Query 000752
Match_columns 1303
No_of_seqs 185 out of 199
Neff 4.0
Searched_HMMs 46136
Date Mon Apr 1 23:05:51 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000752.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000752hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0196 Tyrosine kinase, EPH ( 95.8 0.008 1.7E-07 75.4 4.5 55 807-874 261-319 (996)
2 PF07699 GCC2_GCC3: GCC2 and G 95.7 0.0063 1.4E-07 51.8 2.2 27 816-844 9-35 (48)
3 PF10256 Erf4: Golgin subfamil 94.5 0.1 2.2E-06 51.8 7.1 67 980-1046 21-91 (118)
4 cd00185 TNFR Tumor necrosis fa 91.0 0.34 7.4E-06 47.0 4.8 66 804-875 12-87 (98)
5 PF07562 NCD3G: Nine Cysteines 90.3 0.067 1.4E-06 47.0 -0.6 36 806-843 6-51 (54)
6 PHA02637 TNF-alpha-receptor-li 89.1 0.34 7.3E-06 49.8 3.2 57 808-869 31-92 (127)
7 PHA02637 TNF-alpha-receptor-li 83.8 0.8 1.7E-05 47.2 2.7 41 800-841 38-87 (127)
8 PF07699 GCC2_GCC3: GCC2 and G 82.8 1 2.2E-05 38.5 2.5 33 801-833 6-43 (48)
9 PF10256 Erf4: Golgin subfamil 73.6 6.4 0.00014 39.3 5.4 65 1128-1196 26-115 (118)
10 KOG0921 Dosage compensation co 69.2 13 0.00027 48.9 7.7 37 66-113 1048-1088(1282)
11 PTZ00382 Variant-specific surf 67.1 2.9 6.3E-05 41.2 1.4 25 816-843 4-28 (96)
12 KOG0921 Dosage compensation co 64.2 16 0.00035 48.0 7.2 14 6-19 523-536 (1282)
13 KOG4069 Uncharacterized conser 58.9 28 0.00061 36.5 6.7 71 979-1053 45-126 (154)
14 cd00185 TNFR Tumor necrosis fa 56.6 11 0.00025 36.6 3.4 32 815-846 11-44 (98)
15 PF12273 RCR: Chitin synthesis 53.2 12 0.00026 38.3 3.0 18 892-909 2-20 (130)
16 smart00180 EGF_Lam Laminin-typ 45.5 13 0.00027 31.9 1.5 19 809-827 22-40 (46)
17 KOG1836 Extracellular matrix g 45.1 19 0.00042 50.5 3.9 43 801-843 794-838 (1705)
18 PF14946 DUF4501: Domain of un 45.0 83 0.0018 34.3 7.7 29 887-915 83-112 (180)
19 cd00055 EGF_Lam Laminin-type e 44.1 13 0.00029 32.0 1.5 27 800-829 17-43 (50)
20 PF15496 DUF4646: Domain of un 43.9 28 0.00062 35.7 4.1 70 985-1055 43-120 (123)
21 PF07354 Sp38: Zona-pellucida- 43.3 21 0.00045 41.3 3.2 35 805-842 218-261 (271)
22 KOG4611 Uncharacterized conser 41.4 32 0.0007 41.0 4.4 64 817-884 51-125 (747)
23 PF15496 DUF4646: Domain of un 38.2 38 0.00083 34.8 4.0 50 1129-1178 44-122 (123)
24 KOG4289 Cadherin EGF LAG seven 35.0 29 0.00062 47.6 3.0 36 798-841 1734-1774(2531)
25 KOG2675 Adenylate cyclase-asso 32.9 22 0.00047 43.5 1.4 8 361-368 456-463 (480)
26 PHA02844 putative transmembran 30.1 54 0.0012 31.5 3.2 15 991-1005 17-31 (75)
27 PF00053 Laminin_EGF: Laminin 28.9 23 0.00051 30.2 0.6 21 809-829 22-42 (49)
28 PF14018 DUF4234: Domain of un 26.1 1.4E+02 0.003 27.7 5.1 47 994-1040 22-70 (75)
29 PF05268 GP38: Phage tail fibr 25.0 1.2E+02 0.0027 34.5 5.3 36 220-256 115-152 (260)
30 cd00064 FU Furin-like repeats. 24.4 46 0.00099 28.3 1.6 20 808-827 19-41 (49)
31 PF12273 RCR: Chitin synthesis 23.9 49 0.0011 33.9 2.0 40 1010-1055 2-41 (130)
32 PHA02650 hypothetical protein; 23.6 93 0.002 30.4 3.5 15 991-1005 17-31 (81)
33 PF05268 GP38: Phage tail fibr 22.7 1.5E+02 0.0032 33.9 5.3 44 249-293 106-157 (260)
34 PF04494 TFIID_90kDa: WD40 ass 22.1 1.5E+02 0.0033 30.9 5.1 57 984-1046 9-66 (142)
35 PRK01001 putative inner membra 22.0 1.3E+02 0.0029 39.6 5.5 89 960-1051 511-621 (795)
36 KOG4180 Predicted kinase [Gene 20.9 1.6E+02 0.0035 35.4 5.4 20 1098-1117 104-123 (395)
37 KOG4258 Insulin/growth factor 20.2 71 0.0015 42.2 2.7 30 1169-1198 630-666 (1025)
No 1
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=95.83 E-value=0.008 Score=75.39 Aligned_cols=55 Identities=38% Similarity=0.855 Sum_probs=41.3
Q ss_pred cCCCCCcc----CccceeCCCCcccccCCCCCCCcccCCCCCCCCcceEEeecCCccCCCCCccccCCCccC
Q 000752 807 KACPKGLY----GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGGIAETPCPYRCISERYHM 874 (1303)
Q Consensus 807 ~~CP~G~y----G~fC~eCP~GtYK~~sGs~~~lC~pCp~~~~p~ra~~iyv~~G~~~~~CpY~C~sdk~~~ 874 (1303)
=-|-+||. +.-|+.||.||||...+ ..+|.+||.+.... -...+.|. |..++|+.
