BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000755
(1300 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 221 bits (563), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 108/216 (50%), Positives = 149/216 (68%), Gaps = 3/216 (1%)
Query: 615 TAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISG 674
+I + + F W S+ PTL I + G VAV G VG GKSSLLS +L E+ K+ G
Sbjct: 2 NSITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60
Query: 675 TLKLCGTKAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTV 734
+ + G+ AYV Q WIQ+ ++ +NILFG ++ Y V++AC+L DLEIL GD+T
Sbjct: 61 HVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTE 120
Query: 735 IGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL--LGLLRSK 792
IGE+G+NLSGGQKQR+ +ARA+Y +ADIYLFDDP SAVDAH G H+F+ V+ G+L++K
Sbjct: 121 IGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNK 180
Query: 793 TVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDIL 828
T I VTH + +LP D+I+VM GKI++ G Y ++L
Sbjct: 181 TRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELL 216
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 102/241 (42%), Gaps = 17/241 (7%)
Query: 1055 VDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIV 1114
+ + N +A P L G+T + P G +VG+ G GKS+L+ L ++ G +
Sbjct: 4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVA 63
Query: 1115 IDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEV 1174
I G ++ +PQ + ++R N+ + ++ + C L ++
Sbjct: 64 IKG-------------SVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDL 110
Query: 1175 RNKEGKLDSRVTENGENWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTATDNLIQQTL 1234
+ + E G N S GQ+Q V L R D+ ++VD I + +
Sbjct: 111 EILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENV 170
Query: 1235 ---RQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVAEY 1291
+ + T I + H ++ + D+++++S G I E S +LL + +FA+ + Y
Sbjct: 171 IGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLA-RDGAFAEFLRTY 229
Query: 1292 T 1292
Sbjct: 230 A 230
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 169 bits (429), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 88/222 (39%), Positives = 133/222 (59%), Gaps = 3/222 (1%)
Query: 615 TAIEIVDGNFA--WDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKI 672
T E+V N W+ P L+DIN K+ G +AV G+ G+GK+SLL I+GE+
Sbjct: 15 TTTEVVMENVTAFWE-EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS 73
Query: 673 SGTLKLCGTKAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQ 732
G +K G ++ +Q WI G I++NI+FG D +Y V++AC L++D+ + D
Sbjct: 74 EGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDN 133
Query: 733 TVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSK 792
V+GE GI LSGGQ+ RI +ARA+Y+DAD+YL D PF +D T +F+ + L+ +K
Sbjct: 134 IVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK 193
Query: 793 TVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDF 834
T I VT ++E L AD IL++ +G G ++++ N DF
Sbjct: 194 TRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDF 235
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 81/196 (41%), Gaps = 14/196 (7%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
VL+ + G + G TG+GK++L+ + +EP+ G+I G
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 81
Query: 1131 RLSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGE 1190
R+S Q + GT++ N+ Y + + CQL +++ K + + E G
Sbjct: 82 RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI 141
Query: 1191 NWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTATDNLI-QQTLRQHFSDCTVITIAHR 1249
S GQR + L R D +D T+ I + + + ++ T I + +
Sbjct: 142 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK 201
Query: 1250 ITSVIDSDMVLLLSHG 1265
+ + +D +L+L G
Sbjct: 202 MEHLKKADKILILHEG 217
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 169 bits (428), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 88/222 (39%), Positives = 133/222 (59%), Gaps = 3/222 (1%)
Query: 615 TAIEIVDGNFA--WDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKI 672
T E+V N W+ P L+DIN K+ G +AV G+ G+GK+SLL I+GE+
Sbjct: 3 TTTEVVMENVTAFWE-EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS 61
Query: 673 SGTLKLCGTKAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQ 732
G +K G ++ +Q WI G I++NI+FG D +Y V++AC L++D+ + D
Sbjct: 62 EGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDN 121
Query: 733 TVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSK 792
V+GE GI LSGGQ+ RI +ARA+Y+DAD+YL D PF +D T +F+ + L+ +K
Sbjct: 122 IVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK 181
Query: 793 TVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDF 834
T I VT ++E L AD IL++ +G G ++++ N DF
Sbjct: 182 TRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDF 223
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 88/216 (40%), Gaps = 14/216 (6%)
Query: 1051 THGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTA 1110
T EV + N+ + VL+ + G + G TG+GK++L+ + +EP+
Sbjct: 3 TTTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62
Query: 1111 GEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQL 1170
G+I G R+S Q + GT++ N+ Y + + CQL
Sbjct: 63 GKIKHSG-------------RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQL 109
Query: 1171 GDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTATDNLI 1230
+++ K + + E G S GQR + L R D +D T+ I
Sbjct: 110 EEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEI 169
Query: 1231 -QQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHG 1265
+ + + ++ T I + ++ + +D +L+L G
Sbjct: 170 FESCVCKLMANKTRILVTSKMEHLKKADKILILHEG 205
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 167 bits (424), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 83/203 (40%), Positives = 127/203 (62%)
Query: 632 NPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWI 691
NP L++INL + G +A+ G+ GSGK+SLL ILGE+ G +K G ++ +Q WI
Sbjct: 51 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWI 110
Query: 692 QSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQ 751
G I++NI+FG D +Y V++AC L++D+ + D TV+GE G+ LSGGQ+ RI
Sbjct: 111 MPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARIS 170
Query: 752 IARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLIL 811
+ARA+Y+DAD+YL D PF +D T +F+ + L+ +KT I VT ++E L AD IL
Sbjct: 171 LARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKIL 230
Query: 812 VMKDGKITQAGKYNDILNSGTDF 834
++ G G ++++ + DF
Sbjct: 231 ILHQGSSYFYGTFSELQSLRPDF 253
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 79/196 (40%), Gaps = 14/196 (7%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
VL+ + G I G TGSGK++L+ + +E + G I G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------------- 99
Query: 1131 RLSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGE 1190
R+S Q + GT++ N+ Y + + CQL ++ + ++ + E G
Sbjct: 100 RVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV 159
Query: 1191 NWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTAT-DNLIQQTLRQHFSDCTVITIAHR 1249
S GQR + L R D +D T + + + + + ++ T I + +
Sbjct: 160 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSK 219
Query: 1250 ITSVIDSDMVLLLSHG 1265
+ + +D +L+L G
Sbjct: 220 MEHLRKADKILILHQG 235
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 167 bits (423), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 83/203 (40%), Positives = 127/203 (62%)
Query: 632 NPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWI 691
NP L++INL + G +A+ G+ GSGK+SLL ILGE+ G +K G ++ +Q WI
Sbjct: 51 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWI 110
Query: 692 QSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQ 751
G I++NI+FG D +Y V++AC L++D+ + D TV+GE G+ LSGGQ+ RI
Sbjct: 111 MPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARIS 170
Query: 752 IARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLIL 811
+ARA+Y+DAD+YL D PF +D T +F+ + L+ +KT I VT ++E L AD IL
Sbjct: 171 LARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKIL 230
Query: 812 VMKDGKITQAGKYNDILNSGTDF 834
++ G G ++++ + DF
Sbjct: 231 ILHQGSSYFYGTFSELQSLRPDF 253
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 79/196 (40%), Gaps = 14/196 (7%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
VL+ + G I G TGSGK++L+ + +E + G I G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------------- 99
Query: 1131 RLSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGE 1190
R+S Q + GT++ N+ Y + + CQL ++ + ++ + E G
Sbjct: 100 RVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV 159
Query: 1191 NWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTAT-DNLIQQTLRQHFSDCTVITIAHR 1249
S GQR + L R D +D T + + + + + ++ T I + +
Sbjct: 160 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSK 219
Query: 1250 ITSVIDSDMVLLLSHG 1265
+ + +D +L+L G
Sbjct: 220 MEHLRKADKILILHQG 235
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 165 bits (417), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 125/202 (61%)
Query: 633 PTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQ 692
P L+DIN K+ G +AV G+ G+GK+SLL I+GE+ G +K G ++ +Q WI
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIM 111
Query: 693 SGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 752
G I++NI+ G D +Y V++AC L++D+ + D V+GE GI LSGGQ+ RI +
Sbjct: 112 PGTIKENIIAGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISL 171
Query: 753 ARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILV 812
ARA+Y+DAD+YL D PF +D T +F+ + L+ +KT I VT ++E L AD IL+
Sbjct: 172 ARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILI 231
Query: 813 MKDGKITQAGKYNDILNSGTDF 834
+ +G G ++++ N DF
Sbjct: 232 LHEGSSYFYGTFSELQNLQPDF 253
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 81/196 (41%), Gaps = 14/196 (7%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
VL+ + G + G TG+GK++L+ + +EP+ G+I G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 1131 RLSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGE 1190
R+S Q + GT++ N+ Y + + CQL +++ K + + E G
Sbjct: 100 RISFCSQFSWIMPGTIKENIIAGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI 159
Query: 1191 NWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTATDNLI-QQTLRQHFSDCTVITIAHR 1249
S GQR + L R D +D T+ I + + + ++ T I + +
Sbjct: 160 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK 219
Query: 1250 ITSVIDSDMVLLLSHG 1265
+ + +D +L+L G
Sbjct: 220 MEHLKKADKILILHEG 235
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 164 bits (416), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 82/203 (40%), Positives = 126/203 (62%)
Query: 632 NPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWI 691
NP L++INL + G +A+ G+ GSGK+SLL ILGE+ G +K G ++ +Q WI
Sbjct: 51 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWI 110
Query: 692 QSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQ 751
G I++NI+ G D +Y V++AC L++D+ + D TV+GE G+ LSGGQ+ RI
Sbjct: 111 MPGTIKENIISGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARIS 170
Query: 752 IARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLIL 811
+ARA+Y+DAD+YL D PF +D T +F+ + L+ +KT I VT ++E L AD IL
Sbjct: 171 LARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKIL 230
Query: 812 VMKDGKITQAGKYNDILNSGTDF 834
++ G G ++++ + DF
Sbjct: 231 ILHQGSSYFYGTFSELQSLRPDF 253
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 79/196 (40%), Gaps = 14/196 (7%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
VL+ + G I G TGSGK++L+ + +E + G I G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------------- 99
Query: 1131 RLSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGE 1190
R+S Q + GT++ N+ Y + + CQL ++ + ++ + E G
Sbjct: 100 RVSFCSQFSWIMPGTIKENIISGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV 159
Query: 1191 NWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTAT-DNLIQQTLRQHFSDCTVITIAHR 1249
S GQR + L R D +D T + + + + + ++ T I + +
Sbjct: 160 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSK 219
Query: 1250 ITSVIDSDMVLLLSHG 1265
+ + +D +L+L G
Sbjct: 220 MEHLRKADKILILHQG 235
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 164 bits (416), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 82/203 (40%), Positives = 126/203 (62%)
Query: 632 NPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWI 691
NP L++INL + G +A+ G+ GSGK+SLL ILGE+ G +K G ++ +Q WI
Sbjct: 51 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWI 110
Query: 692 QSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQ 751
G I++NI+ G D +Y V++AC L++D+ + D TV+GE G+ LSGGQ+ RI
Sbjct: 111 MPGTIKENIIRGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARIS 170
Query: 752 IARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLIL 811
+ARA+Y+DAD+YL D PF +D T +F+ + L+ +KT I VT ++E L AD IL
Sbjct: 171 LARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKIL 230
Query: 812 VMKDGKITQAGKYNDILNSGTDF 834
++ G G ++++ + DF
Sbjct: 231 ILHQGSSYFYGTFSELQSLRPDF 253
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 79/196 (40%), Gaps = 14/196 (7%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
VL+ + G I G TGSGK++L+ + +E + G I G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------------- 99
Query: 1131 RLSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGE 1190
R+S Q + GT++ N+ Y + + CQL ++ + ++ + E G
Sbjct: 100 RVSFCSQFSWIMPGTIKENIIRGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV 159
Query: 1191 NWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTAT-DNLIQQTLRQHFSDCTVITIAHR 1249
S GQR + L R D +D T + + + + + ++ T I + +
Sbjct: 160 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSK 219
Query: 1250 ITSVIDSDMVLLLSHG 1265
+ + +D +L+L G
Sbjct: 220 MEHLRKADKILILHQG 235
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 162 bits (411), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 125/202 (61%)
Query: 633 PTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQ 692
P L+DIN K+ G +AV G+ G+GK+SLL I+GE+ G +K G ++ +Q WI
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIM 111
Query: 693 SGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 752
G I++NI+FG D +Y V++AC L++D+ + D V+GE GI LS GQ+ +I +
Sbjct: 112 PGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKISL 171
Query: 753 ARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILV 812
ARA+Y+DAD+YL D PF +D T +F+ + L+ +KT I VT ++E L AD IL+
Sbjct: 172 ARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILI 231
Query: 813 MKDGKITQAGKYNDILNSGTDF 834
+ +G G ++++ N DF
Sbjct: 232 LHEGSSYFYGTFSELQNLQPDF 253
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 81/196 (41%), Gaps = 14/196 (7%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
VL+ + G + G TG+GK++L+ + +EP+ G+I G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 1131 RLSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGE 1190
R+S Q + GT++ N+ Y + + CQL +++ K + + E G
Sbjct: 100 RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI 159
Query: 1191 NWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTATDNLI-QQTLRQHFSDCTVITIAHR 1249
S GQ+ + L R D +D T+ I + + + ++ T I + +
Sbjct: 160 TLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK 219
Query: 1250 ITSVIDSDMVLLLSHG 1265
+ + +D +L+L G
Sbjct: 220 MEHLKKADKILILHEG 235
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 162 bits (410), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 126/202 (62%), Gaps = 1/202 (0%)
Query: 633 PTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQ 692
P L+DIN K+ G +AV G+ G+GK+SLL I+GE+ G +K G ++ +Q+ WI
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIM 111
Query: 693 SGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 752
G I++NI+ G D +Y V++AC L++D+ + D V+GE GI LSGGQ+ RI +
Sbjct: 112 PGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISL 170
Query: 753 ARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILV 812
ARA+Y+DAD+YL D PF +D T +F+ + L+ +KT I VT ++E L AD IL+
Sbjct: 171 ARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILI 230
Query: 813 MKDGKITQAGKYNDILNSGTDF 834
+ +G G ++++ N DF
Sbjct: 231 LHEGSSYFYGTFSELQNLRPDF 252
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 87/198 (43%), Gaps = 19/198 (9%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
VL+ + G + G TG+GK++L+ + +EP+ G+I G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 1131 RLSIIPQDPTMFEGTVRNNLDPL--EEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTEN 1188
R+S Q+ + GT++ N+ + +EY+ + +A CQL +++ K + + E
Sbjct: 100 RISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKA---CQLEEDISKFAEKDNIVLGEG 156
Query: 1189 GENWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTATDNLI-QQTLRQHFSDCTVITIA 1247
G S GQR + L R D +D T+ I + + + ++ T I +
Sbjct: 157 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 216
Query: 1248 HRITSVIDSDMVLLLSHG 1265
++ + +D +L+L G
Sbjct: 217 SKMEHLKKADKILILHEG 234
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 162 bits (410), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 126/202 (62%), Gaps = 1/202 (0%)
Query: 633 PTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQ 692
P L+DIN K+ G +AV G+ G+GK+SLL I+GE+ G +K G ++ +Q+ WI
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIM 111
Query: 693 SGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 752
G I++NI+ G D +Y V++AC L++D+ + D V+GE GI LSGGQ+ RI +
Sbjct: 112 PGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISL 170
Query: 753 ARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILV 812
ARA+Y+DAD+YL D PF +D T +F+ + L+ +KT I VT ++E L AD IL+
Sbjct: 171 ARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILI 230
Query: 813 MKDGKITQAGKYNDILNSGTDF 834
+ +G G ++++ N DF
Sbjct: 231 LHEGSSYFYGTFSELQNLRPDF 252
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 87/198 (43%), Gaps = 19/198 (9%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
VL+ + G + G TG+GK++L+ + +EP+ G+I G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 1131 RLSIIPQDPTMFEGTVRNNLDPL--EEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTEN 1188
R+S Q+ + GT++ N+ + +EY+ + +A CQL +++ K + + E
Sbjct: 100 RISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKA---CQLEEDISKFAEKDNIVLGEG 156
Query: 1189 GENWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTATDNLI-QQTLRQHFSDCTVITIA 1247
G S GQR + L R D +D T+ I + + + ++ T I +
Sbjct: 157 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 216
Query: 1248 HRITSVIDSDMVLLLSHG 1265
++ + +D +L+L G
Sbjct: 217 SKMEHLKKADKILILHEG 234
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 162 bits (410), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 87/222 (39%), Positives = 132/222 (59%), Gaps = 4/222 (1%)
Query: 615 TAIEIVDGNFA--WDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKI 672
T E+V N W+ P L+DIN K+ G +AV G+ G+GK+SLL I+GE+
Sbjct: 3 TTTEVVMENVTAFWE-EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS 61
Query: 673 SGTLKLCGTKAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQ 732
G +K G ++ +Q WI G I++NI+ G D +Y V++AC L++D+ + D
Sbjct: 62 EGKIKHSGRISFCSQFSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDN 120
Query: 733 TVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSK 792
V+GE GI LSGGQ+ RI +ARA+Y+DAD+YL D PF +D T +F+ + L+ +K
Sbjct: 121 IVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK 180
Query: 793 TVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDF 834
T I VT ++E L AD IL++ +G G ++++ N DF
Sbjct: 181 TRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDF 222
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 93/218 (42%), Gaps = 19/218 (8%)
Query: 1051 THGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTA 1110
T EV + N+ + VL+ + G + G TG+GK++L+ + +EP+
Sbjct: 3 TTTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62
Query: 1111 GEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPL--EEYKDEEIWEALDKC 1168
G+I G R+S Q + GT++ N+ + +EY+ + +A C
Sbjct: 63 GKIKHSG-------------RISFCSQFSWIMPGTIKENIIGVSYDEYRYRSVIKA---C 106
Query: 1169 QLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTATDN 1228
QL +++ K + + E G S GQR + L R D +D T+
Sbjct: 107 QLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEK 166
Query: 1229 LI-QQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHG 1265
I + + + ++ T I + ++ + +D +L+L G
Sbjct: 167 EIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEG 204
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 160 bits (406), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 82/203 (40%), Positives = 126/203 (62%), Gaps = 1/203 (0%)
Query: 632 NPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWI 691
NP L++INL + G +A+ G+ GSGK+SLL ILGE+ G +K G ++ +Q WI
Sbjct: 51 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWI 110
Query: 692 QSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQ 751
G I++NI+ G D +Y V++AC L++D+ + D TV+GE G+ LSGGQ+ RI
Sbjct: 111 MPGTIKENII-GVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARIS 169
Query: 752 IARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLIL 811
+ARA+Y+DAD+YL D PF +D T +F+ + L+ +KT I VT ++E L AD IL
Sbjct: 170 LARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKIL 229
Query: 812 VMKDGKITQAGKYNDILNSGTDF 834
++ G G ++++ + DF
Sbjct: 230 ILHQGSSYFYGTFSELQSLRPDF 252
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 85/198 (42%), Gaps = 19/198 (9%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
VL+ + G I G TGSGK++L+ + +E + G I G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------------- 99
Query: 1131 RLSIIPQDPTMFEGTVRNNLDPL--EEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTEN 1188
R+S Q + GT++ N+ + +EY+ + + +A CQL ++ + ++ + E
Sbjct: 100 RVSFCSQFSWIMPGTIKENIIGVSYDEYRYKSVVKA---CQLQQDITKFAEQDNTVLGEG 156
Query: 1189 GENWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTAT-DNLIQQTLRQHFSDCTVITIA 1247
G S GQR + L R D +D T + + + + + ++ T I +
Sbjct: 157 GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT 216
Query: 1248 HRITSVIDSDMVLLLSHG 1265
++ + +D +L+L G
Sbjct: 217 SKMEHLRKADKILILHQG 234
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 157 bits (397), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 135/248 (54%), Gaps = 3/248 (1%)
Query: 1039 VIEES--RPDCSWPTHGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKS 1096
+IE S + D WP+ G++ + +L +Y +L ++ + G + G++GRTGSGKS
Sbjct: 2 LIENSHVKKDDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKS 61
Query: 1097 TLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEY 1156
TL+ R++ T GEI IDG++ SI L R +IPQ +F GT R NLDP +
Sbjct: 62 TLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAH 120
Query: 1157 KDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRXXXXXXXXXXXD 1216
D+EIW+ D+ L + GKLD + + G S G +QL+CL R D
Sbjct: 121 SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLD 180
Query: 1217 EATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKL 1276
E +A +D T +I++TL+Q F+DCTVI RI ++++ D L++ + +YDS +L
Sbjct: 181 EPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILEL 240
Query: 1277 LENKSSSF 1284
+ F
Sbjct: 241 YHYPADRF 248
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 95/211 (45%), Gaps = 18/211 (8%)
Query: 632 NPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT---------- 681
N L +I+ + G RV + G GSGKS+LLS L + G +++ G
