BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 000752
         (1303 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2WLT|A Chain A, The Crystal Structure Of Helicobacter Pylori L-Asparaginase
            At 1.4 A Resolution
 pdb|2WT4|A Chain A, Room Temperature Crystal Structure Of Helicobacter Pylori L-
            Asparaginase At 1.8 A Resolution
          Length = 332

 Score = 37.4 bits (85), Expect = 0.057,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 17/104 (16%)

Query: 1204 VGGENEPTSIGSFDRGRLIERE-----------SRVKSIDMEN-PSGRLREETLLTRAQR 1251
            + G     S+GS+  G L  +E           +R++   + N  S  + EE     AQR
Sbjct: 17   IAGSGVDASLGSYKSGELGVKELLKAIPSLNKIARIQGEQVSNIGSQDMNEEIWFKLAQR 76

Query: 1252 SSESYMKRKRSHGGIIDTNNVQMLEERRDIFYFLSFIVHNTKPV 1295
            + E  +   R  G +I T+    LEE     YFL+ ++H+TKPV
Sbjct: 77   AQE-LLDDSRIQGVVI-THGTDTLEESA---YFLNLVLHSTKPV 115


>pdb|3QO4|A Chain A, The Crystal Structure Of Death Receptor 6
          Length = 181

 Score = 30.0 bits (66), Expect = 8.6,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 818 CEECPVGTY--KNVTGSDKSLCHQCPPQEFPHRAVYISVRGGIAETPCPYRCISE 870
           C++CP GTY  ++ T +   +C  CP   F      I  +      PCP+  I +
Sbjct: 30  CDKCPAGTYVSEHCTNTSLRVCSSCPVGTFTRHENGIE-KCHDCSQPCPWPMIEK 83


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.137    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,876,623
Number of Sequences: 62578
Number of extensions: 1279755
Number of successful extensions: 2470
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2468
Number of HSP's gapped (non-prelim): 3
length of query: 1303
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1193
effective length of database: 8,089,757
effective search space: 9651080101
effective search space used: 9651080101
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)