BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000748
(1303 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BIY|A Chain A, Crystal Structure Of P300 Histone Acetyltransferase Domain
In Complex With A Bisubstrate Inhibitor, Lys-Coa
Length = 380
Score = 214 bits (545), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 147/431 (34%), Positives = 214/431 (49%), Gaps = 88/431 (20%)
Query: 703 FAAKDLPSTMLSDHLEQRL--FTRIQEERKMKANVSGKNLDEVPTAEDXXXXXXXXXXXX 760
F+AK LPST L LE R+ F R Q + SG+ V A D
Sbjct: 2 FSAKRLPSTRLGTFLENRVNDFLRRQNHPE-----SGEVTVRVVHASDKTVEVKPGMKA- 55
Query: 761 XXXXQQFLDIFHEANYPTEFPYRLKVILLFQKIEGVDVCLFGMYVQEFGSECSHPNQRCV 820
+F+D FPYR K + F++I+GVD+C FGM+VQE+GS+C PNQR V
Sbjct: 56 -----RFVD---SGEMAESFPYRTKALFAFEEIDGVDLCFFGMHVQEYGSDCPPPNQRRV 107
Query: 821 YISYLDSVKYFRPETETAAGKTLRTFVYHEILIGYLEYSKKRGFATCYIWACPPVKGEDY 880
YISYLDSV +FRP K LRT VYHEILIGYLEY KK G+ T +IWACPP +G+DY
Sbjct: 108 YISYLDSVHFFRP-------KCLRTAVYHEILIGYLEYVKKLGYTTGHIWACPPSEGDDY 160
Query: 881 ILYCHPEMQKTPKSDKLRQWYRSMLRKAAEEKIVVGISNLYDQFFIPTGQHSKVTAAR-L 939
I +CHP QK PK +L++WY+ ML KA E+IV +++ Q ++T+A+ L
Sbjct: 161 IFHCHPPDQKIPKPKRLQEWYKKMLDKAVSERIVHDYKDIFKQ-----ATEDRLTSAKEL 215
Query: 940 PYFDGDYWSGAAEGVI------------------KSIEQERGD---------DFHKKLKK 972
PYF+GD+W E I +S + +GD K K
Sbjct: 216 PYFEGDFWPNVLEESIKELEQEEEERKREENTSNESTDVTKGDSKNAKKKNNKKTSKNKS 275
Query: 973 PMTKRMLKAMGHADPSSNAAKDILFMQKDDQRTQFLFFLSCCRCHDAERNLNGEDIHTLN 1032
+++ K G + S++ ++ + ++ + +FF+ I +
Sbjct: 276 SLSRGNKKKPGMPNVSNDLSQKLYATM---EKHKEVFFV----------------IRLIA 316
Query: 1033 GKEKHALNKVMVDD--VPCHTRDKDVIIDNTSFENRNAFLSFCQKNYYQFDTLRRAKYSS 1090
G ++L ++ D +PC D R+AFL+ + + +F +LRRA++S+
Sbjct: 317 GPAANSLPPIVDPDPLIPCDLMD-----------GRDAFLTLARDRHLEFSSLRRAQWST 365
Query: 1091 MMILHHLHNSS 1101
+L LH S
Sbjct: 366 GCMLVELHTQS 376
>pdb|3T92|A Chain A, Crystal Structure Of The Taz2:cEBPEPSILON-Tad Chimera
Protein
Length = 121
Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Query: 1186 LTLQKTQLMNLLQHASQCSLTKSKGCSYPKCLQMKTLFYHARSCNVRTAGGCQHCRKIWL 1245
L++Q+ + L HA+QC ++ CS P C +MK + H + C +T GGC C+++
Sbjct: 11 LSIQRA--IQSLVHAAQC---RNANCSLPSCQKMKRVVQHTKGCKRKTNGGCPICKQLIA 65
Query: 1246 LLTMHSRRCKELDCRVPRCKDLKQ 1269
L H++ C+E C VP C ++KQ
Sbjct: 66 LAAYHAKHCQENKCPVPFCLNIKQ 89
>pdb|2K8F|A Chain A, Structural Basis For The Regulation Of P53 Function By P300
Length = 90
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Query: 1186 LTLQKTQLMNLLQHASQCSLTKSKGCSYPKCLQMKTLFYHARSCNVRTAGGCQHCRKIWL 1245
L++Q+ + L HA+QC ++ CS P C +MK + H + C +T GGC C+++
Sbjct: 11 LSIQRA--IQSLVHAAQC---RNANCSLPSCQKMKRVVQHTKGCKRKTNGGCPICKQLIA 65
Query: 1246 LLTMHSRRCKELDCRVPRCKDLKQ 1269
L H++ C+E C VP C ++KQ
Sbjct: 66 LAAYHAKHCQENKCPVPFCLNIKQ 89
>pdb|3IO2|A Chain A, Crystal Structure Of The Taz2 Domain Of P300
Length = 114
