 772 RiaLARAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l 826 (1303)
|++||||+.. +.+.+.. +++|+|++||+++.+ ..||+|++|++|+++++|+++++
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~ 231 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999642 2333322 489999999999987 56999999999999999999998
Q ss_pred Hhc
Q 000746 827 SKH 829 (1303)
Q Consensus 827 ~~~ 829 (1303)
..+
T Consensus 232 ~~~ 234 (288)
T PRK13643 232 FQE 234 (288)
T ss_pred HcC
Confidence 654
No 138
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.95 E-value=2.2e-26 Score=290.54 Aligned_cols=182 Identities=21% Similarity=0.293 Sum_probs=125.6
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcC--eEEEEccCccc-cc
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG--TVAYVPQISWI-FN 716 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~--~iayv~Q~p~l-~~ 716 (1303)
.++++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|. +.+.+ .++|++|++.. ..
T Consensus 3 ~l~i~~ls~~~~~-~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~-I~~~~~~~~~~l~q~~~~~~~ 80 (635)
T PRK11147 3 LISIHGAWLSFSD-APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGR-IIYEQDLIVARLQQDPPRNVE 80 (635)
T ss_pred EEEEeeEEEEeCC-ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeE-EEeCCCCEEEEeccCCCCCCC
Confidence 4789999999975 46999999999999999999999999999999999999998874 44544 47899998743 24
Q ss_pred ccHHHHHccCCC-------------------CChhhHHH---H---HH-------HHhhHHHhhcCCCCCCccccCCCCC
Q 000746 717 ATLRKNILFGSE-------------------FDPAKYWK---T---VD-------VSALQHDLDLLPDRDLTEIGERGVN 764 (1303)
Q Consensus 717 ~TireNI~~g~~-------------------~~~~~~~~---v---l~-------~~~l~~~i~~lp~g~~T~ige~G~~ 764 (1303)
+++.+++..+.. ..++.+.. + ++ .....+.++.+. .. .......
T Consensus 81 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg--l~--~~~~~~~ 156 (635)
T PRK11147 81 GTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLG--LD--PDAALSS 156 (635)
T ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCC--CC--CCCchhh
Confidence 678777643210 00000000 0 00 001111222221 11 1233467
Q ss_pred CchHHHHHHHHHHHHHHH-------------------HHhHhcC--CCEEEEEecCCCccc-ccCEEEEEeCCEEEE-ec
Q 000746 765 ISGGQKQRVSMARAVFNS-------------------CIKEELR--GKTRILVTNQLHFLP-HVDRIILVSEGMIKE-EG 821 (1303)
Q Consensus 765 LSGGQkQRiaLARAl~~~-------------------~i~~~~~--~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~-~g 821 (1303)
|||||||||+||||++.+ .+.+.++ +.|+|+|||+..++. .||+|++|++|+++. .|
T Consensus 157 LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~~g 236 (635)
T PRK11147 157 LSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPG 236 (635)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEecC
Confidence 999999999999996431 1222221 369999999999986 499999999999974 47
Q ss_pred CHHHHH
Q 000746 822 SFEELS 827 (1303)
Q Consensus 822 ~~~~l~ 827 (1303)
++++..
T Consensus 237 ~~~~~~ 242 (635)
T PRK11147 237 NYDQYL 242 (635)
T ss_pred CHHHHH
Confidence 776543
No 139
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.95 E-value=6.6e-28 Score=266.66 Aligned_cols=175 Identities=26% Similarity=0.394 Sum_probs=135.1
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCC-----CCCCCceEE--------------E
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGEL-----PPLKDASVV--------------I 701 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~-----~~~~g~~~~--------------~ 701 (1303)
++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|++ +|.+|.+.. .
T Consensus 1 i~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (227)
T cd03260 1 IELRDLNVYYGD-KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLEL 79 (227)
T ss_pred CEEEEEEEEcCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHH
Confidence 468999999975 47999999999999999999999999999999999999 888874321 1
Q ss_pred cCeEEEEccCcccccccHHHHHccCCCC----C----hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHH
Q 000746 702 RGTVAYVPQISWIFNATLRKNILFGSEF----D----PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRV 773 (1303)
Q Consensus 702 ~~~iayv~Q~p~l~~~TireNI~~g~~~----~----~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRi 773 (1303)
++.++|++|++.+++.|++||+.++... + +++..++++..++.+.....++ +.+||||||||+
T Consensus 80 ~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~qrv 150 (227)
T cd03260 80 RRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQRL 150 (227)
T ss_pred HhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHHHH
Confidence 2369999999999988999999875321 1 1233444444444332222110 478999999999
Q ss_pred HHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHH
Q 000746 774 SMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEE 825 (1303)
Q Consensus 774 aLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~ 825 (1303)
+||||+.. +.+.+..+++|+|++||+++.+. .||++++|++|++++.|++++
T Consensus 151 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 151 CLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 99999642 23444434489999999999865 699999999999999998765
No 140
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.1e-27 Score=274.35 Aligned_cols=180 Identities=28% Similarity=0.429 Sum_probs=140.2
Q ss_pred EEEEeeEEEeCCCC----CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----------------
Q 000746 641 VSIKNGNFSWDSKS----PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV---------------- 700 (1303)
Q Consensus 641 i~~~~~~f~~~~~~----~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~---------------- 700 (1303)
|+++|++++|++.. ++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|.+..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 78999999997532 5999999999999999999999999999999999999999875322
Q ss_pred --------------------EcCeEEEEccCc--ccccccHHHHHccCCC---CChhh----HHHHHHHHhhHHHhhcCC
Q 000746 701 --------------------IRGTVAYVPQIS--WIFNATLRKNILFGSE---FDPAK----YWKTVDVSALQHDLDLLP 751 (1303)
Q Consensus 701 --------------------~~~~iayv~Q~p--~l~~~TireNI~~g~~---~~~~~----~~~vl~~~~l~~~i~~lp 751 (1303)
.++.|+||+|+| .++..|++|||.|+.. .++++ ..++++.++|.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----- 157 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDES----- 157 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChh-----
Confidence 123589999986 5788899999998742 33322 3333443333211
Q ss_pred CCCCccccCCCCCCchHHHHHHHHHHHHHH-----------------------HHHhHhc-CCCEEEEEecCCCcc-ccc
Q 000746 752 DRDLTEIGERGVNISGGQKQRVSMARAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFL-PHV 806 (1303)
Q Consensus 752 ~g~~T~ige~G~~LSGGQkQRiaLARAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l-~~a 806 (1303)
.......+||||||||++||||+.. +.+++.. .++|+|+|||+++.+ ..|
T Consensus 158 -----~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~a 232 (305)
T PRK13651 158 -----YLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWT 232 (305)
T ss_pred -----hhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhC
Confidence 1234567899999999999999642 2333332 489999999999875 679
Q ss_pred CEEEEEeCCEEEEecCHHHHHhcc
Q 000746 807 DRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 807 D~ii~l~~G~i~~~g~~~~l~~~~ 830 (1303)
|+|++|++|++++.|+++++.++.
T Consensus 233 drv~vl~~G~i~~~g~~~~~~~~~ 256 (305)
T PRK13651 233 KRTIFFKDGKIIKDGDTYDILSDN 256 (305)
T ss_pred CEEEEEECCEEEEECCHHHHhcCH
Confidence 999999999999999999986543
No 141
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.95 E-value=6.4e-28 Score=280.88 Aligned_cols=178 Identities=28% Similarity=0.402 Sum_probs=141.6
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-----------cCeEEEE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-----------RGTVAYV 708 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~-----------~~~iayv 708 (1303)
.++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+.+|++|. +.+ ++.|+||
T Consensus 4 ~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~-I~i~g~~~~~~~~~~r~ig~v 81 (353)
T TIGR03265 4 YLSIDNIRKRFGA-FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGT-IYQGGRDITRLPPQKRDYGIV 81 (353)
T ss_pred EEEEEEEEEEeCC-eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceE-EEECCEECCCCCHHHCCEEEE
Confidence 5899999999975 46899999999999999999999999999999999999999874 333 2469999
Q ss_pred ccCcccc-cccHHHHHccCCC---CChh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH
Q 000746 709 PQISWIF-NATLRKNILFGSE---FDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF 780 (1303)
Q Consensus 709 ~Q~p~l~-~~TireNI~~g~~---~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~ 780 (1303)
+|++.+| +.|++|||.|+.. .+.+ +..++++..+|.+ .......+||||||||++||||+.
T Consensus 82 ~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~-----------~~~~~~~~LSgGq~QRvaLARaL~ 150 (353)
T TIGR03265 82 FQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPG-----------SERKYPGQLSGGQQQRVALARALA 150 (353)
T ss_pred eCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCc-----------hhhCChhhCCHHHHHHHHHHHHHh
Confidence 9999999 5799999998742 2222 2333333333322 233456789999999999999964
Q ss_pred H-----------------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHhcc
Q 000746 781 N-----------------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 781 ~-----------------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~~~ 830 (1303)
. +.+++.. .+.|+|+|||+.+.+ ..||+|++|++|++++.|+++++.++.
T Consensus 151 ~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p 226 (353)
T TIGR03265 151 TSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP 226 (353)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 2 2233332 278999999999985 569999999999999999999998653
No 142
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=9.3e-28 Score=268.52 Aligned_cols=180 Identities=23% Similarity=0.329 Sum_probs=142.7
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCC---CCCCceEEE-------------cC
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP---PLKDASVVI-------------RG 703 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~---~~~g~~~~~-------------~~ 703 (1303)
.++++|+++.|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++ |.+|. +.+ ++
T Consensus 2 ~~~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~-i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYGK-KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGL-VEIEGKDVKNQDVVALRK 79 (246)
T ss_pred ceeeeeeEEEECC-EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceE-EEECCEecccCCHHHHhh
Confidence 4789999999974 479999999999999999999999999999999999974 57764 332 34
Q ss_pred eEEEEccCcccccccHHHHHccCCCC---------ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHH
Q 000746 704 TVAYVPQISWIFNATLRKNILFGSEF---------DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVS 774 (1303)
Q Consensus 704 ~iayv~Q~p~l~~~TireNI~~g~~~---------~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRia 774 (1303)
.++|++|+|.+|+.|++||+.++... ++++..+.++.+++.+.+. +...+++.+||||||||++
T Consensus 80 ~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~qrv~ 152 (246)
T PRK14269 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVK-------DKLKQNALALSGGQQQRLC 152 (246)
T ss_pred hEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhh-------HHhcCCcccCCHHHHHHHH
Confidence 69999999999999999999876321 1123444555555543332 1234567889999999999
Q ss_pred HHHHHH-----------------------HHHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHh
Q 000746 775 MARAVF-----------------------NSCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 775 LARAl~-----------------------~~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
||||++ .+.+.+..+++|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 153 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 230 (246)
T PRK14269 153 IARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230 (246)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHh
Confidence 999954 234445446899999999999865 699999999999999999998864
No 143
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.5e-27 Score=272.33 Aligned_cols=180 Identities=28% Similarity=0.460 Sum_probs=140.6
Q ss_pred EEEEeeEEEeCCC----CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----E-----------
Q 000746 641 VSIKNGNFSWDSK----SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----I----------- 701 (1303)
Q Consensus 641 i~~~~~~f~~~~~----~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----~----------- 701 (1303)
++++|++++|++. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+.. +
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 7899999999742 36999999999999999999999999999999999999999874321 1
Q ss_pred -cCeEEEEccCc--ccccccHHHHHccCCC---CChh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHH
Q 000746 702 -RGTVAYVPQIS--WIFNATLRKNILFGSE---FDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQ 771 (1303)
Q Consensus 702 -~~~iayv~Q~p--~l~~~TireNI~~g~~---~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQ 771 (1303)
++.|+||+|+| .+++.|++|||.|+.. .+++ +..++++.++|.+++ ......+|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEEL----------LARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhh----------hhCCcccCCHHHHH
Confidence 23599999998 6888999999998632 2322 334444444443221 12345689999999
Q ss_pred HHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHH
Q 000746 772 RVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEE 825 (1303)
Q Consensus 772 RiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~ 825 (1303)
|++||||+.. +.+.+.. .+.|+|++||+++.+ ..||+|++|++|++++.|++++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999642 2333332 378999999999986 4699999999999999999998
Q ss_pred HHhcc
Q 000746 826 LSKHG 830 (1303)
Q Consensus 826 l~~~~ 830 (1303)
+.+..
T Consensus 233 ~~~~~ 237 (290)
T PRK13634 233 IFADP 237 (290)
T ss_pred HhcCH
Confidence 86543
No 144
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.9e-27 Score=269.97 Aligned_cols=182 Identities=28% Similarity=0.421 Sum_probs=144.6
Q ss_pred cEEEEeeEEEeCC-CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcCeEE
Q 000746 640 AVSIKNGNFSWDS-KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRGTVA 706 (1303)
Q Consensus 640 ~i~~~~~~f~~~~-~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~~ia 706 (1303)
.++++|+++.|+. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+.. .++.|+
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 5899999999974 346999999999999999999999999999999999999999874321 123699
Q ss_pred EEccCc--ccccccHHHHHccCCC---CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHH
Q 000746 707 YVPQIS--WIFNATLRKNILFGSE---FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMAR 777 (1303)
Q Consensus 707 yv~Q~p--~l~~~TireNI~~g~~---~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLAR 777 (1303)
|++|+| .+++.|++|||.++.. .++ ++..++++.++|.+.++.. ...||||||||++|||
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LS~G~~qrv~lar 153 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNRE-----------PHRLSGGQKQRVAIAG 153 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCC-----------cccCCHHHHHHHHHHH
Confidence 999998 4668899999998632 222 2345555555665444433 3579999999999999
Q ss_pred HHHH-----------------------HHHhHhcC--CCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchH
Q 000746 778 AVFN-----------------------SCIKEELR--GKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRL 832 (1303)
Q Consensus 778 Al~~-----------------------~~i~~~~~--~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~ 832 (1303)
|+.. +.+.+..+ ++|+|++||+++.+..||+|++|++|++++.|+.+++.+....
T Consensus 154 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~ 233 (279)
T PRK13635 154 VLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKSGHM 233 (279)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcCHHH
Confidence 9642 33444332 7899999999999888999999999999999999988765443
No 145
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.5e-27 Score=269.78 Aligned_cols=180 Identities=26% Similarity=0.405 Sum_probs=142.9
Q ss_pred CcEEEEeeEEEeCCC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCC--ceEEE-------------c
Q 000746 639 PAVSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKD--ASVVI-------------R 702 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g--~~~~~-------------~ 702 (1303)
..++++|+++.|++. .++++|+||+|++||+++|+||||||||||+++|+|+++|.+| |.+.+ +
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 358999999999743 4699999999999999999999999999999999999999873 44433 2
Q ss_pred CeEEEEccCcc--cccccHHHHHccCCC---CChh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHH
Q 000746 703 GTVAYVPQISW--IFNATLRKNILFGSE---FDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRV 773 (1303)
Q Consensus 703 ~~iayv~Q~p~--l~~~TireNI~~g~~---~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRi 773 (1303)
..++|++|+|. +++.|++|||.++.. .+++ +..++++.+++.+..+ ....+||||||||+
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LS~G~~qrv 152 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYID-----------SEPANLSGGQKQRV 152 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhc-----------CCcccCCHHHHHHH
Confidence 46999999984 668899999987632 2332 3444555555544333 33468999999999
Q ss_pred HHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHh
Q 000746 774 SMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 774 aLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
+||||+.. +.+.+.. .++|+|++||+++.+..||++++|++|++++.|+++++.+
T Consensus 153 ~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 153 AIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999642 2344433 2789999999999988899999999999999999998865
Q ss_pred c
Q 000746 829 H 829 (1303)
Q Consensus 829 ~ 829 (1303)
.
T Consensus 233 ~ 233 (282)
T PRK13640 233 K 233 (282)
T ss_pred C
Confidence 4
No 146
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.7e-27 Score=263.80 Aligned_cols=179 Identities=22% Similarity=0.337 Sum_probs=141.8
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcCeEEE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRGTVAY 707 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~~iay 707 (1303)
.++++|++++|++ .++++|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..++|
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 81 (241)
T PRK14250 3 EIEFKEVSYSSFG-KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGM 81 (241)
T ss_pred eEEEEeEEEEeCC-eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEE
Confidence 4789999999964 46999999999999999999999999999999999999999874321 1346999
Q ss_pred EccCcccccccHHHHHccCCCC---ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH---
Q 000746 708 VPQISWIFNATLRKNILFGSEF---DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN--- 781 (1303)
Q Consensus 708 v~Q~p~l~~~TireNI~~g~~~---~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~--- 781 (1303)
++|++.+++.|++||+.++... ++++..+.++..++.++ .......+||||||||++||||++.
T Consensus 82 ~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LS~G~~qrl~la~al~~~p~ 151 (241)
T PRK14250 82 VFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKE----------YATRDVKNLSGGEAQRVSIARTLANNPE 151 (241)
T ss_pred EecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHH----------HhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999976432 12334444444444211 1224567899999999999999542
Q ss_pred --------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 782 --------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 782 --------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
+.+.... .++|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 152 llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (241)
T PRK14250 152 VLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN 222 (241)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence 2344432 3799999999999875 5999999999999999999988754
No 147
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=2.1e-27 Score=264.55 Aligned_cols=176 Identities=27% Similarity=0.409 Sum_probs=137.2
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----------EcCeEEEEcc
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----------IRGTVAYVPQ 710 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----------~~~~iayv~Q 710 (1303)
++++|+++.|++ .++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .++.++|++|
T Consensus 3 l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 81 (239)
T cd03296 3 IEVRNVSKRFGD-FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQ 81 (239)
T ss_pred EEEEeEEEEECC-EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEec
Confidence 789999999975 46999999999999999999999999999999999999998874321 1246999999
Q ss_pred Cccccc-ccHHHHHccCCCC-------Chh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHH
Q 000746 711 ISWIFN-ATLRKNILFGSEF-------DPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA 778 (1303)
Q Consensus 711 ~p~l~~-~TireNI~~g~~~-------~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARA 778 (1303)
+|.++. .|++||+.++... +.+ +..+.++..++. ........+||||||||++||||
T Consensus 82 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrl~la~a 150 (239)
T cd03296 82 HYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLD-----------WLADRYPAQLSGGQRQRVALARA 150 (239)
T ss_pred CCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCCh-----------hhhhcChhhCCHHHHHHHHHHHH
Confidence 999885 6999999986421 111 122233333332 22334557899999999999999
Q ss_pred HHH-----------------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHh
Q 000746 779 VFN-----------------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 779 l~~-----------------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
+.. +.+.+.. .++|+|++||+++.+ ..||+|++|++|++++.|+++++.+
T Consensus 151 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 151 LAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 542 2344432 278999999999976 4599999999999999999988764
No 148
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=1.2e-27 Score=248.54 Aligned_cols=186 Identities=28% Similarity=0.450 Sum_probs=147.6
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-------------EcCeEE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-------------IRGTVA 706 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-------------~~~~ia 706 (1303)
.++++|++..|.. .++|++|||++++||+++++|+||+|||||+++|+|..++.+|.+.. .+..|+
T Consensus 3 mL~v~~l~~~YG~-~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~ 81 (237)
T COG0410 3 MLEVENLSAGYGK-IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIA 81 (237)
T ss_pred ceeEEeEeecccc-eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeE
Confidence 4789999999975 57999999999999999999999999999999999999998874432 234699
Q ss_pred EEccCcccc-cccHHHHHccCCCCChh-hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH---
Q 000746 707 YVPQISWIF-NATLRKNILFGSEFDPA-KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN--- 781 (1303)
Q Consensus 707 yv~Q~p~l~-~~TireNI~~g~~~~~~-~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~--- 781 (1303)
||||.-.+| +.||.||+.+|....++ +..+ ..+++-.+.+|. +......++.+|||||+|-+|+|||++.
T Consensus 82 ~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~----~~~e~v~~lFP~-Lker~~~~aG~LSGGEQQMLAiaRALm~~Pk 156 (237)
T COG0410 82 YVPEGRRIFPRLTVEENLLLGAYARRDKEAQE----RDLEEVYELFPR-LKERRNQRAGTLSGGEQQMLAIARALMSRPK 156 (237)
T ss_pred eCcccccchhhCcHHHHHhhhhhccccccccc----ccHHHHHHHChh-HHHHhcCcccCCChHHHHHHHHHHHHhcCCC
Confidence 999999999 56999999988532221 1111 114445566664 3344567889999999999999999542
Q ss_pred --------------------HHHhHhcC--CCEEEEEecCCCc-ccccCEEEEEeCCEEEEecCHHHHHhcch
Q 000746 782 --------------------SCIKEELR--GKTRILVTNQLHF-LPHVDRIILVSEGMIKEEGSFEELSKHGR 831 (1303)
Q Consensus 782 --------------------~~i~~~~~--~~TvilvtH~~~~-l~~aD~ii~l~~G~i~~~g~~~~l~~~~~ 831 (1303)
+.|++..+ +.||++|-++... ++.|||.++|++|+|+.+|+.+||.++..
T Consensus 157 lLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~~ 229 (237)
T COG0410 157 LLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPD 229 (237)
T ss_pred EEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCHH
Confidence 22333332 5799999999988 67899999999999999999999987644
No 149
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.9e-27 Score=271.33 Aligned_cols=184 Identities=24% Similarity=0.381 Sum_probs=140.9
Q ss_pred cEEEEeeEEEeCCC----CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE---------------
Q 000746 640 AVSIKNGNFSWDSK----SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV--------------- 700 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~----~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~--------------- 700 (1303)
.++++|++++|++. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 37899999999642 36999999999999999999999999999999999999999874321
Q ss_pred -EcCeEEEEccCc--ccccccHHHHHccCCC---CChhhHHHHHHHHhhHHHhhcCCCCCCc-cccCCCCCCchHHHHHH
Q 000746 701 -IRGTVAYVPQIS--WIFNATLRKNILFGSE---FDPAKYWKTVDVSALQHDLDLLPDRDLT-EIGERGVNISGGQKQRV 773 (1303)
Q Consensus 701 -~~~~iayv~Q~p--~l~~~TireNI~~g~~---~~~~~~~~vl~~~~l~~~i~~lp~g~~T-~ige~G~~LSGGQkQRi 773 (1303)
.++.|+||+|+| .+|+.|+.|||.++.. .+.++..+.+ .+.++.+ |+++ .......+||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~-----~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv 154 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYA-----HRLLMDL--GFSRDVMSQSPFQMSGGQMRKI 154 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHH-----HHHHHHc--CCChhhhhCCcccCCHHHHHHH
Confidence 133699999998 5888899999998642 2333222211 1112222 3332 23356778999999999
Q ss_pred HHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHH
Q 000746 774 SMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELS 827 (1303)
Q Consensus 774 aLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~ 827 (1303)
+||||+.. +.+++.. .++|+|++||+++.+ ..||+|++|++|++++.|+++++.
T Consensus 155 ~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 155 AIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999642 2344432 479999999999986 569999999999999999999886
Q ss_pred hcc
Q 000746 828 KHG 830 (1303)
Q Consensus 828 ~~~ 830 (1303)
+..
T Consensus 235 ~~~ 237 (286)
T PRK13646 235 KDK 237 (286)
T ss_pred hCH
Confidence 543
No 150
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.95 E-value=1e-27 Score=279.49 Aligned_cols=180 Identities=21% Similarity=0.319 Sum_probs=141.9
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCC--CceEE----------EcCeEE
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLK--DASVV----------IRGTVA 706 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~--g~~~~----------~~~~ia 706 (1303)
+.++++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+.+|++ |.+.. .++.|+
T Consensus 4 ~~l~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig 82 (362)
T TIGR03258 4 GGIRIDHLRVAYGA-NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLA 82 (362)
T ss_pred eEEEEEEEEEEECC-eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEE
Confidence 46899999999975 469999999999999999999999999999999999999988 85321 124699
Q ss_pred EEccCccccc-ccHHHHHccCCC---CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHH
Q 000746 707 YVPQISWIFN-ATLRKNILFGSE---FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA 778 (1303)
Q Consensus 707 yv~Q~p~l~~-~TireNI~~g~~---~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARA 778 (1303)
||+|++.+|. .|++|||.|+.. .++ ++..++++..+|.+.. .....+||||||||++||||
T Consensus 83 ~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~-----------~~~~~~LSgGq~QRvaLARA 151 (362)
T TIGR03258 83 LLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAA-----------AHLPAQLSGGMQQRIAIARA 151 (362)
T ss_pred EEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchh-----------hCChhhCCHHHHHHHHHHHH
Confidence 9999999995 599999998642 222 2333444444443322 33446899999999999999
Q ss_pred HHH-----------------------HHHhHhcC---CCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHhcc
Q 000746 779 VFN-----------------------SCIKEELR---GKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 779 l~~-----------------------~~i~~~~~---~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~~~ 830 (1303)
+.. +.+++..+ +.|+|+|||+++.+ ..||+|++|++|++++.|+++++..+.
T Consensus 152 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~p 230 (362)
T TIGR03258 152 IAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAP 230 (362)
T ss_pred HhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 642 22333322 78999999999985 569999999999999999999998653
No 151
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2e-27 Score=267.35 Aligned_cols=182 Identities=23% Similarity=0.343 Sum_probs=141.7
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCCCceEEE------------
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP-----PLKDASVVI------------ 701 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~-----~~~g~~~~~------------ 701 (1303)
+.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|. +.+
T Consensus 5 ~~l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~-i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 5 PKMEARGLSFFYGD-FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGE-ILLDGENIYDPHVDV 82 (253)
T ss_pred cEEEEeeeEEEECC-eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceE-EEECCEEccccccCH
Confidence 56999999999974 469999999999999999999999999999999999864 46664 322
Q ss_pred ---cCeEEEEccCcccccccHHHHHccCCC---C-C----hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHH
Q 000746 702 ---RGTVAYVPQISWIFNATLRKNILFGSE---F-D----PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQK 770 (1303)
Q Consensus 702 ---~~~iayv~Q~p~l~~~TireNI~~g~~---~-~----~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQk 770 (1303)
++.++|++|++.+|+.|++||+.++.. . + +++..+.++.+++.+.+ .+.......+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEV-------KDRLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhh-------hHHhhCCcccCCHHHH
Confidence 346999999999998999999987531 1 1 12333444444443222 1234566788999999
Q ss_pred HHHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHH
Q 000746 771 QRVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEEL 826 (1303)
Q Consensus 771 QRiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l 826 (1303)
||++||||+.. +.+.+..+++|+|++||+++.+ ..||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999542 3344444578999999999987 46999999999999999999887
Q ss_pred Hhc
Q 000746 827 SKH 829 (1303)
Q Consensus 827 ~~~ 829 (1303)
.+.
T Consensus 236 ~~~ 238 (253)
T PRK14242 236 FTR 238 (253)
T ss_pred HcC
Confidence 643
No 152
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.95 E-value=1.8e-27 Score=277.10 Aligned_cols=178 Identities=29% Similarity=0.426 Sum_probs=140.2
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-----------cCeEEEE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-----------RGTVAYV 708 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~-----------~~~iayv 708 (1303)
.++++|+++.|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+ .+ ++.|+||
T Consensus 2 ~L~i~~l~~~~~~-~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I-~i~g~~i~~~~~~~r~i~~v 79 (353)
T PRK10851 2 SIEIANIKKSFGR-TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHI-RFHGTDVSRLHARDRKVGFV 79 (353)
T ss_pred EEEEEEEEEEeCC-eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEECCCCCHHHCCEEEE
Confidence 3789999999975 469999999999999999999999999999999999999998743 32 2469999
Q ss_pred ccCccccc-ccHHHHHccCCCC-------Ch----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHH
Q 000746 709 PQISWIFN-ATLRKNILFGSEF-------DP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMA 776 (1303)
Q Consensus 709 ~Q~p~l~~-~TireNI~~g~~~-------~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLA 776 (1303)
+|++.+|. .|++|||.|+... +. ++..+.++..++.+. .......||||||||++||
T Consensus 80 ~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~LSgGq~QRvalA 148 (353)
T PRK10851 80 FQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHL-----------ADRYPAQLSGGQKQRVALA 148 (353)
T ss_pred ecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHHHHHH
Confidence 99999995 6999999987431 21 122333333333222 2234568999999999999
Q ss_pred HHHHH-----------------------HHHhHhcC--CCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHhcc
Q 000746 777 RAVFN-----------------------SCIKEELR--GKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 777 RAl~~-----------------------~~i~~~~~--~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~~~ 830 (1303)
||+.. +.+.+..+ ++|+|+|||+++.+ ..||+|++|++|++++.|+++++..++
T Consensus 149 rAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~p 228 (353)
T PRK10851 149 RALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREP 228 (353)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99642 23333332 78999999999985 569999999999999999999997653
No 153
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.95 E-value=1.5e-27 Score=266.83 Aligned_cols=175 Identities=27% Similarity=0.395 Sum_probs=136.6
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE---------------EcCeE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV---------------IRGTV 705 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~---------------~~~~i 705 (1303)
++++|++++|+.+.++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..+
T Consensus 2 l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (243)
T TIGR02315 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRI 81 (243)
T ss_pred eEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhhe
Confidence 678999999973357999999999999999999999999999999999999999874321 12359
Q ss_pred EEEccCccccc-ccHHHHHccCCCC------------C---hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHH
Q 000746 706 AYVPQISWIFN-ATLRKNILFGSEF------------D---PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQ 769 (1303)
Q Consensus 706 ayv~Q~p~l~~-~TireNI~~g~~~------------~---~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQ 769 (1303)
+|++|++.++. .|++||+.++... . +++..++++.+++.+ .......+|||||
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~ 150 (243)
T TIGR02315 82 GMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLAD-----------KAYQRADQLSGGQ 150 (243)
T ss_pred EEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHh-----------hhcCCcccCCHHH
Confidence 99999999885 6999999875310 1 112333333333322 2334567899999
Q ss_pred HHHHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCH
Q 000746 770 KQRVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSF 823 (1303)
Q Consensus 770 kQRiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~ 823 (1303)
|||++||||++. +.+.+.. .++|+|++||+++.+ ..||++++|++|++++.|++
T Consensus 151 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~ 230 (243)
T TIGR02315 151 QQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAP 230 (243)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCH
Confidence 999999999542 2344433 378999999999987 46999999999999999999
Q ss_pred HHH
Q 000746 824 EEL 826 (1303)
Q Consensus 824 ~~l 826 (1303)
+++
T Consensus 231 ~~~ 233 (243)
T TIGR02315 231 SEL 233 (243)
T ss_pred HHh
Confidence 886
No 154
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.1e-27 Score=270.45 Aligned_cols=181 Identities=24% Similarity=0.421 Sum_probs=143.1
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE--------------EcCeE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV--------------IRGTV 705 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~--------------~~~~i 705 (1303)
.++++|++++|+++.++++|+||+|++||+++|+|+||||||||+++|.|+++|.+|.+.. .++.+
T Consensus 5 ~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~i 84 (283)
T PRK13636 5 ILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESV 84 (283)
T ss_pred eEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhE
Confidence 5899999999974457999999999999999999999999999999999999999874321 12459
Q ss_pred EEEccCc--ccccccHHHHHccCCC---CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHH
Q 000746 706 AYVPQIS--WIFNATLRKNILFGSE---FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMA 776 (1303)
Q Consensus 706 ayv~Q~p--~l~~~TireNI~~g~~---~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLA 776 (1303)
+|++|+| .+++.|++||+.++.. ++. ++..++++.+++.+ .......+||||||||++||
T Consensus 85 g~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-----------~~~~~~~~LS~G~~qrl~la 153 (283)
T PRK13636 85 GMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEH-----------LKDKPTHCLSFGQKKRVAIA 153 (283)
T ss_pred EEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChh-----------hhhCCcccCCHHHHHHHHHH
Confidence 9999998 5788999999987532 222 22334444444432 22345678999999999999
Q ss_pred HHHHH-----------------------HHHhHhcC--CCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHhcc
Q 000746 777 RAVFN-----------------------SCIKEELR--GKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 777 RAl~~-----------------------~~i~~~~~--~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~~~ 830 (1303)
||++. +.+.+..+ ++|+|++||+++.+. .||++++|++|++++.|+++++.+..
T Consensus 154 raL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~ 233 (283)
T PRK13636 154 GVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEK 233 (283)
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCH
Confidence 99642 23444332 799999999999986 69999999999999999999987644
Q ss_pred h
Q 000746 831 R 831 (1303)
Q Consensus 831 ~ 831 (1303)
.
T Consensus 234 ~ 234 (283)
T PRK13636 234 E 234 (283)
T ss_pred H
Confidence 3
No 155
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.5e-27 Score=266.57 Aligned_cols=182 Identities=26% Similarity=0.361 Sum_probs=141.2
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCC-----CCceEE-------------
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPL-----KDASVV------------- 700 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~-----~g~~~~------------- 700 (1303)
+.++++|+++.|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|. +|.+..
T Consensus 6 ~~l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 6 AIIETENLNLFYTD-FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred ceEEEeeeEEEeCC-ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 36899999999975 46999999999999999999999999999999999999874 563221
Q ss_pred -EcCeEEEEccCcccccccHHHHHccCCCC----Ch----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHH
Q 000746 701 -IRGTVAYVPQISWIFNATLRKNILFGSEF----DP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQ 771 (1303)
Q Consensus 701 -~~~~iayv~Q~p~l~~~TireNI~~g~~~----~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQ 771 (1303)
.++.|+|++|++.+++.|++|||.++... +. ++..++++.+++.+.+ ++. ...+..+|||||||
T Consensus 85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~----~~~~~~~LSgG~~q 157 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDK----LNTNALSLSGGQQQ 157 (254)
T ss_pred HHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHH----HhCCcccCCHHHHH
Confidence 13469999999999999999999986421 21 2233344444432211 122 23456789999999
Q ss_pred HHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHH
Q 000746 772 RVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELS 827 (1303)
Q Consensus 772 RiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~ 827 (1303)
|++||||++. +.+.+..+++|+|++||+++.+ ..||+|++|++|++++.|+++++.
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 158 RLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999642 3344444578999999999986 459999999999999999999886
Q ss_pred h
Q 000746 828 K 828 (1303)
Q Consensus 828 ~ 828 (1303)
+
T Consensus 238 ~ 238 (254)
T PRK14273 238 F 238 (254)
T ss_pred h
Confidence 4
No 156
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.9e-27 Score=279.30 Aligned_cols=177 Identities=27% Similarity=0.361 Sum_probs=141.0
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-----------cCeEEEE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-----------RGTVAYV 708 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~-----------~~~iayv 708 (1303)
.++++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|. +.+ ++.|+|+
T Consensus 3 ~l~i~~l~~~~~~-~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~-I~~~g~~i~~~~~~~~~i~~v 80 (369)
T PRK11000 3 SVTLRNVTKAYGD-VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGD-LFIGEKRMNDVPPAERGVGMV 80 (369)
T ss_pred EEEEEEEEEEeCC-eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceE-EEECCEECCCCCHhHCCEEEE
Confidence 4889999999975 46999999999999999999999999999999999999999874 333 2469999
Q ss_pred ccCccccc-ccHHHHHccCCC---CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH
Q 000746 709 PQISWIFN-ATLRKNILFGSE---FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF 780 (1303)
Q Consensus 709 ~Q~p~l~~-~TireNI~~g~~---~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~ 780 (1303)
+|++.+|. .|++|||.++.. .+. ++..++++..++.+.. .....+||||||||++||||+.
T Consensus 81 ~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-----------~~~~~~LSgGq~QRvaLAraL~ 149 (369)
T PRK11000 81 FQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLL-----------DRKPKALSGGQRQRVAIGRTLV 149 (369)
T ss_pred eCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhh-----------cCChhhCCHHHHHHHHHHHHHh
Confidence 99999985 599999998743 222 2344455555544332 2334679999999999999964
Q ss_pred H-----------------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 781 N-----------------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 781 ~-----------------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
. +.+++.. .++|+|+|||+++.+ ..||+|++|++|++++.|+++++...
T Consensus 150 ~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 150 AEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 2 2333333 278999999999876 56999999999999999999998764
No 157
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.6e-27 Score=268.48 Aligned_cols=178 Identities=31% Similarity=0.449 Sum_probs=140.1
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-------------EcCeEEE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-------------IRGTVAY 707 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-------------~~~~iay 707 (1303)
++++|++++|+++.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+.. .+..++|
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (274)
T PRK13644 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGI 81 (274)
T ss_pred EEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEE
Confidence 689999999965456999999999999999999999999999999999999999874321 1235999
Q ss_pred EccCcc--cccccHHHHHccCCC---CChh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHH
Q 000746 708 VPQISW--IFNATLRKNILFGSE---FDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA 778 (1303)
Q Consensus 708 v~Q~p~--l~~~TireNI~~g~~---~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARA 778 (1303)
++|+|. +++.|++|||.++.. .+.+ +..++++..++.+. .......||||||||++||||
T Consensus 82 v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrv~lara 150 (274)
T PRK13644 82 VFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKY-----------RHRSPKTLSGGQGQCVALAGI 150 (274)
T ss_pred EEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHH-----------hcCCcccCCHHHHHHHHHHHH
Confidence 999986 567899999988642 2222 23334444444322 233456899999999999999
Q ss_pred HHH-----------------------HHHhHhc-CCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 779 VFN-----------------------SCIKEEL-RGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 779 l~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
++. +.+++.. +++|+|++||+++.++.||+|++|++|++++.|+++++...
T Consensus 151 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 151 LTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 642 2333332 48999999999999988999999999999999999887653
No 158
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.95 E-value=2.7e-27 Score=265.06 Aligned_cols=180 Identities=27% Similarity=0.395 Sum_probs=140.0
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCC-----CCceEE--------------E
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPL-----KDASVV--------------I 701 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~-----~g~~~~--------------~ 701 (1303)
++++|++++|++ .++++|+||+|++||+++|+|+||||||||+++|+|+++|. +|.+.. .
T Consensus 2 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~ 80 (247)
T TIGR00972 2 IEIENLNLFYGE-KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVEL 80 (247)
T ss_pred EEEEEEEEEECC-eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHH
Confidence 689999999975 36999999999999999999999999999999999999987 764321 1
Q ss_pred cCeEEEEccCcccccccHHHHHccCCC----CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHH
Q 000746 702 RGTVAYVPQISWIFNATLRKNILFGSE----FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRV 773 (1303)
Q Consensus 702 ~~~iayv~Q~p~l~~~TireNI~~g~~----~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRi 773 (1303)
++.++|+||++.+++.|++||+.++.. .+. ++..++++..++.++++ ........+||||||||+
T Consensus 81 ~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~qrv 153 (247)
T TIGR00972 81 RRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQRL 153 (247)
T ss_pred HhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHHHH
Confidence 246999999999999999999987532 121 12233333334332111 223456678999999999
Q ss_pred HHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHh
Q 000746 774 SMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 774 aLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
+||||+.. +.+.+..+++|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 154 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (247)
T TIGR00972 154 CIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFT 232 (247)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999542 34444445689999999999865 699999999999999999988764
No 159
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.95 E-value=2.6e-27 Score=260.68 Aligned_cols=175 Identities=27% Similarity=0.474 Sum_probs=137.2
Q ss_pred EEEEeeEEEeCCC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-----------EcCeEEEE
Q 000746 641 VSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-----------IRGTVAYV 708 (1303)
Q Consensus 641 i~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-----------~~~~iayv 708 (1303)
++++|+++.|++. .++|+|+||++++||+++|+||||||||||+++|.|+++|++|.+.. .++.++|+
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v 80 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence 4689999999753 47999999999999999999999999999999999999999874321 12459999
Q ss_pred ccCcccc-cccHHHHHccCCC---CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH
Q 000746 709 PQISWIF-NATLRKNILFGSE---FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF 780 (1303)
Q Consensus 709 ~Q~p~l~-~~TireNI~~g~~---~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~ 780 (1303)
+|++.++ +.|++||+.++.. .++ ++.+++++..++.+.. .....+||||||||++||||+.
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al~ 149 (220)
T cd03263 81 PQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKA-----------NKRARTLSGGMKRKLSLAIALI 149 (220)
T ss_pred cCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-----------hChhhhCCHHHHHHHHHHHHHh
Confidence 9999988 6799999987431 222 2334445544443222 2334679999999999999953
Q ss_pred H-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHH
Q 000746 781 N-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEEL 826 (1303)
Q Consensus 781 ~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l 826 (1303)
. +.+.+..+++|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus 150 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 150 GGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred cCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 2 33444445689999999999875 5999999999999999988765
No 160
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.95 E-value=1.3e-27 Score=277.46 Aligned_cols=165 Identities=25% Similarity=0.356 Sum_probs=130.5
Q ss_pred CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------E----cCeEEEEccCccccc-
Q 000746 654 SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------I----RGTVAYVPQISWIFN- 716 (1303)
Q Consensus 654 ~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~----~~~iayv~Q~p~l~~- 716 (1303)
.++++|+||+|++||+++|+||||||||||+++|.|+++|++|.+.. + ++.|+||+|++++|+
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 46899999999999999999999999999999999999999875431 1 457999999999996
Q ss_pred ccHHHHHccCCCC---Ch-h---hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH--------
Q 000746 717 ATLRKNILFGSEF---DP-A---KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN-------- 781 (1303)
Q Consensus 717 ~TireNI~~g~~~---~~-~---~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~-------- 781 (1303)
.||+|||.++.++ +. + +..++++..+|+ ........+||||||||++||||+..
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~-----------~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLE-----------EYEHRYPDELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCc-----------hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 5999999987432 22 2 223333333332 23445667899999999999999542
Q ss_pred ---------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 782 ---------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 782 ---------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
+.+.+.. .++|+|+|||+++.+ +.||+|++|++|++++.|+++++.++
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 2233322 389999999999975 66999999999999999999998765
No 161
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=3.1e-27 Score=263.98 Aligned_cols=176 Identities=26% Similarity=0.426 Sum_probs=136.4
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE---------------EcCeE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV---------------IRGTV 705 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~---------------~~~~i 705 (1303)
++++|++++|+++.++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..+
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 468999999975346999999999999999999999999999999999999998874321 12359
Q ss_pred EEEccCccccc-ccHHHHHccCCC------------CCh---hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHH
Q 000746 706 AYVPQISWIFN-ATLRKNILFGSE------------FDP---AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQ 769 (1303)
Q Consensus 706 ayv~Q~p~l~~-~TireNI~~g~~------------~~~---~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQ 769 (1303)
+|+||++.+|. .|++||+.++.. .++ ++..+.++..++. ......+.+|||||
T Consensus 81 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~ 149 (241)
T cd03256 81 GMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLL-----------DKAYQRADQLSGGQ 149 (241)
T ss_pred EEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCCh-----------hhhCCCcccCCHHH
Confidence 99999998875 799999987531 011 1222223333222 22345667899999
Q ss_pred HHHHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCH
Q 000746 770 KQRVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSF 823 (1303)
Q Consensus 770 kQRiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~ 823 (1303)
|||++||||+.. +.+.+.. .++|+|++||+++.+. .||++++|++|++++.|++
T Consensus 150 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~ 229 (241)
T cd03256 150 QQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPP 229 (241)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCH
Confidence 999999999542 2344432 3799999999999987 6999999999999999999
Q ss_pred HHHH
Q 000746 824 EELS 827 (1303)
Q Consensus 824 ~~l~ 827 (1303)
+++.
T Consensus 230 ~~~~ 233 (241)
T cd03256 230 AELT 233 (241)
T ss_pred HHhh
Confidence 8863
No 162
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=3.9e-27 Score=265.59 Aligned_cols=183 Identities=25% Similarity=0.358 Sum_probs=143.0
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCCCceEE-------------
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP-----PLKDASVV------------- 700 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~-----~~~g~~~~------------- 700 (1303)
+.++++|+++.|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|.+..
T Consensus 12 ~~l~~~~l~~~~~~-~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~ 90 (260)
T PRK10744 12 SKIQVRNLNFYYGK-FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIA 90 (260)
T ss_pred ceEEEEEEEEEeCC-eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchH
Confidence 46899999999975 469999999999999999999999999999999999986 46663211
Q ss_pred -EcCeEEEEccCcccccccHHHHHccCCC----CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHH
Q 000746 701 -IRGTVAYVPQISWIFNATLRKNILFGSE----FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQ 771 (1303)
Q Consensus 701 -~~~~iayv~Q~p~l~~~TireNI~~g~~----~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQ 771 (1303)
.+++|+|++|++.++..|++||+.++.. .++ ++.+++++..++.+++ .....+...+|||||||
T Consensus 91 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~q 163 (260)
T PRK10744 91 LLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEV-------KDKLHQSGYSLSGGQQQ 163 (260)
T ss_pred HHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhh-------HHHHhcCCCCCCHHHHH
Confidence 1346999999999999999999987532 222 2333444444442222 23345677889999999
Q ss_pred HHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHH
Q 000746 772 RVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELS 827 (1303)
Q Consensus 772 RiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~ 827 (1303)
|++||||++. +.+++..+++|+|++||+++.+. .||++++|++|++++.|+.+++.
T Consensus 164 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 164 RLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred HHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999542 33444445789999999999875 69999999999999999999886
Q ss_pred hc
Q 000746 828 KH 829 (1303)
Q Consensus 828 ~~ 829 (1303)
..
T Consensus 244 ~~ 245 (260)
T PRK10744 244 TK 245 (260)
T ss_pred hC
Confidence 43
No 163
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=2.4e-27 Score=263.32 Aligned_cols=177 Identities=26% Similarity=0.459 Sum_probs=137.6
Q ss_pred EEEEeeEEEeCCC---CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----E-----------c
Q 000746 641 VSIKNGNFSWDSK---SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----I-----------R 702 (1303)
Q Consensus 641 i~~~~~~f~~~~~---~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----~-----------~ 702 (1303)
++++|++++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+.. + +
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 6899999999754 27999999999999999999999999999999999999999874321 1 3
Q ss_pred CeEEEEccCccccc-ccHHHHHccCCC---CChh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHH
Q 000746 703 GTVAYVPQISWIFN-ATLRKNILFGSE---FDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVS 774 (1303)
Q Consensus 703 ~~iayv~Q~p~l~~-~TireNI~~g~~---~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRia 774 (1303)
+.++|+||++.+|. .|++||+.++.. .+.. +..+.++..++. ........+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLE-----------DKADAYPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-----------hhhhcChhhCCHHHHHHHH
Confidence 46999999999986 699999987532 2221 223333333332 2233445789999999999
Q ss_pred HHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHh
Q 000746 775 MARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 775 LARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
||||++. +.+.+.. .++|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 9999542 3344433 3789999999999875 599999999999999999887754
No 164
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.95 E-value=3.1e-27 Score=263.02 Aligned_cols=184 Identities=21% Similarity=0.328 Sum_probs=138.0
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-------------EcCeEEE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-------------IRGTVAY 707 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-------------~~~~iay 707 (1303)
++++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|.+|.+.. .+..++|
T Consensus 1 l~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (236)
T cd03219 1 LEVRGLTKRFGG-LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGR 79 (236)
T ss_pred CeeeeeEEEECC-EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEE
Confidence 468999999974 46999999999999999999999999999999999999999874321 0235999
Q ss_pred EccCcccccc-cHHHHHccCCCCC-hhh--------HHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHH
Q 000746 708 VPQISWIFNA-TLRKNILFGSEFD-PAK--------YWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMAR 777 (1303)
Q Consensus 708 v~Q~p~l~~~-TireNI~~g~~~~-~~~--------~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLAR 777 (1303)
++|++.++.+ |++|||.++.... ... ..... .....+.++.+ |.+........+||||||||++|||
T Consensus 80 v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~ 156 (236)
T cd03219 80 TFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREA-RERAEELLERV--GLADLADRPAGELSYGQQRRLEIAR 156 (236)
T ss_pred EecccccccCCCHHHHHHHHHhhccccccccccccccHHHH-HHHHHHHHHHc--CccchhhCChhhCCHHHHHHHHHHH
Confidence 9999999875 9999998764211 000 00000 01122233333 2333445667789999999999999
Q ss_pred HHHH-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHh
Q 000746 778 AVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 778 Al~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
|+.. +.+.+.. +++|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 157 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (236)
T cd03219 157 ALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232 (236)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence 9542 2333333 5899999999999975 499999999999999999988754
No 165
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.95 E-value=2.7e-27 Score=257.36 Aligned_cols=165 Identities=28% Similarity=0.489 Sum_probs=130.9
Q ss_pred EEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE----------cCeEEEEccC
Q 000746 642 SIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI----------RGTVAYVPQI 711 (1303)
Q Consensus 642 ~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~----------~~~iayv~Q~ 711 (1303)
+++|++++|++..++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+ .+ ++.++|++|+
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~~i~~~~q~ 79 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSI-LLNGKPIKAKERRKSIGYVMQD 79 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEEhhhHHhhcceEEEecC
Confidence 367899999752479999999999999999999999999999999999999998743 32 2469999999
Q ss_pred c--ccccccHHHHHccCCCC---ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-----
Q 000746 712 S--WIFNATLRKNILFGSEF---DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN----- 781 (1303)
Q Consensus 712 p--~l~~~TireNI~~g~~~---~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~----- 781 (1303)
| .+++.|++||+.++.+. ++++..++++.+++.+..+. ....||||||||++||||+..
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~laral~~~p~ll 148 (205)
T cd03226 80 VDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKER-----------HPLSLSGGQKQRLAIAAALLSGKDLL 148 (205)
T ss_pred hhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCC-----------CchhCCHHHHHHHHHHHHHHhCCCEE
Confidence 8 46788999999986432 23456666776666544333 234799999999999999542
Q ss_pred ------------------HHHhHh-cCCCEEEEEecCCCccc-ccCEEEEEeCCEEE
Q 000746 782 ------------------SCIKEE-LRGKTRILVTNQLHFLP-HVDRIILVSEGMIK 818 (1303)
Q Consensus 782 ------------------~~i~~~-~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~ 818 (1303)
+.+++. .+++|+|++||+++.+. .||++++|++|+++
T Consensus 149 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 149 IFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 234333 25789999999999876 59999999999874
No 166
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=6.2e-27 Score=264.72 Aligned_cols=184 Identities=20% Similarity=0.267 Sum_probs=144.1
Q ss_pred CCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCCCceEE------------
Q 000746 638 LPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP-----PLKDASVV------------ 700 (1303)
Q Consensus 638 ~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~-----~~~g~~~~------------ 700 (1303)
...++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|.|+++ |++|.+..
T Consensus 18 ~~~l~~~nl~~~~~~-~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 18 EIALSTKDLHVYYGK-KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred CeEEEEeeEEEEECC-eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 346999999999964 579999999999999999999999999999999999986 46763211
Q ss_pred --EcCeEEEEccCcccccccHHHHHccCCC----CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHH
Q 000746 701 --IRGTVAYVPQISWIFNATLRKNILFGSE----FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQK 770 (1303)
Q Consensus 701 --~~~~iayv~Q~p~l~~~TireNI~~g~~----~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQk 770 (1303)
.+..|+|++|++.+|..|++|||.++.. .++ ++..++++.+++.+++ .+..+....+||||||
T Consensus 97 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~G~~ 169 (267)
T PRK14237 97 YEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQV-------KDDLHKSALTLSGGQQ 169 (267)
T ss_pred HHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchh-------hhhhcCCcccCCHHHH
Confidence 1346999999999999999999987532 121 2233444444443322 2334567789999999
Q ss_pred HHHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHH
Q 000746 771 QRVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEEL 826 (1303)
Q Consensus 771 QRiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l 826 (1303)
||++||||++. +.+.+..+++|+|++||+++.+ ..||++++|++|++++.|+++++
T Consensus 170 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14237 170 QRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNI 249 (267)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 99999999642 3344444678999999999987 56999999999999999999988
Q ss_pred Hhc
Q 000746 827 SKH 829 (1303)
Q Consensus 827 ~~~ 829 (1303)
...
T Consensus 250 ~~~ 252 (267)
T PRK14237 250 FTN 252 (267)
T ss_pred hcC
Confidence 653
No 167
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=3.3e-27 Score=275.15 Aligned_cols=178 Identities=25% Similarity=0.411 Sum_probs=139.0
Q ss_pred EEEEeeEEEeCC---CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE---------------Ec
Q 000746 641 VSIKNGNFSWDS---KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV---------------IR 702 (1303)
Q Consensus 641 i~~~~~~f~~~~---~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~---------------~~ 702 (1303)
++++|++++|+. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+.. .+
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 689999999972 247999999999999999999999999999999999999999874321 13
Q ss_pred CeEEEEccCccccc-ccHHHHHccCCC---CChhh----HHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHH
Q 000746 703 GTVAYVPQISWIFN-ATLRKNILFGSE---FDPAK----YWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVS 774 (1303)
Q Consensus 703 ~~iayv~Q~p~l~~-~TireNI~~g~~---~~~~~----~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRia 774 (1303)
++|+|++|++.++. .|++||+.++.. .++++ ..+.++..++. ........+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~-----------~~~~~~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLS-----------DKADRYPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-----------hhhhCChhhCCHHHHHHHH
Confidence 46999999999885 799999987632 22222 22233333332 2233445689999999999
Q ss_pred HHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHh
Q 000746 775 MARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 775 LARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
||||+.. +.+.+.. .++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999642 2344332 3789999999999875 599999999999999999999875
Q ss_pred c
Q 000746 829 H 829 (1303)
Q Consensus 829 ~ 829 (1303)
.
T Consensus 231 ~ 231 (343)
T PRK11153 231 H 231 (343)
T ss_pred C
Confidence 4
No 168
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=8e-27 Score=264.41 Aligned_cols=181 Identities=27% Similarity=0.410 Sum_probs=141.4
Q ss_pred CcEEEEeeEEEeCC-CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcCeE
Q 000746 639 PAVSIKNGNFSWDS-KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRGTV 705 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~-~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~~i 705 (1303)
..++++|+++.|++ +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. +++.+
T Consensus 6 ~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 6 VMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred eEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 35899999999963 457999999999999999999999999999999999999999874321 23469
Q ss_pred EEEccCcc--cccccHHHHHccCCC---CChhh----HHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHH
Q 000746 706 AYVPQISW--IFNATLRKNILFGSE---FDPAK----YWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMA 776 (1303)
Q Consensus 706 ayv~Q~p~--l~~~TireNI~~g~~---~~~~~----~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLA 776 (1303)
+|++|+|. +++.|++|||.++.. +++++ ..++++..++.+. ......+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~la 154 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDY-----------LDKEPQNLSGGQKQRVAIA 154 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------hhCCcccCCHHHHHHHHHH
Confidence 99999984 557899999987532 33332 2334444444333 2344578999999999999
Q ss_pred HHHHH-----------------------HHHhHhc-C-CCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcc
Q 000746 777 RAVFN-----------------------SCIKEEL-R-GKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 777 RAl~~-----------------------~~i~~~~-~-~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~ 830 (1303)
||++. +.+.+.. + ++|+|++||+++.+..||++++|++|++++.|+.+++.+..
T Consensus 155 ral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 233 (271)
T PRK13632 155 SVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNK 233 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcCH
Confidence 99642 2333333 2 58999999999998889999999999999999998876543
No 169
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=3e-27 Score=258.77 Aligned_cols=169 Identities=29% Similarity=0.406 Sum_probs=130.8
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----------EcCeEEEEcc
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----------IRGTVAYVPQ 710 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----------~~~~iayv~Q 710 (1303)
++++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .++.++|++|
T Consensus 1 l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q 79 (213)
T cd03259 1 LELKGLSKTYGS-VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQ 79 (213)
T ss_pred CeeeeeEEEeCC-eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcC
Confidence 468999999975 47999999999999999999999999999999999999999874321 1246999999
Q ss_pred Cccccc-ccHHHHHccCCC---CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-
Q 000746 711 ISWIFN-ATLRKNILFGSE---FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN- 781 (1303)
Q Consensus 711 ~p~l~~-~TireNI~~g~~---~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~- 781 (1303)
+|.++. .|++||+.++.. .++ ++..+.++.+++.+. ......+||||||||++||||+..
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrl~la~al~~~ 148 (213)
T cd03259 80 DYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGL-----------LNRYPHELSGGQQQRVALARALARE 148 (213)
T ss_pred chhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhh-----------hhcChhhCCHHHHHHHHHHHHHhcC
Confidence 998885 699999987532 122 223334444444332 233446899999999999999542
Q ss_pred ----------------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEec
Q 000746 782 ----------------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEG 821 (1303)
Q Consensus 782 ----------------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g 821 (1303)
+.+.+.. .++|+|++||+++.+ ..||+|++|++|++++.|
T Consensus 149 p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 149 PSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 2344432 378999999999986 459999999999998765
No 170
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=7.8e-27 Score=265.60 Aligned_cols=180 Identities=28% Similarity=0.382 Sum_probs=143.6
Q ss_pred cEEEEeeEEEeCCC-----CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-------------E
Q 000746 640 AVSIKNGNFSWDSK-----SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-------------I 701 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~-----~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-------------~ 701 (1303)
.++++|++++|++. .++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|.+.. .
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 58999999999742 36999999999999999999999999999999999999999874321 1
Q ss_pred cCeEEEEccCcc--cccccHHHHHccCCC---CC----hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHH
Q 000746 702 RGTVAYVPQISW--IFNATLRKNILFGSE---FD----PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQR 772 (1303)
Q Consensus 702 ~~~iayv~Q~p~--l~~~TireNI~~g~~---~~----~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQR 772 (1303)
++.++|++|+|. ++..|+.||+.|+.. .+ +++++++++.++|.+..+. ...+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRH-----------APHLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHHH
Confidence 346999999984 667799999998632 22 2334555555566544333 336799999999
Q ss_pred HHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHH
Q 000746 773 VSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELS 827 (1303)
Q Consensus 773 iaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~ 827 (1303)
++||||++. +.+.+.. .++|+|++||+++.+..||++++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999542 3344432 378999999999998889999999999999999999987
Q ss_pred hcc
Q 000746 828 KHG 830 (1303)
Q Consensus 828 ~~~ 830 (1303)
++.
T Consensus 233 ~~~ 235 (280)
T PRK13633 233 KEV 235 (280)
T ss_pred cCh
Confidence 653
No 171
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=3.2e-27 Score=259.74 Aligned_cols=171 Identities=26% Similarity=0.372 Sum_probs=133.8
Q ss_pred EEEEeeEEEeCCC---CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE--------cCeEEEEc
Q 000746 641 VSIKNGNFSWDSK---SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI--------RGTVAYVP 709 (1303)
Q Consensus 641 i~~~~~~f~~~~~---~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~--------~~~iayv~ 709 (1303)
++++|+++.|++. .++|+|+||+|++|++++|+||||||||||+++|+|+++|.+|. +.+ +..++|++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~i~~v~ 79 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE-VLVDGEPVTGPGPDRGYVF 79 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEECccccCcEEEEe
Confidence 4689999999752 47999999999999999999999999999999999999998874 333 34699999
Q ss_pred cCccccc-ccHHHHHccCCC---CC----hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH
Q 000746 710 QISWIFN-ATLRKNILFGSE---FD----PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN 781 (1303)
Q Consensus 710 Q~p~l~~-~TireNI~~g~~---~~----~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~ 781 (1303)
|+|.++. .|++||+.++.. .+ +++..+.++..++.+.. .....+||||||||++||||+..
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrl~la~al~~ 148 (220)
T cd03293 80 QQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFE-----------NAYPHQLSGGMRQRVALARALAV 148 (220)
T ss_pred cccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhh-----------hCCcccCCHHHHHHHHHHHHHHc
Confidence 9999886 799999987532 11 22334445544444332 23346799999999999999642
Q ss_pred -----------------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEe--CCEEEEecCH
Q 000746 782 -----------------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVS--EGMIKEEGSF 823 (1303)
Q Consensus 782 -----------------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~--~G~i~~~g~~ 823 (1303)
+.+.+.. .++|+|++||+++.+ ..||++++|+ +|+++++++.
T Consensus 149 ~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 149 DPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 3344432 378999999999976 4699999999 7999998765
No 172
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=6.6e-27 Score=264.47 Aligned_cols=183 Identities=21% Similarity=0.329 Sum_probs=142.7
Q ss_pred CCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CCCceEE------------
Q 000746 638 LPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP-----LKDASVV------------ 700 (1303)
Q Consensus 638 ~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~-----~~g~~~~------------ 700 (1303)
.+.++++|+++.|++ .++|+|+||+|++|++++|+|+||||||||+++|.|+++| ++|.+..
T Consensus 17 ~~~l~~~nl~~~~~~-~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~ 95 (267)
T PRK14235 17 EIKMRARDVSVFYGE-KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDV 95 (267)
T ss_pred CceEEEEeEEEEECC-EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccch
Confidence 457999999999974 4699999999999999999999999999999999999975 6764321
Q ss_pred --EcCeEEEEccCcccccccHHHHHccCCC---C--C----hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHH
Q 000746 701 --IRGTVAYVPQISWIFNATLRKNILFGSE---F--D----PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQ 769 (1303)
Q Consensus 701 --~~~~iayv~Q~p~l~~~TireNI~~g~~---~--~----~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQ 769 (1303)
.+..++|++|+|.+++.|++||+.++.. . + +++..++++..++.+++. +.....+.+|||||
T Consensus 96 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq 168 (267)
T PRK14235 96 VELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLSGGQ 168 (267)
T ss_pred HHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHHH
Confidence 1346999999999998899999987531 1 1 122344444444433221 23345678899999
Q ss_pred HHHHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHH
Q 000746 770 KQRVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEE 825 (1303)
Q Consensus 770 kQRiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~ 825 (1303)
|||++||||++. +.+++..+++|+|++||+++.+ ..||++++|++|++++.|++++
T Consensus 169 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 248 (267)
T PRK14235 169 QQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEK 248 (267)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 999999999642 3444444578999999999987 4589999999999999999988
Q ss_pred HHh
Q 000746 826 LSK 828 (1303)
Q Consensus 826 l~~ 828 (1303)
+..
T Consensus 249 ~~~ 251 (267)
T PRK14235 249 MFT 251 (267)
T ss_pred HHh
Confidence 764
No 173
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.95 E-value=2.4e-27 Score=260.60 Aligned_cols=166 Identities=27% Similarity=0.361 Sum_probs=128.8
Q ss_pred EEEEeeEEEeCCC---CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----------------E
Q 000746 641 VSIKNGNFSWDSK---SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----------------I 701 (1303)
Q Consensus 641 i~~~~~~f~~~~~---~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----------------~ 701 (1303)
++++|++++|++. .++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 4689999999752 47999999999999999999999999999999999999998875321 1
Q ss_pred cCeEEEEccCcccccc-cHHHHHccCCCC---Ch----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHH
Q 000746 702 RGTVAYVPQISWIFNA-TLRKNILFGSEF---DP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRV 773 (1303)
Q Consensus 702 ~~~iayv~Q~p~l~~~-TireNI~~g~~~---~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRi 773 (1303)
+..++|++|++.++.. |++||+.++..+ +. +++.++++..++ +........+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGL-----------GDRLNHYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCC-----------chhhhcChhhcCHHHHHHH
Confidence 2469999999999875 999999986432 11 223333333333 2233445578999999999
Q ss_pred HHHHHHH-----------------------HHHHhHhc--CCCEEEEEecCCCcccccCEEEEEeCCEE
Q 000746 774 SMARAVF-----------------------NSCIKEEL--RGKTRILVTNQLHFLPHVDRIILVSEGMI 817 (1303)
Q Consensus 774 aLARAl~-----------------------~~~i~~~~--~~~TvilvtH~~~~l~~aD~ii~l~~G~i 817 (1303)
+||||++ .+.+.+.. .++|+|++||+++.+..||++++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 9999953 23344443 37899999999998889999999999974
No 174
>PLN03073 ABC transporter F family; Provisional
Probab=99.95 E-value=1.7e-25 Score=281.69 Aligned_cols=181 Identities=20% Similarity=0.213 Sum_probs=118.7
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcCeEEEEccCccccccc
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWIFNAT 718 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~~iayv~Q~p~l~~~T 718 (1303)
..|+++|++++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+.. .| +.-.++|+|++|++.-.+.|
T Consensus 176 ~~I~i~nls~~y~~-~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~--~g--~p~~g~I~~~~Q~~~g~~~t 250 (718)
T PLN03073 176 KDIHMENFSISVGG-RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAI--DG--IPKNCQILHVEQEVVGDDTT 250 (718)
T ss_pred eeEEEceEEEEeCC-CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CC--CCCCCEEEEEeccCCCCCCC
Confidence 46999999999975 469999999999999999999999999999999999741 12 11235789999986433335
Q ss_pred HHHHHccCC-----------------------------------CCCh----hhHHHHHHHHhh----------HHHhhc
Q 000746 719 LRKNILFGS-----------------------------------EFDP----AKYWKTVDVSAL----------QHDLDL 749 (1303)
Q Consensus 719 ireNI~~g~-----------------------------------~~~~----~~~~~vl~~~~l----------~~~i~~ 749 (1303)
+.+.+.-.. ..++ +++.++.+..++ .+.+..
T Consensus 251 ~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~ 330 (718)
T PLN03073 251 ALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAG 330 (718)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Confidence 433321100 0011 122222222111 011111
Q ss_pred CCCCCC-ccccCCCCCCchHHHHHHHHHHHHHHH-------------------HHhHhc--CCCEEEEEecCCCcccc-c
Q 000746 750 LPDRDL-TEIGERGVNISGGQKQRVSMARAVFNS-------------------CIKEEL--RGKTRILVTNQLHFLPH-V 806 (1303)
Q Consensus 750 lp~g~~-T~ige~G~~LSGGQkQRiaLARAl~~~-------------------~i~~~~--~~~TvilvtH~~~~l~~-a 806 (1303)
+ |.. ......-.+||||||||++||||++.+ .+.+.+ -++|+|+|||+.+++.. |
T Consensus 331 l--gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~~~~ 408 (718)
T PLN03073 331 L--SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVV 408 (718)
T ss_pred C--CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhC
Confidence 1 111 111223457999999999999996531 111222 26899999999999865 9
Q ss_pred CEEEEEeCCEEE-EecCHHHH
Q 000746 807 DRIILVSEGMIK-EEGSFEEL 826 (1303)
Q Consensus 807 D~ii~l~~G~i~-~~g~~~~l 826 (1303)
|+|++|++|++. ..|++++.
T Consensus 409 d~i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 409 TDILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred CEEEEEECCEEEEeCCCHHHH
Confidence 999999999996 56777654
No 175
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.1e-26 Score=263.93 Aligned_cols=179 Identities=28% Similarity=0.421 Sum_probs=141.5
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-------------cCeEE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-------------RGTVA 706 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~-------------~~~ia 706 (1303)
.++++|++++|+++.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+ .+ ++.++
T Consensus 3 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSV-LIRGEPITKENIREVRKFVG 81 (277)
T ss_pred eEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEECCcCCHHHHHhheE
Confidence 47899999999654569999999999999999999999999999999999999998743 32 13599
Q ss_pred EEccCc--ccccccHHHHHccCC---CCChh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHH
Q 000746 707 YVPQIS--WIFNATLRKNILFGS---EFDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMAR 777 (1303)
Q Consensus 707 yv~Q~p--~l~~~TireNI~~g~---~~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLAR 777 (1303)
|++|+| .+++.|++||+.++. ..+++ ++.+.++.+++.+... .....||||||||++|||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Gq~qrl~lar 150 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRD-----------RVPHHLSGGEKKRVAIAG 150 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhc-----------CCcccCCHHHHHHHHHHH
Confidence 999998 367889999998753 23332 2344455555543332 234579999999999999
Q ss_pred HHHH-----------------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHhcc
Q 000746 778 AVFN-----------------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 778 Al~~-----------------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~~~ 830 (1303)
|+.. +.+.+.. .++|+|++||+++.+ ..||+|++|++|++++.|+++++.+..
T Consensus 151 aL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~ 229 (277)
T PRK13652 151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQP 229 (277)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcCH
Confidence 9642 2333332 278999999999997 579999999999999999999987644
No 176
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.95 E-value=7e-27 Score=261.45 Aligned_cols=174 Identities=25% Similarity=0.374 Sum_probs=138.4
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-------EcCeEEEEccC
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-------IRGTVAYVPQI 711 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-------~~~~iayv~Q~ 711 (1303)
..++++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+.. .+..++|++|+
T Consensus 11 ~~l~i~~l~~~~~~-~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~ 89 (257)
T PRK11247 11 TPLLLNAVSKRYGE-RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQD 89 (257)
T ss_pred CcEEEEEEEEEECC-cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecC
Confidence 46999999999975 47999999999999999999999999999999999999999875431 13469999999
Q ss_pred ccccc-ccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH--------
Q 000746 712 SWIFN-ATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN-------- 781 (1303)
Q Consensus 712 p~l~~-~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~-------- 781 (1303)
+.++. .|++||+.++.. ..+++..+.++..++.+. ......+||||||||++||||++.
T Consensus 90 ~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGqkqrl~laraL~~~p~lllLD 158 (257)
T PRK11247 90 ARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADR-----------ANEWPAALSGGQKQRVALARALIHRPGLLLLD 158 (257)
T ss_pred ccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhH-----------hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99886 699999987632 123344555555554332 234557899999999999999642
Q ss_pred ---------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHH
Q 000746 782 ---------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFE 824 (1303)
Q Consensus 782 ---------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~ 824 (1303)
+.+.+.. .++|+|++||+++.+ ..||+|++|++|+++++|+.+
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 159 EPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 2344432 378999999999986 469999999999999988754
No 177
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.95 E-value=8.5e-27 Score=259.21 Aligned_cols=180 Identities=18% Similarity=0.353 Sum_probs=139.3
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc------------CeEEEE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR------------GTVAYV 708 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~------------~~iayv 708 (1303)
++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+ .+. ..++|+
T Consensus 2 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i-~~~g~~i~~~~~~~~~~i~~~ 79 (236)
T TIGR03864 2 LEVAGLSFAYGA-RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQI-SVAGHDLRRAPRAALARLGVV 79 (236)
T ss_pred EEEEeeEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEE-EECCEEcccCChhhhhhEEEe
Confidence 678999999974 469999999999999999999999999999999999999998743 221 369999
Q ss_pred ccCccc-ccccHHHHHccCCC---CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH---
Q 000746 709 PQISWI-FNATLRKNILFGSE---FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN--- 781 (1303)
Q Consensus 709 ~Q~p~l-~~~TireNI~~g~~---~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~--- 781 (1303)
+|++.+ ++.|++||+.++.. .++++..+. ..+.++.+ |.+........+||||||||++||||++.
T Consensus 80 ~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~p~ 152 (236)
T TIGR03864 80 FQQPTLDLDLSVRQNLRYHAALHGLSRAEARER-----IAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHRPA 152 (236)
T ss_pred CCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 999987 47899999987532 222211111 11222222 23333456667899999999999999542
Q ss_pred --------------------HHHhHhc--CCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 782 --------------------SCIKEEL--RGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 782 --------------------~~i~~~~--~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
+.+.+.. +++|+|++||+++.+..||++++|++|++++.|+++++.++
T Consensus 153 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 153 LLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred EEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 2344443 47999999999999888999999999999999999887654
No 178
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=5.3e-27 Score=265.78 Aligned_cols=184 Identities=19% Similarity=0.257 Sum_probs=140.4
Q ss_pred CCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCCCceEE------------
Q 000746 638 LPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP-----PLKDASVV------------ 700 (1303)
Q Consensus 638 ~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~-----~~~g~~~~------------ 700 (1303)
.+.++++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|.+..
T Consensus 19 ~~~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 19 EHILEVKDLSIYYGE-KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred CceEEEEEEEEEeCC-ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 346999999999974 469999999999999999999999999999999999864 56774321
Q ss_pred --EcCeEEEEccCcccccccHHHHHccCCCCC----h----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHH
Q 000746 701 --IRGTVAYVPQISWIFNATLRKNILFGSEFD----P----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQK 770 (1303)
Q Consensus 701 --~~~~iayv~Q~p~l~~~TireNI~~g~~~~----~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQk 770 (1303)
.++.++|++|++.+|++|++||+.++.... + ++..++++.+++.+ +..........+||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWD-------EVKDRLHSSALSLSGGQQ 170 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCc-------chHHHHhcCcccCCHHHH
Confidence 134699999999999999999998753211 1 11222233322221 111234566788999999
Q ss_pred HHHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHH
Q 000746 771 QRVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEEL 826 (1303)
Q Consensus 771 QRiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l 826 (1303)
||++||||++. +.+.+..+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999542 33444445789999999999764 6999999999999999999887
Q ss_pred Hhc
Q 000746 827 SKH 829 (1303)
Q Consensus 827 ~~~ 829 (1303)
..+
T Consensus 251 ~~~ 253 (268)
T PRK14248 251 FTS 253 (268)
T ss_pred HhC
Confidence 653
No 179
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=4.3e-27 Score=275.64 Aligned_cols=181 Identities=25% Similarity=0.391 Sum_probs=141.3
Q ss_pred CCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----------EcCeEEE
Q 000746 638 LPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----------IRGTVAY 707 (1303)
Q Consensus 638 ~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----------~~~~iay 707 (1303)
...++++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|.|+.+|++|.+.. .++.|+|
T Consensus 17 ~~~l~l~~v~~~~~~-~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 95 (377)
T PRK11607 17 TPLLEIRNLTKSFDG-QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINM 95 (377)
T ss_pred CceEEEEeEEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 346999999999964 46899999999999999999999999999999999999999874321 1346999
Q ss_pred EccCccccc-ccHHHHHccCCC---CChh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHH
Q 000746 708 VPQISWIFN-ATLRKNILFGSE---FDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAV 779 (1303)
Q Consensus 708 v~Q~p~l~~-~TireNI~~g~~---~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl 779 (1303)
|+|++.+|. .|+.|||.|+.. .+.+ +..+.++..++.+. ......+|||||||||+||||+
T Consensus 96 vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~-----------~~~~~~~LSgGq~QRVaLARAL 164 (377)
T PRK11607 96 MFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEF-----------AKRKPHQLSGGQRQRVALARSL 164 (377)
T ss_pred EeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHHHHHHH
Confidence 999999995 599999998742 2222 22333333333322 2234467999999999999996
Q ss_pred HH-----------------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHhcc
Q 000746 780 FN-----------------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 780 ~~-----------------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~~~ 830 (1303)
.. +.+.+.. .+.|+|+|||+.+.+ ..||+|++|++|++++.|+++++..+.
T Consensus 165 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p 241 (377)
T PRK11607 165 AKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP 241 (377)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence 42 1223332 379999999999974 679999999999999999999998653
No 180
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=6.5e-27 Score=262.64 Aligned_cols=183 Identities=26% Similarity=0.381 Sum_probs=141.4
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCC-----CCceEE-------------
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPL-----KDASVV------------- 700 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~-----~g~~~~------------- 700 (1303)
+.++++|+++.|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|. +|.+..
T Consensus 3 ~~l~~~~l~~~~~~-~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 3 PKIKIRGVNFFYHK-HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred ceEEEEEEEEEECC-eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 35899999999974 46999999999999999999999999999999999999987 353211
Q ss_pred -EcCeEEEEccCcccccccHHHHHccCCCC----ChhhH----HHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHH
Q 000746 701 -IRGTVAYVPQISWIFNATLRKNILFGSEF----DPAKY----WKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQ 771 (1303)
Q Consensus 701 -~~~~iayv~Q~p~l~~~TireNI~~g~~~----~~~~~----~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQ 771 (1303)
.++.++|++|+|.+++.|++||+.++..+ .+++. .++++..++.+ +..+.....+.+|||||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~Gq~q 154 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWD-------EVKDNLHKSGLALSGGQQQ 154 (251)
T ss_pred HhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCch-------hhhhHhhCCcccCCHHHHH
Confidence 13569999999999999999999976421 11222 22222223222 1223355677899999999
Q ss_pred HHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCcccc-cCEEEEEeCCEEEEecCHHHHH
Q 000746 772 RVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLPH-VDRIILVSEGMIKEEGSFEELS 827 (1303)
Q Consensus 772 RiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~~-aD~ii~l~~G~i~~~g~~~~l~ 827 (1303)
|++||||++. +.+.+..+++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 155 RLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 9999999542 344444457999999999998765 7999999999999999998876
Q ss_pred hc
Q 000746 828 KH 829 (1303)
Q Consensus 828 ~~ 829 (1303)
..