T Consensus 261 C~C~aGye~~~~~~~C~aCp~G~yK~~~~--~~~C~~CP~~S~s~---------~ega~~C~--C~~gyyRA 319 (996)
T KOG0196|consen 261 CVCKAGYEEAENGKACQACPPGTYKASQG--DSLCLPCPPNSHSS---------SEGATSCT--CENGYYRA 319 (996)
T ss_pred eeecCCCCcccCCCcceeCCCCcccCCCC--CCCCCCCCCCCCCC---------CCCCCccc--ccCCcccC
Confidence 46889983 77899999999998764 47899999865321 12357786 88888864
No 2
>PF07699 GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. This entry represents various ephrin type A and B receptors, which have tyrosine kinase activity.
Probab=95.71 E-value=0.0063 Score=51.79 Aligned_cols=27 Identities=41% Similarity=1.057 Sum_probs=23.0
Q ss_pred ccceeCCCCcccccCCCCCCCcccCCCCC
Q 000752 816 IFCEECPVGTYKNVTGSDKSLCHQCPPQE 844 (1303)
Q Consensus 816 ~fC~eCP~GtYK~~sGs~~~lC~pCp~~~ 844 (1303)
.-|++||.||||+..|. ..|.+||.+.
T Consensus 9 ~~C~~Cp~GtYq~~~g~--~~C~~Cp~g~ 35 (48)
T PF07699_consen 9 NKCQPCPKGTYQDEEGQ--TSCTPCPPGS 35 (48)
T ss_pred CccCCCCCCccCCccCC--ccCccCcCCC
Confidence 45999999999999875 4799999864
No 3
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=94.54 E-value=0.1 Score=51.83 Aligned_cols=67 Identities=22% Similarity=0.386 Sum_probs=45.7
Q ss_pred CCcchhhhhhchHHHHHHHHHHHhhhh--hhh--hhhHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHH
Q 000752 980 TPPEQIKEIVYEGAFNSFVDEINAIAT--YHW--WEGAIYSILAILAYPLAWSWQQWRRRMKLQRLREYVR 1046 (1303)
Q Consensus 980 spP~~i~~ivyed~fn~Fad~iN~laa--y~~--we~~iy~iLsvl~YPlaw~~lq~rRrkk~~rL~efv~ 1046 (1303)
.-|.++..++.+++|++++++||+..+ |.. |.-++-.+|.++..=+..++.....||++++|.+||.
T Consensus 21 ~~P~~L~~~is~~ef~~iI~~IN~~l~~a~~~~~~~~~~~~~l~~lt~~l~~~~~~~~~~~~~~~le~~l~ 91 (118)
T PF10256_consen 21 EYPGELSGYISPEEFEEIINTINQILKEAFEPISWRNIIENILGCLTLGLSSLCFKTHYKRKLRELEKYLE 91 (118)
T ss_pred cCCHhhcCCCCHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467779999999999999999999873 222 4444555555554222222234456677888999997
No 4
>cd00185 TNFR Tumor necrosis factor receptor (TNFR) domain; superfamily of TNF-like receptor domains. When bound to TNF-like cytokines, TNFRs trigger multiple signal transduction pathways, they are involved in inflammation response, apoptosis, autoimmunity and organogenesis. TNFRs domains are elongated with generally three tandem repeats of cysteine-rich domains (CRDs). They fit in the grooves between protomers within the ligand trimer. Some TNFRs, such as NGFR and HveA, bind ligands with no structural similarity to TNF and do not bind ligand trimers.
Probab=90.95 E-value=0.34 Score=46.99 Aligned_cols=66 Identities=26% Similarity=0.555 Sum_probs=41.6
Q ss_pred EEccCCCCCcc---------CccceeCCCCcccccCCCCCCCcccCCCCCCCCcceEEeecCC-ccCCCCCccccCCCcc
Q 000752 804 TTGKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGG-IAETPCPYRCISERYH 873 (1303)
Q Consensus 804 i~g~~CP~G~y---------G~fC~eCP~GtYK~~sGs~~~lC~pCp~~~~p~ra~~iyv~~G-~~~~~CpY~C~sdk~~ 873 (1303)
.-=+.||+|++ ...|++||.|+|...... ...|++|+. .+ ...++..... .+.+.|- |.+++|-
T Consensus 12 ~cC~~C~pG~~~~~~C~~~~~t~C~~C~~g~ys~~~~~-~~~C~~c~~--C~-~g~~~~~~ct~t~dt~C~--C~~G~y~ 85 (98)
T cd00185 12 LCCDQCPPGTYLSKDCTPGSDTVCEPCPPGTYTDSWNH-LPKCLSCRT--CD-SGLVEKAPCTATRNTVCG--CKPGFYC 85 (98)
T ss_pred CCCCCCCCCccCCCcCCCCCCCeecCCCCCCcccCCCC-CCcCCcCcc--CC-CCCEEEccCCCCCCCeEe--CCCCCEe
Confidence 44578999986 356999999999886532 246777764 33 2233332222 2245685 8888885
Q ss_pred CC
Q 000752 874 MP 875 (1303)
Q Consensus 874 ~~ 875 (1303)
..
T Consensus 86 ~~ 87 (98)
T cd00185 86 LT 87 (98)
T ss_pred cC
Confidence 43
No 5
>PF07562 NCD3G: Nine Cysteines Domain of family 3 GPCR; InterPro: IPR011500 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). GPCR family 3 receptors (also known as family C) are structurally similar to other GPCRs, but do not show any significant sequence similarity and thus represent a distinct group. Structurally they are composed of four elements; an N-terminal signal sequence; a large hydrophilic extracellular agonist-binding region containing several conserved cysteine residues which could be involved in disulphide bonds; a shorter region containing seven transmembrane domains; and a C-terminal cytoplasmic domain of variable length []. Family 3 members include the metabotropic glutamate receptors, the extracellular calcium-sensing receptors, the gamma-amino-butyric acid (GABA) type B receptors, and the vomeronasal type-2 receptors [, , , ]. As these receptors regulate many important physiological processes they are potentially promising targets for drug development. This entry represents a conserved sequence, found in the extracellular region, that contains several highly-conserved Cys residues that are predicted to form disulphide bridges.; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 2E4X_B 2E4Y_A 2E4U_B 2E4V_B 2E4W_A.
