Query 000753
Match_columns 1302
No_of_seqs 519 out of 5806
Neff 7.4
Searched_HMMs 29240
Date Tue Mar 26 16:24:23 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000753.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_525-529//hhsearch_pdb/000753hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 1.0 1 1 667.4 50.1 772 182-1093 429-1300(1321)
2 3g5u_A MCG1178, multidrug resi 1.0 1 1 602.3 59.3 782 183-1093 402-1254(1284)
3 3bk7_A ABC transporter ATP-bin 1.0 1 1 465.3 34.5 437 185-1095 106-561 (607)
4 1yqt_A RNAse L inhibitor; ATP- 1.0 1 1 454.3 33.3 437 185-1095 36-491 (538)
5 3ux8_A Excinuclease ABC, A sub 1.0 1 1 454.1 37.1 215 183-432 30-297 (670)
6 2iw3_A Elongation factor 3A; a 1.0 1 1 452.4 40.5 427 184-1091 448-981 (986)
7 3ozx_A RNAse L inhibitor; ATP 1.0 1 1 444.4 33.2 203 881-1106 282-486 (538)
8 3j16_B RLI1P; ribosome recycli 1.0 1 1 430.3 31.6 201 881-1106 361-568 (608)
9 3pih_A Uvrabc system protein A 1.0 1 1 348.1 34.1 198 881-1093 598-898 (916)
10 2r6f_A Excinuclease ABC subuni 1.0 1 1 341.1 33.1 195 882-1092 639-937 (972)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=667.36 Aligned_cols=772 Identities=20% Similarity=0.267 Sum_probs=394.4
Q ss_pred CCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCC---CCEEEEECCCCCCCC
Q ss_conf 55257430177883782999984899987999999952839999764169989931688776---634999716898899
Q 000753 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHG 258 (1302)
Q Consensus 182 ~~~~IL~~VSg~ikpG~ltaIlGpsGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~aYV~Q~D~h~~ 258 (1302)
...++|+|+|+.++||++++|+||+|||||||+++|.|.+++. +|+|.+||+++++... ++.++||+|+++++.
T Consensus 429 ~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~---~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~ 505 (1321)
T 4f4c_A 429 PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVL---KGKITIDGVDVRDINLEFLRKNVAVVSQEPALFN 505 (1321)
T ss_dssp TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCCS
T ss_pred CCCCEEECEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCCCC---CCCCCCCCCCCHHCCHHHHHHCCCCCCCCCEEEC
T ss_conf 9874333318862288278998058985778888754565164---4861579965011259998504666587533207
Q ss_pred CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99999999861120277712567799669988519999912899999998400003457999999819963235433575
Q 000753 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (1302)
Q Consensus 259 ~lTVrEtL~Faa~~~~~~~~~~~~~~ls~~ek~~~i~~~~~~d~~~~a~~~~~~~~~~~~d~vl~~lGL~~~~dT~VG~~ 338 (1302)
.|||||+.|+.. +.+.+++.+|+..++.+ +. +-.|++..||.||+
T Consensus 506 -~TI~eNI~~g~~-------------------------~~~~~~v~~a~~~a~l~-----~~---i~~lp~G~~T~vGe- 550 (1321)
T 4f4c_A 506 -CTIEENISLGKE-------------------------GITREEMVAACKMANAE-----KF---IKTLPNGYNTLVGD- 550 (1321)
T ss_dssp -EEHHHHHHTTCT-------------------------TCCHHHHHHHHHHTTCH-----HH---HHHSTTTTSSEESS-
T ss_pred -CCHHHHHHHHCC-------------------------CCHHHHHHHHHHHCCCH-----HH---HHCCCCCCCCEECC-
T ss_conf -861678864155-------------------------22099999999875654-----68---87088888607558-
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEEC
Q ss_conf 67878957879999999994499787985798799999999999999999880896599998049115986349399954
Q 000753 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1302)
Q Consensus 339 ~~rGLSGGQKkRvsia~aLv~~~~vllLDEpTSGLDs~ta~~Iv~~Lr~la~~~~~Tviisl~Qps~ei~~lfD~IilLs 418 (1302)
.+..||||||||++||||++.+|++++||||||+||+.+...|.++|+++.+ ++|+|+..|+. ++...+|+|++|.
T Consensus 551 ~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~iiiaHrl--s~i~~aD~Iivl~ 626 (1321)
T 4f4c_A 551 RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK--GRTTIIIAHRL--STIRNADLIISCK 626 (1321)
T ss_dssp SSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT--TSEEEEECSCT--TTTTTCSEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCEEEEECCCH--HHHHHCCEEEEEE
T ss_conf 9887777787999999987259998998455446887899999999999847--98899973638--7898689899963
Q ss_pred CCEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHH--HHHCCCCCHHHH--HHHCC---------CCCC--CCCHHHHHHH
Q ss_conf 9918997295679999986398789999967799--752272001244--64049---------9987--7996589999
Q 000753 419 EGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFL--QEVTSKKDQEQY--WFRKN---------QPYR--YIPVSDFVEG 483 (1302)
Q Consensus 419 ~G~ivy~Gp~~~~~~~F~~lGf~cp~~~~~adfl--~ev~s~~~~~~~--~~~~~---------~~~~--~~~~~~f~~~ 483 (1302)
+|+|+.+|+++++++- .| .-++.. |......+.... ..... .... ....++....
T Consensus 627 ~G~ive~Gth~eL~~~---~g-------~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1321)
T 4f4c_A 627 NGQVVEVGDHRALMAQ---QG-------LYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMNR 696 (1321)
T ss_dssp TTEEEEEECHHHHHTT---TC-------HHHHHHHHHHHHHHHHHHHCC-------------------------------
T ss_pred CCEEECCCCHHHHHHH---HH-------HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 9965136899999985---32-------7999999622122223323344332232111222223422222221102211
Q ss_pred HHHCHHCHHHHHHHCCCC-CCCCCC--CCC--------CCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
Q ss_conf 971700076885303977-766679--876--------555665660899999999999999831838999999999999
Q 000753 484 FKSFHMGQQIASDLRVPY-DKSQAH--PAS--------LVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFM 552 (1302)
Q Consensus 484 ~~~s~~~~~~~~~l~~~~-~~~~~~--~~~--------~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~i~ 552 (1302)
.+.+...... ..+. +..... ... ........+.+..++ ..+..+..++.-.+...+.
T Consensus 697 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~i~ 764 (1321)
T 4f4c_A 697 VRSSTIGSIT----NGPVIDEKEERIGKDALSRLKQELEENNAQKTNLFEILY--------HARPHALSLFIGMSTATIG 764 (1321)
T ss_dssp -----------------------CCCCCCHHHHHHHTTTTSCCCCCCHHHHHH--------HTGGGHHHHHHHHHHHHHG
T ss_pred HHCCCCCCCC----CCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCEEHHHHHH--------HHHHHHHHHHHHHHHHHHH
T ss_conf 1013212456----774025777531540389999999970786310999999--------9877899999999999999
Q ss_pred HHH--HHHHHH----CC-CCCCCCCCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 999--988763----45-577778788401678999999999--997899999986112466661115654236689989
Q 000753 553 SLI--CMTVYF----RT-EMSVGDMNGGSRYFGALFFSLLNI--MFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPI 623 (1302)
Q Consensus 553 ali--~gtvf~----~~-~~~~~~~~~~~~~~g~lff~ll~~--~~~~~~~~~~~~~~~pvf~kqr~~~~y~~~a~~la~ 623 (1302)
+.+ ...+++ .. ..+.........++..+|+.+... .+..+...........+-.+-|.. +-.
T Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~---------l~~ 835 (1321)
T 4f4c_A 765 GFIYPTYSVFFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNK---------LFR 835 (1321)
T ss_dssp GGHHHHHHHHHHHHHHHTSSCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHH
T ss_conf 99999999999999987517934556678999999999999999999999999999999999999999---------988
Q ss_pred HHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCCCHHHHHHHH--HH
Q ss_conf 99861289898999987886604886128799999999999999---------79999999998304157888899--99
Q 000753 624 WLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHN---------MSLPLYRLVAAVGRTEVISNTLG--TF 692 (1302)
Q Consensus 624 ~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~l~~~~~~~---------~~~~lf~~iaa~~~~~~~a~~~~--~~ 692 (1302)
.++..|+.+++. -....++....+........ ....++.+++++.-.......++ .+
T Consensus 836 ~il~~~~~ffd~------------~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~lv~l 903 (1321)
T 4f4c_A 836 NVLSQHIGFFDS------------PQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLII 903 (1321)
T ss_dssp HHHTSCSSSTTS------------GGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHCCCCHHHCC------------CCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHH
T ss_conf 873499333216------------78884888850250599999999999999999865377770221378689999999
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCH--
Q ss_conf 999999876402247980457899997829999999999987508844457899888666336888865296546721--
Q 000753 693 ILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNW-- 770 (1302)
Q Consensus 693 ~~~~~~l~~Gf~i~~~~ip~~~~W~~~isP~~Y~~~al~~nef~~~~~~~~~~~~~~~~~~~G~~~l~~~g~~~~~~~-- 770 (1302)
++++++.+..++..+.......... . .++.......|.. .|...+.. |..+..+
T Consensus 904 ~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~e~l-----------------~gi~tIra--~~~e~~~~~ 959 (1321)
T 4f4c_A 904 AILPIVAFGQYLRGRRFTGKNVKSA---S--EFADSGKIAIEAI-----------------ENVRTVQA--LAREDTFYE 959 (1321)
T ss_dssp HHHHHHHHHHHHHTSCCSSCSTTTS---S--HHHHHHHHHHHHH-----------------HTHHHHHH--TTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---H--HHHHHHHHHHHHH-----------------HHHHHHHH--CCCHHHHHH
T ss_conf 9888999999999999999999999---9--9888988999999-----------------62798886--141488999
Q ss_pred -----------------HHH--HHHHHHHH-HHHHHHHHHHHHHHCCCCCCCCCC--E-----------------EECCC
Q ss_conf -----------------667--89999999-999999999999833878999852--2-----------------10100
Q 000753 771 -----------------YWI--GVGALTGY-SFLFNFLFIAALAYLNPIGDSNST--V-----------------IEEDG 811 (1302)
Q Consensus 771 -----------------~w~--~~g~l~~~-~~lf~~l~~~~l~~~~~~~~~~~~--~-----------------~~~~~ 811 (1302)
.+. ..+..... .+...+.++++............. . .....
