Query 000752
Match_columns 1303
No_of_seqs 196 out of 199
Neff 4.0
Searched_HMMs 29240
Date Tue Mar 26 15:52:42 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000752.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_525-529//hhsearch_pdb/000752hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fl7_A Ephrin receptor; ATP-bi 1.0 1 1 41.0 1.7 36 807-844 265-302 (536)
2 2e4u_A Metabotropic glutamate 1.0 1 1 37.9 0.4 40 804-847 484-532 (555)
3 3u3p_A Tumor necrosis factor r 1.0 1 1 35.3 3.7 36 805-841 25-69 (313)
4 1jma_B Herpesvirus entry media 1.0 1 1 34.7 4.2 65 804-873 14-89 (167)
5 3tje_F Tumor necrosis factor r 1.0 1 1 34.1 3.6 64 806-874 44-120 (156)
6 2uwi_A CRME protein; receptor, 1.0 1 1 33.9 3.9 64 804-873 15-89 (142)
7 3me4_A Tumor necrosis factor r 1.0 1 1 33.5 3.8 68 801-873 41-119 (216)
8 2hey_R Tumor necrosis factor r 1.0 1 1 33.3 3.2 62 806-873 19-91 (146)
9 3alq_R Tumor necrosis factor r 1.0 1 1 33.0 3.8 65 804-873 20-94 (173)
10 1du3_A Death receptor 5; trail 1.0 1 1 32.9 4.2 67 802-874 21-93 (130)
No 1
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Probab=1.00 E-value=1 Score=40.98 Aligned_cols=36 Identities=28% Similarity=0.630 Sum_probs=29.5
Q ss_pred CCCCCCCC--CCCCEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 57999866--754311899831154799998741389999
Q 000752 807 KACPKGLY--GIFCEECPVGTYKNVTGSDKSLCHQCPPQE 844 (1303)
Q Consensus 807 ~~CP~G~y--G~fC~eCP~GtYK~~sGs~~~~C~pCp~~~ 844 (1303)
=.|.+||. +..|+.||.|+||...+ ...|.+||.+.
T Consensus 265 C~C~~G~e~~~~~C~aC~~g~~k~~~~--~~~C~~CP~~S 302 (536)
T 3fl7_A 265 CLCQAGYEKVEDACQACSPGFFKFEAS--ESPCLECPEHT 302 (536)
T ss_dssp CEECTTEEEETTEEEECCTTEECCSCC--SSCCEECCSSE
T ss_pred EECCCCCCCCCCEEEECCCCCCCCCCC--CCCCCCCCCCC
T ss_conf 766676446996554258998766678--98500688877
No 2
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=1.00 E-value=1 Score=37.94 Aligned_cols=40 Identities=23% Similarity=0.571 Sum_probs=29.8
Q ss_pred EECCCCCCCCCC---------CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 984579998667---------54311899831154799998741389999888
Q 000752 804 TTGKACPKGLYG---------IFCEECPVGTYKNVTGSDKSLCHQCPPQEFPH 847 (1303)
Q Consensus 804 i~g~~CP~G~yG---------~fC~eCP~GtYK~~sGs~~~~C~pCp~~~~p~ 847 (1303)
+-...||||+.+ +-|++||.|.+. + |...|.+||.+..|+
T Consensus 484 ~CS~~C~pG~rk~~~~g~~CC~~C~~C~~~~~~--t--d~~~C~~Cp~~~wpn 532 (555)
T 2e4u_A 484 QCSDPCAPNEMKNMQPGDVCCWICIPCEPYEYL--V--DEFTCMDCGPGQWPT 532 (555)
T ss_dssp CSSCCCCTTTEEEECCSSSSCCEEEECCTTEEE--E--ETTEEEECCTTEEEC
T ss_pred EECCCCCCCEEEEECCCCEEEEECCCCCCCEEC--C--CCCCCEECCCCCCCC
T ss_conf 317977998055405897368978657775003--7--786644688323769
No 3
>3u3p_A Tumor necrosis factor receptor superfamily member; trigger apoptosis, apoptosis; 2.09A {Homo sapiens} PDB: 3u3q_A 3u3s_A 3u3t_A 3u3v_A 3qo4_A
Probab=1.00 E-value=1 Score=35.34 Aligned_cols=36 Identities=39% Similarity=0.923 Sum_probs=19.7
Q ss_pred ECCCCCCCCC---------CCCCEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8457999866---------754311899831154799998741389
Q 000752 805 TGKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCP 841 (1303)
Q Consensus 805 ~g~~CP~G~y---------G~fC~eCP~GtYK~~sGs~~~~C~pCp 841 (1303)
.=..||+|+| ...|++||.|+|+..... ...|.+|.