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 1186 LTLQKTQLMNLLQHASQCSLTKSKGCSYPKCLQMKTLFYHARSCNVRTAGGCQHCRKIWL 1245
L++Q+ + L HA+QC ++ CS P C +MK + H + C +T GGC C+++
Sbjct: 11 LSIQRA--IQSLVHAAQC---RNANCSLPSCQKMKRVVQHTKGCKRKTNGGCPICKQLIA 65
Query: 1246 LLTMHSRRCKELDCRVPRCKDL 1267
L H++ C+E C VP C ++
Sbjct: 66 LAAYHAKHCQENKCPVPFCLNI 87
>pdb|1F81|A Chain A, Solution Structure Of The Taz2 Domain Of The Transcriptional
Adaptor Protein Cbp
Length = 88
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 1186 LTLQKTQLMNLLQHASQCSLTKSKGCSYPKCLQMKTLFYHARSCNVRTAGGCQHCRKIWL 1245
L++Q+ + L HA QC ++ CS P C +MK + H + C +T GGC C+++
Sbjct: 9 LSIQRC--IQSLVHACQC---RNANCSLPSCQKMKRVVQHTKGCKRKTNGGCPVCKQLIA 63
Query: 1246 LLTMHSRRCKELDCRVPRCKDLK 1268
L H++ C+E C VP C ++K
Sbjct: 64 LCCYHAKHCQENKCPVPFCLNIK 86
>pdb|2KA6|A Chain A, Nmr Structure Of The Cbp-Taz2STAT1-Tad Complex
pdb|2KJE|A Chain A, Nmr Structure Of Cbp Taz2 And Adenoviral E1a Complex
Length = 92
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 1186 LTLQKTQLMNLLQHASQCSLTKSKGCSYPKCLQMKTLFYHARSCNVRTAGGCQHCRKIWL 1245
L++Q+ + L HA QC ++ CS P C +MK + H + C +T GGC C+++
Sbjct: 8 LSIQRC--IQSLVHACQC---RNANCSLPSCQKMKRVVQHTKGCKRKTNGGCPVCKQLIA 62
Query: 1246 LLTMHSRRCKELDCRVPRCKDLK 1268
L H++ C+E C VP C ++K
Sbjct: 63 LCCYHAKHCQENKCPVPFCLNIK 85
>pdb|3P57|P Chain P, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2 On
Dna
Length = 112
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 1186 LTLQKTQLMNLLQHASQCSLTKSKGCSYPKCLQMKTLFYHARSCNVRTAGGCQHCRKIWL 1245
L++Q+ + L HA QC ++ CS P C +MK + H + C +T GGC C+++
Sbjct: 10 LSIQRC--IQSLVHACQC---RNANCSLPSCQKMKRVVQHTKGCKRKTNGGCPICKQLIA 64
Query: 1246 LLTMHSRRCKELDCRVPRCKDL 1267
L H++ C+E C VP C ++
Sbjct: 65 LCCYHAKHCQENKCPVPFCLNI 86
>pdb|1NSL|A Chain A, Crystal Structure Of Probable Acetyltransferase
pdb|1NSL|B Chain B, Crystal Structure Of Probable Acetyltransferase
pdb|1NSL|C Chain C, Crystal Structure Of Probable Acetyltransferase
pdb|1NSL|D Chain D, Crystal Structure Of Probable Acetyltransferase
pdb|1NSL|E Chain E, Crystal Structure Of Probable Acetyltransferase
pdb|1NSL|F Chain F, Crystal Structure Of Probable Acetyltransferase
Length = 184
Score = 34.7 bits (78), Expect = 0.38, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 33 DSYSDGLVP----PFSLLNGSTEGLTFDGYLCGAPSV--LTAVNRK-NIPSPMAKKQVGN 85
D+Y + ++P ++ LNG GL +DG LCG S+ L VNRK I +AK+ G
Sbjct: 49 DTYRETIIPDWRRQYADLNGIEAGLLYDGSLCGXISLHNLDQVNRKAEIGYWIAKEFEGK 108
Query: 86 MILSPEQDSTITSCSSE 102
I++ IT E
Sbjct: 109 GIITAACRKLITYAFEE 125
>pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e
Mutant From Human Bptf In The H3(1-9)k4me2 Bound State
Length = 174
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 633 SKAKMY---KRKNDEAIEEAWVLCDKCQGWQHQICALYNNKRDTEGKAEYICPKCRLKE 688
S K+Y K DE+ + ++ CD+CQ W H C + + E EY+CP+C+ E
Sbjct: 5 SDTKLYCICKTPEDES--KFYIGCDRCQNWYHGRCVGI-LQSEAELIDEYVCPQCQSTE 60