T Consensus 960 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 1039 (1321)
T 4f4c_A 960 NFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFP 1039 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999987578875376542147899999999877889999999999
Q ss_pred HHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEECCCCCCCCCCCCCCCEEECCCCEEEC
Q ss_conf 23210473000012221145444455434457764445578178983330135335221235545565055101200001
Q 000753 812 EKQRASGHEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFR 891 (1302)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~ 891 (1302)
....... ..+........ ..........+ ..+.....++|+|+++.++.. ....+|+|+|+.++
T Consensus 1040 ~~~~~~~-a~~ri~~~l~~----~~~~~~~~~~~-~~~~~~g~I~f~nVsf~Y~~~----------~~~~VL~~isl~I~ 1103 (1321)
T 4f4c_A 1040 EYAKATF-AGGIIFGMLRK----ISKIDSLSLAG-EKKKLYGKVIFKNVRFAYPER----------PEIEILKGLSFSVE 1103 (1321)
T ss_dssp HHHHHHH-HHHHHHHHHHC----CCSSCTTCCCS-BCCCCCCCEEEEEEEECCTTS----------CSSCSEEEEEEEEC
T ss_pred HHHHHHH-HHHHHHHHHHC----CCCCCCCCCCC-CCCCCCCEEEEEEEEEECCCC----------CCCCCCCCEEEEEC
T ss_conf 9999999-99989998607----66577766778-788888818999879857999----------98821245169988
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCH---HHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 88099995579995687996152897786258899996903893---423011679613798899999899999888730
Q 000753 892 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLR 968 (1302)
Q Consensus 892 ~G~~~ai~G~sGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr 968 (1302)
||+.+||+|+||||||||+++|.|..+ +.+|.|.+||.+... ..+|+.++||||++.+++. |++||+.|..
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gl--- 1177 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERFYD--TLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGL--- 1177 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTSSC--CSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSS---
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEHHHCCHHHHHHHEEEECCCCEEECC-CHHHHHHCCC---
T ss_conf 989999989999819999999956863--8997899999986549999998545998789973272-3999974549---
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCC-------CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
Q ss_conf 79997589999999999998399664-------33324699988889999999999999963999831027999999999
Q 000753 969 LSSDVDTKKRKMFVDEVMELVELKSL-------NDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1041 (1302)
Q Consensus 969 ~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~~~~~LSgGqrkrl~ia~~L~~~p~il~LDEPTsgLD~~~ 1041 (1302)
.+.+.+ ++.++++++..++.+. .|+.+|..|. .||||||||++|||+|+++|+||+||||||+||+++
T Consensus 1178 d~~~~s----d~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~-~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~t 1252 (1321)
T 4f4c_A 1178 DPSSVT----MAQVEEAARLANIHNFIAELPEGFETRVGDRGT-QLSGGQKQRIAIARALVRNPKILLLDEATSALDTES 1252 (1321)
T ss_dssp CTTTSC----HHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSC-SSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHH
T ss_pred CCCCCC----HHHHHHHHHHHCCHHHHHCCCCCCCCEECCCCC-CCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHH
T ss_conf 999999----999999999829849997176789998238891-569999999999999971799899968111578999
Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCCC
Q ss_conf 9999999999872998799992685299998508198993695999916898
Q 000753 1042 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1302)
Q Consensus 1042 ~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~~D~~l~l~~gG~~~~~G~~~ 1093 (1302)
.+.|++.|++.. +|+|+|+++|+++ ....+|++++|. +|++++.|++.
T Consensus 1253 E~~Iq~~l~~~~-~~~TvI~IAHRLs--Ti~~aD~I~Vld-~G~IvE~Gth~ 1300 (1321)
T 4f4c_A 1253 EKVVQEALDRAR-EGRTCIVIAHRLN--TVMNADCIAVVS-NGTIIEKGTHT 1300 (1321)
T ss_dssp HHHHHHHHTTTS-SSSEEEEECSSSS--TTTTCSEEEEES-SSSEEEEECHH
T ss_pred HHHHHHHHHHHC-CCCEEEEECCCHH--HHHHCCEEEEEE-CCEEEEECCHH
T ss_conf 999999999973-9998999606899--999699999998-98999988889
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=602.29 Aligned_cols=782 Identities=19% Similarity=0.227 Sum_probs=377.3
Q ss_pred CCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCC---CCEEEEECCCCCCCCC
Q ss_conf 5257430177883782999984899987999999952839999764169989931688776---6349997168988999
Q 000753 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGE 259 (1302)
Q Consensus 183 ~~~IL~~VSg~ikpG~ltaIlGpsGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~aYV~Q~D~h~~~ 259 (1302)
..++|+|+|+.++||+.++|+||+|||||||+++|+|.++++ +|+|.++|+++.+... ++.++||+|++++++.
T Consensus 402 ~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ 478 (1284)
T 3g5u_A 402 EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL---DGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT 478 (1284)
T ss_dssp SCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSS
T ss_pred CCCCEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CEEEEECCEEHHHCCHHHHHHHEEEECCCCCCCCC
T ss_conf 871012545897599889998999997999999980788999---73899999987757999998654898688753776
Q ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999998611202777125677996699885199999128999999984000034579999998199632354335756
Q 000753 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1302)
Q Consensus 260 lTVrEtL~Faa~~~~~~~~~~~~~~ls~~ek~~~i~~~~~~d~~~~a~~~~~~~~~~~~d~vl~~lGL~~~~dT~VG~~~ 339 (1302)
||+||+.|+..-. +.++..+++..++. .+. +..|++..||.||. .
T Consensus 479 -ti~eNi~~g~~~~-------------------------~~~~~~~~~~~~~~-----~~~---i~~l~~g~~t~~~~-~ 523 (1284)
T 3g5u_A 479 -TIAENIRYGREDV-------------------------TMDEIEKAVKEANA-----YDF---IMKLPHQFDTLVGE-R 523 (1284)
T ss_dssp -CHHHHHHHHCSSC-------------------------CHHHHHHHHHHTTC-----HHH---HHHSTTGGGCCCSS-S
T ss_pred -CHHHHHHCCCCCC-------------------------CHHHHHHHHHHHCC-----HHH---HHHCCCCCCCCCCC-C
T ss_conf -6999974579899-------------------------99999999998296-----999---97465633450147-8
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECC
Q ss_conf 78789578799999999944997879857987999999999999999998808965999980491159863493999549
Q 000753 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1302)
Q Consensus 340 ~rGLSGGQKkRvsia~aLv~~~~vllLDEpTSGLDs~ta~~Iv~~Lr~la~~~~~Tviisl~Qps~ei~~lfD~IilLs~ 419 (1302)
...||||||||++||++++.+|++++||||||+||+.+...+.+.++...+ ++|+|+..|.. ++...+|+|++|.+
T Consensus 524 g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l--~~i~~~d~i~vl~~ 599 (1284)
T 3g5u_A 524 GAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKARE--GRTTIVIAHRL--STVRNADVIAGFDG 599 (1284)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHT--TSEEEEECSCH--HHHTTCSEEEECSS
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCH--HHHHCCCEEEEEEC
T ss_conf 786599999999999999529998999798777799999999999999739--99899994077--89974998999989
Q ss_pred CEEEEECCHHHHHH----HHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCHHCHHHHH
Q ss_conf 91899729567999----99863987899999677997522720012446404999877996589999971700076885
Q 000753 420 GQIVYQGPRDNVLE----FFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIAS 495 (1302)
Q Consensus 420 G~ivy~Gp~~~~~~----~F~~lGf~cp~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~~~~~f~~~~~~s~~~~~~~~ 495 (1302)
|+++++|+++++.+ |++-.--..... . .+...+.....+... ....+. .......... +.. ..
