Your job contains 1 sequence.
>000756
MEKNLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRA
FRGRPPELEEKLKKSAKKKKERDPDADAAAASEGTYQPKTKETRAAYEAMLSVIQQQLGG
QPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLVSIGKLITDYQDAG
DAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEEDEEEEEDVAEPNASGAMQ
MGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKILAE
GDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPD
LAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGRDRRGLVDRDADGGWLGQ
RQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKIS
EMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNR
NDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQI
IVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEH
IRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMN
DLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSH
TDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHT
VIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQ
QLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKE
DITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHL
KPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQA
YISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSV
QTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLI
LAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQY
IEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGVLVCVWLN
The BLAST search returned 5 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 000756
(1300 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2037375 - symbol:emb1507 "embryo defective 150... 4998 0. 1
TAIR|locus:2059969 - symbol:AT2G42270 species:3702 "Arabi... 4583 0. 1
UNIPROTKB|O75643 - symbol:SNRNP200 "U5 small nuclear ribo... 3294 0. 3
UNIPROTKB|E1BH78 - symbol:LOC100850262 "Uncharacterized p... 3293 0. 3
ZFIN|ZDB-GENE-081105-64 - symbol:si:ch211-251j10.5 "si:ch... 3283 0. 2
UNIPROTKB|F1LNJ2 - symbol:Ascc3l1 "Protein Ascc3l1" speci... 3281 0. 3
FB|FBgn0263599 - symbol:l(3)72Ab "lethal (3) 72Ab" specie... 3269 0. 3
WB|WBGene00012896 - symbol:snrp-200 species:6239 "Caenorh... 2984 0. 2
UNIPROTKB|Q9U2G0 - symbol:Y46G5A.4 "Putative U5 small nuc... 2984 0. 2
POMBASE|SPAC9.03c - symbol:brr2 "U5 snRNP complex subunit... 2887 0. 3
DICTYBASE|DDB_G0270042 - symbol:ascc3l "U5 small nuclear ... 2870 0. 2
ASPGD|ASPL0000051297 - symbol:AN10194 species:162425 "Eme... 2857 0. 3
GENEDB_PFALCIPARUM|PFD1060w - symbol:PFD1060w "u5 small n... 922 1.9e-246 8
UNIPROTKB|Q8IFP1 - symbol:PFD1060w "U5 small nuclear ribo... 922 1.9e-246 8
UNIPROTKB|F1SU44 - symbol:F1SU44 "Uncharacterized protein... 2093 1.9e-245 2
SGD|S000000974 - symbol:BRR2 "RNA-dependent ATPase RNA he... 2162 3.3e-243 3
CGD|CAL0001532 - symbol:orf19.3098 species:5476 "Candida ... 2145 1.2e-232 3
UNIPROTKB|F6Y2F0 - symbol:ASCC3 "Uncharacterized protein"... 2117 6.0e-227 3
UNIPROTKB|F1NTD6 - symbol:ascc3 "Activating signal cointe... 2145 4.4e-226 2
UNIPROTKB|E2QVY0 - symbol:ASCC3 "Uncharacterized protein"... 2117 5.7e-224 2
UNIPROTKB|E1BNG3 - symbol:ascc3 "Activating signal cointe... 2114 5.1e-223 2
UNIPROTKB|Q8N3C0 - symbol:ASCC3 "Activating signal cointe... 2086 5.5e-222 3
RGD|1307995 - symbol:Ascc3 "activating signal cointegrato... 2090 7.0e-222 3
MGI|MGI:1925237 - symbol:Ascc3 "activating signal cointeg... 2085 3.0e-221 3
FB|FBgn0038344 - symbol:CG5205 species:7227 "Drosophila m... 1960 9.6e-209 2
DICTYBASE|DDB_G0290389 - symbol:ascc3 "activating signal ... 1960 1.2e-207 3
POMBASE|SPBC13G1.10c - symbol:mug81 "ATP-dependent RNA he... 1921 2.0e-198 1
ASPGD|ASPL0000044033 - symbol:AN2482 species:162425 "Emer... 1809 6.2e-197 4
CGD|CAL0003134 - symbol:orf19.3980 species:5476 "Candida ... 1800 4.1e-192 3
UNIPROTKB|G4N5J1 - symbol:MGG_06124 "Activating signal co... 1847 1.4e-190 1
SGD|S000003503 - symbol:SLH1 "Putative RNA helicase relat... 1776 5.2e-190 3
WB|WBGene00013189 - symbol:Y54E2A.4 species:6239 "Caenorh... 1670 8.0e-172 1
UNIPROTKB|H9L1I7 - symbol:SNRNP200 "Uncharacterized prote... 1330 4.0e-164 2
GENEDB_PFALCIPARUM|PF14_0370 - symbol:PF14_0370 "RNA heli... 917 1.0e-116 3
UNIPROTKB|Q8IL78 - symbol:PF14_0370 "DEAD/DEAH box helica... 917 1.0e-116 3
UNIPROTKB|H9L351 - symbol:H9L351 "Uncharacterized protein... 987 1.9e-99 1
UNIPROTKB|C9JAQ9 - symbol:SNRNP200 "U5 small nuclear ribo... 657 9.3e-92 2
UNIPROTKB|H9L1I6 - symbol:SNRNP200 "Uncharacterized prote... 653 1.1e-90 2
UNIPROTKB|H9KZ72 - symbol:SNRNP200 "Uncharacterized prote... 578 1.6e-82 2
RGD|1584010 - symbol:Hfm1 "HFM1, ATP-dependent DNA helica... 819 3.1e-81 1
UNIPROTKB|F1MFR1 - symbol:HFM1 "Uncharacterized protein" ... 805 4.0e-77 1
UNIPROTKB|A2PYH4 - symbol:HFM1 "Probable ATP-dependent DN... 799 3.6e-76 2
UNIPROTKB|E2RA34 - symbol:HFM1 "Uncharacterized protein" ... 801 4.4e-76 2
UNIPROTKB|E2R5U9 - symbol:HFM1 "Uncharacterized protein" ... 801 5.2e-76 2
UNIPROTKB|F1S4E9 - symbol:HFM1 "Uncharacterized protein" ... 790 5.6e-75 2
ZFIN|ZDB-GENE-061207-43 - symbol:hfm1 "HFM1, ATP-dependen... 725 4.6e-69 1
UNIPROTKB|A6NGI5 - symbol:HFM1 "Probable ATP-dependent DN... 726 7.0e-69 1
TAIR|locus:2089144 - symbol:RCK "ROCK-N-ROLLERS" species:... 723 1.8e-68 1
UNIPROTKB|G4N3Z7 - symbol:MGG_05900 "Uncharacterized prot... 664 1.7e-61 1
UNIPROTKB|B4E0P5 - symbol:SNRNP200 "U5 small nuclear ribo... 633 6.2e-61 1
SGD|S000003220 - symbol:HFM1 "Meiosis specific DNA helica... 627 2.9e-56 2
ASPGD|ASPL0000030426 - symbol:AN5514 species:162425 "Emer... 358 7.4e-52 2
UNIPROTKB|F1RYR3 - symbol:LOC100517018 "Uncharacterized p... 537 1.3e-50 1
UNIPROTKB|F1SU36 - symbol:SNRNP200 "Uncharacterized prote... 525 2.5e-49 1
UNIPROTKB|I3LAH4 - symbol:I3LAH4 "Uncharacterized protein... 471 1.5e-43 1
UNIPROTKB|I3LT20 - symbol:LOC100525691 "Uncharacterized p... 443 1.5e-40 1
UNIPROTKB|I3LAA7 - symbol:I3LAA7 "Uncharacterized protein... 335 5.2e-29 1
UNIPROTKB|I3LVA7 - symbol:I3LVA7 "Uncharacterized protein... 324 7.8e-28 1
MGI|MGI:2176740 - symbol:Helq "helicase, POLQ-like" speci... 299 2.4e-22 1
UNIPROTKB|Q8TDG4 - symbol:HELQ "Helicase POLQ-like" speci... 293 1.1e-21 1
ZFIN|ZDB-GENE-040724-232 - symbol:si:rp71-1p14.5 "si:rp71... 297 1.3e-21 1
DICTYBASE|DDB_G0279107 - symbol:DDB_G0279107 "Helicase PO... 306 1.9e-21 2
UNIPROTKB|E9PT19 - symbol:Helq "Protein Helq" species:101... 286 4.3e-21 1
UNIPROTKB|I3L8F4 - symbol:I3L8F4 "Uncharacterized protein... 258 8.6e-21 1
WB|WBGene00021905 - symbol:helq-1 species:6239 "Caenorhab... 291 2.5e-20 2
UNIPROTKB|E1BMC0 - symbol:POLQ "Uncharacterized protein" ... 203 4.6e-20 3
UNIPROTKB|F1NMU1 - symbol:POLQ "Uncharacterized protein" ... 212 5.6e-20 3
UNIPROTKB|F1RVE2 - symbol:HELQ "Uncharacterized protein" ... 288 1.9e-19 2
UNIPROTKB|J9P160 - symbol:HELQ "Uncharacterized protein" ... 285 4.6e-19 2
UNIPROTKB|E2RST3 - symbol:HELQ "Uncharacterized protein" ... 285 5.1e-19 2
UNIPROTKB|E9PSY5 - symbol:Helq "Protein Helq" species:101... 266 5.3e-19 1
UNIPROTKB|O75417 - symbol:POLQ "DNA polymerase theta" spe... 218 8.9e-19 4
UNIPROTKB|E3W980 - symbol:HELQ "Helicase POLQ-like" speci... 247 1.8e-18 2
ZFIN|ZDB-GENE-060503-421 - symbol:helq "helicase, POLQ-li... 248 6.7e-17 1
UNIPROTKB|F1NYH9 - symbol:HELQ "Uncharacterized protein" ... 248 3.4e-15 2
TAIR|locus:2125677 - symbol:AT4G32700 species:3702 "Arabi... 253 4.6e-15 2
UNIPROTKB|D4A4G4 - symbol:Hfm1 "Protein Hfm1" species:101... 223 4.9e-15 1
WB|WBGene00020964 - symbol:polq-1 species:6239 "Caenorhab... 258 5.1e-15 3
ASPGD|ASPL0000070749 - symbol:mtr4 species:162425 "Emeric... 177 1.6e-14 4
UNIPROTKB|Q10701 - symbol:helY "Probable helicase HelY" s... 178 4.3e-14 3
UNIPROTKB|F1PXD9 - symbol:POLQ "Uncharacterized protein" ... 235 1.6e-13 2
ASPGD|ASPL0000004985 - symbol:AN6007 species:162425 "Emer... 181 2.0e-13 3
SGD|S000004390 - symbol:SKI2 "Ski complex component and p... 189 3.7e-13 3
POMBASE|SPAC17H9.02 - symbol:SPAC17H9.02 "TRAMP complex A... 198 7.9e-13 2
ZFIN|ZDB-GENE-010430-5 - symbol:skiv2l "superkiller viral... 183 1.4e-12 3
RGD|1309795 - symbol:Polq "polymerase (DNA directed), the... 232 1.8e-12 2
UNIPROTKB|D4A628 - symbol:Polq "Polymerase (DNA directed)... 232 1.8e-12 2
DICTYBASE|DDB_G0275633 - symbol:DDB_G0275633 "superkiller... 169 1.0e-11 2
POMBASE|SPAC6F12.16c - symbol:mtr4 "ATP-dependent RNA hel... 166 1.1e-11 3
FB|FBgn0039117 - symbol:tst "twister" species:7227 "Droso... 175 2.7e-11 4
TAIR|locus:2026001 - symbol:MTR4 "homolog of yeast MTR4" ... 172 7.7e-11 2
WB|WBGene00016194 - symbol:C28H8.3 species:6239 "Caenorha... 149 8.9e-11 3
UNIPROTKB|G3MYJ7 - symbol:SKIV2L2 "Uncharacterized protei... 165 1.3e-10 3
POMBASE|SPCC550.03c - symbol:SPCC550.03c "Ski complex RNA... 189 1.6e-10 3
UNIPROTKB|Q8IY21 - symbol:DDX60 "Probable ATP-dependent R... 158 1.7e-10 3
TIGR_CMR|SPO_3098 - symbol:SPO_3098 "ATP-dependent helica... 171 1.9e-10 2
FB|FBgn0002899 - symbol:mus301 "mutagen-sensitive 301" sp... 196 2.6e-10 2
UNIPROTKB|J9P0M0 - symbol:DDX60 "Uncharacterized protein"... 159 3.0e-10 2
UNIPROTKB|E2QSY2 - symbol:DDX60 "Uncharacterized protein"... 159 3.0e-10 2
WB|WBGene00008502 - symbol:skih-2 species:6239 "Caenorhab... 181 3.3e-10 3
WARNING: Descriptions of 48 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2037375 [details] [associations]
symbol:emb1507 "embryo defective 1507" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0009793 "embryo development ending in seed dormancy"
evidence=NAS] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0016020
"membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006259 "DNA metabolic process" evidence=RCA] [GO:0007126
"meiosis" evidence=RCA] [GO:0009165 "nucleotide biosynthetic
process" evidence=RCA] [GO:0033044 "regulation of chromosome
organization" evidence=RCA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 EMBL:CP002684 GO:GO:0005829
GO:GO:0005524 GO:GO:0005730 GO:GO:0016020 GO:GO:0003676
GO:GO:0030529 EMBL:AC007369 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 HOGENOM:HOG000157749 KO:K12854 OMA:KWDVLSR
GO:GO:0008026 ProtClustDB:CLSN2679454 IPI:IPI00536616 PIR:E86342
RefSeq:NP_001185050.1 RefSeq:NP_173520.1 UniGene:At.11196
UniGene:At.21273 ProteinModelPortal:Q9SYP1 SMR:Q9SYP1 IntAct:Q9SYP1
STRING:Q9SYP1 PRIDE:Q9SYP1 ProMEX:Q9SYP1 EnsemblPlants:AT1G20960.1
EnsemblPlants:AT1G20960.2 GeneID:838690 KEGG:ath:AT1G20960
TAIR:At1g20960 InParanoid:Q9SYP1 PhylomeDB:Q9SYP1
Genevestigator:Q9SYP1 Uniprot:Q9SYP1
Length = 2171
Score = 4998 (1764.4 bits), Expect = 0., P = 0.
Identities = 976/1305 (74%), Positives = 1095/1305 (83%)
Query: 4 NLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAFRG 63
NLGGGAEAHARFKQYEYRANSSLVLTTD+RPRDTHEPTGEPE+LWGKIDPRSFGDR +G
Sbjct: 3 NLGGGAEAHARFKQYEYRANSSLVLTTDNRPRDTHEPTGEPETLWGKIDPRSFGDRVAKG 62
Query: 64 RPPXXXXXXXXXXXXXXXRDPDADAAAAS---------------EGTYQPKTKETRAAYE 108
RP D S + YQPKTKETRAAYE
Sbjct: 63 RPQELEDKLKKSKKKERDVVDDMVNIRQSKRRRLREESVLTDTDDAVYQPKTKETRAAYE 122
Query: 109 AMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLVS 168
AML +IQ+QLGGQP +IVSGAADEILAVLKNDA +NP+KK EIEKLLN I NH FDQLVS
Sbjct: 123 AMLGLIQKQLGGQPPSIVSGAADEILAVLKNDAFRNPEKKMEIEKLLNKIENHEFDQLVS 182
Query: 169 IGKLITDYQXXXXXXXXXXXXXXXXXXXXMGVAVXXXXXXXXXXXXXXXMVQXXXXXXXX 228
IGKLITD+Q +GVAV MV+
Sbjct: 183 IGKLITDFQEGGDSGGGRANDDEGLDDD-LGVAVEFEENEEDDEESDPDMVEEDDDEEDD 241
Query: 229 XVAEPNASGAMQMXXXXXXXXXXXXXXXXMSLNVQDIDAYWLQRKISQAFDQQIDPQQCQ 288
EP +G MQ+ +LNVQDIDAYWLQRKISQA++QQIDPQQCQ
Sbjct: 242 ---EPTRTGGMQVDAGINDEDAGDANEGT-NLNVQDIDAYWLQRKISQAYEQQIDPQQCQ 297
Query: 289 KLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERK 348
LAEE+LKILAEGDDR VE+KLL HLQ++KFSL+KFLLRNRLKVVWCTRLARA+DQEER
Sbjct: 298 VLAEELLKILAEGDDRVVEDKLLMHLQYEKFSLVKFLLRNRLKVVWCTRLARAEDQEERN 357
Query: 349 KIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASXXXXXXXXX 408
+IEEEM GLGP+L AI++QLHATRATAKER++NL+KSI EEARRLKDE+
Sbjct: 358 RIEEEMRGLGPELTAIVEQLHATRATAKEREENLQKSINEEARRLKDETGGDGGRGRRDV 417
Query: 409 XXXXXXXXWL-GQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKH 467
W+ GQRQ+LDL++LAF QGGL MAN+KCDLP GS R KGY+E+HVP +
Sbjct: 418 ADRDSESGWVKGQRQMLDLESLAFDQGGLLMANKKCDLPPGSYRSHGKGYDEVHVPWVSK 477
Query: 468 KPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNV 527
K +D NEKL+KI+EMP+WAQPAFKGM QLNRVQS+VY +AL A+NILLCAPTGAGKTNV
Sbjct: 478 K-VDRNEKLVKITEMPDWAQPAFKGMQQLNRVQSKVYDTALFKAENILLCAPTGAGKTNV 536
Query: 528 AVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGD 587
A+LTILQQL +NRN DG++NH +YKIVYVAPMKALVAEVVGNLSNRL+ Y V VRELSGD
Sbjct: 537 AMLTILQQLEMNRNTDGTYNHGDYKIVYVAPMKALVAEVVGNLSNRLKDYGVIVRELSGD 596
Query: 588 QTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIV 647
Q+LT ++IEETQIIVTTPEKWDIITRKSGDRTYTQLV+ NRGPVLESIV
Sbjct: 597 QSLTGREIEETQIIVTTPEKWDIITRKSGDRTYTQLVRLLIIDEIHLLHDNRGPVLESIV 656
Query: 648 ARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGI 707
ART+RQIETTKE+IRLVGLSATLPNYEDVALFLRV+L+KGLF FD SYRPVPL QQYIGI
Sbjct: 657 ARTLRQIETTKENIRLVGLSATLPNYEDVALFLRVDLKKGLFKFDRSYRPVPLHQQYIGI 716
Query: 708 QVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFL 767
VKKPLQRFQLMNDLCY+KV+A AGKHQVLIFVHSRKET+KTARAIRDTA+ NDTL RFL
Sbjct: 717 SVKKPLQRFQLMNDLCYQKVLAGAGKHQVLIFVHSRKETSKTARAIRDTAMANDTLSRFL 776
Query: 768 KEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVST 827
KEDSV+R++L SH D+VK++DLKD+LPYGFAIHHAG++RGDR++VE LF GHVQVLVST
Sbjct: 777 KEDSVTRDVLHSHEDIVKNSDLKDILPYGFAIHHAGLSRGDREIVETLFSQGHVQVLVST 836
Query: 828 ATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITG 887
ATLAWGVNLPAHTVIIKGTQ+YNPEKGAW ELSPLD+MQMLGRAGRPQYD +GEGIIITG
Sbjct: 837 ATLAWGVNLPAHTVIIKGTQVYNPEKGAWMELSPLDVMQMLGRAGRPQYDQHGEGIIITG 896
Query: 888 HSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRN 947
+SEL+YYLSLMN+QLPIESQF+SKLADQLNAEIVLGTVQNA+EAC+W+GYTYLYIRM+RN
Sbjct: 897 YSELQYYLSLMNEQLPIESQFISKLADQLNAEIVLGTVQNAREACHWLGYTYLYIRMVRN 956
Query: 948 PALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYY 1007
P LYGLAP+ L +D+ L ERRADL+H+AATILD+NNLVKYDRKSGYFQVTDLGRIASYYY
Sbjct: 957 PTLYGLAPDALAKDVVLEERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLGRIASYYY 1016
Query: 1008 ISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESL 1067
I+HGTI+TYNEHLKPTMGDI+L RLFSLS+EFKYVTVRQDEKMELAKLLDRVPIP+KE+L
Sbjct: 1017 ITHGTIATYNEHLKPTMGDIDLYRLFSLSDEFKYVTVRQDEKMELAKLLDRVPIPIKETL 1076
Query: 1068 EEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKAL 1127
EEPSAKINVLLQAYISQLKLEGLSLTSDMV+ITQSAGRL+RAL+EIVLKRGWAQLAEKAL
Sbjct: 1077 EEPSAKINVLLQAYISQLKLEGLSLTSDMVYITQSAGRLVRALYEIVLKRGWAQLAEKAL 1136
Query: 1128 NLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGR 1187
NLSKMV KRMWSVQTPLRQF+G+ N+ILM+LEKKD WERYYDLS QELGELIR PKMG+
Sbjct: 1137 NLSKMVGKRMWSVQTPLRQFHGLSNDILMQLEKKDLVWERYYDLSAQELGELIRSPKMGK 1196
Query: 1188 TLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEY 1247
LHKF+HQFPK+ L+AHVQPITRTVL VELT+TPDFLWD+K+H YVEPFW+IVEDNDGE
Sbjct: 1197 PLHKFIHQFPKVTLSAHVQPITRTVLNVELTVTPDFLWDEKIHKYVEPFWIIVEDNDGEK 1256
Query: 1248 ILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLG 1292
ILHHEYF+LKKQYI+EDH+L+FTVPI+EPLPPQYF+RVVSDKWLG
Sbjct: 1257 ILHHEYFLLKKQYIDEDHTLHFTVPIFEPLPPQYFVRVVSDKWLG 1301
Score = 832 (297.9 bits), Expect = 1.1e-79, P = 1.1e-79
Identities = 248/876 (28%), Positives = 425/876 (48%)
Query: 448 GSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWA--QPAFKGMTQ----LNRVQS 501
GS+ + + +P K+ P P E L+ + +P A P ++ + Q N VQ+
Sbjct: 1301 GSETVLPVSFRHLILPE-KYPP--PTE-LLDLQPLPVTALRNPNYEILYQDFKHFNPVQT 1356
Query: 502 RVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561
+V+ ++ DN+L+ APTG+GKT A IL+ + +G + ++VY+AP++A
Sbjct: 1357 QVFTVLYNTNDNVLVAAPTGSGKTICAEFAILRN-----HHEGP--DATMRVVYIAPLEA 1409
Query: 562 LVAEVVGNLSNRL-QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTY 620
+ E + + ++V EL+G+ L + +E+ QII++TPEKWD ++R+ R Y
Sbjct: 1410 IAKEQFRIWEGKFGKGLGLRVVELTGETALDLKLLEKGQIIISTPEKWDALSRRWKQRKY 1469
Query: 621 TQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTK-EHIRLVGLSATLPNYEDVALF 679
Q V GPVLE IV+R +R I + IR+V LS +L N +D+ +
Sbjct: 1470 VQQVSLFIVDELHLIGGQHGPVLEVIVSR-MRYISSQVINKIRIVALSTSLANAKDLGEW 1528
Query: 680 LRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVA-GKHQVLI 738
+ + GLF F RPVPL G+ + R Q M Y +V A K ++
Sbjct: 1529 IGAS-SHGLFNFPPGVRPVPLEIHIQGVDISSFEARMQAMTKPTYTAIVQHAKNKKPAIV 1587
Query: 739 FVHSRKETAKTARAIRDTA-LENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGF 797
FV +RK TA + + ++N FL E L + ++ LK+ L +G
Sbjct: 1588 FVPTRKHVRLTAVDLMAYSHMDNPQSPDFLLG---KLEELDPFVEQIREETLKETLCHGI 1644
Query: 798 AIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWT 857
H G++ D+++V LF G +QV V +++L WG L AH V++ GTQ Y+ + + +
Sbjct: 1645 GYLHEGLSSLDQEIVTQLFEAGRIQVCVMSSSLCWGTPLTAHLVVVMGTQYYDGRENSHS 1704
Query: 858 ELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLN 917
+ D++QM+GRA RP D+ G+ +I YY + + P+ESQ L D N
Sbjct: 1705 DYPVPDLLQMMGRASRPLLDNAGKCVIFCHAPRKEYYKKFLYEAFPVESQLQHFLHDNFN 1764
Query: 918 AEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAAT 977
AE+V G ++N ++A +++ +T++Y R+ +NP Y L + L + ++LV +
Sbjct: 1765 AEVVAGVIENKQDAVDYLTWTFMYRRLPQNPNYYNLQGVSHRH---LSDHLSELVENTLS 1821
Query: 978 ILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSE 1037
L+ + ++ + + + +LG IASYYYIS+ TI ++ L L + + +
Sbjct: 1822 DLEASKCIEVEDEMELSPL-NLGMIASYYYISYTTIERFSSLLSSKTKMKGLLEILTSAS 1880
Query: 1038 EFKYVTVRQDEKMELAKLLDRVPIPVKE-SLEEPSAKINVLLQAYISQLKLEGLSLTSDM 1096
E+ + +R E+ + +L++ + +P K N LLQA+ S+ + G +L D
Sbjct: 1881 EYDMIPIRPGEEDTVRRLINHQRFSFENPKCTDPHVKANALLQAHFSRQNIGG-NLAMDQ 1939
Query: 1097 VFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILM 1156
+ SA RLL+A+ +++ GW LA A+ +S+MVT+ MW + L Q ++
Sbjct: 1940 RDVLLSATRLLQAMVDVISSNGWLNLALLAMEVSQMVTQGMWERDSMLLQLPHFTKDLAK 1999
Query: 1157 KLEKKDFA-WERYYDLSPQELGELIRFPKMGRT----LHKFVHQFPKLIL------AAHV 1205
+ ++ E +DL E E KM + +F ++FP + L + V
Sbjct: 2000 RCQENPGKNIETVFDLVEMEDEERQELLKMSDAQLLDIARFCNRFPNIDLTYEIVGSEEV 2059
Query: 1206 QPITRTVLKVELT--------ITP-DFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFML 1256
P L+V L + P D L K E +W++V D +L + L
Sbjct: 2060 NPGKEVTLQVMLERDMEGRTEVGPVDSLRYPKTKE--EGWWLVVGDTKTNQLLAIKRVSL 2117
Query: 1257 KKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLG 1292
+++ + L+FT P EP Y + + D +LG
Sbjct: 2118 QRKVKVK---LDFTAPS-EPGEKSYTLYFMCDSYLG 2149
>TAIR|locus:2059969 [details] [associations]
symbol:AT2G42270 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0009506 "plasmodesma" evidence=IDA]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 GO:GO:0009506 GO:GO:0005524 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003676 EMBL:AC002561 GO:GO:0030529
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 eggNOG:COG1204
HOGENOM:HOG000157749 UniGene:At.12448 UniGene:At.43726 KO:K12854
OMA:RDTHESS GO:GO:0008026 IPI:IPI00539463 PIR:T00936
RefSeq:NP_181756.1 ProteinModelPortal:O48534 SMR:O48534
STRING:O48534 PaxDb:O48534 PRIDE:O48534 EnsemblPlants:AT2G42270.1
GeneID:818828 KEGG:ath:AT2G42270 TAIR:At2g42270 InParanoid:O48534
PhylomeDB:O48534 ProtClustDB:CLSN2679454 ArrayExpress:O48534
Genevestigator:O48534 Uniprot:O48534
Length = 2172
Score = 4583 (1618.4 bits), Expect = 0., P = 0.
Identities = 910/1305 (69%), Positives = 1045/1305 (80%)
Query: 4 NLGGG-AEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAFR 62
NLGGG AE AR KQY Y+ NSSLVL +D R RDTHE +GEPESL G+IDP+SFGDR R
Sbjct: 3 NLGGGGAEEQARLKQYGYKVNSSLVLNSDERRRDTHESSGEPESLRGRIDPKSFGDRVVR 62
Query: 63 GRPPXXXXXXXXXXXXXXXRDPDADAAAAS--------------EGTYQPKTKETRAAYE 108
GRP D A + +G YQPKTKETR A+E
Sbjct: 63 GRPHELDERLNKSKKKKERCDDLVSARESKRVRLREVSVLNDTEDGVYQPKTKETRVAFE 122
Query: 109 AMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLVS 168
ML +IQQQLGGQPL+IV GAADEILAVLKN++VKN +KK EIEKLLN I + VF Q VS
Sbjct: 123 IMLGLIQQQLGGQPLDIVCGAADEILAVLKNESVKNHEKKVEIEKLLNVITDQVFSQFVS 182
Query: 169 IGKLITDYQXXXXXXXXXXXXXXXXXXXXMGVAVXXXXXXXXXXXXXXXMVQXXXXXXXX 228
IGKLITDY+ +GVA+ MVQ
Sbjct: 183 IGKLITDYEEGGDSLSGKASEDGGLDYD-IGVALECEEDDDESDLD---MVQDEKDEEDE 238
Query: 229 XVAEPNASGAMQMXXXXXXXXXXXXXXXXMSLNVQDIDAYWLQRKISQAFDQQIDPQQCQ 288
V E N +G +Q+ SLNV DIDAYWLQRKISQ ++Q+ID Q+CQ
Sbjct: 239 DVVELNKTGVVQVGVAINGEDARQAKEDT-SLNVLDIDAYWLQRKISQEYEQKIDAQECQ 297
Query: 289 KLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERK 348
+LAEE+LKILAEG+DR+VE KLL HLQF+KFSL+KFLL+NRLKVVWCTRLAR +DQEER
Sbjct: 298 ELAEELLKILAEGNDRDVEIKLLEHLQFEKFSLVKFLLQNRLKVVWCTRLARGRDQEERN 357
Query: 349 KIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDE-SASXXXXXXXX 407
+IEEEM+GLG +LAAI+ +LHA RATAKER++ EK I+EEA+ L D+ S
Sbjct: 358 QIEEEMLGLGSELAAIVKELHAKRATAKEREEKREKDIKEEAQHLMDDDSGVDGDRGMRD 417
Query: 408 XXXXXXXXXWL-GQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMK 466
WL GQRQ++DL++LAF QGG N KC+LP+ S R K ++E+HVP +
Sbjct: 418 VDDLDLENGWLKGQRQVMDLESLAFNQGGFTRENNKCELPDRSFRIRGKEFDEVHVPWVS 477
Query: 467 HKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTN 526
K D NEKL+KIS++PEWAQPAF+GM QLNRVQS+VY +AL ADNILLCAPTGAGKTN
Sbjct: 478 KK-FDSNEKLVKISDLPEWAQPAFRGMQQLNRVQSKVYGTALFKADNILLCAPTGAGKTN 536
Query: 527 VAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSG 586
VAVLTIL QL LN N G+FNH NYKIVYVAPMKALVAEVV +LS RL+ + V V+ELSG
Sbjct: 537 VAVLTILHQLGLNMNPGGTFNHGNYKIVYVAPMKALVAEVVDSLSQRLKDFGVTVKELSG 596
Query: 587 DQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESI 646
DQ+LT Q+I+ETQIIVTTPEKWDIITRKSGDRTYTQLV+ NRGPVLESI
Sbjct: 597 DQSLTGQEIKETQIIVTTPEKWDIITRKSGDRTYTQLVRLLIIDEIHLLDDNRGPVLESI 656
Query: 647 VARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIG 706
VART+RQIE+TKEHIRLVGLSATLPN +DVA FLRV+L+ GLF FD SYRPVPL QQYIG
Sbjct: 657 VARTLRQIESTKEHIRLVGLSATLPNCDDVASFLRVDLKNGLFIFDRSYRPVPLGQQYIG 716
Query: 707 IQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRF 766
I VKKPL+RFQLMND+CY+KVVAVAGKHQVLIFVHSRKETAKTARAIRDTA+ NDTL RF
Sbjct: 717 INVKKPLRRFQLMNDICYQKVVAVAGKHQVLIFVHSRKETAKTARAIRDTAMANDTLSRF 776
Query: 767 LKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVS 826
LKEDS SREIL+ ++K+NDLK+LLPYGFAIHHAG+TR DR++VE+ F G++QVL+S
Sbjct: 777 LKEDSQSREILKCLAGLLKNNDLKELLPYGFAIHHAGLTRTDREIVENQFRWGNLQVLIS 836
Query: 827 TATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT 886
TATLAWGVNLPAHTVIIKGTQ+YNPE+G W ELSPLD+MQM+GRAGRPQYD GEGIIIT
Sbjct: 837 TATLAWGVNLPAHTVIIKGTQVYNPERGEWMELSPLDVMQMIGRAGRPQYDQQGEGIIIT 896
Query: 887 GHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLR 946
G+S+L+YYL LMN+QLPIESQF+SKLADQLNAEIVLGT+QNA+EAC+W+GYTYLY+RM+R
Sbjct: 897 GYSKLQYYLRLMNEQLPIESQFISKLADQLNAEIVLGTIQNAREACHWLGYTYLYVRMVR 956
Query: 947 NPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYY 1006
NP LYG++P+ L +D+ L ERRADL+H+AATILD+NNL+KYDRKSG+FQVTDLGRIASYY
Sbjct: 957 NPTLYGVSPDALAKDLLLEERRADLIHSAATILDKNNLIKYDRKSGHFQVTDLGRIASYY 1016
Query: 1007 YISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKES 1066
YISHGTI+ YNE+LKPTM DIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKE+
Sbjct: 1017 YISHGTIAAYNENLKPTMNDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKET 1076
Query: 1067 LEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKA 1126
LE+PSAKINVLLQ YIS+LKLEGLSLTSDMV+ITQSAGRLLRA+FEIVLKRGWAQL++KA
Sbjct: 1077 LEDPSAKINVLLQVYISKLKLEGLSLTSDMVYITQSAGRLLRAIFEIVLKRGWAQLSQKA 1136
Query: 1127 LNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMG 1186
LNLSKMV KRMWSVQTPL QF GIP EILMKLEK D WERYYDLS QELGELI PKMG
Sbjct: 1137 LNLSKMVGKRMWSVQTPLWQFPGIPKEILMKLEKNDLVWERYYDLSSQELGELICNPKMG 1196
Query: 1187 RTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGE 1246
R LHK++HQFPKL LAAHVQPI+R+VL+VELT+TPDF WDDK + YVEPFW+IVEDNDGE
Sbjct: 1197 RPLHKYIHQFPKLKLAAHVQPISRSVLQVELTVTPDFHWDDKANKYVEPFWIIVEDNDGE 1256
Query: 1247 YILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWL 1291
ILHHEYF+ KK+ I+EDH+LNFTVPI EP+PPQYFIRVVSDKWL
Sbjct: 1257 KILHHEYFLFKKRVIDEDHTLNFTVPISEPIPPQYFIRVVSDKWL 1301
Score = 757 (271.5 bits), Expect = 2.6e-71, P = 2.6e-71
Identities = 211/751 (28%), Positives = 375/751 (49%)
Query: 472 PNEKLIKISEMPEWA--QPAFKGMTQ----LNRVQSRVYKSALSSADNILLCAPTGAGKT 525
P +L+ + +P A P+++ + Q N VQ++V+ +++DN+++ APTG+GKT
Sbjct: 1322 PPTELLDLQPLPVMALRNPSYETLYQDFKHFNPVQTQVFTVLYNTSDNVVVAAPTGSGKT 1381
Query: 526 NVAVLTILQQLALNRND-DGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL-QMYDVKVRE 583
I + A+ RN +G S ++VY+AP++A+ E + + + ++V E
Sbjct: 1382 ------ICAEFAILRNHLEGP--DSAMRVVYIAPLEAIAKEQFRDWEKKFGKGLGLRVVE 1433
Query: 584 LSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVL 643
L+G+ L + +E+ QII++TPEKWD ++R+ R Y Q V G VL
Sbjct: 1434 LTGETLLDLKLLEKGQIIISTPEKWDALSRRWKQRKYIQQVSLFIVDELHLIGGQGGQVL 1493
Query: 644 ESIVARTVRQIET-TKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQ 702
E IV+R +R I + IR+V LS +L N +D+ ++ + G+F F + RPVPL
Sbjct: 1494 EVIVSR-MRYISSQVGNKIRIVALSTSLANAKDLGEWIGAS-SCGVFNFPPNVRPVPLEI 1551
Query: 703 QYIGIQVKKPLQRFQLMNDLCYEKVVAVA-GKHQVLIFVHSRKETAKTA-RAIRDTALEN 760
G+ + R Q M Y +V A K ++FV +RK TA I + ++N
Sbjct: 1552 HIHGVDILSFEARMQAMTKPTYTAIVQHAKNKKPAIVFVPTRKHVRLTAVDLIAYSHMDN 1611
Query: 761 DTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGH 820
FL + E L+ + LK+ L +G H G++ D+++V LF G
Sbjct: 1612 MKSPDFLLGNL---EELEPFLIQICEETLKETLRHGIGYLHEGLSNLDQEIVTQLFEAGR 1668
Query: 821 VQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYG 880
+QV V +++L WG L AH V++ GT Y+ + + ++ +++QM+GR RP D G
Sbjct: 1669 IQVCVMSSSLCWGTPLKAHLVVVMGTHFYDGRENSHSDYPISNLLQMMGRGSRPLLDDAG 1728
Query: 881 EGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYL 940
+ +I YY + + LP+ES L D NAE+V ++N ++A +++ ++++
Sbjct: 1729 KCVIFCHAPRKEYYKKFLYEALPVESHLQHFLHDNFNAEVVARVIENKQDAVDYLTWSFM 1788
Query: 941 YIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLG 1000
Y R+ +NP Y L + L + ++LV + L+ + ++ D + + +LG
Sbjct: 1789 YRRLPQNPNYYNLLGVSHRH---LSDHLSELVENTLSDLEVSKCIEIDNELDLSPL-NLG 1844
Query: 1001 RIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVP 1060
IASYYYI++ TI ++ L L + + + E+ + +R E+ + +L++
Sbjct: 1845 MIASYYYINYTTIERFSSLLASKTKMKGLLEILTSASEYDLIPIRPGEEDAVRRLINHQR 1904
Query: 1061 IPVKES-LEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGW 1119
+ +P K + LLQA+ S+ K+ G +L D + SA RLL+A+ +++ G
Sbjct: 1905 FSFQNPRCTDPRVKTSALLQAHFSRQKISG-NLVMDQCEVLLSATRLLQAMVDVISSNGC 1963
Query: 1120 AQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKL-EKKDFAWERYYDLSPQE--- 1175
LA A+ +S+MVT+ MW + L Q ++ + E E +DL E
Sbjct: 1964 LNLALLAMEVSQMVTQGMWDRDSMLLQLPHFTKDLAKRCHENPGNNIETIFDLVEMEDDK 2023
Query: 1176 LGELIRFPKMGRT-LHKFVHQFPKLILAAHV 1205
EL++ + +F ++FP + L +
Sbjct: 2024 RQELLQMSDAQLLDIARFCNRFPNIDLTYEI 2054
>UNIPROTKB|O75643 [details] [associations]
symbol:SNRNP200 "U5 small nuclear ribonucleoprotein 200 kDa
helicase" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;IDA;TAS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0000354 "cis assembly of pre-catalytic
spliceosome" evidence=IC] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0008026 "ATP-dependent helicase
activity" evidence=IDA] [GO:0005682 "U5 snRNP" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0005654 Reactome:REACT_1675 GO:GO:0005682 GO:GO:0003676
Orphanet:791 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 eggNOG:COG1204 HOVERGEN:HBG051896 KO:K12854
OMA:KWDVLSR GO:GO:0008026 GO:GO:0000354 EMBL:AY572488 EMBL:AK024391
EMBL:AK090671 EMBL:AB018331 EMBL:Z70200 EMBL:BC065924 EMBL:BC007577
IPI:IPI00168235 IPI:IPI00420014 RefSeq:NP_054733.2
UniGene:Hs.246112 PDB:2Q0Z PDB:4F91 PDB:4F92 PDB:4F93 PDBsum:2Q0Z
PDBsum:4F91 PDBsum:4F92 PDBsum:4F93 ProteinModelPortal:O75643
SMR:O75643 IntAct:O75643 MINT:MINT-5003904 STRING:O75643
PhosphoSite:O75643 PaxDb:O75643 PeptideAtlas:O75643 PRIDE:O75643
Ensembl:ENST00000323853 GeneID:23020 KEGG:hsa:23020 UCSC:uc002svu.3
CTD:23020 GeneCards:GC02M096940 H-InvDB:HIX0002273 HGNC:HGNC:30859
HPA:HPA029321 MIM:601664 MIM:610359 neXtProt:NX_O75643
PharmGKB:PA164726004 InParanoid:O75643 OrthoDB:EOG4WM4SS
PhylomeDB:O75643 ChiTaRS:SNRNP200 EvolutionaryTrace:O75643
GenomeRNAi:23020 NextBio:43966 ArrayExpress:O75643 Bgee:O75643
CleanEx:HS_SNRNP200 Genevestigator:O75643
GermOnline:ENSG00000144028 Uniprot:O75643
Length = 2136
Score = 3294 (1164.6 bits), Expect = 0., Sum P(3) = 0.
Identities = 630/1033 (60%), Positives = 801/1033 (77%)
Query: 260 LNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKIL-AEGDDREVENKLLYHLQFDK 318
L+ +DIDA+WLQR++S+ +D I QK A+EVL+IL DDRE EN+L+ L F+
Sbjct: 258 LHPRDIDAFWLQRQLSRFYDDAI---VSQKKADEVLEILKTASDDRECENQLVLLLGFNT 314
Query: 319 FSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKER 378
F IK L ++R+ +++CT LA AQ + E+++I +M P+L+ L QLH T KE
Sbjct: 315 FDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEA-DPELSKFLYQLHETE---KED 370
Query: 379 QKNLEKSIREEARRLKDESASXXXXXXXXXXXXXXXXXWLGQRQLLDLDTLAFQQGGLFM 438
E+S RE R+ + ++ L RQ+LDL+ L F QG FM
Sbjct: 371 LIREERSRRERVRQSRMDTDLETMDLDQGGEA-------LAPRQVLDLEDLVFTQGSHFM 423
Query: 439 ANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNR 498
AN++C LP+GS R KGYEE+HVPA+K KP E+L+ + ++P++AQ F+G LNR
Sbjct: 424 ANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKTLNR 483
Query: 499 VQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558
+QS++Y++AL + +N+LLCAPTGAGKTNVA++ +L+++ + N DG+ N ++KI+Y+AP
Sbjct: 484 IQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAP 543
Query: 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDR 618
M++LV E+VG+ RL Y + V EL+GD L +++I TQIIV TPEKWDIITRK G+R
Sbjct: 544 MRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGER 603
Query: 619 TYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVAL 678
TYTQLV+ +RGPVLE++VAR +R IE T+E +RL+GLSATLPNYEDVA
Sbjct: 604 TYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVAT 663
Query: 679 FLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLI 738
FLRV+ KGLFYFDNS+RPVPL Q Y+GI KK ++RFQ+MN++ YEK++ AGK+QVL+
Sbjct: 664 FLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLV 723
Query: 739 FVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFA 798
FVHSRKET KTARAIRD LE DTLG FL+E S S E+L++ + K+ +LKDLLPYGFA
Sbjct: 724 FVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFA 783
Query: 799 IHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTE 858
IHHAGMTR DR LVEDLF D H+QVLVSTATLAWGVNLPAHTVIIKGTQ+Y+PEKG WTE
Sbjct: 784 IHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTE 843
Query: 859 LSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNA 918
L LDI+QMLGRAGRPQYD+ GEGI+IT H EL+YYLSL+NQQLPIESQ VSKL D LNA
Sbjct: 844 LGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNA 903
Query: 919 EIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATI 978
EIVLG VQNAK+A NW+GY YLYIRMLR+P LYG++ + LK D L +RR DLVHTAA +
Sbjct: 904 EIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALM 963
Query: 979 LDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEE 1038
LD+NNLVKYD+K+G FQVT+LGRIAS+YYI++ T+ TYN+ LKPT+ +IEL R+FSLS E
Sbjct: 964 LDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSE 1023
Query: 1039 FKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVF 1098
FK +TVR++EK+EL KLL+RVPIPVKES+EEPSAKINVLLQA+ISQLKLEG +L +DMV+
Sbjct: 1024 FKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMVY 1083
Query: 1099 ITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKL 1158
+TQSAGRL+RA+FEIVL RGWAQL +K LNL KM+ KRMW PLRQF +P E++ K+
Sbjct: 1084 VTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVKKI 1143
Query: 1159 EKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELT 1218
EKK+F +ER YDL+ E+GELIR PKMG+T+HK+VH FPKL L+ H+QPITR+ LKVELT
Sbjct: 1144 EKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKVELT 1203
Query: 1219 ITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLP 1278
ITPDF WD+KVHG E FW++VED D E ILHHEYF+LK +Y +++H + F VP++EPLP
Sbjct: 1204 ITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFEPLP 1263
Query: 1279 PQYFIRVVSDKWL 1291
PQYFIRVVSD+WL
Sbjct: 1264 PQYFIRVVSDRWL 1276
Score = 821 (294.1 bits), Expect = 3.4e-104, Sum P(2) = 3.4e-104
Identities = 223/748 (29%), Positives = 383/748 (51%)
Query: 472 PNEKLIKISEMPEWA--QPAFKGMTQ-----LNRVQSRVYKSALSSADNILLCAPTGAGK 524
P +L+ + +P A AF+ + Q N +Q++V+ + +S DN+ + APTG+GK
Sbjct: 1297 PPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGK 1356
Query: 525 TNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVRE 583
T A IL+ L ++ +G + VY+ PM+AL +V + + Q + KV
Sbjct: 1357 TICAEFAILRMLL--QSSEG-------RCVYITPMEALAEQVYMDWYEKFQDRLNKKVVL 1407
Query: 584 LSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVL 643
L+G+ + + + + II++TPEKWDI++R+ R Q + GPVL
Sbjct: 1408 LTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVL 1467
Query: 644 ESIVARTVRQIETTKEH-IRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQ 702
E I +R +R I + E IR+V LS++L N +DVA +L + F F + RPVPL
Sbjct: 1468 EVICSR-MRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATS-TFNFHPNVRPVPLEL 1525
Query: 703 QYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDT 762
G + R M Y + + K V++FV SRK+T TA I T +
Sbjct: 1526 HIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQ 1585
Query: 763 LGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQ 822
RFL ++++ + + + + LK+ L G H G++ +R+LVE LF G +Q
Sbjct: 1586 RQRFLH--CTEKDLIP-YLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQ 1642
Query: 823 VLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEG 882
V+V++ +L WG+N+ AH VII TQ YN + A+ + D++QM+G A RP D G
Sbjct: 1643 VVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRC 1702
Query: 883 IIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYI 942
+I+ S+ ++ + + LP+ES + D NAEIV T++N ++A +++ +T+LY
Sbjct: 1703 VIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYR 1762
Query: 943 RMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRI 1002
RM +NP Y L + L + ++LV + L+++ + + + + +LG I
Sbjct: 1763 RMTQNPNYYNLQGISHRH---LSDHLSELVEQTLSDLEQSKCISIEDEMDVAPL-NLGMI 1818
Query: 1003 ASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIP 1062
A+YYYI++ TI ++ L L + S + E++ + +R E L +L +VP
Sbjct: 1819 AAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHK 1878
Query: 1063 VKE-SLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQ 1121
+ +P K N+LLQA++S+++L L SD I A RL++A +++ GW
Sbjct: 1879 LNNPKFNDPHVKTNLLLQAHLSRMQLSA-ELQSDTEEILSKAIRLIQACVDVLSSNGWLS 1937
Query: 1122 LAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDL---SPQELGE 1178
A A+ L++MVT+ MWS + L+Q +E + + K E +D+ +E
Sbjct: 1938 PALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGV--ESVFDIMEMEDEERNA 1995
Query: 1179 LIRFPKMG-RTLHKFVHQFPKLILAAHV 1205
L++ + +F +++P + L+ V
Sbjct: 1996 LLQLTDSQIADVARFCNRYPNIELSYEV 2023
Score = 295 (108.9 bits), Expect = 0., Sum P(3) = 0.
Identities = 77/182 (42%), Positives = 102/182 (56%)
Query: 9 AEAHARFKQYEYRANSSLVLTTDSRPRDT---HEPTGEPESLWGKIDPRSFGDRAFRGRP 65
A+ AR QYEY+ANS+LVL D D EPTGE SL GK++ GD+A R +P
Sbjct: 2 ADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTKP 61
Query: 66 PXXXXXXXXXXXXXXXRDPDADAAAA----SEGT-------YQPKTKETRAAYEAMLSVI 114
R D + SEG Y+PKTKETR YE +LS I
Sbjct: 62 QMQEERRAKRRKRDEDRH-DINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI 120
Query: 115 QQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLVSIGKLIT 174
Q LG QP +I+ GAADE+LAVLKN+ +++ +++KEI+ LL + + LV++GK IT
Sbjct: 121 QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKIT 180
Query: 175 DY 176
DY
Sbjct: 181 DY 182
Score = 41 (19.5 bits), Expect = 0., Sum P(3) = 0.
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 1228 KVHGYVEPFWVIVEDNDGEY----ILHHEYFMLKKQYIEEDHSLN 1268
KV G +E I+ N EY I HHE +L++ + H LN
Sbjct: 1841 KVRGLIE----II-SNAAEYENIPIRHHEDNLLRQLAQKVPHKLN 1880
>UNIPROTKB|E1BH78 [details] [associations]
symbol:LOC100850262 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005682 "U5
snRNP" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0008380 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973
GeneTree:ENSGT00640000091272 KO:K12854 OMA:KWDVLSR GO:GO:0008026
CTD:23020 EMBL:DAAA02030116 IPI:IPI00695338 RefSeq:NP_001193092.1
UniGene:Bt.7486 ProteinModelPortal:E1BH78 PRIDE:E1BH78
Ensembl:ENSBTAT00000001130 GeneID:510529 KEGG:bta:510529
NextBio:20869492 Uniprot:E1BH78
Length = 2136
Score = 3293 (1164.3 bits), Expect = 0., Sum P(3) = 0.
Identities = 629/1033 (60%), Positives = 801/1033 (77%)
Query: 260 LNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKIL-AEGDDREVENKLLYHLQFDK 318
L+ +DIDA+WLQR++S+ +D I QK A+EVL+IL DDRE EN+L+ L F+
Sbjct: 258 LHPRDIDAFWLQRQLSRFYDDAI---VSQKKADEVLEILKTASDDRECENQLVLLLGFNT 314
Query: 319 FSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKER 378
F IK L ++R+ +++CT LA AQ + E+++I +M P+L+ L QLH T KE
Sbjct: 315 FDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEA-DPELSKFLYQLHETE---KED 370
Query: 379 QKNLEKSIREEARRLKDESASXXXXXXXXXXXXXXXXXWLGQRQLLDLDTLAFQQGGLFM 438
E+S RE R+ + ++ L RQ+LDL+ L F QG FM
Sbjct: 371 LIREERSRRERVRQSRMDTDLETMDLDQGGEA-------LAPRQVLDLEDLVFTQGSHFM 423
Query: 439 ANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNR 498
AN++C LP+GS R KGYEE+HVPA+K KP E+L+ + ++P++AQ F+G LNR
Sbjct: 424 ANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKTLNR 483
Query: 499 VQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558
+QS++Y++AL + +N+LLCAPTGAGKTNVA++ +L+++ + N DG+ N ++KI+Y+AP
Sbjct: 484 IQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAP 543
Query: 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDR 618
M++LV E+VG+ RL Y + V EL+GD L +++I TQIIV TPEKWDIITRK G+R
Sbjct: 544 MRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGER 603
Query: 619 TYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVAL 678
TYTQLV+ +RGPVLE++VAR +R IE T+E +RL+GLSATLPNYEDVA
Sbjct: 604 TYTQLVRLVILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVAT 663
Query: 679 FLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLI 738
FLRV+ KGLFYFDNS+RPVPL Q Y+GI KK ++RFQ+MN++ YEK++ AGK+QVL+
Sbjct: 664 FLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLV 723
Query: 739 FVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFA 798
FVHSRKET KTARAIRD LE DTLG FL+E S S E+L++ + K+ +LKDLLPYGFA
Sbjct: 724 FVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFA 783
Query: 799 IHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTE 858
IHHAGMTR DR LVEDLF D H+QVLVSTATLAWGVNLPAHTVIIKGTQ+Y+PEKG WTE
Sbjct: 784 IHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTE 843
Query: 859 LSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNA 918
L LDI+QMLGRAGRPQYD+ GEGI+IT H EL+YYLSL+NQQLPIESQ VSKL D LNA
Sbjct: 844 LGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNA 903
Query: 919 EIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATI 978
E+VLG VQNAK+A NW+GY YLYIRMLR+P LYG++ + LK D L +RR DLVHTAA +
Sbjct: 904 EVVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALM 963
Query: 979 LDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEE 1038
LD+NNLVKYD+K+G FQVT+LGRIAS+YYI++ T+ TYN+ LKPT+ +IEL R+FSLS E
Sbjct: 964 LDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSE 1023
Query: 1039 FKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVF 1098
FK +TVR++EK+EL KLL+RVPIPVKES+EEPSAKINVLLQA+ISQLKLEG +L +DMV+
Sbjct: 1024 FKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMVY 1083
Query: 1099 ITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKL 1158
+TQSAGRL+RA+FEIVL RGWAQL +K LNL KM+ KRMW PLRQF +P E++ K+
Sbjct: 1084 VTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVKKI 1143
Query: 1159 EKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELT 1218
EKK+F +ER YDL+ E+GELIR PKMG+T+HK+VH FPKL L+ H+QPITR+ LKVELT
Sbjct: 1144 EKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKVELT 1203
Query: 1219 ITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLP 1278
ITPDF WD+KVHG E FW++VED D E ILHHEYF+LK +Y +++H + F VP++EPLP
Sbjct: 1204 ITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFEPLP 1263
Query: 1279 PQYFIRVVSDKWL 1291
PQYFIRVVSD+WL
Sbjct: 1264 PQYFIRVVSDRWL 1276
Score = 823 (294.8 bits), Expect = 1.9e-104, Sum P(2) = 1.9e-104
Identities = 223/748 (29%), Positives = 381/748 (50%)
Query: 472 PNEKLIKISEMPEWA--QPAFKGMTQ-----LNRVQSRVYKSALSSADNILLCAPTGAGK 524
P +L+ + +P A AF+ + Q N +Q++V+ + +S DN+ + APTG+GK
Sbjct: 1297 PPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGK 1356
Query: 525 TNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVRE 583
T A IL+ L +N +G + VY+ PM+AL +V + + Q KV
Sbjct: 1357 TICAEFAILRMLL--QNSEG-------RCVYITPMEALAEQVYMDWYEKFQDRLSKKVVL 1407
Query: 584 LSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVL 643
L+G+ + + + + +IV+TPEKWDI++R+ R Q + GPVL
Sbjct: 1408 LTGETSTDLKLLGKGSVIVSTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVL 1467
Query: 644 ESIVARTVRQIETTKEH-IRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQ 702
E I +R +R I + E IR+V LS++L N +DVA +L + F F + RPVPL
Sbjct: 1468 EVICSR-MRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATS-TFNFHPNVRPVPLEL 1525
Query: 703 QYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDT 762
G + R M Y + + K V++FV SRK+T TA I T +
Sbjct: 1526 HIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQ 1585
Query: 763 LGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQ 822
RFL ++++ + + + + LK+ L G H G++ +R+LVE LF G +Q
Sbjct: 1586 RQRFLH--CTEKDLIP-YLEKLSDSTLKETLLNGVGYLHEGLSPLERRLVEQLFSSGAIQ 1642
Query: 823 VLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEG 882
V+V++ +L WG+N+ AH VII TQ YN + A+ + D++QM+G A RP D G
Sbjct: 1643 VVVASRSLCWGLNVAAHLVIIMDTQYYNGKTHAYVDYPIYDVLQMVGHANRPLQDDEGRC 1702
Query: 883 IIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYI 942
+I+ S+ ++ + + LP+ES + D NAEIV T++N ++A +++ +T+LY
Sbjct: 1703 VIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYR 1762
Query: 943 RMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRI 1002
RM +NP Y L + L + ++LV + L+++ + + + + +LG I
Sbjct: 1763 RMTQNPNYYNLQGISHRH---LSDHLSELVEQTLSDLEQSKCISVEDEMDVAPL-NLGMI 1818
Query: 1003 ASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIP 1062
A+YYYI++ TI ++ L L + S + E++ + +R E L +L +VP
Sbjct: 1819 AAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDSLLRQLAQKVPHK 1878
Query: 1063 VKE-SLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQ 1121
+ +P K N+LLQA++S+++L L SD I A RL++A +++ GW
Sbjct: 1879 LNNPKFNDPHVKTNLLLQAHLSRMQLSA-ELQSDTEEILSKAIRLIQACVDVLSSNGWLS 1937
Query: 1122 LAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDL---SPQELGE 1178
A A+ L++M T+ MWS + L+Q +E + + K E +D+ +E
Sbjct: 1938 PALAAMELAQMATQAMWSKDSYLKQLPHFTSEHIKRCTDKGV--ESVFDIMEMEDEERNA 1995
Query: 1179 LIRFPKMG-RTLHKFVHQFPKLILAAHV 1205
L++ + +F +++P + L+ V
Sbjct: 1996 LLQLSDSQIADVARFCNRYPNIELSYEV 2023
Score = 295 (108.9 bits), Expect = 0., Sum P(3) = 0.
Identities = 77/182 (42%), Positives = 102/182 (56%)
Query: 9 AEAHARFKQYEYRANSSLVLTTDSRPRDT---HEPTGEPESLWGKIDPRSFGDRAFRGRP 65
A+ AR QYEY+ANS+LVL D D EPTGE SL GK++ GD+A R +P
Sbjct: 2 ADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTKP 61
Query: 66 PXXXXXXXXXXXXXXXRDPDADAAAA----SEGT-------YQPKTKETRAAYEAMLSVI 114
R D + SEG Y+PKTKETR YE +LS I
Sbjct: 62 QMQEERRAKRRKRDEDRH-DINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI 120
Query: 115 QQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLVSIGKLIT 174
Q LG QP +I+ GAADE+LAVLKN+ +++ +++KEI+ LL + + LV++GK IT
Sbjct: 121 QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKIT 180
Query: 175 DY 176
DY
Sbjct: 181 DY 182
Score = 42 (19.8 bits), Expect = 0., Sum P(3) = 0.
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 1228 KVHGYVEPFWVIVEDNDGEY----ILHHEYFMLKKQYIEEDHSLN 1268
KV G +E I+ N EY I HHE +L++ + H LN
Sbjct: 1841 KVRGLIE----II-SNAAEYENIPIRHHEDSLLRQLAQKVPHKLN 1880
>ZFIN|ZDB-GENE-081105-64 [details] [associations]
symbol:si:ch211-251j10.5 "si:ch211-251j10.5"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 ZFIN:ZDB-GENE-081105-64 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
HOVERGEN:HBG051896 HOGENOM:HOG000157749
GeneTree:ENSGT00640000091272 KO:K12854 GO:GO:0008026 EMBL:BX640472
EMBL:CR376723 IPI:IPI00608684 RefSeq:NP_001116729.1
UniGene:Dr.32574 SMR:B0S754 Ensembl:ENSDART00000109885
GeneID:799690 KEGG:dre:799690 NextBio:20933935 Uniprot:B0S754
Length = 2134
Score = 3283 (1160.7 bits), Expect = 0., Sum P(2) = 0.
Identities = 626/1033 (60%), Positives = 797/1033 (77%)
Query: 260 LNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKIL-AEGDDREVENKLLYHLQFDK 318
L+ +DIDA+WLQR++S+ ++ I QK A+EVL+IL DDRE EN+L+ L F+
Sbjct: 257 LHPRDIDAFWLQRQLSRFYNDAI---VSQKKADEVLEILKTASDDRECENQLVLLLGFNT 313
Query: 319 FSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKER 378
F IK L ++R +++CT LA AQ + E++KI +M DL+ +L QL T KE
Sbjct: 314 FDFIKVLRQHRRMILYCTMLASAQSEAEKEKIINKMEA-DQDLSKVLYQLQETE---KED 369
Query: 379 QKNLEKSIREEARRLKDESASXXXXXXXXXXXXXXXXXWLGQRQLLDLDTLAFQQGGLFM 438
E+S RE R+ + + + RQLLDL+ L F QG FM
Sbjct: 370 IIREERSRRERMRKSRVDDLESMDIDHGES---------VSSRQLLDLEDLTFTQGSHFM 420
Query: 439 ANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNR 498
AN++C LP+GS R KGYEE+HVPA+K KP E L+ I ++P++AQ F+G LNR
Sbjct: 421 ANKRCQLPDGSFRKQRKGYEEVHVPALKPKPFGDEETLVGIEKLPKYAQAGFEGFKSLNR 480
Query: 499 VQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558
+QS+++K+ + + +N+L+CAPTGAGKTNVA++ +L+++ + N DG+ N +++KI+Y+AP
Sbjct: 481 IQSKLFKTTMETDENLLVCAPTGAGKTNVALMAMLREIGKHINMDGTINVADFKIIYIAP 540
Query: 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDR 618
M++LV E+VG+ RL Y + V EL+GD L +++I TQIIV TPEKWDIITRK G+R
Sbjct: 541 MRSLVQEMVGSFGKRLASYGIIVSELTGDHQLCKEEINATQIIVCTPEKWDIITRKGGER 600
Query: 619 TYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVAL 678
TYTQLV+ +RGPVLES++ART+R +E T+E +RL+GLSATLPNYEDVA
Sbjct: 601 TYTQLVRLIIIDEIHLLHDDRGPVLESLIARTIRNVELTQEDVRLIGLSATLPNYEDVAT 660
Query: 679 FLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLI 738
LRV+ KGLFYFDNS+RPVPL Q Y+GI KK ++RFQ+MN++ YEK++ AGK+QVL+
Sbjct: 661 CLRVDPSKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLV 720
Query: 739 FVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFA 798
FVHSRKET KTARAIRD LE DTLG FL+E S S E+L++ + K+ +LKDLLPYGFA
Sbjct: 721 FVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFA 780
Query: 799 IHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTE 858
IHHAGMTR DR LVEDLF D H+QVLVSTATLAWGVNLPAHTVIIKGTQ+Y+PEKG WTE
Sbjct: 781 IHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTE 840
Query: 859 LSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNA 918
L LDI+QMLGRAGRPQYDS GEGI+IT H EL+YYLSL+NQQLPIESQ V KLAD LNA
Sbjct: 841 LGALDILQMLGRAGRPQYDSKGEGILITSHGELQYYLSLLNQQLPIESQMVGKLADMLNA 900
Query: 919 EIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATI 978
EIVLG VQNAK+A NW+GYTYLY+RMLRNP LYG++ + D L RR DLVHTAAT+
Sbjct: 901 EIVLGNVQNAKDAVNWLGYTYLYVRMLRNPTLYGVSHDDRSIDPLLERRRMDLVHTAATV 960
Query: 979 LDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEE 1038
L++NNLVKYD++SG FQVTDLGRIAS++YI+H +I TYN+ LKPT+ +IEL R+FSLS E
Sbjct: 961 LEKNNLVKYDKRSGSFQVTDLGRIASHFYITHESIMTYNQLLKPTLSEIELFRVFSLSSE 1020
Query: 1039 FKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVF 1098
F+ +TVR++EK+EL KLL+RVPIPVKES+EEPSAKINVLLQAYISQLKLEG +L +DMV+
Sbjct: 1021 FRNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAYISQLKLEGFALMADMVY 1080
Query: 1099 ITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKL 1158
+TQSAGRL+RA+FEIVL RGWAQL +K LNL KM+ KRMW +PLRQF +P E++ K+
Sbjct: 1081 VTQSAGRLMRAIFEIVLSRGWAQLTDKTLNLCKMIDKRMWQSMSPLRQFRKLPEEVIKKI 1140
Query: 1159 EKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELT 1218
EKK+F +ER YDL+ E+GELIR PKMG+T+HK+VHQFPKL LA H+QPITR+ LKVELT
Sbjct: 1141 EKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHQFPKLDLAVHLQPITRSTLKVELT 1200
Query: 1219 ITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLP 1278
ITPDF WDDK+HG E FW++VED D E +LHHEYF+LK +Y +++H + F VP++EPLP
Sbjct: 1201 ITPDFQWDDKIHGSSEAFWILVEDVDSEVVLHHEYFLLKAKYAQDEHLVTFFVPVFEPLP 1260
Query: 1279 PQYFIRVVSDKWL 1291
PQYFIR+ SD+WL
Sbjct: 1261 PQYFIRIASDRWL 1273
Score = 826 (295.8 bits), Expect = 5.7e-106, Sum P(2) = 5.7e-106
Identities = 244/844 (28%), Positives = 418/844 (49%)
Query: 472 PNEKLIKISEMPEWA--QPAFKGMTQ----LNRVQSRVYKSALSSADNILLCAPTGAGKT 525
P +L+ + +P A AF+ + Q N +Q++V+ + +S DN+ + APTG+GKT
Sbjct: 1294 PPTELLDLQPLPVSALRNGAFESLYQNFPFFNPIQTQVFNAVYNSDDNVFVGAPTGSGKT 1353
Query: 526 NVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQM-YDVKVREL 584
A IL+ L N +G + VY+ PM+AL +V + + Q + KV L
Sbjct: 1354 ICAEFAILRMLL--HNAEG-------RCVYITPMEALAEQVFLDWHQKFQENLNKKVVLL 1404
Query: 585 SGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLE 644
+G+ + + + + IIV+TP+KWDI++R+ R Q V + GPVLE
Sbjct: 1405 TGETSTDLKLLGKGDIIVSTPDKWDILSRRWKQRKNVQNVSLFIIDEVHLIGGDNGPVLE 1464
Query: 645 SIVARTVRQIETTKEH-IRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQ 703
I +R +R I + E IR+V LS++L N +DVA +L + F F + RPVPL
Sbjct: 1465 VICSR-MRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSTT-ATFNFHPNVRPVPLELH 1522
Query: 704 YIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTL 763
G V R M Y ++ + VL+FV SR++T TA I +
Sbjct: 1523 IQGFNVSHTQTRLLSMAKPVYHAIMKHSPSKPVLVFVPSRRQTRLTAIDILTFCAADVVP 1582
Query: 764 GRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQV 823
RFL S ++++ + + LK+ L G H G++ +R++VE LF G +QV
Sbjct: 1583 QRFLH--STEKDLVP-FMENLSDVTLKETLSNGVGYLHEGLSPTERRIVEHLFTSGAIQV 1639
Query: 824 LVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883
+V++ +L WG N+ AH VI+ TQ YN + A+ + D++QM+G+A RP D G +
Sbjct: 1640 VVASRSLCWGTNISAHLVIVMDTQYYNGKIHAYVDYPIYDVLQMVGKANRPLQDDEGRCV 1699
Query: 884 IITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIR 943
I+ S+ ++ + + LP+ES L D NAEIV TV+N ++A +++ +T+LY R
Sbjct: 1700 IMCQGSKKDFFKKFLYEPLPVESHLDHCLHDHFNAEIVTKTVENKQDAVDYLTWTFLYRR 1759
Query: 944 MLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIA 1003
M +NP Y L + L + ++LV L+++ + + + + +LG IA
Sbjct: 1760 MTQNPNYYNLQGMSHRH---LSDHLSELVENTLQDLEQSKCISIEDEMDVAPL-NLGMIA 1815
Query: 1004 SYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPV 1063
+YYYI++ TI ++ L L + S + E+K + +R E L +L +VP +
Sbjct: 1816 AYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYKNIPIRHHEDTLLRQLAQKVPHKL 1875
Query: 1064 KE-SLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQL 1122
+P K N+LLQA++S+++L L SD I A RL++A +++ GW
Sbjct: 1876 NNPKFNDPHVKTNLLLQAHLSRMQLSA-ELQSDTEEILSKAVRLIQACVDVLSSNGWLSP 1934
Query: 1123 AEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGE---L 1179
A A+ L++MVT+ MWS + LRQ +E++ + K E +D+ E + L
Sbjct: 1935 ALAAMELAQMVTQAMWSKDSYLRQLPHFTSELIKRCTDKGV--ESIFDIMEMEDEDRTGL 1992
Query: 1180 IRFPKMG-RTLHKFVHQFPKLILAAHV---------QPITRTV-LKVELTITPDFLWDDK 1228
++ + + +F +++P + L+ V P+ V L+ E +T +
Sbjct: 1993 LQLSDVQVADVARFCNRYPNIELSYEVVDKDDIKSGSPVVVQVQLEREEEVTGPVIAPLF 2052
Query: 1229 VHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSD 1288
E +WV++ D ++ + L+++ L+F P+ Y + +SD
Sbjct: 2053 PQKREEGWWVVIGDPKSNSLISIKRLTLQQK---AKVKLDFVAPVVGV--HNYTLYFMSD 2107
Query: 1289 KWLG 1292
++G
Sbjct: 2108 AYMG 2111
Score = 306 (112.8 bits), Expect = 0., Sum P(2) = 0.