T Consensus 25 CC~~CpPGtyv~~~Ct~~~dt~C~pCp~GtYt~~~N~-~~~C~~C~ 69 (313)
T 3u3p_A 25 TCDKCPAGTYVSEHCTNTSLRVCSSCPVGTFTRHENG-IEKCHDCS 69 (313)
T ss_dssp EEECBCTTEEEEECCBTTBCCEEEECCTTEECCSCBC-CSSCEECC
T ss_pred CCCCCCCCCEECCCCCCCCCCCCCCCCCCCEECCCCC-CCCCCCCC
T ss_conf 8889799932667678999974316999856026887-88081446
No 4
>1jma_B Herpesvirus entry mediator; V-type IG molecule and TNFR superfamily, viral protein; HET: NAG; 2.65A {Human herpesvirus 1} SCOP: g.24.1.1 g.24.1.1 PDB: 2aw2_B*
Probab=1.00 E-value=1 Score=34.69 Aligned_cols=65 Identities=26% Similarity=0.516 Sum_probs=39.8
Q ss_pred EECCCCCCCCC---------CCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCC-CEEEEECCC-CCCCCCCCCCCCCCC
Q ss_conf 98457999866---------7543118998311547999987413899998886-138862188-558888752137875
Q 000752 804 TTGKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHR-AVYISVRGG-IAETPCPYRCISERY 872 (1303)
Q Consensus 804 i~g~~CP~G~y---------G~fC~eCP~GtYK~~sGs~~~~C~pCp~~~~p~r-a~~iyv~~G-~~~~~CpY~C~sd~~ 872 (1303)
..=..||+|+| ...|++||.|+|+..... ...|.+|+. -+.. ..+....-. ...+.| .|.+++|
T Consensus 14 ~~C~~CppG~~~~~~C~~~~~t~C~~Cp~GtY~~~~n~-~~~C~~C~~--C~~~~g~~~~~~Ct~t~~t~C--~C~~G~y 88 (167)
T 1jma_B 14 ECCPKCSPGYRVKEACGELTGTVCEPCPPGTYIAHLNG-LSKCLQCQM--CDPAMGLRASRNCSRTENAVC--GCSPGHF 88 (167)
T ss_dssp BCCBCBCTTEEEEECCCSSSCCEEEECCTTEECSSCBC-SSCCEECCC--CCTTTTEEEEECCCSSSCCEE--EECTTEE
T ss_pred CCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCC--CCCCCCEEEECCCCCCCCCCC--CCCCCCE
T ss_conf 28888899987656789999985772989951366676-763648744--566788688556788888700--3899965
Q ss_pred C
Q ss_conf 6
Q 000752 873 H 873 (1303)
Q Consensus 873 ~ 873 (1303)
.