Sbjct: 34 NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLLNTEGEIQIDGVSWDSITLEQW 92
Query: 682 -KAY--VAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGER 738
KA+ + Q +I SG N+ ++ +V + L+ +E V+ +
Sbjct: 93 RKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDG 152
Query: 739 GINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVT 798
G LS G KQ + +AR++ A I L D+P + +D T + + L TVI
Sbjct: 153 GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVT-YQIIRRTLKQAFADCTVILCE 211
Query: 799 HQVEFLPAADLILVMKDGKITQAGKYNDILN 829
++E + D LV+++ K+ Q Y+ IL
Sbjct: 212 ARIEAMLECDQFLVIEENKVRQ---YDSILE 239
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 155 bits (393), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 124/202 (61%), Gaps = 1/202 (0%)
Query: 633 PTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQ 692
P L+DIN K+ G +AV G+ G+GK+SLL I+GE+ G +K G ++ +Q WI
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIM 111
Query: 693 SGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQI 752
G I++NI+ G D +Y V++AC L++D+ + D V+GE GI LS GQ+ +I +
Sbjct: 112 PGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKISL 170
Query: 753 ARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILV 812
ARA+Y+DAD+YL D PF +D T +F+ + L+ +KT I VT ++E L AD IL+
Sbjct: 171 ARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILI 230
Query: 813 MKDGKITQAGKYNDILNSGTDF 834
+ +G G ++++ N DF
Sbjct: 231 LHEGSSYFYGTFSELQNLQPDF 252
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 86/198 (43%), Gaps = 19/198 (9%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
VL+ + G + G TG+GK++L+ + +EP+ G+I G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 1131 RLSIIPQDPTMFEGTVRNNLDPL--EEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTEN 1188
R+S Q + GT++ N+ + +EY+ + +A CQL +++ K + + E
Sbjct: 100 RISFCSQFSWIMPGTIKENIIGVSYDEYRYRSVIKA---CQLEEDISKFAEKDNIVLGEG 156
Query: 1189 GENWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTATDNLI-QQTLRQHFSDCTVITIA 1247
G S GQ+ + L R D +D T+ I + + + ++ T I +
Sbjct: 157 GITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 216
Query: 1248 HRITSVIDSDMVLLLSHG 1265
++ + +D +L+L G
Sbjct: 217 SKMEHLKKADKILILHEG 234
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 587
Score = 141 bits (355), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 107/371 (28%), Positives = 178/371 (47%), Gaps = 19/371 (5%)
Query: 918 ETISGSTTIRSFDQES----RFRDTNMKLVDGYSRPKFHIAGAMEWLCF--RLDMLSSLT 971
E + G +R+F +E FR N L I A+ F + M++ L
Sbjct: 207 ENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPLFIFIVNMGMIAVLW 266
Query: 972 FAFSLVLLISIPKGVIEPAIAGLAVTYGLNLNMLQAWVIWNLCN-LENKIISVERILQYT 1030
F LV + G I +A T L M +I N+ N + S +R+L+
Sbjct: 267 FGGVLVRNNQMEIGSI------MAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLE-- 318
Query: 1031 CISSEPPLVIEESRPDCSWPT-HGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVG 1089
+ +E P IEE+ + P G V N++ RY + VL G+ + G ++G
Sbjct: 319 -VLNEKP-AIEEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLG 376
Query: 1090 RTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNN 1149
TGSGKSTL+ + R+++P G + +D +++ ++ L DLR +S +PQ+ +F GT++ N
Sbjct: 377 ETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKEN 436
Query: 1150 LD-PLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRXXXX 1208
L E+ D+EI EA Q+ D + + DSRV G N+S GQ+Q + + R
Sbjct: 437 LKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVK 496
Query: 1209 XXXXXXXDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIE 1268
D+ T+SVD T+ I L+++ CT I +I + + +D +L+L G +
Sbjct: 497 KPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVA 556
Query: 1269 EYDSPTKLLEN 1279
+ + +LLE+
Sbjct: 557 GFGTHKELLEH 567
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 118/485 (24%), Positives = 219/485 (45%), Gaps = 57/485 (11%)
Query: 380 VYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGWYM-----HDPWLVILQVSLALLI 434
++ K L+ S + + +I +T D ++ + + P L + + +A+ I
Sbjct: 102 LFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSI 161
Query: 435 LYKNLGLASIAALFATVLIMLTNFPLGRLQENFQDKLMGSKDKRMKVTSEIL---RNMRI 491
N+ L+S+ +++L + + F+ K+ S D+ +V E L R +R
Sbjct: 162 ---NVKLSSVLIFLIPPIVLLFVWLTKKGNPLFR-KIQESTDEVNRVVRENLLGVRVVRA 217
Query: 492 LKLQGWEMKFLSKIIE-LRK--IEAGWLKKFLYTGAMTSFVFWGAPTFVSVATFGACMLL 548
+ + +E + K E LR+ I A L F A+ F+F ++V FG ++
Sbjct: 218 FRREEYENENFRKANESLRRSIISAFSLIVF----ALPLFIFIVNMGMIAVLWFGGVLVR 273
Query: 549 GIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQSDVVEKH 608
+E G I++ + + + + ++ I++ S R+ L + +E+
Sbjct: 274 NNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLN----EKPAIEE- 328
Query: 609 PRGSSETAIEIVDGNFAWD------ISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLL 662
+ A+ V+G+ +++ + +P L +N V G VAV G GSGKS+L+
Sbjct: 329 --ADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLM 386
Query: 663 SCILGEVPKISG----------TLKLCGTKAYVAQSPW---IQSGNIEDNILFGKPMDRE 709
+ I + G T+KL + +++ P + SG I++N+ +G+ +
Sbjct: 387 NLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGR--EDA 444
Query: 710 KYDRVLEACSLKK--DLEI-LSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFD 766
D ++EA + + D I L G + + G N SGGQKQR+ IARAL + + + D
Sbjct: 445 TDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILD 504
Query: 767 DPFSAVDAHTGSHLFKEVLLGLLRSK---TVIYVTHQVEFLPAADLILVMKDGKITQAGK 823
D S+VD T K +L GL R T +T ++ AD ILV+ +GK+ G
Sbjct: 505 DCTSSVDPITE----KRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGT 560
Query: 824 YNDIL 828
+ ++L
Sbjct: 561 HKELL 565
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 598
Score = 136 bits (342), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 119/415 (28%), Positives = 197/415 (47%), Gaps = 41/415 (9%)
Query: 892 QYYIPSARELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESR----FRDTNMKLVDGYS 947
+Y+ + R L +L G+ + E ISG T I+ F +E + F N L +
Sbjct: 203 KYFYENQRVLGQLNGIIE--------EDISGLTVIKLFTREEKEMEKFDRVNESLRKVGT 254
Query: 948 RPKFHIAGAMEWLCFRLDMLSSLTFAFS------LVLLISIPKGVIEPAIAGLAVTYGLN 1001
+ + +G + L ++M+++L FA L L I G I I G + +
Sbjct: 255 KAQI-FSGVLPPL---MNMVNNLGFALISGFGGWLALKDIITVGTIATFI-GYSRQFTRP 309
Query: 1002 LNMLQAWVIWNLCNLENKIISVERILQYTCISSEPPLVIEESRPDCS--WPTHGEVDILN 1059
LN L +N+ + + S ERI + + E + PD GE++ N
Sbjct: 310 LNELSNQ--FNMIQM--ALASAERIFEILDLEEE------KDDPDAVELREVRGEIEFKN 359
Query: 1060 LQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGIN 1119
+ Y P VL+ +T G K +VG TGSGK+T++ L R + G+I++DGI+
Sbjct: 360 VWFSYDKKKP-VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGID 418
Query: 1120 ISSIGLHDLRSRLSIIPQDPTMFEGTVRNNL---DPLEEYKDEEIWEALDKCQLGDEVRN 1176
I I LRS + I+ QD +F TV+ NL +P DEEI EA +++
Sbjct: 419 IRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNP--GATDEEIKEAAKLTHSDHFIKH 476
Query: 1177 KEGKLDSRVTENGENWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTATDNLIQQTLRQ 1236
++ +T+NGE+ S GQRQL+ + R DEAT++VDT T+ IQ + +
Sbjct: 477 LPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWK 536
Query: 1237 HFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVAEY 1291
T I IAHR+ ++ ++D++++L G I E +L++ + + ++Y
Sbjct: 537 LMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYELFTSQY 591
Score = 102 bits (255), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/315 (26%), Positives = 153/315 (48%), Gaps = 30/315 (9%)
Query: 536 FVSVATFGACMLLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFL 595
F ++ FG + L + G I + + R P+ L + +MI S +RI L
Sbjct: 275 FALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEIL 334
Query: 596 CLDDLQSD--VVE-KHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCG 652
L++ + D VE + RG IE + F++D P L+DI + G +VA+ G
Sbjct: 335 DLEEEKDDPDAVELREVRGE----IEFKNVWFSYD--KKKPVLKDITFHIKPGQKVALVG 388
Query: 653 TVGSGKSSLLSCILG--------------EVPKISGTLKLCGTKAYVAQSPWIQSGNIED 698
GSGK+++++ ++ ++ KI + L + V Q + S +++
Sbjct: 389 PTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRS-SLRSSIGIVLQDTILFSTTVKE 447
Query: 699 NILFGKPMDREKYDRVLEACSLKKD---LEILSFGDQTVIGERGINLSGGQKQRIQIARA 755
N+ +G P + + + EA L ++ L G +TV+ + G +LS GQ+Q + I RA
Sbjct: 448 NLKYGNPGATD--EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRA 505
Query: 756 LYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKD 815
+ I + D+ S VD T + + + L+ KT I + H++ + ADLI+V++D
Sbjct: 506 FLANPKILILDEATSNVDTKTEKSI-QAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRD 564
Query: 816 GKITQAGKYNDILNS 830
G+I + GK+++++
Sbjct: 565 GEIVEMGKHDELIQK 579
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 125 bits (315), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 148/280 (52%), Gaps = 14/280 (5%)
Query: 1030 TCISSEPPLVIEESRPDCSWPTHG-EVDILNLQVRYA---------PHLPLVLRGLTCTF 1079
T +S +IE++ S+ T G + ++L V+++ P +P VL+GL+
Sbjct: 998 TVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIP-VLQGLSLEV 1056
Query: 1080 PGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDP 1139
G +VG +G GKST++Q L R +P AG + +DG I + + LR++L I+ Q+P
Sbjct: 1057 KKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEP 1116
Query: 1140 TMFEGTVRNNL---DPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQ 1196
+F+ ++ N+ D EEI A + + + + K ++RV + G S GQ
Sbjct: 1117 ILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQ 1176
Query: 1197 RQLVCLGRXXXXXXXXXXXDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDS 1256
+Q + + R DEAT+++DT ++ ++Q+ L + T I IAHR++++ ++
Sbjct: 1177 KQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNA 1236
Query: 1257 DMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVAEYTQRSS 1296
D+++++ +G ++E+ + +LL K F+ + + + S
Sbjct: 1237 DLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQAGAKRS 1276
Score = 115 bits (288), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 130/259 (50%), Gaps = 8/259 (3%)
Query: 1044 RPDCSWPTHGEVDILNLQVRYAPHLPL-VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTL 1102
+PD G ++ N+ Y + +L+GL G +VG +G GKST +Q +
Sbjct: 380 KPDN---IQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM 436
Query: 1103 FRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLD-PLEEYKDEEI 1161
R+ +P G + IDG +I +I + LR + ++ Q+P +F T+ N+ E+ +EI
Sbjct: 437 QRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEI 496
Query: 1162 WEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRXXXXXXXXXXXDEATAS 1221
+A+ + D + + D+ V E G S GQ+Q + + R DEAT++
Sbjct: 497 EKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSA 556
Query: 1222 VDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKS 1281
+DT ++ ++Q L + T I IAHR+++V ++D++ G+I E + +L+ K
Sbjct: 557 LDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKG 616
Query: 1282 SSFAQLVAEYTQRSSSSLE 1300
F ++ TQ + + +E
Sbjct: 617 IYFKLVM---TQTAGNEIE 632
Score = 96.7 bits (239), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 111/440 (25%), Positives = 197/440 (44%), Gaps = 69/440 (15%)
Query: 438 NLGLASIAAL---FATVLIMLTNFPLGRLQENFQDKLMGS---KDKRM-----KVTSEIL 486
NLG I +L + L++L P+ + + K++ KDK+ K+ +E +
Sbjct: 838 NLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAI 897
Query: 487 RNMRILKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGAMTSFVFWGAPTFVSVATFGACM 546
N R + E KF + + +I K + +T F F A + S + AC
Sbjct: 898 ENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGIT-FSFTQAMMYFS---YAACF 953
Query: 547 LLGIPLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQSDV-- 604
G L + L TF N+ S I+ +++ +++SF D ++ V
Sbjct: 954 RFGAYL----VTQQLMTFE-------NVLLVFSAIVFGAMAVGQVSSF-APDYAKATVSA 1001
Query: 605 ------VEKHPRGSSETA----IEIVDGN-------FAWDISSNNPTLRDINLKVFHGMR 647
+EK P S + +++GN F + + P L+ ++L+V G
Sbjct: 1002 SHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQT 1061
Query: 648 VAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-------------AYVAQSPWIQSG 694
+A+ G+ G GKS+++ + ++G++ L G + V+Q P +
Sbjct: 1062 LALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDC 1121
Query: 695 NIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGD------QTVIGERGINLSGGQKQ 748
+I +NI +G Y+ ++ A K+ I F D T +G++G LSGGQKQ
Sbjct: 1122 SIAENIAYGDNSRVVSYEEIVRAA---KEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQ 1178
Query: 749 RIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAAD 808
RI IARAL + I L D+ SA+D + + +E L +T I + H++ + AD
Sbjct: 1179 RIAIARALVRQPHILLLDEATSALDTES-EKVVQEALDKAREGRTCIVIAHRLSTIQNAD 1237
Query: 809 LILVMKDGKITQAGKYNDIL 828
LI+V+++GK+ + G + +L
Sbjct: 1238 LIVVIQNGKVKEHGTHQQLL 1257
Score = 87.0 bits (214), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 108/473 (22%), Positives = 203/473 (42%), Gaps = 65/473 (13%)
Query: 390 QAKQSYTSGEIINFMTVDAERIGDFGWYMHDPWLVILQVSLALLILYKNLGLASIAALFA 449
QA ++ G II F GW +++L +L + LGL+ A ++A
Sbjct: 191 QAMATFFGGFIIGFTR---------GW----------KLTLVILAISPVLGLS--AGIWA 229
Query: 450 TVLIMLTNFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIE-L 508
+L +F DK + + K V E+L +R + G + K L + L
Sbjct: 230 KIL------------SSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNL 277
Query: 509 RKIEAGWLKKFLYTGAMTSFVFWGAPTFVSVATF------GACMLLGIPLESGKILSALA 562
+ + +KK A+T+ + GA + A++ G +++ G++L+
Sbjct: 278 EEAKRLGIKK-----AITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFF 332
Query: 563 TFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQS-DVVEK--HPRGSSETAIEI 619
+ I + I + + + F +D+ S D K H + + +E
Sbjct: 333 SVLIGAFSVGQASPNIEAFANARGAAYEV--FKIIDNKPSIDSFSKSGHKPDNIQGNLEF 390
Query: 620 VDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLC 679
+ +F++ L+ +NLKV G VA+ G G GKS+ + + + G + +
Sbjct: 391 KNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSID 450
Query: 680 GTK-------------AYVAQSPWIQSGNIEDNILFGKP-MDREKYDRVLEACSLKKDLE 725
G V+Q P + + I +NI +G+ + ++ ++ ++ + +
Sbjct: 451 GQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIM 510
Query: 726 ILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL 785
L T++GERG LSGGQKQRI IARAL ++ I L D+ SA+D + + + + L
Sbjct: 511 KLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEA-VVQAAL 569
Query: 786 LGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMVLV 838
+T I + H++ + AD+I G I + G +++++ + LV
Sbjct: 570 DKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLV 622
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 125 bits (314), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 148/280 (52%), Gaps = 14/280 (5%)
Query: 1030 TCISSEPPLVIEESRPDCSWPTHG-EVDILNLQVRYA---------PHLPLVLRGLTCTF 1079
T +S +IE++ S+ T G + ++L V+++ P +P VL+GL+
Sbjct: 998 TVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIP-VLQGLSLEV 1056
Query: 1080 PGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDP 1139
G +VG +G GKST++Q L R +P AG + +DG I + + LR++L I+ Q+P
Sbjct: 1057 KKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEP 1116
Query: 1140 TMFEGTVRNNL---DPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQ 1196
+F+ ++ N+ D EEI A + + + + K ++RV + G S GQ
Sbjct: 1117 ILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQ 1176
Query: 1197 RQLVCLGRXXXXXXXXXXXDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDS 1256
+Q + + R DEAT+++DT ++ ++Q+ L + T I IAHR++++ ++
Sbjct: 1177 KQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNA 1236
Query: 1257 DMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVAEYTQRSS 1296
D+++++ +G ++E+ + +LL K F+ + + + S
Sbjct: 1237 DLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQAGAKRS 1276
Score = 115 bits (288), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 130/259 (50%), Gaps = 8/259 (3%)
Query: 1044 RPDCSWPTHGEVDILNLQVRYAPHLPL-VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTL 1102
+PD G ++ N+ Y + +L+GL G +VG +G GKST +Q +
Sbjct: 380 KPDN---IQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM 436
Query: 1103 FRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLD-PLEEYKDEEI 1161
R+ +P G + IDG +I +I + LR + ++ Q+P +F T+ N+ E+ +EI
Sbjct: 437 QRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEI 496
Query: 1162 WEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRXXXXXXXXXXXDEATAS 1221
+A+ + D + + D+ V E G S GQ+Q + + R DEAT++
Sbjct: 497 EKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSA 556
Query: 1222 VDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKS 1281
+DT ++ ++Q L + T I IAHR+++V ++D++ G+I E + +L+ K
Sbjct: 557 LDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKG 616
Query: 1282 SSFAQLVAEYTQRSSSSLE 1300
F ++ TQ + + +E
Sbjct: 617 IYFKLVM---TQTAGNEIE 632
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 114/224 (50%), Gaps = 23/224 (10%)
Query: 624 FAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK- 682
F + + P L+ ++L+V G +A+ G+ G GKS+++ + ++G++ L G +
Sbjct: 1038 FNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEI 1097
Query: 683 ------------AYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFG 730
V+Q P + +I +NI +G Y+ ++ A K+ I F
Sbjct: 1098 KQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAA---KEANIHQFI 1154
Query: 731 D------QTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEV 784
D T +G++G LSGGQKQRI IARAL + I L D+ SA+D + + +E
Sbjct: 1155 DSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTES-EKVVQEA 1213
Query: 785 LLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDIL 828
L +T I + H++ + ADLI+V+++GK+ + G + +L
Sbjct: 1214 LDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLL 1257
Score = 86.7 bits (213), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 108/473 (22%), Positives = 203/473 (42%), Gaps = 65/473 (13%)
Query: 390 QAKQSYTSGEIINFMTVDAERIGDFGWYMHDPWLVILQVSLALLILYKNLGLASIAALFA 449
QA ++ G II F GW +++L +L + LGL+ A ++A
Sbjct: 191 QAMATFFGGFIIGFTR---------GW----------KLTLVILAISPVLGLS--AGIWA 229
Query: 450 TVLIMLTNFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGWEMKFLSKIIE-L 508
+L +F DK + + K V E+L +R + G + K L + L
Sbjct: 230 KIL------------SSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNL 277
Query: 509 RKIEAGWLKKFLYTGAMTSFVFWGAPTFVSVATF------GACMLLGIPLESGKILSALA 562
+ + +KK A+T+ + GA + A++ G +++ G++L+
Sbjct: 278 EEAKRLGIKK-----AITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFF 332
Query: 563 TFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQS-DVVEK--HPRGSSETAIEI 619
+ I + I + + + F +D+ S D K H + + +E
Sbjct: 333 SVLIGAFSVGQASPNIEAFANARGAAYEV--FKIIDNKPSIDSFSKSGHKPDNIQGNLEF 390
Query: 620 VDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLC 679
+ +F++ L+ +NLKV G VA+ G G GKS+ + + + G + +
Sbjct: 391 KNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSID 450
Query: 680 GTK-------------AYVAQSPWIQSGNIEDNILFGKP-MDREKYDRVLEACSLKKDLE 725
G V+Q P + + I +NI +G+ + ++ ++ ++ + +
Sbjct: 451 GQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIM 510
Query: 726 ILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL 785
L T++GERG LSGGQKQRI IARAL ++ I L D+ SA+D + + + + L
Sbjct: 511 KLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEA-VVQAAL 569
Query: 786 LGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMVLV 838
+T I + H++ + AD+I G I + G +++++ + LV
Sbjct: 570 DKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLV 622
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 125 bits (313), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 126/237 (53%), Gaps = 3/237 (1%)
Query: 1053 GEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGE 1112
G+V+ N+ Y LR + P G +VGR+GSGKST+ + R + GE
Sbjct: 340 GDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGE 399
Query: 1113 IVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLD--PLEEYKDEEIWEALDKCQL 1170
I++DG ++ L LR++++++ Q+ +F TV NN+ E+Y E+I EA
Sbjct: 400 ILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYA 459
Query: 1171 GDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTATDNLI 1230
D + + LD+ + ENG S GQRQ + + R DEAT+++DT ++ I
Sbjct: 460 MDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 519
Query: 1231 QQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQL 1287
Q L + + T + IAHR++++ +D ++++ G+I E + LLE++ +AQL
Sbjct: 520 QAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHR-GVYAQL 575
Score = 109 bits (272), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 124/475 (26%), Positives = 217/475 (45%), Gaps = 67/475 (14%)
Query: 385 LTLSCQAKQSYTSGEIINFMTVDAERIGDFGWYMHDPWLVILQVSLALLILYKNLGLA-- 442
+T + S +SG +I + A IG F + W Q+S+ L++L + +A
Sbjct: 128 ITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSW----QLSIILIVLAPIVSIAIR 183
Query: 443 SIAALFATVLIMLTNFPLGRLQENFQDKLMGSKD-----------KRMKVTSEILRNMRI 491
++ F + + N +G++ + + L G K+ KR S +R
Sbjct: 184 VVSKRFRNISKNMQN-TMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMR---- 238
Query: 492 LKLQGWEMKFLSKIIELRKIEAGWLKKFLYTGAMTSFVFWGAPTFVSVATFGACMLLGIP 551
LQG +M S I + + + + + A+ +FV + A +F SV
Sbjct: 239 --LQGMKMVSASSI-------SDPIIQLIASLAL-AFVLYAA-SFPSVMD---------S 278
Query: 552 LESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQSDVVEKHPRG 611
L +G I ++ L P+ +L + + + + + F LD Q K
Sbjct: 279 LTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTL--FTILDSEQEKDEGKRVIE 336
Query: 612 SSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCIL----- 666
+ +E + F + + P LR+INLK+ G VA+ G GSGKS++ S I
Sbjct: 337 RATGDVEFRNVTFTYP-GRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI 395
Query: 667 --GEVPKISGTLK------LCGTKAYVAQSPWIQSGNIEDNILFGKPMDREKYDR--VLE 716
GE+ L+ L A V+Q+ + + + +NI + + E+Y R + E
Sbjct: 396 DEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYART---EQYSREQIEE 452
Query: 717 ACSLKKDLEILSFGDQ---TVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVD 773
A + ++ ++ D TVIGE G+ LSGGQ+QRI IARAL +D+ I + D+ SA+D
Sbjct: 453 AARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALD 512
Query: 774 AHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDIL 828
+ + L L +++T + + H++ + AD I+V++DG I + G +ND+L
Sbjct: 513 TES-ERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLL 566
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 123 bits (308), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 138/547 (25%), Positives = 241/547 (44%), Gaps = 76/547 (13%)
Query: 443 SIAALFATVLIMLTNFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMR-ILKLQG--WEM 499
++ L T + L F + + F + K KV E + ++R ++ L G +E+
Sbjct: 239 TLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYEL 298
Query: 500 KFLSKIIELRKIEAGWLKKFLYT---GAM--TSFVFWGAPTFVSVA-------------- 540
+ S +E K +AG LK GAM ++F+ + ++ V
Sbjct: 299 ERYSTAVEEAK-KAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLT 357
Query: 541 TFGACMLLGIPLE-SGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDD 599
TF + M+ + L +G L+ L T + IY + D +I D
Sbjct: 358 TFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVI-----------------D 400
Query: 600 LQSDVVEKHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKS 659
S K + + +E V +F + + P LR +NL+V G VA+ G+ G GKS
Sbjct: 401 SSSKAGRKDMKIKGDITVENV--HFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKS 458
Query: 660 SLLSCILGEVPKISGTLKLCGTK-------------AYVAQSPWIQSGNIEDNILFGKP- 705
+++S +L + G + + G A V+Q P + + IE+NI GK
Sbjct: 459 TIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEG 518