T Consensus 235 ~~ 236 (251)
T PRK14249 235 SR 236 (251)
T ss_pred hC
Confidence 43
No 181
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=4.9e-27 Score=258.32 Aligned_cols=173 Identities=21% Similarity=0.318 Sum_probs=135.1
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE------------cCeEEEE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI------------RGTVAYV 708 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~------------~~~iayv 708 (1303)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+ .+ +..++|+
T Consensus 1 i~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~~~~i~~~ 78 (220)
T cd03265 1 IEVENLVKKYGD-FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRA-TVAGHDVVREPREVRRRIGIV 78 (220)
T ss_pred CEEEEEEEEECC-EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEecCcChHHHhhcEEEe
Confidence 478999999975 469999999999999999999999999999999999999998743 32 2369999
Q ss_pred ccCccccc-ccHHHHHccCCC---CC----hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH
Q 000746 709 PQISWIFN-ATLRKNILFGSE---FD----PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF 780 (1303)
Q Consensus 709 ~Q~p~l~~-~TireNI~~g~~---~~----~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~ 780 (1303)
+|++.++. .|++||+.++.. .+ +++..+.++..++.+..+ ....+||||||||++||||++
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qr~~la~al~ 147 (220)
T cd03265 79 FQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAAD-----------RLVKTYSGGMRRRLEIARSLV 147 (220)
T ss_pred cCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-----------CChhhCCHHHHHHHHHHHHHh
Confidence 99998886 599999987421 22 223444555555543222 234579999999999999954
Q ss_pred H-----------------------HHHhHhc-C-CCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHH
Q 000746 781 N-----------------------SCIKEEL-R-GKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEEL 826 (1303)
Q Consensus 781 ~-----------------------~~i~~~~-~-~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l 826 (1303)
. +.+.+.. + ++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 148 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 148 HRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred cCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 2 2333332 2 789999999999875 5999999999999999987764
No 182
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=9.5e-27 Score=261.75 Aligned_cols=182 Identities=20% Similarity=0.327 Sum_probs=139.1
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCC--C---CCCceEE--------------
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP--P---LKDASVV-------------- 700 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~--~---~~g~~~~-------------- 700 (1303)
.++++|++++|++ .++++|+||++++||+++|+||||||||||+++|.|+.+ | ++|.+..
T Consensus 5 ~l~~~~l~~~~~~-~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14239 5 ILQVSDLSVYYNK-KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVD 83 (252)
T ss_pred eEEEEeeEEEECC-eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHh
Confidence 5899999999974 469999999999999999999999999999999999853 5 3663221
Q ss_pred EcCeEEEEccCcccccccHHHHHccCCC---C-Chh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHH
Q 000746 701 IRGTVAYVPQISWIFNATLRKNILFGSE---F-DPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQR 772 (1303)
Q Consensus 701 ~~~~iayv~Q~p~l~~~TireNI~~g~~---~-~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQR 772 (1303)
.++.++|++|++.+|+.|++||+.++.. . +++ +..++++.+++.+.+ .+.......+||||||||
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14239 84 LRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEV-------KDRLHDSALGLSGGQQQR 156 (252)
T ss_pred hhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhH-------HHHHhcCcccCCHHHHHH
Confidence 1346999999999999999999987531 1 111 222233333332211 123456678899999999
Q ss_pred HHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHh
Q 000746 773 VSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 773 iaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
++||||+.. +.+.+..+++|+|++||+++.+ ..||+|++|++|++++.|+++++.+
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 236 (252)
T PRK14239 157 VCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFM 236 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999542 3344444578999999999876 4699999999999999999998865
Q ss_pred c
Q 000746 829 H 829 (1303)
Q Consensus 829 ~ 829 (1303)
.
T Consensus 237 ~ 237 (252)
T PRK14239 237 N 237 (252)
T ss_pred C
Confidence 3
No 183
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.2e-26 Score=261.72 Aligned_cols=183 Identities=23% Similarity=0.343 Sum_probs=140.7
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCC--C---CCCceEE-------------
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP--P---LKDASVV------------- 700 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~--~---~~g~~~~------------- 700 (1303)
+.++++|+++.|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|.+..
T Consensus 11 ~~l~i~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 11 EVYQINGMNLWYGQ-HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred ceEEEeeEEEEECC-eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 35899999999975 469999999999999999999999999999999999987 3 4663311
Q ss_pred -EcCeEEEEccCcccccccHHHHHccCCCC----Chhh----HHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHH
Q 000746 701 -IRGTVAYVPQISWIFNATLRKNILFGSEF----DPAK----YWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQ 771 (1303)
Q Consensus 701 -~~~~iayv~Q~p~l~~~TireNI~~g~~~----~~~~----~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQ 771 (1303)
.++.++|++|++.+++.|++||+.++... ++++ ..++++..++.+.+ .+.......+|||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEV-------KDRLHTQALSLSGGQQQ 162 (259)
T ss_pred HHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhhhhCCcccCCHHHHH
Confidence 12469999999999999999999876321 2222 22233333332221 12345567789999999
Q ss_pred HHHHHHHHH-----------------------HHHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHH
Q 000746 772 RVSMARAVF-----------------------NSCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELS 827 (1303)
Q Consensus 772 RiaLARAl~-----------------------~~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~ 827 (1303)
|++||||++ .+.+.+..+++|+|++||+++.+. .||++++|++|+++++|+++++.
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999954 234455445789999999999865 69999999999999999999876
Q ss_pred hc
Q 000746 828 KH 829 (1303)
Q Consensus 828 ~~ 829 (1303)
++
T Consensus 243 ~~ 244 (259)
T PRK14274 243 SN 244 (259)
T ss_pred hC
Confidence 43
No 184
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=6.2e-27 Score=265.45 Aligned_cols=183 Identities=23% Similarity=0.329 Sum_probs=142.5
Q ss_pred CCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CCCceEE------------
Q 000746 638 LPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP-----LKDASVV------------ 700 (1303)
Q Consensus 638 ~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~-----~~g~~~~------------ 700 (1303)
.+.++++|+++.|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|.+..
T Consensus 23 ~~~l~~~nl~~~~~~-~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~ 101 (272)
T PRK14236 23 QTALEVRNLNLFYGD-KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDV 101 (272)
T ss_pred CcEEEEEEEEEEECC-eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCH
Confidence 346999999999964 4799999999999999999999999999999999999874 6764321
Q ss_pred --EcCeEEEEccCcccccccHHHHHccCCCC----Ch----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHH
Q 000746 701 --IRGTVAYVPQISWIFNATLRKNILFGSEF----DP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQK 770 (1303)
Q Consensus 701 --~~~~iayv~Q~p~l~~~TireNI~~g~~~----~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQk 770 (1303)
.+..++|++|++.+|+.|++||+.++... .+ ++..++++..++.+++ .+..+..+.+||||||
T Consensus 102 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 174 (272)
T PRK14236 102 AELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEV-------KDRLHENAFGLSGGQQ 174 (272)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhH-------HHHhhCCcccCCHHHH
Confidence 13579999999999988999999875321 11 1233333333333222 2345667789999999
Q ss_pred HHHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHH
Q 000746 771 QRVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEEL 826 (1303)
Q Consensus 771 QRiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l 826 (1303)
||++||||++. +.+.+..+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 175 qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 254 (272)
T PRK14236 175 QRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTL 254 (272)
T ss_pred HHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHH
Confidence 99999999542 33444445789999999999864 6999999999999999999887
Q ss_pred Hh
Q 000746 827 SK 828 (1303)
Q Consensus 827 ~~ 828 (1303)
.+
T Consensus 255 ~~ 256 (272)
T PRK14236 255 FT 256 (272)
T ss_pred hc
Confidence 64
No 185
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.94 E-value=8.2e-27 Score=273.99 Aligned_cols=178 Identities=26% Similarity=0.462 Sum_probs=142.1
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcCeEEE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRGTVAY 707 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~~iay 707 (1303)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|.|+++|.+|.+.. .+++|+|
T Consensus 3 ~L~~~nls~~y~~-~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~ 81 (402)
T PRK09536 3 MIDVSDLSVEFGD-TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVAS 81 (402)
T ss_pred eEEEeeEEEEECC-EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEE
Confidence 4889999999975 47999999999999999999999999999999999999999874321 1346999
Q ss_pred EccCccc-ccccHHHHHccCCC-----C------ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHH
Q 000746 708 VPQISWI-FNATLRKNILFGSE-----F------DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSM 775 (1303)
Q Consensus 708 v~Q~p~l-~~~TireNI~~g~~-----~------~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaL 775 (1303)
++|++.+ ++.|++||+.++.. + ++++.+++++..++.+.. .....+||||||||++|
T Consensus 82 v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~-----------~~~~~~LSgGerQRv~I 150 (402)
T PRK09536 82 VPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFA-----------DRPVTSLSGGERQRVLL 150 (402)
T ss_pred EccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHH
Confidence 9999987 58899999998742 1 122344455555543322 22346799999999999
Q ss_pred HHHHHH-----------------------HHHhHhc-CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 776 ARAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 776 ARAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
|||+.+ +.+++.. +++|+|++||+++.+ +.||++++|++|++++.|+++++...
T Consensus 151 ArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~ 229 (402)
T PRK09536 151 ARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA 229 (402)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc
Confidence 999643 2333332 478999999999997 56999999999999999999998764
No 186
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=3.6e-27 Score=266.74 Aligned_cols=176 Identities=23% Similarity=0.313 Sum_probs=136.3
Q ss_pred EEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----E------------cCeE
Q 000746 642 SIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----I------------RGTV 705 (1303)
Q Consensus 642 ~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----~------------~~~i 705 (1303)
.++|+++.|++ .++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. + +.++
T Consensus 26 ~~~~~~~~~~~-~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i 104 (269)
T cd03294 26 SKEEILKKTGQ-TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKI 104 (269)
T ss_pred hhhhhhhhcCC-ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcE
Confidence 35577777754 36899999999999999999999999999999999999998874321 0 2469
Q ss_pred EEEccCcccc-cccHHHHHccCCC---CC----hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHH
Q 000746 706 AYVPQISWIF-NATLRKNILFGSE---FD----PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMAR 777 (1303)
Q Consensus 706 ayv~Q~p~l~-~~TireNI~~g~~---~~----~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLAR 777 (1303)
+|++|++.++ +.|++||+.++.. ++ +++..++++..++.+.+.. ...+||||||||++|||
T Consensus 105 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Gq~qrv~lAr 173 (269)
T cd03294 105 SMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHK-----------YPDELSGGMQQRVGLAR 173 (269)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhC-----------CcccCCHHHHHHHHHHH
Confidence 9999999988 5699999987531 22 2334455555555443333 33579999999999999
Q ss_pred HHHH-----------------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 778 AVFN-----------------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 778 Al~~-----------------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
|++. +.+.+.. .++|+|++||+++.+ ..||++++|++|++++.|+++++.+.
T Consensus 174 al~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 174 ALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 9642 2344432 379999999999986 46999999999999999999988643
No 187
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=7.2e-27 Score=262.16 Aligned_cols=183 Identities=23% Similarity=0.351 Sum_probs=140.6
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcC---CCC--CCCceEE-------------
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGE---LPP--LKDASVV------------- 700 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~---~~~--~~g~~~~------------- 700 (1303)
+.++++|+++.|++ .++|+|+||++++||+++|+|+||||||||+++|.|+ .+| ++|.+..
T Consensus 2 ~~l~~~~~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 2 VKIDARDVNFWYGD-FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred cEEEEEEEEEEECC-EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 35899999999975 4699999999999999999999999999999999996 454 3563211
Q ss_pred -EcCeEEEEccCcccccccHHHHHccCCC---C-Ch----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHH
Q 000746 701 -IRGTVAYVPQISWIFNATLRKNILFGSE---F-DP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQ 771 (1303)
Q Consensus 701 -~~~~iayv~Q~p~l~~~TireNI~~g~~---~-~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQ 771 (1303)
.++.++|+||++.+++.|++||+.++.. . ++ ++..++++.+++.+++ .+.....+.+|||||||
T Consensus 81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~q 153 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEV-------KDKLKESAFALSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcch-------hhhhhCCcccCCHHHHH
Confidence 1236999999999998999999987532 1 11 2233444444443222 23345667889999999
Q ss_pred HHHHHHHHH-----------------------HHHHhHhcCCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHH
Q 000746 772 RVSMARAVF-----------------------NSCIKEELRGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELS 827 (1303)
Q Consensus 772 RiaLARAl~-----------------------~~~i~~~~~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~ 827 (1303)
|++||||+. .+.+++..+++|+|++||+++.+ ..||++++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 154 RLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 999999954 23444444679999999999987 569999999999999999999886
Q ss_pred hc
Q 000746 828 KH 829 (1303)
Q Consensus 828 ~~ 829 (1303)
++
T Consensus 234 ~~ 235 (250)
T PRK14245 234 TN 235 (250)
T ss_pred cC
Confidence 53
No 188
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.94 E-value=4.5e-27 Score=257.97 Aligned_cols=166 Identities=23% Similarity=0.412 Sum_probs=129.0
Q ss_pred EEEEeeEEEeCCC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE---------------EcCe
Q 000746 641 VSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV---------------IRGT 704 (1303)
Q Consensus 641 i~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~---------------~~~~ 704 (1303)
++++|++++|++. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .++.
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 6899999999653 36999999999999999999999999999999999999998874321 1236
Q ss_pred EEEEccCccccc-ccHHHHHccCCC---CC----hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHH
Q 000746 705 VAYVPQISWIFN-ATLRKNILFGSE---FD----PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMA 776 (1303)
Q Consensus 705 iayv~Q~p~l~~-~TireNI~~g~~---~~----~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLA 776 (1303)
++|++|+|.++. .|++||+.++.. .+ +++..++++..++.+..+ ....+||||||||++||
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la 150 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAH-----------ALPMQLSGGEQQRVAIA 150 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHHHHHH
Confidence 999999999885 699999987521 11 234455555555543332 23357999999999999
Q ss_pred HHHHH-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEE
Q 000746 777 RAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMI 817 (1303)
Q Consensus 777 RAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i 817 (1303)
||+.. +.+.+.. +++|+|+|||+++.+. .||++++|++|++
T Consensus 151 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 151 RAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99542 2333332 4789999999999886 5999999999975
No 189
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.94 E-value=1.2e-26 Score=246.13 Aligned_cols=142 Identities=33% Similarity=0.638 Sum_probs=123.6
Q ss_pred EEEEeeEEEeCCC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE------------cCeEEE
Q 000746 641 VSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI------------RGTVAY 707 (1303)
Q Consensus 641 i~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~------------~~~iay 707 (1303)
++++|++++|++. .++++|+||++++||+++|+||||||||||+++|+|+++|.+|. +.+ +..++|
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGE-ITLDGVPVSDLEKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCE-EEECCEEHHHHHHHHHhhEEE
Confidence 4789999999764 36999999999999999999999999999999999999999874 333 245999
Q ss_pred EccCcccccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH------
Q 000746 708 VPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN------ 781 (1303)
Q Consensus 708 v~Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~------ 781 (1303)
++|+|++++.|++||+ ..+||||||||++||||++.
T Consensus 80 ~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~ll 121 (178)
T cd03247 80 LNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVL 121 (178)
T ss_pred EccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999998 56799999999999999542
Q ss_pred -----------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCEEEEec
Q 000746 782 -----------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGMIKEEG 821 (1303)
Q Consensus 782 -----------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g 821 (1303)
+.+.+..+++|+|++||+++.++.||++++|++|++++.|
T Consensus 122 lDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 122 LDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 3344444689999999999999999999999999998764
No 190
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=5.1e-27 Score=263.53 Aligned_cols=181 Identities=27% Similarity=0.367 Sum_probs=138.6
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCCCceEE--------------E
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP-----PLKDASVV--------------I 701 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~-----~~~g~~~~--------------~ 701 (1303)
-+++|+++.|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |.+|.+.. .
T Consensus 6 ~~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 84 (251)
T PRK14244 6 ASVKNLNLWYGS-KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLL 84 (251)
T ss_pred EEeeeEEEEECC-eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHH
Confidence 468999999964 479999999999999999999999999999999999986 35664321 1
Q ss_pred cCeEEEEccCcccccccHHHHHccCCCC-----Chh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHH
Q 000746 702 RGTVAYVPQISWIFNATLRKNILFGSEF-----DPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQR 772 (1303)
Q Consensus 702 ~~~iayv~Q~p~l~~~TireNI~~g~~~-----~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQR 772 (1303)
++.++|++|++.++++|++||+.++... +.+ +..++++..++.+++ .+.++..+.+||||||||
T Consensus 85 ~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~qr 157 (251)
T PRK14244 85 RAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEEL-------GDRLKDSAFELSGGQQQR 157 (251)
T ss_pred hhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhcChhhCCHHHHHH
Confidence 3469999999999999999999875211 111 122233333332211 123455678899999999
Q ss_pred HHHHHHHH-----------------------HHHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHh
Q 000746 773 VSMARAVF-----------------------NSCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 773 iaLARAl~-----------------------~~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
++||||++ .+.+.+..+++|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 158 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (251)
T PRK14244 158 LCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFK 237 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHhc
Confidence 99999954 234444446899999999999875 599999999999999999988765
Q ss_pred c
Q 000746 829 H 829 (1303)
Q Consensus 829 ~ 829 (1303)
.
T Consensus 238 ~ 238 (251)
T PRK14244 238 N 238 (251)
T ss_pred C
Confidence 3
No 191
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=7e-27 Score=260.90 Aligned_cols=183 Identities=25% Similarity=0.369 Sum_probs=136.6
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcCeEEEE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRGTVAYV 708 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~~iayv 708 (1303)
++++|++++|++..++|+|+||+|++|++++|+||||||||||+++|.|+++|++|.+.. .+..++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence 468999999975246999999999999999999999999999999999999998874321 12469999
Q ss_pred ccCccccc-ccHHHHHccCCC---CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH---
Q 000746 709 PQISWIFN-ATLRKNILFGSE---FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN--- 781 (1303)
Q Consensus 709 ~Q~p~l~~-~TireNI~~g~~---~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~--- 781 (1303)
+|+|.++. .|++||+.++.. .+.+...+ ...+.++.+.-..+........+||||||||++||||++.
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 155 (242)
T cd03295 81 IQQIGLFPHMTVEENIALVPKLLKWPKEKIRE-----RADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPP 155 (242)
T ss_pred ccCccccCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999885 699999987532 22111111 1112222221110012345667899999999999999542
Q ss_pred --------------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHh
Q 000746 782 --------------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 782 --------------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
+.+.+.. .++|+|++||+++.+ ..||+|++|++|++++.|+++++.+
T Consensus 156 llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 225 (242)
T cd03295 156 LLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225 (242)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHc
Confidence 2344432 379999999999975 5699999999999999999888754
No 192
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.3e-26 Score=263.43 Aligned_cols=181 Identities=23% Similarity=0.327 Sum_probs=141.9
Q ss_pred cEEEEeeEEEeCCC--CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcCeE
Q 000746 640 AVSIKNGNFSWDSK--SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRGTV 705 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~--~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~~i 705 (1303)
.++++|++++|++. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|.+|.+.. .+..+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743 35899999999999999999999999999999999999999985321 13459
Q ss_pred EEEccCcc--cccccHHHHHccCCC---CChh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHH
Q 000746 706 AYVPQISW--IFNATLRKNILFGSE---FDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMA 776 (1303)
Q Consensus 706 ayv~Q~p~--l~~~TireNI~~g~~---~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLA 776 (1303)
+|++|+|. +++.|+.|||.++.. .+++ ++.++++.+++.+.. ......||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFK-----------TREPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHh-----------hCCcccCCHHHHHHHHHH
Confidence 99999984 678899999987532 2222 234444444443322 224567999999999999
Q ss_pred HHHHH-----------------------HHHhHhcC--CCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcch
Q 000746 777 RAVFN-----------------------SCIKEELR--GKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGR 831 (1303)
Q Consensus 777 RAl~~-----------------------~~i~~~~~--~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~ 831 (1303)
||+.. +.+.+..+ ++|+|++||+++.+..||+|++|++|++++.|+++++.+..+
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 232 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATSE 232 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcCHH
Confidence 99642 23333332 799999999999988899999999999999999999876543
No 193
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.94 E-value=7.6e-27 Score=257.44 Aligned_cols=180 Identities=29% Similarity=0.471 Sum_probs=135.6
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-------------EcCeEEE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-------------IRGTVAY 707 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-------------~~~~iay 707 (1303)
++++|++++|++ .++++|+||++++||+++|+||||||||||+++|.|+++|++|.+.. .+..++|
T Consensus 1 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (222)
T cd03224 1 LEVENLNAGYGK-SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGY 79 (222)
T ss_pred CEEeeEEeecCC-eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence 468999999975 46999999999999999999999999999999999999999874321 1245999
Q ss_pred EccCcccccc-cHHHHHccCCCCC-hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH----
Q 000746 708 VPQISWIFNA-TLRKNILFGSEFD-PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN---- 781 (1303)
Q Consensus 708 v~Q~p~l~~~-TireNI~~g~~~~-~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~---- 781 (1303)
++|++.++.. |++||+.++.... ..+..+.++ .+.+.+..++ ........+||||||||++||||++.
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~--~~l~~~~~l~----~~~~~~~~~LS~G~~qrv~laral~~~p~l 153 (222)
T cd03224 80 VPEGRRIFPELTVEENLLLGAYARRRAKRKARLE--RVYELFPRLK----ERRKQLAGTLSGGEQQMLAIARALMSRPKL 153 (222)
T ss_pred eccccccCCCCcHHHHHHHHhhhcCchhHHHHHH--HHHHHHHhhh----hhhhCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999998875 9999998864321 111111111 1111121122 22345567899999999999999542
Q ss_pred -------------------HHHhHhc-CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHH
Q 000746 782 -------------------SCIKEEL-RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELS 827 (1303)
Q Consensus 782 -------------------~~i~~~~-~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~ 827 (1303)
+.+.+.. +++|+|++||+++.+ ..||+|++|++|++++.|+.+++.
T Consensus 154 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 154 LLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 2343332 578999999999986 559999999999999999888764
No 194
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.5e-26 Score=261.60 Aligned_cols=184 Identities=21% Similarity=0.302 Sum_probs=144.1
Q ss_pred CCCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CCCceEE-----------
Q 000746 637 ELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP-----LKDASVV----------- 700 (1303)
Q Consensus 637 ~~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~-----~~g~~~~----------- 700 (1303)
..+.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+.+| ++|.+..
T Consensus 13 ~~~~l~~~~l~~~~~~-~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~ 91 (265)
T PRK14252 13 TQQKSEVNKLNFYYGG-YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91 (265)
T ss_pred CCceEEEEEEEEEECC-eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccc
Confidence 3457999999999975 4799999999999999999999999999999999999875 5653321
Q ss_pred -----EcCeEEEEccCcccccccHHHHHccCCC---CC-----hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCch
Q 000746 701 -----IRGTVAYVPQISWIFNATLRKNILFGSE---FD-----PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISG 767 (1303)
Q Consensus 701 -----~~~~iayv~Q~p~l~~~TireNI~~g~~---~~-----~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSG 767 (1303)
.+..++|++|++.++.+|++|||.++.. .+ +++..++++.+++.+++ .+..+....+|||
T Consensus 92 ~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~ 164 (265)
T PRK14252 92 VDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEV-------KDRLGDLAFNLSG 164 (265)
T ss_pred cCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhh-------hHHHhCCcccCCH
Confidence 1346999999999999999999987531 11 23344455544443322 2344566789999
Q ss_pred HHHHHHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCH
Q 000746 768 GQKQRVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSF 823 (1303)
Q Consensus 768 GQkQRiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~ 823 (1303)
|||||++||||+.. +.+.+..+++|+|+|||+++.+. .||++++|++|++++.|++
T Consensus 165 G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~ 244 (265)
T PRK14252 165 GQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGAT 244 (265)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999542 23444445689999999999975 6999999999999999999
Q ss_pred HHHHh
Q 000746 824 EELSK 828 (1303)
Q Consensus 824 ~~l~~ 828 (1303)
+++..
T Consensus 245 ~~~~~ 249 (265)
T PRK14252 245 DTIFI 249 (265)
T ss_pred HHHHh
Confidence 88764
No 195
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=8.2e-27 Score=264.73 Aligned_cols=179 Identities=25% Similarity=0.409 Sum_probs=139.0
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE--------------EcCeEE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV--------------IRGTVA 706 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~--------------~~~~ia 706 (1303)
++++|+++.|+++.++++|+||+|++||+++|+||||||||||+++|+|+++|.+|.+.. .++.|+
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 81 (275)
T PRK13639 2 LETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVG 81 (275)
T ss_pred EEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheE
Confidence 689999999975456999999999999999999999999999999999999998874321 124599
Q ss_pred EEccCc--ccccccHHHHHccCCC---CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHH
Q 000746 707 YVPQIS--WIFNATLRKNILFGSE---FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMAR 777 (1303)
Q Consensus 707 yv~Q~p--~l~~~TireNI~~g~~---~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLAR 777 (1303)
|++|+| .+++.|++|||.++.. .+. ++..++++.+++.+. ......+||||||||++|||
T Consensus 82 ~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~LS~Gq~qrv~lar 150 (275)
T PRK13639 82 IVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGF-----------ENKPPHHLSGGQKKRVAIAG 150 (275)
T ss_pred EEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchh-----------hcCChhhCCHHHHHHHHHHH
Confidence 999998 5788999999987531 222 223334444433211 11235679999999999999
Q ss_pred HHHH-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHhcc
Q 000746 778 AVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 778 Al~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~~~ 830 (1303)
|++. +.+.+.. +++|+|++||+++.+. .||++++|++|++++.|+++++....
T Consensus 151 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 228 (275)
T PRK13639 151 ILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDI 228 (275)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCh
Confidence 9642 2344432 4799999999999876 69999999999999999999886543
No 196
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=9.1e-27 Score=261.60 Aligned_cols=182 Identities=24% Similarity=0.319 Sum_probs=139.9
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCCCceEE--------------
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP-----PLKDASVV-------------- 700 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~-----~~~g~~~~-------------- 700 (1303)
.++++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |.+|.+..
T Consensus 4 ~l~~~~l~~~~~~-~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~ 82 (251)
T PRK14251 4 IISAKDVHLSYGN-YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVE 82 (251)
T ss_pred eEEEEeeEEEECC-eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHH
Confidence 5899999999975 479999999999999999999999999999999999986 35663211
Q ss_pred EcCeEEEEccCcccccccHHHHHccCCC---C-Ch----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHH
Q 000746 701 IRGTVAYVPQISWIFNATLRKNILFGSE---F-DP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQR 772 (1303)
Q Consensus 701 ~~~~iayv~Q~p~l~~~TireNI~~g~~---~-~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQR 772 (1303)
.+..++|++|++.+++.|++||+.++.. . ++ ++..++++..++.++. .........+||||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~qr 155 (251)
T PRK14251 83 LRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET-------KDNLDRNAQAFSGGQQQR 155 (251)
T ss_pred hhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch-------HHHhccChhhCCHHHHHH
Confidence 1346999999999999999999987532 1 11 1223333333332111 112345667899999999
Q ss_pred HHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHh
Q 000746 773 VSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 773 iaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
++||||+.. +.+.+..+++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 156 ~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 235 (251)
T PRK14251 156 ICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFI 235 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHHh
Confidence 999999542 33444445789999999999865 599999999999999999998764
Q ss_pred c
Q 000746 829 H 829 (1303)
Q Consensus 829 ~ 829 (1303)
.
T Consensus 236 ~ 236 (251)
T PRK14251 236 A 236 (251)
T ss_pred C
Confidence 3
No 197
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1e-26 Score=261.81 Aligned_cols=182 Identities=21% Similarity=0.326 Sum_probs=140.6
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CCCceEE-------------
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP-----LKDASVV------------- 700 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~-----~~g~~~~------------- 700 (1303)
+.++++|+++.|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++| ++|.+..
T Consensus 11 ~~l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 11 PQIKVENLNLWYGE-KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred eeEEEeeeEEEeCC-eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence 46999999999974 4699999999999999999999999999999999999875 6764321
Q ss_pred -EcCeEEEEccCcccccccHHHHHccCCC---CChhh----HHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHH
Q 000746 701 -IRGTVAYVPQISWIFNATLRKNILFGSE---FDPAK----YWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQR 772 (1303)
Q Consensus 701 -~~~~iayv~Q~p~l~~~TireNI~~g~~---~~~~~----~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQR 772 (1303)
.++.++|++|++.+++.|++||+.++.. .+.++ ..++++.+++.+++ .........+||||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~qr 162 (258)
T PRK14268 90 ELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDET-------SDRLKSPALSLSGGQQQR 162 (258)
T ss_pred HHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCChhhCCHHHHHH
Confidence 1345999999999999999999987531 22222 23333333332111 122345667899999999
Q ss_pred HHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHh
Q 000746 773 VSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 773 iaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
++||||++. +.+++..+++|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 163 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 242 (258)
T PRK14268 163 LCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFH 242 (258)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999642 33444445799999999999875 599999999999999999998864
No 198
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.3e-26 Score=260.16 Aligned_cols=181 Identities=24% Similarity=0.362 Sum_probs=139.6
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CCCceEE--------------
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP-----LKDASVV-------------- 700 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~-----~~g~~~~-------------- 700 (1303)
.++++|+++.|++ .++++|+||+|++||+++|+||||||||||+++|+|.+++ ++|.+..
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14240 3 KISVKDLDLFYGD-FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQ 81 (250)
T ss_pred eEEEEEEEEEECC-ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHH
Confidence 5899999999975 4799999999999999999999999999999999998763 4663221
Q ss_pred EcCeEEEEccCcccccccHHHHHccCCCC----Ch----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHH
Q 000746 701 IRGTVAYVPQISWIFNATLRKNILFGSEF----DP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQR 772 (1303)
Q Consensus 701 ~~~~iayv~Q~p~l~~~TireNI~~g~~~----~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQR 772 (1303)
.++.++|++|++.+++.|++||+.++... +. ++..++++.+++.+++. ........+||||||||
T Consensus 82 ~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~qr 154 (250)
T PRK14240 82 LRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSGGQQQR 154 (250)
T ss_pred HhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCHHHHHH
Confidence 13469999999999999999999876321 11 22233333333322221 23445677899999999
Q ss_pred HHHHHHHH-----------------------HHHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHh
Q 000746 773 VSMARAVF-----------------------NSCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 773 iaLARAl~-----------------------~~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
++||||++ .+.+.+..+++|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 155 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 234 (250)
T PRK14240 155 LCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFT 234 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999954 234444446789999999999765 599999999999999999988764
No 199
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=9e-27 Score=258.47 Aligned_cols=172 Identities=23% Similarity=0.396 Sum_probs=134.2
Q ss_pred cEEEEeeEEEeCCC---CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----E-----------
Q 000746 640 AVSIKNGNFSWDSK---SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----I----------- 701 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~---~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----~----------- 701 (1303)
.++++|+++.|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+.. +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 58999999999743 36999999999999999999999999999999999999999874321 0
Q ss_pred -cCeEEEEccCcccccc-cHHHHHccCC---CCCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHH
Q 000746 702 -RGTVAYVPQISWIFNA-TLRKNILFGS---EFDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQR 772 (1303)
Q Consensus 702 -~~~iayv~Q~p~l~~~-TireNI~~g~---~~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQR 772 (1303)
+..++|++|++.++.. |++||+.++. ..++ ++..++++..++. ........+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLE-----------HRANHRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-----------hhhhCChhhCCHHHHHH
Confidence 1459999999998864 9999998742 1222 2233334433332 22344567899999999
Q ss_pred HHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCcccccCEEEEEeCCEEEEecC
Q 000746 773 VSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGS 822 (1303)
Q Consensus 773 iaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~ 822 (1303)
++||||+.. +.+.+.. +++|+|++||+++.+..+|++++|++|++++.|+
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999542 2344432 4799999999999998899999999999998775
No 200
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.7e-26 Score=261.69 Aligned_cols=180 Identities=24% Similarity=0.359 Sum_probs=139.8
Q ss_pred CcEEEEeeEEEeCCC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-------------cCe
Q 000746 639 PAVSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-------------RGT 704 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~-------------~~~ 704 (1303)
+.++++|+++.|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|.+|.+ .+ ++.
T Consensus 6 ~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i-~~~g~~~~~~~~~~~~~~ 84 (269)
T PRK13648 6 SIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI-FYNNQAITDDNFEKLRKH 84 (269)
T ss_pred ceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEECCcCCHHHHHhh
Confidence 358999999999754 369999999999999999999999999999999999999998743 32 235
Q ss_pred EEEEccCcc--cccccHHHHHccCCC---CChh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHH
Q 000746 705 VAYVPQISW--IFNATLRKNILFGSE---FDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSM 775 (1303)
Q Consensus 705 iayv~Q~p~--l~~~TireNI~~g~~---~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaL 775 (1303)
++|++|+|. ++..|+++|+.++.. .+.+ +..++++..++.+. ......+||||||||++|
T Consensus 85 i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~l 153 (269)
T PRK13648 85 IGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLER-----------ADYEPNALSGGQKQRVAI 153 (269)
T ss_pred eeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchh-----------hhCCcccCCHHHHHHHHH
Confidence 999999995 456789999988632 2222 22233333333221 223457899999999999
Q ss_pred HHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcc
Q 000746 776 ARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 776 ARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~ 830 (1303)
|||++. +.+++.. .++|+|++||+++.+..||+|++|++|++++.|+++++....
T Consensus 154 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 233 (269)
T PRK13648 154 AGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHA 233 (269)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcCH
Confidence 999642 2344433 378999999999998889999999999999999999886543
No 201
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.1e-26 Score=260.53 Aligned_cols=183 Identities=22% Similarity=0.341 Sum_probs=140.8
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCCCceEE----E--------
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP-----PLKDASVV----I-------- 701 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~-----~~~g~~~~----~-------- 701 (1303)
..++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|.+.. +
T Consensus 12 ~~l~i~nl~~~~~~-~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~ 90 (269)
T PRK14259 12 IIISLQNVTISYGT-FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPV 90 (269)
T ss_pred ceEEEEeEEEEECC-EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHH
Confidence 46999999999975 469999999999999999999999999999999999987 46764321 1
Q ss_pred --cCeEEEEccCcccccccHHHHHccCCCC---C---hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHH
Q 000746 702 --RGTVAYVPQISWIFNATLRKNILFGSEF---D---PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRV 773 (1303)
Q Consensus 702 --~~~iayv~Q~p~l~~~TireNI~~g~~~---~---~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRi 773 (1303)
++.++|++|++.++..|++||+.++... + +++..++++.+++.. +..........+||||||||+
T Consensus 91 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~~qrl 163 (269)
T PRK14259 91 EVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWD-------ECKDKLNESGYSLSGGQQQRL 163 (269)
T ss_pred HHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcc-------hhhhhhCCCcccCCHHHHHHH
Confidence 2359999999999988999999986432 1 122333344333321 122234456678999999999
Q ss_pred HHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCcc-cccCEEEEEeC-----------CEEE
Q 000746 774 SMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFL-PHVDRIILVSE-----------GMIK 818 (1303)
Q Consensus 774 aLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l-~~aD~ii~l~~-----------G~i~ 818 (1303)
+||||++. +.+.+..+++|+|++||+++.+ ..||++++|++ |+++
T Consensus 164 ~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~ 243 (269)
T PRK14259 164 CIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLV 243 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEE
Confidence 99999542 3344444578999999999886 56999999996 6799
Q ss_pred EecCHHHHHhc
Q 000746 819 EEGSFEELSKH 829 (1303)
Q Consensus 819 ~~g~~~~l~~~ 829 (1303)
+.|+.+++...
T Consensus 244 ~~~~~~~~~~~ 254 (269)
T PRK14259 244 EFNETKKIFNS 254 (269)
T ss_pred EeCCHHHHHhC
Confidence 99999988653
No 202
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.8e-26 Score=263.99 Aligned_cols=186 Identities=24% Similarity=0.391 Sum_probs=139.4
Q ss_pred CcEEEEeeEEEeCCCC----CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE--------------
Q 000746 639 PAVSIKNGNFSWDSKS----PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-------------- 700 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~----~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-------------- 700 (1303)
+.++++|++++|+++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+..
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 4689999999997542 5999999999999999999999999999999999999999875321
Q ss_pred ---EcCeEEEEccCcc--cccccHHHHHccCCC---CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHH
Q 000746 701 ---IRGTVAYVPQISW--IFNATLRKNILFGSE---FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQR 772 (1303)
Q Consensus 701 ---~~~~iayv~Q~p~--l~~~TireNI~~g~~---~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQR 772 (1303)
.++.|+|++|+|. +++.|++|||.++.. .+.++..+.+ ..+.+.+ .++.+ .......+||||||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~--~~ll~~~-~L~~~---~~~~~~~~LS~Gq~qr 158 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKV--PELLKLV-QLPED---YVKRSPFELSGGQKRR 158 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHc-CCChh---HhcCChhhCCHHHHHH
Confidence 1236999999984 678899999987642 2222211111 1111221 22222 1234567899999999
Q ss_pred HHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHH
Q 000746 773 VSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEEL 826 (1303)
Q Consensus 773 iaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l 826 (1303)
++||||++. +.+.+.. .++|+|++||+++.+ ..||+|++|++|++++.|+++++
T Consensus 159 v~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 238 (289)
T PRK13645 159 VALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEI 238 (289)
T ss_pred HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999642 2344433 378999999999986 56999999999999999999887
Q ss_pred Hhcc
Q 000746 827 SKHG 830 (1303)
Q Consensus 827 ~~~~ 830 (1303)
.+..
T Consensus 239 ~~~~ 242 (289)
T PRK13645 239 FSNQ 242 (289)
T ss_pred hcCH
Confidence 6543
No 203
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.3e-26 Score=260.13 Aligned_cols=183 Identities=21% Similarity=0.298 Sum_probs=142.7
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CCCceEE-------------
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP-----LKDASVV------------- 700 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~-----~~g~~~~------------- 700 (1303)
+.++++|+++.|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|.+..
T Consensus 3 ~~l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 3 IKMESKNLNLWYGE-KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred cEEEEEEeEEEECC-eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 35899999999974 4699999999999999999999999999999999999875 5663321
Q ss_pred -EcCeEEEEccCcccccccHHHHHccCCCC----Ch----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHH
Q 000746 701 -IRGTVAYVPQISWIFNATLRKNILFGSEF----DP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQ 771 (1303)
Q Consensus 701 -~~~~iayv~Q~p~l~~~TireNI~~g~~~----~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQ 771 (1303)
.+..++|++|++.+++.|++||+.++... +. ++..++++.+++.+++. .........|||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~q 154 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVK-------DDLKKSALKLSGGQQQ 154 (251)
T ss_pred HHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHHHH
Confidence 13459999999999999999999976321 21 23344555554433222 2234566789999999
Q ss_pred HHHHHHHHH-----------------------HHHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHH
Q 000746 772 RVSMARAVF-----------------------NSCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELS 827 (1303)
Q Consensus 772 RiaLARAl~-----------------------~~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~ 827 (1303)
|++||||+. .+.+++..+++|+|++||+++.+. .||++++|++|++++.|+.+++.
T Consensus 155 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 155 RLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 999999954 234445445789999999999865 59999999999999999999886
Q ss_pred hc
Q 000746 828 KH 829 (1303)
Q Consensus 828 ~~ 829 (1303)
..
T Consensus 235 ~~ 236 (251)
T PRK14270 235 LE 236 (251)
T ss_pred cC
Confidence 43
No 204
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=2e-26 Score=263.08 Aligned_cols=180 Identities=28% Similarity=0.447 Sum_probs=138.4
Q ss_pred cEEEEeeEEEeCCC----CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----E----------
Q 000746 640 AVSIKNGNFSWDSK----SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----I---------- 701 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~----~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----~---------- 701 (1303)
.++++|+++.|++. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. +
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 37899999999742 36999999999999999999999999999999999999999874321 1
Q ss_pred --cCeEEEEccCc--ccccccHHHHHccCCC---CChh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHH
Q 000746 702 --RGTVAYVPQIS--WIFNATLRKNILFGSE---FDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQK 770 (1303)
Q Consensus 702 --~~~iayv~Q~p--~l~~~TireNI~~g~~---~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQk 770 (1303)
+..|+|++|+| .+++.|++|||.++.. .+.+ +..++++.+++..+ .......+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~~~~LSgGq~ 151 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSED----------LISKSPFELSGGQM 151 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------HhhCCcccCCHHHH
Confidence 23599999998 5778899999987532 2222 22333333333211 12344578999999
Q ss_pred HHHHHHHHHHH-----------------------HHHhHhc-CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHH
Q 000746 771 QRVSMARAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEE 825 (1303)
Q Consensus 771 QRiaLARAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~ 825 (1303)
||++||||+.. +.+.+.. ++.|+|++||+++.+ ..||++++|++|++++.|++++
T Consensus 152 qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (287)
T PRK13641 152 RRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKE 231 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999542 3344432 478999999999986 4699999999999999999998
Q ss_pred HHhc
Q 000746 826 LSKH 829 (1303)
Q Consensus 826 l~~~ 829 (1303)
+...
T Consensus 232 ~~~~ 235 (287)
T PRK13641 232 IFSD 235 (287)
T ss_pred HhcC
Confidence 7653
No 205
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.94 E-value=1e-26 Score=254.58 Aligned_cols=168 Identities=28% Similarity=0.426 Sum_probs=130.6
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-----------cCeEEEEc
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-----------RGTVAYVP 709 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~-----------~~~iayv~ 709 (1303)
++++|+++.|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|.+|.+ .+ +..++|++
T Consensus 1 i~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v-~~~g~~~~~~~~~~~~i~~~~ 78 (213)
T cd03301 1 VELENVTKRFGN-VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI-YIGGRDVTDLPPKDRDIAMVF 78 (213)
T ss_pred CEEEeeEEEECC-eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEECCcCCcccceEEEEe
Confidence 468999999975 479999999999999999999999999999999999999988743 32 23599999
Q ss_pred cCccccc-ccHHHHHccCCC---CChh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH
Q 000746 710 QISWIFN-ATLRKNILFGSE---FDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN 781 (1303)
Q Consensus 710 Q~p~l~~-~TireNI~~g~~---~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~ 781 (1303)
|++.++. .|++||+.++.. .+++ +..+.++..++++ .......+||||||||++||||+..
T Consensus 79 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qr~~laral~~ 147 (213)
T cd03301 79 QNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEH-----------LLDRKPKQLSGGQRQRVALGRAIVR 147 (213)
T ss_pred cChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHH-----------HHhCChhhCCHHHHHHHHHHHHHhc
Confidence 9999884 699999987532 2222 2233333333332 2334456899999999999999642
Q ss_pred -----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEec
Q 000746 782 -----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEG 821 (1303)
Q Consensus 782 -----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g 821 (1303)
+.+++.. .++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 148 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 148 EPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 2344432 3789999999999865 59999999999999875
No 206
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.6e-26 Score=263.19 Aligned_cols=184 Identities=20% Similarity=0.370 Sum_probs=141.0
Q ss_pred CCCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCCCceEE-----------
Q 000746 637 ELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP-----PLKDASVV----------- 700 (1303)
Q Consensus 637 ~~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~-----~~~g~~~~----------- 700 (1303)
..+.++++|+++.|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|.+..
T Consensus 36 ~~~~l~i~~l~~~~~~-~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 36 GETVIEARDLNVFYGD-EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred CCceEEEEEEEEEECC-EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 4456999999999975 469999999999999999999999999999999999987 56764321
Q ss_pred ---EcCeEEEEccCcccccccHHHHHccCCC---CC---hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHH
Q 000746 701 ---IRGTVAYVPQISWIFNATLRKNILFGSE---FD---PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQ 771 (1303)
Q Consensus 701 ---~~~~iayv~Q~p~l~~~TireNI~~g~~---~~---~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQ 771 (1303)
.++.++|++|++.+|..|++||+.++.. .. +++++++++..++.+.+. .....+..+|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LSgGe~q 187 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVK-------DQLDSSGLDLSGGQQQ 187 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhH-------HHHhCCcccCCHHHHH
Confidence 1346999999999998899999987531 11 223344444444322221 1234567789999999
Q ss_pred HHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEE-EEeCCEEEEecCHHHH
Q 000746 772 RVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRII-LVSEGMIKEEGSFEEL 826 (1303)
Q Consensus 772 RiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii-~l~~G~i~~~g~~~~l 826 (1303)
|++||||++. +.+++..+++|+|++||+++.+. .||+++ +|++|++++.|+++++
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 9999999642 33444445689999999999975 599975 5799999999999887
Q ss_pred Hh
Q 000746 827 SK 828 (1303)
Q Consensus 827 ~~ 828 (1303)
.+
T Consensus 268 ~~ 269 (285)
T PRK14254 268 FE 269 (285)
T ss_pred Hh
Confidence 54
No 207
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.8e-26 Score=261.33 Aligned_cols=184 Identities=21% Similarity=0.310 Sum_probs=141.5
Q ss_pred CCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCCCceEE------------
Q 000746 638 LPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP-----PLKDASVV------------ 700 (1303)
Q Consensus 638 ~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~-----~~~g~~~~------------ 700 (1303)
.+.++++|+++.|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++ |++|.+..
T Consensus 22 ~~~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 22 KVVFDTQNLNLWYGE-DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred ceEEEEeeeEEEECC-cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 346999999999975 469999999999999999999999999999999999987 57774321
Q ss_pred --EcCeEEEEccCcccccccHHHHHccCCC---CChh-h----HHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHH
Q 000746 701 --IRGTVAYVPQISWIFNATLRKNILFGSE---FDPA-K----YWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQK 770 (1303)
Q Consensus 701 --~~~~iayv~Q~p~l~~~TireNI~~g~~---~~~~-~----~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQk 770 (1303)
.++.++|++|+|.+|..|++||+.++.. .+++ . ..++++..++.+ +........+.+||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~l~~~~~~~~~~LSgGe~ 173 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWD-------ELKDRLHDNAYGLSGGQQ 173 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcc-------hHHHHHhcCcccCCHHHH
Confidence 1346999999999998999999987532 2211 1 112222221111 222334567789999999
Q ss_pred HHHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHH
Q 000746 771 QRVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEEL 826 (1303)
Q Consensus 771 QRiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l 826 (1303)
||++||||++. +.+.+..+++|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999642 34445446799999999999875 5999999999999999999988
Q ss_pred Hhc
Q 000746 827 SKH 829 (1303)
Q Consensus 827 ~~~ 829 (1303)
..+
T Consensus 254 ~~~ 256 (271)
T PRK14238 254 FSN 256 (271)
T ss_pred HcC
Confidence 653
No 208
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.94 E-value=1.6e-26 Score=251.92 Aligned_cols=168 Identities=22% Similarity=0.334 Sum_probs=134.6
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-----------cCeEEEEc
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-----------RGTVAYVP 709 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~-----------~~~iayv~ 709 (1303)
++++|++++|++ .++|+|+||++++|++++|+||||||||||+++|+|+.+|++|.+ .+ ++.++|++
T Consensus 1 l~~~~l~~~~~~-~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~~~i~~~~ 78 (208)
T cd03268 1 LKTNDLTKTYGK-KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEI-TFDGKSYQKNIEALRRIGALI 78 (208)
T ss_pred CEEEEEEEEECC-eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEE-EECCCcccchHHHHhhEEEec
Confidence 468999999964 479999999999999999999999999999999999999998743 32 24699999
Q ss_pred cCcccc-cccHHHHHccCCC---CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH----
Q 000746 710 QISWIF-NATLRKNILFGSE---FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN---- 781 (1303)
Q Consensus 710 Q~p~l~-~~TireNI~~g~~---~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~---- 781 (1303)
|++.++ +.|++||+.++.. .++++..++++..++.+.. ......||||||||++||||+..
T Consensus 79 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al~~~p~l 147 (208)
T cd03268 79 EAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSA-----------KKKVKGFSLGMKQRLGIALALLGNPDL 147 (208)
T ss_pred CCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHH-----------hhhHhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999887 6799999987532 2445556666666655433 23456799999999999999542
Q ss_pred -------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEec
Q 000746 782 -------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEG 821 (1303)
Q Consensus 782 -------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g 821 (1303)
+.+.+.. +++|+|++||+++.+. .||++++|++|++++.|
T Consensus 148 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 148 LILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 2333332 4799999999999875 59999999999998765
No 209
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.94 E-value=1.1e-26 Score=255.49 Aligned_cols=170 Identities=20% Similarity=0.355 Sum_probs=131.7
Q ss_pred EEEEeeEEEeCCCC---CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-----------EcCeEE
Q 000746 641 VSIKNGNFSWDSKS---PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-----------IRGTVA 706 (1303)
Q Consensus 641 i~~~~~~f~~~~~~---~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-----------~~~~ia 706 (1303)
++++|+++.|++.. ++++|+||++++||+++|+|+||||||||+++|.|+++|++|.+.. .++.++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 67899999997531 6999999999999999999999999999999999999999874321 134699
Q ss_pred EEccCccccc-ccHHHHHccCCC---CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHH
Q 000746 707 YVPQISWIFN-ATLRKNILFGSE---FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA 778 (1303)
Q Consensus 707 yv~Q~p~l~~-~TireNI~~g~~---~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARA 778 (1303)
|++|+|.++. .|++||+.+... .++ ++..++++..++. ........+||||||||++||||
T Consensus 82 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~lara 150 (218)
T cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGME-----------ELLDRRVGGFSTGMRQKVAIARA 150 (218)
T ss_pred EecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-----------HHHhhhhhhcCHHHHHHHHHHHH
Confidence 9999999987 499999976421 121 2233344444333 23345667899999999999999
Q ss_pred HHH-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEec
Q 000746 779 VFN-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEG 821 (1303)
Q Consensus 779 l~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g 821 (1303)
+.. +.+.+.. +++|+|++||+++.+. .+|++++|++|++++.|
T Consensus 151 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 151 LVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 542 2333332 4789999999999865 59999999999998764
No 210
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=5.7e-26 Score=251.91 Aligned_cols=176 Identities=26% Similarity=0.391 Sum_probs=138.4
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----------EcCeEEEEcc
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----------IRGTVAYVPQ 710 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----------~~~~iayv~Q 710 (1303)
++++|++++|++. ..|+||++++|++++|+||||||||||+++|+|+++|.+|.+.. .+..++|++|
T Consensus 2 l~~~~l~~~~~~~---~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 78 (232)
T PRK10771 2 LKLTDITWLYHHL---PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78 (232)
T ss_pred eEEEEEEEEECCc---cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEec
Confidence 6899999999742 24999999999999999999999999999999999999874321 1235999999
Q ss_pred Ccccccc-cHHHHHccCCC--C-----ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-
Q 000746 711 ISWIFNA-TLRKNILFGSE--F-----DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN- 781 (1303)
Q Consensus 711 ~p~l~~~-TireNI~~g~~--~-----~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~- 781 (1303)
++.++.+ |++||+.++.. . ++++..++++..++.+.++..| ..||||||||++||||+..
T Consensus 79 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~ 147 (232)
T PRK10771 79 ENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARCLVRE 147 (232)
T ss_pred ccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHHHhcC
Confidence 9998864 99999987531 1 1234555666666654444333 4799999999999999542
Q ss_pred ----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHhcc
Q 000746 782 ----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 782 ----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~~~ 830 (1303)
+.+.+.. .++|+|++||+++.+. .||++++|++|++.+.|+++++.+..
T Consensus 148 p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~~ 221 (232)
T PRK10771 148 QPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGK 221 (232)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCh
Confidence 2344433 3789999999999875 59999999999999999999887543
No 211
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=2.4e-26 Score=259.76 Aligned_cols=177 Identities=24% Similarity=0.373 Sum_probs=139.7
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-------------cCeE
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-------------RGTV 705 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~-------------~~~i 705 (1303)
..++++|+++.|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|.+ .+ ++.+
T Consensus 10 ~~l~i~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 10 TTFALRNVSFRVPG-RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEI-LLDAQPLESWSSKAFARKV 87 (265)
T ss_pred ceEEEeeEEEEECC-EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEE-EECCEehhhCCHHHHhhhe
Confidence 46899999999974 479999999999999999999999999999999999999988743 33 2359
Q ss_pred EEEccCccccc-ccHHHHHccCCC--------C---ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHH
Q 000746 706 AYVPQISWIFN-ATLRKNILFGSE--------F---DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRV 773 (1303)
Q Consensus 706 ayv~Q~p~l~~-~TireNI~~g~~--------~---~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRi 773 (1303)
+|++|++.++. .|++||+.++.. . ++++..+.++.+++.+.++. ...+||||||||+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv 156 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHR-----------LVDSLSGGERQRA 156 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcC-----------CcccCCHHHHHHH
Confidence 99999987664 599999987531 1 12234555555555443322 2357999999999
Q ss_pred HHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHH
Q 000746 774 SMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELS 827 (1303)
Q Consensus 774 aLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~ 827 (1303)
+||||+.. +.+.+.. .++|+|++||+++.+. .||+|++|++|++++.|+.+++.
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 99999532 2344432 3789999999999875 69999999999999999998876
Q ss_pred h
Q 000746 828 K 828 (1303)
Q Consensus 828 ~ 828 (1303)
.
T Consensus 237 ~ 237 (265)
T PRK10575 237 R 237 (265)
T ss_pred C
Confidence 4
No 212
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.94 E-value=1.2e-26 Score=266.25 Aligned_cols=179 Identities=25% Similarity=0.382 Sum_probs=139.5
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-----------EcCeEEE
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-----------IRGTVAY 707 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-----------~~~~iay 707 (1303)
..++++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+.. .+++|||
T Consensus 6 ~~i~i~~l~k~~~~-~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~ 84 (306)
T PRK13537 6 APIDFRNVEKRYGD-KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGV 84 (306)
T ss_pred ceEEEEeEEEEECC-eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEE
Confidence 46899999999974 46999999999999999999999999999999999999999874321 1356999
Q ss_pred EccCccccc-ccHHHHHccCCC---CChhhH----HHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHH
Q 000746 708 VPQISWIFN-ATLRKNILFGSE---FDPAKY----WKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAV 779 (1303)
Q Consensus 708 v~Q~p~l~~-~TireNI~~g~~---~~~~~~----~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl 779 (1303)
|||++.++. .|++||+.+... .+..+. .++++.++ +++..++.+ .+||||||||++||||+
T Consensus 85 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~~----~~LS~G~~qrl~la~aL 153 (306)
T PRK13537 85 VPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAK-------LENKADAKV----GELSGGMKRRLTLARAL 153 (306)
T ss_pred EeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-------CchHhcCch----hhCCHHHHHHHHHHHHH
Confidence 999999884 799999985322 122222 22233222 233334433 47999999999999996
Q ss_pred HH-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 780 FN-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 780 ~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
+. +.+.+.. +|+|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 154 ~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 154 VNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred hCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 42 3344432 4799999999999985 5999999999999999999998653
No 213
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.94 E-value=2.1e-26 Score=240.84 Aligned_cols=138 Identities=25% Similarity=0.402 Sum_probs=119.2
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc--CeEEEEccCccccccc
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR--GTVAYVPQISWIFNAT 718 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~--~~iayv~Q~p~l~~~T 718 (1303)
++++|++++|++++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|. +.++ ++++|++|++.++++|
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~~~~~i~~~~q~~~~~~~t 79 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGR-IGMPEGEDLLFLPQRPYLPLGT 79 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce-EEECCCceEEEECCCCcccccc
Confidence 468999999975457999999999999999999999999999999999999999874 4454 4899999999999999
Q ss_pred HHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-----------------
Q 000746 719 LRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN----------------- 781 (1303)
Q Consensus 719 ireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~----------------- 781 (1303)
++||+.++ ....||||||||++||||++.
T Consensus 80 v~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~ 125 (166)
T cd03223 80 LREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEE 125 (166)
T ss_pred HHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHH
Confidence 99999864 246899999999999999642
Q ss_pred ------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCC
Q 000746 782 ------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEG 815 (1303)
Q Consensus 782 ------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G 815 (1303)
+.+.+. ++|+|++||+++....||++++|++|
T Consensus 126 ~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~ 163 (166)
T cd03223 126 SEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGE 163 (166)
T ss_pred HHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCC
Confidence 223332 68999999999988899999999765
No 214
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.94 E-value=1.7e-26 Score=260.12 Aligned_cols=178 Identities=26% Similarity=0.413 Sum_probs=138.3
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----E-------------
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----I------------- 701 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----~------------- 701 (1303)
+.++++|+++.|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+.. +
T Consensus 4 ~~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (257)
T PRK10619 4 NKLNVIDLHKRYGE-HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVA 82 (257)
T ss_pred ccEEEeeeEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccc
Confidence 46899999999975 46999999999999999999999999999999999999998874321 1
Q ss_pred --------cCeEEEEccCccccc-ccHHHHHccCC----CCChh----hHHHHHHHHhhHHHhhcCCCCCCccc-cCCCC
Q 000746 702 --------RGTVAYVPQISWIFN-ATLRKNILFGS----EFDPA----KYWKTVDVSALQHDLDLLPDRDLTEI-GERGV 763 (1303)
Q Consensus 702 --------~~~iayv~Q~p~l~~-~TireNI~~g~----~~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~i-ge~G~ 763 (1303)
+..++|+||++.++. .|++||+.++. ..+++ +..+.++..++. ... .....
T Consensus 83 ~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~ 151 (257)
T PRK10619 83 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGID-----------ERAQGKYPV 151 (257)
T ss_pred cchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCC-----------hhhhhCCcc
Confidence 236999999999986 59999998642 12221 222223222221 211 34567
Q ss_pred CCchHHHHHHHHHHHHHH-----------------------HHHhHhc-CCCEEEEEecCCCcccc-cCEEEEEeCCEEE
Q 000746 764 NISGGQKQRVSMARAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLPH-VDRIILVSEGMIK 818 (1303)
Q Consensus 764 ~LSGGQkQRiaLARAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~~-aD~ii~l~~G~i~ 818 (1303)
.||||||||++||||+.. +.+.+.. +++|+|+|||+++.+.. ||+|++|++|+++
T Consensus 152 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 231 (257)
T PRK10619 152 HLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 231 (257)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 899999999999999642 2333333 48999999999999875 9999999999999
Q ss_pred EecCHHHHHh
Q 000746 819 EEGSFEELSK 828 (1303)
Q Consensus 819 ~~g~~~~l~~ 828 (1303)
+.|+++++.+
T Consensus 232 ~~~~~~~~~~ 241 (257)
T PRK10619 232 EEGAPEQLFG 241 (257)
T ss_pred EeCCHHHhhh
Confidence 9999988764
No 215
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.9e-26 Score=263.04 Aligned_cols=179 Identities=23% Similarity=0.395 Sum_probs=137.6
Q ss_pred EEEEeeEEEeCCC----CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----------------
Q 000746 641 VSIKNGNFSWDSK----SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV---------------- 700 (1303)
Q Consensus 641 i~~~~~~f~~~~~----~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~---------------- 700 (1303)
++++|++++|++. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+..
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 7899999999742 36999999999999999999999999999999999999999875321
Q ss_pred EcCeEEEEccCc--ccccccHHHHHccCCC---CChhhHH----HHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHH
Q 000746 701 IRGTVAYVPQIS--WIFNATLRKNILFGSE---FDPAKYW----KTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQ 771 (1303)
Q Consensus 701 ~~~~iayv~Q~p--~l~~~TireNI~~g~~---~~~~~~~----~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQ 771 (1303)
.+..|+|++|+| .+++.|++|||.++.. .++++.. ++++..++.+ ........+|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~q 152 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISE----------SLFEKNPFELSGGQMR 152 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCCcccCCHHHHH
Confidence 123599999998 6788999999987532 2232222 2222222211 1123456789999999
Q ss_pred HHHHHHHHHH-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHH
Q 000746 772 RVSMARAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEEL 826 (1303)
Q Consensus 772 RiaLARAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l 826 (1303)
|++||||++. +.+.+.. .++|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999542 2333332 4789999999999874 6999999999999999999988
Q ss_pred Hhc
Q 000746 827 SKH 829 (1303)
Q Consensus 827 ~~~ 829 (1303)
.+.
T Consensus 233 ~~~ 235 (280)
T PRK13649 233 FQD 235 (280)
T ss_pred hcC
Confidence 654
No 216
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.8e-26 Score=259.09 Aligned_cols=182 Identities=24% Similarity=0.339 Sum_probs=138.9
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CCCceEE------------Ec
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP-----LKDASVV------------IR 702 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~-----~~g~~~~------------~~ 702 (1303)
.++++|+++.|++ .++++|+||+|++||+++|+||||||||||+++|.|+++| ++|.+.. .+
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 81 (250)
T PRK14247 3 KIEIRDLKVSFGQ-VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELR 81 (250)
T ss_pred eEEEEeeEEEECC-eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHh
Confidence 4889999999975 4699999999999999999999999999999999999974 5664321 13
Q ss_pred CeEEEEccCcccc-cccHHHHHccCCCC-----Ch----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHH
Q 000746 703 GTVAYVPQISWIF-NATLRKNILFGSEF-----DP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQR 772 (1303)
Q Consensus 703 ~~iayv~Q~p~l~-~~TireNI~~g~~~-----~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQR 772 (1303)
..|+|++|+|.++ +.|++||+.++... +. ++..++++.+++.+.+ .........+||||||||
T Consensus 82 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~qr 154 (250)
T PRK14247 82 RRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEV-------KDRLDAPAGKLSGGQQQR 154 (250)
T ss_pred ccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCCcccCCHHHHHH
Confidence 4699999999755 67999999875321 11 2233344444432211 112334567899999999
Q ss_pred HHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHh
Q 000746 773 VSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 773 iaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
++||||+.. +.+.+..+++|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 155 v~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (250)
T PRK14247 155 LCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFT 234 (250)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHHc
Confidence 999999542 33444445799999999999874 699999999999999999998864
Q ss_pred c
Q 000746 829 H 829 (1303)
Q Consensus 829 ~ 829 (1303)
.
T Consensus 235 ~ 235 (250)
T PRK14247 235 N 235 (250)
T ss_pred C
Confidence 3
No 217
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.94 E-value=1.9e-26 Score=258.99 Aligned_cols=177 Identities=24% Similarity=0.384 Sum_probs=137.9
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE--------------------
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-------------------- 700 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-------------------- 700 (1303)
|+++|+++.|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+..
T Consensus 1 i~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (252)
T TIGR03005 1 VRFSDVTKRFGI-LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADE 79 (252)
T ss_pred CEEEEEEEEeCC-eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccch
Confidence 478999999974 47999999999999999999999999999999999999998874321
Q ss_pred -----EcCeEEEEccCcccc-cccHHHHHccCCC----CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCc
Q 000746 701 -----IRGTVAYVPQISWIF-NATLRKNILFGSE----FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNIS 766 (1303)
Q Consensus 701 -----~~~~iayv~Q~p~l~-~~TireNI~~g~~----~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LS 766 (1303)
.++.++|++|++.++ +.|++||+.++.. .+. +++.+.++..++. ........+||
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS 148 (252)
T TIGR03005 80 KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLA-----------DKADHMPAQLS 148 (252)
T ss_pred hHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-----------hHhhcChhhcC
Confidence 134699999999988 5799999987521 222 1223333333332 23345567899
Q ss_pred hHHHHHHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEe
Q 000746 767 GGQKQRVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEE 820 (1303)
Q Consensus 767 GGQkQRiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~ 820 (1303)
||||||++||||+.. +.+.+.. .++|+|++||+++.+ ..+|++++|++|++++.
T Consensus 149 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T TIGR03005 149 GGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQ 228 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 999999999999542 2344433 378999999999987 46999999999999999
Q ss_pred cCHHHHHhc
Q 000746 821 GSFEELSKH 829 (1303)
Q Consensus 821 g~~~~l~~~ 829 (1303)
|+++++.+.
T Consensus 229 g~~~~~~~~ 237 (252)
T TIGR03005 229 GKPDEIFRQ 237 (252)
T ss_pred CCHHHHhcC
Confidence 999988643
No 218
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.5e-26 Score=259.49 Aligned_cols=181 Identities=22% Similarity=0.327 Sum_probs=139.6
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CCCceEE-------------E
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP-----LKDASVV-------------I 701 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~-----~~g~~~~-------------~ 701 (1303)
.++++|+++.|++ .++|+|+||+|++||+++|+||||||||||+++|.|+.+| ++|.... .
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 81 (249)
T PRK14253 3 KFNIENLDLFYGE-NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADL 81 (249)
T ss_pred eEEEeccEEEECC-eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHH
Confidence 4789999999974 4799999999999999999999999999999999999986 3663221 1
Q ss_pred cCeEEEEccCcccccccHHHHHccCCC---CC-hh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHH
Q 000746 702 RGTVAYVPQISWIFNATLRKNILFGSE---FD-PA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRV 773 (1303)
Q Consensus 702 ~~~iayv~Q~p~l~~~TireNI~~g~~---~~-~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRi 773 (1303)
+..++|++|+|.++..|++||+.++.. .+ ++ +..++++..++.+++ .+.......+||||||||+
T Consensus 82 ~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~qrv 154 (249)
T PRK14253 82 RIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEV-------KDRLKSHAFGLSGGQQQRL 154 (249)
T ss_pred HhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhh-------hHHhhcCcccCCHHHHHHH
Confidence 245999999999999999999987632 11 11 122233333333222 2334556778999999999
Q ss_pred HHHHHHH-----------------------HHHHhHhcCCCEEEEEecCCCcccc-cCEEEEEeCCEEEEecCHHHHHh
Q 000746 774 SMARAVF-----------------------NSCIKEELRGKTRILVTNQLHFLPH-VDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 774 aLARAl~-----------------------~~~i~~~~~~~TvilvtH~~~~l~~-aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
+||||++ .+.+.+..+++|+|++||+++.+.. ||++++|++|++++.|+.+++..
T Consensus 155 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (249)
T PRK14253 155 CIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFS 233 (249)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 9999954 2344554457899999999998764 99999999999999999887753
No 219
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.94 E-value=1.5e-26 Score=256.88 Aligned_cols=180 Identities=24% Similarity=0.373 Sum_probs=136.9
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-------------EcCeEEE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-------------IRGTVAY 707 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-------------~~~~iay 707 (1303)
++++|+++.|++ .++|+|+||++++|++++|+||||||||||+++|+|.++|++|.+.. .+..++|
T Consensus 1 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (232)
T cd03218 1 LRAENLSKRYGK-RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGY 79 (232)
T ss_pred CeEEEEEEEeCC-EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEE
Confidence 468999999974 46999999999999999999999999999999999999999874321 1235999
Q ss_pred EccCcccccc-cHHHHHccCCC---CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH--
Q 000746 708 VPQISWIFNA-TLRKNILFGSE---FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN-- 781 (1303)
Q Consensus 708 v~Q~p~l~~~-TireNI~~g~~---~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~-- 781 (1303)
++|++.++.+ |++||+.++.+ .+++...+ .+++.++.+ |..........+||||||||++||||+..
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 152 (232)
T cd03218 80 LPQEASIFRKLTVEENILAVLEIRGLSKKEREE-----KLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALATNP 152 (232)
T ss_pred ecCCccccccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 9999998876 99999987532 11111111 111222222 23333455667899999999999999542
Q ss_pred ---------------------HHHhHhc-CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHh
Q 000746 782 ---------------------SCIKEEL-RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 782 ---------------------~~i~~~~-~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
+.+++.. +++|+|++||+++.+ ..||+|++|++|++++.|+++++..
T Consensus 153 ~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 153 KFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 2333332 478999999999765 5699999999999999999988754
No 220
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.94 E-value=2.4e-26 Score=256.35 Aligned_cols=177 Identities=27% Similarity=0.410 Sum_probs=137.4
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE--------------EcCeEE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV--------------IRGTVA 706 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~--------------~~~~ia 706 (1303)
++++|+++.|++ .++++|+||++++||+++|+|+||||||||+++|+|+++|++|.+.. .+..++
T Consensus 2 l~~~~l~~~~~~-~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 80 (240)
T PRK09493 2 IEFKNVSKHFGP-TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAG 80 (240)
T ss_pred EEEEeEEEEECC-eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceE
Confidence 679999999974 46999999999999999999999999999999999999999874321 123699
Q ss_pred EEccCccccc-ccHHHHHccCC----CCChhh----HHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHH
Q 000746 707 YVPQISWIFN-ATLRKNILFGS----EFDPAK----YWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMAR 777 (1303)
Q Consensus 707 yv~Q~p~l~~-~TireNI~~g~----~~~~~~----~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLAR 777 (1303)
|++|++.++. .|++||+.++. ..+.++ ..++++..+ .+.........||||||||++|||
T Consensus 81 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~LS~G~~qrv~la~ 149 (240)
T PRK09493 81 MVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVG-----------LAERAHHYPSELSGGQQQRVAIAR 149 (240)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcC-----------ChHHHhcChhhcCHHHHHHHHHHH
Confidence 9999998885 69999998753 122222 222222222 223334455789999999999999
Q ss_pred HHHH-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 778 AVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 778 Al~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
|+.. +.+.+.. +++|+|++||+++.+. .||++++|++|++++.|+++++.+.
T Consensus 150 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 150 ALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 9542 2333332 4799999999999985 5999999999999999999887643
No 221
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.1e-26 Score=261.05 Aligned_cols=188 Identities=23% Similarity=0.317 Sum_probs=142.3
Q ss_pred CCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CCCceEE------------
Q 000746 638 LPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP-----LKDASVV------------ 700 (1303)
Q Consensus 638 ~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~-----~~g~~~~------------ 700 (1303)
.+.++++|++++|++ .++++|+||+|++||+++|+|+||||||||+++|+|+++| .+|.+..
T Consensus 19 ~~~l~i~nl~~~~~~-~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 19 APAMAAVNLTLGFAG-KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred CcEEEEeeEEEEECC-EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 346899999999974 4799999999999999999999999999999999999986 4663321
Q ss_pred -EcCeEEEEccCcccccccHHHHHccCCC----CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHH
Q 000746 701 -IRGTVAYVPQISWIFNATLRKNILFGSE----FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSM 775 (1303)
Q Consensus 701 -~~~~iayv~Q~p~l~~~TireNI~~g~~----~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaL 775 (1303)
.+..++|++|+|.+|+.|++||+.++.. .+++++.+... .+.+.+ .+.+...+.......+||||||||++|
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~--~~l~~~-~l~~~~~~~l~~~~~~LSgGq~qrl~L 174 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQ--ARLTEV-GLWDAVKDRLSDSPFRLSGGQQQLLCL 174 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHH--HHHHHc-CCCchhhhHhhCCcccCCHHHHHHHHH
Confidence 1346999999999999999999987632 23333322111 111111 122222234556778999999999999
Q ss_pred HHHHHH-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 776 ARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 776 ARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
|||++. +.+.+..+++|+|++||+++.+. .||++++|++|++++.|+++++.+.
T Consensus 175 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 252 (276)
T PRK14271 175 ARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252 (276)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999542 23444445689999999999865 5999999999999999999998654
No 222
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.5e-26 Score=260.12 Aligned_cols=182 Identities=23% Similarity=0.301 Sum_probs=138.8
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCC-----CCceEE--------------
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPL-----KDASVV-------------- 700 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~-----~g~~~~-------------- 700 (1303)
.++++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|. +|.+..
T Consensus 4 ~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (253)
T PRK14267 4 AIETVNLRVYYGS-NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIE 82 (253)
T ss_pred eEEEEeEEEEeCC-eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHH
Confidence 5889999999975 46999999999999999999999999999999999999874 663221
Q ss_pred EcCeEEEEccCcccccc-cHHHHHccCCCC-----Chh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHH
Q 000746 701 IRGTVAYVPQISWIFNA-TLRKNILFGSEF-----DPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQK 770 (1303)
Q Consensus 701 ~~~~iayv~Q~p~l~~~-TireNI~~g~~~-----~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQk 770 (1303)
.+..++|++|++.++.. |++||+.++... +.+ +..++++..++.+++ .........+||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~ 155 (253)
T PRK14267 83 VRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEV-------KDRLNDYPSNLSGGQR 155 (253)
T ss_pred HhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccch-------hhhhccChhhCCHHHH
Confidence 12469999999999865 999999875311 122 122233332222111 1223456778999999
Q ss_pred HHHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHH
Q 000746 771 QRVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEEL 826 (1303)
Q Consensus 771 QRiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l 826 (1303)
||++||||+.. +.+.+..+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (253)
T PRK14267 156 QRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKV 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999542 33444445789999999999865 5999999999999999999988
Q ss_pred Hhc
Q 000746 827 SKH 829 (1303)
Q Consensus 827 ~~~ 829 (1303)
.+.
T Consensus 236 ~~~ 238 (253)
T PRK14267 236 FEN 238 (253)
T ss_pred HhC
Confidence 643
No 223
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.4e-26 Score=260.05 Aligned_cols=182 Identities=24% Similarity=0.342 Sum_probs=140.2
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CCCceEE--------------
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP-----LKDASVV-------------- 700 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~-----~~g~~~~-------------- 700 (1303)
.++++|+++.|++ .++++|+||++++||+++|+|+||||||||+++|+|+++| .+|.+..
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~ 81 (250)
T PRK14262 3 IIEIENFSAYYGE-KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTE 81 (250)
T ss_pred eEEEEeeEEEeCC-ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHH
Confidence 4889999999974 4799999999999999999999999999999999999874 6663221
Q ss_pred EcCeEEEEccCcccccccHHHHHccCCC---C-Chhh----HHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHH
Q 000746 701 IRGTVAYVPQISWIFNATLRKNILFGSE---F-DPAK----YWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQR 772 (1303)
Q Consensus 701 ~~~~iayv~Q~p~l~~~TireNI~~g~~---~-~~~~----~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQR 772 (1303)
.+..++|++|+|.++..|++||+.++.. . .+++ ..+.++..++.+++ +........+||||||||
T Consensus 82 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~qr 154 (250)
T PRK14262 82 YRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEV-------KSELNKPGTRLSGGQQQR 154 (250)
T ss_pred hhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchh-------HHHHhCChhhcCHHHHHH
Confidence 1346999999999999999999987531 1 1112 22233333332222 123456678999999999
Q ss_pred HHHHHHHH-----------------------HHHHhHhcCCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHh
Q 000746 773 VSMARAVF-----------------------NSCIKEELRGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 773 iaLARAl~-----------------------~~~i~~~~~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
++||||++ .+.+.+..+++|+|++||+++.+ ..+|++++|++|++++.|+++++.+
T Consensus 155 ~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (250)
T PRK14262 155 LCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVE 234 (250)
T ss_pred HHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 99999954 23444444578999999999975 5699999999999999999998865
Q ss_pred c
Q 000746 829 H 829 (1303)
Q Consensus 829 ~ 829 (1303)
.
T Consensus 235 ~ 235 (250)
T PRK14262 235 R 235 (250)
T ss_pred C
Confidence 3
No 224
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.8e-26 Score=252.27 Aligned_cols=167 Identities=21% Similarity=0.352 Sum_probs=131.3
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE------------cCeEEEE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI------------RGTVAYV 708 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~------------~~~iayv 708 (1303)
++++|+++.|++ .++++|+||++++| +++|+||||||||||+++|.|+++|++|.+ .+ ++.++|+
T Consensus 1 i~~~~~~~~~~~-~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~~~~i~~~ 77 (211)
T cd03264 1 LQLENLTKRYGK-KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTI-RIDGQDVLKQPQKLRRRIGYL 77 (211)
T ss_pred CEEEEEEEEECC-EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEE-EECCCccccchHHHHhheEEe
Confidence 478999999965 47999999999999 999999999999999999999999998743 32 3469999
Q ss_pred ccCcccccc-cHHHHHccCCC---CC----hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH
Q 000746 709 PQISWIFNA-TLRKNILFGSE---FD----PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF 780 (1303)
Q Consensus 709 ~Q~p~l~~~-TireNI~~g~~---~~----~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~ 780 (1303)
+|+|.+|.. |++||+.+... .+ +++..++++..++.+..+ ....+||||||||++||||+.
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~ 146 (211)
T cd03264 78 PQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK-----------KKIGSLSGGMRRRVGIAQALV 146 (211)
T ss_pred cCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHh-----------CchhhCCHHHHHHHHHHHHHh
Confidence 999999865 99999986421 12 223444555555543321 234679999999999999953
Q ss_pred H-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEec
Q 000746 781 N-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEG 821 (1303)
Q Consensus 781 ~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g 821 (1303)
. +.+++..+++|+|++||+++.+. .+|++++|++|++++.|
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 147 GDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 2 33444445799999999999885 59999999999998765
No 225
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.5e-26 Score=259.94 Aligned_cols=182 Identities=21% Similarity=0.295 Sum_probs=140.5
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CCCceEE--------------
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP-----LKDASVV-------------- 700 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~-----~~g~~~~-------------- 700 (1303)
.++++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+.++ ++|.+..