Probab=90.30 E-value=0.067 Score=47.03 Aligned_cols=36 Identities=36% Similarity=0.812 Sum_probs=19.8
Q ss_pred ccCCCCCccC----------ccceeCCCCcccccCCCCCCCcccCCCC
Q 000752 806 GKACPKGLYG----------IFCEECPVGTYKNVTGSDKSLCHQCPPQ 843 (1303)
Q Consensus 806 g~~CP~G~yG----------~fC~eCP~GtYK~~sGs~~~lC~pCp~~ 843 (1303)
..+|++|++. +-|++||.|+|.+.+ +...|.+||.+
T Consensus 6 S~~C~pG~~k~~~~~~~~CCw~C~~C~~~~is~~~--~~~~C~~C~~~ 51 (54)
T PF07562_consen 6 SEPCPPGQRKKIQKGQPSCCWDCVPCPEGEISNQT--DSTSCTKCPEG 51 (54)
T ss_dssp S----TTTEEEE--SSS-S--EEEE--TTEEEE----ETTEEEE--TT
T ss_pred CCCCCCCCEECccCCCcceEEEeecCCCCcEECCC--CccccccCCCc
Confidence 4689999852 349999999999976 44689999974
No 6
>PHA02637 TNF-alpha-receptor-like protein; Provisional
Probab=89.12 E-value=0.34 Score=49.85 Aligned_cols=57 Identities=26% Similarity=0.596 Sum_probs=37.4
Q ss_pred CCCCCcc---CccceeCCCCcccccCCC--CCCCcccCCCCCCCCcceEEeecCCccCCCCCccccC
Q 000752 808 ACPKGLY---GIFCEECPVGTYKNVTGS--DKSLCHQCPPQEFPHRAVYISVRGGIAETPCPYRCIS 869 (1303)
Q Consensus 808 ~CP~G~y---G~fC~eCP~GtYK~~sGs--~~~lC~pCp~~~~p~ra~~iyv~~G~~~~~CpY~C~s 869 (1303)
.|..+-| +.-|.+||.|+|...-.+ ....|.|||.+++....++.. ....|.-.|++
T Consensus 31 ~C~e~EY~~~~~CC~kCPPGt~v~~~Ct~~t~T~C~PCp~GTYTe~~N~~~-----~C~~C~~~Cd~ 92 (127)
T PHA02637 31 KCKDNEYKRHNLCCLSCPPGTYASRLCDIKTNTQCTPCGSGTFTSHNNHLP-----ACLSCNGRCDR 92 (127)
T ss_pred CCCCCcCcCCCeEcCCCCCCCEEeCcCCCCCCcccccCCCCCeeccCCCCC-----cccccCCccCc
Confidence 6887765 344999999998874332 135799999876554444332 25677777876
No 7
>PHA02637 TNF-alpha-receptor-like protein; Provisional
Probab=83.83 E-value=0.8 Score=47.20 Aligned_cols=41 Identities=24% Similarity=0.617 Sum_probs=30.3
Q ss_pred CCceEEccCCCCCcc---------CccceeCCCCcccccCCCCCCCcccCC
Q 000752 800 ENGTTTGKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCP 841 (1303)
Q Consensus 800 ~nGTi~g~~CP~G~y---------G~fC~eCP~GtYK~~sGs~~~lC~pCp 841 (1303)
..+..-=+.||+|+| ..-|.+||.|||....-. ...|.+|.
T Consensus 38 ~~~~~CC~kCPPGt~v~~~Ct~~t~T~C~PCp~GTYTe~~N~-~~~C~~C~ 87 (127)
T PHA02637 38 KRHNLCCLSCPPGTYASRLCDIKTNTQCTPCGSGTFTSHNNH-LPACLSCN 87 (127)
T ss_pred cCCCeEcCCCCCCCEEeCcCCCCCCcccccCCCCCeeccCCC-CCcccccC
Confidence 456667789999985 567999999999875332 24577776
No 8
>PF07699 GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. This entry represents various ephrin type A and B receptors, which have tyrosine kinase activity.
Probab=82.76 E-value=1 Score=38.55 Aligned_cols=33 Identities=39% Similarity=0.910 Sum_probs=25.4
Q ss_pred CceEEccCCCCCcc----C-ccceeCCCCcccccCCCC
Q 000752 801 NGTTTGKACPKGLY----G-IFCEECPVGTYKNVTGSD 833 (1303)
Q Consensus 801 nGTi~g~~CP~G~y----G-~fC~eCP~GtYK~~sGs~ 833 (1303)
.+...=.+||.|+| | ..|++||.|+|....|+.
T Consensus 6 ~~~~~C~~Cp~GtYq~~~g~~~C~~Cp~g~~T~~~Gs~ 43 (48)
T PF07699_consen 6 SGNNKCQPCPKGTYQDEEGQTSCTPCPPGSTTSSEGST 43 (48)
T ss_pred CCCCccCCCCCCccCCccCCccCccCcCCCccCCcCCc
Confidence 34445589999987 3 449999999998877764
No 9
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=73.60 E-value=6.4 Score=39.31 Aligned_cols=65 Identities=15% Similarity=0.322 Sum_probs=47.2
Q ss_pred hccccChhHHHHHHHHHHHHHhhh-ccc------------------------cchhhHHHHHHHHHhhcccccccCCeEE
Q 000752 1128 MSQLVPPTICYRLVAGLNAQLRLV-RRG------------------------RLRATFRPVLRWLETHANPTLQLHGLRV 1182 (1303)
Q Consensus 1128 ~~q~v~~~~w~rfVa~lN~qlr~v-~~~------------------------slr~~l~~vi~~l~~h~n~~l~~~gvrv 1182 (1303)
++..++++.|.++|..+|..|+.- ..- .-+..+..+=+||++.|++.+..+|+++
T Consensus 26 L~~~is~~ef~~iI~~IN~~l~~a~~~~~~~~~~~~~l~~lt~~l~~~~~~~~~~~~~~~le~~l~~~N~~~~~~~gi~i 105 (118)
T PF10256_consen 26 LSGYISPEEFEEIINTINQILKEAFEPISWRNIIENILGCLTLGLSSLCFKTHYKRKLRELEKYLEQLNEELFKPRGIKI 105 (118)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcEE
Confidence 566789999999999999999887 321 2233555677899999888999999854
Q ss_pred EEEEEEeeceeeEE
Q 000752 1183 DLAWFQATACGYCQ 1196 (1303)
Q Consensus 1183 ~l~~fq~~~~g~~q 1196 (1303)
- -.-.+||-.