T Consensus 600 G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~-~~~------~~ 666 (1284)
T 3g5u_A 600 GVIVEQGNHDELMREKGIYFKLVMTQTAGN-E-IELGNEACKSKDEID---NLDMSS-KDSGSSLIRR-RST------RK 666 (1284)
T ss_dssp SCCCCEECHHHHHHTTSHHHHHHHHTC-----------------------------------------------------
T ss_pred CEEEEECCHHHHHHCCCHHHHHHHHHHHCC-C-CCCCCCCCCCCCCCC---CCCCCC-CCCCCCCCCC-CCC------CC
T ss_conf 999997889999867877999999743002-2-111333333222223---443333-3333200034-543------33
Q ss_pred HHCCCCC--CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHH-HHHHH---HHHHHHHHHHH---HHHCCCCC
Q ss_conf 3039777--6667987655566566089999999999999983183899-99999---99999999988---76345577
Q 000753 496 DLRVPYD--KSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVY-IFKTF---QLTFMSLICMT---VYFRTEMS 566 (1302)
Q Consensus 496 ~l~~~~~--~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~-~~~~~---~~~i~ali~gt---vf~~~~~~ 566 (1302)
....+.+ ................+.+..++. .++.| ...... ++.++ ...+...+.+. .+.....
T Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~- 740 (1284)
T 3g5u_A 667 SICGPHDQDRKLSTKEALDEDVPPASFWRILKL-NSTEW----PYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGP- 740 (1284)
T ss_dssp -----------------CCCCCSCCCTTHHHHH-HHHTC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS-
T ss_pred CCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHH-HCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-
T ss_conf 445642233211024555313662589999998-45157----999999999999999999999999999999855685-
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
Q ss_conf 77878840167899999999999--7899999986112466661115654236689989998612898989999878866
Q 000753 567 VGDMNGGSRYFGALFFSLLNIMF--NGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYY 644 (1302)
Q Consensus 567 ~~~~~~~~~~~g~lff~ll~~~~--~~~~~~~~~~~~~pvf~kqr~~~~y~~~a~~la~~i~~iP~~~~~~~i~~~i~Y~ 644 (1302)
.........+...+|..+....+ ..+...........+-.+-|. -+-..+...|+.+++.
T Consensus 741 ~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lr~---------~l~~~ll~~~~~ff~~--------- 802 (1284)
T 3g5u_A 741 PETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRY---------MVFKSMLRQDVSWFDD--------- 802 (1284)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHCCSHHHHS---------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHCCCHHHHCC---------
T ss_conf 0336779999999999999999999999999999999999999999---------9999998399888757---------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 0488612879999999999999979-------------999999998304157888899999999998764022479804
Q 000753 645 TIGYDPAASRFFKQFLAFFSIHNMS-------------LPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIE 711 (1302)
Q Consensus 645 ~~g~~~~~~~ff~~~l~~~~~~~~~-------------~~lf~~iaa~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~ip 711 (1302)
-....++....+.......... .....++..+.-+...+. ..++.++++++.+++
T Consensus 803 ---~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~l--v~l~~~p~~~~~~~~------- 870 (1284)
T 3g5u_A 803 ---PKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTL--LLLAIVPIIAIAGVV------- 870 (1284)
T ss_dssp ---CSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSSHH--HHHHHHHHHHHHHHH-------
T ss_pred ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-------
T ss_conf ---89988999999999999999999999999999999999999999999699999--999999999999999-------
Q ss_pred HHHHHHHHHCH------HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCC-----CCCC--CCHHHHHHHHH
Q ss_conf 57899997829------99999999998750884445789988866633688886529-----6546--72166789999
Q 000753 712 PFLRWGYYISP------MMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRG-----FSTE--SNWYWIGVGAL 778 (1302)
Q Consensus 712 ~~~~W~~~isP------~~Y~~~al~~nef~~~~~~~~~~~~~~~~~~~G~~~l~~~g-----~~~~--~~~~w~~~g~l 778 (1302)
...++.. -.+...+-...|....-...... .........+. .... ....|.++ .
T Consensus 871 ----~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~-------~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 937 (1284)
T 3g5u_A 871 ----EMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSL-------TREQKFETMYAQSLQIPYRNAMKKAHVFGI--T 937 (1284)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTC-------SSHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
T ss_conf ----999999999999999999999999999889999984-------659999999999999999999999999999--9
Q ss_pred HHHHHHHH-HHHHHHHH---HCCCCCCCC-CCEE-ECC---------CHHHHCCCCCCCHHHH--HHCCCCCCCCCCCCC
Q ss_conf 99999999-99999998---338789998-5221-010---------0232104730000122--211454444554344
Q 000753 779 TGYSFLFN-FLFIAALA---YLNPIGDSN-STVI-EED---------GEKQRASGHEAEGMQM--AVRSSSKTVGAAQNV 841 (1302)
Q Consensus 779 ~~~~~lf~-~l~~~~l~---~~~~~~~~~-~~~~-~~~---------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 841 (1302)
.++..... +.+.+.+. ++-..+... .... .-. ................ ...............
T Consensus 938 ~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~ 1017 (1284)
T 3g5u_A 938 FSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSY 1017 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCCSSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99999999999999999999999909806999999999999999999999999999999999999999998388766665
Q ss_pred CCCCCCCCCCCCEEEEECCCEEEECCCCCCCCCCCCCCCEEECCCCEEECCCEEEEEECCCCCCHHHHHHHHCCCCCCCE
Q ss_conf 57764445578178983330135335221235545565055101200001880999955799956879961528977862
Q 000753 842 TNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY 921 (1302)
Q Consensus 842 ~~~~~~~~~~~~~l~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~g~ 921 (1302)
...+...+.....++++|+++.++.. ....+|+|+|+.++|||++||+|+||||||||+++|+|..+ +
T Consensus 1018 ~~~~~~~~~~~g~i~~~~v~~~y~~~----------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~--p 1085 (1284)
T 3g5u_A 1018 STQGLKPNMLEGNVQFSGVVFNYPTR----------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD--P 1085 (1284)
T ss_dssp CSSCCCTTTTSCCEEEEEEEBCCSCG----------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC--C
T ss_pred CCCCCCCCCCCCCEEEEEEEEECCCC----------CCCEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--C
T ss_conf 55665456777857999989977999----------98700203059976998899988999978999999946867--8
Q ss_pred EEEEEEECCCCCCH---HHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC------
Q ss_conf 58899996903893---423011679613798899999899999888730799975899999999999983996------
Q 000753 922 IEGDIKISGYPKNQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK------ 992 (1302)
Q Consensus 922 ~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~------ 992 (1302)
.+|+|.++|.+... ..+++.++||+|++.++ ..|++||+.+.... ...+.+ .+++.++..++.
T Consensus 1086 ~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~ti~eNi~~~~~~---~~~~~~----~i~~~~~~~~~~~~i~~l 1157 (1284)
T 3g5u_A 1086 MAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDNS---RVVSYE----EIVRAAKEANIHQFIDSL 1157 (1284)
T ss_dssp SEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCC-SSBHHHHHTCCCSS---CCCCHH----HHHHHHHHHTCHHHHSST
T ss_pred CCCEEEECCEECCCCCHHHHHHCEEEECCCCCCC-CCCHHHHHHCCCCC---CCCCHH----HHHHHHHHHCCHHHHHHC
T ss_conf 9977989999800078999970268987787406-66699997466877---899999----999999983959999727
Q ss_pred -CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHH
Q ss_conf -6433324699988889999999999999963999831027999999999999999999987299879999268529999
Q 000753 993 -SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1071 (1302)
Q Consensus 993 -~~~~~~vg~~~~~~LSgGqrkrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~ 1071 (1302)
+-.|+.+|..| ..||||||||++|||+|+.+|+||+|||||+|||+.++..+++.+++.. .|+|||+++|+++ . .
T Consensus 1158 ~~gldt~vge~G-~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~-~~~tvi~isH~l~-~-i 1233 (1284)
T 3g5u_A 1158 PDKYNTRVGDKG-TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR-EGRTCIVIAHRLS-T-I 1233 (1284)
T ss_dssp TTGGGCBCSTTS-CSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS-SSSCEEEECSCTT-G-G
T ss_pred CCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHH-H-H
T ss_conf 042456117888-9338999999999999974999999868755579999999999999867-9998999955879-9-9
Q ss_pred HHCCEEEEEECCCEEEEECCCC
Q ss_conf 8508198993695999916898
Q 000753 1072 EAFDELLLLKRGGRVIYAGPLG 1093 (1302)
Q Consensus 1072 ~~~D~~l~l~~gG~~~~~G~~~ 1093 (1302)
..+|++++|. +|++++.|++.