Identities = 77/182 (42%), Positives = 104/182 (57%)
Query: 9 AEAHARFKQYEYRANSSLVLTTDSRPRDT---HEPTGEPESLWGKIDPRSFGDRAFRGRP 65
A+ AR QYEY+ANS+LVL D D EPTGE SL GK++ GDR+ R +P
Sbjct: 2 ADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTKMGDRSQRTKP 61
Query: 66 PXXXXXXXXXXXXXXXRDPDADAAAA----SEG-------TYQPKTKETRAAYEAMLSVI 114
R D + SEG Y+PKTKETR YE +LS I
Sbjct: 62 QMLEERRAKRRKRDEDRH-DINKMKGFTLLSEGIDEMVGIVYKPKTKETRETYEILLSFI 120
Query: 115 QQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLVSIGKLIT 174
Q LG QP +I+ GAADE+LAVLKND +++ ++++E+E+LL P + + LV++GK I+
Sbjct: 121 QAALGDQPRDILCGAADEVLAVLKNDKMRDKERRREVEQLLGPTDDTRYHVLVNLGKKIS 180
Query: 175 DY 176
DY
Sbjct: 181 DY 182
Score = 38 (18.4 bits), Expect = 1.1e-77, Sum P(2) = 1.1e-77
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 138 KNDAVKNPDKKKEIEKLLNPIP 159
+N V+ ++K E++KLL +P
Sbjct: 1022 RNITVRE-EEKLELQKLLERVP 1042
>UNIPROTKB|F1LNJ2 [details] [associations]
symbol:Ascc3l1 "Protein Ascc3l1" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0008380 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973
GeneTree:ENSGT00640000091272 OMA:KWDVLSR GO:GO:0008026
IPI:IPI00562876 PRIDE:F1LNJ2 Ensembl:ENSRNOT00000043895
ArrayExpress:F1LNJ2 Uniprot:F1LNJ2
Length = 2139
Score = 3281 (1160.0 bits), Expect = 0., Sum P(3) = 0.
Identities = 630/1036 (60%), Positives = 801/1036 (77%)
Query: 260 LNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKIL-AEGDDREVENKLLYHLQFDK 318
L+ +DIDA+WLQR++S+ +D I QK A+EVL+IL DDRE EN+L+ L F+
Sbjct: 258 LHPRDIDAFWLQRQLSRFYDDAI---VSQKKADEVLEILKTASDDRECENQLVLLLGFNT 314
Query: 319 FSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKER 378
F IK L ++R+ +++CT LA AQ + E+++I +M P+L+ L QLH T KE
Sbjct: 315 FDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEA-DPELSKFLYQLHETE---KED 370
Query: 379 QKNLEKSIREEARRLKDESASXXXXXXXXXXXXXXXXXWLGQRQLLDLDTLAFQQGGLFM 438
E+S RE R+ + ++ L RQ+LDL+ L F QG FM
Sbjct: 371 LIREERSRRERVRQSRMDTDLETMDLDQGGEA-------LAPRQVLDLEDLVFTQGSHFM 423
Query: 439 ANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNR 498
AN++C LP+GS R KGYEE+HVPA+K KP E+L+ + ++P++AQ F+G LNR
Sbjct: 424 ANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKTLNR 483
Query: 499 VQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558
+QS++Y++AL + +N+LLCAPTGAGKTNVA++ +L+++ + N DG+ N ++KI+Y+AP
Sbjct: 484 IQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAP 543
Query: 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDR 618
M++LV E+VG+ RL Y + V EL+GD L +++I TQIIV TPEKWDIITRK G+R
Sbjct: 544 MRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGER 603
Query: 619 TYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVAL 678
TYTQLV+ +RGPVLE++VAR +R IE T+E +RL+GLSATLPNYEDVA
Sbjct: 604 TYTQLVRLIVLDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVAT 663
Query: 679 FLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLI 738
FLRV+ KGLFYFDNS+RPVPL Q Y+GI KK ++RFQ+MN++ YEK++ AGK+QVL+
Sbjct: 664 FLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLV 723
Query: 739 FVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFA 798
FVHSRKET KTARAIRD LE DTLG FL+E S S E+L++ + K+ +LKDLLPYGFA
Sbjct: 724 FVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFA 783
Query: 799 IHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTE 858
IHHAGMTR DR LVEDLF D H+QVLVSTATLAWGVNLPAHTVIIKGTQ+Y+PEKG WTE
Sbjct: 784 IHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTE 843
Query: 859 LSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNA 918
L LDI+QMLGRAGRPQYD+ GEGI+IT H EL+YYLSL+NQQLPIESQ VSKL D LNA
Sbjct: 844 LGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNA 903
Query: 919 EIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATI 978
EIVLG VQNAK+A NW+GY YLYIRMLR+P LYG++ + LK D L +RR DLVHTAA +
Sbjct: 904 EIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALM 963
Query: 979 LDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEE 1038
LD+NNLVKYD+K+G FQVT+LGRIAS+YYI++ T+ TYN+ LKPT+ +IEL R+FSLS E
Sbjct: 964 LDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSE 1023
Query: 1039 FKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVF 1098
FK +TVR++EK+EL KLL+RVPIPVKES+EEPSAKINVLLQA+ISQLKLEG +L +DMV+
Sbjct: 1024 FKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMVY 1083
Query: 1099 ITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKL 1158
+TQSAGRL+RA+FEIVL RGWAQL +K LNL KM+ KRMW PLRQF +P E++ K+
Sbjct: 1084 VTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVKKI 1143
Query: 1159 EKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELT 1218
EKK+F +ER YDL+ E+GELIR PKMG+T+HK+VH FPKL L+ H+QPITR+ LKVELT
Sbjct: 1144 EKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKVELT 1203
Query: 1219 ITPDFLWDDK---VHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYE 1275
ITPDF WD+K VHG E FW++VED D E ILHHEYF+LK +Y +++H + F VP++E
Sbjct: 1204 ITPDFQWDEKARLVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFE 1263
Query: 1276 PLPPQYFIRVVSDKWL 1291
PLPPQYFIRVVSD+WL
Sbjct: 1264 PLPPQYFIRVVSDRWL 1279
Score = 826 (295.8 bits), Expect = 1.7e-104, Sum P(2) = 1.7e-104
Identities = 224/748 (29%), Positives = 383/748 (51%)
Query: 472 PNEKLIKISEMPEWA--QPAFKGMTQ-----LNRVQSRVYKSALSSADNILLCAPTGAGK 524
P +L+ + +P A AF+ + Q N +Q++V+ + +S DN+ + APTG+GK
Sbjct: 1300 PPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGK 1359
Query: 525 TNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVRE 583
T A IL+ L +N +G + VY+ PM+AL +V + + Q + KV
Sbjct: 1360 TICAEFAILRMLL--QNSEG-------RCVYITPMEALAEQVYMDWYEKFQDRLNKKVVL 1410
Query: 584 LSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVL 643
L+G+ + + + + II++TPEKWDI++R+ R Q + GPVL
Sbjct: 1411 LTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVL 1470
Query: 644 ESIVARTVRQIETTKEH-IRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQ 702
E I +R +R I + E IR+V LS++L N +DVA +L + F F + RPVPL
Sbjct: 1471 EVICSR-MRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATS-TFNFHPNVRPVPLEL 1528
Query: 703 QYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDT 762
G + R M Y + + K V++FV SRK+T TA I T +
Sbjct: 1529 HIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQ 1588
Query: 763 LGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQ 822
RFL ++++ + + + + LK+ L G H G++ +R+LVE LF G +Q
Sbjct: 1589 RQRFLH--CTEKDLIP-YLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQ 1645
Query: 823 VLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEG 882
V+V++ +L WG+N+ AH VII TQ YN + A+ + D++QM+G A RP D G
Sbjct: 1646 VVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRC 1705
Query: 883 IIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYI 942
+I+ S+ ++ + + LP+ES + D NAEIV T++N ++A +++ +T+LY
Sbjct: 1706 VIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYR 1765
Query: 943 RMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRI 1002
RM +NP Y L + L + ++LV + L+++ + + + + +LG I
Sbjct: 1766 RMTQNPNYYNLQGISHRH---LSDHLSELVEQTLSDLEQSKCISIEDEMDVAPL-NLGMI 1821
Query: 1003 ASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIP 1062
A+YYYI++ TI ++ L L + S + E++ + +R E L +L +VP
Sbjct: 1822 AAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHK 1881
Query: 1063 VKE-SLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQ 1121
+ +P K N+LLQA++S+++L L SD I A RL++A +++ GW
Sbjct: 1882 LNNPKFNDPHVKTNLLLQAHLSRMQLSA-ELQSDTEEILSKAIRLIQACVDVLSSNGWLS 1940
Query: 1122 LAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDL---SPQELGE 1178
A A+ L++MVT+ MWS + L+Q +E + + K E +D+ +E
Sbjct: 1941 PALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGV--ESVFDIMEMEDEERNA 1998
Query: 1179 LIRFPKMG-RTLHKFVHQFPKLILAAHV 1205
L++ + +F +++P + L+ V
Sbjct: 1999 LLQLTDSQIADVARFCNRYPNIELSYEV 2026
Score = 292 (107.8 bits), Expect = 0., Sum P(3) = 0.
Identities = 76/182 (41%), Positives = 102/182 (56%)
Query: 9 AEAHARFKQYEYRANSSLVLTTDSRPRDT---HEPTGEPESLWGKIDPRSFGDRAFRGRP 65
A+ AR QYEY+ANS+LVL D D EPTGE SL GK++ GD+A R +P
Sbjct: 2 ADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTKP 61
Query: 66 PXXXXXXXXXXXXXXXRDPDADAAAA----SEGT-------YQPKTKETRAAYEAMLSVI 114
R D + SEG Y+PKTKETR YE +LS I
Sbjct: 62 QMQEERRAKRRKRDEDRH-DINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI 120
Query: 115 QQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLVSIGKLIT 174
Q LG QP +I+ GAADE+LAVLKN+ +++ ++++EI+ LL + + LV++GK IT
Sbjct: 121 QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRREIDLLLGQTDDTRYHVLVNLGKKIT 180
Query: 175 DY 176
DY
Sbjct: 181 DY 182
Score = 41 (19.5 bits), Expect = 0., Sum P(3) = 0.
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 1228 KVHGYVEPFWVIVEDNDGEY----ILHHEYFMLKKQYIEEDHSLN 1268
KV G +E I+ N EY I HHE +L++ + H LN
Sbjct: 1844 KVRGLIE----II-SNAAEYENIPIRHHEDNLLRQLAQKVPHKLN 1883
>FB|FBgn0263599 [details] [associations]
symbol:l(3)72Ab "lethal (3) 72Ab" species:7227 "Drosophila
melanogaster" [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=ISS] [GO:0005682 "U5 snRNP" evidence=ISS] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0007067 "mitosis" evidence=IMP]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014296
GO:GO:0007067 GO:GO:0003676 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 GeneTree:ENSGT00640000091272 KO:K12854 OMA:KWDVLSR
GO:GO:0004004 GO:GO:0000381 EMBL:BT016121 EMBL:AY069270
RefSeq:NP_648818.3 UniGene:Dm.973 ProteinModelPortal:Q9VUV9
SMR:Q9VUV9 IntAct:Q9VUV9 STRING:Q9VUV9 PaxDb:Q9VUV9 PRIDE:Q9VUV9
EnsemblMetazoa:FBtr0075527 GeneID:39737 KEGG:dme:Dmel_CG5931
FlyBase:FBgn0036548 InParanoid:Q9VUV9 OrthoDB:EOG4S4MWW
PhylomeDB:Q9VUV9 GenomeRNAi:39737 NextBio:815125 Bgee:Q9VUV9
GermOnline:CG5931 Uniprot:Q9VUV9
Length = 2142
Score = 3269 (1155.8 bits), Expect = 0., Sum P(3) = 0.
Identities = 624/1011 (61%), Positives = 782/1011 (77%)
Query: 283 DPQQCQKLAEEVLKILAEG-DDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARA 341
D Q A +VLKIL + DDR+ EN+L+ L +D F IK L NR V++CT LA A
Sbjct: 283 DAMVSQSKAADVLKILKDAADDRDCENQLVLLLGYDCFDFIKQLKLNRQMVLYCTMLASA 342
Query: 342 QDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASXX 401
Q ER++I E+M G LA IL QL T K + E+ ++R K ++
Sbjct: 343 QTDSERQRIREKMRG-NSALAKILRQLD----TGKSEDQ--EEGEARGSKRGKGDAEDGG 395
Query: 402 XXXXXXXXXXXXXXXWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIH 461
G RQLL+L+ +AF QG FMAN++C LP+GS R KGYEE+H
Sbjct: 396 AAAAGQVA---------GVRQLLELEEMAFTQGSHFMANKRCQLPDGSYRKQRKGYEEVH 446
Query: 462 VPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTG 521
VPA+K P D NE+L + ++P++ QP F+G LNR+QSR+YK+AL S +N+LLCAPTG
Sbjct: 447 VPALKPVPFDANEELQPVDKLPKYVQPVFEGFKTLNRIQSRLYKAALDSDENMLLCAPTG 506
Query: 522 AGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKV 581
AGKTNVA+LT+++++ + N+DG+ N ++KI+YVAPMK+LV E+VGN RL Y++ V
Sbjct: 507 AGKTNVALLTMMREIGKHINEDGTINAQDFKIIYVAPMKSLVQEMVGNFGRRLACYNLTV 566
Query: 582 RELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXXNRGP 641
EL+GD LTR+QI TQ+IV TPEKWDIITRK G+RT+ LV+ RGP
Sbjct: 567 SELTGDHQLTREQIAATQVIVCTPEKWDIITRKGGERTFVSLVRLVIIDEIHLLHDERGP 626
Query: 642 VLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLS 701
VLE++VART+R IETT+E +RLVGLSATLPNY+DVA FLRV +KGLFYFDNSYRPV L
Sbjct: 627 VLEALVARTIRNIETTQEEVRLVGLSATLPNYQDVATFLRVKPDKGLFYFDNSYRPVSLE 686
Query: 702 QQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALEND 761
QQYIG+ KK L+RFQ+MN++ YEK + AG++QVL+FVHSRKET KTARA+RD LE D
Sbjct: 687 QQYIGVTEKKALKRFQVMNEIVYEKTMEHAGRNQVLVFVHSRKETGKTARAVRDMCLEQD 746
Query: 762 TLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHV 821
TLG FLKE S S E+L++ + VK+ +LK+LLPYGFAIHHAGMTR DR LVEDLF D H+
Sbjct: 747 TLGSFLKEGSASMEVLRTEAEQVKNTELKELLPYGFAIHHAGMTRVDRTLVEDLFADRHI 806
Query: 822 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGE 881
QVLVSTATLAWGVNLPAHTVIIKGTQ+YNPEKG W ELS LD++QMLGRAGRPQYD+ GE
Sbjct: 807 QVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGRWVELSALDVLQMLGRAGRPQYDTKGE 866
Query: 882 GIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLY 941
GI+IT HSEL++YLSL+NQQLPIESQF+SKL D LNAEIVLGTVQ+ ++A NW+GYTYLY
Sbjct: 867 GILITNHSELQFYLSLLNQQLPIESQFISKLPDMLNAEIVLGTVQHLQDAVNWLGYTYLY 926
Query: 942 IRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGR 1001
IRMLRNP LYG++ + +K D L + RADL+HTAA L+R+ L+KYDRK+G+FQVTDLGR
Sbjct: 927 IRMLRNPTLYGVSHDAIKADPLLEQHRADLLHTAACCLERSGLIKYDRKTGHFQVTDLGR 986
Query: 1002 IASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPI 1061
IAS+YY++H T+ TYN+ LK T+ +IEL R+FSLS EF++++VR++EK+EL KL++RVPI
Sbjct: 987 IASHYYLTHETMLTYNQLLKQTLSEIELFRVFSLSSEFRHISVREEEKLELQKLMERVPI 1046
Query: 1062 PVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQ 1121
P+KES+EE SAK+NVLLQAYISQLKLEG +L SDMVFITQSA RL+RA+FEIVL RGWAQ
Sbjct: 1047 PIKESIEEHSAKVNVLLQAYISQLKLEGFALMSDMVFITQSAARLMRAIFEIVLTRGWAQ 1106
Query: 1122 LAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIR 1181
LA+K L L KM+ +RMW TPLRQF +P+EI KLEKK F W R YDL P ELGELIR
Sbjct: 1107 LADKTLTLCKMIDRRMWQSMTPLRQFKKMPDEIAKKLEKKHFPWGRLYDLEPHELGELIR 1166
Query: 1182 FPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVE 1241
PK+G+T+HKFVHQFPKL L+ H+QPITR L+VELTITPDF WD+KVHG E FWV++E
Sbjct: 1167 VPKLGKTIHKFVHQFPKLELSTHIQPITRGTLRVELTITPDFQWDEKVHGQSEGFWVLIE 1226
Query: 1242 DNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLG 1292
D D E ILHHE+F+LK++Y +++H L F VP++EPLPPQYF+R+VSD+W+G
Sbjct: 1227 DVDSELILHHEFFLLKQKYSQDEHQLKFFVPVFEPLPPQYFLRIVSDRWIG 1277
Score = 852 (305.0 bits), Expect = 8.9e-128, Sum P(3) = 8.9e-128
Identities = 245/857 (28%), Positives = 418/857 (48%)
Query: 465 MKHKPLDPNEKLIKISEMPEWA--QPAFKGM-----TQLNRVQSRVYKSALSSADNILLC 517
+ K + P E L+ + +P A QP F+ Q N +Q++V+ + +S +N+ +
Sbjct: 1291 LPEKNMPPTE-LLDLQPLPISALRQPKFESFYSQRFPQFNPIQTQVFNAVYNSDENVFVG 1349
Query: 518 APTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMY 577
APTG+GK +A I++ S+ + VY+ +AL V + ++
Sbjct: 1350 APTGSGKMTIAEFAIMRLFT---------TQSDARCVYLVSEEALADLVFADWHSKFGSL 1400
Query: 578 DVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXX 637
D+KV +L+G+ + I + Q+++TT +KWD+++R+ R QLV
Sbjct: 1401 DIKVVKLTGETGTDLKLIAKGQLVITTADKWDVLSRRWKQRKNVQLVNLFIVDELQLVGG 1460
Query: 638 NRGPVLESIVARTVRQIETTKE-HIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYR 696
GPVLE + +R +R I + E IR+V LSA+L + DVA +L N F F S R
Sbjct: 1461 EEGPVLEIVCSR-MRYISSQIEKQIRIVALSASLTDARDVAQWLGCN-PNATFNFHPSVR 1518
Query: 697 PVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDT 756
P+PL G V R M+ Y ++ + V++FV SRK+ TA +
Sbjct: 1519 PIPLELHIQGYNVTHNATRIATMSKPVYNAILKYSAHKPVIVFVSSRKQARLTAIDVLTY 1578
Query: 757 ALENDTLGRFLK-EDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDL 815
A + RF E+ + L+ TD LK+ L G A H G++ D +LVE L
Sbjct: 1579 AASDLQPNRFFHAEEEDIKPFLERMTDKT----LKETLAQGVAYLHEGLSASDHRLVEQL 1634
Query: 816 FGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQ 875
F G VQV V + L WG+++ AH VII TQ YN + ++ + D++QM+GRA RP
Sbjct: 1635 FDSGAVQVAVISRDLCWGMSISAHLVIIMDTQFYNGKNHSYEDYPITDVLQMIGRANRPN 1694
Query: 876 YDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWI 935
D+ + +++ S+ ++ +N+ LPIES ++ D NAE+V T++N ++A +++
Sbjct: 1695 EDADAKCVLMCQSSKKDFFKKFINEPLPIESHLDHRMHDHFNAEVVTKTIENKQDAVDYL 1754
Query: 936 GYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQ 995
+T+LY R+ +NP Y L + L + ++LV + L+++ + +
Sbjct: 1755 TWTFLYRRLTQNPNYYNLQGVTHRH---LSDHLSELVENTLSDLEQSKCISVEDDMDTLP 1811
Query: 996 VTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKL 1055
+ +LG IA+YYYI++ TI ++ L L + S + E++ V VR E+ L L
Sbjct: 1812 L-NLGMIAAYYYINYTTIELFSLSLNSKTKVRGLLEIISSAAEYEDVVVRHHEEQVLRTL 1870
Query: 1056 LDRVPIPV---KES---LEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRA 1109
R+P + E+ +P K N+LLQA++S+L+L G L D I A RL++A
Sbjct: 1871 SQRLPNKLTGPNETAPKFNDPHIKTNLLLQAHLSRLQL-GPELQGDTEQILSKAIRLIQA 1929
Query: 1110 LFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYY 1169
+++ GW A A+ L++MVT+ MWS + L+Q EI+ + +K E +
Sbjct: 1930 CVDVLSSNGWLSPAVAAMELAQMVTQAMWSKDSYLKQLPHFSPEIVKRCTEKKI--ETVF 1987
Query: 1170 D---LSPQELGELIRFPKMGRT-LHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLW 1225
D L ++ L++ + + +F +++P + L V R + +
Sbjct: 1988 DIMELEDEDRTRLLQLSDLQMADVARFCNRYPNIELNYEVVDKDRINSGSTVNVVVQLER 2047
Query: 1226 DDKVHG-YVEPF---------WVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYE 1275
+D+V G + PF WV++ D +L + L+++ L+F P
Sbjct: 2048 EDEVTGPVIAPFFPQKREEGWWVVIGDPKTNSLLSIKRLTLQQK---AKVKLDFVAP--S 2102
Query: 1276 PLPPQYFIRVVSDKWLG 1292
P Y + +SD +LG
Sbjct: 2103 PGKHDYTLYYMSDSYLG 2119
Score = 314 (115.6 bits), Expect = 0., Sum P(3) = 0.
Identities = 81/182 (44%), Positives = 105/182 (57%)
Query: 9 AEAHARFKQYEYRANSSLVLTTD----SRPRDTHEPTGEPESLWGKIDPRSFGDRAFRGR 64
A+A AR QYEY+ANS+LVL D RPR E TGE SL GK+D GDR R +
Sbjct: 2 ADAAARQLQYEYKANSNLVLQADVRLIERPR-RDEATGEVCSLVGKLDGTRMGDRYQRTK 60
Query: 65 PPXXXXXXXXXXXXXXXR---DPDADAAAASEG-------TYQPKTKETRAAYEAMLSVI 114
P + + A SEG Y+PKT+ETR YE +LS I
Sbjct: 61 PEKTEERKVKRQKRDEAQYDFERMKGATLLSEGIDEMVGIVYRPKTQETRQTYEVLLSFI 120
Query: 115 QQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLVSIGKLIT 174
Q+ LG QP +I+ GAADEILAVLKND +K+ ++KK+I+ LL + + F LV++GK IT
Sbjct: 121 QEALGDQPRDILCGAADEILAVLKNDRLKDRERKKDIDSLLGAVTDERFALLVNLGKKIT 180
Query: 175 DY 176
D+
Sbjct: 181 DF 182
Score = 211 (79.3 bits), Expect = 0., Sum P(3) = 0.
Identities = 54/120 (45%), Positives = 72/120 (60%)
Query: 259 SLNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKILAEG-DDREVENKLLYHLQFD 317
SL+ DIDAYWLQR +S+ + D Q A +VLKIL + DDR+ EN+L+ L +D
Sbjct: 262 SLHPLDIDAYWLQRCLSKFYK---DAMVSQSKAADVLKILKDAADDRDCENQLVLLLGYD 318
Query: 318 KFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKE 377
F IK L NR V++CT LA AQ ER++I E+M G LA IL QL ++ +E
Sbjct: 319 CFDFIKQLKLNRQMVLYCTMLASAQTDSERQRIREKMRG-NSALAKILRQLDTGKSEDQE 377
Score = 38 (18.4 bits), Expect = 0., Sum P(2) = 0.
Identities = 16/74 (21%), Positives = 29/74 (39%)
Query: 82 RDPDADAAAASEGTYQPKTKETRAAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDA 141
RD DA E A E + ++++ PL+I + L+ DA
Sbjct: 226 RDDDAQDEG-EEARIDHTLHAENLANEEAANNVKKERSLHPLDIDAYWLQRCLSKFYKDA 284
Query: 142 VKNPDKKKEIEKLL 155
+ + K ++ K+L
Sbjct: 285 MVSQSKAADVLKIL 298
>WB|WBGene00012896 [details] [associations]
symbol:snrp-200 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0018991
"oviposition" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0008406 "gonad development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040007 GO:GO:0018991 GO:GO:0016477 GO:GO:0008406
GO:GO:0002119 GO:GO:0008380 GO:GO:0006397 GO:GO:0005681
GO:GO:0003676 GO:GO:0042127 GO:GO:0007281 GO:GO:0040020
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 eggNOG:COG1204
HOGENOM:HOG000157749 GeneTree:ENSGT00640000091272 KO:K12854
OMA:KWDVLSR GO:GO:0008026 EMBL:AL110485 RefSeq:NP_496710.1
ProteinModelPortal:Q9U2G0 SMR:Q9U2G0 IntAct:Q9U2G0
MINT:MINT-1062451 STRING:Q9U2G0 PaxDb:Q9U2G0
EnsemblMetazoa:Y46G5A.4 GeneID:174901 KEGG:cel:CELE_Y46G5A.4
UCSC:Y46G5A.4 CTD:174901 WormBase:Y46G5A.4 InParanoid:Q9U2G0
NextBio:885976 Uniprot:Q9U2G0
Length = 2145
Score = 2984 (1055.5 bits), Expect = 0., Sum P(2) = 0.
Identities = 569/1011 (56%), Positives = 746/1011 (73%)
Query: 283 DPQQCQKLAEEVLKILAEG-DDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARA 341
DP Q+ EV+ IL DDR+ EN+L+ L FD+F IK L +NRL +++CT L +A
Sbjct: 275 DPLIAQQKQTEVIGILKNAADDRDAENQLVLLLGFDQFEFIKCLRQNRLMILYCTLLRQA 334
Query: 342 QDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASXX 401
+++ER +IE++M P+L IL L T + + +EKS R+ + K +A+
Sbjct: 335 -NEKERLQIEDDMRSR-PELHPILALLQETDEGSVVQ---VEKSKRDAEKSKKAATAANE 389
Query: 402 XXXXXXXXXXXXXXXWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIH 461
W R++LDL+ L F QG M+N++C+LP+GS R K YEEIH
Sbjct: 390 AISAGQ---------WQAGRKMLDLNDLTFSQGSHLMSNKRCELPDGSYRRQKKSYEEIH 440
Query: 462 VPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTG 521
VPA+K +P EKL+ +SE+P+WAQPAF G LNR+QSR+ SAL S +++LLCAPTG
Sbjct: 441 VPALKPRPFAEGEKLVSVSELPKWAQPAFDGYKSLNRIQSRLCDSALRSKEHLLLCAPTG 500
Query: 522 AGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKV 581
AGKTNVA+LT+LQ++ + +DGS +KIVY+APMK+LV E+VG+ S RL + + V
Sbjct: 501 AGKTNVALLTMLQEIGNHLAEDGSVKLDEFKIVYIAPMKSLVQEMVGSFSKRLAPFGITV 560
Query: 582 RELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXXNRGP 641
E++GD ++++Q TQ+IV TPEK+D++TRK G+R Y Q+V+ +RGP
Sbjct: 561 GEMTGDAQMSKEQFMATQVIVCTPEKYDVVTRKGGERAYNQMVRLLIIDEIHLLHDDRGP 620
Query: 642 VLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLS 701
VLESIV RT+RQ+E + RLVGLSATLPNY+DVA FLRV E L +FDNSYRPVPL
Sbjct: 621 VLESIVVRTIRQMEQNHDECRLVGLSATLPNYQDVATFLRVKPEH-LHFFDNSYRPVPLE 679
Query: 702 QQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALEND 761
QQYIG+ KK L+RFQ MN++ Y+K++ AGK QVL+FVHSRKETAKTA+AIRD LE D
Sbjct: 680 QQYIGVTEKKALKRFQAMNEVVYDKIMEHAGKSQVLVFVHSRKETAKTAKAIRDACLEKD 739
Query: 762 TLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHV 821
TL F++E S S EIL++ + K+ DLKDLLPYGFAIHHAGM R DR LVEDLF D H+
Sbjct: 740 TLSAFMREGSASTEILRTEAEQAKNLDLKDLLPYGFAIHHAGMNRVDRTLVEDLFADRHI 799
Query: 822 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGE 881
QVL STATLAWGVNLPAHTVIIKGTQIYNPEKG WTEL LDIMQMLGRAGRPQYD GE
Sbjct: 800 QVLFSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWTELGALDIMQMLGRAGRPQYDDRGE 859
Query: 882 GIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLY 941
GI+IT HSEL+YYLSLMNQQLP+ESQ VS+L D LNAE+VLGTV + EA NW+GYT+L+
Sbjct: 860 GILITNHSELQYYLSLMNQQLPVESQMVSRLTDMLNAEVVLGTVSSVSEATNWLGYTFLF 919
Query: 942 IRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGR 1001
+RML+NP LYG+ E + D L +RRADL+HTA +LD+ L+KYD++SG Q T+LGR
Sbjct: 920 VRMLKNPTLYGITHEQARADPLLEQRRADLIHTACVLLDKAGLIKYDKRSGIIQATELGR 979
Query: 1002 IASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPI 1061
IAS++Y ++ ++ TYN+ L T DI+L R+FS+S EFK ++VR +EK+EL K+ + PI
Sbjct: 980 IASHFYCTYESMQTYNKLLVETCSDIDLFRIFSMSSEFKLLSVRDEEKLELQKMAEHAPI 1039
Query: 1062 PVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQ 1121
P+KE+L+E SAK NVLLQAYISQLKLEG +L +DMVF+ QSAGRL RALFEIVL RGWA
Sbjct: 1040 PIKENLDEASAKTNVLLQAYISQLKLEGFALQADMVFVAQSAGRLFRALFEIVLWRGWAG 1099
Query: 1122 LAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIR 1181
LA+K L L KMVT+R W PL QF IP+E++ ++KK+++++R YDL +LG+LI+
Sbjct: 1100 LAQKVLTLCKMVTQRQWGSLNPLHQFKKIPSEVVRSIDKKNYSFDRLYDLDQHQLGDLIK 1159
Query: 1182 FPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVE 1241
PKMG+ L KF+ QFPKL + +QPITRT +++ELTITPDF WD+KVHG E FW+ +E
Sbjct: 1160 MPKMGKPLFKFIRQFPKLEMTTLIQPITRTTMRIELTITPDFKWDEKVHGSAEGFWIFIE 1219
Query: 1242 DNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLG 1292
D DGE ILHHE+F+LK+++ ++H + VP+++P+PP Y++R+VSD+W+G
Sbjct: 1220 DTDGEKILHHEFFLLKQKFCSDEHVVKMIVPMFDPMPPLYYVRIVSDRWIG 1270
Score = 935 (334.2 bits), Expect = 1.3e-116, Sum P(2) = 1.3e-116
Identities = 198/432 (45%), Positives = 281/432 (65%)
Query: 260 LNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKILAEG-DDREVENKLLYHLQFDK 318
L+ +DIDA+W+QR +++ F DP Q+ EV+ IL DDR+ EN+L+ L FD+
Sbjct: 255 LHPRDIDAHWIQRSLAKYFK---DPLIAQQKQTEVIGILKNAADDRDAENQLVLLLGFDQ 311
Query: 319 FSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKER 378
F IK L +NRL +++CT L +A +++ER +IE++M P+L IL L T + +
Sbjct: 312 FEFIKCLRQNRLMILYCTLLRQA-NEKERLQIEDDMRSR-PELHPILALLQETDEGSVVQ 369
Query: 379 QKNLEKSIREEARRLKDESASXXXXXXXXXXXXXXXXXWLGQRQLLDLDTLAFQQGGLFM 438
+EKS R+ + K +A+ W R++LDL+ L F QG M
Sbjct: 370 ---VEKSKRDAEKSKKAATAANEAISAGQ---------WQAGRKMLDLNDLTFSQGSHLM 417
Query: 439 ANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNR 498
+N++C+LP+GS R K YEEIHVPA+K +P EKL+ +SE+P+WAQPAF G LNR
Sbjct: 418 SNKRCELPDGSYRRQKKSYEEIHVPALKPRPFAEGEKLVSVSELPKWAQPAFDGYKSLNR 477
Query: 499 VQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558
+QSR+ SAL S +++LLCAPTGAGKTNVA+LT+LQ++ + +DGS +KIVY+AP
Sbjct: 478 IQSRLCDSALRSKEHLLLCAPTGAGKTNVALLTMLQEIGNHLAEDGSVKLDEFKIVYIAP 537
Query: 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDR 618
MK+LV E+VG+ S RL + + V E++GD ++++Q TQ+IV TPEK+D++TRK G+R
Sbjct: 538 MKSLVQEMVGSFSKRLAPFGITVGEMTGDAQMSKEQFMATQVIVCTPEKYDVVTRKGGER 597
Query: 619 TYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVAL 678
Y Q+V+ +RGPVLESIV RT+RQ+E + RLVGLSATLPNY+DVA
Sbjct: 598 AYNQMVRLLIIDEIHLLHDDRGPVLESIVVRTIRQMEQNHDECRLVGLSATLPNYQDVAT 657
Query: 679 FLRVNLEKGLFY 690
FLRV E F+
Sbjct: 658 FLRVKPEHLHFF 669
Score = 767 (275.1 bits), Expect = 2.7e-94, Sum P(2) = 2.7e-94
Identities = 222/828 (26%), Positives = 394/828 (47%)
Query: 489 AFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNH 548
A G N +Q++V+++ S +N+++CAP G+GKT +A L +L+ N
Sbjct: 1315 AESGFKVFNPIQTQVFRTVFESNENVIVCAPNGSGKTAIAELAVLRHFE---------NT 1365
Query: 549 SNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVRELSGDQTLTRQQIEETQIIVTTPEK 607
K VY+ PM+ + +V + RL+ + L+G+QT+ + + Q+I++TPE+
Sbjct: 1366 PEAKAVYITPMEDMATKVYADWKRRLEPAIGHTIVLLTGEQTMDLKLAQRGQLIISTPER 1425
Query: 608 WDIITRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEH-IRLVGL 666
WD I+R+ R Q VK + G V E + +RT R I + E +R+V L
Sbjct: 1426 WDNISRRWKQRKSVQNVKLFIADDLHMIGASNGAVFEVVCSRT-RYISSQLESAVRVVAL 1484
Query: 667 SATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEK 726
S++L N D+ ++L + F F S RPVPL + + RF M Y+
Sbjct: 1485 SSSLTNARDLGMWLGCSAS-ATFNFMPSTRPVPLDLEIKSFNLSHNASRFAAMERPVYQA 1543
Query: 727 VVAVAGKHQ---VLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDM 783
+ AGK + L+FV R++T A A+ AL + RFL+ + + Q+
Sbjct: 1544 ICRHAGKLEPKPALVFVPVRRQTRPVAVALLTMALADGAPKRFLRL-AEHDDTFQALLAD 1602
Query: 784 VKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVII 843
++ L++ + G H G D +V+ LF +QV V + + + + A+ V++
Sbjct: 1603 IEDESLRESVSCGVGFLHEGTAPKDVHIVQQLFESNAIQVCVVPRGMCYQIEMSAYLVVV 1662
Query: 844 KGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLP 903
TQ YN + + + D++ M+G A RP DS + +++ S+ YY + LP
Sbjct: 1663 MDTQFYNGKYHVYEDYPIADMLHMVGLANRPILDSDAKCVVMCQTSKRAYYKKFLCDPLP 1722
Query: 904 IESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDIT 963
+ES L D NAEIV T++N ++A +++ +T LY RM +NP Y L +
Sbjct: 1723 VESHLDHCLHDHFNAEIVTKTIENKQDAIDYLTWTLLYRRMTQNPNYYNLQGTTHRH--- 1779
Query: 964 LGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPT 1023
L + ++LV L+ + + + + +LG IASYYYIS+ TI ++ LK
Sbjct: 1780 LSDALSELVELTLKDLENSKCIAVKDEMDTVSL-NLGMIASYYYISYQTIELFSMSLKEK 1838
Query: 1024 MGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVK-ESLEEPSAKINVLLQAYI 1082
L + S S EF V +R E + L +L +R+P +K + +P K+N+L+ A++
Sbjct: 1839 TKTRALIEIISASSEFGNVPMRHKEDVILRQLAERLPGQLKNQKFTDPHVKVNLLIHAHL 1898
Query: 1083 SQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQT 1142
S++KL L D I A RL++A +++ GW A A+ LS+M+T+ M+S +
Sbjct: 1899 SRVKLTA-ELNKDTELIVLRACRLVQACVDVLSSNGWLSPAIHAMELSQMLTQAMYSNEP 1957
Query: 1143 PLRQFNGIPNEILMKLEKKDFAWE-RYYDLSPQELGELIRFPKMGRT-LHKFVHQFPKLI 1200
L+Q +L + + K+ +L + ++++ + +F + +P +
Sbjct: 1958 YLKQLPHCSAALLERAKAKEVTSVFELLELENDDRSDILQMEGAELADVARFCNHYPSIE 2017
Query: 1201 LAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEP--------------FWVIVEDNDGE 1246
+A ++ T L + D+ + G P +W+++ D++
Sbjct: 2018 VATELENDVVTS-NDNLMLAVSLERDNDIDGLAPPVVAPLFPQKRKEEGWWLVIGDSESN 2076
Query: 1247 YILHHEYFMLKKQYIEEDHS--LNFTVPIYEPLPPQYFIRVVSDKWLG 1292
+L +K+ I E S L+F P P ++ + +SD +LG
Sbjct: 2077 ALL-----TIKRLVINEKSSVQLDFAAP--RPGHHKFKLFFISDSYLG 2117
Score = 261 (96.9 bits), Expect = 0., Sum P(2) = 0.
Identities = 63/176 (35%), Positives = 91/176 (51%)
Query: 9 AEAHARFKQYEYRANSSLVLTTD---SRPRDTHEPTGEPESLWGK-IDPRSFGDRAFRGR 64
A+ AR +QYEYR NS+LVL+ D + R EPTGE + K + GDRA +G+
Sbjct: 2 ADELARIQQYEYRQNSNLVLSVDYNLTDRRGREEPTGEVLPITDKEMRKMKMGDRAIKGK 61
Query: 65 PPXXXXXXXXXXXXXXXRDPDADAAAASE----GTYQPKTKETRAAYEAMLSVIQQQLGG 120
P G Y+P+T+ET+ YE +LS I LG
Sbjct: 62 APVQDQKKKRKKKDDEKAQQFGRNVLVDNNELMGAYKPRTQETKQTYEVILSFILDALGD 121
Query: 121 QPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLVSIGKLITDY 176
P ++ GAADE+L LKND ++ +KKKE+E LL P+ + L+++ K I+D+
Sbjct: 122 VPREVLCGAADEVLLTLKNDKFRDKEKKKEVEALLGPLTDDRIAVLINLSKKISDF 177
Score = 39 (18.8 bits), Expect = 1.2e-312, Sum P(2) = 1.2e-312
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 342 QDQEERKKIEEEMMGLGPDLAAILDQL 368
+D+E++K++E + L D A+L L
Sbjct: 144 RDKEKKKEVEALLGPLTDDRIAVLINL 170
>UNIPROTKB|Q9U2G0 [details] [associations]
symbol:Y46G5A.4 "Putative U5 small nuclear
ribonucleoprotein 200 kDa helicase" species:6239 "Caenorhabditis
elegans" [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0018991 GO:GO:0016477 GO:GO:0008406 GO:GO:0002119
GO:GO:0008380 GO:GO:0006397 GO:GO:0005681 GO:GO:0003676
GO:GO:0042127 GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 eggNOG:COG1204 HOGENOM:HOG000157749
GeneTree:ENSGT00640000091272 KO:K12854 OMA:KWDVLSR GO:GO:0008026
EMBL:AL110485 RefSeq:NP_496710.1 ProteinModelPortal:Q9U2G0
SMR:Q9U2G0 IntAct:Q9U2G0 MINT:MINT-1062451 STRING:Q9U2G0
PaxDb:Q9U2G0 EnsemblMetazoa:Y46G5A.4 GeneID:174901
KEGG:cel:CELE_Y46G5A.4 UCSC:Y46G5A.4 CTD:174901 WormBase:Y46G5A.4
InParanoid:Q9U2G0 NextBio:885976 Uniprot:Q9U2G0
Length = 2145
Score = 2984 (1055.5 bits), Expect = 0., Sum P(2) = 0.
Identities = 569/1011 (56%), Positives = 746/1011 (73%)
Query: 283 DPQQCQKLAEEVLKILAEG-DDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARA 341
DP Q+ EV+ IL DDR+ EN+L+ L FD+F IK L +NRL +++CT L +A
Sbjct: 275 DPLIAQQKQTEVIGILKNAADDRDAENQLVLLLGFDQFEFIKCLRQNRLMILYCTLLRQA 334
Query: 342 QDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASXX 401
+++ER +IE++M P+L IL L T + + +EKS R+ + K +A+
Sbjct: 335 -NEKERLQIEDDMRSR-PELHPILALLQETDEGSVVQ---VEKSKRDAEKSKKAATAANE 389
Query: 402 XXXXXXXXXXXXXXXWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIH 461
W R++LDL+ L F QG M+N++C+LP+GS R K YEEIH
Sbjct: 390 AISAGQ---------WQAGRKMLDLNDLTFSQGSHLMSNKRCELPDGSYRRQKKSYEEIH 440
Query: 462 VPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTG 521
VPA+K +P EKL+ +SE+P+WAQPAF G LNR+QSR+ SAL S +++LLCAPTG
Sbjct: 441 VPALKPRPFAEGEKLVSVSELPKWAQPAFDGYKSLNRIQSRLCDSALRSKEHLLLCAPTG 500
Query: 522 AGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKV 581
AGKTNVA+LT+LQ++ + +DGS +KIVY+APMK+LV E+VG+ S RL + + V
Sbjct: 501 AGKTNVALLTMLQEIGNHLAEDGSVKLDEFKIVYIAPMKSLVQEMVGSFSKRLAPFGITV 560
Query: 582 RELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXXNRGP 641
E++GD ++++Q TQ+IV TPEK+D++TRK G+R Y Q+V+ +RGP
Sbjct: 561 GEMTGDAQMSKEQFMATQVIVCTPEKYDVVTRKGGERAYNQMVRLLIIDEIHLLHDDRGP 620
Query: 642 VLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLS 701
VLESIV RT+RQ+E + RLVGLSATLPNY+DVA FLRV E L +FDNSYRPVPL
Sbjct: 621 VLESIVVRTIRQMEQNHDECRLVGLSATLPNYQDVATFLRVKPEH-LHFFDNSYRPVPLE 679
Query: 702 QQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALEND 761
QQYIG+ KK L+RFQ MN++ Y+K++ AGK QVL+FVHSRKETAKTA+AIRD LE D
Sbjct: 680 QQYIGVTEKKALKRFQAMNEVVYDKIMEHAGKSQVLVFVHSRKETAKTAKAIRDACLEKD 739
Query: 762 TLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHV 821
TL F++E S S EIL++ + K+ DLKDLLPYGFAIHHAGM R DR LVEDLF D H+
Sbjct: 740 TLSAFMREGSASTEILRTEAEQAKNLDLKDLLPYGFAIHHAGMNRVDRTLVEDLFADRHI 799
Query: 822 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGE 881
QVL STATLAWGVNLPAHTVIIKGTQIYNPEKG WTEL LDIMQMLGRAGRPQYD GE
Sbjct: 800 QVLFSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWTELGALDIMQMLGRAGRPQYDDRGE 859
Query: 882 GIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLY 941
GI+IT HSEL+YYLSLMNQQLP+ESQ VS+L D LNAE+VLGTV + EA NW+GYT+L+
Sbjct: 860 GILITNHSELQYYLSLMNQQLPVESQMVSRLTDMLNAEVVLGTVSSVSEATNWLGYTFLF 919
Query: 942 IRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGR 1001
+RML+NP LYG+ E + D L +RRADL+HTA +LD+ L+KYD++SG Q T+LGR
Sbjct: 920 VRMLKNPTLYGITHEQARADPLLEQRRADLIHTACVLLDKAGLIKYDKRSGIIQATELGR 979
Query: 1002 IASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPI 1061
IAS++Y ++ ++ TYN+ L T DI+L R+FS+S EFK ++VR +EK+EL K+ + PI
Sbjct: 980 IASHFYCTYESMQTYNKLLVETCSDIDLFRIFSMSSEFKLLSVRDEEKLELQKMAEHAPI 1039
Query: 1062 PVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQ 1121
P+KE+L+E SAK NVLLQAYISQLKLEG +L +DMVF+ QSAGRL RALFEIVL RGWA
Sbjct: 1040 PIKENLDEASAKTNVLLQAYISQLKLEGFALQADMVFVAQSAGRLFRALFEIVLWRGWAG 1099
Query: 1122 LAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIR 1181
LA+K L L KMVT+R W PL QF IP+E++ ++KK+++++R YDL +LG+LI+
Sbjct: 1100 LAQKVLTLCKMVTQRQWGSLNPLHQFKKIPSEVVRSIDKKNYSFDRLYDLDQHQLGDLIK 1159
Query: 1182 FPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVE 1241
PKMG+ L KF+ QFPKL + +QPITRT +++ELTITPDF WD+KVHG E FW+ +E
Sbjct: 1160 MPKMGKPLFKFIRQFPKLEMTTLIQPITRTTMRIELTITPDFKWDEKVHGSAEGFWIFIE 1219
Query: 1242 DNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLG 1292
D DGE ILHHE+F+LK+++ ++H + VP+++P+PP Y++R+VSD+W+G
Sbjct: 1220 DTDGEKILHHEFFLLKQKFCSDEHVVKMIVPMFDPMPPLYYVRIVSDRWIG 1270
Score = 935 (334.2 bits), Expect = 1.3e-116, Sum P(2) = 1.3e-116
Identities = 198/432 (45%), Positives = 281/432 (65%)
Query: 260 LNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKILAEG-DDREVENKLLYHLQFDK 318
L+ +DIDA+W+QR +++ F DP Q+ EV+ IL DDR+ EN+L+ L FD+
Sbjct: 255 LHPRDIDAHWIQRSLAKYFK---DPLIAQQKQTEVIGILKNAADDRDAENQLVLLLGFDQ 311
Query: 319 FSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKER 378
F IK L +NRL +++CT L +A +++ER +IE++M P+L IL L T + +
Sbjct: 312 FEFIKCLRQNRLMILYCTLLRQA-NEKERLQIEDDMRSR-PELHPILALLQETDEGSVVQ 369
Query: 379 QKNLEKSIREEARRLKDESASXXXXXXXXXXXXXXXXXWLGQRQLLDLDTLAFQQGGLFM 438
+EKS R+ + K +A+ W R++LDL+ L F QG M
Sbjct: 370 ---VEKSKRDAEKSKKAATAANEAISAGQ---------WQAGRKMLDLNDLTFSQGSHLM 417
Query: 439 ANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNR 498
+N++C+LP+GS R K YEEIHVPA+K +P EKL+ +SE+P+WAQPAF G LNR
Sbjct: 418 SNKRCELPDGSYRRQKKSYEEIHVPALKPRPFAEGEKLVSVSELPKWAQPAFDGYKSLNR 477
Query: 499 VQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558
+QSR+ SAL S +++LLCAPTGAGKTNVA+LT+LQ++ + +DGS +KIVY+AP
Sbjct: 478 IQSRLCDSALRSKEHLLLCAPTGAGKTNVALLTMLQEIGNHLAEDGSVKLDEFKIVYIAP 537
Query: 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDR 618
MK+LV E+VG+ S RL + + V E++GD ++++Q TQ+IV TPEK+D++TRK G+R
Sbjct: 538 MKSLVQEMVGSFSKRLAPFGITVGEMTGDAQMSKEQFMATQVIVCTPEKYDVVTRKGGER 597
Query: 619 TYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVAL 678
Y Q+V+ +RGPVLESIV RT+RQ+E + RLVGLSATLPNY+DVA
Sbjct: 598 AYNQMVRLLIIDEIHLLHDDRGPVLESIVVRTIRQMEQNHDECRLVGLSATLPNYQDVAT 657
Query: 679 FLRVNLEKGLFY 690
FLRV E F+
Sbjct: 658 FLRVKPEHLHFF 669
Score = 767 (275.1 bits), Expect = 2.7e-94, Sum P(2) = 2.7e-94
Identities = 222/828 (26%), Positives = 394/828 (47%)
Query: 489 AFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNH 548
A G N +Q++V+++ S +N+++CAP G+GKT +A L +L+ N
Sbjct: 1315 AESGFKVFNPIQTQVFRTVFESNENVIVCAPNGSGKTAIAELAVLRHFE---------NT 1365
Query: 549 SNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVRELSGDQTLTRQQIEETQIIVTTPEK 607
K VY+ PM+ + +V + RL+ + L+G+QT+ + + Q+I++TPE+
Sbjct: 1366 PEAKAVYITPMEDMATKVYADWKRRLEPAIGHTIVLLTGEQTMDLKLAQRGQLIISTPER 1425
Query: 608 WDIITRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEH-IRLVGL 666
WD I+R+ R Q VK + G V E + +RT R I + E +R+V L
Sbjct: 1426 WDNISRRWKQRKSVQNVKLFIADDLHMIGASNGAVFEVVCSRT-RYISSQLESAVRVVAL 1484
Query: 667 SATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEK 726
S++L N D+ ++L + F F S RPVPL + + RF M Y+
Sbjct: 1485 SSSLTNARDLGMWLGCSAS-ATFNFMPSTRPVPLDLEIKSFNLSHNASRFAAMERPVYQA 1543
Query: 727 VVAVAGKHQ---VLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDM 783
+ AGK + L+FV R++T A A+ AL + RFL+ + + Q+
Sbjct: 1544 ICRHAGKLEPKPALVFVPVRRQTRPVAVALLTMALADGAPKRFLRL-AEHDDTFQALLAD 1602
Query: 784 VKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVII 843
++ L++ + G H G D +V+ LF +QV V + + + + A+ V++
Sbjct: 1603 IEDESLRESVSCGVGFLHEGTAPKDVHIVQQLFESNAIQVCVVPRGMCYQIEMSAYLVVV 1662
Query: 844 KGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLP 903
TQ YN + + + D++ M+G A RP DS + +++ S+ YY + LP
Sbjct: 1663 MDTQFYNGKYHVYEDYPIADMLHMVGLANRPILDSDAKCVVMCQTSKRAYYKKFLCDPLP 1722
Query: 904 IESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDIT 963
+ES L D NAEIV T++N ++A +++ +T LY RM +NP Y L +
Sbjct: 1723 VESHLDHCLHDHFNAEIVTKTIENKQDAIDYLTWTLLYRRMTQNPNYYNLQGTTHRH--- 1779
Query: 964 LGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPT 1023
L + ++LV L+ + + + + +LG IASYYYIS+ TI ++ LK
Sbjct: 1780 LSDALSELVELTLKDLENSKCIAVKDEMDTVSL-NLGMIASYYYISYQTIELFSMSLKEK 1838
Query: 1024 MGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVK-ESLEEPSAKINVLLQAYI 1082
L + S S EF V +R E + L +L +R+P +K + +P K+N+L+ A++
Sbjct: 1839 TKTRALIEIISASSEFGNVPMRHKEDVILRQLAERLPGQLKNQKFTDPHVKVNLLIHAHL 1898
Query: 1083 SQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQT 1142
S++KL L D I A RL++A +++ GW A A+ LS+M+T+ M+S +
Sbjct: 1899 SRVKLTA-ELNKDTELIVLRACRLVQACVDVLSSNGWLSPAIHAMELSQMLTQAMYSNEP 1957
Query: 1143 PLRQFNGIPNEILMKLEKKDFAWE-RYYDLSPQELGELIRFPKMGRT-LHKFVHQFPKLI 1200
L+Q +L + + K+ +L + ++++ + +F + +P +
Sbjct: 1958 YLKQLPHCSAALLERAKAKEVTSVFELLELENDDRSDILQMEGAELADVARFCNHYPSIE 2017
Query: 1201 LAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEP--------------FWVIVEDNDGE 1246
+A ++ T L + D+ + G P +W+++ D++
Sbjct: 2018 VATELENDVVTS-NDNLMLAVSLERDNDIDGLAPPVVAPLFPQKRKEEGWWLVIGDSESN 2076
Query: 1247 YILHHEYFMLKKQYIEEDHS--LNFTVPIYEPLPPQYFIRVVSDKWLG 1292
+L +K+ I E S L+F P P ++ + +SD +LG
Sbjct: 2077 ALL-----TIKRLVINEKSSVQLDFAAP--RPGHHKFKLFFISDSYLG 2117
Score = 261 (96.9 bits), Expect = 0., Sum P(2) = 0.
Identities = 63/176 (35%), Positives = 91/176 (51%)
Query: 9 AEAHARFKQYEYRANSSLVLTTD---SRPRDTHEPTGEPESLWGK-IDPRSFGDRAFRGR 64
A+ AR +QYEYR NS+LVL+ D + R EPTGE + K + GDRA +G+
Sbjct: 2 ADELARIQQYEYRQNSNLVLSVDYNLTDRRGREEPTGEVLPITDKEMRKMKMGDRAIKGK 61
Query: 65 PPXXXXXXXXXXXXXXXRDPDADAAAASE----GTYQPKTKETRAAYEAMLSVIQQQLGG 120
P G Y+P+T+ET+ YE +LS I LG
Sbjct: 62 APVQDQKKKRKKKDDEKAQQFGRNVLVDNNELMGAYKPRTQETKQTYEVILSFILDALGD 121
Query: 121 QPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLVSIGKLITDY 176
P ++ GAADE+L LKND ++ +KKKE+E LL P+ + L+++ K I+D+
Sbjct: 122 VPREVLCGAADEVLLTLKNDKFRDKEKKKEVEALLGPLTDDRIAVLINLSKKISDF 177
Score = 39 (18.8 bits), Expect = 1.2e-312, Sum P(2) = 1.2e-312
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 342 QDQEERKKIEEEMMGLGPDLAAILDQL 368
+D+E++K++E + L D A+L L
Sbjct: 144 RDKEKKKEVEALLGPLTDDRIAVLINL 170
>POMBASE|SPAC9.03c [details] [associations]
symbol:brr2 "U5 snRNP complex subunit Brr2 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000393 "spliceosomal
conformational changes to generate catalytic conformation"
evidence=IGI] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005682 "U5 snRNP" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=ISO] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 PomBase:SPAC9.03c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0005681
GO:GO:0005682 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 eggNOG:COG1204 HOGENOM:HOG000157749 PIR:T39188
RefSeq:NP_593346.1 ProteinModelPortal:Q9UT24 IntAct:Q9UT24
STRING:Q9UT24 EnsemblFungi:SPAC9.03c.1 GeneID:2543676
KEGG:spo:SPAC9.03c KO:K12854 OMA:KWDVLSR OrthoDB:EOG4MD17F
NextBio:20804682 GO:GO:0046540 GO:GO:0004004 GO:GO:0000393
Uniprot:Q9UT24
Length = 2176
Score = 2887 (1021.3 bits), Expect = 0., Sum P(3) = 0.
Identities = 561/1035 (54%), Positives = 744/1035 (71%)
Query: 259 SLNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKIL-AEGDDREVENKLLYHLQFD 317
+++ ++IDA+WLQR+I++ F D CQ+ + + L A+ D E+EN+L+ ++
Sbjct: 295 TVHPREIDAFWLQREIAKYF---ADAVVCQEKTNQAFEALSADYDLGELENELMSIFDYE 351
Query: 318 KFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKE 377
F L++ L +NR +V CT L RA EER +EE++ G IL+ L T +
Sbjct: 352 HFYLVQLLTKNRWTIVSCTMLKRAATDEERLGVEEQIRAAGRSW--ILEALRPGAITIPD 409
Query: 378 RQKN-LEKSIREEARRLKDESASXXXXXXXXXXXXXXXXXWLGQRQLLDLDTLAFQQGGL 436
N L ++ E+A E A + + +DL+ F +G
Sbjct: 410 DGLNELNNNVVEKA-----EPAPVSEIPLSKTLTSHK----IVPKHQVDLENYVFTEGSR 460
Query: 437 FMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQL 496
M+N+ LPEGS R T KGYEEIHVPA L +E+L+KI E+PEW+ AF L
Sbjct: 461 LMSNKAVKLPEGSFRRTGKGYEEIHVPAPNKAVLGADERLVKIKELPEWSHQAFLNTQSL 520
Query: 497 NRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYV 556
NR+QS +Y A + +NILLCAPTGAGKTNVA+L IL +L + +D SFN N+KIVY+
Sbjct: 521 NRIQSHLYPIAFGTDENILLCAPTGAGKTNVAMLCILNELQKHLREDLSFNLQNFKIVYI 580
Query: 557 APMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSG 616
AP+KALV E+V N S RL Y+++V EL+GD LT+QQI ETQIIVTTPEKWDIITRK+
Sbjct: 581 APLKALVQEMVNNFSKRLTPYNIRVAELTGDSQLTKQQISETQIIVTTPEKWDIITRKAN 640
Query: 617 DRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDV 676
D +Y LV+ RGPVLESIVAR R E T E +RLVGLSATLPNY DV
Sbjct: 641 DLSYVNLVRLVIIDEVHLLHDERGPVLESIVARIFRHQEETLEQVRLVGLSATLPNYTDV 700
Query: 677 ALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQV 736
A FL V+ +KGLFYFD++YRP PL Q++IGI K P +R Q N+ CYEKV+ AGK+QV
Sbjct: 701 ASFLHVDPKKGLFYFDSTYRPCPLKQEFIGITEKTPFKRMQTTNEACYEKVMQHAGKNQV 760
Query: 737 LIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYG 796
LIFVHSRKETAKTAR IRD ALE +T+G L+ D+ SREIL++ D +LKDLLPYG
Sbjct: 761 LIFVHSRKETAKTARFIRDKALEEETIGHLLRSDAASREILRAEADSTSDENLKDLLPYG 820
Query: 797 FAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAW 856
FAIHHAGM R DRQ EDLF DG +QVLVSTATLAWGVNLPAHTVIIKGTQ+Y+PEKG W
Sbjct: 821 FAIHHAGMRREDRQTSEDLFADGTIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGIW 880
Query: 857 TELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQL 916
TELSP D++QMLGRAGRPQ+D+YGEGIIIT HSEL+YYLSLMNQQLPIESQF+ +LAD L
Sbjct: 881 TELSPQDVLQMLGRAGRPQFDTYGEGIIITAHSELQYYLSLMNQQLPIESQFMRRLADCL 940
Query: 917 NAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAA 976
NAE+ LGTV++ ++ +W+GYTYLY+RMLR+PALY + PE +D L ++RADL+H+AA
Sbjct: 941 NAEVSLGTVRSIEDGVDWLGYTYLYVRMLRSPALYSVGPEY-DDDKYLVQKRADLLHSAA 999
Query: 977 TILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLS 1036
+L++ L+ Y+R+SG T+LG++A+ YY++H +++ YN L T IEL R+FS S
Sbjct: 1000 ILLEKCKLLVYNRQSGTLTATELGKVAASYYVTHNSMAIYNRLLMQTTSFIELFRVFSFS 1059
Query: 1037 EEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDM 1096
+EFK++ VR++EK+ELAKLL+RVPIP++E L+EP+AKIN LLQ+YIS+ +L+G +L +DM
Sbjct: 1060 DEFKHIPVREEEKVELAKLLERVPIPIRERLDEPAAKINALLQSYISRQRLDGFALVADM 1119
Query: 1097 VFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILM 1156
V++TQSAGR++RA+FEI L+RGW+ +A +L+ KM+ KR+W +PLRQF P+E++
Sbjct: 1120 VYVTQSAGRIMRAIFEISLRRGWSSVATLSLDTCKMIEKRLWPTMSPLRQFPNCPSEVIR 1179
Query: 1157 KLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVE 1216
++EKK+F W+RY+DL P ELGEL+ PK GR ++ V FP+L + AHVQPITR++++VE
Sbjct: 1180 RVEKKEFPWQRYFDLDPAELGELVGVPKEGRRVYNMVQSFPRLSVEAHVQPITRSLVRVE 1239
Query: 1217 LTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEP 1276
L I F WDD + G E FW++VED DG+ +LH+E F L K+Y +++H +NFTVP+ EP
Sbjct: 1240 LVINSQFNWDDHLSGTSEAFWILVEDVDGDRLLHYEQFFLLKKYKDDEHIVNFTVPLLEP 1299
Query: 1277 LPPQYFIRVVSDKWL 1291
LPP YFI++VSD+WL
Sbjct: 1300 LPPCYFIKIVSDRWL 1314
Score = 546 (197.3 bits), Expect = 5.0e-65, Sum P(3) = 5.0e-65
Identities = 189/817 (23%), Positives = 380/817 (46%)
Query: 497 NRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYV 556
N++Q++V+ S + D++ + AP G+GKT A L +L + + D G+ VY+
Sbjct: 1366 NKIQTQVFNSVYKTNDSVFIGAPNGSGKTVCAELALLHHWS--QEDYGT-------AVYI 1416
Query: 557 APMKALV----AEVVGNLSNRLQMYDVKVR-ELSGDQTLTRQQIEETQIIVTTPEKWDII 611
AP++ +V E G S+ + D KV +L+G+++ + I+ +I TP +WD +
Sbjct: 1417 APIQEIVDRRYEEWYGKFSD---LGDGKVLVKLTGERSQDLKLIQVADLIFCTPSQWDSL 1473
Query: 612 TRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671
+++ Q V GP+ E +++R +++IR+VGLS ++
Sbjct: 1474 SKRWRSMRSIQKVDFYICDELQLLGGFYGPLYEIVISRIRYMAVQLEKNIRVVGLSVSVA 1533
Query: 672 NYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA-V 730
N D+ +L + + +F F RP PL+ + M+ Y + +
Sbjct: 1534 NARDLGEWLGTS-PQCIFNFSPKDRPNPLTIHLQSFSITHFPSLMLAMSKPIYRSLKNFI 1592
Query: 731 AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHT-DMVKSNDL 789
+ + ++F RK AK A + T ED ++++ + V+ L
Sbjct: 1593 SQRKSTIVFTPDRK-VAK------QLAFDLVTFS-MADEDEYLFSLMENEAFNKVEDAAL 1644
Query: 790 KDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIY 849
+ L +G A + D+ +V+ L+ G ++VL+++ + + + ++ VI+ GTQ Y
Sbjct: 1645 QQSLKHGIAYISEITSSNDQNIVQYLYRHGLIKVLIASRDVIYSLKAKSNAVIVMGTQYY 1704
Query: 850 NPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFV 909
+ ++ + + +++QMLG + I++T ++ YY +N+ LP+ES
Sbjct: 1705 DGKEHRYIDYPISELLQMLGFTASIGSSELSQVILMTVTTKKEYYKKFLNEPLPMESHLQ 1764
Query: 910 SKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRA 969
L D +EI T+++ ++A +W+ ++Y+Y R++ NPA YGL ++ E ++ E +
Sbjct: 1765 VWLHDAFVSEISTQTIESKQDAVDWLTWSYMYRRLVANPAYYGLQ-DITHESVS--EFLS 1821
Query: 970 DLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIEL 1029
DLV T L L+ D + +L IAS+Y I++ T+ T+ L L
Sbjct: 1822 DLVETTMNDLSEARLITVDDEDDSCVALNLAMIASHYGITYITMQTFALSLSERTKMKGL 1881
Query: 1030 CRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKE-SLEEPSAKINVLLQAYISQLKLE 1088
+ + + E++ + +R+ E + L ++ R+P+ + + E+P K +LL A+ S+ +L
Sbjct: 1882 LEIVTSAAEYEQLPIRKYEDIVLERIHSRLPVRLSNPNYEDPHTKSFILLAAHFSRFELP 1941
Query: 1089 GLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFN 1148
L D FI LL A + + G + + +S+MVT+ +W +PL+Q
Sbjct: 1942 P-GLVIDQKFILTRVHNLLGACVDTLSSEGHLIACIRPMEMSQMVTQALWDRDSPLKQIP 2000
Query: 1149 GIPNEILMKLEKKDF--AWERYYDLSPQELGELIRFPKMGRT-LHKFVHQFPKLIL---- 1201
+ ++ + K+ ++ DL ++ EL+ +F++++P + +
Sbjct: 2001 YFDDALIERCNKEGVHDVFD-IIDLDDEKRTELLHMDNAHLAKCAEFINKYPDIDIDFEI 2059
Query: 1202 --AAHVQPITRTVLKVELTITPDFLWDDKVHGYV-EPFWVIVEDNDGEYILHHEYFMLKK 1258
+ V + +VL V+LT + D++V V P++ + ++ + +L
Sbjct: 2060 EDSEDVHANSPSVLIVQLT--RELEEDEEVDTTVIAPYFPAQKTEHWWLVISDDKTLLAI 2117
Query: 1259 QYIEEDHSLNFTVPIYEPLPP--QYFIRVVSDKWLGV 1293
+ I SL + P +Y + SD ++GV
Sbjct: 2118 KKITLGRSLTTKMEFVPPAMGTLKYKLSCFSDSYMGV 2154
Score = 169 (64.5 bits), Expect = 0., Sum P(3) = 0.
Identities = 36/82 (43%), Positives = 53/82 (64%)
Query: 96 YQPKTKETRAAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLL 155
Y P T ETR Y+ +LS IQQ LG Q I+ AAD I+ +LK+ ++ +KK+IE++L
Sbjct: 131 YNPLTDETREVYDYILSFIQQYLGDQSPEILRSAADLIIELLKDSSLDEQGRKKQIEEVL 190
Query: 156 NP-IPNHVFDQLVSIGKLITDY 176
+ +P F QLV++G +TDY
Sbjct: 191 STELPQDRFSQLVNLGNRLTDY 212
Score = 99 (39.9 bits), Expect = 0., Sum P(3) = 0.
Identities = 32/92 (34%), Positives = 41/92 (44%)
Query: 17 QYEYRANSSLVLTTDSR--PRDTHEPTGEPESLWGKIDPRSFGDRAFRGRPPXXXXXXXX 74
QY Y A S+LV D R R EPTGEPESL ++ G RA +P
Sbjct: 29 QYSYSAMSNLVTQADRRFVSRRDAEPTGEPESLVNRVSIADMGSRARIEKP--STLPLEL 86
Query: 75 XXXXXXXRDPDADAAAASEGTYQPKTKETRAA 106
R P DA + G QP+ +E R++
Sbjct: 87 TQEVQEVRLPRKDAESLEIGIRQPE-REKRSS 117
>DICTYBASE|DDB_G0270042 [details] [associations]
symbol:ascc3l "U5 small nuclear ribonucleoprotein 200
kDa helicase" species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 dictyBase:DDB_G0270042 GO:GO:0005524
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0008380
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 eggNOG:COG1204 KO:K12854 OMA:KWDVLSR GO:GO:0008026
RefSeq:XP_646493.1 ProteinModelPortal:Q55CI8 STRING:Q55CI8
EnsemblProtists:DDB0233131 GeneID:8617455 KEGG:ddi:DDB_G0270042
InParanoid:Q55CI8 ProtClustDB:CLSZ2431432 Uniprot:Q55CI8
Length = 2237
Score = 2870 (1015.3 bits), Expect = 0., Sum P(2) = 0.