T Consensus 89 ~ 89 (167)
T 1jma_B 89 C 89 (167)
T ss_dssp E
T ss_pred E
T ss_conf 2
No 5
>3tje_F Tumor necrosis factor receptor superfamily member; agonistic antibody, FAB fragment, antibody-receptor complex, cysteine-rich domain, FAS, immune; HET: EDO; 1.93A {Homo sapiens} PDB: 3thm_F*
Probab=1.00 E-value=1 Score=34.06 Aligned_cols=64 Identities=23% Similarity=0.399 Sum_probs=34.4
Q ss_pred CCCCCCCCC----------CCCCEECCCC-CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC--CCCCCCCCCCCCCCC
Q ss_conf 457999866----------7543118998-311547999987413899998886138862188--558888752137875
Q 000752 806 GKACPKGLY----------GIFCEECPVG-TYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGG--IAETPCPYRCISERY 872 (1303)
Q Consensus 806 g~~CP~G~y----------G~fC~eCP~G-tYK~~sGs~~~~C~pCp~~~~p~ra~~iyv~~G--~~~~~CpY~C~sd~~ 872 (1303)
=..||||+| ...|++||.| +|..... ....|.+|.. -........++.. .+.+.| .|.+++|
T Consensus 44 C~~CppG~~v~~~Ct~~~~~t~C~pC~~g~ty~~~~n-~~~~C~~C~~--C~~~~g~~~~~~CT~t~dtvC--~C~~G~f 118 (156)
T 3tje_F 44 HKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAH-FSSKCRRCRL--CDEGHGLEVEINCTRTQNTKC--RCKPNFF 118 (156)
T ss_dssp SSCBCTTEEESSCCCSSSCCCCEEECCTTTEECSSCB-SCSCCEECCC--CCGGGTEEEEECCBTTBCCEE--EECTTEE
T ss_pred CCCCCCCCEECCCCCCCCCCCCCEECCCCCEEECCCC-CCCCCCCCCC--CCCCCCEEEECCCCCCCCCEE--ECCCCCE
T ss_conf 8889989717776889998976503989870403689-8772757887--788844478646647789711--2899987
Q ss_pred CC
Q ss_conf 68
Q 000752 873 HM 874 (1303)
Q Consensus 873 ~~ 874 (1303)
-.
T Consensus 119 c~ 120 (156)
T 3tje_F 119 CN 120 (156)
T ss_dssp CC
T ss_pred EC
T ss_conf 68
No 6
>2uwi_A CRME protein; receptor, poxvirus TNF receptor, receptor immunomodulator, TNF alpha receptor; 2.0A {Vaccinia virus}
Probab=1.00 E-value=1 Score=33.88 Aligned_cols=64 Identities=25% Similarity=0.580 Sum_probs=40.7
Q ss_pred EECCCCCCCCC---------CCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC--CCCCCCCCCCCCCCC
Q ss_conf 98457999866---------7543118998311547999987413899998886138862188--558888752137875
Q 000752 804 TTGKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGG--IAETPCPYRCISERY 872 (1303)
Q Consensus 804 i~g~~CP~G~y---------G~fC~eCP~GtYK~~sGs~~~~C~pCp~~~~p~ra~~iyv~~G--~~~~~CpY~C~sd~~ 872 (1303)
.-=+.||||+| ...|++||.|+|...... ...|.+|..-. + ...+-++.. .+.+.| .|.+++|
T Consensus 15 ~cC~~CppG~~~~~~C~~~~~t~C~pC~~gty~~~~n~-~~~C~~C~~C~-~--~~~~~~~~Ct~t~dtvC--~C~~G~y 88 (142)
T 2uwi_A 15 KCCKLCKPGTYSDHRCDKYSDTICGHCPSDTFTSIYNR-SPWCHSCRGPC-G--TNRVEVTPCTPTTNRIC--HCDSNSY 88 (142)
T ss_dssp EEEECBCTTEEEEECCCSSCCCEEEECCTTEECCSSBC-CSSCEECCCCC-C--TTEEEEECCBTTBCCEE--EECTTEE
T ss_pred CCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCC-C--CCEEEEECCCCCCCCEE--ECCCCCE
T ss_conf 88878988974676688998975675899977456898-98467876705-6--88567615989879981--1899968
Q ss_pred C
Q ss_conf 6
Q 000752 873 H 873 (1303)
Q Consensus 873 ~ 873 (1303)
.