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
Query: 837 TAAGKT-LRTFVYHEI--LIGYLEYSKKRGFATCYIWACPPVKGEDYILYCHPEMQKTPK 893
T AGKT L + E+ G +++S + F + + W P E+ I + +
Sbjct: 73 TGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRS 132
Query: 894 SDKLRQWYRSMLRKAAEEKIVVGISNLYDQFFIPTGQHSKVTAARLPYFDGDYW 947
K Q + + A ++ IV+G + + GQ +K++ AR Y D D +
Sbjct: 133 VIKACQLEEDISKFAEKDNIVLGEGGIT----LSEGQQAKISLARAVYKDADLY 182
>pdb|3QZV|A Chain A, Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With
Histone H4k12ac Peptide
Length = 174
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 650 WVLCDKCQGWQHQICALYNNKRDTEGKAEYICPKCRLKE 688
++ CD+CQ W H C + + E EY+CP+C+ E
Sbjct: 23 YIGCDRCQNWYHGRCVGI-LQSEAELIDEYVCPQCQSTE 60
>pdb|2F6J|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6N|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2F6N|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2FSA|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
Length = 174
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 650 WVLCDKCQGWQHQICALYNNKRDTEGKAEYICPKCRLKE 688
++ CD+CQ W H C + + E EY+CP+C+ E
Sbjct: 23 YIGCDRCQNWYHGRCVGI-LQSEAELIDEYVCPQCQSTE 60
>pdb|1LLW|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Complex With
2-Oxoglutarate
pdb|1LLZ|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Reduced Enzyme
pdb|1LM1|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Native Enzyme
pdb|1OFD|A Chain A, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate At 2.0 Angstrom Resolution
pdb|1OFD|B Chain B, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate At 2.0 Angstrom Resolution
pdb|1OFE|A Chain A, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate And L-Don At 2.45 Angstrom Resolution
pdb|1OFE|B Chain B, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate And L-Don At 2.45 Angstrom Resolution
Length = 1520
Score = 31.2 bits (69), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 499 GTKNELIAQEADNGQPLKLRNPRTNGVSLTDFFTAEQLRAHISSLRQLVSQSALKEEKGN 558
G + L+ +A++ + +KLR+P N V L T + A +S+L L ++L++ N
Sbjct: 523 GKRGNLLEPKAESARTIKLRSPLVNEVELQAIKTGQLQVAEVSTLYDLDGVNSLEDALTN 582
Query: 559 KTTNTLSDNSCQLCQAEKLLLAPTP 583
++ + Q AE L+L P
Sbjct: 583 LVKTAIA--TVQ-AGAEILVLTDRP 604
>pdb|2FUI|A Chain A, Nmr Solution Structure Of Phd Finger Fragment Of Human
Bptf In Free State
pdb|2FUU|A Chain A, Nmr Solution Structure Of The Phd Domain From The Human
Bptf In Complex With H3(1-15)k4me3 Peptide
Length = 62
Score = 30.8 bits (68), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 633 SKAKMY---KRKNDEAIEEAWVLCDKCQGWQHQICALYNNKRDTEGKAEYICPKCRLKE 688
S K+Y K DE+ + ++ CD+CQ W H C + + E EY+CP+C+ E
Sbjct: 5 SDTKLYCICKTPYDES--KFYIGCDRCQNWYHGRCVGI-LQSEAELIDEYVCPQCQSTE 60
>pdb|3N9L|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide And
Nog
pdb|3N9M|A Chain A, Cekdm7a From C.Elegans, Alone