Query: 706 MDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLF 765
+ RE+ + + +K ++ L G T++G+RG LSGGQKQRI IARAL ++ I L
Sbjct: 519 ITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLL 578
Query: 766 DDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYN 825
D+ SA+DA + + ++ L + +T I + H++ + ADLI+ K+G++ + G +
Sbjct: 579 DEATSALDAES-EGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHR 637
Query: 826 DILNSGTDFMVLVGAHQQALSALDSIEGGPVSERISMNKENGGMDTTNGVTMKEGNEDIQ 885
++ + LV A Q A+DS G S S+ ++ + G++ + D
Sbjct: 638 ALMAQQGLYYDLVTA-QTFTDAVDSAAEGKFSRENSVARQTSEHE---GLSRQASEMDDI 693
Query: 886 TDKVDEQYYIPSARELSRLVGVCKAPVIQHFSETISGSTTIRSFDQ---ESRFRDTNMKL 942
++V S + + PVI E I G + Q E+ + TN+
Sbjct: 694 MNRVRS----------STIGSITNGPVIDEKEERI-GKDALSRLKQELEENNAQKTNLFE 742
Query: 943 VDGYSRP 949
+ ++RP
Sbjct: 743 ILYHARP 749
Score = 117 bits (294), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 132/249 (53%), Gaps = 8/249 (3%)
Query: 1052 HGEVDILNLQVRYAPHLPLV--LRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPT 1109
+G+V N++ Y P P + L+GL+ + G +VG +G GKST++ L R +
Sbjct: 1074 YGKVIFKNVRFAY-PERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL 1132
Query: 1110 AGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNN----LDPLEEYKDEEIWEAL 1165
GEI IDG I ++ RS+++I+ Q+PT+F+ ++ N LDP ++ EA
Sbjct: 1133 GGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDP-SSVTMAQVEEAA 1191
Query: 1166 DKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTA 1225
+ + + ++RV + G S GQ+Q + + R DEAT+++DT
Sbjct: 1192 RLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTE 1251
Query: 1226 TDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFA 1285
++ ++Q+ L + T I IAHR+ +V+++D + ++S+G I E + T+L+ K + +
Sbjct: 1252 SEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKGAYYK 1311
Query: 1286 QLVAEYTQR 1294
+ T++
Sbjct: 1312 LTQKQMTEK 1320
Score = 110 bits (275), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 119/233 (51%), Gaps = 8/233 (3%)
Query: 1053 GEVDILNLQVRYA--PHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTA 1110
G++ + N+ Y P +P +LRG+ G +VG +G GKST+I L R +
Sbjct: 414 GDITVENVHFTYPSRPDVP-ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLK 472
Query: 1111 GEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQL 1170
G+I IDG+++ I L LR ++++ Q+P +F T+ N+ +E E E + C++
Sbjct: 473 GKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITRE--EMVAACKM 530
Query: 1171 GDE---VRNKEGKLDSRVTENGENWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTATD 1227
+ ++ ++ V + G S GQ+Q + + R DEAT+++D ++
Sbjct: 531 ANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESE 590
Query: 1228 NLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENK 1280
++QQ L + T I IAHR++++ ++D+++ +G + E L+ +
Sbjct: 591 GIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQ 643
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 109/222 (49%), Gaps = 17/222 (7%)
Query: 624 FAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK- 682
FA+ L+ ++ V G +A+ G G GKS++++ + + G + + G++
Sbjct: 1084 FAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEI 1143
Query: 683 ------------AYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKD---LEIL 727
A V+Q P + +I +NI++G +V EA L + L
Sbjct: 1144 KTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAEL 1203
Query: 728 SFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLG 787
G +T +G+RG LSGGQKQRI IARAL ++ I L D+ SA+D + + +E L
Sbjct: 1204 PEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES-EKVVQEALDR 1262
Query: 788 LLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILN 829
+T I + H++ + AD I V+ +G I + G + +++
Sbjct: 1263 AREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMS 1304
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 122 bits (306), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 124/238 (52%), Gaps = 3/238 (1%)
Query: 1052 HGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAG 1111
+GEVD+ ++ Y L ++ + P G +VGR+GSGKST+ R + +G
Sbjct: 339 NGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSG 398
Query: 1112 EIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEE--YKDEEIWEALDKCQ 1169
I +DG ++ L +LR +++ Q+ +F T+ NN+ E Y E+I +A +
Sbjct: 399 SICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAH 458
Query: 1170 LGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTATDNL 1229
+ + N LD+ + ENG + S GQRQ V + R DEAT+++DT ++
Sbjct: 459 AMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERA 518
Query: 1230 IQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQL 1287
IQ L + + TV+ IAHR++++ +D +L++ G I E LL + ++AQL
Sbjct: 519 IQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLA-QDGAYAQL 575
Score = 100 bits (249), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 117/227 (51%), Gaps = 17/227 (7%)
Query: 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 676
+++ D F + P L ++ + G VA+ G GSGKS++ + SG++
Sbjct: 342 VDVKDVTFTYQ-GKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSI 400
Query: 677 KLCGTK-------------AYVAQSPWIQSGNIEDNILFGKPMD--REKYDRVLEACSLK 721
L G A V+Q+ + + I +NI + + RE+ ++
Sbjct: 401 CLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAM 460
Query: 722 KDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLF 781
+ +E + G TVIGE G +LSGGQ+QR+ IARAL +DA + + D+ SA+D +
Sbjct: 461 EFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTES-ERAI 519
Query: 782 KEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDIL 828
+ L L ++KTV+ + H++ + AD ILV+ +G+I + G++ D+L
Sbjct: 520 QAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLL 566
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 122 bits (306), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/235 (33%), Positives = 126/235 (53%), Gaps = 18/235 (7%)
Query: 612 SSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK 671
S + A+E + +FA+ P +D +L + G A+ G GSGKS++LS +L
Sbjct: 337 SFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDP 396
Query: 672 ISGTLKLCGTK-------------AYVAQSPWIQSGNIEDNILFG----KPMDREKYDRV 714
SGT+ L G V+Q P + S +I +NI +G + E+ RV
Sbjct: 397 ASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRV 456
Query: 715 LEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDA 774
E + + G TV+GE+G+ LSGGQKQRI IARAL ++ I L D+ SA+DA
Sbjct: 457 AEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDA 516
Query: 775 HTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILN 829
+L +E L L+ +TV+ + H++ + A+++ V+ GKIT+ GK+ ++L+
Sbjct: 517 EN-EYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLS 570
Score = 120 bits (302), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 100/403 (24%), Positives = 181/403 (44%), Gaps = 22/403 (5%)
Query: 899 RELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAME 958
R+L+++ A Q E I T+R+F +E M ++ Y+ H+
Sbjct: 187 RKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKE-------MTEIEKYASKVDHVMQLAR 239
Query: 959 WLCF-RLDMLSSLTFAFSLVLLISIPKGVIEPAIAGLAVTYGLNLNMLQAWVIWNLCNLE 1017
F R + + +L++L + KG + A + V + M WV ++ L
Sbjct: 240 KEAFARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLS 299
Query: 1018 NKIISVERILQ-----YTCISSEPPLVIEESRPDCSWPTHGEVDILNLQVRYA--PHLPL 1070
+ + + L + + EP L E G ++ N+ Y P +P
Sbjct: 300 SFYSELMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVP- 358
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
+ + + + P G T +VG +GSGKST++ L R+ +P +G I +DG +I + LRS
Sbjct: 359 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRS 418
Query: 1131 RLSIIPQDPTMFEGTVRNNL-----DPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRV 1185
++ + Q+P +F ++ N+ DP EEI + +RN ++ V
Sbjct: 419 KIGTVSQEPILFSCSIAENIAYGADDP-SSVTAEEIQRVAEVANAVAFIRNFPQGFNTVV 477
Query: 1186 TENGENWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTATDNLIQQTLRQHFSDCTVIT 1245
E G S GQ+Q + + R DEAT+++D + L+Q+ L + TV+
Sbjct: 478 GEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLV 537
Query: 1246 IAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLV 1288
IAHR++++ +++MV +L G I EY +LL + + +L+
Sbjct: 538 IAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLM 580
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 108/199 (54%), Gaps = 2/199 (1%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
+LR ++ G +G GKST+ L R +PTAGEI IDG I +I L + RS
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRS 76
Query: 1131 RLSIIPQDPTMFEGTVRNNLD-PLE-EYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTEN 1188
++ + QD + GT+R NL LE +Y DE++W+ LD V N +L++ V E
Sbjct: 77 QIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGER 136
Query: 1189 GENWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTATDNLIQQTLRQHFSDCTVITIAH 1248
G S GQRQ + + R DEATAS+D+ +++++Q+ L T + IAH
Sbjct: 137 GVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAH 196
Query: 1249 RITSVIDSDMVLLLSHGII 1267
R+++++D+D + + G I
Sbjct: 197 RLSTIVDADKIYFIEKGQI 215
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 116/221 (52%), Gaps = 18/221 (8%)
Query: 623 NFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK 682
+FA+D S LRDI+ + +A G G GKS++ S + +G + + G
Sbjct: 8 DFAYDDSEQ--ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQP 65
Query: 683 -------------AYVAQSPWIQSGNIEDNILFGKPMDREKYD--RVLEACSLKKDLEIL 727
+V+Q I +G I +N+ +G D D +VL+ + +E +
Sbjct: 66 IDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENM 125
Query: 728 SFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLG 787
T +GERG+ +SGGQ+QR+ IARA ++ I + D+ +++D+ + S + ++ L
Sbjct: 126 PDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESES-MVQKALDS 184
Query: 788 LLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDIL 828
L++ +T + + H++ + AD I ++ G+IT +GK+N+++
Sbjct: 185 LMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELV 225
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/235 (33%), Positives = 125/235 (53%), Gaps = 18/235 (7%)
Query: 612 SSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK 671
S + A+E + +FA+ P +D +L + G A+ G GSGKS++LS +L
Sbjct: 368 SFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDP 427
Query: 672 ISGTLKLCGTK-------------AYVAQSPWIQSGNIEDNILFG----KPMDREKYDRV 714
SGT+ L G V+Q P + S +I +NI +G + E+ RV
Sbjct: 428 ASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRV 487
Query: 715 LEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDA 774
E + + G TV+GE+G+ LSGGQKQRI IARAL ++ I L D+ SA+DA
Sbjct: 488 AEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDA 547
Query: 775 HTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILN 829
+L +E L L+ +TV+ + H + + A+++ V+ GKIT+ GK+ ++L+
Sbjct: 548 EN-EYLVQEALDRLMDGRTVLVIAHHLSTIKNANMVAVLDQGKITEYGKHEELLS 601
Score = 118 bits (296), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/403 (24%), Positives = 180/403 (44%), Gaps = 22/403 (5%)
Query: 899 RELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLVDGYSRPKFHIAGAME 958
R+L+++ A Q E I T+R+F +E M ++ Y+ H+
Sbjct: 218 RKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKE-------MTEIEKYASKVDHVMQLAR 270
Query: 959 WLCF-RLDMLSSLTFAFSLVLLISIPKGVIEPAIAGLAVTYGLNLNMLQAWVIWNLCNLE 1017
F R + + +L++L + KG + A + V + M WV ++ L
Sbjct: 271 KEAFARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLS 330
Query: 1018 NKIISVERILQ-----YTCISSEPPLVIEESRPDCSWPTHGEVDILNLQVRYA--PHLPL 1070
+ + + L + + EP L E G ++ N+ Y P +P
Sbjct: 331 SFYSELMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVP- 389
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
+ + + + P G T +VG +GSGKST++ L R+ +P +G I +DG +I + LRS
Sbjct: 390 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRS 449
Query: 1131 RLSIIPQDPTMFEGTVRNNL-----DPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRV 1185
++ + Q+P +F ++ N+ DP EEI + +RN ++ V
Sbjct: 450 KIGTVSQEPILFSCSIAENIAYGADDP-SSVTAEEIQRVAEVANAVAFIRNFPQGFNTVV 508
Query: 1186 TENGENWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTATDNLIQQTLRQHFSDCTVIT 1245
E G S GQ+Q + + R DEAT+++D + L+Q+ L + TV+
Sbjct: 509 GEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLV 568
Query: 1246 IAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLV 1288
IAH ++++ +++MV +L G I EY +LL + + +L+
Sbjct: 569 IAHHLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLM 611
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 121 bits (304), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 125/237 (52%), Gaps = 3/237 (1%)
Query: 1053 GEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGE 1112
G+++ N+ Y LR + P G +VGR+GSGKST+ + R + G
Sbjct: 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH 399
Query: 1113 IVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLD--PLEEYKDEEIWEALDKCQL 1170
I++DG ++ L LR++++++ Q+ +F TV NN+ EEY E+I EA
Sbjct: 400 ILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYA 459
Query: 1171 GDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTATDNLI 1230
D + + LD+ + ENG S GQRQ + + R DEAT+++DT ++ I
Sbjct: 460 MDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 519
Query: 1231 QQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQL 1287
Q L + + T + IAHR++++ +D ++++ GII E + ++LL + +AQL
Sbjct: 520 QAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA-QHGVYAQL 575
Score = 101 bits (251), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 120/469 (25%), Positives = 214/469 (45%), Gaps = 55/469 (11%)
Query: 385 LTLSCQAKQSYTSGEIINFMTVDAERIGDFGWYMHDPW-----LVILQ--VSLALLILYK 437
+T + S +SG +I + A IG F + W LV+L VS+A+ ++ K
Sbjct: 128 ITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSK 187
Query: 438 NLGLASIAALFATVLIMLTNFPLGRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGW 497
SI+ + +T L+ + + + G ++ K ++ MR LQG
Sbjct: 188 RF--RSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMR---LQGM 242
Query: 498 EMKFLSKIIELRKIEAGWLKKFLYTGAMTSFVFWGAPTFVSVATFGACMLLGIPLESGKI 557
+M S I + + + + + A+ +FV + A +F SV L +G I
Sbjct: 243 KMVSASSI-------SDPIIQLIASLAL-AFVLYAA-SFPSVMD---------SLTAGTI 284
Query: 558 LSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLDDLQSDVVEKHPRGSSETAI 617
++ L P+ +L + + + + + F LD Q K + +
Sbjct: 285 TVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTL--FAILDSEQEKDEGKRVIDRATGDL 342
Query: 618 EIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCIL-------GEVP 670
E + F + P LR+INLK+ G VA+ G GSGKS++ S I G +
Sbjct: 343 EFRNVTFTYP-GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 401
Query: 671 KISGTLK------LCGTKAYVAQSPWIQSGNIEDNILFGKPMDREKYDR--VLEACSLKK 722
L+ L A V+Q+ + + + +NI + + E+Y R + EA +
Sbjct: 402 MDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYART---EEYSREQIEEAARMAY 458
Query: 723 DLEILSFGDQ---TVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSH 779
++ ++ D T+IGE G+ LSGGQ+QRI IARAL +D+ I + D+ SA+D +
Sbjct: 459 AMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES-ER 517
Query: 780 LFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDIL 828
+ L L +++T + + H++ + AD I+V++DG I + G ++++L
Sbjct: 518 AIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELL 566
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 120 bits (300), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 124/486 (25%), Positives = 224/486 (46%), Gaps = 59/486 (12%)
Query: 380 VYNKGLTLSCQAKQSYTSGEIINFMTVDAERIGDFGWY-MHDPWLVILQVSLALLILYKN 438
+YN LS + + G++I+ + D E+ DF + + WL + + +AL I++
Sbjct: 100 LYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL 159
Query: 439 LGLASIAALFATVLIMLTNFPL-GRLQENFQDKLMGSKDKRMKVTSEILRNMRILKLQGW 497
++AALF +LT + GRL+ K+T E R+ + ++QG+
Sbjct: 160 DVKLTLAALFIFPFYILTVYVFFGRLR---------------KLTRE--RSQALAEVQGF 202
Query: 498 EMKFLSKIIELRK--IEAGWLKKF------LYTGAMTSFVFWGAPTFVSVAT---FGACM 546
+ + I ++ IE K F T A+ W A +F ++ T G +
Sbjct: 203 LHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKH-TRWNAYSFAAINTVTDIGPII 261
Query: 547 LLGI--------PLESGKILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIASFLCLD 598
++G+ + G + + + +L P+ L + + + Q+ S+DR+ + D
Sbjct: 262 VIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDED 321
Query: 599 DLQSDVVEKHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGK 658
+ V P + I+I +F ++ + P L+DINL + G VA G G GK
Sbjct: 322 YDIKNGVGAQPIEIKQGRIDIDHVSFQYN-DNEAPILKDINLSIEKGETVAFVGMSGGGK 380
Query: 659 SSLLSCILGEVPKISGTLKLCGTK-------------AYVAQSPWIQSGNIEDNILFGKP 705
S+L++ I SG + + G V Q + S +++NIL G+P
Sbjct: 381 STLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRP 440
Query: 706 MDREKYDRVLEACSLKKDLEI---LSFGDQTVIGERGINLSGGQKQRIQIARALYQDADI 762
+ + V+EA + + L G T +GERG+ LSGGQKQR+ IAR + I
Sbjct: 441 TATD--EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPI 498
Query: 763 YLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAG 822
+ D+ SA+D + S + +E L L + +T + V H++ + AD I+V+++G I + G
Sbjct: 499 LILDEATSALDLESES-IIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETG 557
Query: 823 KYNDIL 828
+ +++
Sbjct: 558 THRELI 563
Score = 113 bits (282), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 120/232 (51%), Gaps = 1/232 (0%)
Query: 1052 HGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAG 1111
G +DI ++ +Y + +L+ + + G VG +G GKSTLI + R + T+G
Sbjct: 337 QGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSG 396
Query: 1112 EIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNN-LDPLEEYKDEEIWEALDKCQL 1170
+I+IDG NI LR+++ ++ QD +F TV+ N L DEE+ EA
Sbjct: 397 QILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANA 456
Query: 1171 GDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTATDNLI 1230
D + N D+ V E G S GQ+Q + + R DEAT+++D ++++I
Sbjct: 457 HDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESII 516
Query: 1231 QQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSS 1282
Q+ L D T + +AHR++++ +D ++++ +G I E + +L+ + +
Sbjct: 517 QEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGA 568
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
Length = 260
Score = 108 bits (269), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 111/209 (53%), Gaps = 2/209 (0%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
L+ + P G +VG TGSGKST+ + L+R + G+I I G N++ + +RS
Sbjct: 35 TLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRS 93
Query: 1131 RLSIIPQDPTMFEGTVRNN-LDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENG 1189
+ I+PQD +F T++ N L + DEE+ +A QL D + K D+ V G
Sbjct: 94 IIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKG 153
Query: 1190 ENWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTATDNLIQQTLRQHFSDCTVITIAHR 1249
S G+RQ + + R DEAT+S+D+ T+ L Q+ + + T+I IAHR
Sbjct: 154 MKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHR 213
Query: 1250 ITSVIDSDMVLLLSHGIIEEYDSPTKLLE 1278
++++ ++ ++LL+ G I E + LL+
Sbjct: 214 LSTISSAESIILLNKGKIVEKGTHKDLLK 242
Score = 106 bits (265), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 123/226 (54%), Gaps = 16/226 (7%)
Query: 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 676
IE D NF++ +N+ TL+ IN + G A+ G GSGKS++ + +L G +
Sbjct: 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTI-AKLLYRFYDAEGDI 76
Query: 677 KLCGTK-------------AYVAQSPWIQSGNIEDNILFGK-PMDREKYDRVLEACSLKK 722
K+ G V Q + + I+ NIL+GK E+ + ++ L
Sbjct: 77 KIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYD 136
Query: 723 DLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFK 782
+E L T++G +G+ LSGG++QRI IAR L +D I +FD+ S++D+ T +LF+
Sbjct: 137 FIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKT-EYLFQ 195
Query: 783 EVLLGLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDIL 828
+ + L +++T+I + H++ + +A+ I+++ GKI + G + D+L
Sbjct: 196 KAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLL 241
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 104 bits (259), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 119/226 (52%), Gaps = 2/226 (0%)
Query: 1053 GEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGE 1112
G ++ N+ YA L+ ++ T G +VG +G+GKST+++ LFR + ++G
Sbjct: 52 GRIEFENVHFSYADGRE-TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGC 110
Query: 1113 IVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLD-PLEEYKDEEIWEALDKCQLG 1171
I IDG +IS + LRS + ++PQD +F T+ +N+ ++E+ A +
Sbjct: 111 IRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIH 170
Query: 1172 DEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTATDNLIQ 1231
D + ++V E G S G++Q V + R DEAT+++DT+ + IQ
Sbjct: 171 DAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQ 230
Query: 1232 QTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLL 1277
+L + ++ T I +AHR+++V+++D +L++ G I E LL
Sbjct: 231 ASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALL 276
Score = 94.7 bits (234), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 113/223 (50%), Gaps = 15/223 (6%)
Query: 623 NFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-- 680
N + + TL+D++ V G +A+ G G+GKS++L + SG +++ G
Sbjct: 58 NVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQD 117
Query: 681 ----TKA-------YVAQSPWIQSGNIEDNILFGK-PMDREKYDRVLEACSLKKDLEILS 728
T+A V Q + + I DNI +G+ ++ + +A + +
Sbjct: 118 ISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFP 177
Query: 729 FGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL 788
G +T +GERG+ LSGG+KQR+ IAR + + I L D+ SA+D + + L +
Sbjct: 178 EGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDT-SNERAIQASLAKV 236
Query: 789 LRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSG 831
++T I V H++ + AD ILV+KDG I + G++ +L+ G
Sbjct: 237 CANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRG 279
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With
Tnp-Adp
Length = 243
Score = 104 bits (259), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 121/237 (51%), Gaps = 1/237 (0%)
Query: 1052 HGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAG 1111
H ++ N++ RY P P++L + + G GIVGR+GSGKSTL + + R P G
Sbjct: 1 HHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 60
Query: 1112 EIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEE-YKDEEIWEALDKCQL 1170
+++IDG +++ + LR ++ ++ QD + ++ +N+ E++ A
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 120
Query: 1171 GDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTATDNLI 1230
D + ++ V E G S GQRQ + + R DEAT+++D ++++I
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 1231 QQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQL 1287
+ + + TVI IAHR+++V ++D ++++ G I E +LL S ++ L
Sbjct: 181 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 237
Score = 99.0 bits (245), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 111/222 (50%), Gaps = 16/222 (7%)
Query: 623 NFAWDISSNNPTLRD-INLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT 681
N + ++P + D INL + G + + G GSGKS+L I +G + + G
Sbjct: 8 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 67
Query: 682 KAYVAQSPWIQ-------------SGNIEDNILFGKP-MDREKYDRVLEACSLKKDLEIL 727
+A W++ + +I DNI P M EK + + L
Sbjct: 68 DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL 127
Query: 728 SFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLG 787
G T++GE+G LSGGQ+QRI IARAL + I +FD+ SA+D + H+ +
Sbjct: 128 REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD-YESEHVIMRNMHK 186