T Consensus 89 c 89 (142)
T 2uwi_A 89 C 89 (142)
T ss_dssp E
T ss_pred E
T ss_conf 5
No 7
>3me4_A Tumor necrosis factor receptor superfamily member; RANK, rankl, rankl-RANK complex, tnfsf11, tnfrsf11A, TNF SUP signaling protein; 2.01A {Mus musculus} PDB: 3me2_R 3qbq_B 4giq_R* 3nzy_B
Probab=1.00 E-value=1 Score=33.45 Aligned_cols=68 Identities=18% Similarity=0.325 Sum_probs=41.3
Q ss_pred CCEEECCCCCCCCC---------CCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC--CCCCCCCCCCCC
Q ss_conf 95198457999866---------7543118998311547999987413899998886138862188--558888752137
Q 000752 801 NGTTTGKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGG--IAETPCPYRCIS 869 (1303)
Q Consensus 801 nGTi~g~~CP~G~y---------G~fC~eCP~GtYK~~sGs~~~~C~pCp~~~~p~ra~~iyv~~G--~~~~~CpY~C~s 869 (1303)
.+..-=+.||||+| ...|++||.|+|...... ...|.+|+. -........++.. .+.+.|. |.+
T Consensus 41 ~~~~CC~~CppG~~~~~~Ct~~~~t~C~pC~~gtY~~~~n~-~~~C~~C~~--C~~~~~~~~~~~Ct~t~dtvC~--C~~ 115 (216)
T 3me4_A 41 HLGRCCSRCEPGKYLSSKCTPTSDSVCLPCGPDEYLDTWNE-EDKCLLHKV--CDAGKALVAVDPGNHTAPRRCA--CTA 115 (216)
T ss_dssp ETTEEEECBCTTEEEEECCBTTBCCEEEECCTTEECCSSBC-CSSCEECCC--CCGGGTEEEESTTCSSSCCEEE--ECT
T ss_pred CCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCEECCCCC-CCCCCCCCC--CCCCCCEEEEECCCCCCCCCCC--CCC
T ss_conf 67888689998955635689999982032899976257898-876978888--7887576887247788885025--879
Q ss_pred CCCC
Q ss_conf 8756
Q 000752 870 ERYH 873 (1303)
Q Consensus 870 d~~~ 873 (1303)
++|-
T Consensus 116 G~y~ 119 (216)
T 3me4_A 116 GYHW 119 (216)
T ss_dssp TEEE
T ss_pred CEEC
T ss_conf 9470
No 8
>2hey_R Tumor necrosis factor receptor superfamily member; cytokine, receptor-ligan complex, CO-stimulator, TNFSF; 2.00A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 2hev_R
Probab=1.00 E-value=1 Score=33.31 Aligned_cols=62 Identities=24% Similarity=0.426 Sum_probs=38.1
Q ss_pred CCCCCCCCC---------CCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCC-CEEEEECCC-CCCCCCCCCCCCCCCC
Q ss_conf 457999866---------7543118998311547999987413899998886-138862188-5588887521378756
Q 000752 806 GKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHR-AVYISVRGG-IAETPCPYRCISERYH 873 (1303)
Q Consensus 806 g~~CP~G~y---------G~fC~eCP~GtYK~~sGs~~~~C~pCp~~~~p~r-a~~iyv~~G-~~~~~CpY~C~sd~~~ 873 (1303)
=+.||+|.| ...|++||.|+|....+. ..|.+|+. -+.. ..++...-. ...+.| .|.+++|.