Identities = 566/1038 (54%), Positives = 758/1038 (73%)
Query: 260 LNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKILAEGDDREVENKLLYHLQFDKF 319
++ +ID++W+QRKIS+ F++ D ++LAE+ L IL + + R E +L+ DK
Sbjct: 330 ISPNEIDSFWIQRKISE-FER--DHDLSKQLAEKTLNILRQPNVRRCEQQLVDLFTIDKL 386
Query: 320 SLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQ 379
+K ++ N+ +++CT LA+A++ +ERKKIE+EM P +IL++L TA +
Sbjct: 387 DFLKLIINNKQTILYCTLLAKAENDQERKKIEDEMSS-NPVTLSILNRLKGNEVTAATTE 445
Query: 380 KNLEKSIREEARRLKDESASXXXXXXXXXXXXXXXXXWLGQRQLLDLDTLAFQQGGLFMA 439
K +EK+ E+ + KD ++LL+L+ L+FQQG M
Sbjct: 446 KTIEKT---ESNK-KDVEMKQQQQQQQDEIKK--------PKKLLNLEELSFQQGSHLMT 493
Query: 440 NRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFK--GMTQLN 497
N++ P+GS+R KG+EEIHVPA + P +PNE+LI I E+PEW++ F+ G+ LN
Sbjct: 494 NKEFKFPKGSKREQYKGFEEIHVPARANPPFNPNERLISIEELPEWSRLPFEESGVKSLN 553
Query: 498 RVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRN-DDGSFNHSNYKIVYV 556
RVQS+++ A + +N+LL APT +GKTNVA+LTIL ++ NR+ D G +KIVY+
Sbjct: 554 RVQSKLFDCAFKTDNNLLLSAPTSSGKTNVAMLTILHEIGKNRDRDSGKIRLDAFKIVYI 613
Query: 557 APMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSG 616
APMK+LV E+VGN S RL+ Y + V EL+GDQ+LT +QI ETQIIVTTPEKWDIITRKSG
Sbjct: 614 APMKSLVQEMVGNFSKRLKSYGIVVNELTGDQSLTNKQISETQIIVTTPEKWDIITRKSG 673
Query: 617 DRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDV 676
DR YTQLVK RGPVLE IVART+R IE+T++ +RLVGLSATLPNYEDV
Sbjct: 674 DRAYTQLVKLIIIDEIHLLHDERGPVLECIVARTLRMIESTQQMVRLVGLSATLPNYEDV 733
Query: 677 ALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQV 736
A FLRV + G+FYFD+SYRP+PL QQYIGI + +++ Q ND+ + KV G HQ+
Sbjct: 734 ATFLRVEPD-GVFYFDSSYRPIPLEQQYIGIS-DRGIKQLQRCNDITFTKVSERVGDHQI 791
Query: 737 LIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTD-MVKSNDLKDLLPY 795
LIFVHSR+ETAKT + +RD A+E+ ++ R+++ D SREIL++ +++ +LKDLLPY
Sbjct: 792 LIFVHSRRETAKTGKDLRDRAVEDQSIDRYIR-DPASREILRATASKQIQNAELKDLLPY 850
Query: 796 GFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGA 855
G IHHAG++R DR LVEDLFGD +QVL+STATLAWGVNLPAHTVIIKGTQIYNPEKG
Sbjct: 851 GIGIHHAGLSRSDRSLVEDLFGDNRIQVLISTATLAWGVNLPAHTVIIKGTQIYNPEKG- 909
Query: 856 WTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQ 915
W ELSPLD+ QMLGRAGRP +D GEGIIIT EL++YLSL+N QL IESQF+S++AD
Sbjct: 910 WCELSPLDVTQMLGRAGRPPFDKEGEGIIITSQHELQFYLSLLNTQLSIESQFISRIADN 969
Query: 916 LNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTA 975
LNAEIVLG++Q ++A NW+GYTYLYI M+RNP LY ++ + ++D L +RR DLVH+A
Sbjct: 970 LNAEIVLGSIQTVRDAVNWLGYTYLYICMIRNPPLYEISYDDFEKDPLLEQRRLDLVHSA 1029
Query: 976 ATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSL 1035
ATIL++N+L+KYDRKSG Q T+LG++AS+YYI++ ++S Y EHLKP+M DIEL R+FSL
Sbjct: 1030 ATILEKNSLIKYDRKSGKLQSTELGKVASHYYITNSSMSIYQEHLKPSMSDIELLRVFSL 1089
Query: 1036 SEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSD 1095
S EFK V VR+ EK EL KLL+RVPIP+KE++EEPS+KINVLLQ YIS LKL+G +L D
Sbjct: 1090 SSEFKNVVVREGEKFELEKLLERVPIPIKENIEEPSSKINVLLQTYISNLKLDGFALVVD 1149
Query: 1096 MVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEIL 1155
M +I QSA R+ RALFEIVLK+GWAQLA+K LNL+KM+ +MWS Q+PLRQF+ I ++L
Sbjct: 1150 MFYIAQSASRITRALFEIVLKKGWAQLAKKILNLAKMIDSKMWSSQSPLRQFHKISPKVL 1209
Query: 1156 MKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKV 1215
+LE++ E Y+ + Q+LG I+ P G+ L +H FPKL L AHVQPI +L+V
Sbjct: 1210 NQLERRGIPIEDLYEYNSQQLGNAIQNPSEGKQLFDLIHNFPKLDLTAHVQPILHGLLRV 1269
Query: 1216 ELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIE-EDHSLNFTVPIY 1274
EL+ITPDF +D++ H +W+IVED DGE IL+ EYF LKK+ + ED ++FTVP+
Sbjct: 1270 ELSITPDFQYDERYHNNSIGWWIIVEDVDGERILYFEYFSLKKKMVNGEDQLVSFTVPLS 1329
Query: 1275 EPLPPQYFIRVVSDKWLG 1292
+PLPPQY++RV+SD W+G
Sbjct: 1330 QPLPPQYYVRVISDHWIG 1347
Score = 749 (268.7 bits), Expect = 1.3e-88, Sum P(2) = 1.3e-88
Identities = 208/692 (30%), Positives = 352/692 (50%)
Query: 470 LDPNEKLIKISEMPEWAQPAFKGMTQL-NRVQSRVYKSALSSADNILLCAPTGAGKTNVA 528
LD I++ + P+ A+ FK + N +Q++V+ S DN + APT +GKT A
Sbjct: 1372 LDLQPLPIQVLKDPK-AESIFKPTFSIFNAIQTQVFNCMYQSNDNAFISAPTNSGKTVCA 1430
Query: 529 VLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQM---YDVKVRELS 585
+ +++ +N K+VY+APM+ L + + + SN+ + + + V +L+
Sbjct: 1431 EIALIR--CFKQNPKA-------KVVYLAPMQDLASVRLKDWSNKFGVKSPFGLVVSDLT 1481
Query: 586 GDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLES 645
GD + ++ + IIVT EKWDI++RK R Q + GP +E
Sbjct: 1482 GDAVTDNKILDRSNIIVTNCEKWDILSRKWKQRKALQSINLLIVDELHLIGGEYGPTMEI 1541
Query: 646 IVARTVRQIET-TKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQY 704
+V+R +R I T T +R++ LS+++ N D+ L++ + + F + RP+P+ Q
Sbjct: 1542 VVSR-MRYISTQTGNALRVIALSSSIANARDLVLWIGATPQT-CYNFHPNVRPIPVEYQI 1599
Query: 705 IGIQVKKPLQRFQLMND-LCYEKVVAVAGKHQVLIFVHSRK-ETAKTARAIRDTALENDT 762
G + R M YE VA Q ++FV +RK + A I + + DT
Sbjct: 1600 QGFEFPHFNARMLAMTKPTVYE--VAKNKNQQSIVFVPTRKLSRSLAADIIANVSSFEDT 1657
Query: 763 LGRFLKEDSVSRE-ILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHV 821
L K V E +L + + V S LK L G A +H G+T +R++VE LF G +
Sbjct: 1658 L---TKPYLVCEEHVLTPYLEDVDSFALKQSLQMGVAFYHDGLTERERRVVEILFRSGSI 1714
Query: 822 QVLVSTATLAWGV-NLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQ----Y 876
+VL++T ++AW + N+ A V+I GTQ+Y + + + DI+QM+GRAG+ +
Sbjct: 1715 RVLIATHSVAWLLDNVFAQLVVIMGTQLYQGKDIRYIDYPINDILQMIGRAGKQEGGGVI 1774
Query: 877 DSYGEGIIITGHSELR-YYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWI 935
+ +++ H+ + YY +N+ LP+ES L DQ N+EIV T+ ++A +++
Sbjct: 1775 SNKVAKVLLLCHAPKKEYYKMFLNEPLPVESHLDHCLHDQFNSEIVTKTITKKQDALDYL 1834
Query: 936 GYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQ 995
+T+LY R+ +NP Y L+ + L E ++LV L+++N +
Sbjct: 1835 TWTFLYRRLNQNPNYYNLSGV---SHLHLSEHLSELVENTLVELEQSNCITIQDDQDKVS 1891
Query: 996 VTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKL 1055
+LG IASYYY+ + TI + LK T + + S + EF + +R E L KL
Sbjct: 1892 PLNLGIIASYYYLKYQTIELFGSSLKSTTRRRGIMDIISNAPEFNSLPIRHREDQILMKL 1951
Query: 1056 LDRVPIPV-KESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIV 1114
+P + K + +E S K+NVLLQ + S+ + L D FI ++A RLL+A+ +++
Sbjct: 1952 ASHLPQKIDKPNYQEISTKVNVLLQCHFSRESISA-DLYQDQKFILENATRLLQAIVDVI 2010
Query: 1115 LKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQ 1146
W Q A A+ LS+M+T+ MW + +Q
Sbjct: 2011 SSNSWLQPAIAAMELSQMITQAMWDSDSVFKQ 2042
Score = 227 (85.0 bits), Expect = 0., Sum P(2) = 0.
Identities = 43/90 (47%), Positives = 63/90 (70%)
Query: 88 AAAASEGTYQPKTKETRAAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDK 147
A + +G Y+PKTKETR YE +L+ IQ+ +G QP +V GA DEIL++LK+D ++ P+K
Sbjct: 122 ATESFQGLYKPKTKETRITYETLLTFIQRYVGDQPTEVVKGALDEILSILKDDTIRAPEK 181
Query: 148 KKEIEKLLNPIPNHVFDQLVSIGKLITDYQ 177
K EI KLL + + F +L +GK ITD++
Sbjct: 182 KIEISKLLKGLNDVSFAELTQLGKQITDFK 211
Score = 117 (46.2 bits), Expect = 8.0e-309, Sum P(2) = 8.0e-309
Identities = 44/168 (26%), Positives = 74/168 (44%)
Query: 9 AEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAFRGRPPXX 68
+E AR KQY Y+ NS+LV ++ + EP GEPE+LWG++ GDR +P
Sbjct: 2 SEELARSKQYGYKENSNLVFYSERNRSELKEPKGEPETLWGRLRGE-MGDRVNYSKPLEL 60
Query: 69 XXXXXXXXXXXXXRDPDADAAAASEGTYQPKTKETRAAYEAMLSVIQQQLGG-----QPL 123
++ D ++++ TY TK+ + ++ G +P+
Sbjct: 61 LEKMQNLKRKTIEKE-GGDVNSSND-TYST-TKKVKNQNPLEKKSTNRKSNGNNNNEKPI 117
Query: 124 NIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLVSIGK 171
+I+S A + + K K + + E LL I +V DQ + K
Sbjct: 118 DILS-ATESFQGLYKP---KTKETRITYETLLTFIQRYVGDQPTEVVK 161
Score = 43 (20.2 bits), Expect = 3.3e-69, Sum P(2) = 3.3e-69
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 111 LSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIP 159
+S+ Q+ L +I + + KN V+ +K E+EKLL +P
Sbjct: 1067 MSIYQEHLKPSMSDIELLRVFSLSSEFKNVVVREGEKF-ELEKLLERVP 1114
Score = 38 (18.4 bits), Expect = 1.1e-68, Sum P(2) = 1.1e-68
Identities = 6/20 (30%), Positives = 14/20 (70%)
Query: 140 DAVKNPDKKKEIEKLLNPIP 159
+A++NP + K++ L++ P
Sbjct: 1232 NAIQNPSEGKQLFDLIHNFP 1251
Score = 38 (18.4 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 273 KISQAFDQQIDPQQCQKLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKV 332
K++ Q+ID Q+++ +V +L RE + LY Q KF+L N ++
Sbjct: 1950 KLASHLPQKIDKPNYQEISTKVNVLLQCHFSRESISADLYQDQ-------KFILENATRL 2002
Query: 333 V 333
+
Sbjct: 2003 L 2003
>ASPGD|ASPL0000051297 [details] [associations]
symbol:AN10194 species:162425 "Emericella nidulans"
[GO:0000393 "spliceosomal conformational changes to generate
catalytic conformation" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 EMBL:BN001307
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
GO:GO:0046540 GO:GO:0000388 GO:GO:0008026
EnsemblFungi:CADANIAT00008099 OMA:AMNEACY Uniprot:C8VMF3
Length = 2208
Score = 2857 (1010.8 bits), Expect = 0., Sum P(3) = 0.
Identities = 555/1043 (53%), Positives = 744/1043 (71%)
Query: 260 LNVQDIDAYWLQRKISQAF-DQQIDPQQCQKLAEEVLKILAEGDDR---EVENKLLYHLQ 315
++ +DIDAYWLQR+I A+ D I ++ + E + +G R +VEN L+
Sbjct: 297 VSARDIDAYWLQRQIGAAYSDAHIQQEKATQALEIMEGKTEDGSPRSLRDVENDLMELFD 356
Query: 316 FDKFSLIKFLLRNRLKVVWCTRLAR-AQDQEERKKIEEEMMGLGPDLAAILDQLHATRAT 374
+D L+ L+ NR KVVW TR R A+D + R +E EM+ G ILD++ +
Sbjct: 357 YDFPDLVAKLVTNRDKVVWTTRWRRVAEDADARNLVESEMVEAGH--RGILDEIRGKTVS 414
Query: 375 AKERQKNLEKSIREEARRLKDESASXXXXXXXXXXXXXXXXXWLGQRQLLDLDTLAFQQG 434
EK I+ + + A L ++L++L+ L F QG
Sbjct: 415 RDNDSGRPEKRIKMDLMDVDLPKAPAAAEEKKTADGGLVRG--LQPKRLINLENLVFHQG 472
Query: 435 GLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMT 494
M N LP+GS + T KGYEEIHVP K K +P E+ + ISE+PEWA+ F
Sbjct: 473 NHLMTNPNVKLPQGSTKRTFKGYEEIHVPQPKSKQ-EPGERKVAISELPEWARIGFGDAK 531
Query: 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDD-GSFNHSNYKI 553
+LNR+Q++ Y SA N+L+CAPTG+GKTNVA+L+IL+++ NRN G ++KI
Sbjct: 532 ELNRIQTKCYPSAFQDDGNMLVCAPTGSGKTNVAMLSILREVGKNRNSQTGEIMLDDFKI 591
Query: 554 VYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITR 613
VY++P+KALV E V N RL Y +KV EL+GD+ LT+QQI ETQ+IVTTPEK+D+ITR
Sbjct: 592 VYISPLKALVQEQVENFGRRLAPYGIKVAELTGDRQLTKQQIAETQVIVTTPEKFDVITR 651
Query: 614 KSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY 673
K+ + +YT+LV+ RGPV+ESIV+RT+RQ+E T + +R+VGLSATLPNY
Sbjct: 652 KASETSYTKLVRLIIIDEIHLLHDERGPVIESIVSRTIRQVEQTGDAVRIVGLSATLPNY 711
Query: 674 EDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAG- 732
DVA FLRV+ KGLF+FD SYRP PL Q++IG+ KKP+++ ++MND+CY KV+ G
Sbjct: 712 RDVASFLRVDPAKGLFHFDGSYRPCPLKQEFIGVTDKKPIKQLKIMNDICYNKVIEHVGQ 771
Query: 733 -KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791
++Q+LIFVHSRKETAKTA+ +RD ALE +T+G+ LK DS SR IL + V LKD
Sbjct: 772 NRNQMLIFVHSRKETAKTAKYLRDKALEMETIGQILKSDSASRAILAEEAESVNDAALKD 831
Query: 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNP 851
+LPYGF IHHAG++ DR V+ LF DG +QVLV TATLAWGVNLPAHTVIIKGTQ+Y+P
Sbjct: 832 ILPYGFGIHHAGLSLADRDSVQALFKDGSIQVLVCTATLAWGVNLPAHTVIIKGTQVYSP 891
Query: 852 EKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSK 911
EKG+W ELSP D++QMLGRAGRPQYD+YGEGIIIT +E++YYLSLMNQQLPIESQ VSK
Sbjct: 892 EKGSWVELSPQDVLQMLGRAGRPQYDTYGEGIIITTQAEIQYYLSLMNQQLPIESQLVSK 951
Query: 912 LADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADL 971
LAD +NAEIVLG ++ E +W+GYTYL++RMLR+P LY + + +D L ++R DL
Sbjct: 952 LADNMNAEIVLGNIRTRDEGVDWLGYTYLFVRMLRSPGLYSVGADYENDD-ALEQKRVDL 1010
Query: 972 VHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCR 1031
VH+AA +L++ LVKYD+K+G Q T+LGRIAS+YYI H ++ TYN+HL+P++G+IEL R
Sbjct: 1011 VHSAAVLLEKAGLVKYDKKTGRLQSTELGRIASHYYIGHNSMLTYNQHLQPSIGNIELFR 1070
Query: 1032 LFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLS 1091
+F+LS+EFKY+ VRQDEK+ELAK+L RVP+PVKE ++EP AKINVLLQAYIS+LKLEGL+
Sbjct: 1071 IFALSDEFKYIPVRQDEKLELAKMLGRVPVPVKEGIDEPHAKINVLLQAYISRLKLEGLA 1130
Query: 1092 LTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIP 1151
L +D+V++TQSAGR+LRALFEI L+RGWA +A+ AL+L KM +RMW +PLRQF P
Sbjct: 1131 LMADLVYVTQSAGRILRALFEICLRRGWASVAKNALDLCKMAERRMWPTMSPLRQFPRCP 1190
Query: 1152 NEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRT 1211
+IL K E+ D W Y+DL P +GEL+ P+ G+T+ V +FP+L + A VQPITR+
Sbjct: 1191 RDILQKSERIDVPWGSYFDLDPPRMGELLGMPRAGKTVCDLVSKFPRLEVQAQVQPITRS 1250
Query: 1212 VLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEED---HSLN 1268
+L+VELTITP+F+WD+++HG + FW++VED DGE IL H+ F+L+K Y E + H +
Sbjct: 1251 MLRVELTITPNFVWDEELHGTAQDFWIMVEDCDGEEILFHDQFVLRKDYAESEMNEHLVE 1310
Query: 1269 FTVPIYEPLPPQYFIRVVSDKWL 1291
FTVPI EP+PP YFI +VSD+W+
Sbjct: 1311 FTVPITEPMPPNYFISLVSDRWM 1333
Score = 726 (260.6 bits), Expect = 1.2e-85, Sum P(3) = 1.2e-85
Identities = 190/684 (27%), Positives = 331/684 (48%)
Query: 467 HKPL-DPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKT 525
H PL D +K + E+ Q + N++Q++ +K+ S DN+ + APTG+GKT
Sbjct: 1355 HTPLLDMQRAPVKALKRDEY-QRLYPDWEYFNKIQTQTFKTLFESDDNVFIGAPTGSGKT 1413
Query: 526 NVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVK-VRE 583
A L IL+ A + D G + VYVAP + L+ + + RL + K + +
Sbjct: 1414 VCAELAILRHWA--KEDSG-------RAVYVAPFQELIDSRLEDWKKRLSGLAGGKSIAK 1464
Query: 584 LSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVL 643
L+G+ T + + + +++ TP +WD+++R+ R + V+ G V
Sbjct: 1465 LTGEMTADLKILAGSDLVLATPTQWDVLSRQWQKRKNVRAVELFVADELHMLGGYGGYVY 1524
Query: 644 ESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQ 703
E +V+R T+ +R+VGLS L N D+ ++ + + ++ F RPVPL
Sbjct: 1525 EVVVSRMHSIALQTESGMRIVGLSVPLSNARDIGEWIGAS-KHTIYNFSPHARPVPLELH 1583
Query: 704 YIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTL 763
+ M Y ++ ++ LIFV +RK+T TA + +D
Sbjct: 1584 IQSFSIPHFPSLMLAMARPAYLSILQLSADKPALIFVPNRKQTRATAIDLLTACSIDDDE 1643
Query: 764 GRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQV 823
RFL D E LQ V L + L +G +H +++ D+++V L+ G +QV
Sbjct: 1644 DRFLHADI---EELQPLLGRVHERTLAESLSHGIGYYHEALSQTDKRIVSHLYNIGAIQV 1700
Query: 824 LVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883
++++ + W +NL H V++ GTQ + + + + +I+QM G+A RP D G G+
Sbjct: 1701 VIASRDVCWELNLTGHLVVVMGTQFFEGREHRYIDYPISEILQMFGKASRPGQDKVGRGV 1760
Query: 884 IITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIR 943
++ + YY +N+ LP+ES + D EI GT+ + +++ +W+ YTY Y R
Sbjct: 1761 LMVPTVKREYYKKFLNEALPVESHLQLYMHDAFVTEISQGTIASTQDSVDWLTYTYFYRR 1820
Query: 944 MLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIA 1003
+L NP+ YGL ++ E L ++LV L ++ D + + I
Sbjct: 1821 LLANPSFYGLT-DISHEG--LSTFLSELVENTLKELSEAKIIDLDEEDDSVSPLNAASIG 1877
Query: 1004 SYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPV 1063
+YY IS+ T+ T+ L + + + + EF+ V +R+ E+ L ++ DRVP+
Sbjct: 1878 AYYNISYITMQTFLLSLSARTKLKGILEIVTAATEFESVQMRRHEEHILRRVYDRVPVKT 1937
Query: 1064 KE-SLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQL 1122
+ + + P K VLLQA+ S+++L + L D I A LL A +I+ G
Sbjct: 1938 SQVAFDSPHFKSFVLLQAHFSRMQLP-IDLAKDQEVIVSKALNLLSACVDILASEGHMN- 1995
Query: 1123 AEKALNLSKMVTKRMWSVQTPLRQ 1146
A A+ +S+MV + MW +PL+Q
Sbjct: 1996 AMNAMEMSQMVVQAMWDRDSPLKQ 2019
Score = 171 (65.3 bits), Expect = 0., Sum P(3) = 0.
Identities = 39/91 (42%), Positives = 59/91 (64%)
Query: 88 AAAASEGT-YQPKTKETRAAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPD 146
A A EG Y+P+T TRA Y+ +L++ +LG +V AAD +L VLK++ +K+ D
Sbjct: 107 ADALIEGLKYRPRTPATRATYDLILTLTASRLGDVSHEVVRSAADAVLEVLKDEEMKDFD 166
Query: 147 KKKEIEKLLNP-IPNHVFDQLVSIGKLITDY 176
KK+EI+ LL + F++LV++GK ITDY
Sbjct: 167 KKREIDDLLGTSLDPKEFNELVNLGKKITDY 197
Score = 102 (41.0 bits), Expect = 0., Sum P(3) = 0.
Identities = 26/58 (44%), Positives = 30/58 (51%)
Query: 11 AHARFKQYEYRANSSLVLTTDSR--PRDTHEPTGEPESLWGKIDPRSFGDRAFRGRPP 66
A QY+Y A S+LVL D R R E TG+PESL G+I R G R R P
Sbjct: 2 ADQNISQYKYSAMSNLVLQADRRFISRVNDEATGDPESLAGRISIREMGSRIARDDAP 59
Score = 46 (21.3 bits), Expect = 8.2e-309, Sum P(3) = 8.2e-309
Identities = 21/92 (22%), Positives = 44/92 (47%)
Query: 87 DAAAASEGTYQPKTKETRAAYEAMLSVIQQQLGG--QPLNIVSGAADEILAVLKNDAVK- 143
D A+++G Q K +A + +Q+Q+G +I A + L +++
Sbjct: 281 DGGASADGEQQKKGLIV-SARDIDAYWLQRQIGAAYSDAHIQQEKATQALEIMEGKTEDG 339
Query: 144 NPDKKKEIEKLLNPIPNHVFDQLVSIGKLITD 175
+P +++E L + ++ F LV+ KL+T+
Sbjct: 340 SPRSLRDVENDLMELFDYDFPDLVA--KLVTN 369
>GENEDB_PFALCIPARUM|PFD1060w [details] [associations]
symbol:PFD1060w "u5 small nuclear
ribonucleoprotein-specific protein, putative" species:5833
"Plasmodium falciparum" [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005681
GO:GO:0003676 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 HOGENOM:HOG000157749 GO:GO:0004004 KO:K01509
RefSeq:XP_001351528.1 ProteinModelPortal:Q8IFP1 IntAct:Q8IFP1
MINT:MINT-1569750 PRIDE:Q8IFP1 EnsemblProtists:PFD1060w:mRNA
GeneID:812456 KEGG:pfa:PFD1060w EuPathDB:PlasmoDB:PF3D7_0422500
ProtClustDB:CLSZ2515128 Uniprot:Q8IFP1
Length = 2874
Score = 922 (329.6 bits), Expect = 1.9e-246, Sum P(8) = 1.9e-246
Identities = 171/300 (57%), Positives = 233/300 (77%)
Query: 654 IETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713
I ++ IRLVGLSATLPNYEDV +FLR ++E+G+FYFD+S+RPV + Q YIGI+ KK +
Sbjct: 960 ISIRRKKIRLVGLSATLPNYEDVGIFLRAHIERGIFYFDHSFRPVQIEQHYIGIKEKKGI 1019
Query: 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVS 773
+++ LMN+L YEKV+ AGK+Q+LIFVHSRKET +T++ + D +++D L +FL + +S
Sbjct: 1020 KKYALMNELTYEKVLEEAGKNQILIFVHSRKETYRTSKLLIDRFMKSDNLSKFLIDKKIS 1079
Query: 774 REILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWG 833
EIL S + V + +LK++LP+GF IHHAG+ R DR+LVEDLF D H+QVLV T+TLAWG
Sbjct: 1080 SEILLSEKEHVINEELKEILPFGFGIHHAGLKRLDRKLVEDLFSDRHIQVLVCTSTLAWG 1139
Query: 834 VNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRY 893
+NLPAHTVIIKGT +YN G + ELS +D++QM+GR+GRPQYD G+ IIIT H L+
Sbjct: 1140 INLPAHTVIIKGTSVYNINIGDFDELSSMDVLQMVGRSGRPQYDKSGKAIIITDHKNLQL 1199
Query: 894 YLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGL 953
YLSL N+QL IES + + + +NAEIVL +QN +A NW+ +TY+YIRML+ P+LYG+
Sbjct: 1200 YLSLNNEQLFIESTLLHNIVNIINAEIVLKNIQNMDDAMNWLEHTYMYIRMLKCPSLYGV 1259
Score = 644 (231.8 bits), Expect = 1.9e-246, Sum P(8) = 1.9e-246
Identities = 120/294 (40%), Positives = 191/294 (64%)
Query: 967 RRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGD 1026
R +++++ IL++ +L+KY++K T +G+I+SYYY+ + +I YN+ L +
Sbjct: 1350 RMYNILYSCFLILEKYDLIKYNKKLNTVSSTYIGKISSYYYVDYKSIDIYNKKLNKYTNE 1409
Query: 1027 IELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLK 1086
I+L ++F++S EFK + +R +EK EL+ +++++PIPVKES+ P KIN+LLQ Y+S +
Sbjct: 1410 IDLLKIFTMSNEFKNIFIRDEEKTELSIIMEKLPIPVKESINIPYTKINILLQLYLSNII 1469
Query: 1087 LEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQ 1146
L G + +DMV+I Q+A R+ R+ FEI LK+ L + L KM+ +RMWS TPLRQ
Sbjct: 1470 LNGYIINADMVYIHQNALRIFRSFFEISLKKNSYNLIKLTLKFCKMIERRMWSTMTPLRQ 1529
Query: 1147 FNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQ 1206
F + E++ +EKK+ ++ Y ++ E + + K+ + ++K VH FPKL L A++Q
Sbjct: 1530 FGLLSTELIRIIEKKNITFKNYLTMNLNEYITIFKNKKIAKNIYKLVHHFPKLELNAYIQ 1589
Query: 1207 PITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQY 1260
PI +LKV+L I PDF+++ K HGY FWV V D E ILH++ F LKK Y
Sbjct: 1590 PINHKILKVDLNIAPDFIYNPKYHGYFMLFWVFVFDISNESILHYDLFTLKKNY 1643
Score = 388 (141.6 bits), Expect = 1.9e-246, Sum P(8) = 1.9e-246
Identities = 82/190 (43%), Positives = 123/190 (64%)
Query: 472 PNE-KLIKISEMPEWAQPAFK--GMTQLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNV 527
P E KLI I+E+PEW F +T+LN +QS+VY A + +N+L+CAPTG+GKTN+
Sbjct: 688 PEEIKLIHINELPEWTHEVFSCVNITKLNPIQSKVYDVAFNKYEENMLICAPTGSGKTNI 747
Query: 528 AVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGD 587
A+L IL + R G+ N ++KIVY++PMKALV E V + + RL+ ++KV EL+GD
Sbjct: 748 ALLCILNVINSYRLTSGNINRKDFKIVYISPMKALVNEQVQSFNLRLKCMNIKVSELTGD 807
Query: 588 QTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIV 647
L+ ++++++QIIV TPEK+D+I+RK ++ +K RG VLESI+
Sbjct: 808 VNLSTKELDDSQIIVMTPEKFDVISRKWNEKILLHKIKLIIFDEIHLLNEMRGNVLESII 867
Query: 648 ARTVRQIETT 657
AR R ++ T
Sbjct: 868 ARINRYMDNT 877
Score = 264 (98.0 bits), Expect = 1.2e-92, Sum P(7) = 1.2e-92
Identities = 66/259 (25%), Positives = 134/259 (51%)
Query: 778 QSHT-DMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNL 836
+ H D + L+ + G H MT ++++VE LF +Q+L+ + + +N+
Sbjct: 2287 EEHVFDYINDKMLRQFMKKGICYLHNNMTEIEKKIVEILFDKKTIQILIVSYDYIYSLNV 2346
Query: 837 PAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLS 896
A+ VII T I + + S +I++M+ AGR D+ I T ++ YY +
Sbjct: 2347 YANNVIILDTIITHFHNNKEEDYSIQNILEMISYAGRQNEDTKAFVYIYTYITKKEYYKN 2406
Query: 897 LMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPE 956
+ + L +ES L + LN EIV+ T++N ++A +W+ +++ Y R+ +NP YGL
Sbjct: 2407 FIYEPLTVESNIEDNLPNFLNNEIVMSTIENYQDAIDWLTWSFFYRRIKKNPNYYGLKG- 2465
Query: 957 VLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTY 1016
+ E I+ + ++L+ IL N + + ++ + +LG I+S+Y + + I +
Sbjct: 2466 ISNEHIS--DYLSELIENNMEILSFANCINIEEQTMDIKPCNLGIISSFYNLDYHIIHFF 2523
Query: 1017 NEHLKPTMGDIELCRLFSL 1035
N+++ ++ ++ R+F +
Sbjct: 2524 NQYVL-SLKTLKKSRIFEI 2541
Score = 230 (86.0 bits), Expect = 1.9e-246, Sum P(8) = 1.9e-246
Identities = 52/136 (38%), Positives = 84/136 (61%)
Query: 260 LNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKILAEGDDREVENKLLYHLQFDKF 319
LN+ ID++WLQR++++ F DP C +EVL +L D +E ENKL++ L+++ F
Sbjct: 363 LNINVIDSHWLQRELNKIFP---DPSLCLDKEKEVLNVLNIYDIQESENKLMHILKYENF 419
Query: 320 SLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEEMMGL--GPDLAAILDQLHATRATAKE 377
+ + L++NR K+ +CT L +AQ +EE+++I++EM G D ILD+L + K
Sbjct: 420 HIARVLIKNRWKIYYCTLLGQAQTEEEKEEIKKEMKKTEEGQD---ILDELCNFKNVRKN 476
Query: 378 RQKNLEKSIREEARRL 393
+Q K IR+EA L
Sbjct: 477 KQSEFSKIIRKEADNL 492
Score = 131 (51.2 bits), Expect = 1.9e-246, Sum P(8) = 1.9e-246
Identities = 29/82 (35%), Positives = 50/82 (60%)
Query: 96 YQPKTKETRAAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLL 155
Y+P TK T Y ++S I+ LG +I++ A +EIL +LKN+ + N +KKK++E L
Sbjct: 113 YKPTTKYTEEIYTKLMSKIRFLLGDNTGDIINSACNEILYILKNEELNNEEKKKQVESEL 172
Query: 156 NP-IPNHVFDQLVSIGKLITDY 176
I + +F ++ ++ K I D+
Sbjct: 173 EIYINDDIFIEINNLSKEIYDF 194
Score = 114 (45.2 bits), Expect = 1.9e-246, Sum P(8) = 1.9e-246
Identities = 24/51 (47%), Positives = 35/51 (68%)
Query: 9 AEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDR 59
AE + +FK++EYR NS+LVL + +T EPTGE ESL G++ + GD+
Sbjct: 2 AEEYEKFKRFEYRMNSNLVLQREGPISNTKEPTGESESLVGRLKYK-MGDK 51
Score = 107 (42.7 bits), Expect = 8.4e-63, Sum P(7) = 8.4e-63
Identities = 26/105 (24%), Positives = 53/105 (50%)
Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDII 611
KIVY+AP+ ++ + N + +D+K+ L+GD + + ++ II++ P +D I
Sbjct: 1834 KIVYIAPLDDVIIKTFKNWQAMKKTFDLKMCILTGDIQIDMKLLQTHHIILSNPSNYDNI 1893
Query: 612 TRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIET 656
++K + Q V +G ++E +++R +R I T
Sbjct: 1894 SKKWRRKKILQTVSFYIFDHMELLDTVQGGIMEILISR-IRYIST 1937
Score = 81 (33.6 bits), Expect = 1.9e-246, Sum P(8) = 1.9e-246
Identities = 27/87 (31%), Positives = 42/87 (48%)
Query: 422 QLLDLDTLAFQQGG--LFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLD-------- 471
+ +DL+ L ++ +F N++ LP S+R K Y+EI + +MK +D
Sbjct: 622 KFIDLEKLETKEKNKDIFF-NKEVILPPESKRIERKEYDEIIISSMKDNKMDGMKRTKNN 680
Query: 472 -------PNE-KLIKISEMPEWAQPAF 490
P E KLI I+E+PEW F
Sbjct: 681 KMNYYTSPEEIKLIHINELPEWTHEVF 707
Score = 79 (32.9 bits), Expect = 1.2e-181, Sum P(7) = 1.2e-181
Identities = 64/301 (21%), Positives = 126/301 (41%)
Query: 1015 TYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQD-EKMELAKLLDRVPIPVKESLEEPSAK 1073
TY E LK ++ + + ++ + T +D +K + LL + +P+ + K
Sbjct: 2575 TY-EFLKLSINNENTLKNANIEDNLNKDTKSEDYKKDQYINLLQFMSVPMYFTSH---LK 2630
Query: 1074 INVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMV 1133
+LLQA+I + L L+ + + A +L+ +L +++ + +S+M+
Sbjct: 2631 AFILLQAHIHRYSLP-LNYIQETKTVLLKAYKLINSLIDVISSNNILNFCLFVMEVSQML 2689
Query: 1134 TKRMWSV-QTPLRQFNGIPNEILMKLEKKDFAWERYYDL-----SPQELGELIRF--PKM 1185
T+ M S Q+ L Q ++ K D YDL P+++ L++ K
Sbjct: 2690 TQSMKSTDQSNLYQLPHFDEHLIKKAN--DLEILDVYDLINAEDEPRDI--LLKHLNEKQ 2745
Query: 1186 GRTLHKFVHQFPKLILAAHVQPITRT-----VLKVELTITPDFLWDDKV---HGYVEPF- 1236
+ + FP +I + + ++ + ++ LTI D L DD V H PF
Sbjct: 2746 RSEIANVCNIFP-IIEVQYEIDLDKSYKVNEIAQLNLTIERD-LTDDAVIFAHSLYLPFE 2803
Query: 1237 -----WVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWL 1291
W+++ +L + L K + +NF +P +P I V++D ++
Sbjct: 2804 KEEMWWIVIGIKKMNLLLSIKKLSLLKSV--NNIKINFELPD-KPNTYDVVIYVINDCYV 2860
Query: 1292 G 1292
G
Sbjct: 2861 G 2861
Score = 74 (31.1 bits), Expect = 1.9e-246, Sum P(8) = 1.9e-246
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 1263 EDHSLNFTVPIYEPLPPQYFIRVVSDKWL 1291
+DH L F +PI + P Y ++V+SDKWL
Sbjct: 1671 DDHVLTFFLPINDN--PFYIVKVISDKWL 1697
Score = 60 (26.2 bits), Expect = 1.2e-179, Sum P(7) = 1.2e-179
Identities = 43/198 (21%), Positives = 85/198 (42%)
Query: 951 YGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKY-----DRKSGYFQVTDLGRIASY 1005
Y L ++E T+ + L+++ ++ NN++ + + Q ++
Sbjct: 2642 YSLPLNYIQETKTVLLKAYKLINSLIDVISSNNILNFCLFVMEVSQMLTQSMKSTDQSNL 2701
Query: 1006 YYISHGTISTYNEHLKPTMGDIELCRLFSL---SEEFKYVTVRQ-DEKM--ELAKLLDRV 1059
Y + H ++EHL D+E+ ++ L +E + + ++ +EK E+A + +
Sbjct: 2702 YQLPH-----FDEHLIKKANDLEILDVYDLINAEDEPRDILLKHLNEKQRSEIANVCNIF 2756
Query: 1060 PI-PVKESLE-EPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKR 1117
PI V+ ++ + S K+N + Q L +E LT D V S L FE +
Sbjct: 2757 PIIEVQYEIDLDKSYKVNEIAQL---NLTIER-DLTDDAVIFAHS----LYLPFEKE-EM 2807
Query: 1118 GWAQLAEKALNLSKMVTK 1135
W + K +NL + K
Sbjct: 2808 WWIVIGIKKMNLLLSIKK 2825
Score = 44 (20.5 bits), Expect = 9.3e-171, Sum P(5) = 9.3e-171
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 524 KTNVAVLTILQQLALNRN------DDGSFNH-SNYKI 553
K N+ ++ +++A+NRN DD +N SN KI
Sbjct: 59 KKNIMLVQDNKEMAINRNKRKDIFDDDKYNRRSNKKI 95
Score = 38 (18.4 bits), Expect = 4.9e-25, Sum P(4) = 4.9e-25
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 136 VLKNDA-VKNPDKKKEIEKLLNPIPNHVFDQL 166
+L N + N KK +K+L + ++FD +
Sbjct: 1883 ILSNPSNYDNISKKWRRKKILQTVSFYIFDHM 1914
>UNIPROTKB|Q8IFP1 [details] [associations]
symbol:PFD1060w "U5 small nuclear
ribonucleoprotein-specific protein, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005681
GO:GO:0003676 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 HOGENOM:HOG000157749 GO:GO:0004004 KO:K01509
RefSeq:XP_001351528.1 ProteinModelPortal:Q8IFP1 IntAct:Q8IFP1
MINT:MINT-1569750 PRIDE:Q8IFP1 EnsemblProtists:PFD1060w:mRNA
GeneID:812456 KEGG:pfa:PFD1060w EuPathDB:PlasmoDB:PF3D7_0422500
ProtClustDB:CLSZ2515128 Uniprot:Q8IFP1
Length = 2874
Score = 922 (329.6 bits), Expect = 1.9e-246, Sum P(8) = 1.9e-246
Identities = 171/300 (57%), Positives = 233/300 (77%)
Query: 654 IETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713
I ++ IRLVGLSATLPNYEDV +FLR ++E+G+FYFD+S+RPV + Q YIGI+ KK +
Sbjct: 960 ISIRRKKIRLVGLSATLPNYEDVGIFLRAHIERGIFYFDHSFRPVQIEQHYIGIKEKKGI 1019
Query: 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVS 773
+++ LMN+L YEKV+ AGK+Q+LIFVHSRKET +T++ + D +++D L +FL + +S
Sbjct: 1020 KKYALMNELTYEKVLEEAGKNQILIFVHSRKETYRTSKLLIDRFMKSDNLSKFLIDKKIS 1079
Query: 774 REILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWG 833
EIL S + V + +LK++LP+GF IHHAG+ R DR+LVEDLF D H+QVLV T+TLAWG
Sbjct: 1080 SEILLSEKEHVINEELKEILPFGFGIHHAGLKRLDRKLVEDLFSDRHIQVLVCTSTLAWG 1139
Query: 834 VNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRY 893
+NLPAHTVIIKGT +YN G + ELS +D++QM+GR+GRPQYD G+ IIIT H L+
Sbjct: 1140 INLPAHTVIIKGTSVYNINIGDFDELSSMDVLQMVGRSGRPQYDKSGKAIIITDHKNLQL 1199
Query: 894 YLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGL 953
YLSL N+QL IES + + + +NAEIVL +QN +A NW+ +TY+YIRML+ P+LYG+
Sbjct: 1200 YLSLNNEQLFIESTLLHNIVNIINAEIVLKNIQNMDDAMNWLEHTYMYIRMLKCPSLYGV 1259
Score = 644 (231.8 bits), Expect = 1.9e-246, Sum P(8) = 1.9e-246
Identities = 120/294 (40%), Positives = 191/294 (64%)
Query: 967 RRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGD 1026
R +++++ IL++ +L+KY++K T +G+I+SYYY+ + +I YN+ L +
Sbjct: 1350 RMYNILYSCFLILEKYDLIKYNKKLNTVSSTYIGKISSYYYVDYKSIDIYNKKLNKYTNE 1409
Query: 1027 IELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLK 1086
I+L ++F++S EFK + +R +EK EL+ +++++PIPVKES+ P KIN+LLQ Y+S +
Sbjct: 1410 IDLLKIFTMSNEFKNIFIRDEEKTELSIIMEKLPIPVKESINIPYTKINILLQLYLSNII 1469
Query: 1087 LEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQ 1146
L G + +DMV+I Q+A R+ R+ FEI LK+ L + L KM+ +RMWS TPLRQ
Sbjct: 1470 LNGYIINADMVYIHQNALRIFRSFFEISLKKNSYNLIKLTLKFCKMIERRMWSTMTPLRQ 1529
Query: 1147 FNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQ 1206
F + E++ +EKK+ ++ Y ++ E + + K+ + ++K VH FPKL L A++Q
Sbjct: 1530 FGLLSTELIRIIEKKNITFKNYLTMNLNEYITIFKNKKIAKNIYKLVHHFPKLELNAYIQ 1589
Query: 1207 PITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQY 1260
PI +LKV+L I PDF+++ K HGY FWV V D E ILH++ F LKK Y
Sbjct: 1590 PINHKILKVDLNIAPDFIYNPKYHGYFMLFWVFVFDISNESILHYDLFTLKKNY 1643
Score = 388 (141.6 bits), Expect = 1.9e-246, Sum P(8) = 1.9e-246
Identities = 82/190 (43%), Positives = 123/190 (64%)
Query: 472 PNE-KLIKISEMPEWAQPAFK--GMTQLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNV 527
P E KLI I+E+PEW F +T+LN +QS+VY A + +N+L+CAPTG+GKTN+
Sbjct: 688 PEEIKLIHINELPEWTHEVFSCVNITKLNPIQSKVYDVAFNKYEENMLICAPTGSGKTNI 747
Query: 528 AVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGD 587
A+L IL + R G+ N ++KIVY++PMKALV E V + + RL+ ++KV EL+GD
Sbjct: 748 ALLCILNVINSYRLTSGNINRKDFKIVYISPMKALVNEQVQSFNLRLKCMNIKVSELTGD 807
Query: 588 QTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIV 647
L+ ++++++QIIV TPEK+D+I+RK ++ +K RG VLESI+
Sbjct: 808 VNLSTKELDDSQIIVMTPEKFDVISRKWNEKILLHKIKLIIFDEIHLLNEMRGNVLESII 867
Query: 648 ARTVRQIETT 657
AR R ++ T
Sbjct: 868 ARINRYMDNT 877
Score = 264 (98.0 bits), Expect = 1.2e-92, Sum P(7) = 1.2e-92
Identities = 66/259 (25%), Positives = 134/259 (51%)
Query: 778 QSHT-DMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNL 836
+ H D + L+ + G H MT ++++VE LF +Q+L+ + + +N+
Sbjct: 2287 EEHVFDYINDKMLRQFMKKGICYLHNNMTEIEKKIVEILFDKKTIQILIVSYDYIYSLNV 2346
Query: 837 PAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLS 896
A+ VII T I + + S +I++M+ AGR D+ I T ++ YY +
Sbjct: 2347 YANNVIILDTIITHFHNNKEEDYSIQNILEMISYAGRQNEDTKAFVYIYTYITKKEYYKN 2406
Query: 897 LMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPE 956
+ + L +ES L + LN EIV+ T++N ++A +W+ +++ Y R+ +NP YGL
Sbjct: 2407 FIYEPLTVESNIEDNLPNFLNNEIVMSTIENYQDAIDWLTWSFFYRRIKKNPNYYGLKG- 2465
Query: 957 VLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTY 1016
+ E I+ + ++L+ IL N + + ++ + +LG I+S+Y + + I +
Sbjct: 2466 ISNEHIS--DYLSELIENNMEILSFANCINIEEQTMDIKPCNLGIISSFYNLDYHIIHFF 2523
Query: 1017 NEHLKPTMGDIELCRLFSL 1035
N+++ ++ ++ R+F +
Sbjct: 2524 NQYVL-SLKTLKKSRIFEI 2541
Score = 230 (86.0 bits), Expect = 1.9e-246, Sum P(8) = 1.9e-246
Identities = 52/136 (38%), Positives = 84/136 (61%)
Query: 260 LNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKILAEGDDREVENKLLYHLQFDKF 319
LN+ ID++WLQR++++ F DP C +EVL +L D +E ENKL++ L+++ F
Sbjct: 363 LNINVIDSHWLQRELNKIFP---DPSLCLDKEKEVLNVLNIYDIQESENKLMHILKYENF 419
Query: 320 SLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEEMMGL--GPDLAAILDQLHATRATAKE 377
+ + L++NR K+ +CT L +AQ +EE+++I++EM G D ILD+L + K
Sbjct: 420 HIARVLIKNRWKIYYCTLLGQAQTEEEKEEIKKEMKKTEEGQD---ILDELCNFKNVRKN 476
Query: 378 RQKNLEKSIREEARRL 393
+Q K IR+EA L
Sbjct: 477 KQSEFSKIIRKEADNL 492
Score = 131 (51.2 bits), Expect = 1.9e-246, Sum P(8) = 1.9e-246
Identities = 29/82 (35%), Positives = 50/82 (60%)
Query: 96 YQPKTKETRAAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLL 155
Y+P TK T Y ++S I+ LG +I++ A +EIL +LKN+ + N +KKK++E L
Sbjct: 113 YKPTTKYTEEIYTKLMSKIRFLLGDNTGDIINSACNEILYILKNEELNNEEKKKQVESEL 172
Query: 156 NP-IPNHVFDQLVSIGKLITDY 176
I + +F ++ ++ K I D+
Sbjct: 173 EIYINDDIFIEINNLSKEIYDF 194
Score = 114 (45.2 bits), Expect = 1.9e-246, Sum P(8) = 1.9e-246
Identities = 24/51 (47%), Positives = 35/51 (68%)
Query: 9 AEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDR 59
AE + +FK++EYR NS+LVL + +T EPTGE ESL G++ + GD+
Sbjct: 2 AEEYEKFKRFEYRMNSNLVLQREGPISNTKEPTGESESLVGRLKYK-MGDK 51
Score = 107 (42.7 bits), Expect = 8.4e-63, Sum P(7) = 8.4e-63
Identities = 26/105 (24%), Positives = 53/105 (50%)
Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDII 611
KIVY+AP+ ++ + N + +D+K+ L+GD + + ++ II++ P +D I
Sbjct: 1834 KIVYIAPLDDVIIKTFKNWQAMKKTFDLKMCILTGDIQIDMKLLQTHHIILSNPSNYDNI 1893
Query: 612 TRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIET 656
++K + Q V +G ++E +++R +R I T
Sbjct: 1894 SKKWRRKKILQTVSFYIFDHMELLDTVQGGIMEILISR-IRYIST 1937
Score = 81 (33.6 bits), Expect = 1.9e-246, Sum P(8) = 1.9e-246
Identities = 27/87 (31%), Positives = 42/87 (48%)
Query: 422 QLLDLDTLAFQQGG--LFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLD-------- 471
+ +DL+ L ++ +F N++ LP S+R K Y+EI + +MK +D
Sbjct: 622 KFIDLEKLETKEKNKDIFF-NKEVILPPESKRIERKEYDEIIISSMKDNKMDGMKRTKNN 680
Query: 472 -------PNE-KLIKISEMPEWAQPAF 490
P E KLI I+E+PEW F
Sbjct: 681 KMNYYTSPEEIKLIHINELPEWTHEVF 707
Score = 79 (32.9 bits), Expect = 1.2e-181, Sum P(7) = 1.2e-181
Identities = 64/301 (21%), Positives = 126/301 (41%)
Query: 1015 TYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQD-EKMELAKLLDRVPIPVKESLEEPSAK 1073
TY E LK ++ + + ++ + T +D +K + LL + +P+ + K
Sbjct: 2575 TY-EFLKLSINNENTLKNANIEDNLNKDTKSEDYKKDQYINLLQFMSVPMYFTSH---LK 2630
Query: 1074 INVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMV 1133
+LLQA+I + L L+ + + A +L+ +L +++ + +S+M+
Sbjct: 2631 AFILLQAHIHRYSLP-LNYIQETKTVLLKAYKLINSLIDVISSNNILNFCLFVMEVSQML 2689
Query: 1134 TKRMWSV-QTPLRQFNGIPNEILMKLEKKDFAWERYYDL-----SPQELGELIRF--PKM 1185
T+ M S Q+ L Q ++ K D YDL P+++ L++ K
Sbjct: 2690 TQSMKSTDQSNLYQLPHFDEHLIKKAN--DLEILDVYDLINAEDEPRDI--LLKHLNEKQ 2745
Query: 1186 GRTLHKFVHQFPKLILAAHVQPITRT-----VLKVELTITPDFLWDDKV---HGYVEPF- 1236
+ + FP +I + + ++ + ++ LTI D L DD V H PF
Sbjct: 2746 RSEIANVCNIFP-IIEVQYEIDLDKSYKVNEIAQLNLTIERD-LTDDAVIFAHSLYLPFE 2803
Query: 1237 -----WVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWL 1291
W+++ +L + L K + +NF +P +P I V++D ++
Sbjct: 2804 KEEMWWIVIGIKKMNLLLSIKKLSLLKSV--NNIKINFELPD-KPNTYDVVIYVINDCYV 2860
Query: 1292 G 1292
G
Sbjct: 2861 G 2861
Score = 74 (31.1 bits), Expect = 1.9e-246, Sum P(8) = 1.9e-246
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 1263 EDHSLNFTVPIYEPLPPQYFIRVVSDKWL 1291
+DH L F +PI + P Y ++V+SDKWL
Sbjct: 1671 DDHVLTFFLPINDN--PFYIVKVISDKWL 1697
Score = 60 (26.2 bits), Expect = 1.2e-179, Sum P(7) = 1.2e-179
Identities = 43/198 (21%), Positives = 85/198 (42%)
Query: 951 YGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKY-----DRKSGYFQVTDLGRIASY 1005
Y L ++E T+ + L+++ ++ NN++ + + Q ++
Sbjct: 2642 YSLPLNYIQETKTVLLKAYKLINSLIDVISSNNILNFCLFVMEVSQMLTQSMKSTDQSNL 2701
Query: 1006 YYISHGTISTYNEHLKPTMGDIELCRLFSL---SEEFKYVTVRQ-DEKM--ELAKLLDRV 1059
Y + H ++EHL D+E+ ++ L +E + + ++ +EK E+A + +
Sbjct: 2702 YQLPH-----FDEHLIKKANDLEILDVYDLINAEDEPRDILLKHLNEKQRSEIANVCNIF 2756
Query: 1060 PI-PVKESLE-EPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKR 1117
PI V+ ++ + S K+N + Q L +E LT D V S L FE +
Sbjct: 2757 PIIEVQYEIDLDKSYKVNEIAQL---NLTIER-DLTDDAVIFAHS----LYLPFEKE-EM 2807
Query: 1118 GWAQLAEKALNLSKMVTK 1135
W + K +NL + K
Sbjct: 2808 WWIVIGIKKMNLLLSIKK 2825
Score = 44 (20.5 bits), Expect = 9.3e-171, Sum P(5) = 9.3e-171
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 524 KTNVAVLTILQQLALNRN------DDGSFNH-SNYKI 553
K N+ ++ +++A+NRN DD +N SN KI
Sbjct: 59 KKNIMLVQDNKEMAINRNKRKDIFDDDKYNRRSNKKI 95
Score = 38 (18.4 bits), Expect = 4.9e-25, Sum P(4) = 4.9e-25
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 136 VLKNDA-VKNPDKKKEIEKLLNPIPNHVFDQL 166
+L N + N KK +K+L + ++FD +
Sbjct: 1883 ILSNPSNYDNISKKWRRKKILQTVSFYIFDHM 1914
>UNIPROTKB|F1SU44 [details] [associations]
symbol:F1SU44 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
GeneTree:ENSGT00640000091272 GO:GO:0008026 EMBL:CU896688
Ensembl:ENSSSCT00000008903 OMA:NETIATY Uniprot:F1SU44
Length = 1027
Score = 2093 (741.8 bits), Expect = 1.9e-245, Sum P(2) = 1.9e-245
Identities = 428/787 (54%), Positives = 556/787 (70%)
Query: 260 LNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKIL-AEGDDREVENKLLYHLQFDK 318
L+ +DIDA+WLQR++S+ +D I QK A+EVL+IL DDRE EN+L+ L F+
Sbjct: 258 LHPRDIDAFWLQRQLSRFYDDAI---VSQKKADEVLEILKTASDDRECENQLVLLLGFNT 314
Query: 319 FSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKER 378
F IK L ++R+ +++CT LA AQ + E+++I +M P+L+ L QLH T KE
Sbjct: 315 FDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEA-DPELSKFLYQLHETE---KED 370
Query: 379 QKNLEKSIREEARRLKDESASXXXXXXXXXXXXXXXXXWLGQRQLLDLDTLAFQQGGLFM 438
E+S RE R+ + ++ L RQ+LDL+ L F QG FM
Sbjct: 371 LIREERSRRERVRQSRMDTDLETMDLDQGGEA-------LAPRQVLDLEDLVFTQGSHFM 423
Query: 439 ANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNR 498
AN++C LP+GS R KGYEE+HVPA+K KP E+L+ + ++P++AQ F+G LNR
Sbjct: 424 ANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFSSEEQLLPVEKLPKYAQAGFEGFKTLNR 483
Query: 499 VQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558
+QS++Y++AL + +N+LLCAPTGAGKTNVA++ +L+++ + N DG+ N ++KI+Y+AP
Sbjct: 484 IQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAP 543
Query: 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDR 618
M++LV E+VG+ RL Y + V EL+GD L +++I TQIIV TPEKWDIITRK G+R
Sbjct: 544 MRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGER 603
Query: 619 TYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVAL 678
TYTQLV+ +RGPVLE++VAR +R IE T+E +RL+GLSATLPNYEDVA
Sbjct: 604 TYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVAT 663
Query: 679 FLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLI 738
FLRV+ KGLFYFDNS+RPVPL Q Y+GI KK ++RFQ+MN++ YEK++ AGK+QVL+
Sbjct: 664 FLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLV 723
Query: 739 FVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFA 798
FVHSRKET KTARAIRD LE DTLG FL+E S S E+L++ + K+ +LKDLLPYGFA
Sbjct: 724 FVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFA 783
Query: 799 IHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTE 858
IHHAGMTR DR LVEDLF D H+QVLVSTATLAWGVNLPAHTVIIKGTQ+Y+PEKG WTE
Sbjct: 784 IHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTE 843
Query: 859 LSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNA 918
L LDI+QMLGRAGRPQYD+ GEGI+IT H EL+YYLSL+NQQLPIESQ V+KL D LNA
Sbjct: 844 LGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVAKLPDMLNA 903
Query: 919 EIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATI 978
EIVLG VQNAK G + +L + +G L I + DL T
Sbjct: 904 EIVLGNVQNAKRGLG-SGSVVILCVVLWATSTWGPPTLGLTSPILMCRCFLDLSITCLNC 962
Query: 979 LDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEE 1038
L + Y S + VT+LGRIAS+YYI++ T+ TYN+ LKPT+ +IEL R+FSLS E
Sbjct: 963 LLLGTVEIYHAISVH--VTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSE 1020
Query: 1039 FKYVTVR 1045
FK +TVR
Sbjct: 1021 FKNITVR 1027
Score = 295 (108.9 bits), Expect = 1.9e-245, Sum P(2) = 1.9e-245
Identities = 77/182 (42%), Positives = 102/182 (56%)
Query: 9 AEAHARFKQYEYRANSSLVLTTDSRPRDT---HEPTGEPESLWGKIDPRSFGDRAFRGRP 65
A+ AR QYEY+ANS+LVL D D EPTGE SL GK++ GD+A R +P
Sbjct: 2 ADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTKP 61
Query: 66 PXXXXXXXXXXXXXXXRDPDADAAAA----SEGT-------YQPKTKETRAAYEAMLSVI 114
R D + SEG Y+PKTKETR YE +LS I
Sbjct: 62 QMQEERRAKRRKRDEDRH-DINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI 120
Query: 115 QQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLVSIGKLIT 174
Q LG QP +I+ GAADE+LAVLKN+ +++ +++KEI+ LL + + LV++GK IT
Sbjct: 121 QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKIT 180
Query: 175 DY 176
DY
Sbjct: 181 DY 182
>SGD|S000000974 [details] [associations]
symbol:BRR2 "RNA-dependent ATPase RNA helicase (DEIH box)"
species:4932 "Saccharomyces cerevisiae" [GO:0005682 "U5 snRNP"
evidence=IDA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA;IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000388 "spliceosome
conformational change to release U4 (or U4atac) and U1 (or U11)"
evidence=IMP] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 SGD:S000000974
GO:GO:0005524 GO:GO:0005681 GO:GO:0005682 GO:GO:0003676
EMBL:BK006939 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104562 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 eggNOG:COG1204 HOGENOM:HOG000157749
EMBL:U18922 KO:K12854 OrthoDB:EOG4MD17F GO:GO:0046540 GO:GO:0004004
PIR:S50675 RefSeq:NP_011099.1 PDB:3HIB PDB:3IM1 PDB:3IM2
PDBsum:3HIB PDBsum:3IM1 PDBsum:3IM2 ProteinModelPortal:P32639
SMR:P32639 DIP:DIP-850N IntAct:P32639 MINT:MINT-606933
STRING:P32639 PaxDb:P32639 EnsemblFungi:YER172C GeneID:856919
KEGG:sce:YER172C CYGD:YER172c OMA:RDTHESS EvolutionaryTrace:P32639
NextBio:983377 Genevestigator:P32639 GermOnline:YER172C
GO:GO:0000388 Uniprot:P32639
Length = 2163
Score = 2162 (766.1 bits), Expect = 3.3e-243, Sum P(3) = 3.3e-243
Identities = 424/877 (48%), Positives = 592/877 (67%)
Query: 423 LLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEM 482
++DL+ + F + M K LPEGS + Y+EIH+PA KP+ E L +I+ +
Sbjct: 426 VIDLEKIKFDESSKLMTVTKVSLPEGSFKRVKPQYDEIHIPAPS-KPVIDYE-LKEITSL 483
Query: 483 PEWAQPAFKGM--TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNR 540
P+W Q AF T LN +QS+V+ +A N+L+CAPTG+GKTN+A+LT+L+ L+ +
Sbjct: 484 PDWCQEAFPSSETTSLNPIQSKVFHAAFEGDSNMLICAPTGSGKTNIALLTVLKALSHHY 543
Query: 541 NDDGS-FNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQ 599
N N S +KIVY+AP+KALV E V RL +KV EL+GD L+R+QI+ETQ
Sbjct: 544 NPKTKKLNLSAFKIVYIAPLKALVQEQVREFQRRLAFLGIKVAELTGDSRLSRKQIDETQ 603
Query: 600 IIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKE 659
++V+TPEKWDI TR S + +LV+ +RGPVLESIVART + +E
Sbjct: 604 VLVSTPEKWDITTRNSNNLAIVELVRLLIIDEIHLLHDDRGPVLESIVARTFWASKYGQE 663
Query: 660 HIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLM 719
+ R++GLSATLPNYEDV FLRV E GLFYFD+S+RP PLSQQ+ GI+ + L++ + M
Sbjct: 664 YPRIIGLSATLPNYEDVGRFLRVPKE-GLFYFDSSFRPCPLSQQFCGIKERNSLKKLKAM 722
Query: 720 NDLCYEKVV-AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQ 778
ND CYEKV+ ++ +Q+++FVHSRKET++TA +++ E + + K D+ S++IL+
Sbjct: 723 NDACYEKVLESINEGNQIIVFVHSRKETSRTATWLKNKFAEENITHKLTKNDAGSKQILK 782
Query: 779 SHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPA 838
+ V L+ L+ G HHAG+TR DR L EDLF DG +QVLV TATLAWGVNLPA
Sbjct: 783 TEAANVLDPSLRKLIESGIGTHHAGLTRSDRSLSEDLFADGLLQVLVCTATLAWGVNLPA 842
Query: 839 HTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLM 898
HTVIIKGT +Y+PEKG+W +LSP D++QMLGRAGRP+YD++GEGIIIT S ++YYLS++
Sbjct: 843 HTVIIKGTDVYSPEKGSWEQLSPQDVLQMLGRAGRPRYDTFGEGIIITDQSNVQYYLSVL 902
Query: 899 NQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVL 958
NQQLPIESQFVSKL D LNAE+V G ++ +A NW+ YTYLY+RML +P LY + P++
Sbjct: 903 NQQLPIESQFVSKLVDNLNAEVVAGNIKCRNDAVNWLAYTYLYVRMLASPMLYKV-PDI- 960
Query: 959 KEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNE 1018
D L + R LVH+A IL LV YD ++ + TDLG IAS +YI+H ++ YN
Sbjct: 961 SSDGQLKKFRESLVHSALCILKEQELVLYDAENDVIEATDLGNIASSFYINHASMDVYNR 1020
Query: 1019 HLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLL 1078
L I+L R+FS+SEEFKYV+VR +EK EL +LL++ PIP++E +++P AK+NVLL
Sbjct: 1021 ELDEHTTQIDLFRIFSMSEEFKYVSVRYEEKRELKQLLEKAPIPIREDIDDPLAKVNVLL 1080
Query: 1079 QAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMW 1138
Q+Y SQLK EG +L SD+VFI Q+AGRLLRA+FEI LKRGW LNL K T +MW
Sbjct: 1081 QSYFSQLKFEGFALNSDIVFIHQNAGRLLRAMFEICLKRGWGHPTRMLLNLCKSATTKMW 1140
Query: 1139 SVQTPLRQFNGIPNEILMKLEKKDFAWERYYDL-SPQELGELIRFPKMGRTLHKFVHQFP 1197
PLRQF P E++ +LE W Y L +P E+G IR K G+ ++ + +FP
Sbjct: 1141 PTNCPLRQFKTCPVEVIKRLEASTVPWGDYLQLETPAEVGRAIRSEKYGKQVYDLLKRFP 1200
Query: 1198 KLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLK 1257
K+ + + QPITR+V++ + I D++WD VHG +EPF +++ED DG+ IL+++ +
Sbjct: 1201 KMSVTCNAQPITRSVMRFNIEIIADWIWDMNVHGSLEPFLLMLEDTDGDSILYYDVLFIT 1260
Query: 1258 KQYIEEDHSLNFTVPIYEP----LPPQYFIRVVSDKW 1290
+ + +L+FT + + LPP +F+ ++S+ W
Sbjct: 1261 PDIVGHEFTLSFTYELKQHNQNNLPPNFFLTLISENW 1297
Score = 516 (186.7 bits), Expect = 6.1e-57, Sum P(3) = 6.1e-57
Identities = 192/753 (25%), Positives = 352/753 (46%)
Query: 497 NRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYV 556
N++QS+V++S +S D++ + + G GKT +A L +L N+ + VY+
Sbjct: 1349 NKIQSQVFESLYNSNDSVFVGSGKGTGKTAMAELALLNHWRQNKG----------RAVYI 1398
Query: 557 APMKALVAEVVGNLSNRLQ-MYDVKV-RELSGDQTLTRQQIEETQIIVTTPEKWDIITRK 614
P + ++ + + R + K+ +L D +L + + ++ +++ TP ++++++R+
Sbjct: 1399 NPSGEKIDFLLSDWNKRFSHLAGGKIINKLGNDPSLNLKLLAKSHVLLATPVQFELLSRR 1458
Query: 615 SGDRTYTQLVKXXXXXXXXXXXXN-RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY 673
R Q ++ G V E++++R + ++ IR V LS L N
Sbjct: 1459 WRQRKNIQSLELMIYDDAHEISQGVYGAVYETLISRMIFIATQLEKKIRFVCLSNCLANA 1518
Query: 674 EDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQL---MNDLCYEKVVAV 730
D + + + ++ F S R PL I IQ K ++ M + +E A
Sbjct: 1519 RDFGEWAGMT-KSNIYNFSPSERIEPLE---INIQSFKDVEHISFNFSMLQMAFEASAAA 1574
Query: 731 AG-KHQVLIFVHSRKETAKTARAIR--DTALENDTLGRFLKEDSVSREILQSHTDMVKSN 787
AG ++ +F+ SRK+ + A A A+E D L +V E + + + +
Sbjct: 1575 AGNRNSSSVFLPSRKDCMEVASAFMKFSKAIEWDML-------NVEEEQIVPYIEKLTDG 1627
Query: 788 DLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVL-VSTATLAWGVNLPAHTVIIKGT 846
L+ L +G I + GM D ++V+ L+ G V VL +S A+ VII GT
Sbjct: 1628 HLRAPLKHGVGILYKGMASNDERIVKRLYEYGAVSVLLISKDCSAFACK--TDEVIILGT 1685
Query: 847 QIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSY-GEGIIITGHSELRYYLSLMNQQLPIE 905
+Y+ + + + ++++M+G A DS G+ +I+T H+ YY + + LP E
Sbjct: 1686 NLYDGAEHKYMPYTINELLEMVGLASGN--DSMAGKVLILTSHNMKAYYKKFLIEPLPTE 1743
Query: 906 SQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGL---APEVLKEDI 962
S + D LN EI +Q+ ++ +W Y+Y Y R+ NP+ YG+ +P + +
Sbjct: 1744 SYLQYIIHDTLNNEIANSIIQSKQDCVDWFTYSYFYRRIHVNPSYYGVRDTSPHGISVFL 1803
Query: 963 T-LGERRA-DLVHTAATILDRNNL-VKYDRKSGYFQVTDL------GRIASYYYISHGTI 1013
+ L E DLV ++ +D V + G + T++ G IAS+Y +S TI
Sbjct: 1804 SNLVETCLNDLVESSFIEIDDTEAEVTAEVNGGDDEATEIISTLSNGLIASHYGVSFFTI 1863
Query: 1014 STYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPI--PVKESLEEPS 1071
++ L T + + S + EF+ V +R+ ++ L KL R+P+ P S S
Sbjct: 1864 QSFVSSLSNTSTLKNMLYVLSTAVEFESVPLRKGDRALLVKLSKRLPLRFPEHTSSGSVS 1923
Query: 1072 AKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSK 1131
K+ +LLQAY S+L+L + +D+ I + L+ + +I+ G+ A A++L++
Sbjct: 1924 FKVFLLLQAYFSRLELP-VDFQNDLKDILEKVVPLINVVVDILSANGYLN-ATTAMDLAQ 1981
Query: 1132 MVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYD---LSPQELGELIRFPKMGRT 1188
M+ + +W V PLRQ N+IL K K+ E YD L +E E++
Sbjct: 1982 MLIQGVWDVDNPLRQIPHFNNKILEKC--KEINVETVYDIMALEDEERDEILTLTDSQLA 2039
Query: 1189 -LHKFVHQFPKLILAAHVQPITRTVLKVELTIT 1220
+ FV+ +P + L + + V+ IT
Sbjct: 2040 QVAAFVNNYPNVELTYSLNNSDSLISGVKQKIT 2072
Score = 134 (52.2 bits), Expect = 3.3e-243, Sum P(3) = 3.3e-243
Identities = 41/140 (29%), Positives = 74/140 (52%)
Query: 259 SLNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKILA--EGDDREVENKLLYHLQF 316
S+ + ID ++LQRK+ + D Q L+E++L + E + +E KL+ L+F
Sbjct: 282 SVPIYSIDEFFLQRKLRSELGYK-DTSVIQDLSEKILNDIETLEHNPVALEQKLVDLLKF 340
Query: 317 DKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAK 376
+ SL +F+L+NR + W RLA++ + E IE+ M+ G L +++Q T
Sbjct: 341 ENISLAEFILKNRSTIFWGIRLAKSTENEIPNLIEK-MVAKG--LNDLVEQYKFRETTHS 397
Query: 377 ERQKNL--EKSIREEARRLK 394
+R+ + ++ EA+R K
Sbjct: 398 KRELDSGDDQPQSSEAKRTK 417
Score = 88 (36.0 bits), Expect = 3.3e-243, Sum P(3) = 3.3e-243
Identities = 28/89 (31%), Positives = 46/89 (51%)
Query: 96 YQPKTKETRAAYEAMLSVIQQQLGGQ-PLNIVSGAADEILAVLKNDAVKNPD-----KKK 149
Y PK YE +L + + LG P +++ G AD + LK + +N D +K+
Sbjct: 109 YYPKDPSNVETYEQILQWVTEVLGNDIPHDLIIGTADIFIRQLKENE-ENEDGNIEERKE 167
Query: 150 EIEKLLN-PIPNHVFDQLVSIGKLITDYQ 177
+I+ L I + F++LV + K ITDY+
Sbjct: 168 KIQHELGINIDSLKFNELVKLMKNITDYE 196
Score = 44 (20.5 bits), Expect = 9.3e-44, Sum P(2) = 9.3e-44
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 146 DKKKEIEKLLN--PIP--NHVFDQLVSIGKLITDY 176
++K+E+++LL PIP + D L + L+ Y
Sbjct: 1049 EEKRELKQLLEKAPIPIREDIDDPLAKVNVLLQSY 1083
Score = 38 (18.4 bits), Expect = 1.5e-225, Sum P(2) = 1.5e-225
Identities = 10/49 (20%), Positives = 20/49 (40%)
Query: 258 MSLNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKILAEGDDREV 306
+ +N+ + L + + D + P K A +L + D+ EV
Sbjct: 173 LGINIDSLKFNELVKLMKNITDYETHPDNSNKQAVAILADDEKSDEEEV 221
>CGD|CAL0001532 [details] [associations]
symbol:orf19.3098 species:5476 "Candida albicans" [GO:0005682
"U5 snRNP" evidence=IEA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0000388 "spliceosome conformational change to
release U4 (or U4atac) and U1 (or U11)" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 CGD:CAL0001532 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 KO:K12854 GO:GO:0008026 EMBL:AACQ01000086
EMBL:AACQ01000085 RefSeq:XP_715407.1 RefSeq:XP_715477.1
ProteinModelPortal:Q5A0Z8 STRING:Q5A0Z8 GeneID:3642881
GeneID:3642903 KEGG:cal:CaO19.10610 KEGG:cal:CaO19.3098
Uniprot:Q5A0Z8