T Consensus 6 ~i~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 84 (253)
T PRK14261 6 ILSTKNLNLWYGE-KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVA 84 (253)
T ss_pred eEEEeeeEEEECC-eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhh
Confidence 5899999999964 4699999999999999999999999999999999998753 3563211
Q ss_pred EcCeEEEEccCcccccccHHHHHccCCCC----Chh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHH
Q 000746 701 IRGTVAYVPQISWIFNATLRKNILFGSEF----DPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQR 772 (1303)
Q Consensus 701 ~~~~iayv~Q~p~l~~~TireNI~~g~~~----~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQR 772 (1303)
.++.++|++|++.+|+.|++||+.++... +.. +..++++..++.+ +..+..+..+.+||||||||
T Consensus 85 ~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~~qr 157 (253)
T PRK14261 85 LRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWD-------EVKDRLHDSALSLSGGQQQR 157 (253)
T ss_pred hhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCch-------hhHHHhhcChhhCCHHHHHH
Confidence 13469999999999999999999986431 111 1222333333322 22234567788999999999
Q ss_pred HHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHh
Q 000746 773 VSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 773 iaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
++||||++. +.+....+++|+|++||+++.+. .||++++|++|++++.|+.+++.+
T Consensus 158 v~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 237 (253)
T PRK14261 158 LCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFE 237 (253)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHHh
Confidence 999999542 33444445689999999999885 699999999999999999988764
Q ss_pred c
Q 000746 829 H 829 (1303)
Q Consensus 829 ~ 829 (1303)
.
T Consensus 238 ~ 238 (253)
T PRK14261 238 N 238 (253)
T ss_pred C
Confidence 3
No 226
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3.4e-26 Score=258.25 Aligned_cols=183 Identities=22% Similarity=0.324 Sum_probs=142.4
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCCCceEE-------------
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP-----PLKDASVV------------- 700 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~-----~~~g~~~~------------- 700 (1303)
+.++++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|.+..
T Consensus 9 ~~l~i~~v~~~~~~-~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 9 TVLRTENLNVYYGS-FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred eEEEEeeeEEEECC-EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 35899999999975 379999999999999999999999999999999999876 35663321
Q ss_pred -EcCeEEEEccCcccccccHHHHHccCCCC---C---hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHH
Q 000746 701 -IRGTVAYVPQISWIFNATLRKNILFGSEF---D---PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRV 773 (1303)
Q Consensus 701 -~~~~iayv~Q~p~l~~~TireNI~~g~~~---~---~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRi 773 (1303)
.++.++|++|++.+++.|++||+.++... . +++..++++.+++.+++. ......+.+||||||||+
T Consensus 88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~qrv 160 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVK-------DKLKQSGLSLSGGQQQRL 160 (264)
T ss_pred HHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHH-------HHhcCCcccCCHHHHHHH
Confidence 13469999999999988999999876421 1 123344455555544332 123456778999999999
Q ss_pred HHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCcc-cccCEEEEEe---------CCEEEEe
Q 000746 774 SMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFL-PHVDRIILVS---------EGMIKEE 820 (1303)
Q Consensus 774 aLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l-~~aD~ii~l~---------~G~i~~~ 820 (1303)
+||||++. +.+.+..+++|+|++||+++.+ ..||+|++|+ +|++++.
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~ 240 (264)
T PRK14243 161 CIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEF 240 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 99999642 3344444568999999999986 4689999998 8999999
Q ss_pred cCHHHHHhc
Q 000746 821 GSFEELSKH 829 (1303)
Q Consensus 821 g~~~~l~~~ 829 (1303)
|+++++.+.
T Consensus 241 ~~~~~~~~~ 249 (264)
T PRK14243 241 DRTEKIFNS 249 (264)
T ss_pred CCHHHHHhC
Confidence 999998653
No 227
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=2.7e-26 Score=250.80 Aligned_cols=166 Identities=25% Similarity=0.387 Sum_probs=130.0
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc-----------CeEEEEc
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR-----------GTVAYVP 709 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~-----------~~iayv~ 709 (1303)
|+++|++++|++. . .|+||++++||+++|+||||||||||+++|+|+++|++|.+ .+. ..++|++
T Consensus 1 i~~~~l~~~~~~~-~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i-~~~g~~~~~~~~~~~~i~~~~ 76 (211)
T cd03298 1 VRLDKIRFSYGEQ-P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV-LINGVDVTAAPPADRPVSMLF 76 (211)
T ss_pred CEEEeEEEEeCCE-e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEEcCcCCHhHccEEEEe
Confidence 4689999999743 2 39999999999999999999999999999999999998743 332 3599999
Q ss_pred cCcccccc-cHHHHHccCCC--C-----ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH
Q 000746 710 QISWIFNA-TLRKNILFGSE--F-----DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN 781 (1303)
Q Consensus 710 Q~p~l~~~-TireNI~~g~~--~-----~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~ 781 (1303)
|++.++.+ |++||+.++.. . ++++..++++.+++.+..+.. ..+||||||||++||||++.
T Consensus 77 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~ia~al~~ 145 (211)
T cd03298 77 QENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRL-----------PGELSGGERQRVALARVLVR 145 (211)
T ss_pred cccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCC-----------cccCCHHHHHHHHHHHHHhc
Confidence 99999864 99999987532 1 133455566666655443332 35799999999999999542
Q ss_pred -----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEec
Q 000746 782 -----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEG 821 (1303)
Q Consensus 782 -----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g 821 (1303)
+.+.+.. .++|+|++||+++.+. .||++++|++|++++.|
T Consensus 146 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 146 DKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 2344332 3789999999999875 49999999999998754
No 228
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.94 E-value=2.1e-26 Score=266.21 Aligned_cols=182 Identities=19% Similarity=0.279 Sum_probs=139.6
Q ss_pred CcEEEEeeEEEeCC------------CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------
Q 000746 639 PAVSIKNGNFSWDS------------KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------ 700 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~------------~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------ 700 (1303)
+.++++|++++|+. ..++++|+||+|++||+++|+|+||||||||+++|+|+++|++|.+..
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~ 86 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLL 86 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECC
Confidence 46899999999963 135899999999999999999999999999999999999998874321
Q ss_pred ---------EcCeEEEEccCc--ccc-cccHHHHHccCC-----CCChhhH----HHHHHHHhhHHHhhcCCCCCCcccc
Q 000746 701 ---------IRGTVAYVPQIS--WIF-NATLRKNILFGS-----EFDPAKY----WKTVDVSALQHDLDLLPDRDLTEIG 759 (1303)
Q Consensus 701 ---------~~~~iayv~Q~p--~l~-~~TireNI~~g~-----~~~~~~~----~~vl~~~~l~~~i~~lp~g~~T~ig 759 (1303)
.+++|+||+|+| .++ ..||.|||.++. ..++++. .+.++..++.++ ...
T Consensus 87 ~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~----------~~~ 156 (331)
T PRK15079 87 GMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPN----------LIN 156 (331)
T ss_pred cCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChH----------Hhc
Confidence 135799999999 365 579999997531 2333322 233333333211 223
Q ss_pred CCCCCCchHHHHHHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEe
Q 000746 760 ERGVNISGGQKQRVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVS 813 (1303)
Q Consensus 760 e~G~~LSGGQkQRiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~ 813 (1303)
....+||||||||++||||+.. +.+.+.. .+.|+|+|||+++.+. .||+|++|+
T Consensus 157 ~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~ 236 (331)
T PRK15079 157 RYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMY 236 (331)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 4567899999999999999642 2333332 3789999999999986 599999999
Q ss_pred CCEEEEecCHHHHHhcc
Q 000746 814 EGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 814 ~G~i~~~g~~~~l~~~~ 830 (1303)
+|+|++.|+.+++.++.
T Consensus 237 ~G~ive~g~~~~i~~~~ 253 (331)
T PRK15079 237 LGHAVELGTYDEVYHNP 253 (331)
T ss_pred CCEEEEEcCHHHHHcCC
Confidence 99999999999987653
No 229
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.94 E-value=1.9e-26 Score=252.38 Aligned_cols=165 Identities=31% Similarity=0.510 Sum_probs=127.9
Q ss_pred EEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc--------CeEEEEccCccc
Q 000746 643 IKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR--------GTVAYVPQISWI 714 (1303)
Q Consensus 643 ~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~--------~~iayv~Q~p~l 714 (1303)
++|++++|++ .++++|+||+|++||+++|+||||||||||+++|.|+++|++|. +.++ ..++|++|+|.+
T Consensus 2 ~~~l~~~~~~-~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~-i~~~g~~~~~~~~~i~~v~q~~~~ 79 (213)
T cd03235 2 VEDLTVSYGG-HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGS-IRVFGKPLEKERKRIGYVPQRRSI 79 (213)
T ss_pred cccceeEECC-EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCE-EEECCccHHHHHhheEEecccccc
Confidence 6789999975 46999999999999999999999999999999999999999874 4443 459999999976
Q ss_pred ---ccccHHHHHccCCCC-----------ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH
Q 000746 715 ---FNATLRKNILFGSEF-----------DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF 780 (1303)
Q Consensus 715 ---~~~TireNI~~g~~~-----------~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~ 780 (1303)
++.|++||+.++... ++++..++++..++.+..+ ....+||||||||++||||+.
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la~al~ 148 (213)
T cd03235 80 DRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELAD-----------RQIGELSGGQQQRVLLARALV 148 (213)
T ss_pred ccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHh-----------CCcccCCHHHHHHHHHHHHHH
Confidence 568999999875421 1233445555555543332 234679999999999999954
Q ss_pred H-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEec
Q 000746 781 N-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEG 821 (1303)
Q Consensus 781 ~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g 821 (1303)
. +.+.+.. +++|+|++||+++.+. .||++++|++| +++.|
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 149 QDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 2 2333332 5789999999999875 58999999886 55543
No 230
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.94 E-value=3e-26 Score=256.04 Aligned_cols=186 Identities=19% Similarity=0.322 Sum_probs=139.9
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----E---------cCeEE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----I---------RGTVA 706 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----~---------~~~ia 706 (1303)
.++++|+++.|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+.. + +..++
T Consensus 2 ~i~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (242)
T TIGR03411 2 ILYLEGLSVSFDG-FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG 80 (242)
T ss_pred eEEEEeeEEEcCC-eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee
Confidence 4789999999975 46999999999999999999999999999999999999999874321 1 23599
Q ss_pred EEccCcccccc-cHHHHHccCCCCChhh------HHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHH
Q 000746 707 YVPQISWIFNA-TLRKNILFGSEFDPAK------YWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAV 779 (1303)
Q Consensus 707 yv~Q~p~l~~~-TireNI~~g~~~~~~~------~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl 779 (1303)
|++|++.++.+ |++||+.++...+... ...........+.++.+ |.+........+||||||||++||||+
T Consensus 81 ~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~laral 158 (242)
T TIGR03411 81 RKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGMLL 158 (242)
T ss_pred EeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 99999999976 9999998764211000 00000011122223322 223334456678999999999999995
Q ss_pred HH-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHh
Q 000746 780 FN-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 780 ~~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
+. +.+.+..+++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 159 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 159 MQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred hcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 42 33444445789999999999986 599999999999999999988764
No 231
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.94 E-value=4.9e-26 Score=257.13 Aligned_cols=175 Identities=23% Similarity=0.407 Sum_probs=135.4
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCC--CceEEE----------------
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLK--DASVVI---------------- 701 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~--g~~~~~---------------- 701 (1303)
.++++|+++.|++ .++++|+||++++||+++|+||||||||||+++|+|+++|++ +|.+.+
T Consensus 4 ~l~~~nl~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (262)
T PRK09984 4 IIRVEKLAKTFNQ-HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIR 82 (262)
T ss_pred EEEEeeEEEEeCC-eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHH
Confidence 5899999999974 479999999999999999999999999999999999998864 123322
Q ss_pred --cCeEEEEccCccccc-ccHHHHHccCCCC------------C---hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCC
Q 000746 702 --RGTVAYVPQISWIFN-ATLRKNILFGSEF------------D---PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGV 763 (1303)
Q Consensus 702 --~~~iayv~Q~p~l~~-~TireNI~~g~~~------------~---~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~ 763 (1303)
+..++|++|++.++. .|++||+.++... + +++..++++..++.+ .......
T Consensus 83 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~ 151 (262)
T PRK09984 83 KSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVH-----------FAHQRVS 151 (262)
T ss_pred HHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHH-----------HHhCCcc
Confidence 235899999999886 5999999876310 1 112233333333322 2234556
Q ss_pred CCchHHHHHHHHHHHHH-----------------------HHHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEeCCEE
Q 000746 764 NISGGQKQRVSMARAVF-----------------------NSCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMI 817 (1303)
Q Consensus 764 ~LSGGQkQRiaLARAl~-----------------------~~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~~G~i 817 (1303)
+||||||||++||||+. .+.+.+.. +++|+|++||+++.+ ..||+|++|++|++
T Consensus 152 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i 231 (262)
T PRK09984 152 TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHV 231 (262)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 89999999999999953 23344443 379999999999975 56999999999999
Q ss_pred EEecCHHHH
Q 000746 818 KEEGSFEEL 826 (1303)
Q Consensus 818 ~~~g~~~~l 826 (1303)
.+.|+++++
T Consensus 232 ~~~g~~~~~ 240 (262)
T PRK09984 232 FYDGSSQQF 240 (262)
T ss_pred EEeCCHHHh
Confidence 999999986
No 232
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.94 E-value=5.1e-26 Score=255.93 Aligned_cols=176 Identities=27% Similarity=0.417 Sum_probs=138.9
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcCeEEEE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRGTVAYV 708 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~~iayv 708 (1303)
++++|+++.|++ .++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..++|+
T Consensus 3 l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (258)
T PRK13548 3 LEARNLSVRLGG-RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVL 81 (258)
T ss_pred EEEEeEEEEeCC-eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEE
Confidence 789999999975 46999999999999999999999999999999999999999874321 12459999
Q ss_pred ccCccc-ccccHHHHHccCCC-C--C----hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH
Q 000746 709 PQISWI-FNATLRKNILFGSE-F--D----PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF 780 (1303)
Q Consensus 709 ~Q~p~l-~~~TireNI~~g~~-~--~----~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~ 780 (1303)
+|++.+ ++.|++||+.++.. . + +++..++++..++.+. .......||||||||++||||+.
T Consensus 82 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGe~qrv~la~al~ 150 (258)
T PRK13548 82 PQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHL-----------AGRDYPQLSGGEQQRVQLARVLA 150 (258)
T ss_pred ccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhH-----------hcCCcccCCHHHHHHHHHHHHHh
Confidence 999987 57899999987632 1 1 1233344444444332 22345689999999999999998
Q ss_pred -------H----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHh
Q 000746 781 -------N----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 781 -------~----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
+ +.+.+.. +++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 151 ~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 151 QLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT 230 (258)
T ss_pred cccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence 2 1233332 4789999999999875 699999999999999999988764
No 233
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.94 E-value=3.1e-26 Score=253.56 Aligned_cols=171 Identities=23% Similarity=0.302 Sum_probs=133.4
Q ss_pred CcEEEEeeEEEeCCC---CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----E----------
Q 000746 639 PAVSIKNGNFSWDSK---SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----I---------- 701 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~---~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----~---------- 701 (1303)
+.++++|++++|+++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|.+.. +
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 358999999999753 25899999999999999999999999999999999999999875321 1
Q ss_pred --cCeEEEEccCccccc-ccHHHHHccCC---CCC----hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHH
Q 000746 702 --RGTVAYVPQISWIFN-ATLRKNILFGS---EFD----PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQ 771 (1303)
Q Consensus 702 --~~~iayv~Q~p~l~~-~TireNI~~g~---~~~----~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQ 771 (1303)
+..++|++|+|.++. .|++||+.++. ..+ +++..+.++.+++.+.++. ...+|||||||
T Consensus 85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Ge~q 153 (228)
T PRK10584 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDH-----------LPAQLSGGEQQ 153 (228)
T ss_pred HHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhC-----------ChhhCCHHHHH
Confidence 136999999999886 59999998642 112 2334455555555443332 33579999999
Q ss_pred HHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCcccccCEEEEEeCCEEEEe
Q 000746 772 RVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLPHVDRIILVSEGMIKEE 820 (1303)
Q Consensus 772 RiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~ 820 (1303)
|++||||+.. +.+.+.. .++|+|++||+++.+..||++++|++|+++++
T Consensus 154 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 154 RVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 9999999642 2344432 37899999999999888999999999999764
No 234
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.94 E-value=2.4e-26 Score=260.17 Aligned_cols=179 Identities=22% Similarity=0.347 Sum_probs=138.0
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE---------------EcC
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV---------------IRG 703 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~---------------~~~ 703 (1303)
..++++|+++.|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+.. .+.
T Consensus 6 ~~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 6 NLVDMRGVSFTRGN-RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred ceEEEeCeEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 35899999999964 46999999999999999999999999999999999999999874321 123
Q ss_pred eEEEEccCcccccc-cHHHHHccCC----CCChh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHH
Q 000746 704 TVAYVPQISWIFNA-TLRKNILFGS----EFDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVS 774 (1303)
Q Consensus 704 ~iayv~Q~p~l~~~-TireNI~~g~----~~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRia 774 (1303)
.++|++|++.++.. |++||+.++. ..+.+ +..+.++..++.+ .......+||||||||++
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgGq~qrv~ 153 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRG-----------AAKLMPSELSGGMARRAA 153 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCCHHHHHHHH
Confidence 59999999999875 9999998642 12222 1222233332221 122344689999999999
Q ss_pred HHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHh
Q 000746 775 MARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 775 LARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
||||++. +.+.+.. .++|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 154 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 233 (269)
T PRK11831 154 LARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhc
Confidence 9999642 2344432 3789999999998875 599999999999999999999875
Q ss_pred c
Q 000746 829 H 829 (1303)
Q Consensus 829 ~ 829 (1303)
.
T Consensus 234 ~ 234 (269)
T PRK11831 234 N 234 (269)
T ss_pred C
Confidence 4
No 235
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.94 E-value=2.1e-26 Score=253.76 Aligned_cols=175 Identities=25% Similarity=0.408 Sum_probs=134.9
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcCeEE
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRGTVA 706 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~~ia 706 (1303)
+.++++|+++.|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|.+.. .+..++
T Consensus 6 ~~i~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 6 PLLQLQNVGYLAGD-AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred ceEEEeccEEeeCC-ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 35899999999974 46999999999999999999999999999999999999999874321 124699
Q ss_pred EEccCcccccccHHHHHccCCCC-----ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH
Q 000746 707 YVPQISWIFNATLRKNILFGSEF-----DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN 781 (1303)
Q Consensus 707 yv~Q~p~l~~~TireNI~~g~~~-----~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~ 781 (1303)
|++|++.+++.|++||+.++..+ ++++..+.++..++. ++.......+||||||||++||||++.
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALP----------DTILTKNIAELSGGEKQRISLIRNLQF 154 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCC----------hHHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999874221 122222333333221 123455677899999999999999642
Q ss_pred -----------------------HHHhHhc--CCCEEEEEecCCCcccccCEEEEEe-CCEEEEecCHH
Q 000746 782 -----------------------SCIKEEL--RGKTRILVTNQLHFLPHVDRIILVS-EGMIKEEGSFE 824 (1303)
Q Consensus 782 -----------------------~~i~~~~--~~~TvilvtH~~~~l~~aD~ii~l~-~G~i~~~g~~~ 824 (1303)
+.+.+.. .++|+|++||+++.++.||++++|+ ++..+++|+|+
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 2344433 3789999999999998999999994 66667778775
No 236
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=3.7e-26 Score=255.19 Aligned_cols=180 Identities=25% Similarity=0.371 Sum_probs=135.8
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------------E
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------------I 701 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------------~ 701 (1303)
.++++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .
T Consensus 2 ~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (242)
T PRK11124 2 SIQLNGINCFYGA-HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL 80 (242)
T ss_pred EEEEEeeEEEECC-eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence 3789999999975 47999999999999999999999999999999999999999874321 1
Q ss_pred cCeEEEEccCccccc-ccHHHHHccCC----CCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHH
Q 000746 702 RGTVAYVPQISWIFN-ATLRKNILFGS----EFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMA 776 (1303)
Q Consensus 702 ~~~iayv~Q~p~l~~-~TireNI~~g~----~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLA 776 (1303)
++.|+|+||+|.++. .|++|||.++. ..+.++..+ ...+.++.+ |.+........+||||||||++||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la 153 (242)
T PRK11124 81 RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALA-----RAEKLLERL--RLKPYADRFPLHLSGGQQQRVAIA 153 (242)
T ss_pred HhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHH
Confidence 235999999999886 59999997421 111111111 111222222 222334445578999999999999
Q ss_pred HHHHH-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHH
Q 000746 777 RAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELS 827 (1303)
Q Consensus 777 RAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~ 827 (1303)
||+.. +.+.+.. +++|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 154 ral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 229 (242)
T PRK11124 154 RALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT 229 (242)
T ss_pred HHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhc
Confidence 99542 2344333 4799999999999985 59999999999999999988764
No 237
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.94 E-value=2.2e-26 Score=268.16 Aligned_cols=163 Identities=28% Similarity=0.368 Sum_probs=128.6
Q ss_pred CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc---------------------CeEEEEccCcc
Q 000746 655 PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR---------------------GTVAYVPQISW 713 (1303)
Q Consensus 655 ~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~---------------------~~iayv~Q~p~ 713 (1303)
.+++|+||+|++||+++|+|+||||||||+++|.|+++|++|.+ .+. .+|+|++|++.
T Consensus 38 ~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I-~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 38 VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSV-LVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE-EECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 57999999999999999999999999999999999999998743 221 36999999999
Q ss_pred ccc-ccHHHHHccCCC---CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH----
Q 000746 714 IFN-ATLRKNILFGSE---FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN---- 781 (1303)
Q Consensus 714 l~~-~TireNI~~g~~---~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~---- 781 (1303)
+|+ .|++||+.++.. .++ ++..++++..+|.+.. .....+||||||||++||||+..
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~-----------~~~~~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWA-----------DKKPGELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 996 799999998742 222 2333444444443322 23345799999999999999542
Q ss_pred -------------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 782 -------------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 782 -------------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
+.+.+.. .++|+|+|||+++.+ +.+|+|++|++|++++.|+++++..+
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 2333332 379999999999985 67999999999999999999999754
No 238
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=2.7e-26 Score=269.46 Aligned_cols=164 Identities=24% Similarity=0.350 Sum_probs=128.8
Q ss_pred CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----E------------cCeEEEEccCccccc-c
Q 000746 655 PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----I------------RGTVAYVPQISWIFN-A 717 (1303)
Q Consensus 655 ~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----~------------~~~iayv~Q~p~l~~-~ 717 (1303)
++|+|+||+|++||+++|+||||||||||+++|.|+++|++|.+.. + +.+++|++|++.+|. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 3799999999999999999999999999999999999999874321 0 236999999999985 6
Q ss_pred cHHHHHccCCC---CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH---------
Q 000746 718 TLRKNILFGSE---FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN--------- 781 (1303)
Q Consensus 718 TireNI~~g~~---~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~--------- 781 (1303)
|++|||.++.. ++. ++..++++.++|.+.. .....+||||||||++||||+..
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~-----------~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYA-----------HSYPDELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhh-----------hcCcccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99999997632 222 2334445555443332 23346899999999999999532
Q ss_pred --------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 782 --------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 782 --------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
+.+.+.. .++|+|++||+++.+ ..||+|++|++|++++.|+++++..+
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~ 255 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN 255 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhC
Confidence 3344432 479999999999986 56999999999999999999998764
No 239
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.94 E-value=1.2e-26 Score=257.21 Aligned_cols=175 Identities=29% Similarity=0.472 Sum_probs=135.9
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-------------EcCeEEE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-------------IRGTVAY 707 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-------------~~~~iay 707 (1303)
++++|+++.|++ .++|+|+||++++||+++|+|+||||||||+++|.|+++|.+|.+.. .+..++|
T Consensus 1 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (230)
T TIGR03410 1 LEVSNLNVYYGQ-SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAY 79 (230)
T ss_pred CEEEeEEEEeCC-eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEE
Confidence 468999999975 47999999999999999999999999999999999999999874321 1235999
Q ss_pred EccCcccccc-cHHHHHccCCC-CC---hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-
Q 000746 708 VPQISWIFNA-TLRKNILFGSE-FD---PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN- 781 (1303)
Q Consensus 708 v~Q~p~l~~~-TireNI~~g~~-~~---~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~- 781 (1303)
++|++.++.. |++||+.++.. .. ++...++++..+. ..........+||||||||++||||+..
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~----------l~~~~~~~~~~LS~G~~qrv~la~al~~~ 149 (230)
T TIGR03410 80 VPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPV----------LKEMLGRRGGDLSGGQQQQLAIARALVTR 149 (230)
T ss_pred eccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHh----------HHHHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999875 99999987642 21 1122233332221 1122334566899999999999999642
Q ss_pred ----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHH
Q 000746 782 ----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEEL 826 (1303)
Q Consensus 782 ----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l 826 (1303)
+.+.+.. .++|+|++||+++.+. .||+|+++++|++++.|+++++
T Consensus 150 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 150 PKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 2344433 2789999999999987 5999999999999999999887
No 240
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.94 E-value=4.6e-26 Score=255.89 Aligned_cols=181 Identities=28% Similarity=0.361 Sum_probs=137.6
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-------------------
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------------- 700 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------------- 700 (1303)
.++++|++++|++ .++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+..
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (250)
T PRK11264 3 AIEVKNLVKKFHG-QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR 81 (250)
T ss_pred cEEEeceEEEECC-eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence 4789999999974 46999999999999999999999999999999999999998874321
Q ss_pred -EcCeEEEEccCccccc-ccHHHHHccCC----CCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHH
Q 000746 701 -IRGTVAYVPQISWIFN-ATLRKNILFGS----EFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVS 774 (1303)
Q Consensus 701 -~~~~iayv~Q~p~l~~-~TireNI~~g~----~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRia 774 (1303)
.+..++|++|++.++. .|++||+.++. ..+.++..+.+ .+.++.+ |..........+||||||||++
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~l~~~--gl~~~~~~~~~~LS~Gq~qrv~ 154 (250)
T PRK11264 82 QLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARA-----RELLAKV--GLAGKETSYPRRLSGGQQQRVA 154 (250)
T ss_pred HhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHH-----HHHHHHc--CCcchhhCChhhCChHHHHHHH
Confidence 1246999999999885 79999998642 12221111111 1122222 2222234566789999999999
Q ss_pred HHHHHHH-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHh
Q 000746 775 MARAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 775 LARAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
||||+.. +.+.+.. +++|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 155 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 233 (250)
T PRK11264 155 IARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFA 233 (250)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 9999542 2333333 4789999999999875 599999999999999999998764
No 241
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.9e-26 Score=255.93 Aligned_cols=181 Identities=20% Similarity=0.338 Sum_probs=138.6
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-------------EcCeEE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-------------IRGTVA 706 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-------------~~~~ia 706 (1303)
.++++|+++.|++ .++|+|+||++++|++++|+||||||||||+++|.|+++|++|.+.. .+..++
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (241)
T PRK10895 3 TLTAKNLAKAYKG-RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIG 81 (241)
T ss_pred eEEEeCcEEEeCC-EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeE
Confidence 4789999999974 47999999999999999999999999999999999999999874321 124699
Q ss_pred EEccCccccc-ccHHHHHccCCCC----ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH
Q 000746 707 YVPQISWIFN-ATLRKNILFGSEF----DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN 781 (1303)
Q Consensus 707 yv~Q~p~l~~-~TireNI~~g~~~----~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~ 781 (1303)
|++|++.++. .|++||+.++... ++++.++ ...+.++.+ |.+.........||||||||++||||+..
T Consensus 82 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~ 154 (241)
T PRK10895 82 YLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQRED-----RANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARALAA 154 (241)
T ss_pred EeccCCcccccCcHHHHHhhhhhcccccCHHHHHH-----HHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHHhc
Confidence 9999998886 5999999875321 2221111 112223333 22333455667899999999999999542
Q ss_pred -----------------------HHHhHhc-CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHh
Q 000746 782 -----------------------SCIKEEL-RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 782 -----------------------~~i~~~~-~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
+.+.... +++|+|++||+++.+ ..||++++|++|++++.|+++++.+
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 155 NPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 2333332 489999999999765 5699999999999999999998764
No 242
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.94 E-value=2.6e-26 Score=252.98 Aligned_cols=167 Identities=23% Similarity=0.399 Sum_probs=128.9
Q ss_pred EEEEeeEEEeCCC---CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----E------------
Q 000746 641 VSIKNGNFSWDSK---SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----I------------ 701 (1303)
Q Consensus 641 i~~~~~~f~~~~~---~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----~------------ 701 (1303)
++++|++++|++. .++++|+||++++|++++|+||||||||||+++|+|+++|.+|.... +
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 6889999999642 36999999999999999999999999999999999999999875321 0
Q ss_pred cCeEEEEccCccccc-ccHHHHHccCC---CCChh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHH
Q 000746 702 RGTVAYVPQISWIFN-ATLRKNILFGS---EFDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRV 773 (1303)
Q Consensus 702 ~~~iayv~Q~p~l~~-~TireNI~~g~---~~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRi 773 (1303)
+..++|++|++.++. .|++||+.++. .++.+ +..+.++..++. .........||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLE-----------HRINHRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-----------hhhhCChhhCCHHHHHHH
Confidence 146999999999884 69999998742 12221 223333333332 223344578999999999
Q ss_pred HHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCcccccCEEEEEeCCEEE
Q 000746 774 SMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLPHVDRIILVSEGMIK 818 (1303)
Q Consensus 774 aLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~~aD~ii~l~~G~i~ 818 (1303)
+||||++. +.+.+.. .++|+|++||+++.+..+|++++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999542 3344432 378999999999998889999999999985
No 243
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3.2e-26 Score=260.94 Aligned_cols=184 Identities=24% Similarity=0.319 Sum_probs=139.9
Q ss_pred CCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCCCceEE------------
Q 000746 638 LPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP-----PLKDASVV------------ 700 (1303)
Q Consensus 638 ~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~-----~~~g~~~~------------ 700 (1303)
.+.++++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+.+ |++|.+..
T Consensus 37 ~~~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 37 KPHVVAKNFSIYYGE-FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred ceEEEEeeeEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 346899999999975 369999999999999999999999999999999999854 36763211
Q ss_pred --EcCeEEEEccCcccccccHHHHHccCCC---C-Chh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHH
Q 000746 701 --IRGTVAYVPQISWIFNATLRKNILFGSE---F-DPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQK 770 (1303)
Q Consensus 701 --~~~~iayv~Q~p~l~~~TireNI~~g~~---~-~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQk 770 (1303)
.++.++|++|+|.++..|++|||.++.. . +++ +..++++..++.+.+ ..........||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgGq~ 188 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEV-------SDRLDKNALGLSGGQQ 188 (286)
T ss_pred HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccch-------hhHhhCChhhCCHHHH
Confidence 1346999999999998899999997632 1 111 122233333322111 1123456678999999
Q ss_pred HHHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHH
Q 000746 771 QRVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEEL 826 (1303)
Q Consensus 771 QRiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l 826 (1303)
||++||||++. +.+++..+++|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus 189 qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~ 268 (286)
T PRK14275 189 QRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQL 268 (286)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999542 34444445689999999999975 5999999999999999999988
Q ss_pred Hhc
Q 000746 827 SKH 829 (1303)
Q Consensus 827 ~~~ 829 (1303)
.++
T Consensus 269 ~~~ 271 (286)
T PRK14275 269 FTN 271 (286)
T ss_pred HhC
Confidence 653
No 244
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.94 E-value=3.9e-26 Score=258.11 Aligned_cols=187 Identities=25% Similarity=0.375 Sum_probs=139.8
Q ss_pred cEEEEeeEEEeCC--------CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-----------
Q 000746 640 AVSIKNGNFSWDS--------KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----------- 700 (1303)
Q Consensus 640 ~i~~~~~~f~~~~--------~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----------- 700 (1303)
.++++|+++.|+. +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 3789999999963 346999999999999999999999999999999999999999874321
Q ss_pred ----EcCeEEEEccCcc--cc-cccHHHHHccCC----CCCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCC
Q 000746 701 ----IRGTVAYVPQISW--IF-NATLRKNILFGS----EFDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNI 765 (1303)
Q Consensus 701 ----~~~~iayv~Q~p~--l~-~~TireNI~~g~----~~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~L 765 (1303)
.++.|+|++|+|. ++ +.|++|||.++. .++. ++..++++..++.+ ........+|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~L 151 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS----------EDADKLPRQL 151 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCChhhC
Confidence 1236999999983 43 579999996532 1222 12222333322211 1234566789
Q ss_pred chHHHHHHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEE
Q 000746 766 SGGQKQRVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKE 819 (1303)
Q Consensus 766 SGGQkQRiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~ 819 (1303)
|||||||++||||++. +.+.+.. .++|+|++||+++.+. .||++++|++|++++
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE
Confidence 9999999999999642 2344433 2799999999999986 699999999999999
Q ss_pred ecCHHHHHhc-chHHHHH
Q 000746 820 EGSFEELSKH-GRLFQKL 836 (1303)
Q Consensus 820 ~g~~~~l~~~-~~~~~~l 836 (1303)
.|+++++... ++.++.+
T Consensus 232 ~g~~~~~~~~~~~~~~~~ 249 (265)
T TIGR02769 232 ECDVAQLLSFKHPAGRNL 249 (265)
T ss_pred ECCHHHHcCCCCHHHHHH
Confidence 9999998763 3334434
No 245
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.94 E-value=3e-26 Score=253.84 Aligned_cols=174 Identities=26% Similarity=0.343 Sum_probs=129.7
Q ss_pred EEEEeeEEEeCCC---CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE---------------Ec
Q 000746 641 VSIKNGNFSWDSK---SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV---------------IR 702 (1303)
Q Consensus 641 i~~~~~~f~~~~~---~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~---------------~~ 702 (1303)
++++|++++|++. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .+
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 6899999999754 26999999999999999999999999999999999999999874321 12
Q ss_pred CeEEEEccCcc--cc-cccHHHHHccCCC-----CChhhHHHHHHHHhhHHHhhcCCCCC-CccccCCCCCCchHHHHHH
Q 000746 703 GTVAYVPQISW--IF-NATLRKNILFGSE-----FDPAKYWKTVDVSALQHDLDLLPDRD-LTEIGERGVNISGGQKQRV 773 (1303)
Q Consensus 703 ~~iayv~Q~p~--l~-~~TireNI~~g~~-----~~~~~~~~vl~~~~l~~~i~~lp~g~-~T~ige~G~~LSGGQkQRi 773 (1303)
+.++|++|+|. ++ +.|++||+.++.. .+++...++. .+.++.+ |. .........+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-----LLLLVGV--GLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHH-----HHHHHHC--CCChhHhhCCchhcCHHHHHHH
Confidence 46999999993 44 5799999976421 1111111111 1222222 22 1234556678999999999
Q ss_pred HHHHHHHH-----------------------HHHhHhcC--CCEEEEEecCCCccc-ccCEEEEEeCCEEEEec
Q 000746 774 SMARAVFN-----------------------SCIKEELR--GKTRILVTNQLHFLP-HVDRIILVSEGMIKEEG 821 (1303)
Q Consensus 774 aLARAl~~-----------------------~~i~~~~~--~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g 821 (1303)
+||||++. +.+.+..+ ++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 99999542 33444332 789999999999877 69999999999998764
No 246
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.94 E-value=1.4e-26 Score=253.76 Aligned_cols=165 Identities=26% Similarity=0.427 Sum_probs=128.2
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE---------------EcCeE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV---------------IRGTV 705 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~---------------~~~~i 705 (1303)
++++|+++.|+++.++|+|+||+|++|++++|+||||||||||+++|+|+++|.+|.+.. .++.+
T Consensus 2 l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (214)
T TIGR02673 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRI 81 (214)
T ss_pred EEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhhe
Confidence 689999999954457999999999999999999999999999999999999998875321 12469
Q ss_pred EEEccCccccc-ccHHHHHccCCC---CC----hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHH
Q 000746 706 AYVPQISWIFN-ATLRKNILFGSE---FD----PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMAR 777 (1303)
Q Consensus 706 ayv~Q~p~l~~-~TireNI~~g~~---~~----~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLAR 777 (1303)
+|++|+|.++. .|++||+.++.. .+ +++.++.++..++.+..+. ...+||||||||++|||
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~la~ 150 (214)
T TIGR02673 82 GVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADA-----------FPEQLSGGEQQRVAIAR 150 (214)
T ss_pred EEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHHHHHHH
Confidence 99999999885 699999987521 22 2334445555555433222 23579999999999999
Q ss_pred HHHH-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCE
Q 000746 778 AVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGM 816 (1303)
Q Consensus 778 Al~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~ 816 (1303)
|+.. +.+++.. +++|+|++||+++.+. .||++++|++|+
T Consensus 151 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 151 AIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 9542 2344432 4899999999999876 499999999985
No 247
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=5.2e-26 Score=255.52 Aligned_cols=183 Identities=22% Similarity=0.327 Sum_probs=140.5
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCC--C---CCCceEE-------------
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP--P---LKDASVV------------- 700 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~--~---~~g~~~~------------- 700 (1303)
+.++++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++ | ++|.+..
T Consensus 3 ~~l~~~nl~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 81 (252)
T PRK14256 3 NKVKLEQLNVHFGK-NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV 81 (252)
T ss_pred cEEEEEEEEEEeCC-eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChH
Confidence 45899999999974 469999999999999999999999999999999999986 4 4663211
Q ss_pred -EcCeEEEEccCccccc-ccHHHHHccCCC----CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHH
Q 000746 701 -IRGTVAYVPQISWIFN-ATLRKNILFGSE----FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQK 770 (1303)
Q Consensus 701 -~~~~iayv~Q~p~l~~-~TireNI~~g~~----~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQk 770 (1303)
.++.++|++|++.++. .|++||+.++.. .+. ++..+.++.+++.+.+. ...+....+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 154 (252)
T PRK14256 82 SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVK-------DRLKSNAMELSGGQQ 154 (252)
T ss_pred HhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcCcCCHHHH
Confidence 1346999999999887 699999986421 122 22334444444433221 123345678999999
Q ss_pred HHHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHH
Q 000746 771 QRVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEEL 826 (1303)
Q Consensus 771 QRiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l 826 (1303)
||++||||++. +.+++..+++|+|++||+++.+ ..||++++|++|++++.|+++++
T Consensus 155 qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14256 155 QRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKI 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999542 3444544678999999999987 46999999999999999999987
Q ss_pred Hhc
Q 000746 827 SKH 829 (1303)
Q Consensus 827 ~~~ 829 (1303)
...
T Consensus 235 ~~~ 237 (252)
T PRK14256 235 FTT 237 (252)
T ss_pred HhC
Confidence 643
No 248
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=2.2e-26 Score=255.12 Aligned_cols=176 Identities=28% Similarity=0.386 Sum_probs=138.2
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----------EcCeEEEEcc
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----------IRGTVAYVPQ 710 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----------~~~~iayv~Q 710 (1303)
++++|++++|++ .++++|+||++++|++++|+|+||||||||+++|+|+++|.+|.+.. .+..++|++|
T Consensus 1 l~~~~l~~~~~~-~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (232)
T cd03300 1 IELENVSKFYGG-FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQ 79 (232)
T ss_pred CEEEeEEEEeCC-eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEec
Confidence 468999999975 46999999999999999999999999999999999999998874321 1346999999
Q ss_pred Ccccccc-cHHHHHccCCC---CC----hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-
Q 000746 711 ISWIFNA-TLRKNILFGSE---FD----PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN- 781 (1303)
Q Consensus 711 ~p~l~~~-TireNI~~g~~---~~----~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~- 781 (1303)
++.++.+ |++||+.++.. .+ ++++.++++..++.+.++ ....+||||||||++||||++.
T Consensus 80 ~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~lS~G~~qrl~laral~~~ 148 (232)
T cd03300 80 NYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYAN-----------RKPSQLSGGQQQRVAIARALVNE 148 (232)
T ss_pred ccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHHHHHHHhcC
Confidence 9999864 99999986532 12 223344444444443332 3346899999999999999642
Q ss_pred ----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHh
Q 000746 782 ----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 782 ----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
+.+.+.. .++|+|++||+++.++ .||++++|++|++.+.|+++++.+
T Consensus 149 p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~ 220 (232)
T cd03300 149 PKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYE 220 (232)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHh
Confidence 2344433 2799999999999875 599999999999999999888764
No 249
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.94 E-value=4.1e-26 Score=253.60 Aligned_cols=176 Identities=31% Similarity=0.428 Sum_probs=136.9
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----------EcCeEEEEcc
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----------IRGTVAYVPQ 710 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----------~~~~iayv~Q 710 (1303)
++++|+++.|++ .++|+|+||++.+||+++|+||||||||||+++|+|+++|.+|.+.. .++.++|+||
T Consensus 1 i~i~~l~~~~~~-~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q 79 (237)
T TIGR00968 1 IEIANISKRFGS-FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQ 79 (237)
T ss_pred CEEEEEEEEECC-eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEec
Confidence 468999999975 46999999999999999999999999999999999999998874321 1356999999
Q ss_pred Ccccccc-cHHHHHccCCC---CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-
Q 000746 711 ISWIFNA-TLRKNILFGSE---FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN- 781 (1303)
Q Consensus 711 ~p~l~~~-TireNI~~g~~---~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~- 781 (1303)
+|.+|.+ |++||+.++.. .+. ++..++++..++.+. ......+||||||||++||||+..
T Consensus 80 ~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~lS~G~~qrl~laral~~~ 148 (237)
T TIGR00968 80 HYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGL-----------GDRYPNQLSGGQRQRVALARALAVE 148 (237)
T ss_pred ChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhH-----------hhCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999965 99999987643 121 122233333333221 233446899999999999999642
Q ss_pred ----------------------HHHhHhc-C-CCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHh
Q 000746 782 ----------------------SCIKEEL-R-GKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 782 ----------------------~~i~~~~-~-~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
+.+.+.. + ++|+|++||+++.+. .||++++|++|++++.|+.+++.+
T Consensus 149 p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 149 PQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220 (237)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence 2333332 2 799999999999865 599999999999999999998864
No 250
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=5.4e-26 Score=261.38 Aligned_cols=182 Identities=22% Similarity=0.357 Sum_probs=141.2
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCCCceEE-------------
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP-----PLKDASVV------------- 700 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~-----~~~g~~~~------------- 700 (1303)
..++++|+++.|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|.+..
T Consensus 44 ~~l~i~nl~~~~~~-~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~ 122 (305)
T PRK14264 44 AKLSVEDLDVYYGD-DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLV 122 (305)
T ss_pred ceEEEEEEEEEeCC-eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHH
Confidence 45899999999975 469999999999999999999999999999999999986 46764321
Q ss_pred -EcCeEEEEccCcccccccHHHHHccCCCC---------------C-----hhhHHHHHHHHhhHHHhhcCCCCCCcccc
Q 000746 701 -IRGTVAYVPQISWIFNATLRKNILFGSEF---------------D-----PAKYWKTVDVSALQHDLDLLPDRDLTEIG 759 (1303)
Q Consensus 701 -~~~~iayv~Q~p~l~~~TireNI~~g~~~---------------~-----~~~~~~vl~~~~l~~~i~~lp~g~~T~ig 759 (1303)
.++.++|++|++.+++.|++||+.++... + +++..++++.+++. ++..+...
T Consensus 123 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~ 195 (305)
T PRK14264 123 ELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALW-------DEVNDRLD 195 (305)
T ss_pred HHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCc-------hhhhHHhc
Confidence 12469999999999999999999976321 0 11233333333332 22334456
Q ss_pred CCCCCCchHHHHHHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEE-EEEeC
Q 000746 760 ERGVNISGGQKQRVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRI-ILVSE 814 (1303)
Q Consensus 760 e~G~~LSGGQkQRiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~i-i~l~~ 814 (1303)
....+||||||||++||||+.. +.+++..+++|+|++||+++.+. .||++ ++|++
T Consensus 196 ~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~ 275 (305)
T PRK14264 196 DNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTG 275 (305)
T ss_pred CccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecC
Confidence 7788999999999999999642 34445445689999999999975 59997 56799
Q ss_pred CEEEEecCHHHHHh
Q 000746 815 GMIKEEGSFEELSK 828 (1303)
Q Consensus 815 G~i~~~g~~~~l~~ 828 (1303)
|++++.|+++++.+
T Consensus 276 G~i~~~g~~~~~~~ 289 (305)
T PRK14264 276 GELVEYDDTDKIFE 289 (305)
T ss_pred CEEEEeCCHHHHHh
Confidence 99999999988764
No 251
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=5.7e-26 Score=255.52 Aligned_cols=176 Identities=23% Similarity=0.426 Sum_probs=137.9
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcCeEEEE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRGTVAYV 708 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~~iayv 708 (1303)
++++|++++|++ .++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. .++.++|+
T Consensus 3 l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (255)
T PRK11231 3 LRTENLTVGYGT-KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALL 81 (255)
T ss_pred EEEEeEEEEECC-EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEe
Confidence 789999999974 47999999999999999999999999999999999999999874321 12359999
Q ss_pred ccCcccccc-cHHHHHccCCC-----C---C---hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHH
Q 000746 709 PQISWIFNA-TLRKNILFGSE-----F---D---PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMA 776 (1303)
Q Consensus 709 ~Q~p~l~~~-TireNI~~g~~-----~---~---~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLA 776 (1303)
+|++.++.+ |+.||+.++.. + + +++..++++..++.+. .......||||||||++||
T Consensus 82 ~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la 150 (255)
T PRK11231 82 PQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHL-----------ADRRLTDLSGGQRQRAFLA 150 (255)
T ss_pred cccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHH-----------HcCCcccCCHHHHHHHHHH
Confidence 999988865 99999998631 1 1 1233344444444322 2234578999999999999
Q ss_pred HHHHH-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHh
Q 000746 777 RAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 777 RAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
||+.. +.+.+.. +++|+|++||+++.+. .+|++++|++|++++.|+++++..
T Consensus 151 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 151 MVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 99542 2333332 4789999999999865 699999999999999999988764
No 252
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.94 E-value=5e-26 Score=256.17 Aligned_cols=175 Identities=24% Similarity=0.362 Sum_probs=136.6
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-------------cCeEEE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-------------RGTVAY 707 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~-------------~~~iay 707 (1303)
++++|+++.|++ .++|+|+||++++||+++|+|+||||||||+++|+|.++|++|.+ .+ ++.++|
T Consensus 2 l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~~~~~i~~ 79 (256)
T TIGR03873 2 LRLSRVSWSAGG-RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTV-DLAGVDLHGLSRRARARRVAL 79 (256)
T ss_pred ceEEeEEEEECC-EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEE-EECCEEcccCCHHHHhhheEE
Confidence 678999999975 479999999999999999999999999999999999999998743 32 235999
Q ss_pred EccCcc-cccccHHHHHccCCC-C------C----hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHH
Q 000746 708 VPQISW-IFNATLRKNILFGSE-F------D----PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSM 775 (1303)
Q Consensus 708 v~Q~p~-l~~~TireNI~~g~~-~------~----~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaL 775 (1303)
++|++. .+..|++||+.++.. . . +++..++++..++.+ ........||||||||++|
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~l 148 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSH-----------LADRDMSTLSGGERQRVHV 148 (256)
T ss_pred ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHh-----------hhcCCcccCCHHHHHHHHH
Confidence 999985 457899999987631 1 0 112333444333322 2233556899999999999
Q ss_pred HHHHHH-----------------------HHHhHhc-CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHh
Q 000746 776 ARAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 776 ARAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
|||+.. +.+.+.. +++|+|++||+++.+ ..||+|++|++|++++.|+++++..
T Consensus 149 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 149 ARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 999532 2333332 478999999999998 5699999999999999999988754
No 253
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.94 E-value=2.6e-26 Score=251.67 Aligned_cols=166 Identities=25% Similarity=0.418 Sum_probs=128.2
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE---------------EcCeE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV---------------IRGTV 705 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~---------------~~~~i 705 (1303)
++++|+++.|+++.++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .++.+
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 468999999975457999999999999999999999999999999999999998874321 12359
Q ss_pred EEEccCccccc-ccHHHHHccCCC---CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHH
Q 000746 706 AYVPQISWIFN-ATLRKNILFGSE---FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMAR 777 (1303)
Q Consensus 706 ayv~Q~p~l~~-~TireNI~~g~~---~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLAR 777 (1303)
+|++|+|.++. .|++||+.++.. .+. ++..+.++.+++++..+ ....+||||||||++|||
T Consensus 81 ~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~lar 149 (214)
T cd03292 81 GVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHR-----------ALPAELSGGEQQRVAIAR 149 (214)
T ss_pred EEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-----------CChhhcCHHHHHHHHHHH
Confidence 99999999886 599999987532 122 23344444444443222 234579999999999999
Q ss_pred HHHH-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEE
Q 000746 778 AVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMI 817 (1303)
Q Consensus 778 Al~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i 817 (1303)
|++. +.+.+.. +++|+|++||+++.+. .||++++|++|++
T Consensus 150 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 150 AIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9642 2344432 4799999999999987 4899999999974
No 254
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3.3e-26 Score=256.94 Aligned_cols=182 Identities=23% Similarity=0.346 Sum_probs=141.9
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCC-----CCCCceEE--------------
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP-----PLKDASVV-------------- 700 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~-----~~~g~~~~-------------- 700 (1303)
.++++|+++.|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|.+..
T Consensus 3 ~l~~~~v~~~~~~-~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 81 (250)
T PRK14266 3 RIEVENLNTYFDD-AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVE 81 (250)
T ss_pred EEEEEeEEEEeCC-eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHH
Confidence 3789999999974 469999999999999999999999999999999999864 36664321
Q ss_pred EcCeEEEEccCcccccccHHHHHccCCC----CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHH
Q 000746 701 IRGTVAYVPQISWIFNATLRKNILFGSE----FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQR 772 (1303)
Q Consensus 701 ~~~~iayv~Q~p~l~~~TireNI~~g~~----~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQR 772 (1303)
.++.++|+||+|++|+.|++||+.++.. .++ +++.+.++.+++.+++.. .....+.+||||||||
T Consensus 82 ~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~Gq~qr 154 (250)
T PRK14266 82 LRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKD-------KLDKSALGLSGGQQQR 154 (250)
T ss_pred HhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHH-------HHhCCcccCCHHHHHH
Confidence 1346999999999999999999987521 122 234445555565544332 1345677899999999
Q ss_pred HHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCcccc-cCEEEEEeCCEEEEecCHHHHHh
Q 000746 773 VSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLPH-VDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 773 iaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~~-aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
++||||+.. +.+.+..+++|+|++||+++.+.. +|++++|++|++++.|+++++..
T Consensus 155 v~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~~ 234 (250)
T PRK14266 155 LCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFI 234 (250)
T ss_pred HHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHHh
Confidence 999999542 334444467899999999998655 89999999999999999998864
Q ss_pred c
Q 000746 829 H 829 (1303)
Q Consensus 829 ~ 829 (1303)
.
T Consensus 235 ~ 235 (250)
T PRK14266 235 N 235 (250)
T ss_pred C
Confidence 3
No 255
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=5.6e-26 Score=252.20 Aligned_cols=175 Identities=28% Similarity=0.454 Sum_probs=138.0
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-----------cCeEEEEc
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-----------RGTVAYVP 709 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~-----------~~~iayv~ 709 (1303)
++++|+++.|++ ++++|+||+|++||+++|+|+||||||||+++|.|.++|++|.+ .+ +..++|++
T Consensus 1 l~~~~l~~~~~~--~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v-~i~g~~~~~~~~~~~~i~~~~ 77 (235)
T cd03299 1 LKVENLSKDWKE--FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKI-LLNGKDITNLPPEKRDISYVP 77 (235)
T ss_pred CeeEeEEEEeCC--ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEE-EECCEEcCcCChhHcCEEEEe
Confidence 468999999974 38999999999999999999999999999999999999998743 32 24699999
Q ss_pred cCcccc-cccHHHHHccCCCC---Ch----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH
Q 000746 710 QISWIF-NATLRKNILFGSEF---DP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN 781 (1303)
Q Consensus 710 Q~p~l~-~~TireNI~~g~~~---~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~ 781 (1303)
|++.+| ..|++||+.++... +. ++..+.++.+++.+.++ ....+||||||||++||||++.
T Consensus 78 q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~laral~~ 146 (235)
T cd03299 78 QNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLN-----------RKPETLSGGEQQRVAIARALVV 146 (235)
T ss_pred ecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHh-----------cCcccCCHHHHHHHHHHHHHHc
Confidence 999988 47999999875321 11 22344455555544332 3346799999999999999642
Q ss_pred -----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 782 -----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 782 -----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
+.+++.. .++|+|++||+++.++ .||++++|++|++++.|+++++.+.
T Consensus 147 ~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 147 NPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred CCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 2333332 2899999999999876 5999999999999999999887654
No 256
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.94 E-value=4.2e-26 Score=262.47 Aligned_cols=177 Identities=25% Similarity=0.385 Sum_probs=137.1
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-----------EcCeEEEE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-----------IRGTVAYV 708 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-----------~~~~iayv 708 (1303)
.++++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+.. .+..++|+
T Consensus 4 ~i~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v 82 (303)
T TIGR01288 4 AIDLVGVSKSYGD-KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVV 82 (303)
T ss_pred EEEEEeEEEEeCC-eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEE
Confidence 5899999999975 46999999999999999999999999999999999999999875431 13569999
Q ss_pred ccCcccc-cccHHHHHccCC---CCChhhH----HHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH
Q 000746 709 PQISWIF-NATLRKNILFGS---EFDPAKY----WKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF 780 (1303)
Q Consensus 709 ~Q~p~l~-~~TireNI~~g~---~~~~~~~----~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~ 780 (1303)
||++.++ +.|++||+.+.. ..++++. .+.++..+ +++..+ ....+||||||||++||||++
T Consensus 83 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~-------l~~~~~----~~~~~LSgG~~qrv~la~al~ 151 (303)
T TIGR01288 83 PQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFAR-------LESKAD----VRVALLSGGMKRRLTLARALI 151 (303)
T ss_pred eccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCC-------ChhHhc----CchhhCCHHHHHHHHHHHHHh
Confidence 9999888 569999997522 1232222 22222222 222223 334579999999999999954
Q ss_pred H-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHh
Q 000746 781 N-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 781 ~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
. +.+.+.. +++|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 152 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 152 NDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 2 2333332 5899999999999875 599999999999999999998864
No 257
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=3.6e-26 Score=249.59 Aligned_cols=168 Identities=23% Similarity=0.418 Sum_probs=130.0
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE---------cCeEEEEccC
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI---------RGTVAYVPQI 711 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~---------~~~iayv~Q~ 711 (1303)
++++|+++.|++ .++++|+||++++|++++|+||||||||||+++|+|+++|++|. +.+ +..++|++|+
T Consensus 1 l~~~~l~~~~~~-~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~i~~~~q~ 78 (210)
T cd03269 1 LEVENVTKRFGR-VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGE-VLFDGKPLDIAARNRIGYLPEE 78 (210)
T ss_pred CEEEEEEEEECC-EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCCchhHHHHccEEEeccC
Confidence 468999999964 46999999999999999999999999999999999999999874 433 3469999999
Q ss_pred ccccc-ccHHHHHccCCC---CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH--
Q 000746 712 SWIFN-ATLRKNILFGSE---FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN-- 781 (1303)
Q Consensus 712 p~l~~-~TireNI~~g~~---~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~-- 781 (1303)
+.++. .|++||+.++.. .+. ++..+.++..++. ........+||||||||++||||+..
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrl~la~al~~~p 147 (210)
T cd03269 79 RGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELS-----------EYANKRVEELSKGNQQKVQFIAAVIHDP 147 (210)
T ss_pred CcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCh-----------HHHhCcHhhCCHHHHHHHHHHHHHhcCC
Confidence 99886 599999987432 111 1223333333332 23344567899999999999999542
Q ss_pred ---------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEec
Q 000746 782 ---------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEG 821 (1303)
Q Consensus 782 ---------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g 821 (1303)
+.+++.. +++|+|++||+++.+. .||++++|++|++++.|
T Consensus 148 ~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 148 ELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 2333332 4789999999999875 59999999999998754
No 258
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=5.7e-26 Score=257.62 Aligned_cols=177 Identities=25% Similarity=0.363 Sum_probs=137.3
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE--------------EcCeEE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV--------------IRGTVA 706 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~--------------~~~~ia 706 (1303)
++++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|.|+++|++|.+.. .++.|+
T Consensus 2 l~~~~l~~~~~~-~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~ 80 (271)
T PRK13638 2 LATSDLWFRYQD-EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVA 80 (271)
T ss_pred eEEEEEEEEcCC-cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheE
Confidence 689999999974 46999999999999999999999999999999999999999874321 123599
Q ss_pred EEccCcc--cccccHHHHHccCC---CCChhh----HHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHH
Q 000746 707 YVPQISW--IFNATLRKNILFGS---EFDPAK----YWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMAR 777 (1303)
Q Consensus 707 yv~Q~p~--l~~~TireNI~~g~---~~~~~~----~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLAR 777 (1303)
|++|+|. ++..|+.||+.++. ..++++ ..++++..++.+. ......+||||||||++|||
T Consensus 81 ~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrl~lar 149 (271)
T PRK13638 81 TVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHF-----------RHQPIQCLSHGQKKRVAIAG 149 (271)
T ss_pred EEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhH-----------hcCCchhCCHHHHHHHHHHH
Confidence 9999985 56789999998742 122222 2333444444322 12345689999999999999
Q ss_pred HHHH-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 778 AVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 778 Al~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
|++. +.+.+.. +++|+|++||+++.+. .||++++|++|++++.|+++++...
T Consensus 150 aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 150 ALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9542 2333332 4789999999999874 5999999999999999999887654
No 259
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=5.3e-26 Score=253.09 Aligned_cols=182 Identities=24% Similarity=0.397 Sum_probs=137.4
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-------------EcCeEE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-------------IRGTVA 706 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-------------~~~~ia 706 (1303)
.++++|+++.|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|.+.. .+..++
T Consensus 5 ~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (237)
T PRK11614 5 MLSFDKVSAHYGK-IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVA 83 (237)
T ss_pred EEEEEeEEEeeCC-ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEE
Confidence 5899999999974 47999999999999999999999999999999999999998874321 123599
Q ss_pred EEccCccccc-ccHHHHHccCCCC-ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH---
Q 000746 707 YVPQISWIFN-ATLRKNILFGSEF-DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN--- 781 (1303)
Q Consensus 707 yv~Q~p~l~~-~TireNI~~g~~~-~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~--- 781 (1303)
|++|++.+|. .|++||+.++..+ +.++..+.++ +.++.++...+ ........||||||||++||||++.
T Consensus 84 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~l~~~~~l~~-~~~~~~~~LS~G~~qrl~la~al~~~p~ 157 (237)
T PRK11614 84 IVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIK-----WVYELFPRLHE-RRIQRAGTMSGGEQQMLAIGRALMSQPR 157 (237)
T ss_pred EeccCcccCCCCcHHHHHHHhhhccChhHHHHHHH-----HHHHHHHHHHH-HHhCchhhCCHHHHHHHHHHHHHHhCCC
Confidence 9999999987 5999999886432 2222222111 11111111111 1223456899999999999999642
Q ss_pred --------------------HHHhHhc-CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHh
Q 000746 782 --------------------SCIKEEL-RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 782 --------------------~~i~~~~-~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
+.+.+.. +++|+|++||+++.+ ..||++++|++|++++.|+++++..
T Consensus 158 illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 158 LLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 2343332 489999999999865 5699999999999999999998864
No 260
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=5.5e-26 Score=265.83 Aligned_cols=175 Identities=28% Similarity=0.425 Sum_probs=138.2
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----------------EcCe
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----------------IRGT 704 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----------------~~~~ 704 (1303)
+++ |++++|++. .+ |+||++++||+++|+||||||||||+++|+|+++|++|.+.. .++.
T Consensus 2 l~~-~l~k~~~~~--~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 77 (352)
T PRK11144 2 LEL-NFKQQLGDL--CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRR 77 (352)
T ss_pred eEE-EEEEEeCCE--EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCC
Confidence 456 899999642 23 999999999999999999999999999999999998874321 1346
Q ss_pred EEEEccCccccc-ccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-
Q 000746 705 VAYVPQISWIFN-ATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN- 781 (1303)
Q Consensus 705 iayv~Q~p~l~~-~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~- 781 (1303)
++|++|++.+|. .|++|||.++.. .++++..++++..++.+..+ ....+||||||||++||||+..
T Consensus 78 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qRvalaraL~~~ 146 (352)
T PRK11144 78 IGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLD-----------RYPGSLSGGEKQRVAIGRALLTA 146 (352)
T ss_pred EEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhh-----------CCcccCCHHHHHHHHHHHHHHcC
Confidence 999999999985 699999998743 33455566666665543333 3346899999999999999642
Q ss_pred ----------------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHhcc
Q 000746 782 ----------------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 782 ----------------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~~~ 830 (1303)
+.+++.. .++|+|+|||+++.+ ..||+|++|++|++++.|+++++..+.
T Consensus 147 p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 147 PELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220 (352)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence 2333333 278999999999876 569999999999999999999998654
No 261
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=6.8e-26 Score=254.95 Aligned_cols=183 Identities=19% Similarity=0.282 Sum_probs=144.0
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CCCceEE-------------
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP-----LKDASVV------------- 700 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~-----~~g~~~~------------- 700 (1303)
..+.+++.++.|.+ .++++|+||++++||+++|+|+||||||||+++|.|+++| .+|.+..
T Consensus 7 ~~~~~~~~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 7 IVMDCKLDKIFYGN-FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred ceEEEEeEEEEeCC-EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 46889999999964 4799999999999999999999999999999999999986 5653211
Q ss_pred -EcCeEEEEccCcccccccHHHHHccCCC---CC---hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHH
Q 000746 701 -IRGTVAYVPQISWIFNATLRKNILFGSE---FD---PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRV 773 (1303)
Q Consensus 701 -~~~~iayv~Q~p~l~~~TireNI~~g~~---~~---~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRi 773 (1303)
.+..++|++|++.+|+.|++|||.++.. ++ +++..++++..++.+++.. ..++...+||||||||+
T Consensus 86 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~qrv 158 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQRL 158 (261)
T ss_pred hhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHHHH
Confidence 1345999999999999999999998642 11 2345555665555443321 23456778999999999
Q ss_pred HHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEe--------CCEEEEec
Q 000746 774 SMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVS--------EGMIKEEG 821 (1303)
Q Consensus 774 aLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~--------~G~i~~~g 821 (1303)
+||||++. +.+.+..+++|+|++||+++.+. .||+|++|+ +|++++.|
T Consensus 159 ~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g 238 (261)
T PRK14263 159 CIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMG 238 (261)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeC
Confidence 99999642 33444445789999999999865 699999996 89999999
Q ss_pred CHHHHHhc
Q 000746 822 SFEELSKH 829 (1303)
Q Consensus 822 ~~~~l~~~ 829 (1303)
+++++.+.
T Consensus 239 ~~~~~~~~ 246 (261)
T PRK14263 239 PTAQIFQN 246 (261)
T ss_pred CHHHHHhC
Confidence 99988653
No 262
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.4e-25 Score=254.35 Aligned_cols=186 Identities=22% Similarity=0.321 Sum_probs=142.9
Q ss_pred CCCCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CCCceEE----------
Q 000746 636 PELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP-----LKDASVV---------- 700 (1303)
Q Consensus 636 ~~~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~-----~~g~~~~---------- 700 (1303)
++...++++|+++.|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++| .+|.+..
T Consensus 16 ~~~~~l~~~nl~~~~~~-~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~ 94 (274)
T PRK14265 16 PDHSVFEVEGVKVFYGG-FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQI 94 (274)
T ss_pred CCCceEEEeeEEEEeCC-eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccc
Confidence 34457999999999975 4699999999999999999999999999999999999863 4653211
Q ss_pred ----EcCeEEEEccCcccccccHHHHHccCCC---CC---hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHH
Q 000746 701 ----IRGTVAYVPQISWIFNATLRKNILFGSE---FD---PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQK 770 (1303)
Q Consensus 701 ----~~~~iayv~Q~p~l~~~TireNI~~g~~---~~---~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQk 770 (1303)
.++.|+|++|++.+++.|+.|||.++.. +. ++...+.++.+++.+.+. .........||||||
T Consensus 95 ~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~ 167 (274)
T PRK14265 95 NSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVK-------DKLKEKGTALSGGQQ 167 (274)
T ss_pred hhHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhH-------HHhcCCcccCCHHHH
Confidence 1346999999999998899999987632 11 222333444444433221 123456678999999
Q ss_pred HHHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEe---------CCEE
Q 000746 771 QRVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVS---------EGMI 817 (1303)
Q Consensus 771 QRiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~---------~G~i 817 (1303)
||++||||++. +.+.+..+++|+|++||+++.+. .||++++|+ +|++
T Consensus 168 qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~ 247 (274)
T PRK14265 168 QRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKL 247 (274)
T ss_pred HHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceE
Confidence 99999999542 33444445789999999999875 699999997 8999
Q ss_pred EEecCHHHHHhc
Q 000746 818 KEEGSFEELSKH 829 (1303)
Q Consensus 818 ~~~g~~~~l~~~ 829 (1303)
++.|+.+++..+
T Consensus 248 ~~~g~~~~~~~~ 259 (274)
T PRK14265 248 VEFSPTEQMFGS 259 (274)
T ss_pred EEeCCHHHHHhC
Confidence 999999988643
No 263
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.93 E-value=9.2e-26 Score=255.02 Aligned_cols=177 Identities=20% Similarity=0.285 Sum_probs=139.3
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc-------------CeE
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR-------------GTV 705 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~-------------~~i 705 (1303)
..++++|++++|++ ..+|+|+||++++|++++|+||||||||||+++|+|+++|++|.+ .+. ..+
T Consensus 6 ~~l~i~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 6 ARLRGEQLTLGYGK-YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHV-WLDGEHIQHYASKEVARRI 83 (265)
T ss_pred cEEEEEEEEEEECC-EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEE-EECCEEhhhCCHHHHhhhe
Confidence 46899999999975 469999999999999999999999999999999999999988743 322 359
Q ss_pred EEEccCcccc-cccHHHHHccCC-CC-------C---hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHH
Q 000746 706 AYVPQISWIF-NATLRKNILFGS-EF-------D---PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRV 773 (1303)
Q Consensus 706 ayv~Q~p~l~-~~TireNI~~g~-~~-------~---~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRi 773 (1303)
+|++|++.++ +.|++||+.++. +. . +++..++++..++.+. ......+||||||||+
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~Gq~qrv 152 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHL-----------ADQSVDTLSGGQRQRA 152 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHH-----------hcCCcccCChHHHHHH
Confidence 9999999887 579999998752 11 1 1233444444444332 2345578999999999
Q ss_pred HHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHH
Q 000746 774 SMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELS 827 (1303)
Q Consensus 774 aLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~ 827 (1303)
+||||+.. +.+.+.. +++|+|++||+++.+ ..||++++|++|++++.|+++++.
T Consensus 153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999542 2344432 378999999999976 569999999999999999998876
Q ss_pred h
Q 000746 828 K 828 (1303)
Q Consensus 828 ~ 828 (1303)
.
T Consensus 233 ~ 233 (265)
T PRK10253 233 T 233 (265)
T ss_pred h
Confidence 4
No 264
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1e-25 Score=253.75 Aligned_cols=185 Identities=21% Similarity=0.344 Sum_probs=138.6
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE--------------cCeE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI--------------RGTV 705 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~--------------~~~i 705 (1303)
.++++|+++.|++ .++|+|+||++++|++++|+||||||||||+++|.|+++|++|.+ .+ +..+
T Consensus 5 ~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 5 LLSVSGLMMRFGG-LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTI-LLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred eEEEeeEEEEECC-EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceE-EECCEECCCCCHHHHHhcCe
Confidence 5899999999964 479999999999999999999999999999999999999998743 22 2248
Q ss_pred EEEccCcccccc-cHHHHHccCCC-----------CChhhHHH--HHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHH
Q 000746 706 AYVPQISWIFNA-TLRKNILFGSE-----------FDPAKYWK--TVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQ 771 (1303)
Q Consensus 706 ayv~Q~p~l~~~-TireNI~~g~~-----------~~~~~~~~--vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQ 771 (1303)
+|++|+|.++.. |++||+.++.. ++...+.+ .-......+.++.+ |..........+|||||||
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LS~G~~q 160 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV--GLLEHANRQAGNLAYGQQR 160 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhC--ChhhhhhCChhhCCHHHHH
Confidence 999999999875 99999997531 00000000 00000112223332 3334455667889999999
Q ss_pred HHHHHHHHHH-----------------------HHHhHhc-C-CCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHH
Q 000746 772 RVSMARAVFN-----------------------SCIKEEL-R-GKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEE 825 (1303)
Q Consensus 772 RiaLARAl~~-----------------------~~i~~~~-~-~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~ 825 (1303)
|++||||++. +.+.+.. + ++|+|++||+++.+. .||++++|++|++++.|++++
T Consensus 161 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 240 (255)
T PRK11300 161 RLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEE 240 (255)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHHH
Confidence 9999999542 2333332 2 789999999999975 599999999999999999988
Q ss_pred HHh
Q 000746 826 LSK 828 (1303)
Q Consensus 826 l~~ 828 (1303)
+..
T Consensus 241 ~~~ 243 (255)
T PRK11300 241 IRN 243 (255)
T ss_pred Hhh
Confidence 754
No 265
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.93 E-value=9.1e-26 Score=246.85 Aligned_cols=168 Identities=28% Similarity=0.449 Sum_probs=131.4
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----------EcCeEEEEcc
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----------IRGTVAYVPQ 710 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----------~~~~iayv~Q 710 (1303)
++++|+++.|+. .++|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .++.++|++|
T Consensus 1 ~~~~~l~~~~~~---~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 77 (213)
T TIGR01277 1 LALDKVRYEYEH---LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77 (213)
T ss_pred CeEEeeeEEeCC---cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEec
Confidence 368999999963 568999999999999999999999999999999999999874321 1346999999
Q ss_pred Cccccc-ccHHHHHccCC-C-C-----ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-
Q 000746 711 ISWIFN-ATLRKNILFGS-E-F-----DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN- 781 (1303)
Q Consensus 711 ~p~l~~-~TireNI~~g~-~-~-----~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~- 781 (1303)
+|.+|. .|++||+.++. + . ++++..++++..++.+.....| .+||||||||++||||+..
T Consensus 78 ~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~laral~~~ 146 (213)
T TIGR01277 78 ENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-----------EQLSGGQRQRVALARCLVRP 146 (213)
T ss_pred cCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc-----------ccCCHHHHHHHHHHHHHhcC
Confidence 999886 59999998642 1 1 1234555666666654433333 4799999999999999542
Q ss_pred ----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecC
Q 000746 782 ----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGS 822 (1303)
Q Consensus 782 ----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~ 822 (1303)
+.+.+.. .++|+|++||+++.+. .||++++|++|++.+.|.
T Consensus 147 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 147 NPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 2334433 3789999999999875 599999999999998874
No 266
>PRK10908 cell division protein FtsE; Provisional
Probab=99.93 E-value=4.9e-26 Score=250.75 Aligned_cols=168 Identities=20% Similarity=0.320 Sum_probs=128.9
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE---------------EcCeE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV---------------IRGTV 705 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~---------------~~~~i 705 (1303)
++++|+++.|+++.++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .++.+
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 81 (222)
T PRK10908 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQI 81 (222)
T ss_pred EEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhhe
Confidence 689999999954457999999999999999999999999999999999999999875321 12469
Q ss_pred EEEccCccc-ccccHHHHHccCC---CCChhh----HHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHH
Q 000746 706 AYVPQISWI-FNATLRKNILFGS---EFDPAK----YWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMAR 777 (1303)
Q Consensus 706 ayv~Q~p~l-~~~TireNI~~g~---~~~~~~----~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLAR 777 (1303)
+|++|+|.+ ++.|++||+.++. ..++++ ..+.++..++.++ ......+||||||||++|||
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~lar 150 (222)
T PRK10908 82 GMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDK-----------AKNFPIQLSGGEQQRVGIAR 150 (222)
T ss_pred EEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hhCCchhCCHHHHHHHHHHH
Confidence 999999987 4789999998753 122222 2233333333322 22345689999999999999
Q ss_pred HHHH-----------------------HHHhHhc-CCCEEEEEecCCCcccc-cCEEEEEeCCEEEE
Q 000746 778 AVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLPH-VDRIILVSEGMIKE 819 (1303)
Q Consensus 778 Al~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~~-aD~ii~l~~G~i~~ 819 (1303)
|++. +.+.+.. +++|+|++||+++.+.. ||+|++|++|+++.
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 151 AVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 9542 2333332 47899999999999865 89999999999853
No 267
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.93 E-value=6.4e-26 Score=262.79 Aligned_cols=182 Identities=24% Similarity=0.365 Sum_probs=138.7
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-----------EcCeEEE
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-----------IRGTVAY 707 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-----------~~~~iay 707 (1303)
..|+++|++++|++ ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+.. .+..|+|
T Consensus 40 ~~i~i~nl~k~y~~-~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~ 118 (340)
T PRK13536 40 VAIDLAGVSKSYGD-KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGV 118 (340)
T ss_pred eeEEEEEEEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEE
Confidence 35999999999974 36999999999999999999999999999999999999999874321 1346999
Q ss_pred EccCcccc-cccHHHHHccCCC---CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH--
Q 000746 708 VPQISWIF-NATLRKNILFGSE---FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN-- 781 (1303)
Q Consensus 708 v~Q~p~l~-~~TireNI~~g~~---~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~-- 781 (1303)
+||++.++ +.|++||+.+... .+.++..+.++ .+.+. -.+++..++. ..+||||||||++||||+..
T Consensus 119 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~--~ll~~-~~L~~~~~~~----~~~LS~G~kqrv~lA~aL~~~P 191 (340)
T PRK13536 119 VPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIP--SLLEF-ARLESKADAR----VSDLSGGMKRRLTLARALINDP 191 (340)
T ss_pred EeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHH--HHHHH-cCCchhhCCC----hhhCCHHHHHHHHHHHHHhcCC
Confidence 99999986 6799999985321 22222221111 11121 1233333333 35799999999999999642
Q ss_pred ---------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHh
Q 000746 782 ---------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 782 ---------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
+.+.+.. +|+|+|++||+++.+. .||+|++|++|+++..|+++++.+
T Consensus 192 ~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 192 QLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 2343332 4899999999999985 599999999999999999999864
No 268
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=8.1e-26 Score=261.13 Aligned_cols=190 Identities=18% Similarity=0.263 Sum_probs=141.1
Q ss_pred CcEEEEeeEEEeCC---------CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE---------
Q 000746 639 PAVSIKNGNFSWDS---------KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV--------- 700 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~---------~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~--------- 700 (1303)
+.++++|+++.|+. ..++++||||+|++||+++|+|+||||||||+++|+|+++|++|.+..
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~ 83 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD 83 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCC
Confidence 35899999999963 136899999999999999999999999999999999999998874321
Q ss_pred ------EcCeEEEEccCcc--cc-cccHHHHHccC----CCCCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCC
Q 000746 701 ------IRGTVAYVPQISW--IF-NATLRKNILFG----SEFDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGV 763 (1303)
Q Consensus 701 ------~~~~iayv~Q~p~--l~-~~TireNI~~g----~~~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~ 763 (1303)
.+++|+||+|+|. +. ..|+.+|+... ...+. ++..+.++.+++.++ .. .....
T Consensus 84 ~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~------~~----~~~p~ 153 (327)
T PRK11308 84 PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPE------HY----DRYPH 153 (327)
T ss_pred HHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChH------Hh----cCCCc
Confidence 1357999999994 44 35999998632 11222 233444444444221 11 23456
Q ss_pred CCchHHHHHHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEE
Q 000746 764 NISGGQKQRVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMI 817 (1303)
Q Consensus 764 ~LSGGQkQRiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i 817 (1303)
.||||||||++||||+.. +.+.+.. .+.|+|+|||+++.+. .||+|++|++|+|
T Consensus 154 ~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~i 233 (327)
T PRK11308 154 MFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRC 233 (327)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 899999999999999642 2233332 3789999999999986 5999999999999
Q ss_pred EEecCHHHHHhcc--hHHHHHHH
Q 000746 818 KEEGSFEELSKHG--RLFQKLME 838 (1303)
Q Consensus 818 ~~~g~~~~l~~~~--~~~~~l~~ 838 (1303)
++.|+.+++.++. .+.+.++.