T Consensus 1234 ~~~dri~vl~-~G~i~~~g~~~ 1254 (1284)
T 3g5u_A 1234 QNADLIVVIQ-NGKVKEHGTHQ 1254 (1284)
T ss_dssp GSCSEEEEEE-TBEEEEEECHH
T ss_pred HCCCEEEEEE-CCEEEEECCHH
T ss_conf 8099899998-99899977899
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=1.00 E-value=1 Score=465.26 Aligned_cols=437 Identities=24% Similarity=0.288 Sum_probs=310.5
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEE---------EECCCCCCCC-----CCCCEEEEE
Q ss_conf 57430177883782999984899987999999952839999764169---------9899316887-----766349997
Q 000753 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKI---------TYCGHELNEF-----VPQRTCAYI 250 (1302)
Q Consensus 185 ~IL~~VSg~ikpG~ltaIlGpsGSGKSTLL~~LaG~l~~~~~~sG~I---------~~nG~~~~~~-----~~~~~~aYV 250 (1302)
.+|+|+| .+++|++++|+|||||||||||++|+|.+.++ +|++ .++|.+.... ..+..++|+
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~---~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~ 181 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN---LCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVK 181 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC---TTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEE
T ss_pred EEECCCC-CCCCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCCCCCCCCHHHHEECCEEHHHHHHHHHHHHCCEEEE
T ss_conf 4048989-88989999999999972999999985799878---7854666301331368776134323455653446886
Q ss_pred CCCCCCCC---CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC
Q ss_conf 16898899---999999998611202777125677996699885199999128999999984000034579999998199
Q 000753 251 SQHDLHHG---EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGL 327 (1302)
Q Consensus 251 ~Q~D~h~~---~lTVrEtL~Faa~~~~~~~~~~~~~~ls~~ek~~~i~~~~~~d~~~~a~~~~~~~~~~~~d~vl~~lGL 327 (1302)
.|.....+ ..||+|++..... ...++.+++.+||
T Consensus 182 ~q~~~~~~~~~~~tv~e~l~~~~~-------------------------------------------~~~~~~~L~~lgL 218 (607)
T 3bk7_A 182 PQYVDLLPKAVKGKVRELLKKVDE-------------------------------------------VGKFEEVVKELEL 218 (607)
T ss_dssp CSCGGGGGGTCCSBHHHHHHHTCC-------------------------------------------SSCHHHHHHHTTC
T ss_pred ECHHHHCHHHCCCCHHHHHHHHHH-------------------------------------------HHHHHHHHHHCCC
T ss_conf 320431302200509999631679-------------------------------------------9999999997599
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHH
Q ss_conf 63235433575678789578799999999944997879857987999999999999999998808965999980491159
Q 000753 328 DICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPET 407 (1302)
Q Consensus 328 ~~~~dT~VG~~~~rGLSGGQKkRvsia~aLv~~~~vllLDEpTSGLDs~ta~~Iv~~Lr~la~~~~~Tviisl~Qps~ei 407 (1302)
++..|..+++ |||||||||+||++|+.+|++++|||||+|||..++.++.+.|+++.+ .+.|+|++.|.. .++
T Consensus 219 ~~~~~~~~~~-----LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvIivsHdl-~~~ 291 (607)
T 3bk7_A 219 ENVLDRELHQ-----LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGKAVLVVEHDL-AVL 291 (607)
T ss_dssp TTGGGSBGGG-----CCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCH-HHH
T ss_pred CCHHCCCHHH-----CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCH-HHH
T ss_conf 7043798056-----999999999999998459999999797435899999999999999986-699899996485-898
Q ss_pred HHHCCEEEEECCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHC
Q ss_conf 86349399954991899729567999998639878999996779975227200124464049998779965899999717
Q 000753 408 YDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSF 487 (1302)
Q Consensus 408 ~~lfD~IilLs~G~ivy~Gp~~~~~~~F~~lGf~cp~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~~~~~f~~~~~~s 487 (1302)
..++|+|++|.++...| |.. ..+
T Consensus 292 ~~~adri~vl~~~~~~~-g~~----------------------------------------~~~---------------- 314 (607)
T 3bk7_A 292 DYLSDVIHVVYGEPGVY-GIF----------------------------------------SKP---------------- 314 (607)
T ss_dssp HHHCSEEEEEESCTTTE-EEE----------------------------------------CCC----------------
T ss_pred HHHCCEEEEECCCCCCC-CEE----------------------------------------CCC----------------
T ss_conf 86589999977986445-212----------------------------------------241----------------
Q ss_pred HHCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 00076885303977766679876555665660899999999999999831838999999999999999988763455777
Q 000753 488 HMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSV 567 (1302)
Q Consensus 488 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~i~ali~gtvf~~~~~~~ 567 (1302)
+. . +... .. +.
T Consensus 315 ----------------------------~~--~---------~~~i------------------~~------~~------ 325 (607)
T 3bk7_A 315 ----------------------------KG--T---------RNGI------------------NE------FL------ 325 (607)
T ss_dssp ----------------------------EE--H---------HHHH------------------HH------HH------
T ss_pred ----------------------------HH--H---------HHHH------------------HH------HH------
T ss_conf ----------------------------32--7---------9999------------------99------97------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCC
Q ss_conf 78788401678999999999997899999986112466661115654236689989998612898989999878866048
Q 000753 568 GDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIG 647 (1302)
Q Consensus 568 ~~~~~~~~~~g~lff~ll~~~~~~~~~~~~~~~~~pvf~kqr~~~~y~~~a~~la~~i~~iP~~~~~~~i~~~i~Y~~~g 647 (1302)
T Consensus 326 -------------------------------------------------------------------------------- 325 (607)
T 3bk7_A 326 -------------------------------------------------------------------------------- 325 (607)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHHHHHH
Q ss_conf 86128799999999999999799999999983041578888999999999987640224798045789999782999999
Q 000753 648 YDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQ 727 (1302)
Q Consensus 648 ~~~~~~~ff~~~l~~~~~~~~~~~lf~~iaa~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isP~~Y~~ 727 (1302)
.|+. +...+
T Consensus 326 -----------------------------------------------------~~~~-~~~~~----------------- 334 (607)
T 3bk7_A 326 -----------------------------------------------------QGYL-KDENV----------------- 334 (607)
T ss_dssp -----------------------------------------------------HTEE-TTTTE-----------------
T ss_pred -----------------------------------------------------HHCC-HHHHH-----------------
T ss_conf -----------------------------------------------------5101-34554-----------------
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE
Q ss_conf 99999875088444578998886663368888652965467216678999999999999999999983387899985221
Q 000753 728 TSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVI 807 (1302)
Q Consensus 728 ~al~~nef~~~~~~~~~~~~~~~~~~~G~~~l~~~g~~~~~~~~w~~~g~l~~~~~lf~~l~~~~l~~~~~~~~~~~~~~ 807 (1302)
+.. . .. . .+.
T Consensus 335 -----------~~~--~-~~---~-----------~~~------------------------------------------ 344 (607)
T 3bk7_A 335 -----------RFR--P-YE---I-----------RFT------------------------------------------ 344 (607)
T ss_dssp -----------ECC--S-SC---C-----------CCC------------------------------------------
T ss_pred -----------HCC--C-CC---C-----------CCC------------------------------------------
T ss_conf -----------301--2-12---3-----------456------------------------------------------
Q ss_pred ECCCHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEECCCCCCCCCCCCCCCEEECCCC
Q ss_conf 01002321047300001222114544445543445776444557817898333013533522123554556505510120
Q 000753 808 EEDGEKQRASGHEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVS 887 (1302)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs 887 (1302)
... ... . ......++++|++..+ +. ..|++++
T Consensus 345 ------------------~~~---------~~~-~------~~~~~~l~~~~l~~~~-------------~~-~~l~~~~ 376 (607)
T 3bk7_A 345 ------------------KLS---------ERV-D------VERETLVEYPRLVKDY-------------GS-FKLEVEP 376 (607)
T ss_dssp ------------------CST---------TSC-C------CCCCEEEEECCEEEEC-------------SS-CEEEECC
T ss_pred ------------------CCC---------CCC-C------CCCCEEEEEECEEEEE-------------CC-EEEEECC
T ss_conf ------------------577---------754-4------4675289991309874-------------43-4899351
Q ss_pred EEECCCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 00018809999557999568799615289778625889999690389342301167961379889999989999988873
Q 000753 888 GVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWL 967 (1302)
Q Consensus 888 ~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~l 967 (1302)
+.+++|+++||+||||||||||+++|+|.... .+|.|.+ .+.+||++|+....+.+||.|++......
T Consensus 377 ~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~ 444 (607)
T 3bk7_A 377 GEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKVEW----------DLTVAYKPQYIKAEYEGTVYELLSKIDSS 444 (607)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBSCCCC----------CCCEEEECSSCCCCCSSBHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCEEEEE----------EEEEEEEECCCCCCCCCCHHHHHHHHHCC
T ss_conf 53279989999999998999999999669888--8628999----------02799980576677898499999753125
Q ss_pred HCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 07999758999999999999839966433324699988889999999999999963999831027999999999999999
Q 000753 968 RLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1047 (1302)
Q Consensus 968 r~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrkrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~ 1047 (1302)
.. ...+.++++++.+++.+..+..++ .||||||||++||++|+.+|++|+|||||+|||+.++..+++
T Consensus 445 ~~-------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~ 512 (607)
T 3bk7_A 445 KL-------NSNFYKTELLKPLGIIDLYDRNVE-----DLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSR 512 (607)
T ss_dssp HH-------HCHHHHHHTHHHHTCTTTTTSBGG-----GCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHH
T ss_pred CC-------CHHHHHHHHHHHCCCCHHHCCCHH-----HCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH
T ss_conf 87-------789999999987699337549922-----379999999999999974899899968744789999999999
Q ss_pred HHHHHH-HCCCEEEEEECCCCHHHHHHCCEEEEEEC-CCEEEEECCCCCC
Q ss_conf 999987-29987999926852999985081989936-9599991689863
Q 000753 1048 TVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKR-GGRVIYAGPLGHE 1095 (1302)
Q Consensus 1048 ~l~~~~-~~g~tvi~t~Hqp~~~~~~~~D~~l~l~~-gG~~~~~G~~~~~ 1095 (1302)
.|++++ +.|.|||+++|++. .+...+|++++|.. .|++...|++.+.