Length = 1987
Score = 2145 (760.1 bits), Expect = 1.2e-232, Sum P(3) = 1.2e-232
Identities = 432/883 (48%), Positives = 595/883 (67%)
Query: 422 QLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISE 481
Q + LD + F + N + LPEG+ K Y+ I VPA L N++L+ IS
Sbjct: 302 QKISLDRIVFSTS---VENARVTLPEGTIHEVKKSYDTITVPAPAQS-LSDNDELLPIST 357
Query: 482 MPEWAQPAFKGM--TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALN 539
+P+WAQ AF T NR+QS++Y A + +N+L+CAPTGAGKTNVA+LTIL+ +
Sbjct: 358 LPDWAQEAFPKTETTTFNRIQSKIYNQAFETDNNLLICAPTGAGKTNVAMLTILRTIENF 417
Query: 540 RNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL-QMYDVKVRELSGDQTLTRQQIEET 598
RN+ G N+KIVY+AP+KALV E + RL +Y V V EL+GD +L++QQI ET
Sbjct: 418 RNN-GHIQLKNFKIVYIAPLKALVQEQMREFQRRLTSVYGVVVNELTGDSSLSKQQIAET 476
Query: 599 QIIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTK 658
QIIVTTPEKWDIITRK D +Y +LVK RGPVLES+V+R +R+ ETT
Sbjct: 477 QIIVTTPEKWDIITRK--DPSYVKLVKLMIIDEIHLLHDERGPVLESLVSRAIRKSETTG 534
Query: 659 EHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQL 718
IR+VGLSATLPNY DVA F+R E GLFYFD SYRP PL Q YIG++ +K ++R
Sbjct: 535 SDIRIVGLSATLPNYADVAKFIRAKPE-GLFYFDASYRPCPLEQVYIGVKEQKAIKRIAA 593
Query: 719 MNDLCYEKV-VAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREIL 777
MN+ CY+++ ++ +HQ++IFVHSRKET TA+ + + L+ D ++++ V +EIL
Sbjct: 594 MNEACYDRMHQSLQDRHQLIIFVHSRKETFTTAKYLMEK-LDID----IVEQEGV-KEIL 647
Query: 778 QSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLP 837
+ + + + LK+++P GF IHHAG+T+ DR +VEDLF G+++VLVSTATLAWGVNLP
Sbjct: 648 KQEGESMSNPKLKEVIPRGFGIHHAGLTKKDRGVVEDLFAQGYLRVLVSTATLAWGVNLP 707
Query: 838 AHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSL 897
AHTVIIKGT+ Y+PE GAW +LSP DI+QMLGRAGRP+YD GEGIIIT E++YYL++
Sbjct: 708 AHTVIIKGTETYSPESGAWVQLSPQDILQMLGRAGRPRYDKNGEGIIITSQDEVQYYLAI 767
Query: 898 MNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGL-APE 956
+NQQLPIESQ + KL D +NAEIV G++ +E W+ YTY ++RML++PALYG+ A
Sbjct: 768 LNQQLPIESQLIHKLVDNINAEIVAGSITTIEEGIEWLTYTYFFVRMLQSPALYGVEATY 827
Query: 957 VLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTY 1016
D TL RRADL++TA IL N LV Y+ G T+LG+IAS++YI+ TI+ Y
Sbjct: 828 DFTNDPTLYNRRADLIYTAFCILHENKLVVYNAALGSVASTELGKIASHFYINFETINLY 887
Query: 1017 NEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINV 1076
+ LKP + ++ +FS S EFKYV VRQ+E++E++KL+++ PIP+KE EP AKIN+
Sbjct: 888 GKMLKPWHSETDILSVFSNSGEFKYVPVRQEERLEISKLMEKCPIPIKEQPNEPLAKINI 947
Query: 1077 LLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKR 1136
LLQ +IS+L LEG +L +DM++ITQSAGRLLRAL+EI L + W+ LA+ LNL KMV KR
Sbjct: 948 LLQTFISRLSLEGYALIADMIYITQSAGRLLRALYEIALLQKWSSLAKSILNLCKMVDKR 1007
Query: 1137 MWSVQTPLRQFNGI-PNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQ 1195
+W +PLRQF + P++I+ E W RY+ L+P EL + + +++
Sbjct: 1008 LWLNNSPLRQFGDVVPHQIIRASEMSHLPWIRYFHLNPDELAVALNLKGNAQIAKQYIDS 1067
Query: 1196 FPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFM 1255
FPK+ + VQPIT L++++ + P++ W +HG E F V +E DG +LH E F+
Sbjct: 1068 FPKVSIQYMVQPITEQFLRIQVEVIPEWSWISAIHGSQEIFNVFLEGCDGNKLLHSEQFI 1127
Query: 1256 LKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGVLVCVW 1298
+K++ I + H L F VP P P Y + VS+KW+ C W
Sbjct: 1128 VKRKNINKPHILEFFVPFVAPPLPNYILSFVSEKWVH---CTW 1167
Score = 439 (159.6 bits), Expect = 4.6e-40, Sum P(3) = 4.6e-40
Identities = 178/747 (23%), Positives = 341/747 (45%)
Query: 547 NHSNYK---IVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVT 603
NH N K IVY+ P + LV ++ S Y+ ++ LSG+ + ++ +I+
Sbjct: 1245 NHWNNKKGRIVYINPCQELVDKLFKKWSTFFSSYEKEINVLSGNLREDSASVNQSHLILA 1304
Query: 604 TPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEH--I 661
TPE+++ ++++ R + + + E +V R VR + + + +
Sbjct: 1305 TPEQFNCLSKRWKTRKAFRSIDLFIWDDLHLVGSDVH--YEMLVTR-VRMLTSQWDDYKL 1361
Query: 662 RLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMND 721
R+V LS+ + N D+A ++ V + F F R +++ I + V+ ++ D
Sbjct: 1362 RIVALSSPVLNSRDIAEWIGV-AKSETFNFAPHSRENRITE--IKLSVESSDNTVKIYKD 1418
Query: 722 LCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHT 781
L KV + G LIF S + A ++ +EN+ + D + L+ +
Sbjct: 1419 LA--KVNS--GLRNTLIFAPSYIHAFEMAHSM----VENNQAQEWRSVDLLK---LEKYI 1467
Query: 782 DMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTV 841
+++ LK+LLP G A+ ++GM R DR +VE LF + VL T + A+ V
Sbjct: 1468 SKIQNPLLKNLLPKGIAVFYSGMARVDRLIVERLFESKSIGVLFCTMDTSKFAPT-ANNV 1526
Query: 842 IIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQ 901
+ GT++Y+ + + + D+ +M+G D G I T + +Y S +N
Sbjct: 1527 FVAGTRVYDGHEHRFLDYPLNDLYEMVGCC----QDG-GVVHIYTTSQMVEFYSSFLNSG 1581
Query: 902 LPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKED 961
L +ES + L + + G ++ + + + +T+ Y R+L+NP+ Y L EV
Sbjct: 1582 LAVESLLSNSLHEFFMDAVANGIIKQRQNCIDVLTFTFFYRRLLKNPSFYDLK-EVSNSG 1640
Query: 962 ITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNE-HL 1020
I+ ++L+ + ++ ++ + + + IAS+Y + T+S ++
Sbjct: 1641 IST--YLSELIESVFDDFNKEEFIEEEDEGDTISPLNKIVIASHYNSTFETVSNLSKLSN 1698
Query: 1021 KPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPV-KESLEEPSAKINVLLQ 1079
K + DI + + EF + VR+ E L KL ++PI ++ E P K +LLQ
Sbjct: 1699 KSKLKDI--FHALTNATEFSDLPVREGEDALLIKLQTKLPIKYSQDDYESPFFKAFILLQ 1756
Query: 1080 AYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWS 1139
A+IS++ + L D + ++L A +I+ G + A++LS+M+ + +WS
Sbjct: 1757 AHISRISIP-FDLRQDQKSVLTRVLQILNAAIDILSSDGSLNVL-LAMDLSQMIVQAVWS 1814
Query: 1140 VQTPLRQFNGIPNEILMKLEKKDFAWERYYD---LSPQELGELIRFPKMG-RTLHKFVHQ 1195
PLRQ NEIL + + + E YD L +E E+++ P + FV+
Sbjct: 1815 SDNPLRQVPRFTNEILARCTQHNV--ETVYDIMSLEDEERNEILQLPDQELNEVASFVNS 1872
Query: 1196 FPKLILAAHVQP-ITRTVLK-VELTITPDFLWDD----KVHGYV----EPFWVIVEDNDG 1245
+P + L+ ++ +T K V +TI D + K + E +W++V D+
Sbjct: 1873 YPNIELSYEMKGGVTSNESKFVTVTIDRDEEIESLEVVKNENFPVTKQENWWIVVGDSKT 1932
Query: 1246 EYILHHEYFMLKKQYIEEDHSLNFTVP 1272
++ + ++K I + + FT+P
Sbjct: 1933 RHLYGIKKVNIQK--ISQSFEIEFTIP 1957
Score = 236 (88.1 bits), Expect = 2.4e-18, Sum P(3) = 2.4e-18
Identities = 90/378 (23%), Positives = 176/378 (46%)
Query: 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKI 553
T N++QS + + +S +N+ + + G GKT +A L IL +N+ +I
Sbjct: 1205 THFNKLQSSTFDTVYNSENNVFIGSSKGDGKTVLAELAILNH----------WNNKKGRI 1254
Query: 554 VYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITR 613
VY+ P + LV ++ S Y+ ++ LSG+ + ++ +I+ TPE+++ +++
Sbjct: 1255 VYINPCQELVDKLFKKWSTFFSSYEKEINVLSGNLREDSASVNQSHLILATPEQFNCLSK 1314
Query: 614 KSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEH--IRLVGLSATLP 671
+ R + + + E +V R VR + + + +R+V LS+ +
Sbjct: 1315 RWKTRKAFRSIDLFIWDDLHLVGSDVH--YEMLVTR-VRMLTSQWDDYKLRIVALSSPVL 1371
Query: 672 NYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVA 731
N D+A ++ V + F F R +++ I + V+ ++ DL KV +
Sbjct: 1372 NSRDIAEWIGV-AKSETFNFAPHSRENRITE--IKLSVESSDNTVKIYKDLA--KVNS-- 1424
Query: 732 GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791
G LIF S + A ++ +EN+ + D + L+ + +++ LK+
Sbjct: 1425 GLRNTLIFAPSYIHAFEMAHSM----VENNQAQEWRSVDLLK---LEKYISKIQNPLLKN 1477
Query: 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNP 851
LLP G A+ ++GM R DR +VE LF + VL T + A+ V + GT++Y+
Sbjct: 1478 LLPKGIAVFYSGMARVDRLIVERLFESKSIGVLFCTMDTSKFAPT-ANNVFVAGTRVYDG 1536
Query: 852 EKGAWTELSPLDIMQMLG 869
+ + + D+ +M+G
Sbjct: 1537 HEHRFLDYPLNDLYEMVG 1554
Score = 74 (31.1 bits), Expect = 1.2e-232, Sum P(3) = 1.2e-232
Identities = 18/68 (26%), Positives = 35/68 (51%)
Query: 107 YEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNP-IPNHVFDQ 165
YE ++ I+ L ++ A++ L N + P+K+KE+E+LLN I + +
Sbjct: 63 YELFVTKIRSYLPDSSHEVIQSASEVASEQLSNRDISVPEKRKELEELLNASISDDDLHE 122
Query: 166 LVSIGKLI 173
L+++ I
Sbjct: 123 LINLSNSI 130
Score = 65 (27.9 bits), Expect = 1.2e-232, Sum P(3) = 1.2e-232
Identities = 27/107 (25%), Positives = 53/107 (49%)
Query: 280 QQIDPQQCQKLAEEVLKILAEGD-DR-EVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTR 337
QQI + + +V +LA+ D D ++++KL L I + +R ++V+ R
Sbjct: 195 QQIS--EFKHYGSQVFDLLADKDLDSLQLDSKLNELLDSKGMDFIVKCIEHRWRIVFSKR 252
Query: 338 LARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEK 384
L E ++ + +EM LG L +++++LH R+ E L++
Sbjct: 253 L----QTENKEPVIKEMEELG--LHSLINELHRKRSLDDETSNPLKR 293
>UNIPROTKB|F6Y2F0 [details] [associations]
symbol:ASCC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CTD:10973 GeneTree:ENSGT00700000104562 KO:K01529 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 GO:GO:0008026
Ensembl:ENSCAFT00000005717 EMBL:AAEX03008562 RefSeq:XP_854167.1
ProteinModelPortal:F6Y2F0 GeneID:475008 KEGG:cfa:475008 OMA:XAVYIAP
Uniprot:F6Y2F0
Length = 2202
Score = 2117 (750.3 bits), Expect = 6.0e-227, Sum P(3) = 6.0e-227
Identities = 414/868 (47%), Positives = 585/868 (67%)
Query: 437 FMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQL 496
F+A K LPEG QR NK YEE+ +P + P+ EK + I ++ E Q AFKGM +L
Sbjct: 418 FIAGAKMILPEGIQRENNKMYEEVKIPYSEPMPIGFEEKPVYIQDLDEIGQLAFKGMRRL 477
Query: 497 NRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYV 556
NR+QS V+++A ++ +N+L+CAPTGAGKTN+A+LT+L ++ G + +KIVYV
Sbjct: 478 NRIQSIVFETAYNTNENMLICAPTGAGKTNIAMLTVLHEIR-QHFQQGVIKKNEFKIVYV 536
Query: 557 APMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS- 615
APMKAL AE+ S RL+ + V+EL+GD L++ +I TQ++VTTPEKWD++TRKS
Sbjct: 537 APMKALAAEMTNYFSKRLEPLGIVVKELTGDMQLSKNEILRTQMLVTTPEKWDVVTRKSV 596
Query: 616 GDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYED 675
GD +Q+VK +RGPVLESIVART+RQ+E+T+ IR++GLSATLPNY D
Sbjct: 597 GDVALSQIVKLLILDEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLD 656
Query: 676 VALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKH 734
VA FL VN GLFYFD +RPVPL Q ++G++ +Q+ M+++CYE V+ V H
Sbjct: 657 VATFLHVNPCIGLFYFDGRFRPVPLGQTFLGVKSANKVQQLNNMDEVCYESVLKQVKAGH 716
Query: 735 QVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLP 794
QV++FVH+R T +TA ++ + A + + FL + ++ +++L P
Sbjct: 717 QVMVFVHARNATVRTAMSLIERAKNSGQISCFLPSQGSEYGHAEKQVQKSRNKQVRELFP 776
Query: 795 YGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKG 854
GF+IHHAGM R DR LVE+LF +GH++VLV TATLAWGVNLPAH VIIKGTQIY ++G
Sbjct: 777 DGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRG 836
Query: 855 AWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLAD 914
++ +L LD+MQ+ GRAGRPQ+D +GEGIIIT H +L +YL+L+ QQ PIESQF+ LAD
Sbjct: 837 SFVDLGILDVMQIFGRAGRPQFDRFGEGIIITTHDKLSHYLTLLTQQNPIESQFLESLAD 896
Query: 915 QLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHT 974
LNAEI LGTV N +EA WI YTYLY+RM NP +YG++ + + D TL + R LV
Sbjct: 897 NLNAEIALGTVTNVEEAVKWISYTYLYVRMRANPLVYGISHKAYQVDPTLAKHREQLVIE 956
Query: 975 AATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFS 1034
LD+ +++++ ++GYF TDLGR AS+YYI + TI T+NE + ++ + S
Sbjct: 957 VGRKLDKARMIRFEERTGYFSSTDLGRTASHYYIKYNTIETFNEFFDAHKTESDIFAIVS 1016
Query: 1035 LSEEFKYVTVRQDEKMELAKLLDRV-PIPVKESLEEPSAKINVLLQAYISQLKLEGLSLT 1093
+EEF + VR++E EL LL+ + +E KIN+LLQ YIS+ +++ SL
Sbjct: 1017 KAEEFDQIKVREEEIEELDALLNNFCELAAPGGVENSYGKINILLQTYISRGEMDSFSLI 1076
Query: 1094 SDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNE 1153
SD ++ Q+A R++RALFEI L++ W + + LNLSK++ KR+W +PLRQF+ +P
Sbjct: 1077 SDSAYVAQNAARIVRALFEIALRKRWPAMTYRLLNLSKVIDKRLWGWASPLRQFSVLPPH 1136
Query: 1154 ILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVL 1213
IL +LE+K+ ++ D+ E+G ++ +G + + VHQ P + + A +QPITRTVL
Sbjct: 1137 ILTRLEEKNLTVDKLKDMRKDEIGHMLHHVNIGLKVKQCVHQIPSVTMEASIQPITRTVL 1196
Query: 1214 KVELTITPDFLWDDKVHGYV-EPFWVIVEDNDGEYILHHEYFM-LKKQYI-EEDHSLNFT 1270
+V L+I PDF W+D+VHG V EP+W+ VED ++I H EYF+ LKKQ I +E L FT
Sbjct: 1197 RVTLSICPDFTWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFLVLKKQVISKEAQLLVFT 1256
Query: 1271 VPIYEPLPPQYFIRVVSDKWLGV-LVCV 1297
+PI+EPLP QY+IR VSD+WLG VC+
Sbjct: 1257 IPIFEPLPSQYYIRAVSDRWLGAEAVCI 1284
Score = 935 (334.2 bits), Expect = 4.9e-98, Sum P(3) = 4.9e-98
Identities = 236/691 (34%), Positives = 374/691 (54%)
Query: 472 PNEKLIKISEMPEWAQ--PAFKGM---TQLNRVQSRVYKSALSSADNILLCAPTGAGKTN 526
P+ +L+ + +P A A++ + + N VQ++++ + + N+LL APTG+GKT
Sbjct: 1298 PHTELLDLQPLPITALGCEAYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTV 1357
Query: 527 VAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVRELS 585
A L I + N+ + K VY+AP+KALV E + + R++ KV EL+
Sbjct: 1358 AAELAIFR--VFNK-------YPTSKAVYIAPLKALVRERMDDWKVRIEEKLGKKVIELT 1408
Query: 586 GDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLES 645
GD T + I + +IVTTPEKWD ++R +R Y + V RGPVLE
Sbjct: 1409 GDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRNYVKQVTILIIDEIHLLGEERGPVLEV 1468
Query: 646 IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYI 705
IV+RT T++ +R+VGLS L N D+A +L ++ + GLF F S RPVPL
Sbjct: 1469 IVSRTNFISSHTEKPVRIVGLSTALANARDLADWLNIH-QMGLFNFRPSVRPVPLEVHIQ 1527
Query: 706 GIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTA-RAIRDTALENDTLG 764
G + R MN ++ + + + VLIFV SR++T TA I A E D
Sbjct: 1528 GFPGQHYCPRMASMNKPTFQAIRSHSPAKPVLIFVSSRRQTRLTALELIAFLATEEDPK- 1586
Query: 765 RFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVL 824
++L D RE +++ ++ ++LK L +G +HHAG+ DR+ VE+LF + VQVL
Sbjct: 1587 QWLNMDE--RE-MENIIGTLRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVL 1643
Query: 825 VSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGII 884
++T+TLAWGVN PAH VIIKGT+ Y+ + + + D++QM+GRAGRPQ+D G+ +I
Sbjct: 1644 IATSTLAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVI 1703
Query: 885 ITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRM 944
+ + +Y + + P+ES + L+D LNAEI GT+ + ++A ++I +TY + R+
Sbjct: 1704 LVHDIKKDFYKKFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQDAMDYITWTYFFRRL 1763
Query: 945 LRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIAS 1004
+ NP+ Y L+ + D ++ + + LV + L+ + ++ + + GRIAS
Sbjct: 1764 IMNPSYYNLSD--VSHD-SVNKFLSSLVEKSLVELEHSYCIEIGEDNRSIEPLTYGRIAS 1820
Query: 1005 YYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDE---KMELAKLLDRVPI 1061
YYY+ H T+ + E LKP G EL + S +EE+ + VR +E ELAK L
Sbjct: 1821 YYYLKHQTVKMFKERLKPECGTEELLSILSDAEEYTDLPVRHNEDHMNSELAKCLPLESN 1880
Query: 1062 PVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQ 1121
P S + P K ++LLQA++S+ L +D + A R+ +A+ ++ +GW
Sbjct: 1881 P--HSFDSPHTKAHLLLQAHLSRTMLPCPDYDTDTKTVLDQALRVCQAMLDVAANQGWLV 1938
Query: 1122 LAEKALNLSKMVTKRMWSVQTPLRQFNGIPN 1152
A NL +MV + W + L IPN
Sbjct: 1939 TALNITNLVQMVIQGRWLKDSSLLS---IPN 1966
Score = 68 (29.0 bits), Expect = 6.0e-227, Sum P(3) = 6.0e-227
Identities = 25/102 (24%), Positives = 50/102 (49%)
Query: 293 EVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEE 352
++L + GD E++N+L L D LI+ LL+NR+ +V R + + + + +++
Sbjct: 253 DMLASVKSGD--ELQNELFELLGPDGLELIEKLLQNRITIV--DRFLNSSNDHKLQALQD 308
Query: 353 EMMGLGPDLAAILDQLHATRATAK-ERQKNLEKSIREEARRL 393
+ L + + T + E++K L K R E +R+
Sbjct: 309 NCKKI---LGENAKPNYGCQVTIQSEQEKQLMKQYRREEKRI 347
Score = 45 (20.9 bits), Expect = 6.0e-227, Sum P(3) = 6.0e-227
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 1225 WDDKVHGYVE-PFWVIVED--NDGEYI-LH--HEYFM 1255
WDD V G+ E + D ND +I LH EY +
Sbjct: 2046 WDDSVEGHGELSITTLTSDKRNDNRWIRLHADQEYVL 2082
>UNIPROTKB|F1NTD6 [details] [associations]
symbol:ascc3 "Activating signal cointegrator 1 complex
subunit 3" species:9031 "Gallus gallus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006307 "DNA dealkylation involved in
DNA repair" evidence=ISS] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0032508 "DNA duplex unwinding" evidence=ISS]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0006355 GO:GO:0006307 GO:GO:0008283
GO:GO:0006351 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 CTD:10973 KO:K01529 GO:GO:0043140
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
EMBL:AADN02002229 EMBL:AADN02002230 EMBL:AADN02002231
EMBL:AADN02002232 EMBL:AADN02002233 EMBL:AADN02002234
IPI:IPI00590520 RefSeq:XP_419816.1 UniGene:Gga.31679
ProteinModelPortal:F1NTD6 PRIDE:F1NTD6 GeneID:421790
KEGG:gga:421790 Uniprot:F1NTD6
Length = 2211
Score = 2145 (760.1 bits), Expect = 4.4e-226, Sum P(2) = 4.4e-226
Identities = 425/871 (48%), Positives = 590/871 (67%)
Query: 437 FMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQL 496
F+ K LPE QR NK YEE+ +P + P+ EK++ I ++ E Q AFKGM +L
Sbjct: 427 FIGGAKVFLPESVQRENNKMYEEVKIPHSEPMPIGIEEKIVYIKDLDEIGQLAFKGMKRL 486
Query: 497 NRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYV 556
NR+QS V+++A ++ +N+L+CAPTGAGKTN+A+LT+L ++ G +KIVYV
Sbjct: 487 NRIQSIVFETAYNTNENMLICAPTGAGKTNIAMLTVLHEIR-QHVQHGVIKKDEFKIVYV 545
Query: 557 APMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS- 615
APMKAL AE+ S RL+ + V+EL+GD L++ +I TQ++VTTPEKWD++TRKS
Sbjct: 546 APMKALAAEMTNYFSKRLEPLGITVKELTGDMQLSKGEILRTQMLVTTPEKWDVVTRKSV 605
Query: 616 GDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYED 675
GD +QLVK +RGPVLESIVART+RQ+E+T+ IR++GLSATLPNY D
Sbjct: 606 GDVALSQLVKLLILDEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLD 665
Query: 676 VALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA--VAGK 733
VA FL VN GLFYFD+ +RPVPL Q +IGI+ +Q+ M+++CYE V+ +AG
Sbjct: 666 VATFLHVNPYIGLFYFDSRFRPVPLGQTFIGIKTTNKVQQLNHMDEVCYENVLKQIMAG- 724
Query: 734 HQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793
HQV++FVH+R T +TA A+R+ A N + FL + ++ L++L
Sbjct: 725 HQVMVFVHARNATVRTAMALREKAKNNGHICHFLSPQGSDYGQAEKQVQRSRNKQLRELF 784
Query: 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEK 853
P GF+IHHAGM R DR LVE+LF +GH++VLV TATLAWGVNLPAH V+IKGTQIY ++
Sbjct: 785 PDGFSIHHAGMLRQDRSLVENLFSNGHIKVLVCTATLAWGVNLPAHAVVIKGTQIYAAKR 844
Query: 854 GAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLA 913
G++ +L LD+MQ+ GRAGRPQ+D +GEGIIIT H +L +YL+L+ QQ PIESQF+ LA
Sbjct: 845 GSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLTLLTQQNPIESQFLESLA 904
Query: 914 DQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVH 973
D LNAEI LGTV N +EA WI YTYLY+RM NP +YG++ + + D L + R LV
Sbjct: 905 DNLNAEIALGTVTNVEEAVKWISYTYLYVRMRANPLVYGISHKAYQMDPGLEKHREQLVI 964
Query: 974 TAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNE--HLKPTMGDIELCR 1031
LD+ +++++ ++G+F TDLGR AS+YYI + TI T+NE T GDI
Sbjct: 965 EVGRKLDKARMIRFEERTGFFSSTDLGRTASHYYIKYNTIETFNELFDAHKTEGDI--LA 1022
Query: 1032 LFSLSEEFKYVTVRQDEKMELAKLL-DRVPIPVKESLEEPSAKINVLLQAYISQLKLEGL 1090
+ S +EEF+ + VR++E EL LL D +P +E KIN+LLQ YIS+ +L+
Sbjct: 1023 IVSKAEEFEQIKVREEEIEELDTLLNDFCELPAPGGVENNYGKINILLQTYISRGELDSF 1082
Query: 1091 SLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGI 1150
SL SD ++ Q+A R++RALFEI L++ W + + LNLSK++ KR+W +PLRQF+ +
Sbjct: 1083 SLISDSAYVAQNAARIVRALFEIALRKRWPAMTYRLLNLSKVIDKRLWGWVSPLRQFSVL 1142
Query: 1151 PNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITR 1210
P +L KLE+K+ ++ D+ E+G ++ K+G + + VHQ P + + A +QPITR
Sbjct: 1143 PPSVLSKLEEKNLTVDKMKDMRKDEIGHMLHHVKIGLKVKQCVHQIPSIAMEATIQPITR 1202
Query: 1211 TVLKVELTITPDFLWDDKVHGYV-EPFWVIVEDNDGEYILHHEYFML-KKQYI-EEDHSL 1267
TVL+V L ITPDF W+D+VHG V EP+W+ VED ++I H EYF++ KKQ I +E L
Sbjct: 1203 TVLRVRLNITPDFTWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFIIQKKQVITKEPQLL 1262
Query: 1268 NFTVPIYEPLPPQYFIRVVSDKWLGV-LVCV 1297
FT+PI+EPLP QY+IR VSD+WLG VC+
Sbjct: 1263 VFTIPIFEPLPSQYYIRAVSDRWLGAEAVCI 1293
Score = 936 (334.5 bits), Expect = 2.0e-95, Sum P(2) = 2.0e-95
Identities = 229/675 (33%), Positives = 365/675 (54%)
Query: 472 PNEKLIKISEMPEWA--QPAFKGM---TQLNRVQSRVYKSALSSADNILLCAPTGAGKTN 526
P+ +L+ + +P A P ++ + T N +Q++++ + + N+LL APTG+GKT
Sbjct: 1307 PHTELLDLQPLPVTALGHPEYEVLYKFTHFNPIQTQIFHTLYHTDCNVLLGAPTGSGKTV 1366
Query: 527 VAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVRELS 585
A L I + N+ + K VY+AP+KALV E + + R++ KV EL+
Sbjct: 1367 AAELAIFR--VFNK-------YPTSKAVYIAPLKALVRERIEDWKVRIEEKLGKKVVELT 1417
Query: 586 GDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLES 645
GD T + I + +IVTTPEKWD ++R +R+Y Q V RGPVLE
Sbjct: 1418 GDVTPDMRAIAQADLIVTTPEKWDGVSRSWQNRSYVQKVSILIIDEIHLLGDERGPVLEV 1477
Query: 646 IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYI 705
IV+RT T++ +R+VGLS L N D+A +L +N + GLF F S RPVPL
Sbjct: 1478 IVSRTNFISSHTEKPVRVVGLSTALANARDLADWLNIN-QMGLFNFRPSVRPVPLEVHIQ 1536
Query: 706 GIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTAR-AIRDTALENDTLG 764
G + R MN ++ + + + VLIFV SR++T T+ I A E+D
Sbjct: 1537 GFPGQHYCPRMARMNKPAFQAIRSHSPAKPVLIFVSSRRQTRLTSLDLIAFLATEDDPK- 1595
Query: 765 RFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVL 824
++LK D RE + V+ ++LK L +G +HHAG+ DR+ VE+LF + +QVL
Sbjct: 1596 QWLKMDE--RE-MNDIIGTVRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKIQVL 1652
Query: 825 VSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGII 884
++T+TLAWGVN PAH VI+KGT+ Y+ + + + D++QM+GRAGRPQ+D G+ +I
Sbjct: 1653 IATSTLAWGVNFPAHLVIVKGTEYYDGKTRRYVDYPITDVLQMMGRAGRPQFDDQGKAVI 1712
Query: 885 ITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRM 944
+ + +Y + + P+ES + LAD LNAEI GT+ + ++A ++I +TY + R+
Sbjct: 1713 LVHDIKKDFYKKFLYEPFPVESSLLDVLADHLNAEIAAGTITSKQDAMDYITWTYFFRRL 1772
Query: 945 LRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIAS 1004
+ NP Y L + + D T+ + + LV + L+ + ++ + + GRIAS
Sbjct: 1773 IMNPTYYNL--DNVSHD-TMNKYLSSLVEKSLFDLECSYCIEIGEDNRTIEPLTYGRIAS 1829
Query: 1005 YYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVK 1064
YYY+ H TI + + LKP EL + + ++E+ + VR +E ++L +PI V
Sbjct: 1830 YYYLKHPTIGMFKDQLKPESSVEELLLILTNADEYTDLPVRHNEDQMNSELAKHLPIEVN 1889
Query: 1065 -ESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLA 1123
S + K ++LLQA+ S L +D + A R+ +A+ ++ GW A
Sbjct: 1890 PHSFDSSHTKTHLLLQAHFSHAILPCPDYATDTKTVLDQAIRICQAMLDVTAHHGWLVAA 1949
Query: 1124 EKALNLSKMVTKRMW 1138
NL +MV + W
Sbjct: 1950 LNITNLVQMVVQGRW 1964
Score = 60 (26.2 bits), Expect = 4.4e-226, Sum P(2) = 4.4e-226
Identities = 28/101 (27%), Positives = 49/101 (48%)
Query: 293 EVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEE 352
E+L GD E++N+L L + F LI+ LL+NR +V R Q+ + + ++E
Sbjct: 261 EMLASPKSGD--ELQNELFELLGPEGFELIEKLLQNRSVIV--ERSLTCQNDNKFQTLQE 316
Query: 353 EMMGLGPDLAAILDQLHATRATAK-ERQKNLEKSIREEARR 392
+ + A + + T + E++K L K R E +R
Sbjct: 317 QCKKFIGENAK---PNYGCQVTIQSEQEKLLMKQYRREEKR 354
Score = 45 (20.9 bits), Expect = 7.6e-94, Sum P(2) = 7.6e-94
Identities = 22/84 (26%), Positives = 32/84 (38%)
Query: 289 KLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERK 348
K+ EEV +E +E K++Y D+ + F RL + A + E
Sbjct: 445 KMYEEVKIPHSEPMPIGIEEKIVYIKDLDEIGQLAFKGMKRLNRIQSIVFETAYNTNENM 504
Query: 349 KIEEEMMGLGPDLAAILDQLHATR 372
I G G A+L LH R
Sbjct: 505 LICAPT-GAGKTNIAMLTVLHEIR 527
>UNIPROTKB|E2QVY0 [details] [associations]
symbol:ASCC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IEA] [GO:0006307 "DNA dealkylation involved in DNA repair"
evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005794
GO:GO:0006307 GO:GO:0008283 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 Ensembl:ENSCAFT00000005717
Uniprot:E2QVY0
Length = 1925
Score = 2117 (750.3 bits), Expect = 5.7e-224, Sum P(2) = 5.7e-224
Identities = 414/868 (47%), Positives = 585/868 (67%)
Query: 437 FMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQL 496
F+A K LPEG QR NK YEE+ +P + P+ EK + I ++ E Q AFKGM +L
Sbjct: 418 FIAGAKMILPEGIQRENNKMYEEVKIPYSEPMPIGFEEKPVYIQDLDEIGQLAFKGMRRL 477
Query: 497 NRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYV 556
NR+QS V+++A ++ +N+L+CAPTGAGKTN+A+LT+L ++ G + +KIVYV
Sbjct: 478 NRIQSIVFETAYNTNENMLICAPTGAGKTNIAMLTVLHEIR-QHFQQGVIKKNEFKIVYV 536
Query: 557 APMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS- 615
APMKAL AE+ S RL+ + V+EL+GD L++ +I TQ++VTTPEKWD++TRKS
Sbjct: 537 APMKALAAEMTNYFSKRLEPLGIVVKELTGDMQLSKNEILRTQMLVTTPEKWDVVTRKSV 596
Query: 616 GDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYED 675
GD +Q+VK +RGPVLESIVART+RQ+E+T+ IR++GLSATLPNY D
Sbjct: 597 GDVALSQIVKLLILDEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLD 656
Query: 676 VALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKH 734
VA FL VN GLFYFD +RPVPL Q ++G++ +Q+ M+++CYE V+ V H
Sbjct: 657 VATFLHVNPCIGLFYFDGRFRPVPLGQTFLGVKSANKVQQLNNMDEVCYESVLKQVKAGH 716
Query: 735 QVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLP 794
QV++FVH+R T +TA ++ + A + + FL + ++ +++L P
Sbjct: 717 QVMVFVHARNATVRTAMSLIERAKNSGQISCFLPSQGSEYGHAEKQVQKSRNKQVRELFP 776
Query: 795 YGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKG 854
GF+IHHAGM R DR LVE+LF +GH++VLV TATLAWGVNLPAH VIIKGTQIY ++G
Sbjct: 777 DGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRG 836
Query: 855 AWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLAD 914
++ +L LD+MQ+ GRAGRPQ+D +GEGIIIT H +L +YL+L+ QQ PIESQF+ LAD
Sbjct: 837 SFVDLGILDVMQIFGRAGRPQFDRFGEGIIITTHDKLSHYLTLLTQQNPIESQFLESLAD 896
Query: 915 QLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHT 974
LNAEI LGTV N +EA WI YTYLY+RM NP +YG++ + + D TL + R LV
Sbjct: 897 NLNAEIALGTVTNVEEAVKWISYTYLYVRMRANPLVYGISHKAYQVDPTLAKHREQLVIE 956
Query: 975 AATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFS 1034
LD+ +++++ ++GYF TDLGR AS+YYI + TI T+NE + ++ + S
Sbjct: 957 VGRKLDKARMIRFEERTGYFSSTDLGRTASHYYIKYNTIETFNEFFDAHKTESDIFAIVS 1016
Query: 1035 LSEEFKYVTVRQDEKMELAKLLDRV-PIPVKESLEEPSAKINVLLQAYISQLKLEGLSLT 1093
+EEF + VR++E EL LL+ + +E KIN+LLQ YIS+ +++ SL
Sbjct: 1017 KAEEFDQIKVREEEIEELDALLNNFCELAAPGGVENSYGKINILLQTYISRGEMDSFSLI 1076
Query: 1094 SDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNE 1153
SD ++ Q+A R++RALFEI L++ W + + LNLSK++ KR+W +PLRQF+ +P
Sbjct: 1077 SDSAYVAQNAARIVRALFEIALRKRWPAMTYRLLNLSKVIDKRLWGWASPLRQFSVLPPH 1136
Query: 1154 ILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVL 1213
IL +LE+K+ ++ D+ E+G ++ +G + + VHQ P + + A +QPITRTVL
Sbjct: 1137 ILTRLEEKNLTVDKLKDMRKDEIGHMLHHVNIGLKVKQCVHQIPSVTMEASIQPITRTVL 1196
Query: 1214 KVELTITPDFLWDDKVHGYV-EPFWVIVEDNDGEYILHHEYFM-LKKQYI-EEDHSLNFT 1270
+V L+I PDF W+D+VHG V EP+W+ VED ++I H EYF+ LKKQ I +E L FT
Sbjct: 1197 RVTLSICPDFTWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFLVLKKQVISKEAQLLVFT 1256
Query: 1271 VPIYEPLPPQYFIRVVSDKWLGV-LVCV 1297
+PI+EPLP QY+IR VSD+WLG VC+
Sbjct: 1257 IPIFEPLPSQYYIRAVSDRWLGAEAVCI 1284
Score = 884 (316.2 bits), Expect = 5.2e-91, Sum P(2) = 5.2e-91
Identities = 223/645 (34%), Positives = 353/645 (54%)
Query: 472 PNEKLIKISEMPEWAQ--PAFKGM---TQLNRVQSRVYKSALSSADNILLCAPTGAGKTN 526
P+ +L+ + +P A A++ + + N VQ++++ + + N+LL APTG+GKT
Sbjct: 1298 PHTELLDLQPLPITALGCEAYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTV 1357
Query: 527 VAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVRELS 585
A L I + N+ + K VY+AP+KALV E + + R++ KV EL+
Sbjct: 1358 AAELAIFR--VFNK-------YPTSKAVYIAPLKALVRERMDDWKVRIEEKLGKKVIELT 1408
Query: 586 GDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLES 645
GD T + I + +IVTTPEKWD ++R +R Y + V RGPVLE
Sbjct: 1409 GDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRNYVKQVTILIIDEIHLLGEERGPVLEV 1468
Query: 646 IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYI 705
IV+RT T++ +R+VGLS L N D+A +L ++ + GLF F S RPVPL
Sbjct: 1469 IVSRTNFISSHTEKPVRIVGLSTALANARDLADWLNIH-QMGLFNFRPSVRPVPLEVHIQ 1527
Query: 706 GIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTA-RAIRDTALENDTLG 764
G + R MN ++ + + + VLIFV SR++T TA I A E D
Sbjct: 1528 GFPGQHYCPRMASMNKPTFQAIRSHSPAKPVLIFVSSRRQTRLTALELIAFLATEEDPK- 1586
Query: 765 RFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVL 824
++L D RE +++ ++ ++LK L +G +HHAG+ DR+ VE+LF + VQVL
Sbjct: 1587 QWLNMDE--RE-MENIIGTLRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVL 1643
Query: 825 VSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGII 884
++T+TLAWGVN PAH VIIKGT+ Y+ + + + D++QM+GRAGRPQ+D G+ +I
Sbjct: 1644 IATSTLAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVI 1703
Query: 885 ITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRM 944
+ + +Y + + P+ES + L+D LNAEI GT+ + ++A ++I +TY + R+
Sbjct: 1704 LVHDIKKDFYKKFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQDAMDYITWTYFFRRL 1763
Query: 945 LRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIAS 1004
+ NP+ Y L+ + D ++ + + LV + L+ + ++ + + GRIAS
Sbjct: 1764 IMNPSYYNLSD--VSHD-SVNKFLSSLVEKSLVELEHSYCIEIGEDNRSIEPLTYGRIAS 1820
Query: 1005 YYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDE---KMELAKLLDRVPI 1061
YYY+ H T+ + E LKP G EL + S +EE+ + VR +E ELAK L
Sbjct: 1821 YYYLKHQTVKMFKERLKPECGTEELLSILSDAEEYTDLPVRHNEDHMNSELAKCLPLESN 1880
Query: 1062 PVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRL 1106
P S + P K ++LLQA++S+ L +D + A R+
Sbjct: 1881 P--HSFDSPHTKAHLLLQAHLSRTMLPCPDYDTDTKTVLDQALRV 1923
Score = 68 (29.0 bits), Expect = 5.7e-224, Sum P(2) = 5.7e-224
Identities = 25/102 (24%), Positives = 50/102 (49%)
Query: 293 EVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEE 352
++L + GD E++N+L L D LI+ LL+NR+ +V R + + + + +++
Sbjct: 253 DMLASVKSGD--ELQNELFELLGPDGLELIEKLLQNRITIV--DRFLNSSNDHKLQALQD 308
Query: 353 EMMGLGPDLAAILDQLHATRATAK-ERQKNLEKSIREEARRL 393
+ L + + T + E++K L K R E +R+
Sbjct: 309 NCKKI---LGENAKPNYGCQVTIQSEQEKQLMKQYRREEKRI 347
>UNIPROTKB|E1BNG3 [details] [associations]
symbol:ascc3 "Activating signal cointegrator 1 complex
subunit 3" species:9913 "Bos taurus" [GO:0043140 "ATP-dependent
3'-5' DNA helicase activity" evidence=ISS] [GO:0032508 "DNA duplex
unwinding" evidence=ISS] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0006307 "DNA dealkylation involved in DNA repair"
evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0006355 GO:GO:0006307 GO:GO:0008283
GO:GO:0006351 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:DAAA02026160 EMBL:DAAA02026161
EMBL:DAAA02026162 EMBL:DAAA02026163 EMBL:DAAA02026164
EMBL:DAAA02026165 EMBL:DAAA02026166 EMBL:DAAA02026167
EMBL:DAAA02026168 EMBL:DAAA02026169 EMBL:DAAA02026170
EMBL:DAAA02026171 EMBL:DAAA02026172 EMBL:DAAA02026173
EMBL:DAAA02026174 EMBL:DAAA02026175 EMBL:DAAA02026176
EMBL:DAAA02026177 EMBL:DAAA02026178 EMBL:DAAA02026179
EMBL:DAAA02026180 EMBL:DAAA02026181 EMBL:DAAA02026182
EMBL:DAAA02026183 EMBL:DAAA02026184 EMBL:DAAA02026185
EMBL:DAAA02026186 EMBL:DAAA02026187 EMBL:DAAA02026188
EMBL:DAAA02026189 EMBL:DAAA02026190 EMBL:DAAA02026191
EMBL:DAAA02026192 EMBL:DAAA02026193 EMBL:DAAA02026194
EMBL:DAAA02026195 EMBL:DAAA02026196 EMBL:DAAA02026197
EMBL:DAAA02026198 EMBL:DAAA02026199 IPI:IPI00689177
RefSeq:NP_001193047.1 UniGene:Bt.26262 PRIDE:E1BNG3
Ensembl:ENSBTAT00000027294 GeneID:538416 KEGG:bta:538416 CTD:10973
GeneTree:ENSGT00700000104562 KO:K01529 OMA:FPGKHYC NextBio:20877349
GO:GO:0043140 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 Uniprot:E1BNG3
Length = 2201
Score = 2114 (749.2 bits), Expect = 5.1e-223, Sum P(2) = 5.1e-223
Identities = 416/868 (47%), Positives = 584/868 (67%)
Query: 437 FMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQL 496
F+A K LPEG QR NK YEE+ +P + P+ EK + I ++ E Q AFKGM +L
Sbjct: 418 FIAGAKMILPEGIQRENNKIYEEVKIPYTEPMPIGFEEKPVYIQDLDEIGQLAFKGMRRL 477
Query: 497 NRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYV 556
NR+QS V+++A ++ +N+L+CAPTGAGKTN+A+LT+L ++ G + +KIVYV
Sbjct: 478 NRIQSIVFETAYNTNENMLICAPTGAGKTNIAMLTVLHEIR-QHFQQGVIKKNEFKIVYV 536
Query: 557 APMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS- 615
APMKAL AE+ S RL+ + V+EL+GD L++ +I TQ++VTTPEKWD++TRKS
Sbjct: 537 APMKALAAEMTNYFSKRLEPLGIVVKELTGDMQLSKNEILRTQMLVTTPEKWDVVTRKSV 596
Query: 616 GDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYED 675
GD +Q+VK +RGPVLESIVART+RQ+E+T+ IR++GLSATLPNY D
Sbjct: 597 GDVALSQIVKLLILDEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLD 656
Query: 676 VALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKH 734
VA FL VN GLF+FD +RPVPL Q ++GI+ +Q+ M+++CYE V+ V H
Sbjct: 657 VATFLHVNPCIGLFFFDGRFRPVPLGQTFLGIKSANKVQQLNNMDEVCYESVLKQVKAGH 716
Query: 735 QVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLP 794
QV++FVH+R T +TA ++ + A N + FL + ++ +++L P
Sbjct: 717 QVMVFVHARNATVRTAMSLIERAKNNGQICYFLPTQGPEYGHAEKQVQKSRNRQVRELFP 776
Query: 795 YGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKG 854
GF+IHHAGM R DR LVE LF +GH++VLV TATLAWGVNLPAH VIIKGTQIY ++G
Sbjct: 777 DGFSIHHAGMLRQDRNLVESLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRG 836
Query: 855 AWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLAD 914
++ +L LD+MQ+ GRAGRPQ+D +GEGIIIT H +L +YLSL+ QQ PIESQF+ LAD
Sbjct: 837 SFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLSLLTQQNPIESQFLESLAD 896
Query: 915 QLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHT 974
LNAEI LGTV N +EA WI YTYLY+RM NP +YG++ + + D TL + R LV
Sbjct: 897 NLNAEIALGTVTNVEEAVKWISYTYLYVRMRANPLVYGISHKAYQIDPTLAKHREQLVIE 956
Query: 975 AATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFS 1034
LD+ +++++ ++GYF TDLGR AS+YYI + TI T+NE + ++ + S
Sbjct: 957 VGRKLDKARMIRFEERTGYFSSTDLGRTASHYYIKYNTIETFNELFDAHKTESDIFAIVS 1016
Query: 1035 LSEEFKYVTVRQDEKMELAKLLDRV-PIPVKESLEEPSAKINVLLQAYISQLKLEGLSLT 1093
+EEF + VR++E EL LL + +E KIN+LLQ YIS+ +++ SL
Sbjct: 1017 KAEEFDQIKVREEEIEELDTLLSNFCELSAPGGVENSYGKINILLQTYISRGEVDSFSLI 1076
Query: 1094 SDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNE 1153
SD ++ Q+A R++RALFEI L++ W + + LNLSK++ KR+W +PLRQF+ +P
Sbjct: 1077 SDSAYVAQNAARIVRALFEIALRKRWPAMTYRLLNLSKVIDKRLWGWTSPLRQFSVLPPH 1136
Query: 1154 ILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVL 1213
IL +LE+K+ ++ D+ E+G ++ +G + + VHQ P + + A +QPITRTVL
Sbjct: 1137 ILTRLEEKNLTVDKLKDMRKDEIGHILHHVNIGLKVKQCVHQIPSVTMEASIQPITRTVL 1196
Query: 1214 KVELTITPDFLWDDKVHGYV-EPFWVIVEDNDGEYILHHEYFM-LKKQYI-EEDHSLNFT 1270
+V L+I+PDF W+D+VHG V EP+W+ VED ++I H EYF+ LKKQ I +E L FT
Sbjct: 1197 RVTLSISPDFSWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFLVLKKQVISKEAQLLVFT 1256
Query: 1271 VPIYEPLPPQYFIRVVSDKWLGV-LVCV 1297
+PI+EPLP QY+IR VSD+WLG VC+
Sbjct: 1257 IPIFEPLPSQYYIRAVSDRWLGAEAVCI 1284
Score = 930 (332.4 bits), Expect = 5.2e-95, Sum P(2) = 5.2e-95
Identities = 256/806 (31%), Positives = 414/806 (51%)
Query: 472 PNEKLIKISEMPEWAQ--PAFKGM---TQLNRVQSRVYKSALSSADNILLCAPTGAGKTN 526
P+ +L+ + +P A A++ + + N VQ++++ + + N+LL APTG+GKT
Sbjct: 1298 PHTELLDLQPLPVTALGCEAYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTV 1357
Query: 527 VAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVRELS 585
A L I + N+ + K VY+AP+KALV E + + R++ KV EL+
Sbjct: 1358 AAELAIFR--VFNK-------YPTSKAVYIAPLKALVRERMDDWKVRIEEKLGKKVIELT 1408
Query: 586 GDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLES 645
GD T + I + +IVTTPEKWD ++R +R Y + V RGPVLE
Sbjct: 1409 GDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRNYVKQVTILIIDEIHLLGEERGPVLEV 1468
Query: 646 IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYI 705
IV+RT T++ +R+VGLS L N D+A +L + + GLF F S RPVPL
Sbjct: 1469 IVSRTNFISSHTEKPVRIVGLSTALANARDLADWLNIR-QMGLFNFRPSVRPVPLEVHIQ 1527
Query: 706 GIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTA-RAIRDTALENDTLG 764
G + R MN ++ + + + VLIFV SR++T TA I A E D
Sbjct: 1528 GFPGQHYCPRMASMNKPTFQAIRSHSPAKPVLIFVSSRRQTRLTALELIAFLATEEDPK- 1586
Query: 765 RFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVL 824
++L D RE +++ ++ ++LK L +G +HHAG+ DR+ VE+LF + +QVL
Sbjct: 1587 QWLNMDE--RE-MENIIGTIRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKIQVL 1643
Query: 825 VSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGII 884
++T+TLAWGVN PAH VIIKGT+ Y+ + + + D++QM+GRAGRPQ+D G+ +I
Sbjct: 1644 IATSTLAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVI 1703
Query: 885 ITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRM 944
+ + +Y + + P+ES + L+D LNAEI GT+ + ++A ++I +TY + R+
Sbjct: 1704 LVHDIKKDFYKKFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQDAMDYITWTYFFRRL 1763
Query: 945 LRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIAS 1004
+ NP+ Y L+ + D ++ + ++LV + L+ + ++ + + GRIAS
Sbjct: 1764 IMNPSYYNLSD--VSHD-SVNKFLSNLVEKSLVELEHSYCIEIGEDNRSIEPLTYGRIAS 1820
Query: 1005 YYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDE---KMELAKLLDRVPI 1061
YYY+ H T+ + E LKP G EL + S +EE+ + VR +E ELAK L
Sbjct: 1821 YYYLKHQTVKMFKERLKPECGTEELLSILSDAEEYTDLPVRHNEDHMNSELAKCLPLESN 1880
Query: 1062 PVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQ 1121
P S + P K ++LLQA++S+ L +D + A R+ +A+ ++ +GW
Sbjct: 1881 P--HSFDSPHTKAHLLLQAHLSRTMLPCPDYDTDTKTVLDQALRVCQAMLDVAAHQGWLV 1938
Query: 1122 LAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWE---RYYDLSPQELGE 1178
+L +MV + W + L I N L K + Y S + L E
Sbjct: 1939 TVLNITSLVQMVIQGRWLKDSSLLTIPHIENHHLHIFRKWSPGMKGPHAGYHGSIECLPE 1998
Query: 1179 LIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLK---VELTITPDFLWDDKVHGYVE- 1234
LI G+ H F K + A ++ + +++ ++ WDD G+ E
Sbjct: 1999 LIH-ACAGKD-HVFSSMIEKELPAPKMKQAWNFLSHLPVIDVGLSVKGWWDDAAEGHDEI 2056
Query: 1235 PFWVIVED--NDGEYI-LH--HEYFM 1255
+ D +D ++ LH EY +
Sbjct: 2057 SITTVASDKHSDNRWVRLHADQEYVL 2082
Score = 62 (26.9 bits), Expect = 5.1e-223, Sum P(2) = 5.1e-223
Identities = 24/102 (23%), Positives = 50/102 (49%)
Query: 293 EVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEE 352
++L + GD E++++L L D LI+ LL+NR+ +V R + + + + +++
Sbjct: 253 DMLASVKSGD--ELQDELFELLGPDGLELIEKLLQNRVTIV--DRFLNSSNDHKLQALQD 308
Query: 353 EMMGLGPDLAAILDQLHATRATAK-ERQKNLEKSIREEARRL 393
+ L + + T + E++K L K R E +R+
Sbjct: 309 NCKKI---LGENAKPNYGCQVTIQSEQEKQLMKQYRREEKRI 347
Score = 40 (19.1 bits), Expect = 1.1e-220, Sum P(2) = 1.1e-220
Identities = 12/51 (23%), Positives = 29/51 (56%)
Query: 344 QEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLE-KSIREEARRL 393
Q +R K+ E+++GL I+ L+ ++ ++ N + K+I + A+++
Sbjct: 30 QMKRSKLHEQIVGLDLTWMKIVKFLNEKLEKSEMQRVNEDLKAILQAAKQI 80
>UNIPROTKB|Q8N3C0 [details] [associations]
symbol:ASCC3 "Activating signal cointegrator 1 complex
subunit 3" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006307 "DNA dealkylation
involved in DNA repair" evidence=IDA] [GO:0032508 "DNA duplex
unwinding" evidence=IDA] [GO:0008283 "cell proliferation"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005622 "intracellular" evidence=IDA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0006307
GO:GO:0008283 EMBL:CH471051 GO:GO:0006351 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 CTD:10973
KO:K01529 OMA:FPGKHYC GO:GO:0043140 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 EMBL:AL834463 EMBL:AK315197
EMBL:AL591585 EMBL:AL121965 EMBL:AL133338 EMBL:AL356122 EMBL:Z86062
EMBL:BC050681 EMBL:BC125211 EMBL:BC125212 EMBL:BC026066
EMBL:AY013288 EMBL:AJ223948 IPI:IPI00430472 RefSeq:NP_006819.2
RefSeq:NP_071374.1 UniGene:Hs.486031 ProteinModelPortal:Q8N3C0
SMR:Q8N3C0 IntAct:Q8N3C0 MINT:MINT-1183138 STRING:Q8N3C0
PhosphoSite:Q8N3C0 DMDM:158518649 PaxDb:Q8N3C0 PRIDE:Q8N3C0
DNASU:10973 Ensembl:ENST00000369143 Ensembl:ENST00000369162
Ensembl:ENST00000522650 GeneID:10973 KEGG:hsa:10973 UCSC:uc003pqk.3
GeneCards:GC06M100956 H-InvDB:HIX0021958 HGNC:HGNC:18697
HPA:HPA031608 HPA:HPA031609 HPA:HPA031610 MIM:614217
neXtProt:NX_Q8N3C0 PharmGKB:PA134890913 eggNOG:COG1204
HOGENOM:HOG000152625 HOVERGEN:HBG051896 InParanoid:Q8N3C0
PhylomeDB:Q8N3C0 ChiTaRS:ASCC3 GenomeRNAi:10973 NextBio:41694
ArrayExpress:Q8N3C0 Bgee:Q8N3C0 CleanEx:HS_ASCC3
Genevestigator:Q8N3C0 GermOnline:ENSG00000112249 Uniprot:Q8N3C0
Length = 2202
Score = 2086 (739.4 bits), Expect = 5.5e-222, Sum P(3) = 5.5e-222
Identities = 415/870 (47%), Positives = 582/870 (66%)
Query: 437 FMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQL 496
F+A K LPEG QR NK YEE+ +P + PL EK + I ++ E Q AFKGM +L
Sbjct: 418 FIAGAKMILPEGIQRENNKLYEEVRIPYSEPMPLSFEEKPVYIQDLDEIGQLAFKGMKRL 477
Query: 497 NRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYV 556
NR+QS V+++A ++ +N+L+CAPTGAGKTN+A+LT+L ++ G + +KIVYV
Sbjct: 478 NRIQSIVFETAYNTNENMLICAPTGAGKTNIAMLTVLHEIR-QHFQQGVIKKNEFKIVYV 536
Query: 557 APMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS- 615
APMKAL AE+ S RL+ + V+EL+GD L++ +I TQ++VTTPEKWD++TRKS
Sbjct: 537 APMKALAAEMTDYFSRRLEPLGIIVKELTGDMQLSKSEILRTQMLVTTPEKWDVVTRKSV 596
Query: 616 GDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYED 675
GD +Q+V+ +RGPVLESIVART+RQ+E+T+ IR++GLSATLPNY D
Sbjct: 597 GDVALSQIVRLLILDEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLD 656
Query: 676 VALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKH 734
VA FL VN GLF+FD +RPVPL Q ++GI+ +Q+ M+++CYE V+ V H
Sbjct: 657 VATFLHVNPYIGLFFFDGRFRPVPLGQTFLGIKCANKMQQLNNMDEVCYENVLKQVKAGH 716
Query: 735 QVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLP 794
QV++FVH+R T +TA ++ + A + F + + ++ +++L P
Sbjct: 717 QVMVFVHARNATVRTAMSLIERAKNCGHIPFFFPTQGHDYVLAEKQVQRSRNKQVRELFP 776
Query: 795 YGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKG 854
GF+IHHAGM R DR LVE+LF +GH++VLV TATLAWGVNLPAH VIIKGTQIY ++G
Sbjct: 777 DGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRG 836
Query: 855 AWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLAD 914
++ +L LD+MQ+ GRAGRPQ+D +GEGIIIT H +L +YL+L+ Q+ PIESQF+ LAD
Sbjct: 837 SFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLTLLTQRNPIESQFLESLAD 896
Query: 915 QLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHT 974
LNAEI LGTV N +EA WI YTYLY+RM NP YG++ + + D TL + R LV
Sbjct: 897 NLNAEIALGTVTNVEEAVKWISYTYLYVRMRANPLAYGISHKAYQIDPTLRKHREQLVIE 956
Query: 975 AATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNE--HLKPTMGDIELCRL 1032
LD+ +++++ ++GYF TDLGR AS+YYI + TI T+NE T GDI +
Sbjct: 957 VGRKLDKAQMIRFEERTGYFSSTDLGRTASHYYIKYNTIETFNELFDAHKTEGDI--FAI 1014
Query: 1033 FSLSEEFKYVTVRQDEKMELAKLLDRV-PIPVKESLEEPSAKINVLLQAYISQLKLEGLS 1091
S +EEF + VR++E EL LL + +E KIN+LLQ YIS+ +++ S
Sbjct: 1015 VSKAEEFDQIKVREEEIEELDTLLSNFCELSTPGGVENSYGKINILLQTYISRGEMDSFS 1074
Query: 1092 LTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIP 1151
L SD ++ Q+A R++RALFEI L++ W + + LNLSK++ KR+W +PLRQF+ +P
Sbjct: 1075 LISDSAYVAQNAARIVRALFEIALRKRWPTMTYRLLNLSKVIDKRLWGWASPLRQFSILP 1134
Query: 1152 NEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRT 1211
IL +LE+K ++ D+ E+G ++ +G + + VHQ P +++ A +QPITRT
Sbjct: 1135 PHILTRLEEKKLTVDKLKDMRKDEIGHILHHVNIGLKVKQCVHQIPSVMMEASIQPITRT 1194
Query: 1212 VLKVELTITPDFLWDDKVHGYV-EPFWVIVEDNDGEYILHHEYFM-LKKQYI-EEDHSLN 1268
VL+V L+I DF W+D+VHG V EP+W+ VED ++I H EYF+ LKKQ I +E L
Sbjct: 1195 VLRVTLSIYADFTWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFLALKKQVISKEAQLLV 1254
Query: 1269 FTVPIYEPLPPQYFIRVVSDKWLGV-LVCV 1297
FT+PI+EPLP QY+IR VSD+WLG VC+
Sbjct: 1255 FTIPIFEPLPSQYYIRAVSDRWLGAEAVCI 1284
Score = 928 (331.7 bits), Expect = 1.3e-95, Sum P(3) = 1.3e-95
Identities = 257/804 (31%), Positives = 411/804 (51%)
Query: 472 PNEKLIKISEMPEWAQ--PAFKGM---TQLNRVQSRVYKSALSSADNILLCAPTGAGKTN 526
P+ +L+ + +P A A++ + + N VQ++++ + + N+LL APTG+GKT
Sbjct: 1298 PHTELLDLQPLPITALGCKAYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTV 1357
Query: 527 VAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVRELS 585
A L I + N+ + K VY+AP+KALV E + + R++ KV EL+
Sbjct: 1358 AAELAIFR--VFNK-------YPTSKAVYIAPLKALVRERMDDWKVRIEEKLGKKVIELT 1408
Query: 586 GDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLES 645
GD T + I + +IVTTPEKWD ++R +R Y Q V RGPVLE
Sbjct: 1409 GDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRNYVQQVTILIIDEIHLLGEERGPVLEV 1468
Query: 646 IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYI 705
IV+RT T++ +R+VGLS L N D+A +L + + GLF F S RPVPL
Sbjct: 1469 IVSRTNFISSHTEKPVRIVGLSTALANARDLADWLNIK-QMGLFNFRPSVRPVPLEVHIQ 1527
Query: 706 GIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTA-RAIRDTALENDTLG 764
G + R MN ++ + + + VLIFV SR++T TA I A E D
Sbjct: 1528 GFPGQHYCPRMASMNKPAFQAIRSHSPAKPVLIFVSSRRQTRLTALELIAFLATEEDPK- 1586
Query: 765 RFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVL 824
++L D RE +++ V+ ++LK L +G +HHAG+ DR+ VE+LF + VQVL
Sbjct: 1587 QWLNMDE--RE-MENIIATVRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVL 1643
Query: 825 VSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGII 884
++T+TLAWGVN PAH VIIKGT+ Y+ + + + D++QM+GRAGRPQ+D G+ +I
Sbjct: 1644 IATSTLAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVI 1703
Query: 885 ITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRM 944
+ + +Y + + P+ES + L+D LNAEI GT+ + ++A ++I +TY + R+
Sbjct: 1704 LVHDIKKDFYKKFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQDALDYITWTYFFRRL 1763
Query: 945 LRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIAS 1004
+ NP+ Y L + D ++ + + L+ + L+ + ++ + + GRIAS
Sbjct: 1764 IMNPSYYNLGD--VSHD-SVNKFLSHLIEKSLIELELSYCIEIGEDNRSIEPLTYGRIAS 1820
Query: 1005 YYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVK 1064
YYY+ H T+ + + LKP EL + S +EE+ + VR +E ++L +PI
Sbjct: 1821 YYYLKHQTVKMFKDRLKPECSTEELLSILSDAEEYTDLPVRHNEDHMNSELAKCLPIESN 1880
Query: 1065 -ESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLA 1123
S + P K ++LLQA++S+ L +D + A R+ +A+ ++ +GW
Sbjct: 1881 PHSFDSPHTKAHLLLQAHLSRAMLPCPDYDTDTKTVLDQALRVCQAMLDVAANQGWLVTV 1940
Query: 1124 EKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEK-KDFAWERYYD--LSPQELGELI 1180
NL +MV + W + L I N L +K K + S + L ELI
Sbjct: 1941 LNITNLIQMVIQGRWLKDSSLLTLPNIENHHLHLFKKWKPIMKGPHARGRTSIESLPELI 2000
Query: 1181 RFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLK---VELTITPDFLWDDKVHGYVE-PF 1236
G H F + AA + + + + I+ WDD V G+ E
Sbjct: 2001 H--ACGGKDHVFSSMVESELHAAKTKQAWNFLSHLPVINVGISVKGSWDDLVEGHNELSV 2058
Query: 1237 WVIVED--NDGEYI-LH--HEYFM 1255
+ D +D ++I LH EY +
Sbjct: 2059 STLTADKRDDNKWIKLHADQEYVL 2082
Score = 58 (25.5 bits), Expect = 5.5e-222, Sum P(3) = 5.5e-222
Identities = 23/102 (22%), Positives = 49/102 (48%)
Query: 293 EVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEE 352
++L + GD E++++L L + LI+ LL+NR+ +V R + + + +++
Sbjct: 253 DMLASIKSGD--ELQDELFELLGPEGLELIEKLLQNRITIV--DRFLNSSNDHRFQALQD 308
Query: 353 EMMGLGPDLAAILDQLHATRATAK-ERQKNLEKSIREEARRL 393
+ L + + T + E++K L K R E +R+
Sbjct: 309 NCKKI---LGENAKPNYGCQVTIQSEQEKQLMKQYRREEKRI 347
Score = 47 (21.6 bits), Expect = 8.0e-221, Sum P(3) = 8.0e-221
Identities = 12/51 (23%), Positives = 25/51 (49%)
Query: 450 QRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQ 500
++F N+ +E P +K P++ E+ ++ K MT++ RV+
Sbjct: 197 KKFLNEHLQEACTPELK--PVEKTNGSFLWCEVEKYLNSTLKEMTEVPRVE 245
Score = 39 (18.8 bits), Expect = 5.5e-222, Sum P(3) = 5.5e-222
Identities = 9/37 (24%), Positives = 21/37 (56%)
Query: 262 VQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKIL 298
V D+ W +KI + +++++ + Q + E++ IL
Sbjct: 40 VLDLGLTW--KKIIKFLNEKLEKSKMQSINEDLKDIL 74
>RGD|1307995 [details] [associations]
symbol:Ascc3 "activating signal cointegrator 1 complex subunit
3" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006307 "DNA dealkylation involved in DNA repair"
evidence=ISS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0032508 "DNA duplex unwinding" evidence=ISS]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 RGD:1307995 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0006355 GO:GO:0006307 GO:GO:0008283
GO:GO:0006351 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 IPI:IPI01016410 UniGene:Rn.24209
Ensembl:ENSRNOT00000057016 UCSC:RGD:1307995
GeneTree:ENSGT00640000091272 ArrayExpress:F1LPQ2 Uniprot:F1LPQ2
Length = 2197
Score = 2090 (740.8 bits), Expect = 7.0e-222, Sum P(3) = 7.0e-222
Identities = 417/877 (47%), Positives = 585/877 (66%)
Query: 430 AFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPA 489
A ++ F+A K LPEG QR K YEE+ +P + P+ EK + I ++ E Q A
Sbjct: 412 AARETSAFIAGAKMILPEGIQRENTKLYEEVRIPYSEPMPVGFEEKPVYIQDLDEVGQLA 471
Query: 490 FKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHS 549
FKGM +LNR+QS V+ +A ++ +N+L+CAPTGAGKTN+A+LT+L ++ + + G +
Sbjct: 472 FKGMKRLNRIQSIVFDTAYNTNENMLICAPTGAGKTNIAMLTVLHEIRQHFHQ-GVLKKN 530
Query: 550 NYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWD 609
+KIVYVAPMKAL AE+ S RL+ + V+EL+GD L++ +I TQ++VTTPEKWD
Sbjct: 531 EFKIVYVAPMKALAAEMTNYFSKRLEPLGIVVKELTGDMQLSKSEILRTQMLVTTPEKWD 590
Query: 610 IITRKS-GDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSA 668
++TRKS GD +Q+VK +RGPVLESIVART+RQ+E+T+ IR++GLSA
Sbjct: 591 VVTRKSVGDVALSQIVKLLILDEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSA 650
Query: 669 TLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVV 728
TLPNY DVA FL VN GLFYFD +RPVPL Q ++GI+ +Q+ M+++CYE V+
Sbjct: 651 TLPNYLDVATFLHVNPYIGLFYFDGRFRPVPLGQTFLGIKSANKMQQLNNMDEVCYESVL 710
Query: 729 A-VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSN 787
V HQV++FVH+R T +TA ++ + A + + FL ++
Sbjct: 711 KQVKAGHQVMVFVHARNATVRTAMSLIERAKNSGQISCFLPTQGPEYGHALKQVQKSRNK 770
Query: 788 DLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQ 847
+++L GF+IHHAGM R DR LVE+LF +GH++VLV TATLAWGVNLPAH VIIKGTQ
Sbjct: 771 QVRELFSDGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQ 830
Query: 848 IYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQ 907
IY ++G++ +L LD+MQ+ GRAGRPQ+D +GEGIIIT H +L +YLSL+ QQ PIESQ
Sbjct: 831 IYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLSLLTQQNPIESQ 890
Query: 908 FVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGER 967