T Consensus 234 ve~g~~~~~~~~p~hpyt~~ll~ 256 (327)
T PRK11308 234 VEKGTKEQIFNNPRHPYTQALLS 256 (327)
T ss_pred EEECCHHHHhcCCCCHHHHHHHH
Confidence 9999999998653 33344443
No 269
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.93 E-value=6.4e-26 Score=260.45 Aligned_cols=177 Identities=23% Similarity=0.411 Sum_probs=139.3
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-----------EcCeEEEEc
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-----------IRGTVAYVP 709 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-----------~~~~iayv~ 709 (1303)
++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .++.++|+|
T Consensus 3 l~~~~l~~~~~~-~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~ 81 (301)
T TIGR03522 3 IRVSSLTKLYGT-QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLP 81 (301)
T ss_pred EEEEEEEEEECC-EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEec
Confidence 789999999964 46999999999999999999999999999999999999999874321 134699999
Q ss_pred cCcccccc-cHHHHHccCCC---CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH
Q 000746 710 QISWIFNA-TLRKNILFGSE---FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN 781 (1303)
Q Consensus 710 Q~p~l~~~-TireNI~~g~~---~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~ 781 (1303)
|+|.++.. |++||+.+... .+. ++..++++..++. ........+||||||||++||||++.
T Consensus 82 q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G~~qrv~la~al~~ 150 (301)
T TIGR03522 82 EHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLR-----------PEQHKKIGQLSKGYRQRVGLAQALIH 150 (301)
T ss_pred CCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-----------hHhcCchhhCCHHHHHHHHHHHHHhc
Confidence 99999865 99999976331 121 2233333333332 22344567899999999999999642
Q ss_pred -----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 782 -----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 782 -----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
+.+.+..+++|+|++||+++.+. .||+|++|++|+++..|+.+++.+.
T Consensus 151 ~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 151 DPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 34444446799999999999875 5999999999999999999998653
No 270
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1e-25 Score=254.02 Aligned_cols=181 Identities=22% Similarity=0.314 Sum_probs=140.2
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CCCceEE--------------
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP-----LKDASVV-------------- 700 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~-----~~g~~~~-------------- 700 (1303)
.++++|+++.|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|.+..
T Consensus 7 ~l~~~~l~~~~~~-~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 85 (259)
T PRK14260 7 AIKVKDLSFYYNT-SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININR 85 (259)
T ss_pred eEEEEEEEEEECC-eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHh
Confidence 6899999999974 4699999999999999999999999999999999999885 3553221
Q ss_pred EcCeEEEEccCcccccccHHHHHccCCC----CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHH
Q 000746 701 IRGTVAYVPQISWIFNATLRKNILFGSE----FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQR 772 (1303)
Q Consensus 701 ~~~~iayv~Q~p~l~~~TireNI~~g~~----~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQR 772 (1303)
.+..++|++|++.+|+.|++||+.++.. +++ ++..++++.+++.+++. ......+..||||||||
T Consensus 86 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~qr 158 (259)
T PRK14260 86 LRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVK-------DKLNKSALGLSGGQQQR 158 (259)
T ss_pred hhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhh-------hHhcCCcccCCHHHHHH
Confidence 1246999999999999999999987521 122 22334455444433322 12345667899999999
Q ss_pred HHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEe-----CCEEEEecCH
Q 000746 773 VSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVS-----EGMIKEEGSF 823 (1303)
Q Consensus 773 iaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~-----~G~i~~~g~~ 823 (1303)
++||||++. +.+.+..+++|+|++||+++.+. .||++++|+ +|++++.|++
T Consensus 159 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~ 238 (259)
T PRK14260 159 LCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVT 238 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCCH
Confidence 999999642 33444445789999999999875 599999997 5999999999
Q ss_pred HHHHh
Q 000746 824 EELSK 828 (1303)
Q Consensus 824 ~~l~~ 828 (1303)
+++.+
T Consensus 239 ~~~~~ 243 (259)
T PRK14260 239 TQIFS 243 (259)
T ss_pred HHHhc
Confidence 98864
No 271
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.93 E-value=1e-25 Score=248.48 Aligned_cols=172 Identities=23% Similarity=0.362 Sum_probs=136.8
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc---------CeEEEEccC
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR---------GTVAYVPQI 711 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~---------~~iayv~Q~ 711 (1303)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+ .+. ..++|++|+
T Consensus 1 l~l~~v~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~~~~~~~~~~~~~~~~~q~ 78 (223)
T TIGR03740 1 LETKNLSKRFGK-QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEI-IFDGHPWTRKDLHKIGSLIES 78 (223)
T ss_pred CEEEeEEEEECC-EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEeccccccccEEEEcCC
Confidence 468999999975 479999999999999999999999999999999999999998753 322 369999999
Q ss_pred ccccc-ccHHHHHccCC---CCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH------
Q 000746 712 SWIFN-ATLRKNILFGS---EFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN------ 781 (1303)
Q Consensus 712 p~l~~-~TireNI~~g~---~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~------ 781 (1303)
+.++. .|++||+.++. ..++++..+.++..++++.. .....+||||||||++||||+..
T Consensus 79 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~~rv~laral~~~p~lll 147 (223)
T TIGR03740 79 PPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTG-----------KKKAKQFSLGMKQRLGIAIALLNHPKLLI 147 (223)
T ss_pred CCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHH-----------hhhHhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 98875 69999998643 23444555555555554322 23346799999999999999542
Q ss_pred -----------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHH
Q 000746 782 -----------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEE 825 (1303)
Q Consensus 782 -----------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~ 825 (1303)
+.+.+.. +++|+|++||+++.+. .||+|++|++|++++.|+.++
T Consensus 148 lDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 148 LDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred ECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 3344332 4789999999999875 699999999999999998764
No 272
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.93 E-value=2.2e-25 Score=248.90 Aligned_cols=183 Identities=24% Similarity=0.393 Sum_probs=145.1
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc--CeEEEEccCccccc-
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR--GTVAYVPQISWIFN- 716 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~--~~iayv~Q~p~l~~- 716 (1303)
.++++|+++.|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|.+|. +.+. ..++|++|++.++.
T Consensus 4 ~l~~~~l~~~~~~-~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~-i~~~~~~~i~~v~q~~~~~~~ 81 (251)
T PRK09544 4 LVSLENVSVSFGQ-RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGV-IKRNGKLRIGYVPQKLYLDTT 81 (251)
T ss_pred EEEEeceEEEECC-ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCccCEEEeccccccccc
Confidence 5899999999975 46999999999999999999999999999999999999999874 4454 36999999998764
Q ss_pred --ccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-------------
Q 000746 717 --ATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN------------- 781 (1303)
Q Consensus 717 --~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~------------- 781 (1303)
.|+++|+.+....++++..++++.+++.+.++ .....||||||||++||||+..
T Consensus 82 l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~ 150 (251)
T PRK09544 82 LPLTVNRFLRLRPGTKKEDILPALKRVQAGHLID-----------APMQKLSGGETQRVLLARALLNRPQLLVLDEPTQG 150 (251)
T ss_pred cChhHHHHHhccccccHHHHHHHHHHcCChHHHh-----------CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 48999987654445666777777777765432 2346799999999999999642
Q ss_pred ----------HHHhHhc-C-CCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHhcchHHHHHH
Q 000746 782 ----------SCIKEEL-R-GKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLM 837 (1303)
Q Consensus 782 ----------~~i~~~~-~-~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~ 837 (1303)
+.+.+.. + ++|+|++||+++.+ ..||+|++|++ ++++.|+++++.. .+.+.+++
T Consensus 151 LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~-~~~~~~~~ 217 (251)
T PRK09544 151 VDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL-HPEFISMF 217 (251)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC-CHHHHHHh
Confidence 2333332 2 78999999999997 56999999965 7999999998864 33444443
No 273
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.4e-25 Score=251.95 Aligned_cols=184 Identities=21% Similarity=0.304 Sum_probs=141.3
Q ss_pred CCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCc-----eEE------------
Q 000746 638 LPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDA-----SVV------------ 700 (1303)
Q Consensus 638 ~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~-----~~~------------ 700 (1303)
.+.+.++|++++|++ .++++|+||++++||+++|+|+||||||||+++|.|+++|.+|. .+.
T Consensus 8 ~~~i~~~~~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 8 EDVFNISRLYLYIND-KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred hhheeeeeEEEecCC-ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 356999999999975 46999999999999999999999999999999999999998862 221
Q ss_pred -EcCeEEEEccCcccccc-cHHHHHccCCC---C-ChhhHH----HHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHH
Q 000746 701 -IRGTVAYVPQISWIFNA-TLRKNILFGSE---F-DPAKYW----KTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQK 770 (1303)
Q Consensus 701 -~~~~iayv~Q~p~l~~~-TireNI~~g~~---~-~~~~~~----~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQk 770 (1303)
.+..++|++|+|.++.+ |++||+.++.. + +++..+ ++++..++.+.+ .......+..||||||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~ 159 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV-------YDRLNSPASQLSGGQQ 159 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccc-------hhhhcCCcccCCHHHH
Confidence 13569999999999865 99999997532 2 222222 222222221111 1223456778999999
Q ss_pred HHHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHH
Q 000746 771 QRVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEEL 826 (1303)
Q Consensus 771 QRiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l 826 (1303)
||++||||++. +.+.+..+++|+|++||+++.+ ..||++++|++|++++.|+++++
T Consensus 160 qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~ 239 (257)
T PRK14246 160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239 (257)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999542 3344444579999999999998 56999999999999999999988
Q ss_pred Hhc
Q 000746 827 SKH 829 (1303)
Q Consensus 827 ~~~ 829 (1303)
.+.
T Consensus 240 ~~~ 242 (257)
T PRK14246 240 FTS 242 (257)
T ss_pred HhC
Confidence 654
No 274
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.2e-25 Score=252.16 Aligned_cols=170 Identities=24% Similarity=0.373 Sum_probs=132.6
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc--------CeEEEEccCc
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR--------GTVAYVPQIS 712 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~--------~~iayv~Q~p 712 (1303)
++++|+++.|++ .++++|+||+|++|++++|+||||||||||+++|+|+++|++|. +.++ ..++|++|++
T Consensus 2 l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~v~q~~ 79 (255)
T PRK11248 2 LQISHLYADYGG-KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGS-ITLDGKPVEGPGAERGVVFQNE 79 (255)
T ss_pred EEEEEEEEEeCC-eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEECCCCCCcEEEEeCCC
Confidence 689999999975 47999999999999999999999999999999999999999874 4332 3589999999
Q ss_pred cccc-ccHHHHHccCCC---CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH---
Q 000746 713 WIFN-ATLRKNILFGSE---FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN--- 781 (1303)
Q Consensus 713 ~l~~-~TireNI~~g~~---~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~--- 781 (1303)
.++. .|++||+.++.. .+. ++..+.++..++.+. ......+||||||||++||||++.
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGq~qrl~laral~~~p~ 148 (255)
T PRK11248 80 GLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGA-----------EKRYIWQLSGGQRQRVGIARALAANPQ 148 (255)
T ss_pred ccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhH-----------hhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9886 699999987532 222 223334444443322 233557899999999999999642
Q ss_pred --------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEe--CCEEEEecCH
Q 000746 782 --------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVS--EGMIKEEGSF 823 (1303)
Q Consensus 782 --------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~--~G~i~~~g~~ 823 (1303)
+.+.+.. .++|+|++||+++.+. .||+|++|+ +|++++.++.
T Consensus 149 lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 149 LLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 2344432 3799999999999874 599999998 5999988764
No 275
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.4e-25 Score=252.28 Aligned_cols=182 Identities=25% Similarity=0.356 Sum_probs=137.1
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCC-----CCceEE--------------
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPL-----KDASVV-------------- 700 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~-----~g~~~~-------------- 700 (1303)
.++++|+++.|++ .++++|+||+|++||+++|+|+||||||||+++|.|+++|. +|.+..
T Consensus 4 ~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T PRK14272 4 LLSAQDVNIYYGD-KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVA 82 (252)
T ss_pred EEEEeeeEEEECC-EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHH
Confidence 4789999999974 47999999999999999999999999999999999999764 553211
Q ss_pred EcCeEEEEccCccccc-ccHHHHHccCCC---C-ChhhHHHH----HHHHhhHHHhhcCCCCCCccccCCCCCCchHHHH
Q 000746 701 IRGTVAYVPQISWIFN-ATLRKNILFGSE---F-DPAKYWKT----VDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQ 771 (1303)
Q Consensus 701 ~~~~iayv~Q~p~l~~-~TireNI~~g~~---~-~~~~~~~v----l~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQ 771 (1303)
.+..++|++|++.++. .|++||+.++.. . .+++..+. ++..++.+. +++. ......+|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---l~~~----~~~~~~~LS~G~~q 155 (252)
T PRK14272 83 MRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDE---VKDR----LKTPATGLSGGQQQ 155 (252)
T ss_pred hhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchh---hhhh----hcCCcccCCHHHHH
Confidence 1346999999999887 599999986532 1 22222221 222222111 1111 23446789999999
Q ss_pred HHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHH
Q 000746 772 RVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELS 827 (1303)
Q Consensus 772 RiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~ 827 (1303)
|++||||+.. +.+++..+++|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 156 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 156 RLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999542 33444445799999999999887 59999999999999999999886
Q ss_pred hc
Q 000746 828 KH 829 (1303)
Q Consensus 828 ~~ 829 (1303)
.+
T Consensus 236 ~~ 237 (252)
T PRK14272 236 TN 237 (252)
T ss_pred hC
Confidence 54
No 276
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.93 E-value=4.5e-26 Score=249.14 Aligned_cols=164 Identities=33% Similarity=0.507 Sum_probs=125.1
Q ss_pred EEEeeEEEeCCC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcCeEEEE
Q 000746 642 SIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRGTVAYV 708 (1303)
Q Consensus 642 ~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~~iayv 708 (1303)
+++|+++.|++. .++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..|+|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 368999999752 46999999999999999999999999999999999999999875321 12469999
Q ss_pred ccCcc--cccccHHHHHccCCC---CChh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHH
Q 000746 709 PQISW--IFNATLRKNILFGSE---FDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAV 779 (1303)
Q Consensus 709 ~Q~p~--l~~~TireNI~~g~~---~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl 779 (1303)
+|++. +++.|++||+.++.. .+++ +..+.++..++.+. ......+||||||||++||||+
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~laral 149 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGL-----------RDRSPFTLSGGQKQRVAIAGVL 149 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhh-----------hcCCcccCCHHHHHHHHHHHHH
Confidence 99983 678899999987532 2222 22334444344322 2344578999999999999995
Q ss_pred HH-----------------------HHHhHhc-CCCEEEEEecCCCcccc-cCEEEEEeCCE
Q 000746 780 FN-----------------------SCIKEEL-RGKTRILVTNQLHFLPH-VDRIILVSEGM 816 (1303)
Q Consensus 780 ~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~~-aD~ii~l~~G~ 816 (1303)
+. +.+.+.. +++|+|++||+++.+.. ||+|++|++|+
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 42 2333333 47899999999998876 99999999985
No 277
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.5e-25 Score=251.93 Aligned_cols=183 Identities=22% Similarity=0.309 Sum_probs=138.7
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCC--C---CCCceEE-------------
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP--P---LKDASVV------------- 700 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~--~---~~g~~~~------------- 700 (1303)
..++++|+++.|++ .++|+|+||+|++||+++|+|+||||||||+++|.|..+ | ++|.+..
T Consensus 4 ~~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 4 KIITSSDVHLFYGK-FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred ceEEEEeEEEEECC-eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 35899999999975 479999999999999999999999999999999999864 4 3553211
Q ss_pred -EcCeEEEEccCcccccccHHHHHccCCC---C-Chh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHH
Q 000746 701 -IRGTVAYVPQISWIFNATLRKNILFGSE---F-DPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQ 771 (1303)
Q Consensus 701 -~~~~iayv~Q~p~l~~~TireNI~~g~~---~-~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQ 771 (1303)
.+..++|++|++.+++.|++||+.++.. . .++ +..+.++.+++.. +..........+|||||||
T Consensus 83 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~i~~~~~~~~~~LS~Gq~q 155 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWD-------EVKDHLHESALSLSGGQQQ 155 (252)
T ss_pred HhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCcc-------chhhHHhcCcccCCHHHHH
Confidence 1346999999999999999999987521 1 111 2222233333221 1122345566789999999
Q ss_pred HHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHH
Q 000746 772 RVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELS 827 (1303)
Q Consensus 772 RiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~ 827 (1303)
|++||||++. +.+.+..+++|+|+|||+++.+. .||+|++|++|++++.|+..+..
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 156 RVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999642 23444445689999999999975 59999999999999999988876
Q ss_pred hc
Q 000746 828 KH 829 (1303)
Q Consensus 828 ~~ 829 (1303)
.+
T Consensus 236 ~~ 237 (252)
T PRK14255 236 LN 237 (252)
T ss_pred cC
Confidence 43
No 278
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.93 E-value=8.6e-26 Score=238.31 Aligned_cols=136 Identities=32% Similarity=0.624 Sum_probs=117.1
Q ss_pred EEEEeeEEEeCCC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcCeEEE
Q 000746 641 VSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRGTVAY 707 (1303)
Q Consensus 641 i~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~~iay 707 (1303)
++++|++++|++. .++++|+||++++||+++|+||||||||||+++|+|+++|.+|.... .++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 4689999999753 36999999999999999999999999999999999999999874321 1346999
Q ss_pred EccCcccccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH------
Q 000746 708 VPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN------ 781 (1303)
Q Consensus 708 v~Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~------ 781 (1303)
++|+|++++.|++||+ ||||||||++||||++.
T Consensus 81 ~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~ll 119 (173)
T cd03246 81 LPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRILV 119 (173)
T ss_pred ECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999998 99999999999999542
Q ss_pred -----------------HHHhHhc-CCCEEEEEecCCCcccccCEEEEEeCCEE
Q 000746 782 -----------------SCIKEEL-RGKTRILVTNQLHFLPHVDRIILVSEGMI 817 (1303)
Q Consensus 782 -----------------~~i~~~~-~~~TvilvtH~~~~l~~aD~ii~l~~G~i 817 (1303)
+.+++.. +++|+|++||+++.+..||++++|++|++
T Consensus 120 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 120 LDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 2333332 47899999999999889999999999974
No 279
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.93 E-value=1.9e-25 Score=250.97 Aligned_cols=179 Identities=25% Similarity=0.381 Sum_probs=139.2
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC----CCCceEEE-----------cCe
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP----LKDASVVI-----------RGT 704 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~----~~g~~~~~-----------~~~ 704 (1303)
.++++|++++| + .++|+|+||++++||+++|+|+||||||||+++|+|+.+| ++|.+ .+ ++.
T Consensus 4 ~l~~~~l~~~~-~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i-~~~g~~i~~~~~~~~~ 80 (254)
T PRK10418 4 QIELRNIALQA-A-QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRV-LLDGKPVAPCALRGRK 80 (254)
T ss_pred EEEEeCeEEEe-c-cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEE-EECCeeccccccccce
Confidence 58999999999 3 4799999999999999999999999999999999999998 77743 22 246
Q ss_pred EEEEccCcc-ccc--ccHHHHHcc-----CCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHH
Q 000746 705 VAYVPQISW-IFN--ATLRKNILF-----GSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMA 776 (1303)
Q Consensus 705 iayv~Q~p~-l~~--~TireNI~~-----g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLA 776 (1303)
++|++|++. .|+ .|+.+|+.+ +.+.+++++.+.++.+++.+. ++.++....+||||||||++||
T Consensus 81 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv~la 152 (254)
T PRK10418 81 IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRMMIA 152 (254)
T ss_pred EEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHHHHH
Confidence 999999984 443 588888753 222233455555555444221 1245566788999999999999
Q ss_pred HHHHH-----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 777 RAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 777 RAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
||+.. +.+++.. .++|+|++||+++.+. .||++++|++|++++.|+.+++.+.
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 231 (254)
T PRK10418 153 LALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNA 231 (254)
T ss_pred HHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 99532 3344432 3789999999999875 6999999999999999999988654
No 280
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.93 E-value=1.2e-25 Score=253.53 Aligned_cols=175 Identities=21% Similarity=0.392 Sum_probs=136.7
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCC--------CCceEEEc----------
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPL--------KDASVVIR---------- 702 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~--------~g~~~~~~---------- 702 (1303)
++++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|. +|. +.+.
T Consensus 2 l~~~nl~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~-i~~~g~~~~~~~~~ 79 (272)
T PRK13547 2 LTADHLHVARRH-RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGD-VTLNGEPLAAIDAP 79 (272)
T ss_pred eEEEEEEEEECC-EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceE-EEECCEEcccCCHH
Confidence 689999999964 47999999999999999999999999999999999999987 663 3332
Q ss_pred ---CeEEEEccCcc-cccccHHHHHccCCC-C-------Ch---hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCch
Q 000746 703 ---GTVAYVPQISW-IFNATLRKNILFGSE-F-------DP---AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISG 767 (1303)
Q Consensus 703 ---~~iayv~Q~p~-l~~~TireNI~~g~~-~-------~~---~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSG 767 (1303)
+.++|++|++. +++.|++||+.++.. . .+ ++.+++++..+ ..+..+....+|||
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSg 148 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAG-----------ATALVGRDVTTLSG 148 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcC-----------cHhhhcCCcccCCH
Confidence 24899999986 578899999987531 1 11 12223333332 33445566788999
Q ss_pred HHHHHHHHHHHHHH---------H-----------------------HHhHhc-C-CCEEEEEecCCCccc-ccCEEEEE
Q 000746 768 GQKQRVSMARAVFN---------S-----------------------CIKEEL-R-GKTRILVTNQLHFLP-HVDRIILV 812 (1303)
Q Consensus 768 GQkQRiaLARAl~~---------~-----------------------~i~~~~-~-~~TvilvtH~~~~l~-~aD~ii~l 812 (1303)
|||||++||||++. + .+.+.. + ++|+|++||+++.+. .||++++|
T Consensus 149 G~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l 228 (272)
T PRK13547 149 GELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAML 228 (272)
T ss_pred HHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 99999999999982 1 223332 2 789999999999875 69999999
Q ss_pred eCCEEEEecCHHHHHh
Q 000746 813 SEGMIKEEGSFEELSK 828 (1303)
Q Consensus 813 ~~G~i~~~g~~~~l~~ 828 (1303)
++|++++.|+++++..
T Consensus 229 ~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 229 ADGAIVAHGAPADVLT 244 (272)
T ss_pred ECCeEEEecCHHHHcC
Confidence 9999999999988754
No 281
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.93 E-value=9.9e-26 Score=246.90 Aligned_cols=165 Identities=28% Similarity=0.429 Sum_probs=127.1
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE--------------EcCeEE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV--------------IRGTVA 706 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~--------------~~~~ia 706 (1303)
++++|+++.|++ .++++|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .++.++
T Consensus 1 l~~~~l~~~~~~-~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (213)
T cd03262 1 IEIKNLHKSFGD-FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVG 79 (213)
T ss_pred CEEEEEEEEECC-eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcce
Confidence 468999999975 46999999999999999999999999999999999999998874321 124599
Q ss_pred EEccCccccc-ccHHHHHccCC----CCChh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHH
Q 000746 707 YVPQISWIFN-ATLRKNILFGS----EFDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMAR 777 (1303)
Q Consensus 707 yv~Q~p~l~~-~TireNI~~g~----~~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLAR 777 (1303)
|++|+|.++. .|++||+.++. ..+.+ +..+.++..++. ........+||||||||++|||
T Consensus 80 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~la~ 148 (213)
T cd03262 80 MVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLA-----------DKADAYPAQLSGGQQQRVAIAR 148 (213)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCH-----------hHhhhCccccCHHHHHHHHHHH
Confidence 9999999885 69999998753 22222 222333333332 2233445789999999999999
Q ss_pred HHHH-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEE
Q 000746 778 AVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMI 817 (1303)
Q Consensus 778 Al~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i 817 (1303)
|+.. +.+.+.. .++|+|++||+++.+. .||+|++|++|++
T Consensus 149 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 149 ALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9542 2344332 4789999999999985 5999999999974
No 282
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.93 E-value=3.3e-25 Score=250.63 Aligned_cols=188 Identities=21% Similarity=0.346 Sum_probs=140.2
Q ss_pred cEEEEeeEEEeCC--------CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-----------
Q 000746 640 AVSIKNGNFSWDS--------KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----------- 700 (1303)
Q Consensus 640 ~i~~~~~~f~~~~--------~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----------- 700 (1303)
.++++|++++|+. ..++|+|+||++++||+++|+||||||||||+++|+|+++|.+|.+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 5899999999952 236999999999999999999999999999999999999999875321
Q ss_pred -EcCeEEEEccCcc--cc-cccHHHHHccCC----CCCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchH
Q 000746 701 -IRGTVAYVPQISW--IF-NATLRKNILFGS----EFDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGG 768 (1303)
Q Consensus 701 -~~~~iayv~Q~p~--l~-~~TireNI~~g~----~~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGG 768 (1303)
.+..++|++|+|. ++ +.|+.+|+.++. ..+. ++..++++.+++.++. ......+||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS~G 153 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDH----------ASYYPHMLAPG 153 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHH----------HhcCchhcCHH
Confidence 1236999999985 34 348999987532 1221 2334445555542211 11234679999
Q ss_pred HHHHHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCcccc-cCEEEEEeCCEEEEecC
Q 000746 769 QKQRVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLPH-VDRIILVSEGMIKEEGS 822 (1303)
Q Consensus 769 QkQRiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~~-aD~ii~l~~G~i~~~g~ 822 (1303)
||||++||||+.. +.+.+.. .++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 154 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 233 (267)
T PRK15112 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCC
Confidence 9999999999642 2344432 37899999999999875 99999999999999999
Q ss_pred HHHHHhcc--hHHHHHH
Q 000746 823 FEELSKHG--RLFQKLM 837 (1303)
Q Consensus 823 ~~~l~~~~--~~~~~l~ 837 (1303)
++++.... ..+.+++
T Consensus 234 ~~~~~~~~~~~~~~~~~ 250 (267)
T PRK15112 234 TADVLASPLHELTKRLI 250 (267)
T ss_pred HHHHhcCCCCHHHHHHH
Confidence 99987643 3344443
No 283
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.4e-25 Score=253.06 Aligned_cols=183 Identities=22% Similarity=0.345 Sum_probs=140.7
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCC-----CCceE--------------
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPL-----KDASV-------------- 699 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~-----~g~~~-------------- 699 (1303)
+.++++|++++|++ .++|+|+||++++|++++|+|+||||||||+++|.|+++|. +|...
T Consensus 6 ~~l~~~nl~~~~~~-~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~ 84 (261)
T PRK14258 6 PAIKVNNLSFYYDT-QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLN 84 (261)
T ss_pred ceEEEeeEEEEeCC-eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchH
Confidence 36899999999964 36999999999999999999999999999999999999984 44211
Q ss_pred EEcCeEEEEccCcccccccHHHHHccCCC---C-Ch----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHH
Q 000746 700 VIRGTVAYVPQISWIFNATLRKNILFGSE---F-DP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQ 771 (1303)
Q Consensus 700 ~~~~~iayv~Q~p~l~~~TireNI~~g~~---~-~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQ 771 (1303)
..++.++|++|++.+|..|++||+.++.. . ++ ++..++++..++.+.+. ...+....+|||||||
T Consensus 85 ~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~q 157 (261)
T PRK14258 85 RLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIK-------HKIHKSALDLSGGQQQ 157 (261)
T ss_pred HhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhh-------hHhcCCcccCCHHHHH
Confidence 01346999999999999999999986521 1 11 22333444444432222 2345567889999999
Q ss_pred HHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeC-----CEEEEe
Q 000746 772 RVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSE-----GMIKEE 820 (1303)
Q Consensus 772 RiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~-----G~i~~~ 820 (1303)
|++||||+.. +.+.+.. .++|+|++||+++.+. .||+|++|++ |++++.
T Consensus 158 rv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 237 (261)
T PRK14258 158 RLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEF 237 (261)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEe
Confidence 9999999542 2344322 4899999999999875 5999999999 999999
Q ss_pred cCHHHHHhc
Q 000746 821 GSFEELSKH 829 (1303)
Q Consensus 821 g~~~~l~~~ 829 (1303)
|+++++.+.
T Consensus 238 ~~~~~~~~~ 246 (261)
T PRK14258 238 GLTKKIFNS 246 (261)
T ss_pred CCHHHHHhC
Confidence 999998653
No 284
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.93 E-value=2.2e-25 Score=251.18 Aligned_cols=183 Identities=20% Similarity=0.288 Sum_probs=138.1
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE---------E---------
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV---------I--------- 701 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~---------~--------- 701 (1303)
.++++|+++.|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|.+.. +
T Consensus 6 ~l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~ 84 (258)
T PRK11701 6 LLSVRGLTKLYGP-RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERR 84 (258)
T ss_pred eEEEeeeEEEcCC-ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHH
Confidence 5899999999975 47999999999999999999999999999999999999999874321 1
Q ss_pred ---cCeEEEEccCcc--cc-cccHHHHHccCC----CCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHH
Q 000746 702 ---RGTVAYVPQISW--IF-NATLRKNILFGS----EFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQ 771 (1303)
Q Consensus 702 ---~~~iayv~Q~p~--l~-~~TireNI~~g~----~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQ 771 (1303)
++.++|++|++. ++ +.|+.|||.+.. ..+..+..+ ...+.++.++-+ .+.....+.+|||||||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~-~~~~~~~~~~LS~Gq~q 158 (258)
T PRK11701 85 RLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERVEID-AARIDDLPTTFSGGMQQ 158 (258)
T ss_pred HHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHcCCC-hhHHhCCCccCCHHHHH
Confidence 225999999984 33 458899986421 111111111 112334444322 13456778899999999
Q ss_pred HHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHH
Q 000746 772 RVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEE 825 (1303)
Q Consensus 772 RiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~ 825 (1303)
|++||||+.. +.+.+.. .+.|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 159 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 238 (258)
T PRK11701 159 RLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQ 238 (258)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 9999999542 3344433 2789999999999986 699999999999999999998
Q ss_pred HHhc
Q 000746 826 LSKH 829 (1303)
Q Consensus 826 l~~~ 829 (1303)
+..+
T Consensus 239 ~~~~ 242 (258)
T PRK11701 239 VLDD 242 (258)
T ss_pred HhcC
Confidence 8643
No 285
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.93 E-value=2.1e-25 Score=249.63 Aligned_cols=175 Identities=18% Similarity=0.235 Sum_probs=129.9
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCC--CCCCCceEEE--------------cCe
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGEL--PPLKDASVVI--------------RGT 704 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~--~~~~g~~~~~--------------~~~ 704 (1303)
++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+. +|++|.+ .+ +..
T Consensus 1 l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i-~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 1 LKIKDLHVSVED-KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTI-LFKGQDLLELEPDERARAG 78 (243)
T ss_pred CeEeeEEEEECC-EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceE-EECCEecCCCCHHHhhccc
Confidence 468999999974 46999999999999999999999999999999999995 6888743 22 123
Q ss_pred EEEEccCcccccc-cHHHHHccCCC----------CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCC-CCchH
Q 000746 705 VAYVPQISWIFNA-TLRKNILFGSE----------FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGV-NISGG 768 (1303)
Q Consensus 705 iayv~Q~p~l~~~-TireNI~~g~~----------~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~-~LSGG 768 (1303)
++|++|+|.++.+ |++||+.+... .+. ++..++++..++.++ . ...... +||||
T Consensus 79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~---~~~~~~~~LS~G 148 (243)
T TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEE-------F---LNRSVNEGFSGG 148 (243)
T ss_pred eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchh-------h---cccccccCcCHH
Confidence 8999999998865 89999976421 111 112222222222211 1 112222 49999
Q ss_pred HHHHHHHHHHHHH-----------------------HHHhHhc-CCCEEEEEecCCCcccc--cCEEEEEeCCEEEEecC
Q 000746 769 QKQRVSMARAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLPH--VDRIILVSEGMIKEEGS 822 (1303)
Q Consensus 769 QkQRiaLARAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~~--aD~ii~l~~G~i~~~g~ 822 (1303)
||||++||||++. +.+.+.. +++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 149 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~ 228 (243)
T TIGR01978 149 EKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGD 228 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecC
Confidence 9999999999542 2333332 47899999999999875 79999999999999998
Q ss_pred HHHHH
Q 000746 823 FEELS 827 (1303)
Q Consensus 823 ~~~l~ 827 (1303)
++++.
T Consensus 229 ~~~~~ 233 (243)
T TIGR01978 229 VELAK 233 (243)
T ss_pred HHHhc
Confidence 87543
No 286
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2e-25 Score=258.03 Aligned_cols=181 Identities=18% Similarity=0.278 Sum_probs=134.3
Q ss_pred cEEEEeeEEEeCCC---CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC----CCCceEEEc----------
Q 000746 640 AVSIKNGNFSWDSK---SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP----LKDASVVIR---------- 702 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~---~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~----~~g~~~~~~---------- 702 (1303)
.++++|+++.|+.+ ..+|+||||+|++||+++|+|+||||||||+++|+|++++ ++|. +.++
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~-i~~~G~~i~~~~~~ 81 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEK-LEFNGQDLQRISEK 81 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceE-EEECCEECCcCCHH
Confidence 47899999999753 2589999999999999999999999999999999999974 5553 3222
Q ss_pred -------CeEEEEccCcc--cc-cccHHHHHc----cCCCCC----hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCC
Q 000746 703 -------GTVAYVPQISW--IF-NATLRKNIL----FGSEFD----PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVN 764 (1303)
Q Consensus 703 -------~~iayv~Q~p~--l~-~~TireNI~----~g~~~~----~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~ 764 (1303)
+.|+|++|+|. +. .-|+.+|+. .....+ +++..+.++..+|.+. .........+
T Consensus 82 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~--------~~~l~~~p~~ 153 (326)
T PRK11022 82 ERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDP--------ASRLDVYPHQ 153 (326)
T ss_pred HHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------HHHHhCCchh
Confidence 25999999995 33 346666553 221122 2233344444444221 1223456778
Q ss_pred CchHHHHHHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEeCCEEE
Q 000746 765 ISGGQKQRVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMIK 818 (1303)
Q Consensus 765 LSGGQkQRiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~ 818 (1303)
||||||||++||||+.. +.+.+.. .+.|+|+|||+++.+ ..||+|++|.+|+|+
T Consensus 154 LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~iv 233 (326)
T PRK11022 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVV 233 (326)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999642 2233332 378999999999987 469999999999999
Q ss_pred EecCHHHHHhc
Q 000746 819 EEGSFEELSKH 829 (1303)
Q Consensus 819 ~~g~~~~l~~~ 829 (1303)
+.|+.+++.++
T Consensus 234 e~g~~~~~~~~ 244 (326)
T PRK11022 234 ETGKAHDIFRA 244 (326)
T ss_pred EECCHHHHhhC
Confidence 99999999865
No 287
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3.2e-25 Score=249.93 Aligned_cols=181 Identities=23% Similarity=0.332 Sum_probs=138.0
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC-----CCCceEE--------------
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP-----LKDASVV-------------- 700 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~-----~~g~~~~-------------- 700 (1303)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++| ++|.+..
T Consensus 4 ~l~i~~v~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~ 82 (258)
T PRK14241 4 RIDVKDLNIYYGS-FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82 (258)
T ss_pred cEEEeeEEEEECC-EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHH
Confidence 5899999999975 3699999999999999999999999999999999999974 5663321
Q ss_pred EcCeEEEEccCccccc-ccHHHHHccCCC----CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHH
Q 000746 701 IRGTVAYVPQISWIFN-ATLRKNILFGSE----FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQ 771 (1303)
Q Consensus 701 ~~~~iayv~Q~p~l~~-~TireNI~~g~~----~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQ 771 (1303)
.++.++|++|++.++. .|++||+.++.. .+. ++..++++..++.+.+ .........+|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~q 155 (258)
T PRK14241 83 VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEV-------KDRLDKPGGGLSGGQQQ 155 (258)
T ss_pred HhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhHhhCCcccCCHHHHH
Confidence 1245999999999886 699999986531 111 1223333333332211 12334566789999999
Q ss_pred HHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCcc-cccCEEEEEe------CCEEEEec
Q 000746 772 RVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFL-PHVDRIILVS------EGMIKEEG 821 (1303)
Q Consensus 772 RiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l-~~aD~ii~l~------~G~i~~~g 821 (1303)
|++||||++. +.+.+..+++|+|++||+++.+ +.||+|++|+ +|++++.|
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~ 235 (258)
T PRK14241 156 RLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEID 235 (258)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecC
Confidence 9999999542 3344444578999999999986 4699999996 89999999
Q ss_pred CHHHHHh
Q 000746 822 SFEELSK 828 (1303)
Q Consensus 822 ~~~~l~~ 828 (1303)
+++++..
T Consensus 236 ~~~~~~~ 242 (258)
T PRK14241 236 DTEKIFS 242 (258)
T ss_pred CHHHHHh
Confidence 9998864
No 288
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.93 E-value=1.7e-25 Score=247.09 Aligned_cols=179 Identities=28% Similarity=0.428 Sum_probs=129.9
Q ss_pred EEEEeeEEEeCCC---CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCC---CCCCceEE---------EcCeE
Q 000746 641 VSIKNGNFSWDSK---SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP---PLKDASVV---------IRGTV 705 (1303)
Q Consensus 641 i~~~~~~f~~~~~---~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~---~~~g~~~~---------~~~~i 705 (1303)
+.++|+++.|++. .++++|+||+|++||+++|+||||||||||+++|.|+++ |++|.+.. .+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i 83 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCV 83 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccE
Confidence 5789999999765 579999999999999999999999999999999999998 88874321 24569
Q ss_pred EEEccCcccccc-cHHHHHccCCCCC-hhhHHHHHHHHhhHHHhhcCCCCCCccc-cCCCCCCchHHHHHHHHHHHHHH-
Q 000746 706 AYVPQISWIFNA-TLRKNILFGSEFD-PAKYWKTVDVSALQHDLDLLPDRDLTEI-GERGVNISGGQKQRVSMARAVFN- 781 (1303)
Q Consensus 706 ayv~Q~p~l~~~-TireNI~~g~~~~-~~~~~~vl~~~~l~~~i~~lp~g~~T~i-ge~G~~LSGGQkQRiaLARAl~~- 781 (1303)
+|++|++.++++ |++||+.++.... .....+.......++ ..++....+.+ .....+||||||||++||||+..
T Consensus 84 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 161 (226)
T cd03234 84 AYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVED--VLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWD 161 (226)
T ss_pred EEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHH--HHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhC
Confidence 999999999976 9999998753210 000000000000011 01222222333 33457899999999999999642
Q ss_pred ----------------------HHHhHhc-CCCEEEEEecCCC--cccccCEEEEEeCCEEEEec
Q 000746 782 ----------------------SCIKEEL-RGKTRILVTNQLH--FLPHVDRIILVSEGMIKEEG 821 (1303)
Q Consensus 782 ----------------------~~i~~~~-~~~TvilvtH~~~--~l~~aD~ii~l~~G~i~~~g 821 (1303)
+.+.+.. +++|+|++||++. ....||++++|++|+++++|
T Consensus 162 p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 162 PKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 2333332 4789999999983 45779999999999999865
No 289
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3.5e-25 Score=251.13 Aligned_cols=176 Identities=26% Similarity=0.393 Sum_probs=135.0
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc----------CeEEEEc
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR----------GTVAYVP 709 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~----------~~iayv~ 709 (1303)
.++++|++++|+++.++++|+||+|++|++++|+||||||||||+++|+|+++|++|.+ .+. ..++|++
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~~~~i~~v~ 84 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKI-SILGQPTRQALQKNLVAYVP 84 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEEhHHhhccceEEEec
Confidence 58999999999754579999999999999999999999999999999999999998743 332 3599999
Q ss_pred cCccc---ccccHHHHHccCCC--------C---ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHH
Q 000746 710 QISWI---FNATLRKNILFGSE--------F---DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSM 775 (1303)
Q Consensus 710 Q~p~l---~~~TireNI~~g~~--------~---~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaL 775 (1303)
|+|.+ +..++++|+.++.. . ++++..++++..++.+.. + ....+||||||||++|
T Consensus 85 q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~----~~~~~LSgG~~qrv~l 153 (272)
T PRK15056 85 QSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFR-------H----RQIGELSGGQKKRVFL 153 (272)
T ss_pred cccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHh-------c----CCcccCCHHHHHHHHH
Confidence 99865 45689999976421 0 122334444444443322 2 2345799999999999
Q ss_pred HHHHHH-----------------------HHHhHhc-CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHh
Q 000746 776 ARAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 776 ARAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
|||++. +.+.+.. +++|+|++||+++.+ ..||+++++ +|++++.|+++++..
T Consensus 154 araL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~~ 230 (272)
T PRK15056 154 ARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTFT 230 (272)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhccC
Confidence 999642 2343332 478999999999876 569999777 899999999988753
No 290
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.93 E-value=3.3e-25 Score=256.44 Aligned_cols=194 Identities=18% Similarity=0.292 Sum_probs=141.4
Q ss_pred CcEEEEeeEEEeCCC---CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCC---CCceEEE-----------
Q 000746 639 PAVSIKNGNFSWDSK---SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPL---KDASVVI----------- 701 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~---~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~---~g~~~~~----------- 701 (1303)
+.++++|+++.|+.. .++++|+||+|++||+++|+|+||||||||+++|+|+++|. +|. +.+
T Consensus 11 ~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~-I~~~G~~i~~~~~~ 89 (330)
T PRK09473 11 ALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGS-ATFNGREILNLPEK 89 (330)
T ss_pred ceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeE-EEECCEECCcCCHH
Confidence 468999999999632 36899999999999999999999999999999999999985 663 322
Q ss_pred -----c-CeEEEEccCcc--cc-cccHHHHHccC----CCCChhhH-HHHHHHHhhHHHhhcCCCCCCccccCCCCCCch
Q 000746 702 -----R-GTVAYVPQISW--IF-NATLRKNILFG----SEFDPAKY-WKTVDVSALQHDLDLLPDRDLTEIGERGVNISG 767 (1303)
Q Consensus 702 -----~-~~iayv~Q~p~--l~-~~TireNI~~g----~~~~~~~~-~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSG 767 (1303)
+ +.|+||+|+|. +. ..|+.+|+... ...+.++. .++.+. .+.+ .++++. ..++....+|||
T Consensus 90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~---L~~v-gL~~~~-~~~~~~p~~LSg 164 (330)
T PRK09473 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRM---LDAV-KMPEAR-KRMKMYPHEFSG 164 (330)
T ss_pred HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH---HHHc-CCCChH-HHhcCCcccCCH
Confidence 1 36999999983 43 35888877532 12232222 222221 1222 234332 235677889999
Q ss_pred HHHHHHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEec
Q 000746 768 GQKQRVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEG 821 (1303)
Q Consensus 768 GQkQRiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g 821 (1303)
|||||++||||+.. +.+.+.. .+.|+|+|||+++.+. .||+|++|++|+|++.|
T Consensus 165 G~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g 244 (330)
T PRK09473 165 GMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYG 244 (330)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999542 2333332 3789999999999976 69999999999999999
Q ss_pred CHHHHHhcc--hHHHHHHH
Q 000746 822 SFEELSKHG--RLFQKLME 838 (1303)
Q Consensus 822 ~~~~l~~~~--~~~~~l~~ 838 (1303)
+.+++.++. .+.+.++.
T Consensus 245 ~~~~i~~~p~~pyt~~l~~ 263 (330)
T PRK09473 245 NARDVFYQPSHPYSIGLLN 263 (330)
T ss_pred CHHHHHhCCCCHHHHHHHH
Confidence 999998643 33344443
No 291
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.93 E-value=2.3e-25 Score=244.87 Aligned_cols=166 Identities=30% Similarity=0.443 Sum_probs=129.9
Q ss_pred EEEEeeEEEeCCC---CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE---------------Ec
Q 000746 641 VSIKNGNFSWDSK---SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV---------------IR 702 (1303)
Q Consensus 641 i~~~~~~f~~~~~---~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~---------------~~ 702 (1303)
++++|+++.|+++ .++|+|+||++++|++++|+|+||||||||+++|.|+++|++|.+.. .+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 6899999999642 46999999999999999999999999999999999999999874321 12
Q ss_pred CeEEEEccCccccc-ccHHHHHccCCC----CChh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHH
Q 000746 703 GTVAYVPQISWIFN-ATLRKNILFGSE----FDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRV 773 (1303)
Q Consensus 703 ~~iayv~Q~p~l~~-~TireNI~~g~~----~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRi 773 (1303)
..++|++|+|.++. .|+.||+.++.. .+.+ ++.++++.+++.+.. .....+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHL-----------DYYPHNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhh-----------hcChhhCCHHHHHHH
Confidence 46999999999886 799999987542 2222 233444444443333 334468999999999
Q ss_pred HHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCcccccCEEEEEeCCEE
Q 000746 774 SMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLPHVDRIILVSEGMI 817 (1303)
Q Consensus 774 aLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~~aD~ii~l~~G~i 817 (1303)
+||||+.. +.+++.. +++|+|++||+++....||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 99999642 2344433 37999999999998888999999999986
No 292
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.93 E-value=2.5e-25 Score=239.15 Aligned_cols=149 Identities=28% Similarity=0.467 Sum_probs=122.8
Q ss_pred cEEEEeeEEEeCC-----CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCC--CCCCCceEE---------EcC
Q 000746 640 AVSIKNGNFSWDS-----KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGEL--PPLKDASVV---------IRG 703 (1303)
Q Consensus 640 ~i~~~~~~f~~~~-----~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~--~~~~g~~~~---------~~~ 703 (1303)
.++++|+++.|+. +.++++|+||++++||+++|+||||||||||+++|+|++ +|.+|.+.. .++
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 82 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRK 82 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhh
Confidence 5899999999975 257999999999999999999999999999999999999 998874321 245
Q ss_pred eEEEEccCccccc-ccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-
Q 000746 704 TVAYVPQISWIFN-ATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN- 781 (1303)
Q Consensus 704 ~iayv~Q~p~l~~-~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~- 781 (1303)
.++|++|++.++. .|++||+.++... . .||||||||++||||+..
T Consensus 83 ~i~~~~q~~~~~~~~t~~~~i~~~~~~--------------~-------------------~LS~G~~qrv~laral~~~ 129 (194)
T cd03213 83 IIGYVPQDDILHPTLTVRETLMFAAKL--------------R-------------------GLSGGERKRVSIALELVSN 129 (194)
T ss_pred eEEEccCcccCCCCCcHHHHHHHHHHh--------------c-------------------cCCHHHHHHHHHHHHHHcC
Confidence 7999999999886 5999999653210 0 799999999999999542
Q ss_pred ----------------------HHHhHhc-CCCEEEEEecCCC-cc-cccCEEEEEeCCEEEEec
Q 000746 782 ----------------------SCIKEEL-RGKTRILVTNQLH-FL-PHVDRIILVSEGMIKEEG 821 (1303)
Q Consensus 782 ----------------------~~i~~~~-~~~TvilvtH~~~-~l-~~aD~ii~l~~G~i~~~g 821 (1303)
+.+++.. +++|+|++||+++ .+ ..+|++++|++|++++.|
T Consensus 130 p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 130 PSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 2344433 4899999999997 44 569999999999998754
No 293
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.93 E-value=2.6e-25 Score=260.60 Aligned_cols=172 Identities=23% Similarity=0.409 Sum_probs=133.0
Q ss_pred eeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----------------EcCeEEEE
Q 000746 645 NGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----------------IRGTVAYV 708 (1303)
Q Consensus 645 ~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----------------~~~~iayv 708 (1303)
|++++|++. .+ |+||++++||+++|+||||||||||+++|+|+++|++|.+.. .+..++|+
T Consensus 4 ~l~~~~~~~--~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v 80 (354)
T TIGR02142 4 RFSKRLGDF--SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80 (354)
T ss_pred EEEEEECCE--EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEE
Confidence 788899643 35 999999999999999999999999999999999998874321 13469999
Q ss_pred ccCccccc-ccHHHHHccCCCC-Ch----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-
Q 000746 709 PQISWIFN-ATLRKNILFGSEF-DP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN- 781 (1303)
Q Consensus 709 ~Q~p~l~~-~TireNI~~g~~~-~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~- 781 (1303)
+|++.+|. .|++||+.++... +. ++..+.++..++. ........+||||||||++||||+..
T Consensus 81 ~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~-----------~~~~~~~~~LSgGqkqRvalAraL~~~ 149 (354)
T TIGR02142 81 FQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIG-----------HLLGRLPGRLSGGEKQRVAIGRALLSS 149 (354)
T ss_pred ecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCCh-----------hHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 99999986 5999999987431 11 1233344433333 23344557899999999999999642
Q ss_pred ----------------------HHHhHhcC--CCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHhcc
Q 000746 782 ----------------------SCIKEELR--GKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 782 ----------------------~~i~~~~~--~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~~~ 830 (1303)
+.+++..+ ++|+|++||+++.+. .||+|++|++|++++.|+++++....
T Consensus 150 p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 223 (354)
T TIGR02142 150 PRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223 (354)
T ss_pred CCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCc
Confidence 23333332 789999999999875 59999999999999999999987643
No 294
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.93 E-value=1.2e-25 Score=219.54 Aligned_cols=169 Identities=26% Similarity=0.352 Sum_probs=131.4
Q ss_pred cEEEEeeEEEeCCCC---CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----------------
Q 000746 640 AVSIKNGNFSWDSKS---PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV---------------- 700 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~---~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~---------------- 700 (1303)
.|++++++..-+... ++|++|+|.|++||.++||||||||||||+..+.|+-.|++|.+..
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 467777777665433 6999999999999999999999999999999999999999986543
Q ss_pred EcCeEEEEccCcccc-cccHHHHHccCCCCC-----h--hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHH
Q 000746 701 IRGTVAYVPQISWIF-NATLRKNILFGSEFD-----P--AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQR 772 (1303)
Q Consensus 701 ~~~~iayv~Q~p~l~-~~TireNI~~g~~~~-----~--~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQR 772 (1303)
..+++++|+|.-.|. |.|-.||+....+.. + +.-.+-+++.+|.+-+.. -..+||||++||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~H-----------yP~qLSGGEQQR 154 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTH-----------YPAQLSGGEQQR 154 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCccccccc-----------CccccCchHHHH
Confidence 135799999998865 889999998654321 1 223445556665554444 346799999999
Q ss_pred HHHHHHHH---------------H----HHHhH------hcCCCEEEEEecCCCcccccCEEEEEeCCEEEE
Q 000746 773 VSMARAVF---------------N----SCIKE------ELRGKTRILVTNQLHFLPHVDRIILVSEGMIKE 819 (1303)
Q Consensus 773 iaLARAl~---------------~----~~i~~------~~~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~ 819 (1303)
||||||+. + +.+.+ .-.|.|.|+|||++.....|||++.|.+|++++
T Consensus 155 VAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 155 VALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceecc
Confidence 99999942 1 11111 126899999999999999999999999999975
No 295
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.93 E-value=2.8e-25 Score=255.56 Aligned_cols=167 Identities=22% Similarity=0.355 Sum_probs=129.5
Q ss_pred EeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE------------cCeEEEEccCccccc
Q 000746 649 SWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI------------RGTVAYVPQISWIFN 716 (1303)
Q Consensus 649 ~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~------------~~~iayv~Q~p~l~~ 716 (1303)
+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+ .+ +..++|+||++.++.
T Consensus 2 ~y~~-~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~~~~i~~~~q~~~~~~ 79 (302)
T TIGR01188 2 VYGD-FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTA-RVAGYDVVREPRKVRRSIGIVPQYASVDE 79 (302)
T ss_pred eeCC-eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEEcccCHHHHHhhcEEecCCCCCCC
Confidence 3543 469999999999999999999999999999999999999998743 33 235999999999886
Q ss_pred c-cHHHHHccCCC---CC----hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-------
Q 000746 717 A-TLRKNILFGSE---FD----PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN------- 781 (1303)
Q Consensus 717 ~-TireNI~~g~~---~~----~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~------- 781 (1303)
. |++||+.+... .+ +++..++++..++.+. ......+||||||||++||||++.
T Consensus 80 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la~al~~~p~lllL 148 (302)
T TIGR01188 80 DLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEA-----------ADRPVGTYSGGMRRRLDIAASLIHQPDVLFL 148 (302)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhH-----------hCCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 4 99999987421 12 1233444444444322 223446799999999999999642
Q ss_pred ----------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHh
Q 000746 782 ----------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 782 ----------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
+.+.+.. +|+|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 149 DEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 149 DEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 2333332 4799999999999875 599999999999999999998864
No 296
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.92 E-value=6.3e-25 Score=248.30 Aligned_cols=185 Identities=23% Similarity=0.315 Sum_probs=138.7
Q ss_pred cEEEEeeEEEeCC--------CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-----------
Q 000746 640 AVSIKNGNFSWDS--------KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----------- 700 (1303)
Q Consensus 640 ~i~~~~~~f~~~~--------~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----------- 700 (1303)
.++++|+++.|+. +.++++|+||+|++||+++|+||||||||||+++|.|+++|++|.+..
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 4789999999973 357999999999999999999999999999999999999999874321
Q ss_pred ----EcCeEEEEccCcc--cc-cccHHHHHccCC----CCChhhHHHHHHHHhhHHHhhcCCCCCCc-cccCCCCCCchH
Q 000746 701 ----IRGTVAYVPQISW--IF-NATLRKNILFGS----EFDPAKYWKTVDVSALQHDLDLLPDRDLT-EIGERGVNISGG 768 (1303)
Q Consensus 701 ----~~~~iayv~Q~p~--l~-~~TireNI~~g~----~~~~~~~~~vl~~~~l~~~i~~lp~g~~T-~ige~G~~LSGG 768 (1303)
.++.++|++|++. ++ +.|++||+.+.. ..+.++.. ..+.+.++.+ |.++ ........||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~~LS~G 155 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERL-----ARASEMLRAV--DLDDSVLDKRPPQLSGG 155 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHH-----HHHHHHHHHc--CCChhHhhCCCccCChH
Confidence 1346999999983 33 579999986531 11211111 1112223322 3332 334567789999
Q ss_pred HHHHHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecC
Q 000746 769 QKQRVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGS 822 (1303)
Q Consensus 769 QkQRiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~ 822 (1303)
||||++||||++. +.+.+.. .++|+|++||+++.+. .||++++|++|++++.|+
T Consensus 156 e~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~ 235 (268)
T PRK10419 156 QLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQP 235 (268)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCC
Confidence 9999999999642 3344443 2789999999999986 599999999999999999
Q ss_pred HHHHHhcch
Q 000746 823 FEELSKHGR 831 (1303)
Q Consensus 823 ~~~l~~~~~ 831 (1303)
++++.....
T Consensus 236 ~~~~~~~~~ 244 (268)
T PRK10419 236 VGDKLTFSS 244 (268)
T ss_pred hhhccCCCC
Confidence 999875443
No 297
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.92 E-value=4.1e-25 Score=236.49 Aligned_cols=189 Identities=26% Similarity=0.388 Sum_probs=146.3
Q ss_pred cEEEEeeEEEeCCCC-----------------------CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCC
Q 000746 640 AVSIKNGNFSWDSKS-----------------------PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKD 696 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~-----------------------~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g 696 (1303)
.|+++|++.-+..+. .-++|+||+|+.||+.+|.|-||||||||++++-|+++|+.|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 577888887775431 137899999999999999999999999999999999999998
Q ss_pred ceEE----------------EcCeEEEEccCcccc-cccHHHHHccCCCC---C-h---hhHHHHHHHHhhHHHhhcCCC
Q 000746 697 ASVV----------------IRGTVAYVPQISWIF-NATLRKNILFGSEF---D-P---AKYWKTVDVSALQHDLDLLPD 752 (1303)
Q Consensus 697 ~~~~----------------~~~~iayv~Q~p~l~-~~TireNI~~g~~~---~-~---~~~~~vl~~~~l~~~i~~lp~ 752 (1303)
.+.. .+.+++.|+|+--|+ +-||.||..||.+. + + ++..++++.++|+..-...
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~y-- 161 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKY-- 161 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcC--
Confidence 5432 245799999998877 77999999999763 2 2 3444566666666554443
Q ss_pred CCCccccCCCCCCchHHHHHHHHHHHHH--------HH-------HHhH-----hc-----CCCEEEEEecCCCc-cccc
Q 000746 753 RDLTEIGERGVNISGGQKQRVSMARAVF--------NS-------CIKE-----EL-----RGKTRILVTNQLHF-LPHV 806 (1303)
Q Consensus 753 g~~T~ige~G~~LSGGQkQRiaLARAl~--------~~-------~i~~-----~~-----~~~TvilvtH~~~~-l~~a 806 (1303)
...||||+|||+.||||+- ++ .|+. .+ -+||+|+|||+++. ++..
T Consensus 162 ---------p~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 162 ---------PNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred ---------cccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 3569999999999999942 11 1211 11 37999999999987 7889
Q ss_pred CEEEEEeCCEEEEecCHHHHHhcc--hHHHHHHHH
Q 000746 807 DRIILVSEGMIKEEGSFEELSKHG--RLFQKLMEN 839 (1303)
Q Consensus 807 D~ii~l~~G~i~~~g~~~~l~~~~--~~~~~l~~~ 839 (1303)
|||..|+||+|++.|+++|+..++ .+.++++++
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~~Fv~~ 267 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNPANDYVRDFVRN 267 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCccHHHHHHHHhc
Confidence 999999999999999999998653 444555543
No 298
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=4.7e-26 Score=221.75 Aligned_cols=156 Identities=24% Similarity=0.403 Sum_probs=123.4
Q ss_pred CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcCeEEEEccCcccccccHH
Q 000746 653 KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRGTVAYVPQISWIFNATLR 720 (1303)
Q Consensus 653 ~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~~iayv~Q~p~l~~~Tir 720 (1303)
+.++|+|+||++.+||.++|+||||||||||++.+..+.+|++|.... .|.+|+||.|.|.||.+||.
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe 94 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE 94 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence 347999999999999999999999999999999999999999974322 34579999999999999999
Q ss_pred HHHccCCC-----CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH---------------
Q 000746 721 KNILFGSE-----FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF--------------- 780 (1303)
Q Consensus 721 eNI~~g~~-----~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~--------------- 780 (1303)
||+.|.-. .|.+...+.++..++ +++.+..+..+||||+|||+||+|-+.
T Consensus 95 DNlifP~~~r~rr~dr~aa~~llar~~l----------~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsAL 164 (223)
T COG4619 95 DNLIFPWQIRNRRPDRAAALDLLARFAL----------PDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164 (223)
T ss_pred hccccchHHhccCCChHHHHHHHHHcCC----------chhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhc
Confidence 99999632 344333333332222 345566777899999999999999941
Q ss_pred --------HHHHhHhc--CCCEEEEEecCCCc-ccccCEEEEEeCCEEE
Q 000746 781 --------NSCIKEEL--RGKTRILVTNQLHF-LPHVDRIILVSEGMIK 818 (1303)
Q Consensus 781 --------~~~i~~~~--~~~TvilvtH~~~~-l~~aD~ii~l~~G~i~ 818 (1303)
++.|.... ++..+++|||+.+. ++.||+++-+..|++-
T Consensus 165 D~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~ 213 (223)
T COG4619 165 DESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAG 213 (223)
T ss_pred ChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCccc
Confidence 12232333 57899999999988 8999999999998763
No 299
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=4.8e-25 Score=255.86 Aligned_cols=181 Identities=16% Similarity=0.247 Sum_probs=134.9
Q ss_pred cEEEEeeEEEeCC---CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCC----CCCCceEEE-----------
Q 000746 640 AVSIKNGNFSWDS---KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP----PLKDASVVI----------- 701 (1303)
Q Consensus 640 ~i~~~~~~f~~~~---~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~----~~~g~~~~~----------- 701 (1303)
.++++|+++.|+. ...+++|+||+|++||+++|+|+||||||||+++|+|+.+ |++|. +.+
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~-i~~~g~~i~~~~~~ 81 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADR-MRFDDIDLLRLSPR 81 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceE-EEECCEECCcCCHH
Confidence 4789999999953 2368999999999999999999999999999999999986 45653 322
Q ss_pred ------cCeEEEEccCccc--c-cccHHHHHccC---CCC------C----hhhHHHHHHHHhhHHHhhcCCCCCCcccc
Q 000746 702 ------RGTVAYVPQISWI--F-NATLRKNILFG---SEF------D----PAKYWKTVDVSALQHDLDLLPDRDLTEIG 759 (1303)
Q Consensus 702 ------~~~iayv~Q~p~l--~-~~TireNI~~g---~~~------~----~~~~~~vl~~~~l~~~i~~lp~g~~T~ig 759 (1303)
++.|+||+|+|.. . ..||.+|+... ..+ + +++..+.++..+|.+.- ....
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~~~ 153 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHK--------DAMR 153 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChH--------HHHh
Confidence 1369999999973 2 46899999642 100 1 12333444444443210 1123
Q ss_pred CCCCCCchHHHHHHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEe
Q 000746 760 ERGVNISGGQKQRVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVS 813 (1303)
Q Consensus 760 e~G~~LSGGQkQRiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~ 813 (1303)
.....||||||||++||||+.. +.+.+.. .+.|+|+|||+++.+. .||+|++|+
T Consensus 154 ~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~ 233 (330)
T PRK15093 154 SFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLY 233 (330)
T ss_pred CCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEE
Confidence 4457899999999999999642 2333332 3789999999999985 599999999
Q ss_pred CCEEEEecCHHHHHhc
Q 000746 814 EGMIKEEGSFEELSKH 829 (1303)
Q Consensus 814 ~G~i~~~g~~~~l~~~ 829 (1303)
+|+|++.|+.+++.++
T Consensus 234 ~G~ive~g~~~~i~~~ 249 (330)
T PRK15093 234 CGQTVETAPSKELVTT 249 (330)
T ss_pred CCEEEEECCHHHHHhC
Confidence 9999999999998764
No 300
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=4e-25 Score=237.24 Aligned_cols=148 Identities=24% Similarity=0.362 Sum_probs=121.1
Q ss_pred cEEEEeeEEEeCC---CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCC--CCCCCceEEE---------cCeE
Q 000746 640 AVSIKNGNFSWDS---KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGEL--PPLKDASVVI---------RGTV 705 (1303)
Q Consensus 640 ~i~~~~~~f~~~~---~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~--~~~~g~~~~~---------~~~i 705 (1303)
.++++|+++.|++ +.++++|+||++++||+++|+||||||||||+++|+|.+ +|++|. +.+ +..+
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~-i~~~g~~~~~~~~~~i 81 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGE-ILINGRPLDKNFQRST 81 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceE-EEECCEehHHHhhhce
Confidence 5889999999975 246999999999999999999999999999999999986 367764 333 3469
Q ss_pred EEEccCccccc-ccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH---
Q 000746 706 AYVPQISWIFN-ATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN--- 781 (1303)
Q Consensus 706 ayv~Q~p~l~~-~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~--- 781 (1303)
+|++|++.++. .|++||+.++.. ++ +||||||||++||||++.
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~---------~~------------------------~LSgGe~qrv~la~al~~~p~ 128 (192)
T cd03232 82 GYVEQQDVHSPNLTVREALRFSAL---------LR------------------------GLSVEQRKRLTIGVELAAKPS 128 (192)
T ss_pred EEecccCccccCCcHHHHHHHHHH---------Hh------------------------cCCHHHhHHHHHHHHHhcCCc
Confidence 99999998876 599999986310 00 799999999999999542
Q ss_pred --------------------HHHhHhc-CCCEEEEEecCCCc--ccccCEEEEEeC-CEEEEec
Q 000746 782 --------------------SCIKEEL-RGKTRILVTNQLHF--LPHVDRIILVSE-GMIKEEG 821 (1303)
Q Consensus 782 --------------------~~i~~~~-~~~TvilvtH~~~~--l~~aD~ii~l~~-G~i~~~g 821 (1303)
+.+.+.. +++|+|++||+++. ...||+|++|++ |++++.|
T Consensus 129 vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 129 ILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 2333332 47999999999984 567999999998 9998765
No 301
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=9.2e-25 Score=221.50 Aligned_cols=180 Identities=28% Similarity=0.448 Sum_probs=140.1
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc-------------CeEEE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR-------------GTVAY 707 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~-------------~~iay 707 (1303)
|+.+|++++-.++ .+|++++|++++||.++|+||||+||||||++|.||+.|.+|. +.+. ++-|.
T Consensus 2 i~a~nls~~~~Gr-~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~-v~~~g~~l~~~~~~~lA~~raV 79 (259)
T COG4559 2 IRAENLSYSLAGR-RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGE-VTLNGVPLNSWPPEELARHRAV 79 (259)
T ss_pred eeeeeeEEEeecc-eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCe-EeeCCcChhhCCHHHHHHHhhh
Confidence 6788999888654 6999999999999999999999999999999999999998874 4332 35789
Q ss_pred EccCccc-ccccHHHHHccCC-CC----ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH
Q 000746 708 VPQISWI-FNATLRKNILFGS-EF----DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN 781 (1303)
Q Consensus 708 v~Q~p~l-~~~TireNI~~g~-~~----~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~ 781 (1303)
.||+..+ |.-|++|-+.+|+ |. +.++-.++.+.|-..-|+..+...+ -..|||||+||+.|||.+-+
T Consensus 80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~-------y~~LSGGEqQRVqlARvLaQ 152 (259)
T COG4559 80 LPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRD-------YRTLSGGEQQRVQLARVLAQ 152 (259)
T ss_pred cccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccc-------hhhcCchHHHHHHHHHHHHH
Confidence 9999876 8999999999986 33 2223334444444444555554333 24699999999999999532
Q ss_pred -------------------------H----HHhHh-cCCCEEEEEecCCCc-ccccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 782 -------------------------S----CIKEE-LRGKTRILVTNQLHF-LPHVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 782 -------------------------~----~i~~~-~~~~TvilvtH~~~~-l~~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
. ..++. .+|..|+.|-|+++. ..+||+|++|.+|+++..|++++....
T Consensus 153 l~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt~ 231 (259)
T COG4559 153 LWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTD 231 (259)
T ss_pred ccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcCH
Confidence 0 11111 257899999999998 468999999999999999999998754
No 302
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.92 E-value=4.5e-22 Score=217.94 Aligned_cols=313 Identities=15% Similarity=0.206 Sum_probs=211.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 973 TVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVL 1052 (1303)
Q Consensus 973 ~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~ 1052 (1303)
+.+.+.......++.+...++|.++.++++..|+.-+++-.+++++.++++|+..|. .-...+..+....+..+++...
T Consensus 63 ~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~IS-f~~s~lp~~~qa~il~l~s~aY 141 (546)
T COG4615 63 VSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNIS-FAFSRLPELVQAIILTLGSAAY 141 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhccccccee-ehHhhhHHHHHHHHHHHHHHHH
Confidence 344556667788999999999999999999999999999999999999999999987 3334456667777777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHH------HH
Q 000746 1053 IGIVSTISLWAIMPLLILFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKING------KS 1126 (1303)
Q Consensus 1053 i~~~~~~~~~~~~pl~~~~~~i~~~~~~~~r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~------~~ 1126 (1303)
+++.+|.+..+.+..+++..+...+..++.-+-.+...++...++++++-.++|-+..+......+...... ..
T Consensus 142 LayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~ 221 (546)
T COG4615 142 LAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEY 221 (546)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHH
Confidence 888888776655555544444443333333333344455667889999999999999988765433322211 11
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000746 1127 MDNNIRFTLANTSSNRWLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAEN 1206 (1303)
Q Consensus 1127 ~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~ 1206 (1303)
-++.............|.++.+-.+.++++++..... ..+.. .+.+ +....+.+-.++.+++.....+-+
T Consensus 222 r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~~-----w~st~--~a~t---ivlvlLflr~pL~s~vgilP~l~~ 291 (546)
T COG4615 222 RHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSLG-----WASTN--VAAT---IVLVLLFLRTPLLSAVGILPTLLT 291 (546)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----cchhh--HHHH---HHHHHHHHhhHHHHHHhhhhHHHH
Confidence 1111111111223345655544333333333222111 11111 1111 222244566788888888888889
Q ss_pred hhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHH
Q 000746 1207 SLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSM 1286 (1303)
Q Consensus 1207 ~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTL 1286 (1303)
+.++.+||.++..-|..+ + -....+.|+| ..||++||.|+|.++. --+.-||++|+.||.|=|+|..||||||+
T Consensus 292 AqvA~~kiakle~~~~~a-~-~~~~q~~p~~---~~lelrnvrfay~~~~-FhvgPiNl~ikrGelvFliG~NGsGKST~ 365 (546)
T COG4615 292 AQVAFNKIAKLELAPYKA-D-FPRPQAFPDW---KTLELRNVRFAYQDNA-FHVGPINLTIKRGELVFLIGGNGSGKSTL 365 (546)
T ss_pred HHHHHHHHHHhhcCCccc-c-CCCCCcCCcc---cceeeeeeeeccCccc-ceecceeeEEecCcEEEEECCCCCcHHHH
Confidence 999999998875422211 1 1112233345 3699999999997653 46888999999999999999999999999
Q ss_pred HHHHhhcccCCCCeee
Q 000746 1287 LNALFRIVELERGENI 1302 (1303)
Q Consensus 1287 i~lL~R~yd~~~G~I~ 1302 (1303)
+++|.|+|.|++|+|+
T Consensus 366 ~~LLtGL~~PqsG~I~ 381 (546)
T COG4615 366 AMLLTGLYQPQSGEIL 381 (546)
T ss_pred HHHHhcccCCCCCcee
Confidence 9999999999999996
No 303
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=7.2e-25 Score=230.83 Aligned_cols=134 Identities=38% Similarity=0.704 Sum_probs=116.4
Q ss_pred EEEEeeEEEeCCC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-------------cCeEE
Q 000746 641 VSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-------------RGTVA 706 (1303)
Q Consensus 641 i~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~-------------~~~ia 706 (1303)
++++|+++.|+++ .++++|+||++++|+.++|+||||||||||+++|.|+++|.+|.. .+ ++.++
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI-LIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEE-EECCEEhhhcCHHHHHhhEE
Confidence 4689999999754 269999999999999999999999999999999999999998743 32 23599
Q ss_pred EEccCcccccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-----
Q 000746 707 YVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN----- 781 (1303)
Q Consensus 707 yv~Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~----- 781 (1303)
|++|++.+++.|+.||+ ||||||||++||||+..
T Consensus 80 ~~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~~p~ll 118 (171)
T cd03228 80 YVPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPIL 118 (171)
T ss_pred EEcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999998 99999999999999642
Q ss_pred ------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEeCCE
Q 000746 782 ------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVSEGM 816 (1303)
Q Consensus 782 ------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~~G~ 816 (1303)
+.+.+..+++|+|++||+++.++.||++++|++|+
T Consensus 119 llDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 119 ILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 33444445799999999999988899999999984
No 304
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.92 E-value=1.1e-24 Score=247.64 Aligned_cols=178 Identities=27% Similarity=0.476 Sum_probs=143.2
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-----------EcCeEEEE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-----------IRGTVAYV 708 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-----------~~~~iayv 708 (1303)
.++++|++..|+.+..+|+||||+|++|++++++||||||||||+++|+|++.|++|.+.. .+++|||+
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~ 83 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYV 83 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEE
Confidence 4788999999984457999999999999999999999999999999999999998874322 13469999
Q ss_pred ccCcccc-cccHHHHHccCCC-------CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH
Q 000746 709 PQISWIF-NATLRKNILFGSE-------FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF 780 (1303)
Q Consensus 709 ~Q~p~l~-~~TireNI~~g~~-------~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~ 780 (1303)
||+|.++ +-|++||+.|... .++++..++++..+|.++- ..+...||+|||||++||+|++
T Consensus 84 ~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl~ia~aL~ 152 (293)
T COG1131 84 PQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRLSIALALL 152 (293)
T ss_pred ccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHHHHHHHHh
Confidence 9999877 5699999987432 2345666777766665411 2345679999999999999964
Q ss_pred H-----------------------HHHhHhc-CC-CEEEEEecCCCcccc-cCEEEEEeCCEEEEecCHHHHHh
Q 000746 781 N-----------------------SCIKEEL-RG-KTRILVTNQLHFLPH-VDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 781 ~-----------------------~~i~~~~-~~-~TvilvtH~~~~l~~-aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
. +.+++.. ++ +||+++||.++.+.. ||+|++|++|+++..|+.+++..
T Consensus 153 ~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~ 226 (293)
T COG1131 153 HDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226 (293)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 2 3344443 34 799999999999766 99999999999999999988754
No 305
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.92 E-value=1.7e-24 Score=243.53 Aligned_cols=185 Identities=21% Similarity=0.342 Sum_probs=136.8
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE---------E---------
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV---------I--------- 701 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~---------~--------- 701 (1303)
.++++|+++.|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|.+|.+.. +
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (253)
T TIGR02323 3 LLQVSGLSKSYGG-GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81 (253)
T ss_pred eEEEeeeEEEeCC-ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHH
Confidence 5899999999975 46899999999999999999999999999999999999999874422 1
Q ss_pred ---cCeEEEEccCcc--c-ccccHHHHHccCC-CCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHH
Q 000746 702 ---RGTVAYVPQISW--I-FNATLRKNILFGS-EFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVS 774 (1303)
Q Consensus 702 ---~~~iayv~Q~p~--l-~~~TireNI~~g~-~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRia 774 (1303)
++.++|++|+|. + +..|+.+|+.+.. .+....+.+ . .....+.++.++-+ .+.......+||||||||++
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~-~~~~~~~l~~l~l~-~~~~~~~~~~LSgG~~qrv~ 158 (253)
T TIGR02323 82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGN-I-RAAAHDWLEEVEID-PTRIDDLPRAFSGGMQQRLQ 158 (253)
T ss_pred HhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHH-H-HHHHHHHHHHcCCC-hhhhhcCchhcCHHHHHHHH
Confidence 134899999984 2 3458899985321 000000000 0 01223344444321 23456677899999999999
Q ss_pred HHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHh
Q 000746 775 MARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 775 LARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
||||++. +.+.+.. .+.|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 159 laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~~~~~ 238 (253)
T TIGR02323 159 IARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLD 238 (253)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHHHHhc
Confidence 9999542 3344433 3799999999999987 599999999999999999988864
No 306
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=1.6e-25 Score=224.95 Aligned_cols=185 Identities=25% Similarity=0.421 Sum_probs=141.6
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-------------EcCeEE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-------------IRGTVA 706 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-------------~~~~ia 706 (1303)
.+..+|+..+|..+ ++++++||++++||+|++.||||+||||....+.|+.+|++|.+.. -|-.|+
T Consensus 4 ~L~a~~l~K~y~kr-~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGig 82 (243)
T COG1137 4 TLVAENLAKSYKKR-KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIG 82 (243)
T ss_pred EEEehhhhHhhCCe-eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcc
Confidence 47788999999754 7999999999999999999999999999999999999999975432 123599
Q ss_pred EEccCccccc-ccHHHHHccCCCCCh---hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH--
Q 000746 707 YVPQISWIFN-ATLRKNILFGSEFDP---AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF-- 780 (1303)
Q Consensus 707 yv~Q~p~l~~-~TireNI~~g~~~~~---~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~-- 780 (1303)
|.||+|-+|. -||+|||..--++.+ +.-.+-.+..+|.+++.. ...-...|.+||||||.|+-||||+.
T Consensus 83 YLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i-----~hlr~~~a~sLSGGERRR~EIARaLa~~ 157 (243)
T COG1137 83 YLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHI-----THLRDSKAYSLSGGERRRVEIARALAAN 157 (243)
T ss_pred cccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhch-----HHHhcCcccccccchHHHHHHHHHHhcC
Confidence 9999999995 499999986554322 211222222234444322 22234678999999999999999952
Q ss_pred ---------------------HHHHhHhc-CCCEEEEEecCCC-cccccCEEEEEeCCEEEEecCHHHHHhcc
Q 000746 781 ---------------------NSCIKEEL-RGKTRILVTNQLH-FLPHVDRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 781 ---------------------~~~i~~~~-~~~TvilvtH~~~-~l~~aD~ii~l~~G~i~~~g~~~~l~~~~ 830 (1303)
++.+.... +|--|++.-|++. ++.-|||.+++.+|+|..+|+++|+.++.