T Consensus 513 ~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p~~~ 561 (607)
T 3bk7_A 513 AIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPPMGM 561 (607)
T ss_dssp HHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred HHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEECCCCCEEEECCCHHHH
T ss_conf 999999747989999909899-9998699999995983069742898999
No 4
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=1.00 E-value=1 Score=454.32 Aligned_cols=437 Identities=23% Similarity=0.273 Sum_probs=308.4
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEE---------EECCCCCCCC-----CCCCEEEEE
Q ss_conf 57430177883782999984899987999999952839999764169---------9899316887-----766349997
Q 000753 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKI---------TYCGHELNEF-----VPQRTCAYI 250 (1302)
Q Consensus 185 ~IL~~VSg~ikpG~ltaIlGpsGSGKSTLL~~LaG~l~~~~~~sG~I---------~~nG~~~~~~-----~~~~~~aYV 250 (1302)
.+|+|+| .+++|+.++|+|||||||||||++|+|.+.++ +|++ .++|.+.... ..+..++|+
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~---~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 111 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN---LCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVK 111 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEE
T ss_pred CCCCCCC-CCCCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 0026768-67999999999999997999999996799888---8866753145677618840777787888874446653
Q ss_pred CCCCCCCCC---CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC
Q ss_conf 168988999---99999998611202777125677996699885199999128999999984000034579999998199
Q 000753 251 SQHDLHHGE---MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGL 327 (1302)
Q Consensus 251 ~Q~D~h~~~---lTVrEtL~Faa~~~~~~~~~~~~~~ls~~ek~~~i~~~~~~d~~~~a~~~~~~~~~~~~d~vl~~lGL 327 (1302)
.|.....+. .||+|++..... ...++.+++.+||
T Consensus 112 ~q~~~~~~~~~~~~v~e~~~~~~~-------------------------------------------~~~~~~~l~~lgl 148 (538)
T 1yqt_A 112 PQYVDLIPKAVKGKVIELLKKADE-------------------------------------------TGKLEEVVKALEL 148 (538)
T ss_dssp CSCGGGSGGGCCSBHHHHHHHHCS-------------------------------------------SSCHHHHHHHTTC
T ss_pred HHHHHHCCHHHHCCHHHHHHHHHH-------------------------------------------HHHHHHHHHHCCC
T ss_conf 223432101211219999743139-------------------------------------------9999999987699
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHH
Q ss_conf 63235433575678789578799999999944997879857987999999999999999998808965999980491159
Q 000753 328 DICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPET 407 (1302)
Q Consensus 328 ~~~~dT~VG~~~~rGLSGGQKkRvsia~aLv~~~~vllLDEpTSGLDs~ta~~Iv~~Lr~la~~~~~Tviisl~Qps~ei 407 (1302)
++..|..+++ |||||||||+||++|+.+|++|+|||||++||..+..++.+.|+++.+ .+.|+|++.|. ..++
T Consensus 149 ~~~~~~~~~~-----LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvi~vsHd-~~~~ 221 (538)
T 1yqt_A 149 ENVLEREIQH-----LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKSVLVVEHD-LAVL 221 (538)
T ss_dssp TTTTTSBGGG-----CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSC-HHHH
T ss_pred CHHHHCCHHH-----CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECC-HHHH
T ss_conf 7366098354-----899999999999998469999999897345798899999999999996-59879999478-8999
Q ss_pred HHHCCEEEEECCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHC
Q ss_conf 86349399954991899729567999998639878999996779975227200124464049998779965899999717
Q 000753 408 YDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSF 487 (1302)
Q Consensus 408 ~~lfD~IilLs~G~ivy~Gp~~~~~~~F~~lGf~cp~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~~~~~f~~~~~~s 487 (1302)
..++|+|++|.+|...|. .. ..+
T Consensus 222 ~~~~dri~vl~~~~~~~~-~~----------------------------------------~~~---------------- 244 (538)
T 1yqt_A 222 DYLSDIIHVVYGEPGVYG-IF----------------------------------------SQP---------------- 244 (538)
T ss_dssp HHHCSEEEEEEEETTTEE-EE----------------------------------------CCC----------------
T ss_pred HHHCCEEEEECCCCCCCC-CC----------------------------------------CCH----------------
T ss_conf 976889999868632440-22----------------------------------------553----------------
Q ss_pred HHCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 00076885303977766679876555665660899999999999999831838999999999999999988763455777
Q 000753 488 HMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSV 567 (1302)
Q Consensus 488 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~i~ali~gtvf~~~~~~~ 567 (1302)
+. . +.. +....
T Consensus 245 ----------------------------~~--~---------~~~------------------~~~~~------------ 255 (538)
T 1yqt_A 245 ----------------------------KG--T---------RNG------------------INEFL------------ 255 (538)
T ss_dssp ----------------------------EE--H---------HHH------------------HHHHH------------
T ss_pred ----------------------------HH--H---------HHH------------------HHHHH------------
T ss_conf ----------------------------55--8---------999------------------99876------------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCC
Q ss_conf 78788401678999999999997899999986112466661115654236689989998612898989999878866048
Q 000753 568 GDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIG 647 (1302)
Q Consensus 568 ~~~~~~~~~~g~lff~ll~~~~~~~~~~~~~~~~~pvf~kqr~~~~y~~~a~~la~~i~~iP~~~~~~~i~~~i~Y~~~g 647 (1302)
T Consensus 256 -------------------------------------------------------------------------------- 255 (538)
T 1yqt_A 256 -------------------------------------------------------------------------------- 255 (538)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHHHHHH
Q ss_conf 86128799999999999999799999999983041578888999999999987640224798045789999782999999
Q 000753 648 YDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQ 727 (1302)
Q Consensus 648 ~~~~~~~ff~~~l~~~~~~~~~~~lf~~iaa~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isP~~Y~~ 727 (1302)
.|+.... ..
T Consensus 256 -----------------------------------------------------~~~~~~~-~~----------------- 264 (538)
T 1yqt_A 256 -----------------------------------------------------RGYLKDE-NV----------------- 264 (538)
T ss_dssp -----------------------------------------------------HTEETTT-TE-----------------
T ss_pred -----------------------------------------------------HHCCCHH-HH-----------------
T ss_conf -----------------------------------------------------4023002-32-----------------
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE
Q ss_conf 99999875088444578998886663368888652965467216678999999999999999999983387899985221
Q 000753 728 TSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVI 807 (1302)
Q Consensus 728 ~al~~nef~~~~~~~~~~~~~~~~~~~G~~~l~~~g~~~~~~~~w~~~g~l~~~~~lf~~l~~~~l~~~~~~~~~~~~~~ 807 (1302)
... ... . .+ .
T Consensus 265 -----------~~~--~~~----~-----------~~--------------------------------~---------- 274 (538)
T 1yqt_A 265 -----------RFR--PYE----I-----------KF--------------------------------T---------- 274 (538)
T ss_dssp -----------ECS--SSC----C-----------CC--------------------------------C----------
T ss_pred -----------CCC--CCC----C-----------CC--------------------------------C----------
T ss_conf -----------034--445----5-----------54--------------------------------5----------
Q ss_pred ECCCHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEECCCCCCCCCCCCCCCEEECCCC
Q ss_conf 01002321047300001222114544445543445776444557817898333013533522123554556505510120
Q 000753 808 EEDGEKQRASGHEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVS 887 (1302)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs 887 (1302)
.. . .. .. +.....+.++|+++.++ . ..|++++
T Consensus 275 --------------------~~-----~--~~--~~-----~~~~~~l~~~~l~~~~~-------------~-~~l~~~~ 306 (538)
T 1yqt_A 275 --------------------KT-----G--ER--VE-----IERETLVTYPRLVKDYG-------------S-FRLEVEP 306 (538)
T ss_dssp --------------------CS-----S--GG--GS-----SCCCEEEEECCEEEEET-------------T-EEEEECC
T ss_pred --------------------CC-----C--CC--CC-----CCCCEEEEEEEEEEEEC-------------C-EEEEECC
T ss_conf --------------------57-----7--65--56-----67871899930799989-------------9-8999074
Q ss_pred EEECCCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 00018809999557999568799615289778625889999690389342301167961379889999989999988873
Q 000753 888 GVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWL 967 (1302)
Q Consensus 888 ~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~l 967 (1302)
+.+++|+++||+|+||||||||+++|+|.... .+|.|.+ ...+||++|+....+.+||.|++......
T Consensus 307 ~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~ 374 (538)
T 1yqt_A 307 GEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKIEW----------DLTVAYKPQYIKADYEGTVYELLSKIDAS 374 (538)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBCCCCC----------CCCEEEECSSCCCCCSSBHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCEEEEE----------CCEEEEEECCCCCCCCCCHHHHHHHHHCC
T ss_conf 41289989999889999999999999679989--9718998----------74699982677678888599999864036
Q ss_pred HCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 07999758999999999999839966433324699988889999999999999963999831027999999999999999
Q 000753 968 RLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1047 (1302)
Q Consensus 968 r~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrkrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~ 1047 (1302)
.. . ..+.++++++.+++.+..+..+ ..||||||||++||++|+.+|++|+|||||+|||..++..+++
T Consensus 375 ~~----~---~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~ 442 (538)
T 1yqt_A 375 KL----N---SNFYKTELLKPLGIIDLYDREV-----NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSR 442 (538)
T ss_dssp HH----T---CHHHHHHTTTTTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHH
T ss_pred CC----C---HHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH
T ss_conf 88----7---8999999999749915653994-----4489999999999999972899899939801089999999999
Q ss_pred HHHHHH-HCCCEEEEEECCCCHHHHHHCCEEEEEEC-CCEEEEECCCCCC
Q ss_conf 999987-29987999926852999985081989936-9599991689863
Q 000753 1048 TVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKR-GGRVIYAGPLGHE 1095 (1302)
Q Consensus 1048 ~l~~~~-~~g~tvi~t~Hqp~~~~~~~~D~~l~l~~-gG~~~~~G~~~~~ 1095 (1302)
.+++++ +.|.|||+++|++. ++...+|++++|.. .|+++..|++.+.