Query: 788 LLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILN 829
+ + +TVI + H++ + AD I+VM+ GKI + GK+ ++L+
Sbjct: 187 ICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLS 228
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 103 bits (258), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 120/237 (50%), Gaps = 1/237 (0%)
Query: 1052 HGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAG 1111
H ++ N++ RY P P++L + + G GIVGR GSGKSTL + + R P G
Sbjct: 1 HHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENG 60
Query: 1112 EIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEE-YKDEEIWEALDKCQL 1170
+++IDG +++ + LR ++ ++ QD + ++ +N+ E++ A
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 120
Query: 1171 GDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTATDNLI 1230
D + ++ V E G S GQRQ + + R DEAT+++D ++++I
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 1231 QQTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQL 1287
+ + + TVI IAHR+++V ++D ++++ G I E +LL S ++ L
Sbjct: 181 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 237
Score = 99.8 bits (247), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 111/222 (50%), Gaps = 16/222 (7%)
Query: 623 NFAWDISSNNPTLRD-INLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT 681
N + ++P + D INL + G + + G GSGKS+L I +G + + G
Sbjct: 8 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVLIDGH 67
Query: 682 KAYVAQSPWIQ-------------SGNIEDNILFGKP-MDREKYDRVLEACSLKKDLEIL 727
+A W++ + +I DNI P M EK + + L
Sbjct: 68 DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL 127
Query: 728 SFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLG 787
G T++GE+G LSGGQ+QRI IARAL + I +FD+ SA+D + H+ +
Sbjct: 128 REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD-YESEHVIMRNMHK 186
Query: 788 LLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILN 829
+ + +TVI + H++ + AD I+VM+ GKI + GK+ ++L+
Sbjct: 187 ICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLS 228
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 118/230 (51%), Gaps = 1/230 (0%)
Query: 1059 NLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGI 1118
N++ RY P P++L + + G GIVGR+GSGKSTL + + R P G+++IDG
Sbjct: 6 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 65
Query: 1119 NISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEE-YKDEEIWEALDKCQLGDEVRNK 1177
+++ + LR ++ ++ QD + ++ +N+ E++ A D +
Sbjct: 66 DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL 125
Query: 1178 EGKLDSRVTENGENWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTATDNLIQQTLRQH 1237
++ V E G S GQRQ + + R DEAT+++D ++++I + + +
Sbjct: 126 REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI 185
Query: 1238 FSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQL 1287
TVI IAHR+++V ++D ++++ G I E +LL S ++ L
Sbjct: 186 CKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 235
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 111/222 (50%), Gaps = 16/222 (7%)
Query: 623 NFAWDISSNNPTLRD-INLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT 681
N + ++P + D INL + G + + G GSGKS+L I +G + + G
Sbjct: 6 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 65
Query: 682 KAYVAQSPWIQ-------------SGNIEDNILFGKP-MDREKYDRVLEACSLKKDLEIL 727
+A W++ + +I DNI P M EK + + L
Sbjct: 66 DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL 125
Query: 728 SFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLG 787
G T++GE+G LSGGQ+QRI IARAL + I +FD+ SA+D + H+ +
Sbjct: 126 REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD-YESEHVIMRNMHK 184
Query: 788 LLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILN 829
+ + +TVI + H++ + AD I+VM+ GKI + GK+ ++L+
Sbjct: 185 ICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLS 226
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound
State
Length = 247
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 118/230 (51%), Gaps = 1/230 (0%)
Query: 1059 NLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGI 1118
N++ RY P P++L + + G GIVGR+GSGKSTL + + R P G+++IDG
Sbjct: 12 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 71
Query: 1119 NISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEE-YKDEEIWEALDKCQLGDEVRNK 1177
+++ + LR ++ ++ QD + ++ +N+ E++ A D +
Sbjct: 72 DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL 131
Query: 1178 EGKLDSRVTENGENWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTATDNLIQQTLRQH 1237
++ V E G S GQRQ + + R DEAT+++D ++++I + + +
Sbjct: 132 REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI 191
Query: 1238 FSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQL 1287
TVI IAHR+++V ++D ++++ G I E +LL S ++ L
Sbjct: 192 CKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 111/222 (50%), Gaps = 16/222 (7%)
Query: 623 NFAWDISSNNPTLRD-INLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT 681
N + ++P + D INL + G + + G GSGKS+L I +G + + G
Sbjct: 12 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 71
Query: 682 KAYVAQSPWIQ-------------SGNIEDNILFGKP-MDREKYDRVLEACSLKKDLEIL 727
+A W++ + +I DNI P M EK + + L
Sbjct: 72 DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL 131
Query: 728 SFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLG 787
G T++GE+G LSGGQ+QRI IARAL + I +FD+ SA+D + H+ +
Sbjct: 132 REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD-YESEHVIMRNMHK 190
Query: 788 LLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILN 829
+ + +TVI + H++ + AD I+VM+ GKI + GK+ ++L+
Sbjct: 191 ICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLS 232
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 100 bits (250), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 118/230 (51%), Gaps = 1/230 (0%)
Query: 1059 NLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGI 1118
N++ RY P P++L + + G GIVGR+GSGKSTL + + R P G+++IDG
Sbjct: 12 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 71
Query: 1119 NISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEE-YKDEEIWEALDKCQLGDEVRNK 1177
+++ + LR ++ ++ QD + ++ +N+ E++ A D +
Sbjct: 72 DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL 131
Query: 1178 EGKLDSRVTENGENWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTATDNLIQQTLRQH 1237
++ V E G S GQRQ + + R D+AT+++D ++++I + + +
Sbjct: 132 REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKI 191
Query: 1238 FSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQL 1287
TVI IAHR+++V ++D ++++ G I E +LL S ++ L
Sbjct: 192 CKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241
Score = 98.2 bits (243), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 110/222 (49%), Gaps = 16/222 (7%)
Query: 623 NFAWDISSNNPTLRD-INLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT 681
N + ++P + D INL + G + + G GSGKS+L I +G + + G
Sbjct: 12 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 71
Query: 682 KAYVAQSPWIQ-------------SGNIEDNILFGKP-MDREKYDRVLEACSLKKDLEIL 727
+A W++ + +I DNI P M EK + + L
Sbjct: 72 DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL 131
Query: 728 SFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLG 787
G T++GE+G LSGGQ+QRI IARAL + I +FD SA+D + H+ +
Sbjct: 132 REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALD-YESEHVIMRNMHK 190
Query: 788 LLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILN 829
+ + +TVI + H++ + AD I+VM+ GKI + GK+ ++L+
Sbjct: 191 ICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLS 232
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 117/230 (50%), Gaps = 1/230 (0%)
Query: 1059 NLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGI 1118
N++ RY P P++L + + G GIVGR+GSGKSTL + + R P G+++IDG
Sbjct: 6 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 65
Query: 1119 NISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEE-YKDEEIWEALDKCQLGDEVRNK 1177
+++ + LR ++ ++ QD + ++ +N+ E++ A D +
Sbjct: 66 DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL 125
Query: 1178 EGKLDSRVTENGENWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTATDNLIQQTLRQH 1237
++ V E G S GQRQ + + R DEAT+++D ++++I + + +
Sbjct: 126 REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI 185
Query: 1238 FSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQL 1287
TVI IA R+++V ++D ++++ G I E +LL S ++ L
Sbjct: 186 CKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 235
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 110/222 (49%), Gaps = 16/222 (7%)
Query: 623 NFAWDISSNNPTLRD-INLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT 681
N + ++P + D INL + G + + G GSGKS+L I +G + + G
Sbjct: 6 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 65
Query: 682 KAYVAQSPWIQ-------------SGNIEDNILFGKP-MDREKYDRVLEACSLKKDLEIL 727
+A W++ + +I DNI P M EK + + L
Sbjct: 66 DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL 125
Query: 728 SFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLG 787
G T++GE+G LSGGQ+QRI IARAL + I +FD+ SA+D + H+ +
Sbjct: 126 REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD-YESEHVIMRNMHK 184
Query: 788 LLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILN 829
+ + +TVI + ++ + AD I+VM+ GKI + GK+ ++L+
Sbjct: 185 ICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLS 226
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter
Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 117/230 (50%), Gaps = 1/230 (0%)
Query: 1059 NLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGI 1118
N++ RY P P++L + + G GIVGR+GSGKSTL + + R P G+++IDG
Sbjct: 12 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 71
Query: 1119 NISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEE-YKDEEIWEALDKCQLGDEVRNK 1177
+++ + LR ++ ++ QD + ++ +N+ E++ A D +
Sbjct: 72 DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL 131
Query: 1178 EGKLDSRVTENGENWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTATDNLIQQTLRQH 1237
++ V E G S GQRQ + + R DEAT+++D ++++I + + +
Sbjct: 132 REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI 191
Query: 1238 FSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQL 1287
TVI IA R+++V ++D ++++ G I E +LL S ++ L
Sbjct: 192 CKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 110/222 (49%), Gaps = 16/222 (7%)
Query: 623 NFAWDISSNNPTLRD-INLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT 681
N + ++P + D INL + G + + G GSGKS+L I +G + + G
Sbjct: 12 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 71
Query: 682 KAYVAQSPWIQ-------------SGNIEDNILFGKP-MDREKYDRVLEACSLKKDLEIL 727
+A W++ + +I DNI P M EK + + L
Sbjct: 72 DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL 131
Query: 728 SFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLG 787
G T++GE+G LSGGQ+QRI IARAL + I +FD+ SA+D + H+ +
Sbjct: 132 REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD-YESEHVIMRNMHK 190
Query: 788 LLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILN 829
+ + +TVI + ++ + AD I+VM+ GKI + GK+ ++L+
Sbjct: 191 ICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLS 232
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 89.7 bits (221), Expect = 9e-18, Method: Composition-based stats.
Identities = 73/248 (29%), Positives = 120/248 (48%), Gaps = 9/248 (3%)
Query: 1050 PTHGEVDILNLQVRYA-PHLP--LVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIV 1106
P H E + V +A P+ P LVL+GLT T G T +VG GSGKST+ L +
Sbjct: 8 PLHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLY 67
Query: 1107 EPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNL--DPLEEYKDEEIWEA 1164
+PT G++++DG + L +++ + Q+P +F +++ N+ ++ EEI A
Sbjct: 68 QPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAA 127
Query: 1165 LDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDT 1224
K + D+ V E G S GQRQ V L R D+AT+++D
Sbjct: 128 AVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDA 187
Query: 1225 ATDNLIQQTLR---QHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKS 1281
+ ++Q L + +S +V+ I ++ V +D +L L G I E + +L+E K
Sbjct: 188 NSQLQVEQLLYESPERYSR-SVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKG 246
Query: 1282 SSFAQLVA 1289
+A + A
Sbjct: 247 CYWAMVQA 254
Score = 71.6 bits (174), Expect = 3e-12, Method: Composition-based stats.
Identities = 68/254 (26%), Positives = 114/254 (44%), Gaps = 30/254 (11%)
Query: 614 ETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKIS 673
E ++ D +FA+ + L+ + + G A+ G GSGKS++ + +
Sbjct: 12 EGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTG 71
Query: 674 GTLKLCGTK-------------AYVAQSPWIQSGNIEDNILFG---KPMDREKYDRVLEA 717
G L L G A V Q P + ++++NI +G KP E + A
Sbjct: 72 GQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEE-----ITA 126
Query: 718 CSLKKD----LEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVD 773
++K + L G T + E G LSGGQ+Q + +ARAL + + + DD SA+D
Sbjct: 127 AAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALD 186
Query: 774 AHTGSHLFKEVLL---GLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNS 830
A+ S L E LL S++V+ +T + + AD IL ++ G I + G + ++
Sbjct: 187 AN--SQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK 244
Query: 831 GTDFMVLVGAHQQA 844
+ +V A A
Sbjct: 245 KGCYWAMVQAPADA 258
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 87.4 bits (215), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 102/212 (48%), Gaps = 4/212 (1%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
VL+GLT T G T +VG GSGKST+ L + +PT G++++DG + H L +
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93
Query: 1131 RLSIIPQDPTMFEGTVRNNL--DPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTEN 1188
+++ + Q+P +F + R N+ EEI + D + D+ V E
Sbjct: 94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGET 153
Query: 1189 GENWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTATDNLIQQTLRQ--HFSDCTVITI 1246
G S GQRQ V L R D+AT+++D +Q+ L + ++ TV+ I
Sbjct: 154 GNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRTVLLI 213
Query: 1247 AHRITSVIDSDMVLLLSHGIIEEYDSPTKLLE 1278
H+++ + +L L G + E + +L+E
Sbjct: 214 THQLSLAERAHHILFLKEGSVCEQGTHLQLME 245
Score = 77.0 bits (188), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 111/242 (45%), Gaps = 24/242 (9%)
Query: 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 676
++ D +FA+ N L+ + ++ G A+ G GSGKS++ + + G +
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76
Query: 677 KLCGTK-------------AYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKD 723
L G A V Q P + + +NI +G + R + A +++
Sbjct: 77 LLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYG--LTRTPTMEEITAVAMESG 134
Query: 724 LE--ILSF--GDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSH 779
I F G T +GE G LSGGQ+Q + +ARAL + + + D SA+DA G+
Sbjct: 135 AHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDA--GNQ 192
Query: 780 LFKEVLL---GLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMV 836
L + LL S+TV+ +THQ+ A IL +K+G + + G + ++ G +
Sbjct: 193 LRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRS 252
Query: 837 LV 838
+V
Sbjct: 253 MV 254
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 84.0 bits (206), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 114/229 (49%), Gaps = 33/229 (14%)
Query: 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGT 675
IEI + W N +L +++LKV G + G G+GK+ L I G VP SG
Sbjct: 2 IEIESLSRKW----KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD-SGR 56
Query: 676 LKLCGTK-----------AYVAQS-PWIQSGNIEDNILFGKPMDREK-YDRVLEACSLKK 722
+ L G A+V Q+ N++ N+ FG M + K RVL+ +
Sbjct: 57 ILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTA---R 113
Query: 723 DLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFK 782
DL+I D+ + LSGG++QR+ +ARAL + I L D+P SA+D T + +
Sbjct: 114 DLKIEHLLDRN-----PLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENARE 168
Query: 783 EVLLGLLRSK---TVIYVTH-QVEFLPAADLILVMKDGKITQAGKYNDI 827
+L +L K TV+++TH Q E AD I V+ DGK+ Q GK +I
Sbjct: 169 --MLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI 215
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 93/206 (45%), Gaps = 31/206 (15%)
Query: 1087 IVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIG--LHDLRSRLSIIPQDPTMFEG 1144
I+G TG+GK+ ++ + P +G I++DG +++ + HD ++ + Q+ ++F
Sbjct: 31 ILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHD----IAFVYQNYSLFPH 86
Query: 1145 -TVRNNLD---PLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLV 1200
V+ NL+ +++ KD + LD ++ K++ + N S G++Q V
Sbjct: 87 MNVKKNLEFGMRMKKIKDPK--RVLDTA--------RDLKIEHLLDRNPLTLSGGEQQRV 136
Query: 1201 CLGRXXXXXXXXXXXDEATASVDTATDNLIQQTLRQHFS------DCTVITIAHRITSV- 1253
L R DE +++D T Q+ R+ S TV+ I H T
Sbjct: 137 ALARALVTNPKILLLDEPLSALDPRT----QENAREMLSVLHKKNKLTVLHITHDQTEAR 192
Query: 1254 IDSDMVLLLSHGIIEEYDSPTKLLEN 1279
I +D + ++ G + + P ++ E
Sbjct: 193 IMADRIAVVMDGKLIQVGKPEEIFEK 218
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 83.2 bits (204), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 101/212 (47%), Gaps = 4/212 (1%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
VL+GLT T G T +VG GSGKST+ L + +PT G++++DG + H L +
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93
Query: 1131 RLSIIPQDPTMFEGTVRNNL--DPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTEN 1188
+++ + Q+P +F + R N+ EEI + D + D+ V E
Sbjct: 94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGET 153
Query: 1189 GENWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTATDNLIQQTLRQ--HFSDCTVITI 1246
G ++GQRQ V L R D AT+++D +Q+ L + ++ TV+ I
Sbjct: 154 GNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLI 213
Query: 1247 AHRITSVIDSDMVLLLSHGIIEEYDSPTKLLE 1278
+++ + +L L G + E + +L+E
Sbjct: 214 TQQLSLAERAHHILFLKEGSVCEQGTHLQLME 245
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 110/242 (45%), Gaps = 24/242 (9%)
Query: 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 676
++ D +FA+ N L+ + ++ G A+ G GSGKS++ + + G +
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76
Query: 677 KLCGTK-------------AYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKD 723
L G A V Q P + + +NI +G + R + A +++
Sbjct: 77 LLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYG--LTRTPTMEEITAVAMESG 134
Query: 724 LE--ILSF--GDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSH 779
I F G T +GE G L+ GQ+Q + +ARAL + + + D+ SA+DA G+
Sbjct: 135 AHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDA--GNQ 192
Query: 780 LFKEVLL---GLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMV 836
L + LL S+TV+ +T Q+ A IL +K+G + + G + ++ G +
Sbjct: 193 LRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRS 252
Query: 837 LV 838
+V
Sbjct: 253 MV 254
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 100/212 (47%), Gaps = 4/212 (1%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
VL+GLT T G T +VG GSGKST+ L + +PT G++++DG + H L +
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93
Query: 1131 RLSIIPQDPTMFEGTVRNNL--DPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTEN 1188
+++ + Q+P +F + R N+ EEI + D + D+ V E
Sbjct: 94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGET 153
Query: 1189 GENWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTATDNLIQQTLRQ--HFSDCTVITI 1246
G S GQRQ V L R D AT+++D +Q+ L + ++ TV+ I
Sbjct: 154 GNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLI 213
Query: 1247 AHRITSVIDSDMVLLLSHGIIEEYDSPTKLLE 1278
+++ + +L L G + E + +L+E
Sbjct: 214 TQQLSLAERAHHILFLKEGSVCEQGTHLQLME 245
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 111/242 (45%), Gaps = 24/242 (9%)
Query: 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTL 676
++ D +FA+ N L+ + ++ G A+ G GSGKS++ + + G +
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76
Query: 677 KLCGTK-------------AYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKD 723
L G A V Q P + + +NI +G + R + A +++
Sbjct: 77 LLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYG--LTRTPTMEEITAVAMESG 134
Query: 724 LE--ILSF--GDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSH 779
I F G T +GE G LSGGQ+Q + +ARAL + + + D+ SA+DA G+
Sbjct: 135 AHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDA--GNQ 192
Query: 780 LFKEVLL---GLLRSKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMV 836
L + LL S+TV+ +T Q+ A IL +K+G + + G + ++ G +
Sbjct: 193 LRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRS 252
Query: 837 LV 838
+V
Sbjct: 253 MV 254
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 104/217 (47%), Gaps = 22/217 (10%)
Query: 636 RDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSG- 694
+DINL + G V G G GKS+LL I G SG L G K + +P + G
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL-FIGEK-RMNDTPPAERGV 77
Query: 695 -------------NIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGIN 741
++ +N+ FG + K + + + + + E+L ++ +
Sbjct: 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQ--RVNQVAEVLQLAH--LLDRKPKA 133
Query: 742 LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEV-LLGLLRSKTVIYVTH- 799
LSGGQ+QR+ I R L + ++L D+P S +DA + E+ L +T+IYVTH
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193
Query: 800 QVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMV 836
QVE + AD I+V+ G++ Q GK ++ + D V
Sbjct: 194 QVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFV 230
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 77.4 bits (189), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 104/217 (47%), Gaps = 22/217 (10%)
Query: 636 RDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSG- 694
+DINL + G V G G GKS+LL I G SG L G K + +P + G
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL-FIGEK-RMNDTPPAERGV 77
Query: 695 -------------NIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGIN 741
++ +N+ FG + K + + + + + E+L ++ +
Sbjct: 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQ--RVNQVAEVLQLAH--LLDRKPKA 133
Query: 742 LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEV-LLGLLRSKTVIYVTH- 799
LSGGQ+QR+ I R L + ++L D+P S +DA + E+ L +T+IYVTH
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193
Query: 800 QVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMV 836
QVE + AD I+V+ G++ Q GK ++ + D V
Sbjct: 194 QVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFV 230
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 76.6 bits (187), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 103/217 (47%), Gaps = 22/217 (10%)
Query: 636 RDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSG- 694
+DINL + G V G G GKS+LL I G SG L G K + +P + G
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL-FIGEK-RMNDTPPAERGV 77
Query: 695 -------------NIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGIN 741
++ +N+ FG + K + + + + + E+L ++ +
Sbjct: 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQ--RVNQVAEVLQLAH--LLDRKPKA 133
Query: 742 LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEV-LLGLLRSKTVIYVTH- 799
LSGGQ+QR+ I R L + ++L D P S +DA + E+ L +T+IYVTH
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193
Query: 800 QVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMV 836
QVE + AD I+V+ G++ Q GK ++ + D V
Sbjct: 194 QVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFV 230
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 75.1 bits (183), Expect = 2e-13, Method: Composition-based stats.