T Consensus 158 P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~ 230 (243)
T COG1137 158 PKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230 (243)
T ss_pred CCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence 22333322 5777888889985 58999999999999999999999998653
No 307
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=1.1e-24 Score=229.80 Aligned_cols=136 Identities=29% Similarity=0.557 Sum_probs=115.3
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-----------EcCeEEEEc
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-----------IRGTVAYVP 709 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-----------~~~~iayv~ 709 (1303)
++++|+++.|++. ++|+|+||++++||+++|+||||||||||+++|.|+++|.+|.... .++.++|++
T Consensus 1 l~~~~l~~~~~~~-~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (173)
T cd03230 1 IEVRNLSKRYGKK-TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLP 79 (173)
T ss_pred CEEEEEEEEECCe-eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEe
Confidence 4689999999753 6999999999999999999999999999999999999998874321 134699999
Q ss_pred cCcccccc-cHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-------
Q 000746 710 QISWIFNA-TLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN------- 781 (1303)
Q Consensus 710 Q~p~l~~~-TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~------- 781 (1303)
|++.++.+ |++||+. ||||||||++||||+..
T Consensus 80 q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~~p~illl 119 (173)
T cd03230 80 EEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLHDPELLIL 119 (173)
T ss_pred cCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99998875 9999984 99999999999999642
Q ss_pred ----------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEE
Q 000746 782 ----------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMI 817 (1303)
Q Consensus 782 ----------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i 817 (1303)
+.+.+.. ++.|+|++||+.+.+. .||++++|++|++
T Consensus 120 DEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 120 DEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 2343332 4689999999999877 6999999999974
No 308
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=2.1e-24 Score=233.53 Aligned_cols=155 Identities=25% Similarity=0.357 Sum_probs=121.0
Q ss_pred cEEEEeeEEEeCC---CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCC---CCCCceEE-----------Ec
Q 000746 640 AVSIKNGNFSWDS---KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP---PLKDASVV-----------IR 702 (1303)
Q Consensus 640 ~i~~~~~~f~~~~---~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~---~~~g~~~~-----------~~ 702 (1303)
.+.++|++|.|+. +.++|+|+||++++||+++|+||||||||||+++|.|+++ |++|.+.. .+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 4789999999974 3479999999999999999999999999999999999998 77874321 23
Q ss_pred CeEEEEccCccccc-ccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH
Q 000746 703 GTVAYVPQISWIFN-ATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN 781 (1303)
Q Consensus 703 ~~iayv~Q~p~l~~-~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~ 781 (1303)
+.++|++|++.++. .|++||+.++.... ..+....||||||||++||||++.
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---------------------------~~~~~~~LS~Ge~qrl~laral~~ 135 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALRCK---------------------------GNEFVRGISGGERKRVSIAEALVS 135 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhhhc---------------------------cccchhhCCHHHHHHHHHHHHHhh
Confidence 46999999998886 59999998653110 123446799999999999999642
Q ss_pred -----------------------HHHhHhcC--CCEEEEEecC-CCc-ccccCEEEEEeCCEEEEec
Q 000746 782 -----------------------SCIKEELR--GKTRILVTNQ-LHF-LPHVDRIILVSEGMIKEEG 821 (1303)
Q Consensus 782 -----------------------~~i~~~~~--~~TvilvtH~-~~~-l~~aD~ii~l~~G~i~~~g 821 (1303)
+.+++..+ +.|+|+++|+ .+. ...||++++|++|++++.|
T Consensus 136 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 136 RASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 23444332 5677776665 455 4679999999999998764
No 309
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.92 E-value=7.9e-24 Score=237.59 Aligned_cols=185 Identities=22% Similarity=0.264 Sum_probs=140.6
Q ss_pred cEEEEeeEEEeCCC-------------------CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE
Q 000746 640 AVSIKNGNFSWDSK-------------------SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV 700 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~-------------------~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~ 700 (1303)
.|+++|++..|... .++|+|+||+|++|++++|+||||||||||+++|+|+++|.+| .+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G-~I~ 82 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVG-KVD 82 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCce-EEE
Confidence 46777777776431 2589999999999999999999999999999999999999987 567
Q ss_pred EcCeEEEEccCcccc-cccHHHHHccCC---CCChhhHHH----HHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHH
Q 000746 701 IRGTVAYVPQISWIF-NATLRKNILFGS---EFDPAKYWK----TVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQR 772 (1303)
Q Consensus 701 ~~~~iayv~Q~p~l~-~~TireNI~~g~---~~~~~~~~~----vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQR 772 (1303)
+.+.+++++|++.+. ..|++||+.++. .++.++..+ +++..++. ..+.....+||||||||
T Consensus 83 ~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~Gq~qr 151 (264)
T PRK13546 83 RNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELG-----------EFIYQPVKKYSSGMRAK 151 (264)
T ss_pred ECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-----------hhhcCCcccCCHHHHHH
Confidence 888899999999877 469999997642 233333322 22222222 22344567899999999
Q ss_pred HHHHHHHHH-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHH
Q 000746 773 VSMARAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELS 827 (1303)
Q Consensus 773 iaLARAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~ 827 (1303)
++||||++. +.+.+.. .++|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 152 v~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (264)
T PRK13546 152 LGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVL 231 (264)
T ss_pred HHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHH
Confidence 999999642 1233322 4899999999999876 59999999999999999999988
Q ss_pred hcchHHHHH
Q 000746 828 KHGRLFQKL 836 (1303)
Q Consensus 828 ~~~~~~~~l 836 (1303)
+....|.+.
T Consensus 232 ~~~~~~~~~ 240 (264)
T PRK13546 232 PKYEAFLND 240 (264)
T ss_pred HHhHHHHHH
Confidence 754444333
No 310
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=1.5e-24 Score=237.53 Aligned_cols=162 Identities=25% Similarity=0.333 Sum_probs=124.5
Q ss_pred eeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----------------EcCeEEEE
Q 000746 645 NGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----------------IRGTVAYV 708 (1303)
Q Consensus 645 ~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----------------~~~~iayv 708 (1303)
|++++|++. .+ |+||++++ |+++|+||||||||||+++|+|+++|++|.+.. .++.++|+
T Consensus 5 ~l~~~~~~~-~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~ 80 (214)
T cd03297 5 DIEKRLPDF-TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLV 80 (214)
T ss_pred eeeEecCCe-ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEE
Confidence 889999764 34 99999999 999999999999999999999999998874321 12369999
Q ss_pred ccCccccc-ccHHHHHccCCC-CC----hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-
Q 000746 709 PQISWIFN-ATLRKNILFGSE-FD----PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN- 781 (1303)
Q Consensus 709 ~Q~p~l~~-~TireNI~~g~~-~~----~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~- 781 (1303)
+|++.++. .|++||+.++.. .+ +++..+.++..++ .........+||||||||++||||++.
T Consensus 81 ~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv~la~al~~~ 149 (214)
T cd03297 81 FQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGL-----------DHLLNRYPAQLSGGEKQRVALARALAAQ 149 (214)
T ss_pred ecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCC-----------HhHhhcCcccCCHHHHHHHHHHHHHhcC
Confidence 99999985 699999987642 12 1223333333333 233445667899999999999999542
Q ss_pred ----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEec
Q 000746 782 ----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEG 821 (1303)
Q Consensus 782 ----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g 821 (1303)
+.+.+.. .++|+|++||+++.+. .||++++|++|+++++|
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 150 PELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 2333332 2789999999999875 69999999999998765
No 311
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.92 E-value=3e-24 Score=252.25 Aligned_cols=183 Identities=24% Similarity=0.391 Sum_probs=139.0
Q ss_pred CCCcEEEEeeEEEeCC------C----CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------
Q 000746 637 ELPAVSIKNGNFSWDS------K----SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------ 700 (1303)
Q Consensus 637 ~~~~i~~~~~~f~~~~------~----~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------ 700 (1303)
..+.++++|++..|.. + ..+++||||++++||+++|||+||||||||.++|+|+.+|++|.+..
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~ 356 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLD 356 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccc
Confidence 3456889999999974 1 15799999999999999999999999999999999999997764332
Q ss_pred --------EcCeEEEEccCcccc---cccHHHHHccC----CCCC-h---hhHHHHHHHHhhHHHhhcCCCCCCccccCC
Q 000746 701 --------IRGTVAYVPQISWIF---NATLRKNILFG----SEFD-P---AKYWKTVDVSALQHDLDLLPDRDLTEIGER 761 (1303)
Q Consensus 701 --------~~~~iayv~Q~p~l~---~~TireNI~~g----~~~~-~---~~~~~vl~~~~l~~~i~~lp~g~~T~ige~ 761 (1303)
.+.++-++.|+|.-- ..||+++|.-. .... . ++..+.++..+|.++ .....
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~----------~l~ry 426 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPE----------FLDRY 426 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHH----------HHhcC
Confidence 124789999999742 57999999732 1221 1 223334555555432 23445
Q ss_pred CCCCchHHHHHHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCcccc-cCEEEEEeCC
Q 000746 762 GVNISGGQKQRVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLPH-VDRIILVSEG 815 (1303)
Q Consensus 762 G~~LSGGQkQRiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~~-aD~ii~l~~G 815 (1303)
...||||||||||||||+.. +.+.+.. -|.|.|+|||+++.+++ ||+|++|++|
T Consensus 427 P~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G 506 (539)
T COG1123 427 PHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDG 506 (539)
T ss_pred chhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECC
Confidence 67899999999999999531 1122222 37999999999999875 9999999999
Q ss_pred EEEEecCHHHHHhc
Q 000746 816 MIKEEGSFEELSKH 829 (1303)
Q Consensus 816 ~i~~~g~~~~l~~~ 829 (1303)
+|+|.|+.+++.++
T Consensus 507 ~iVE~G~~~~v~~~ 520 (539)
T COG1123 507 RIVEEGPTEKVFEN 520 (539)
T ss_pred eEEEeCCHHHHhcC
Confidence 99999999888765
No 312
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.91 E-value=3.2e-24 Score=264.75 Aligned_cols=177 Identities=24% Similarity=0.404 Sum_probs=138.6
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc--------------Ce
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR--------------GT 704 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~--------------~~ 704 (1303)
+.++++|++++|++ .++|+|+||++++|++++|+||||||||||+++|.|+++|++|.+ .+. ..
T Consensus 10 ~~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 10 PLLCARSISKQYSG-VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTL-EIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred ceEEEEeEEEEeCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEECCCCCHHHHHhCC
Confidence 35999999999975 469999999999999999999999999999999999999998753 332 35
Q ss_pred EEEEccCccccc-ccHHHHHccCCCCC---hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH
Q 000746 705 VAYVPQISWIFN-ATLRKNILFGSEFD---PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF 780 (1303)
Q Consensus 705 iayv~Q~p~l~~-~TireNI~~g~~~~---~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~ 780 (1303)
++|++|++.++. .|++||+.++.... +++..++++..++.+ .......+||||||||++||||+.
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrv~la~aL~ 156 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQL-----------DLDSSAGSLEVADRQIVEILRGLM 156 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCc-----------cccCChhhCCHHHHHHHHHHHHHH
Confidence 999999998875 59999999875321 123333343333321 122345679999999999999964
Q ss_pred H-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHh
Q 000746 781 N-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 781 ~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
. +.+++.. +++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 157 RDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 2 2333332 4789999999999875 599999999999999999988754
No 313
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=2.3e-24 Score=228.51 Aligned_cols=137 Identities=31% Similarity=0.514 Sum_probs=115.9
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE--------------EcCeEE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV--------------IRGTVA 706 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~--------------~~~~ia 706 (1303)
++++|+++.|++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .+..++
T Consensus 1 i~~~~l~~~~~~-~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (178)
T cd03229 1 LELKNVSKRYGQ-KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIG 79 (178)
T ss_pred CEEEEEEEEECC-eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEE
Confidence 468999999975 46999999999999999999999999999999999999998874321 124699
Q ss_pred EEccCccccc-ccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH----
Q 000746 707 YVPQISWIFN-ATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN---- 781 (1303)
Q Consensus 707 yv~Q~p~l~~-~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~---- 781 (1303)
|++|+|.++. .|++||+.+. ||||||||++||||+..
T Consensus 80 ~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p~l 121 (178)
T cd03229 80 MVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDPDV 121 (178)
T ss_pred EEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHCCCCE
Confidence 9999999885 5999999764 99999999999999542
Q ss_pred -------------------HHHhHhcC--CCEEEEEecCCCccc-ccCEEEEEeCCE
Q 000746 782 -------------------SCIKEELR--GKTRILVTNQLHFLP-HVDRIILVSEGM 816 (1303)
Q Consensus 782 -------------------~~i~~~~~--~~TvilvtH~~~~l~-~aD~ii~l~~G~ 816 (1303)
+.+.+..+ ++|+|++||+++.+. .+|++++|++|+
T Consensus 122 lilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 122 LLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 23333332 689999999999987 699999999984
No 314
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.91 E-value=9.2e-24 Score=249.30 Aligned_cols=185 Identities=25% Similarity=0.334 Sum_probs=140.8
Q ss_pred CcEEEEeeEEEeCCC--CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcCeEEEEccCcccc-
Q 000746 639 PAVSIKNGNFSWDSK--SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWIF- 715 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~--~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~~iayv~Q~p~l~- 715 (1303)
+.++++|++|.|++. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++| .+.+.+.-.++.+.+.+.
T Consensus 20 ~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sG-eI~I~G~~~~i~~~~~l~~ 98 (549)
T PRK13545 20 PFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKG-TVDIKGSAALIAISSGLNG 98 (549)
T ss_pred ceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCce-EEEECCEeeeEEeccccCC
Confidence 358899999999764 3689999999999999999999999999999999999999886 566776655666665555
Q ss_pred cccHHHHHccCC---CCChhhH----HHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-------
Q 000746 716 NATLRKNILFGS---EFDPAKY----WKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN------- 781 (1303)
Q Consensus 716 ~~TireNI~~g~---~~~~~~~----~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~------- 781 (1303)
..|++||+.++. ..++++. .++++.+++.+.+ .....+||||||||++||||+..
T Consensus 99 ~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~l-----------d~~~~~LSGGQrQRVaLArAL~~~P~LLLL 167 (549)
T PRK13545 99 QLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFI-----------YQPVKTYSSGMKSRLGFAISVHINPDILVI 167 (549)
T ss_pred CCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHh-----------hCCcccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 459999998643 2333332 2344444443322 23456899999999999999642
Q ss_pred ----------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHhcchHHHH
Q 000746 782 ----------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKHGRLFQK 835 (1303)
Q Consensus 782 ----------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~~ 835 (1303)
+.+.+.. +++|+|++||+++.+. .||++++|++|++++.|+++++...-..|.+
T Consensus 168 DEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~~~~~~~ 239 (549)
T PRK13545 168 DEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYDEFLK 239 (549)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhhHHHHHH
Confidence 2233322 4789999999999875 5999999999999999999998765444443
No 315
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.91 E-value=7.7e-25 Score=220.38 Aligned_cols=178 Identities=22% Similarity=0.347 Sum_probs=139.1
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-----------EcCeEEEEc
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-----------IRGTVAYVP 709 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-----------~~~~iayv~ 709 (1303)
+++.+++.+|++...+++|+||+++.||+++|.|+||+||||+|+.|.+++.|++|.+.. .+++||.++
T Consensus 2 l~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~ 81 (245)
T COG4555 2 LEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLF 81 (245)
T ss_pred eeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceec
Confidence 578899999987556899999999999999999999999999999999999999985432 467899998
Q ss_pred cCcccc-cccHHHHHccCCC-C--Ch----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH
Q 000746 710 QISWIF-NATLRKNILFGSE-F--DP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN 781 (1303)
Q Consensus 710 Q~p~l~-~~TireNI~~g~~-~--~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~ 781 (1303)
-+.-++ ..|+||||.|... + .. .+..+..+.-+|.+- ...+-.++|-|+||||+||||+++
T Consensus 82 ~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~-----------~~rRv~~~S~G~kqkV~iARAlvh 150 (245)
T COG4555 82 GERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEY-----------LDRRVGEFSTGMKQKVAIARALVH 150 (245)
T ss_pred CCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHH-----------HHHHHhhhchhhHHHHHHHHHHhc
Confidence 776676 5699999996532 2 22 233333333333322 223445699999999999999653
Q ss_pred -----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 782 -----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 782 -----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
+.+.... .|++||+.||.++.++ .||+|+++.+|+++..|+.+++.++
T Consensus 151 ~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 151 DPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred CCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 2233332 4899999999999987 7999999999999999999988653
No 316
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.91 E-value=4.7e-24 Score=268.49 Aligned_cols=181 Identities=18% Similarity=0.269 Sum_probs=137.8
Q ss_pred CcEEEEeeEEEeCC----------CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE--------
Q 000746 639 PAVSIKNGNFSWDS----------KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-------- 700 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~----------~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-------- 700 (1303)
+.++++|+++.|+. ..++++|+||+|++||+++|+|+||||||||+++|+|+++|++|.+..
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~ 391 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTL 391 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcC
Confidence 46899999999962 135899999999999999999999999999999999999999875432
Q ss_pred -------EcCeEEEEccCcc--cc-cccHHHHHccCC---CC-Ch----hhHHHHHHHHhhHHHhhcCCCCCCccccCCC
Q 000746 701 -------IRGTVAYVPQISW--IF-NATLRKNILFGS---EF-DP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERG 762 (1303)
Q Consensus 701 -------~~~~iayv~Q~p~--l~-~~TireNI~~g~---~~-~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G 762 (1303)
.+..|+|++|+|. ++ +.||.||+.++. .. +. ++..+.++.+++.++ ......
T Consensus 392 ~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~----------~~~~~~ 461 (623)
T PRK10261 392 SPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPE----------HAWRYP 461 (623)
T ss_pred CHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHH----------HhhCCc
Confidence 1236999999984 55 569999997632 11 11 223344444444211 122344
Q ss_pred CCCchHHHHHHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCE
Q 000746 763 VNISGGQKQRVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGM 816 (1303)
Q Consensus 763 ~~LSGGQkQRiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~ 816 (1303)
.+||||||||++||||+.. +.+.+.. .+.|+|+|||+++.+. .||+|++|++|+
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQ 541 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 6799999999999999542 2333332 3789999999999875 599999999999
Q ss_pred EEEecCHHHHHhc
Q 000746 817 IKEEGSFEELSKH 829 (1303)
Q Consensus 817 i~~~g~~~~l~~~ 829 (1303)
|++.|+.+++..+
T Consensus 542 iv~~g~~~~i~~~ 554 (623)
T PRK10261 542 IVEIGPRRAVFEN 554 (623)
T ss_pred EEEecCHHHHhcC
Confidence 9999999998754
No 317
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.91 E-value=3.1e-24 Score=228.45 Aligned_cols=137 Identities=30% Similarity=0.539 Sum_probs=114.6
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-------------EcCeEE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-------------IRGTVA 706 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-------------~~~~ia 706 (1303)
.++++|++++| +++|+||++++|++++|+|+||||||||+++|.|+++|++|.... .++.++
T Consensus 4 ~l~~~~l~~~~-----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (182)
T cd03215 4 VLEVRGLSVKG-----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIA 78 (182)
T ss_pred EEEEeccEEEe-----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeE
Confidence 58999999998 899999999999999999999999999999999999999874321 124699
Q ss_pred EEccCc----ccccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-
Q 000746 707 YVPQIS----WIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN- 781 (1303)
Q Consensus 707 yv~Q~p----~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~- 781 (1303)
|++|++ ..++.|++||+.++.. ||||||||++||||++.
T Consensus 79 ~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------LS~G~~qrl~la~al~~~ 122 (182)
T cd03215 79 YVPEDRKREGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVVLARWLARD 122 (182)
T ss_pred EecCCcccCcccCCCcHHHHHHHHhh------------------------------------cCHHHHHHHHHHHHHccC
Confidence 999985 3446899999987421 99999999999999532
Q ss_pred ----------------------HHHhHhc-CCCEEEEEecCCCcccc-cCEEEEEeCCEE
Q 000746 782 ----------------------SCIKEEL-RGKTRILVTNQLHFLPH-VDRIILVSEGMI 817 (1303)
Q Consensus 782 ----------------------~~i~~~~-~~~TvilvtH~~~~l~~-aD~ii~l~~G~i 817 (1303)
+.+.+.. +++|+|++||+++.+.. ||++++|++|++
T Consensus 123 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 123 PRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred CCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 3344432 47999999999988765 999999999974
No 318
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.91 E-value=1e-23 Score=237.13 Aligned_cols=175 Identities=21% Similarity=0.263 Sum_probs=130.5
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcC--CCCCCCceEE----E--------c-Ce
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGE--LPPLKDASVV----I--------R-GT 704 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~--~~~~~g~~~~----~--------~-~~ 704 (1303)
.++++|+++.|++ .++|+|+||++++||+++|+|+||||||||+++|+|+ ++|++|.... + + ..
T Consensus 7 ~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 85 (252)
T CHL00131 7 ILEIKNLHASVNE-NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLG 85 (252)
T ss_pred eEEEEeEEEEeCC-EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheee
Confidence 5899999999974 4699999999999999999999999999999999998 5788874321 0 1 14
Q ss_pred EEEEccCcccccc-cHHHHHccCCCC-------C---h----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCC-CCchH
Q 000746 705 VAYVPQISWIFNA-TLRKNILFGSEF-------D---P----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGV-NISGG 768 (1303)
Q Consensus 705 iayv~Q~p~l~~~-TireNI~~g~~~-------~---~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~-~LSGG 768 (1303)
++|++|++.++.+ |+++|+.++... + . +++.++++.+++.+ +....... .||||
T Consensus 86 ~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~~LSgG 155 (252)
T CHL00131 86 IFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDP----------SFLSRNVNEGFSGG 155 (252)
T ss_pred EEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCch----------hhhccccccCCCHH
Confidence 8899999998865 899998764210 1 1 11222233222221 11223333 49999
Q ss_pred HHHHHHHHHHHHH-----------------------HHHhHhc-CCCEEEEEecCCCcccc--cCEEEEEeCCEEEEecC
Q 000746 769 QKQRVSMARAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLPH--VDRIILVSEGMIKEEGS 822 (1303)
Q Consensus 769 QkQRiaLARAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~~--aD~ii~l~~G~i~~~g~ 822 (1303)
||||++||||++. +.+.+.. +++|+|++||+++.+.. +|++++|++|++++.|+
T Consensus 156 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~ 235 (252)
T CHL00131 156 EKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGD 235 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecC
Confidence 9999999999642 2344433 47999999999998864 89999999999999998
Q ss_pred HHH
Q 000746 823 FEE 825 (1303)
Q Consensus 823 ~~~ 825 (1303)
++.
T Consensus 236 ~~~ 238 (252)
T CHL00131 236 AEL 238 (252)
T ss_pred hhh
Confidence 874
No 319
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.91 E-value=3.5e-24 Score=224.61 Aligned_cols=185 Identities=23% Similarity=0.358 Sum_probs=139.7
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc--------------CeE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR--------------GTV 705 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~--------------~~i 705 (1303)
.+++++++.+|.+ -.+++|+||++++||+++++||||+||||++++|.|.|+|++|. +.++ ..|
T Consensus 4 lL~v~~l~k~FGG-l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~-v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 4 LLEVRGLSKRFGG-LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGT-VIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeeccceeecCC-EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCce-EEECCcccCCCCHHHHHhccc
Confidence 3678999999975 36899999999999999999999999999999999999999874 4333 358
Q ss_pred EEEccCccccc-ccHHHHHccCCCCC--------h----hhHHHHHHH-HhhHHHhhcCCCCCCccccCCCCCCchHHHH
Q 000746 706 AYVPQISWIFN-ATLRKNILFGSEFD--------P----AKYWKTVDV-SALQHDLDLLPDRDLTEIGERGVNISGGQKQ 771 (1303)
Q Consensus 706 ayv~Q~p~l~~-~TireNI~~g~~~~--------~----~~~~~vl~~-~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQ 771 (1303)
+--+|.+-+|. .|+-||+..+.... . .+..++.+. -.+.+.+ |+.-.-.+...+||+||+.
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~v-----gL~~~a~~~A~~LsyG~qR 156 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFV-----GLGELADRPAGNLSYGQQR 156 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHc-----CCchhhcchhhcCChhHhH
Confidence 99999999995 59999999763200 0 011111111 1111221 2333334566789999999
Q ss_pred HHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHH
Q 000746 772 RVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEE 825 (1303)
Q Consensus 772 RiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~ 825 (1303)
|+-||||+.. +.|++.. .+.|+++|-|+++.+ ..||||+||+.|+++.+|+|+|
T Consensus 157 ~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~e 236 (250)
T COG0411 157 RLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEE 236 (250)
T ss_pred HHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHH
Confidence 9999999531 2344444 358999999999985 5699999999999999999999
Q ss_pred HHhcch
Q 000746 826 LSKHGR 831 (1303)
Q Consensus 826 l~~~~~ 831 (1303)
..+++.
T Consensus 237 V~~dp~ 242 (250)
T COG0411 237 VRNNPR 242 (250)
T ss_pred HhcCHH
Confidence 987653
No 320
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.91 E-value=3e-24 Score=233.94 Aligned_cols=158 Identities=26% Similarity=0.366 Sum_probs=121.1
Q ss_pred EEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----------------EcCeEE
Q 000746 643 IKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----------------IRGTVA 706 (1303)
Q Consensus 643 ~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----------------~~~~ia 706 (1303)
++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .++.++
T Consensus 1 i~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 79 (206)
T TIGR03608 1 LKNISKKFGD-KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLG 79 (206)
T ss_pred CcceEEEECC-EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCee
Confidence 4689999974 46999999999999999999999999999999999999999875321 123699
Q ss_pred EEccCccccc-ccHHHHHccCCC---CC----hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHH
Q 000746 707 YVPQISWIFN-ATLRKNILFGSE---FD----PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA 778 (1303)
Q Consensus 707 yv~Q~p~l~~-~TireNI~~g~~---~~----~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARA 778 (1303)
|++|++.++. .|++||+.++.. .+ ++++.+.++..++.+. ......+||||||||++||||
T Consensus 80 ~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~lS~G~~qr~~lara 148 (206)
T TIGR03608 80 YLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLK-----------LKQKIYELSGGEQQRVALARA 148 (206)
T ss_pred EEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhh-----------hcCChhhCCHHHHHHHHHHHH
Confidence 9999999986 699999987532 11 2233344444444322 233456799999999999999
Q ss_pred HHH-----------------------HHHhHhc-CCCEEEEEecCCCcccccCEEEEE
Q 000746 779 VFN-----------------------SCIKEEL-RGKTRILVTNQLHFLPHVDRIILV 812 (1303)
Q Consensus 779 l~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~~aD~ii~l 812 (1303)
++. +.+++.. +++|+|++||+++....||+|++|
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 149 ILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 642 2333332 479999999999988889999875
No 321
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=9.2e-25 Score=218.63 Aligned_cols=176 Identities=27% Similarity=0.419 Sum_probs=137.4
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc-------------CeEEE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR-------------GTVAY 707 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~-------------~~iay 707 (1303)
|+++|++.+|.+ +.+++|+|++|++|.+++++||||+||||||..+.+++++++|. +.++ +.++.
T Consensus 2 I~i~nv~K~y~~-~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~-i~i~g~~~~~~~s~~LAk~lSI 79 (252)
T COG4604 2 ITIENVSKSYGT-KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGE-ITIDGLELTSTPSKELAKKLSI 79 (252)
T ss_pred eeehhhhHhhCC-EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCce-EEEeeeecccCChHHHHHHHHH
Confidence 678999999975 47999999999999999999999999999999999999999974 4433 35788
Q ss_pred EccCcccc-cccHHHHHccCC-CCChh--------hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHH
Q 000746 708 VPQISWIF-NATLRKNILFGS-EFDPA--------KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMAR 777 (1303)
Q Consensus 708 v~Q~p~l~-~~TireNI~~g~-~~~~~--------~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLAR 777 (1303)
.-|+..+- .-||||=+.||+ ||+.. .++++++--.|. .+.+.+ -..||||||||.-+|-
T Consensus 80 LkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~----~l~dry-------Ld~LSGGQrQRAfIAM 148 (252)
T COG4604 80 LKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLE----DLSDRY-------LDELSGGQRQRAFIAM 148 (252)
T ss_pred HHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhccc----chHHHh-------HHhcccchhhhhhhhe
Confidence 88988876 569999999998 66532 233444333332 222222 2359999999999998
Q ss_pred HHHH-----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 778 AVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 778 Al~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
.+-+ +.+++.. -+||+|+|-|+.++.. ++|+|+.|++|+++.+|+++|+++.
T Consensus 149 VlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~ 226 (252)
T COG4604 149 VLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226 (252)
T ss_pred eeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH
Confidence 7321 1222221 3899999999999975 6999999999999999999999864
No 322
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.91 E-value=1.3e-23 Score=235.08 Aligned_cols=169 Identities=22% Similarity=0.386 Sum_probs=128.7
Q ss_pred EEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc-------------CeEEEE
Q 000746 642 SIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR-------------GTVAYV 708 (1303)
Q Consensus 642 ~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~-------------~~iayv 708 (1303)
+++|+++. .+|+|+||++++|++++|+|+||||||||+++|+|.+++ +|. +.+. ..++|+
T Consensus 2 ~~~~l~~~-----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~-i~~~g~~i~~~~~~~~~~~i~~v 74 (248)
T PRK03695 2 QLNDVAVS-----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGS-IQFAGQPLEAWSAAELARHRAYL 74 (248)
T ss_pred cccccchh-----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeE-EEECCEecCcCCHHHHhhheEEe
Confidence 46677764 279999999999999999999999999999999999864 663 3332 348999
Q ss_pred ccCcc-cccccHHHHHccCCCC--Ch----hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH
Q 000746 709 PQISW-IFNATLRKNILFGSEF--DP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN 781 (1303)
Q Consensus 709 ~Q~p~-l~~~TireNI~~g~~~--~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~ 781 (1303)
+|++. .++.|++||+.++.+. +. ++..++++..++.+ ........||||||||++||||+..
T Consensus 75 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~la~al~~ 143 (248)
T PRK03695 75 SQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDD-----------KLGRSVNQLSGGEWQRVRLAAVVLQ 143 (248)
T ss_pred cccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHh-----------HhcCCcccCCHHHHHHHHHHHHHhc
Confidence 99985 4578999999986432 11 23344444444432 2234557899999999999999984
Q ss_pred ---------H---------------------HHhHhc-CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHHHh
Q 000746 782 ---------S---------------------CIKEEL-RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 782 ---------~---------------------~i~~~~-~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
+ .+.+.. +++|+|++||+++.+ ..||++++|++|++++.|+++++..
T Consensus 144 ~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 144 VWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred cccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 1 122222 478999999999965 5699999999999999999988754
No 323
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.91 E-value=8.9e-24 Score=228.39 Aligned_cols=147 Identities=22% Similarity=0.317 Sum_probs=118.6
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcC--CCCCCCceEE-------------EcCeE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGE--LPPLKDASVV-------------IRGTV 705 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~--~~~~~g~~~~-------------~~~~i 705 (1303)
++++|++++|++ .++++|+||++++||+++|+|+||||||||+++|+|+ ++|++|.+.. .+..+
T Consensus 1 l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (200)
T cd03217 1 LEIKDLHVSVGG-KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGI 79 (200)
T ss_pred CeEEEEEEEeCC-EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcE
Confidence 468999999974 4799999999999999999999999999999999999 4788874321 12349
Q ss_pred EEEccCcccccc-cHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH---
Q 000746 706 AYVPQISWIFNA-TLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN--- 781 (1303)
Q Consensus 706 ayv~Q~p~l~~~-TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~--- 781 (1303)
+|++|+|.++++ |+++|+ + ....+||||||||++||||+..
T Consensus 80 ~~v~q~~~~~~~~~~~~~l------------------------~-----------~~~~~LS~G~~qrv~laral~~~p~ 124 (200)
T cd03217 80 FLAFQYPPEIPGVKNADFL------------------------R-----------YVNEGFSGGEKKRNEILQLLLLEPD 124 (200)
T ss_pred EEeecChhhccCccHHHHH------------------------h-----------hccccCCHHHHHHHHHHHHHhcCCC
Confidence 999999998875 555554 0 0124699999999999999542
Q ss_pred --------------------HHHhHhc-CCCEEEEEecCCCccc--ccCEEEEEeCCEEEEecCH
Q 000746 782 --------------------SCIKEEL-RGKTRILVTNQLHFLP--HVDRIILVSEGMIKEEGSF 823 (1303)
Q Consensus 782 --------------------~~i~~~~-~~~TvilvtH~~~~l~--~aD~ii~l~~G~i~~~g~~ 823 (1303)
+.+.+.. +++|+|++||+++.+. .||++++|++|++.+.|+.
T Consensus 125 illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~~ 189 (200)
T cd03217 125 LAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDK 189 (200)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEccH
Confidence 2343333 4789999999999987 6999999999999999843
No 324
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=9.8e-24 Score=210.74 Aligned_cols=172 Identities=26% Similarity=0.438 Sum_probs=128.6
Q ss_pred EEEEeeEEEeCCCC-CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcC--------eEEEEccC
Q 000746 641 VSIKNGNFSWDSKS-PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG--------TVAYVPQI 711 (1303)
Q Consensus 641 i~~~~~~f~~~~~~-~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~--------~iayv~Q~ 711 (1303)
+.+++++.+|+... ++|+|+|++|.+||++++.|||||||||||+++.|+++|..| .+.+++ .=|.|.|+
T Consensus 4 l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G-~i~l~~r~i~gPgaergvVFQ~ 82 (259)
T COG4525 4 LNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRG-SIQLNGRRIEGPGAERGVVFQN 82 (259)
T ss_pred eehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccc-eEEECCEeccCCCccceeEecc
Confidence 45678899997654 599999999999999999999999999999999999999987 454443 46999999
Q ss_pred ccccc-ccHHHHHccCCC---CChhh----HHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH---
Q 000746 712 SWIFN-ATLRKNILFGSE---FDPAK----YWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF--- 780 (1303)
Q Consensus 712 p~l~~-~TireNI~~g~~---~~~~~----~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~--- 780 (1303)
+-|+. .++.||+.||-. .++.. ..+.+..++|.+ -++ ..-..||||||||+.||||+-
T Consensus 83 ~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~-------~~~----~~i~qLSGGmrQRvGiARALa~eP 151 (259)
T COG4525 83 EALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEG-------AEH----KYIWQLSGGMRQRVGIARALAVEP 151 (259)
T ss_pred CccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCccc-------ccc----cceEeecchHHHHHHHHHHhhcCc
Confidence 88774 699999999964 33322 122222233321 111 223579999999999999941
Q ss_pred -----H-----------HHHhH----h--cCCCEEEEEecCCCc-ccccCEEEEEe--CCEEEEecCHH
Q 000746 781 -----N-----------SCIKE----E--LRGKTRILVTNQLHF-LPHVDRIILVS--EGMIKEEGSFE 824 (1303)
Q Consensus 781 -----~-----------~~i~~----~--~~~~TvilvtH~~~~-l~~aD~ii~l~--~G~i~~~g~~~ 824 (1303)
| +.+.+ . ..|+-+++|||+++. +-.|+++++|+ .|+|++.-+++
T Consensus 152 ~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 152 QLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred ceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCC
Confidence 1 11222 1 158999999999987 55699999996 78999865543
No 325
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=4e-24 Score=225.05 Aligned_cols=161 Identities=28% Similarity=0.451 Sum_probs=133.3
Q ss_pred eeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----------------EcCeEEEEccCcccc-cccHHH
Q 000746 659 NINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----------------IRGTVAYVPQISWIF-NATLRK 721 (1303)
Q Consensus 659 ~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----------------~~~~iayv~Q~p~l~-~~Tire 721 (1303)
++||+.+...++||-|+||||||||+++|.|+..|++|.+.. -+++||||+||.-|| +.|||.
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 688999887899999999999999999999999999974321 135799999999999 679999
Q ss_pred HHccCCCCC-hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHHH--------H---------
Q 000746 722 NILFGSEFD-PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFNS--------C--------- 783 (1303)
Q Consensus 722 NI~~g~~~~-~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~~--------~--------- 783 (1303)
|+.||.... .+.+.+++..-++.+-++..| .+||||+||||||+||++.+ -
T Consensus 96 NL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P-----------~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK 164 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVALLGIEHLLDRYP-----------GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRK 164 (352)
T ss_pred chhhhhcccchHhHHHHHHHhCcHHHHhhCC-----------CccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchh
Confidence 999998654 567788888888888777776 56999999999999996531 1
Q ss_pred ------HhHhc--CCCEEEEEecCCCc-ccccCEEEEEeCCEEEEecCHHHHHhcc
Q 000746 784 ------IKEEL--RGKTRILVTNQLHF-LPHVDRIILVSEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 784 ------i~~~~--~~~TvilvtH~~~~-l~~aD~ii~l~~G~i~~~g~~~~l~~~~ 830 (1303)
+++.. -+--++.|||.++. ++.||+|++|++|++...|..++..++.
T Consensus 165 ~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 165 REILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred hHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence 11111 25679999999987 5679999999999999999999987653
No 326
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.91 E-value=5.8e-24 Score=262.41 Aligned_cols=180 Identities=20% Similarity=0.288 Sum_probs=134.7
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-------------EcCeEE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-------------IRGTVA 706 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-------------~~~~ia 706 (1303)
.++++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+.. .+..++
T Consensus 4 ~i~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 82 (501)
T PRK10762 4 LLQLKGIDKAFPG-VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIG 82 (501)
T ss_pred eEEEeeeEEEeCC-eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 4899999999964 46999999999999999999999999999999999999999875432 023599
Q ss_pred EEccCccccc-ccHHHHHccCCCC-------ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHH
Q 000746 707 YVPQISWIFN-ATLRKNILFGSEF-------DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA 778 (1303)
Q Consensus 707 yv~Q~p~l~~-~TireNI~~g~~~-------~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARA 778 (1303)
|++|++.++. .|++||+.++... +.++.++.+ .+.++.+. ..........+||||||||++||||
T Consensus 83 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~--l~~~~~~~~~~LSgG~~qrv~la~a 155 (501)
T PRK10762 83 IIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEA-----DKLLARLN--LRFSSDKLVGELSIGEQQMVEIAKV 155 (501)
T ss_pred EEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHH-----HHHHHHcC--CCCCccCchhhCCHHHHHHHHHHHH
Confidence 9999998775 5999999986431 221111111 11122221 1111223446799999999999999
Q ss_pred HHH-----------------------HHHhHh-cCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHH
Q 000746 779 VFN-----------------------SCIKEE-LRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELS 827 (1303)
Q Consensus 779 l~~-----------------------~~i~~~-~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~ 827 (1303)
+.. +.+.+. -+++|+|++||+++.+. .||+|++|++|++++.|+.+++.
T Consensus 156 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 156 LSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred HhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 642 223332 24789999999999875 69999999999999999887753
No 327
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.91 E-value=2.3e-23 Score=233.77 Aligned_cols=178 Identities=20% Similarity=0.274 Sum_probs=126.2
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCC--CCCCCceEE-------------EcCeE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGEL--PPLKDASVV-------------IRGTV 705 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~--~~~~g~~~~-------------~~~~i 705 (1303)
++++|+++.|++ .++++|+||+|++|++++|+|+||||||||+++|+|+. +|++|.+.. .+..+
T Consensus 2 i~~~nl~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (248)
T PRK09580 2 LSIKDLHVSVED-KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGI 80 (248)
T ss_pred eEEEEEEEEeCC-eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcce
Confidence 689999999975 46999999999999999999999999999999999995 688874321 01359
Q ss_pred EEEccCcccccc-cHHHHHccC-------CC---CChhhHHHHHHHHhhHHHhh--cCCCCCCccccCCCCCCchHHHHH
Q 000746 706 AYVPQISWIFNA-TLRKNILFG-------SE---FDPAKYWKTVDVSALQHDLD--LLPDRDLTEIGERGVNISGGQKQR 772 (1303)
Q Consensus 706 ayv~Q~p~l~~~-TireNI~~g-------~~---~~~~~~~~vl~~~~l~~~i~--~lp~g~~T~ige~G~~LSGGQkQR 772 (1303)
+|++|++.++.. |..+++.+. .. .+.....+. +++.++ .+|+++.+... ..+||||||||
T Consensus 81 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~--~~~LS~G~~qr 153 (248)
T PRK09580 81 FMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDL-----MEEKIALLKMPEDLLTRSV--NVGFSGGEKKR 153 (248)
T ss_pred EEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHH-----HHHHHHHcCCChhhcccCC--CCCCCHHHHHH
Confidence 999999987653 555554321 10 010011111 111111 23433333211 13699999999
Q ss_pred HHHHHHHHH-----------------------HHHhHhc-CCCEEEEEecCCCcccc--cCEEEEEeCCEEEEecCHHHH
Q 000746 773 VSMARAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLPH--VDRIILVSEGMIKEEGSFEEL 826 (1303)
Q Consensus 773 iaLARAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~~--aD~ii~l~~G~i~~~g~~~~l 826 (1303)
++||||++. +.++... .++|+|++||+++.+.. +|+|++|++|++++.|+++..
T Consensus 154 v~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 154 NDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 233 (248)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence 999999642 2233332 37899999999999876 899999999999999998754
No 328
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.91 E-value=8.2e-24 Score=266.00 Aligned_cols=174 Identities=27% Similarity=0.382 Sum_probs=132.6
Q ss_pred CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCC---CCceEEEc----------CeEEEEccCcccc-cccH
Q 000746 654 SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPL---KDASVVIR----------GTVAYVPQISWIF-NATL 719 (1303)
Q Consensus 654 ~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~---~g~~~~~~----------~~iayv~Q~p~l~-~~Ti 719 (1303)
+++|+|+|+++++||+++|+||||||||||+++|.|+.++. +| .+.++ +.++||+|+++++ +.||
T Consensus 38 ~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G-~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 38 KHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSG-SVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred cccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccee-EEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 47999999999999999999999999999999999998774 34 45443 3589999999998 5699
Q ss_pred HHHHccCCCCCh-hhHHHHHHHHhhHHHhhc--CCCCCCccccCC--CCCCchHHHHHHHHHHHHHH-------------
Q 000746 720 RKNILFGSEFDP-AKYWKTVDVSALQHDLDL--LPDRDLTEIGER--GVNISGGQKQRVSMARAVFN------------- 781 (1303)
Q Consensus 720 reNI~~g~~~~~-~~~~~vl~~~~l~~~i~~--lp~g~~T~ige~--G~~LSGGQkQRiaLARAl~~------------- 781 (1303)
+|||.|+..... ..+.+.-+....++.++. +++..+|.||+. +..||||||||++||||++.
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsg 196 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSG 196 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcc
Confidence 999998653221 000000111122333333 445678999985 47899999999999999642
Q ss_pred ----------HHHhHhc-CCCEEEEEecCCC--cccccCEEEEEeCCEEEEecCHHHHHh
Q 000746 782 ----------SCIKEEL-RGKTRILVTNQLH--FLPHVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 782 ----------~~i~~~~-~~~TvilvtH~~~--~l~~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
+.+++.. +|+|+|+++|+++ ..+.+|++++|++|+++++|+++++.+
T Consensus 197 LD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~ 256 (617)
T TIGR00955 197 LDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256 (617)
T ss_pred hhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHH
Confidence 2233332 5899999999996 367899999999999999999998753
No 329
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.91 E-value=6e-24 Score=234.99 Aligned_cols=158 Identities=25% Similarity=0.395 Sum_probs=120.3
Q ss_pred cceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcC--------eEEEEccCccccc-ccHHHHHccCC
Q 000746 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG--------TVAYVPQISWIFN-ATLRKNILFGS 727 (1303)
Q Consensus 657 L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~--------~iayv~Q~p~l~~-~TireNI~~g~ 727 (1303)
|+|+||+|++||+++|+||||||||||+++|+|+++|++|. +.+.+ ..+|++|++.++. .|++||+.++.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~ 79 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGG-VILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAV 79 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHH
Confidence 57999999999999999999999999999999999999874 43332 2589999999886 69999998742
Q ss_pred -----CCChh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-----------------
Q 000746 728 -----EFDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN----------------- 781 (1303)
Q Consensus 728 -----~~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~----------------- 781 (1303)
..+++ +..+.++.+++.+. .......||||||||++||||+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~ 148 (230)
T TIGR01184 80 DRVLPDLSKSERRAIVEEHIALVGLTEA-----------ADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDAL 148 (230)
T ss_pred HhcccCCCHHHHHHHHHHHHHHcCCHHH-----------HcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHH
Confidence 12222 23333444444322 233456799999999999999642
Q ss_pred ------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHH
Q 000746 782 ------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEEL 826 (1303)
Q Consensus 782 ------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l 826 (1303)
+.+.+.. .++|+|++||+++.+. .||+|++|++|++++.|+..++
T Consensus 149 ~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 149 TRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 2333332 3789999999999864 5999999999999988866544
No 330
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.91 E-value=7e-24 Score=232.43 Aligned_cols=191 Identities=25% Similarity=0.416 Sum_probs=134.8
Q ss_pred EEEEeeEEEeCCCC---CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCC-C---CCCceEEE------------
Q 000746 641 VSIKNGNFSWDSKS---PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP-P---LKDASVVI------------ 701 (1303)
Q Consensus 641 i~~~~~~f~~~~~~---~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~-~---~~g~~~~~------------ 701 (1303)
++++|++..|.... .+++||||++++||.++|||.|||||||+.++|+|+++ + ..+|.+.+
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57899999986543 68999999999999999999999999999999999998 3 12223322
Q ss_pred -----cCeEEEEccCccc-cc--ccHHHHH----ccCCCC-C----hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCC
Q 000746 702 -----RGTVAYVPQISWI-FN--ATLRKNI----LFGSEF-D----PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVN 764 (1303)
Q Consensus 702 -----~~~iayv~Q~p~l-~~--~TireNI----~~g~~~-~----~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~ 764 (1303)
.+.|+|++|+|-- +| -||.+-| ...... + .++..+.++..++.+. +..+..-...
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~--------~~~~~~YPhe 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDP--------ERRLKSYPHE 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCH--------HHHHhhCCcc
Confidence 2369999999852 23 2444443 322222 1 1233334444444321 1123445678
Q ss_pred CchHHHHHHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCcc-cccCEEEEEeCCEEE
Q 000746 765 ISGGQKQRVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFL-PHVDRIILVSEGMIK 818 (1303)
Q Consensus 765 LSGGQkQRiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~ 818 (1303)
||||||||+.||-|+.. +.+++.. .+.|+|+|||++..+ ..||+|.||.+|+|+
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 99999999999999531 1222222 589999999999986 569999999999999
Q ss_pred EecCHHHHHhcc--hHHHHHHHH
Q 000746 819 EEGSFEELSKHG--RLFQKLMEN 839 (1303)
Q Consensus 819 ~~g~~~~l~~~~--~~~~~l~~~ 839 (1303)
|.|+.+++.++. .+-+.|+..
T Consensus 234 E~g~~~~i~~~P~HPYT~~Ll~s 256 (316)
T COG0444 234 EEGPVEEIFKNPKHPYTRGLLNS 256 (316)
T ss_pred EeCCHHHHhcCCCChHHHHHHHh
Confidence 999999998764 445555544
No 331
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.90 E-value=1.2e-23 Score=232.78 Aligned_cols=165 Identities=25% Similarity=0.393 Sum_probs=124.6
Q ss_pred ccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC----CCCceEEE-----------cCeEEEEccCcc-ccc--c
Q 000746 656 TLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP----LKDASVVI-----------RGTVAYVPQISW-IFN--A 717 (1303)
Q Consensus 656 ~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~----~~g~~~~~-----------~~~iayv~Q~p~-l~~--~ 717 (1303)
+++|+||++++|++++|+||||||||||+++|+|+++| ++|.+ .+ +..++|++|+|. .|+ .
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i-~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 79 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEI-LLDGRPLLPLSIRGRHIATIMQNPRTAFNPLF 79 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEE-EECCEechhhhhhhheeEEEecCchhhcCccc
Confidence 57899999999999999999999999999999999998 77643 32 247999999995 343 5
Q ss_pred cHHHHHccCCC----CC---hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH---------
Q 000746 718 TLRKNILFGSE----FD---PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN--------- 781 (1303)
Q Consensus 718 TireNI~~g~~----~~---~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~--------- 781 (1303)
|+.||+.+... .. ++++.+.++.+++. ++ .+.......+||||||||++||||+..
T Consensus 80 t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~-~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDE 151 (230)
T TIGR02770 80 TMGNHAIETLRSLGKLSKQARALILEALEAVGLP-------DP-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADE 151 (230)
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCC-------ch-HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99999865321 11 12233344443332 11 133455667899999999999999542
Q ss_pred --------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 782 --------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 782 --------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
+.+.+.. .++|+|++||+++.+. .||++++|++|++.+.|+++++...
T Consensus 152 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 216 (230)
T TIGR02770 152 PTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN 216 (230)
T ss_pred CccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 2344433 3789999999999885 6999999999999999999998653
No 332
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.90 E-value=2.5e-23 Score=227.55 Aligned_cols=163 Identities=19% Similarity=0.296 Sum_probs=123.9
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc----------CeEEEE
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR----------GTVAYV 708 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~----------~~iayv 708 (1303)
+.++++|++++|++ .++++|+||++++||+++|+|+||||||||+++|.|+++|++|. +.++ +.++|+
T Consensus 10 ~~l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~-i~~~g~~i~~~~~~~~i~~~ 87 (214)
T PRK13543 10 PLLAAHALAFSRNE-EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQ-IQIDGKTATRGDRSRFMAYL 87 (214)
T ss_pred ceEEEeeEEEecCC-ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCee-EEECCEEccchhhhhceEEe
Confidence 46899999999975 46999999999999999999999999999999999999999874 3333 249999
Q ss_pred ccCcccccc-cHHHHHccCCCC----ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH--
Q 000746 709 PQISWIFNA-TLRKNILFGSEF----DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN-- 781 (1303)
Q Consensus 709 ~Q~p~l~~~-TireNI~~g~~~----~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~-- 781 (1303)
+|++.++.. |++||+.++... .+++..+.++..++ ++. ......+||||||||++||||++.
T Consensus 88 ~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l-------~~~----~~~~~~~LS~G~~qrv~laral~~~p 156 (214)
T PRK13543 88 GHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGL-------AGY----EDTLVRQLSAGQKKRLALARLWLSPA 156 (214)
T ss_pred ecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCC-------hhh----ccCChhhCCHHHHHHHHHHHHHhcCC
Confidence 999988875 999999765322 12222333333222 222 223446799999999999999542
Q ss_pred ---------------------HHHhHh-cCCCEEEEEecCCCccc-ccCEEEEEeC
Q 000746 782 ---------------------SCIKEE-LRGKTRILVTNQLHFLP-HVDRIILVSE 814 (1303)
Q Consensus 782 ---------------------~~i~~~-~~~~TvilvtH~~~~l~-~aD~ii~l~~ 814 (1303)
+.+.+. .+++|+|++||+++.+. .+|++++++.
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 157 PLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 233332 24799999999999874 6899999864
No 333
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.90 E-value=1.1e-23 Score=229.47 Aligned_cols=166 Identities=17% Similarity=0.199 Sum_probs=124.9
Q ss_pred ccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcCeEEEEccCcccccc-cHHHHHccCCC---CCh
Q 000746 656 TLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWIFNA-TLRKNILFGSE---FDP 731 (1303)
Q Consensus 656 ~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~~iayv~Q~p~l~~~-TireNI~~g~~---~~~ 731 (1303)
+|+|+||+|++|++++|+||||||||||+++|+|+++|.+|.+..+++....+.|++.++.. |++||+.+... .+.
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~ 81 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDG 81 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCH
Confidence 68999999999999999999999999999999999999998654355554456677888864 99999986432 333
Q ss_pred hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-----------------------HHHhHhc
Q 000746 732 AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN-----------------------SCIKEEL 788 (1303)
Q Consensus 732 ~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~-----------------------~~i~~~~ 788 (1303)
++..+.+ .+...+++..++.+ ..||||||||++||||++. +.+.+..
T Consensus 82 ~~~~~~~------~~~~~l~~~~~~~~----~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~ 151 (213)
T PRK15177 82 DEFSHFC------YQLTQLEQCYTDRV----SEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQL 151 (213)
T ss_pred HHHHHHH------HHHhChhHHhhchH----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHh
Confidence 3332221 11222333334433 4599999999999999542 2233344
Q ss_pred CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHhcch
Q 000746 789 RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKHGR 831 (1303)
Q Consensus 789 ~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~~~~ 831 (1303)
+++|+|++||+++.+. .||++++|++|++++.|+.++..+..+
T Consensus 152 ~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 195 (213)
T PRK15177 152 QQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATALFE 195 (213)
T ss_pred hCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHHHHH
Confidence 6789999999999875 699999999999999999988764433
No 334
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.90 E-value=1.8e-23 Score=226.30 Aligned_cols=159 Identities=26% Similarity=0.376 Sum_probs=120.8
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-----------EcCeEEEEc
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-----------IRGTVAYVP 709 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-----------~~~~iayv~ 709 (1303)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+.+|++|.+.. .+++++|++
T Consensus 2 l~~~~l~~~~~~-~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~ 80 (200)
T PRK13540 2 LDVIELDFDYHD-QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVG 80 (200)
T ss_pred EEEEEEEEEeCC-eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEec
Confidence 688999999975 46999999999999999999999999999999999999999874321 124699999
Q ss_pred cCcccc-cccHHHHHccCCCC--ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-----
Q 000746 710 QISWIF-NATLRKNILFGSEF--DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN----- 781 (1303)
Q Consensus 710 Q~p~l~-~~TireNI~~g~~~--~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~----- 781 (1303)
|++.++ ..|++||+.++... ++.+..+.++..++. +. ......+||||||||++||||+..
T Consensus 81 q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~----~~~~~~~LS~G~~~rv~laral~~~p~~l 149 (200)
T PRK13540 81 HRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLE-------HL----IDYPCGLLSSGQKRQVALLRLWMSKAKLW 149 (200)
T ss_pred cccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCc-------hh----hhCChhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 999886 67999999986321 222333333333222 11 122335799999999999999542
Q ss_pred ------------------HHHhHh-cCCCEEEEEecCCCcccccCEEEE
Q 000746 782 ------------------SCIKEE-LRGKTRILVTNQLHFLPHVDRIIL 811 (1303)
Q Consensus 782 ------------------~~i~~~-~~~~TvilvtH~~~~l~~aD~ii~ 811 (1303)
+.+++. .+++|+|++||+.+.+..||.-++
T Consensus 150 ilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 150 LLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred EEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 234433 247899999999999999997654
No 335
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.90 E-value=2.3e-23 Score=258.51 Aligned_cols=184 Identities=22% Similarity=0.351 Sum_probs=136.2
Q ss_pred CcEEEEeeEEEeCC----CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-------------
Q 000746 639 PAVSIKNGNFSWDS----KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI------------- 701 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~----~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~------------- 701 (1303)
+.++++|++++|++ +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+..-
T Consensus 278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~ 357 (520)
T TIGR03269 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGP 357 (520)
T ss_pred ceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccch
Confidence 46999999999953 2369999999999999999999999999999999999999988754321
Q ss_pred ------cCeEEEEccCccccc-ccHHHHHccCCC--CChh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchH
Q 000746 702 ------RGTVAYVPQISWIFN-ATLRKNILFGSE--FDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGG 768 (1303)
Q Consensus 702 ------~~~iayv~Q~p~l~~-~TireNI~~g~~--~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGG 768 (1303)
+.+|+|++|++.++. .|++||+.++.. .+.+ +..+.++.+++.+. ..+.........||||
T Consensus 358 ~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~~~~~~LSgG 431 (520)
T TIGR03269 358 DGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEE------KAEEILDKYPDELSEG 431 (520)
T ss_pred hhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCc------cchhhhhCChhhCCHH
Confidence 134999999998775 599999985321 1111 22223333322110 0001123455779999
Q ss_pred HHHHHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecC
Q 000746 769 QKQRVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGS 822 (1303)
Q Consensus 769 QkQRiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~ 822 (1303)
||||++||||+.. +.+++.. .++|+|+|||+++.+. .||++++|++|++++.|+
T Consensus 432 q~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~ 511 (520)
T TIGR03269 432 ERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGD 511 (520)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999642 2333332 3789999999999875 599999999999999999
Q ss_pred HHHHHh
Q 000746 823 FEELSK 828 (1303)
Q Consensus 823 ~~~l~~ 828 (1303)
++++.+
T Consensus 512 ~~~~~~ 517 (520)
T TIGR03269 512 PEEIVE 517 (520)
T ss_pred HHHHHh
Confidence 887643
No 336
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.90 E-value=2.8e-23 Score=224.81 Aligned_cols=160 Identities=21% Similarity=0.286 Sum_probs=125.3
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-----------EcCeEEEEc
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-----------IRGTVAYVP 709 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-----------~~~~iayv~ 709 (1303)
++++|+++.|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|.+|.+.. .++.++|++
T Consensus 1 l~i~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (201)
T cd03231 1 LEADELTCERDG-RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLG 79 (201)
T ss_pred CEEEEEEEEeCC-ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEec
Confidence 468999999975 46999999999999999999999999999999999999999875421 234699999
Q ss_pred cCcccc-cccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH------
Q 000746 710 QISWIF-NATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN------ 781 (1303)
Q Consensus 710 Q~p~l~-~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~------ 781 (1303)
|++.++ +.|++||+.+..+ .++++..++++..++.+..+ ....+||||||||++||||+..
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~laral~~~p~lll 148 (201)
T cd03231 80 HAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFED-----------RPVAQLSAGQQRRVALARLLLSGRPLWI 148 (201)
T ss_pred cccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhc-----------CchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999876 6899999987643 34556667777666653321 2346799999999999999542
Q ss_pred -----------------HHHhHhc-CCCEEEEEecCCCc-ccccCEEEEE
Q 000746 782 -----------------SCIKEEL-RGKTRILVTNQLHF-LPHVDRIILV 812 (1303)
Q Consensus 782 -----------------~~i~~~~-~~~TvilvtH~~~~-l~~aD~ii~l 812 (1303)
+.+.+.. +++|+|++||+... ...+|+++++
T Consensus 149 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 149 LDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 2333332 47999999998775 4567888776
No 337
>PLN03211 ABC transporter G-25; Provisional
Probab=99.90 E-value=1.7e-23 Score=262.45 Aligned_cols=171 Identities=22% Similarity=0.330 Sum_probs=130.7
Q ss_pred CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCC--CCceEEE---------cCeEEEEccCccccc-ccHHH
Q 000746 654 SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPL--KDASVVI---------RGTVAYVPQISWIFN-ATLRK 721 (1303)
Q Consensus 654 ~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~--~g~~~~~---------~~~iayv~Q~p~l~~-~Tire 721 (1303)
+++|+|+|+++++||+++|+||||||||||+++|+|..+|. +| .+.+ +++++||+|++.++. .|++|
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG-~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 159 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTG-TILANNRKPTKQILKRTGFVTQDDILYPHLTVRE 159 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeE-EEEECCEECchhhccceEEECcccccCCcCCHHH
Confidence 36999999999999999999999999999999999999874 55 3433 245999999999984 69999
Q ss_pred HHccCC------CCChhhHHHHHHHHhhHHHhhcCCCCCCccccCC-CCCCchHHHHHHHHHHHHHH-------------
Q 000746 722 NILFGS------EFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGER-GVNISGGQKQRVSMARAVFN------------- 781 (1303)
Q Consensus 722 NI~~g~------~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~-G~~LSGGQkQRiaLARAl~~------------- 781 (1303)
|+.++. ..++++..+.++ .+-+.+ .+++..+|.+|++ ...||||||||++||||++.
T Consensus 160 ~l~~~a~~~~~~~~~~~~~~~~v~--~~l~~l-gL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsg 236 (659)
T PLN03211 160 TLVFCSLLRLPKSLTKQEKILVAE--SVISEL-GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 236 (659)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHH--HHHHHc-CChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCC
Confidence 998753 122222211111 111111 2445568888865 56899999999999999653
Q ss_pred ----------HHHhHhc-CCCEEEEEecCCCc--ccccCEEEEEeCCEEEEecCHHHHHh
Q 000746 782 ----------SCIKEEL-RGKTRILVTNQLHF--LPHVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 782 ----------~~i~~~~-~~~TvilvtH~~~~--l~~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
+.+++.. +|+|+|++||+++. ...+|+|++|++|++++.|+++++.+
T Consensus 237 LD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 237 LDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred cCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 2333332 58999999999984 56799999999999999999998864
No 338
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.90 E-value=1.3e-23 Score=233.31 Aligned_cols=160 Identities=24% Similarity=0.372 Sum_probs=116.3
Q ss_pred CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-----------EcCeEEEEc-cCcccc-cccHHH
Q 000746 655 PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-----------IRGTVAYVP-QISWIF-NATLRK 721 (1303)
Q Consensus 655 ~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-----------~~~~iayv~-Q~p~l~-~~Tire 721 (1303)
++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+.. .+..++|++ |++.++ +.|++|
T Consensus 35 ~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e 114 (236)
T cd03267 35 EALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVID 114 (236)
T ss_pred eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHH
Confidence 6999999999999999999999999999999999999999874321 134699997 566665 679999
Q ss_pred HHccCCC---CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-----------------
Q 000746 722 NILFGSE---FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN----------------- 781 (1303)
Q Consensus 722 NI~~g~~---~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~----------------- 781 (1303)
|+.+... .++++..+.++ .+.+.+ .+++..++ ...+||||||||++||||+..
T Consensus 115 ~l~~~~~~~~~~~~~~~~~~~--~~l~~~-gl~~~~~~----~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~ 187 (236)
T cd03267 115 SFYLLAAIYDLPPARFKKRLD--ELSELL-DLEELLDT----PVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVV 187 (236)
T ss_pred HHHHHHHHcCCCHHHHHHHHH--HHHHHc-CChhHhcC----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHH
Confidence 9976432 23322222111 111111 12222233 345799999999999999542
Q ss_pred ------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEec
Q 000746 782 ------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEG 821 (1303)
Q Consensus 782 ------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g 821 (1303)
+.+.+.. +++|+|++||+++.+. .||++++|++|++++.|
T Consensus 188 ~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 188 AQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 2344432 3789999999999875 59999999999998764
No 339
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.3e-23 Score=256.63 Aligned_cols=177 Identities=19% Similarity=0.279 Sum_probs=132.7
Q ss_pred EEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-------------EcCeEEEEc
Q 000746 643 IKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-------------IRGTVAYVP 709 (1303)
Q Consensus 643 ~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-------------~~~~iayv~ 709 (1303)
++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .+..++|++
T Consensus 1 ~~nl~~~~~~-~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 79 (491)
T PRK10982 1 MSNISKSFPG-VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVH 79 (491)
T ss_pred CCceEEEeCC-EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence 3688999964 46999999999999999999999999999999999999999875421 024599999
Q ss_pred cCcccc-cccHHHHHccCCC-C-----ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-
Q 000746 710 QISWIF-NATLRKNILFGSE-F-----DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN- 781 (1303)
Q Consensus 710 Q~p~l~-~~TireNI~~g~~-~-----~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~- 781 (1303)
|++.++ +.|++||+.++.. . ++++..+. ..+.++.+ |.+........+||||||||++||||+..
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~~~ 152 (491)
T PRK10982 80 QELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRD-----TKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFSYN 152 (491)
T ss_pred cccccccCCCHHHHhhcccccccccccCHHHHHHH-----HHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHHhC
Confidence 999876 5699999987631 1 22211111 11222222 22222344567899999999999999642
Q ss_pred ----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHH
Q 000746 782 ----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELS 827 (1303)
Q Consensus 782 ----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~ 827 (1303)
+.+.+.. +++|+|++||+++.+. .||+|++|++|++++.|+.+++.
T Consensus 153 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 153 AKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 2233322 5789999999999875 59999999999999999988763
No 340
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.90 E-value=2e-23 Score=224.21 Aligned_cols=172 Identities=23% Similarity=0.330 Sum_probs=128.4
Q ss_pred cEEEEeeEEEeCCCC--------CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcCe-EEEEcc
Q 000746 640 AVSIKNGNFSWDSKS--------PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGT-VAYVPQ 710 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~--------~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~~-iayv~Q 710 (1303)
.++++|++..|+... .+++||||+|++||.++|||+|||||||+.++|+|+++|++|. +...++ +.-..
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~-i~f~g~~i~~~~- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGE-ILFEGKDITKLS- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCce-EEEcCcchhhcc-
Confidence 478899999886431 5799999999999999999999999999999999999999974 444432 11111
Q ss_pred CcccccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH---------
Q 000746 711 ISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN--------- 781 (1303)
Q Consensus 711 ~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~--------- 781 (1303)
.+-..+++.+.++.+++.++.. ......|||||||||+||||+.-
T Consensus 82 ----------------~~~~~~~v~elL~~Vgl~~~~~----------~ryPhelSGGQrQRi~IARALal~P~liV~DE 135 (268)
T COG4608 82 ----------------KEERRERVLELLEKVGLPEEFL----------YRYPHELSGGQRQRIGIARALALNPKLIVADE 135 (268)
T ss_pred ----------------hhHHHHHHHHHHHHhCCCHHHh----------hcCCcccCchhhhhHHHHHHHhhCCcEEEecC
Confidence 1112356777777777765431 12346799999999999999531
Q ss_pred ----------HHHhHh------cCCCEEEEEecCCCcccc-cCEEEEEeCCEEEEecCHHHHHhcc--hHHHHHHHH
Q 000746 782 ----------SCIKEE------LRGKTRILVTNQLHFLPH-VDRIILVSEGMIKEEGSFEELSKHG--RLFQKLMEN 839 (1303)
Q Consensus 782 ----------~~i~~~------~~~~TvilvtH~~~~l~~-aD~ii~l~~G~i~~~g~~~~l~~~~--~~~~~l~~~ 839 (1303)
..+.+. ..+-|.++|||+++.+++ +|+|.+|..|+|+|.|+.+++..+. .+-+.++..
T Consensus 136 pvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~HpYTk~Ll~a 212 (268)
T COG4608 136 PVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLHPYTKALLSA 212 (268)
T ss_pred chhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCCHHHHHHHHh
Confidence 111111 148899999999999876 8999999999999999999998753 344445443
No 341
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.90 E-value=1.9e-23 Score=259.49 Aligned_cols=178 Identities=19% Similarity=0.312 Sum_probs=134.1
Q ss_pred CcEEEEeeEEEeCC----------CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-------
Q 000746 639 PAVSIKNGNFSWDS----------KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI------- 701 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~----------~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~------- 701 (1303)
+.++++|+++.|+. +.++|+|+||+|++|++++|+||||||||||+++|+|+++ .+|. +.+
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~-i~~~g~~i~~ 351 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGE-IWFDGQPLHN 351 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcE-EEECCEEccc
Confidence 45899999999952 2469999999999999999999999999999999999985 6764 332
Q ss_pred ---------cCeEEEEccCc--ccc-cccHHHHHccCCC-----CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccC
Q 000746 702 ---------RGTVAYVPQIS--WIF-NATLRKNILFGSE-----FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGE 760 (1303)
Q Consensus 702 ---------~~~iayv~Q~p--~l~-~~TireNI~~g~~-----~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige 760 (1303)
+..++|++|++ .++ +.|++||+.++.. .+. ++..+.++..++.+ .....
T Consensus 352 ~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~ 421 (529)
T PRK15134 352 LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDP----------ETRHR 421 (529)
T ss_pred cchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCH----------HHHhc
Confidence 23599999998 355 4699999987521 121 12223333333321 11234
Q ss_pred CCCCCchHHHHHHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeC
Q 000746 761 RGVNISGGQKQRVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSE 814 (1303)
Q Consensus 761 ~G~~LSGGQkQRiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~ 814 (1303)
...+||||||||++||||+.. +.+++.. .++|+|+|||+++.+. .||+|++|++
T Consensus 422 ~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~ 501 (529)
T PRK15134 422 YPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQ 501 (529)
T ss_pred CCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEEC
Confidence 456899999999999999542 2344332 3789999999999875 5999999999
Q ss_pred CEEEEecCHHHHHh
Q 000746 815 GMIKEEGSFEELSK 828 (1303)
Q Consensus 815 G~i~~~g~~~~l~~ 828 (1303)
|++++.|+++++.+
T Consensus 502 G~i~~~~~~~~~~~ 515 (529)
T PRK15134 502 GEVVEQGDCERVFA 515 (529)
T ss_pred CEEEEEcCHHHHhc
Confidence 99999999998864
No 342
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.90 E-value=2.3e-23 Score=221.35 Aligned_cols=153 Identities=29% Similarity=0.522 Sum_probs=111.3
Q ss_pred EEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcCe-EEEEccCcccccccHH
Q 000746 642 SIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGT-VAYVPQISWIFNATLR 720 (1303)
Q Consensus 642 ~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~~-iayv~Q~p~l~~~Tir 720 (1303)
+++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|.|+++|++|. +.+++. +. + .-...++
T Consensus 1 ~~~~l~~~~~~-~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~-v~~~g~~~~---~---~~~~~~~ 72 (180)
T cd03214 1 EVENLSVGYGG-RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGE-ILLDGKDLA---S---LSPKELA 72 (180)
T ss_pred CeeEEEEEECC-eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEECC---c---CCHHHHH
Confidence 46899999975 46999999999999999999999999999999999999998874 444432 10 0 0000112
Q ss_pred HHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-------------------
Q 000746 721 KNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN------------------- 781 (1303)
Q Consensus 721 eNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~------------------- 781 (1303)
..|.+- .++++.+++.+.+. ....+||||||||++||||+..
T Consensus 73 ~~i~~~--------~q~l~~~gl~~~~~-----------~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~ 133 (180)
T cd03214 73 RKIAYV--------PQALELLGLAHLAD-----------RPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQ 133 (180)
T ss_pred HHHhHH--------HHHHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 222111 11555566654332 3457899999999999999542
Q ss_pred ----HHHhHhcC--CCEEEEEecCCCcc-cccCEEEEEeCCEEEEec
Q 000746 782 ----SCIKEELR--GKTRILVTNQLHFL-PHVDRIILVSEGMIKEEG 821 (1303)
Q Consensus 782 ----~~i~~~~~--~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g 821 (1303)
+.+.+..+ ++|+|++||+++.+ ..||++++|++|++++.|
T Consensus 134 ~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 134 IELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 23444333 78999999999997 569999999999998654
No 343
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.90 E-value=2.2e-23 Score=229.43 Aligned_cols=168 Identities=25% Similarity=0.343 Sum_probs=122.2
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcCeEEEEcc-Ccccc-ccc
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQ-ISWIF-NAT 718 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~~iayv~Q-~p~l~-~~T 718 (1303)
+.++|.+..|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++| .+.+.+.-.+..+ ...++ +.|
T Consensus 23 l~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G-~i~~~g~~~~~~~~~~~~~~~~t 100 (224)
T cd03220 23 LGILGRKGEVGE-FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSG-TVTVRGRVSSLLGLGGGFNPELT 100 (224)
T ss_pred hhhhhhhhhcCC-eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEchhhcccccCCCCCc
Confidence 567788888865 4699999999999999999999999999999999999999887 5666665433333 33333 679
Q ss_pred HHHHHccCCC---CChhh----HHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH----------
Q 000746 719 LRKNILFGSE---FDPAK----YWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN---------- 781 (1303)
Q Consensus 719 ireNI~~g~~---~~~~~----~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~---------- 781 (1303)
++||+.++.. .+.+. ..++++..++ ++..+ ....+||||||||++||||++.
T Consensus 101 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~----~~~~~LSgG~~qrv~laral~~~p~llllDEP 169 (224)
T cd03220 101 GRENIYLNGRLLGLSRKEIDEKIDEIIEFSEL-------GDFID----LPVKTYSSGMKARLAFAIATALEPDILLIDEV 169 (224)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------hhhhh----CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 9999987532 12222 2222222222 22222 3345799999999999999542
Q ss_pred -------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEec
Q 000746 782 -------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEG 821 (1303)
Q Consensus 782 -------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g 821 (1303)
+.+.+.. +++|+|++||+++.+. .+|++++|++|++++.|
T Consensus 170 ~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 170 LAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred cccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 2333332 4689999999999875 59999999999998765
No 344
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.90 E-value=1.3e-23 Score=202.72 Aligned_cols=176 Identities=27% Similarity=0.409 Sum_probs=134.6
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------------E
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------------I 701 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------------~ 701 (1303)
.|+++|++|.|+.. .+|.||+|+.+.||.+++.||||+|||||++.|-=+-.|.+|.... +
T Consensus 2 sirv~~in~~yg~~-q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~l 80 (242)
T COG4161 2 SIQLNGINCFYGAH-QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDL 80 (242)
T ss_pred ceEEcccccccccc-hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHH
Confidence 48899999999754 6899999999999999999999999999999987666677764321 4
Q ss_pred cCeEEEEccCcccc-cccHHHHHccCC----CCChh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHH
Q 000746 702 RGTVAYVPQISWIF-NATLRKNILFGS----EFDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQR 772 (1303)
Q Consensus 702 ~~~iayv~Q~p~l~-~~TireNI~~g~----~~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQR 772 (1303)
|..+|.|.|+-.|. ..||-||+.=.- ...++ +-.+.++.-.|.+.-+.+| ..|||||+||
T Consensus 81 r~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~p-----------lhlsggqqqr 149 (242)
T COG4161 81 RRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYP-----------LHLSGGQQQR 149 (242)
T ss_pred HHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCc-----------eecccchhhh
Confidence 56799999999887 679999997321 12222 2233344444444444443 5699999999
Q ss_pred HHHHHHHHH-----------------------HHHhHhc-CCCEEEEEecCCCcccc-cCEEEEEeCCEEEEecCHHHHH
Q 000746 773 VSMARAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLPH-VDRIILVSEGMIKEEGSFEELS 827 (1303)
Q Consensus 773 iaLARAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~~-aD~ii~l~~G~i~~~g~~~~l~ 827 (1303)
+|||||++. +.|++.. .|.|-++|||.++..+. |.+++.|++|+|+|+|+++-..
T Consensus 150 vaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~ft 229 (242)
T COG4161 150 VAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT 229 (242)
T ss_pred HHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhcc
Confidence 999999642 2334433 48899999999999764 8999999999999999987654
No 345
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.89 E-value=7.1e-23 Score=222.74 Aligned_cols=160 Identities=20% Similarity=0.247 Sum_probs=125.2
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE----------cCeEEEEcc
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI----------RGTVAYVPQ 710 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~----------~~~iayv~Q 710 (1303)
++++|+++.|++ ..+++|+||+|++||+++|+|+||||||||+++|+|+++|++|.+ .+ +..++|++|
T Consensus 3 l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~~~~~~~~ 80 (207)
T PRK13539 3 LEGEDLACVRGG-RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTI-KLDGGDIDDPDVAEACHYLGH 80 (207)
T ss_pred EEEEeEEEEECC-eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEeCcchhhHhhcEEecC
Confidence 789999999975 469999999999999999999999999999999999999998743 32 335899998
Q ss_pred Ccccc-cccHHHHHccCCC---CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-----
Q 000746 711 ISWIF-NATLRKNILFGSE---FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN----- 781 (1303)
Q Consensus 711 ~p~l~-~~TireNI~~g~~---~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~----- 781 (1303)
++.++ +.|++||+.+... .++++..+.++..++.+..+ ....+||||||||++||||+..
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la~al~~~p~ll 149 (207)
T PRK13539 81 RNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAH-----------LPFGYLSAGQKRRVALARLLVSNRPIW 149 (207)
T ss_pred CCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHc-----------CChhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 87765 6899999986432 23444566666666654321 1234799999999999999542
Q ss_pred ------------------HHHhHh-cCCCEEEEEecCCCcccccCEEEEEeC
Q 000746 782 ------------------SCIKEE-LRGKTRILVTNQLHFLPHVDRIILVSE 814 (1303)
Q Consensus 782 ------------------~~i~~~-~~~~TvilvtH~~~~l~~aD~ii~l~~ 814 (1303)
+.+.+. .+++|+|++||+++.++. |+++.++.