T Consensus 443 ~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~~~~ 491 (538)
T 1yqt_A 443 AIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPPMGM 491 (538)
T ss_dssp HHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred HHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEEEECCCHHHH
T ss_conf 999999867989999939899-9999689999990883157404898999
No 5
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=1.00 E-value=1 Score=454.07 Aligned_cols=215 Identities=23% Similarity=0.264 Sum_probs=155.1
Q ss_pred CCEEEECEEEEEECCEEEEEECCCCCCHHHHH---------------------HHHHCCCCCCC----CCCCEEEECCCC
Q ss_conf 52574301778837829999848999879999---------------------99952839999----764169989931
Q 000753 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLM---------------------LALAGKLGKDL----RASGKITYCGHE 237 (1302)
Q Consensus 183 ~~~IL~~VSg~ikpG~ltaIlGpsGSGKSTLL---------------------~~LaG~l~~~~----~~sG~I~~nG~~ 237 (1302)
..++|+|||+.+++|++++|+||||||||||| +.+.|...++. ...|.|.++|..
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CCCCEECCEEEECCCCEEEEECCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEECCCCCEEECCCH
T ss_conf 76402343899879989999899999988871510123211100011002445553034567756321356415744720
Q ss_pred CCCCCCCCEEEEECCCCC-------------------CCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 688776634999716898-------------------8999999999986112027771256779966998851999991
Q 000753 238 LNEFVPQRTCAYISQHDL-------------------HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298 (1302)
Q Consensus 238 ~~~~~~~~~~aYV~Q~D~-------------------h~~~lTVrEtL~Faa~~~~~~~~~~~~~~ls~~ek~~~i~~~~ 298 (1302)
.... +++.++||.|... .++.+||+|++.|........ .+... ...
T Consensus 110 ~~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~-----------~~~~~---~~~ 174 (670)
T 3ux8_A 110 TSRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTE-----------KEAQI---ARL 174 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC------------------------------------
T ss_pred HHCC-CHHCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCH-----------HHHHH---HHH
T ss_conf 1025-50000465112566777775311112344433345785999999752036431-----------45677---888
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECCCCCCCH
Q ss_conf 28999999984000034579999998199632-35433575678789578799999999944997--8798579879999
Q 000753 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN--VLYMDEISTGLDS 375 (1302)
Q Consensus 299 ~~d~~~~a~~~~~~~~~~~~d~vl~~lGL~~~-~dT~VG~~~~rGLSGGQKkRvsia~aLv~~~~--vllLDEpTSGLDs 375 (1302)
..+ +.... -.+++.+||++. .|..++. |||||||||.||++|+.+|+ +++|||||+|||+
T Consensus 175 ~~~-----------~~~~~-~~~l~~~gL~~~~~~~~~~~-----LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~ 237 (670)
T 3ux8_A 175 ILR-----------EIRDR-LGFLQNVGLDYLTLSRSAGT-----LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQ 237 (670)
T ss_dssp ---------------CHHH-HHHHHHTTCTTCCTTCBGGG-----SCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCG
T ss_pred HHH-----------HHHHH-HHHHHHCCCCHHHHCCCCCC-----CCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCH
T ss_conf 899-----------99999-98999759843441497001-----89999999999999962899878999798568999
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEE------CCCEEEEECCHHHHH
Q ss_conf 999999999999988089659999804911598634939995------499189972956799
Q 000753 376 STTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL------SEGQIVYQGPRDNVL 432 (1302)
Q Consensus 376 ~ta~~Iv~~Lr~la~~~~~Tviisl~Qps~ei~~lfD~IilL------s~G~ivy~Gp~~~~~ 432 (1302)
.+..++.+.|+++.. .+.|+|++.|.. +....+|+|++| .+|++++.|+.+++.
T Consensus 238 ~~~~~l~~~l~~l~~-~g~tvi~vtHd~--~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 238 RDNDRLIATLKSMRD-LGNTLIVVEHDE--DTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp GGHHHHHHHHHHHHH-TTCEEEEECCCH--HHHHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHH-CCCEEEEEECCH--HHHHHCCEEEEECCCCCCCCCEEEEECCHHHHH
T ss_conf 999999999999997-499899995787--999629989994466656698899740899986
No 6
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=1.00 E-value=1 Score=452.42 Aligned_cols=427 Identities=21% Similarity=0.302 Sum_probs=301.1
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEECCC-CCCCCCCCH
Q ss_conf 2574301778837829999848999879999999528399997641699899316887766349997168-988999999
Q 000753 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQH-DLHHGEMTV 262 (1302)
Q Consensus 184 ~~IL~~VSg~ikpG~ltaIlGpsGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~aYV~Q~-D~h~~~lTV 262 (1302)
+.+|+|+|+.+++|++++|+|||||||||||++|+| |+| +|.+... ....+|++|+ +..++.+||
T Consensus 448 ~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~---~~~~~~v~q~~~~~~~~ltv 513 (986)
T 2iw3_A 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE---ECRTVYVEHDIDGTHSDTSV 513 (986)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT---TSCEEETTCCCCCCCTTSBH
T ss_pred EEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHC---------CCC--CCCCCCC---CEEEEEECCCCCCCCCCCCH
T ss_conf 876741269981897899999999879999999948---------986--7976635---41699973564324557809
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC-CCCCCCCCCCCCC
Q ss_conf 999986112027771256779966998851999991289999999840000345799999981996-3235433575678
Q 000753 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVGDEMRR 341 (1302)
Q Consensus 263 rEtL~Faa~~~~~~~~~~~~~~ls~~ek~~~i~~~~~~d~~~~a~~~~~~~~~~~~d~vl~~lGL~-~~~dT~VG~~~~r 341 (1302)
.|++.+ ...+ . + ..++.+++.+||+ +..+..+++
T Consensus 514 ~e~l~~--~~~~--~----------~---------------------------~~v~~~L~~lgL~~~~~~~~~~~---- 548 (986)
T 2iw3_A 514 LDFVFE--SGVG--T----------K---------------------------EAIKDKLIEFGFTDEMIAMPISA---- 548 (986)
T ss_dssp HHHHHT--TCSS--C----------H---------------------------HHHHHHHHHTTCCHHHHHSBGGG----
T ss_pred HHHHHH--HHCC--H----------H---------------------------HHHHHHHHHCCCCHHHHCCCCCC----
T ss_conf 999998--6127--9----------9---------------------------99999999869984464398020----
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECCCE
Q ss_conf 78957879999999994499787985798799999999999999999880896599998049115986349399954991
Q 000753 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1302)
Q Consensus 342 GLSGGQKkRvsia~aLv~~~~vllLDEpTSGLDs~ta~~Iv~~Lr~la~~~~~Tviisl~Qps~ei~~lfD~IilLs~G~ 421 (1302)
|||||||||+||++|+.+|++++|||||+|||..+...+.+.|++ .+.|+|++.|. ..++..++|+|++|.+|+
T Consensus 549 -LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~tvIivSHd-l~~l~~~adrii~L~~G~ 622 (986)
T 2iw3_A 549 -LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGITSITISHD-SVFLDNVCEYIINYEGLK 622 (986)
T ss_dssp -CCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCSEEEEECSC-HHHHHHHCSEEEEEETTE
T ss_pred -CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHH----CCCEEEEEECC-HHHHHHHCCEEEEEECCE
T ss_conf -799999999999999649999999797667999999999999986----79989999798-899998689999997994
Q ss_pred EE-EECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCHHCHHHHHHHCCC
Q ss_conf 89-97295679999986398789999967799752272001244640499987799658999997170007688530397
Q 000753 422 IV-YQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVP 500 (1302)
Q Consensus 422 iv-y~Gp~~~~~~~F~~lGf~cp~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~~~~~f~~~~~~s~~~~~~~~~l~~~ 500 (1302)
++ |.|+.+++... .|. ...
T Consensus 623 iv~~~G~~~e~~~~-------~~~----------------~~~------------------------------------- 642 (986)
T 2iw3_A 623 LRKYKGNFTEFVKK-------CPA----------------AKA------------------------------------- 642 (986)
T ss_dssp EEEEESCHHHHHHH-------CGG----------------GGG-------------------------------------
T ss_pred EECCCCCHHHHHHH-------HHH----------------HHH-------------------------------------
T ss_conf 42677999999861-------488----------------999-------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf 77666798765556656608999999999999998318389999999999999999887634557777878840167899
Q 000753 501 YDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGAL 580 (1302)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~i~ali~gtvf~~~~~~~~~~~~~~~~~g~l 580 (1302)
+ +... ....