T Consensus 106 i----~pr~~g~ls 115 (118)
T PF10256_consen 106 I----SPRRSGYLS 115 (118)
T ss_pred E----chhHceEEE
Confidence 3 233555543
No 10
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=69.23 E-value=13 Score=48.91 Aligned_cols=37 Identities=27% Similarity=0.467 Sum_probs=19.2
Q ss_pred CCcccccccCCCccCCCCeEEEeeeeec----CCCeEEEeeeEEEEecCCeE
Q 000752 66 PPSVSCTDDLDGIGTLDSTCQIVNDLNL----TRDVYICGKGNFEILTGVKF 113 (1303)
Q Consensus 66 ~~s~~C~~dl~g~gs~~t~c~l~~~~~~----~~~~~i~g~G~l~i~~~v~l 113 (1303)
-.++||.. =.|.+++.| .+-|-..|.|-+.+++=.+|
T Consensus 1048 TRAIS~K~-----------MslVsPLQLLLF~SrKVqsdgq~IV~VDdWIkl 1088 (1282)
T KOG0921|consen 1048 TRAISCKQ-----------MSLVSPLQLLLFGSRKVQSDGQGIVRVDDWIKL 1088 (1282)
T ss_pred hheecccC-----------ccccChHHHhhhhhhhccccCcceEEeeceeeE
Confidence 34777871 234555444 33455555555555554444
No 11
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=67.10 E-value=2.9 Score=41.16 Aligned_cols=25 Identities=28% Similarity=0.557 Sum_probs=17.9
Q ss_pred ccceeCCCCcccccCCCCCCCcccCCCC
Q 000752 816 IFCEECPVGTYKNVTGSDKSLCHQCPPQ 843 (1303)
Q Consensus 816 ~fC~eCP~GtYK~~sGs~~~lC~pCp~~ 843 (1303)
..|++|..|+|++..+ ..|.+|+.+
T Consensus 4 ~~Ct~C~~g~~~~~~~---~~C~~C~~~ 28 (96)
T PTZ00382 4 AVCTSCDSDKKPNKDG---SGCVLCSVG 28 (96)
T ss_pred cccCcCCCCCccCCCC---CcCCcCCCC
Confidence 3688898888887533 458888853
No 12
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=64.16 E-value=16 Score=48.03 Aligned_cols=14 Identities=14% Similarity=-0.164 Sum_probs=10.0
Q ss_pred cccchhhhhhhhee
Q 000752 6 SHPHHYSLHFAFLF 19 (1303)
Q Consensus 6 ~~~~~~~~~~~~~~ 19 (1303)
+|++|.+||-|-+=
T Consensus 523 y~dl~v~lmsatId 536 (1282)
T KOG0921|consen 523 YRDLRVVLMSATID 536 (1282)
T ss_pred chhhhhhhhhcccc
Confidence 57788888877543
No 13
>KOG4069 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.95 E-value=28 Score=36.47 Aligned_cols=71 Identities=20% Similarity=0.382 Sum_probs=49.8
Q ss_pred CCCcchhhhhhchHHHHHHHHHHHhhhhh-------hhhhhHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHHhh---
Q 000752 979 HTPPEQIKEIVYEGAFNSFVDEINAIATY-------HWWEGAIYSILAILAYPLAWSWQQWRRRMKLQRLREYVRSE--- 1048 (1303)
Q Consensus 979 ~spP~~i~~ivyed~fn~Fad~iN~laay-------~~we~~iy~iLsvl~YPlaw~~lq~rRrkk~~rL~efv~se--- 1048 (1303)
...|..+++.|..+.|+.=+..+|++-|= +.+|+.+ =++.+|-.|.--.. --+||+++|++|++++
T Consensus 45 ~~~pa~le~~i~R~vfE~Ti~rlN~~yAeAE~~~~qty~Egcl---gC~TaY~iy~ctet-hYek~L~klskfl~~qNe~ 120 (154)
T KOG4069|consen 45 AEYPARLEEKIPRDVFENTIVRLNRIYAEAEAITPQTYFEGCL---GCFTAYAIYACTET-HYEKKLDKLSKFLNRQNEE 120 (154)
T ss_pred ecCcHHHhccCcHHHHHHHHHHHHHHHHHHHhcCCcchHHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhh
Confidence 45789999999999999999999998432 1355544 45666655544333 3357899999999843
Q ss_pred -cCchh
Q 000752 1049 -YDHAC 1053 (1303)
Q Consensus 1049 -ydh~c 1053 (1303)
|.|.=
T Consensus 121 IY~~~G 126 (154)
T KOG4069|consen 121 IYHHVG 126 (154)
T ss_pred hccccc
Confidence 66643
No 14
>cd00185 TNFR Tumor necrosis factor receptor (TNFR) domain; superfamily of TNF-like receptor domains. When bound to TNF-like cytokines, TNFRs trigger multiple signal transduction pathways, they are involved in inflammation response, apoptosis, autoimmunity and organogenesis. TNFRs domains are elongated with generally three tandem repeats of cysteine-rich domains (CRDs). They fit in the grooves between protomers within the ligand trimer. Some TNFRs, such as NGFR and HveA, bind ligands with no structural similarity to TNF and do not bind ligand trimers.
Probab=56.60 E-value=11 Score=36.61 Aligned_cols=32 Identities=34% Similarity=1.062 Sum_probs=23.2
Q ss_pred CccceeCCCCcccccCCC--CCCCcccCCCCCCC
Q 000752 815 GIFCEECPVGTYKNVTGS--DKSLCHQCPPQEFP 846 (1303)
Q Consensus 815 G~fC~eCP~GtYK~~sGs--~~~lC~pCp~~~~p 846 (1303)
+.-|..||+|+|-..... ....|.+|+.+.+.