T Consensus 150 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 150 ILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 233332 258999999999999988 99988854
No 346
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.89 E-value=5e-23 Score=228.84 Aligned_cols=168 Identities=22% Similarity=0.343 Sum_probs=125.7
Q ss_pred EEeCCCCCccceeeeEec-----CCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcC-eEEEEccCccc-ccccHH
Q 000746 648 FSWDSKSPTLSNINLDIP-----VGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG-TVAYVPQISWI-FNATLR 720 (1303)
Q Consensus 648 f~~~~~~~~L~~i~l~i~-----~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~-~iayv~Q~p~l-~~~Tir 720 (1303)
|+|++....++|++|+++ +||+++|+||||||||||+++|+|+++|.+|. +.+.+ .|+|++|++.. ++.|++
T Consensus 1 ~~y~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~-i~~~g~~i~~~~q~~~~~~~~tv~ 79 (246)
T cd03237 1 YTYPTMKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGD-IEIELDTVSYKPQYIKADYEGTVR 79 (246)
T ss_pred CCCcccccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCe-EEECCceEEEecccccCCCCCCHH
Confidence 567765568888888886 79999999999999999999999999999974 55665 89999999874 689999
Q ss_pred HHHccCCC-C-C-hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH----------------
Q 000746 721 KNILFGSE-F-D-PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN---------------- 781 (1303)
Q Consensus 721 eNI~~g~~-~-~-~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~---------------- 781 (1303)
||+.+... . + +++..++++.+++.+. ......+||||||||++||||+..
T Consensus 80 e~l~~~~~~~~~~~~~~~~~l~~l~l~~~-----------~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~ 148 (246)
T cd03237 80 DLLSSITKDFYTHPYFKTEIAKPLQIEQI-----------LDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDV 148 (246)
T ss_pred HHHHHHhhhccccHHHHHHHHHHcCCHHH-----------hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 99975432 1 1 2233445554444322 234456799999999999999642
Q ss_pred -------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEE--EecCHHHHH
Q 000746 782 -------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIK--EEGSFEELS 827 (1303)
Q Consensus 782 -------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~--~~g~~~~l~ 827 (1303)
+.+++.. .++|+|+|||+++.+. .||+|++|+++..+ ..+++.++.
T Consensus 149 ~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 149 EQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 2344433 3799999999999877 59999999765433 456666654
No 347
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.89 E-value=3.2e-23 Score=228.75 Aligned_cols=162 Identities=22% Similarity=0.323 Sum_probs=119.3
Q ss_pred EEEEeeEEEeCC------CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-------------
Q 000746 641 VSIKNGNFSWDS------KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI------------- 701 (1303)
Q Consensus 641 i~~~~~~f~~~~------~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~------------- 701 (1303)
++++|++++|+. +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+..-
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 688999999963 1368999999999999999999999999999999999999988743221
Q ss_pred -------cCeEEEEccCccccc-ccHHHHHccCC---CCChh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCc
Q 000746 702 -------RGTVAYVPQISWIFN-ATLRKNILFGS---EFDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNIS 766 (1303)
Q Consensus 702 -------~~~iayv~Q~p~l~~-~TireNI~~g~---~~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LS 766 (1303)
+..++|++|+|.++. .|++|||.+.. ..+.+ +..++++..++. +.. ....+.+||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~---~~~~~~~LS 151 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIP-------ERL---WHLPPATFS 151 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-------hhh---hhCCcccCC
Confidence 135899999998874 59999997631 12222 222222222221 111 123467899
Q ss_pred hHHHHHHHHHHHHHH-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEE
Q 000746 767 GGQKQRVSMARAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILV 812 (1303)
Q Consensus 767 GGQkQRiaLARAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l 812 (1303)
||||||++||||++. +.+++.. +++|+|++||+++.+. .||+++.+
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999642 2333332 4789999999999875 69999876
No 348
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=8e-23 Score=254.04 Aligned_cols=177 Identities=25% Similarity=0.354 Sum_probs=137.2
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc--CeEEEEccCcc--c
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR--GTVAYVPQISW--I 714 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~--~~iayv~Q~p~--l 714 (1303)
..++++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++| .+.+. ..++|++|++. +
T Consensus 318 ~~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G-~i~~~~~~~i~~~~q~~~~~~ 395 (530)
T PRK15064 318 NALEVENLTKGFDN-GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSG-TVKWSENANIGYYAQDHAYDF 395 (530)
T ss_pred ceEEEEeeEEeeCC-ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEECCceEEEEEcccccccC
Confidence 46999999999975 4699999999999999999999999999999999999999987 45454 47999999974 4
Q ss_pred c-cccHHHHHccCC--CCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH----------
Q 000746 715 F-NATLRKNILFGS--EFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN---------- 781 (1303)
Q Consensus 715 ~-~~TireNI~~g~--~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~---------- 781 (1303)
+ +.|++||+.+.. ..++++..+.++..++..+ .......+||||||||++||||+..
T Consensus 396 ~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEP 465 (530)
T PRK15064 396 ENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQD----------DIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEP 465 (530)
T ss_pred CCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChh----------HhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 4 469999997532 1233444555555544211 1234457899999999999999642
Q ss_pred -------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEE-EecCHHHHHhc
Q 000746 782 -------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIK-EEGSFEELSKH 829 (1303)
Q Consensus 782 -------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~-~~g~~~~l~~~ 829 (1303)
+.+++. +.|+|+|||+++.+. .||++++|++|+++ ..|+++++.+.
T Consensus 466 t~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 466 TNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred CCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 223332 469999999999875 59999999999998 78988877543
No 349
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.89 E-value=7.6e-23 Score=225.00 Aligned_cols=182 Identities=21% Similarity=0.330 Sum_probs=138.9
Q ss_pred CCcEEEEeeEEEeCCCC----------CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-------
Q 000746 638 LPAVSIKNGNFSWDSKS----------PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------- 700 (1303)
Q Consensus 638 ~~~i~~~~~~f~~~~~~----------~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------- 700 (1303)
...++.+|+...|+-+. .+.+++||++++||.++|||.||||||||-.+|++++++. |.+..
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~ 352 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDG 352 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccc
Confidence 45688999998886432 4789999999999999999999999999999999999875 54321
Q ss_pred --------EcCeEEEEccCccc---ccccHHHHHccCCC-----C-C---hhhHHHHHHHHhhHHHhhcCCCCCCccccC
Q 000746 701 --------IRGTVAYVPQISWI---FNATLRKNILFGSE-----F-D---PAKYWKTVDVSALQHDLDLLPDRDLTEIGE 760 (1303)
Q Consensus 701 --------~~~~iayv~Q~p~l---~~~TireNI~~g~~-----~-~---~~~~~~vl~~~~l~~~i~~lp~g~~T~ige 760 (1303)
+|+++-.|+|||+= ...||-+-|.=|-. . + +++..++++.++|+.... ..
T Consensus 353 ~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r----------~R 422 (534)
T COG4172 353 LSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATR----------NR 422 (534)
T ss_pred cChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHh----------hc
Confidence 45679999999972 25688888865521 1 2 334555666666665431 22
Q ss_pred CCCCCchHHHHHHHHHHHHH---------------HH--------HHhHh--cCCCEEEEEecCCCcccc-cCEEEEEeC
Q 000746 761 RGVNISGGQKQRVSMARAVF---------------NS--------CIKEE--LRGKTRILVTNQLHFLPH-VDRIILVSE 814 (1303)
Q Consensus 761 ~G~~LSGGQkQRiaLARAl~---------------~~--------~i~~~--~~~~TvilvtH~~~~l~~-aD~ii~l~~ 814 (1303)
-...+|||||||||||||++ |. .+++. ..+-+-++|||++..++. ||+|+||.+
T Consensus 423 YPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~ 502 (534)
T COG4172 423 YPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRD 502 (534)
T ss_pred CCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeC
Confidence 34679999999999999953 11 11221 147799999999999875 999999999
Q ss_pred CEEEEecCHHHHHhcc
Q 000746 815 GMIKEEGSFEELSKHG 830 (1303)
Q Consensus 815 G~i~~~g~~~~l~~~~ 830 (1303)
|+|+|+|+.+++.+++
T Consensus 503 GkiVE~G~~~~if~~P 518 (534)
T COG4172 503 GKIVEQGPTEAVFANP 518 (534)
T ss_pred CEEeeeCCHHHHhcCC
Confidence 9999999999998764
No 350
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.89 E-value=6.4e-23 Score=222.70 Aligned_cols=160 Identities=24% Similarity=0.277 Sum_probs=124.5
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-----------EcCeEEEEc
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-----------IRGTVAYVP 709 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-----------~~~~iayv~ 709 (1303)
++++|++++|+. .++++|+||+|++||+++|+|+||||||||+++|+|+++|++|.+.. .+++++|++
T Consensus 2 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~ 80 (204)
T PRK13538 2 LEARNLACERDE-RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLG 80 (204)
T ss_pred eEEEEEEEEECC-EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeC
Confidence 688999999975 46999999999999999999999999999999999999999874321 134699999
Q ss_pred cCccccc-ccHHHHHccCCC----CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH---
Q 000746 710 QISWIFN-ATLRKNILFGSE----FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN--- 781 (1303)
Q Consensus 710 Q~p~l~~-~TireNI~~g~~----~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~--- 781 (1303)
|++.++. .|++||+.++.+ .+++++.++++..++.+..+ ....+||||||||++||||++.
T Consensus 81 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrl~la~al~~~p~ 149 (204)
T PRK13538 81 HQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFED-----------VPVRQLSAGQQRRVALARLWLTRAP 149 (204)
T ss_pred CccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhh-----------CChhhcCHHHHHHHHHHHHHhcCCC
Confidence 9998875 699999987643 23445666676666654322 2346799999999999999642
Q ss_pred --------------------HHHhHh-cCCCEEEEEecCCCcccc-cCEEEEE
Q 000746 782 --------------------SCIKEE-LRGKTRILVTNQLHFLPH-VDRIILV 812 (1303)
Q Consensus 782 --------------------~~i~~~-~~~~TvilvtH~~~~l~~-aD~ii~l 812 (1303)
+.+.+. .+++|+|++||+++.+.. .++++++
T Consensus 150 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 150 LWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 233333 247899999999999865 4566665
No 351
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.89 E-value=4e-19 Score=201.12 Aligned_cols=417 Identities=18% Similarity=0.249 Sum_probs=244.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccccCCChHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 000746 392 WRVGFRLRSTLVAAIFRKTLRLTHEARKGFPSGKV---TNMITTDANALQQISQQLHGLWSAP-FRITLSMVLLYQQLGV 467 (1303)
Q Consensus 392 ~~~~~~lr~~L~~~i~~k~l~l~~~~~~~~~~g~i---~nl~s~Dv~~i~~~~~~~~~~~~~~-~~i~~~~~~l~~~lg~ 467 (1303)
...+..+|..|....|++-+.-..-..-....|.+ =|.++.|+..+.+....+..=..-| +.++++.+.|-...+-
T Consensus 182 ~klaLafrtrL~~h~y~~Y~snqTyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP~lDl~l~s~~L~~s~~s 261 (728)
T KOG0064|consen 182 SKLALAFRTRLTRHAYDMYLSNQTFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLDLILISFTLLDSATS 261 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhcc
Confidence 36777889999999999877643211111111222 2568889887776544433222333 3444444433332221
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHH--
Q 000746 468 ASLLGSLMLVLMVPLQTFI----ISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSW-- 541 (1303)
Q Consensus 468 ~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~-- 541 (1303)
....+..+..+.+.+...+ ..+..++..+...........=+.++.+-..|-.||..+...+++++.-+.-...
T Consensus 262 ~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~qm~ 341 (728)
T KOG0064|consen 262 VGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLVEQMN 341 (728)
T ss_pred ccccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHHHHHH
Confidence 1111111111111122222 2333344333333333334455678999999999999988888777665543322
Q ss_pred --HHHHHHHHHHHHHH----HHHHhHHh---HHhhhhhhhhhCCCC-------CHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 000746 542 --FRKAQFLSAFNSFI----LNSIPVVV---TVVSFGTFTLLGGDL-------TPARAFTS-LSLFAVLRFPLNMLPNLL 604 (1303)
Q Consensus 542 --~~~~~~~~~~~~~~----~~~~~~~~---~~~~f~~~~~~~~~l-------~~~~~f~~-l~l~~~l~~pl~~l~~~~ 604 (1303)
.++..++...-.++ |.....+. +++ ++... .++++ +-...|++ =-+.......+..+...+
T Consensus 342 li~k~r~~YiMleqF~mKYvWsg~GlvmvsiPI~-~~t~~-s~~~~~~~e~~~srt~~f~t~r~LL~saAdAieRlMssy 419 (728)
T KOG0064|consen 342 LIFKVRLWYIMLEQFVMKYTWSGTGLVMVSIPIL-TSTLA-SEGTLQLSEEGNSRTKEFITNRRLLLSAADAIERLMSSY 419 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCceEEEEeeee-ecccC-CCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222222 21111110 111 11110 01111 11122322 223333334555666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcC--------CC-------------CCCC-----CCCCcEEEEeeEEEeCCCCCccc
Q 000746 605 SQVVNANVSLQRLEELLLAEERILM--------PN-------------PPLE-----PELPAVSIKNGNFSWDSKSPTLS 658 (1303)
Q Consensus 605 ~~~~~a~~s~~Ri~~~l~~~~~~~~--------~~-------------~~~~-----~~~~~i~~~~~~f~~~~~~~~L~ 658 (1303)
..+.+-..--.|+.+.++.-++... +. .+.+ .....|.++|+-.--|....+..
T Consensus 420 KeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~~gI~lenIpvItP~~~vvv~ 499 (728)
T KOG0064|consen 420 KEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGIILENIPVITPAGDVLVP 499 (728)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCCcCCccchhhcccceEEecCceeccCcceeec
Confidence 7777777777788766543221100 00 0000 01234888888887777667889
Q ss_pred eeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-EcCeEEEEccCcccccccHHHHHccCC--------CC
Q 000746 659 NINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-IRGTVAYVPQISWIFNATLRKNILFGS--------EF 729 (1303)
Q Consensus 659 ~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-~~~~iayv~Q~p~l~~~TireNI~~g~--------~~ 729 (1303)
++||+|++|....|+||||||||+|.+.|.|+.|...|.-.. .+.+|-|+||.|+.--||+||-|.+.. .+
T Consensus 500 ~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~ 579 (728)
T KOG0064|consen 500 KLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGY 579 (728)
T ss_pred ceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCcccceeecCCcHHHHHhcCC
Confidence 999999999999999999999999999999999887763222 245799999999999999999999763 36
Q ss_pred ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHH--------HHHHHH-----------hHhc--
Q 000746 730 DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA--------VFNSCI-----------KEEL-- 788 (1303)
Q Consensus 730 ~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARA--------l~~~~i-----------~~~~-- 788 (1303)
.|.+..+.++...|+.-++. ..|.+. +.+--.-||||+|||+++||. ++|+|- .+..
T Consensus 580 ~d~dL~~iL~~v~L~~i~qr-~~g~da-~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~ 657 (728)
T KOG0064|consen 580 TDQDLEAILDIVHLEHILQR-EGGWDA-VRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD 657 (728)
T ss_pred CHHHHHHHHHHhhHHHHHHh-ccChhh-hccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh
Confidence 77888999999999866554 344433 444455799999999999998 455552 1222
Q ss_pred CCCEEEEEecCCCcccccCEEEEE
Q 000746 789 RGKTRILVTNQLHFLPHVDRIILV 812 (1303)
Q Consensus 789 ~~~TvilvtH~~~~l~~aD~ii~l 812 (1303)
.|-+.+-||||++.-++-.+.+..
T Consensus 658 ~gi~llsithrpslwk~h~~ll~~ 681 (728)
T KOG0064|consen 658 AGISLLSITHRPSLWKYHTHLLEF 681 (728)
T ss_pred cCceEEEeecCccHHHHHHHHHhc
Confidence 378999999999988776666655
No 352
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.89 E-value=8.7e-23 Score=219.97 Aligned_cols=156 Identities=17% Similarity=0.281 Sum_probs=120.9
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcC---------eEEEEccC
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG---------TVAYVPQI 711 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~---------~iayv~Q~ 711 (1303)
++++|++++|++ +.++ ++||+|++||+++|+|+||||||||+++|+|+.+|++|. +.+++ .++|++|+
T Consensus 2 l~~~~l~~~~~~-~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~i~~~~~~~~~~~~~~ 78 (195)
T PRK13541 2 LSLHQLQFNIEQ-KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGN-IYYKNCNINNIAKPYCTYIGHN 78 (195)
T ss_pred eEEEEeeEEECC-cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcE-EEECCcccChhhhhhEEeccCC
Confidence 679999999964 3444 599999999999999999999999999999999999975 44332 48999998
Q ss_pred ccc-ccccHHHHHccCCCC--ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-------
Q 000746 712 SWI-FNATLRKNILFGSEF--DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN------- 781 (1303)
Q Consensus 712 p~l-~~~TireNI~~g~~~--~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~------- 781 (1303)
+.+ ++.|++|||.++... ++++..++++.+++.+. ....+.+||||||||++||||++.
T Consensus 79 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~~rl~la~al~~~p~~lll 147 (195)
T PRK13541 79 LGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDL-----------LDEKCYSLSSGMQKIVAIARLIACQSDLWLL 147 (195)
T ss_pred cCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhh-----------hccChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 765 678999999875432 23445555555555432 234567899999999999999542
Q ss_pred ----------------HHHhH-hcCCCEEEEEecCCCcccccCEEE
Q 000746 782 ----------------SCIKE-ELRGKTRILVTNQLHFLPHVDRII 810 (1303)
Q Consensus 782 ----------------~~i~~-~~~~~TvilvtH~~~~l~~aD~ii 810 (1303)
+.++. ..+++|+|++||+++.++.||.+.
T Consensus 148 DEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 148 DEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhheec
Confidence 23332 235799999999999999998763
No 353
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.89 E-value=1.9e-23 Score=205.52 Aligned_cols=180 Identities=23% Similarity=0.399 Sum_probs=138.7
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------------
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------------ 700 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------------ 700 (1303)
+.++++|+..+|... .+|++|||+.++|+.+.|+|.|||||||+|++|-=+-.|..|.+..
T Consensus 5 ~~l~v~dlHK~~G~~-eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a 83 (256)
T COG4598 5 NALEVEDLHKRYGEH-EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83 (256)
T ss_pred cceehhHHHhhcccc-hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence 468889999999754 5999999999999999999999999999999999888888874321
Q ss_pred -------EcCeEEEEccCcccc-cccHHHHHcc------CCCCCh--hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCC
Q 000746 701 -------IRGTVAYVPQISWIF-NATLRKNILF------GSEFDP--AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVN 764 (1303)
Q Consensus 701 -------~~~~iayv~Q~p~l~-~~TireNI~~------g~~~~~--~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~ 764 (1303)
+|.+.+.|+|+-.|. ..|+.||+.= |.+-++ ++-...+...++.+.-+ .-...
T Consensus 84 d~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~-----------~YP~~ 152 (256)
T COG4598 84 DKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKAD-----------AYPAH 152 (256)
T ss_pred CHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhh-----------cCccc
Confidence 234689999998887 5799999973 222111 22333344444443322 23467
Q ss_pred CchHHHHHHHHHHHH--------HH------------H---HHhHhc-CCCEEEEEecCCCcccc-cCEEEEEeCCEEEE
Q 000746 765 ISGGQKQRVSMARAV--------FN------------S---CIKEEL-RGKTRILVTNQLHFLPH-VDRIILVSEGMIKE 819 (1303)
Q Consensus 765 LSGGQkQRiaLARAl--------~~------------~---~i~~~~-~~~TvilvtH~~~~l~~-aD~ii~l~~G~i~~ 819 (1303)
|||||+||+|||||+ || + .+.+.. .|+|.++|||.+.+.+. +.+++.+.+|.|-|
T Consensus 153 LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE 232 (256)
T COG4598 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEE 232 (256)
T ss_pred cCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecc
Confidence 999999999999994 22 1 223322 69999999999999876 78999999999999
Q ss_pred ecCHHHHHhcc
Q 000746 820 EGSFEELSKHG 830 (1303)
Q Consensus 820 ~g~~~~l~~~~ 830 (1303)
+|+|+++..++
T Consensus 233 ~G~P~qvf~nP 243 (256)
T COG4598 233 EGPPEQVFGNP 243 (256)
T ss_pred cCChHHHhcCC
Confidence 99999998654
No 354
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.89 E-value=8.3e-23 Score=213.00 Aligned_cols=123 Identities=24% Similarity=0.438 Sum_probs=100.7
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcCe--------------EE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGT--------------VA 706 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~~--------------ia 706 (1303)
++++|++++|++ .++++|+||++++||+++|+||||||||||+++|+|+++|.+|. +.+.+. ++
T Consensus 1 l~~~~l~~~~~~-~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~-v~~~g~~~~~~~~~~~~~~~i~ 78 (163)
T cd03216 1 LELRGITKRFGG-VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGE-ILVDGKEVSFASPRDARRAGIA 78 (163)
T ss_pred CEEEEEEEEECC-eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeE-EEECCEECCcCCHHHHHhcCeE
Confidence 468999999975 47999999999999999999999999999999999999998874 444331 22
Q ss_pred EEccCcccccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-----
Q 000746 707 YVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN----- 781 (1303)
Q Consensus 707 yv~Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~----- 781 (1303)
|++| ||||||||++||||++.
T Consensus 79 ~~~q------------------------------------------------------LS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 79 MVYQ------------------------------------------------------LSVGERQMVEIARALARNARLL 104 (163)
T ss_pred EEEe------------------------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 2222 99999999999999642
Q ss_pred ------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEE
Q 000746 782 ------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKE 819 (1303)
Q Consensus 782 ------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~ 819 (1303)
+.+++.. +++|+|++||+++.+. .||++++|++|++++
T Consensus 105 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 105 ILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 2343332 4789999999999765 599999999999875
No 355
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=8.4e-23 Score=252.43 Aligned_cols=180 Identities=22% Similarity=0.328 Sum_probs=132.9
Q ss_pred CcEEEEeeEEEeCC--CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCC-CCCCceEEEc-------------
Q 000746 639 PAVSIKNGNFSWDS--KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP-PLKDASVVIR------------- 702 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~--~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~-~~~g~~~~~~------------- 702 (1303)
..++++|+++.|+. +.++++|+||+|++||+++|+||||||||||+++|+|+++ |++|.+ .+.
T Consensus 258 ~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i-~~~g~~~~~~~~~~~~ 336 (506)
T PRK13549 258 VILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEI-FIDGKPVKIRNPQQAI 336 (506)
T ss_pred ceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEE-EECCEECCCCCHHHHH
Confidence 35899999999952 3469999999999999999999999999999999999998 477743 322
Q ss_pred -CeEEEEccCc---ccc-cccHHHHHccCC--CC------ChhhHHHHHHHHhhHHHhhcCCCCCCc-cccCCCCCCchH
Q 000746 703 -GTVAYVPQIS---WIF-NATLRKNILFGS--EF------DPAKYWKTVDVSALQHDLDLLPDRDLT-EIGERGVNISGG 768 (1303)
Q Consensus 703 -~~iayv~Q~p---~l~-~~TireNI~~g~--~~------~~~~~~~vl~~~~l~~~i~~lp~g~~T-~ige~G~~LSGG 768 (1303)
..++|++|+| .++ +.|+.||+.++. .+ +.++.. ....+.++.+. ... .......+||||
T Consensus 337 ~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~--l~~~~~~~~~~~LSgG 409 (506)
T PRK13549 337 AQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAEL-----KTILESIQRLK--VKTASPELAIARLSGG 409 (506)
T ss_pred HCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHH-----HHHHHHHHhcC--ccCCCcccccccCCHH
Confidence 3499999996 355 569999998752 11 111110 11222233331 111 123445689999
Q ss_pred HHHHHHHHHHHHH-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCH
Q 000746 769 QKQRVSMARAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSF 823 (1303)
Q Consensus 769 QkQRiaLARAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~ 823 (1303)
||||++||||+.. +.+.+.. +++|+|++||+++.+. .||++++|++|+++..|+.
T Consensus 410 ~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~ 489 (506)
T PRK13549 410 NQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLIN 489 (506)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEecc
Confidence 9999999999542 2333322 5899999999999865 5999999999999999988
Q ss_pred HHH
Q 000746 824 EEL 826 (1303)
Q Consensus 824 ~~l 826 (1303)
+++
T Consensus 490 ~~~ 492 (506)
T PRK13549 490 HNL 492 (506)
T ss_pred ccC
Confidence 775
No 356
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.89 E-value=1.1e-22 Score=219.71 Aligned_cols=157 Identities=18% Similarity=0.243 Sum_probs=118.3
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-----------EcCeEEEEc
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-----------IRGTVAYVP 709 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-----------~~~~iayv~ 709 (1303)
++++|+++.|++ .++++|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..++|++
T Consensus 1 l~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (198)
T TIGR01189 1 LAARNLACSRGE-RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLG 79 (198)
T ss_pred CEEEEEEEEECC-EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEec
Confidence 468999999975 46999999999999999999999999999999999999999874321 124689999
Q ss_pred cCccccc-ccHHHHHccCCCC---ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH----
Q 000746 710 QISWIFN-ATLRKNILFGSEF---DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN---- 781 (1303)
Q Consensus 710 Q~p~l~~-~TireNI~~g~~~---~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~---- 781 (1303)
|++.++. .|++||+.+..+. ++++..++++..++.+.. .....+||||||||++||||++.
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al~~~p~l 148 (198)
T TIGR01189 80 HLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFE-----------DLPAAQLSAGQQRRLALARLWLSRAPL 148 (198)
T ss_pred cCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHh-----------cCChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 9998875 7999999865322 123455556655555432 12345799999999999999542
Q ss_pred -------------------HHHhHh-cCCCEEEEEecCCCcccccCEEE
Q 000746 782 -------------------SCIKEE-LRGKTRILVTNQLHFLPHVDRII 810 (1303)
Q Consensus 782 -------------------~~i~~~-~~~~TvilvtH~~~~l~~aD~ii 810 (1303)
+.+.+. .+++|+|++||+...+.. |+++
T Consensus 149 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~-~~~~ 196 (198)
T TIGR01189 149 WILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLVE-AREL 196 (198)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccccc-eEEe
Confidence 334443 257899999999854433 4444
No 357
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.89 E-value=1.1e-22 Score=223.96 Aligned_cols=155 Identities=28% Similarity=0.450 Sum_probs=117.3
Q ss_pred eEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc--------CeEEEEccCccc---ccccHHHHHccCCC--
Q 000746 662 LDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR--------GTVAYVPQISWI---FNATLRKNILFGSE-- 728 (1303)
Q Consensus 662 l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~--------~~iayv~Q~p~l---~~~TireNI~~g~~-- 728 (1303)
|++++||+++|+|+||||||||+++|.|.++|.+|. +.+. ..++|++|+|.+ ++.|++||+.++..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~ 79 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGT-VKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGH 79 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccc
Confidence 578999999999999999999999999999999874 4443 359999999876 45799999987521
Q ss_pred ---C--C----hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH------------------
Q 000746 729 ---F--D----PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN------------------ 781 (1303)
Q Consensus 729 ---~--~----~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~------------------ 781 (1303)
+ + +++..++++..++.+. ......+||||||||++||||++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~ 148 (223)
T TIGR03771 80 IGWLRRPCVADFAAVRDALRRVGLTEL-----------ADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPT 148 (223)
T ss_pred cccccCCcHHHHHHHHHHHHHhCCchh-----------hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 1 1 1223344444444321 223445699999999999999542
Q ss_pred -----HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 782 -----SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 782 -----~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
+.+.+.. +++|+|++||+++.+. .||+++++ +|++++.|+++++.++
T Consensus 149 ~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~ 202 (223)
T TIGR03771 149 QELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDP 202 (223)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcCh
Confidence 2344333 4789999999999765 59999999 8999999999988653
No 358
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.89 E-value=1.1e-22 Score=256.93 Aligned_cols=177 Identities=27% Similarity=0.382 Sum_probs=138.7
Q ss_pred cEEEEeeEEEeCCC---CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----E-----------
Q 000746 640 AVSIKNGNFSWDSK---SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----I----------- 701 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~---~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----~----------- 701 (1303)
.++++|++++|++. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|.... +
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 58999999999642 36999999999999999999999999999999999999999874321 0
Q ss_pred -cCeEEEEccCccccc-ccHHHHHccCCC---CC-h---hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHH
Q 000746 702 -RGTVAYVPQISWIFN-ATLRKNILFGSE---FD-P---AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQR 772 (1303)
Q Consensus 702 -~~~iayv~Q~p~l~~-~TireNI~~g~~---~~-~---~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQR 772 (1303)
++.++|++|++.+|. .|+.||+.++.. .+ + ++..+.++.+++ +..+.....+||||||||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl-----------~~~~~~~~~~LS~Gq~qr 152 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGL-----------EDRVEYQPSQLSGGQQQR 152 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC-----------hhhhcCCcccCCHHHHHH
Confidence 246999999999985 599999986431 11 1 122233333333 333444556899999999
Q ss_pred HHHHHHHHH-----------------------HHHhHhc-CCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHH
Q 000746 773 VSMARAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELS 827 (1303)
Q Consensus 773 iaLARAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~ 827 (1303)
++||||+.. +.+++.. +++|+|++||+++.+..||++++|++|+++++|+.+|..
T Consensus 153 v~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 153 VSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 999999642 2333333 489999999999998899999999999999999998774
No 359
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.88 E-value=1.8e-22 Score=270.89 Aligned_cols=180 Identities=17% Similarity=0.278 Sum_probs=141.4
Q ss_pred CcEEEEeeEEEeCCC-CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-----------EcCeEE
Q 000746 639 PAVSIKNGNFSWDSK-SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-----------IRGTVA 706 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~-~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-----------~~~~ia 706 (1303)
..++++|+++.|+++ .++++|+||+|++||+++|+||||||||||+++|+|+.+|++|.+.. .++.||
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IG 2015 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMG 2015 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEE
Confidence 468999999999753 47999999999999999999999999999999999999999975421 134699
Q ss_pred EEccCccccc-ccHHHHHccCC---CCChh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHH
Q 000746 707 YVPQISWIFN-ATLRKNILFGS---EFDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA 778 (1303)
Q Consensus 707 yv~Q~p~l~~-~TireNI~~g~---~~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARA 778 (1303)
||||++.++. .|++||+.+.. ..+++ ...+.++.++|.+.. ......||||||||+++|||
T Consensus 2016 y~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~-----------dk~~~~LSGGqKqRLslA~A 2084 (2272)
T TIGR01257 2016 YCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYA-----------DRLAGTYSGGNKRKLSTAIA 2084 (2272)
T ss_pred EEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHh-----------cCChhhCCHHHHHHHHHHHH
Confidence 9999998884 69999998632 12222 223344555544322 23346799999999999999
Q ss_pred HHH-----------------------HHHhHh-cCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 779 VFN-----------------------SCIKEE-LRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 779 l~~-----------------------~~i~~~-~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
++. +.+.+. .+|+|+|++||+++.+. .||||++|++|+++..|+++++.++
T Consensus 2085 Li~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2085 LIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 642 234443 25899999999999875 5999999999999999999998654
No 360
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.88 E-value=1.9e-22 Score=216.53 Aligned_cols=139 Identities=24% Similarity=0.387 Sum_probs=103.6
Q ss_pred CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE--------------EcCeEEEEccCc--cccc
Q 000746 653 KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV--------------IRGTVAYVPQIS--WIFN 716 (1303)
Q Consensus 653 ~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~--------------~~~~iayv~Q~p--~l~~ 716 (1303)
+.++|+|+||+|++||+++|+||||||||||+++|+|.++|++|.+.. .+..++|++|+| .+++
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 83 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFA 83 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcccc
Confidence 446999999999999999999999999999999999999999875321 123599999998 4778
Q ss_pred ccHHHHHccCC---CCChh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH--------
Q 000746 717 ATLRKNILFGS---EFDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN-------- 781 (1303)
Q Consensus 717 ~TireNI~~g~---~~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~-------- 781 (1303)
.|++||+.++. ..+++ +..++++..++.+.. .....+||||||||++||||++.
T Consensus 84 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~laral~~~p~llllD 152 (190)
T TIGR01166 84 ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLR-----------ERPTHCLSGGEKKRVAIAGAVAMRPDVLLLD 152 (190)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhh-----------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 89999998753 12322 233344444443222 23446799999999999999642
Q ss_pred ---------------HHHhHhc-CCCEEEEEecCCCc
Q 000746 782 ---------------SCIKEEL-RGKTRILVTNQLHF 802 (1303)
Q Consensus 782 ---------------~~i~~~~-~~~TvilvtH~~~~ 802 (1303)
+.+.+.. +++|+|++||+++.
T Consensus 153 EPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 153 EPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 2333332 47899999999864
No 361
>PLN03073 ABC transporter F family; Provisional
Probab=99.88 E-value=6.3e-22 Score=249.50 Aligned_cols=176 Identities=26% Similarity=0.395 Sum_probs=133.2
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc--CeEEEEccCccccc
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR--GTVAYVPQISWIFN 716 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~--~~iayv~Q~p~l~~ 716 (1303)
+.++++|+++.|+++.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|. +.+. .+|+|++|++. ..
T Consensus 507 ~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~-I~~~~~~~igyv~Q~~~-~~ 584 (718)
T PLN03073 507 PIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGT-VFRSAKVRMAVFSQHHV-DG 584 (718)
T ss_pred ceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCce-EEECCceeEEEEecccc-cc
Confidence 46899999999965556999999999999999999999999999999999999999875 4433 36999999873 33
Q ss_pred ccHHHHHcc--C---CCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHHH---------
Q 000746 717 ATLRKNILF--G---SEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFNS--------- 782 (1303)
Q Consensus 717 ~TireNI~~--g---~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~~--------- 782 (1303)
.++.+|+.. . ...+++++.++++..++.++.. ......||||||||++||||++.+
T Consensus 585 l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~----------~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEP 654 (718)
T PLN03073 585 LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFKKPHILLLDEP 654 (718)
T ss_pred CCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHh----------cCCccccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 456666432 1 1234556666676666643221 234567999999999999996421
Q ss_pred ----------HHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEE-EecCHHHH
Q 000746 783 ----------CIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIK-EEGSFEEL 826 (1303)
Q Consensus 783 ----------~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~-~~g~~~~l 826 (1303)
.+.+.+ .+.|+|+|||+++++. .||++++|++|+++ ..|++++.
T Consensus 655 T~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 655 SNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 121211 1359999999999976 59999999999998 67887765
No 362
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.88 E-value=8.5e-20 Score=207.51 Aligned_cols=313 Identities=17% Similarity=0.166 Sum_probs=200.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCcchhHHHhhccHHHHHHHHHH-HHHHHHHHHHHHH
Q 000746 969 FGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFFHTNPIGRVINRFSRDLGDIDRNVAS-FVNMFMNQLWQLL 1047 (1303)
Q Consensus 969 ~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~-~~~~~~~~~~~~i 1047 (1303)
+...++..++...+.+++.+.-..++...|....++|..--...+....+ +|++++..++.. ....++..-.. -
T Consensus 74 ~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~L----rDL~qvR~Fltg~g~~A~fDaPW~-P 148 (580)
T COG4618 74 AFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL----RDLDQVRQFLTGTGLTAFFDAPWM-P 148 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhhcCCCccccch----hhHHHHHHHHcCCCcchhcCCchH-H
Confidence 44556778899999999999999999999999988877643333233332 688999888775 33333332222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHH-
Q 000746 1048 STFVLIGIVSTISLWAIMPLLILFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKS- 1126 (1303)
Q Consensus 1048 ~~~v~i~~~~~~~~~~~~pl~~~~~~i~~~~~~~~r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~- 1126 (1303)
.-+.+++.+.|++.+..+...++.+.+..+-.+..++--+...+..+.-+.+..-+..+..+|+|.|...+..++..+.
T Consensus 149 ~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~ 228 (580)
T COG4618 149 LYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFN 228 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHH
Confidence 2333455566666655554444433333333333333334444444556778888999999999999876666555444
Q ss_pred ---HHhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1127 ---MDNNIRFTLANTSS---NRWLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQ 1200 (1303)
Q Consensus 1127 ---~d~~~~~~~~~~~~---~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~ 1200 (1303)
++.+.+........ .+.+-..+ ...+...++.+++.+. . ++|.+...--.+.....|+...+..
T Consensus 229 ~~~L~~~~~asd~~~~~~~~Sr~~Rm~l---Qs~iLg~GA~Lvi~ge--~-----t~G~mIA~SIl~gRaLaPid~aI~~ 298 (580)
T COG4618 229 AAYLSAQERASDRNGAFGALSRALRMAL---QSAVLGLGAWLVIKGE--I-----TPGMMIAGSILSGRALAPIDLAIAN 298 (580)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHhcceeeEEcCc--C-----CcchhhHHHHHhhhhhccHHHHHHH
Confidence 33333333332221 11111111 2222223333333222 1 2232222222233455677888888
Q ss_pred HHHHhhhhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCC
Q 000746 1201 ASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTG 1280 (1303)
Q Consensus 1201 ~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTG 1280 (1303)
|.++-.+..|-.|+.+.++..++..+. -..| ..+|.+..|++++.=++...|+|+||||+++|||-+|||||||
T Consensus 299 Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~---m~LP---~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSg 372 (580)
T COG4618 299 WKQFVAARQSYKRLNELLAELPAAAER---MPLP---APQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSG 372 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccccCC---CCCC---CCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCC
Confidence 999999999999999999865443221 1111 2369999999999766666699999999999999999999999
Q ss_pred CCHHHHHHHHhhcccCCCCeee
Q 000746 1281 AGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1281 SGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
||||||.++|.+.+.|++|.|.
T Consensus 373 SGKSTLaR~lvG~w~p~~G~VR 394 (580)
T COG4618 373 SGKSTLARLLVGIWPPTSGSVR 394 (580)
T ss_pred ccHHHHHHHHHcccccCCCcEE
Confidence 9999999999999999999974
No 363
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.88 E-value=4.8e-22 Score=268.14 Aligned_cols=178 Identities=17% Similarity=0.309 Sum_probs=139.3
Q ss_pred cEEEEeeEEEeCC---CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCC---CCCCceEEE---------cCe
Q 000746 640 AVSIKNGNFSWDS---KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELP---PLKDASVVI---------RGT 704 (1303)
Q Consensus 640 ~i~~~~~~f~~~~---~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~---~~~g~~~~~---------~~~ 704 (1303)
.++++|+++.|+. ++++|+|+|+++++||+++|+||||||||||+++|+|..+ +++|. +.+ ++.
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~-I~i~G~~~~~~~~~~ 837 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGD-RLVNGRPLDSSFQRS 837 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeE-EEECCEECChhhhcc
Confidence 4789999999952 3469999999999999999999999999999999999987 56664 333 356
Q ss_pred EEEEccCcc-cccccHHHHHccCC------CCChhh----HHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHH
Q 000746 705 VAYVPQISW-IFNATLRKNILFGS------EFDPAK----YWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRV 773 (1303)
Q Consensus 705 iayv~Q~p~-l~~~TireNI~~g~------~~~~~~----~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRi 773 (1303)
++||+|++. +++.|||||+.|+. ..++++ .+++++..+| .+..++.+|+.|.+||||||||+
T Consensus 838 i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L-------~~~~d~~v~~~~~~LSgGqrqRl 910 (1394)
T TIGR00956 838 IGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEM-------ESYADAVVGVPGEGLNVEQRKRL 910 (1394)
T ss_pred eeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCC-------hhhCCCeeCCCCCCCCHHHhhHH
Confidence 999999875 45789999999752 122222 2334444333 34467889998889999999999
Q ss_pred HHHHHHHHH------------------------HHhHh-cCCCEEEEEecCCCc--ccccCEEEEEeCC-EEEEecCHHH
Q 000746 774 SMARAVFNS------------------------CIKEE-LRGKTRILVTNQLHF--LPHVDRIILVSEG-MIKEEGSFEE 825 (1303)
Q Consensus 774 aLARAl~~~------------------------~i~~~-~~~~TvilvtH~~~~--l~~aD~ii~l~~G-~i~~~g~~~~ 825 (1303)
+||||++.+ .+++. .+|+|+|+++|+++. ...+|++++|++| ++++.|+..+
T Consensus 911 ~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 911 TIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGE 990 (1394)
T ss_pred HHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCccc
Confidence 999996532 23332 258999999999996 3679999999987 9999999754
No 364
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.88 E-value=4.9e-22 Score=246.06 Aligned_cols=180 Identities=17% Similarity=0.304 Sum_probs=128.1
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----E---------cCeE
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----I---------RGTV 705 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----~---------~~~i 705 (1303)
+.++++|+++.|. .+|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+.. + +..|
T Consensus 264 ~~l~~~~l~~~~~---~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i 340 (510)
T PRK09700 264 TVFEVRNVTSRDR---KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGM 340 (510)
T ss_pred cEEEEeCccccCC---CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCc
Confidence 3699999998763 3899999999999999999999999999999999999998875432 1 1358
Q ss_pred EEEccCc---ccc-cccHHHHHccCCCCChh-------hHHHHHHHHhhHHHhhcCCCCCC-ccccCCCCCCchHHHHHH
Q 000746 706 AYVPQIS---WIF-NATLRKNILFGSEFDPA-------KYWKTVDVSALQHDLDLLPDRDL-TEIGERGVNISGGQKQRV 773 (1303)
Q Consensus 706 ayv~Q~p---~l~-~~TireNI~~g~~~~~~-------~~~~vl~~~~l~~~i~~lp~g~~-T~ige~G~~LSGGQkQRi 773 (1303)
+|++|++ .++ +.|++||+.++...... .+...-+.....+.++.+ |.. .........||||||||+
T Consensus 341 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~qrv 418 (510)
T PRK09700 341 AYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELL--ALKCHSVNQNITELSGGNQQKV 418 (510)
T ss_pred EEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhc--CCCCCCccCccccCChHHHHHH
Confidence 9999984 455 46999999876421000 000000001112223332 111 112344567999999999
Q ss_pred HHHHHHHH-----------------------HHHhHh-cCCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCH
Q 000746 774 SMARAVFN-----------------------SCIKEE-LRGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSF 823 (1303)
Q Consensus 774 aLARAl~~-----------------------~~i~~~-~~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~ 823 (1303)
+||||+.. +.+++. .+++|+|+|||+++.+ ..||++++|++|++++.++.
T Consensus 419 ~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 419 LISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred HHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence 99999542 233332 2489999999999876 56999999999999988765
No 365
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=7.5e-22 Score=248.59 Aligned_cols=176 Identities=21% Similarity=0.387 Sum_probs=133.1
Q ss_pred CCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc--CeEEEEccCc--c
Q 000746 638 LPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR--GTVAYVPQIS--W 713 (1303)
Q Consensus 638 ~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~--~~iayv~Q~p--~ 713 (1303)
...++++|+++.|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|. +.+. .+++|++|++ .
T Consensus 310 ~~~l~~~~l~~~y~~-~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~-i~~~~~~~igy~~Q~~~~~ 387 (638)
T PRK10636 310 NPLLKMEKVSAGYGD-RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGE-IGLAKGIKLGYFAQHQLEF 387 (638)
T ss_pred CceEEEEeeEEEeCC-eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCe-EEECCCEEEEEecCcchhh
Confidence 446999999999964 46999999999999999999999999999999999999999875 4443 3699999985 3
Q ss_pred cc-cccHHHHHcc-CCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH----------
Q 000746 714 IF-NATLRKNILF-GSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN---------- 781 (1303)
Q Consensus 714 l~-~~TireNI~~-g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~---------- 781 (1303)
+. +.|+.+++.. .....+++..++++..++..+ ........||||||||++||||++.
T Consensus 388 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~----------~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEP 457 (638)
T PRK10636 388 LRADESPLQHLARLAPQELEQKLRDYLGGFGFQGD----------KVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEP 457 (638)
T ss_pred CCccchHHHHHHHhCchhhHHHHHHHHHHcCCChh----------HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 43 4588888742 211223344444444443211 1223446799999999999999542
Q ss_pred -------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEE-EecCHHHHH
Q 000746 782 -------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIK-EEGSFEELS 827 (1303)
Q Consensus 782 -------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~-~~g~~~~l~ 827 (1303)
+.+.+. +.|+|+|||+++++. .||+|++|++|+++ ..|++++..
T Consensus 458 t~~LD~~~~~~l~~~L~~~--~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 458 TNHLDLDMRQALTEALIDF--EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred CCCCCHHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 233333 359999999999975 59999999999997 789988863
No 366
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.87 E-value=6e-22 Score=201.80 Aligned_cols=118 Identities=31% Similarity=0.531 Sum_probs=101.7
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcC--eEEEEccCccccccc
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG--TVAYVPQISWIFNAT 718 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~--~iayv~Q~p~l~~~T 718 (1303)
++++|+++.|++. ++++|+||++++||.++|+|+||||||||+++|.|+++|.+| .+.+++ .++|++|
T Consensus 1 l~~~~l~~~~~~~-~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G-~i~~~~~~~i~~~~~-------- 70 (144)
T cd03221 1 IELENLSKTYGGK-LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEG-IVTWGSTVKIGYFEQ-------- 70 (144)
T ss_pred CEEEEEEEEECCc-eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCce-EEEECCeEEEEEEcc--------
Confidence 4689999999753 699999999999999999999999999999999999999887 455554 6999998
Q ss_pred HHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-----------------
Q 000746 719 LRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN----------------- 781 (1303)
Q Consensus 719 ireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~----------------- 781 (1303)
||||||||++||||+..
T Consensus 71 ----------------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~ 104 (144)
T cd03221 71 ----------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLE 104 (144)
T ss_pred ----------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 99999999999999642
Q ss_pred ------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCE
Q 000746 782 ------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGM 816 (1303)
Q Consensus 782 ------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~ 816 (1303)
+.+++. ++|++++||+++.+. .+|++++|++|+
T Consensus 105 ~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 105 SIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred HHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 223332 589999999999885 489999999985
No 367
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.87 E-value=8.9e-22 Score=245.46 Aligned_cols=176 Identities=20% Similarity=0.341 Sum_probs=131.4
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcC--eEEEEccCc-ccc
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG--TVAYVPQIS-WIF 715 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~--~iayv~Q~p-~l~ 715 (1303)
..++++|+++.|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|. +.+.+ .|+|+||++ .++
T Consensus 323 ~~l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~-i~~~~~~~i~~v~q~~~~~~ 400 (556)
T PRK11819 323 KVIEAENLSKSFGD-RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGT-IKIGETVKLAYVDQSRDALD 400 (556)
T ss_pred eEEEEEeEEEEECC-eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeE-EEECCceEEEEEeCchhhcC
Confidence 46999999999975 36999999999999999999999999999999999999999875 44444 599999997 555
Q ss_pred -cccHHHHHccCCCC---C--hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH--------
Q 000746 716 -NATLRKNILFGSEF---D--PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN-------- 781 (1303)
Q Consensus 716 -~~TireNI~~g~~~---~--~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~-------- 781 (1303)
+.|++||+.++... + +.+....++..++.+ ........+||||||||++||||++.
T Consensus 401 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD 470 (556)
T PRK11819 401 PNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKG----------GDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLD 470 (556)
T ss_pred CCCCHHHHHHhhcccccccccHHHHHHHHHhCCCCh----------hHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 46999999876421 1 122222222222211 01223456799999999999999642
Q ss_pred ---------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeC-CEEE-EecCHHHHHh
Q 000746 782 ---------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSE-GMIK-EEGSFEELSK 828 (1303)
Q Consensus 782 ---------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~-G~i~-~~g~~~~l~~ 828 (1303)
+.+.+. + .|+|+|||+++.+. .||+|++|++ |++. ..|+++++.+
T Consensus 471 EPt~~LD~~~~~~l~~~l~~~-~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~ 533 (556)
T PRK11819 471 EPTNDLDVETLRALEEALLEF-P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEE 533 (556)
T ss_pred CCCCCCCHHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHH
Confidence 223222 3 49999999999865 5999999985 7877 4788776644
No 368
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.87 E-value=1.2e-21 Score=229.22 Aligned_cols=175 Identities=25% Similarity=0.360 Sum_probs=135.0
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcC--------------e
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG--------------T 704 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~--------------~ 704 (1303)
+.++++|++.+|+.- ++|+|+||++.+||+++++|.||+|||||+|.|.|.++|++| .+.+++ .
T Consensus 7 ~ll~~~~i~K~FggV-~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G-~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 7 PLLELRGISKSFGGV-KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSG-EILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred ceeeeecceEEcCCc-eeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCc-eEEECCEEccCCCHHHHHhCC
Confidence 468899999999864 699999999999999999999999999999999999999997 444433 4
Q ss_pred EEEEccCcccc-cccHHHHHccCCCCC-------hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHH
Q 000746 705 VAYVPQISWIF-NATLRKNILFGSEFD-------PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMA 776 (1303)
Q Consensus 705 iayv~Q~p~l~-~~TireNI~~g~~~~-------~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLA 776 (1303)
|+.|.|+.-|+ +-||.|||-+|++.. ..+..+..+ .+-+.+.. +...++.| .+||+||||-|+||
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~--~~l~~lg~-~~~~~~~v----~~LsiaqrQ~VeIA 157 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRAR--ELLARLGL-DIDPDTLV----GDLSIAQRQMVEIA 157 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHH--HHHHHcCC-CCChhhhh----hhCCHHHHHHHHHH
Confidence 99999999987 779999999987532 233222211 11111111 11133444 56999999999999
Q ss_pred HHHHH-----------------------HHHhHhc-CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecC
Q 000746 777 RAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGS 822 (1303)
Q Consensus 777 RAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~ 822 (1303)
||+.. +.+++.. +|.++|+||||++.+ .-||+|.||.||+.+..++
T Consensus 158 rAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 158 RALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 99532 1233332 799999999999885 5699999999999998777
No 369
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.87 E-value=4.8e-22 Score=245.37 Aligned_cols=177 Identities=18% Similarity=0.229 Sum_probs=129.6
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc--------------Ce
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR--------------GT 704 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~--------------~~ 704 (1303)
..++++|+++. .+++|+||+|++||+++|+||||||||||+++|+|+++|.+|.+ .+. ..
T Consensus 256 ~~l~~~~~~~~-----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i-~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 256 VRLRLDGLKGP-----GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQV-YLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred cEEEEeccccC-----CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceE-EECCEECCCCCHHHHHhCC
Confidence 35889999842 48999999999999999999999999999999999999988754 332 35
Q ss_pred EEEEccCcc---cc-cccHHHHHccCCCC---------ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHH
Q 000746 705 VAYVPQISW---IF-NATLRKNILFGSEF---------DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQ 771 (1303)
Q Consensus 705 iayv~Q~p~---l~-~~TireNI~~g~~~---------~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQ 771 (1303)
++|++|+|. ++ +.|+.||+.++... ++.+-+ ....+.++.+.-. .........+|||||||
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~-~~~~~~~~~~LSgGq~q 403 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEA-----ENADRFIRSLNIK-TPSREQLIMNLSGGNQQ 403 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHH-----HHHHHHHHhcCcc-cCCccCccccCCHHHHH
Confidence 899999973 55 57999999875311 111100 1112223332110 01123345689999999
Q ss_pred HHHHHHHHHH-----------------------HHHhHhc-CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHHH
Q 000746 772 RVSMARAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEEL 826 (1303)
Q Consensus 772 RiaLARAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~l 826 (1303)
|++||||+.. +.+.+.. .+.|+|+|||+++.+ ..||++++|++|++++.|+.++.
T Consensus 404 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 404 KAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQA 483 (501)
T ss_pred HHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccC
Confidence 9999999542 2333332 478999999999987 56999999999999999988765
Q ss_pred H
Q 000746 827 S 827 (1303)
Q Consensus 827 ~ 827 (1303)
.
T Consensus 484 ~ 484 (501)
T PRK11288 484 T 484 (501)
T ss_pred C
Confidence 4
No 370
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.87 E-value=1.1e-21 Score=244.65 Aligned_cols=175 Identities=19% Similarity=0.330 Sum_probs=130.5
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcC--eEEEEccCcc-cc
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG--TVAYVPQISW-IF 715 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~--~iayv~Q~p~-l~ 715 (1303)
+.++++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|.|+.+|++|.+ .+.+ .|+|++|++. ++
T Consensus 321 ~~l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i-~~~~~~~i~~v~q~~~~~~ 398 (552)
T TIGR03719 321 KVIEAENLSKGFGD-KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI-KIGETVKLAYVDQSRDALD 398 (552)
T ss_pred eEEEEeeEEEEECC-eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEE-EECCceEEEEEeCCccccC
Confidence 46999999999965 469999999999999999999999999999999999999999754 4443 5999999973 55
Q ss_pred -cccHHHHHccCCCC---C--hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH--------
Q 000746 716 -NATLRKNILFGSEF---D--PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN-------- 781 (1303)
Q Consensus 716 -~~TireNI~~g~~~---~--~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~-------- 781 (1303)
+.|++||+.++... + +.+..+.++..++.++ .......+||||||||++||||+..
T Consensus 399 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGe~qrv~la~al~~~p~lllLD 468 (552)
T TIGR03719 399 PNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGS----------DQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLD 468 (552)
T ss_pred CCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChh----------HhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEe
Confidence 56999999986431 1 1122222222222110 1233456799999999999999643
Q ss_pred ---------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeC-CEEE-EecCHHHHH
Q 000746 782 ---------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSE-GMIK-EEGSFEELS 827 (1303)
Q Consensus 782 ---------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~-G~i~-~~g~~~~l~ 827 (1303)
+.+.+. . .|+|+|||+++.+. .||+|++|++ |++. ..|+++++.
T Consensus 469 EPt~~LD~~~~~~l~~~l~~~-~-~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~ 530 (552)
T TIGR03719 469 EPTNDLDVETLRALEEALLEF-A-GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYE 530 (552)
T ss_pred CCCCCCCHHHHHHHHHHHHHC-C-CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHH
Confidence 223222 3 59999999999876 5999999986 5876 557776654
No 371
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.87 E-value=3.4e-22 Score=247.04 Aligned_cols=180 Identities=22% Similarity=0.316 Sum_probs=129.2
Q ss_pred CcEEEEeeEEEeCC--CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC-CCCceEEE--------------
Q 000746 639 PAVSIKNGNFSWDS--KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP-LKDASVVI-------------- 701 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~--~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~-~~g~~~~~-------------- 701 (1303)
..++++|+++.|+. +.++++|+||+|++||+++|+||||||||||+++|+|.++| .+|. +.+
T Consensus 256 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~-i~~~g~~~~~~~~~~~~ 334 (500)
T TIGR02633 256 VILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGN-VFINGKPVDIRNPAQAI 334 (500)
T ss_pred ceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeE-EEECCEECCCCCHHHHH
Confidence 35899999999842 24699999999999999999999999999999999999985 6764 333
Q ss_pred cCeEEEEccCc---ccc-cccHHHHHccCCC--C------ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHH
Q 000746 702 RGTVAYVPQIS---WIF-NATLRKNILFGSE--F------DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQ 769 (1303)
Q Consensus 702 ~~~iayv~Q~p---~l~-~~TireNI~~g~~--~------~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQ 769 (1303)
+.+++|++|++ .++ +.|++||+.++.. + +++..+ ....+.++.+.-.. .........|||||
T Consensus 335 ~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~-~~~~~~~~~LSgGq 408 (500)
T TIGR02633 335 RAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAEL-----QIIGSAIQRLKVKT-ASPFLPIGRLSGGN 408 (500)
T ss_pred hCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHH-----HHHHHHHHhcCccC-CCccCccccCCHHH
Confidence 23599999996 355 5699999988531 1 111101 11122222221110 01223446799999
Q ss_pred HHHHHHHHHHHH-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHH
Q 000746 770 KQRVSMARAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFE 824 (1303)
Q Consensus 770 kQRiaLARAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~ 824 (1303)
|||++||||+.. +.+.... ++.|+|++||+++.+. .||++++|++|+++..++.+
T Consensus 409 kqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~ 488 (500)
T TIGR02633 409 QQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNH 488 (500)
T ss_pred HHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccc
Confidence 999999999642 2233322 5789999999999875 69999999999999876544
Q ss_pred H
Q 000746 825 E 825 (1303)
Q Consensus 825 ~ 825 (1303)
+
T Consensus 489 ~ 489 (500)
T TIGR02633 489 A 489 (500)
T ss_pred c
Confidence 3
No 372
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.87 E-value=1.4e-21 Score=246.99 Aligned_cols=178 Identities=22% Similarity=0.330 Sum_probs=131.5
Q ss_pred CCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcC--eEEEEccCc-cc
Q 000746 638 LPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG--TVAYVPQIS-WI 714 (1303)
Q Consensus 638 ~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~--~iayv~Q~p-~l 714 (1303)
...++++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+ .+.. .|+|++|++ .+
T Consensus 317 ~~~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i-~~~~~~~i~y~~q~~~~l 394 (635)
T PRK11147 317 KIVFEMENVNYQIDG-KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRI-HCGTKLEVAYFDQHRAEL 394 (635)
T ss_pred CceEEEeeeEEEECC-eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE-EECCCcEEEEEeCccccc
Confidence 346899999999975 469999999999999999999999999999999999999998754 4433 599999986 35
Q ss_pred c-cccHHHHHccCCC-C--C--hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-------
Q 000746 715 F-NATLRKNILFGSE-F--D--PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN------- 781 (1303)
Q Consensus 715 ~-~~TireNI~~g~~-~--~--~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~------- 781 (1303)
+ +.|+.||+.++.+ . + +.+..+.++..++..+ ........||||||||++||||++.
T Consensus 395 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGekqRl~la~al~~~p~lLlL 464 (635)
T PRK11147 395 DPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPK----------RAMTPVKALSGGERNRLLLARLFLKPSNLLIL 464 (635)
T ss_pred CCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHH----------HHhChhhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 4 4599999987542 1 1 1122222222222111 1223345799999999999999642
Q ss_pred ------------HHHhHhcC--CCEEEEEecCCCccc-ccCEEEEEe-CCEEEE-ecCHHHHH
Q 000746 782 ------------SCIKEELR--GKTRILVTNQLHFLP-HVDRIILVS-EGMIKE-EGSFEELS 827 (1303)
Q Consensus 782 ------------~~i~~~~~--~~TvilvtH~~~~l~-~aD~ii~l~-~G~i~~-~g~~~~l~ 827 (1303)
+.+.+.++ +.|+|+|||+.+++. .||+|++++ +|++.+ .|+|++..
T Consensus 465 DEPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~ 527 (635)
T PRK11147 465 DEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDAR 527 (635)
T ss_pred cCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHH
Confidence 12222221 469999999999875 599999998 899876 57787763
No 373
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.87 E-value=4.1e-22 Score=196.56 Aligned_cols=180 Identities=22% Similarity=0.376 Sum_probs=128.2
Q ss_pred EEEEeeEEEeCCC--------CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------
Q 000746 641 VSIKNGNFSWDSK--------SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------ 700 (1303)
Q Consensus 641 i~~~~~~f~~~~~--------~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------ 700 (1303)
++++|++.++... ..+.+.|||++++|+..+|+|.||||||||.+.|.|.++|++|....
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~ 84 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSF 84 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHh
Confidence 4556665554322 14789999999999999999999999999999999999999975432
Q ss_pred EcCeEEEEccCccc-cc-----ccH-----HHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHH
Q 000746 701 IRGTVAYVPQISWI-FN-----ATL-----RKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQ 769 (1303)
Q Consensus 701 ~~~~iayv~Q~p~l-~~-----~Ti-----reNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQ 769 (1303)
..++|-.+.|||-- || |+| +-|-.+..+...+++.+.++.++|..|-..+ ....||-||
T Consensus 85 R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~----------~~~~la~~Q 154 (267)
T COG4167 85 RSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANY----------YPHMLAPGQ 154 (267)
T ss_pred hhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCcccccc----------chhhcCchh
Confidence 12469999999842 22 222 2222222222234555566666665442221 245699999
Q ss_pred HHHHHHHHHHH--------HHHHh-----------H------hcCCCEEEEEecCCCcccc-cCEEEEEeCCEEEEecCH
Q 000746 770 KQRVSMARAVF--------NSCIK-----------E------ELRGKTRILVTNQLHFLPH-VDRIILVSEGMIKEEGSF 823 (1303)
Q Consensus 770 kQRiaLARAl~--------~~~i~-----------~------~~~~~TvilvtH~~~~l~~-aD~ii~l~~G~i~~~g~~ 823 (1303)
|||||||||++ ++++. + ...|-.-|.|++++-.+++ +|+|+||++|+++|.|+.
T Consensus 155 KQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t 234 (267)
T COG4167 155 KQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGST 234 (267)
T ss_pred HHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCCh
Confidence 99999999953 22221 1 1148899999999999876 899999999999999999
Q ss_pred HHHHhcc
Q 000746 824 EELSKHG 830 (1303)
Q Consensus 824 ~~l~~~~ 830 (1303)
.++...+
T Consensus 235 ~~v~a~P 241 (267)
T COG4167 235 ADVLASP 241 (267)
T ss_pred hhhhcCC
Confidence 9998654
No 374
>PRK13409 putative ATPase RIL; Provisional
Probab=99.87 E-value=8.9e-22 Score=244.07 Aligned_cols=170 Identities=20% Similarity=0.256 Sum_probs=132.1
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcCeEEEEccCccc-ccc
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWI-FNA 717 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~~iayv~Q~p~l-~~~ 717 (1303)
..++++|+++.|++ ..|+++|++|++||+++|+||||||||||+++|.|+++|++|. +.+...++|+||++.+ ++.
T Consensus 339 ~~l~~~~ls~~~~~--~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~-I~~~~~i~y~~Q~~~~~~~~ 415 (590)
T PRK13409 339 TLVEYPDLTKKLGD--FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGE-VDPELKISYKPQYIKPDYDG 415 (590)
T ss_pred eEEEEcceEEEECC--EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEEeeeEEEecccccCCCCC
Confidence 46899999999964 3599999999999999999999999999999999999999874 4445679999999875 477
Q ss_pred cHHHHHccCCC-CC-hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH--------------
Q 000746 718 TLRKNILFGSE-FD-PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN-------------- 781 (1303)
Q Consensus 718 TireNI~~g~~-~~-~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~-------------- 781 (1303)
|++||+.++.. ++ +....++++..++.+. ......+||||||||++||||+..
T Consensus 416 tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~-----------~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~L 484 (590)
T PRK13409 416 TVEDLLRSITDDLGSSYYKSEIIKPLQLERL-----------LDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHL 484 (590)
T ss_pred cHHHHHHHHhhhcChHHHHHHHHHHCCCHHH-----------HhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCC
Confidence 99999987532 22 2233445555555422 223446799999999999999642
Q ss_pred ---------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCH
Q 000746 782 ---------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSF 823 (1303)
Q Consensus 782 ---------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~ 823 (1303)
+.+++.. .++|+|+|||+++.+. .||++++|++ ++...|+.
T Consensus 485 D~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~~ 537 (590)
T PRK13409 485 DVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGHA 537 (590)
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeeec
Confidence 3344432 3789999999999865 5999999965 77777763
No 375
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.87 E-value=1.2e-21 Score=241.87 Aligned_cols=174 Identities=21% Similarity=0.345 Sum_probs=128.5
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc--------------Ce
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR--------------GT 704 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~--------------~~ 704 (1303)
+.++++|+++ ++|+|+||+|++||+++|+||||||||||+++|.|+++|++|.+ .+. ..
T Consensus 256 ~~l~~~~l~~------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I-~~~g~~i~~~~~~~~~~~~ 328 (501)
T PRK10762 256 VRLKVDNLSG------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYV-TLDGHEVVTRSPQDGLANG 328 (501)
T ss_pred cEEEEeCccc------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEE-EECCEECCCCCHHHHHHCC
Confidence 4689999984 37999999999999999999999999999999999999988743 332 35
Q ss_pred EEEEccCc---ccc-cccHHHHHccCCC---------CChhhHHHHHHHHhhHHHhhcCCCCCC-ccccCCCCCCchHHH
Q 000746 705 VAYVPQIS---WIF-NATLRKNILFGSE---------FDPAKYWKTVDVSALQHDLDLLPDRDL-TEIGERGVNISGGQK 770 (1303)
Q Consensus 705 iayv~Q~p---~l~-~~TireNI~~g~~---------~~~~~~~~vl~~~~l~~~i~~lp~g~~-T~ige~G~~LSGGQk 770 (1303)
++|+||+| .++ +.|++||+.++.. .+.++.. ....+.++.+ |.. .........||||||
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgGek 401 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQ-----QAVSDFIRLF--NIKTPSMEQAIGLLSGGNQ 401 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHH-----HHHHHHHHhc--CCCCCCccCchhhCCHHHH
Confidence 99999997 354 5799999987521 1111111 1112222322 111 123445668999999
Q ss_pred HHHHHHHHHHH-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHH
Q 000746 771 QRVSMARAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEE 825 (1303)
Q Consensus 771 QRiaLARAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~ 825 (1303)
||++||||++. +.+++.. +|+|+|++||+++.+. .||+|++|++|+++..|+.++
T Consensus 402 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 481 (501)
T PRK10762 402 QKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQ 481 (501)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecccc
Confidence 99999999642 2333332 4789999999999864 699999999999999998776
Q ss_pred H
Q 000746 826 L 826 (1303)
Q Consensus 826 l 826 (1303)
+
T Consensus 482 ~ 482 (501)
T PRK10762 482 A 482 (501)
T ss_pred C
Confidence 5
No 376
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.87 E-value=2.1e-21 Score=204.24 Aligned_cols=162 Identities=28% Similarity=0.373 Sum_probs=131.1
Q ss_pred CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcCeEEEEccCcc--cccccHHHHHccCC-----
Q 000746 655 PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISW--IFNATLRKNILFGS----- 727 (1303)
Q Consensus 655 ~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~~iayv~Q~p~--l~~~TireNI~~g~----- 727 (1303)
.+|+||||++++||.++|+|+||||||||+++|.|.++|++| .+..+++|++.-.-.. -.+.|-||||.+-.
T Consensus 41 ~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G-~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~ 119 (249)
T COG1134 41 WALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSG-KVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGL 119 (249)
T ss_pred EEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCc-eEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCc
Confidence 589999999999999999999999999999999999999997 6778898885544332 23569999997532
Q ss_pred --CCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHH--------------------HHHHHh
Q 000746 728 --EFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAV--------------------FNSCIK 785 (1303)
Q Consensus 728 --~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl--------------------~~~~i~ 785 (1303)
+.-+++++++++-+.|.+.++. | -.+.|-|.+.|++.|=|. .++|..
T Consensus 120 ~~~ei~~~~~eIieFaELG~fi~~-P----------vktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~ 188 (249)
T COG1134 120 TRKEIDEKVDEIIEFAELGDFIDQ-P----------VKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLE 188 (249)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhC-c----------hhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHH
Confidence 2335677788888888766542 3 357999999999999882 233433
Q ss_pred ---Hh-cCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHh
Q 000746 786 ---EE-LRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 786 ---~~-~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
+. .+++|+|+|||+++.++ .||++++|++|++...|++++..+
T Consensus 189 rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~ 236 (249)
T COG1134 189 RLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236 (249)
T ss_pred HHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHH
Confidence 33 47899999999999975 599999999999999999999874
No 377
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.86 E-value=8.7e-22 Score=228.18 Aligned_cols=146 Identities=27% Similarity=0.380 Sum_probs=111.2
Q ss_pred EEcCCCCChHHHHHHHhcCCCCCCCceEEE-----------cCeEEEEccCccccc-ccHHHHHccCCC---CChh----
Q 000746 672 IVGGTGEGKTSLVSAMLGELPPLKDASVVI-----------RGTVAYVPQISWIFN-ATLRKNILFGSE---FDPA---- 732 (1303)
Q Consensus 672 ivG~sGsGKSTLl~~llg~~~~~~g~~~~~-----------~~~iayv~Q~p~l~~-~TireNI~~g~~---~~~~---- 732 (1303)
|+||||||||||+++|+|+++|++|. +.+ ++.++|++|++.+|. .|++||+.|+.. .+++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~-I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~ 79 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGS-IMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKP 79 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceE-EEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHH
Confidence 58999999999999999999999874 333 236999999999985 599999998642 2222
Q ss_pred hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH-----------------------HHHhHhc-
Q 000746 733 KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN-----------------------SCIKEEL- 788 (1303)
Q Consensus 733 ~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~-----------------------~~i~~~~- 788 (1303)
+..++++..++.+ .......+||||||||++||||+.. +.+.+..
T Consensus 80 ~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~ 148 (325)
T TIGR01187 80 RVLEALRLVQLEE-----------FADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQE 148 (325)
T ss_pred HHHHHHHHcCCcc-----------hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 2333444333322 2233456899999999999999642 2333332
Q ss_pred -CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 789 -RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 789 -~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
.++|+|+|||+++.+. .||+|++|++|++.+.|+++++.+.
T Consensus 149 ~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~ 191 (325)
T TIGR01187 149 QLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE 191 (325)
T ss_pred hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 3799999999998864 6999999999999999999998764
No 378
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.86 E-value=1.2e-21 Score=242.03 Aligned_cols=175 Identities=19% Similarity=0.359 Sum_probs=127.8
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc--------------Ce
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR--------------GT 704 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~--------------~~ 704 (1303)
..++++|++. .+|+|+||++++|++++|+||||||||||+++|.|+++|.+|. +.+. ..
T Consensus 267 ~~l~~~~l~~------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~-i~~~g~~i~~~~~~~~~~~~ 339 (510)
T PRK15439 267 PVLTVEDLTG------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGR-IMLNGKEINALSTAQRLARG 339 (510)
T ss_pred ceEEEeCCCC------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcE-EEECCEECCCCCHHHHHhCC
Confidence 3589999983 2699999999999999999999999999999999999998874 3332 35
Q ss_pred EEEEccCc---ccc-cccHHHHHccCC----CC--ChhhHHHHHHHHhhHHHhhcCCCCCC-ccccCCCCCCchHHHHHH
Q 000746 705 VAYVPQIS---WIF-NATLRKNILFGS----EF--DPAKYWKTVDVSALQHDLDLLPDRDL-TEIGERGVNISGGQKQRV 773 (1303)
Q Consensus 705 iayv~Q~p---~l~-~~TireNI~~g~----~~--~~~~~~~vl~~~~l~~~i~~lp~g~~-T~ige~G~~LSGGQkQRi 773 (1303)
|+|+||++ -++ +.|+.||+.... .. .....++ ..++.++.+ |.. .........||||||||+
T Consensus 340 i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgG~kqrl 412 (510)
T PRK15439 340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENA-----VLERYRRAL--NIKFNHAEQAARTLSGGNQQKV 412 (510)
T ss_pred cEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHH-----HHHHHHHHc--CCCCCCccCccccCCcHHHHHH
Confidence 99999986 255 459999996421 11 1111111 112223332 111 123345567999999999
Q ss_pred HHHHHHHH-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHH
Q 000746 774 SMARAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELS 827 (1303)
Q Consensus 774 aLARAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~ 827 (1303)
+||||+.. +.+.+.. +++|+|+|||+++.+. .||++++|++|+++..|+.+++.
T Consensus 413 ~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 491 (510)
T PRK15439 413 LIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAIN 491 (510)
T ss_pred HHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCC
Confidence 99999642 2333332 4899999999999875 59999999999999999887765
No 379
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.86 E-value=1.3e-21 Score=218.42 Aligned_cols=165 Identities=22% Similarity=0.233 Sum_probs=118.6
Q ss_pred EeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceE----------EE------------
Q 000746 644 KNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASV----------VI------------ 701 (1303)
Q Consensus 644 ~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~----------~~------------ 701 (1303)
.|++++|++..++|+|+| .+++||+++|+||||||||||+++|+|+++|++|.+. .+
T Consensus 4 ~~~~~~y~~~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82 (255)
T ss_pred cCcceeecCcchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHh
Confidence 468899975546999999 5999999999999999999999999999999998642 01
Q ss_pred -cC--eEEEEccCcccccccHHHHHccCC-CC-ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHH
Q 000746 702 -RG--TVAYVPQISWIFNATLRKNILFGS-EF-DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMA 776 (1303)
Q Consensus 702 -~~--~iayv~Q~p~l~~~TireNI~~g~-~~-~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLA 776 (1303)
++ .++|++|++.++..++.+|+...- .. .+++..++++..++. .....+..+||||||||++||
T Consensus 83 ~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G~~qrv~la 151 (255)
T cd03236 83 LEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELR-----------HVLDRNIDQLSGGELQRVAIA 151 (255)
T ss_pred hhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCc-----------hhhcCChhhCCHHHHHHHHHH
Confidence 11 368888887766655555554321 11 123444444444332 234456678999999999999
Q ss_pred HHHHH-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEec
Q 000746 777 RAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEG 821 (1303)
Q Consensus 777 RAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g 821 (1303)
||++. +.+++.. +++|+|++||+++.+. .||+|++|+ |++.+.|
T Consensus 152 ral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 152 AALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred HHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcce
Confidence 99642 2333332 4799999999999987 599999995 5565433
No 380
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.85 E-value=3.4e-21 Score=184.23 Aligned_cols=159 Identities=25% Similarity=0.425 Sum_probs=121.4
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCC---CCceEE-----------EcCeEE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPL---KDASVV-----------IRGTVA 706 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~---~g~~~~-----------~~~~ia 706 (1303)
+.++|++..-++. -.|.|+|++|.+||++-+.||||||||||+.-+.|.+.+. +| ..+ -++++|
T Consensus 3 l~l~nvsl~l~g~-cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G-~~~l~~~~l~~lPa~qRq~G 80 (213)
T COG4136 3 LCLKNVSLRLPGS-CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTG-ELWLNEQRLDMLPAAQRQIG 80 (213)
T ss_pred eeeeeeeecCCCc-eEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceee-EEEECCeeccccchhhhhee
Confidence 5688999877654 5799999999999999999999999999999999998763 23 232 246899
Q ss_pred EEccCcccc-cccHHHHHccCCCCC------hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHH
Q 000746 707 YVPQISWIF-NATLRKNILFGSEFD------PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAV 779 (1303)
Q Consensus 707 yv~Q~p~l~-~~TireNI~~g~~~~------~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl 779 (1303)
...||+|+| .-+|-+||.|.-|.+ ......+++..+|+..+.+.| .+||||||.||+|-|++
T Consensus 81 iLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP-----------~tlSGGQrARvaL~R~L 149 (213)
T COG4136 81 ILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDP-----------ATLSGGQRARVALLRAL 149 (213)
T ss_pred eeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcCh-----------hhcCcchHHHHHHHHHH
Confidence 999999999 569999999987643 122344566666666555544 56999999999999996
Q ss_pred HH---------------HHHhHh----------cCCCEEEEEecCCCcccccCEEEEE
Q 000746 780 FN---------------SCIKEE----------LRGKTRILVTNQLHFLPHVDRIILV 812 (1303)
Q Consensus 780 ~~---------------~~i~~~----------~~~~TvilvtH~~~~l~~aD~ii~l 812 (1303)
+. .++++. ..+--+|+|||+.+..+.-.+|+.|
T Consensus 150 la~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 150 LAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred HhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence 42 222221 1477899999999998865566554
No 381
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.85 E-value=2.3e-21 Score=239.00 Aligned_cols=171 Identities=22% Similarity=0.364 Sum_probs=123.7
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC-CCCceEE-------------EcCe
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP-LKDASVV-------------IRGT 704 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~-~~g~~~~-------------~~~~ 704 (1303)
+.++++|+++.|++ ..+|+|+||++++||+++|+||||||||||+++|+|+.++ .+|.+.. .+.+
T Consensus 259 ~~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 337 (490)
T PRK10938 259 PRIVLNNGVVSYND-RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKH 337 (490)
T ss_pred ceEEEeceEEEECC-eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhh
Confidence 46999999999975 3699999999999999999999999999999999998765 4664321 1245
Q ss_pred EEEEccCcccc---cccHHHHHccCCC--------CCh---hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHH
Q 000746 705 VAYVPQISWIF---NATLRKNILFGSE--------FDP---AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQK 770 (1303)
Q Consensus 705 iayv~Q~p~l~---~~TireNI~~g~~--------~~~---~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQk 770 (1303)
|+|++|++.++ ..|+++++.++.. ..+ ++..+.++.+++.++ .......+||||||
T Consensus 338 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGq~ 407 (490)
T PRK10938 338 IGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKR----------TADAPFHSLSWGQQ 407 (490)
T ss_pred ceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchh----------hccCchhhCCHHHH
Confidence 99999998664 2477777754310 111 223333433333221 12234467999999
Q ss_pred HHHHHHHHHHH-----------------------HHHhHhc-CC-CEEEEEecCCCcccc--cCEEEEEeCCEEEEe
Q 000746 771 QRVSMARAVFN-----------------------SCIKEEL-RG-KTRILVTNQLHFLPH--VDRIILVSEGMIKEE 820 (1303)
Q Consensus 771 QRiaLARAl~~-----------------------~~i~~~~-~~-~TvilvtH~~~~l~~--aD~ii~l~~G~i~~~ 820 (1303)
||++||||+.. +.+.+.. ++ .|+|+|||+++.+.. ||++++|++|++++.