F+ LAD LNAEI LGTV N +EA W+ YTYLY+RM NP YG++ + + D TL +
Sbjct: 891 FLESLADNLNAEIALGTVTNVEEAVKWMSYTYLYVRMRANPLAYGISHKAYQMDPTLRKH 950
Query: 968 RADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNE--HLKPTMG 1025
R L+ LD+ +++++ ++GYF TDLGR AS+YYI + TI T+NE T G
Sbjct: 951 REQLLIEVGQKLDKARMIRFEERTGYFSSTDLGRTASHYYIKYNTIETFNELFDAHKTEG 1010
Query: 1026 DIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRV-PIPVKESLEEPSAKINVLLQAYISQ 1084
DI + S +EEF + VR++E EL LL+ + +E KIN+LLQ YIS+
Sbjct: 1011 DI--FAIVSKAEEFDQIKVREEEIEELDALLNNFCELSAPGGVENSYGKINILLQTYISR 1068
Query: 1085 LKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPL 1144
+++ SL SD ++ Q+A R++RALFEI L++ W + + LNLSK++ KR+W +PL
Sbjct: 1069 GEMDSFSLISDSAYVAQNAARIVRALFEIALRKRWPTMTYRLLNLSKVIDKRLWGWASPL 1128
Query: 1145 RQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAH 1204
RQF+ +P IL +LE+K+ ++ D+ E+G ++ +G + + VHQ P + + A
Sbjct: 1129 RQFSVLPPHILTRLEEKNLTVDKLKDMRKDEIGHILHHVNIGLKVKQCVHQIPSVTMEAS 1188
Query: 1205 VQPITRTVLKVELTITPDFLWDDKVHGYV-EPFWVIVEDNDGEYILHHEYFM-LKKQYI- 1261
+QPITRTVL+V L I PDF W+D+VHG V EP+W+ VED ++I H EYF+ LKKQ I
Sbjct: 1189 IQPITRTVLRVSLNIYPDFSWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFLALKKQVIN 1248
Query: 1262 EEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGV-LVCV 1297
+E L FT+PI+EPLP QY+IR VSD+WLG VC+
Sbjct: 1249 KEAQLLVFTIPIFEPLPSQYYIRAVSDRWLGAEAVCI 1285
Score = 877 (313.8 bits), Expect = 4.0e-87, Sum P(3) = 4.0e-87
Identities = 224/691 (32%), Positives = 361/691 (52%)
Query: 472 PNEKLIKISEMPEWAQ--PAFKGM---TQLNRVQSRVYKSALSSADNILLCAPTGAGKTN 526
P+ +L+ + +P A A++ + + N VQ++++ + + N+LL APTG+GKT
Sbjct: 1299 PHTELLDLQPLPVTALGCKAYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTV 1358
Query: 527 VAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVRELS 585
A L I + N+ + K VY+AP+KALV E + + R++ KV EL+
Sbjct: 1359 AAELAIFR--VFNK-------YPTSKAVYIAPLKALVRERMDDWKIRIEEKLGKKVIELT 1409
Query: 586 GDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLES 645
GD T + I + +IVTTPEKWD ++R +R+Y Q V RGPVLE
Sbjct: 1410 GDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRSYVQQVNILIIDEIHLLGEERGPVLEV 1469
Query: 646 IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYI 705
IV+RT T++ +R+VGLS L N D+A +L + + GLF F S RPVPL
Sbjct: 1470 IVSRTNFISSHTEKPVRIVGLSTALANARDLADWLNIK-QMGLFNFRPSVRPVPLEVHIQ 1528
Query: 706 GIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGR 765
G + R MN +++ L+ + I A E D +
Sbjct: 1529 GFPGQHYCPRMASMNKPAFQESHTHCPDRPCLLLPERMLSSMTKLELIAFLATEEDPK-Q 1587
Query: 766 FLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLV 825
+L D E + + V+ ++LK L +G +HHAG+ DR+ VE+LF + VQVL+
Sbjct: 1588 WLNMDEQEMENIIA---TVRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLI 1644
Query: 826 STATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885
+T+TLAWGVN PAH VIIKGT+ Y+ + + + D++QM+GRAGRPQ+D G+ +I+
Sbjct: 1645 ATSTLAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVIL 1704
Query: 886 TGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRML 945
+ +Y + + P+ES + L+D LNAEI GT+ + ++A ++I +TY + R++
Sbjct: 1705 VHDIKKDFYKKFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQDALDYITWTYFFRRLI 1764
Query: 946 RNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASY 1005
NP+ Y L + +D + + + L+ + L+ ++ ++ + + GRIASY
Sbjct: 1765 MNPSYYNLGD--VSQD-AINKFLSHLIGQSLVELELSHCIEVGEDNRSIEPLTCGRIASY 1821
Query: 1006 YYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDE---KMELAKLLDRVPIP 1062
YY+ H T+ + + LKP EL + S +EE+ + VR +E ELAK L PI
Sbjct: 1822 YYLKHKTVKMFKDRLKPECSTEELLSILSDAEEYTDLPVRHNEDHTNNELAKCL---PIE 1878
Query: 1063 VK-ESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQ 1121
+ S + P K ++LLQA++S+ L +D + A R+ +A+ ++ +GW
Sbjct: 1879 LNPHSFDSPHTKAHLLLQAHLSRAMLPCPDYDTDTKTVLDQALRVCQAMLDVAASQGWLV 1938
Query: 1122 LAEKALNLSKMVTKRMWSVQTPLRQFNGIPN 1152
+L +MV + W + L IPN
Sbjct: 1939 TTLNITHLIQMVIQGRWLKDSSLLT---IPN 1966
Score = 55 (24.4 bits), Expect = 7.0e-222, Sum P(3) = 7.0e-222
Identities = 12/51 (23%), Positives = 28/51 (54%)
Query: 450 QRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQ 500
++F N+ ++E + P +K P++ + + E+ ++ K MT+ RV+
Sbjct: 197 KKFLNEQFQEPYTPELK--PVEKSNGSLLWCEVEKYLNATLKEMTEAPRVE 245
Score = 51 (23.0 bits), Expect = 1.9e-221, Sum P(3) = 1.9e-221
Identities = 23/102 (22%), Positives = 47/102 (46%)
Query: 293 EVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEE 352
++L GD E++++L L LI+ LL+NR+ +V R + + + +++
Sbjct: 253 DMLASAKSGD--ELQDELFELLGPGGLDLIEKLLQNRITIV--DRFLNSSSDHKFQVLQD 308
Query: 353 EMMGLGPDLAAILDQLHATRATAK-ERQKNLEKSIREEARRL 393
+ L + + T + E++K L K R E +R+
Sbjct: 309 NCKKI---LGENAKPNYGCQVTIQSEQEKQLMKQYRREEKRI 347
Score = 37 (18.1 bits), Expect = 7.0e-222, Sum P(3) = 7.0e-222
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 1225 WDDKVHGYVE 1234
WDD V G+ E
Sbjct: 2046 WDDSVEGHNE 2055
>MGI|MGI:1925237 [details] [associations]
symbol:Ascc3 "activating signal cointegrator 1 complex
subunit 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006307 "DNA dealkylation involved in DNA repair"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0032508 "DNA duplex unwinding" evidence=ISO] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 MGI:MGI:1925237 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0006355 GO:GO:0006307 GO:GO:0008283
GO:GO:0006351 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 CTD:10973 GeneTree:ENSGT00700000104562 KO:K01529
OMA:FPGKHYC GO:GO:0043140 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 EMBL:AC137877 EMBL:AC153529
EMBL:AC159114 EMBL:BC032189 EMBL:BC059917 EMBL:AK021027
EMBL:AK052745 IPI:IPI00553687 RefSeq:NP_932124.2 UniGene:Mm.222497
PRIDE:E9PZJ8 Ensembl:ENSMUST00000035606 GeneID:77987 KEGG:mmu:77987
HOGENOM:HOG000157749 NextBio:347945 Bgee:E9PZJ8 Uniprot:E9PZJ8
Length = 2198
Score = 2085 (739.0 bits), Expect = 3.0e-221, Sum P(3) = 3.0e-221
Identities = 415/870 (47%), Positives = 584/870 (67%)
Query: 437 FMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQL 496
F+A K LPEG QR K YEE+ +P + P+ EK + I ++ E Q AFKGM +L
Sbjct: 419 FIAGAKMILPEGIQRENTKLYEEVRIPYGEPMPVGFEEKPVYIKDLDEVGQLAFKGMKRL 478
Query: 497 NRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYV 556
NR+QS V+++A ++ +N+L+CAPTGAGKTN+A+LTIL ++ + + G + +KIVYV
Sbjct: 479 NRIQSIVFETAYNTNENMLICAPTGAGKTNIAMLTILHEIRQHFHQ-GVIKKNEFKIVYV 537
Query: 557 APMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS- 615
APMKAL AE+ S RL+ + V+EL+GD L++ +I TQ++VTTPEKWD++TRKS
Sbjct: 538 APMKALAAEMTNYFSKRLEPLGIVVKELTGDMQLSKSEILRTQMLVTTPEKWDVVTRKSV 597
Query: 616 GDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYED 675
GD +Q+VK +RGPVLESIVART+RQ+E+T+ IR++GLSATLPNY D
Sbjct: 598 GDVALSQIVKLLILDEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLD 657
Query: 676 VALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKH 734
VA FL VN GLFYFD +RPVPL Q ++GI+ +Q+ M+++CYE V+ V H
Sbjct: 658 VATFLHVNPYIGLFYFDGRFRPVPLGQTFLGIKSTNKMQQLNNMDEVCYESVLKQVKAGH 717
Query: 735 QVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLP 794
QV++FVH+R T +TA ++ + A + + FL + ++ +++L
Sbjct: 718 QVMVFVHARNATVRTAMSLIERAKNSGQISCFLPTEGPEYGHALKQVQKSRNKQVRELFS 777
Query: 795 YGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKG 854
GF+IHHAGM R DR LVE+LF +GH++VLV TATLAWGVNLPAH V+IKGTQIY ++G
Sbjct: 778 DGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVVIKGTQIYAAKRG 837
Query: 855 AWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLAD 914
++ +L LD+MQ+ GRAGRPQ+D +GEGIIIT H +L +YLSL+ QQ PIESQF+ LAD
Sbjct: 838 SFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLSLLTQQNPIESQFLESLAD 897
Query: 915 QLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHT 974
LNAEI LGTV N +EA W+ YTYLY+RM NP YG++ + + D TL + R L+
Sbjct: 898 NLNAEIALGTVTNVEEAVRWMSYTYLYVRMRANPLAYGISHKAYQIDPTLRKHREQLLIE 957
Query: 975 AATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNE--HLKPTMGDIELCRL 1032
LD+ +++++ ++GYF TDLGR AS++YI + TI T+NE T GDI +
Sbjct: 958 VGQKLDKAKMIRFEERTGYFSSTDLGRTASHFYIKYNTIETFNELFDAHKTEGDI--FAI 1015
Query: 1033 FSLSEEFKYVTVRQDEKMELAKLLDRV-PIPVKESLEEPSAKINVLLQAYISQLKLEGLS 1091
S +EEF + VR++E EL LL+ + +E KIN+LLQ YIS+ +++ S
Sbjct: 1016 VSKAEEFDQIKVREEEIEELDALLNNFCELSAPGGVENSYGKINILLQTYISRGEMDSFS 1075
Query: 1092 LTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIP 1151
L SD ++ Q+A R++RALFEI L++ W + + LNLSK++ KR+W +PLRQF+ +P
Sbjct: 1076 LISDSAYVAQNAARIVRALFEIALRKRWPTMTYRLLNLSKVIDKRLWGWASPLRQFSVLP 1135
Query: 1152 NEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRT 1211
IL +LE+K+ ++ D+ E+G ++ +G + + VHQ P + + A +QPITRT
Sbjct: 1136 PHILTRLEEKNLTVDKLKDMRKDEIGHILHHVNIGLKVKQCVHQIPSVTMEASIQPITRT 1195
Query: 1212 VLKVELTITPDFLWDDKVHGYV-EPFWVIVEDNDGEYILHHEYFM-LKKQYI-EEDHSLN 1268
VL+V L I PDF W+D+VHG V EP+W+ VED ++I H EYF+ LKKQ I +E L
Sbjct: 1196 VLRVSLNIHPDFSWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFLALKKQVINKEAQLLV 1255
Query: 1269 FTVPIYEPLPPQYFIRVVSDKWLGV-LVCV 1297
FT+PI+EPLP QY+IR VSD+WLG VC+
Sbjct: 1256 FTIPIFEPLPSQYYIRAVSDRWLGAEAVCI 1285
Score = 920 (328.9 bits), Expect = 4.0e-94, Sum P(3) = 4.0e-94
Identities = 249/785 (31%), Positives = 404/785 (51%)
Query: 472 PNEKLIKISEMPEWAQ--PAFKGM---TQLNRVQSRVYKSALSSADNILLCAPTGAGKTN 526
P+ +L+ + +P A A++ + + N VQ++++ + + N+LL APTG+GKT
Sbjct: 1299 PHTELLDLQPLPITALGCKAYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTV 1358
Query: 527 VAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVRELS 585
A L I + N+ + K VY+AP+KALV E + + R++ KV EL+
Sbjct: 1359 AAELAIFR--VFNK-------YPTSKAVYIAPLKALVRERMDDWKIRIEEKLGKKVIELT 1409
Query: 586 GDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLES 645
GD T + I + +IVTTPEKWD ++R +R+Y Q V RGPVLE
Sbjct: 1410 GDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRSYVQQVNILIIDEIHLLGEERGPVLEV 1469
Query: 646 IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYI 705
IV+RT T++ +R+VGLS L N D+A +L + + GLF F S RPVPL
Sbjct: 1470 IVSRTNFISSHTEKPVRIVGLSTALANARDLADWLNIK-QMGLFNFRPSVRPVPLEVHIQ 1528
Query: 706 GIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTA-RAIRDTALENDTLG 764
G + R MN ++ + + + VLIFV SR++T TA I A E D
Sbjct: 1529 GFPGQHYCPRMASMNKPAFQAIRSHSPAKPVLIFVSSRRQTRLTALELIAFLATEEDPK- 1587
Query: 765 RFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVL 824
++L D + + + V+ ++LK L +G +HHAG+ DR+ VE+LF + VQVL
Sbjct: 1588 QWLNMDE---QEMDNIIGTVRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVL 1644
Query: 825 VSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGII 884
++T+TLAWGVN PAH VIIKGT+ Y+ + + + D++QM+GRAGRPQ+D G+ +I
Sbjct: 1645 IATSTLAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVI 1704
Query: 885 ITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRM 944
+ + +Y + + P+ES + L+D LNAEI GT+ + ++A ++I +TY + R+
Sbjct: 1705 LVHDIKKDFYKKFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQDAMDYITWTYFFRRL 1764
Query: 945 LRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIAS 1004
+ NP+ Y L + +D ++ + + L+ + L+ ++ ++ + + GRIAS
Sbjct: 1765 IMNPSYYSLGD--VSQD-SINKFLSHLIGQSLVELELSHCIEVGEDNRTIEPLTCGRIAS 1821
Query: 1005 YYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDE---KMELAKLLDRVPI 1061
YYY+ H T+ + + LKP EL + S +EE+ + VR +E ELAK L PI
Sbjct: 1822 YYYLKHKTVKMFKDRLKPECSTEELLSILSDAEEYTDLPVRHNEDHTNNELAKCL---PI 1878
Query: 1062 PVK-ESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWA 1120
+ S + P K ++LLQA++S+ L +D + A R+ +A+ ++ +GW
Sbjct: 1879 ELNPHSFDSPHTKAHLLLQAHLSRAMLPCPDYDTDTKTVLDQALRVCQAMLDVAASQGWL 1938
Query: 1121 QLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELI 1180
+L +MV + W + L I L K W+ S + I
Sbjct: 1939 VTVLNITHLIQMVIQGRWLKDSSLLTIPNIEQHHLHLFRK----WKPPVKSSHAKCRTSI 1994
Query: 1181 R-FPKMGRTLHKFVHQFPKLILAAHVQP---------ITRT-VLKVELTITPDFLWDDKV 1229
P++ H F ++ +QP ++R V+ V +++ WDD V
Sbjct: 1995 ECLPELIHACEGKDHVFSSMV-EKELQPAKTKQAWNFLSRLPVINVGISVKGS--WDDLV 2051
Query: 1230 HGYVE 1234
G+ E
Sbjct: 2052 EGHNE 2056
Score = 54 (24.1 bits), Expect = 3.0e-221, Sum P(3) = 3.0e-221
Identities = 12/51 (23%), Positives = 27/51 (52%)
Query: 450 QRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQ 500
++F N+ ++E + P +K P++ + E+ ++ K MT+ RV+
Sbjct: 197 KKFLNEQFQEPYTPELK--PVEKTNGSLLWCEVEKYLNATLKEMTEAARVE 245
Score = 53 (23.7 bits), Expect = 3.8e-221, Sum P(3) = 3.8e-221
Identities = 23/102 (22%), Positives = 48/102 (47%)
Query: 293 EVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEE 352
++L GD E++++L L + LI+ LL+NR+ +V R + + + +++
Sbjct: 253 DMLASAKSGD--ELQDELFELLGPEGLDLIEKLLQNRITIV--DRFLNSSSDHKFQVLQD 308
Query: 353 EMMGLGPDLAAILDQLHATRATAK-ERQKNLEKSIREEARRL 393
+ L + + T + E++K L K R E +R+
Sbjct: 309 SCKKI---LGENSKPNYGCQVTIQSEQEKQLMKQYRREEKRI 347
Score = 37 (18.1 bits), Expect = 3.0e-221, Sum P(3) = 3.0e-221
Identities = 9/37 (24%), Positives = 20/37 (54%)
Query: 262 VQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKIL 298
V D W +KI + +++++ + Q + E++ IL
Sbjct: 40 VLDFGLTW--KKIVKFLNEKLEKNKMQNINEDLKDIL 74
>FB|FBgn0038344 [details] [associations]
symbol:CG5205 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0004386
"helicase activity" evidence=ISS] [GO:0005682 "U5 snRNP"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0006200 GO:GO:0005682 GO:GO:0003676
GO:GO:0004386 GO:GO:0000398 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00700000104562 KO:K01529 OMA:FPGKHYC
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
GO:GO:0008026 GO:GO:0016779 FlyBase:FBgn0038344 RefSeq:NP_650472.2
UniGene:Dm.1213 ProteinModelPortal:Q9VF56 SMR:Q9VF56
EnsemblMetazoa:FBtr0083147 GeneID:41891 KEGG:dme:Dmel_CG5205
UCSC:CG5205-RA InParanoid:Q9VF56 PhylomeDB:Q9VF56 GenomeRNAi:41891
NextBio:826131 ArrayExpress:Q9VF56 Bgee:Q9VF56 Uniprot:Q9VF56
Length = 2183
Score = 1960 (695.0 bits), Expect = 9.6e-209, Sum P(2) = 9.6e-209
Identities = 410/970 (42%), Positives = 596/970 (61%)
Query: 337 RLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDE 396
+L++ Q +EE KK++ M + D A D A + ++ + ++ + E A+R E
Sbjct: 334 QLSKMQRREE-KKLQRIMRSI-KDEEAEDDPNCAVAVSVQQLRMQHQRKLLEAAQR---E 388
Query: 397 SASXXXXXXXXXXXXXXXXXWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKG 456
+ + D LA Q G F+ + LP+ +QR NK
Sbjct: 389 PLLLSTKAAKAEYKQSSYNQPIHYPYVFDSQLLAKQHAG-FIGGSRITLPDNAQRIDNKQ 447
Query: 457 YEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILL 516
+EE+ +PA + PL K ++I E+ + + AF +LNR+QS V+ A S +N+L+
Sbjct: 448 WEEVKIPASEPPPLSVGNKRVQIEELDDVGRLAFANCKELNRIQSVVFPVAYHSNENMLV 507
Query: 517 CAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQM 576
CAPTGAGKTNVA+L+I+ + + + G N +KIVY+APMKAL AE+V N S RL+
Sbjct: 508 CAPTGAGKTNVAMLSIVHTIRCHL-EQGVINRDEFKIVYIAPMKALAAEMVDNFSKRLKS 566
Query: 577 YDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRK-SGDRTYTQLVKXXXXXXXXXX 635
+ VREL+GD LT+ ++ TQI+VTTPEKWD++TRK SGD LV+
Sbjct: 567 LQIAVRELTGDIQLTKAEMAATQILVTTPEKWDVVTRKGSGDVALISLVELLIIDEVHLL 626
Query: 636 XXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSY 695
RGPV+E++VART+R +E+++ IR+VGLSATLPNY DVA FLRVN KGLFYFD+ +
Sbjct: 627 HGERGPVVEALVARTLRLVESSQSMIRIVGLSATLPNYIDVAHFLRVNPMKGLFYFDSRF 686
Query: 696 RPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGK-HQVLIFVHSRKETAKTARAIR 754
RPVPL ++GI+ K LQ+ M+ CY+K V + + HQ+++FVH+R T +TA IR
Sbjct: 687 RPVPLDTNFVGIKSVKQLQQIADMDQCCYQKCVEMVQEGHQIMVFVHARNATVRTANVIR 746
Query: 755 DTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVED 814
+ A +N+T FL +DS + + ++ L +L G A+HHAGM R DRQ+VE
Sbjct: 747 ELAQQNNTSALFLPKDSAAHGLATRSIQRSRNKQLVELFSCGLAMHHAGMLRADRQMVEK 806
Query: 815 LFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRP 874
F +GH+ VLV TATLAWGVNLPAH VII+GT IY+ + G++ +L LD++Q+ GRAGRP
Sbjct: 807 YFVEGHISVLVCTATLAWGVNLPAHAVIIRGTDIYDAKHGSFVDLGILDVLQIFGRAGRP 866
Query: 875 QYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNW 934
Q+D G G IIT + +L +YLSL+ Q PIES FV+ LAD LNAEI LGT+ N EA W
Sbjct: 867 QFDKSGVGTIITSYDKLNHYLSLLTNQFPIESNFVNCLADNLNAEIGLGTITNVDEAIEW 926
Query: 935 IGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYF 994
+ YTYL++RM NP +YG+ L++D TL RR L+ +AA LD+ ++++++++
Sbjct: 927 LSYTYLFVRMRINPHVYGIEYSELEKDPTLEARRRALIMSAAMSLDKARMMRFNQRTMDM 986
Query: 995 QVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAK 1054
+TDLGR ASY+YI + T+ T+NE +KP M E+ + S ++EF+ + VR DE EL +
Sbjct: 987 NITDLGRTASYFYIKYDTVETFNELMKPFMTQAEILAMISQAQEFQQLKVRDDEMEELDE 1046
Query: 1055 LLDRV-PIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEI 1113
L + I E K+N+L+Q Y+S ++ SL+SDM +IT + GR+ RALF I
Sbjct: 1047 LKNAYCKIKPYGGSENVHGKVNILIQTYLSNGYVKSFSLSSDMSYITTNIGRISRALFSI 1106
Query: 1114 VLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSP 1173
VL++ A L+ L L KM +R W L+QF I E + KLE++ + R D+
Sbjct: 1107 VLRQNNAVLSGNMLQLCKMFERRQWDFDCHLKQFPTINAETIDKLERRGLSVYRLRDMEH 1166
Query: 1174 QELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYV 1233
+EL E +R + + H+ P L + A +QPITRTVL++++ I P F W+D+VHG
Sbjct: 1167 RELKEWLRSNTYADLVIRSAHELPLLEVEASLQPITRTVLRIKVDIWPSFTWNDRVHGKT 1226
Query: 1234 -EPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHS--LNFTVPIYEPLPPQYFIRVVSDKW 1290
+ FW+ +ED + YI H E F + ++ + S L T+P+ EPLPPQY+IRV SD W
Sbjct: 1227 CQSFWLWIEDPESNYIYHSELFQVTRKLVMSGQSQQLVMTIPLKEPLPPQYYIRVSSDNW 1286
Query: 1291 LGVLVCVWLN 1300
LG C+ L+
Sbjct: 1287 LGSTTCIPLS 1296
Score = 913 (326.5 bits), Expect = 3.3e-95, Sum P(2) = 3.3e-95
Identities = 234/689 (33%), Positives = 364/689 (52%)
Query: 459 EIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCA 518
E H P + PL P + +S + + T N +Q++++ + +N+LL A
Sbjct: 1304 EHHPPLTELLPLRP----LPVSCLKNVVYESLYKFTHFNPIQTQIFHCLYHTDNNVLLGA 1359
Query: 519 PTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYD 578
PTG+GKT VA + I + ALN+N K+VY+AP+KALV E + + R Q
Sbjct: 1360 PTGSGKTIVAEIAIFR--ALNQNP-------KCKVVYIAPLKALVKERIADWEQRFQRSS 1410
Query: 579 V--KVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXX 636
+ KV EL+GD T Q I E+Q+IVTTPEKWD I+R R Y Q V
Sbjct: 1411 LGLKVVELTGDVTPDIQAIRESQLIVTTPEKWDGISRSWQTREYVQHVSLIVIDEIHLLG 1470
Query: 637 XNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYR 696
+RGPV+E IV+RT T IR+VGLS L N +D+A +L +N + GL+ F S R
Sbjct: 1471 EDRGPVIEVIVSRTNFISSHTGRAIRIVGLSTALANAQDLANWLGIN-KMGLYNFKPSVR 1529
Query: 697 PVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDT 756
PVPL G K R MN ++ + + ++FV SR++T TA +
Sbjct: 1530 PVPLQVHINGFPGKHYCPRMATMNRPTFQAIRTYSPCEPTIVFVSSRRQTRLTALDLITF 1589
Query: 757 ALENDTLGRFLK--EDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVED 814
+FL ED + ILQ+ ++ +LK L +G +HHAG+ DR+ VE+
Sbjct: 1590 VAGESNPKQFLHIPEDEIEL-ILQN----IREQNLKFCLAFGIGLHHAGLQEQDRKCVEE 1644
Query: 815 LFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRP 874
LF + +Q+LV+TATLAWGVNLPAH V+IKGT+ ++ + + ++ D++QM+GRAGRP
Sbjct: 1645 LFLNRKIQILVATATLAWGVNLPAHLVVIKGTEYFDGKVKKYVDMPITDVLQMMGRAGRP 1704
Query: 875 QYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNW 934
Q+D+ G +++ + +Y + P+ES + L + +NAEIV GTVQ+ + A ++
Sbjct: 1705 QFDNEGVAVVLVHDEKKNFYKKFLYDPFPVESSLLGVLPEHINAEIVAGTVQSKQAALDY 1764
Query: 935 IGYTYLYIRMLRNPALYGLA---PEVLKEDIT-LGERRADLVHTAATILDRNNLVKYDRK 990
+ +TY + R+LRNP+ Y L PE + ++ L ER + AA +++R+
Sbjct: 1765 LTWTYFFRRLLRNPSYYQLQDIEPENVNNFMSNLVERVVYELSAAACLVERD-------- 1816
Query: 991 SGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKM 1050
G T LGRI+SYYY+S+ T+ + E L+P M ++ + S EF + VR +E
Sbjct: 1817 -GCLIPTFLGRISSYYYLSYRTMKHFLEDLQPGMNTKKVLLAIADSYEFDQLPVRHNEDK 1875
Query: 1051 ELAKLLDRVPI-PVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRA 1109
++ + P S + K +LLQA+ ++ L +D +A R+++A
Sbjct: 1876 HNEEMAEVSRFRPPSSSWDSSYTKTFLLLQAHFARQSLPNSDYLTDTKSALDNATRVMQA 1935
Query: 1110 LFEIVLKRGWAQLAEKALNLSKMVTKRMW 1138
+ + +RGW L + V + W
Sbjct: 1936 MVDYTAERGWLSTTLVVQQLMQSVIQARW 1964
Score = 81 (33.6 bits), Expect = 9.6e-209, Sum P(2) = 9.6e-209
Identities = 32/112 (28%), Positives = 52/112 (46%)
Query: 297 ILAEGDDREV-ENKLLYHLQFDKFSLIKFLLRNRLKVV-----WCTRLARAQDQEERKKI 350
IL EV +N+L+ L FD F L++ LL R K+ + TR R + ++ K++
Sbjct: 248 ILGSQRSSEVLQNELMEILGFDYFELVEKLLMERDKIARQLDQFATRSRRVMEVKQ-KRM 306
Query: 351 EEEMMGLG----PDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESA 398
E G P +A+ + A + Q+ EK ++ R +KDE A
Sbjct: 307 EAAASGGAAERRPTVASAVVVQSAQEKQLSKMQRREEKKLQRIMRSIKDEEA 358
>DICTYBASE|DDB_G0290389 [details] [associations]
symbol:ascc3 "activating signal cointegrator 1
complex subunit" species:44689 "Dictyostelium discoideum"
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 dictyBase:DDB_G0290389 GO:GO:0005524
GO:GO:0006355 GO:GO:0006351 GenomeReviews:CM000154_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:FPGKHYC
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 GO:GO:0008026 EMBL:AAFI02000163 RefSeq:XP_635715.1
ProteinModelPortal:Q54G57 EnsemblProtists:DDB0233132 GeneID:8627633
KEGG:ddi:DDB_G0290389 InParanoid:Q54G57 KO:K15271
ProtClustDB:CLSZ2429672 Uniprot:Q54G57
Length = 2195
Score = 1960 (695.0 bits), Expect = 1.2e-207, Sum P(3) = 1.2e-207
Identities = 387/856 (45%), Positives = 565/856 (66%)
Query: 442 KCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISE-MPEWAQPAFKGMTQLNRVQ 500
K LP+G+ R + E+ VP KP NEKLI+I E + E ++ AF + +LNR+Q
Sbjct: 428 KIALPKGTVRTEKTTHTEVMVPYSLAKPFADNEKLIEIGESIAEISRAAFGSIKKLNRIQ 487
Query: 501 SRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMK 560
SRV++SA S +NIL+ APTGAGKTN+A+LTIL ++ N N G + N+KI+Y+AP+K
Sbjct: 488 SRVFESAYKSNENILISAPTGAGKTNIALLTILHEIESNINPYGYLDKDNFKIIYIAPLK 547
Query: 561 ALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTY 620
AL +E+V SN L+ + +EL+GD LT+++++ETQIIVTTPEKWD+ITRKS D
Sbjct: 548 ALASEMVEKFSNSLKYLGIVSKELTGDMQLTQKELKETQIIVTTPEKWDVITRKSSDVAL 607
Query: 621 TQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFL 680
T+LV+ RGPVLE IVART+RQ+ETT+E IR+VGLSATLPNY+DVA F+
Sbjct: 608 TKLVRLIIIDEIHLLHEERGPVLECIVARTLRQVETTQEMIRIVGLSATLPNYKDVARFI 667
Query: 681 RVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQL-MNDLCYEKVV-AVAGKHQVLI 738
R G +FD+SYRPVPL+Q +IG++ + + + MN LCYE++ ++ HQV+I
Sbjct: 668 RAPAS-GTHFFDSSYRPVPLTQNFIGVKDNQGIMVMKNNMNQLCYERLEKSLKEGHQVMI 726
Query: 739 FVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFA 798
FVHSRK+T K+A + D A E RF E+ + + VKS +++ L +G +
Sbjct: 727 FVHSRKDTVKSAEILSDMAKEKHF--RFSNEEPSFGA--KKEFEKVKSKEIRSLFQHGIS 782
Query: 799 IHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTE 858
+HHAG+ R DR +VE F +G ++VLV TATLAWGVNLPAHTVIIKGTQ+YN + G + +
Sbjct: 783 VHHAGLLRSDRNVVEKYFANGTIKVLVCTATLAWGVNLPAHTVIIKGTQVYNAKNGGFMD 842
Query: 859 LSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNA 918
L D+MQ+ GRAGRPQ+D+ GEG ++T +L +YLSLM+ +PIES+F++ L D LNA
Sbjct: 843 LGISDVMQIFGRAGRPQFDTSGEGFLLTSKDKLDHYLSLMSSSMPIESKFITNLEDHLNA 902
Query: 919 EIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATI 978
EIVLGTV N EA NW+ YTYL+IRML+NP +YG+ +D L E + +++ AA
Sbjct: 903 EIVLGTVSNVNEAVNWLSYTYLFIRMLQNPLVYGIPSSQRSKDPQLEEFKREIIIRAAKK 962
Query: 979 LDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEE 1038
L++ + ++D +S +T+LGRIAS+YYI H +I T+NE L +G ++ + S S E
Sbjct: 963 LEQCKMTRFDEQSENLGMTELGRIASHYYIKHPSIETFNEMLNDQLGQDQVLNILSNSSE 1022
Query: 1039 FKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVF 1098
F+ +T+R++E EL KL + L+ S K+ LLQA+ S+ ++G SL SD +
Sbjct: 1023 FENITLREEESTELDKLAENQCYYELTVLDSHS-KVKCLLQAFFSRANIDGFSLVSDSNY 1081
Query: 1099 ITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKL 1158
Q++ R+LR LFEI LK+GW +++ L+L KMV ++W ++PLRQ + + + K+
Sbjct: 1082 TVQNSSRILRGLFEISLKKGWCTVSKTILDLCKMVDHQLWHFESPLRQAKVLSLDTIRKI 1141
Query: 1159 EKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELT 1218
E++D+ ER D+ EL ++ + +T K QFP+L VQPIT ++++ +T
Sbjct: 1142 EERDWTPERICDMEIGELSFVLGNQLIAKTTRKIAQQFPQLDFEIQVQPITANIIRINMT 1201
Query: 1219 ITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFT--VPIYEP 1276
+ P F W+DK+HG +PFW+ V+DN+ +YI H EYFML K+ + + T +P+ P
Sbjct: 1202 LIPMFSWNDKMHGDSQPFWIWVQDNESQYIFHSEYFMLTKKIYNQTEPITLTCIIPLPNP 1261
Query: 1277 LPPQYFIRVVSDKWLG 1292
+P Q+F+ +SD+WLG
Sbjct: 1262 MPSQFFLHYISDRWLG 1277
Score = 890 (318.4 bits), Expect = 3.8e-92, Sum P(4) = 3.8e-92
Identities = 214/681 (31%), Positives = 372/681 (54%)
Query: 473 NEKLIKISEMPEWA------QPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTN 526
N +L+ + +P+ A + FK + N +Q++V+ + + +N+LL +PTG+GKT
Sbjct: 1299 NTELLDLQPLPKEALKNKDFESLFK-FSHFNPIQTQVFHTLYYTNNNVLLGSPTGSGKTI 1357
Query: 527 VAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVRELS 585
A L + + D+ + K+VY+AP+KALV E + + + Q K+ EL+
Sbjct: 1358 CAELAMFKVF----RDE-----PHMKVVYIAPLKALVRERMNDWKVKFQEKLGKKLVELT 1408
Query: 586 GDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLES 645
GD T ++ I+ TTPEKWD I+R +R+Y V RGP+LE
Sbjct: 1409 GDYTPNMIALQNADIVTTTPEKWDGISRNWKNRSYVTSVSLLIIDEIHLIGELRGPILEV 1468
Query: 646 IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYI 705
IV+R + T +IR+VGLS + N D++ ++ ++ GLF F S RPVP+
Sbjct: 1469 IVSRMKLISKQTGVNIRVVGLSTAMANAIDLSEWMGID-RVGLFNFRPSCRPVPIEVHIQ 1527
Query: 706 GIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTAR-AIRDTALENDTLG 764
G Q K R Q MN + + + K VLIFV SR++T TA I ++ND L
Sbjct: 1528 GFQGKNYCPRMQTMNKPSFAAIATYSPKKPVLIFVSSRRQTRLTALDLISYLVVDNDPLQ 1587
Query: 765 RFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVL 824
K + + + VK L+ L +G +HHAG+ GDR +VE LFG+ +Q+L
Sbjct: 1588 WIQKGFDIEPTLAR-----VKDQHLRHTLSFGIGMHHAGLNDGDRTIVESLFGENKIQIL 1642
Query: 825 VSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGII 884
+ST+TLAWGVNLPAH VIIKGT+ ++ + + + D++QM+GRAGRPQ+D G+ ++
Sbjct: 1643 ISTSTLAWGVNLPAHLVIIKGTEYFDGKTKRYVDFPLTDVLQMIGRAGRPQFDKEGKAMV 1702
Query: 885 ITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRM 944
+ + ++Y + P+ES L D LNAEIV GT+Q+ + A N++ T+ + R+
Sbjct: 1703 MVHEPKKQFYKKFLYDPFPVESHLKDFLHDHLNAEIVSGTIQSKQGAINYLVNTFFFRRL 1762
Query: 945 LRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIAS 1004
+ +P+ YGL ++ + + +DL+ + L++++ ++ + ++ +G+IAS
Sbjct: 1763 VVSPSYYGLEDNSVE---AVNQYLSDLLDSTLADLEQSSCIEINEYDEIIPMS-MGKIAS 1818
Query: 1005 YYYISHGTISTYNEHLKPTMGDIE-LCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPV 1063
+YY+++ T+ +++++K DI+ L R+ S + E+ VR +E++ +L + +PI +
Sbjct: 1819 FYYLNYKTVQNFSDNIKRD-SDIKTLLRVLSDAAEYSEFPVRHNEEILNQELNENLPIKI 1877
Query: 1064 KESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLA 1123
+ E+ K+++LLQA+ + L T+D R+L+A+ ++ + G+ A
Sbjct: 1878 G-NYEDSHTKVHLLLQAHFQRCPLPITDFTTDTKSALDQGIRILQAMIDVSFEYGYFATA 1936
Query: 1124 EKALNLSKMVTKRMWSVQTPL 1144
+ + L +M+ + W + L
Sbjct: 1937 IQVIRLLQMLVQGRWDYDSSL 1957
Score = 46 (21.3 bits), Expect = 1.2e-207, Sum P(3) = 1.2e-207
Identities = 25/91 (27%), Positives = 51/91 (56%)
Query: 284 PQQCQKLAEEVLKILAEGDDREVE-NKLL---YHLQF--DKFSLIKFLLRNRLKVVWCTR 337
P Q +K ++++ K+ A G +E N ++ Y +++ ++ S+I L + ++ T
Sbjct: 239 PGQIKK-SKKLKKLAAAGGSNNLESNNVVDSTYTIEWLREECSVISIGLGIPSEEIYNTI 297
Query: 338 LARAQDQEERKKIEEEMMGL-GPD-LAAILD 366
++ ++++E IEE+M+GL G D L I D
Sbjct: 298 MSFLKNKKET--IEEDMIGLLGFDHLELIAD 326
Score = 41 (19.5 bits), Expect = 1.2e-207, Sum P(3) = 1.2e-207
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 131 DEILAVLKNDAVKNPD--KKKEIEKLLN-PIPNHV 162
DEI + N D K+KE EKL+N P+ + V
Sbjct: 200 DEINHFINTKINNNLDEQKEKEKEKLINTPLSDMV 234
Score = 39 (18.8 bits), Expect = 2.0e-207, Sum P(3) = 2.0e-207
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 139 NDAVKNPDKKKEIEKLLNPIPNHVFDQL 166
+D+ +N +K+KE ++ N V + +
Sbjct: 66 SDSKQNKEKEKENRQIFNKFKEIVLEMI 93
Score = 39 (18.8 bits), Expect = 3.8e-92, Sum P(4) = 3.8e-92
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 418 LGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRF 452
L Q ++L LDT+ + + R CD+ G F
Sbjct: 1127 LRQAKVLSLDTIRKIEERDWTPERICDMEIGELSF 1161
Score = 37 (18.1 bits), Expect = 1.5e-89, Sum P(3) = 1.5e-89
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 272 RKISQAFDQQIDPQQCQKLAEEVLKI 297
RKI+Q F Q Q Q + +++I
Sbjct: 1173 RKIAQQFPQLDFEIQVQPITANIIRI 1198
>POMBASE|SPBC13G1.10c [details] [associations]
symbol:mug81 "ATP-dependent RNA helicase Slh1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:2000765 "regulation of
cytoplasmic translation" evidence=ISS] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 PomBase:SPBC13G1.10c
GO:GO:0005829 GO:GO:0005524 GO:GO:0007126 GO:GO:2000765
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K01529
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 HOGENOM:HOG000157749 GO:GO:0004004 PIR:T39411
RefSeq:NP_596560.1 ProteinModelPortal:O60072 PRIDE:O60072
EnsemblFungi:SPBC13G1.10c.1 GeneID:2539673 KEGG:spo:SPBC13G1.10c
OMA:RKPTGEG OrthoDB:EOG4H75KM NextBio:20800827 Uniprot:O60072
Length = 1935
Score = 1921 (681.3 bits), Expect = 2.0e-198, P = 2.0e-198
Identities = 391/865 (45%), Positives = 556/865 (64%)
Query: 441 RKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQ 500
+K LP GS+R + YEEI VP + P EKL++IS M + F LNR+Q
Sbjct: 223 KKFALPAGSEREDYQKYEEIIVPHAQRAPQMQGEKLLEISSMDILCRKTFLSYQTLNRIQ 282
Query: 501 SRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLA-----LNRNDDGS---FNHSNYK 552
S VY A + +N+L+CAPTGAGKT+VA+L +LQ ++ +N D+ + ++K
Sbjct: 283 SLVYPIAYKTNENMLICAPTGAGKTDVALLAMLQTISNYVESMNLMDESEPLDVHRDDFK 342
Query: 553 IVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIIT 612
IVY+APMKAL AEVV + RL +K REL+GD LT+ +I ETQI+VTTPEKWD++T
Sbjct: 343 IVYIAPMKALAAEVVEKMGKRLAWLGLKTRELTGDMQLTKTEIAETQILVTTPEKWDVVT 402
Query: 613 RKS-GDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671
RKS GD + V+ RG V+ES+VART R +ET+++ IR+VGLSATLP
Sbjct: 403 RKSVGDTQLAEKVRLVIIDEVHMLHDERGAVIESLVARTQRLVETSQQMIRIVGLSATLP 462
Query: 672 NYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVA 731
NY DVA FL VN KGLFYF +++RP P+ Q +IG + + + ++ C++KV+ +
Sbjct: 463 NYLDVADFLGVNRYKGLFYFSSAFRPCPIEQHFIGAKGSPKIVNSNI-DEACFDKVLKLI 521
Query: 732 GK-HQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLK 790
+ HQV+IFVHSRKET +A+ +R+ + Q K+ +LK
Sbjct: 522 QEGHQVMIFVHSRKETINSAKKLREQFFHEGEADLLDNSQHEKYSLAQRDVSKSKNKELK 581
Query: 791 DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYN 850
+L Y IH+AGM R DR L E LF G +++L TATLAWGVNLPA+ V+IKGTQ+Y+
Sbjct: 582 ELFKYSMGIHNAGMLRSDRHLTERLFSMGILKILCCTATLAWGVNLPAYAVLIKGTQLYD 641
Query: 851 PEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVS 910
P+KG++ +L LD++Q+ GRAGRPQ++S IIT H +L +Y+S++ QQ PIES+F
Sbjct: 642 PQKGSFVDLGVLDVLQIFGRAGRPQFESSAVAYIITTHDKLSHYISVVTQQSPIESRFTD 701
Query: 911 KLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRAD 970
+L D LNAE+ LGTV N EA +W+GYTYLYIRM RNP +YG+A + L ED LG +R +
Sbjct: 702 RLVDNLNAEVSLGTVTNIDEAVSWLGYTYLYIRMRRNPLVYGIAYDELVEDPLLGSKRRE 761
Query: 971 LVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELC 1030
LV AA L N ++ Y++K+GY DLGRIAS YYI++ T+ST N LK M + ++
Sbjct: 762 LVSVAAGRLADNQMIVYNKKNGYLIPKDLGRIASNYYINYQTVSTLNNLLKSKMSEADII 821
Query: 1031 RLFSLSEEFKYVTVRQDEKMELAKLLDRV-PIPVKESLEEPSAKINVLLQAYISQLKLEG 1089
L S EF + R++E EL L++ P +++S+ S K+NV+LQ+YIS+ +E
Sbjct: 822 ALLSQCSEFSQIKSRENEHRELESLMENSSPCQLRDSISNTSGKVNVILQSYISRAHVED 881
Query: 1090 LSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNG 1149
+LTSD ++ Q+AGR+ RALFEI + R WA A L+L+K + +R WS + PL QF+
Sbjct: 882 FTLTSDTNYVAQNAGRITRALFEIAMSRTWAS-AFTILSLNKSIDRRQWSFEHPLLQFD- 939
Query: 1150 IPNEILMKLEKK--DFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQP 1207
+P+++ +K+E + + E D+S ELG+LI KMG T+ KF+ + P L + + P
Sbjct: 940 LPHDLAVKVENQCGSLSLEELSDMSTGELGDLIHNRKMGPTVKKFISKLPLLNINVDLLP 999
Query: 1208 ITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSL 1267
+T+ VL++ L ITP+F WD + HG + FW+ VED++G ILHHE +L K+ + H L
Sbjct: 1000 LTKNVLRLVLNITPNFNWDMRYHGNSQMFWIFVEDSNGLEILHHEQLLLNKRNVSTSHLL 1059
Query: 1268 NFTVPIYEPLPPQYFIRVVSDKWLG 1292
+FT+P+ PLP Q +I VSDKWLG
Sbjct: 1060 SFTIPVSNPLPSQLYIIAVSDKWLG 1084
Score = 862 (308.5 bits), Expect = 2.1e-83, P = 2.1e-83
Identities = 251/838 (29%), Positives = 416/838 (49%)
Query: 467 HKPLDPNEKLIKISEMPEWA--QPAFKGMTQ-----LNRVQSRVYKSALSSADNILLCAP 519
H +P +L+ + +P A P +G+ N VQ++ + + + NI + AP
Sbjct: 1099 HDDSNPITELLDLQPLPITALHDPVLEGICAKRFSFFNAVQTQFFHTIYHTDTNIFVGAP 1158
Query: 520 TGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL-QMYD 578
TG+GKT A L + L N+ K+VY+APMKALV E V + +RL +
Sbjct: 1159 TGSGKTMAAELATWRAL---------HNYPKSKVVYIAPMKALVKERVKDWGHRLVEPMG 1209
Query: 579 VKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXXN 638
+ + EL+GD + + II+TTPEKWD ITR R Y Q V +
Sbjct: 1210 ISMIELTGDTNPDVKAVTNANIIITTPEKWDGITRSWKSRKYVQDVSLIILDEIHLLGSD 1269
Query: 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPV 698
RGPVLE IV+R T + +R++GLS + N D+A +L N+ GLF F +S RPV
Sbjct: 1270 RGPVLEMIVSRMNYVASQTNKKVRVLGLSTAVANANDLANWL--NIRDGLFNFRHSVRPV 1327
Query: 699 PLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTAR-AIRDTA 757
PL G + R MN ++ + + VLIFV SR++T TA+ I
Sbjct: 1328 PLEIYIDGFPGRAYCPRMMSMNKPAFQAIKTHSPTQPVLIFVSSRRQTRLTAKDLIAFCG 1387
Query: 758 LENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFG 817
LE D RFL D E++ S V+ LK LP+G A+HHAG+T DR++ E+LF
Sbjct: 1388 LE-DNPRRFLYMDEEELEMIVSE---VEDKSLKLALPFGIALHHAGLTENDRKISEELFV 1443
Query: 818 DGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD 877
+ VQ+L++T+TLAWGVN PAH VI+KGT+ Y+ + G + ++ D++QMLGRAGRPQ+D
Sbjct: 1444 NNKVQILIATSTLAWGVNTPAHLVIVKGTEYYDAKIGGYKDMDLTDVLQMLGRAGRPQFD 1503
Query: 878 SYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGY 937
+ G I + +Y ++ P+ES L + LNAEI GT+ + A +++
Sbjct: 1504 NSGVARIFVQDIKKSFYKHFLHSGFPVESYLHKVLDNHLNAEIATGTIDCIQGAMDFLTC 1563
Query: 938 TYLYIRMLRNPALYGLAPEVLKE-DITLGERRADLVHTAATILDRNNLVKYDRKSGYFQV 996
TY Y R+ +NP YG + K D L + LV TA L+++ + Y +
Sbjct: 1564 TYFYRRVHQNPVYYGADGDDQKSIDTYLSK----LVVTAFNELEKSACI-YRVNEETYAP 1618
Query: 997 TDLGRIASYYYISHGTISTYNEHLKPTMG-DIELCRLFSLSEEFKYVTVRQDEKM---EL 1052
T LGRI SYYY+ H TI + + + D+ L +L + + EF + +R +E + E+
Sbjct: 1619 TTLGRIVSYYYLFHTTIRNFVQKITENAEFDLAL-QLLAEASEFDDLAIRHNEDLINIEI 1677
Query: 1053 AKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFE 1112
K L + + + K +L QA++++LKL +D + R++++ +
Sbjct: 1678 NKSLKYSAACLNLPMVDAHVKAFILTQAHMARLKLPVDDYVTDTSTVLDQVIRIIQSYID 1737
Query: 1113 IVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLS 1172
+ + G++ + + ++L + + + + + G+ N K E +D+ ++
Sbjct: 1738 VSAELGYSHVCLQYISLMQCLKQACYPSEIYRASLPGL-NASSEK-EARDYL-NKFAGNK 1794
Query: 1173 PQELGELI-RFPKMG--RTLHKFVHQFPKLILAAHVQPITRTVL---KVELTITPDFLWD 1226
EL +++ P + +L + +PK+ + + +L ++ + PDF
Sbjct: 1795 TDELYQMLCNDPNVFDIESLVNSLISYPKMNIEVSQSSSDKLLLYLRRLNQPLNPDFYIF 1854
Query: 1227 DKVHG--YVEPFWVIVEDNDGEYILHHEYFMLKKQYI---EEDHSLNFTVPIYEPLPP 1279
+ E F+V++ D++ + E F +++ D S+ ++ I +PP
Sbjct: 1855 APLFPKPQSEGFFVLIIDSETQ-----ELFAIRRASFAGRRNDDSIRLSLRISMDIPP 1907
>ASPGD|ASPL0000044033 [details] [associations]
symbol:AN2482 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
EMBL:BN001307 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K01529 OMA:FPGKHYC InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 eggNOG:COG1204
HOGENOM:HOG000157749 GO:GO:0008026 OrthoDB:EOG4H75KM
EMBL:AACD01000041 RefSeq:XP_660086.1 ProteinModelPortal:Q5BAE8
EnsemblFungi:CADANIAT00009203 GeneID:2875191 KEGG:ani:AN2482.2
Uniprot:Q5BAE8
Length = 2015
Score = 1809 (641.9 bits), Expect = 6.2e-197, Sum P(4) = 6.2e-197
Identities = 377/872 (43%), Positives = 538/872 (61%)
Query: 436 LFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQ 495
L + + LP GS++ Y E+ VPA K + +KL+ IS M Q FKG
Sbjct: 226 LALNGKSYGLPLGSRQIDEPKYTEVEVPASKVGTIGQQQKLVPISSMDGLCQGTFKGYKT 285
Query: 496 LNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNR-----NDDGSFNHS- 549
LNR+QS +Y A +++N+L+CAPTGAGKT+ A+LTIL + N G+ S
Sbjct: 286 LNRMQSLLYDVAYKTSENMLICAPTGAGKTDAAMLTILNAVGKNTVPNPAEQPGATEFSV 345
Query: 550 ---NYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPE 606
++KIVYVAPMKAL AEV L RL +KVREL+GD LT+++I ETQIIVTTPE
Sbjct: 346 LVDDFKIVYVAPMKALAAEVTEKLGKRLAWLGIKVRELTGDMQLTKREIVETQIIVTTPE 405
Query: 607 KWDIITRKS-GDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVG 665
KWD++TRKS GD Q V+ RG V+ES+VART RQ+E+T+ IR+VG
Sbjct: 406 KWDVVTRKSTGDTELVQKVRLLIIDEVHMLHDERGAVIESLVARTQRQVESTQSLIRIVG 465
Query: 666 LSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKK-PLQRFQLMNDLCY 724
LSATLPNY DVA FL+VN GLF+FD+S+RPVPL Q +IG++ K Q ++ + +
Sbjct: 466 LSATLPNYVDVADFLKVNKMAGLFFFDSSFRPVPLEQHFIGVKGKPGSKQSRDNIDTVTF 525
Query: 725 EKVVAVAGK-HQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDM 783
EKV + + HQV++FVHSRK+T TAR ++ A+++ F + +
Sbjct: 526 EKVRDMLERGHQVMVFVHSRKDTVLTARMLKQMAVQDGCEALFSCHEHENYSNALRDMKH 585
Query: 784 VKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVII 843
++ +L+DL GF HHAGM+R DR L+E TLAWGVNLPA V+I
Sbjct: 586 ARARELRDLFASGFGTHHAGMSRSDRNLMEP--------------TLAWGVNLPAAAVVI 631
Query: 844 KGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLP 903
KGTQ+YNP++G + +L LD++Q+ GRAGRPQ+ G G I T H +L +YLS + Q P
Sbjct: 632 KGTQLYNPQEGKFVDLGILDVLQIFGRAGRPQFQDTGIGFICTTHDKLNHYLSAVTSQQP 691
Query: 904 IESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDIT 963
IES+F S+L D LNAEI LGTV + E W+GY+YL++RM R P YG+ L +D
Sbjct: 692 IESRFSSRLVDNLNAEIALGTVTSISEGVQWLGYSYLFVRMKREPRNYGIDYTELIDDPG 751
Query: 964 LGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPT 1023
L RR L+ AA +L ++ ++ Y+ K+ + D+GRIAS YY+ +I +NE ++P
Sbjct: 752 LVLRRRQLIIQAALVLQKSQMIIYNEKTEELRAKDVGRIASQYYVLQTSIEIFNELMRPR 811
Query: 1024 MGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDR-VPIPVKESLEEPSAKINVLLQAYI 1082
G+ ++ R+ S+S EF + R++E EL +L + V V+ + AK N+LLQ+YI
Sbjct: 812 SGEADVLRMISMSGEFDNIQSRENESKELTRLREEAVQTEVEGGNDSAQAKTNILLQSYI 871
Query: 1083 SQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQT 1142
S+ K+E +L SD ++ Q+A R+ RALF I L R W + L++ K + K+MW
Sbjct: 872 SRAKIEDFALVSDTGYVAQNAARICRALFMIALNRRWGYQCQVLLSMCKSIEKQMWPFDH 931
Query: 1143 PLRQFNGIPNEILMKLEKK--DFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLI 1200
P RQF+ +P IL LE+K + E D+ ELG+L+ KMG+TL K + FP L
Sbjct: 932 PFRQFD-LPQPILRNLEEKLPTSSVESMRDMETAELGQLVHNHKMGKTLAKLLDNFPTLS 990
Query: 1201 LAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQY 1260
+ A + P+ R VL+V L + P+F W+D+ HG E +W+ VE+++ I HHEYF+L ++
Sbjct: 991 VEAEIAPLNRDVLRVRLMLYPEFTWNDRHHGASESYWIWVENSETSEIYHHEYFILSRKK 1050
Query: 1261 IEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLG 1292
+ +DH LNFT+P+ +PLP Q ++R +SD+WLG
Sbjct: 1051 LYDDHELNFTIPLSDPLPNQIYVRAISDRWLG 1082
Score = 886 (316.9 bits), Expect = 1.8e-94, Sum P(4) = 1.8e-94
Identities = 219/667 (32%), Positives = 354/667 (53%)
Query: 497 NRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYV 556
N +Q++++ +A N+LL +PTG+GKT A L + R GS K+VY+
Sbjct: 1134 NPMQTQLFHVLYHTAANVLLGSPTGSGKTVAAELAMWWAF---RERPGS------KVVYI 1184
Query: 557 APMKALVAEVVGNLSNRLQM-YDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS 615
APMKALV E V + RL +K+ EL+GD T + I + II+TTPEKWD I+R
Sbjct: 1185 APMKALVRERVMDWGRRLTAPMGLKLVELTGDNTPDTRTIRDADIIITTPEKWDGISRSW 1244
Query: 616 GDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYED 675
R Y + V +RGP+LE IV+R +K +RL+G+S N D
Sbjct: 1245 QTRDYVRKVSLVIIDEIHLLGGDRGPILEIIVSRMNYIASQSKGSVRLMGMSTACANASD 1304
Query: 676 VALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKK---PLQRFQLMNDLCYEKVVAVAG 732
+A +L V ++GL+ F +S RPVPL G ++ PL Q MN + + +
Sbjct: 1305 LANWLGV--KEGLYNFRHSVRPVPLEIYIDGFPEQRGFCPLM--QSMNRPTFLAIKNHSP 1360
Query: 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDL 792
+ V++FV SR++T TA+ + + D RF++ +S + LQ + + VK + L++
Sbjct: 1361 EKPVIVFVASRRQTRLTAKDLINFCGMEDNPRRFVR---MSEDDLQLNLERVKDDALREA 1417
Query: 793 LPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPE 852
L +G +HHAG+ DRQL E+LF + +Q+LV+T+TLAWGVNLPAH V++KGTQ ++ +
Sbjct: 1418 LSFGIGLHHAGLVESDRQLAEELFANNKIQILVATSTLAWGVNLPAHLVVVKGTQFFDAK 1477
Query: 853 KGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKL 912
+ ++ D++QMLGRAGRPQ+DS G I T S+ +Y ++ P+ES L
Sbjct: 1478 TEGYKDMDLTDVLQMLGRAGRPQFDSSGIARIFTQDSKKAFYKHFLHTGFPVESTLHKVL 1537
Query: 913 ADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLK----EDITLGER- 967
+ L AE+ GT+ ++A +++ +T+ + R+ +NP+ YGL + E TL +
Sbjct: 1538 DNHLGAEVSAGTIATKQDALDYLTWTFFFRRLHKNPSYYGLEISADQHNSLEAQTLAQDF 1597
Query: 968 RADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDI 1027
DLV + + L ++ + +D +G T G+I SYYY++H TI H KP
Sbjct: 1598 MIDLVDKSLSELSESSCIIFDSATGEVDPTPFGKIMSYYYLAHKTIRYLLSHAKPAPSFH 1657
Query: 1028 ELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKES----LEEPSAKINVLLQAYIS 1083
++ + EF + VR +E + A+L +P+ V + +P K +LLQAY+S
Sbjct: 1658 DVLSWMCSATEFDELPVRHNEDLINAELSRNLPLAVDPMGDLPMWDPHVKAFLLLQAYMS 1717
Query: 1084 QLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTP 1143
++ L D + + R+++A + + + G+ + L + + W P
Sbjct: 1718 RIDLPISDYVGDQTSVLDQSIRIIQASIDAMAELGYTAACRTFITLLQCIKSARWPTDHP 1777
Query: 1144 LRQFNGI 1150
L G+
Sbjct: 1778 LSILPGV 1784
Score = 62 (26.9 bits), Expect = 6.2e-197, Sum P(4) = 6.2e-197
Identities = 18/73 (24%), Positives = 37/73 (50%)
Query: 263 QDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKILA--EGDDREVENKLLYHLQFDKFS 320
+ D WLQ++ QQ + ++A++++ LA GDD E++ L + FD
Sbjct: 88 EQYDQTWLQQRCQLLASQQ-PGVELNEVAQQIIAALATDSGDD-ELQMSLAEIVGFDDLD 145
Query: 321 LIKFLLRNRLKVV 333
+ L+ +R +++
Sbjct: 146 FVIELIAHRKEIL 158
Score = 45 (20.9 bits), Expect = 6.2e-197, Sum P(4) = 6.2e-197
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 127 SGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQ 165
+G D++ ++ D + EI+ LL+P + +DQ
Sbjct: 54 AGTVDDVWDLISFDEESTSEGIYEIDDLLSPPVSEQYDQ 92
Score = 42 (19.8 bits), Expect = 6.2e-197, Sum P(4) = 6.2e-197
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 1276 PLPPQYFIRVVSDKWLGV 1293
P+P + +RV+SD + G+
Sbjct: 1954 PVPQRVNVRVISDSYPGM 1971
>CGD|CAL0003134 [details] [associations]
symbol:orf19.3980 species:5476 "Candida albicans" [GO:0042788
"polysomal ribosome" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0002181 "cytoplasmic translation" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 CGD:CAL0003134 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K01529
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 GO:GO:0008026 EMBL:AACQ01000012 EMBL:AACQ01000011
RefSeq:XP_721889.1 RefSeq:XP_722050.1 ProteinModelPortal:Q5AK41
STRING:Q5AK41 GeneID:3636313 GeneID:3636419 KEGG:cal:CaO19.11463
KEGG:cal:CaO19.3980 Uniprot:Q5AK41
Length = 1929
Score = 1800 (638.7 bits), Expect = 4.1e-192, Sum P(3) = 4.1e-192
Identities = 371/871 (42%), Positives = 551/871 (63%)
Query: 438 MANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLD-PNEK-LIKISEMPEWAQPAFKGMTQ 495
+ +K LP+G+ R + +EE+ +P ++KP +EK L+KIS++ Q FK
Sbjct: 195 ITGKKFALPQGTTRDSYATHEELVIPYPENKPNKWISEKNLVKISDLDFLCQGTFKNYKN 254
Query: 496 LNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTIL----QQLALNRNDDGS----FN 547
LN++QS VY A ++ +N+L+CAPTGAGKT+VA+LTIL Q + +DG +
Sbjct: 255 LNKMQSLVYPVAYNTNENMLVCAPTGAGKTDVALLTILHTINQFVTETVTEDGDVSVDID 314
Query: 548 HSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEK 607
+ +KIVYVAP+KAL AE+V S +L+ + VREL+GD LTRQ+I TQIIVTTPEK
Sbjct: 315 YDEFKIVYVAPLKALAAEIVEKYSKKLKWLGINVRELTGDMQLTRQEIINTQIIVTTPEK 374
Query: 608 WDIITRKS-GDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGL 666
WD++TRKS GD VK +RG V+E++VART+RQ+E+T+ IR+VGL
Sbjct: 375 WDVVTRKSTGDSELVAKVKLLIIDEVHLLHEDRGSVIETLVARTLRQVESTQSMIRVVGL 434
Query: 667 SATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVK--KPLQRFQLMNDLCY 724
SATLPNY DVA FL VN G+FYFD S+RPVPL QQ +G++ K L R + ++ + Y
Sbjct: 435 SATLPNYMDVADFLGVNRSVGMFYFDQSFRPVPLQQQILGVRGKAGSKLAR-ENIDKVSY 493
Query: 725 EKVVAVAGKH-QVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSH-TD 782
EK+ + QV++FVHSRK+T TAR A+E F ++ S E + ++
Sbjct: 494 EKLADYINQGLQVMVFVHSRKDTVNTARTFIRMAVEYGESEIFNCSEADSYEKYKREASN 553
Query: 783 MVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVI 842
+S +LK+L +GF +HHAGM R DR L E +F G ++VL TATLAWGVNLPA VI
Sbjct: 554 KNRSKELKELFVHGFGVHHAGMLRSDRNLTEKMFESGAIKVLCCTATLAWGVNLPAAVVI 613
Query: 843 IKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQL 902
+KGTQ+Y+ + G + +L D++Q+ GRAGRPQY+ +G GI+ T +L +Y+SL+ QQ
Sbjct: 614 VKGTQVYDSKAGGFVDLGISDVIQIFGRAGRPQYEKFGTGILCTTSDKLDHYVSLLTQQH 673
Query: 903 PIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDI 962
PIES+F KL D LNAEI LGTV N +EA W+GYTY+ +RM +NP YG+ + L+ED
Sbjct: 674 PIESKFGDKLIDNLNAEISLGTVTNVEEAVQWLGYTYMMVRMKQNPFAYGIDWKELQEDP 733
Query: 963 TLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKP 1022
+L RR ++V T A L ++ +D S F DLGRIAS +Y+ ++ +N+ + P
Sbjct: 734 SLTNRRREMVFTCAKRLHHLQMIIFDENSEAFTPKDLGRIASDFYLLSNSVEIFNQMMNP 793
Query: 1023 TMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDR-VPIPVKESLEEPSAKINVLLQAY 1081
+ ++ + S+S EF + R++E EL +L++ P V ++ P K N+LLQA+
Sbjct: 794 LATEADILSMISMSSEFDSIKFREEESKELKQLVEEDAPCQVAGDVDSPQGKTNILLQAF 853
Query: 1082 ISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQ 1141
+SQ ++ +L SD ++ Q++ R+ R+LF I + R W +L L+L K + KR+W+ +
Sbjct: 854 VSQAHIKDSALISDSNYVAQNSARICRSLFLIAMNRRWGKLMNIMLSLCKSIDKRIWAFE 913
Query: 1142 TPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLIL 1201
P+ QF +P +L ++ K+ + D+ ELG+L+ KMG L+K + +FP + +
Sbjct: 914 HPMTQFE-LPQPVLRNIKAKNPSMLALRDMEAGELGDLVHNFKMGSILYKLIGKFPFIDI 972
Query: 1202 AAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYI 1261
+ + PIT V++V + + PDF+WDDK HG + FW+ VE++D ILH E F+L K+ +
Sbjct: 973 ESEIFPITTNVMRVHVDLQPDFVWDDKYHGSAQFFWLTVEESDRSEILHVEKFILHKKQL 1032
Query: 1262 EEDHSLNFTVPIYEPLPPQYFIRVVSDKWLG 1292
H ++F +P+ +PLP Q +RVVSD W+G
Sbjct: 1033 HSPHEMDFMIPLSDPLPAQVVVRVVSDSWIG 1063
Score = 858 (307.1 bits), Expect = 2.3e-84, Sum P(3) = 2.3e-84
Identities = 236/719 (32%), Positives = 374/719 (52%)
Query: 456 GYEEIHVPAMKH--KPLDPNEK--LIKISEMPEWA--QPAFKGMTQ-----LNRVQSRVY 504
G E +H + +H +P + K L+ + +P A P + + N +Q+ V+
Sbjct: 1063 GSETVHAVSFQHLIRPSNETIKTDLLHLQPLPVTALHNPDVEQIYSSKFKYFNPMQTMVF 1122
Query: 505 KSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564
S ++ ++ + +PTG+GKT VA L I A N F S K+VY+APMKALV
Sbjct: 1123 HSLYNTNSSVFVGSPTGSGKTVVAELAIWH--AFNE-----FPSS--KVVYIAPMKALVR 1173
Query: 565 EVVGNLSNRL-QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQL 623
E V + R+ + ++ EL+GD T Q+++E II+TTPEK+D I+R R + Q
Sbjct: 1174 ERVDDWRERICKNTSHRLVELTGDSLPTIQEVKEADIIITTPEKFDGISRNWQTRKFVQQ 1233
Query: 624 VKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN 683
V +RGP+LE IV+R TK+ IRL+G+S + N D+A +L V
Sbjct: 1234 VSLVIMDEIHLLASDRGPILEMIVSRMNYISSQTKKPIRLLGMSTAVSNAFDMAGWLGV- 1292
Query: 684 LEKGLFYFDNSYRPVPLSQQYI-GIQVKK---PLQRFQLMNDLCYEKVVAVAGKHQVLIF 739
+ GLF F S RPVPL Q YI G PL + MN + + + VLIF
Sbjct: 1293 -KNGLFNFPQSVRPVPL-QMYIDGFPENLAFCPLMK--TMNKPAFMAIKQHSPNKPVLIF 1348
Query: 740 VHSRKETAKTAR-AIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFA 798
V SR++T TA I +E++ RFLK +S + LQ + VK + L+ L +G
Sbjct: 1349 VASRRQTRLTALDLIHLCGMESNPR-RFLK---ISDDELQDILENVKDDTLRLSLQFGMG 1404
Query: 799 IHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTE 858
+HHAG+ DRQ+ LF G +Q+L++T+TLAWGVNLPAH VIIKGTQ ++ + A+ +
Sbjct: 1405 LHHAGLVESDRQISHKLFEQGKIQILIATSTLAWGVNLPAHLVIIKGTQFFDAKIEAYRD 1464
Query: 859 LSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNA 918
+ DI+QM+GRAGRP YD+ G I+ T S+ +Y +N P+ES L + + A
Sbjct: 1465 MDLTDILQMMGRAGRPAYDTSGIAIVYTKESKKVFYKHFLNLGFPVESSLHKVLDNHIGA 1524
Query: 919 EIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDIT---LGERRADLVHTA 975
EI GT+ +EA +++ +T+LY R NP YG+ EDI+ + + A L+ +
Sbjct: 1525 EISAGTITTRQEAMDFLTWTFLYRRAHNNPTYYGI------EDISQYGISQYLAKLIDST 1578
Query: 976 ATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSL 1035
L + V Y S T I+SYYY+SH T+ + ++ P + R+
Sbjct: 1579 IENLVESKCV-YTGGSDELHATPFLEISSYYYLSHLTMRNFVNNVTPDFEFRDCLRVLCQ 1637
Query: 1036 SEEFKYVTVRQDEKMELAKLLDRVPIPVK----ESLEEPSAKINVLLQAYISQLKLEGLS 1091
+ E+ + R E++ ++ + P + E + +P K +L+QAY+S+++L
Sbjct: 1638 ATEYNELATRHGEELINMEMSQAMRYPAEDLNCEFIWDPHVKAYLLIQAYMSRVELPIAD 1697
Query: 1092 LTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGI 1150
D + + A R+L+A + + G+ ++ + L + + +R W P+ G+
Sbjct: 1698 YAQDTISVLDQALRILQAYIDAAAELGYFKVVMSFIQLMQCIKQRYWYDDDPVSALPGL 1756
Score = 58 (25.5 bits), Expect = 4.1e-192, Sum P(3) = 4.1e-192
Identities = 22/76 (28%), Positives = 38/76 (50%)
Query: 273 KISQAFDQQIDPQQCQKLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKV 332
KIS+ + ++ + L + +L L D E+++ L L FD+F LI +++N K
Sbjct: 86 KISK--QRGLEKSEIYTLVKSLL--LQSPTDEELQSSLFDILGFDEFDLISKIIQN--KR 139
Query: 333 VWCTRLARA-QDQEER 347
+ TR + EER
Sbjct: 140 AFATRESSGLMSSEER 155
Score = 42 (19.8 bits), Expect = 4.1e-192, Sum P(3) = 4.1e-192
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 142 VKNPDKK-KEIEKLLNPIPNHVFDQLVSIG 170
+ N + K I+K+LN N D L IG