Identities = 73/222 (32%), Positives = 107/222 (48%), Gaps = 40/222 (18%)
Query: 631 NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSP- 689
N L +INLK+ G +A+ G GSGKS+LL I G SG K+ + V + P
Sbjct: 15 NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSG--KIYFDEKDVTELPP 72
Query: 690 -----------WI--QSGNIEDNILFGKPMD-----REKYDRVLEACSLKKDLEILSFGD 731
W + NI F P++ RE+ D+ + + K L I
Sbjct: 73 KDRNVGLVFQNWALYPHMTVYKNIAF--PLELRKAPREEIDKKVR--EVAKMLHI----- 123
Query: 732 QTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRS 791
++ LSGGQ+QR+ IARAL ++ ++ L D+P S +DA L EV L R
Sbjct: 124 DKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA----LLRLEVRAELKRL 179
Query: 792 K-----TVIYVTH-QVEFLPAADLILVMKDGKITQAGKYNDI 827
+ T +YVTH Q E L AD I V+++G+I Q G +++
Sbjct: 180 QKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEV 221
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 48/198 (24%), Positives = 91/198 (45%), Gaps = 16/198 (8%)
Query: 1086 GIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMF-EG 1144
++G +GSGKSTL+ T+ I +PT+G+I D +++ + D + ++ Q+ ++
Sbjct: 33 ALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKD--RNVGLVFQNWALYPHM 90
Query: 1145 TVRNNLD-PLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSM--GQRQLVC 1201
TV N+ PLE K E +DK +VR L N W + GQ+Q V
Sbjct: 91 TVYKNIAFPLELRKAPR--EEIDK-----KVREVAKMLHIDKLLNRYPWQLSGGQQQRVA 143
Query: 1202 LGRXXXXXXXXXXXDEATASVDTATDNLIQQTLR--QHFSDCTVITIAH-RITSVIDSDM 1258
+ R DE +++D ++ L+ Q T + + H + ++ +D
Sbjct: 144 IARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADR 203
Query: 1259 VLLLSHGIIEEYDSPTKL 1276
+ ++ G I + +P ++
Sbjct: 204 IAVIREGEILQVGTPDEV 221
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 103/212 (48%), Gaps = 19/212 (8%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKA----------Y 684
L+D+N + G V G GSGK++LL + G + +G + L G+ A Y
Sbjct: 27 LKDVNAEFETGKIYVVVGKNGSGKTTLLKILAG-LLAAAGEIFLDGSPADPFLLRKNVGY 85
Query: 685 VAQSPWIQ--SGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINL 742
V Q+P Q +E+++ F ++ D +KK LE++ G + +NL
Sbjct: 86 VFQNPSSQIIGATVEEDVAFS--LEIMGLDESEMRKRIKKVLELV--GLSGLAAADPLNL 141
Query: 743 SGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL-RSKTVIYVTHQV 801
SGGQKQR+ IA L +D D+P S +D + +F +VL L K +I VTH++
Sbjct: 142 SGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIF-QVLESLKNEGKGIILVTHEL 200
Query: 802 EFLPAADLILVMKDGKITQAGKYNDILNSGTD 833
E+L D IL + +G I G + + + D
Sbjct: 201 EYLDDMDFILHISNGTIDFCGSWEEFVEREFD 232
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 94/208 (45%), Gaps = 25/208 (12%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
VL+ + F G +VG+ GSGK+TL++ L ++ AGEI +DG S LR
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLL-AAAGEIFLDG---SPADPFLLRK 81
Query: 1131 RLSIIPQDPT--MFEGTVRNNLDPLEEYKDEEIWEALDKCQLGD-EVRNKEGKLDSRVTE 1187
+ + Q+P+ + TV +E++ +L+ L + E+R + K+ V
Sbjct: 82 NVGYVFQNPSSQIIGATV-----------EEDVAFSLEIMGLDESEMRKRIKKVLELVGL 130
Query: 1188 NG------ENWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTATDNLIQQTLRQHFSDC 1241
+G N S GQ+Q + + DE + +D + I Q L ++
Sbjct: 131 SGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEG 190
Query: 1242 T-VITIAHRITSVIDSDMVLLLSHGIIE 1268
+I + H + + D D +L +S+G I+
Sbjct: 191 KGIILVTHELEYLDDMDFILHISNGTID 218
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 69.7 bits (169), Expect = 9e-12, Method: Composition-based stats.
Identities = 67/222 (30%), Positives = 105/222 (47%), Gaps = 29/222 (13%)
Query: 634 TLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK----------- 682
++R ++ ++ G V + G GSGK+++L I G G + + G +
Sbjct: 30 SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNV 89
Query: 683 AYVAQS-PWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGIN 741
V Q+ Q + DN+ FG REK RV + + E+L F R +
Sbjct: 90 GLVFQNYALFQHMTVYDNVSFGL---REK--RVPKDEMDARVRELLRFMRLESYANRFPH 144
Query: 742 -LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVL-----LGLLRSKTVI 795
LSGGQ+QR+ +ARAL + LFD+PF+A+D L V +G+ T +
Sbjct: 145 ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGV----TSV 200
Query: 796 YVTH-QVEFLPAADLILVMKDGKITQAGKYNDILNS-GTDFM 835
+VTH Q E L AD +LV+ +G + Q G ++ GT F+
Sbjct: 201 FVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLFV 242
Score = 59.7 bits (143), Expect = 1e-08, Method: Composition-based stats.
Identities = 55/227 (24%), Positives = 108/227 (47%), Gaps = 17/227 (7%)
Query: 1072 LRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSR 1131
+RG++ G G++G +GSGK+T+++ + + PT G++ I G ++ L +
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTD--LPPQKRN 88
Query: 1132 LSIIPQDPTMFEG-TVRNNLD-PLEEYKDEEIWEALDKCQLGDEVRN--KEGKLDSRVTE 1187
+ ++ Q+ +F+ TV +N+ L E + + K ++ VR + +L+S
Sbjct: 89 VGLVFQNYALFQHMTVYDNVSFGLREKR-------VPKDEMDARVRELLRFMRLESYANR 141
Query: 1188 NGENWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTATDNLIQQTLRQHFSD--CTVIT 1245
S GQ+Q V L R DE A++DT ++ +RQ + T +
Sbjct: 142 FPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVF 201
Query: 1246 IAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKSSSF-AQLVAE 1290
+ H ++ +D VL+L G +E++ +P ++ E + F A + E
Sbjct: 202 VTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLFVASFIGE 248
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 109/230 (47%), Gaps = 39/230 (16%)
Query: 634 TLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTL----KLCGTKAYVAQS 688
L ++N+ + +G R + G G+GK++ + I G +VP +G L +L + +
Sbjct: 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS-TGELYFDDRLVASNGKLIVP 78
Query: 689 P-----------WIQSGNIE--DNILF---GKPMDREKYDRVLEACSLKKDLEILSFGDQ 732
P W N+ +NI F M +E+ + +E + K L+I
Sbjct: 79 PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVA--KILDI-----H 131
Query: 733 TVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAH---TGSHLFKEV--LLG 787
V+ LSGGQ+QR+ +ARAL +D + L D+PFS +DA + L KEV LG
Sbjct: 132 HVLNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLG 191
Query: 788 LLRSKTVIYVTHQ-VEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMV 836
+ T++ V+H + AD + V+ GK+ Q GK D+ ++ V
Sbjct: 192 V----TLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQV 237
Score = 37.0 bits (84), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 96/234 (41%), Gaps = 16/234 (6%)
Query: 1070 LVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLR 1129
+ L + G + GI+G +G+GK+T ++ + + P+ GE+ D ++S G
Sbjct: 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNG----- 73
Query: 1130 SRLSIIPQDPTM---FEG-TVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRV 1185
+L + P+D + F+ + NL E + K ++ V LD
Sbjct: 74 -KLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHH 132
Query: 1186 TEN--GENWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTATDNLIQQTLRQHFS--DC 1241
N S GQ+Q V L R DE +++D + + +++ S
Sbjct: 133 VLNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGV 192
Query: 1242 TVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKSS-SFAQLVAEYTQ 1293
T++ ++H + +D V +L G + + P L +N S A L+ E +
Sbjct: 193 TLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLIGEINE 246
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 67.0 bits (162), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 108/230 (46%), Gaps = 39/230 (16%)
Query: 634 TLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILG-EVPKISGTL----KLCGTKAYVAQS 688
L ++N+ + +G R + G G+GK++ + I G +VP +G L +L + +
Sbjct: 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS-TGELYFDDRLVASNGKLIVP 78
Query: 689 P-----------WIQSGNIE--DNILF---GKPMDREKYDRVLEACSLKKDLEILSFGDQ 732
P W N+ +NI F M +E+ + +E + K L+I
Sbjct: 79 PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVA--KILDI-----H 131
Query: 733 TVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAH---TGSHLFKEV--LLG 787
V+ LSG Q+QR+ +ARAL +D + L D+PFS +DA + L KEV LG
Sbjct: 132 HVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLG 191
Query: 788 LLRSKTVIYVTHQ-VEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMV 836
+ T++ V+H + AD + V+ GK+ Q GK D+ ++ V
Sbjct: 192 V----TLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQV 237
Score = 35.0 bits (79), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 95/234 (40%), Gaps = 16/234 (6%)
Query: 1070 LVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLR 1129
+ L + G + GI+G +G+GK+T ++ + + P+ GE+ D ++S G
Sbjct: 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNG----- 73
Query: 1130 SRLSIIPQDPTM---FEG-TVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRV 1185
+L + P+D + F+ + NL E + K ++ V LD
Sbjct: 74 -KLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHH 132
Query: 1186 TEN--GENWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTATDNLIQQTLRQHFS--DC 1241
N S Q+Q V L R DE +++D + + +++ S
Sbjct: 133 VLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGV 192
Query: 1242 TVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKSS-SFAQLVAEYTQ 1293
T++ ++H + +D V +L G + + P L +N S A L+ E +
Sbjct: 193 TLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLIGEINE 246
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 66.6 bits (161), Expect = 8e-11, Method: Composition-based stats.
Identities = 65/218 (29%), Positives = 103/218 (47%), Gaps = 39/218 (17%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK-ISGTLKLCGTK----------- 682
L+++NL + G V++ G GSGKS++L+ I+G + K G + + K
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLN-IIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79
Query: 683 ------AYVAQS----PWIQS-GNIEDNILF---GKPMDREKYDRVLEACSLKKDLEILS 728
+V Q P + + N+E ++F G E+ R LE C +LE
Sbjct: 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALE-CLKMAELE--- 135
Query: 729 FGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL 788
+ + LSGGQ+QR+ IARAL + I L D P A+D+ TG + + LL
Sbjct: 136 ---ERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQ--LLKK 190
Query: 789 LRS---KTVIYVTHQVEFLPAADLILVMKDGKITQAGK 823
L KTV+ VTH + + I+ +KDG++ + K
Sbjct: 191 LNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEK 228
Score = 50.4 bits (119), Expect = 6e-06, Method: Composition-based stats.
Identities = 58/217 (26%), Positives = 93/217 (42%), Gaps = 33/217 (15%)
Query: 1072 LRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSR 1131
L+ + G I+G +GSGKST++ + + +PT GE+ ID NI + L D
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYID--NIKTNDLDD--DE 76
Query: 1132 LSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQL-----------GDEVRN---- 1176
L+ I +D F + NL PL AL+ +L G+E R
Sbjct: 77 LTKIRRDKIGFVFQ-QFNLIPL--------LTALENVELPLIFKYRGAMSGEERRKRALE 127
Query: 1177 --KEGKLDSRVTENGEN-WSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTATDNLIQQT 1233
K +L+ R + N S GQ+Q V + R D+ T ++D+ T I Q
Sbjct: 128 CLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQL 187
Query: 1234 LRQHFSD--CTVITIAHRITSVIDSDMVLLLSHGIIE 1268
L++ + TV+ + H I + ++ L G +E
Sbjct: 188 LKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVE 224
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 110/229 (48%), Gaps = 25/229 (10%)
Query: 1072 LRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDL--- 1128
L ++ P G G++G +G+GKSTLI+ + + PT G +++DG ++++ +L
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 1129 RSRLSIIPQDPTMFEG-TVRNNLD-PLE---EYKDE---EIWEALDKCQLGDEVRNKEGK 1180
R ++ +I Q + TV N+ PLE KDE + E L LGD K
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD-------K 133
Query: 1181 LDSRVTENGENWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTATDNLIQQTLR--QHF 1238
DS + N S GQ+Q V + R DEAT+++D AT I + L+
Sbjct: 134 HDSYPS----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRR 189
Query: 1239 SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKSSSFAQ 1286
T++ I H + V D V ++S+G + E D+ +++ + + AQ
Sbjct: 190 LGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQ 238
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 104/217 (47%), Gaps = 29/217 (13%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCI-LGEVPKISGTLKLCG-----------TK 682
L +++L V G V G G+GKS+L+ C+ L E P G++ + G TK
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT-EGSVLVDGQELTTLSESELTK 79
Query: 683 AYVAQSPWIQSGNI-EDNILFGK---PMDREKYDRVLEACSLKKDLEILSFGDQTVIGER 738
A Q N+ +FG P++ + + + + L ++ GD+
Sbjct: 80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH--DSY 137
Query: 739 GINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGS---HLFKEV--LLGLLRSKT 793
NLSGGQKQR+ IARAL + + L D+ SA+D T L K++ LGL T
Sbjct: 138 PSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGL----T 193
Query: 794 VIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDILN 829
++ +TH+++ + D + V+ +G++ + +++ +
Sbjct: 194 ILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 66.6 bits (161), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 95/184 (51%), Gaps = 10/184 (5%)
Query: 623 NFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK 682
N + + N + +N + G +AV G G GKS+LL +LG I G +++ +
Sbjct: 9 NLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSI 68
Query: 683 AYVAQ---SPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERG 739
+V Q SP+ S + D +L G+ + + ++ + ++ L + + T + +R
Sbjct: 69 GFVPQFFSSPFAYS--VLDIVLMGRSTHINTFAKP-KSHDYQVAMQALDYLNLTHLAKRE 125
Query: 740 I-NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSK--TVIY 796
+LSGGQ+Q I IARA+ + + L D+P SA+D + +L+ L +S+ TV++
Sbjct: 126 FTSLSGGQRQLILIARAIASECKLILLDEPTSALDL-ANQDIVLSLLIDLAQSQNMTVVF 184
Query: 797 VTHQ 800
THQ
Sbjct: 185 TTHQ 188
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 65.9 bits (159), Expect = 1e-10, Method: Composition-based stats.
Identities = 65/218 (29%), Positives = 103/218 (47%), Gaps = 39/218 (17%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPK-ISGTLKLCGTK----------- 682
L+++NL + G V++ G GSGKS+ L+ I+G + K G + + K
Sbjct: 21 LKNVNLNIKEGEFVSIXGPSGSGKSTXLN-IIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79
Query: 683 ------AYVAQS----PWIQS-GNIEDNILF---GKPMDREKYDRVLEACSLKKDLEILS 728
+V Q P + + N+E ++F G E+ R LE C +LE
Sbjct: 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALE-CLKXAELE--- 135
Query: 729 FGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL 788
+ + LSGGQ+QR+ IARAL + I L D+P A+D+ TG + + LL
Sbjct: 136 ---ERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQ--LLKK 190
Query: 789 LRS---KTVIYVTHQVEFLPAADLILVMKDGKITQAGK 823
L KTV+ VTH + + I+ +KDG++ + K
Sbjct: 191 LNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEK 228
Score = 50.4 bits (119), Expect = 7e-06, Method: Composition-based stats.
Identities = 59/217 (27%), Positives = 91/217 (41%), Gaps = 33/217 (15%)
Query: 1072 LRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSR 1131
L+ + G I G +GSGKST + + + +PT GE+ ID NI + L D
Sbjct: 21 LKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYID--NIKTNDLDD--DE 76
Query: 1132 LSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQL-----------GDEVRN---- 1176
L+ I +D F + NL PL AL+ +L G+E R
Sbjct: 77 LTKIRRDKIGFVFQ-QFNLIPL--------LTALENVELPLIFKYRGAXSGEERRKRALE 127
Query: 1177 --KEGKLDSRVTENGEN-WSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTATDNLIQQT 1233
K +L+ R + N S GQ+Q V + R DE T ++D+ T I Q
Sbjct: 128 CLKXAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQL 187
Query: 1234 LRQHFSD--CTVITIAHRITSVIDSDMVLLLSHGIIE 1268
L++ + TV+ + H I + ++ L G +E
Sbjct: 188 LKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVE 224
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 65.9 bits (159), Expect = 2e-10, Method: Composition-based stats.
Identities = 70/258 (27%), Positives = 114/258 (44%), Gaps = 31/258 (12%)
Query: 616 AIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGT 675
+ +VD W + +R+++L+V G + + G G GK++ L I G G
Sbjct: 3 GVRLVD---VWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ 59
Query: 676 LKLCGTK------------------AYVAQSPWIQSG-NIEDNILFGKPMDREKYDRVLE 716
+ + G K A V QS + + DNI F P+ K R
Sbjct: 60 IYI-GDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAF--PLKLRKVPRQEI 116
Query: 717 ACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHT 776
+++ E+L G ++ + LSGGQ+QR+ + RA+ + ++L D+P S +DA
Sbjct: 117 DQRVREVAELL--GLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKL 174
Query: 777 GSHLFKEVLLGLLRS--KTVIYVTH-QVEFLPAADLILVMKDGKITQAGKYNDILNSGTD 833
+ E L L R T IYVTH QVE + D I VM G + Q G +++ + +
Sbjct: 175 RVRMRAE-LKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPAN 233
Query: 834 FMVLVGAHQQALSALDSI 851
V ++ LD+I
Sbjct: 234 TFVAGFIGSPPMNFLDAI 251
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 47/218 (21%), Positives = 98/218 (44%), Gaps = 36/218 (16%)
Query: 1087 IVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQD---PTMFE 1143
++G +G GK+T ++ + + EP+ G+I I ++ D + + P+D +F+
Sbjct: 34 LLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVA-----DPEKGIFVPPKDRDIAMVFQ 88
Query: 1144 G-------TVRNNLD-PLEEYK------DEEIWEALDKCQLGDEVRNKEGKLDSRVTENG 1189
TV +N+ PL+ K D+ + E + L + + K +L
Sbjct: 89 SYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPREL-------- 140
Query: 1190 ENWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTATDNLIQQTLR--QHFSDCTVITIA 1247
S GQRQ V LGR DE +++D ++ L+ Q T I +
Sbjct: 141 ---SGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVT 197
Query: 1248 H-RITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSF 1284
H ++ ++ D + +++ G++++ SP ++ + +++F
Sbjct: 198 HDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTF 235
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 99/218 (45%), Gaps = 37/218 (16%)
Query: 634 TLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK----------- 682
L+++NL + G V++ G GSGKS++L+ I G + + K
Sbjct: 20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79
Query: 683 ------AYVAQS----PWIQS-GNIEDNILF---GKPMDREKYDRVLEACSLKKDLEILS 728
+V Q P + + N+E ++F G E+ R LE C +LE
Sbjct: 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALE-CLKMAELE--- 135
Query: 729 FGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGL 788
+ + LSGGQ+QR+ IARAL + I L D P A+D+ TG + + LL
Sbjct: 136 ---ERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQ--LLKK 190
Query: 789 LRS---KTVIYVTHQVEFLPAADLILVMKDGKITQAGK 823
L KTV+ VTH + + I+ +KDG++ + K
Sbjct: 191 LNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEK 228
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 93/218 (42%), Gaps = 33/218 (15%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
L+ + G I+G +GSGKST++ + + +PT GE+ ID NI + L D
Sbjct: 20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYID--NIKTNDLDD--D 75
Query: 1131 RLSIIPQDPTMFEGTVRNNLDPLEEYKDEEIWEALDKCQL-----------GDEVRN--- 1176
L+ I +D F + NL PL AL+ +L G+E R
Sbjct: 76 ELTKIRRDKIGFVFQ-QFNLIPL--------LTALENVELPLIFKYRGAMSGEERRKRAL 126
Query: 1177 ---KEGKLDSRVTENGENW-SMGQRQLVCLGRXXXXXXXXXXXDEATASVDTATDNLIQQ 1232
K +L+ R + N S GQ+Q V + R D+ T ++D+ T I Q
Sbjct: 127 ECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQ 186
Query: 1233 TLRQHFSD--CTVITIAHRITSVIDSDMVLLLSHGIIE 1268
L++ + TV+ + H I + ++ L G +E
Sbjct: 187 LLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVE 224
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 65.5 bits (158), Expect = 2e-10, Method: Composition-based stats.