T Consensus 19 C~~C~pG~~~~~~Ct~~~~t~C~~C~~gty~~~~~~--~~C~~C~~--C~~~~g~~~~~~Ct~t~dt~C--~C~~G~y~ 91 (146)
T 2hey_R 19 CHECRPGNGMVSRCSRSQNTVCRPCGPGFYNDVVSS--KPCKPCTW--CNLRSGSERKQLCTATQDTVC--RCRAGTQP 91 (146)
T ss_dssp EECBCTTEEEEECCCSSCCCEEEECCTTEECCSCBS--SCCEECCC--CCGGGTEEEEECCBTTBCCEE--EECTTEEE
T ss_pred CCCCCCCCEECCCCCCCCCCCCCCCCCCCEECCCCC--CCCCCCCC--CCCCCCCEEECCCCCCCCCCC--CCCCCEEE
T ss_conf 989898970405578998987554999888788888--74866687--887778367616766778644--47787060
No 9
>3alq_R Tumor necrosis factor receptor superfamily member; ligand-receptor complex, cytokine, cytokine-cytokine recepto; 3.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=33.02 Aligned_cols=65 Identities=17% Similarity=0.341 Sum_probs=38.6
Q ss_pred EECCCCCCCCC---------CCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC-CCCCCCCCCCCCCCCC
Q ss_conf 98457999866---------7543118998311547999987413899998886138862188-5588887521378756
Q 000752 804 TTGKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGG-IAETPCPYRCISERYH 873 (1303)
Q Consensus 804 i~g~~CP~G~y---------G~fC~eCP~GtYK~~sGs~~~~C~pCp~~~~p~ra~~iyv~~G-~~~~~CpY~C~sd~~~ 873 (1303)
.-=+.||+|+| ...|++||.|+|+...+.. ..|.+|... -+. ..+....-. ...+.| .|.+++|.
T Consensus 20 ~cC~~C~pG~~~~~~C~~~~~t~C~~C~~gty~~~~n~~-~~C~~C~~~-C~~-g~~~~~~Ct~t~d~~C--~C~~G~y~ 94 (173)
T 3alq_R 20 MCCSKCSPGQHAKVFCTKTSDTVCDSCEDSTYTQLWNWV-PECLSCGSR-CSS-DQVETQACTREQNRIC--TCRPGWYC 94 (173)
T ss_dssp EEEECBCTTEEEEECCCSSCCCEEEECCTTEECCSSBCC-SSCEECCCC-CCT-TEEEEECCCSSSCCEE--EECTTEEE
T ss_pred CCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCC-CCC-CCEEECCCCCCCCCEE--ECCCCEEE
T ss_conf 689889879855666889998807769999641679989-805889884-799-9788447889879946--77898574
No 10
>1du3_A Death receptor 5; trail, DR5, complex; 2.20A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1d0g_R 2h9g_R 1za3_R 1d4v_A
Probab=1.00 E-value=1 Score=32.95 Aligned_cols=67 Identities=19% Similarity=0.396 Sum_probs=42.3
Q ss_pred CEEECCCCCCCCC----CCCCEECCCC-CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC-CCCCCCCCCCCCCCCCC
Q ss_conf 5198457999866----7543118998-311547999987413899998886138862188-55888875213787568
Q 000752 802 GTTTGKACPKGLY----GIFCEECPVG-TYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGG-IAETPCPYRCISERYHM 874 (1303)
Q Consensus 802 GTi~g~~CP~G~y----G~fC~eCP~G-tYK~~sGs~~~~C~pCp~~~~p~ra~~iyv~~G-~~~~~CpY~C~sd~~~~ 874 (1303)
....-..||||+| ...|++||.| +|...... ...|.+|.. -+. +.++...-. ...+.|. |.+++|..
T Consensus 21 ~~~~C~~CppG~~~~~~~t~C~pC~~g~ty~~~~n~-~~~C~~C~~--C~~-g~~~~~~Ct~t~dtvC~--C~~G~y~~ 93 (130)
T 1du3_A 21 SSPSEGLCPPGHHISEDGRDCISCKYGQDYSTHWND-LLFCLRCTR--CDS-GEVELSPCTTTRNTVCQ--CEEGTFRE 93 (130)
T ss_dssp CCCBTTBBCTTEEECSSSSCEEECCTTTEECCSSBC-CSSCEECCC--CCT-TEEEEECCCSSSCCEEE--ECTTCEEE
T ss_pred CCCCCCCCCCCCEECCCCCCCCCCCCCCEEECCCCC-CCCCCCCCC--CCC-CEEEECCCCCCCCCEEC--CCCCEEEC
T ss_conf 797058889986144899867209896987388998-771867777--885-20565367788899851--99996879
Done!