Sbjct: 38 IDNENAKITPIDKILNKFANVTIDSLKHIG 67
>UNIPROTKB|G4N5J1 [details] [associations]
symbol:MGG_06124 "Activating signal cointegrator 1 complex
subunit 3" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0043581 "mycelium development" evidence=IEP]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 GO:GO:0005524 EMBL:CM001233 GO:GO:0003676
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K01529 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 GO:GO:0008026 RefSeq:XP_003711991.1
ProteinModelPortal:G4N5J1 EnsemblFungi:MGG_06124T0 GeneID:2684274
KEGG:mgr:MGG_06124 Uniprot:G4N5J1
Length = 1998
Score = 1847 (655.2 bits), Expect = 1.4e-190, P = 1.4e-190
Identities = 387/882 (43%), Positives = 558/882 (63%)
Query: 430 AFQQGG-LFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQP 488
AF G L A ++ LP GSQR YEE +PA K L P + L+KIS++ +
Sbjct: 225 AFSAGNSLNHAGKRYALPVGSQRLEFPKYEEYFIPAGKPGGLWPGQTLVKISDLDGLCRR 284
Query: 489 AFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTIL----QQLALN--RND 542
FKG LNR+QS VY A + +N+L+CAPTGAGKT+ A+LTIL Q + N +N
Sbjct: 285 TFKGYQTLNRMQSLVYPIAYKTNENMLVCAPTGAGKTDAAMLTILHAIGQYVTPNPLQNT 344
Query: 543 ---DGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQ 599
D + + ++KIVYVAPMKAL AE+ L RL ++ RE +GD LT+ +I +TQ
Sbjct: 345 TATDFAVHTEDFKIVYVAPMKALAAEITEKLGKRLAWLGIRCREYTGDMHLTKTEIVQTQ 404
Query: 600 IIVTTPEKWDIITRK-SGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTK 658
IIVTTPEKWD++TRK +GD Q V+ RG VLES+VART RQ+E+T+
Sbjct: 405 IIVTTPEKWDVVTRKGTGDTELVQKVRLLIIDEVHMLHDERGAVLESLVARTERQVESTQ 464
Query: 659 EHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL-QRFQ 717
IR+VGLSATLPN+ DVA FL+VN +GLFYFD S+RPVPL Q +IG++ K Q +
Sbjct: 465 SLIRIVGLSATLPNFIDVADFLKVNRMQGLFYFDASFRPVPLEQHFIGVKGKAGTKQSRE 524
Query: 718 LMNDLCYEKVVAVAGK-HQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREI 776
++++ ++KV + K HQV++FVHSR++T +TA+ + + A++ L F + S+ +
Sbjct: 525 NLDEVAFDKVREMLEKDHQVMVFVHSRRDTLQTAKMLHERAVDQACLDLF--DPSMHPKY 582
Query: 777 LQSHTDM--VKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGV 834
+ DM K+ +L+DL+P G IHHAGMTR DR L+E LF +G ++VL TATLAWGV
Sbjct: 583 DAAIRDMKTCKARELRDLVPKGMGIHHAGMTRSDRNLMERLFAEGVLKVLCCTATLAWGV 642
Query: 835 NLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYY 894
NLPA V+IKGTQ+Y+ ++G + +L LD++Q+ GRAGRPQ++ G G+I T +L +Y
Sbjct: 643 NLPAAAVVIKGTQVYSAQEGKFVDLGILDVLQIFGRAGRPQFEDTGIGMICTTADKLSHY 702
Query: 895 LSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLA 954
L+ + QLPIES+F SKL D LNAEI LGTV + EA WIGY+YLY+RM +NP YG++
Sbjct: 703 LTAVTDQLPIESRFSSKLVDNLNAEIALGTVTSIPEAVQWIGYSYLYVRMRKNPMAYGIS 762
Query: 955 PEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTIS 1014
+ED L +RR L AA L +V ++ + + D+GRIAS YYI H +I
Sbjct: 763 WAEFEEDPELVQRRRTLAIQAARTLQECQMVIFNETTEELRSKDIGRIASQYYILHTSIQ 822
Query: 1015 TYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDR---VPIPVKESLEEPS 1071
+N + P + ++ ++ ++S EF + R E EL ++ D VP V ++ P
Sbjct: 823 VFNTMMSPYATEADVLKMIAMSGEFDNIQSRDSEAKELTRMKDSRAAVPCDVAGGIDTPQ 882
Query: 1072 AKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSK 1131
AK N+LLQAYIS+++ E +L +D+ ++ Q AGR+ RA+F I L R W L L+K
Sbjct: 883 AKTNILLQAYISKVQPEDFALGNDLNYVAQQAGRICRAIFMIALNRRWGHQCLVLLTLAK 942
Query: 1132 MVTKRMWSVQTPLRQFNGIPNEILMKLEKKD-FAWERYYDLSPQELGELIRFPKMGRTLH 1190
+ KR+W Q PL QF +P IL +L+ KD + E D+ E+G L+ G L
Sbjct: 943 SIEKRVWPFQHPLHQFE-LPKPILNQLDAKDSLSVEAMRDMEAAEIGALVHNHGAGTKLA 1001
Query: 1191 KFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILH 1250
+ FP + + A + P+ R VL++ L ITPDF W+D++HG E +++ V++++ I H
Sbjct: 1002 NMISNFPTVSVEAEIAPLNRDVLRIRLFITPDFRWNDRLHGTSESYYIWVDNSETSEIYH 1061
Query: 1251 HEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLG 1292
HE+F+L ++ + +DH LNFT+P+ +PLP Q ++R VSD+WLG
Sbjct: 1062 HEFFILSRRKLYDDHELNFTIPLSDPLPTQIYVRAVSDRWLG 1103
Score = 871 (311.7 bits), Expect = 1.4e-84, P = 1.4e-84
Identities = 239/740 (32%), Positives = 380/740 (51%)
Query: 497 NRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYV 556
N +Q++++ + + N+LL +PTG+GKT A L + R GS K+VY+
Sbjct: 1155 NPMQTQIFHTLYHTPANVLLGSPTGSGKTVAAELAMWWAF---RERPGS------KVVYI 1205
Query: 557 APMKALVAEVVGNLSNRL-QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS 615
APMKALV E V + RL Q +K+ EL+GD T + I++ +I+TTPEKWD I+R
Sbjct: 1206 APMKALVRERVKDWGARLAQPMGLKLVELTGDNTPDTRTIKDADVIITTPEKWDGISRSW 1265
Query: 616 GDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYED 675
R Y + V +RGP+LE IV+R +TK +RL+G+S N D
Sbjct: 1266 QTRGYVRQVSLVIIDEIHLLAGDRGPILEIIVSRMNYIAASTKNSVRLLGMSTACANATD 1325
Query: 676 VALFLRVNLEKGLFYFDNSYRPVPLSQQYIGI-QVKKPLQRFQLMNDLCYEKVVAVAGKH 734
+ +L V ++GLF F +S RPVPL G +V+ Q MN + V +
Sbjct: 1326 LGNWLGV--KEGLFNFRHSVRPVPLELYIDGFPEVRGFCPLMQSMNRPTFLAVKNHSPTK 1383
Query: 735 QVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLP 794
V++FV SR++T TA+ + + D RFL D + LQ + VK + LK+ +
Sbjct: 1384 PVIVFVPSRRQTRLTAKDLINMCGMEDNPRRFLNMDE---DDLQLNLTRVKDDALKEAIS 1440
Query: 795 YGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKG 854
+G +HHAG+ DRQL E+LF + +Q+LV+T+TLAWGVNLPAH V++KGTQ Y+ +
Sbjct: 1441 FGIGLHHAGLVESDRQLAEELFLNNKIQILVATSTLAWGVNLPAHLVVVKGTQFYDAKIE 1500
Query: 855 AWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLAD 914
+ ++ D++QMLGRAGRPQ+D+ G I T S+ +Y ++ P+ES + L +
Sbjct: 1501 GYKDMDLTDVLQMLGRAGRPQFDNSGVARIFTQDSKKDFYKHFLHTGFPVESSLHTVLDN 1560
Query: 915 QLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRAD--LV 972
L AEI T+ ++A +++ +T+ + R+ +NP+ YGL V ++ ++ A+ ++
Sbjct: 1561 HLCAEISAETIITKQDALDYLTWTFFFRRLHKNPSYYGLEIPVEEQTSIAAQQAANDYII 1620
Query: 973 HTAATILDRNNLVKYDR--KSGYFQVTDLGRIASYYYISHGTISTYNEHLKP--TMGDIE 1028
+ LD K +G T LG+I SYYY+SH TI + ++ K T D+
Sbjct: 1621 SMIDSSLDELATSKCVEVYPNGDVDPTPLGKIMSYYYLSHKTIRSLVKNAKAGATFADVL 1680
Query: 1029 --LCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVK--ESLE--EPSAKINVLLQAYI 1082
+CR E+ + VR +E + +L +PI SL +P K +LLQA++
Sbjct: 1681 SWMCRAI----EYDELPVRHNEDLINIELSKALPIATDLFGSLPMWDPHVKAFLLLQAHM 1736
Query: 1083 SQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQT 1142
S++ L D + A R+++A +++ + G + + L + + W +
Sbjct: 1737 SRIPLPITDYVGDQTSVLDQAIRIIQASIDVLTELGHLSSCLEMIKLLQCIKSARWPTDS 1796
Query: 1143 PLRQFNGI-PNEILMKLEKKDFAWERYYDLSPQELGELIR---FPKMGRT-LHKFVHQFP 1197
PL G+ P + K K + L ++LG I+ P + K V P
Sbjct: 1797 PLAILPGLEPESLATKGNKGSVTLGKLASLPNKQLGSAIKELGVPASQQNKFQKAVSMLP 1856
Query: 1198 KLILAAHVQPITRTVLKVEL 1217
L + V+ IT L V L
Sbjct: 1857 DL--SVKVEDITAASLSVVL 1874
>SGD|S000003503 [details] [associations]
symbol:SLH1 "Putative RNA helicase related to Ski2p"
species:4932 "Saccharomyces cerevisiae" [GO:0051607 "defense
response to virus" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA;IGI;IMP] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0042788 "polysomal ribosome"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0002181
"cytoplasmic translation" evidence=IGI] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 SGD:S000003503 GO:GO:0005524 GO:GO:0005737
GO:GO:0006417 EMBL:BK006941 GO:GO:0003676 GO:GO:0051607
GO:GO:0002181 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K01529 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 eggNOG:COG1204 HOGENOM:HOG000157749
GeneTree:ENSGT00640000091272 GO:GO:0008026 GO:GO:0003724 KO:K02201
RefSeq:NP_011793.3 GeneID:853194 KEGG:sce:YGR277C OMA:RKPTGEG
OrthoDB:EOG4H75KM RefSeq:NP_011787.4 GeneID:853187 KEGG:sce:YGR271W
EMBL:U35242 EMBL:Z73056 PIR:S64604 DIP:DIP-5563N IntAct:P53327
MINT:MINT-516762 STRING:P53327 PaxDb:P53327 PeptideAtlas:P53327
EnsemblFungi:YGR271W CYGD:YGR271w NextBio:973332
Genevestigator:P53327 GermOnline:YGR271W Uniprot:P53327
Length = 1967
Score = 1776 (630.2 bits), Expect = 5.2e-190, Sum P(3) = 5.2e-190
Identities = 358/870 (41%), Positives = 549/870 (63%)
Query: 439 ANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPN---EKLIKISEMPEWAQPAFKGMTQ 495
A +K LP G+ R + +EEI +PA + N KL+KIS++ + + F T
Sbjct: 230 AGQKFTLPVGTTRMSYNTHEEIIIPAADQAS-NKNYLYTKLLKISDLDHFCKTVFPYET- 287
Query: 496 LNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQL----ALNRNDDGSFNHSNY 551
LN++QS VY A + +N+L+CAPTGAGKT++A+LTI+ + +N ++ + ++
Sbjct: 288 LNQIQSLVYPVAYKTNENMLICAPTGAGKTDIALLTIINTIKQFSVVNGENEIDIQYDDF 347
Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDII 611
K++YVAP+KAL AE+V S +L ++++VREL+GD LT+ +I TQ+IVTTPEKWD++
Sbjct: 348 KVIYVAPLKALAAEIVDKFSKKLAPFNIQVRELTGDMQLTKAEILATQVIVTTPEKWDVV 407
Query: 612 TRKS-GDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670
TRK+ GD VK +RG V+E++VART+RQ+E+++ IR++GLSATL
Sbjct: 408 TRKANGDNDLVSKVKLLIIDEVHLLHEDRGSVIETLVARTLRQVESSQSMIRIIGLSATL 467
Query: 671 PNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKK-PLQRFQLMNDLCYEKVVA 729
PN+ DVA FL VN + G+FYFD S+RP PL QQ +G + K Q + ++ + Y+K+
Sbjct: 468 PNFMDVADFLGVNRQIGMFYFDQSFRPKPLEQQLLGCRGKAGSRQSKENIDKVAYDKLSE 527
Query: 730 VAGK-HQVLIFVHSRKETAKTARAIRDTALENDTLGRF----LKEDSVSREILQSHTDMV 784
+ + +QV++FVHSRKET K+AR A N + F +++D SR ++++
Sbjct: 528 MIQRGYQVMVFVHSRKETVKSARNFIKLAESNHEVDLFAPDPIEKDKYSRSLVKN----- 582
Query: 785 KSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIK 844
+ D+K++ +GF IHHAGM R DR L E +F DG ++VL TATLAWGVNLPA VIIK
Sbjct: 583 RDKDMKEIFQFGFGIHHAGMARSDRNLTEKMFKDGAIKVLCCTATLAWGVNLPADCVIIK 642
Query: 845 GTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSY-GEGIIITGHSELRYYLSLMNQQLP 903
GTQ+Y+ +KG + +L D++Q+ GR GRP + S G GI+ T + L +Y+SL+ QQ P
Sbjct: 643 GTQVYDSKKGGFIDLGISDVIQIFGRGGRPGFGSANGTGILCTSNDRLDHYVSLITQQHP 702
Query: 904 IESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDIT 963
IES+F SKL D LNAEI LG+V N EA W+GYTY+++RM +NP YG+ E + D
Sbjct: 703 IESRFGSKLVDNLNAEISLGSVTNVDEAIEWLGYTYMFVRMRKNPFTYGIDWEEIANDPQ 762
Query: 964 LGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPT 1023
L ERR ++ AA L ++ +D S +F DLGR++S +Y+ + ++ +N+ P
Sbjct: 763 LYERRRKMIVVAARRLHALQMIVFDEVSMHFIAKDLGRVSSDFYLLNESVEIFNQMCDPR 822
Query: 1024 MGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDR-VPIPVKESLEEPSAKINVLLQAYI 1082
+ ++ + S+S EF + R++E EL +L D V + L+ P K NVLLQAYI
Sbjct: 823 ATEADVLSMISMSSEFDGIKFREEESKELKRLSDESVECQIGSQLDTPQGKANVLLQAYI 882
Query: 1083 SQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQT 1142
SQ ++ +L+SD ++ Q++ R+ RALF I + R W + + LN+ K + KR+W+
Sbjct: 883 SQTRIFDSALSSDSNYVAQNSVRICRALFLIGVNRRWGKFSNVMLNICKSIEKRLWAFDH 942
Query: 1143 PLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILA 1202
PL QF+ +P I+ ++ + E +L ELGEL+ K G L+K + +FPK+ +
Sbjct: 943 PLCQFD-LPENIIRRIRDTKPSMEHLLELEADELGELVHNKKAGSRLYKILSRFPKINIE 1001
Query: 1203 AHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIE 1262
A + PIT V+++ + + PDF+WD ++HG + FWV VE++D ILH E F+L ++ +
Sbjct: 1002 AEIFPITTNVMRIHIALGPDFVWDSRIHGDAQFFWVFVEESDKSQILHFEKFILNRRQLN 1061
Query: 1263 EDHSLNFTVPIYEPLPPQYFIRVVSDKWLG 1292
H ++F +P+ +PLPPQ ++VVSD W+G
Sbjct: 1062 NQHEMDFMIPLSDPLPPQVVVKVVSDTWIG 1091
Score = 813 (291.2 bits), Expect = 1.3e-78, Sum P(2) = 1.3e-78
Identities = 229/767 (29%), Positives = 378/767 (49%)
Query: 456 GYEEIHVPAMKH--KPLDPN--EKLIKISEMPEWA--QPAFKGM---TQLNRVQSRVYKS 506
G E H + +H +P + KL+K+ +P A P + + N +Q+ + +
Sbjct: 1091 GCESTHAISFQHLIRPFNETLQTKLLKLRPLPTSALQNPLIESIYPFKYFNPMQTMTFYT 1150
Query: 507 ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566
++ +N + +PTG+GKT VA L I + G KIVY+APMKALV E
Sbjct: 1151 LYNTNENAFVGSPTGSGKTIVAELAIWHAF---KTFPGK------KIVYIAPMKALVRER 1201
Query: 567 VGNLSNRLQ-MYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVK 625
V + ++ + KV EL+GD + + + I++TTPEK+D I+R R + Q V
Sbjct: 1202 VDDWRKKITPVTGDKVVELTGDSLPDPKDVHDATIVITTPEKFDGISRNWQTRKFVQDVS 1261
Query: 626 XXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLE 685
+RGP+LE IV+R TK+ +RL+G+S + N D+A +L V +
Sbjct: 1262 LIIMDEIHLLASDRGPILEMIVSRMNYISSQTKQPVRLLGMSTAVSNAYDMAGWLGVK-D 1320
Query: 686 KGLFYFDNSYRPVPLSQQYIGIQVKK---PLQRFQLMNDLCYEKVVAVAGKHQVLIFVHS 742
GL+ F +S RPVPL G PL + MN + + + LIFV S
Sbjct: 1321 HGLYNFPSSVRPVPLKMYIDGFPDNLAFCPLMK--TMNKPVFMAIKQHSPDKPALIFVAS 1378
Query: 743 RKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHA 802
R++T TA + D RFL D E LQ + V + LK L +G +HHA
Sbjct: 1379 RRQTRLTALDLIHLCGMEDNPRRFLNIDD--EEELQYYLSQVTDDTLKLSLQFGIGLHHA 1436
Query: 803 GMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPL 862
G+ + DR + LF +Q+L++T+TLAWGVNLPAH VIIKGTQ ++ + + ++
Sbjct: 1437 GLVQKDRSISHQLFQKNKIQILIATSTLAWGVNLPAHLVIIKGTQFFDAKIEGYRDMDLT 1496
Query: 863 DIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVL 922
DI+QM+GRAGRP YD+ G I+ T S+ +Y +N P+ES L D L AEI
Sbjct: 1497 DILQMMGRAGRPAYDTTGTAIVYTKESKKMFYKHFLNVGFPVESSLHKVLDDHLGAEITS 1556
Query: 923 GTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRN 982
G++ N +EA +++ +T+L+ R NP YG+ + ++ E + L+ + L +
Sbjct: 1557 GSITNKQEALDFLSWTFLFRRAHHNPTYYGIEDDTSTAGVS--EHLSSLIDSTLENLRES 1614
Query: 983 NLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYV 1042
V T I+SYYYISH TI + + E+ R SL+ E+ +
Sbjct: 1615 QCVLLHGDD--IVATPFLSISSYYYISHLTIRQLLKQIHDHATFQEVLRWLSLAVEYNEL 1672
Query: 1043 TVRQDEKMELAKLLDRVPIPVKESLEE--------PSAKINVLLQAYISQLKLEGLSLTS 1094
VR E + ++ + V+ + + P K +LLQA++S++ L
Sbjct: 1673 PVRGGEIIMNEEMSQQSRYSVESTFTDEFELPMWDPHVKTFLLLQAHLSRVDLPIADYIQ 1732
Query: 1095 DMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEI 1154
D V + + R+L+A ++ + G+ + + + + + W P+ G+
Sbjct: 1733 DTVSVLDQSLRILQAYIDVASELGYFHTVLTMIKMMQCIKQGYWYEDDPVSVLPGLQ--- 1789
Query: 1155 LMKLEKKDFAWERYYDLSPQELGE-LIRFPKMGRTLHK-FVHQFPKL 1199
L +++ F+ + + +++PQ+ + L+ ++GR +K ++ F +L
Sbjct: 1790 LRRIKDYTFSEQGFIEMTPQQKKKKLLTLEEIGRFGYKKLLNVFDQL 1836
Score = 60 (26.2 bits), Expect = 5.2e-190, Sum P(3) = 5.2e-190
Identities = 17/68 (25%), Positives = 34/68 (50%)
Query: 266 DAYWLQRKISQAFDQQIDPQQCQKLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFL 325
+A + +KI + ++ L E VL+++ + +E+E +LL L L+ L
Sbjct: 93 NAVAVYKKIGKLINEAETTLSSNVLLETVLQMVYKHQKQELEKELLDFLGTGNIDLVSLL 152
Query: 326 LRNRLKVV 333
L++R +V
Sbjct: 153 LQHRRMIV 160
Score = 44 (20.5 bits), Expect = 5.2e-190, Sum P(3) = 5.2e-190
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 1245 GEYILHHEYFMLKKQYIEEDHSLNFTVPIYEP 1276
GE I++ E + +E + F +P+++P
Sbjct: 1677 GEIIMNEEMSQQSRYSVESTFTDEFELPMWDP 1708
>WB|WBGene00013189 [details] [associations]
symbol:Y54E2A.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:FPGKHYC
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 HOGENOM:HOG000157749 GeneTree:ENSGT00640000091272
GO:GO:0008026 EMBL:AL032646 RefSeq:NP_497060.2
ProteinModelPortal:Q9XWI1 SMR:Q9XWI1 PaxDb:Q9XWI1
EnsemblMetazoa:Y54E2A.4 GeneID:190256 KEGG:cel:CELE_Y54E2A.4
UCSC:Y54E2A.4 CTD:190256 WormBase:Y54E2A.4 Uniprot:Q9XWI1
Length = 2017
Score = 1670 (592.9 bits), Expect = 8.0e-172, P = 8.0e-172
Identities = 378/1035 (36%), Positives = 595/1035 (57%)
Query: 270 LQRKISQAFDQQIDPQQCQKLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNR 329
LQ S D + + L E+ ++ GD E NK+++ ++ + + ++ + +
Sbjct: 93 LQMLCSTRSDMDLQGELIDLLGVELFELA--GDILEKRNKIVFEVKSQELAKVEHARQAK 150
Query: 330 LK-----VVWCTRLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEK 384
K + + E+R+++ +E +L ++ HA K + +K
Sbjct: 151 AKPAVPGFLQTVSVQSTSQNEKRRELRKEEKRTRRELNRVI---HAFGDEEKLELELAQK 207
Query: 385 SIREEARRLKDESASXXXXXXXXXXXXXXXXXWLGQRQLLDLDTLAFQQGGLFMANRKCD 444
I+ + R+L+ + ++ +L ++ F G+ A
Sbjct: 208 EIQRQ-RQLEIDQMKWKPSLVAGGPRIEEIYPYVFDARLQNVGHTMFDINGMKFA----- 261
Query: 445 LPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVY 504
LPEGS+R T K +E ++VP ++ + + + +M E Q FKG +LN +QS V+
Sbjct: 262 LPEGSKRDTFKTHESVYVPPSNKGDIEKIQH-VYVKDMDELGQKGFKGFEKLNVIQSIVF 320
Query: 505 KSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564
+ A + +N+L+CAPTGAGKTN+A+LTIL + ++N G ++KI+Y+APMKAL
Sbjct: 321 EQAYKTKENLLICAPTGAGKTNIAMLTILNTIHEHQNSRGDIMKDDFKIIYIAPMKALAT 380
Query: 565 EVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS-GDRTYTQL 623
E+ + RL +KV+EL+GD L+R ++ +TQ++V TPEKWD+ITRKS D + +
Sbjct: 381 EMTESFGKRLAPLGLKVKELTGDTQLSRNEVADTQMLVLTPEKWDVITRKSTSDNSLINV 440
Query: 624 VKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN 683
V+ RGPV+E++VART+RQ+E ++ IR+VGLSATLPN+ DVA FLRVN
Sbjct: 441 VRLLIIDEVHLLHDERGPVIETLVARTLRQVEMSQSGIRIVGLSATLPNFIDVARFLRVN 500
Query: 684 LEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQ-RFQLMNDLCYEKVVAVAGK-HQVLIFVH 741
KGLF+FD +RPVPL+Q++IG + + LM+++CY++VV + HQVL+FVH
Sbjct: 501 PYKGLFFFDGRFRPVPLTQKFIGTRKAGNFRDNLTLMDNVCYDEVVDFVKRGHQVLVFVH 560
Query: 742 SRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDM-VKSN--DLKDLLPYGFA 798
+R TAK A A + FL +D S + +Q+ + + N + L G
Sbjct: 561 TRNGTAKLGEAFCARASVLGQMDLFLPKDRASSKYIQADKAINICRNRAQISPLFQRGMG 620
Query: 799 IHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTE 858
IHHAG+ R DR L+E F +GHV VL TATLAWGVNLPAH V+IKGT +++ EKG +T+
Sbjct: 621 IHHAGLCRQDRILMERCFAEGHVSVLFCTATLAWGVNLPAHAVVIKGTDVFDAEKGVFTD 680
Query: 859 LSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNA 918
L LD+ Q+ GRAGRPQ+++ G GIIIT ++ YL+++ Q PIESQF ++L D LNA
Sbjct: 681 LGVLDVQQIFGRAGRPQFENEGHGIIITTRDKIDKYLTMLVHQNPIESQFYARLHDNLNA 740
Query: 919 EIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATI 978
E+ LGTV E W+ YTY+Y R L+NP YG+A ++ D L + +++ AA
Sbjct: 741 EVALGTVSTVDEGVEWLTYTYMYTRALKNPMAYGIAYNAIERDPNLRDHFGNVIREAAMQ 800
Query: 979 LDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLK----PT-----MGDIEL 1029
LD+N ++++D + Y TDLGRIAS +Y+ + TI NE K P M D +
Sbjct: 801 LDQNKMIRFDMATEYLNSTDLGRIASNFYVKYETIQLLNEAEKGVGLPVTFTSFMPDDMV 860
Query: 1030 CRLFSLSEEFKYVTVRQDEKMELAKLLDR-VPIPVKES-LEEPSAKINVLLQAYISQLKL 1087
L S+S EF + R++E +L +L+ + V+ L + K+NVLLQ+ IS+
Sbjct: 861 IGLISMSTEFANLKCREEEIGDLEELMSYGCMMNVRGGGLASVAGKVNVLLQSLISRTST 920
Query: 1088 EGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQF 1147
+L S+ +++ Q+AGRL RA+FE+VLK GW+Q A L ++K V K+MW Q LRQF
Sbjct: 921 RNSALMSEQLYVQQNAGRLCRAMFEMVLKNGWSQAANAFLGIAKCVEKQMWMNQCALRQF 980
Query: 1148 N---GIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAH 1204
IP + K+E+K +LS ++LG + F G L+ ++ P++ + A
Sbjct: 981 IQIINIPITWIEKIERKKARESDLLELSAKDLGYM--FSCDGDRLYTYLRYLPRMDVQAK 1038
Query: 1205 VQPITRTVLKVELTITPDFLWDDKVHGYV--EPFWVIVEDNDGEYILHHEYFMLKKQYI- 1261
+PIT T+++VE+T+TP F+W+D++HG + F++++E+ + I+H E + K +
Sbjct: 1039 FKPITYTIVQVEVTLTPTFIWNDQIHGKSGQQSFYLVLENLNENLIIHQERIGIGKMKVN 1098
Query: 1262 -EEDHSLNFTVPIYE 1275
+E +L FT+PI +
Sbjct: 1099 RQETQNLVFTIPIVD 1113
Score = 826 (295.8 bits), Expect = 4.5e-79, P = 4.5e-79
Identities = 204/653 (31%), Positives = 338/653 (51%)
Query: 497 NRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYV 556
N +Q++V+ + + L+ APTG+GKT A L + + L +H K+VY+
Sbjct: 1181 NPIQAQVFFCLYKTDKSALIGAPTGSGKTLCAELAMFRLLQ---------DHPGMKVVYI 1231
Query: 557 APMKALVAEVVGNLSNRLQM-YDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS 615
AP+K+LV E V + + + +V E+SGD T +++ + I++TTPEKWD I+R
Sbjct: 1232 APLKSLVRERVDDWKKKFEDGMGYRVVEVSGDVTPDPEELAASSILITTPEKWDGISRSW 1291
Query: 616 GDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVART---VRQIETTKEHIRLVGLSATLPN 672
R Y + V +RG VLE+IV+R R+ T+E +RL+GLS L N
Sbjct: 1292 ATREYVRRVGLIVLDEVHLLGVDRGAVLEAIVSRLKMITRRSHVTEEPVRLLGLSTALAN 1351
Query: 673 YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAG 732
DVA +L + ++ + F S RPVP+S G + R LMN Y+ ++ +
Sbjct: 1352 AGDVAEWLGIP-DEACYNFRPSVRPVPISVHIQGFPGQHYCPRMGLMNKPAYKAILTYSP 1410
Query: 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDL 792
+ VLIFV SR++T TA A + + + ++L D + E L + +K +LK
Sbjct: 1411 RKPVLIFVSSRRQTRLTALAFVNLLIADHNPKQWLNMDMLELEDLMA---AIKDENLKLT 1467
Query: 793 LPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPE 852
LP+G +HHAG++ +R +VE LF + +QVL++TATLAWG+N PAH VI+KGT+ ++ +
Sbjct: 1468 LPFGIGMHHAGLSAHERAIVEQLFIEKKIQVLIATATLAWGINCPAHLVIVKGTEYFDGK 1527
Query: 853 KGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKL 912
KG + + D++QM+GRAGRPQ+D +I ++ +Y + + P+ES + L
Sbjct: 1528 KGKYVDFPVTDVLQMMGRAGRPQFDDSAVAVIYVQDAKKTFYKKFLYEPFPVESSLLPVL 1587
Query: 913 ADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLV 972
+ +NAEI GT+ + + ++ TYLY R+ NP YGL + E+ L + +V
Sbjct: 1588 PNHVNAEISAGTIDSKQAIVEYLSKTYLYRRLFANPNYYGLEED--SEEAML-KFITKIV 1644
Query: 973 HTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRL 1032
+ L + + D + + T GRIAS YY+ H T+ + L + ++
Sbjct: 1645 DDSVAELLASECIHVDSEQDVIKPTPCGRIASVYYLQHETVRFLVKSLHSGCSVENMLKI 1704
Query: 1033 FSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSA-KINVLLQAYISQLKLEGLS 1091
+ E+ + VR +E + +L ++ I S+ SA K ++L QA+ + L
Sbjct: 1705 LTDVPEYAEIPVRHNEDLINTELQKKLRIRFSTSVMGTSACKAHLLFQAHFMRTVLP-TD 1763
Query: 1092 LTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPL 1144
+D+ + R+L+A+ E+ + W + L +M W PL
Sbjct: 1764 YRTDLKSVLDQCIRILQAMREMARLKNWLSATMNIILLQQMCHSARWHDDHPL 1816
>UNIPROTKB|H9L1I7 [details] [associations]
symbol:SNRNP200 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
GO:GO:0008026 EMBL:AADN02044729 EMBL:AADN02044730
Ensembl:ENSGALT00000035545 OMA:PRKERIM Uniprot:H9L1I7
Length = 771
Score = 1330 (473.2 bits), Expect = 4.0e-164, Sum P(2) = 4.0e-164
Identities = 269/528 (50%), Positives = 366/528 (69%)
Query: 260 LNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKIL-AEGDDREVENKLLYHLQFDK 318
L+ +DIDA+WLQR++S+ +D I QK A+EVL+IL DDRE EN+L+ L F+
Sbjct: 258 LHPRDIDAFWLQRQLSRFYDDAI---VSQKKADEVLEILKTASDDRECENQLVLLLGFNT 314
Query: 319 FSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKER 378
F IK L ++R+ +++CT LA AQ + E+++I +M P+L+ L QLH T KE
Sbjct: 315 FDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEA-DPELSKFLYQLHETE---KED 370
Query: 379 QKNLEKSIREEARRLKDESASXXXXXXXXXXXXXXXXXWLGQRQLLDLDTLAFQQGGLFM 438
E+S RE R+ + ++ L RQ+LDL+ L F QG FM
Sbjct: 371 LIREERSRRERVRQSRMDTDLETMDLDQGGEA-------LAPRQVLDLEDLVFAQGSHFM 423
Query: 439 ANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNR 498
AN++C LP+GS R KGYEE+HVPA+K KP E+L+ + ++P++AQ F+G LNR
Sbjct: 424 ANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLVSVEKLPKYAQAGFEGFKTLNR 483
Query: 499 VQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558
+QS++Y++AL S +N+LLCAPTGAGKTNVA++ +L+++ + N DG+ N +KI+Y+AP
Sbjct: 484 IQSKLYRAALESDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDEFKIIYIAP 543
Query: 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDR 618
M++LV E+VG+ RL Y + V EL+GD L +++I TQIIV TPEKWDIITRK G+R
Sbjct: 544 MRSLVQEMVGSFGKRLATYGINVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGER 603
Query: 619 TYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVAL 678
TYTQLV+ +RGPVLES+VAR +R IE T+E +RLVGLSATLPNYEDVA
Sbjct: 604 TYTQLVRLVILDEIHLLHDDRGPVLESLVARAIRNIEMTQEDVRLVGLSATLPNYEDVAT 663
Query: 679 FLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLI 738
FLRV+ KGLFYFDNS+RPVPL Q Y+GI KK ++RFQ+MN++ YEK++ AGK+QVL+
Sbjct: 664 FLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLV 723
Query: 739 FVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKS 786
FVHSRKET KTARAIRD LE DTLG FL+E S S E+L++ + K+
Sbjct: 724 FVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKN 771
Score = 289 (106.8 bits), Expect = 4.0e-164, Sum P(2) = 4.0e-164
Identities = 76/182 (41%), Positives = 101/182 (55%)
Query: 9 AEAHARFKQYEYRANSSLVLTTDSRPRDT---HEPTGEPESLWGKIDPRSFGDRAFRGRP 65
A+ AR QYEY+ANS+LVL D D EPTGE SL GK++ GD+A R +P
Sbjct: 2 ADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTKP 61
Query: 66 PXXXXXXXXXXXXXXXRDPDADAAAA----SEGT-------YQPKTKETRAAYEAMLSVI 114
R D + SEG Y+PKTK TR YE +LS I
Sbjct: 62 QMQEERRAKRRKRDEDRH-DINTMKGYTLLSEGIDEMVGIIYKPKTKVTRETYEVLLSFI 120
Query: 115 QQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLVSIGKLIT 174
Q LG QP +I+ GAADE+LAVLKN+ +++ +++KEI+ LL + + LV++GK IT
Sbjct: 121 QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKIT 180
Query: 175 DY 176
DY
Sbjct: 181 DY 182
>GENEDB_PFALCIPARUM|PF14_0370 [details] [associations]
symbol:PF14_0370 "RNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014187
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00973 GO:GO:0004004 KO:K01509
RefSeq:XP_001348544.1 ProteinModelPortal:Q8IL78
EnsemblProtists:PF14_0370:mRNA GeneID:811952 KEGG:pfa:PF14_0370
EuPathDB:PlasmoDB:PF3D7_1439100 HOGENOM:HOG000282165 OMA:GVAIHHA
ProtClustDB:CLSZ2433245 Uniprot:Q8IL78
Length = 2472
Score = 917 (327.9 bits), Expect = 1.0e-116, Sum P(3) = 1.0e-116
Identities = 213/629 (33%), Positives = 353/629 (56%)
Query: 544 GSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVT 603
G N +KI+Y+APMK+LV E+ +L+++++ V E + + +L+ +++E+ IIVT
Sbjct: 498 GYINSKEFKIIYIAPMKSLVFEITNLFRKKLKIFNLNVCEYTKEYSLSSKELEQVHIIVT 557
Query: 604 TPEKWDIITRKSG------DRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETT 657
PEK DI+ R S D + + +K +RG V+E+IV+R ++ ET+
Sbjct: 558 VPEKLDILLRNSSYSTTVSDESLIKYIKCLILDEVHLLNTDRGDVIETIVSRFLQYSETS 617
Query: 658 KEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQ 717
+ R++ +SATLPNY+DV FL+V + +YF+ YR + L + GI + + +
Sbjct: 618 QSIRRIMAMSATLPNYKDVRDFLKVENDM-CYYFNEKYRSIQLDKTLYGIHEENNNKLYI 676
Query: 718 LMNDLCYEKVVAVAGKH-QVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREI 776
N Y +++ K Q +IFV SR ET KT + + AL+N+ + F+ +I
Sbjct: 677 AKNIYTYNEIINSLKKDKQCIIFVCSRNETNKTIEFLINHALKNNEIEYFVNNVYTDNDI 736
Query: 777 LQSHTDMVKSNDL--KDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGV 834
+ + KSN+L K YG IHHAGM+R D+ LVE LF VL T+TLAWGV
Sbjct: 737 KKK---IKKSNNLYIKQFYEYGCTIHHAGMSRSDKILVESLFKKKVFNVLCCTSTLAWGV 793
Query: 835 NLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYY 894
NLP HTVIIKGT ++ E G ++ LDI Q+ GR GRPQY+S+G I+IT ++L Y
Sbjct: 794 NLPVHTVIIKGTNYFSSESGKLEDMDILDINQIFGRCGRPQYESHGHAILITERTKLYKY 853
Query: 895 LSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLA 954
+ L+ IES F+ + + LNAEI +GT++N ++ W+ YTYL+IRM +NP LY +
Sbjct: 854 IKLLTNNTVIESNFLKNIENHLNAEISIGTIKNIEDGIKWLEYTYLFIRMKKNPYLYDVD 913
Query: 955 PEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTIS 1014
+ D+ L +R D++ A L N LV+ + F T G+IA+ YY+ + TI
Sbjct: 914 ---INNDLNLYNKRKDIIMKAIQNLSENKLVRRVLLTNDFIGTFYGQIAAKYYVDYKTIG 970
Query: 1015 TYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEP-SAK 1073
+ E+++ IE+ ++ S ++EF+ + +R ++ + L D+ I KE +E +
Sbjct: 971 MFAENVQNN-NYIEIIQVISKAKEFENIQIRNEDMKDFLYLKDKCDI--KEEYDESKNMT 1027
Query: 1074 INVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLK--RGWAQLAEKALNLSK 1131
+ +L++ Y+ +L++ S+ ++ +I Q+ R+L A ++I L + + L NL
Sbjct: 1028 LRILIEVYLRRLQINNFSIICEINYIVQNIIRILYAYYDICLNILKNISNLIMNTHNLIV 1087
Query: 1132 MVTKRMWSVQTPLRQFNGIPNEILMKLEK 1160
+ +R+ + + + NE+L K +K
Sbjct: 1088 AILRRL-PINCGIFRHFCYKNEMLEKNKK 1115
Score = 361 (132.1 bits), Expect = 4.5e-60, Sum P(3) = 4.5e-60
Identities = 77/256 (30%), Positives = 141/256 (55%)
Query: 771 SVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATL 830
+V+ + Q++ +++++ LK++L YG IHHAG+ D+ +VE LF + +Q+L+ T+TL
Sbjct: 1789 NVANILFQNYLNLIENEHLKEILKYGIGIHHAGLNENDKTIVEYLFLNKIIQILICTSTL 1848
Query: 831 AWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE 890
AWG+NLPA+ VIIKG + Y+ + + ++ D++QM+GRAGRPQ+D I++
Sbjct: 1849 AWGINLPAYLVIIKGNEFYDAKTKKYKDIPYTDLLQMIGRAGRPQFDDKALAILLVQEKR 1908
Query: 891 LRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPAL 950
+ + + IES + + +NAEI + N ++ N++ +Y + R+ NP+
Sbjct: 1909 KNAIKNFLYHPMNIESNIMENFNEHINAEICSNVINNKEDIFNYLTKSYYFKRLFSNPSY 1968
Query: 951 YGLAPEVLK--EDITLG--------ERRADLVHTAATILDRNNLVKYDRKS---GYFQVT 997
Y + ++ E+ L + D++ L +N ++ +++ Y+ T
Sbjct: 1969 YIKEVQYVQFFENSKLSTHAKKIIYDHLNDVIENGIKFLVQNKCLEVVQENYVLNYY-AT 2027
Query: 998 DLGRIASYYYISHGTI 1013
LG IAS YYI T+
Sbjct: 2028 PLGHIASMYYIKCETV 2043
Score = 344 (126.2 bits), Expect = 4.5e-60, Sum P(3) = 4.5e-60
Identities = 102/349 (29%), Positives = 172/349 (49%)
Query: 469 PLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVA 528
PL P + +P + + F N +Q++++ + + +NILL APTG+GKT +
Sbjct: 1348 PLTPLST--NVLNIPNYIK--FFSFKYFNPIQTQMFHATFHTDENILLGAPTGSGKTVIG 1403
Query: 529 VLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVRELSGD 587
L IL+ L +G K VY+ PMKA+V E + ++ + +++ V EL+GD
Sbjct: 1404 ELCILRNLL---RCEGQ------KSVYICPMKAIVNERYKSWKSKFKSLFNKNVIELTGD 1454
Query: 588 QTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXX-NRGPVLESI 646
+ ++ I E+ II+ TPEK D+ITR ++ + + + NRG V+E +
Sbjct: 1455 KNENKENIAESNIIICTPEKLDVITRNWKNKKFVKNINLIIFDEIHLLGQENRGGVIEIL 1514
Query: 647 VARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIG 706
V R + IRL+GL+ + + +D+ L+L V E LF F +S R VP +G
Sbjct: 1515 VNRFKNMQNELNKKIRLIGLTTVITSVDDLILWLDVK-ENYLFNFPSSCRIVPCKTHILG 1573
Query: 707 IQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRF 766
K R +MN ++ + A VLIFV SR++T TA I L + L F
Sbjct: 1574 FTQKAYCNRMSVMNKNVFDAINQYAQTKNVLIFVSSRRQTRLTAYDIISLNLSSHNLN-F 1632
Query: 767 LKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDL 815
L +++ + ++H D + + K+ I++ M GD + E++
Sbjct: 1633 LHVENLLND--KNHIDFLLNTQKKNKKN---KINNKDMNEGDNNIAENI 1676
Score = 160 (61.4 bits), Expect = 1.0e-116, Sum P(3) = 1.0e-116
Identities = 35/134 (26%), Positives = 71/134 (52%)
Query: 1158 LEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVEL 1217
LEKK+ +E LS +EL +R + + + P L + ++QPIT+T++K+ L
Sbjct: 1187 LEKKNLTYESIEHLSKKELLFFMRNEIYTNQILYYRNIIPNLDIDGYIQPITQTIMKINL 1246
Query: 1218 TIT-PDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEP 1276
+ + +W D+ + +E F + + + IL+ + F + K+ ++ H ++F P+
Sbjct: 1247 NVKLTNTIWSDQWNDIIENFHIFLLNTLNNDILYFQKFSIHKKDRKKIHDISFEFPLSNQ 1306
Query: 1277 LPPQYFIRVVSDKW 1290
+PPQ ++ +S W
Sbjct: 1307 IPPQITVQFLSMNW 1320
Score = 152 (58.6 bits), Expect = 1.0e-116, Sum P(3) = 1.0e-116
Identities = 30/65 (46%), Positives = 44/65 (67%)
Query: 474 EKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTIL 533
++L+ ++ +P W + F N VQS+V+ SA S N+L+CAPTG GKTN+A+L IL
Sbjct: 319 KELVSVNVLPFWHKYIFD-FEYFNYVQSKVFNSAFRSNKNLLVCAPTGCGKTNIALLVIL 377
Query: 534 QQLAL 538
QQ+ L
Sbjct: 378 QQIIL 382
Score = 71 (30.1 bits), Expect = 4.5e-60, Sum P(3) = 4.5e-60
Identities = 24/114 (21%), Positives = 55/114 (48%)
Query: 1010 HGTISTYNEHLKP---TMGD--IELCRLFSL---SEEFKYVTVRQDEKMELAKLLDRVPI 1061
+G I N++++ T+ + +E +F L ++EF + +R +E KL +++P+
Sbjct: 2125 NGDIDKLNDNMQTDFCTLKNDSLEFYDIFELVVQAKEFDDIPLRHNEDKYNVKLRNQIPL 2184
Query: 1062 PVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVL 1115
+ ++ P+ K +LL + + E + D+ + R++ A +I L
Sbjct: 2185 DIDMNM--PNVKTYLLLLSRFYECTYETVDYHIDLKLVMDQIARVINAFIDICL 2236
Score = 52 (23.4 bits), Expect = 3.3e-106, Sum P(3) = 3.3e-106
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 538 LNRNDDGSFNHSNYKIVYVAPMKA-LVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIE 596
+N D+ NHSNY Y+ K + ++ N N L + + + TLTR+ +E
Sbjct: 134 INNKDNSIINHSNYNEGYIIINKNNTMKKIYINEINELLIEIIYI-------TLTRENLE 186
Query: 597 ETQI 600
+ +
Sbjct: 187 NSLV 190
Score = 42 (19.8 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 22/99 (22%), Positives = 42/99 (42%)
Query: 732 GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHT---DMVKSND 788
G H LI ++ E + T + N +LKE +V+ IL+ + ++
Sbjct: 1146 GVH--LIDINEENEYSNTYNNYSNNNRRNQNYTVYLKEAAVN--ILEKKNLTYESIEHLS 1201
Query: 789 LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVST 827
K+LL + + R ++ +L DG++Q + T
Sbjct: 1202 KKELLFFMRNEIYTNQILYYRNIIPNLDIDGYIQPITQT 1240
Score = 39 (18.8 bits), Expect = 2.2e-06, Sum P(3) = 2.2e-06
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 600 IIVTTPEKWDIITRKSGDRTYTQLVK 625
+I+ E +D T+K D YT L++
Sbjct: 1859 VIIKGNEFYDAKTKKYKDIPYTDLLQ 1884
Score = 38 (18.4 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 513 NILLCAPTGAGKTNVAVLTIL 533
N+L C T A N+ V T++
Sbjct: 781 NVLCCTSTLAWGVNLPVHTVI 801
Score = 37 (18.1 bits), Expect = 2.2e-24, Sum P(2) = 2.2e-24
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 1064 KESLEEPSAKINVLLQAYISQLKLEGL 1090
K S EE N+L Q Y++ ++ E L
Sbjct: 1781 KLSEEERKNVANILFQNYLNLIENEHL 1807
>UNIPROTKB|Q8IL78 [details] [associations]
symbol:PF14_0370 "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00973 GO:GO:0004004
KO:K01509 RefSeq:XP_001348544.1 ProteinModelPortal:Q8IL78
EnsemblProtists:PF14_0370:mRNA GeneID:811952 KEGG:pfa:PF14_0370
EuPathDB:PlasmoDB:PF3D7_1439100 HOGENOM:HOG000282165 OMA:GVAIHHA
ProtClustDB:CLSZ2433245 Uniprot:Q8IL78
Length = 2472
Score = 917 (327.9 bits), Expect = 1.0e-116, Sum P(3) = 1.0e-116
Identities = 213/629 (33%), Positives = 353/629 (56%)
Query: 544 GSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVT 603
G N +KI+Y+APMK+LV E+ +L+++++ V E + + +L+ +++E+ IIVT
Sbjct: 498 GYINSKEFKIIYIAPMKSLVFEITNLFRKKLKIFNLNVCEYTKEYSLSSKELEQVHIIVT 557
Query: 604 TPEKWDIITRKSG------DRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETT 657
PEK DI+ R S D + + +K +RG V+E+IV+R ++ ET+
Sbjct: 558 VPEKLDILLRNSSYSTTVSDESLIKYIKCLILDEVHLLNTDRGDVIETIVSRFLQYSETS 617
Query: 658 KEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQ 717
+ R++ +SATLPNY+DV FL+V + +YF+ YR + L + GI + + +
Sbjct: 618 QSIRRIMAMSATLPNYKDVRDFLKVENDM-CYYFNEKYRSIQLDKTLYGIHEENNNKLYI 676
Query: 718 LMNDLCYEKVVAVAGKH-QVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREI 776
N Y +++ K Q +IFV SR ET KT + + AL+N+ + F+ +I
Sbjct: 677 AKNIYTYNEIINSLKKDKQCIIFVCSRNETNKTIEFLINHALKNNEIEYFVNNVYTDNDI 736
Query: 777 LQSHTDMVKSNDL--KDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGV 834
+ + KSN+L K YG IHHAGM+R D+ LVE LF VL T+TLAWGV
Sbjct: 737 KKK---IKKSNNLYIKQFYEYGCTIHHAGMSRSDKILVESLFKKKVFNVLCCTSTLAWGV 793
Query: 835 NLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYY 894
NLP HTVIIKGT ++ E G ++ LDI Q+ GR GRPQY+S+G I+IT ++L Y
Sbjct: 794 NLPVHTVIIKGTNYFSSESGKLEDMDILDINQIFGRCGRPQYESHGHAILITERTKLYKY 853
Query: 895 LSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLA 954
+ L+ IES F+ + + LNAEI +GT++N ++ W+ YTYL+IRM +NP LY +
Sbjct: 854 IKLLTNNTVIESNFLKNIENHLNAEISIGTIKNIEDGIKWLEYTYLFIRMKKNPYLYDVD 913
Query: 955 PEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTIS 1014
+ D+ L +R D++ A L N LV+ + F T G+IA+ YY+ + TI
Sbjct: 914 ---INNDLNLYNKRKDIIMKAIQNLSENKLVRRVLLTNDFIGTFYGQIAAKYYVDYKTIG 970
Query: 1015 TYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEP-SAK 1073
+ E+++ IE+ ++ S ++EF+ + +R ++ + L D+ I KE +E +
Sbjct: 971 MFAENVQNN-NYIEIIQVISKAKEFENIQIRNEDMKDFLYLKDKCDI--KEEYDESKNMT 1027
Query: 1074 INVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLK--RGWAQLAEKALNLSK 1131
+ +L++ Y+ +L++ S+ ++ +I Q+ R+L A ++I L + + L NL
Sbjct: 1028 LRILIEVYLRRLQINNFSIICEINYIVQNIIRILYAYYDICLNILKNISNLIMNTHNLIV 1087
Query: 1132 MVTKRMWSVQTPLRQFNGIPNEILMKLEK 1160
+ +R+ + + + NE+L K +K
Sbjct: 1088 AILRRL-PINCGIFRHFCYKNEMLEKNKK 1115
Score = 361 (132.1 bits), Expect = 4.5e-60, Sum P(3) = 4.5e-60
Identities = 77/256 (30%), Positives = 141/256 (55%)
Query: 771 SVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATL 830
+V+ + Q++ +++++ LK++L YG IHHAG+ D+ +VE LF + +Q+L+ T+TL
Sbjct: 1789 NVANILFQNYLNLIENEHLKEILKYGIGIHHAGLNENDKTIVEYLFLNKIIQILICTSTL 1848
Query: 831 AWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE 890
AWG+NLPA+ VIIKG + Y+ + + ++ D++QM+GRAGRPQ+D I++
Sbjct: 1849 AWGINLPAYLVIIKGNEFYDAKTKKYKDIPYTDLLQMIGRAGRPQFDDKALAILLVQEKR 1908
Query: 891 LRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPAL 950
+ + + IES + + +NAEI + N ++ N++ +Y + R+ NP+
Sbjct: 1909 KNAIKNFLYHPMNIESNIMENFNEHINAEICSNVINNKEDIFNYLTKSYYFKRLFSNPSY 1968
Query: 951 YGLAPEVLK--EDITLG--------ERRADLVHTAATILDRNNLVKYDRKS---GYFQVT 997
Y + ++ E+ L + D++ L +N ++ +++ Y+ T
Sbjct: 1969 YIKEVQYVQFFENSKLSTHAKKIIYDHLNDVIENGIKFLVQNKCLEVVQENYVLNYY-AT 2027
Query: 998 DLGRIASYYYISHGTI 1013
LG IAS YYI T+
Sbjct: 2028 PLGHIASMYYIKCETV 2043
Score = 344 (126.2 bits), Expect = 4.5e-60, Sum P(3) = 4.5e-60
Identities = 102/349 (29%), Positives = 172/349 (49%)
Query: 469 PLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVA 528
PL P + +P + + F N +Q++++ + + +NILL APTG+GKT +
Sbjct: 1348 PLTPLST--NVLNIPNYIK--FFSFKYFNPIQTQMFHATFHTDENILLGAPTGSGKTVIG 1403
Query: 529 VLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVRELSGD 587
L IL+ L +G K VY+ PMKA+V E + ++ + +++ V EL+GD
Sbjct: 1404 ELCILRNLL---RCEGQ------KSVYICPMKAIVNERYKSWKSKFKSLFNKNVIELTGD 1454
Query: 588 QTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXX-NRGPVLESI 646
+ ++ I E+ II+ TPEK D+ITR ++ + + + NRG V+E +
Sbjct: 1455 KNENKENIAESNIIICTPEKLDVITRNWKNKKFVKNINLIIFDEIHLLGQENRGGVIEIL 1514
Query: 647 VARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIG 706
V R + IRL+GL+ + + +D+ L+L V E LF F +S R VP +G
Sbjct: 1515 VNRFKNMQNELNKKIRLIGLTTVITSVDDLILWLDVK-ENYLFNFPSSCRIVPCKTHILG 1573
Query: 707 IQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRF 766
K R +MN ++ + A VLIFV SR++T TA I L + L F
Sbjct: 1574 FTQKAYCNRMSVMNKNVFDAINQYAQTKNVLIFVSSRRQTRLTAYDIISLNLSSHNLN-F 1632
Query: 767 LKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDL 815
L +++ + ++H D + + K+ I++ M GD + E++
Sbjct: 1633 LHVENLLND--KNHIDFLLNTQKKNKKN---KINNKDMNEGDNNIAENI 1676
Score = 160 (61.4 bits), Expect = 1.0e-116, Sum P(3) = 1.0e-116
Identities = 35/134 (26%), Positives = 71/134 (52%)
Query: 1158 LEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVEL 1217
LEKK+ +E LS +EL +R + + + P L + ++QPIT+T++K+ L
Sbjct: 1187 LEKKNLTYESIEHLSKKELLFFMRNEIYTNQILYYRNIIPNLDIDGYIQPITQTIMKINL 1246
Query: 1218 TIT-PDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEP 1276
+ + +W D+ + +E F + + + IL+ + F + K+ ++ H ++F P+
Sbjct: 1247 NVKLTNTIWSDQWNDIIENFHIFLLNTLNNDILYFQKFSIHKKDRKKIHDISFEFPLSNQ 1306
Query: 1277 LPPQYFIRVVSDKW 1290
+PPQ ++ +S W
Sbjct: 1307 IPPQITVQFLSMNW 1320
Score = 152 (58.6 bits), Expect = 1.0e-116, Sum P(3) = 1.0e-116
Identities = 30/65 (46%), Positives = 44/65 (67%)
Query: 474 EKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTIL 533
++L+ ++ +P W + F N VQS+V+ SA S N+L+CAPTG GKTN+A+L IL
Sbjct: 319 KELVSVNVLPFWHKYIFD-FEYFNYVQSKVFNSAFRSNKNLLVCAPTGCGKTNIALLVIL 377
Query: 534 QQLAL 538
QQ+ L
Sbjct: 378 QQIIL 382
Score = 71 (30.1 bits), Expect = 4.5e-60, Sum P(3) = 4.5e-60
Identities = 24/114 (21%), Positives = 55/114 (48%)
Query: 1010 HGTISTYNEHLKP---TMGD--IELCRLFSL---SEEFKYVTVRQDEKMELAKLLDRVPI 1061
+G I N++++ T+ + +E +F L ++EF + +R +E KL +++P+
Sbjct: 2125 NGDIDKLNDNMQTDFCTLKNDSLEFYDIFELVVQAKEFDDIPLRHNEDKYNVKLRNQIPL 2184
Query: 1062 PVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVL 1115
+ ++ P+ K +LL + + E + D+ + R++ A +I L
Sbjct: 2185 DIDMNM--PNVKTYLLLLSRFYECTYETVDYHIDLKLVMDQIARVINAFIDICL 2236
Score = 52 (23.4 bits), Expect = 3.3e-106, Sum P(3) = 3.3e-106
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 538 LNRNDDGSFNHSNYKIVYVAPMKA-LVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIE 596
+N D+ NHSNY Y+ K + ++ N N L + + + TLTR+ +E
Sbjct: 134 INNKDNSIINHSNYNEGYIIINKNNTMKKIYINEINELLIEIIYI-------TLTRENLE 186
Query: 597 ETQI 600
+ +
Sbjct: 187 NSLV 190
Score = 42 (19.8 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 22/99 (22%), Positives = 42/99 (42%)
Query: 732 GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHT---DMVKSND 788
G H LI ++ E + T + N +LKE +V+ IL+ + ++
Sbjct: 1146 GVH--LIDINEENEYSNTYNNYSNNNRRNQNYTVYLKEAAVN--ILEKKNLTYESIEHLS 1201
Query: 789 LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVST 827
K+LL + + R ++ +L DG++Q + T
Sbjct: 1202 KKELLFFMRNEIYTNQILYYRNIIPNLDIDGYIQPITQT 1240
Score = 39 (18.8 bits), Expect = 2.2e-06, Sum P(3) = 2.2e-06
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 600 IIVTTPEKWDIITRKSGDRTYTQLVK 625
+I+ E +D T+K D YT L++
Sbjct: 1859 VIIKGNEFYDAKTKKYKDIPYTDLLQ 1884
Score = 38 (18.4 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 513 NILLCAPTGAGKTNVAVLTIL 533
N+L C T A N+ V T++
Sbjct: 781 NVLCCTSTLAWGVNLPVHTVI 801
Score = 37 (18.1 bits), Expect = 2.2e-24, Sum P(2) = 2.2e-24
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 1064 KESLEEPSAKINVLLQAYISQLKLEGL 1090
K S EE N+L Q Y++ ++ E L
Sbjct: 1781 KLSEEERKNVANILFQNYLNLIENEHL 1807
>UNIPROTKB|H9L351 [details] [associations]
symbol:H9L351 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0004386 GeneTree:ENSGT00640000091272 EMBL:AADN02064073
EMBL:AADN02064074 Ensembl:ENSGALT00000021750
Ensembl:ENSGALT00000036125 Uniprot:H9L351
Length = 254
Score = 987 (352.5 bits), Expect = 1.9e-99, P = 1.9e-99
Identities = 187/252 (74%), Positives = 216/252 (85%)
Query: 758 LENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFG 817
LE DTLG FL+E S S E+L++ + K+ +LKDLLPYGFAIHHAGMTR DR LVEDLF
Sbjct: 3 LEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFA 62
Query: 818 DGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD 877
D H+QVLVSTATLAWGVNLPAHTVIIKGTQ+Y+PEKG WTEL LDI+QMLGRAGRPQYD
Sbjct: 63 DKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYD 122
Query: 878 SYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGY 937
+ GEGI+IT H EL+YYLSL+NQQLPIESQ VSKL D LNAE VLG VQNAK+A NW+GY
Sbjct: 123 TKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAETVLGNVQNAKDAVNWLGY 182
Query: 938 TYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVT 997
TYLYIRMLR+P LYG++ + LK D L +RR DLVHTAA +LD+NNLVKYD+K+G FQVT
Sbjct: 183 TYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVT 242
Query: 998 DLGRIASYYYIS 1009
+LGRIAS+YYI+
Sbjct: 243 ELGRIASHYYIT 254
>UNIPROTKB|C9JAQ9 [details] [associations]
symbol:SNRNP200 "U5 small nuclear ribonucleoprotein 200 kDa
helicase" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR011545 Pfam:PF00270 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 InterPro:IPR004179 Pfam:PF02889
HOGENOM:HOG000157749 GO:GO:0008026 EMBL:AC021188 HGNC:HGNC:30859
ChiTaRS:SNRNP200 IPI:IPI01018841 ProteinModelPortal:C9JAQ9
SMR:C9JAQ9 STRING:C9JAQ9 Ensembl:ENST00000349783
ArrayExpress:C9JAQ9 Bgee:C9JAQ9 Uniprot:C9JAQ9
Length = 625
Score = 657 (236.3 bits), Expect = 9.3e-92, Sum P(2) = 9.3e-92
Identities = 144/347 (41%), Positives = 217/347 (62%)
Query: 260 LNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKIL-AEGDDREVENKLLYHLQFDK 318
L+ +DIDA+WLQR++S+ +D I QK A+EVL+IL DDRE EN+L+ L F+
Sbjct: 258 LHPRDIDAFWLQRQLSRFYDDAI---VSQKKADEVLEILKTASDDRECENQLVLLLGFNT 314
Query: 319 FSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKER 378
F IK L ++R+ +++CT LA AQ + E+++I +M P+L+ L QLH T KE
Sbjct: 315 FDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEA-DPELSKFLYQLHETE---KED 370
Query: 379 QKNLEKSIREEARRLKDESASXXXXXXXXXXXXXXXXXWLGQRQLLDLDTLAFQQGGLFM 438
E+S RE R+ + ++ L RQ+LDL+ L F QG FM
Sbjct: 371 LIREERSRRERVRQSRMDTDLETMDLDQGGEA-------LAPRQVLDLEDLVFTQGSHFM 423
Query: 439 ANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNR 498
AN++C LP+GS R KGYEE+HVPA+K KP E+L+ + ++P++AQ F+G LNR
Sbjct: 424 ANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKTLNR 483
Query: 499 VQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558
+QS++Y++AL + +N+LLCAPTGAGKTNVA++ +L+++ + N DG+ N ++KI+Y+AP
Sbjct: 484 IQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAP 543
Query: 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTP 605
M++LV E+VG+ R D K L + LT QQ + ++ P
Sbjct: 544 MRSLVQEMVGSFGKR----DAKSNSLISIKRLTLQQKAKVKLDFVAP 586
Score = 295 (108.9 bits), Expect = 9.3e-92, Sum P(2) = 9.3e-92
Identities = 77/182 (42%), Positives = 102/182 (56%)
Query: 9 AEAHARFKQYEYRANSSLVLTTDSRPRDT---HEPTGEPESLWGKIDPRSFGDRAFRGRP 65
A+ AR QYEY+ANS+LVL D D EPTGE SL GK++ GD+A R +P
Sbjct: 2 ADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTKP 61
Query: 66 PXXXXXXXXXXXXXXXRDPDADAAAA----SEGT-------YQPKTKETRAAYEAMLSVI 114
R D + SEG Y+PKTKETR YE +LS I
Sbjct: 62 QMQEERRAKRRKRDEDRH-DINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI 120
Query: 115 QQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLVSIGKLIT 174
Q LG QP +I+ GAADE+LAVLKN+ +++ +++KEI+ LL + + LV++GK IT
Sbjct: 121 QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKIT 180
Query: 175 DY 176
DY
Sbjct: 181 DY 182
>UNIPROTKB|H9L1I6 [details] [associations]
symbol:SNRNP200 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 GeneTree:ENSGT00640000091272
GO:GO:0008026 EMBL:AADN02044729 EMBL:AADN02044730
Ensembl:ENSGALT00000035544 Uniprot:H9L1I6
Length = 571
Score = 653 (234.9 bits), Expect = 1.1e-90, Sum P(2) = 1.1e-90
Identities = 138/320 (43%), Positives = 207/320 (64%)
Query: 260 LNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKIL-AEGDDREVENKLLYHLQFDK 318
L+ +DIDA+WLQR++S+ +D I QK A+EVL+IL DDRE EN+L+ L F+
Sbjct: 258 LHPRDIDAFWLQRQLSRFYDDAI---VSQKKADEVLEILKTASDDRECENQLVLLLGFNT 314
Query: 319 FSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKER 378
F IK L ++R+ +++CT LA AQ + E+++I +M P+L+ L QLH T KE
Sbjct: 315 FDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEA-DPELSKFLYQLHETE---KED 370
Query: 379 QKNLEKSIREEARRLKDESASXXXXXXXXXXXXXXXXXWLGQRQLLDLDTLAFQQGGLFM 438
E+S RE R+ + ++ L RQ+LDL+ L F QG FM
Sbjct: 371 LIREERSRRERVRQSRMDTDLETMDLDQGGEA-------LAPRQVLDLEDLVFAQGSHFM 423
Query: 439 ANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNR 498
AN++C LP+GS R KGYEE+HVPA+K KP E+L+ + ++P++AQ F+G LNR
Sbjct: 424 ANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLVSVEKLPKYAQAGFEGFKTLNR 483
Query: 499 VQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558
+QS++Y++AL S +N+LLCAPTGAGKTNVA++ +L+++ + N DG+ N +KI+Y+AP
Sbjct: 484 IQSKLYRAALESDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDEFKIIYIAP 543
Query: 559 MKALVAEVVGNLSNRLQMYD 578
M++LV E+VG+ RL + +
Sbjct: 544 MRSLVQEMVGSFGKRLWLQE 563
Score = 289 (106.8 bits), Expect = 1.1e-90, Sum P(2) = 1.1e-90
Identities = 76/182 (41%), Positives = 101/182 (55%)
Query: 9 AEAHARFKQYEYRANSSLVLTTDSRPRDT---HEPTGEPESLWGKIDPRSFGDRAFRGRP 65
A+ AR QYEY+ANS+LVL D D EPTGE SL GK++ GD+A R +P
Sbjct: 2 ADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTKP 61
Query: 66 PXXXXXXXXXXXXXXXRDPDADAAAA----SEGT-------YQPKTKETRAAYEAMLSVI 114
R D + SEG Y+PKTK TR YE +LS I
Sbjct: 62 QMQEERRAKRRKRDEDRH-DINTMKGYTLLSEGIDEMVGIIYKPKTKVTRETYEVLLSFI 120
Query: 115 QQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLVSIGKLIT 174
Q LG QP +I+ GAADE+LAVLKN+ +++ +++KEI+ LL + + LV++GK IT
Sbjct: 121 QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKIT 180
Query: 175 DY 176
DY
Sbjct: 181 DY 182
>UNIPROTKB|H9KZ72 [details] [associations]
symbol:SNRNP200 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 GeneTree:ENSGT00640000091272
GO:GO:0008026 EMBL:AADN02044729 EMBL:AADN02044730
Ensembl:ENSGALT00000005505 Uniprot:H9KZ72
Length = 613
Score = 578 (208.5 bits), Expect = 1.6e-82, Sum P(2) = 1.6e-82
Identities = 125/289 (43%), Positives = 185/289 (64%)
Query: 260 LNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKIL-AEGDDREVENKLLYHLQFDK 318
L+ +DIDA+WLQR++S+ +D I QK A+EVL+IL DDRE EN+L+ L F+
Sbjct: 258 LHPRDIDAFWLQRQLSRFYDDAI---VSQKKADEVLEILKTASDDRECENQLVLLLGFNT 314
Query: 319 FSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKER 378
F IK L ++R+ +++CT LA AQ + E+++I +M P+L+ L QLH T KE
Sbjct: 315 FDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEA-DPELSKFLYQLHETE---KED 370
Query: 379 QKNLEKSIREEARRLKDESASXXXXXXXXXXXXXXXXXWLGQRQLLDLDTLAFQQGGLFM 438
E+S RE R+ + ++ L RQ+LDL+ L F QG FM
Sbjct: 371 LIREERSRRERVRQSRMDTDLETMDLDQGGEA-------LAPRQVLDLEDLVFAQGSHFM 423
Query: 439 ANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNR 498
AN++C LP+GS R KGYEE+HVPA+K KP E+L+ + ++P++AQ F+G LNR
Sbjct: 424 ANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLVSVEKLPKYAQAGFEGFKTLNR 483
Query: 499 VQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFN 547
+QS++Y++AL S +N+LLCAPTGAGKTNVA++ +L+++ + N DG+ N
Sbjct: 484 IQSKLYRAALESDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTIN 532
Score = 289 (106.8 bits), Expect = 1.6e-82, Sum P(2) = 1.6e-82
Identities = 76/182 (41%), Positives = 101/182 (55%)
Query: 9 AEAHARFKQYEYRANSSLVLTTDSRPRDT---HEPTGEPESLWGKIDPRSFGDRAFRGRP 65
A+ AR QYEY+ANS+LVL D D EPTGE SL GK++ GD+A R +P
Sbjct: 2 ADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTKP 61
Query: 66 PXXXXXXXXXXXXXXXRDPDADAAAA----SEGT-------YQPKTKETRAAYEAMLSVI 114
R D + SEG Y+PKTK TR YE +LS I
Sbjct: 62 QMQEERRAKRRKRDEDRH-DINTMKGYTLLSEGIDEMVGIIYKPKTKVTRETYEVLLSFI 120
Query: 115 QQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLVSIGKLIT 174
Q LG QP +I+ GAADE+LAVLKN+ +++ +++KEI+ LL + + LV++GK IT
Sbjct: 121 QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKIT 180
Query: 175 DY 176
DY
Sbjct: 181 DY 182
>RGD|1584010 [details] [associations]
symbol:Hfm1 "HFM1, ATP-dependent DNA helicase homolog (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1584010 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00973 GO:GO:0008026
GeneTree:ENSGT00550000074822 IPI:IPI00766186
Ensembl:ENSRNOT00000033794 UCSC:RGD:1584010 Uniprot:F1LWY1
Length = 954
Score = 819 (293.4 bits), Expect = 3.1e-81, P = 3.1e-81
Identities = 243/758 (32%), Positives = 385/758 (50%)
Query: 490 FKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHS 549
FK N +QS+ + L + N ++CAPTG+GKT V L I + L +