Identities = 65/230 (28%), Positives = 106/230 (46%), Gaps = 38/230 (16%)
Query: 631 NNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPW 690
N P L DI+L + G + + G G GK++LL C+ G SG + L G + +
Sbjct: 16 NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNL 75
Query: 691 ----------IQSG------NIEDNILFG-------KPMDREKYDRVLEACSLKKDLEIL 727
+Q G + NI +G +R++ + +LE + +
Sbjct: 76 PVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISE----- 130
Query: 728 SFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLG 787
+ G LSGGQ+QR +ARAL D ++ L D+PFSA+D + +E ++
Sbjct: 131 ------LAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQI-REDMIA 183
Query: 788 LLRS--KTVIYVTH-QVEFLPAADLILVMKDGKITQAGKYNDILNSGTDF 834
LR+ K+ ++V+H + E L AD I VMK G+I Q +++ D
Sbjct: 184 ALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQPADL 233
Score = 34.3 bits (77), Expect = 0.43, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISS--IGLHDL 1128
VL ++ + G I+G +G GK+TL++ L +P +GEI + G I S L
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVR 78
Query: 1129 RSRLSIIPQDPTMF 1142
RL + Q+ +F
Sbjct: 79 ERRLGYLVQEGVLF 92
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 110/229 (48%), Gaps = 25/229 (10%)
Query: 1072 LRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDL--- 1128
L ++ P G G++G +G+GKSTLI+ + + PT G +++DG ++++ +L
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 1129 RSRLSIIPQDPTMFEG-TVRNNLD-PLE---EYKDE---EIWEALDKCQLGDEVRNKEGK 1180
R ++ +I Q + TV N+ PLE KDE + E L LGD K
Sbjct: 104 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD-------K 156
Query: 1181 LDSRVTENGENWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTATDNLIQQTLR--QHF 1238
DS + N S GQ+Q V + R D+AT+++D AT I + L+
Sbjct: 157 HDSYPS----NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRR 212
Query: 1239 SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKSSSFAQ 1286
T++ I H + V D V ++S+G + E D+ +++ + + AQ
Sbjct: 213 LGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQ 261
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 103/217 (47%), Gaps = 29/217 (13%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCI-LGEVPKISGTLKLCG-----------TK 682
L +++L V G V G G+GKS+L+ C+ L E P G++ + G TK
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-TEGSVLVDGQELTTLSESELTK 102
Query: 683 AYVAQSPWIQSGNI-EDNILFGK---PMDREKYDRVLEACSLKKDLEILSFGDQTVIGER 738
A Q N+ +FG P++ + + + + L ++ GD+
Sbjct: 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH--DSY 160
Query: 739 GINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGS---HLFKEV--LLGLLRSKT 793
NLSGGQKQR+ IARAL + + L D SA+D T L K++ LGL T
Sbjct: 161 PSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGL----T 216
Query: 794 VIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDILN 829
++ +TH+++ + D + V+ +G++ + +++ +
Sbjct: 217 ILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 253
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 102/238 (42%), Gaps = 22/238 (9%)
Query: 609 PRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCI--- 665
PRGS ++++D + + L+ IN+ + G V V G GSGKS+ L C+
Sbjct: 16 PRGSH--MLQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLL 73
Query: 666 ----LGEVPKISGTLKLCGT---KAYVAQSPWIQSGN------IEDNILFGKPMDREKYD 712
GE+ LK T K Q N + +NI PM K+
Sbjct: 74 EDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLA-PMKVRKWP 132
Query: 713 RVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAV 772
R + L+ + D+ +LSGGQ QR+ IARAL + I LFD+P SA+
Sbjct: 133 REKAEAKAMELLDKVGLKDKA--HAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSAL 190
Query: 773 DAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFL-PAADLILVMKDGKITQAGKYNDILN 829
D + + T++ VTH++ F D +L M G I + GK D+ +
Sbjct: 191 DPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 248
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 98/221 (44%), Gaps = 24/221 (10%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISS--IGLHDL 1128
VL+G+ G ++G +GSGKST ++ L + + GEI+IDGIN+ + L+ +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 1129 RSRLSIIPQDPTMFEG-TVRNN--LDPLE------EYKDEEIWEALDKCQLGDEVRNKEG 1179
R + ++ Q +F TV NN L P++ E + + E LDK L D+
Sbjct: 99 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPD 158
Query: 1180 KLDSRVTENGENWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTATDNLIQQTLRQHFS 1239
L S GQ Q V + R DE T+++D + ++Q +
Sbjct: 159 SL-----------SGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN 207
Query: 1240 D-CTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLE 1278
+ T++ + H + + D VL + G I E P L +
Sbjct: 208 EGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 248
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 91/213 (42%), Gaps = 20/213 (9%)
Query: 634 TLRDINLKVFHGMRVAVCGTVGSGKSSLLSCI-------LGEVPKISGTLKLCGT---KA 683
L+ IN+ + G V V G GSGKS+ L C+ GE+ LK T K
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 77
Query: 684 YVAQSPWIQSGN------IEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGE 737
Q N + +NI PM K+ R + L+ + D+
Sbjct: 78 REEVGMVFQRFNLFPHMTVLNNITLA-PMKVRKWPREKAEAKAMELLDKVGLKDKA--HA 134
Query: 738 RGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYV 797
+LSGGQ QR+ IARAL + I LFD+P SA+D + + T++ V
Sbjct: 135 YPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVV 194
Query: 798 THQVEFL-PAADLILVMKDGKITQAGKYNDILN 829
TH++ F D +L M G I + GK D+ +
Sbjct: 195 THEMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 227
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 99/221 (44%), Gaps = 24/221 (10%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISS--IGLHDL 1128
VL+G+ G ++G +GSGKST ++ L + + GEI+IDGIN+ + L+ +
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 77
Query: 1129 RSRLSIIPQDPTMFEG-TVRNN--LDPLE------EYKDEEIWEALDKCQLGDEVRNKEG 1179
R + ++ Q +F TV NN L P++ E + + E LDK L D
Sbjct: 78 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKD------- 130
Query: 1180 KLDSRVTENGENWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTATDNLIQQTLRQHFS 1239
+ ++ S GQ Q V + R DE T+++D + ++Q +
Sbjct: 131 ----KAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN 186
Query: 1240 D-CTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLE 1278
+ T++ + H + + D VL + G I E P L +
Sbjct: 187 EGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 227
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 108/229 (47%), Gaps = 25/229 (10%)
Query: 1072 LRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDL--- 1128
L ++ P G G++G +G+GKSTLI+ + + PT G +++DG ++++ +L
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 1129 RSRLSIIPQDPTMFEG-TVRNNLD-PLE---EYKDE---EIWEALDKCQLGDEVRNKEGK 1180
R ++ I Q + TV N+ PLE KDE + E L LGD K
Sbjct: 104 RRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD-------K 156
Query: 1181 LDSRVTENGENWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTATDNLIQQTLR--QHF 1238
DS + N S GQ+Q V + R D+AT+++D AT I + L+
Sbjct: 157 HDSYPS----NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRR 212
Query: 1239 SDCTVITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKSSSFAQ 1286
T++ I H V D V ++S+G + E D+ +++ + + AQ
Sbjct: 213 LGLTILLITHEXDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQ 261
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 102/217 (47%), Gaps = 29/217 (13%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCI-LGEVPKISGTLKLCG-----------TK 682
L +++L V G V G G+GKS+L+ C+ L E P G++ + G TK
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-TEGSVLVDGQELTTLSESELTK 102
Query: 683 AYVAQSPWIQSGNI-EDNILFGK---PMDREKYDRVLEACSLKKDLEILSFGDQTVIGER 738
A Q N+ +FG P++ + + + + L ++ GD+
Sbjct: 103 ARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH--DSY 160
Query: 739 GINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGS---HLFKEV--LLGLLRSKT 793
NLSGGQKQR+ IARAL + + L D SA+D T L K++ LGL T
Sbjct: 161 PSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGL----T 216
Query: 794 VIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDILN 829
++ +TH+ + + D + V+ +G++ + +++ +
Sbjct: 217 ILLITHEXDVVKRICDCVAVISNGELIEQDTVSEVFS 253
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 102/240 (42%), Gaps = 47/240 (19%)
Query: 633 PTLRDINLKVFHGMR---------------VAVCGTVGSGKSSLLSCILGEVPKISGTLK 677
P++R +NLK + G VA+ G G GK++ L + G SG +
Sbjct: 2 PSIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIY 61
Query: 678 LCGTKAYVAQSPWIQSG------------NIEDNILFGKPMDREKYDRVLE-ACSLKKDL 724
+ + G + +NI F R D V + + + L
Sbjct: 62 FDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKL 121
Query: 725 EILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTG------- 777
I + D+ + LSGGQ+QR+ +ARAL + + LFD+P S +DA+
Sbjct: 122 LIDNLLDR-----KPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEI 176
Query: 778 SHLFKEVLLGLLRSKTVIYVTH-QVEFLPAADLILVMKDGKITQAGKYNDILNSGTDFMV 836
HL +E LG+ T +YVTH Q E + A I V GK+ Q G +++ +S + V
Sbjct: 177 KHLQQE--LGI----TSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNMFV 230
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 44/218 (20%), Positives = 94/218 (43%), Gaps = 16/218 (7%)
Query: 1074 GLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLS 1133
G++ G ++G +G GK+T + L I +PT+GEI D + ++ I +
Sbjct: 21 GVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREVG 78
Query: 1134 IIPQDPTMFEG-TVRNNLD-PLEEYKDEEIWEALDKCQLGDEVRNKEGKL--DSRVTENG 1189
++ Q+ ++ TV N+ PL + + K ++ V KL D+ +
Sbjct: 79 MVFQNYALYPHMTVFENIAFPLRARR-------ISKDEVEKRVVEIARKLLIDNLLDRKP 131
Query: 1190 ENWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTATDNLIQ---QTLRQHFSDCTVITI 1246
S GQ+Q V L R DE +++D +++ + L+Q +V
Sbjct: 132 TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVT 191
Query: 1247 AHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSF 1284
+ ++ + + + + G + +Y +P ++ ++ + F
Sbjct: 192 HDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNMF 229
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 90/200 (45%), Gaps = 22/200 (11%)
Query: 634 TLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQS 693
L +++L + G + V G GSGKS+LL + G + SG + G + + +
Sbjct: 22 ALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGER----KKGYEIR 77
Query: 694 GNIEDNILFGKPMDREKYDRVLEACS---------------LKKDLEILSFGDQTVIGER 738
NI I F P D+ +RV + + +KK +E + +
Sbjct: 78 RNI--GIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRV 135
Query: 739 GINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVT 798
LSGG+K+R+ IA + + DI + D+P +D + L + V KTVI ++
Sbjct: 136 PFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILIS 195
Query: 799 HQVE-FLPAADLILVMKDGK 817
H +E + D ++V++ GK
Sbjct: 196 HDIETVINHVDRVVVLEKGK 215
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 25/31 (80%)
Query: 1087 IVGRTGSGKSTLIQTLFRIVEPTAGEIVIDG 1117
+ G TGSGKSTL+Q + ++EPT+G+++ DG
Sbjct: 38 VAGNTGSGKSTLLQIVAGLIEPTSGDVLYDG 68
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 90/200 (45%), Gaps = 22/200 (11%)
Query: 634 TLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQS 693
L +++L + G + V G GSGKS+LL + G + SG + G + + +
Sbjct: 24 ALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGER----KKGYEIR 79
Query: 694 GNIEDNILFGKPMDREKYDRVLEACS---------------LKKDLEILSFGDQTVIGER 738
NI I F P D+ +RV + + +KK +E + +
Sbjct: 80 RNI--GIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRV 137
Query: 739 GINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVT 798
LSGG+K+R+ IA + + DI + D+P +D + L + V KTVI ++
Sbjct: 138 PFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILIS 197
Query: 799 HQVE-FLPAADLILVMKDGK 817
H +E + D ++V++ GK
Sbjct: 198 HDIETVINHVDRVVVLEKGK 217
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 1053 GEVDILNLQVRYAPHLPL---VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPT 1109
G ++++N+ + PL L ++ G + G TGSGKSTL+Q + ++EPT
Sbjct: 3 GRIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT 62
Query: 1110 AGEIVIDG 1117
+G+++ DG
Sbjct: 63 SGDVLYDG 70
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 52/91 (57%), Gaps = 6/91 (6%)
Query: 741 NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSK---TVIYV 797
LSGGQ+QR+ +ARA+ + D+ L D+P S +DA + E+ L+ K T IYV
Sbjct: 142 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEI--KKLQQKLKVTTIYV 199
Query: 798 TH-QVEFLPAADLILVMKDGKITQAGKYNDI 827
TH QVE + D I VM G++ Q G ++
Sbjct: 200 THDQVEAMTMGDRIAVMNRGQLLQIGSPTEV 230
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 102/245 (41%), Gaps = 32/245 (13%)
Query: 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEI 1113
EV + NL R+ + L T G ++G +G GK+T ++ + + EPT G I
Sbjct: 12 EVKLENLTKRFGNFT--AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 69
Query: 1114 VIDGINISSIGLHDLRSRLSIIPQD----PTMFEGTVRNNLD-PLEEYK------DEEIW 1162
+++ + D +S++ Q P M TV N+ PL+ K D+ +
Sbjct: 70 YFGDRDVTYLPPKD--RNISMVFQSYAVWPHM---TVYENIAFPLKIKKFPKDEIDKRVR 124
Query: 1163 EALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRXXXXXXXXXXXDEATASV 1222
A + Q+ + + +L S GQRQ V + R DE +++
Sbjct: 125 WAAELLQIEELLNRYPAQL-----------SGGQRQRVAVARAIVVEPDVLLMDEPLSNL 173
Query: 1223 DTATDNLIQ---QTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLEN 1279
D ++ + L+Q T+ ++ ++ D + +++ G + + SPT++
Sbjct: 174 DAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 233
Query: 1280 KSSSF 1284
+S F
Sbjct: 234 PNSVF 238
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 52/91 (57%), Gaps = 6/91 (6%)
Query: 741 NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSK---TVIYV 797
LSGGQ+QR+ +ARA+ + D+ L D+P S +DA + E+ L+ K T IYV
Sbjct: 141 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEI--KKLQQKLKVTTIYV 198
Query: 798 TH-QVEFLPAADLILVMKDGKITQAGKYNDI 827
TH QVE + D I VM G++ Q G ++
Sbjct: 199 THDQVEAMTMGDRIAVMNRGQLLQIGSPTEV 229
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 102/245 (41%), Gaps = 32/245 (13%)
Query: 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEI 1113
EV + NL R+ + L T G ++G +G GK+T ++ + + EPT G I
Sbjct: 11 EVKLENLTKRFGNFT--AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 68
Query: 1114 VIDGINISSIGLHDLRSRLSIIPQD----PTMFEGTVRNNLD-PLEEYK------DEEIW 1162
+++ + D +S++ Q P M TV N+ PL+ K D+ +
Sbjct: 69 YFGDRDVTYLPPKD--RNISMVFQSYAVWPHM---TVYENIAFPLKIKKFPKDEIDKRVR 123
Query: 1163 EALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRXXXXXXXXXXXDEATASV 1222
A + Q+ + + +L S GQRQ V + R DE +++
Sbjct: 124 WAAELLQIEELLNRYPAQL-----------SGGQRQRVAVARAIVVEPDVLLMDEPLSNL 172
Query: 1223 DTATDNLIQ---QTLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLEN 1279
D ++ + L+Q T+ ++ ++ D + +++ G + + SPT++
Sbjct: 173 DAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 232
Query: 1280 KSSSF 1284
+S F
Sbjct: 233 PNSVF 237
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 731 DQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLR 790
D+ G+ ++LSGGQ+QR+ IARAL + D+ LFD+P SA+D + + +
Sbjct: 143 DERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE 202
Query: 791 SKTVIYVTHQVEFL-PAADLILVMKDGKITQAG 822
KT++ VTH++ F + ++ + GKI + G
Sbjct: 203 GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 235
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 116/261 (44%), Gaps = 38/261 (14%)
Query: 1051 THGEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTA 1110
+ ++ +++L RY H VL+G++ G I+G +GSGKST ++ + + +P+
Sbjct: 3 SENKLHVIDLHKRYGGHE--VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSE 60
Query: 1111 GEIVIDGINISSIGLHD-------------LRSRLSIIPQ------DPTMFEGTVRNNLD 1151
G I+++G NI+ + D LR+RL+++ Q T+ E + +
Sbjct: 61 GAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQ 120
Query: 1152 PLEEYKDEEIWEALDK-CQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRXXXXXX 1210
L K + AL ++G + R +GK + S GQ+Q V + R
Sbjct: 121 VLGLSKHDARERALKYLAKVGIDER-AQGKYPV-------HLSGGQQQRVSIARALAMEP 172
Query: 1211 XXXXXDEATASVDTATDNLIQQTLR--QHFSD--CTVITIAHRITSVID-SDMVLLLSHG 1265
DE T+++D L+ + LR Q ++ T++ + H + S V+ L G
Sbjct: 173 DVLLFDEPTSALDP---ELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQG 229
Query: 1266 IIEEYDSPTKLLENKSSSFAQ 1286
IEE P ++ N S Q
Sbjct: 230 KIEEEGDPEQVFGNPQSPRLQ 250
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 59.7 bits (143), Expect = 1e-08, Method: Composition-based stats.
Identities = 65/230 (28%), Positives = 101/230 (43%), Gaps = 48/230 (20%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-------------T 681
+ D++L + G VA+ G G+GKS+LL + G + G L G T
Sbjct: 27 INDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALART 86
Query: 682 KAYVAQ----------SPWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGD 731
+A + Q S IQ G +G DR+ +V+ + D L+ D
Sbjct: 87 RAVMRQYSELAFPFSVSEVIQMGRAP----YGGSQDRQALQQVMA----QTDCLALAQRD 138
Query: 732 QTVIGERGINLSGGQKQRIQIARALY-----QDADIYLF-DDPFSAVDAHTGSHLFKEVL 785
V LSGG++QR+Q+AR L Q +LF D+P SA+D + H + +L
Sbjct: 139 YRV-------LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLR-LL 190
Query: 786 LGLLRSK--TVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDILNSGT 832
L R + V V H + AD I+++ GK+ G ++LN+ T
Sbjct: 191 RQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLNAET 240
Score = 32.7 bits (73), Expect = 1.4, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 1082 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISS 1122
G I+G G+GKSTL++ L + P+ GE + G N++S
Sbjct: 37 GEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNS 77
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 57.0 bits (136), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 101/218 (46%), Gaps = 23/218 (10%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK----AYVAQSPW 690
L+ I+ ++ G + + G G+GK++LL+ + P SGT+ L G Y A++
Sbjct: 37 LKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSAETVR 96
Query: 691 IQSGNIEDNILFGKPMDREKYDRVLEACSLKK-------DLEILSFGDQ--TVIGERGIN 741
G + ++L K + E+ V+ + + K D EI + Q ++G
Sbjct: 97 QHIGFVSHSLL-EKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGXSAKA 155
Query: 742 ------LSGGQKQRIQIARALYQDADIYLFDDPFSAVD--AHTGSHLFKEVLLGLLRSKT 793
LS G+KQR+ IARAL + + D+P + +D A + L +
Sbjct: 156 QQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLA 215
Query: 794 VIYVTHQVEFLPAA-DLILVMKDGKITQAGKYNDILNS 830
IYVTH +E + A IL++KDG+ Q G DIL S
Sbjct: 216 XIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTS 253
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/96 (36%), Positives = 54/96 (56%), Gaps = 12/96 (12%)
Query: 742 LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLR------SKTVI 795
LSGG++QR+ +ARAL + L D+P SAVD T K VL+ LR ++
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKT-----KGVLMEELRFVQREFDVPIL 181
Query: 796 YVTHQ-VEFLPAADLILVMKDGKITQAGKYNDILNS 830
+VTH +E AD + VM +G+I + GK ++ ++
Sbjct: 182 HVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217
Score = 53.1 bits (126), Expect = 9e-07, Method: Composition-based stats.
Identities = 54/215 (25%), Positives = 94/215 (43%), Gaps = 28/215 (13%)
Query: 1087 IVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTMFEGT- 1145
++G TG+GKS ++ + IV+P GE+ ++G +I+ L R + +PQD +F
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITP--LPPERRGIGFVPQDYALFPHLS 86
Query: 1146 --------VRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQR 1197
+RN + + E+ E L L D K +L S G+R
Sbjct: 87 VYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDR---KPARL-----------SGGER 132
Query: 1198 QLVCLGRXXXXXXXXXXXDEATASVDTATDNLIQQTLR--QHFSDCTVITIAHR-ITSVI 1254
Q V L R DE ++VD T ++ + LR Q D ++ + H I + +
Sbjct: 133 QRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAM 192
Query: 1255 DSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVA 1289
+D V ++ +G I E +L K+ A+ ++
Sbjct: 193 LADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFLS 227
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 54.3 bits (129), Expect = 5e-07, Method: Composition-based stats.
Identities = 59/223 (26%), Positives = 95/223 (42%), Gaps = 26/223 (11%)
Query: 626 WDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGT---- 681
W + ++D++L++ G + + G G GK++ L I G G + +
Sbjct: 13 WKRFGDVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVAD 72
Query: 682 -------------KAYVAQS-PWIQSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEIL 727
A V QS + DNI F P+ K + +++ E L
Sbjct: 73 PEKGVFVPPKERDVAXVFQSYALYPHXTVYDNIAF--PLKLRKVPKQEIDKRVREVAEXL 130
Query: 728 SFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLG 787
G ++ + LSGGQ+QR+ + RA+ + ++L D+P S +DA E L
Sbjct: 131 --GLTELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAE-LKK 187
Query: 788 LLRS--KTVIYVTH-QVEFLPAADLILVMKDGKITQAGKYNDI 827
L R T IYVTH QVE D I V G++ Q G +++
Sbjct: 188 LQRQLGVTTIYVTHDQVEAXTXGDRIAVXNKGELQQVGTPDEV 230
Score = 35.0 bits (79), Expect = 0.24, Method: Composition-based stats.
Identities = 51/247 (20%), Positives = 106/247 (42%), Gaps = 28/247 (11%)
Query: 1053 GEVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGE 1112
EV ++N+ R+ ++ L+ G ++G +G GK+T ++ + + EPT G+
Sbjct: 5 AEVKLINIWKRFGD--VTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQ 62
Query: 1113 IVIDGINISS----IGLHDLRSRLSIIPQDPTMF-EGTVRNNLD-PLEEYK------DEE 1160
I I+ ++ + + ++ + Q ++ TV +N+ PL+ K D+
Sbjct: 63 IYIEDNLVADPEKGVFVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKR 122
Query: 1161 IWEALDKCQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRXXXXXXXXXXXDEATA 1220
+ E + L + + K +L S GQRQ V LGR DE +
Sbjct: 123 VREVAEXLGLTELLNRKPREL-----------SGGQRQRVALGRAIIRRPKVFLXDEPLS 171
Query: 1221 SVDTATDNLIQQTLR--QHFSDCTVITIAH-RITSVIDSDMVLLLSHGIIEEYDSPTKLL 1277
++D + L+ Q T I + H ++ + D + + + G +++ +P ++
Sbjct: 172 NLDAKLRVKXRAELKKLQRQLGVTTIYVTHDQVEAXTXGDRIAVXNKGELQQVGTPDEVY 231
Query: 1278 ENKSSSF 1284
++F
Sbjct: 232 YKPVNTF 238
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 99/235 (42%), Gaps = 49/235 (20%)
Query: 626 WDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISG----------- 674
++ S L+ IN+ + G A+ G G GKS+L G + SG
Sbjct: 15 YNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDY 74
Query: 675 ----TLKLCGTKAYVAQSPWIQ--SGNIEDNILFGK-----PMD--REKYDRVLEACSLK 721
+KL + V Q P Q S ++ ++ FG P D R++ D L+ ++
Sbjct: 75 SRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIE 134
Query: 722 ----KDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTG 777
K LSFG QK+R+ IA L + + + D+P + +D
Sbjct: 135 HLKDKPTHCLSFG---------------QKKRVAIAGVLVMEPKVLILDEPTAGLDPMGV 179
Query: 778 SHLFKEVLLGLLRSK---TVIYVTHQVEFLPA-ADLILVMKDGKITQAGKYNDIL 828
S + K LL ++ + T+I TH ++ +P D + VMK+G++ G ++
Sbjct: 180 SEIMK--LLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 232
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 96/226 (42%), Gaps = 29/226 (12%)
Query: 1072 LRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDG--INISSIGLHDLR 1129
L+G+ G T I+G G GKSTL Q I++P++G I+ D I+ S G+ LR
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 1130 SRLSIIPQDP--TMFEGTVRNNLDPLEEYKDEEIWEALDKCQLGDEVRNKEGKLDSRVTE 1187
+ I+ QDP +F +V Y+D + A++ DE+R ++D+ +
Sbjct: 84 ESIGIVFQDPDNQLFSASV---------YQDVS-FGAVNMKLPEDEIRK---RVDNALKR 130
Query: 1188 NG---------ENWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTATDNLIQQTL--RQ 1236
G S GQ++ V + DE TA +D + I + L Q
Sbjct: 131 TGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQ 190
Query: 1237 HFSDCTVITIAHRITSV-IDSDMVLLLSHGIIEEYDSPTKLLENKS 1281
T+I H I V + D V ++ G + +P ++ K
Sbjct: 191 KELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKE 236
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 4/115 (3%)
Query: 708 REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDD 767
R + ++E S K L ++ + V+ + LSGG KQR+ IA AL D + + D+
Sbjct: 123 RWSHSELIEKASEK--LRMVRLNPEAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDE 180
Query: 768 PFSAVDAHTGSHLFKEVLLGLLRSK-TVIYVTHQVEFLPA-ADLILVMKDGKITQ 820
P SA+D T +H+ + + K T+I+VTH + AD + V+ G + +
Sbjct: 181 PTSALDVLTQAHIIQLLKELKKMLKITLIFVTHDIAVAAELADKVAVIYGGNLVE 235
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 102/225 (45%), Gaps = 32/225 (14%)
Query: 1085 TGIVGRTGSGKSTLIQTLFRIVEPT----AGEIVIDGINISSIGLHDLR----SRLSIIP 1136
T IVG + SGKST+I+ + + + P +G ++ G ++ ++ +LR ++++P
Sbjct: 37 TAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRKIRWKEIALVP 96
Query: 1137 Q------DPTMFEGTVRNNLDPLEEY-----KDEEIWEALDKCQLGDEVR-NKEGKLDSR 1184
Q +PTM + + D +E + E I +A +K ++ VR N E L+S
Sbjct: 97 QAAQQSLNPTM--KVIEHFKDTVEAHGVRWSHSELIEKASEKLRM---VRLNPEAVLNSY 151
Query: 1185 VTENGENWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTATDNLIQQ--TLRQHFSDCT 1242
+ S G +Q V + DE T+++D T I Q + T
Sbjct: 152 PLQ----LSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKIT 207
Query: 1243 VITIAHRITSVID-SDMVLLLSHGIIEEYDSPTKLLENKSSSFAQ 1286
+I + H I + +D V ++ G + EY+S ++ +N + +
Sbjct: 208 LIFVTHDIAVAAELADKVAVIYGGNLVEYNSTFQIFKNPLHPYTR 252
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 50.8 bits (120), Expect = 5e-06, Method: Composition-based stats.