T Consensus 643 ---------------~--------------------------------------------~~l~--~~~~---------- 651 (986)
T 2iw3_A 643 ---------------Y--------------------------------------------EELS--NTDL---------- 651 (986)
T ss_dssp ---------------S--------------------------------------------SSTT--TCCC----------
T ss_pred ---------------H--------------------------------------------HHHH--HHHH----------
T ss_conf ---------------9--------------------------------------------8644--5443----------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 99999999978999999861124666611156542366899899986128989899998788660488612879999999
Q 000753 581 FFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFL 660 (1302)
Q Consensus 581 ff~ll~~~~~~~~~~~~~~~~~pvf~kqr~~~~y~~~a~~la~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~l 660 (1302)
T Consensus 652 -------------------------------------------------------------------------------- 651 (986)
T 2iw3_A 652 -------------------------------------------------------------------------------- 651 (986)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999997999999999830415788889999999999876402247980457899997829999999999987508844
Q 000753 661 AFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRW 740 (1302)
Q Consensus 661 ~~~~~~~~~~~lf~~iaa~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isP~~Y~~~al~~nef~~~~~ 740 (1302)
.+
T Consensus 652 ------------------------------------------------------------------------------~~ 653 (986)
T 2iw3_A 652 ------------------------------------------------------------------------------EF 653 (986)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred ------------------------------------------------------------------------------HC
T ss_conf ------------------------------------------------------------------------------20
Q ss_pred CCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCHHHHCCCCC
Q ss_conf 45789988866633688886529654672166789999999999999999999833878999852210100232104730
Q 000753 741 DAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQRASGHE 820 (1302)
Q Consensus 741 ~~~~~~~~~~~~~~G~~~l~~~g~~~~~~~~w~~~g~l~~~~~lf~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 820 (1302)
. .+.+ +.
T Consensus 654 ~--~p~~---------------~~-------------------------------------------------------- 660 (986)
T 2iw3_A 654 K--FPEP---------------GY-------------------------------------------------------- 660 (986)
T ss_dssp C--CCCC---------------CC--------------------------------------------------------
T ss_pred C--CCCC---------------CC--------------------------------------------------------
T ss_conf 3--5655---------------54--------------------------------------------------------
Q ss_pred CCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEECCCCCCCCCCCCCCCEEECCCCEEECCCEEEEEEC
Q ss_conf 00012221145444455434457764445578178983330135335221235545565055101200001880999955
Q 000753 821 AEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMG 900 (1302)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G 900 (1302)
... . . +.....+.++|+++.++. ..+.+|+|+|+.+++|+++||+|
T Consensus 661 -------------~~~-~---~------~~~~~mL~v~nLs~~Y~g-----------~~~~iL~dVSl~I~~GeivaIiG 706 (986)
T 2iw3_A 661 -------------LEG-V---K------TKQKAIVKVTNMEFQYPG-----------TSKPQITDINFQCSLSSRIAVIG 706 (986)
T ss_dssp -------------CTT-C---C------STTSEEEEEEEEEECCTT-----------CSSCSEEEEEEEEETTCEEEECS
T ss_pred -------------CCC-C---C------CCCCCEEEEEEEEEEECC-----------CCCEEEECCEEEECCCCEEEEEC
T ss_conf -------------334-5---6------678706999846998189-----------87413432279982897899989
Q ss_pred CCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHCCEEEEECCCCCC----CCCCCHHHHHHHHHHHH--------
Q ss_conf 799956879961528977862588999969038934230116796137988----99999899999888730--------
Q 000753 901 VSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIH----SPYVTVYESLLYSAWLR-------- 968 (1302)
Q Consensus 901 ~sGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~----~~~lTv~E~l~f~a~lr-------- 968 (1302)
+||||||||+++|+|... +.+|+|.++|. ..+||++|+..+ ....|++|++.+.-...
T Consensus 707 pNGSGKSTLLklLaGll~--P~sG~I~~~~~--------~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~ 776 (986)
T 2iw3_A 707 PNGAGKSTLINVLTGELL--PTSGEVYTHEN--------CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDR 776 (986)
T ss_dssp CCCHHHHHHHHHHTTSSC--CSEEEEEECTT--------CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTT
T ss_pred CCCCCHHHHHHHHHCCCC--CCCEEEEECCC--------CCEEEECCCHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHH
T ss_conf 999879999999957988--88608998686--------42576313024332100114799998877504502555543
Q ss_pred ----CC----------------------------------------------------CC--------CC----------
Q ss_conf ----79----------------------------------------------------99--------75----------
Q 000753 969 ----LS----------------------------------------------------SD--------VD---------- 974 (1302)
Q Consensus 969 ----~~----------------------------------------------------~~--------~~---------- 974 (1302)
.. .. .+
T Consensus 777 ~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~ 856 (986)
T 2iw3_A 777 ANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSK 856 (986)
T ss_dssp TSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHH
T ss_pred HHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 32103435554420001123201234444555431222002100025543200000123432344321016777666766
Q ss_pred ----------------HHHHHHHHHHHHHHCCCCC-C-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf ----------------8999999999999839966-4-333246999888899999999999999639998310279999
Q 000753 975 ----------------TKKRKMFVDEVMELVELKS-L-NDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1036 (1302)
Q Consensus 975 ----------------~~~~~~~v~~~l~~l~L~~-~-~~~~vg~~~~~~LSgGqrkrl~ia~~L~~~p~il~LDEPTsg 1036 (1302)
.......++++++.++|.+ . .+..+ ..||||||||+.||++|+.+|+||+|||||+|
T Consensus 857 ~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~-----~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~g 931 (986)
T 2iw3_A 857 MVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRI-----RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNY 931 (986)
T ss_dssp HHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCG-----GGCCHHHHHHHHHHHHHTTCCSEEEEECGGGT
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHCCCCC-----CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 5544324555430223234799999999976998054448980-----42399999999999999839999999798657
Q ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECC
Q ss_conf 9999999999999998729987999926852999985081989936959999168
Q 000753 1037 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091 (1302)
Q Consensus 1037 LD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~~D~~l~l~~gG~~~~~G~ 1091 (1302)
||..+...+++.+++. +.|||+++|++. .+...+|++++|.+ |+++..|+
T Consensus 932 LD~~s~~~L~~~L~~~---g~tVIiISHD~e-~v~~l~DrVivL~~-G~Iv~~G~ 981 (986)
T 2iw3_A 932 LDRDSLGALSKALKEF---EGGVIIITHSAE-FTKNLTEEVWAVKD-GRMTPSGH 981 (986)
T ss_dssp CCHHHHHHHHHHHHSC---SSEEEEECSCHH-HHTTTCCEEECCBT-TBCCC---
T ss_pred CCHHHHHHHHHHHHHH---CCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEECC
T ss_conf 7999999999999974---997999979899-99985899999989-99998687
No 7
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=444.35 Aligned_cols=203 Identities=22% Similarity=0.244 Sum_probs=160.0
Q ss_pred EEECCCCEEECCCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHCCEEEEECCCCCCCCCCCHHHH
Q ss_conf 55101200001880999955799956879961528977862588999969038934230116796137988999998999
Q 000753 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYES 960 (1302)
Q Consensus 881 ~iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~ 960 (1302)
..|+.+++.+++|+++||+|+||||||||+++|+|... +.+|+|.+++ +.++|++|+.......||+|+
T Consensus 282 ~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~~---------~~i~~~~q~~~~~~~~tv~~~ 350 (538)
T 3ozx_A 282 FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEK---------QILSYKPQRIFPNYDGTVQQY 350 (538)
T ss_dssp EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSBCCEESSC---------CCEEEECSSCCCCCSSBHHHH
T ss_pred EEEEECCCEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECC---------EEEEEECHHCCCCCCCCHHHH
T ss_conf 89982664688998999999999989999999957888--9981899998---------456761400034547779999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
Q ss_conf 99888730799975899999999999983996643332469998888999999999999996399983102799999999
Q 000753 961 LLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040 (1302)
Q Consensus 961 l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrkrl~ia~~L~~~p~il~LDEPTsgLD~~ 1040 (1302)
+.+... ..... ....++++++.+++.+..+..++ .||||||||++||++|+.+|++|+|||||+|||+.
T Consensus 351 l~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~ 419 (538)
T 3ozx_A 351 LENASK--DALST----SSWFFEEVTKRLNLHRLLESNVN-----DLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVE 419 (538)
T ss_dssp HHHHCS--STTCT----TSHHHHHTTTTTTGGGCTTSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHH
T ss_pred HHHHHH--HCCCH----HHHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH
T ss_conf 987553--11211----69999999987599778628932-----27999999999999997089989996986579999
Q ss_pred HHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHCCEEEEEECC-CEEEEECCCCCCHHHHHHHHHHC
Q ss_conf 99999999999872-99879999268529999850819899369-59999168986314689999838
Q 000753 1041 AAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRG-GRVIYAGPLGHESHKLIEYFEAV 1106 (1302)
Q Consensus 1041 ~~~~i~~~l~~~~~-~g~tvi~t~Hqp~~~~~~~~D~~l~l~~g-G~~~~~G~~~~~~~~~~~yf~~~ 1106 (1302)
++..+++.|+++++ .|.|||+++|++. ++...+|++++|..+ |.....+++.........++...