T Consensus 408 qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 408 RLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence 99999999642 2233332 33 469999999999863 899999999998864
No 382
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.85 E-value=4.1e-21 Score=201.07 Aligned_cols=121 Identities=30% Similarity=0.343 Sum_probs=99.9
Q ss_pred EeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcC-eEEEEccCcccccccHHHH
Q 000746 644 KNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG-TVAYVPQISWIFNATLRKN 722 (1303)
Q Consensus 644 ~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~-~iayv~Q~p~l~~~TireN 722 (1303)
.|+++.|++ .+++++ ++++++||+++|+||||||||||+++|+|+++|++| .+.+.+ .++|++|++.
T Consensus 4 ~~l~~~~~~-~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~q~~~--------- 71 (177)
T cd03222 4 PDCVKRYGV-FFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGD-NDEWDGITPVYKPQYID--------- 71 (177)
T ss_pred CCeEEEECC-EEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCc-EEEECCEEEEEEcccCC---------
Confidence 578888865 467888 499999999999999999999999999999999887 455655 5899998653
Q ss_pred HccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH---------------------
Q 000746 723 ILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN--------------------- 781 (1303)
Q Consensus 723 I~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~--------------------- 781 (1303)
||||||||++||||+..
T Consensus 72 ------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~ 109 (177)
T cd03222 72 ------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLN 109 (177)
T ss_pred ------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHH
Confidence 99999999999999542
Q ss_pred --HHHhHhc-C-CCEEEEEecCCCccc-ccCEEEEEeCCEEE
Q 000746 782 --SCIKEEL-R-GKTRILVTNQLHFLP-HVDRIILVSEGMIK 818 (1303)
Q Consensus 782 --~~i~~~~-~-~~TvilvtH~~~~l~-~aD~ii~l~~G~i~ 818 (1303)
+.+.+.. + ++|+|++||+++.+. .||++++|+++..+
T Consensus 110 l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~ 151 (177)
T cd03222 110 AARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGV 151 (177)
T ss_pred HHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCcc
Confidence 2333332 3 489999999999987 59999999887554
No 383
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.84 E-value=4e-21 Score=201.58 Aligned_cols=177 Identities=24% Similarity=0.346 Sum_probs=129.5
Q ss_pred CCCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-------------EcC
Q 000746 637 ELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-------------IRG 703 (1303)
Q Consensus 637 ~~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-------------~~~ 703 (1303)
..+.|+++|+++.|.+ +++|+|||++|++||..+|+|||||||||||+.+.|+.+|.+|.... +|+
T Consensus 28 ~~~li~l~~v~v~r~g-k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk 106 (257)
T COG1119 28 NEPLIELKNVSVRRNG-KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRK 106 (257)
T ss_pred CcceEEecceEEEECC-EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHH
Confidence 3456999999999975 47999999999999999999999999999999999999998764321 467
Q ss_pred eEEEEccC---cccccccHHHHHccCC---------CCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHH
Q 000746 704 TVAYVPQI---SWIFNATLRKNILFGS---------EFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQ 771 (1303)
Q Consensus 704 ~iayv~Q~---p~l~~~TireNI~~g~---------~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQ 771 (1303)
+||||+-+ -+.-+.+++|-++=|. +++++++.++-. +.+.+ |.....+..=..||-||||
T Consensus 107 ~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~---lle~~-----g~~~la~r~~~~LS~Ge~r 178 (257)
T COG1119 107 RIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQW---LLELL-----GAKHLADRPFGSLSQGEQR 178 (257)
T ss_pred HhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHH---HHHHc-----chhhhccCchhhcCHhHHH
Confidence 89999843 2333678888887331 345554443322 11111 1111222333579999999
Q ss_pred HHHHHHHHHHH-----------------------HHhHhc---CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecC
Q 000746 772 RVSMARAVFNS-----------------------CIKEEL---RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGS 822 (1303)
Q Consensus 772 RiaLARAl~~~-----------------------~i~~~~---~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~ 822 (1303)
|+-||||++.+ .+.+.. .+.|+|+|||+.+.++ ..++++.+++|+++.+|.
T Consensus 179 rvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 179 RVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 99999996421 122222 3789999999999865 579999999999998874
No 384
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.2e-20 Score=232.45 Aligned_cols=177 Identities=20% Similarity=0.310 Sum_probs=126.5
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc--------------Ce
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR--------------GT 704 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~--------------~~ 704 (1303)
..|+++|+++.+ .++|+|+||++++||+++|+||||||||||+++|.|+.+|++|. +.+. ..
T Consensus 249 ~~i~~~~l~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~i~~~~~~~~~~~~ 324 (491)
T PRK10982 249 VILEVRNLTSLR---QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGT-ITLHGKKINNHNANEAINHG 324 (491)
T ss_pred cEEEEeCccccc---CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccE-EEECCEECCCCCHHHHHHCC
Confidence 468999999874 35999999999999999999999999999999999999998874 4332 23
Q ss_pred EEEEccCcc---cc-cccHHHHHccC-----CC----CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHH
Q 000746 705 VAYVPQISW---IF-NATLRKNILFG-----SE----FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQ 771 (1303)
Q Consensus 705 iayv~Q~p~---l~-~~TireNI~~g-----~~----~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQ 771 (1303)
++|++|++. +| +.|+.+|+... .. .+..... ....+.++.+.-+.+ .......+|||||||
T Consensus 325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~-~~~~~~~~LSgGq~q 398 (491)
T PRK10982 325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMK-----SDTQWVIDSMRVKTP-GHRTQIGSLSGGNQQ 398 (491)
T ss_pred CEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHH-----HHHHHHHHhcCccCC-CcccccccCCcHHHH
Confidence 899999863 45 45777774332 11 1111111 112223333321111 134556789999999
Q ss_pred HHHHHHHHHH-----------------------HHHhHhc-CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHH
Q 000746 772 RVSMARAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEE 825 (1303)
Q Consensus 772 RiaLARAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~ 825 (1303)
|++||||+.. +.+.... +++|+|++||+++.+. .||++++|++|+++..++.++
T Consensus 399 rv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~~ 477 (491)
T PRK10982 399 KVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKT 477 (491)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEcccc
Confidence 9999999532 2233322 5899999999999864 699999999999998776643
No 385
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.84 E-value=3.1e-20 Score=212.05 Aligned_cols=171 Identities=21% Similarity=0.344 Sum_probs=132.6
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc--------------Ce
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR--------------GT 704 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~--------------~~ 704 (1303)
..+++++++..|+ .-.+++||||++++||+.++.|.||+|||||.+.|.|.|+|++|.+ .++ ..
T Consensus 3 ~~l~~~~itK~f~-~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI-~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 3 PALEMRGITKRFP-GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI-RVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred ceEEEeccEEEcC-CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceE-EECCEEeccCCHHHHHHcC
Confidence 4689999999998 4468999999999999999999999999999999999999999854 333 35
Q ss_pred EEEEccCcccc-cccHHHHHccCCCCC------hh----hHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHH
Q 000746 705 VAYVPQISWIF-NATLRKNILFGSEFD------PA----KYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRV 773 (1303)
Q Consensus 705 iayv~Q~p~l~-~~TireNI~~g~~~~------~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRi 773 (1303)
||.|.|++-|+ +-|+.|||.+|.+-. .. +..+..+..+ ||--.+ +.-..||-||||||
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yG-------l~vdp~----~~V~dLsVG~qQRV 149 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYG-------LPVDPD----AKVADLSVGEQQRV 149 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhC-------CCCCcc----ceeecCCcchhHHH
Confidence 99999999998 569999999998632 11 2222222222 222222 34456999999999
Q ss_pred HHHHHHHHH-----------------------HHhHh-cCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecC
Q 000746 774 SMARAVFNS-----------------------CIKEE-LRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGS 822 (1303)
Q Consensus 774 aLARAl~~~-----------------------~i~~~-~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~ 822 (1303)
-|-+||+++ .++.. ..|+|||+|||+++.+. .||++-||..|+++..-+
T Consensus 150 EIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 150 EILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 999997642 12222 26999999999998865 599999999999875443
No 386
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.84 E-value=1.5e-20 Score=191.53 Aligned_cols=164 Identities=24% Similarity=0.351 Sum_probs=126.2
Q ss_pred CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc-------------CeEEEEccCccc---ccc
Q 000746 654 SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR-------------GTVAYVPQISWI---FNA 717 (1303)
Q Consensus 654 ~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~-------------~~iayv~Q~p~l---~~~ 717 (1303)
+++|+++|++|++|+++.|+|.||+|||||+++|.|.+.|++|.+ .+. ..++-|.|+|-- -+.
T Consensus 19 k~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I-~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~l 97 (263)
T COG1101 19 KRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQI-LIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL 97 (263)
T ss_pred HHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceE-EECceecccCCHHHHhhHHHHHhcchhhCCcccc
Confidence 479999999999999999999999999999999999999998744 332 247889999963 367
Q ss_pred cHHHHHccCCC------CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH--------H-
Q 000746 718 TLRKNILFGSE------FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN--------S- 782 (1303)
Q Consensus 718 TireNI~~g~~------~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~--------~- 782 (1303)
||.||+..... +....-.+ ....-.+.+..++.|++-.++++-.-|||||||-++|+-|.+. +
T Consensus 98 TieENl~la~~Rg~~rgl~~~ln~~--~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEH 175 (263)
T COG1101 98 TIEENLALAESRGKKRGLSSALNER--RRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEH 175 (263)
T ss_pred cHHHHHHHHHhcCcccccchhhhHH--HHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecch
Confidence 99999987431 21110000 1122334578889999988888888999999999999999431 1
Q ss_pred ----------HHh----Hh--cCCCEEEEEecCCCc-ccccCEEEEEeCCEEEEe
Q 000746 783 ----------CIK----EE--LRGKTRILVTNQLHF-LPHVDRIILVSEGMIKEE 820 (1303)
Q Consensus 783 ----------~i~----~~--~~~~TvilvtH~~~~-l~~aD~ii~l~~G~i~~~ 820 (1303)
.+. +. -.+-|.+||||+++. +.+-+|.++|++|+|+-.
T Consensus 176 TAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlD 230 (263)
T COG1101 176 TAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLD 230 (263)
T ss_pred hhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEE
Confidence 011 11 136799999999986 788999999999999964
No 387
>PLN03140 ABC transporter G family member; Provisional
Probab=99.83 E-value=4.7e-20 Score=247.68 Aligned_cols=178 Identities=20% Similarity=0.347 Sum_probs=135.0
Q ss_pred cEEEEeeEEEeCC------------CCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC--CCCceEEE----
Q 000746 640 AVSIKNGNFSWDS------------KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP--LKDASVVI---- 701 (1303)
Q Consensus 640 ~i~~~~~~f~~~~------------~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~--~~g~~~~~---- 701 (1303)
.+.++|+++..+. +..+|+|+|+++++|++++|+||||||||||+++|+|..++ .+|. +.+
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~-I~inG~~ 945 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGD-IRISGFP 945 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccce-EEECCcc
Confidence 5899999998742 12689999999999999999999999999999999998763 4553 333
Q ss_pred ------cCeEEEEccCcccc-cccHHHHHccCC------CCChh----hHHHHHHHHhhHHHhhcCCCCCCccccCCC-C
Q 000746 702 ------RGTVAYVPQISWIF-NATLRKNILFGS------EFDPA----KYWKTVDVSALQHDLDLLPDRDLTEIGERG-V 763 (1303)
Q Consensus 702 ------~~~iayv~Q~p~l~-~~TireNI~~g~------~~~~~----~~~~vl~~~~l~~~i~~lp~g~~T~ige~G-~ 763 (1303)
++.++||+|++.++ +.||+||+.|+. ..+++ +.+++++..+|. +-.++.+|..+ .
T Consensus 946 ~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~-------~~~~~~vg~~~~~ 1018 (1470)
T PLN03140 946 KKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELD-------NLKDAIVGLPGVT 1018 (1470)
T ss_pred CChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCCh-------hHhCCccCCCCCC
Confidence 24589999998776 569999998752 12222 234445544443 23467777655 5
Q ss_pred CCchHHHHHHHHHHHHHH-----------------------HHHhHhc-CCCEEEEEecCCCc--ccccCEEEEEeC-CE
Q 000746 764 NISGGQKQRVSMARAVFN-----------------------SCIKEEL-RGKTRILVTNQLHF--LPHVDRIILVSE-GM 816 (1303)
Q Consensus 764 ~LSGGQkQRiaLARAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~--l~~aD~ii~l~~-G~ 816 (1303)
.||||||||++||||++. +.+++.. +|+|+|+++|+++. ...+|++++|++ |+
T Consensus 1019 ~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~ 1098 (1470)
T PLN03140 1019 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1098 (1470)
T ss_pred CcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCE
Confidence 799999999999999643 2233322 58999999999984 578999999986 89
Q ss_pred EEEecCHHH
Q 000746 817 IKEEGSFEE 825 (1303)
Q Consensus 817 i~~~g~~~~ 825 (1303)
++..|+..+
T Consensus 1099 ~v~~G~~~~ 1107 (1470)
T PLN03140 1099 VIYSGPLGR 1107 (1470)
T ss_pred EEEECCccc
Confidence 999998754
No 388
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.83 E-value=3.1e-20 Score=194.20 Aligned_cols=124 Identities=30% Similarity=0.455 Sum_probs=91.0
Q ss_pred CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcC--------eEEEEccCcccccccHHHHHcc
Q 000746 654 SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG--------TVAYVPQISWIFNATLRKNILF 725 (1303)
Q Consensus 654 ~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~--------~iayv~Q~p~l~~~TireNI~~ 725 (1303)
.++|+|+||++++|++++|+||||||||||++++++ .+|. +.+.+ .++|++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~-v~~~~~~~~~~~~~~~~~~q--------------- 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGK-ARLISFLPKFSRNKLIFIDQ--------------- 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----cCCc-EEECCcccccccccEEEEhH---------------
Confidence 368999999999999999999999999999999974 3553 32222 2455554
Q ss_pred CCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHHH--H--------------------
Q 000746 726 GSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFNS--C-------------------- 783 (1303)
Q Consensus 726 g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~~--~-------------------- 783 (1303)
.++++..++ +.. ....+..+||||||||++||||++.+ .
T Consensus 68 ---------~~~l~~~~L---------~~~-~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l 128 (176)
T cd03238 68 ---------LQFLIDVGL---------GYL-TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQL 128 (176)
T ss_pred ---------HHHHHHcCC---------Ccc-ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHH
Confidence 122322222 111 24566789999999999999997654 1
Q ss_pred ---HhHhc-CCCEEEEEecCCCcccccCEEEEEeCCE
Q 000746 784 ---IKEEL-RGKTRILVTNQLHFLPHVDRIILVSEGM 816 (1303)
Q Consensus 784 ---i~~~~-~~~TvilvtH~~~~l~~aD~ii~l~~G~ 816 (1303)
+++.. .++|+|+|||+++.+..||++++|++|+
T Consensus 129 ~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~ 165 (176)
T cd03238 129 LEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGS 165 (176)
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCC
Confidence 22322 5899999999999998999999997644
No 389
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=1.6e-19 Score=187.64 Aligned_cols=118 Identities=38% Similarity=0.709 Sum_probs=97.7
Q ss_pred EEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcC-------------eEEEEc
Q 000746 643 IKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG-------------TVAYVP 709 (1303)
Q Consensus 643 ~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~-------------~iayv~ 709 (1303)
++|+++.|++. ++++++|+++++|+.++|+|+||||||||+++|.|+++|.+| .+.+++ .++|++
T Consensus 2 ~~~~~~~~~~~-~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G-~i~~~~~~~~~~~~~~~~~~i~~~~ 79 (157)
T cd00267 2 IENLSFRYGGR-TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSG-EILIDGKDIAKLPLEELRRRIGYVP 79 (157)
T ss_pred eEEEEEEeCCe-eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcc-EEEECCEEcccCCHHHHHhceEEEe
Confidence 68899999754 699999999999999999999999999999999999999876 444433 356666
Q ss_pred cCcccccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH--------
Q 000746 710 QISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN-------- 781 (1303)
Q Consensus 710 Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~-------- 781 (1303)
| ||||||||++||||+..
T Consensus 80 q------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilD 105 (157)
T cd00267 80 Q------------------------------------------------------LSGGQRQRVALARALLLNPDLLLLD 105 (157)
T ss_pred e------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 5 99999999999999542
Q ss_pred ---------------HHHhHhc-CCCEEEEEecCCCcccc-cCEEEEEeCCE
Q 000746 782 ---------------SCIKEEL-RGKTRILVTNQLHFLPH-VDRIILVSEGM 816 (1303)
Q Consensus 782 ---------------~~i~~~~-~~~TvilvtH~~~~l~~-aD~ii~l~~G~ 816 (1303)
+.+.+.. +++|++++||+++.++. +|+++++++|+
T Consensus 106 Ep~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 106 EPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 2333332 35899999999999887 59999999874
No 390
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.81 E-value=1e-19 Score=188.82 Aligned_cols=181 Identities=23% Similarity=0.415 Sum_probs=145.1
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcC---------eEEEEcc
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG---------TVAYVPQ 710 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~---------~iayv~Q 710 (1303)
.+++++++.+|++ ..+++|+||++++|++.+++|+||+||||.+++|+|+++|++| .+.+++ +|||.|.
T Consensus 2 ~L~ie~vtK~Fg~-k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G-~I~~~g~~~~~~~~~rIGyLPE 79 (300)
T COG4152 2 ALEIEGVTKSFGD-KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEG-EITWNGGPLSQEIKNRIGYLPE 79 (300)
T ss_pred ceEEecchhccCc-eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCc-eEEEcCcchhhhhhhhcccChh
Confidence 4789999999975 4699999999999999999999999999999999999999997 455554 8999999
Q ss_pred Ccccc-cccHHHHHccCCC---CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH------
Q 000746 711 ISWIF-NATLRKNILFGSE---FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF------ 780 (1303)
Q Consensus 711 ~p~l~-~~TireNI~~g~~---~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~------ 780 (1303)
+--|+ ..|+.|-+.|-.. ++.++.++- +...++.+.-... -.++-..||-|.+|+|.+--|++
T Consensus 80 ERGLy~k~tv~dql~yla~LkGm~~~e~~~~-----~~~wLer~~i~~~--~~~kIk~LSKGnqQKIQfisaviHePeLl 152 (300)
T COG4152 80 ERGLYPKMTVEDQLKYLAELKGMPKAEIQKK-----LQAWLERLEIVGK--KTKKIKELSKGNQQKIQFISAVIHEPELL 152 (300)
T ss_pred hhccCccCcHHHHHHHHHHhcCCcHHHHHHH-----HHHHHHhcccccc--ccchHHHhhhhhhHHHHHHHHHhcCCCEE
Confidence 99988 6799999997532 445444432 3345555542221 13455689999999999999953
Q ss_pred -----------------HHHHhHh-cCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 781 -----------------NSCIKEE-LRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 781 -----------------~~~i~~~-~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
++.+.+. -+|+|+|+.||+++.+. .||+++.|++|+.+-+|+.++..+.
T Consensus 153 ILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~ 220 (300)
T COG4152 153 ILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRS 220 (300)
T ss_pred EecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHh
Confidence 3334333 37999999999999986 4999999999999999999988764
No 391
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.81 E-value=4.8e-20 Score=184.67 Aligned_cols=178 Identities=20% Similarity=0.334 Sum_probs=140.2
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc---------------C
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR---------------G 703 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~---------------~ 703 (1303)
..++++|++.++++- .+|+|+||++.+||+-+|+||||+||||++.+|.|-.+|++|... .+ .
T Consensus 4 ~iL~~~~vsVsF~GF-~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~-f~g~~dl~~~~e~~IAr~ 81 (249)
T COG4674 4 IILYLDGVSVSFGGF-KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVL-FDGDTDLTKLPEHRIARA 81 (249)
T ss_pred ceEEEeceEEEEcce-eeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEE-EcCchhhccCCHHHHHHh
Confidence 357899999999754 589999999999999999999999999999999999999987543 32 2
Q ss_pred eEEEEccCcccc-cccHHHHHccCCCCCh---------------hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCch
Q 000746 704 TVAYVPQISWIF-NATLRKNILFGSEFDP---------------AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISG 767 (1303)
Q Consensus 704 ~iayv~Q~p~l~-~~TireNI~~g~~~~~---------------~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSG 767 (1303)
.|+-=+|.|.+| +-||+||+-.....++ +++++++...+|.+. ......+||.
T Consensus 82 GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~-----------~~~~A~~LSH 150 (249)
T COG4674 82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDE-----------RDRLAALLSH 150 (249)
T ss_pred ccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchh-----------hhhhhhhhcc
Confidence 488889999999 5699999976533221 234444444443321 2233467999
Q ss_pred HHHHHHHHHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCH
Q 000746 768 GQKQRVSMARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSF 823 (1303)
Q Consensus 768 GQkQRiaLARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~ 823 (1303)
||||++-|+--+.+ +.++...+++++++|-|++.+++ .||+|-||.+|++..+|+.
T Consensus 151 GqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsl 230 (249)
T COG4674 151 GQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSL 230 (249)
T ss_pred chhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccH
Confidence 99999999977432 34555667899999999999986 4999999999999999999
Q ss_pred HHHHhc
Q 000746 824 EELSKH 829 (1303)
Q Consensus 824 ~~l~~~ 829 (1303)
+++.++
T Consensus 231 d~v~~d 236 (249)
T COG4674 231 DEVQND 236 (249)
T ss_pred HHhhcC
Confidence 988654
No 392
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.80 E-value=3.1e-17 Score=185.59 Aligned_cols=264 Identities=17% Similarity=0.232 Sum_probs=196.8
Q ss_pred HHHHHHHHHhhhhHHHhhhcccccCCCCC--chHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000746 928 CYLSTEVLRISSSTWLSFWTDQSTSKNYN--PGFYIAI--YTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILR 1003 (1303)
Q Consensus 928 ~~~~~~~~~~~~~~~l~~w~~~~~~~~~~--~~~~~~i--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~ 1003 (1303)
+.++..+.....|+.++.+.|........ ...+... ++++.++...+.....+...+.+.+...++|+++++|+++
T Consensus 7 ~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 86 (275)
T PF00664_consen 7 LSILSGLLSLLFPLLLGQIIDSLSSGNSDNNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRLFEKLLR 86 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556677777777753322222 1112211 2222233333444444556788999999999999999999
Q ss_pred CcccccccCCcchhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1004 APMLFFHTNPIGRVINRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIVSTISLWAIMPLLILFYAAYLYYQSTAR 1083 (1303)
Q Consensus 1004 ~p~~fFd~~~~G~ilnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~~~~~~~~~~pl~~~~~~i~~~~~~~~r 1083 (1303)
.|.+||+++++|+++||+++|++.+++.+...+..++..+...++.++++...+|.+.++.+...+++.++..++.+..+
T Consensus 87 ~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~ 166 (275)
T PF00664_consen 87 LPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLISFIFSKKIR 166 (275)
T ss_dssp SHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhhhhhccccc
Confidence 99999999999999999999999999999988888888888888888888888998888888777777778888888888
Q ss_pred HHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 1084 EVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMIWLIATFA 1163 (1303)
Q Consensus 1084 ~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~ 1163 (1303)
+..+...+..++..+.+.|.++|+++||+|+.|+++.+++.+..++..+........+.+.....+.+..+....+..++
T Consensus 167 ~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 246 (275)
T PF00664_consen 167 KLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSIVLILIFG 246 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888899999999999999999999999999999999999988888888877788888777776665444433333
Q ss_pred HHccCcccccccchhHHHHHHHHHHHHHHH
Q 000746 1164 VMQNGRAENQVAFASTMGLLLSYTLNITNL 1193 (1303)
Q Consensus 1164 v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~ 1193 (1303)
... ....+....|.+..++.+...+.+|
T Consensus 247 ~~~--~~~~g~~s~g~~~~~~~~~~~~~~p 274 (275)
T PF00664_consen 247 AYL--SVINGQISIGTLVAFLSLSSQLINP 274 (275)
T ss_dssp HHH---HCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHH--HHHcCCcCHHHHHHHHHHHHHHHhh
Confidence 332 0112234467777777777666655
No 393
>PRK13409 putative ATPase RIL; Provisional
Probab=99.80 E-value=8.9e-20 Score=226.31 Aligned_cols=158 Identities=24% Similarity=0.295 Sum_probs=118.5
Q ss_pred EeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceE----------EEc-----------
Q 000746 644 KNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASV----------VIR----------- 702 (1303)
Q Consensus 644 ~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~----------~~~----------- 702 (1303)
++++.+|+.+..+|++++ .+++|++++|+||||||||||+++|+|+++|++|... .++
T Consensus 77 ~~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~ 155 (590)
T PRK13409 77 EEPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL 155 (590)
T ss_pred cCceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence 358899976557999999 9999999999999999999999999999999988642 011
Q ss_pred ----Ce----EEEEccCcccccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHH
Q 000746 703 ----GT----VAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVS 774 (1303)
Q Consensus 703 ----~~----iayv~Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRia 774 (1303)
.. +.|++|.|.++.+|++||+.... ..++..++++..++.+. ....-.+||||||||++
T Consensus 156 ~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~--~~~~~~~~l~~l~l~~~-----------~~~~~~~LSgGe~qrv~ 222 (590)
T PRK13409 156 YNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD--ERGKLDEVVERLGLENI-----------LDRDISELSGGELQRVA 222 (590)
T ss_pred hccCcceeecccchhhhhhhhcchHHHHHHhhh--HHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHH
Confidence 12 34556677888899999997421 12345555555554322 12334579999999999
Q ss_pred HHHHHHH-----------------------HHHhHhcCCCEEEEEecCCCcccc-cCEEEEEeCC
Q 000746 775 MARAVFN-----------------------SCIKEELRGKTRILVTNQLHFLPH-VDRIILVSEG 815 (1303)
Q Consensus 775 LARAl~~-----------------------~~i~~~~~~~TvilvtH~~~~l~~-aD~ii~l~~G 815 (1303)
||||+.. +.+++..+++|+|+|||+++.+.. +|+|++|++|
T Consensus 223 ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 223 IAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999642 234443348999999999998754 8999999763
No 394
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.80 E-value=1.1e-18 Score=210.53 Aligned_cols=180 Identities=24% Similarity=0.357 Sum_probs=140.8
Q ss_pred CCCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcC--eEEEEccCc-c
Q 000746 637 ELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG--TVAYVPQIS-W 713 (1303)
Q Consensus 637 ~~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~--~iayv~Q~p-~ 713 (1303)
....++++|++++|+++.++++++||.|.+|++++|+||||+|||||++.|+|...|.+|. +.+.. ++||.+|+- .
T Consensus 318 g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~-v~~g~~v~igyf~Q~~~~ 396 (530)
T COG0488 318 GKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGT-VKVGETVKIGYFDQHRDE 396 (530)
T ss_pred CCeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCce-EEeCCceEEEEEEehhhh
Confidence 3457899999999977678999999999999999999999999999999999999999874 44443 599999987 3
Q ss_pred c-ccccHHHHHccCCC-CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH----------
Q 000746 714 I-FNATLRKNILFGSE-FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN---------- 781 (1303)
Q Consensus 714 l-~~~TireNI~~g~~-~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~---------- 781 (1303)
+ -+.|+-|++.-+.+ ..+..+...+....+..+-. ......||||||.|+.||+.++.
T Consensus 397 l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~----------~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEP 466 (530)
T COG0488 397 LDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQ----------EKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEP 466 (530)
T ss_pred cCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHH----------hCchhhcCHhHHHHHHHHHHhccCCCEEEEcCC
Confidence 3 45699999986553 33566666666655543321 23445799999999999999542
Q ss_pred ---------HHHhHhcC--CCEEEEEecCCCcccc-cCEEEEEeCCEEEEe-cCHHHHHh
Q 000746 782 ---------SCIKEELR--GKTRILVTNQLHFLPH-VDRIILVSEGMIKEE-GSFEELSK 828 (1303)
Q Consensus 782 ---------~~i~~~~~--~~TvilvtH~~~~l~~-aD~ii~l~~G~i~~~-g~~~~l~~ 828 (1303)
+++.+.+. .-|+|+|||+.+++.. |++|+.+++ ++... |+|++..+
T Consensus 467 TNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~ 525 (530)
T COG0488 467 TNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLE 525 (530)
T ss_pred CccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHH
Confidence 23444442 5699999999999976 899999998 77666 88887654
No 395
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.80 E-value=4.2e-19 Score=195.74 Aligned_cols=183 Identities=26% Similarity=0.422 Sum_probs=131.9
Q ss_pred CcEEEEeeEEEeCCC---CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCC-----CCceEE----------
Q 000746 639 PAVSIKNGNFSWDSK---SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPL-----KDASVV---------- 700 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~---~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~-----~g~~~~---------- 700 (1303)
+.++++|++..|... ..++++|||+|++||.+++||.||||||--.++++|+++.. +| .+.
T Consensus 5 ~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg-~i~f~G~dll~~s 83 (534)
T COG4172 5 PLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSG-SILFDGEDLLAAS 83 (534)
T ss_pred cceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccc-eeEEcChhhhcCC
Confidence 457899999888532 26899999999999999999999999999999999999741 22 222
Q ss_pred ------Ec-CeEEEEccCccc-cc--ccH----HHHHccCCCCC----hhhHHHHHHHHhhHHHhhcCCCCCCccccCCC
Q 000746 701 ------IR-GTVAYVPQISWI-FN--ATL----RKNILFGSEFD----PAKYWKTVDVSALQHDLDLLPDRDLTEIGERG 762 (1303)
Q Consensus 701 ------~~-~~iayv~Q~p~l-~~--~Ti----reNI~~g~~~~----~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G 762 (1303)
+| ++|+.++|+|.- .| -|| .|-|...+..+ +++..+.++.+++.+- .-.+..-.
T Consensus 84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p--------~~rl~~yP 155 (534)
T COG4172 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEP--------EKRLDAYP 155 (534)
T ss_pred HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCch--------hhhhhhCC
Confidence 22 379999999963 22 244 44444444333 2333344444443221 11234456
Q ss_pred CCCchHHHHHHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCccc-ccCEEEEEeCCE
Q 000746 763 VNISGGQKQRVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLP-HVDRIILVSEGM 816 (1303)
Q Consensus 763 ~~LSGGQkQRiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~-~aD~ii~l~~G~ 816 (1303)
..|||||||||-||-|+.. +.+++.. .|..+++|||++..++ .||+|.||.+|+
T Consensus 156 HeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ 235 (534)
T COG4172 156 HELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGE 235 (534)
T ss_pred cccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccE
Confidence 7899999999999999532 1122221 4899999999999986 499999999999
Q ss_pred EEEecCHHHHHhcc
Q 000746 817 IKEEGSFEELSKHG 830 (1303)
Q Consensus 817 i~~~g~~~~l~~~~ 830 (1303)
++|+|+.+++..++
T Consensus 236 ivE~~~t~~lF~~P 249 (534)
T COG4172 236 IVETGTTETLFAAP 249 (534)
T ss_pred EeecCcHHHHhhCC
Confidence 99999999998654
No 396
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.79 E-value=2.7e-16 Score=177.86 Aligned_cols=268 Identities=25% Similarity=0.298 Sum_probs=193.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 330 WLGGLFKIGNDLSQFVGPVLLNHLLQSMQRGDPA--WIGYIYAFLIFVGVSFGVLTEAQYFQNVWRVGFRLRSTLVAAIF 407 (1303)
Q Consensus 330 ~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~L~~~i~ 407 (1303)
+.+.++.++..++.++.|++++.+++.+.++... ...+.+++++++...+.......+.+...+.+.+++..++..++
T Consensus 2 ~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (275)
T PF00664_consen 2 FLAILLSILSGLLSLLFPLLLGQIIDSLSSGNSDNNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRLF 81 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888899999999999997665432 22333333322222222233333333356888999999999999
Q ss_pred HHHHcCCcccccCCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000746 408 RKTLRLTHEARKGFPSGKVTNMITTDANALQQISQQ-LHGLWSAPFRITLSMVLLYQQLGVASLLGSLMLVLMVPLQTFI 486 (1303)
Q Consensus 408 ~k~l~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~-~~~~~~~~~~i~~~~~~l~~~lg~~~l~~~~~~~~~~~~~~~~ 486 (1303)
+|.++.+....++.++|+++|++++|++.+++.... +..+......++.++.+++..-+..+++.+++.++..++...+
T Consensus 82 ~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~ 161 (275)
T PF00664_consen 82 EKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLISFIF 161 (275)
T ss_dssp HHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhhhhh
Confidence 999999999888899999999999999999987654 3444444444444444444333333344444445555666778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HhH
Q 000746 487 ISKMRKLTKEGLQWTDRRVSLTNEILAAMDTVKCYAWEKSFQSRVQSIRDDELSWFRKAQFLSAFNSFILNSIPV--VVT 564 (1303)
Q Consensus 487 ~~~~~~~~~~~~~~~~~r~~~~~e~l~gi~~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~--~~~ 564 (1303)
.++.++..++..+..+++.+.+.|.++|+++||.|++|+.+.+++++..++..+...+......+.......... .+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (275)
T PF00664_consen 162 SKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSIVL 241 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999999999999998888777666665555554444333322 244
Q ss_pred Hhhhhhhh-hhCCCCCHHHHHHHHHHHHHHHHHH
Q 000746 565 VVSFGTFT-LLGGDLTPARAFTSLSLFAVLRFPL 597 (1303)
Q Consensus 565 ~~~f~~~~-~~~~~l~~~~~f~~l~l~~~l~~pl 597 (1303)
++.+|++. ...|.+++|.+++.+.++..+..|+
T Consensus 242 ~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 242 ILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 56677887 7889999999999999999998885
No 397
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.79 E-value=5.6e-20 Score=186.51 Aligned_cols=111 Identities=38% Similarity=0.636 Sum_probs=94.5
Q ss_pred cceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEE-------------cCeEEEEccCcccccc-cHHHH
Q 000746 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVI-------------RGTVAYVPQISWIFNA-TLRKN 722 (1303)
Q Consensus 657 L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~-------------~~~iayv~Q~p~l~~~-TireN 722 (1303)
|+|+|+++++|++++|+|+||||||||+++|.|.++|.+|. +.+ +..++|++|++.++++ |++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~-i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~ 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGS-ILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEE-EEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence 68999999999999999999999999999999999998864 433 3469999999999976 59999
Q ss_pred HccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH
Q 000746 723 ILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN 781 (1303)
Q Consensus 723 I~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~ 781 (1303)
.++++++++++.+++.+ ..++.++.+...||||||||++||||++.
T Consensus 80 ------~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~ 125 (137)
T PF00005_consen 80 ------ESDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLK 125 (137)
T ss_dssp ------HHHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHT
T ss_pred ------ccccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHc
Confidence 34567777777776654 34577888889999999999999999875
No 398
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=2.1e-18 Score=178.86 Aligned_cols=179 Identities=19% Similarity=0.283 Sum_probs=132.3
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcC--CCCCCCceEE-------------EcCe
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGE--LPPLKDASVV-------------IRGT 704 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~--~~~~~g~~~~-------------~~~~ 704 (1303)
.++++|+..+-++++.+|+++||+|++||+.+|.||||||||||.++|+|. |++++|.+.. .+..
T Consensus 3 ~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~G 82 (251)
T COG0396 3 MLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAG 82 (251)
T ss_pred eeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcC
Confidence 478999998887545799999999999999999999999999999999996 4667764321 1345
Q ss_pred EEEEccCcccccc-cHHHHHccCC----CC---C---hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHH
Q 000746 705 VAYVPQISWIFNA-TLRKNILFGS----EF---D---PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRV 773 (1303)
Q Consensus 705 iayv~Q~p~l~~~-TireNI~~g~----~~---~---~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRi 773 (1303)
|....|.|.=+.| |+.+-+.-+. .. . .++.++.++..++++++ .+..|+ ..+|||+|.|.
T Consensus 83 ifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~------l~R~vN---~GFSGGEkKR~ 153 (251)
T COG0396 83 IFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEF------LERYVN---EGFSGGEKKRN 153 (251)
T ss_pred CEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHH------hhcccC---CCcCcchHHHH
Confidence 8999999987776 8888776431 11 1 23334444444444422 122232 34999999999
Q ss_pred HHHHHHH-----------------------HHHHhHhc-CCCEEEEEecCCCccccc--CEEEEEeCCEEEEecCHHHHH
Q 000746 774 SMARAVF-----------------------NSCIKEEL-RGKTRILVTNQLHFLPHV--DRIILVSEGMIKEEGSFEELS 827 (1303)
Q Consensus 774 aLARAl~-----------------------~~~i~~~~-~~~TvilvtH~~~~l~~a--D~ii~l~~G~i~~~g~~~~l~ 827 (1303)
-|+.+++ .+.++... +++++++|||.-..+.+. |++.+|-+|+|+..|.+ ++.
T Consensus 154 EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-el~ 232 (251)
T COG0396 154 EILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-ELA 232 (251)
T ss_pred HHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-HHH
Confidence 9999843 12233333 589999999999888775 99999999999999999 665
Q ss_pred h
Q 000746 828 K 828 (1303)
Q Consensus 828 ~ 828 (1303)
+
T Consensus 233 ~ 233 (251)
T COG0396 233 E 233 (251)
T ss_pred H
Confidence 3
No 399
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.77 E-value=1.9e-18 Score=169.44 Aligned_cols=183 Identities=23% Similarity=0.416 Sum_probs=132.3
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------------
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------------ 700 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------------ 700 (1303)
+.+++++++..|.+. .--+|+||++.|||..+|||+||||||||+++|.+-+.|+.|.+..
T Consensus 5 PLL~V~~lsk~Yg~~-~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeR 83 (258)
T COG4107 5 PLLSVSGLSKLYGPG-KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAER 83 (258)
T ss_pred cceeehhhhhhhCCC-cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHH
Confidence 467899999999765 4679999999999999999999999999999999999999985432
Q ss_pred ---EcCeEEEEccCcc--c-ccc----cHHHHHc-cCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHH
Q 000746 701 ---IRGTVAYVPQISW--I-FNA----TLRKNIL-FGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQ 769 (1303)
Q Consensus 701 ---~~~~iayv~Q~p~--l-~~~----TireNI~-~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQ 769 (1303)
.|-.-++|-|+|- | +.- .|-|-+. -| ...|-+ +++.+ .++++..+ =+.+.+.+....+|||.
T Consensus 84 R~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G----~RHYG~-iR~~a-~~WL~~VE-I~~~RiDD~PrtFSGGM 156 (258)
T COG4107 84 RRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIG----ARHYGN-IRAEA-QDWLEEVE-IDLDRIDDLPRTFSGGM 156 (258)
T ss_pred HHHhhhccceeecCccccceeeeccCCccchhHHhhh----hhhhhh-HHHHH-HHHHHhcc-cCcccccCcccccchHH
Confidence 1234799999984 1 111 2222221 11 111221 22222 23333332 24566778889999999
Q ss_pred HHHHHHHHHHHH-----------------------HHHhHhc--CCCEEEEEecCCCcccc-cCEEEEEeCCEEEEecCH
Q 000746 770 KQRVSMARAVFN-----------------------SCIKEEL--RGKTRILVTNQLHFLPH-VDRIILVSEGMIKEEGSF 823 (1303)
Q Consensus 770 kQRiaLARAl~~-----------------------~~i~~~~--~~~TvilvtH~~~~l~~-aD~ii~l~~G~i~~~g~~ 823 (1303)
+||+.|||-++. +++++.. -+-.+++|||++...+. +|+.++|++|+++|+|-.
T Consensus 157 qQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLT 236 (258)
T COG4107 157 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLT 236 (258)
T ss_pred HHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEeccccc
Confidence 999999999531 2333332 26799999999998775 899999999999999988
Q ss_pred HHHHhc
Q 000746 824 EELSKH 829 (1303)
Q Consensus 824 ~~l~~~ 829 (1303)
+..+..
T Consensus 237 DrvLDD 242 (258)
T COG4107 237 DRVLDD 242 (258)
T ss_pred cccccC
Confidence 877654
No 400
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.75 E-value=7.9e-18 Score=209.28 Aligned_cols=181 Identities=28% Similarity=0.418 Sum_probs=140.5
Q ss_pred cEEEEeeEEEeCCC----CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCC---CCCceEEEc----------
Q 000746 640 AVSIKNGNFSWDSK----SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPP---LKDASVVIR---------- 702 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~----~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~---~~g~~~~~~---------- 702 (1303)
.++++|++..-+.+ +.+|+|||.++++||+.||.||||||||||+++|+|-.+. .+ |.+.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~-G~ilvNG~~~~~~~~~ 103 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLS-GEILLNGRPRDSRSFR 103 (613)
T ss_pred eeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcce-EEEEECCccCchhhhh
Confidence 57888888876543 4799999999999999999999999999999999999874 33 355544
Q ss_pred CeEEEEccCcccc-cccHHHHHccCCC------CCh----hhHHHHHHHHhhHHHhhcCCCCCCccccCCC-CCCchHHH
Q 000746 703 GTVAYVPQISWIF-NATLRKNILFGSE------FDP----AKYWKTVDVSALQHDLDLLPDRDLTEIGERG-VNISGGQK 770 (1303)
Q Consensus 703 ~~iayv~Q~p~l~-~~TireNI~~g~~------~~~----~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G-~~LSGGQk 770 (1303)
+..|||+||..++ +.||+|++.|... .+. ++++++++.-+|. +-.||.||..+ ..+|||||
T Consensus 104 ~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~-------~~~~t~ig~~~~rgiSGGEr 176 (613)
T KOG0061|consen 104 KISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLE-------KCADTLIGNPGIRGLSGGER 176 (613)
T ss_pred heeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCh-------hhccceecCCCCCccccchh
Confidence 4699999999877 6799999987532 232 2344444444443 33578887544 57999999
Q ss_pred HHHHHHHHHHHH-----------------------HHhHh-cCCCEEEEEecCCCc--ccccCEEEEEeCCEEEEecCHH
Q 000746 771 QRVSMARAVFNS-----------------------CIKEE-LRGKTRILVTNQLHF--LPHVDRIILVSEGMIKEEGSFE 824 (1303)
Q Consensus 771 QRiaLARAl~~~-----------------------~i~~~-~~~~TvilvtH~~~~--l~~aD~ii~l~~G~i~~~g~~~ 824 (1303)
+|+++|--++.+ .+++. .+|||||+.=|+++. ....|++++|.+|+++.+|+++
T Consensus 177 kRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~ 256 (613)
T KOG0061|consen 177 KRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPR 256 (613)
T ss_pred hHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHH
Confidence 999999986431 23332 269999999999986 6789999999999999999998
Q ss_pred HHHh
Q 000746 825 ELSK 828 (1303)
Q Consensus 825 ~l~~ 828 (1303)
++.+
T Consensus 257 ~~~~ 260 (613)
T KOG0061|consen 257 ELLE 260 (613)
T ss_pred HHHH
Confidence 8753
No 401
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=2.9e-18 Score=172.16 Aligned_cols=153 Identities=23% Similarity=0.326 Sum_probs=115.5
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc-----------CeEEEEc
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR-----------GTVAYVP 709 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~-----------~~iayv~ 709 (1303)
++.+|++...+. ..++.++||++.+||.+.|.|||||||||||++|.|+++|.+|.+.+-. ..+-|..
T Consensus 3 L~a~~L~~~R~e-~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLG 81 (209)
T COG4133 3 LEAENLSCERGE-RTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLG 81 (209)
T ss_pred chhhhhhhccCc-ceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhh
Confidence 345666666543 3789999999999999999999999999999999999999998544321 2355666
Q ss_pred cCcccc-cccHHHHHccCCC----CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH----
Q 000746 710 QISWIF-NATLRKNILFGSE----FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF---- 780 (1303)
Q Consensus 710 Q~p~l~-~~TireNI~~g~~----~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~---- 780 (1303)
.+|-+= .-|+.||+.|.++ -+++..+++++..+|. +++.+|- .+||-|||.|+||||-++
T Consensus 82 H~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~-g~~dlp~----------~~LSAGQqRRvAlArL~ls~~p 150 (209)
T COG4133 82 HQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLA-GLEDLPV----------GQLSAGQQRRVALARLWLSPAP 150 (209)
T ss_pred ccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcc-cccccch----------hhcchhHHHHHHHHHHHcCCCC
Confidence 666665 5699999998765 3467889999998885 4444553 359999999999999832
Q ss_pred -------------------HHHHhHh-cCCCEEEEEecCCCcccc
Q 000746 781 -------------------NSCIKEE-LRGKTRILVTNQLHFLPH 805 (1303)
Q Consensus 781 -------------------~~~i~~~-~~~~TvilvtH~~~~l~~ 805 (1303)
...+... -+|-.||+.||+.-.+..
T Consensus 151 LWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~~ 195 (209)
T COG4133 151 LWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIAS 195 (209)
T ss_pred ceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCCc
Confidence 2222222 368899999999866543
No 402
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.74 E-value=7.2e-18 Score=185.55 Aligned_cols=159 Identities=24% Similarity=0.283 Sum_probs=94.7
Q ss_pred CCCccceeeeEecCCcEEEEEcCCCCChHHHH-HHHhc--------------------CCCCCCCceEEEcC-eEEEEcc
Q 000746 653 KSPTLSNINLDIPVGSLVAIVGGTGEGKTSLV-SAMLG--------------------ELPPLKDASVVIRG-TVAYVPQ 710 (1303)
Q Consensus 653 ~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl-~~llg--------------------~~~~~~g~~~~~~~-~iayv~Q 710 (1303)
+.++|+|+||+|++||+++|+|+||||||||+ ..+.. .+.|..+ ..++ ..++..|
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 83 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVD---SIEGLSPAIAID 83 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCccccc---cccCCCceEEec
Confidence 34799999999999999999999999999996 22221 0011100 0111 2333444
Q ss_pred Ccc-ccc--cc---HHHHHccCC-CCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHHH-
Q 000746 711 ISW-IFN--AT---LRKNILFGS-EFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFNS- 782 (1303)
Q Consensus 711 ~p~-l~~--~T---ireNI~~g~-~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~~- 782 (1303)
++. ..+ .+ +.+...+.. -+..+...+. .+.++.+.-.+ ........+||||||||++||||+..+
T Consensus 84 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~l~~-~~~~~~~~~LSgG~~qrv~laral~~~p 156 (226)
T cd03270 84 QKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRER------LGFLVDVGLGY-LTLSRSAPTLSGGEAQRIRLATQIGSGL 156 (226)
T ss_pred CCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHH------HHHHHHCCCCc-ccccCccCcCCHHHHHHHHHHHHHHhCC
Confidence 432 111 12 222211100 0111111111 11122221111 124556778999999999999997532
Q ss_pred ------------------------HHhHh-cCCCEEEEEecCCCcccccCEEEEE------eCCEEEEec
Q 000746 783 ------------------------CIKEE-LRGKTRILVTNQLHFLPHVDRIILV------SEGMIKEEG 821 (1303)
Q Consensus 783 ------------------------~i~~~-~~~~TvilvtH~~~~l~~aD~ii~l------~~G~i~~~g 821 (1303)
.+.+. .++.|+|+|||+++.+..||++++| ++|+|+++|
T Consensus 157 ~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 157 TGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 12222 2578999999999998899999999 999999986
No 403
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.73 E-value=6.8e-15 Score=176.00 Aligned_cols=360 Identities=14% Similarity=0.145 Sum_probs=207.3
Q ss_pred HHhhhhHHHhhhcccccC---CCCCchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccc
Q 000746 935 LRISSSTWLSFWTDQSTS---KNYNPGF--YIAIYTILAFGQVTVTLLNSYWLIISSLRAAKRLHDSMLNSILRAPMLFF 1009 (1303)
Q Consensus 935 ~~~~~~~~l~~w~~~~~~---~~~~~~~--~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fF 1009 (1303)
+......|+..|..+..+ ......+ -+.+|..++.+.......+.|+......+.-.-|-+.+.++-+.-. .||
T Consensus 58 ~~v~~~v~~~~w~~~~~~aL~~~d~~~f~~~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~-~~y 136 (604)
T COG4178 58 LSVRGQVLLNDWNGPFYNALARRDLAAFWQQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPR-RYY 136 (604)
T ss_pred HHhheeeeeHhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chH
Confidence 334455666666543211 0011122 2456666666666666666777667777777777777777777766 555
Q ss_pred ccCCcchh------HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHH
Q 000746 1010 HTNPIGRV------INRFSRDLGDIDRNVASFVNMFMNQLWQLLSTFVLIGIV---------------STISLWAIMPLL 1068 (1303)
Q Consensus 1010 d~~~~G~i------lnR~s~D~~~vd~~l~~~~~~~~~~~~~~i~~~v~i~~~---------------~~~~~~~~~pl~ 1068 (1303)
.-...|.+ =.|+.+|+...-+........++..+++++...+++.-. ..++.++++...
T Consensus 137 ~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya 216 (604)
T COG4178 137 RLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYA 216 (604)
T ss_pred HHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHH
Confidence 54444422 268889987766554455555555555544433333211 122223322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 000746 1069 ILFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRL 1148 (1303)
Q Consensus 1069 ~~~~~i~~~~~~~~r~l~r~~~~~~s~l~s~~~E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l 1148 (1303)
+...++...+.|....+.-......+.......-.-++...|-.|+-|+.+.++..+..+...+........+.+++...
T Consensus 217 ~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~ 296 (604)
T COG4178 217 ISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQ 296 (604)
T ss_pred HHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 22222222333332222222222223333344445556677888888887777776666555444333333333333322
Q ss_pred HHHHHHHH--HHHHHHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcC------
Q 000746 1149 ETLGGIMI--WLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDL------ 1220 (1303)
Q Consensus 1149 ~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~gl~l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~------ 1220 (1303)
...+-+.+ -+....-.+.. +....|.+........++...+++++..+..+.+-.+.+.|+.++.+.
T Consensus 297 ~gy~~~s~v~P~li~ap~~f~-----g~i~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~ 371 (604)
T COG4178 297 LGYGWLSVVLPILIAAPRYFS-----GQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQM 371 (604)
T ss_pred hhhhHHHHHHHHHhccHhhhc-----CcChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 22221111 11111111111 122345566666667788888999999999999999999999998632
Q ss_pred CCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCe
Q 000746 1221 PSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGE 1300 (1303)
Q Consensus 1221 ~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~ 1300 (1303)
+++.+.... ..-...-..+..|+|+|++..-+++. +.|+++||+|+|||.+=|.|+||||||||+++|.++++--+|+
T Consensus 372 ~~~~~~~~~-~~~~~~~~~~~~i~~~nl~l~~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~ 449 (604)
T COG4178 372 DTEKPARTG-RRIDFDDNADHGITLENLSLRTPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGR 449 (604)
T ss_pred cccccCccc-ccccccccccceeEEeeeeEECCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCc
Confidence 222211100 00000000147899999999987654 7999999999999999999999999999999999999999998
Q ss_pred ee
Q 000746 1301 NI 1302 (1303)
Q Consensus 1301 I~ 1302 (1303)
|.
T Consensus 450 I~ 451 (604)
T COG4178 450 IS 451 (604)
T ss_pred ee
Confidence 74
No 404
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.72 E-value=2.6e-17 Score=182.51 Aligned_cols=159 Identities=23% Similarity=0.376 Sum_probs=103.0
Q ss_pred CccceeeeEecCCcEEEEEcCCCCChHHHHHHHh--------cCC--CCCCCceEE---EcCeEEEEccCc---------
Q 000746 655 PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAML--------GEL--PPLKDASVV---IRGTVAYVPQIS--------- 712 (1303)
Q Consensus 655 ~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~ll--------g~~--~~~~g~~~~---~~~~iayv~Q~p--------- 712 (1303)
.-|+|+|++||.|.+++|+|+||||||||++-++ +.. .|..+..+. .-..+-+|.|.|
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 4699999999999999999999999999998663 110 121111110 012244445544
Q ss_pred -------------------------------------c-cccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCC
Q 000746 713 -------------------------------------W-IFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRD 754 (1303)
Q Consensus 713 -------------------------------------~-l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~ 754 (1303)
. +.+.|+.||+.|.....+ ..++ .+.++.+ |+
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~--~~~~------~~~L~~v--gL 158 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPK--IARK------LQTLCDV--GL 158 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhh--HHHH------HHHHHHc--CC
Confidence 2 223455555444322110 0111 1112222 33
Q ss_pred Cc-cccCCCCCCchHHHHHHHHHHHHHHH--------------------------HHhHhc-CCCEEEEEecCCCccccc
Q 000746 755 LT-EIGERGVNISGGQKQRVSMARAVFNS--------------------------CIKEEL-RGKTRILVTNQLHFLPHV 806 (1303)
Q Consensus 755 ~T-~ige~G~~LSGGQkQRiaLARAl~~~--------------------------~i~~~~-~~~TvilvtH~~~~l~~a 806 (1303)
.. ..+....+||||||||++||||+..+ .+.+.. ++.|+|+|||+++.+..|
T Consensus 159 ~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~a 238 (261)
T cd03271 159 GYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCA 238 (261)
T ss_pred chhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhC
Confidence 33 35777889999999999999997652 122222 489999999999999999
Q ss_pred CEEEEE------eCCEEEEecCH
Q 000746 807 DRIILV------SEGMIKEEGSF 823 (1303)
Q Consensus 807 D~ii~l------~~G~i~~~g~~ 823 (1303)
|+++.| ++|+|+++|++
T Consensus 239 D~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 239 DWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CEEEEecCCcCCCCCEEEEeCCC
Confidence 999999 89999999974
No 405
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.72 E-value=5.2e-16 Score=195.24 Aligned_cols=172 Identities=25% Similarity=0.369 Sum_probs=127.4
Q ss_pred CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCC--ceEE----------EcCeEEEEccCcccc-cccHHH
Q 000746 655 PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKD--ASVV----------IRGTVAYVPQISWIF-NATLRK 721 (1303)
Q Consensus 655 ~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g--~~~~----------~~~~iayv~Q~p~l~-~~Tire 721 (1303)
.+|+|++.-+++|+.+.+.||.|||||||++++.|..+.... +.+. .++.++|++|+..-+ ..||||
T Consensus 129 ~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVre 208 (1391)
T KOG0065|consen 129 QILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRE 208 (1391)
T ss_pred eeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEee
Confidence 589999999999999999999999999999999998764321 1122 246799999988766 679999
Q ss_pred HHccCC-------CCC---hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCC-CCchHHHHHHHHHHHHH----------
Q 000746 722 NILFGS-------EFD---PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGV-NISGGQKQRVSMARAVF---------- 780 (1303)
Q Consensus 722 NI~~g~-------~~~---~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~-~LSGGQkQRiaLARAl~---------- 780 (1303)
-+.|.. .+| ..++.+.. ....-.+-.|.+..||.||++.. ..|||||.||++|-++.
T Consensus 209 TldFa~rck~~~~r~~~~~R~e~~~~~--~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 209 TLDFAARCKGPGSRYDEVSRREKLAAM--TDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred hhhHHHhccCCccccccccHHHHHHHH--HHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence 999853 133 22222111 11111123566788999998875 69999999999997731
Q ss_pred -------------HHHHhHh--cCCCEEEEEecCCCc--ccccCEEEEEeCCEEEEecCHHHHHh
Q 000746 781 -------------NSCIKEE--LRGKTRILVTNQLHF--LPHVDRIILVSEGMIKEEGSFEELSK 828 (1303)
Q Consensus 781 -------------~~~i~~~--~~~~TvilvtH~~~~--l~~aD~ii~l~~G~i~~~g~~~~l~~ 828 (1303)
-++++.. .-+.|.++.-|+.+. ....|+|++|.+|+++.+|+.++.+.
T Consensus 287 ~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 1334332 247888888888764 67899999999999999999998763
No 406
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.71 E-value=9.8e-18 Score=177.06 Aligned_cols=168 Identities=24% Similarity=0.400 Sum_probs=115.1
Q ss_pred CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcC------------eEEEEc----cCcccc--c
Q 000746 655 PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG------------TVAYVP----QISWIF--N 716 (1303)
Q Consensus 655 ~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~------------~iayv~----Q~p~l~--~ 716 (1303)
++.+||||+||+|++++.+|+||+||||++|+|.|.+.|++| .+.+.+ ++++|. |--|=. .
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G-~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSG-KVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCC-eEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhh
Confidence 578999999999999999999999999999999999999987 444433 233322 111211 1
Q ss_pred ccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH---------------
Q 000746 717 ATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN--------------- 781 (1303)
Q Consensus 717 ~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~--------------- 781 (1303)
.|++=|=.. .+.+++++.+-++ ...+.| +.+..+-..-..||=|||.|.-||-|+++
T Consensus 117 ds~~v~~~I-y~Ipd~~F~~r~~-----~l~eiL--dl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLD 188 (325)
T COG4586 117 DSLEVLKLI-YEIPDDEFAERLD-----FLTEIL--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLD 188 (325)
T ss_pred hhHHHHHHH-HhCCHHHHHHHHH-----HHHHHh--cchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcc
Confidence 122111111 1233444443322 222222 22334455667899999999999999643
Q ss_pred ----HHHhHhc------CCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHHHhcch
Q 000746 782 ----SCIKEEL------RGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEELSKHGR 831 (1303)
Q Consensus 782 ----~~i~~~~------~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l~~~~~ 831 (1303)
..+++.+ ++.||++.||.++-+. .||||++++.|+++..|+.++|.++-+
T Consensus 189 V~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~ 249 (325)
T COG4586 189 VNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFG 249 (325)
T ss_pred hhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHHhC
Confidence 2333322 5899999999998864 699999999999999999999876533
No 407
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.67 E-value=1.1e-16 Score=171.92 Aligned_cols=131 Identities=22% Similarity=0.244 Sum_probs=95.2
Q ss_pred ceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCc--------eE----------EEcCeEEEEccCcccccccH
Q 000746 658 SNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDA--------SV----------VIRGTVAYVPQISWIFNATL 719 (1303)
Q Consensus 658 ~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~--------~~----------~~~~~iayv~Q~p~l~~~Ti 719 (1303)
+++++++++| +++|+||||||||||+++|.|.+++..|. .+ ..+.+|+|++|+|..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 99999999999999999999988654221 01 1135799999999887
Q ss_pred HHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH------------------
Q 000746 720 RKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN------------------ 781 (1303)
Q Consensus 720 reNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~------------------ 781 (1303)
|+.. .+++..++++. ++.. ......||||||||++||||+..
T Consensus 89 -----~~~~-~~~~~~~~l~~----------~~~~----~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~L 148 (197)
T cd03278 89 -----YSII-SQGDVSEIIEA----------PGKK----VQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAAL 148 (197)
T ss_pred -----eeEE-ehhhHHHHHhC----------CCcc----ccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccC
Confidence 2211 13334444433 1111 23456799999999999999641
Q ss_pred ---------HHHhHhcCCCEEEEEecCCCcccccCEEEEEe
Q 000746 782 ---------SCIKEELRGKTRILVTNQLHFLPHVDRIILVS 813 (1303)
Q Consensus 782 ---------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~ 813 (1303)
+.+++..++.|+|++||+++.+..||+++.+.
T Consensus 149 D~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~ 189 (197)
T cd03278 149 DDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYGVT 189 (197)
T ss_pred CHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEEEE
Confidence 12333335789999999999999999999884
No 408
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.62 E-value=3.7e-16 Score=179.25 Aligned_cols=177 Identities=21% Similarity=0.369 Sum_probs=140.1
Q ss_pred CCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-EcCeEEEEccCcc---
Q 000746 638 LPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-IRGTVAYVPQISW--- 713 (1303)
Q Consensus 638 ~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-~~~~iayv~Q~p~--- 713 (1303)
.+.+.++|++|+|+++..+++++||-|..++.+++|||||+||||||+++.|++.|..|.+.. .+..+++-.|+-.
T Consensus 387 ~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~l 466 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQL 466 (614)
T ss_pred CCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhc
Confidence 467999999999988778999999999999999999999999999999999999999985432 3456777777543
Q ss_pred cccccHHHHHc--cCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH----------
Q 000746 714 IFNATLRKNIL--FGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN---------- 781 (1303)
Q Consensus 714 l~~~TireNI~--~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~---------- 781 (1303)
-.+.|.-|+++ |....+.+.++..+..|+|..|...-|- .+||+|||.||..||.+++
T Consensus 467 dl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~----------~~LS~Gqr~rVlFa~l~~kqP~lLlLDEP 536 (614)
T KOG0927|consen 467 DLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPM----------SQLSDGQRRRVLFARLAVKQPHLLLLDEP 536 (614)
T ss_pred CcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccch----------hhcccccchhHHHHHHHhcCCcEEEecCC
Confidence 45678888887 4434567888999999999877655442 4699999999999999543
Q ss_pred ---------HHHhHhc--CCCEEEEEecCCCcccc-cCEEEEEeCCEEEE-ecCHH
Q 000746 782 ---------SCIKEEL--RGKTRILVTNQLHFLPH-VDRIILVSEGMIKE-EGSFE 824 (1303)
Q Consensus 782 ---------~~i~~~~--~~~TvilvtH~~~~l~~-aD~ii~l~~G~i~~-~g~~~ 824 (1303)
+.+.+.+ ..-+||+|||+..++.+ |++|.+.+||.+.. .|++.
T Consensus 537 tnhLDi~tid~laeaiNe~~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~ 592 (614)
T KOG0927|consen 537 TNHLDIETIDALAEAINEFPGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIE 592 (614)
T ss_pred CcCCCchhHHHHHHHHhccCCceeeeechhhHHHHHHHHhHhhccCceeecCccHH
Confidence 1122222 24689999999999865 89999999888764 45444
No 409
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.61 E-value=5.6e-16 Score=151.94 Aligned_cols=166 Identities=27% Similarity=0.392 Sum_probs=107.1
Q ss_pred cEEEEeeEEEeCC---C---CCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-------------
Q 000746 640 AVSIKNGNFSWDS---K---SPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------- 700 (1303)
Q Consensus 640 ~i~~~~~~f~~~~---~---~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------- 700 (1303)
.+.++|++.++.- + -|+++|+||+++.||++++-||||+|||||++.|-|.|.|++|.+..
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 3667787766631 1 18999999999999999999999999999999999999999986432
Q ss_pred -------EcCeEEEEccCcc-cccccH----HHHHc-cCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCch
Q 000746 701 -------IRGTVAYVPQISW-IFNATL----RKNIL-FGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISG 767 (1303)
Q Consensus 701 -------~~~~iayv~Q~p~-l~~~Ti----reNI~-~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSG 767 (1303)
.+..||||+|--- +..-+- .|-++ -|-+.++.+ . ++..|..-+ .+|+.+- .--..++||
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~-~---~a~~Ll~rL-nlperLW---~LaPaTFSG 155 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVAR-A---KAADLLTRL-NLPERLW---SLAPATFSG 155 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHH-H---HHHHHHHHc-CCCHHHh---cCCCcccCC
Confidence 1346999999532 222222 22222 222222111 1 111222111 1233221 122467999
Q ss_pred HHHHHHHHHHHHHH-----------------------HHHhH-hcCCCEEEEEecCCCccc-ccCEEEEEe
Q 000746 768 GQKQRVSMARAVFN-----------------------SCIKE-ELRGKTRILVTNQLHFLP-HVDRIILVS 813 (1303)
Q Consensus 768 GQkQRiaLARAl~~-----------------------~~i~~-~~~~~TvilvtH~~~~l~-~aD~ii~l~ 813 (1303)
|++||+.|||..+- +.|.+ ..+|..+|=|-|+-+.-. -|||++-|.
T Consensus 156 GEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~ 226 (235)
T COG4778 156 GEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVS 226 (235)
T ss_pred chheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeecc
Confidence 99999999999431 22333 236889999999977643 489988774
No 410
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.60 E-value=2e-15 Score=196.21 Aligned_cols=184 Identities=23% Similarity=0.374 Sum_probs=142.1
Q ss_pred CcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-------------EcCeE
Q 000746 639 PAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-------------IRGTV 705 (1303)
Q Consensus 639 ~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-------------~~~~i 705 (1303)
..+..+|++..|+....+.+++++.|++||+.++.|+|||||||.++.|.|+.+|++|.... .++++
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~i 642 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQL 642 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhc
Confidence 56889999999986545899999999999999999999999999999999999999985432 34569
Q ss_pred EEEccCcccc-cccHHHHHccCC---CCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH
Q 000746 706 AYVPQISWIF-NATLRKNILFGS---EFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN 781 (1303)
Q Consensus 706 ayv~Q~p~l~-~~TireNI~~g~---~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~ 781 (1303)
|||||+.-++ .-|.||.+.+.. ...+.++.++++ .+.+.+...|+++ + .-.++|||+|.|+++|-|++-
T Consensus 643 GyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~--~ll~~~~L~~~~~-~----~~~~ySgG~kRkLs~aialig 715 (885)
T KOG0059|consen 643 GYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIE--KLLRLVGLGPYAN-K----QVRTYSGGNKRRLSFAIALIG 715 (885)
T ss_pred ccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHH--HHHHHcCChhhhc-c----chhhCCCcchhhHHHHHHHhc
Confidence 9999998887 569999998642 233333333322 1222233333333 2 245799999999999999642
Q ss_pred -----------------------HHHhHhcC-CCEEEEEecCCCcccc-cCEEEEEeCCEEEEecCHHHHHhc
Q 000746 782 -----------------------SCIKEELR-GKTRILVTNQLHFLPH-VDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 782 -----------------------~~i~~~~~-~~TvilvtH~~~~l~~-aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
+.+.+..+ ++.+|+.||.++..+. |||+.+|.+|++...|+++++..+
T Consensus 716 ~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsr 788 (885)
T KOG0059|consen 716 DPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSR 788 (885)
T ss_pred CCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhh
Confidence 23444444 4599999999999765 999999999999999999999754
No 411
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.58 E-value=4.6e-15 Score=162.08 Aligned_cols=158 Identities=16% Similarity=0.131 Sum_probs=102.2
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEec-CCcEEEEEcCCCCChHHHHHHHhcCC-CCCCCceE-----------EEcCeEE
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIP-VGSLVAIVGGTGEGKTSLVSAMLGEL-PPLKDASV-----------VIRGTVA 706 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~-~G~~~~ivG~sGsGKSTLl~~llg~~-~~~~g~~~-----------~~~~~ia 706 (1303)
.|+++|.. +|.+. ++++|+.. +|++++|+||||||||||+++|.+.+ .+..+... .....|+
T Consensus 5 ~i~l~nf~-~y~~~----~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~ 79 (213)
T cd03279 5 KLELKNFG-PFREE----QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVS 79 (213)
T ss_pred EEEEECCc-CcCCc----eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEE
Confidence 47888887 65433 56777654 58999999999999999999999533 22221111 0233588
Q ss_pred EEccCcccccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCC-CCccccCCCCCCchHHHHHHHHHHHHHHH---
Q 000746 707 YVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDR-DLTEIGERGVNISGGQKQRVSMARAVFNS--- 782 (1303)
Q Consensus 707 yv~Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g-~~T~ige~G~~LSGGQkQRiaLARAl~~~--- 782 (1303)
+++|++...-...| .. ..+.+.+.+.. . ++.+ .++.+...+.+||||||||++||||+..+
T Consensus 80 ~~f~~~~~~~~~~r----~~-gl~~~~~~~~~---~-------l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~ 144 (213)
T cd03279 80 FTFQLGGKKYRVER----SR-GLDYDQFTRIV---L-------LPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVL 144 (213)
T ss_pred EEEEECCeEEEEEE----ec-CCCHHHHHHhh---h-------hhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHh
Confidence 88888743222222 21 23333333221 0 1222 23445667789999999999999998521
Q ss_pred ------------------------------HHhHhc-CCCEEEEEecCCCcccc-cCEEEEEeCCEE
Q 000746 783 ------------------------------CIKEEL-RGKTRILVTNQLHFLPH-VDRIILVSEGMI 817 (1303)
Q Consensus 783 ------------------------------~i~~~~-~~~TvilvtH~~~~l~~-aD~ii~l~~G~i 817 (1303)
.+.+.. +++|+|+|||+++.+.. +|+++++++|.+
T Consensus 145 ~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 145 QNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred hhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 122222 37899999999998754 799999998853
No 412
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.57 E-value=5.8e-15 Score=165.20 Aligned_cols=165 Identities=19% Similarity=0.213 Sum_probs=94.8
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCC----------------CCCCCceEEEcCe
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGEL----------------PPLKDASVVIRGT 704 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~----------------~~~~g~~~~~~~~ 704 (1303)
|+++|-- +|.+ ..++++++ |++++|+||||||||||+++|.+.+ .+.+|. ......
T Consensus 4 i~~~nfk-sy~~-~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~-~~~~~~ 75 (243)
T cd03272 4 VIIQGFK-SYKD-QTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGP-SVMSAY 75 (243)
T ss_pred EEEeCcc-Cccc-CcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCC-CCceEE
Confidence 4555431 3443 34666765 7899999999999999999998443 222220 001122
Q ss_pred EEEEccCcccc------cccHH-------HHHccCC-CCChhhHHHHHHHHhhHHHh--hcCCCCCCc-------cccCC
Q 000746 705 VAYVPQISWIF------NATLR-------KNILFGS-EFDPAKYWKTVDVSALQHDL--DLLPDRDLT-------EIGER 761 (1303)
Q Consensus 705 iayv~Q~p~l~------~~Tir-------eNI~~g~-~~~~~~~~~vl~~~~l~~~i--~~lp~g~~T-------~ige~ 761 (1303)
+.++.|++.-. +-+++ +++.+.. ..+.+++...++.+++.++- ...++|..+ ...++
T Consensus 76 v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~ 155 (243)
T cd03272 76 VEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQE 155 (243)
T ss_pred EEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhcccccccc
Confidence 33333332100 00111 2222221 23445555555555443210 011222211 23567
Q ss_pred CCCCchHHHHHHHHHHHHHH---------------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEe
Q 000746 762 GVNISGGQKQRVSMARAVFN---------------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVS 813 (1303)
Q Consensus 762 G~~LSGGQkQRiaLARAl~~---------------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~ 813 (1303)
+.+||||||||++||||+.. +.+.+..+++|+|++||+.+....||++++|+
T Consensus 156 ~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~~~~~d~i~~l~ 234 (243)
T cd03272 156 MQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPELLEVADKFYGVK 234 (243)
T ss_pred ccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEE
Confidence 78999999999999999851 12334435788999999988888999999984
No 413
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.56 E-value=1.1e-12 Score=152.12 Aligned_cols=200 Identities=16% Similarity=0.177 Sum_probs=120.4
Q ss_pred HHhcChhhHhhcCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHccCcccccccchh
Q 000746 1102 EALNGLSTIRAFKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMI---WLIATFAVMQNGRAENQVAFAS 1178 (1303)
Q Consensus 1102 E~l~Gi~tIrAf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~ 1178 (1303)
+...+...|--|+.++.+....++..+..............|+++..+++.-+.. +++...-.+... .-....-+-
T Consensus 270 rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h-~y~~~s~aE 348 (659)
T KOG0060|consen 270 RLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGH-VYDDLSPAE 348 (659)
T ss_pred eeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeeccc-ccCCcCHHH
Confidence 4455666676677766666555555555555555556667788887766542211 111110011110 000011111
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCC-----------------CCCCC-CCCCCCCCCC
Q 000746 1179 TMGLL---LSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPS-----------------EAPGM-VESNRPPPAW 1237 (1303)
Q Consensus 1179 ~~gl~---l~~~~~l~~~l~~~~~~~~~~e~~~~sveRi~~~~~~~~-----------------E~~~~-~~~~~~~~~w 1237 (1303)
..+.. ..+...+.+.+..++....++..--+-..||.|+.+.-. |..+. ...+..+..|
T Consensus 349 L~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~ 428 (659)
T KOG0060|consen 349 LSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAE 428 (659)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccc
Confidence 22221 122334445555555555555555666788888764210 00000 0111224567
Q ss_pred CCcceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1238 PSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1238 p~~G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|.+-.|+|++|++.=+.+.+...+|+||+|+.|+.+-|+|+||+|||||++.|.++++..+|+|.
T Consensus 429 ~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~ 493 (659)
T KOG0060|consen 429 PADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLT 493 (659)
T ss_pred cccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEE
Confidence 88889999999999876555556679999999999999999999999999999999999999885
No 414
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.56 E-value=2e-14 Score=184.17 Aligned_cols=73 Identities=27% Similarity=0.498 Sum_probs=61.7
Q ss_pred ccCCCCCCchHHHHHHHHHHHHHHH--------------------------HHhHhc-CCCEEEEEecCCCcccccCEEE
Q 000746 758 IGERGVNISGGQKQRVSMARAVFNS--------------------------CIKEEL-RGKTRILVTNQLHFLPHVDRII 810 (1303)
Q Consensus 758 ige~G~~LSGGQkQRiaLARAl~~~--------------------------~i~~~~-~~~TvilvtH~~~~l~~aD~ii 810 (1303)
.+....+||||||||++||||+..+ .+.+.. +|+|+|+|||+++.+..||+|+
T Consensus 824 l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~ii 903 (943)
T PRK00349 824 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWII 903 (943)
T ss_pred ccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEE
Confidence 5777889999999999999997542 223322 5899999999999999999999
Q ss_pred EE------eCCEEEEecCHHHHHhcc
Q 000746 811 LV------SEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 811 ~l------~~G~i~~~g~~~~l~~~~ 830 (1303)
.| ++|+|+++|+++++.+..
T Consensus 904 ~Lgp~~G~~~G~Iv~~Gt~~el~~~~ 929 (943)
T PRK00349 904 DLGPEGGDGGGEIVATGTPEEVAKVE 929 (943)
T ss_pred EecCCcCCCCCEEEEeCCHHHHHhCc
Confidence 99 799999999999998654
No 415
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.52 E-value=8.3e-14 Score=185.35 Aligned_cols=72 Identities=22% Similarity=0.391 Sum_probs=60.0
Q ss_pred ccCCCCCCchHHHHHHHHHHHHHH--------------------------HHHhHhc-CCCEEEEEecCCCcccccCEEE
Q 000746 758 IGERGVNISGGQKQRVSMARAVFN--------------------------SCIKEEL-RGKTRILVTNQLHFLPHVDRII 810 (1303)
Q Consensus 758 ige~G~~LSGGQkQRiaLARAl~~--------------------------~~i~~~~-~~~TvilvtH~~~~l~~aD~ii 810 (1303)
.+....+||||||||++||||+.. +.+.+.. +|+|+|+|||+++.+..||+|+
T Consensus 803 l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi 882 (1809)
T PRK00635 803 LGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVL 882 (1809)
T ss_pred hcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEE
Confidence 567778999999999999999862 1222222 5889999999999998999999
Q ss_pred EEe------CCEEEEecCHHHHHhc
Q 000746 811 LVS------EGMIKEEGSFEELSKH 829 (1303)
Q Consensus 811 ~l~------~G~i~~~g~~~~l~~~ 829 (1303)
+|+ +|+++++|+++++...
T Consensus 883 ~L~p~gg~~~G~iv~~Gtpeel~~~ 907 (1809)
T PRK00635 883 ELGPEGGNLGGYLLASCSPEELIHL 907 (1809)
T ss_pred EEccCCCCCCCEEEEeCCHHHHHhc
Confidence 996 7999999999998753
No 416
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.51 E-value=3.7e-14 Score=159.19 Aligned_cols=150 Identities=19% Similarity=0.233 Sum_probs=99.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE----------------EcCeEEEEccCccc----------ccccHH
Q 000746 667 GSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV----------------IRGTVAYVPQISWI----------FNATLR 720 (1303)
Q Consensus 667 G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~----------------~~~~iayv~Q~p~l----------~~~Tir 720 (1303)
..+++|+||||||||||+++|.+.+.+..++.+. ....+.++.|++-. ..-||+
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 4599999999999999999999998765332211 12378999998621 145888
Q ss_pred HHHccCCC----C-----ChhhHHHHHHHHhhHHH-h-hcCCCCCC-------ccccCCCCCCchHHHHHHHHHHHHH--
Q 000746 721 KNILFGSE----F-----DPAKYWKTVDVSALQHD-L-DLLPDRDL-------TEIGERGVNISGGQKQRVSMARAVF-- 780 (1303)
Q Consensus 721 eNI~~g~~----~-----~~~~~~~vl~~~~l~~~-i-~~lp~g~~-------T~ige~G~~LSGGQkQRiaLARAl~-- 780 (1303)
+||..+.. . ..+++.+.++.+++..| . ...++|.- ........+||||||||++||||+.