Identities = 52/187 (27%), Positives = 86/187 (45%), Gaps = 34/187 (18%)
Query: 634 TLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQS 693
+L +INL+V +G +V + G GSGK++LL I G +P SG + + G + ++ S
Sbjct: 20 SLENINLEV-NGEKVIILGPNGSGKTTLLRAISGLLP-YSGNIFINGMEVRKIRNYIRYS 77
Query: 694 GNIEDNILFG-------------KPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGI 740
N+ + G K +DR+ + +L+A L ++ ++ +
Sbjct: 78 TNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEE----------ILRRKLY 127
Query: 741 NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDA---HTGSHLFKEVLLGLLRSKTVIYV 797
LS GQ ++ + AL +I D+PF VDA H S KE K I V
Sbjct: 128 KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY------GKEGILV 181
Query: 798 THQVEFL 804
TH+++ L
Sbjct: 182 THELDML 188
Score = 40.0 bits (92), Expect = 0.008, Method: Composition-based stats.
Identities = 47/170 (27%), Positives = 80/170 (47%), Gaps = 23/170 (13%)
Query: 1082 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRSRLSIIPQDPTM 1141
G K I+G GSGK+TL++ + ++ P +G I I+G+ + I R+ + P
Sbjct: 30 GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI-----RNYIRYSTNLPEA 83
Query: 1142 FE-GTVRNNLDPL-EEYK--DEEIW-EALDKCQLGDEV-RNKEGKLDSRVTENGENWSMG 1195
+E G N++ L EE K D +++ E L +LG+E+ R K KL S G
Sbjct: 84 YEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKL-----------SAG 132
Query: 1196 QRQLVCLGRXXXXXXXXXXXDEATASVDTATDNLIQQTLRQHFSDCTVIT 1245
Q LV DE +VD A ++I + ++++ + ++T
Sbjct: 133 QSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVT 182
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 50.1 bits (118), Expect = 9e-06, Method: Composition-based stats.
Identities = 59/212 (27%), Positives = 97/212 (45%), Gaps = 42/212 (19%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILG--EVPKISGTLKLCGTK---------- 682
L+ I+L V G V++ G GSGKS+LL ILG + P G + L G +
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLY-ILGLLDAPT-EGKVFLEGKEVDYTNEKELS 77
Query: 683 -------AYVAQSPWI--QSGNIEDNIL----FGKPMD--REKYDRVLEACSLKKDLEIL 727
+V Q ++ + +E+ I+ GKP +E+ + +L L
Sbjct: 78 LLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSE---------L 128
Query: 728 SFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLG 787
GD+ + + LSGG++QR+ IARAL + + D+P +D+ + ++ L
Sbjct: 129 GLGDK--LSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVM-DIFLK 185
Query: 788 LLRSKT-VIYVTHQVEFLPAADLILVMKDGKI 818
+ T ++ VTH+ E L MKDGK+
Sbjct: 186 INEGGTSIVMVTHERELAELTHRTLEMKDGKV 217
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 48/192 (25%), Positives = 87/192 (45%), Gaps = 26/192 (13%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIG---LHD 1127
+L+G++ + G I+G +GSGKSTL+ L + PT G++ ++G + L
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 1128 LRSR-LSIIPQ------DPTMFEGTVRNNL---DPLEEYKDEEIWEALDKCQLGDEVRNK 1177
LR+R L + Q + T E + L P +E K+ + L + LGD++ K
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEY-LLSELGLGDKLSRK 137
Query: 1178 EGKLDSRVTENGENWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTA-TDNLIQQTLRQ 1236
+L S G++Q V + R DE T ++D+A T ++ L+
Sbjct: 138 PYEL-----------SGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKI 186
Query: 1237 HFSDCTVITIAH 1248
+ +++ + H
Sbjct: 187 NEGGTSIVMVTH 198
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 49/240 (20%), Positives = 106/240 (44%), Gaps = 24/240 (10%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS 1130
+L+G++ G G++G G+GK+T ++ + +++P++G + + G N+ H++R
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRK 88
Query: 1131 RLSIIPQDPTMFEGTVRNNLDPLEEYK---------DEEIWEALDKCQLGDEVRNKEGKL 1181
+S +P+ E N+ +E + EI E +++ E+ K+
Sbjct: 89 LISYLPE-----EAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVER---ATEIAGLGEKI 140
Query: 1182 DSRVTENGENWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTATDNLIQQTLRQHFSD- 1240
RV+ +S G + + + R DE T+ +D +++ L+Q +
Sbjct: 141 KDRVS----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEG 196
Query: 1241 CTVITIAHRITSV-IDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQLVAEYTQRSSSSL 1299
T++ +H + V D + L+ +G I E + +L E + + V E + S +
Sbjct: 197 LTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFEEVVKCSENF 256
Score = 36.6 bits (83), Expect = 0.090, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 7/111 (6%)
Query: 720 LKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSH 779
+++ EI G++ I +R S G +++ IARAL + + + D+P S +D
Sbjct: 127 VERATEIAGLGEK--IKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNARE 184
Query: 780 LFKEVLLGLLRSKTVIYVTH---QVEFLPAADLILVMKDGKITQAGKYNDI 827
+ K + T++ +H +VEFL D I ++ +G I + G ++
Sbjct: 185 VRKILKQASQEGLTILVSSHNMLEVEFL--CDRIALIHNGTIVETGTVEEL 233
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 89/187 (47%), Gaps = 14/187 (7%)
Query: 641 KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQS---GNIE 697
++ G + + G G GK++ + + G G ++ T AY Q +I++ G +
Sbjct: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQ--YIKAEYEGTVY 421
Query: 698 DNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALY 757
+ L K +D K + L K L I+ D+ V +LSGG+ QR+ IA L
Sbjct: 422 E--LLSK-IDSSKLNSNFYKTELLKPLGIIDLYDRNVE-----DLSGGELQRVAIAATLL 473
Query: 758 QDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRS-KTVIYVTHQVEFLPAADLILVMKDG 816
+DADIYL D+P + +D + + + + ++ KT + V H V + L++ +G
Sbjct: 474 RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEG 533
Query: 817 KITQAGK 823
+ + G+
Sbjct: 534 EPGRHGR 540
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%)
Query: 741 NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQ 800
LSGG+ QR+ IA AL + A Y FD+P S +D + + + K V+ V H
Sbjct: 214 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 273
Query: 801 VEFL 804
+ L
Sbjct: 274 LAVL 277
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 1082 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEI 1113
G GIVG G GK+T ++ L + EPT G++
Sbjct: 368 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV 399
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 89/187 (47%), Gaps = 14/187 (7%)
Query: 641 KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQS---GNIE 697
++ G + + G G GK++ + + G G ++ T AY Q +I++ G +
Sbjct: 378 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQ--YIKAEYEGTVY 435
Query: 698 DNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALY 757
+ L K +D K + L K L I+ D+ V +LSGG+ QR+ IA L
Sbjct: 436 E--LLSK-IDSSKLNSNFYKTELLKPLGIIDLYDRNVE-----DLSGGELQRVAIAATLL 487
Query: 758 QDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRS-KTVIYVTHQVEFLPAADLILVMKDG 816
+DADIYL D+P + +D + + + + ++ KT + V H V + L++ +G
Sbjct: 488 RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEG 547
Query: 817 KITQAGK 823
+ + G+
Sbjct: 548 EPGRHGR 554
Score = 38.9 bits (89), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%)
Query: 741 NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQ 800
LSGG+ QR+ IA AL + A Y FD+P S +D + + + K V+ V H
Sbjct: 228 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 287
Query: 801 VEFL 804
+ L
Sbjct: 288 LAVL 291
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 1082 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEI 1113
G GIVG G GK+T ++ L + EPT G++
Sbjct: 382 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV 413
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 49/203 (24%), Positives = 96/203 (47%), Gaps = 31/203 (15%)
Query: 615 TAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISG 674
+ +EI D + +D P L I + + G V G G GK++LL I + + G
Sbjct: 9 SKLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKG 64
Query: 675 TL--------KLCGTKAYVAQSPWI-QSGNIEDNI-----LFGKPMDREKYDRVLEACSL 720
+ K+ G ++ + + + ++ED + L+G +++ + LE+
Sbjct: 65 EIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES--- 121
Query: 721 KKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHL 780
+E+L + +GE LS G +R+Q+A L +A+IY+ DDP A+D + +
Sbjct: 122 ---VEVLDLKKK--LGE----LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKV 172
Query: 781 FKEVLLGLLRSKTVIYVTHQVEF 803
K + L +L+ K ++ ++ + E
Sbjct: 173 LKSI-LEILKEKGIVIISSREEL 194
Score = 37.0 bits (84), Expect = 0.077, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Query: 1054 EVDILNLQVRYAPHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEI 1113
+++I +L V Y VL +T T G G G GK+TL++T+ ++P GEI
Sbjct: 10 KLEIRDLSVGYDKP---VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Query: 1114 VIDGINISSIGLHDLRSRLSIIPQD 1138
+ +G+ I+ + + ++ +P++
Sbjct: 67 IYNGVPITKV-----KGKIFFLPEE 86
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 12/164 (7%)
Query: 641 KVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYVAQSPWIQSGNIEDNI 700
++ G + + G G GK++ + + G G ++ T AY Q +I++ + E +
Sbjct: 308 EIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDLTVAYKPQ--YIKA-DYEGTV 364
Query: 701 --LFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQ 758
L K +D K + L K L I+ D+ V LSGG+ QR+ IA L +
Sbjct: 365 YELLSK-IDASKLNSNFYKTELLKPLGIIDLYDREVN-----ELSGGELQRVAIAATLLR 418
Query: 759 DADIYLFDDPFSAVDAHTGSHLFKEVL-LGLLRSKTVIYVTHQV 801
DADIYL D+P + +D + + + L KT + V H V
Sbjct: 419 DADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEHDV 462
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 87/195 (44%), Gaps = 30/195 (15%)
Query: 642 VFHGMRVAVCGTVGSGKSSLLSCILGE-VPKI-------SGTLKLCGTKAYVAQSPWIQS 693
V G V + G G+GKS+ + + G+ +P + G ++ +++
Sbjct: 44 VKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN 103
Query: 694 GNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQT-------------VIGERGI 740
G I +P+ + +Y ++ K +E+L D+T + ER I
Sbjct: 104 GEI-------RPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREI 156
Query: 741 -NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTH 799
+LSGG+ QR+ IA AL ++A Y FD+P S +D + + + K+V+ V H
Sbjct: 157 QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEH 216
Query: 800 QVEFLPA-ADLILVM 813
+ L +D+I V+
Sbjct: 217 DLAVLDYLSDIIHVV 231
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 1080 PGGMKTG----IVGRTGSGKSTLIQTLFRIVEPTAGEI 1113
PG +K G IVG G GK+T ++ L + EPT G+I
Sbjct: 306 PGEIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKI 343
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 95/217 (43%), Gaps = 33/217 (15%)
Query: 640 LKVFHGMRVAVC--------GTVGSGKSSLLSCILGEVPKISGTLKLCGTK--------- 682
K G+ ++VC G GSGKS+L++ I G + G +
Sbjct: 20 FKALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 79
Query: 683 -----AYVAQSPW-IQSGNIEDNILFGK------PMDREKYDRVL--EACSLKKDLEILS 728
Q+P ++ + +N+L G+ P++ Y + + E ++K +IL
Sbjct: 80 YHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILE 139
Query: 729 FGDQTVIGERGI-NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLG 787
F + + +R LSGGQ + ++I RAL + + + D+P + V +F VL
Sbjct: 140 FLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLEL 199
Query: 788 LLRSKTVIYVTHQVEF-LPAADLILVMKDGKITQAGK 823
+ T + + H+++ L D + VM +G+I G+
Sbjct: 200 KAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 79/209 (37%), Gaps = 38/209 (18%)
Query: 1072 LRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS- 1130
L G++ + G T I+G GSGKSTLI + ++ G + + +I++ +L
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 1131 ---RLSIIPQDPTMFEGTVRNNL--------------------DPLEEYKDEEIWEALDK 1167
R PQ + E TV NL P EE E+ ++ L+
Sbjct: 83 GIVRTFQTPQ--PLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEF 140
Query: 1168 CQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTA-T 1226
+L K G+L S GQ +LV +GR DE A V
Sbjct: 141 LKLSHLYDRKAGEL-----------SGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLA 189
Query: 1227 DNLIQQTLRQHFSDCTVITIAHRITSVID 1255
++ L T + I HR+ V++
Sbjct: 190 HDIFNHVLELKAKGITFLIIEHRLDIVLN 218
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 95/215 (44%), Gaps = 25/215 (11%)
Query: 634 TLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK----------- 682
L +++ V G + G GSGKS+L++ I G + G +
Sbjct: 22 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH 81
Query: 683 ---AYVAQSPW-IQSGNIEDNILFGK------PMDREKYDRVL--EACSLKKDLEILSFG 730
Q+P ++ + +N+L G+ P++ Y + + E ++K +IL F
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 731 DQTVIGERGI-NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL 789
+ + +R LSGGQ + ++I RAL + + + D+P + V +F VL
Sbjct: 142 KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA 201
Query: 790 RSKTVIYVTHQVEF-LPAADLILVMKDGKITQAGK 823
+ T + + H+++ L D + VM +G+I G+
Sbjct: 202 KGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236
Score = 36.6 bits (83), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 79/209 (37%), Gaps = 38/209 (18%)
Query: 1072 LRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS- 1130
L G++ + G T I+G GSGKSTLI + ++ G + + +I++ +L
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 1131 ---RLSIIPQDPTMFEGTVRNNL--------------------DPLEEYKDEEIWEALDK 1167
R PQ + E TV NL P EE E+ ++ L+
Sbjct: 83 GIVRTFQTPQ--PLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEF 140
Query: 1168 CQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTA-T 1226
+L K G+L S GQ +LV +GR DE A V
Sbjct: 141 LKLSHLYDRKAGEL-----------SGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLA 189
Query: 1227 DNLIQQTLRQHFSDCTVITIAHRITSVID 1255
++ L T + I HR+ V++
Sbjct: 190 HDIFNHVLELKAKGITFLIIEHRLDIVLN 218
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 46.6 bits (109), Expect = 1e-04, Method: Composition-based stats.
Identities = 49/215 (22%), Positives = 94/215 (43%), Gaps = 27/215 (12%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCG-------------- 680
L +++ V G + G GSGKS+L++ I G + G +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 681 --TKAYVAQSPWIQSGNIEDNILFGK------PMDREKYDRVL--EACSLKKDLEILSFG 730
+ + P ++ + +N+L G+ P++ Y + + E ++K +IL F
Sbjct: 83 GIVRTFQTPQP-LKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 731 DQTVIGERGI-NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLL 789
+ + +R LSGGQ + ++I RAL + + + D P + V +F VL
Sbjct: 142 KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKA 201
Query: 790 RSKTVIYVTHQVEF-LPAADLILVMKDGKITQAGK 823
+ T + + H+++ L D + VM +G+I G+
Sbjct: 202 KGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236
Score = 34.3 bits (77), Expect = 0.45, Method: Composition-based stats.
Identities = 50/209 (23%), Positives = 79/209 (37%), Gaps = 38/209 (18%)
Query: 1072 LRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVIDGINISSIGLHDLRS- 1130
L G++ + G T I+G GSGKSTLI + ++ G + + +I++ +L
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 1131 ---RLSIIPQDPTMFEGTVRNNL--------------------DPLEEYKDEEIWEALDK 1167
R PQ + E TV NL P EE E+ ++ L+
Sbjct: 83 GIVRTFQTPQ--PLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEF 140
Query: 1168 CQLGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTA-T 1226
+L K G+L S GQ +LV +GR D+ A V
Sbjct: 141 LKLSHLYDRKAGEL-----------SGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLA 189
Query: 1227 DNLIQQTLRQHFSDCTVITIAHRITSVID 1255
++ L T + I HR+ V++
Sbjct: 190 HDIFNHVLELKAKGITFLIIEHRLDIVLN 218
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 76/188 (40%), Gaps = 52/188 (27%)
Query: 648 VAVCGTVGSGKSSLLSCILGEV-PKI-----------------------------SGTLK 677
+ V G G GK+++L + GE+ P S LK
Sbjct: 28 LGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELK 87
Query: 678 LCGTKAYVAQSPWIQSGNIEDNILFGKPMDREKYDRVLEACSL----KKDLEILSFGDQT 733
+ YV + G + N + K +R K D V E ++ KD ILS
Sbjct: 88 IVHKIQYVEYASKFLKGTV--NEILTKIDERGKKDEVKELLNMTNLWNKDANILS----- 140
Query: 734 VIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKT 793
GG QR+ +A +L ++AD+Y+FD P S +D ++ K + LL++K
Sbjct: 141 ----------GGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAK-AIRELLKNKY 189
Query: 794 VIYVTHQV 801
VI V H +
Sbjct: 190 VIVVDHDL 197
Score = 37.0 bits (84), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 741 NLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIY-VTH 799
+LSGG+ Q++ IA L ++AD+Y+ D P S +D + K + K V + + H
Sbjct: 385 DLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDH 444
Query: 800 QVEFLP-AADLILVMKDGKITQAG 822
+ AD I+V K G+ +AG
Sbjct: 445 DLSIHDYIADRIIVFK-GEPEKAG 467
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 57/211 (27%), Positives = 95/211 (45%), Gaps = 18/211 (8%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTK-----AYVAQSP 689
++ I+LKV G V + G G+GK++ LS I G V G + G A+V
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRX 81
Query: 690 WI----QSGNIEDNILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGER----GIN 741
I + I + + + Y+R + +K+DLE + F + ER G
Sbjct: 82 GIALVPEGRRIFPELTVYENLXXGAYNRK-DKEGIKRDLEWI-FSLFPRLKERLKQLGGT 139
Query: 742 LSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQV 801
LSGG++Q + I RAL + D+P + S +F EV+ + + T I + Q
Sbjct: 140 LSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVF-EVIQKINQEGTTILLVEQN 198
Query: 802 EF--LPAADLILVMKDGKITQAGKYNDILNS 830
L A V++ G+I GK +++L++
Sbjct: 199 ALGALKVAHYGYVLETGQIVLEGKASELLDN 229
Score = 41.2 bits (95), Expect = 0.004, Method: Composition-based stats.