T Consensus 11 ~~cC~~C~pG~~~~~~C~~~~~t~C~~C~~g~ys 44 (98)
T cd00185 11 GLCCDQCPPGTYLSKDCTPGSDTVCEPCPPGTYT 44 (98)
T ss_pred CCCCCCCCCCccCCCcCCCCCCCeecCCCCCCcc
Confidence 455999999999775432 23579999986643
No 15
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=53.17 E-value=12 Score=38.25 Aligned_cols=18 Identities=33% Similarity=0.984 Sum_probs=7.7
Q ss_pred hh-hHHHHHHHHHHHHHHH
Q 000752 892 WL-FCLLLVGLLILLALVL 909 (1303)
Q Consensus 892 ~~-F~lll~~lliLlalvl 909 (1303)
|. |+||+++++|+|++++
T Consensus 2 W~l~~iii~~i~l~~~~~~ 20 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFY 20 (130)
T ss_pred eeeHHHHHHHHHHHHHHHH
Confidence 53 4444444444444443
No 16
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai.
Probab=45.49 E-value=13 Score=31.87 Aligned_cols=19 Identities=32% Similarity=0.835 Sum_probs=17.7
Q ss_pred CCCCccCccceeCCCCccc
Q 000752 809 CPKGLYGIFCEECPVGTYK 827 (1303)
Q Consensus 809 CP~G~yG~fC~eCP~GtYK 827 (1303)
|++++.|..|.+|+.|+|-
T Consensus 22 C~~~~~G~~C~~C~~g~~g 40 (46)
T smart00180 22 CKPNVTGRRCDRCAPGYYG 40 (46)
T ss_pred CCCCCCCCCCCcCCCCcCC
Confidence 9999999999999999996
No 17
>KOG1836 consensus Extracellular matrix glycoprotein Laminin subunits alpha and gamma [Extracellular structures]
Probab=45.07 E-value=19 Score=50.49 Aligned_cols=43 Identities=35% Similarity=0.688 Sum_probs=35.9
Q ss_pred CceEEccCCCCCccCccceeCCCCcccccCCCC--CCCcccCCCC
Q 000752 801 NGTTTGKACPKGLYGIFCEECPVGTYKNVTGSD--KSLCHQCPPQ 843 (1303)
Q Consensus 801 nGTi~g~~CP~G~yG~fC~eCP~GtYK~~sGs~--~~lC~pCp~~ 843 (1303)
.-++.-|.||+||.|..|++|.-|+|=+..+-+ ...|++|+-+
T Consensus 794 ~~~~iCk~Cp~gytG~rCe~c~dgyfg~p~~~~~~~~~c~~c~c~ 838 (1705)
T KOG1836|consen 794 ILEVVCKNCPPGYTGLRCEECADGYFGNPLGHDGDVRPCQSCQCN 838 (1705)
T ss_pred ccceecCCCCCCCcccccccCCCccccCCCCCCCCcccCccceec
Confidence 667778999999999999999999998865433 3589999964
No 18
>PF14946 DUF4501: Domain of unknown function (DUF4501)
Probab=44.97 E-value=83 Score=34.34 Aligned_cols=29 Identities=41% Similarity=0.557 Sum_probs=19.6
Q ss_pred HhCCchhh-HHHHHHHHHHHHHHHHHhhhh
Q 000752 887 TFGGPWLF-CLLLVGLLILLALVLSVARMK 915 (1303)
Q Consensus 887 tfGGp~~F-~lll~~lliLlalvls~~R~k 915 (1303)
.+|||+.. .|||=.|+|-++++++++-.-
T Consensus 83 ~~g~P~vAASL~LgTffIS~~LilSvA~FF 112 (180)
T PF14946_consen 83 HTGGPQVAASLFLGTFFISLGLILSVASFF 112 (180)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 36999954 444446777788888876543
No 19
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Probab=44.13 E-value=13 Score=32.05 Aligned_cols=27 Identities=26% Similarity=0.562 Sum_probs=22.0
Q ss_pred CCceEEccCCCCCccCccceeCCCCccccc
Q 000752 800 ENGTTTGKACPKGLYGIFCEECPVGTYKNV 829 (1303)
Q Consensus 800 ~nGTi~g~~CP~G~yG~fC~eCP~GtYK~~ 829 (1303)
.+|.- .|++++.|..|.+|+.|+|...
T Consensus 17 ~~G~C---~C~~~~~G~~C~~C~~g~~~~~ 43 (50)
T cd00055 17 GTGQC---ECKPNTTGRRCDRCAPGYYGLP 43 (50)
T ss_pred CCCEE---eCCCcCCCCCCCCCCCCCccCC
Confidence 35554 3999999999999999999653
No 20
>PF15496 DUF4646: Domain of unknown function (DUF4646)
Probab=43.95 E-value=28 Score=35.74 Aligned_cols=70 Identities=14% Similarity=0.216 Sum_probs=47.9
Q ss_pred hhhhhchHHHHHHHHHHHhhhhhhhhhhHHHHhhh--------hhhcchhHHHHHHHHHHHHHHHHHHHHhhcCchhhc
Q 000752 985 IKEIVYEGAFNSFVDEINAIATYHWWEGAIYSILA--------ILAYPLAWSWQQWRRRMKLQRLREYVRSEYDHACLR 1055 (1303)
Q Consensus 985 i~~ivyed~fn~Fad~iN~laay~~we~~iy~iLs--------vl~YPlaw~~lq~rRrkk~~rL~efv~seydh~clr 1055 (1303)
...=|.++++.+|.++++.-++.+-+|.++-...- +..|=.++...+.+.+||-..+.++|. ..++.+|+
T Consensus 43 ~~~DVs~eDW~~F~~dl~~aa~ls~~~~~~~~~~~~~~~v~~Gi~~~~v~~~~~~~~~~~k~~~v~~~i~-~WN~~FF~ 120 (123)
T PF15496_consen 43 ASHDVSEEDWTRFLNDLSEAASLSPSQSIVAGVGPIVMGVGFGIPAYLVAKAIRKAMKEKKRGEVESTID-QWNEGFFR 120 (123)
T ss_pred hhcCCCHHHHHHHHHHHHHHHhcCcccceeeeeccccccccccchhhhhhHhhhhcccccchHHHHHHHH-HHHHHhcc
Confidence 44457899999999999999888877754332111 233444555666677777788888887 46666654
No 21
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=43.33 E-value=21 Score=41.28 Aligned_cols=35 Identities=29% Similarity=0.590 Sum_probs=26.4
Q ss_pred EccCCCCCcc---------CccceeCCCCcccccCCCCCCCcccCCC
Q 000752 805 TGKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPP 842 (1303)
Q Consensus 805 ~g~~CP~G~y---------G~fC~eCP~GtYK~~sGs~~~lC~pCp~ 842 (1303)
+=..|+|||+ -.=|+-|++|||....+ ..|+.|..