Sbjct: 6 FKEFPYFNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAITRLLM-----EAPLPWL 60
Query: 550 NYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKW 608
N K+VY+AP+KAL ++ + + + +EL+GD + +I+ II+TTPEKW
Sbjct: 61 NMKVVYMAPIKALCSQRFDDWKEKFGPIGLTCKELTGDTVMDDLFEIQHANIIMTTPEKW 120
Query: 609 DIITRKSGDRTYTQLVKXXXXXXXXXXXX-NRGPVLESIVAR--TVRQIETTKEH----- 660
D +TRK D ++ QLV+ NRGP LE +V+R TV+ + T E+
Sbjct: 121 DSMTRKWRDNSFIQLVRLFLIDEVHVIKDENRGPTLEVVVSRMKTVQSLSKTLENASPAP 180
Query: 661 IRLVGLSATLPNYEDVALFLRVNLEKGL-FYFDNSYRPVPLSQQYIGIQVKKPLQRFQL- 718
+R V +SAT+PN ED+A +L + D S+RPV L + +G F+
Sbjct: 181 VRFVAVSATIPNAEDIAEWLSDGERPAVCLKMDESHRPVKLQKVVLGFPSSSNQTEFKFD 240
Query: 719 --MNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREI 776
+N Y + + + L+F +RK + A + L D +F+ +V +++
Sbjct: 241 LALNYKVYSVIRTYSDQKPTLVFCATRKGVQQAA-----SVLVKDA--KFII--TVEQKL 291
Query: 777 -LQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVN 835
LQ ++ + LKD L YG HHAGM DR+LVE+LF G + VL +T+TLA GVN
Sbjct: 292 RLQKSAYSIRDSKLKDTLVYGVGYHHAGMELSDRKLVEELFTSGDLPVLFTTSTLAMGVN 351
Query: 836 LPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYL 895
LPAH V+IK T Y GA+ E S DI+QM+GRAGRPQ+D+ +I+T S Y+
Sbjct: 352 LPAHLVVIKSTMHYTG--GAFEEYSETDILQMIGRAGRPQFDTTATAVIMTRLSTREKYV 409
Query: 896 SLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAP 955
++ +ES L + LNAEIVL T+ + A +WI T LYIR L+NP+ YG
Sbjct: 410 QMLACNDTVESSLHRHLIEHLNAEIVLHTITDVSIALDWIRSTLLYIRALKNPSHYGFIS 469
Query: 956 EVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTIST 1015
+ K+ I + +L L +L+K D F+ T+ GR+ ++YYI+ T+
Sbjct: 470 GLNKDGIEA--KLQELCLKNLKDLSSLDLIKMDEDLN-FRSTEAGRLMAWYYITFETVKK 526
Query: 1016 YNEHL-KPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLL---DRVPI--PVKESLEE 1069
+ K T+ D L + S EF V +R EK L L +R+ I P++ ++
Sbjct: 527 FCAISGKETLSD--LISMISSCSEFLDVQLRISEKRTLNTLNKDPNRITIRFPMEGRIKT 584
Query: 1070 PSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVL--KRGWAQLAEKAL 1127
K+N L+QA + + ++ +LT D I ++ R+ + L + V ++ +A L +
Sbjct: 585 REMKVNCLIQAQLGCIPIQDFALTQDTSKIFRNGSRIAKWLSDFVTAQEQKFAVLLNSVI 644
Query: 1128 NLSKMVTKRMW-SVQTPLRQFNGIPNEILMKLEKKDF-AWERYYDLSPQELGELI--RFP 1183
L+K ++W + Q +Q + I + + ++++ + + +EL ELI R P
Sbjct: 645 -LAKCFKCKLWENSQHVSKQLDKIGISLSNTMVNAGLTSFKKIEEANAREL-ELILNRHP 702
Query: 1184 KMGRTLHKFVHQFPKLILAAHVQPITR-TVLKVELTIT 1220
G + + V PK L A + I R + K E+ +T
Sbjct: 703 PFGTQIKEAVMYLPKYELEA--EQIARYSDTKAEILVT 738
>UNIPROTKB|F1MFR1 [details] [associations]
symbol:HFM1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 OMA:EADEMKS
GeneTree:ENSGT00550000074822 EMBL:DAAA02007913 EMBL:DAAA02007914
EMBL:DAAA02007915 EMBL:DAAA02007916 IPI:IPI00839892
Ensembl:ENSBTAT00000027789 Uniprot:F1MFR1
Length = 1438
Score = 805 (288.4 bits), Expect = 4.0e-77, P = 4.0e-77
Identities = 257/823 (31%), Positives = 403/823 (48%)
Query: 462 VPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTG 521
V + K LD L ++E+P + FK N +QS+ + L + N ++CAPTG
Sbjct: 252 VQGVTEKSLD---SLKAVTEIPAKFRSIFKEFPYFNYIQSKAFDDLLYTDRNFVICAPTG 308
Query: 522 AGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKV 581
+GKT V L I + L + SN KIVY+AP+KAL ++ + + +
Sbjct: 309 SGKTVVFELAITRLLM-----EVPLPWSNIKIVYMAPIKALCSQRFDDWKKKFGPIGLNC 363
Query: 582 RELSGDQTLTRQ-QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXX-NR 639
+EL+GD + +I+ II+TTPEKWD +TRK D + LV+ NR
Sbjct: 364 KELTGDTVMDDLFEIQHAHIIMTTPEKWDSMTRKWRDNSLVHLVRLFLIDEVHVVKDENR 423
Query: 640 GPVLESIVAR--TVR----QIETTKEHI--RLVGLSATLPNYEDVALFLRVNLEKGL-FY 690
GP LE +V+R TV+ +E T I R V +SAT+PN ED+A +L +
Sbjct: 424 GPTLEVVVSRMKTVQILSPAVENTNSIIPMRFVAVSATIPNAEDIAEWLSDGERSAVCLK 483
Query: 691 FDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAV----AGKHQVLIFVHSRKET 746
D +RPV L + +G F+ L Y K+ ++ + + L+F +RK
Sbjct: 484 MDERHRPVKLRKVVLGFPSSDNQTEFKFDLTLNY-KIASIIQTYSDQKPTLVFCATRKGV 542
Query: 747 AKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLK-DLLPYGFAIHHAGMT 805
+ A + L D +F+ ++ LQ +K + L+ D+L +G A HHAGM
Sbjct: 543 QQAA-----SVLVKDA--KFIMTVE-QKQRLQKCAYSIKDSKLRVDILIHGVAYHHAGME 594
Query: 806 RGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIM 865
DR++VE F G + VL +T+TLA GVNLPAH V+IK T Y G + E S DI+
Sbjct: 595 LSDRKVVEGAFTVGDIPVLFTTSTLAMGVNLPAHLVVIKSTMHY--AGGMFEEYSETDIL 652
Query: 866 QMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTV 925
QM+GRAGRPQ+D+ +I+T S Y+ ++ IES L + LNAEIVL T+
Sbjct: 653 QMIGRAGRPQFDTTATAVIMTRLSTKEKYIQMLACSDTIESSLHRHLIEHLNAEIVLHTI 712
Query: 926 QNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLV 985
N A WI T LYIR L+NP+ YG A + K+ I + +L L NL+
Sbjct: 713 TNVNIALEWIRSTLLYIRALKNPSHYGFASGLNKDGIE--SKLQELCLKNLNDLSSLNLI 770
Query: 986 KYDRKSGYFQVTDLGRIASYYYISHGTISTY-NEHLKPTMGDIELCRLFSLSEEFKYVTV 1044
K D F+ T+ GR+ ++YYI+ T+ + K T+ D L + + +EF V +
Sbjct: 771 KMDEDIN-FKPTEAGRLMAWYYITFETVKKFCTMSGKETLSD--LVTMIASCKEFLDVQL 827
Query: 1045 RQDEKMELAKLL---DRVPI--PVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFI 1099
R +EK L L +R I P++ ++ K+N L+QA + + ++ +LT D I
Sbjct: 828 RINEKKALNTLNKDPNRTTIRFPMEGRIKTREMKVNCLIQAQLGCIPVQDFALTQDTAKI 887
Query: 1100 TQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPL-RQFNGIPNEILMKL 1158
++ R+ R L + V + + +L L+K ++W + +Q I + +
Sbjct: 888 FRNGSRITRWLSDFVATQEKFAVLLNSLILAKCFRCKLWENSPHVSKQLEKIGITLSNAM 947
Query: 1159 EKKDF-AWERYYDLSPQELGELI--RFPKMGRTLHKFVHQFPKLILAAHVQPITR---TV 1212
++++ + +EL ELI R P G + + V PK L V+ ITR T+
Sbjct: 948 VNAGLTSFKKIEETDAREL-ELILNRHPPFGTQIKETVMYLPKYEL--EVEQITRYSDTM 1004
Query: 1213 LKVELT-ITPDF--LWDDKVHGYVEPFWVIVEDNDGEYILHHE 1252
++ +T I +F L + +I+ D D + + H+
Sbjct: 1005 AEILVTVILRNFEQLQTKRTASNSHYVTLIIGDADNQLVFKHK 1047
>UNIPROTKB|A2PYH4 [details] [associations]
symbol:HFM1 "Probable ATP-dependent DNA helicase HFM1"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00973 eggNOG:COG1204 GO:GO:0008026 KO:K15271
EMBL:AB204867 EMBL:AK094079 EMBL:BX323048 EMBL:AC098691
IPI:IPI00374013 IPI:IPI00852603 RefSeq:NP_001017975.3
UniGene:Hs.454818 ProteinModelPortal:A2PYH4 SMR:A2PYH4
STRING:A2PYH4 PhosphoSite:A2PYH4 PaxDb:A2PYH4 PRIDE:A2PYH4
Ensembl:ENST00000294696 Ensembl:ENST00000370425 GeneID:164045
KEGG:hsa:164045 UCSC:uc001doa.4 CTD:164045 GeneCards:GC01M091726
HGNC:HGNC:20193 HPA:HPA035557 neXtProt:NX_A2PYH4
PharmGKB:PA142671690 HOGENOM:HOG000293238 HOVERGEN:HBG103774
InParanoid:A2PYH4 OMA:EADEMKS OrthoDB:EOG44XJHC ChiTaRS:HFM1
GenomeRNAi:164045 NextBio:88429 ArrayExpress:A2PYH4 Bgee:A2PYH4
CleanEx:HS_HFM1 Genevestigator:A2PYH4 Uniprot:A2PYH4
Length = 1435
Score = 799 (286.3 bits), Expect = 3.6e-76, Sum P(2) = 3.6e-76
Identities = 245/771 (31%), Positives = 389/771 (50%)
Query: 479 ISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLAL 538
++E+P + FK N +QS+ + L + N ++CAPTG+GKT V L I + L
Sbjct: 264 VTEIPAKFRSIFKEFPYFNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAITRLLM- 322
Query: 539 NRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ-QIEE 597
+ N KIVY+AP+KAL ++ + + + +EL+GD + +I+
Sbjct: 323 ----EVPLPWLNIKIVYMAPIKALCSQRFDDWKEKFGPIGLNCKELTGDTVMDDLFEIQH 378
Query: 598 TQIIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXX-NRGPVLESIVAR--TVRQI 654
II+TTPEKWD +TRK D + QLV+ NRGP LE +V+R TV+ +
Sbjct: 379 AHIIMTTPEKWDSMTRKWRDNSLVQLVRLFLIDEVHIVKDENRGPTLEVVVSRMKTVQSV 438
Query: 655 ETTKEH------IRLVGLSATLPNYEDVALFLRVNLEKGL-FYFDNSYRPVPLSQQYIGI 707
T ++ +R V +SAT+PN ED+A +L + D S+RPV L + +G
Sbjct: 439 SQTLKNTSTAIPMRFVAVSATIPNAEDIAEWLSDGERPAVCLKMDESHRPVKLQKVVLGF 498
Query: 708 QVKKPLQRFQLMNDLCYEKVVAV----AGKHQVLIFVHSRKETAKTARAIRDTALENDTL 763
F+ L Y K+ +V + + L+F +RK + A + L D
Sbjct: 499 PCSSNQTEFKFDLTLNY-KIASVIQMYSDQKPTLVFCATRKGVQQAA-----SVLVKDA- 551
Query: 764 GRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQV 823
+F+ ++ LQ + V+ + L+D+L G A HHAGM DR++VE F G + V
Sbjct: 552 -KFIMTVE-QKQRLQKYAYSVRDSKLRDILKDGAAYHHAGMELSDRKVVEGAFTVGDLPV 609
Query: 824 LVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883
L +T+TLA GVNLPAH V+IK T Y G + E S DI+QM+GRAGRPQ+D+ +
Sbjct: 610 LFTTSTLAMGVNLPAHLVVIKSTMHY--AGGLFEEYSETDILQMIGRAGRPQFDTTATAV 667
Query: 884 IITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIR 943
I+T S Y+ ++ + +ES L + LNAEIVL T+ + A WI T LYIR
Sbjct: 668 IMTRLSTRDKYIQMLACRDTVESSLHRHLIEHLNAEIVLHTITDVNIAVEWIRSTLLYIR 727
Query: 944 MLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIA 1003
L+NP+ YG A + K+ I + +L L +L+K D F+ T+ GR+
Sbjct: 728 ALKNPSHYGFASGLNKDGIEA--KLQELCLKNLNDLSSLDLIKMDEGVN-FKPTEAGRLM 784
Query: 1004 SYYYISHGTIST-YNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLL---DRV 1059
++YYI+ T+ Y K T+ D L L + +EF + +R +EK L L +R+
Sbjct: 785 AWYYITFETVKKFYTISGKETLSD--LVTLIAGCKEFLDIQLRINEKKTLNTLNKDPNRI 842
Query: 1060 PI--PVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVL-- 1115
I P++ ++ K+N L+QA + + ++ +LT D I + R+ R L + V
Sbjct: 843 TIRFPMEGRIKTREMKVNCLIQAQLGCIPIQDFALTQDTAKIFRHGSRITRWLSDFVAAQ 902
Query: 1116 KRGWAQLAEKALNLSKMVTKRMWSVQTPL-RQFNGIPNEILMKLEKKDF-AWERYYDLSP 1173
++ +A L +L L+K ++W + +Q I + + ++++ +
Sbjct: 903 EKKFAVLLN-SLILAKCFRCKLWENSLHVSKQLEKIGITLSNAIVNAGLTSFKKIEETDA 961
Query: 1174 QELGELI--RFPKMGRTLHKFVHQFPKLILAAHVQPITR---TVLKVELTI 1219
+EL ELI R P G + + V PK L V+ ITR T ++ +T+
Sbjct: 962 REL-ELILNRHPPFGTQIKETVMYLPKYELK--VEQITRYSDTTAEILVTV 1009
Score = 45 (20.9 bits), Expect = 3.6e-76, Sum P(2) = 3.6e-76
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 138 KNDAVKN-PDKKKEIEKLLNPIP 159
K D V+N PD +K ++ L P P
Sbjct: 18 KPDEVENHPDNEKSLDWFLPPAP 40
>UNIPROTKB|E2RA34 [details] [associations]
symbol:HFM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 KO:K15271 CTD:164045
GeneTree:ENSGT00550000074822 EMBL:AAEX03004823 RefSeq:XP_537081.3
Ensembl:ENSCAFT00000032148 GeneID:479956 KEGG:cfa:479956
Uniprot:E2RA34
Length = 1437
Score = 801 (287.0 bits), Expect = 4.4e-76, Sum P(2) = 4.4e-76
Identities = 243/775 (31%), Positives = 391/775 (50%)
Query: 474 EKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTIL 533
+ L ++E+P + FK N +QS+ + L + N ++CAPTG+GKT V L I
Sbjct: 261 DSLKAVTEIPAKFRSIFKEFPYFNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAIT 320
Query: 534 QQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ 593
+ L + SN KIVY+AP+KAL ++ + + + +EL+GD +
Sbjct: 321 RLLM-----EVPLPWSNIKIVYMAPIKALCSQRFDDWKEKFGPIGLNCKELTGDTVMDDL 375
Query: 594 -QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXX-NRGPVLESIVAR-- 649
+I+ II+TTPEKWD +TRK D + QLV+ NRGP LE +V+R
Sbjct: 376 FEIQHAHIIMTTPEKWDSMTRKWRDNSLVQLVRLFLIDEVHVVKDENRGPTLEVVVSRMK 435
Query: 650 TVRQIETTKEH-----IRLVGLSATLPNYEDVALFLRVNLEKGL-FYFDNSYRPVPLSQQ 703
TV+ + E+ +R V +SAT+PN ED+A +L + D +RPV L +
Sbjct: 436 TVQSLSPPSENSTVIPMRFVAVSATIPNAEDIAEWLSDGERPAVCLKMDEKHRPVKLQKV 495
Query: 704 YIGIQVKKPLQRFQLMNDLCYEKVVAV----AGKHQVLIFVHSRKETAKTARAIRDTALE 759
+G F+ L Y K+ V + + L+F +RK + A + L
Sbjct: 496 VLGFPCGSNQTEFKFDLTLNY-KIAGVIRTYSDQKPTLVFCATRKGVQQAA-----SVLV 549
Query: 760 NDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDG 819
D +F+ ++ LQ + ++ + L+D+L +G A HHAGM DR++VE F G
Sbjct: 550 KDA--KFIMAVE-QKQRLQKYAYSIRDSKLRDILIHGVAYHHAGMELSDRKVVEGAFTVG 606
Query: 820 HVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSY 879
+ VL +T+TLA GVNLPAH V+IK T Y G + E S DI+QM+GRAGRPQ+D+
Sbjct: 607 DLPVLFTTSTLAMGVNLPAHLVVIKSTMHY--AGGMFEEYSETDILQMIGRAGRPQFDTT 664
Query: 880 GEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTY 939
+I+T S Y+ ++ +ES L + LNAEIVL T+ + A WI T
Sbjct: 665 ATAVIMTRLSTKEKYIQMLACSDTVESSLHRHLIEHLNAEIVLHTITDVNIALEWIRSTL 724
Query: 940 LYIRMLRNPALYGLAPEVLKEDIT--LGERRADLVHTAATILDRNNLVKYDRKSGYFQVT 997
LYIR L+NP+ YG A + K+ I L E +H +++ +L++ D F+ T
Sbjct: 725 LYIRALKNPSHYGFASGLNKDGIEAKLQELCLKNLHDLSSL----DLIRMDEDVN-FKPT 779
Query: 998 DLGRIASYYYISHGTISTY-NEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLL 1056
+ GR+ ++YYI+ T+ + K T+ ++L + S +EF V +R +EK L L
Sbjct: 780 EAGRLMAWYYITFETVKKFCTISGKETL--LDLVTMISSCKEFVDVQLRINEKKILNTLN 837
Query: 1057 ---DRVPI--PVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALF 1111
+RV I P++ ++ KIN L+QA + + ++ +LT D+ I ++ R+ R L
Sbjct: 838 KDPNRVTIRFPMEGRIKTREMKINCLIQAQLGCIPIQDFALTQDISKIFRNGSRITRWLS 897
Query: 1112 EIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPL-RQFNGIPNEILMKLEKKDF-AWERYY 1169
+ V + + +L L+K ++W + +Q I + + ++++
Sbjct: 898 DFVAVQEKFAILLNSLILAKCFRCKLWENSLHVSKQLEKIGITLSNAMVNAGLTSFKKIE 957
Query: 1170 DLSPQELGELI--RFPKMGRTLHKFVHQFPKLILAAHVQPITR---TVLKVELTI 1219
+ +EL ELI R P G + + V PK V+ I R T+ ++ +TI
Sbjct: 958 ETDAREL-ELILNRHPPFGTQIKETVMYLPKY--EVEVEQIARYSDTMAEILVTI 1009
Score = 42 (19.8 bits), Expect = 4.4e-76, Sum P(2) = 4.4e-76
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 138 KNDAVKN-PDKKKEIEKLLNPIP 159
K D +N PD +K ++ L P+P
Sbjct: 18 KPDEAENYPDNEKLLDWFLPPVP 40
>UNIPROTKB|E2R5U9 [details] [associations]
symbol:HFM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 OMA:EADEMKS
GeneTree:ENSGT00550000074822 EMBL:AAEX03004823
Ensembl:ENSCAFT00000035369 Uniprot:E2R5U9
Length = 1466
Score = 801 (287.0 bits), Expect = 5.2e-76, Sum P(2) = 5.2e-76
Identities = 243/775 (31%), Positives = 391/775 (50%)
Query: 474 EKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTIL 533
+ L ++E+P + FK N +QS+ + L + N ++CAPTG+GKT V L I
Sbjct: 261 DSLKAVTEIPAKFRSIFKEFPYFNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAIT 320
Query: 534 QQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ 593
+ L + SN KIVY+AP+KAL ++ + + + +EL+GD +
Sbjct: 321 RLLM-----EVPLPWSNIKIVYMAPIKALCSQRFDDWKEKFGPIGLNCKELTGDTVMDDL 375
Query: 594 -QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXX-NRGPVLESIVAR-- 649
+I+ II+TTPEKWD +TRK D + QLV+ NRGP LE +V+R
Sbjct: 376 FEIQHAHIIMTTPEKWDSMTRKWRDNSLVQLVRLFLIDEVHVVKDENRGPTLEVVVSRMK 435
Query: 650 TVRQIETTKEH-----IRLVGLSATLPNYEDVALFLRVNLEKGL-FYFDNSYRPVPLSQQ 703
TV+ + E+ +R V +SAT+PN ED+A +L + D +RPV L +
Sbjct: 436 TVQSLSPPSENSTVIPMRFVAVSATIPNAEDIAEWLSDGERPAVCLKMDEKHRPVKLQKV 495
Query: 704 YIGIQVKKPLQRFQLMNDLCYEKVVAV----AGKHQVLIFVHSRKETAKTARAIRDTALE 759
+G F+ L Y K+ V + + L+F +RK + A + L
Sbjct: 496 VLGFPCGSNQTEFKFDLTLNY-KIAGVIRTYSDQKPTLVFCATRKGVQQAA-----SVLV 549
Query: 760 NDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDG 819
D +F+ ++ LQ + ++ + L+D+L +G A HHAGM DR++VE F G
Sbjct: 550 KDA--KFIMAVE-QKQRLQKYAYSIRDSKLRDILIHGVAYHHAGMELSDRKVVEGAFTVG 606
Query: 820 HVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSY 879
+ VL +T+TLA GVNLPAH V+IK T Y G + E S DI+QM+GRAGRPQ+D+
Sbjct: 607 DLPVLFTTSTLAMGVNLPAHLVVIKSTMHY--AGGMFEEYSETDILQMIGRAGRPQFDTT 664
Query: 880 GEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTY 939
+I+T S Y+ ++ +ES L + LNAEIVL T+ + A WI T
Sbjct: 665 ATAVIMTRLSTKEKYIQMLACSDTVESSLHRHLIEHLNAEIVLHTITDVNIALEWIRSTL 724
Query: 940 LYIRMLRNPALYGLAPEVLKEDIT--LGERRADLVHTAATILDRNNLVKYDRKSGYFQVT 997
LYIR L+NP+ YG A + K+ I L E +H +++ +L++ D F+ T
Sbjct: 725 LYIRALKNPSHYGFASGLNKDGIEAKLQELCLKNLHDLSSL----DLIRMDEDVN-FKPT 779
Query: 998 DLGRIASYYYISHGTISTY-NEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLL 1056
+ GR+ ++YYI+ T+ + K T+ ++L + S +EF V +R +EK L L
Sbjct: 780 EAGRLMAWYYITFETVKKFCTISGKETL--LDLVTMISSCKEFVDVQLRINEKKILNTLN 837
Query: 1057 ---DRVPI--PVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALF 1111
+RV I P++ ++ KIN L+QA + + ++ +LT D+ I ++ R+ R L
Sbjct: 838 KDPNRVTIRFPMEGRIKTREMKINCLIQAQLGCIPIQDFALTQDISKIFRNGSRITRWLS 897
Query: 1112 EIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPL-RQFNGIPNEILMKLEKKDF-AWERYY 1169
+ V + + +L L+K ++W + +Q I + + ++++
Sbjct: 898 DFVAVQEKFAILLNSLILAKCFRCKLWENSLHVSKQLEKIGITLSNAMVNAGLTSFKKIE 957
Query: 1170 DLSPQELGELI--RFPKMGRTLHKFVHQFPKLILAAHVQPITR---TVLKVELTI 1219
+ +EL ELI R P G + + V PK V+ I R T+ ++ +TI
Sbjct: 958 ETDAREL-ELILNRHPPFGTQIKETVMYLPKY--EVEVEQIARYSDTMAEILVTI 1009
Score = 42 (19.8 bits), Expect = 5.2e-76, Sum P(2) = 5.2e-76
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 138 KNDAVKN-PDKKKEIEKLLNPIP 159
K D +N PD +K ++ L P+P
Sbjct: 18 KPDEAENYPDNEKLLDWFLPPVP 40
>UNIPROTKB|F1S4E9 [details] [associations]
symbol:HFM1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 OMA:EADEMKS
GeneTree:ENSGT00550000074822 EMBL:CU179709
Ensembl:ENSSSCT00000007570 Uniprot:F1S4E9
Length = 1438
Score = 790 (283.2 bits), Expect = 5.6e-75, Sum P(2) = 5.6e-75
Identities = 250/811 (30%), Positives = 401/811 (49%)
Query: 474 EKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTIL 533
+ L ++E+P + FK N +QS+ + L + N+++CAPTG+GKT + L I
Sbjct: 261 DSLKAVTEIPAKFRSVFKEFPYFNYIQSKAFDDLLYTDRNVVVCAPTGSGKTVMFELAIT 320
Query: 534 QQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ 593
+ L + SN KIVY+AP+KAL ++ + + + +EL+GD +
Sbjct: 321 RLLM-----EVPLPWSNIKIVYMAPIKALCSQRFDDWKEKFGPIGLNCKELTGDTVMDDL 375
Query: 594 -QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXX-NRGPVLESIVAR-- 649
+I+ II+TTPEKWD +TRK D + QLV+ NRGP LE +V+R
Sbjct: 376 FEIQHAHIIMTTPEKWDSMTRKWRDNSLVQLVRLFLIDEVHVVKDENRGPTLEVVVSRMK 435
Query: 650 TVRQIETTKEH------IRLVGLSATLPNYEDVALFLRVNLEKGL-FYFDNSYRPVPLSQ 702
TV+ + E+ +R V +SAT+PN ED+A +L + D +RPV L +
Sbjct: 436 TVQFLSHAVENPRNIIPMRFVAVSATIPNAEDIAEWLSDGERSAICLKMDEKHRPVKLRK 495
Query: 703 QYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQ----VLIFVHSRKETAKTARAIRDTAL 758
+G F+ L Y K+ +V + L+F +RK + A + L
Sbjct: 496 VVLGFPCSNNQTEFKFDLTLNY-KIASVVQTYSDQKPTLVFCATRKGVQQAA-----SIL 549
Query: 759 ENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGD 818
D +F+ ++ L ++ + L+DLL +G A HHAGM DR++VE F
Sbjct: 550 VKDA--KFIMTVE-QKQRLHKCAYSIRDSKLRDLLIHGVAYHHAGMELSDRKVVEGAFTV 606
Query: 819 GHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDS 878
G + VL +T+TLA GVNLPAH V+IK T Y G + E S DI+QM+GRAGRPQ+D+
Sbjct: 607 GDLPVLFTTSTLAMGVNLPAHLVVIKSTMHY--AGGMFEEYSETDILQMIGRAGRPQFDT 664
Query: 879 YGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYT 938
+I+T S Y+ ++ +ES L + LNAEIVL T+ + A WI T
Sbjct: 665 TATAVIMTRLSTKEKYIQMLACSDTVESSLHRHLIEHLNAEIVLHTITDVNIALEWIRST 724
Query: 939 YLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTD 998
LYIR L+NP+ YG A + K+ I + +L L +L+K D F+ T+
Sbjct: 725 LLYIRALKNPSHYGFASGLNKDGIE--SKLQELCLKNLNDLSSLDLIKMDEDIN-FKPTE 781
Query: 999 LGRIASYYYISHGTISTY-NEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLL- 1056
GR+ ++YY++ T+ + K T+ D L + + +EF V +R +EK L L
Sbjct: 782 AGRLMAWYYVTFETVKKFCTISGKETLSD--LVTMIASCKEFLDVQLRINEKKTLNTLNK 839
Query: 1057 --DRVPI--PVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFE 1112
+R+ I P++ ++ K+N L+QA + + ++ +LT D I ++ R+ R L +
Sbjct: 840 DPNRITIRFPMEGKIKTREMKVNCLIQAQLGCIPIQDFALTQDTSKIFRNGSRITRWLSD 899
Query: 1113 IV-LKRGWAQLAEKALNLSKMVTKRMWSVQTPL-RQFNGIPNEILMKLEKKDF-AWERYY 1169
V ++ +A L +L L+K ++W + +Q I + + ++++
Sbjct: 900 FVAVQEKFAVLLN-SLILAKCFRCKLWENSLHVSKQLEKIGITLSNAMVNAGLTSFKKIE 958
Query: 1170 DLSPQELGELI--RFPKMGRTLHKFVHQFPKLILAAHVQPITR---TVLKVELT-ITPDF 1223
+ +EL ELI R P G + + V PK L V+ I R T +V +T I +F
Sbjct: 959 ETDAREL-ELILNRHPPFGTQIKETVMCLPKYEL--EVEQIARYSDTTAEVLVTVILRNF 1015
Query: 1224 --LWDDKVHGYVEPFWVIVEDNDGEYILHHE 1252
L + +I+ D D + I H+
Sbjct: 1016 EPLQTKRTAPDSHYVTLIIGDADNQLIFKHK 1046
Score = 44 (20.5 bits), Expect = 5.6e-75, Sum P(2) = 5.6e-75
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 131 DEILAVLKNDAVKNPDKKKEIEKLLNPIP 159
D + ++A K PD +K ++ L P P
Sbjct: 12 DNLFFEKTDEAEKYPDNEKSLDWFLPPAP 40
>ZFIN|ZDB-GENE-061207-43 [details] [associations]
symbol:hfm1 "HFM1, ATP-dependent DNA helicase
homolog (S. cerevisiae)" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-061207-43 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00973 GO:GO:0008026
GeneTree:ENSGT00550000074822 EMBL:BX927353 EMBL:CABZ01046504
IPI:IPI00897259 ProteinModelPortal:F1QWJ0
Ensembl:ENSDART00000099851 Bgee:F1QWJ0 Uniprot:F1QWJ0
Length = 1049
Score = 725 (260.3 bits), Expect = 4.6e-69, P = 4.6e-69
Identities = 223/736 (30%), Positives = 358/736 (48%)
Query: 490 FKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHS 549
FK N VQS+ L S N + CAPTG+GKT + L I++ L + S
Sbjct: 6 FKDFPYFNYVQSQALDDVLYSNKNFVACAPTGSGKTVLFELAIVRLLI-----EASEPWH 60
Query: 550 NYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKW 608
N + VY+AP+KAL ++ N + +K +EL+GD + +I++ +I TT EKW
Sbjct: 61 NVRAVYMAPIKALCSQQYDNWKQKFGPLGLKCKELTGDTEIDDFFEIQDAHLIFTTAEKW 120
Query: 609 DIITRKSGDRTY-TQLVKXXXXXXXXXXXXNRGPVLESIVAR--TV---RQI--ETTKEH 660
D +TR+ D T + RG LE +V+R T+ RQ +K
Sbjct: 121 DSMTRRWKDNCLLTSIRLFLVDEVHVVKDKTRGATLEVVVSRMKTMHFYRQAINPESKAS 180
Query: 661 IRLVGLSATLPNYEDVALFLRVNLEKG---LFYFDNSYRPVPLSQQYIGIQVKKPLQRFQ 717
+R V +SAT+PN +DV+ +L + E G D S+RPV L + +G F+
Sbjct: 181 VRFVAVSATIPNIQDVSEWL--SDESGPATCLEMDESHRPVKLRKVVLGFPCGSNQNEFK 238
Query: 718 LMNDLCYEK---VVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSR 774
L Y+ + + + L+F +RK ++A + L D RF+ +
Sbjct: 239 FDLSLNYKLANIIQTYSDQKPTLVFCSTRKGVQQSA-----SVLAKDA--RFIMSIDHKQ 291
Query: 775 EILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGV 834
+++ ++ + L+DL YG HHAGM DR++ E+ F G + VL +T+TLA GV
Sbjct: 292 RLVKYANSLLDAK-LRDLFVYGIGYHHAGMDVSDRKITENAFTVGDLPVLFTTSTLAMGV 350
Query: 835 NLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYY 894
N+PAH V+IK T Y GA E S D++QM+GRAGRPQ+D+ +I+T Y
Sbjct: 351 NMPAHLVVIKSTMHY--VGGACEEYSEADLLQMIGRAGRPQFDTTATAVIMTRPQTKDKY 408
Query: 895 LSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLA 954
+ ++ IES + L + LNAEIVL T+ + A +WI T+LYIR L+NP YG
Sbjct: 409 MHFLSGLDCIESSLHTNLVEHLNAEIVLHTISDVNMALDWIRSTFLYIRALKNPKHYGFP 468
Query: 955 PEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTIS 1014
PEV K I + +L L NL+ D + T+ G++ + Y ++ T+
Sbjct: 469 PEVDKCGIET--KLQELCLKNLNSLASFNLITMDEDIN-IKPTETGKLMARYCVAFDTVK 525
Query: 1015 TYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKL-LDR----VPIPVKESLEE 1069
++ + T EL + S ++EF + +R +E+ L L D+ + P++ ++
Sbjct: 526 QFSM-VTGTETLPELIEMISKAKEFSDMQLRVNERKTLNTLNKDKNRTTIRFPIEGKIKS 584
Query: 1070 PSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEK--AL 1127
K+N L+QA + + ++ L D I ++A R+ R L E + + A + AL
Sbjct: 585 NDMKVNCLIQAQLGCIPIQEFGLIQDTGKIFRNAVRVSRYLTEFLCHHSKSNFAAQLNAL 644
Query: 1128 NLSKMVTKRMWSVQTPL--RQFNGIPNEILMKLEKKDFA-WERYYDLSPQELGELI--RF 1182
L+K ++W +P +Q I + L + + SP+EL ELI R
Sbjct: 645 ILAKCFRAKLWE-NSPYISKQLERIGLSLATALVNAGLTTFSKIEQTSPREL-ELIVNRH 702
Query: 1183 PKMGRTLHKFVHQFPK 1198
P G + + + + P+
Sbjct: 703 PPFGNQIKEAISKLPR 718
>UNIPROTKB|A6NGI5 [details] [associations]
symbol:HFM1 "Probable ATP-dependent DNA helicase HFM1"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00973
GO:GO:0008026 EMBL:BX323048 EMBL:AC098691 HGNC:HGNC:20193
HOGENOM:HOG000293238 HOVERGEN:HBG103774 ChiTaRS:HFM1
IPI:IPI00852573 ProteinModelPortal:A6NGI5 STRING:A6NGI5
Ensembl:ENST00000370424 ArrayExpress:A6NGI5 Bgee:A6NGI5
Uniprot:A6NGI5
Length = 1114
Score = 726 (260.6 bits), Expect = 7.0e-69, P = 7.0e-69
Identities = 224/700 (32%), Positives = 355/700 (50%)
Query: 550 NYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKW 608
N KIVY+AP+KAL ++ + + + +EL+GD + +I+ II+TTPEKW
Sbjct: 9 NIKIVYMAPIKALCSQRFDDWKEKFGPIGLNCKELTGDTVMDDLFEIQHAHIIMTTPEKW 68
Query: 609 DIITRKSGDRTYTQLVKXXXXXXXXXXXX-NRGPVLESIVAR--TVRQIETTKEH----- 660
D +TRK D + QLV+ NRGP LE +V+R TV+ + T ++
Sbjct: 69 DSMTRKWRDNSLVQLVRLFLIDEVHIVKDENRGPTLEVVVSRMKTVQSVSQTLKNTSTAI 128
Query: 661 -IRLVGLSATLPNYEDVALFLRVNLEKGL-FYFDNSYRPVPLSQQYIGIQVKKPLQRFQL 718
+R V +SAT+PN ED+A +L + D S+RPV L + +G F+
Sbjct: 129 PMRFVAVSATIPNAEDIAEWLSDGERPAVCLKMDESHRPVKLQKVVLGFPCSSNQTEFKF 188
Query: 719 MNDLCYEKVVAV----AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSR 774
L Y K+ +V + + L+F +RK + A + L D +F+ +
Sbjct: 189 DLTLNY-KIASVIQMYSDQKPTLVFCATRKGVQQAA-----SVLVKDA--KFIMTVE-QK 239
Query: 775 EILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGV 834
+ LQ + V+ + L+D+L G A HHAGM DR++VE F G + VL +T+TLA GV
Sbjct: 240 QRLQKYAYSVRDSKLRDILKDGAAYHHAGMELSDRKVVEGAFTVGDLPVLFTTSTLAMGV 299
Query: 835 NLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYY 894
NLPAH V+IK T Y G + E S DI+QM+GRAGRPQ+D+ +I+T S Y
Sbjct: 300 NLPAHLVVIKSTMHY--AGGLFEEYSETDILQMIGRAGRPQFDTTATAVIMTRLSTRDKY 357
Query: 895 LSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLA 954
+ ++ + +ES L + LNAEIVL T+ + A WI T LYIR L+NP+ YG A
Sbjct: 358 IQMLACRDTVESSLHRHLIEHLNAEIVLHTITDVNIAVEWIRSTLLYIRALKNPSHYGFA 417
Query: 955 PEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTIS 1014
+ K+ I + +L L +L+K D F+ T+ GR+ ++YYI+ T+
Sbjct: 418 SGLNKDGIEA--KLQELCLKNLNDLSSLDLIKMDEGVN-FKPTEAGRLMAWYYITFETVK 474
Query: 1015 T-YNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLL---DRVPI--PVKESLE 1068
Y K T+ D L L + +EF + +R +EK L L +R+ I P++ ++
Sbjct: 475 KFYTISGKETLSD--LVTLIAGCKEFLDIQLRINEKKTLNTLNKDPNRITIRFPMEGRIK 532
Query: 1069 EPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVL--KRGWAQLAEKA 1126
K+N L+QA + + ++ +LT D I + R+ R L + V ++ +A L +
Sbjct: 533 TREMKVNCLIQAQLGCIPIQDFALTQDTAKIFRHGSRITRWLSDFVAAQEKKFAVLLN-S 591
Query: 1127 LNLSKMVTKRMWSVQTPL-RQFNGIPNEILMKLEKKDF-AWERYYDLSPQELGELI--RF 1182
L L+K ++W + +Q I + + ++++ + +EL ELI R
Sbjct: 592 LILAKCFRCKLWENSLHVSKQLEKIGITLSNAIVNAGLTSFKKIEETDAREL-ELILNRH 650
Query: 1183 PKMGRTLHKFVHQFPKLILAAHVQPITR---TVLKVELTI 1219
P G + + V PK L V+ ITR T ++ +T+
Sbjct: 651 PPFGTQIKETVMYLPKYELK--VEQITRYSDTTAEILVTV 688
>TAIR|locus:2089144 [details] [associations]
symbol:RCK "ROCK-N-ROLLERS" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0003678 "DNA
helicase activity" evidence=ISS] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA;IMP] [GO:0051026 "chiasma assembly"
evidence=IMP] [GO:0000911 "cytokinesis by cell plate formation"
evidence=RCA] [GO:0006302 "double-strand break repair"
evidence=RCA] [GO:0006312 "mitotic recombination" evidence=RCA]
[GO:0007062 "sister chromatid cohesion" evidence=RCA] [GO:0007067
"mitosis" evidence=RCA] [GO:0007129 "synapsis" evidence=RCA]
[GO:0010564 "regulation of cell cycle process" evidence=RCA]
[GO:0042138 "meiotic DNA double-strand break formation"
evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 InterPro:IPR004179
Pfam:PF02889 SMART:SM00973 eggNOG:COG1204 GO:GO:0007131
GO:GO:0008026 GO:GO:0051026 KO:K15271 EMBL:AY822649 EMBL:AY960701
IPI:IPI00517826 RefSeq:NP_189410.2 UniGene:At.53523
ProteinModelPortal:Q5D892 SMR:Q5D892 STRING:Q5D892 PRIDE:Q5D892
EnsemblPlants:AT3G27730.1 GeneID:822395 KEGG:ath:AT3G27730
TAIR:At3g27730 HOGENOM:HOG000029933 InParanoid:Q5D892 OMA:IMTRRET
PhylomeDB:Q5D892 ProtClustDB:CLSN2699173 Genevestigator:Q5D892
Uniprot:Q5D892
Length = 1133
Score = 723 (259.6 bits), Expect = 1.8e-68, P = 1.8e-68
Identities = 232/843 (27%), Positives = 409/843 (48%)
Query: 476 LIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQ 535
L +S++P + AF N +QS + S N+++ APTG+GKT + L IL+
Sbjct: 6 LKSVSDLPGNFRSAFS-FRYFNSLQSECFPLCFHSDINMIISAPTGSGKTVLFELCILRL 64
Query: 536 LALNRNDDGSFNHSN--YKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGD-QTLTR 592
+ + + +GSF H+ K VY++P KALV E + + + + + + EL+GD +T +
Sbjct: 65 FSKSISKEGSFLHAKGALKTVYISPSKALVQEKLRDWNQKFNSWGISCLELTGDNETYST 124
Query: 593 QQIEETQIIVTTPEKWDIITR---KSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVAR 649
+ I++ II+TTPEK+D ++R SG + + RG LE+IV+R
Sbjct: 125 KNIQDADIILTTPEKFDAVSRYRVTSGGLGFFSDIALVLIDEVHLLNDPRGAALEAIVSR 184
Query: 650 -----TVRQIET-TKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQ 703
+ ++ + T +RL+ +SAT+PN ED+A +L+V G+ F RPV L+ +
Sbjct: 185 LKILSSNHELRSSTLASVRLLAVSATIPNIEDLAEWLKVPTA-GIKRFGEEMRPVKLTTK 243
Query: 704 YIGIQVKKPLQRFQL-MNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDT 762
G K F+ + + Y+ ++ + L+F +RK + A+ + TA+
Sbjct: 244 VFGYAAAKNDFLFEKRLQNYIYDILMQYSKGKSALVFCSTRKGAQEAAQKLAQTAMTYGY 303
Query: 763 LGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQ 822
F+K E L+ + M ++ + G H+ G+ + DR LVE LF +G +Q
Sbjct: 304 SNPFIKSRE-QLERLREASPMCSDKQMQSYILQGVGYHNGGLCQKDRSLVEGLFLNGDIQ 362
Query: 823 VLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEG 882
V+ +T TLA G+NLPAHTV+IK TQ +N EKG + E ++QM GRAGRP +D G
Sbjct: 363 VICTTNTLAHGINLPAHTVVIKSTQHFNKEKGHYMEYDRSTLLQMSGRAGRPPFDDTGMV 422
Query: 883 IIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYI 942
II+T + Y +L+N +ESQ + L + L AEIV T+ + A W+ +YLY+
Sbjct: 423 IIMTRRETVHLYENLLNGCEVVESQLLPCLIEHLTAEIVQLTISDITRAIEWMKCSYLYV 482
Query: 943 RMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRI 1002
RM +NP Y + + K+ + + +L L + ++ D + + GR+
Sbjct: 483 RMKKNPENYAIKKGIPKDRVE--KHLQELCLQKINELSQYQMIWTDTDGFVLKPEEPGRL 540
Query: 1003 ASYYYISHGTISTYNEHLKPTMGDI-ELCRLFSLSEEFKYVTVRQDEKMEL----AKLLD 1057
+ YY+ T+ Y + PT + E + +EE ++ +R++EK L A
Sbjct: 541 MTKYYLKFETMK-YIINT-PTSYSLDEALHIVCHAEEISWIQLRRNEKKTLNDVNADKEG 598
Query: 1058 RVPIPV-------KESLEEPSAKINVLLQAYIS-QLKLEGLSLTSDMVFITQSAGRLLRA 1109
R+ + K+ ++ K+ VL +++ + LS+T D I + R+ R
Sbjct: 599 RLRFHINDNKGKRKKRIQTREEKLFVLANDWLTGDPSVHDLSMTQDANSICSNGSRIARC 658
Query: 1110 LFE-IVLKRGWAQLAEKALNLSKMVTKRMWSVQTP--LRQFNGIPNEILMKLEKKDF-AW 1165
+ E + K+ + L L+K + +++W +P L+Q GI L ++
Sbjct: 659 MKEYFIYKKNYKGTLSSTL-LAKSLYQKLWD-DSPYLLKQLPGIGMVTAKALHSMGVRSF 716
Query: 1166 ERYYDLSPQELGELI---RFPKMGRTLHKFVHQFP-KL-ILAAHVQPITRTVLKVELTIT 1220
E + P+ + E++ ++P G T+ + + P K+ I V + + K+ +T++
Sbjct: 717 EALAEADPRRI-EIVTGRKYP-FGNTIKESLSSLPPKVEIKVEEVDCQKQGISKLAVTLS 774
Query: 1221 --PDFLWDDKVHGYVEPFWVIVEDNDGEYILH-HEYFMLKKQYIEEDHSLNFTVPIYEPL 1277
L K H Y + ++ ++ E ++H HE + ED S ++V +
Sbjct: 775 RVSQPLQSTKRH-YAD----LIVGSEEENLIHFHEKIRM------EDFSSPYSVTVLLER 823
Query: 1278 PPQ 1280
P Q
Sbjct: 824 PHQ 826
>UNIPROTKB|G4N3Z7 [details] [associations]
symbol:MGG_05900 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001650 InterPro:IPR003583 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00278 SMART:SM00382 SMART:SM00490 GO:GO:0005524
EMBL:CM001233 GO:GO:0003677 GO:GO:0006281 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 KO:K15271 RefSeq:XP_003711726.1
ProteinModelPortal:G4N3Z7 EnsemblFungi:MGG_05900T0 GeneID:2684075
KEGG:mgr:MGG_05900 Uniprot:G4N3Z7
Length = 1508
Score = 664 (238.8 bits), Expect = 1.7e-61, P = 1.7e-61
Identities = 225/735 (30%), Positives = 356/735 (48%)
Query: 497 NRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYV 556
N VQS+ + S + DN+++ APTG+GKT + L I + L++N D N+K++YV
Sbjct: 255 NAVQSKSFASVYKTNDNVVVSAPTGSGKTAIFELAICK--LLSQNTD-----QNFKVIYV 307
Query: 557 APMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLT-RQQIEETQIIVTTPEKWDIITRKS 615
AP KAL +E + ++ + ++ EL+GD T ++ QIIVTTPEK D ITR+
Sbjct: 308 APTKALCSERARDWESKFRHLNLTSAELTGDTFSTDMSRVRAAQIIVTTPEKLDSITRRW 367
Query: 616 GD-RTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYE 674
D R LV+ RG LE ++ R Q+ +IR+V LSAT+PN E
Sbjct: 368 EDYRKLLDLVQLVLIDEVHFLKDTRGATLEVLICRMKTQVS----NIRVVALSATVPNSE 423
Query: 675 DVALFL-RVNLEKG----LFYFDNSYRPVPLSQQYIGIQVKKPLQRF--QLMNDLCYEKV 727
DVA +L R N + L F +RPV L + G+ +F QL LC E +
Sbjct: 424 DVAKWLGRGNTDNHQPARLETFGEEFRPVRLQKHVYGLHCSGNAFQFEPQLDTKLC-EVI 482
Query: 728 VAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSN 787
+ K +++F +RK TA+ + + + +D + +M +N
Sbjct: 483 TTHSQKKPIIVFCFTRKSCELTAKKLSQLWIS-------MADDK--KPWPGPGQNMKVTN 533
Query: 788 D-LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGT 846
D L+ ++ G A HHAG+ + DR VE + +G + V+ T+TL+ GVNLP HTVI+KGT
Sbjct: 534 DGLQQVMQQGVAFHHAGLEQQDRLAVEKAYLEGKLHVICCTSTLSVGVNLPCHTVILKGT 593
Query: 847 QIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT-GHSELRYYLSLMNQQLPIE 905
+ + G E S L+++QMLGRAGRPQ+D+ II+T ++ RY Q+ +E
Sbjct: 594 MGF--QDGKLLEYSDLEVVQMLGRAGRPQFDNSAVAIILTRSETKARYEAMASGTQV-LE 650
Query: 906 SQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLK-EDITL 964
S L LN+EI LGT+++ A W+ T+L +R+ NP+ Y + + E + +
Sbjct: 651 STLHHNLIHHLNSEICLGTIRSLDSAKEWLKSTFLGVRLHANPSHYKIDSQSPNGEKLHV 710
Query: 965 GERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTM 1024
G D+ +L L+++D + + T GR S Y I T+ + PT
Sbjct: 711 GRSIDDMCEREINLLQEAKLIRFD--NNVLECTTAGRSMSEYMIRFETMKMILD--MPTG 766
Query: 1025 GDI-ELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPI---PVK-ESLEEPSAKINVLLQ 1079
I ++ + +EEFK + ++ +E+ L + L+ P V+ + + E K+ +++Q
Sbjct: 767 TKIHDILMTLAKAEEFKDLRIKSNERA-LYRTLNESPFIRYQVRAKDITEAWHKVFIIVQ 825
Query: 1080 AYIS-----QLKLEGLSLTSDMVF-IT--QSAGR---LLRALFEIVLKRGWAQLAEKALN 1128
+ K + S S F IT Q + R LLR + + ++ AL
Sbjct: 826 LDLGGGDFPSPKSDTSSSVSKNHFNITKRQVSDRMKWLLRCVIDCKGAERDSETVNNALE 885
Query: 1129 LSKMVTKRMWS-VQTPLRQFNGIPNEILMKLEKK---DFAWERYYDLSPQELGELIRFPK 1184
L + + W + + L Q GI + KL + A R D E L R P
Sbjct: 886 LLRSINAGGWEGLPSQLLQVPGIGPVSMRKLTTHGITNMASLREADYMAIE-NILTRKPP 944
Query: 1185 MGRTLHKFVHQFPKL 1199
G+ L + FPKL
Sbjct: 945 FGKNLMDTMKTFPKL 959
>UNIPROTKB|B4E0P5 [details] [associations]
symbol:SNRNP200 "U5 small nuclear ribonucleoprotein 200 kDa
helicase" species:9606 "Homo sapiens" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR001650
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0030529 GO:GO:0004386 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 EMBL:AC021188 UniGene:Hs.246112
HGNC:HGNC:30859 ChiTaRS:SNRNP200 EMBL:AK303465 IPI:IPI00927472
SMR:B4E0P5 STRING:B4E0P5 Ensembl:ENST00000429650
HOGENOM:HOG000031250 HOVERGEN:HBG078981 Uniprot:B4E0P5
Length = 595
Score = 633 (227.9 bits), Expect = 6.2e-61, P = 6.2e-61
Identities = 167/561 (29%), Positives = 288/561 (51%)
Query: 651 VRQIETTKEH-IRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQV 709
+R I + E IR+V LS++L N +DVA +L + F F + RPVPL G +
Sbjct: 1 MRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATS-TFNFHPNVRPVPLELHIQGFNI 59
Query: 710 KKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKE 769
R M Y + + K V++FV SRK+T TA I T + RFL
Sbjct: 60 SHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLH- 118
Query: 770 DSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTAT 829
++++ + + + + LK+ L G H G++ +R+LVE LF G +QV+V++ +
Sbjct: 119 -CTEKDLIP-YLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRS 176
Query: 830 LAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS 889
L WG+N+ AH VII TQ YN + A+ + D++QM+G A RP D G +I+ S
Sbjct: 177 LCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGS 236
Query: 890 ELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPA 949
+ ++ + + LP+ES + D NAEIV T++N ++A +++ +T+LY RM +NP
Sbjct: 237 KKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPN 296
Query: 950 LYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYIS 1009
Y L + L + ++LV + L+++ + + + + +LG IA+YYYI+
Sbjct: 297 YYNLQGISHRH---LSDHLSELVEQTLSDLEQSKCISIEDEMDVAPL-NLGMIAAYYYIN 352
Query: 1010 HGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKE-SLE 1068
+ TI ++ L L + S + E++ + +R E L +L +VP +
Sbjct: 353 YTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFN 412
Query: 1069 EPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALN 1128
+P K N+LLQA++S+++L L SD I A RL++A +++ GW A A+
Sbjct: 413 DPHVKTNLLLQAHLSRMQLSA-ELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAME 471
Query: 1129 LSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDL---SPQELGELIRFPKM 1185
L++MVT+ MWS + L+Q +E + + K E +D+ +E L++
Sbjct: 472 LAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGV--ESVFDIMEMEDEERNALLQLTDS 529
Query: 1186 G-RTLHKFVHQFPKLILAAHV 1205
+ +F +++P + L+ V
Sbjct: 530 QIADVARFCNRYPNIELSYEV 550
>SGD|S000003220 [details] [associations]
symbol:HFM1 "Meiosis specific DNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0007129 "synapsis" evidence=IGI;IMP]
[GO:0003678 "DNA helicase activity" evidence=IDA] [GO:0007126
"meiosis" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006268 "DNA unwinding involved in
replication" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 SGD:S000003220 GO:GO:0005524
GO:GO:0005634 EMBL:BK006941 GO:GO:0046872 GO:GO:0003677 EMBL:X94357
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 GO:GO:0007131 GO:GO:0008026 GO:GO:0007129
GO:GO:0006268 KO:K15271 EMBL:Z72773 EMBL:U22156 RefSeq:NP_011263.2
ProteinModelPortal:P51979 SMR:P51979 DIP:DIP-2604N IntAct:P51979
MINT:MINT-426642 STRING:P51979 PaxDb:P51979 PeptideAtlas:P51979
EnsemblFungi:YGL251C GeneID:852641 KEGG:sce:YGL251C CYGD:YGL251c
GeneTree:ENSGT00550000074822 HOGENOM:HOG000093662 OMA:GNYECNH
OrthoDB:EOG4WWVSR NextBio:971894 Genevestigator:P51979
GermOnline:YGL251C Uniprot:P51979
Length = 1187
Score = 627 (225.8 bits), Expect = 2.9e-56, Sum P(2) = 2.9e-56
Identities = 202/647 (31%), Positives = 323/647 (49%)
Query: 531 TILQQLALNRN-DDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQT 589
T+L +LA+ R + + + +N KI+Y+AP K+L E+ N ++ V L+ D +
Sbjct: 168 TVLFELAILRLIKETNSDTNNTKIIYIAPTKSLCYEMYKNWFP--SFVNLSVGMLTSDTS 225
Query: 590 -LTRQQIEETQIIVTTPEKWDIITRKSGDRTYT-QLVKXXXXXXXXXXXXNRGPVLESIV 647
L ++ ++ II+TTPEKWD++TR+ D + +LVK RG LE I+
Sbjct: 226 FLETEKAKKCNIIITTPEKWDLLTRRWSDYSRLFELVKLVLVDEIHTIKEKRGASLEVIL 285
Query: 648 ARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN--LEKGLFYFDNSYRPVPLSQQYI 705
R + T ++IR V LSAT+PN ED+AL+L+ N L + FD SYR V L++
Sbjct: 286 TR----MNTMCQNIRFVALSATVPNIEDLALWLKTNNELPANILSFDESYRQVQLTKFVY 341
Query: 706 G--IQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTL 763
G K Q+ + N E + A VLIF +R T TA+ + L N
Sbjct: 342 GYSFNCKNDFQKDAIYNSKLIEIIEKHADNRPVLIFCPTRASTISTAKFL----LNNHIF 397
Query: 764 GRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQV 823
+ K + + +D + L + + G A HHAG++ DR VE F G + +
Sbjct: 398 SKSKKRCN------HNPSDKI----LNECMQQGIAFHHAGISLEDRTAVEKEFLAGSINI 447
Query: 824 LVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883
L ST+TLA GVNLPA+ VIIKGT+ +N + E S LD++QM+GRAGRPQ++++G +
Sbjct: 448 LCSTSTLAVGVNLPAYLVIIKGTKSWNSSE--IQEYSDLDVLQMIGRAGRPQFETHGCAV 505
Query: 884 IITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIR 943
I+T + Y +L++ +ES L + L AE L TV + + A NW+ T+ Y+R
Sbjct: 506 IMTDSKMKQTYENLIHGTDVLESSLHLNLIEHLAAETSLETVYSIETAVNWLRNTFFYVR 565
Query: 944 MLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKY-DRKSGYFQVTDLGRI 1002
+NPA Y EV + + + +LD VK D +G ++ T G
Sbjct: 566 FGKNPAAY---QEVNRYVSFHSVEDSQINQFCQYLLDTLVKVKIIDISNGEYKSTAYGNA 622
Query: 1003 ASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPI- 1061
+ +YIS ++ + + K + + L + SEEF + VR +EK +L K ++ P+
Sbjct: 623 MTRHYISFESMKQFI-NAKKFLSLQGILNLLATSEEFSVMRVRHNEK-KLFKEINLSPLL 680
Query: 1062 --PV----KES--LEEPSAKINVLLQAYISQLKL---EGLS-----LTSDMVFITQSAGR 1105
P K+S ++ S K+++L+Q + L+ EG S L D + + R
Sbjct: 681 KYPFLTEKKQSQIIDRVSQKVSLLIQYELGGLEFPSYEGASKLHQTLVQDKFLVFRHCFR 740
Query: 1106 LLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTP--LRQFNGI 1150
LL+ + + +++ + L L + + W TP LRQ I
Sbjct: 741 LLKCMVDTFIEKSDGTSLKNTLFLLRSLNGHCWE-NTPMVLRQLKTI 786
Score = 343 (125.8 bits), Expect = 3.7e-25, Sum P(2) = 3.7e-25
Identities = 96/284 (33%), Positives = 148/284 (52%)
Query: 474 EKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTIL 533
+K + + +P+ + FK T+ N++QS + S S +N ++ +PTG+GKT + L IL
Sbjct: 118 KKCLSTTILPDSFRGVFK-FTEFNKMQSEAFPSIYESNENCIISSPTGSGKTVLFELAIL 176
Query: 534 QQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQT-LTR 592
+ L N D + N KI+Y+AP K+L E+ N ++ V L+ D + L
Sbjct: 177 R-LIKETNSDTN----NTKIIYIAPTKSLCYEMYKNWFP--SFVNLSVGMLTSDTSFLET 229
Query: 593 QQIEETQIIVTTPEKWDIITRKSGDRTYT-QLVKXXXXXXXXXXXXNRGPVLESIVARTV 651
++ ++ II+TTPEKWD++TR+ D + +LVK RG LE I+ R
Sbjct: 230 EKAKKCNIIITTPEKWDLLTRRWSDYSRLFELVKLVLVDEIHTIKEKRGASLEVILTR-- 287
Query: 652 RQIETTKEHIRLVGLSATLPNYEDVALFLRVN--LEKGLFYFDNSYRPVPLSQQYIG--I 707
+ T ++IR V LSAT+PN ED+AL+L+ N L + FD SYR V L++ G
Sbjct: 288 --MNTMCQNIRFVALSATVPNIEDLALWLKTNNELPANILSFDESYRQVQLTKFVYGYSF 345
Query: 708 QVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTAR 751
K Q+ + N E + A VLIF +R T TA+
Sbjct: 346 NCKNDFQKDAIYNSKLIEIIEKHADNRPVLIFCPTRASTISTAK 389
Score = 37 (18.1 bits), Expect = 2.9e-56, Sum P(2) = 2.9e-56
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 371 TRATAKERQKNLEKSIREEARRLK 394
T+ T+K +LE++ EEA++ K
Sbjct: 86 TQVTSKLFDHDLEQTPDEEAKKPK 109
>ASPGD|ASPL0000030426 [details] [associations]
symbol:AN5514 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003678 "DNA helicase activity" evidence=IEA] [GO:0007129
"synapsis" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IEA] [GO:0006268 "DNA unwinding involved in
replication" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 EMBL:BN001305 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 eggNOG:COG1204 EMBL:AACD01000094 GO:GO:0008026
KO:K15271 OrthoDB:EOG4WWVSR RefSeq:XP_663118.1
ProteinModelPortal:Q5B1R6 EnsemblFungi:CADANIAT00003572
GeneID:2871792 KEGG:ani:AN5514.2 HOGENOM:HOG000216651
Uniprot:Q5B1R6
Length = 1385
Score = 358 (131.1 bits), Expect = 7.4e-52, Sum P(2) = 7.4e-52
Identities = 111/358 (31%), Positives = 173/358 (48%)
Query: 476 LIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQ 535
L+ + E+P+ +P F N VQS+ + + S DN+++ APTG+GKT V L I +
Sbjct: 231 LLSVRELPDNYRPLFN-FPVFNAVQSKCFHAIYKSDDNVVIAAPTGSGKTVVMELAICRL 289
Query: 536 LALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ-Q 594
L + R D +K+VY AP K+L +E + + + ++ EL+GD ++
Sbjct: 290 LNI-RKD------KKFKVVYQAPTKSLCSERFRDWNQKFHALGLQCAELTGDTDHSQLGN 342
Query: 595 IEETQIIVTTPEKWDIITRKSGDRT-YTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQ 653
++ QIIVTTPEKWD +TRK D Q VK RG LE++V+R
Sbjct: 343 VQNRQIIVTTPEKWDSMTRKWKDHIRLMQPVKLFLIDEVHTLKEARGATLEAVVSR---- 398
Query: 654 IETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLF-----YFDNSYRPVPLSQQYIGIQ 708
+++ ++R V LSAT+PN ED+A +L N +F +RPV L + G
Sbjct: 399 MKSIGSNVRFVALSATIPNSEDIATWLGRNATSQHVPAHREHFGEEFRPVKLQKFVYGYH 458
Query: 709 VKKPLQRF-QLMNDLCYEKVVAV-AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRF 766
F +L+N ++ + K ++IF +R T TA+ + + L R
Sbjct: 459 FSGNNFAFDKLLNS----NIIGTHSAKKPIMIFCSTRNSTVSTAKELARLWSMSSRLVRM 514
Query: 767 LKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVL 824
K ++ + VK DLK G A HHAG+ DR LVE+ + G + V+
Sbjct: 515 WK--GPNKPL------PVKHADLKVTTAAGVAFHHAGLETEDRHLVENGYLQGKISVI 564
Score = 278 (102.9 bits), Expect = 7.4e-52, Sum P(2) = 7.4e-52
Identities = 105/421 (24%), Positives = 187/421 (44%)
Query: 854 GAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLA 913
G E S L++MQMLGRAGRPQ+D +I+T + +Y L++ +ES L
Sbjct: 567 GCGQEYSDLEVMQMLGRAGRPQFDDSATAVILTRKERVSHYERLVSGSESVESSLHLNLI 626
Query: 914 DQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVH 973
+ LNAEI LG +++ + A +W+ T+L +R+ RNP Y L + D E +
Sbjct: 627 EHLNAEIGLGNIKSTESAASWLAGTFLSVRLRRNPTHYRLKEGANRNDTN--EMLRHICE 684
Query: 974 TAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLF 1033
+L LV D +S + T G S Y I + T+ T + +KP ++ +
Sbjct: 685 KDIKLLQEYALV--DTES--LKSTPFGYAMSRYSIRYETMKTLIK-MKPKSDIAQILAII 739
Query: 1034 SLSEEFKYVTVRQDEKMELAKLLDR---VPIPVKESLEEPSAKINVLLQAYIS------- 1083
+EEF+ + + EK+ L K ++R + P++ + P+ KI++L+Q+ +
Sbjct: 740 CQAEEFRDIRFKAGEKL-LYKEINRSKDIRFPIEVDIVLPAHKISLLIQSELGAVEFPSG 798
Query: 1084 -QLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQT 1142
Q + + + + R++R + + + AL L++ + R+W +
Sbjct: 799 EQFQKHRFTFQQEKSTVFAHVNRVIRCIIDCQAHLKDSVTLCNALGLARSLAARVWD-HS 857
Query: 1143 P--LRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGE--LIRFPKMGRTLHKFVHQFPK 1198
P ++Q + + KL + S L + L + G L K + FPK
Sbjct: 858 PFQMKQIEKLNATAVRKLVAHGIDSIVALEKSKPHLIDIALSKNQAFGTRLQKHLANFPK 917
Query: 1199 LILAA-------HVQPITRTVLKVELTITPDFLWDDKVHGYVE--PFWV--IVEDNDGEY 1247
L ++ H P R K E+ F+ ++K + + P +V + E +DG
Sbjct: 918 LRVSVKMTGKDIHPGPFVRVNFKAEIA----FM-NEKCPVFFQGRPVYVCFVAETSDGHL 972
Query: 1248 I 1248
I
Sbjct: 973 I 973
Score = 42 (19.8 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 746 TAKTARAIRDTALENDTLGRFLKEDSVSREIL--QSHTDMVKSNDLKD 791
T KT R+ LE + S RE+ ++ T+ S+DL +
Sbjct: 170 TGKTDAIFRNRDLEAQKMTEIFHPQSTDREVQHDRTSTNPATSHDLAE 217
>UNIPROTKB|F1RYR3 [details] [associations]
symbol:LOC100517018 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00700000104562
InterPro:IPR004179 Pfam:PF02889 SMART:SM00973 GO:GO:0008026
EMBL:CU104757 Ensembl:ENSSSCT00000004816 Uniprot:F1RYR3
Length = 391
Score = 537 (194.1 bits), Expect = 1.3e-50, P = 1.3e-50
Identities = 101/215 (46%), Positives = 148/215 (68%)
Query: 1087 LEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQ 1146
++ SL SD ++ Q+A R++RALFEI L++ W + + LNLSK++ KR+W +PLRQ
Sbjct: 1 MDSFSLISDSAYVAQNAARIVRALFEIALRKRWPAMTYRLLNLSKVIDKRLWGWTSPLRQ 60
Query: 1147 FNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQ 1206
F+ +P IL +LE+K+ ++ D+ E+G ++ +G + + VHQ P + + A +Q
Sbjct: 61 FSVLPPHILTRLEEKNLTVDKLKDMRKDEIGHILHHVNIGLKVKQCVHQIPSVTMEASIQ 120
Query: 1207 PITRTVLKVELTITPDFLWDDKVHGYV-EPFWVIVEDNDGEYILHHEYFM-LKKQYI-EE 1263
PITRTVL+V L+I PDF W+D+VHG V EP+W+ VED ++I H EYF+ LKKQ I +E
Sbjct: 121 PITRTVLRVTLSICPDFTWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFLVLKKQVISKE 180
Query: 1264 DHSLNFTVPIYEPLPPQYFIRVVSDKWLGV-LVCV 1297
L FT+PI+EPLP QY+IR VSD+WLG VC+
Sbjct: 181 AQLLVFTIPIFEPLPSQYYIRAVSDRWLGAEAVCI 215
Score = 198 (74.8 bits), Expect = 2.6e-12, P = 2.6e-12
Identities = 54/159 (33%), Positives = 88/159 (55%)
Query: 472 PNEKLIKISEMPEWAQ--PAFKGM---TQLNRVQSRVYKSALSSADNILLCAPTGAGKTN 526
P+ +L+ + +P A A++ + + N VQ++++ + + N+LL APTG+GKT
Sbjct: 229 PHTELLDLQPLPVTALGCEAYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTV 288
Query: 527 VAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVRELS 585
A L I + N+ + K VY+AP+KALV E + + R++ KV EL+
Sbjct: 289 AAELAIFR--VFNK-------YPTSKAVYIAPLKALVRERMDDWKVRIEEKLGKKVIELT 339
Query: 586 GDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLV 624
GD T + I + +IVTTPEKWD ++R +R Y + V
Sbjct: 340 GDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRNYVKQV 378
>UNIPROTKB|F1SU36 [details] [associations]
symbol:SNRNP200 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR001650 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0004386 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 GeneTree:ENSGT00640000091272 EMBL:CU896688
Ensembl:ENSSSCT00000008906 OMA:QSSKKEF Uniprot:F1SU36
Length = 553
Score = 525 (189.9 bits), Expect = 2.5e-49, P = 2.5e-49
Identities = 128/431 (29%), Positives = 229/431 (53%)
Query: 780 HTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAH 839
+ + + + LK+ L G H G++ +R+LVE LF G +QV+V++ +L WG+N+ AH
Sbjct: 17 YLEKLGDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAH 76
Query: 840 TVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMN 899
VII TQ YN + A+ + D++QM+GRA RP D G +I+ S+ ++ +
Sbjct: 77 LVIIMDTQYYNGKIHAYVDYPIYDVLQMVGRANRPLQDDEGRCVIMCQGSKKDFFKKFLY 136
Query: 900 QQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLK 959
+ LP+ES + D NAEIV T++N ++A +++ +T+LY RM +NP Y L +
Sbjct: 137 EPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHR 196
Query: 960 EDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEH 1019
L + ++LV + L+++ + + + + +LG IA+YYYI++ TI ++
Sbjct: 197 H---LSDHLSELVEQTLSDLEQSKCISIEDEMDVAPL-NLGMIAAYYYINYTTIELFSMS 252
Query: 1020 LKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKE-SLEEPSAKINVLL 1078
L L + S + E++ + +R E L +L +VP + +P K N+LL
Sbjct: 253 LNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLL 312
Query: 1079 QAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMW 1138
QA++S+++L L SD I A RL++A +++ GW A A+ L++MVT+ MW
Sbjct: 313 QAHLSRMQLSA-ELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMW 371
Query: 1139 SVQTPLRQFNGIPNEILMKLEKKDFAWERYYDL---SPQELGELIRFPKMG-RTLHKFVH 1194
S + L+Q +E + + K E +D+ +E L++ + +F +
Sbjct: 372 SKDSYLKQLPHFTSEHIKRCTDKGV--ESVFDIMEMEDEERNALLQLSDSQIADVARFCN 429
Query: 1195 QFPKLILAAHV 1205
++P + L+ V
Sbjct: 430 RYPNIELSYEV 440
>UNIPROTKB|I3LAH4 [details] [associations]
symbol:I3LAH4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR001650 Pfam:PF00271
GO:GO:0005524 GO:GO:0003676 GO:GO:0004386
GeneTree:ENSGT00640000091272 EMBL:CU104757
Ensembl:ENSSSCT00000025204 OMA:FMKEGSA Uniprot:I3LAH4
Length = 197
Score = 471 (170.9 bits), Expect = 1.5e-43, P = 1.5e-43
Identities = 92/185 (49%), Positives = 123/185 (66%)
Query: 661 IRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMN 720
IR++GLSATLPNY DVA FL VN GLFYFD +RPVPL Q ++G++ +Q+ M+
Sbjct: 2 IRILGLSATLPNYLDVATFLHVNPCIGLFYFDGRFRPVPLGQTFLGVKSANKVQQLNNMD 61
Query: 721 DLCYEKVVA-VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQS 779
++CYE V+ V HQV++FVH+R T +TA ++ + A N + FL +
Sbjct: 62 EVCYESVLKQVKAGHQVMVFVHARNATVRTAMSLIERAKNNGQISYFLPTQGPEYGHAEK 121
Query: 780 HTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAH 839
++ +++L P GF+IHHAGM R DR LVE LF +GH++VLV TATLAWGVNLPAH
Sbjct: 122 QVQKSRNKQVRELFPDGFSIHHAGMLRQDRNLVESLFSNGHIKVLVCTATLAWGVNLPAH 181
Query: 840 TVIIK 844
VIIK
Sbjct: 182 AVIIK 186
>UNIPROTKB|I3LT20 [details] [associations]
symbol:LOC100525691 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
GeneTree:ENSGT00640000091272 GO:GO:0008026 EMBL:CU896688