Identities = 45/170 (26%), Positives = 84/170 (49%), Gaps = 14/170 (8%)
Query: 1055 VDILNLQVRY-APHLPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEI 1113
+++ +L V Y A H ++G+ P G ++G G+GK+T + + +V G+I
Sbjct: 7 LEVQSLHVYYGAIH---AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 1114 VIDGINISSIGLHDL-RSRLSIIPQDPTMF-EGTVRNNLDP-LEEYKDEE-IWEALDKCQ 1169
+ +G +I++ H + R ++++P+ +F E TV NL KD+E I L
Sbjct: 64 IFNGQDITNKPAHVINRXGIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRDL---- 119
Query: 1170 LGDEVRNKEGKLDSRVTENGENWSMGQRQLVCLGRXXXXXXXXXXXDEAT 1219
+ + + +L R+ + G S G++Q + +GR DE +
Sbjct: 120 --EWIFSLFPRLKERLKQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPS 167
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 16/101 (15%)
Query: 705 PMDREKYDRVLEACS-LKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIY 763
P D ++Y ++L+ + LK+D+E LSGG+ QR I + Q+AD+Y
Sbjct: 199 PEDVKRYIKILQLENVLKRDIE---------------KLSGGELQRFAIGMSCVQEADVY 243
Query: 764 LFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFL 804
+FD+P S +D + + + L +K VI V H + L
Sbjct: 244 MFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVL 284
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 70/298 (23%), Positives = 124/298 (41%), Gaps = 60/298 (20%)
Query: 529 VFWGAPTFVSVATFGACMLLGIPL-ESGKILSALATFRILQEPIYNLPDTISMIIQTKVS 587
+ +G P+ V T A + GI + G I + FR T+
Sbjct: 293 IIYGVPSVYGVVTLPASVREGINIFLDGHIPAENLRFR------------------TEAL 334
Query: 588 LDRIASFLCLDDLQSDVVEKHPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMR 647
RIA +DLQ+D R S +++ G+F ++ + +I
Sbjct: 335 QFRIAD--ATEDLQNDSAS---RAFSYPSLKKTQGDFVLNVEEGEFSDSEI--------- 380
Query: 648 VAVCGTVGSGKSSLLSCILG--------EVPKISGTLKLCGTKAYVAQSPWIQSGNIEDN 699
+ + G G+GK++L+ + G ++PK++ ++K + + P G +
Sbjct: 381 LVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMK---PQKIAPKFP----GTVRQ- 432
Query: 700 ILFGKPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQD 759
LF K + R ++ + K L I DQ V +LSGG+ QR+ I AL
Sbjct: 433 -LFFKKI-RGQFLNPQFQTDVVKPLRIDDIIDQEVQ-----HLSGGELQRVAIVLALGIP 485
Query: 760 ADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTHQVEFLPA---ADLILVMK 814
ADIYL D+P + +D+ K + +L +K ++ +F+ A AD ++V +
Sbjct: 486 ADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEH-DFIMATYLADKVIVFE 542
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 65/145 (44%), Gaps = 21/145 (14%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCIL-GEVPKISGTLKLCGTKAYVAQSPWIQS 693
L L++ R +CG G GKS+L+ I G+V T + C T YV
Sbjct: 451 LNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFP-TQEECRT-VYVEHD----- 503
Query: 694 GNIEDNILFGKPMDREKYDRVLEAC-----SLKKDLEILSFGDQTVIGERGINLSGGQKQ 748
+ G D D V E+ ++K L F D+ +I LSGG K
Sbjct: 504 -------IDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDE-MIAMPISALSGGWKM 555
Query: 749 RIQIARALYQDADIYLFDDPFSAVD 773
++ +ARA+ ++ADI L D+P + +D
Sbjct: 556 KLALARAVLRNADILLLDEPTNHLD 580
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 19/123 (15%)
Query: 704 KPMDREKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIY 763
+P+ R++ + E CS+ L + V R LSGGQK ++ +A +Q +
Sbjct: 873 RPLTRKEIE---EHCSM------LGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLI 923
Query: 764 LFDDPFSAVDAHT---GSHLFKEVLLGLLRSKTVIYVTHQVEFLPA-ADLILVMKDGKIT 819
+ D+P + +D + S KE G VI +TH EF + + +KDG++T
Sbjct: 924 VLDEPTNYLDRDSLGALSKALKEFEGG------VIIITHSAEFTKNLTEEVWAVKDGRMT 977
Query: 820 QAG 822
+G
Sbjct: 978 PSG 980
Score = 38.1 bits (87), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 17/98 (17%)
Query: 630 SNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISG---TLKLCGTKAYVA 686
++ P + DIN + R+AV G G+GKS+L++ + GE+ SG T + C AY+
Sbjct: 684 TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRI-AYIK 742
Query: 687 QSPWIQSGNIEDNI----------LFGKPMDREKYDRV 714
Q + +IE ++ F DRE DR
Sbjct: 743 QHAF---AHIESHLDKTPSEYIQWRFQTGEDRETMDRA 777
Score = 33.5 bits (75), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Query: 1084 KTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVI-DGINISSIGLHDLRSRLSIIPQDPTMF 1142
+ ++G G+GKSTLI L + PT+GE+ + I+ I H S + + P+ +
Sbjct: 701 RIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEY 760
Query: 1143 ------EGTVRNNLDPLEEYKDEEIWEALDK 1167
G R +D +E EA++K
Sbjct: 761 IQWRFQTGEDRETMDRANRQINENDAEAMNK 791
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 63/145 (43%), Gaps = 21/145 (14%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCIL-GEVPKISGTLKLCGTKAYVAQSPWIQS 693
L L++ R +CG G GKS+L I G+V T + C T YV
Sbjct: 445 LNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVDGFP-TQEECRT-VYVEHD----- 497
Query: 694 GNIEDNILFGKPMDREKYDRVLEAC-----SLKKDLEILSFGDQTVIGERGINLSGGQKQ 748
+ G D D V E+ ++K L F D+ + LSGG K
Sbjct: 498 -------IDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEXIAXPISA-LSGGWKX 549
Query: 749 RIQIARALYQDADIYLFDDPFSAVD 773
++ +ARA+ ++ADI L D+P + +D
Sbjct: 550 KLALARAVLRNADILLLDEPTNHLD 574
Score = 38.1 bits (87), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 18/111 (16%)
Query: 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISG-- 674
+++ + F + +S P + DIN + R+AV G G+GKS+L++ + GE+ SG
Sbjct: 666 VKVTNXEFQYPGTSK-PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 724
Query: 675 -TLKLCGTKAYVAQSPWIQSGNIEDNI----------LFGKPMDREKYDRV 714
T + C AY+ Q + +IE ++ F DRE DR
Sbjct: 725 YTHENCRI-AYIKQHAF---AHIESHLDKTPSEYIQWRFQTGEDRETXDRA 771
Score = 38.1 bits (87), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 21/124 (16%)
Query: 704 KPMDREKYDRVLEACS-LKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADI 762
+P+ R++ + E CS L D EI+S R LSGGQK ++ +A +Q +
Sbjct: 867 RPLTRKEIE---EHCSXLGLDPEIVSHS-------RIRGLSGGQKVKLVLAAGTWQRPHL 916
Query: 763 YLFDDPFSAVDAHT---GSHLFKEVLLGLLRSKTVIYVTHQVEFLPA-ADLILVMKDGKI 818
+ D+P + +D + S KE G VI +TH EF + + +KDG+
Sbjct: 917 IVLDEPTNYLDRDSLGALSKALKEFEGG------VIIITHSAEFTKNLTEEVWAVKDGRX 970
Query: 819 TQAG 822
T +G
Sbjct: 971 TPSG 974
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 1084 KTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVI-DGINISSIGLHDLRSRLSIIPQDPTMF 1142
+ ++G G+GKSTLI L + PT+GE+ + I+ I H S + + P+ +
Sbjct: 695 RIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEY 754
Query: 1143 ------EGTVRNNLDPLEEYKDEEIWEALDK 1167
G R D +E EA +K
Sbjct: 755 IQWRFQTGEDRETXDRANRQINENDAEAXNK 785
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 63/145 (43%), Gaps = 21/145 (14%)
Query: 635 LRDINLKVFHGMRVAVCGTVGSGKSSLLSCIL-GEVPKISGTLKLCGTKAYVAQSPWIQS 693
L L++ R +CG G GKS+L I G+V T + C T YV
Sbjct: 451 LNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVDGFP-TQEECRT-VYVEHD----- 503
Query: 694 GNIEDNILFGKPMDREKYDRVLEAC-----SLKKDLEILSFGDQTVIGERGINLSGGQKQ 748
+ G D D V E+ ++K L F D+ + LSGG K
Sbjct: 504 -------IDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEXIAXPISA-LSGGWKX 555
Query: 749 RIQIARALYQDADIYLFDDPFSAVD 773
++ +ARA+ ++ADI L D+P + +D
Sbjct: 556 KLALARAVLRNADILLLDEPTNHLD 580
Score = 38.5 bits (88), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 21/124 (16%)
Query: 704 KPMDREKYDRVLEACS-LKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADI 762
+P+ R++ + E CS L D EI+S R LSGGQK ++ +A +Q +
Sbjct: 873 RPLTRKEIE---EHCSXLGLDPEIVSHS-------RIRGLSGGQKVKLVLAAGTWQRPHL 922
Query: 763 YLFDDPFSAVDAHT---GSHLFKEVLLGLLRSKTVIYVTHQVEFLPA-ADLILVMKDGKI 818
+ D+P + +D + S KE G VI +TH EF + + +KDG+
Sbjct: 923 IVLDEPTNYLDRDSLGALSKALKEFEGG------VIIITHSAEFTKNLTEEVWAVKDGRX 976
Query: 819 TQAG 822
T +G
Sbjct: 977 TPSG 980
Score = 38.1 bits (87), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 18/111 (16%)
Query: 617 IEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILGEVPKISG-- 674
+++ + F + +S P + DIN + R+AV G G+GKS+L++ + GE+ SG
Sbjct: 672 VKVTNXEFQYPGTSK-PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
Query: 675 -TLKLCGTKAYVAQSPWIQSGNIEDNI----------LFGKPMDREKYDRV 714
T + C AY+ Q + +IE ++ F DRE DR
Sbjct: 731 YTHENCRI-AYIKQHAF---AHIESHLDKTPSEYIQWRFQTGEDRETXDRA 777
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 1084 KTGIVGRTGSGKSTLIQTLFRIVEPTAGEIVI-DGINISSIGLHDLRSRLSIIPQDPTMF 1142
+ ++G G+GKSTLI L + PT+GE+ + I+ I H S + + P+ +
Sbjct: 701 RIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEY 760
Query: 1143 ------EGTVRNNLDPLEEYKDEEIWEALDK 1167
G R D +E EA +K
Sbjct: 761 IQWRFQTGEDRETXDRANRQINENDAEAXNK 791
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 735 IGERGINLSGGQKQRIQIARALYQDA---DIYLFDDPFSAVDAHTGSHLFKEVLLGLLRS 791
+G+ LSGG+ QRI++A L + +Y+ D+P + + L ++++ +
Sbjct: 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAG 783
Query: 792 KTVIYVTHQVEFLPAADLILVMKDGKITQAGK 823
TVI V H+++ + A+D +L + G G+
Sbjct: 784 NTVIAVEHKMQVVAASDWVLDIGPGAGEDGGR 815
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%)
Query: 613 SETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSL 661
S + + DG F + L+DI++KV V G GSGKSSL
Sbjct: 4 SRPSPDFPDGGFVQVRGARQHNLKDISVKVPRDALVVFTGVSGSGKSSL 52
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 37.4 bits (85), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
Query: 719 SLKKDLEIL-SFGDQTV-IGERGINLSGGQKQRIQIARALYQ---DADIYLFDDPFSAVD 773
S+K+ L++L G V +G+ LSGG+ QRI++A L + +Y+ D+P +
Sbjct: 781 SIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLH 840
Query: 774 AHTGSHLFKEVLLGLL-RSKTVIYVTHQVEFLPAADLIL 811
L EVL L+ R TVI + H ++ + AD I+
Sbjct: 841 FEDVRKLV-EVLHRLVDRGNTVIVIEHNLDVIKNADHII 878
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 742 LSGGQKQRIQIARALYQDAD--IYLFDDPFSAVDAHTGSHLFKEVLLGLLRS--KTVIYV 797
LSGG+ QRI++A + IY+ D+P + L K L LR TVI V
Sbjct: 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIK--TLKKLRDLGNTVIVV 522
Query: 798 THQVEFLPAADLIL 811
H E + AD I+
Sbjct: 523 EHDEEVIRNADHII 536
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 37.0 bits (84), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 735 IGERGINLSGGQKQRIQIARALYQDAD---IYLFDDPFSAVDAHTGSHLFKEVLLGLL-R 790
+G+ LSGG+ QR+++A L++ ++ +Y+ D+P + + + L +VL L+
Sbjct: 839 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLL-DVLHRLVDN 897
Query: 791 SKTVIYVTHQVEFLPAADLIL 811
TV+ + H ++ + AD I+
Sbjct: 898 GDTVLVIEHNLDVIKTADYII 918
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 29/46 (63%)
Query: 621 DGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCIL 666
DG + + + L+++++K+ G VAV G GSGKS+L++ +L
Sbjct: 626 DGRWLEVVGAREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 37.0 bits (84), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 735 IGERGINLSGGQKQRIQIARALYQDAD---IYLFDDPFSAVDAHTGSHLFKEVLLGLL-R 790
+G+ LSGG+ QR+++A L++ ++ +Y+ D+P + + + L +VL L+
Sbjct: 537 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLL-DVLHRLVDN 595
Query: 791 SKTVIYVTHQVEFLPAADLIL 811
TV+ + H ++ + AD I+
Sbjct: 596 GDTVLVIEHNLDVIKTADYII 616
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 29/46 (63%)
Query: 621 DGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCIL 666
DG + + + L+++++K+ G VAV G GSGKS+L++ +L
Sbjct: 324 DGRWLEVVGAREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 37.0 bits (84), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 735 IGERGINLSGGQKQRIQIARALYQDAD---IYLFDDPFSAVDAHTGSHLFKEVLLGLL-R 790
+G+ LSGG+ QR+++A L++ ++ +Y+ D+P + + + L +VL L+
Sbjct: 839 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLL-DVLHRLVDN 897
Query: 791 SKTVIYVTHQVEFLPAADLIL 811
TV+ + H ++ + AD I+
Sbjct: 898 GDTVLVIEHNLDVIKTADYII 918
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 29/46 (63%)
Query: 621 DGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCIL 666
DG + + + L+++++K+ G VAV G GSGKS+L++ +L
Sbjct: 626 DGRWLEVVGAREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 36.2 bits (82), Expect = 0.13, Method: Composition-based stats.
Identities = 57/231 (24%), Positives = 92/231 (39%), Gaps = 20/231 (8%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTA--GEIVIDGINISSIGLHDL 1128
+L+G+ P G ++G G+GKSTL + L E T GEI++DG NI + D
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELS-PDE 76
Query: 1129 RSR--LSIIPQDPTMFEGTVRNNLDPL-------EEYKDEEIWEALDKCQLGDEVRNKEG 1179
R+R L + Q P G N L E E W + K E+ + +
Sbjct: 77 RARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKAL---ELLDWDE 133
Query: 1180 KLDSRVTENGENWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTATDNLIQQ---TLRQ 1236
SR G +S G+++ + + DE + +D ++ + +R
Sbjct: 134 SYLSRYLNEG--FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG 191
Query: 1237 HFSDCTVITIAHRITSVIDSDMVLLLSHGIIEEYDSPTKLLENKSSSFAQL 1287
VIT RI + I D V ++ G + P LE ++ + L
Sbjct: 192 PNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPELALELEAKGYEWL 242
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 103/245 (42%), Gaps = 39/245 (15%)
Query: 609 PRGSSETAIEIVDGNFAWDISSNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILG- 667
PRGS +I+ + + + LR ++L V G A+ G GSGKS+L + + G
Sbjct: 15 PRGSHMLSIKDLHVSV-----EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR 69
Query: 668 -EVPKISGTLKLCGTKAYVAQSPWIQSGN--------------IEDNILFGKPMD----- 707
+ GT++ G K +A SP ++G + + ++
Sbjct: 70 EDYEVTGGTVEFKG-KDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSY 128
Query: 708 --REKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLF 765
+E DR +++ + +L + + + SGG+K+R I + + ++ +
Sbjct: 129 RGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCIL 188
Query: 766 DDPFSAVDAHTGSHLFKEVLLGL--LRS--KTVIYVTHQVEFLP--AADLILVMKDGKIT 819
D+ S +D K V G+ LR ++ I VTH L D + V+ G+I
Sbjct: 189 DESDSGLDIDA----LKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIV 244
Query: 820 QAGKY 824
++G +
Sbjct: 245 KSGDF 249
Score = 30.0 bits (66), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 84/212 (39%), Gaps = 18/212 (8%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLF--RIVEPTAGEIVIDGINISSIGLHDL 1128
+LRGL+ G I+G GSGKSTL TL E T G + G ++ ++ D
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR 94
Query: 1129 RSR-LSIIPQDPTMFEGT-----VRNNLDPLEEYKDEEIWEALDKCQLGDE----VRNKE 1178
+ + Q P G ++ L+ + Y+ +E + D L +E ++ E
Sbjct: 95 AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPE 154
Query: 1179 GKLDSRVTENGENWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTATDNLIQ---QTLR 1235
L V +S G+++ + + DE+ + +D ++ +LR
Sbjct: 155 DLLTRSVN---VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLR 211
Query: 1236 QHFSDCTVITIAHRITSVIDSDMVLLLSHGII 1267
++T RI I D V +L G I
Sbjct: 212 DGKRSFIIVTHYQRILDYIKPDYVHVLYQGRI 243
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 94/224 (41%), Gaps = 34/224 (15%)
Query: 630 SNNPTLRDINLKVFHGMRVAVCGTVGSGKSSLLSCILG--EVPKISGTLKLCGTKAYVAQ 687
+ LR ++L V G A+ G GSGKS+L + + G + GT++ G K +A
Sbjct: 12 EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKG-KDLLAL 70
Query: 688 SPWIQSGN--------------IEDNILFGKPMD-------REKYDRVLEACSLKKDLEI 726
SP ++G + + ++ +E DR +++ + +
Sbjct: 71 SPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIAL 130
Query: 727 LSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLL 786
L + + + SGG+K+R I + + ++ + D+ S +D K V
Sbjct: 131 LKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDA----LKVVAD 186
Query: 787 GL--LRS--KTVIYVTHQVEFLP--AADLILVMKDGKITQAGKY 824
G+ LR ++ I VTH L D + V+ G+I ++G +
Sbjct: 187 GVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF 230
Score = 30.4 bits (67), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 84/212 (39%), Gaps = 18/212 (8%)
Query: 1071 VLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLF--RIVEPTAGEIVIDGINISSIGLHDL 1128
+LRGL+ G I+G GSGKSTL TL E T G + G ++ ++ D
Sbjct: 16 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR 75
Query: 1129 RSR-LSIIPQDPTMFEGT-----VRNNLDPLEEYKDEEIWEALDKCQLGDE----VRNKE 1178
+ + Q P G ++ L+ + Y+ +E + D L +E ++ E
Sbjct: 76 AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPE 135
Query: 1179 GKLDSRVTENGENWSMGQRQLVCLGRXXXXXXXXXXXDEATASVDTATDNLIQ---QTLR 1235
L V +S G+++ + + DE+ + +D ++ +LR
Sbjct: 136 DLLTRSVN---VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLR 192
Query: 1236 QHFSDCTVITIAHRITSVIDSDMVLLLSHGII 1267
++T RI I D V +L G I
Sbjct: 193 DGKRSFIIVTHYQRILDYIKPDYVHVLYQGRI 224
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 1072 LRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFRIV 1106
LRG+ +FP G+ T + G +GSGKSTL+ + V
Sbjct: 658 LRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAV 692
Score = 34.7 bits (78), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 735 IGERGINLSGGQKQRIQIARALYQDA---DIYLFDDPFSAVDAHTGSHLFKEVLLGLL-R 790
+G+ LSGG+ QR+++A L + + +Y+ D+P + + L V+ GL+ +
Sbjct: 857 LGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLN-VINGLVDK 915
Query: 791 SKTVIYVTHQVEFLPAADLIL 811
TVI + H ++ + +D I+
Sbjct: 916 GNTVIVIEHNLDVIKTSDWII 936
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 14/119 (11%)
Query: 742 LSGGQKQRIQIARALYQD--ADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRSKTVIYVTH 799
LSGG+ QRI++A + +Y+ D+P + L + + T+I V H
Sbjct: 522 LSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEH 581
Query: 800 QVEFLPAADLILVM------KDGKITQAGKYNDILNSGTDFMVLVGAHQQALSALDSIE 852
+ + AD I+ + G+I +G Y+++L + + GA+ LS +SIE
Sbjct: 582 DEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLRNKDS---ITGAY---LSGRESIE 634
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 32.0 bits (71), Expect = 2.6, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 644 HGMRVAVCGTVGSGKSSLLSCILGE----VPKISGTLK 677
HGM+V + G +GKSSLL+ + G V I+GT +
Sbjct: 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTR 40
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 31.2 bits (69), Expect = 4.1, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 12/104 (11%)
Query: 735 IGERGINLSGGQKQRIQIARALYQ-------DADIYLFDDPFSAVDAHTGSHLFKEVLLG 787
+G LSGG+ QR+++A + Q + L D P +++D S L K +L
Sbjct: 120 LGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDK--ILS 177
Query: 788 LLRSK--TVIYVTHQVEF-LPAADLILVMKDGKITQAGKYNDIL 828
L + ++ +H + L A ++K GK+ +G+ ++L
Sbjct: 178 ALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals A
Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals A
Dimeric Gtpase
Length = 184
Score = 30.8 bits (68), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 1084 KTGIVGRTGSGKSTLIQTLFRIVEPTAG-EIVIDGINISS--IGLHDLRSR 1131
K IVG TGSGK+TL+Q L + + G + GI++ I + D R R
Sbjct: 4 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKR 54
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A
Dimeric Gtpase
Length = 171
Score = 30.4 bits (67), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 1084 KTGIVGRTGSGKSTLIQTLFRIVEPTAG-EIVIDGINISS--IGLHDLRSR 1131
K IVG TGSGK+TL+Q L + + G + GI++ I + D R R
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKR 52
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 30.4 bits (67), Expect = 6.4, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 12/104 (11%)
Query: 735 IGERGINLSGGQKQRIQIARALYQ-------DADIYLFDDPFSAVDAHTGSHLFKEVLLG 787
+G LSGG+ QR+++A + Q + L D P ++D S L K +L
Sbjct: 120 LGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDK--ILS 177
Query: 788 LLRSK--TVIYVTHQVEF-LPAADLILVMKDGKITQAGKYNDIL 828
L + ++ +H + L A ++K GK+ +G+ ++L
Sbjct: 178 ALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 30.4 bits (67), Expect = 6.4, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Query: 735 IGERGINLSGGQKQRIQIARALYQ-------DADIYLFDDPFSAVDAHTGSHLFKEVLLG 787
+G LSGG+ QR+++A + Q + L D+P +++D S L K +
Sbjct: 120 LGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSAL 179
Query: 788 LLRSKTVIYVTHQVEF-LPAADLILVMKDGKITQAGKYNDIL 828
+ ++ +H + L A ++K GK +G+ ++L
Sbjct: 180 CQQGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVL 221
>pdb|2PT7|A Chain A, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|B Chain B, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|C Chain C, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|D Chain D, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|E Chain E, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|F Chain F, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
Length = 330
Score = 30.4 bits (67), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 18/96 (18%)
Query: 645 GMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKLCGTKAYV--AQSPWIQ---SGNIE-- 697
G V VCG GSGK++ + I+ +PK + + T+ V + Q GNI
Sbjct: 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSA 230
Query: 698 -----------DNILFGKPMDREKYDRVLEACSLKK 722
D I+ G+ E YD CS K
Sbjct: 231 DCLKSCLRMRPDRIILGELRSSEAYDFYNVLCSGHK 266
>pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GXO|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
Length = 369
Score = 30.0 bits (66), Expect = 7.7, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 19/86 (22%)
Query: 608 HPRGSSETAIEIVDGNFAWDISSNNPTLRDINLKV-----------------FHGMRVAV 650
H + E + ++ +G W ++ +P R++ + F G AV
Sbjct: 148 HSVRTGEASFDVANGTSFWQLTHEDPKARELFNRAXGSVSLTEAGQVAAAYDFSGAATAV 207
Query: 651 CGTVGSGKSSLLSCILGEVPKISGTL 676
+G G+ SL + +L P + GTL
Sbjct: 208 --DIGGGRGSLXAAVLDAFPGLRGTL 231
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 30.0 bits (66), Expect = 8.9, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 12/104 (11%)
Query: 735 IGERGINLSGGQKQRIQIARALYQ-------DADIYLFDDPFSAVDAHTGSHLFKEVLLG 787
+G LSGG+ QR+++A + Q + L D+P +++D S L K +L
Sbjct: 120 LGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDK--ILS 177
Query: 788 LLRSK--TVIYVTHQVEF-LPAADLILVMKDGKITQAGKYNDIL 828
L + ++ +H + L A ++K GK +G+ ++L
Sbjct: 178 ALSQQGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVL 221
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,030,067
Number of Sequences: 62578
Number of extensions: 1475624
Number of successful extensions: 3517
Number of sequences better than 100.0: 111
Number of HSP's better than 100.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 3098
Number of HSP's gapped (non-prelim): 286
length of query: 1300
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1190
effective length of database: 8,089,757
effective search space: 9626810830
effective search space used: 9626810830
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)