T Consensus 218 ~idsC~PGfG~N~~~h~~C~~CCVvCsPgTysp~~~---~~C~~C~~ 261 (271)
T PF07354_consen 218 RIDSCRPGFGKNDILHSDCPSCCVVCSPGTYSPDDD---VHCQQCNS 261 (271)
T ss_pred EeeccCCCCCcCcccCCCCCCeeEECCCcccCCCCC---ceEEecCc
Confidence 3356777775 12499999999998654 58999995
No 22
>KOG4611 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.43 E-value=32 Score=41.02 Aligned_cols=64 Identities=31% Similarity=0.655 Sum_probs=38.3
Q ss_pred cceeCCCCcccccCCCCCCCcccCCCCCC--CCcceEEeecC-C--cc-CCCCCccccCCCccC-----CcccchHHHH
Q 000752 817 FCEECPVGTYKNVTGSDKSLCHQCPPQEF--PHRAVYISVRG-G--IA-ETPCPYRCISERYHM-----PHCYTALEEL 884 (1303)
Q Consensus 817 fC~eCP~GtYK~~sGs~~~lC~pCp~~~~--p~ra~~iyv~~-G--~~-~~~CpY~C~sdk~~~-----~~C~tple~l 884 (1303)
-|++||.||.... +..-|..|-++++ |.+..-+.-.. | .+ ...|- .|-+++|+. ..|-|+..|.
T Consensus 51 tceecpegtlssp---dqtgclncnngtchcpsqstlifrdasgnlltndafcg-ncasgfyrndngyctkcetscsem 125 (747)
T KOG4611|consen 51 TCEECPEGTLSSP---DQTGCLNCNNGTCHCPSQSTLIFRDASGNLLTNDAFCG-NCASGFYRNDNGYCTKCETSCSEM 125 (747)
T ss_pred ccccCCCcccCCC---ccCCceecCCCccCCCCcceEEEEcCCCCeeccccccc-cccccceECCCcccccccccHhhh
Confidence 3999999997543 4456999888764 44443333211 1 11 24564 677888754 5666665543
No 23
>PF15496 DUF4646: Domain of unknown function (DUF4646)
Probab=38.22 E-value=38 Score=34.81 Aligned_cols=50 Identities=12% Similarity=0.014 Sum_probs=33.8
Q ss_pred ccccChhHHHHHHHHHHHHHhhhcccc-----------------------------chhhHHHHHHHHHhhcccccccC
Q 000752 1129 SQLVPPTICYRLVAGLNAQLRLVRRGR-----------------------------LRATFRPVLRWLETHANPTLQLH 1178 (1303)
Q Consensus 1129 ~q~v~~~~w~rfVa~lN~qlr~v~~~s-----------------------------lr~~l~~vi~~l~~h~n~~l~~~ 1178 (1303)
.-.|..+.|.||+.+|+.-.++-...+ ..+.-.+|-..|++||+.+|+.-
T Consensus 44 ~~DVs~eDW~~F~~dl~~aa~ls~~~~~~~~~~~~~~~v~~Gi~~~~v~~~~~~~~~~~k~~~v~~~i~~WN~~FF~PR 122 (123)
T PF15496_consen 44 SHDVSEEDWTRFLNDLSEAASLSPSQSIVAGVGPIVMGVGFGIPAYLVAKAIRKAMKEKKRGEVESTIDQWNEGFFRPR 122 (123)
T ss_pred hcCCCHHHHHHHHHHHHHHHhcCcccceeeeeccccccccccchhhhhhHhhhhcccccchHHHHHHHHHHHHHhccCC
Confidence 346999999999999999855443222 22223356677888888777653
No 24
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=35.03 E-value=29 Score=47.61 Aligned_cols=36 Identities=39% Similarity=0.900 Sum_probs=26.9
Q ss_pred cCCCceEEccCCCCCccCccce-----eCCCCcccccCCCCCCCcccCC
Q 000752 798 GGENGTTTGKACPKGLYGIFCE-----ECPVGTYKNVTGSDKSLCHQCP 841 (1303)
Q Consensus 798 ~g~nGTi~g~~CP~G~yG~fC~-----eCP~GtYK~~sGs~~~lC~pCp 841 (1303)
++.+|-. -.||+||+|..|+ +||.|||-. ..|.||.
T Consensus 1734 p~a~GY~--C~C~~g~~G~~Ce~~~dq~CPrGWWG~------P~CgpC~ 1774 (2531)
T KOG4289|consen 1734 PGAHGYT--CECPPGYTGPYCELRADQPCPRGWWGF------PTCGPCN 1774 (2531)
T ss_pred CCCCcee--EECCCcccCcchhhhccCCCCCcccCC------CCccCcc
Confidence 3445533 7899999999995 899999853 3477775
No 25
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=32.89 E-value=22 Score=43.52 Aligned_cols=8 Identities=38% Similarity=0.721 Sum_probs=3.3
Q ss_pred cCCCCcce
Q 000752 361 EFPNQPLW 368 (1303)
Q Consensus 361 ~fP~~~l~ 368 (1303)
|||..-.|
T Consensus 456 EfpvPEQf 463 (480)
T KOG2675|consen 456 EFPVPEQF 463 (480)
T ss_pred cccChHHH
Confidence 44444333
No 26
>PHA02844 putative transmembrane protein; Provisional
Probab=30.14 E-value=54 Score=31.54 Aligned_cols=15 Identities=27% Similarity=0.696 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHhhh
Q 000752 991 EGAFNSFVDEINAIA 1005 (1303)
Q Consensus 991 ed~fn~Fad~iN~la 1005 (1303)
+|.||+|+|-+-.++
T Consensus 17 DdDFnnFI~vVksVL 31 (75)
T PHA02844 17 NEDFNNFIDVVKSVL 31 (75)
T ss_pred hHHHHHHHHHHHHHH
Confidence 678999999987766
No 27
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation. They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.
Probab=28.88 E-value=23 Score=30.17 Aligned_cols=21 Identities=29% Similarity=0.689 Sum_probs=17.4
Q ss_pred CCCCccCccceeCCCCccccc
Q 000752 809 CPKGLYGIFCEECPVGTYKNV 829 (1303)
Q Consensus 809 CP~G~yG~fC~eCP~GtYK~~ 829 (1303)
|++++.|..|.+|..|+|...