pdb|3N9M|C Chain C, Cekdm7a From C.Elegans, Alone
pdb|3N9N|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3k9me2 Peptide
And Nog
pdb|3N9O|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k9me2 Peptide And Nog
pdb|3N9P|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3k27me2 Peptide
And Nog
pdb|3N9Q|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k27me2 Peptide And Nog
pdb|3PUQ|A Chain A, Cekdm7a From C.Elegans, Complex With Alpha-Kg
pdb|3PUQ|C Chain C, Cekdm7a From C.Elegans, Complex With Alpha-Kg
pdb|3PUR|A Chain A, Cekdm7a From C.Elegans, Complex With D-2-Hg
pdb|3PUR|C Chain C, Cekdm7a From C.Elegans, Complex With D-2-Hg
Length = 528
Score = 30.4 bits (67), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 650 WVLCDKCQGWQHQICALYNNKRDTEGKAEYICPKC 684
W+ CD CQ W H +C+ + + ++ CPKC
Sbjct: 58 WIGCDSCQTWYHFLCSGL-EQFEYYLYEKFFCPKC 91
>pdb|3C5I|A Chain A, Crystal Structure Of Plasmodium Knowlesi Choline Kinase,
Pkh_134520
pdb|3C5I|B Chain B, Crystal Structure Of Plasmodium Knowlesi Choline Kinase,
Pkh_134520
pdb|3C5I|C Chain C, Crystal Structure Of Plasmodium Knowlesi Choline Kinase,
Pkh_134520
pdb|3C5I|D Chain D, Crystal Structure Of Plasmodium Knowlesi Choline Kinase,
Pkh_134520
Length = 369
Score = 30.4 bits (67), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 78/210 (37%), Gaps = 37/210 (17%)
Query: 886 PEMQKTPKSDKLRQW-YRSMLR--KAAEEKIVVGISNLYDQFFIPTGQHSKVTAARLPYF 942
P++ T ++ +W Y LR I++GI+N+ +F H+ LP
Sbjct: 101 PQLLNTFNGGRIEEWLYGDPLRIDDLKNPTILIGIANVLGKF------HTLSRKRHLP-- 152
Query: 943 DGDYWSGAAEGVIKSIEQERGD------------DFHKKLKKPMTKRMLKAMGHADPSSN 990
++W + K +E+ + D HK +K+ + + +K M S N
Sbjct: 153 --EHWDRTP-CIFKMMEKWKNQLFKYKNIEKYNCDIHKYIKE--SDKFIKFMKVYSKSDN 207
Query: 991 AAKDILFMQKDDQRTQFLFFLSCCRCHDAER---NLNGEDIHTLNGKEKHALNKVMVDDV 1047
A I+F D Q + C R D E N DI + + V
Sbjct: 208 LANTIVFCHNDLQENNIINTNKCLRLIDFEYSGFNFLATDIANFFIETSIDYS---VSSY 264
Query: 1048 PCHTRDKDVIIDNTSFENRNAFLSFCQKNY 1077
P DK I S+ENR F++ NY
Sbjct: 265 PFFEIDKKKYI---SYENRKLFITAYLSNY 291
>pdb|1WE9|A Chain A, Solution Structure Of Phd Domain In Nucleic Acid Binding
Protein-like Np_197993
Length = 64
Score = 30.0 bits (66), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 645 AIEEAWVLCDKCQGWQHQICALYNNKRDTEGKAEYICPKCRLK 687
A +E W+ CD C+ W H C R E +Y CP C K
Sbjct: 17 AADEFWICCDLCEMWFHGKCVKITPAR-AEHIKQYKCPSCSNK 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,421,006
Number of Sequences: 62578
Number of extensions: 1602386
Number of successful extensions: 3557
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 3532
Number of HSP's gapped (non-prelim): 32
length of query: 1303
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1193
effective length of database: 8,089,757
effective search space: 9651080101
effective search space used: 9651080101
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)