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~ 184 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALL 184 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHh
Confidence 88876542 1 12344555555554311 0 00011110 2234566789999999999999864
Q ss_pred --H-----------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEe--CCE
Q 000746 781 --N-----------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVS--EGM 816 (1303)
Q Consensus 781 --~-----------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~--~G~ 816 (1303)
. +.+.+..++.|+|+|||+.+.+..||+++-+. +|.
T Consensus 185 ~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~~~~~~ 247 (251)
T cd03273 185 LFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLFRTRFVDGT 247 (251)
T ss_pred hccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEEeeCCE
Confidence 1 12334446889999999998999999998774 554
No 417
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.51 E-value=4.7e-14 Score=152.54 Aligned_cols=132 Identities=23% Similarity=0.324 Sum_probs=94.6
Q ss_pred eeeeEecCCcEEEEEcCCCCChHHHHHHH----hcCCCCCCCceE---------EEcCeEEEEccCc-----ccc-cccH
Q 000746 659 NINLDIPVGSLVAIVGGTGEGKTSLVSAM----LGELPPLKDASV---------VIRGTVAYVPQIS-----WIF-NATL 719 (1303)
Q Consensus 659 ~i~l~i~~G~~~~ivG~sGsGKSTLl~~l----lg~~~~~~g~~~---------~~~~~iayv~Q~p-----~l~-~~Ti 719 (1303)
..++++.+| +++|+||||||||||+++| .|..+|..|+.. ..+..|++++|++ .+. +-|+
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~ 93 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAI 93 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhH
Confidence 345677788 9999999999999999999 498888665321 1234799999998 333 2399
Q ss_pred HHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHH------HHHHHHHHH------------
Q 000746 720 RKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQR------VSMARAVFN------------ 781 (1303)
Q Consensus 720 reNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQR------iaLARAl~~------------ 781 (1303)
.||+.++. +++..+.+ .+...+|||||||| ++||||+..
T Consensus 94 ~~~~~~~~---~~~~~~~~--------------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~ 150 (204)
T cd03240 94 LENVIFCH---QGESNWPL--------------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTT 150 (204)
T ss_pred hhceeeec---hHHHHHHH--------------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCcc
Confidence 99998752 22222221 34567899999996 788888421
Q ss_pred -------H-HH----hHhcC--CCEEEEEecCCCcccccCEEEEEeC
Q 000746 782 -------S-CI----KEELR--GKTRILVTNQLHFLPHVDRIILVSE 814 (1303)
Q Consensus 782 -------~-~i----~~~~~--~~TvilvtH~~~~l~~aD~ii~l~~ 814 (1303)
+ .+ .+..+ ++|+|++||+++.+..||+++.|++
T Consensus 151 ~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 151 NLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred ccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 2 22 22223 6899999999999889999999953
No 418
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.51 E-value=3.6e-14 Score=164.42 Aligned_cols=68 Identities=21% Similarity=0.399 Sum_probs=62.2
Q ss_pred CCCCCcceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhccc-----CCCCeee
Q 000746 1235 PAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVE-----LERGENI 1302 (1303)
Q Consensus 1235 ~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd-----~~~G~I~ 1302 (1303)
..||..|.|+|+|++++|+++.+++|+|+||+|++||++|||||+|||||||+++|+|+++ |++|+|.
T Consensus 73 ~~~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~ 145 (329)
T PRK14257 73 EDFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIY 145 (329)
T ss_pred CCCCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEE
Confidence 4599999999999999997555679999999999999999999999999999999999997 4689875
No 419
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.50 E-value=5.3e-15 Score=145.76 Aligned_cols=171 Identities=20% Similarity=0.297 Sum_probs=124.0
Q ss_pred EEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc-------------CeEEE
Q 000746 641 VSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR-------------GTVAY 707 (1303)
Q Consensus 641 i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~-------------~~iay 707 (1303)
+.++|+... .-|-.+|.++..||..-+|||||||||||+..+.|+.+- +|++ .+. ++=+|
T Consensus 4 ~qln~v~~~-----tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~-sGsi-~~~G~~l~~~~~~eLArhRAY 76 (248)
T COG4138 4 MQLNDVAES-----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG-SGSI-QFAGQPLEAWSATELARHRAY 76 (248)
T ss_pred eeecccccc-----ccccccccccccceEEEEECCCCccHHHHHHHHhCCCCC-CceE-EECCcchhHHhHhHHHHHHHH
Confidence 455666532 346778999999999999999999999999999999864 6643 332 34688
Q ss_pred EccC-cccccccHHHHHccCCCCC--hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHH-----
Q 000746 708 VPQI-SWIFNATLRKNILFGSEFD--PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAV----- 779 (1303)
Q Consensus 708 v~Q~-p~l~~~TireNI~~g~~~~--~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl----- 779 (1303)
.+|+ .-.|..-|..-+.+..|.. .+.+.++.+.-+ .+..+|..-..||||+-||+-||-..
T Consensus 77 LsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~-----------l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~P 145 (248)
T COG4138 77 LSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALA-----------LDDKLGRSTNQLSGGEWQRVRLAAVVLQITP 145 (248)
T ss_pred HhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhc-----------ccchhhhhhhhcCcccceeeEEeEEEEEecC
Confidence 8875 4577788888888877641 112222222222 22234555578999999999999651
Q ss_pred -------------------------HHHHHhHhc-CCCEEEEEecCCCc-ccccCEEEEEeCCEEEEecCHHHHHhc
Q 000746 780 -------------------------FNSCIKEEL-RGKTRILVTNQLHF-LPHVDRIILVSEGMIKEEGSFEELSKH 829 (1303)
Q Consensus 780 -------------------------~~~~i~~~~-~~~TvilvtH~~~~-l~~aD~ii~l~~G~i~~~g~~~~l~~~ 829 (1303)
++..+.+.. .|.+||+..|+++. ++.||++..++.|++..+|..+|.+..
T Consensus 146 d~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 146 DANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred CCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 222333322 69999999999975 899999999999999999999998754
No 420
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.47 E-value=6.6e-14 Score=156.57 Aligned_cols=150 Identities=18% Similarity=0.181 Sum_probs=101.7
Q ss_pred EecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceE-------------------EEcCeEEEEccCcc--cccccHHH
Q 000746 663 DIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASV-------------------VIRGTVAYVPQISW--IFNATLRK 721 (1303)
Q Consensus 663 ~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~-------------------~~~~~iayv~Q~p~--l~~~Tire 721 (1303)
...++ +++|+||||||||||+.+|.+.+.+..|+.. ...-.+.|..|++- ++..++++
T Consensus 19 ~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~ 97 (247)
T cd03275 19 GPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITG 97 (247)
T ss_pred cCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEEC
Confidence 33344 9999999999999999999988765433211 01113455555432 33444444
Q ss_pred HHcc----CCCCChhhHHHHHHHHhhHHHhhc--CCCCCCccccCCC---------CCCchHHHHHHHHHHHHHHH----
Q 000746 722 NILF----GSEFDPAKYWKTVDVSALQHDLDL--LPDRDLTEIGERG---------VNISGGQKQRVSMARAVFNS---- 782 (1303)
Q Consensus 722 NI~~----g~~~~~~~~~~vl~~~~l~~~i~~--lp~g~~T~ige~G---------~~LSGGQkQRiaLARAl~~~---- 782 (1303)
+-.. +.+.+++++.+.++.++++.+... .++|.-+.+.+.. .+||||||||++||||+..+
T Consensus 98 ~~~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~ 177 (247)
T cd03275 98 GSSSYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQP 177 (247)
T ss_pred CceEEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCC
Confidence 3211 335678888999999998755322 3566666665433 68999999999999997521
Q ss_pred -----------------------HHhHhcC-CCEEEEEecCCCcccccCEEEEEe
Q 000746 783 -----------------------CIKEELR-GKTRILVTNQLHFLPHVDRIILVS 813 (1303)
Q Consensus 783 -----------------------~i~~~~~-~~TvilvtH~~~~l~~aD~ii~l~ 813 (1303)
.+.+..+ +.|+|+|||+.+.+..||++++|.
T Consensus 178 p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~ 232 (247)
T cd03275 178 APFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVY 232 (247)
T ss_pred CCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEE
Confidence 2223323 789999999999999999999984
No 421
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.46 E-value=4.6e-13 Score=171.40 Aligned_cols=69 Identities=26% Similarity=0.524 Sum_probs=58.4
Q ss_pred ccCCCCCCchHHHHHHHHHHHHHHH--------------------------HHhHhc-CCCEEEEEecCCCcccccCEEE
Q 000746 758 IGERGVNISGGQKQRVSMARAVFNS--------------------------CIKEEL-RGKTRILVTNQLHFLPHVDRII 810 (1303)
Q Consensus 758 ige~G~~LSGGQkQRiaLARAl~~~--------------------------~i~~~~-~~~TvilvtH~~~~l~~aD~ii 810 (1303)
.+....+||||||||++||||+..+ .+.+.. +|+|+|+++|+++.+..||+|+
T Consensus 822 l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii 901 (924)
T TIGR00630 822 LGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYII 901 (924)
T ss_pred hcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEE
Confidence 5777889999999999999997631 222222 5899999999999999999999
Q ss_pred EE------eCCEEEEecCHHHH
Q 000746 811 LV------SEGMIKEEGSFEEL 826 (1303)
Q Consensus 811 ~l------~~G~i~~~g~~~~l 826 (1303)
+| ++|+|++.|+++++
T Consensus 902 ~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 902 DLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EecCCccCCCCEEEEeCCHHHh
Confidence 99 79999999998875
No 422
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.46 E-value=5.9e-13 Score=153.29 Aligned_cols=185 Identities=19% Similarity=0.321 Sum_probs=116.6
Q ss_pred CCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcCeEEEEccCcccccc
Q 000746 638 LPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWIFNA 717 (1303)
Q Consensus 638 ~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~~iayv~Q~p~l~~~ 717 (1303)
...+.++|++++|.+. ..++|..|++.+|+.++|+|++||||||+|++|.|--.|..-.. .+...+++----..
T Consensus 73 s~dvk~~sls~s~~g~-~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~-----d~y~ls~e~~ps~~ 146 (614)
T KOG0927|consen 73 SRDVKIESLSLSFHGV-ELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHI-----DFYLLSREIEPSEK 146 (614)
T ss_pred cccceeeeeeeccCCc-eeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCccc-----chhhhcccCCCchH
Confidence 3569999999999754 68999999999999999999999999999999999887755321 12222222111111
Q ss_pred -cHHHHHccCCC------CChhhHHHHHHH-------------HhhHHH------hhcCC-CCCC-ccccCCCCCCchHH
Q 000746 718 -TLRKNILFGSE------FDPAKYWKTVDV-------------SALQHD------LDLLP-DRDL-TEIGERGVNISGGQ 769 (1303)
Q Consensus 718 -TireNI~~g~~------~~~~~~~~vl~~-------------~~l~~~------i~~lp-~g~~-T~ige~G~~LSGGQ 769 (1303)
++..-+..... +-.|+|...++. ..++.| ...+. .|.. ......-.+|||||
T Consensus 147 ~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGw 226 (614)
T KOG0927|consen 147 QAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGW 226 (614)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchH
Confidence 12222111100 000111111110 000000 00011 1111 22334456899999
Q ss_pred HHHHHHHHHHHHH-------------------HHhHhc--CCC-EEEEEecCCCcccc-cCEEEEEeCCE-EEEecCHHH
Q 000746 770 KQRVSMARAVFNS-------------------CIKEEL--RGK-TRILVTNQLHFLPH-VDRIILVSEGM-IKEEGSFEE 825 (1303)
Q Consensus 770 kQRiaLARAl~~~-------------------~i~~~~--~~~-TvilvtH~~~~l~~-aD~ii~l~~G~-i~~~g~~~~ 825 (1303)
|.|++||||||.+ -+.+.+ -++ ++|+++|.-++++. |.+|+.|++++ +...|++++
T Consensus 227 rmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnydq 306 (614)
T KOG0927|consen 227 RMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQ 306 (614)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheecccceeeecCCHHH
Confidence 9999999998742 133444 245 89999999999975 99999999998 778999988
Q ss_pred HHh
Q 000746 826 LSK 828 (1303)
Q Consensus 826 l~~ 828 (1303)
+..
T Consensus 307 y~~ 309 (614)
T KOG0927|consen 307 YVK 309 (614)
T ss_pred Hhh
Confidence 764
No 423
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=4.3e-13 Score=148.71 Aligned_cols=176 Identities=23% Similarity=0.360 Sum_probs=121.7
Q ss_pred CCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-EcCeEEEEccCcc--c
Q 000746 638 LPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-IRGTVAYVPQISW--I 714 (1303)
Q Consensus 638 ~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-~~~~iayv~Q~p~--l 714 (1303)
.+.+-+.||+|.|++.+|.+++++|-|.-.+.++||||+|.||||||++|+|.++|..|.... .|-+||+-.|+.- |
T Consensus 584 PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L 663 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEAL 663 (807)
T ss_pred CCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhh
Confidence 456789999999999899999999999999999999999999999999999999999985432 3447999988753 2
Q ss_pred -ccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHH--------HH----
Q 000746 715 -FNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAV--------FN---- 781 (1303)
Q Consensus 715 -~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl--------~~---- 781 (1303)
...|--|-+.-+-..+.++-++.+-..+|..-. +|. +-..||||||.||+||--- ++
T Consensus 664 ~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHA-------HTi---kikdLSGGQKaRValaeLal~~PDvlILDEPTN 733 (807)
T KOG0066|consen 664 NGEETPVEYLQRKFNLPYQEARKQLGTFGLASHA-------HTI---KIKDLSGGQKARVALAELALGGPDVLILDEPTN 733 (807)
T ss_pred ccccCHHHHHHHhcCCChHHHHHHhhhhhhhhcc-------ceE---eeeecCCcchHHHHHHHHhcCCCCEEEecCCCC
Confidence 234666666522222333334444444443211 221 2346999999999999761 11
Q ss_pred -----------HHHhHhcCCCEEEEEecCCCcccccCE-EEEEeCCEEEE-ecCHHH
Q 000746 782 -----------SCIKEELRGKTRILVTNQLHFLPHVDR-IILVSEGMIKE-EGSFEE 825 (1303)
Q Consensus 782 -----------~~i~~~~~~~TvilvtH~~~~l~~aD~-ii~l~~G~i~~-~g~~~~ 825 (1303)
++|.+. +-.||+|||+-..+...|. .+|+++-.|-+ .|.+++
T Consensus 734 NLDIESIDALaEAIney--~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeD 788 (807)
T KOG0066|consen 734 NLDIESIDALAEAINEY--NGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFED 788 (807)
T ss_pred CcchhhHHHHHHHHHhc--cCcEEEEecccceeeecCceEEEEccCChhhccccHHH
Confidence 223222 4579999999998877654 45556544443 344544
No 424
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.44 E-value=8e-13 Score=151.92 Aligned_cols=184 Identities=23% Similarity=0.383 Sum_probs=136.9
Q ss_pred CCCCCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcC-----------
Q 000746 635 EPELPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG----------- 703 (1303)
Q Consensus 635 ~~~~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~----------- 703 (1303)
.++...++++|++..-+...+.+++|||++++||+++|.|-.|-|-+-|+.+|.|+.++.+| .+.+++
T Consensus 252 ~pg~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G-~I~l~G~~v~~~~~~~~ 330 (501)
T COG3845 252 TPGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASG-RILLNGKDVLGRLSPRE 330 (501)
T ss_pred CCCCeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCc-eEEECCEeccccCCHHH
Confidence 34556789999997654434689999999999999999999999999999999999988775 444332
Q ss_pred ----eEEEEccCc----ccccccHHHHHccCCCCCh----------hhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCC
Q 000746 704 ----TVAYVPQIS----WIFNATLRKNILFGSEFDP----------AKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNI 765 (1303)
Q Consensus 704 ----~iayv~Q~p----~l~~~TireNI~~g~~~~~----------~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~L 765 (1303)
.++|||.|. -....|+.||+.++.-.++ ..+.+.. ..+-+.++--+.+-++ .-.+|
T Consensus 331 ~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a--~~li~~fdVr~~~~~~----~a~~L 404 (501)
T COG3845 331 RRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFA--RELIEEFDVRAPSPDA----PARSL 404 (501)
T ss_pred HHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHH--HHHHHHcCccCCCCCc----chhhc
Confidence 589999887 3668899999998753221 2222221 1233333333444443 34579
Q ss_pred chHHHHHHHHHHHHH------------------------HHHHhHhcCCCEEEEEecCCCc-ccccCEEEEEeCCEEEEe
Q 000746 766 SGGQKQRVSMARAVF------------------------NSCIKEELRGKTRILVTNQLHF-LPHVDRIILVSEGMIKEE 820 (1303)
Q Consensus 766 SGGQkQRiaLARAl~------------------------~~~i~~~~~~~TvilvtH~~~~-l~~aD~ii~l~~G~i~~~ 820 (1303)
|||+.||+-+||-+. +..+....+|+.|++|+-+++. +..||+|.||.+|+++..
T Consensus 405 SGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~ 484 (501)
T COG3845 405 SGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGI 484 (501)
T ss_pred CCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecc
Confidence 999999999999842 2333444579999999999987 567999999999999987
Q ss_pred cCHHH
Q 000746 821 GSFEE 825 (1303)
Q Consensus 821 g~~~~ 825 (1303)
.++++
T Consensus 485 ~~~~~ 489 (501)
T COG3845 485 VPPEE 489 (501)
T ss_pred ccccc
Confidence 76654
No 425
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.44 E-value=6.5e-13 Score=149.46 Aligned_cols=156 Identities=22% Similarity=0.340 Sum_probs=112.7
Q ss_pred eeEEEeCCCCCccceeeeEe-----cCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcCeEEEEccCc-cccccc
Q 000746 645 NGNFSWDSKSPTLSNINLDI-----PVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQIS-WIFNAT 718 (1303)
Q Consensus 645 ~~~f~~~~~~~~L~~i~l~i-----~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~~iayv~Q~p-~l~~~T 718 (1303)
+.-+.|++-...+.+..|++ ..||+++++||||-||||+++.|.|.++|++|+ ...-+|+|=||-- .-++||
T Consensus 340 ~~lv~y~~~~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~--~~~~~vSyKPQyI~~~~~gt 417 (591)
T COG1245 340 DTLVEYPDLKKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS--EEDLKVSYKPQYISPDYDGT 417 (591)
T ss_pred ceeeecchheeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC--CccceEeecceeecCCCCCc
Confidence 33455654444556666655 567889999999999999999999999999987 4556799999942 238999
Q ss_pred HHHHHccCCC--CChhhHHH-HHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH---------------
Q 000746 719 LRKNILFGSE--FDPAKYWK-TVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF--------------- 780 (1303)
Q Consensus 719 ireNI~~g~~--~~~~~~~~-vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~--------------- 780 (1303)
|++-+.-..+ +...+|+. +++--.|++- +...-.+||||+.||+|+|-||.
T Consensus 418 V~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i-----------~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~L 486 (591)
T COG1245 418 VEDLLRSAIRSAFGSSYFKTEIVKPLNLEDL-----------LERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYL 486 (591)
T ss_pred HHHHHHHhhhhhcccchhHHhhcCccchHHH-----------HhcccccCCchhHHHHHHHHHhccccCEEEecCchhhc
Confidence 9998764332 44555543 3333333332 22334579999999999999953
Q ss_pred --------HHHHhHhc--CCCEEEEEecCCCcccc-cCEEEEEe
Q 000746 781 --------NSCIKEEL--RGKTRILVTNQLHFLPH-VDRIILVS 813 (1303)
Q Consensus 781 --------~~~i~~~~--~~~TvilvtH~~~~l~~-aD~ii~l~ 813 (1303)
.++|++.. .++|.++|-|++-.+.+ +|++++.+
T Consensus 487 DvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 487 DVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred cHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 23455433 58999999999999886 89999985
No 426
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.43 E-value=2.2e-14 Score=155.83 Aligned_cols=161 Identities=19% Similarity=0.208 Sum_probs=104.1
Q ss_pred cEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcCeEEEEccCccccc-cc
Q 000746 640 AVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWIFN-AT 718 (1303)
Q Consensus 640 ~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~~iayv~Q~p~l~~-~T 718 (1303)
.++++|.. +|.+ ..+++++++ ++++|+|||||||||++++|...+-... . ...+++++|++|+....+ .|
T Consensus 5 ~l~l~nfk-~~~~-~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G~~~-~-~~~~~~i~~~~~~~~~~~~~~ 75 (212)
T cd03274 5 KLVLENFK-SYAG-EQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFGFRA-S-KMRQKKLSDLIHNSAGHPNLD 75 (212)
T ss_pred EEEEECcc-cCCC-CeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhccCH-H-HhhhhhHHHHhcCCCCCCCCc
Confidence 36666654 5643 358888887 8999999999999999999983221100 0 011257999999987664 47
Q ss_pred HHHHHccCCCCCh-hhHH--HH-HHH------HhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH----H---
Q 000746 719 LRKNILFGSEFDP-AKYW--KT-VDV------SALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF----N--- 781 (1303)
Q Consensus 719 ireNI~~g~~~~~-~~~~--~v-l~~------~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~----~--- 781 (1303)
.++++.+...... +.+. .. .+. .+-..++..+|++.++.+ ..||||||||++||||+. +
T Consensus 76 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~----~~lS~G~~~r~~la~al~~~~~~~p~ 151 (212)
T cd03274 76 SCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNI----SNLSGGEKTLSSLALVFALHHYKPTP 151 (212)
T ss_pred eEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccch----hhcCHHHHHHHHHHHHHHhcccCCCC
Confidence 8887775443210 0000 00 000 011113344566665543 479999999999999874 1
Q ss_pred --------------------HHHhHhcCCCEEEEEecCCCcccccCEEEEEe
Q 000746 782 --------------------SCIKEELRGKTRILVTNQLHFLPHVDRIILVS 813 (1303)
Q Consensus 782 --------------------~~i~~~~~~~TvilvtH~~~~l~~aD~ii~l~ 813 (1303)
+.+.+..++.|+|++||+.+....||++++|.
T Consensus 152 ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~ 203 (212)
T cd03274 152 LYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIY 203 (212)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEE
Confidence 12233335789999999988888999999994
No 427
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.43 E-value=1.6e-13 Score=143.39 Aligned_cols=60 Identities=28% Similarity=0.482 Sum_probs=56.7
Q ss_pred eEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1242 SIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1242 ~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
.|+++||+..|+. ...+|+||||+|++||.|||+|+||||||||++.|.|+.||++|+|.
T Consensus 3 ~i~~~nl~k~yp~-~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~ 62 (258)
T COG3638 3 MIEVKNLSKTYPG-GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEIL 62 (258)
T ss_pred eEEEeeeeeecCC-CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEE
Confidence 4899999999974 46899999999999999999999999999999999999999999985
No 428
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.43 E-value=1.3e-12 Score=153.70 Aligned_cols=178 Identities=25% Similarity=0.406 Sum_probs=125.5
Q ss_pred CCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcC--------------
Q 000746 638 LPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG-------------- 703 (1303)
Q Consensus 638 ~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~-------------- 703 (1303)
.+.++++|++.. ..++|+||++++||+++|.|-.|||+|-++++|.|.-++.+| .+.+++
T Consensus 261 ~~~l~v~~l~~~-----~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G-~i~l~G~~v~~~sp~~Ai~~ 334 (500)
T COG1129 261 EPVLEVRNLSGG-----GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSG-EILLDGKPVRIRSPRDAIKA 334 (500)
T ss_pred CcEEEEecCCCC-----CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCc-eEEECCEEccCCCHHHHHHc
Confidence 345678877632 258899999999999999999999999999999997766655 555443
Q ss_pred eEEEEccCc----ccccccHHHHHccCC--CCChh-hHHHHHHHHhhHHHhhcC---CCCCCccccCCCCCCchHHHHHH
Q 000746 704 TVAYVPQIS----WIFNATLRKNILFGS--EFDPA-KYWKTVDVSALQHDLDLL---PDRDLTEIGERGVNISGGQKQRV 773 (1303)
Q Consensus 704 ~iayv~Q~p----~l~~~TireNI~~g~--~~~~~-~~~~vl~~~~l~~~i~~l---p~g~~T~ige~G~~LSGGQkQRi 773 (1303)
.|+|||.|- -+...+|++||.+.. .+... .+.+.-+....++.++.| ..+.+. .-.+||||-+|++
T Consensus 335 Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~----~v~~LSGGNQQKV 410 (500)
T COG1129 335 GIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQ----PIGTLSGGNQQKV 410 (500)
T ss_pred CCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccc----hhhcCCchhhhhH
Confidence 499999764 345779999998762 11111 222222222233333333 222333 3457999999999
Q ss_pred HHHHHHHH-----------------------HHHhHhc-CCCEEEEEecCCCcc-cccCEEEEEeCCEEEEecCHHH
Q 000746 774 SMARAVFN-----------------------SCIKEEL-RGKTRILVTNQLHFL-PHVDRIILVSEGMIKEEGSFEE 825 (1303)
Q Consensus 774 aLARAl~~-----------------------~~i~~~~-~~~TvilvtH~~~~l-~~aD~ii~l~~G~i~~~g~~~~ 825 (1303)
.|||.+.. +.+++.. +|+++|+||..+..+ ..||||+||.+|+|+..=+.++
T Consensus 411 vlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~ 487 (500)
T COG1129 411 VLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDREE 487 (500)
T ss_pred HHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecccc
Confidence 99999532 2344433 689999999998774 5899999999999997544443
No 429
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.42 E-value=2.7e-12 Score=130.13 Aligned_cols=175 Identities=24% Similarity=0.419 Sum_probs=118.1
Q ss_pred CCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEc-------------Ce
Q 000746 638 LPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIR-------------GT 704 (1303)
Q Consensus 638 ~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~-------------~~ 704 (1303)
+.+|++.+..|.|+...|++-|+|+++|.|+.+.+||.||+||||||++|.|---. .|+.+.+. +.
T Consensus 11 ~~aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv-~~~~v~VlgrsaFhDt~l~~Sgd 89 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMV-GGGVVQVLGRSAFHDTSLESSGD 89 (291)
T ss_pred cceEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccc-cCCeEEEcCcCccccccccccCc
Confidence 46799999999999888999999999999999999999999999999999996543 23343321 12
Q ss_pred EEEEcc----------Ccccc-cccHHHHHccCCCC-ChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHH
Q 000746 705 VAYVPQ----------ISWIF-NATLRKNILFGSEF-DPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQR 772 (1303)
Q Consensus 705 iayv~Q----------~p~l~-~~TireNI~~g~~~-~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQR 772 (1303)
..|..- +.-|+ +-++ +...||-.. |+++-++.++.- +-| +.=+-..+|-|||.|
T Consensus 90 l~YLGgeW~~~~~~agevplq~D~sa-e~mifgV~g~dp~Rre~LI~iL--DId-----------l~WRmHkvSDGqrRR 155 (291)
T KOG2355|consen 90 LSYLGGEWSKTVGIAGEVPLQGDISA-EHMIFGVGGDDPERREKLIDIL--DID-----------LRWRMHKVSDGQRRR 155 (291)
T ss_pred eeEecccccccccccccccccccccH-HHHHhhccCCChhHhhhhhhhe--ecc-----------ceEEEeeccccchhh
Confidence 333322 11222 2233 333444332 334333333221 111 222346799999999
Q ss_pred HHHHHHHHH-----------------------HHHhH--hcCCCEEEEEecCCCccc-ccCEEEEEeCCEEEEecCHHHH
Q 000746 773 VSMARAVFN-----------------------SCIKE--ELRGKTRILVTNQLHFLP-HVDRIILVSEGMIKEEGSFEEL 826 (1303)
Q Consensus 773 iaLARAl~~-----------------------~~i~~--~~~~~TvilvtH~~~~l~-~aD~ii~l~~G~i~~~g~~~~l 826 (1303)
+.|+-.+++ +-+++ .-++.|+|..||=-+-+. .+.+++.+.+|+++..-.+++.
T Consensus 156 VQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~~i 235 (291)
T KOG2355|consen 156 VQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQKI 235 (291)
T ss_pred hHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccchh
Confidence 999987432 11222 237999999999988765 5899999999999986655554
Q ss_pred H
Q 000746 827 S 827 (1303)
Q Consensus 827 ~ 827 (1303)
.
T Consensus 236 ~ 236 (291)
T KOG2355|consen 236 K 236 (291)
T ss_pred h
Confidence 3
No 430
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=3.9e-13 Score=153.92 Aligned_cols=173 Identities=21% Similarity=0.350 Sum_probs=131.6
Q ss_pred CCCcEEEEeeEEEeCCCC-CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE-EcCeEEEEccCccc
Q 000746 637 ELPAVSIKNGNFSWDSKS-PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV-IRGTVAYVPQISWI 714 (1303)
Q Consensus 637 ~~~~i~~~~~~f~~~~~~-~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~-~~~~iayv~Q~p~l 714 (1303)
..+.+++.+|+|.|+++. +.+.++++++..-+.++++|++|+||||+++++.|+..|..|.... -|.+|+|-.|...=
T Consensus 359 ~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd 438 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVD 438 (582)
T ss_pred CCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhhh
Confidence 346799999999998776 7899999999999999999999999999999999999998874332 35689999997532
Q ss_pred c-cccHHHHHccCCC---CChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH--------H-
Q 000746 715 F-NATLRKNILFGSE---FDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF--------N- 781 (1303)
Q Consensus 715 ~-~~TireNI~~g~~---~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~--------~- 781 (1303)
+ +-.+.+--.+-+. -.+++|++.+...+|..++..-+ -..||||||-||++|-+.+ |
T Consensus 439 ~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~s----------i~~LSGGQKsrvafA~~~~~~PhlLVLDE 508 (582)
T KOG0062|consen 439 FLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQS----------IASLSGGQKSRVAFAACTWNNPHLLVLDE 508 (582)
T ss_pred HHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhcc----------ccccCCcchhHHHHHHHhcCCCcEEEecC
Confidence 2 2222221111111 26889999988888877765432 2469999999999999832 1
Q ss_pred ----------HHHhHhcC--CCEEEEEecCCCcccc-cCEEEEEeCCEEEE
Q 000746 782 ----------SCIKEELR--GKTRILVTNQLHFLPH-VDRIILVSEGMIKE 819 (1303)
Q Consensus 782 ----------~~i~~~~~--~~TvilvtH~~~~l~~-aD~ii~l~~G~i~~ 819 (1303)
+++...++ +--||+|||+.+++.. |+.+.+.+||++..
T Consensus 509 PTNhLD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 509 PTNHLDRDSLGALAKALKNFNGGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred CCccccHHHHHHHHHHHHhcCCcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 12222322 4579999999999875 89999999999985
No 431
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.40 E-value=1.7e-13 Score=138.03 Aligned_cols=59 Identities=32% Similarity=0.517 Sum_probs=56.8
Q ss_pred EEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+|+||+.+|+.+ +++|+||||+|++||.+=++|||||||||++++|+|.-.|++|+|.
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~ 60 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKIL 60 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEE
Confidence 8999999999876 7899999999999999999999999999999999999999999985
No 432
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.39 E-value=5.1e-12 Score=151.83 Aligned_cols=74 Identities=28% Similarity=0.503 Sum_probs=61.4
Q ss_pred cccCCCCCCchHHHHHHHHHHHHHH--------------------------HHHhHhc-CCCEEEEEecCCCcccccCEE
Q 000746 757 EIGERGVNISGGQKQRVSMARAVFN--------------------------SCIKEEL-RGKTRILVTNQLHFLPHVDRI 809 (1303)
Q Consensus 757 ~ige~G~~LSGGQkQRiaLARAl~~--------------------------~~i~~~~-~~~TvilvtH~~~~l~~aD~i 809 (1303)
.+|....+||||+.|||-||.-|-+ +++.+.. +|.|||+|-|+++.++.||+|
T Consensus 815 ~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~AD~I 894 (935)
T COG0178 815 KLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWI 894 (935)
T ss_pred ecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEeecCEE
Confidence 3688889999999999999987432 1222222 699999999999999999999
Q ss_pred EEE------eCCEEEEecCHHHHHhcc
Q 000746 810 ILV------SEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 810 i~l------~~G~i~~~g~~~~l~~~~ 830 (1303)
+-| +.|+|+.+|+|+|+.+..
T Consensus 895 IDLGPeGG~~GG~iva~GTPeeva~~~ 921 (935)
T COG0178 895 IDLGPEGGDGGGEIVASGTPEEVAKVK 921 (935)
T ss_pred EEcCCCCCCCCceEEEecCHHHHHhCc
Confidence 999 368999999999998754
No 433
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.38 E-value=6e-13 Score=137.39 Aligned_cols=59 Identities=31% Similarity=0.501 Sum_probs=55.7
Q ss_pred eEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1242 SIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1242 ~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
-|+++||+.+|.+ ..||||||++|++||.|+||||||||||||+++|.++-+|++|+|.
T Consensus 2 mi~i~~l~K~fg~--~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~ 60 (240)
T COG1126 2 MIEIKNLSKSFGD--KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSIT 60 (240)
T ss_pred eEEEEeeeEEeCC--eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEE
Confidence 4899999999964 3699999999999999999999999999999999999999999985
No 434
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.35 E-value=1.2e-12 Score=147.95 Aligned_cols=61 Identities=36% Similarity=0.755 Sum_probs=57.0
Q ss_pred ceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1241 GSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1241 G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+|+|+||+++|+++.+++|+|+||+|++||++||||++|||||||+++|+|+++ ++|+|+
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~ 61 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQ 61 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEE
Confidence 6899999999997655679999999999999999999999999999999999998 789985
No 435
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.35 E-value=1.7e-12 Score=141.55 Aligned_cols=66 Identities=55% Similarity=1.008 Sum_probs=61.5
Q ss_pred CCCcceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1237 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1237 wp~~G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
||..+.|+++|++++|++...++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 66 (207)
T cd03369 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIE 66 (207)
T ss_pred CCCCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEE
Confidence 888999999999999965334799999999999999999999999999999999999999999984
No 436
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.35 E-value=1.5e-12 Score=164.71 Aligned_cols=162 Identities=21% Similarity=0.328 Sum_probs=124.1
Q ss_pred CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceE----E----------EcCeEEEEccCc-ccccccH
Q 000746 655 PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASV----V----------IRGTVAYVPQIS-WIFNATL 719 (1303)
Q Consensus 655 ~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~----~----------~~~~iayv~Q~p-~l~~~Ti 719 (1303)
.+|+||+=-++||.++|++|+||+||||||+.|.|-.. .| .+ . .++.+|||.|++ ++-.-||
T Consensus 805 qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t--~G-~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TV 881 (1391)
T KOG0065|consen 805 QLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKT--GG-YIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTV 881 (1391)
T ss_pred EhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcc--cc-eEEeEEEECCeeCchhhhccccceeecccccCcccch
Confidence 68999999999999999999999999999999999652 22 22 2 346799999976 5668899
Q ss_pred HHHHccCC------CCC-hhh---HHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHH-----------
Q 000746 720 RKNILFGS------EFD-PAK---YWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARA----------- 778 (1303)
Q Consensus 720 reNI~~g~------~~~-~~~---~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARA----------- 778 (1303)
||-+.|.. +.+ +++ .++|++..+|++ --|..||.-|..||.+||.|+.||=-
T Consensus 882 rESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~-------~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFL 954 (1391)
T KOG0065|consen 882 RESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKE-------YADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFL 954 (1391)
T ss_pred HHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchh-------hhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEe
Confidence 99998752 222 333 355665555543 23467899999999999999999843
Q ss_pred -------------HHHHHHhHh-cCCCEEEEEecCCCc--ccccCEEEEEe-CCEEEEecCHHHH
Q 000746 779 -------------VFNSCIKEE-LRGKTRILVTNQLHF--LPHVDRIILVS-EGMIKEEGSFEEL 826 (1303)
Q Consensus 779 -------------l~~~~i~~~-~~~~TvilvtH~~~~--l~~aD~ii~l~-~G~i~~~g~~~~l 826 (1303)
++-+.+++. ..|+||+..-|+++. .+..|+++.|+ +|+.+..|+..+-
T Consensus 955 DEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~ 1019 (1391)
T KOG0065|consen 955 DEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGEN 1019 (1391)
T ss_pred cCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccc
Confidence 222333333 269999999999985 68899999994 7899999987653
No 437
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.33 E-value=1.2e-12 Score=137.55 Aligned_cols=58 Identities=29% Similarity=0.563 Sum_probs=55.3
Q ss_pred EEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+|+|||++|.+ ..+++|+||+|++||.+.++|||||||||+++.+.|+++|++|+|+
T Consensus 2 I~~~nvsk~y~~--~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~ 59 (309)
T COG1125 2 IEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEIL 59 (309)
T ss_pred ceeeeeehhcCC--ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEE
Confidence 799999999973 4699999999999999999999999999999999999999999986
No 438
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.33 E-value=5.8e-12 Score=139.04 Aligned_cols=167 Identities=19% Similarity=0.205 Sum_probs=115.1
Q ss_pred eEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcCeEEEEccCcccccccHHHHH---ccCCCCCh---hhHH
Q 000746 662 LDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRGTVAYVPQISWIFNATLRKNI---LFGSEFDP---AKYW 735 (1303)
Q Consensus 662 l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~~iayv~Q~p~l~~~TireNI---~~g~~~~~---~~~~ 735 (1303)
+.+.+||.++|+|++|+|||||++.+.+.++...+... .+.++.+++-.--..+.+.| .+..+.|+ .++.
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~----~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~ 86 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVY----LIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQ 86 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeE----EEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHH
Confidence 57889999999999999999999999998876432222 24455666433222333333 11222221 1121
Q ss_pred ---HHHHHHh-----------hHHHhhcCCCCCCccccCCCCCCchHH--------HHHHHHHHHHHH------------
Q 000746 736 ---KTVDVSA-----------LQHDLDLLPDRDLTEIGERGVNISGGQ--------KQRVSMARAVFN------------ 781 (1303)
Q Consensus 736 ---~vl~~~~-----------l~~~i~~lp~g~~T~ige~G~~LSGGQ--------kQRiaLARAl~~------------ 781 (1303)
.+.+.+. +-+++..+++++++.+|+.|.++|||| |||+++||++.+
T Consensus 87 ~~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l~T~~~ 166 (249)
T cd01128 87 VAEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTIIATALV 166 (249)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEeeehee
Confidence 1111111 124577899999999999999999999 999999999421
Q ss_pred -------HHHhHhc--CCCEEEEEecCCCcccccCEEEEEeCCEEEEecCHHHHHhcchHHHHHH
Q 000746 782 -------SCIKEEL--RGKTRILVTNQLHFLPHVDRIILVSEGMIKEEGSFEELSKHGRLFQKLM 837 (1303)
Q Consensus 782 -------~~i~~~~--~~~TvilvtH~~~~l~~aD~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~ 837 (1303)
+.+.+.+ .++|.|+++|++....++|.|.+|+.|++ +++++.+++.|..+.
T Consensus 167 d~~~~~~~~i~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr-----~~~ll~~~~~~~~~~ 226 (249)
T cd01128 167 DTGSRMDDVIFEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTR-----KEELLLDPEELQRMW 226 (249)
T ss_pred cCCCcccchHHHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCc-----cchhhCCHHHHHHHH
Confidence 1222222 46899999999999999999999999997 567776666666553
No 439
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.32 E-value=2e-12 Score=137.96 Aligned_cols=59 Identities=27% Similarity=0.447 Sum_probs=55.6
Q ss_pred eEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1242 SIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1242 ~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
.+++++|+.+|.. ..||+||||+|++||.|+||||||||||||++++.|+.+|++|+|.
T Consensus 3 ~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~ 61 (248)
T COG1116 3 LLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVL 61 (248)
T ss_pred eEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 5899999999975 4799999999999999999999999999999999999999999975
No 440
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.31 E-value=2.3e-12 Score=139.58 Aligned_cols=59 Identities=32% Similarity=0.599 Sum_probs=56.1
Q ss_pred eEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1242 SIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1242 ~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
.|+++|++++|+.+ +||+||||+|++||.+|||||.|||||||+++++++..|.+|+|.
T Consensus 4 ~i~v~nl~v~y~~~--~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~ 62 (254)
T COG1121 4 MIEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIK 62 (254)
T ss_pred EEEEeeeEEEECCE--eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEE
Confidence 59999999999754 599999999999999999999999999999999999999999986
No 441
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.31 E-value=3.8e-12 Score=134.28 Aligned_cols=127 Identities=25% Similarity=0.259 Sum_probs=80.7
Q ss_pred eeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEEEcC-e-E--EEEccCcccccccHHHHHccCCCCChhhH
Q 000746 659 NINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVVIRG-T-V--AYVPQISWIFNATLRKNILFGSEFDPAKY 734 (1303)
Q Consensus 659 ~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~~~~-~-i--ayv~Q~p~l~~~TireNI~~g~~~~~~~~ 734 (1303)
+..+...++.+.+|+||||||||+++.+|.-.+. |.....+. . . .+-...++--+++|+ |.|
T Consensus 14 ~~~~~~~~~~~~~i~G~NGsGKSnil~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~f--------- 79 (178)
T cd03239 14 DETVVGGSNSFNAIVGPNGSGKSNIVDAICFVLG---GKAAKLRRGSLLFLAGGGVKAGINSASVE--ITF--------- 79 (178)
T ss_pred CCEEecCCCceEEEECCCCCCHHHHHHHHHHHcC---cccccccCcchhhhcccccCCCCceEEEE--EEE---------
Confidence 3344444444999999999999999999864332 11111110 0 0 011111111111111 111
Q ss_pred HHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHH---------------------------HHHhHh
Q 000746 735 WKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFN---------------------------SCIKEE 787 (1303)
Q Consensus 735 ~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~---------------------------~~i~~~ 787 (1303)
+..+..+|+|+.|++ ||||||||++||||+.. +.+.+.
T Consensus 80 ---------~~~~~~~~~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~ 144 (178)
T cd03239 80 ---------DKSYFLVLQGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEM 144 (178)
T ss_pred ---------ECceEEecCCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 223778999999998 99999999999998631 123333
Q ss_pred c-CCCEEEEEecCCCcccccCEEEEEeC
Q 000746 788 L-RGKTRILVTNQLHFLPHVDRIILVSE 814 (1303)
Q Consensus 788 ~-~~~TvilvtH~~~~l~~aD~ii~l~~ 814 (1303)
. +++|+|++||+.+.+..+|+++.++.
T Consensus 145 ~~~g~tiIiiSH~~~~~~~adrvi~i~~ 172 (178)
T cd03239 145 AKHTSQFIVITLKKEMFENADKLIGVLF 172 (178)
T ss_pred HhCCCEEEEEECCHHHHhhCCeEEEEEE
Confidence 2 35899999999999999999999964
No 442
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.29 E-value=1.9e-11 Score=131.55 Aligned_cols=138 Identities=12% Similarity=0.113 Sum_probs=86.6
Q ss_pred cceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCC-----Cce----E---EEcCeEEEEccCcccccccHHHHHc
Q 000746 657 LSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLK-----DAS----V---VIRGTVAYVPQISWIFNATLRKNIL 724 (1303)
Q Consensus 657 L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~-----g~~----~---~~~~~iayv~Q~p~l~~~TireNI~ 724 (1303)
++++++++.+| +.+|+||||||||||+.+|.-.+.... |.. + .....|.+..|+.-++. |
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~-- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----N-- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC-----C--
Confidence 46778888887 889999999999999999874332211 110 0 01234666666654443 2
Q ss_pred cCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHH----H-------------------
Q 000746 725 FGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVF----N------------------- 781 (1303)
Q Consensus 725 ~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~----~------------------- 781 (1303)
+..... ....++.++. . ....+...+||||||||++||||+. .
T Consensus 84 ---~~~~~~------~~~~~~~l~~-~----~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~ 149 (198)
T cd03276 84 ---PLCVLS------QDMARSFLTS-N----KAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNR 149 (198)
T ss_pred ---cCCHHH------HHHHHHHhcc-c----cccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHH
Confidence 111111 1122222322 1 1123456789999999999999872 1
Q ss_pred ----HHHhHhcC----CCEEEEEecCCCcccccCEEEEEeCCE
Q 000746 782 ----SCIKEELR----GKTRILVTNQLHFLPHVDRIILVSEGM 816 (1303)
Q Consensus 782 ----~~i~~~~~----~~TvilvtH~~~~l~~aD~ii~l~~G~ 816 (1303)
+.+.+..+ ++|++++||+++.+...|+|-+|..|+
T Consensus 150 ~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 150 KISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 22333322 358999999999999999999998753
No 443
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=2.8e-12 Score=147.01 Aligned_cols=177 Identities=23% Similarity=0.348 Sum_probs=112.5
Q ss_pred CCcEEEEeeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhc---CCCCCCCceEEEcCeEEEEccCccc
Q 000746 638 LPAVSIKNGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLG---ELPPLKDASVVIRGTVAYVPQISWI 714 (1303)
Q Consensus 638 ~~~i~~~~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg---~~~~~~g~~~~~~~~iayv~Q~p~l 714 (1303)
..+|.+++.+.+|.+ +..|++-++++..|..+++||+||+|||||+++|.. ..-|.+.. +++.-....|+ -+
T Consensus 78 ~~Di~~~~fdLa~G~-k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE---~~g~~t~~~~~-~l 152 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGG-KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQE---VRGDDTEALQS-VL 152 (582)
T ss_pred ccceeeeeeeeeecc-hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhh---eeccchHHHhh-hh
Confidence 346888899999975 468999999999999999999999999999999997 11111110 11111111111 12
Q ss_pred ccccHHHHHccCC-CC----C-hhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHHHHHHHHHH-----
Q 000746 715 FNATLRKNILFGS-EF----D-PAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSMARAVFNSC----- 783 (1303)
Q Consensus 715 ~~~TireNI~~g~-~~----~-~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~~~----- 783 (1303)
-.++-|.-.+.-. +. + ++-|.+++.-.+..++....|- .+||||=|-|++||||+|.+.
T Consensus 153 ~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt----------~slSGGWrMrlaLARAlf~~pDlLLL 222 (582)
T KOG0062|consen 153 ESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPT----------KSLSGGWRMRLALARALFAKPDLLLL 222 (582)
T ss_pred hccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccc----------cccCcchhhHHHHHHHHhcCCCEEee
Confidence 2233333332211 00 1 1122224444444444444442 469999999999999987531
Q ss_pred --------------HhHhc--CCCEEEEEecCCCcccc-cCEEEEEeCCEEE-EecCHHHHHhc
Q 000746 784 --------------IKEEL--RGKTRILVTNQLHFLPH-VDRIILVSEGMIK-EEGSFEELSKH 829 (1303)
Q Consensus 784 --------------i~~~~--~~~TvilvtH~~~~l~~-aD~ii~l~~G~i~-~~g~~~~l~~~ 829 (1303)
+.+.+ ...|+|+|+|+-.++.. |..||.+++-++. ..|++++..+.
T Consensus 223 DEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk~ 286 (582)
T KOG0062|consen 223 DEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVKT 286 (582)
T ss_pred cCCcccchhHHHHHHHHHHhhCCceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHHh
Confidence 22333 24799999999999976 7888888876653 46777776543
No 444
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.27 E-value=5.7e-12 Score=137.38 Aligned_cols=59 Identities=32% Similarity=0.642 Sum_probs=55.6
Q ss_pred eEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1242 SIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1242 ~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
.++.+|++|+|+. .++|+|+||+|++||.++|+||.|||||||+++|.|+..|.+|+|+
T Consensus 2 ~L~~~~ls~~y~~--~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~ 60 (258)
T COG1120 2 MLEVENLSFGYGG--KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVL 60 (258)
T ss_pred eeEEEEEEEEECC--eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEE
Confidence 4789999999963 5799999999999999999999999999999999999999999985
No 445
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.27 E-value=6.8e-12 Score=134.06 Aligned_cols=60 Identities=30% Similarity=0.420 Sum_probs=54.7
Q ss_pred EEEEEEEEEeCCCC--CCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPEL--PPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~--~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+++||+..|..+. .++|+|+||+|++||.|||+||||||||||+++|-++-.|++|.|.
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~ 63 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVL 63 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEE
Confidence 67999999996443 3699999999999999999999999999999999999999999964
No 446
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.26 E-value=6.6e-12 Score=137.87 Aligned_cols=60 Identities=37% Similarity=0.577 Sum_probs=55.5
Q ss_pred EEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+++|++++|+++..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 61 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIR 61 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 789999999964334699999999999999999999999999999999999999999985
No 447
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.26 E-value=6.9e-12 Score=132.48 Aligned_cols=61 Identities=23% Similarity=0.406 Sum_probs=55.7
Q ss_pred eEEEEEEEEEeCCCC--CCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1242 SIKFEDVVLRYRPEL--PPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1242 ~I~f~nVsf~Y~~~~--~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
-++.+|+++.|+... .++||||||+|.+||++||||+||||||||.++|.++-.|++|+|+
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~ 65 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSIL 65 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEE
Confidence 478999999996432 1599999999999999999999999999999999999999999985
No 448
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.26 E-value=1e-11 Score=143.64 Aligned_cols=62 Identities=16% Similarity=0.299 Sum_probs=56.7
Q ss_pred ceEEEEEEEEEeCCC---CCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1241 GSIKFEDVVLRYRPE---LPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1241 G~I~f~nVsf~Y~~~---~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
.-|+++||+|+|++. ..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~ 84 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQ 84 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEE
Confidence 359999999999643 23699999999999999999999999999999999999999999985
No 449
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.26 E-value=6.6e-12 Score=138.29 Aligned_cols=60 Identities=25% Similarity=0.465 Sum_probs=55.2
Q ss_pred EEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+++||+++|+++..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 60 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 579999999964324799999999999999999999999999999999999999999985
No 450
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.25 E-value=1e-11 Score=136.93 Aligned_cols=62 Identities=65% Similarity=1.125 Sum_probs=57.7
Q ss_pred ceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1241 GSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1241 G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+|+++|++++|+++..++|+|+||+|++||.+||+|++|||||||+++|.|++.|++|+|.
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 62 (221)
T cd03244 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSIL 62 (221)
T ss_pred CcEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEE
Confidence 57999999999975445799999999999999999999999999999999999999999985
No 451
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.25 E-value=9.3e-12 Score=132.16 Aligned_cols=60 Identities=30% Similarity=0.544 Sum_probs=55.4
Q ss_pred EEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+++|++++|+...+++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~ 60 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEE
Confidence 579999999965434799999999999999999999999999999999999999999985
No 452
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.25 E-value=9e-12 Score=135.38 Aligned_cols=60 Identities=27% Similarity=0.443 Sum_probs=55.9
Q ss_pred EEEEEEEEEeCCC---CCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPE---LPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~---~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+|+||+..|... ..++|+||||+|++||..||||+||||||||++++-|+-+|++|+|.
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~ 64 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVF 64 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEE
Confidence 8999999999752 24699999999999999999999999999999999999999999985
No 453
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.24 E-value=8.7e-12 Score=130.16 Aligned_cols=58 Identities=26% Similarity=0.505 Sum_probs=54.3
Q ss_pred EEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+++||+++|++ .++|+|+||+|+|||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 1 l~~~~l~~~~~~--~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~ 58 (163)
T cd03216 1 LELRGITKRFGG--VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL 58 (163)
T ss_pred CEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence 579999999964 3699999999999999999999999999999999999999999875
No 454
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.24 E-value=1e-11 Score=130.06 Aligned_cols=59 Identities=31% Similarity=0.466 Sum_probs=54.9
Q ss_pred EEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+++|++++|+++ +++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.
T Consensus 1 i~~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 59 (166)
T cd03223 1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIG 59 (166)
T ss_pred CEEEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 5799999999643 4699999999999999999999999999999999999999999985
No 455
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.23 E-value=9.9e-12 Score=130.54 Aligned_cols=60 Identities=25% Similarity=0.509 Sum_probs=56.4
Q ss_pred ceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1241 GSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1241 G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
--|++++|+++|.+ ..||+||||+|++||.+||+|+||||||||++++.++..|++|+|.
T Consensus 7 ~~I~vr~v~~~fG~--~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~ 66 (263)
T COG1127 7 PLIEVRGVTKSFGD--RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEIL 66 (263)
T ss_pred ceEEEeeeeeecCC--EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEE
Confidence 36999999999954 4699999999999999999999999999999999999999999985
No 456
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.23 E-value=1.1e-11 Score=136.40 Aligned_cols=60 Identities=32% Similarity=0.445 Sum_probs=54.9
Q ss_pred EEEEEEEEEeCCCC--CCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPEL--PPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~--~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+++||+++|+++. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~ 62 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVR 62 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEE
Confidence 57899999996421 4699999999999999999999999999999999999999999985
No 457
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.22 E-value=1.5e-11 Score=140.61 Aligned_cols=61 Identities=23% Similarity=0.477 Sum_probs=55.8
Q ss_pred eEEEEEEEEEeCCCC---CCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1242 SIKFEDVVLRYRPEL---PPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1242 ~I~f~nVsf~Y~~~~---~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
.|+++||+++|+++. .++|+||||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~ 65 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVT 65 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 389999999996432 3699999999999999999999999999999999999999999985
No 458
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.22 E-value=1.7e-11 Score=138.18 Aligned_cols=64 Identities=44% Similarity=0.756 Sum_probs=59.2
Q ss_pred CcceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1239 SSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1239 ~~G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
..|.|+++|++++|++...++|+|+||+|+|||.+||+|++|||||||+++|.|+++|++|+|+
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 79 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIV 79 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEE
Confidence 5689999999999965434799999999999999999999999999999999999999999985
No 459
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.22 E-value=1.7e-11 Score=129.42 Aligned_cols=60 Identities=32% Similarity=0.665 Sum_probs=55.4
Q ss_pred EEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+++|++++|+++..++++|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~ 60 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEE
Confidence 579999999975434699999999999999999999999999999999999999999985
No 460
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.21 E-value=1.5e-11 Score=134.83 Aligned_cols=59 Identities=31% Similarity=0.478 Sum_probs=54.6
Q ss_pred EEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+++|++++|+.+ +++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 59 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIR 59 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence 5789999999643 4699999999999999999999999999999999999999999984
No 461
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.21 E-value=1.8e-11 Score=140.00 Aligned_cols=60 Identities=30% Similarity=0.547 Sum_probs=55.4
Q ss_pred EEEEEEEEEeCCCC---CCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPEL---PPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~---~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+|+||+++|+++. +++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|+
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 64 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVT 64 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEE
Confidence 78999999996432 2699999999999999999999999999999999999999999985
No 462
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.21 E-value=1.7e-11 Score=136.24 Aligned_cols=61 Identities=31% Similarity=0.544 Sum_probs=56.2
Q ss_pred eEEEEEEEEEeCCCC--CCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1242 SIKFEDVVLRYRPEL--PPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1242 ~I~f~nVsf~Y~~~~--~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
-|+++||+++|+++. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 67 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVI 67 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence 489999999996432 4699999999999999999999999999999999999999999985
No 463
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.21 E-value=1.9e-11 Score=132.93 Aligned_cols=60 Identities=33% Similarity=0.448 Sum_probs=55.5
Q ss_pred EEEEEEEEEeCCCC---CCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPEL---PPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~---~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+++||+++|++.. +++|+|+||+|++||.++|+|++|||||||+++|.|+++|++|+|.
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~ 63 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVS 63 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEE
Confidence 57999999997542 3699999999999999999999999999999999999999999986
No 464
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.21 E-value=2.1e-11 Score=133.77 Aligned_cols=59 Identities=29% Similarity=0.490 Sum_probs=54.9
Q ss_pred EEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+++|++++|+++ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 2 l~~~~l~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~ 60 (214)
T TIGR02673 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR 60 (214)
T ss_pred EEEEeeeEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 7899999999533 4799999999999999999999999999999999999999999985
No 465
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.20 E-value=1.9e-11 Score=124.61 Aligned_cols=58 Identities=33% Similarity=0.621 Sum_probs=54.2
Q ss_pred EEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
++++|++++|.+ .++|+|+||++++||.++|+|++|||||||+++|.|+++|++|+|.
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~ 58 (144)
T cd03221 1 IELENLSKTYGG--KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVT 58 (144)
T ss_pred CEEEEEEEEECC--ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEE
Confidence 478999999964 3699999999999999999999999999999999999999999985
No 466
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.20 E-value=2.1e-11 Score=135.19 Aligned_cols=60 Identities=23% Similarity=0.523 Sum_probs=55.0
Q ss_pred EEEEEEEEEeCCCC--CCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPEL--PPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~--~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+++||+++|++.. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 63 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSII 63 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 78999999996431 2699999999999999999999999999999999999999999985
No 467
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.20 E-value=2.3e-11 Score=133.77 Aligned_cols=60 Identities=33% Similarity=0.557 Sum_probs=55.0
Q ss_pred EEEEEEEEEeCCCC--CCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPEL--PPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~--~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+++||+++|++.. +++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 63 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFAT 63 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEE
Confidence 78999999996431 1699999999999999999999999999999999999999999985
No 468
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.20 E-value=2.4e-11 Score=132.62 Aligned_cols=60 Identities=28% Similarity=0.517 Sum_probs=57.1
Q ss_pred eEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1242 SIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1242 ~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
-|+++|++|+|.++ .++|+|+||+|++||.++|+|+||||||||+++|.+++.|++|+|.
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~ 62 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVL 62 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEE
Confidence 58999999999876 6899999999999999999999999999999999999999999984
No 469
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.20 E-value=2.1e-11 Score=132.19 Aligned_cols=61 Identities=28% Similarity=0.427 Sum_probs=55.8
Q ss_pred eEEEEEEEEEeCCC--CCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhccc---CCCCeee
Q 000746 1242 SIKFEDVVLRYRPE--LPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVE---LERGENI 1302 (1303)
Q Consensus 1242 ~I~f~nVsf~Y~~~--~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd---~~~G~I~ 1302 (1303)
.+.++||+|.|+.+ ..++|+|+||+|++||.+||+|++|||||||+++|.|+++ |++|+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~ 68 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIH 68 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEE
Confidence 46899999999743 4579999999999999999999999999999999999999 8999885
No 470
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.19 E-value=2.5e-11 Score=138.28 Aligned_cols=61 Identities=28% Similarity=0.520 Sum_probs=56.0
Q ss_pred eEEEEEEEEEeCCC-CCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1242 SIKFEDVVLRYRPE-LPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1242 ~I~f~nVsf~Y~~~-~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
-|+++||+++|+.. ..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 65 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQII 65 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 48999999999642 24699999999999999999999999999999999999999999985
No 471
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.19 E-value=2.6e-11 Score=138.75 Aligned_cols=60 Identities=28% Similarity=0.501 Sum_probs=55.5
Q ss_pred EEEEEEEEEeCCCC---CCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPEL---PPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~---~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+++||+++|++.. .++|+||||+|++||.+||||++|||||||+++|.|+++|++|+|.
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~ 65 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKII 65 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEE
Confidence 89999999996432 3699999999999999999999999999999999999999999985
No 472
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.19 E-value=3.3e-11 Score=132.78 Aligned_cols=62 Identities=35% Similarity=0.632 Sum_probs=57.0
Q ss_pred ceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1241 GSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1241 G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+|+++|++++|+....++|+|+||+|++||.+||+|++|||||||+++|.++++|++|+|.
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~ 62 (220)
T cd03245 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVL 62 (220)
T ss_pred CeEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEE
Confidence 57999999999964334699999999999999999999999999999999999999999985
No 473
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.19 E-value=2.6e-11 Score=135.24 Aligned_cols=60 Identities=42% Similarity=0.765 Sum_probs=55.6
Q ss_pred EEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+++||+++|+.+..++|+|+||+|++||.+||+|++|||||||+++|.|++.|++|+|.
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 60 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE
Confidence 579999999965445799999999999999999999999999999999999999999985
No 474
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.19 E-value=2.7e-11 Score=131.23 Aligned_cols=58 Identities=24% Similarity=0.533 Sum_probs=54.6
Q ss_pred EEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+++||+++|.+ .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~ 59 (200)
T PRK13540 2 LDVIELDFDYHD--QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEIL 59 (200)
T ss_pred EEEEEEEEEeCC--eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEE
Confidence 789999999964 3699999999999999999999999999999999999999999985
No 475
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.19 E-value=2.7e-11 Score=137.70 Aligned_cols=60 Identities=35% Similarity=0.546 Sum_probs=55.8
Q ss_pred eEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1242 SIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1242 ~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
-|+++||+++|+.+ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 4 ~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 63 (274)
T PRK13647 4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVK 63 (274)
T ss_pred eEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEE
Confidence 48999999999633 4699999999999999999999999999999999999999999985
No 476
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.19 E-value=2.6e-11 Score=140.87 Aligned_cols=60 Identities=23% Similarity=0.438 Sum_probs=55.4
Q ss_pred EEEEEEEEEeCCC--CCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPE--LPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~--~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+++||+++|+.+ ..++|+||||+|++||.+||+|+||||||||+++|.|+++|++|+|.
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~ 63 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVI 63 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence 7999999999632 24699999999999999999999999999999999999999999985
No 477
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.18 E-value=2.8e-11 Score=133.45 Aligned_cols=60 Identities=35% Similarity=0.546 Sum_probs=55.1
Q ss_pred EEEEEEEEEeCCCC--CCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPEL--PPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~--~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+++||+++|+++. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~ 63 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVL 63 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 68999999996421 3699999999999999999999999999999999999999999985
No 478
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.18 E-value=2.3e-11 Score=133.87 Aligned_cols=60 Identities=27% Similarity=0.419 Sum_probs=54.7
Q ss_pred EEEEEEEEEeCCCC--CCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPEL--PPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~--~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+++|++++|+++. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 62 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVL 62 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 57899999996421 4699999999999999999999999999999999999999999985
No 479
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.18 E-value=3.3e-11 Score=138.53 Aligned_cols=61 Identities=25% Similarity=0.455 Sum_probs=55.8
Q ss_pred eEEEEEEEEEeCCCC---CCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1242 SIKFEDVVLRYRPEL---PPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1242 ~I~f~nVsf~Y~~~~---~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
.|+++||+++|+++. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~ 65 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIE 65 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEE
Confidence 389999999996432 2699999999999999999999999999999999999999999984
No 480
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.18 E-value=3.3e-11 Score=133.55 Aligned_cols=61 Identities=21% Similarity=0.370 Sum_probs=56.0
Q ss_pred eEEEEEEEEEeCCCC--CCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1242 SIKFEDVVLRYRPEL--PPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1242 ~I~f~nVsf~Y~~~~--~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
-|+++|++++|+++. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~ 68 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVS 68 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEE
Confidence 599999999996532 2599999999999999999999999999999999999999999985
No 481
>PRK10908 cell division protein FtsE; Provisional
Probab=99.18 E-value=3.1e-11 Score=133.15 Aligned_cols=59 Identities=32% Similarity=0.522 Sum_probs=54.9
Q ss_pred EEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+++||+++|+++ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 60 (222)
T PRK10908 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIW 60 (222)
T ss_pred EEEEeeEEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 7899999999533 4799999999999999999999999999999999999999999985
No 482
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.18 E-value=3.7e-11 Score=137.87 Aligned_cols=63 Identities=27% Similarity=0.417 Sum_probs=57.6
Q ss_pred cceEEEEEEEEEeCCCC---CCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1240 SGSIKFEDVVLRYRPEL---PPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1240 ~G~I~f~nVsf~Y~~~~---~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
.|.|+++|++++|++.. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 69 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTI 69 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 47899999999996432 2599999999999999999999999999999999999999999985
No 483
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.18 E-value=1e-10 Score=156.45 Aligned_cols=80 Identities=18% Similarity=0.234 Sum_probs=65.0
Q ss_pred CCCCCCccccCCCCCCchHHHHHHHHHHHHHH--------------------------HHHhHhc-CCCEEEEEecCCCc
Q 000746 750 LPDRDLTEIGERGVNISGGQKQRVSMARAVFN--------------------------SCIKEEL-RGKTRILVTNQLHF 802 (1303)
Q Consensus 750 lp~g~~T~ige~G~~LSGGQkQRiaLARAl~~--------------------------~~i~~~~-~~~TvilvtH~~~~ 802 (1303)
..-|+.+ +|..-.+|||||.|||-||+-+.+ +++.+.. +|.|||+|.|+++.
T Consensus 1686 vGLgYl~-LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~~~ 1764 (1809)
T PRK00635 1686 NGLGYLP-LGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDPAL 1764 (1809)
T ss_pred cCCCeee-CCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 3445654 788899999999999999998532 1223322 68999999999999
Q ss_pred ccccCEEEEE------eCCEEEEecCHHHHHhcc
Q 000746 803 LPHVDRIILV------SEGMIKEEGSFEELSKHG 830 (1303)
Q Consensus 803 l~~aD~ii~l------~~G~i~~~g~~~~l~~~~ 830 (1303)
+..||+|+-| +.|+|+.+|+++++.+..
T Consensus 1765 i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~~~ 1798 (1809)
T PRK00635 1765 LKQADYLIEMGPGSGKTGGKILFSGPPKDISASK 1798 (1809)
T ss_pred HHhCCEEEEcCCCcccCCCEEEEEeCHHHHhhCC
Confidence 9999999999 368999999999998654
No 484
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.18 E-value=3e-11 Score=131.54 Aligned_cols=58 Identities=24% Similarity=0.388 Sum_probs=54.7
Q ss_pred EEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+++||+++|++ ..+|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|+
T Consensus 3 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 60 (207)
T PRK13539 3 LEGEDLACVRGG--RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIK 60 (207)
T ss_pred EEEEeEEEEECC--eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 799999999964 3699999999999999999999999999999999999999999985
No 485
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.18 E-value=3.2e-11 Score=137.01 Aligned_cols=61 Identities=31% Similarity=0.487 Sum_probs=56.7
Q ss_pred eEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1242 SIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1242 ~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
.|+++|++++|+++..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~ 67 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIK 67 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 5999999999964445799999999999999999999999999999999999999999985
No 486
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.18 E-value=3e-11 Score=136.92 Aligned_cols=59 Identities=24% Similarity=0.427 Sum_probs=55.5
Q ss_pred eEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1242 SIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1242 ~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
.|+++||+.+|.+. . ||+|+||+|+.||.++|||||||||||++++|.++.+|++|+|.
T Consensus 3 ~i~l~~v~K~yg~~-~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~ 61 (338)
T COG3839 3 ELELKNVRKSFGSF-E-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL 61 (338)
T ss_pred EEEEeeeEEEcCCc-e-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 69999999999643 2 99999999999999999999999999999999999999999985
No 487
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.18 E-value=2.7e-11 Score=128.41 Aligned_cols=45 Identities=36% Similarity=0.572 Sum_probs=43.7
Q ss_pred CccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1258 PVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1258 ~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
++||||||++++||++||||+.|||||||+++|.+.|+|++|+|.
T Consensus 41 ~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~ 85 (249)
T COG1134 41 WALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVK 85 (249)
T ss_pred EEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEE
Confidence 699999999999999999999999999999999999999999974
No 488
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.18 E-value=4.1e-11 Score=135.23 Aligned_cols=154 Identities=25% Similarity=0.318 Sum_probs=110.7
Q ss_pred eeEEEeCCCCCccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCce--------------------------
Q 000746 645 NGNFSWDSKSPTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDAS-------------------------- 698 (1303)
Q Consensus 645 ~~~f~~~~~~~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~-------------------------- 698 (1303)
++.-+|..+...|.++- ..++|+.++|+|+||-||||-++.|.|++.|.=|..
T Consensus 79 e~vHRYg~NgFkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~ 157 (591)
T COG1245 79 EVVHRYGVNGFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLY 157 (591)
T ss_pred cceeeccCCceEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHH
Confidence 45666765544343322 346899999999999999999999999999865521
Q ss_pred ---EEEcCeEEEEccCcccccccHHHHHccCCCCChhhHHHHHHHHhhHHHhhcCCCCCCccccCCCCCCchHHHHHHHH
Q 000746 699 ---VVIRGTVAYVPQISWIFNATLRKNILFGSEFDPAKYWKTVDVSALQHDLDLLPDRDLTEIGERGVNISGGQKQRVSM 775 (1303)
Q Consensus 699 ---~~~~~~iayv~Q~p~l~~~TireNI~~g~~~~~~~~~~vl~~~~l~~~i~~lp~g~~T~ige~G~~LSGGQkQRiaL 775 (1303)
+..-.++-||.--|-.+.|+++|-+.--.+ .....++++..+|+.-++ ..-..||||+-||+||
T Consensus 158 ~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de--~g~~devve~l~L~nvl~-----------r~v~~LSGGELQr~aI 224 (591)
T COG1245 158 EGELRAVHKPQYVDLIPKVVKGKVGELLKKVDE--RGKFDEVVERLGLENVLD-----------RDVSELSGGELQRVAI 224 (591)
T ss_pred cCCcceecchHHHHHHHHHhcchHHHHHHhhhh--cCcHHHHHHHhcchhhhh-----------hhhhhcCchHHHHHHH
Confidence 111234667777888899999998753211 235566777666655432 2345699999999999
Q ss_pred HHHHHH-----------------------HHHhHhcC-CCEEEEEecCCCcccc-cCEEEEE
Q 000746 776 ARAVFN-----------------------SCIKEELR-GKTRILVTNQLHFLPH-VDRIILV 812 (1303)
Q Consensus 776 ARAl~~-----------------------~~i~~~~~-~~TvilvtH~~~~l~~-aD~ii~l 812 (1303)
|-|+.+ +.+++..+ +++||+|-|++..+.. +|.|-++
T Consensus 225 aa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~ 286 (591)
T COG1245 225 AAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHIL 286 (591)
T ss_pred HHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEE
Confidence 999643 34566666 7999999999999987 7887776
No 489
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.18 E-value=3e-11 Score=113.90 Aligned_cols=63 Identities=25% Similarity=0.351 Sum_probs=52.9
Q ss_pred CccceeeeEecCCcEEEEEcCCCCChHHHHHHHhcCCCCCCCceEE------------EcCeEEEEccCcccccccHHHH
Q 000746 655 PTLSNINLDIPVGSLVAIVGGTGEGKTSLVSAMLGELPPLKDASVV------------IRGTVAYVPQISWIFNATLRKN 722 (1303)
Q Consensus 655 ~~L~~i~l~i~~G~~~~ivG~sGsGKSTLl~~llg~~~~~~g~~~~------------~~~~iayv~Q~p~l~~~TireN 722 (1303)
++|++++|++++|+.++|+||||||||||++++. +|.... .++.++|+||+ +|.+|||||
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~N 74 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRLN 74 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHhh
Confidence 5899999999999999999999999999999986 332211 23447888888 999999999
Q ss_pred Hcc
Q 000746 723 ILF 725 (1303)
Q Consensus 723 I~~ 725 (1303)
|.+
T Consensus 75 i~~ 77 (107)
T cd00820 75 IFL 77 (107)
T ss_pred cee
Confidence 988
No 490
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.18 E-value=3.1e-11 Score=136.69 Aligned_cols=60 Identities=32% Similarity=0.597 Sum_probs=55.4
Q ss_pred EEEEEEEEEeCCC-------CCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPE-------LPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~-------~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+++||+++|+++ ..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 69 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVS 69 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 7899999999631 34799999999999999999999999999999999999999999985
No 491
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.18 E-value=3.1e-11 Score=135.13 Aligned_cols=59 Identities=31% Similarity=0.575 Sum_probs=54.9
Q ss_pred EEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+++||+++|+++ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 2 l~~~~l~~~~~~~-~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 60 (243)
T TIGR02315 2 LEVENLSKVYPNG-KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSIL 60 (243)
T ss_pred eEEEeeeeecCCC-cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEE
Confidence 7899999999623 4699999999999999999999999999999999999999999985
No 492
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.18 E-value=2.5e-11 Score=132.74 Aligned_cols=59 Identities=31% Similarity=0.504 Sum_probs=53.9
Q ss_pred EEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1244 KFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1244 ~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
+++|++++|+++..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~ 59 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 47899999964324699999999999999999999999999999999999999999985
No 493
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.18 E-value=1.9e-11 Score=120.79 Aligned_cols=61 Identities=28% Similarity=0.400 Sum_probs=53.6
Q ss_pred eEEEEEEEEEeCCC--CCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1242 SIKFEDVVLRYRPE--LPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1242 ~I~f~nVsf~Y~~~--~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
-|+.++++..-+.+ .-++||||+|.|++||+|||||+||||||||+..|.++-+|++|+|.
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~ 68 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVR 68 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEE
Confidence 47788887766433 23699999999999999999999999999999999999999999984
No 494
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.17 E-value=3.9e-11 Score=134.65 Aligned_cols=59 Identities=31% Similarity=0.504 Sum_probs=55.6
Q ss_pred eEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1242 SIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1242 ~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
.|+++|++++|+. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.
T Consensus 12 ~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~ 70 (257)
T PRK11247 12 PLLLNAVSKRYGE--RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELL 70 (257)
T ss_pred cEEEEEEEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEE
Confidence 5999999999963 4699999999999999999999999999999999999999999985
No 495
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.17 E-value=3.1e-11 Score=134.16 Aligned_cols=60 Identities=27% Similarity=0.479 Sum_probs=55.0
Q ss_pred EEEEEEEEEeCCC--CCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPE--LPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~--~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+++|++++|++. ..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~ 63 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVL 63 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 7899999999642 12799999999999999999999999999999999999999999985
No 496
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.17 E-value=3.3e-11 Score=127.30 Aligned_cols=58 Identities=28% Similarity=0.545 Sum_probs=54.0
Q ss_pred EEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
++++|++++|+. .++|+|+||++++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~ 58 (173)
T cd03230 1 IEVRNLSKRYGK--KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK 58 (173)
T ss_pred CEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence 478999999963 3699999999999999999999999999999999999999999984
No 497
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.17 E-value=3.9e-11 Score=136.25 Aligned_cols=61 Identities=28% Similarity=0.532 Sum_probs=56.6
Q ss_pred eEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1242 SIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1242 ~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
.|+++|++++|+++..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~ 67 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIF 67 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence 5999999999975434699999999999999999999999999999999999999999985
No 498
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.17 E-value=4.3e-11 Score=128.83 Aligned_cols=61 Identities=30% Similarity=0.419 Sum_probs=56.3
Q ss_pred eEEEEEEEEEeCCC----CCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcc--cCCCCeee
Q 000746 1242 SIKFEDVVLRYRPE----LPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIV--ELERGENI 1302 (1303)
Q Consensus 1242 ~I~f~nVsf~Y~~~----~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~y--d~~~G~I~ 1302 (1303)
.|+++||+++|+.. ..++|+|+||+|++||.+||+|++|||||||+++|.|++ +|++|+|.
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~ 69 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVL 69 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEE
Confidence 58999999999642 247999999999999999999999999999999999999 99999985
No 499
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.17 E-value=4.5e-11 Score=132.53 Aligned_cols=61 Identities=41% Similarity=0.825 Sum_probs=56.5
Q ss_pred ceEEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1241 GSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1241 G~I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+|+++|++++|.++ .++|+|+||+|++||.+||+|++|||||||+++|.+++.|++|+|.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 61 (229)
T cd03254 1 GEIEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQIL 61 (229)
T ss_pred CeEEEEEEEEecCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE
Confidence 579999999999632 3699999999999999999999999999999999999999999985
No 500
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.17 E-value=3.8e-11 Score=134.99 Aligned_cols=58 Identities=22% Similarity=0.480 Sum_probs=54.6
Q ss_pred EEEEEEEEEeCCCCCCccccceeeecCCCEEEEECCCCCCHHHHHHHHhhcccCCCCeee
Q 000746 1243 IKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGIVGRTGAGKSSMLNALFRIVELERGENI 1302 (1303)
Q Consensus 1243 I~f~nVsf~Y~~~~~~VLk~Isl~I~~GekVaIVGrTGSGKSTLi~lL~R~yd~~~G~I~ 1302 (1303)
|+++|++++|++ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.
T Consensus 2 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 59 (255)
T PRK11248 2 LQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSIT 59 (255)
T ss_pred EEEEEEEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 789999999953 4699999999999999999999999999999999999999999985
Done!