T Consensus 22 C~~~~~G~~C~~C~~g~~~~~ 42 (49)
T PF00053_consen 22 CKPGTTGPRCDQCKPGYFGLP 42 (49)
T ss_dssp BSTTEESTTS-EE-TTEECST
T ss_pred ccccccCCcCcCCCCcccccc
Confidence 999999999999999999764
No 28
>PF14018 DUF4234: Domain of unknown function (DUF4234)
Probab=26.11 E-value=1.4e+02 Score=27.74 Aligned_cols=47 Identities=11% Similarity=0.162 Sum_probs=28.4
Q ss_pred HHHHHHHHHhhhhhh--hhhhHHHHhhhhhhcchhHHHHHHHHHHHHHH
Q 000752 994 FNSFVDEINAIATYH--WWEGAIYSILAILAYPLAWSWQQWRRRMKLQR 1040 (1303)
Q Consensus 994 fn~Fad~iN~laay~--~we~~iy~iLsvl~YPlaw~~lq~rRrkk~~r 1040 (1303)
+.+..+++|++..-. .+...++.++.++..++++.+.-++-++++++
T Consensus 22 ~y~~~~~~~~~~~~~~~~~~~~~~lll~ilt~gi~~i~w~~k~~~~i~~ 70 (75)
T PF14018_consen 22 LYKIWKELNQLTGRIISPRSMTLWLLLSILTCGIYSIYWAYKLGNRINE 70 (75)
T ss_pred HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667788875433 34555666677776666666555666666643
No 29
>PF05268 GP38: Phage tail fibre adhesin Gp38; InterPro: IPR007932 This entry is represented by Bacteriophage T2, Gp38. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains several Gp38 proteins from T-even-like phages. Gp38, together with a second phage protein, Gp57, catalyses the organisation of Gp37 but is absent from the phage particle. Gp37 is responsible for receptor recognition [].
Probab=24.98 E-value=1.2e+02 Score=34.48 Aligned_cols=36 Identities=31% Similarity=0.501 Sum_probs=20.2
Q ss_pred cCCCCCCCCCCCCCCcCCccEEEEEEeeeEEe--ccEEE
Q 000752 220 YGSRGGTTSQEFDYGGGGGGRIKMVIDEYVVL--DGSIS 256 (1303)
Q Consensus 220 ~GSGGG~g~~~~~~GGaGGG~I~i~a~~~l~l--~G~i~ 256 (1303)
+|.||- +..+...+.+||=+|+=.....|.+ +|.|.
T Consensus 115 yGRGGn-Gs~~~~~g~~GG~~I~N~iG~rLRI~N~GaIA 152 (260)
T PF05268_consen 115 YGRGGN-GSGSNSAGAAGGHAIQNDIGGRLRINNNGAIA 152 (260)
T ss_pred EecCCC-CCCCCCCccccceeeecCCcceEEEecCCEEe
Confidence 444443 3344566788888887544444444 55554
No 30
>cd00064 FU Furin-like repeats. Cysteine rich region. Exact function of the domain is not known. Furin is a serine-kinase dependent proprotein processor. Other members of this family include endoproteases and cell surface receptors.
Probab=24.43 E-value=46 Score=28.29 Aligned_cols=20 Identities=50% Similarity=1.080 Sum_probs=9.2
Q ss_pred CCCCCc--cCccce-eCCCCccc
Q 000752 808 ACPKGL--YGIFCE-ECPVGTYK 827 (1303)
Q Consensus 808 ~CP~G~--yG~fC~-eCP~GtYK 827 (1303)
.|++++ .+..|+ .||.++|.
T Consensus 19 ~C~~~~~~~~~~Cv~~C~~~~~~ 41 (49)
T cd00064 19 SCRHGFYLDGGTCVSECPEGTYA 41 (49)
T ss_pred cCcCccCCCCCcccccCCCCcee
Confidence 444444 233444 45555544
No 31
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=23.89 E-value=49 Score=33.85 Aligned_cols=40 Identities=25% Similarity=0.396 Sum_probs=21.3
Q ss_pred hhhHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHHhhcCchhhc
Q 000752 1010 WEGAIYSILAILAYPLAWSWQQWRRRMKLQRLREYVRSEYDHACLR 1055 (1303)
Q Consensus 1010 we~~iy~iLsvl~YPlaw~~lq~rRrkk~~rL~efv~seydh~clr 1055 (1303)
|-.++.+|+.|+.+=+...+..+||||| -++ --+.+.||-
T Consensus 2 W~l~~iii~~i~l~~~~~~~~~rRR~r~--G~~----P~~gt~w~~ 41 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYCHNRRRRRR--GLQ----PIYGTRWMA 41 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhhc--CCC----CcCCceecC
Confidence 5445555555555555555555555554 222 235677775
No 32
>PHA02650 hypothetical protein; Provisional
Probab=23.61 E-value=93 Score=30.36 Aligned_cols=15 Identities=27% Similarity=0.756 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHhhh
Q 000752 991 EGAFNSFVDEINAIA 1005 (1303)
Q Consensus 991 ed~fn~Fad~iN~la 1005 (1303)
+|.||+|+|-+-.++
T Consensus 17 DdDFnnFI~VVkSVL 31 (81)
T PHA02650 17 DDDFNNFIDVVKSVL 31 (81)
T ss_pred HHHHHHHHHHHHHHH
Confidence 678999999887665
No 33
>PF05268 GP38: Phage tail fibre adhesin Gp38; InterPro: IPR007932 This entry is represented by Bacteriophage T2, Gp38. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains several Gp38 proteins from T-even-like phages. Gp38, together with a second phage protein, Gp57, catalyses the organisation of Gp37 but is absent from the phage particle. Gp37 is responsible for receptor recognition [].
Probab=22.67 E-value=1.5e+02 Score=33.95 Aligned_cols=44 Identities=27% Similarity=0.714 Sum_probs=24.4
Q ss_pred EEecc--EEEecCCCC-CCCCcccCCccEEEEE-----eeecCceEEEEecCC
Q 000752 249 VVLDG--SISADGGDG-GHKGGGGSGGSIYLIA-----YKMTGSGLISACGGN 293 (1303)
Q Consensus 249 l~l~G--~i~AnGg~g-~~~gGGGSGGSI~L~a-----~~l~g~G~lsA~GG~ 293 (1303)
|.+++ .+.-.|+++ ....-|..||.. |+- .++.++|.|..-||.