T Consensus 420 ~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (538)
T 3ozx_A 420 ERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATSPVTLKTGMNEFLREL 486 (538)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEECCCCCHHHHHHHHHHHHHHC
T ss_conf 9999999999999738989999958899-999968999999698510116798477887888887416
No 8
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=430.25 Aligned_cols=201 Identities=19% Similarity=0.198 Sum_probs=155.7
Q ss_pred EEECCCCEEECCC-----EEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHCCEEEEECCCCCCCCCC
Q ss_conf 5510120000188-----09999557999568799615289778625889999690389342301167961379889999
Q 000753 881 QLLHSVSGVFRPG-----VLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYV 955 (1302)
Q Consensus 881 ~iL~~vs~~i~~G-----~~~ai~G~sGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~l 955 (1302)
..++++++.+.+| |++||+|+||||||||+++|+|.... .+|.. .. ...++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p--~~G~~------~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP--DEGQD------IP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCC--SBCCC------CC----SCCEEEECSSCCCCCCS
T ss_pred CCCCCEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCC--CCCCC------CC----CCCEEEECCCCCCCCCC
T ss_conf 44686589970685146518999888898699999999657878--78858------66----77379860544445786
Q ss_pred CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 98999998887307999758999999999999839966433324699988889999999999999963999831027999
Q 000753 956 TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1035 (1302)
Q Consensus 956 Tv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrkrl~ia~~L~~~p~il~LDEPTs 1035 (1302)
||+|++... ++. ... ....++++++.++|.+..+..+ ..||||||||++||++|+.+|++|+|||||+
T Consensus 429 tv~e~~~~~--~~~--~~~---~~~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKK--IRG--QFL---NPQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHH--CSS--TTT---SHHHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred CHHHHHHHH--HHC--CCC---CHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 699999877--530--324---6899999998749834651993-----2389999999999999973899999989888
Q ss_pred CCCHHHHHHHHHHHHHHH-HCCCEEEEEECCCCHHHHHHCCEEEEEEC-CCEEEEECCCCCCHHHHHHHHHHC
Q ss_conf 999999999999999987-29987999926852999985081989936-959999168986314689999838
Q 000753 1036 GLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKR-GGRVIYAGPLGHESHKLIEYFEAV 1106 (1302)
Q Consensus 1036 gLD~~~~~~i~~~l~~~~-~~g~tvi~t~Hqp~~~~~~~~D~~l~l~~-gG~~~~~G~~~~~~~~~~~yf~~~ 1106 (1302)
|||+.++..+++.++++. +.|.|||+++|+.. ++...+|++++|.. .|+++..|++.+.......++..+
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~~~~~~~~ 568 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNL 568 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEEEECCCHHHHHHHHHHHHHHC
T ss_conf 899999999999999999757998999968899-999868999999589873774298699863046899754
No 9
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=348.13 Aligned_cols=198 Identities=28% Similarity=0.412 Sum_probs=144.6
Q ss_pred EEECCCCEEECCCEEEEEECCCCCCHHHHH---------HHHCCCCC-CC---EEE------EEEEECCCCCCHH-----
Q ss_conf 551012000018809999557999568799---------61528977-86---258------8999969038934-----
Q 000753 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLM---------DVLAGRKT-GG---YIE------GDIKISGYPKNQE----- 936 (1302)
Q Consensus 881 ~iL~~vs~~i~~G~~~ai~G~sGaGKTTLl---------~~L~g~~~-~g---~~~------G~i~i~g~~~~~~----- 936 (1302)
..|+|||+.+++|++++|+|+||||||||+ +.+.+... .| .+. +.+.++..+....
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred CCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC
T ss_conf 43365312871895999992588881545777777899987403445666533335510114257631565566555564
Q ss_pred -H--------------------------------------HCCEEEEECCCCCCCC------------------------
Q ss_conf -2--------------------------------------3011679613798899------------------------
Q 000753 937 -T--------------------------------------FARVSGYCEQNDIHSP------------------------ 953 (1302)
Q Consensus 937 -~--------------------------------------~~~~~gyv~Q~d~~~~------------------------ 953 (1302)
. .....||+.++..+.|
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred CCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCCHHHHHHHHC
T ss_conf 30223678899986126687750455543111146664432367634877410167615632201464356665543015
Q ss_pred --------CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf --------999899999888730799975899999999999983996643332469998888999999999999996399
Q 000753 954 --------YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANP 1025 (1302)
Q Consensus 954 --------~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrkrl~ia~~L~~~p 1025 (1302)
.+||.|++.|... .+ ....+.++|+.++|.... .+.+ ...||||||||+.||++|+.+|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~------~~---~~~~~~~~L~~vGL~~~~---lgq~-~~~LSGGErQRV~LAraL~~~p 824 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKN------IP---SIKRTLQVLHDVGLGYVK---LGQP-ATTLSGGEAQRIKLASELRKRD 824 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTT------CH---HHHHHHHHHHHTTGGGSB---TTCC-STTCCHHHHHHHHHHHHHTSCC
T ss_pred CCCHHHHHHCCHHHHHHHHHC------CH---HHHHHHHHHHHCCCCHHH---CCCC-CCCCCHHHHHHHHHHHHHHHCC
T ss_conf 677787740779999998751------50---589999999981886333---1687-1579999999999999996287
Q ss_pred ---CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEE-----CCCEEEEECCCC
Q ss_conf ---98310279999999999999999999872998799992685299998508198993-----695999916898
Q 000753 1026 ---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK-----RGGRVIYAGPLG 1093 (1302)
Q Consensus 1026 ---~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~~D~~l~l~-----~gG~~~~~G~~~ 1093 (1302)
+||+|||||+|||+.+...+++.|+++++.|.|||+++|++ +....+|+++.|. ++|++++.|++.
T Consensus 825 ~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL--~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpe 898 (916)
T 3pih_A 825 TGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNL--DVIKNADHIIDLGPEGGKEGGYIVATGTPE 898 (916)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH--HHHTTCSEEEEEESSSGGGCCEEEEEESHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCH--HHHHHCCEEEEECCCCCCCCCEEEEECCHH
T ss_conf 88978999798889999999999999999996699899993799--999729999996687777897899976999
No 10
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=1.00 E-value=1 Score=341.14 Aligned_cols=195 Identities=29% Similarity=0.378 Sum_probs=146.7
Q ss_pred EECCCCEEECCCEEEEEECCCCCCHHHHHHHHC-C----C-----CCCC---EEEE------EEEECCCCCCH------H
Q ss_conf 510120000188099995579995687996152-8----9-----7786---2588------99996903893------4
Q 000753 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLA-G----R-----KTGG---YIEG------DIKISGYPKNQ------E 936 (1302)
Q Consensus 882 iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~-g----~-----~~~g---~~~G------~i~i~g~~~~~------~ 936 (1302)
.|+|||+.+++|+++||+|+||||||||+++|. | . ...| .+.| .|.+++.+... .
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~pa 718 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA 718 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHH
T ss_pred CCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCH
T ss_conf 64662599868989999927999889999999999998762477778885014226434453899758444667555601
Q ss_pred -----------H-----HCCEEEEECCCCCCC----------------------C-------------------------
Q ss_conf -----------2-----301167961379889----------------------9-------------------------
Q 000753 937 -----------T-----FARVSGYCEQNDIHS----------------------P------------------------- 953 (1302)
Q Consensus 937 -----------~-----~~~~~gyv~Q~d~~~----------------------~------------------------- 953 (1302)
. ..+..||++|...+. +
T Consensus 719 ty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 798 (972)
T 2r6f_A 719 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG 798 (972)
T ss_dssp HHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHCCCCCCCCCCCCCCCCCCCHHHHHHCCC
T ss_conf 22137899999861188988725454324435555655212466503410111665310021124643340223331067
Q ss_pred -------CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf -------9998999998887307999758999999999999839966-43332469998888999999999999996399
Q 000753 954 -------YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS-LNDSMVGLPGVSGLSTEQRKRLTIAVELVANP 1025 (1302)
Q Consensus 954 -------~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqrkrl~ia~~L~~~p 1025 (1302)
.+|+.|++.|... ... ...+.++++.++|.. ..+..+ ..||||||||+.||++|+.+|
T Consensus 799 ~sI~dvl~ltv~e~l~~~~~------~~~---~~~~~~~L~~~gL~~~~l~~~~-----~~LSGGekQRv~LAraL~~~p 864 (972)
T 2r6f_A 799 KNIAEVLDMTVEDALDFFAS------IPK---IKRKLETLYDVGLGYMKLGQPA-----TTLSGGEAQRVKLAAELHRRS 864 (972)
T ss_dssp BCHHHHHTSBHHHHHHHTCS------CHH---HHHHHHHHHHTTCSSSBTTCCG-----GGCCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHHHHCCHHHHHHHHHC------CHH---HHHHHHHHHHCCCCCCCCCCCH-----HHCCHHHHHHHHHHHHHHCCC
T ss_conf 77787650679999998751------336---8999999998599821102704-----019999999999999995388
Q ss_pred ---CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEE-----CCCEEEEECCC
Q ss_conf ---98310279999999999999999999872998799992685299998508198993-----69599991689
Q 000753 1026 ---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK-----RGGRVIYAGPL 1092 (1302)
Q Consensus 1026 ---~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp~~~~~~~~D~~l~l~-----~gG~~~~~G~~ 1092 (1302)
+||+|||||+|||+.+...+++.|+++++.|.|||+++|++. ....+|++++|. ++|++++.|++
T Consensus 865 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--~i~~aDrIivL~p~gG~~~G~Iv~~g~~ 937 (972)
T 2r6f_A 865 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGPEGGDRGGQIVAVGTP 937 (972)
T ss_dssp CSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEECSSSTTSCCSEEEEESH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH--HHHHCCEEEEECCCCCCCCCEEEEECCH
T ss_conf 899889997987899999999999999999967998999868879--9984999999767777789889986599
Done!