T Consensus 106 L~In~GVt~yGRGGnGs~~~~~g~~GG~~-I~N~iG~rLRI~N~GaIAgGGGG 157 (260)
T PF05268_consen 106 LNINGGVTMYGRGGNGSGSNSAGAAGGHA-IQNDIGGRLRINNNGAIAGGGGG 157 (260)
T ss_pred EEeCCCEEEEecCCCCCCCCCCcccccee-eecCCcceEEEecCCEEecCCCC
Confidence 44544 444456665 445566677764 332 266677777654443
No 34
>PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID. The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F.
Probab=22.12 E-value=1.5e+02 Score=30.85 Aligned_cols=57 Identities=16% Similarity=0.222 Sum_probs=37.1
Q ss_pred hhhhhhchHHHHHHHHHHHhhhhhhhhhhHHHHhhhhhhcc-hhHHHHHHHHHHHHHHHHHHHH
Q 000752 984 QIKEIVYEGAFNSFVDEINAIATYHWWEGAIYSILAILAYP-LAWSWQQWRRRMKLQRLREYVR 1046 (1303)
Q Consensus 984 ~i~~ivyed~fn~Fad~iN~laay~~we~~iy~iLsvl~YP-law~~lq~rRrkk~~rL~efv~ 1046 (1303)
+..+-.|+++|.+|.+=|+.....-+-| |+-+.|| |...+++..++.+..+.++|+.
T Consensus 9 ~~~p~~y~~~y~~l~~wv~~sld~yK~E------L~~lLyPvFvh~YL~Lv~~~~~~~A~~F~~ 66 (142)
T PF04494_consen 9 ENDPDKYEQAYSRLRNWVDNSLDIYKPE------LSRLLYPVFVHSYLDLVSKGHPEEAKSFLE 66 (142)
T ss_dssp ---GCCHHHHHHHHHHHHHTS-HHHHHH------HGGGHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhCcHhhHHH------HHHHHHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 3444457778888888776644333334 4445555 5667889999999999999998
No 35
>PRK01001 putative inner membrane protein translocase component YidC; Provisional
Probab=22.03 E-value=1.3e+02 Score=39.56 Aligned_cols=89 Identities=22% Similarity=0.379 Sum_probs=43.0
Q ss_pred eEeEEEecCCCCCCCcccCCC-------CcchhhhhhchHHHHHHHHHHHhhhhh----------hhhhhHHHH--hhhh
Q 000752 960 VHRMYFMGPNTFSQPWHLPHT-------PPEQIKEIVYEGAFNSFVDEINAIATY----------HWWEGAIYS--ILAI 1020 (1303)
Q Consensus 960 v~RmY~~G~NT~~~PW~Lp~s-------pP~~i~~ivyed~fn~Fad~iN~laay----------~~we~~iy~--iLsv 1020 (1303)
..|+ ++|++.++.==.+... .|+.++.+++..-|.-++.=||++.-| .||=.+|.. ++++
T Consensus 511 ~~~l-Y~GPkd~~~Lk~~~~~~~~~~~~~~~~l~~i~~~GWf~fI~~Pia~~L~~ll~~fh~l~GnwGlAIILlTIIVRL 589 (795)
T PRK01001 511 RFLV-YAGPLADPTLKTLDRAYTNSKGENPEYLDSITFRGFFSFITEPFAALLFIIMKFFKFLTGSWGISIILLTVFLKL 589 (795)
T ss_pred EEEE-EeCCCcHHHHHHhhhhcccccccccchhhhhhhccHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 3444 4688665532222211 345566666655555555555555433 233222222 5667
Q ss_pred hhcchhHHHHHHHHHHHHHHH---HHHHHhhcCc
Q 000752 1021 LAYPLAWSWQQWRRRMKLQRL---REYVRSEYDH 1051 (1303)
Q Consensus 1021 l~YPlaw~~lq~rRrkk~~rL---~efv~seydh 1051 (1303)
+.+|+.+. |++..+|+++| .+=++++|+.
T Consensus 590 lLlPLtiK--S~kSmaKMq~LQPemqeIQeKYKd 621 (795)
T PRK01001 590 LLYPLNAW--SIRSMRRMQKLSPYIQEIQQKYKK 621 (795)
T ss_pred HHhccHHH--HHHHHHHHHHhhHHHHHHHHHhHh
Confidence 78999753 33333344333 2333445654
No 36
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=20.86 E-value=1.6e+02 Score=35.44 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=15.9
Q ss_pred cccceEEEeecccccccccc
Q 000752 1098 HRFPMSLIFGGDGSYMAPFS 1117 (1303)
Q Consensus 1098 ~~~Pm~Iif~GdGSf~~Pf~ 1117 (1303)
.--.|+|-.||||+|+--=+
T Consensus 104 ~waD~VisvGGDGTfL~Aas 123 (395)
T KOG4180|consen 104 RWADMVISVGGDGTFLLAAS 123 (395)
T ss_pred chhhEEEEecCccceeehhh
Confidence 33468888999999997766
No 37
>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]
Probab=20.21 E-value=71 Score=42.23 Aligned_cols=30 Identities=20% Similarity=0.329 Sum_probs=19.2
Q ss_pred hhcccccccCCeEEEEEEEEee-------ceeeEEEe
Q 000752 1169 THANPTLQLHGLRVDLAWFQAT-------ACGYCQYG 1198 (1303)
Q Consensus 1169 ~h~n~~l~~~gvrv~l~~fq~~-------~~g~~q~g 1198 (1303)
+|.-|......+.-+|..+|-. +.-||.-|
T Consensus 630 ~W~pP~~pNG~lt~Ylv~wer~~~~~yl~~~nYC~~~ 666 (1025)
T KOG4258|consen 630 KWKPPSQPNGNLTHYLVVWERQAEDGYLEQRNYCHKG 666 (1025)
T ss_pred EecCCCCCCCceeEEEEEEEeccCCchHHHhcccccc
Confidence 4544444466688888888876 34466666
Done!