Ensembl:ENSSSCT00000023488 Uniprot:I3LT20
Length = 354
Score = 443 (161.0 bits), Expect = 1.5e-40, P = 1.5e-40
Identities = 75/109 (68%), Positives = 93/109 (85%)
Query: 1183 PKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVED 1242
PKMG+T+HK+VH FPKL L+ H+QPITR+ LKVELTITPDF WD+KVHG E FW++VED
Sbjct: 2 PKMGKTIHKYVHLFPKLELSVHLQPITRSTLKVELTITPDFQWDEKVHGSSEAFWILVED 61
Query: 1243 NDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWL 1291
D E ILHHEYF+LK +Y +++H + F VP++EPLPPQYFIRVVSD+WL
Sbjct: 62 VDSEVILHHEYFLLKAKYAQDEHLITFFVPVFEPLPPQYFIRVVSDRWL 110
Score = 242 (90.2 bits), Expect = 1.1e-17, P = 1.1e-17
Identities = 70/215 (32%), Positives = 114/215 (53%)
Query: 472 PNEKLIKISEMPEWA--QPAFKGMTQ-----LNRVQSRVYKSALSSADNILLCAPTGAGK 524
P +L+ + +P A AF+ + Q N +Q++V+ + +S DN+ + APTG+GK
Sbjct: 131 PPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGK 190
Query: 525 TNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVRE 583
T A IL+ L +N +G + VY+ PM+AL +V + + Q + KV
Sbjct: 191 TICAEFAILRMLL--QNSEG-------RCVYITPMEALAEQVYMDWYEKFQDRLNKKVVL 241
Query: 584 LSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVL 643
L+G+ + + + + II++TPEKWDI++R+ R Q + GPVL
Sbjct: 242 LTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVL 301
Query: 644 ESIVARTVRQIETTKEH-IRLVGLSATLPNYEDVA 677
E I +R +R I + E IR+V LS++L N +DVA
Sbjct: 302 EVICSR-MRYISSQIERPIRIVALSSSLSNAKDVA 335
>UNIPROTKB|I3LAA7 [details] [associations]
symbol:I3LAA7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192
GeneTree:ENSGT00700000104562 GO:GO:0008026
Ensembl:ENSSSCT00000023674 OMA:ENDQDET Uniprot:I3LAA7
Length = 268
Score = 335 (123.0 bits), Expect = 5.2e-29, P = 5.2e-29
Identities = 91/245 (37%), Positives = 131/245 (53%)
Query: 580 KVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXXNR 639
KV EL+GD T + I + +IVTTPEKWD ++R +R Y + V R
Sbjct: 15 KVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRNYVKQVTILIIDEIHLLGEER 74
Query: 640 GPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVP 699
GPVLE IV+RT T++ +R+VGLS L N D+A +L + + GLF F S RPVP
Sbjct: 75 GPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLADWLNIR-QMGLFNFRPSVRPVP 133
Query: 700 LSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTA-RAIRDTAL 758
L G + R MN ++ + + + VLIFV SR++T TA I A
Sbjct: 134 LEVHIQGFPGQHYCPRMASMNKPTFQAIRSHSPAKPVLIFVSSRRQTRLTALELIAFLAT 193
Query: 759 ENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGD 818
E D ++L D RE +++ ++ ++LK L +G +HHAG+ DR+ VE+LF +
Sbjct: 194 EEDPK-QWLNMDE--RE-MENIIGTIRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVN 249
Query: 819 GHVQV 823
VQV
Sbjct: 250 CKVQV 254
>UNIPROTKB|I3LVA7 [details] [associations]
symbol:I3LVA7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192
GeneTree:ENSGT00700000104562 GO:GO:0008026 EMBL:CU468078
Ensembl:ENSSSCT00000024341 Uniprot:I3LVA7
Length = 119
Score = 324 (119.1 bits), Expect = 7.8e-28, P = 7.8e-28
Identities = 64/110 (58%), Positives = 82/110 (74%)
Query: 600 IIVTTPEKWDIITRKS-GDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTK 658
++VTTPEKWD++TRKS GD +Q+VK +RGPVLESIVART+RQ+E+T+
Sbjct: 1 MLVTTPEKWDVVTRKSVGDVALSQIVKLLILDEVHLLHEDRGPVLESIVARTLRQVESTQ 60
Query: 659 EHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQ 708
IR++GLSATLPNY DVA FL VN GLFYFD +RPVPL Q ++G++
Sbjct: 61 SMIRILGLSATLPNYLDVATFLHVNPCIGLFYFDGRFRPVPLGQTFLGVK 110
>MGI|MGI:2176740 [details] [associations]
symbol:Helq "helicase, POLQ-like" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006259 "DNA metabolic process" evidence=ISO] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0017116 "single-stranded
DNA-dependent ATP-dependent DNA helicase activity" evidence=ISO]
[GO:0017117 "single-stranded DNA-dependent ATP-dependent DNA
helicase complex" evidence=ISO] InterPro:IPR001650
InterPro:IPR010995 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2176740 GO:GO:0005524
GO:GO:0005730 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG1204 GeneTree:ENSGT00640000091272
SUPFAM:SSF47794 GO:GO:0017116 CTD:113510 OMA:SRPLENC
OrthoDB:EOG4THVSJ EMBL:BC082601 EMBL:BC109169 EMBL:BC109170
EMBL:AK052427 EMBL:AF436846 IPI:IPI00226287 IPI:IPI00886160
IPI:IPI00890018 RefSeq:NP_001074576.1 UniGene:Mm.21469
ProteinModelPortal:Q2VPA6 SMR:Q2VPA6 STRING:Q2VPA6
PhosphoSite:Q2VPA6 PRIDE:Q2VPA6 Ensembl:ENSMUST00000044684
GeneID:191578 KEGG:mmu:191578 UCSC:uc008yhz.1 UCSC:uc012dzs.1
HOGENOM:HOG000110747 InParanoid:Q2VPA6 NextBio:371088 Bgee:Q2VPA6
Genevestigator:Q2VPA6 GO:GO:0017117 Uniprot:Q2VPA6
Length = 1069
Score = 299 (110.3 bits), Expect = 2.4e-22, P = 2.4e-22
Identities = 146/576 (25%), Positives = 260/576 (45%)
Query: 458 EEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAF---KGMTQLNRVQSRVYK-SALSSADN 513
EEI V K P++ L +P + + KG+ +L Q ++ N
Sbjct: 256 EEISVA--KKAIESPSDDLGPFYSLPSKVRDLYVQLKGIKKLYDWQHTCLTLRSVQERKN 313
Query: 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573
++ PT GKT VA + +LQ+L + D ++ + P A+V E + +LS+
Sbjct: 314 LIYSLPTSGGKTLVAEILMLQELLCRQKD----------VLMILPYVAIVQEKISSLSSF 363
Query: 574 LQMYDVKVRELSGDQTLTR--QQIEETQIIVTTPEK-WDIITRKSGDRTYTQLVKXXXXX 630
V E +G + ++ E+ + + T EK ++ + L
Sbjct: 364 GIELGFFVEEYAGSKGRFPPIKRREKKSLYIATIEKAHSLVNALIETSRLSTLGLVVVDE 423
Query: 631 XXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLR--------- 681
+RG +LE +A+ + +TT+ ++G+SATL N ED+ FL+
Sbjct: 424 LHMIGEGSRGAILEMTLAKVLYTSKTTQ----IIGMSATLNNVEDLQAFLKAEYYTSQFR 479
Query: 682 -VNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQ-RF-QLMNDLCYEKVVA----VAGKH 734
V L++ L D Y V SQ G+ + L ++ + + + +++VA V +
Sbjct: 480 PVELKEFLKVNDTIYE-VD-SQAADGMTFSRLLSYKYSEALKKMDPDRLVALVTEVIPNY 537
Query: 735 QVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLP 794
L+F S+K A + L D L KE + L++ + LK +P
Sbjct: 538 SCLVFCPSKKNCENVAEMLCKF-LSKDYLNHREKEKCEVIKSLRNIGNGKVCPVLKRTVP 596
Query: 795 YGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKG 854
+G A HH+G+T +R+L+E+ + G + +L T+TLA GVNLPA VI++ + N
Sbjct: 597 FGIAYHHSGLTSEERKLLEEAYSTGVLCLLTCTSTLAAGVNLPARRVILRAPYVAN---- 652
Query: 855 AWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIE---SQFVSK 911
T L QM+GRAGR D+ GE I++ + + L L++ P+E S V +
Sbjct: 653 --TFLKRNQYKQMVGRAGRAGIDTAGESILLLQEKDKQQVLELISG--PLETCCSHLVEE 708
Query: 912 LADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRAD- 970
+ A + L + K A + +G Y ++ + +G+ ++L ++ +L E D
Sbjct: 709 FTKGIQA-LFLSLI-GLKIAAS-LGDIYQFM----SGTFFGVQQKILLKEKSLWEITVDA 761
Query: 971 LVH-TAATILDRNNLVKYDRKSGYFQVTDLGRIASY 1005
L H T +L +++ + +F++T LG+ AS+
Sbjct: 762 LEHLTEKGLLQKDSCGDNEGLECHFRITKLGQ-ASF 796
>UNIPROTKB|Q8TDG4 [details] [associations]
symbol:HELQ "Helicase POLQ-like" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AF436845 GO:GO:0005524
GO:GO:0005730 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG1204 GO:GO:0008026 EMBL:AK128665
EMBL:AC096768 EMBL:BC015428 EMBL:BC095473 EMBL:AL512702
IPI:IPI00152527 IPI:IPI00647582 IPI:IPI00807650 IPI:IPI00889496
RefSeq:NP_598375.2 UniGene:Hs.480101 ProteinModelPortal:Q8TDG4
SMR:Q8TDG4 IntAct:Q8TDG4 STRING:Q8TDG4 PhosphoSite:Q8TDG4
DMDM:296434521 PaxDb:Q8TDG4 PRIDE:Q8TDG4 DNASU:113510
Ensembl:ENST00000295488 GeneID:113510 KEGG:hsa:113510
UCSC:uc003hom.3 UCSC:uc003hoo.1 UCSC:uc003hop.1 CTD:113510
GeneCards:GC04M084328 HGNC:HGNC:18536 HPA:HPA036853 MIM:606769
neXtProt:NX_Q8TDG4 PharmGKB:PA164720529 InParanoid:Q8TDG4
OMA:SRPLENC OrthoDB:EOG4THVSJ PhylomeDB:Q8TDG4 GenomeRNAi:113510
NextBio:78853 ArrayExpress:Q8TDG4 Bgee:Q8TDG4 Genevestigator:Q8TDG4
Uniprot:Q8TDG4
Length = 1101
Score = 293 (108.2 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 137/542 (25%), Positives = 241/542 (44%)
Query: 490 FKGMTQLNRVQSRVYK-SALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNH 548
FKG+ +L Q +++ N++ PT GKT VA + +LQ+L R D
Sbjct: 330 FKGIEKLYEWQHTCLTLNSVQERKNLIYSLPTSGGKTLVAEILMLQELLCCRKD------ 383
Query: 549 SNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL---TRQQIEETQIIVTTP 605
++ + P A+V E + LS+ V E +G + T+++ +++ I T
Sbjct: 384 ----VLMILPYVAIVQEKISGLSSFGIELGFFVEEYAGSKGRFPPTKRREKKSLYIATIE 439
Query: 606 EKWDIITRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVG 665
+ ++ L +RG LE +A+ + +TT+ ++G
Sbjct: 440 KGHSLVNSLIETGRIDSLGLVVVDELHMIGEGSRGATLEMTLAKILYTSKTTQ----IIG 495
Query: 666 LSATLPNYEDVALFLR----------VNLEKGLFYFDNSYRPVPLSQQ---YIGIQVKKP 712
+SATL N ED+ FL+ V L++ L D Y ++ + + K
Sbjct: 496 MSATLNNVEDLQKFLQAEYYTSQFRPVELKEYLKINDTIYEVDSKAENGMTFSRLLNYKY 555
Query: 713 LQRFQLMN-DLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDS 771
+ M+ D V V + L+F S+K A I L + L KE
Sbjct: 556 SDTLKKMDPDHLVALVTEVIPNYSCLVFCPSKKNCENVAEMICKF-LSKEYLKHKEKEKC 614
Query: 772 VSREILQSHTDMVKSN---DLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTA 828
E++++ ++ N LK +P+G A HH+G+T +R+L+E+ + G + + T+
Sbjct: 615 ---EVIKNLKNIGNGNLCPVLKRTIPFGVAYHHSGLTSDERKLLEEAYSTGVLCLFTCTS 671
Query: 829 TLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888
TLA GVNLPA VI++ + A L QM+GRAGR D+ GE I+I
Sbjct: 672 TLAAGVNLPARRVILRAPYV------AKEFLKRNQYKQMIGRAGRAGIDTIGESILILQE 725
Query: 889 SELRYYLSLMNQQLPIESQFVSKLADQLNAEI--VLGTVQNAKEACNWIGYTYLYIRMLR 946
+ + L L+ + P+E+ + S L + I + ++ K A N + Y ++
Sbjct: 726 KDKQQVLELITK--PLENCY-SHLVQEFTKGIQTLFLSLIGLKIATN-LDDIYHFM---- 777
Query: 947 NPALYGLAPEVLKEDITLGERRADLVH--TAATILDRNNLVKYDRKSGY-FQVTDLGRIA 1003
N +G+ +VL ++ +L E + + T +L ++ + K + + Y F +T LGR A
Sbjct: 778 NGTFFGVQQKVLLKEKSLWEITVESLRYLTEKGLLQKDTIYKSEEEVQYNFHITKLGR-A 836
Query: 1004 SY 1005
S+
Sbjct: 837 SF 838
>ZFIN|ZDB-GENE-040724-232 [details] [associations]
symbol:si:rp71-1p14.5 "si:rp71-1p14.5" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001098 InterPro:IPR001650
InterPro:IPR002298 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482
SMART:SM00490 ZFIN:ZDB-GENE-040724-232 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00640000091272 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0003887 EMBL:CU928848
EMBL:CU695000 IPI:IPI00492363 Ensembl:ENSDART00000065556
Uniprot:F1Q4P4
Length = 2576
Score = 297 (109.6 bits), Expect = 1.3e-21, P = 1.3e-21
Identities = 128/485 (26%), Positives = 224/485 (46%)
Query: 468 KPLDPNEKLIKIS-EMPEWAQPAFK--GMTQLNRVQSRVYK-SALSSADNILLCAPTGAG 523
+P D +KL+ S +P+ ++ G+ ++ Q+ + N++ APT AG
Sbjct: 268 RPADQLDKLLLSSWGLPKPVLEKYQSLGVHRMFEWQAECLTLGKVLEGQNLVYSAPTSAG 327
Query: 524 KTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRE 583
KT V+ L IL+++ R K +++ P ++ E + L N Q ++V
Sbjct: 328 KTLVSELLILKRVLETRQ----------KAMFILPFVSVAREKMFYLQNVFQEAGIRVEG 377
Query: 584 LSGDQTLTRQQIEETQIIVTTPEKWD-IITRKSGDRTYTQLVKXXXXXXXXXXXXNRGPV 642
G T + V T EK + ++ R + L RG +
Sbjct: 378 YMGS-TSAAGGFSALDVAVCTIEKANGLVNRLIEEDKLDLLGTVVVDELHMVGDSGRGYL 436
Query: 643 LESIVARTVRQI----------ETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFD 692
LE ++ + +R I ++T ++++G+SATLPN + +A +L L +
Sbjct: 437 LELLLTK-IRYIAQKTATRNSGQSTSTGVQIIGMSATLPNLDLLARWLSAEL------YS 489
Query: 693 NSYRPVPLSQQY-IGIQVKKP----LQRFQ----LMND------LCYEKVVAVAGKHQVL 737
+YRPVPL + IG + +++F + D LC+E V H L
Sbjct: 490 TNYRPVPLMEWVKIGTNIYDGSLNLVRQFTPALPIKGDDDHIVSLCFE---TVQDGHSAL 546
Query: 738 IFVHSRKETAKTARAI-RD------TALENDTLGRF--LKEDSVSREILQ-SHTDMVKSN 787
+F S+ K A +I R+ +++ + G+ L ++ + + Q T +
Sbjct: 547 LFCPSKNWCEKLADSIGREFYNLHHKEMQSGSGGQSISLNQEGLLDVLAQLKRTPAGLDH 606
Query: 788 DLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQ 847
L+ +P+G A HHAG+T +R ++E F G+++VL +T+TL+ GVNLPA VII+ T
Sbjct: 607 VLQRTVPWGVAFHHAGLTFDERDILEGAFRQGYIRVLAATSTLSSGVNLPARRVIIR-TP 665
Query: 848 IYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQL-PIES 906
++N G ++ L QM+GRAGR D+ GE +++ +E +SL+ L PI S
Sbjct: 666 VFN---GHLLDI--LTYKQMVGRAGRKGVDTIGESVLVCKEAERAKGMSLIQGSLKPISS 720
Query: 907 QFVSK 911
V +
Sbjct: 721 CLVKR 725
Score = 231 (86.4 bits), Expect = 1.5e-14, P = 1.5e-14
Identities = 87/303 (28%), Positives = 150/303 (49%)
Query: 655 ETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQ-YIGIQ--VKK 711
++T ++++G+SATLPN + +A +L L + V + Y G V++
Sbjct: 458 QSTSTGVQIIGMSATLPNLDLLARWLSAELYSTNYRPVPLMEWVKIGTNIYDGSLNLVRQ 517
Query: 712 PLQRFQLMND------LCYEKVVAVAGKHQVLIFVHSRKETAKTARAI-RD------TAL 758
+ D LC+E V H L+F S+ K A +I R+ +
Sbjct: 518 FTPALPIKGDDDHIVSLCFE---TVQDGHSALLFCPSKNWCEKLADSIGREFYNLHHKEM 574
Query: 759 ENDTLGRF--LKEDSVSREILQ-SHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDL 815
++ + G+ L ++ + + Q T + L+ +P+G A HHAG+T +R ++E
Sbjct: 575 QSGSGGQSISLNQEGLLDVLAQLKRTPAGLDHVLQRTVPWGVAFHHAGLTFDERDILEGA 634
Query: 816 FGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQ 875
F G+++VL +T+TL+ GVNLPA VII+ T ++N G ++ L QM+GRAGR
Sbjct: 635 FRQGYIRVLAATSTLSSGVNLPARRVIIR-TPVFN---GHLLDI--LTYKQMVGRAGRKG 688
Query: 876 YDSYGEGIIITGHSELRYYLSLMNQQL-PIESQFVSKLAD-----QLNA--EIVLGTVQN 927
D+ GE +++ +E +SL+ L PI S V + + L A EI++G V +
Sbjct: 689 VDTIGESVLVCKEAERAKGMSLIQGSLKPISSCLVKREGEGVTTSMLRAILEIIVGGVAS 748
Query: 928 AKE 930
+ +
Sbjct: 749 SPQ 751
>DICTYBASE|DDB_G0279107 [details] [associations]
symbol:DDB_G0279107 "Helicase POLQ-like"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR010995
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0279107 GO:GO:0005524 GO:GO:0003676
EMBL:AAFI02000027 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
eggNOG:COG1204 SUPFAM:SSF47794 GO:GO:0008026 RefSeq:XP_641869.1
ProteinModelPortal:Q54X98 EnsemblProtists:DDB0205039 GeneID:8621875
KEGG:ddi:DDB_G0279107 InParanoid:Q54X98 OMA:LTNDERE
ProtClustDB:CLSZ2430718 Uniprot:Q54X98
Length = 1238
Score = 306 (112.8 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 114/431 (26%), Positives = 193/431 (44%)
Query: 471 DPNEKLIKISEMPEWAQPAFK--GMTQLNRVQSRVYK-SALSSADNILLCAPTGAGKTNV 527
D E +KI +P+ +K GM QL Q S L +N++ PT GKT V
Sbjct: 427 DIEECCVKIFGLPKSVGTIYKRRGMKQLYDWQKECLSDSNLLLGENLIYSLPTSGGKTLV 486
Query: 528 AVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGD 587
A + + + L + N K +++ P ++V E ++ + V G
Sbjct: 487 AEIILFRNLLIK----------NKKSLFIFPFVSIVCEKTESMHEFSSALQIPVEGYHGC 536
Query: 588 QTLTRQQIEETQIIVTTPEKWDIITRKS-GDRTYTQLVKXXXXXXXXXXXXNRGPVLESI 646
T + ++++ T EK +II + D + RG +LE +
Sbjct: 537 NG-TIPVLPGKRLLICTIEKANIIVNQLIEDGRLLDIGCVVVDEIHMIGDGERGQLLEVL 595
Query: 647 VARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIG 706
+++ + +K I+++G+SAT+PN +++ + R + +G F RPVPL++ YI
Sbjct: 596 ISKLLYM---SKGQIQIIGMSATIPNIDNLQKWFRGGVYQGTF------RPVPLTE-YIK 645
Query: 707 IQVK---------KPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTA 757
I K K LQ + + + + V KH VLIF S+ T A + +
Sbjct: 646 IGDKLYDKENNLVKSLQGTEANENHTLQLCLEVVPKHSVLIFCASKLLTVSLALQLAKS- 704
Query: 758 LENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFG 817
L E + ++++S D K ++ G A H+A +T +R+++E F
Sbjct: 705 FPQAILDNRRDEREILIQLIESSNGCKVEEDFKRMIMAGVAYHNADLTNDEREVIERGFK 764
Query: 818 DGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD 877
+ + VL +T+TL+ GVNLPA VI++ +P G L QM+GRAGR D
Sbjct: 765 ERSLLVLCATSTLSTGVNLPARRVILR-----SPRMGR-NVLDIRSYRQMVGRAGRAGID 818
Query: 878 SYGEGIIITGH 888
+GE I++ H
Sbjct: 819 EFGESILMCDH 829
Score = 40 (19.1 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 270 LQRKISQAFDQQIDPQQCQKLAEE 293
LQRK+S QQ QQ Q+ ++
Sbjct: 86 LQRKLSPPQQQQQQQQQQQQQQQQ 109
>UNIPROTKB|E9PT19 [details] [associations]
symbol:Helq "Protein Helq" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1560216
GO:GO:0005524 GO:GO:0005730 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
GO:GO:0008026 IPI:IPI00958253 Ensembl:ENSRNOT00000002974
ArrayExpress:E9PT19 Uniprot:E9PT19
Length = 879
Score = 286 (105.7 bits), Expect = 4.3e-21, P = 4.3e-21
Identities = 145/580 (25%), Positives = 259/580 (44%)
Query: 458 EEIHVPAMKHKPLD-PNEKLIKISEMPEWAQPAF---KGMTQLNRVQSRVYK-SALSSAD 512
EEI V K ++ P++ L +P + + KG+ +L Q S++
Sbjct: 252 EEISVA---RKAIESPSDDLGPFYSLPSKVRDLYAQLKGIKRLYDWQHTCLTLSSVQERK 308
Query: 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572
N++ PT GKT VA + +LQ+L + D ++ + P A+V E + +LS+
Sbjct: 309 NLIYSLPTSGGKTLVAEILMLQELLCRQKD----------VLLILPYVAIVQEKISSLSS 358
Query: 573 RLQMYDVKVRELSGDQTLTR--QQIEETQIIVTTPEKWDIITR---KSGDRTYTQLVKXX 627
V E +G + ++ E+ + + T EK + ++G LV
Sbjct: 359 FGIELGFFVEEYAGSKGRFPPIKRREKKSLYIATIEKGHSLVNALIETGRMGTLGLV--V 416
Query: 628 XXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLR------ 681
+RG LE +A+ + +TT+ ++G+SATL N ED+ FL+
Sbjct: 417 VDELHMIGEGSRGATLEMTLAKVLYTSKTTQ----IIGMSATLNNVEDLQAFLKAEYYTS 472
Query: 682 ----VNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQ-RFQ-LMNDLCYEKVVA----VA 731
V L++ L D Y V S+ G+ + L ++ + + +++VA V
Sbjct: 473 QFRPVELKEFLKVNDTIYE-VD-SRAVDGMTFSRLLNYKYSDALKKVDPDRLVALVTEVI 530
Query: 732 GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSND--- 788
+ L+F S+K A + L D L +E+ E+++S ++
Sbjct: 531 PNYSCLVFCPSKKNCENVAEMLCKF-LSRDYLNH--REEEKG-ELIKSLRNVGHGKVCPV 586
Query: 789 LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQI 848
LK +P+G A HH+G+T +R+L+E+ + G + + T+TLA GVNLPA VI++ +
Sbjct: 587 LKRTIPFGVAYHHSGLTSDERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVILRAPYV 646
Query: 849 YNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLP-IESQ 907
N T L QM+GRAGR D+ GE I++ + + L L+N L S
Sbjct: 647 AN------TFLKRNQYKQMIGRAGRAGIDTAGESILLLQEKDKQQVLGLINGPLEDCHSH 700
Query: 908 FVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGER 967
V + + + + L + + +G Y ++ N L+G+ + L + +L E
Sbjct: 701 LVEEFTKGIQS-LFLSLI--GLKIAESLGDIYQFM----NGTLFGVQQKTLLREKSLWEV 753
Query: 968 RAD-LVH-TAATILDRNNLVKYDRKSGYFQVTDLGRIASY 1005
L H T +L +++ + +F++T LG+ AS+
Sbjct: 754 TVGALEHLTEKGLLQKDSHGSPEESRCHFRITKLGQ-ASF 792
>UNIPROTKB|I3L8F4 [details] [associations]
symbol:I3L8F4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192
GeneTree:ENSGT00700000104562 GO:GO:0008026 EMBL:CU468078
Ensembl:ENSSSCT00000025178 OMA:CCILEIY Uniprot:I3L8F4
Length = 115
Score = 258 (95.9 bits), Expect = 8.6e-21, P = 8.6e-21
Identities = 50/108 (46%), Positives = 76/108 (70%)
Query: 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYK 552
M +LNR+QS V+++A ++ +N+L+CAPTGAGKTN+A+LT+L ++ G + +K
Sbjct: 1 MRRLNRIQSIVFETAYNTNENMLICAPTGAGKTNIAMLTVLHEIR-QHFQQGVIKKNEFK 59
Query: 553 IVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQI 600
IVYVAPMKAL AE+ S RL+ + V+EL+GD L++ +I TQ+
Sbjct: 60 IVYVAPMKALAAEMTNYFSKRLEPLGIVVKELTGDMQLSKNEILRTQV 107
>WB|WBGene00021905 [details] [associations]
symbol:helq-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IGI] [GO:0051117 "ATPase
binding" evidence=IPI] [GO:0017116 "single-stranded DNA-dependent
ATP-dependent DNA helicase activity" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00640000091272 GO:GO:0000712 GO:GO:0017116
OMA:SRPLENC EMBL:FO080183 RefSeq:NP_001022911.1
ProteinModelPortal:H2KY86 SMR:H2KY86 EnsemblMetazoa:Y55B1AL.3a
GeneID:175210 KEGG:cel:CELE_Y55B1AL.3 CTD:175210
WormBase:Y55B1AL.3a Uniprot:H2KY86
Length = 923
Score = 291 (107.5 bits), Expect = 2.5e-20, Sum P(2) = 2.5e-20
Identities = 128/515 (24%), Positives = 231/515 (44%)
Query: 463 PAMKHKP----LDPNEKLIKISEMPEWAQPAFKGMTQLNRV----QSRVYKSALSSADNI 514
PA + +P LDP++ L PE ++ + +L++ Q + L +N
Sbjct: 134 PAPEKRPETLTLDPSKCL------PERDMEMYRKIKKLDKFYDWQQECLSDKRLLDGENC 187
Query: 515 LLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574
+L PTGAGKT +A + +L++ + + + + V P A+V E + L+
Sbjct: 188 ILSLPTGAGKTLIAEVLMLREAIVRKRN----------AILVLPYVAIVQEKISALAPFE 237
Query: 575 QMYDVKVRELSGDQTLTR--QQIEETQIIVTTPEKWD-----IITRKSGDRTYTQLVKXX 627
+ + + E + ++ ++ + + V T EK + +IT+ DR +V
Sbjct: 238 DAFGINIEEYASNKGRFPPIKRRKRVSVYVATIEKANMLINSLITQGQLDRVGMVVVDEL 297
Query: 628 XXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKG 687
RG +LE ++A+ + K ++VG+SATLPN +D+ LR
Sbjct: 298 HMIGDG----GRGAILEQLLAKFLY-----KGTGQIVGMSATLPNIDDLKFALRA----- 343
Query: 688 LFYFDNSYRPVPLSQQYIGI-----QVKK----------PLQRFQLMND--LCYEKVVAV 730
F + ++RPV L++ ++ I QV + P + + +C + + +
Sbjct: 344 -FVYSTNFRPVELTE-FVKIGQTMHQVSENGDLNPAGDLPTNNLKSTDPDGIC-QLLAKL 400
Query: 731 AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLK 790
K+ +IF ++K A I T + + + D+ + L + D LK
Sbjct: 401 IPKNSAVIFCPNKKNCENVAVLIAKTLPAHIRQAKRAESDAFLQSYLSDNDDERMDAVLK 460
Query: 791 DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYN 850
+ G A HH+G+T+ +R+ VE F +G + V+ +T+TLA GVNLP VIIK +
Sbjct: 461 QCILSGVAYHHSGLTQDERKCVEAAFMEGLIYVVCATSTLAAGVNLPVRRVIIKAPMV-G 519
Query: 851 PEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI-IITGHSELRYYLSLMNQQLP-IESQF 908
E+ L +QM GRAGR +D+ G+ I II E R++ ++ +P S
Sbjct: 520 RER-----LGKAQYLQMAGRAGRAGFDTKGDCITIIKAGEEERWFREMLKSDIPRCMSSL 574
Query: 909 VSK--LADQLNAEIVLGTVQNAKEACNWIGYTYLY 941
S+ + + +VL +N +E + Y+ Y
Sbjct: 575 SSEESMGSFILDCVVLKLAENIEEIMTAVRYSLFY 609
Score = 41 (19.5 bits), Expect = 2.5e-20, Sum P(2) = 2.5e-20
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 95 TYQPKTKETRAAYEAMLSVIQQQLGGQPL--NIVSGAAD--EILAVLKNDAVKNPD 146
T P K RA E+ ++ IQQ++G L + +S AD A L N++ + D
Sbjct: 63 TSPPARK--RALEESTVTPIQQKIGPPVLKRSSLSKLADGFRTAAYLNNESENDDD 116
>UNIPROTKB|E1BMC0 [details] [associations]
symbol:POLQ "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043142 "single-stranded DNA-dependent ATPase activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001098
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
SUPFAM:SSF53098 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00640000091272 GO:GO:0008026 GO:GO:0003887
GO:GO:0043142 EMBL:DAAA02001581 EMBL:DAAA02001582 EMBL:DAAA02001583
IPI:IPI00687324 Ensembl:ENSBTAT00000002501 OMA:CFSDESI
Uniprot:E1BMC0
Length = 2728
Score = 203 (76.5 bits), Expect = 4.6e-20, Sum P(3) = 4.6e-20
Identities = 69/203 (33%), Positives = 102/203 (50%)
Query: 722 LCYEKVVAVAGKHQVLIFVHSRKETAKTARAI-RD----------TAL-ENDTLGRFLKE 769
LCYE V H VL+F S+K K A I R+ T L + L + E
Sbjct: 461 LCYE---TVRDNHSVLLFCPSKKWCEKLADIIAREFYSLHHQAEVTGLVRSSELPPVMLE 517
Query: 770 DSVSREILQSHTDMVKSND--LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVST 827
E++ D L+ +P+G A HHAG+T +R ++E F G ++VL +T
Sbjct: 518 QKGLLEVMDQLKRSPSGLDSVLQKTVPWGVAFHHAGLTFEERDIIEGAFRQGQIRVLAAT 577
Query: 828 ATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYG---EGII 884
+TL+ GVNLPA VII+ T I++ G ++ L QM+GRAGR D+ G E I+
Sbjct: 578 STLSSGVNLPARRVIIR-TPIFS---GRLLDI--LTYKQMVGRAGRKGVDTVGNTGESIL 631
Query: 885 ITGHSELRYYLSLMNQQL-PIES 906
+ +SE ++L+ L P+ S
Sbjct: 632 VCKNSEKSKGITLLQGSLKPVHS 654
Score = 142 (55.0 bits), Expect = 4.6e-20, Sum P(3) = 4.6e-20
Identities = 78/268 (29%), Positives = 116/268 (43%)
Query: 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572
N++ APT AGKT VA L IL+++ R K +++ P ++ E L +
Sbjct: 242 NLVYSAPTSAGKTLVAELLILKRVLEMRK----------KALFILPFVSVAKEKKYYLQS 291
Query: 573 RLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWD-IITRKSGDRTYTQLVKXXXXXX 631
Q +KV G + TR I V T E+ + +I R + L
Sbjct: 292 LFQEVGIKVDGYMGSTSPTRH-FSSLDIAVCTIERANGLINRLIEENKMDLLGMVVVDEL 350
Query: 632 XXXXXXNRGPVLESIVART--VRQIETT---------KEHIRLVGLSATLPNYEDVALFL 680
+RG +LE ++ + + Q + +++VG+SATLPN E VA +L
Sbjct: 351 HMLGDSHRGYLLELLLTKICYITQKSASCQADLAIPLSNAVQIVGMSATLPNLELVASWL 410
Query: 681 RVNLEKGLFYFDNSYRPVPLSQQY-IGIQV----KKPLQRFQLM----ND------LCYE 725
N E L++ D +RPVPL + IG + K ++ FQ M D LCYE
Sbjct: 411 --NAE--LYHTD--FRPVPLLESIKIGNSIYDSSMKLVREFQPMLQVKGDEDHVVSLCYE 464
Query: 726 KVVAVAGKHQVLIFVHSRKETAKTARAI 753
V H VL+F S+K K A I
Sbjct: 465 ---TVRDNHSVLLFCPSKKWCEKLADII 489
Score = 55 (24.4 bits), Expect = 7.8e-05, Sum P(3) = 7.8e-05
Identities = 32/147 (21%), Positives = 62/147 (42%)
Query: 784 VKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGV--NLPAHTV 841
+K ND + F + G++ R+ V++ DG VQ ++ G+ N P H
Sbjct: 2540 IKENDAACYID-SFKSRYTGISHFMRETVKNCKRDGFVQTILGRRRYLPGIKDNNPYHKA 2598
Query: 842 IIKGTQIYNPEKGAWTEL---SPLDIMQMLGRAGRPQYDSYG--EGIIITGHSELRYY-- 894
+ I +G+ ++ + ++I + L + S+G EG++ + + L
Sbjct: 2599 HAERQAINTRVQGSAADIVKIATVNIQKQL-ETFHSTFKSHGHREGLLQSERTGLGLLPK 2657
Query: 895 LSLMNQQLPIESQF-VSKLADQLNAEI 920
L PI F + +L D+L E+
Sbjct: 2658 KKLQGMFCPIRGGFFILQLHDELLYEV 2684
Score = 52 (23.4 bits), Expect = 4.6e-20, Sum P(3) = 4.6e-20
Identities = 23/91 (25%), Positives = 45/91 (49%)
Query: 1019 HLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKE-----SLEEPSAK 1073
HL TM D++ R + S +K+ Q+ +++ + + +K+ SL E A
Sbjct: 1087 HLPDTMQDLDKSREHTDSFYYKFQDGNQECHHSISRGKKQASLSIKKGKLGTSLNEGKAS 1146
Query: 1074 INVLLQAYISQ-LKLEGLSLTSDMVF-ITQS 1102
+ +++ S+ K E L+ +S+ V I+QS
Sbjct: 1147 TSKVVRTLSSRKTKREALNFSSEKVSTISQS 1177
Score = 51 (23.0 bits), Expect = 7.8e-05, Sum P(3) = 7.8e-05
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 754 RDTALENDTLGRFLKEDSVSREILQSHTDMVKSN 787
R+ + ND LG L S S+ ++Q+ T +V N
Sbjct: 1260 RNNKIPNDILGEHLITGSQSKHVIQA-TSVVSEN 1292
Score = 43 (20.2 bits), Expect = 6.3e-18, Sum P(4) = 6.3e-18
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 1024 MGDIELCRLFSLSEEFKYVTVRQD 1047
+G IE C ++ L EF +T D
Sbjct: 716 LGAIEACVMWLLENEFIQITEASD 739
Score = 38 (18.4 bits), Expect = 6.3e-18, Sum P(4) = 6.3e-18
Identities = 8/31 (25%), Positives = 19/31 (61%)
Query: 1064 KESLEEPSAKINVLLQAYISQLKLEGLSLTS 1094
KE+L++ K+ + Q ++ L+L G+ ++
Sbjct: 2200 KENLQDVFYKVEMPSQYCLALLELNGIGFST 2230
>UNIPROTKB|F1NMU1 [details] [associations]
symbol:POLQ "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0006281 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
GO:GO:0008026 GO:GO:0003887 GO:GO:0043142 EMBL:AADN02037908
IPI:IPI00584654 Ensembl:ENSGALT00000024072 Uniprot:F1NMU1
Length = 904
Score = 212 (79.7 bits), Expect = 5.6e-20, Sum P(3) = 5.6e-20
Identities = 73/204 (35%), Positives = 102/204 (50%)
Query: 722 LCYEKVVAVAGKHQVLIFVHSRKETAKTARAI-RDT-ALENDTLGRFLKEDSVS-----R 774
LCYE V H VL+F S+ K A I R+ +L+ G K S+S R
Sbjct: 294 LCYE---TVCDGHSVLLFCPSKNWCEKLADIIAREFYSLQQAEKGS-AKNSSLSPVVVDR 349
Query: 775 EILQSHTDMVKSN----D--LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTA 828
E + D ++ + D L+ LP+G A HHAG+T +R ++E F ++VL +T+
Sbjct: 350 EGIDEVLDQLRRSLSGLDSVLQRTLPWGVAFHHAGLTFDERDIIEGAFRQSTIRVLAATS 409
Query: 829 TLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888
TL+ GVNLPA VII+ P G T L L QM GRAGR D+ GE I++
Sbjct: 410 TLSSGVNLPARRVIIR-----TPMFGG-TLLDVLTYKQMAGRAGRKGVDTEGESILVCKP 463
Query: 889 SELRYYLSLMNQQL-PIESQFVSK 911
SE +L+ L P+ S + K
Sbjct: 464 SERSKGTALLQGSLKPVRSCLLRK 487
Score = 119 (46.9 bits), Expect = 5.6e-20, Sum P(3) = 5.6e-20
Identities = 89/340 (26%), Positives = 141/340 (41%)
Query: 447 EGSQRFTNKGY-EEIHVPAMKHKPLDPNEKLIKIS-EMPEWAQPAFK--GMTQLNRVQSR 502
E S R + KG ++++VP D +KL+ S +P+ + G+ Q+ Q+
Sbjct: 10 EVSLRCSAKGQCQQVNVPE------DQADKLLLASWGLPKAVLEKYHSLGVVQMFEWQAE 63
Query: 503 -VYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561
+ + N++ APT AGKT VA L IL+++ R K +++ P +
Sbjct: 64 CLMLGQVLEGKNLVYSAPTSAGKTLVAELLILKRVLETRK----------KALFILPFVS 113
Query: 562 LVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWD-IITRKSGDRTY 620
+ E L Q D++V G + + + V T EK + +I R +
Sbjct: 114 VAKEKKCYLQALFQEVDMRVGGYMGSIS-PAGRFSLLDVAVCTIEKANGLINRLIEENQM 172
Query: 621 TQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQI------ETTKEH------IRLVGLSA 668
L +RG +LE ++ + VR I TK I++VG+SA
Sbjct: 173 DSLGVVVVDELHMLGDSHRGYLLELLLTK-VRYITEKAAKRKTKMKSPGFGGIQVVGMSA 231
Query: 669 TLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQY-IG-------IQVKKPLQ-RFQLM 719
TLPN +A +L L + +RPVPL + IG + + + Q + QL
Sbjct: 232 TLPNLGLLASWLDAEL------YCTDFRPVPLKEWVKIGNNIYDSSMNLVREFQPKLQLK 285
Query: 720 ND------LCYEKVVAVAGKHQVLIFVHSRKETAKTARAI 753
D LCYE V H VL+F S+ K A I
Sbjct: 286 GDEDHVVSLCYE---TVCDGHSVLLFCPSKNWCEKLADII 322
Score = 48 (22.0 bits), Expect = 5.6e-20, Sum P(3) = 5.6e-20
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 1018 EHLKPTMGDIELCRLFSLSEEFKYVTVRQDEK 1049
E K G IE C + L EF V R D+K
Sbjct: 538 EQDKVQTGPIEACIAWLLENEFIQVLERADDK 569
>UNIPROTKB|F1RVE2 [details] [associations]
symbol:HELQ "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR010995
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00640000091272 SUPFAM:SSF47794 GO:GO:0008026
OMA:SRPLENC EMBL:CU467102 EMBL:CU468150 Ensembl:ENSSSCT00000010115
Uniprot:F1RVE2
Length = 1103
Score = 288 (106.4 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 150/579 (25%), Positives = 258/579 (44%)
Query: 458 EEIHVP----AMKHKPLDPNEKL-IKISEMPEWAQPAFKGMTQLNRVQSRVYK-SALSSA 511
EEI+V A L P L K+ ++ +AQ F+G+ +L Q ++
Sbjct: 299 EEINVAKKTIASSSDDLGPFYSLPSKVRDL--YAQ--FRGIEKLYEWQHTCLTLKSVQER 354
Query: 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571
N++ PT GKT VA + +LQ+L R D + + P A+V E + LS
Sbjct: 355 KNLIYSLPTSGGKTLVAEILMLQELLCRRKD----------ALMILPYVAIVQEKIAGLS 404
Query: 572 NRLQMYDVKVRELSGDQTLTR--QQIEETQIIVTTPEKWDIITR---KSGDRTYTQLVKX 626
+ V E +G + ++ E+ + + T EK + ++G LV
Sbjct: 405 SFGIELGFFVEEYAGSKGKFPPIKRREKKSLYIATIEKGHSLVNSLIETGRIGGLGLV-- 462
Query: 627 XXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLR----- 681
+RG LE +A+ + +TT+ +VG+SATL N ED+ FLR
Sbjct: 463 VVDELHMIGEGSRGATLEMTLAKILYTSKTTQ----IVGMSATLNNVEDLQAFLRAEYYS 518
Query: 682 -----VNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQ-RFQ-LMNDLCYEKVVA----V 730
V L++ L D Y ++ G+ + L ++ + L + +VA V
Sbjct: 519 SWFRPVELKEYLKINDTIYEVDSKAEN--GMTFSRLLNYKYSDTLKKLDPDHLVALVTEV 576
Query: 731 AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLK 790
H L+F ++K A I L + L KE + L++ + LK
Sbjct: 577 IPNHSCLVFCPTKKNCENVAEMICKI-LSKEYLKHREKEKHELLKNLKAISGGSVCPVLK 635
Query: 791 DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYN 850
+P+G A HH+G+T +R+L+E+ G + +L T+TLA GVNLPA VI++ +
Sbjct: 636 HTIPFGVAYHHSGLTNDERKLLEEAHSAGVLCLLTCTSTLAAGVNLPAQRVILRAPYV-- 693
Query: 851 PEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVS 910
A L QM+GRAGR DS GE I+I + + L L+++ P+E+ + S
Sbjct: 694 ----AKEFLKRNQYKQMIGRAGRAGIDSVGESILIFQEKDKQQVLELISR--PLENCY-S 746
Query: 911 KLADQLNAEI-VLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRA 969
+L + I L + +G Y ++ + +G+ ++L ++ +L E
Sbjct: 747 RLVQEFTKGIQTLFLSLIGLKIATTLGDIYHFM----SGTFFGVQQKILLKEKSLWEITV 802
Query: 970 DLVH--TAATILDRNNLVKYDRKSGY-FQVTDLGRIASY 1005
+ + T +L ++ ++ + + Y F++T LGR AS+
Sbjct: 803 ESLRYLTEKGLLQKDTVLGSEEEFQYSFRITKLGR-ASF 840
Score = 38 (18.4 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 445 LPEGSQRFTNKGYEEIHVPAMKHKPLDPN 473
+PE + T+ E++ ++KH L N
Sbjct: 134 IPEQEEHATDHAPEDLCSESIKHSILSSN 162
>UNIPROTKB|J9P160 [details] [associations]
symbol:HELQ "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
GO:GO:0008026 CTD:113510 EMBL:AAEX03016730 RefSeq:XP_544959.2
Ensembl:ENSCAFT00000044378 GeneID:487837 KEGG:cfa:487837
Uniprot:J9P160
Length = 1072
Score = 285 (105.4 bits), Expect = 4.6e-19, Sum P(2) = 4.6e-19
Identities = 135/542 (24%), Positives = 241/542 (44%)
Query: 490 FKGMTQLNRVQSRVYK-SALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNH 548
FKG+ +L Q +++ N++ PT GKT VA + +LQ+L R D
Sbjct: 302 FKGIEKLYEWQHTCLTLNSVQERKNLIYSLPTSGGKTLVAEILMLQELLCRRRD------ 355
Query: 549 SNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTR--QQIEETQIIVTTPE 606
++ + P A+V E + LS+ V E +G + ++ + + + T E
Sbjct: 356 ----VLMILPYVAIVQEKISGLSSFGIELGFFVEEYAGSKGKFPPIKRRGKKSLYIATIE 411
Query: 607 KWDIITRKSGDR-TYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVG 665
K + + + + L +RG +LE +A+ + +TT+ ++G
Sbjct: 412 KGNSLVNSLIETGRISSLGLVVVDELHMIGEGSRGAILEMTLAKVLYTSKTTQ----IIG 467
Query: 666 LSATLPNYEDVALFLR----------VNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQR 715
+SATL N ED+ FL+ V L++ L D Y ++ + Q
Sbjct: 468 MSATLTNVEDLQKFLQAEYYTSQFRPVELKEYLKINDAIYEVDSKAENGMTFSRLLNCQY 527
Query: 716 FQLMNDLCYEKVVAVAGK----HQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDS 771
+ + + +VA+A + H L+F ++K A I L L KE
Sbjct: 528 SDTLKKMDPDHLVALATEVIPNHSCLVFCPTKKNCENVAEMIC-RFLSKQYLKHREKE-- 584
Query: 772 VSREILQSHTDMVKSN---DLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTA 828
E++++ ++ N LK +P+G A HH+G+T +R+L+E+ + G + + T+
Sbjct: 585 -KHEVIKNLKNISSGNLCPILKRTIPFGVAYHHSGLTSDERKLLEEAYSTGVLCLFTCTS 643
Query: 829 TLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888
TLA GVNLPA VI++ + A L QM+GRAGR DS GE I+I
Sbjct: 644 TLAAGVNLPARRVILRAPYV------AKEFLKRNQYKQMIGRAGRAGIDSIGESILILQE 697
Query: 889 SELRYYLSLMNQQLPIESQFVSKLADQLNAEI--VLGTVQNAKEACNWIGYTYLYIRMLR 946
+ + L L+++ P+E+ + S L + I + ++ K A N +Y M
Sbjct: 698 KDKQQVLELISR--PLENCY-SHLVQEFTKGIQTLFLSLIGLKIATN---LDDIYHFMCG 751
Query: 947 NPALYGLAPEVLKEDITLGERRADLVH--TAATILDRNNLVKYDRKSGY-FQVTDLGRIA 1003
+G+ ++L ++ +L + + + T +L ++ + K + Y F +T LGR A
Sbjct: 752 T--FFGVQQKILLQEKSLWDITIESLRYLTEKGLLQKDTIDKPKEEIQYSFHITKLGR-A 808
Query: 1004 SY 1005
S+
Sbjct: 809 SF 810
Score = 37 (18.1 bits), Expect = 4.6e-19, Sum P(2) = 4.6e-19
Identities = 4/20 (20%), Positives = 13/20 (65%)
Query: 335 CTRLARAQDQEERKKIEEEM 354
C+++ + ++ RK ++E +
Sbjct: 222 CSKVGTSSEENRRKSLKEHL 241
>UNIPROTKB|E2RST3 [details] [associations]
symbol:HELQ "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
GO:GO:0008026 OMA:SRPLENC EMBL:AAEX03016730
Ensembl:ENSCAFT00000014486 Uniprot:E2RST3
Length = 1106
Score = 285 (105.4 bits), Expect = 5.1e-19, Sum P(2) = 5.1e-19
Identities = 135/542 (24%), Positives = 241/542 (44%)
Query: 490 FKGMTQLNRVQSRVYK-SALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNH 548
FKG+ +L Q +++ N++ PT GKT VA + +LQ+L R D
Sbjct: 336 FKGIEKLYEWQHTCLTLNSVQERKNLIYSLPTSGGKTLVAEILMLQELLCRRRD------ 389
Query: 549 SNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTR--QQIEETQIIVTTPE 606
++ + P A+V E + LS+ V E +G + ++ + + + T E
Sbjct: 390 ----VLMILPYVAIVQEKISGLSSFGIELGFFVEEYAGSKGKFPPIKRRGKKSLYIATIE 445
Query: 607 KWDIITRKSGDR-TYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVG 665
K + + + + L +RG +LE +A+ + +TT+ ++G
Sbjct: 446 KGNSLVNSLIETGRISSLGLVVVDELHMIGEGSRGAILEMTLAKVLYTSKTTQ----IIG 501
Query: 666 LSATLPNYEDVALFLR----------VNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQR 715
+SATL N ED+ FL+ V L++ L D Y ++ + Q
Sbjct: 502 MSATLTNVEDLQKFLQAEYYTSQFRPVELKEYLKINDAIYEVDSKAENGMTFSRLLNCQY 561
Query: 716 FQLMNDLCYEKVVAVAGK----HQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDS 771
+ + + +VA+A + H L+F ++K A I L L KE
Sbjct: 562 SDTLKKMDPDHLVALATEVIPNHSCLVFCPTKKNCENVAEMIC-RFLSKQYLKHREKE-- 618
Query: 772 VSREILQSHTDMVKSN---DLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTA 828
E++++ ++ N LK +P+G A HH+G+T +R+L+E+ + G + + T+
Sbjct: 619 -KHEVIKNLKNISSGNLCPILKRTIPFGVAYHHSGLTSDERKLLEEAYSTGVLCLFTCTS 677
Query: 829 TLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888
TLA GVNLPA VI++ + A L QM+GRAGR DS GE I+I
Sbjct: 678 TLAAGVNLPARRVILRAPYV------AKEFLKRNQYKQMIGRAGRAGIDSIGESILILQE 731
Query: 889 SELRYYLSLMNQQLPIESQFVSKLADQLNAEI--VLGTVQNAKEACNWIGYTYLYIRMLR 946
+ + L L+++ P+E+ + S L + I + ++ K A N +Y M
Sbjct: 732 KDKQQVLELISR--PLENCY-SHLVQEFTKGIQTLFLSLIGLKIATN---LDDIYHFMCG 785
Query: 947 NPALYGLAPEVLKEDITLGERRADLVH--TAATILDRNNLVKYDRKSGY-FQVTDLGRIA 1003
+G+ ++L ++ +L + + + T +L ++ + K + Y F +T LGR A
Sbjct: 786 T--FFGVQQKILLQEKSLWDITIESLRYLTEKGLLQKDTIDKPKEEIQYSFHITKLGR-A 842
Query: 1004 SY 1005
S+
Sbjct: 843 SF 844
Score = 37 (18.1 bits), Expect = 5.1e-19, Sum P(2) = 5.1e-19
Identities = 4/20 (20%), Positives = 13/20 (65%)
Query: 335 CTRLARAQDQEERKKIEEEM 354
C+++ + ++ RK ++E +
Sbjct: 256 CSKVGTSSEENRRKSLKEHL 275
>UNIPROTKB|E9PSY5 [details] [associations]
symbol:Helq "Protein Helq" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 RGD:1560216 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
IPI:IPI01007603 Ensembl:ENSRNOT00000031633 ArrayExpress:E9PSY5
Uniprot:E9PSY5
Length = 805
Score = 266 (98.7 bits), Expect = 5.3e-19, P = 5.3e-19
Identities = 124/474 (26%), Positives = 214/474 (45%)
Query: 458 EEIHVPAMKHKPLD-PNEKLIKISEMPEWAQPAF---KGMTQLNRVQSRVYK-SALSSAD 512
EEI V K ++ P++ L +P + + KG+ +L Q S++
Sbjct: 252 EEISVA---RKAIESPSDDLGPFYSLPSKVRDLYAQLKGIKRLYDWQHTCLTLSSVQERK 308
Query: 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572
N++ PT GKT VA + +LQ+L + D ++ + P A+V E + +LS+
Sbjct: 309 NLIYSLPTSGGKTLVAEILMLQELLCRQKD----------VLLILPYVAIVQEKISSLSS 358
Query: 573 RLQMYDVKVRELSGDQTLTR--QQIEETQIIVTTPEKWDIITR---KSGDRTYTQLVKXX 627
V E +G + ++ E+ + + T EK + ++G LV
Sbjct: 359 FGIELGFFVEEYAGSKGRFPPIKRREKKSLYIATIEKGHSLVNALIETGRMGTLGLV--V 416
Query: 628 XXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLR------ 681
+RG LE +A+ + +TT+ ++G+SATL N ED+ FL+
Sbjct: 417 VDELHMIGEGSRGATLEMTLAKVLYTSKTTQ----IIGMSATLNNVEDLQAFLKAEYYTS 472
Query: 682 ----VNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQ-RFQ-LMNDLCYEKVVA----VA 731
V L++ L D Y V S+ G+ + L ++ + + +++VA V
Sbjct: 473 QFRPVELKEFLKVNDTIYE-VD-SRAVDGMTFSRLLNYKYSDALKKVDPDRLVALVTEVI 530
Query: 732 GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSND--- 788
+ L+F S+K A + L D L +E+ E+++S ++
Sbjct: 531 PNYSCLVFCPSKKNCENVAEMLCKF-LSRDYLNH--REEEKG-ELIKSLRNVGHGKVCPV 586
Query: 789 LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQI 848
LK +P+G A HH+G+T +R+L+E+ + G + + T+TLA GVNLPA VI++ +
Sbjct: 587 LKRTIPFGVAYHHSGLTSDERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVILRAPYV 646
Query: 849 YNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQL 902
N T L QM+GRAGR D+ GE I++ + + L L+N L
Sbjct: 647 AN------TFLKRNQYKQMIGRAGRAGIDTAGESILLLQEKDKQQVLGLINGPL 694
>UNIPROTKB|O75417 [details] [associations]
symbol:POLQ "DNA polymerase theta" species:9606 "Homo
sapiens" [GO:0006260 "DNA replication" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IDA]
[GO:0043142 "single-stranded DNA-dependent ATPase activity"
evidence=IDA] [GO:0003684 "damaged DNA binding" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] InterPro:IPR001098
InterPro:IPR001650 InterPro:IPR002298 InterPro:IPR011545
InterPro:IPR012337 InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271
Pfam:PF00476 PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194
SMART:SM00482 SMART:SM00490 GO:GO:0005524 GO:GO:0005654
GO:GO:0003684 GO:GO:0006260 GO:GO:0006281 SUPFAM:SSF53098
EMBL:AC069239 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
eggNOG:COG1204 GO:GO:0008026 GO:GO:0003887 GO:GO:0043142
EMBL:AF052573 EMBL:AY338826 EMBL:AC079841 EMBL:AF043628
IPI:IPI00794779 IPI:IPI01012356 RefSeq:NP_955452.3
UniGene:Hs.241517 ProteinModelPortal:O75417 STRING:O75417
PhosphoSite:O75417 PaxDb:O75417 PRIDE:O75417 DNASU:10721
Ensembl:ENST00000264233 GeneID:10721 KEGG:hsa:10721 UCSC:uc003eed.3
UCSC:uc003eee.4 CTD:10721 GeneCards:GC03M121150 H-InvDB:HIX0030706
HGNC:HGNC:9186 HPA:HPA048931 MIM:604419 neXtProt:NX_O75417
PharmGKB:PA33506 HOGENOM:HOG000146444 HOVERGEN:HBG005525 KO:K02349
OrthoDB:EOG42RD6C ChEMBL:CHEMBL6025 GenomeRNAi:10721 NextBio:40701
ArrayExpress:O75417 Bgee:O75417 CleanEx:HS_POLH CleanEx:HS_POLQ
Genevestigator:O75417 GermOnline:ENSG00000051341 Uniprot:O75417
Length = 2590
Score = 218 (81.8 bits), Expect = 8.9e-19, Sum P(4) = 8.9e-19
Identities = 70/216 (32%), Positives = 108/216 (50%)
Query: 722 LCYEKVVAVAGKHQVLIFVHSRKETAKTARAI-RDTA-LENDTLGRF--------LKEDS 771
LCYE + H VL+F S+K K A I R+ L + G + E
Sbjct: 329 LCYE---TICDNHSVLLFCPSKKWCEKLADIIAREFYNLHHQAEGLVKPSECPPVILEQK 385
Query: 772 VSREILQSHTDMVKSND--LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTAT 829
E++ + D L+ +P+G A HHAG+T +R ++E F G ++VL +T+T
Sbjct: 386 ELLEVMDQLRRLPSGLDSVLQKTVPWGVAFHHAGLTFEERDIIEGAFRQGLIRVLAATST 445
Query: 830 LAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIM---QMLGRAGRPQYDSYGEGIIIT 886
L+ GVNLPA VII+ T I+ PLDI+ QM+GRAGR D+ GE I+I
Sbjct: 446 LSSGVNLPARRVIIR-TPIFGGR--------PLDILTYKQMVGRAGRKGVDTVGESILIC 496
Query: 887 GHSELRYYLSLMNQQL-PIESQFVSKLADQLNAEIV 921
+SE ++L+ L P+ S + +++ ++
Sbjct: 497 KNSEKSKGIALLQGSLKPVRSCLQRREGEEVTGSMI 532
Score = 135 (52.6 bits), Expect = 8.9e-19, Sum P(4) = 8.9e-19
Identities = 74/268 (27%), Positives = 116/268 (43%)
Query: 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572
N++ APT AGKT VA L IL+++ R K +++ P ++ E L +
Sbjct: 110 NLVYSAPTSAGKTLVAELLILKRVLEMRK----------KALFILPFVSVAKEKKYYLQS 159
Query: 573 RLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWD-IITRKSGDRTYTQLVKXXXXXX 631
Q +KV G + +R I V T E+ + +I R + L
Sbjct: 160 LFQEVGIKVDGYMGSTSPSRH-FSSLDIAVCTIERANGLINRLIEENKMDLLGMVVVDEL 218
Query: 632 XXXXXXNRGPVLESIVART---VRQ--------IETTKEHIRLVGLSATLPNYEDVALFL 680
+RG +LE ++ + R+ + +++VG+SATLPN E VA +L
Sbjct: 219 HMLGDSHRGYLLELLLTKICYITRKSASCQADLASSLSNAVQIVGMSATLPNLELVASWL 278
Query: 681 RVNLEKGLFYFDNSYRPVPLSQQY-IGIQV----KKPLQRF----QLMND------LCYE 725
N E L++ D +RPVPL + +G + K ++ F Q+ D LCYE
Sbjct: 279 --NAE--LYHTD--FRPVPLLESVKVGNSIYDSSMKLVREFEPMLQVKGDEDHVVSLCYE 332
Query: 726 KVVAVAGKHQVLIFVHSRKETAKTARAI 753
+ H VL+F S+K K A I
Sbjct: 333 ---TICDNHSVLLFCPSKKWCEKLADII 357
Score = 42 (19.8 bits), Expect = 8.9e-19, Sum P(4) = 8.9e-19
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 1120 AQLAEKALNLSKMVTKRMWSVQTPLRQ 1146
A L +L+ S + RMW +Q+ LR+
Sbjct: 1928 ASLVPPSLDPSLTLKDRMWYLQSCLRK 1954
Score = 39 (18.8 bits), Expect = 1.8e-18, Sum P(4) = 1.8e-18
Identities = 8/31 (25%), Positives = 19/31 (61%)
Query: 1064 KESLEEPSAKINVLLQAYISQLKLEGLSLTS 1094
KE+L++ K+ + Q ++ L+L G+ ++
Sbjct: 2066 KENLQDVFRKVEMPSQYCLALLELNGIGFST 2096
Score = 38 (18.4 bits), Expect = 8.9e-19, Sum P(4) = 8.9e-19
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 1024 MGDIELCRLFSLSEEFKYVTVRQD 1047
+G IE C ++ L EF T D
Sbjct: 579 LGAIEACVMWLLENEFIQSTEASD 602
Score = 37 (18.1 bits), Expect = 2.8e-18, Sum P(4) = 2.8e-18
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 1243 NDGEYILHHEYFMLKKQYIEEDHSLNFTV 1271
N Y+ HH+ + + ++ H T+
Sbjct: 1179 NQNVYMKHHDIHPINQYLRKQSHEQTSTI 1207
>UNIPROTKB|E3W980 [details] [associations]
symbol:HELQ "Helicase POLQ-like" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR001650
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0003676 GO:GO:0004386 EMBL:AC096768
HGNC:HGNC:18536 IPI:IPI00965172 ProteinModelPortal:E3W980
SMR:E3W980 Ensembl:ENST00000510985 UCSC:uc010ikb.3
ArrayExpress:E3W980 Bgee:E3W980 Uniprot:E3W980
Length = 1034
Score = 247 (92.0 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 106/390 (27%), Positives = 183/390 (46%)
Query: 638 NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLR----------VNLEKG 687
+RG LE +A+ + +TT+ ++G+SATL N ED+ FL+ V L++
Sbjct: 405 SRGATLEMTLAKILYTSKTTQ----IIGMSATLNNVEDLQKFLQAEYYTSQFRPVELKEY 460
Query: 688 LFYFDNSYRPVPLSQQ---YIGIQVKKPLQRFQLMN-DLCYEKVVAVAGKHQVLIFVHSR 743
L D Y ++ + + K + M+ D V V + L+F S+
Sbjct: 461 LKINDTIYEVDSKAENGMTFSRLLNYKYSDTLKKMDPDHLVALVTEVIPNYSCLVFCPSK 520
Query: 744 KETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSN---DLKDLLPYGFAIH 800
K A I L + L KE E++++ ++ N LK +P+G A H
Sbjct: 521 KNCENVAEMICKF-LSKEYLKHKEKEKC---EVIKNLKNIGNGNLCPVLKRTIPFGVAYH 576
Query: 801 HAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELS 860
H+G+T +R+L+E+ + G + + T+TLA GVNLPA VI++ + A L
Sbjct: 577 HSGLTSDERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVILRAPYV------AKEFLK 630
Query: 861 PLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEI 920
QM+GRAGR D+ GE I+I + + L L+ + P+E+ + S L + I
Sbjct: 631 RNQYKQMIGRAGRAGIDTIGESILILQEKDKQQVLELITK--PLENCY-SHLVQEFTKGI 687
Query: 921 --VLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVH--TAA 976
+ ++ K A N + Y ++ N +G+ +VL ++ +L E + + T
Sbjct: 688 QTLFLSLIGLKIATN-LDDIYHFM----NGTFFGVQQKVLLKEKSLWEITVESLRYLTEK 742
Query: 977 TILDRNNLVKYDRKSGY-FQVTDLGRIASY 1005
+L ++ + K + + Y F +T LGR AS+
Sbjct: 743 GLLQKDTIYKSEEEVQYNFHITKLGR-ASF 771
Score = 70 (29.7 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 490 FKGMTQLNRVQSRVYK-SALSSADNILLCAPTGAGKTNVAVLTILQQLALNRND 542
FKG+ +L Q +++ N++ PT GKT VA + +LQ+L R D
Sbjct: 330 FKGIEKLYEWQHTCLTLNSVQERKNLIYSLPTSGGKTLVAEILMLQELLCCRKD 383
Score = 41 (19.5 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
Identities = 12/51 (23%), Positives = 26/51 (50%)
Query: 516 LCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566
LC+ + K ++ + L +L +++ + N S Y+ V + P L+ +V
Sbjct: 148 LCSESIKNKLSITTIGNLTELQTDKHTE---NQSGYEGVTIEPGADLLYDV 195
>ZFIN|ZDB-GENE-060503-421 [details] [associations]
symbol:helq "helicase, POLQ-like" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR010995 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-060503-421 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00640000091272 SUPFAM:SSF47794 GO:GO:0008026
EMBL:BX649525 CTD:113510 IPI:IPI00799443 RefSeq:XP_691411.3
UniGene:Dr.86132 Ensembl:ENSDART00000109412 GeneID:562952
KEGG:dre:562952 NextBio:20884669 Uniprot:F1Q4P2
Length = 1010
Score = 248 (92.4 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 127/539 (23%), Positives = 226/539 (41%)
Query: 491 KGMTQLNRVQSRVYK-SALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHS 549
KG+ L Q ++ N++ PT GKT VA + I ++L + D
Sbjct: 252 KGIQDLYEWQKTCLSLDSIQQRRNLIYSLPTSGGKTLVAEILIFKELLCRKKD------- 304
Query: 550 NYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTR--QQIEETQIIVTTPEK 607
+ + P +LV E V LS+ D V E +G + ++ + + +TT EK
Sbjct: 305 ---ALLILPYISLVQEKVRGLSSFGIELDFLVEEYAGSKGKFPPVKRRNKNSLYITTIEK 361
Query: 608 WDIITRK--SGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVG 665
+ DR + +RG +LE +++ + ++T+ ++G
Sbjct: 362 GHSLVNSLIENDRL-DNIGLVVVDELHMLGDGSRGAILEMTLSKILYMSKSTQ----VIG 416
Query: 666 LSATLPNYEDVALFLR----------VNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQR 715
+SATL N +D+ FLR V L++ + D+ Y P + +
Sbjct: 417 MSATLGNVKDLQSFLRAENYTNNFRPVELKEYVKIKDSIYEVDPKEEACFTFSRLLNFKY 476
Query: 716 FQLMNDLCYEKVVAVAGK----HQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDS 771
M + + ++A+A + LIF ++K A I L + + E +
Sbjct: 477 SSGMQKMDPDHIIALATEVIPQQSCLIFCATKKNCENLAGMICKY-LNKEFIKHKEAEKA 535
Query: 772 VSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLA 831
+ L+S + L+ +P+G A HH+G+T +R+LVE+ + G + +L T+TLA
Sbjct: 536 ILLGELKSSGNGSLCPVLQKTIPFGLAYHHSGLTSDERKLVEEAYSSGVLCLLTCTSTLA 595
Query: 832 WGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL 891
G+NLPA VI++ + A L QM+GRAGR D+ GE I+I ++
Sbjct: 596 AGINLPARRVILRSPYV------AADFLKRSQYKQMVGRAGRAGIDAMGESILILQDKDI 649
Query: 892 RYYLSLMNQQLPIESQFVSKLADQLNA--EIVLGTVQNAKEACNWIGYTYLYIRMLRNPA 949
L+ P+E + + L D ++L + K I T ++ L
Sbjct: 650 NTAKKLLCA--PMEKCYSNLLHDGGRGLLSLILSLI-GLK-----ITTTVEQVKDLMKGT 701
Query: 950 LYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKY---DRKSGYFQVTDLGRIASY 1005
G+ + + +L + + + T L + NL++ + Q+T LGR A+Y
Sbjct: 702 FLGVQEAQVSPEKSLWDLTVESIQT----LKQKNLIEVSSDENNQNILQITRLGR-ATY 755
>UNIPROTKB|F1NYH9 [details] [associations]
symbol:HELQ "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR001650 InterPro:IPR010995
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00640000091272 SUPFAM:SSF47794 GO:GO:0008026
OMA:SRPLENC EMBL:AADN02009041 IPI:IPI00596471
Ensembl:ENSGALT00000018274 Uniprot:F1NYH9
Length = 995
Score = 248 (92.4 bits), Expect = 3.4e-15, Sum P(2) = 3.4e-15
Identities = 137/544 (25%), Positives = 239/544 (43%)
Query: 490 FKGMTQLNRVQSRVYK-SALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNH 548
F+G+ L Q +L N++ PT GKT VA + ILQ+L + D
Sbjct: 237 FRGIETLYEWQHDCLTLKSLQQRKNLIYSLPTSGGKTLVAEILILQELLCRQKD------ 290
Query: 549 SNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL---TRQQIEETQIIVTTP 605
++ + P A+V E V LS+ V E +G + +++I+++ + + T
Sbjct: 291 ----VLMILPYVAIVQEKVWGLSSFGIELGFLVEEYAGSKGRFPPIKRRIKKS-LYIATI 345
Query: 606 EKWDIITRK--SGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRL 663
EK + DR L +RG VLE +A+ + + T H+
Sbjct: 346 EKGHALVNSLIETDRI-DDLGLVVVDELHMIGEGSRGAVLEMTLAKILYASKNT--HV-- 400
Query: 664 VGLSATLPNYEDVALFLR----------VNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713
VG+SATL N D+ FL+ V L++ + D Y ++ G + L
Sbjct: 401 VGMSATLNNVGDLQKFLQAEYYTKNFRPVELKEYIKIRDTIYEVDSKAEN--GFTFSR-L 457
Query: 714 QRFQLMNDLCY---EKVVA----VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRF 766
F+ + L + +VA V K+ LIF ++K A + L +
Sbjct: 458 LNFKYSSSLEKADPDHIVALVTEVIPKYSCLIFCPTKKNCENVATMVCKY-LNKEFRAHR 516
Query: 767 LKEDSVSREILQSHTDMVKSND---LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQV 823
KE ++++++ D+ + L+ +P+G A HH+G+T +R+ +E+ + G + +
Sbjct: 517 EKE---KQDLIKNLKDIGNGSICPVLRQTIPFGVAYHHSGLTNDERKSIEEAYSRGVLCL 573
Query: 824 LVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883
L TATLA GVNLPA VI++ + A L QM+GRAGR D+ GE I
Sbjct: 574 LACTATLAAGVNLPARRVILRAPYV------ASEFLKKNQYKQMIGRAGRAGIDNAGESI 627
Query: 884 IITGHSELRYYLSLMNQQLPIESQFVSKLADQLNA-EIVLGTVQNAKEACNWIGYTYLYI 942
++ + L+ P+E+ + + L + + +L ++ K A + +Y
Sbjct: 628 LVVQEKDKHLVRDLITS--PLENCYSNLLPEITKGMQYLLLSLVGLKIA---VTQEEVYS 682
Query: 943 RMLRNPALYGLAPEVLKEDITLGER-RADLVHTAATILDRNNLVKYDRKSGYFQVTDLGR 1001
M L G+ ++L ++ +L E R +L + L + ++ + KS VT LG+
Sbjct: 683 FMCHT--LLGVQQQLLLKEKSLSEIVRDELENLIEKGLLKGKIMDQNSKST-LTVTLLGK 739
Query: 1002 IASY 1005
A+Y
Sbjct: 740 -ATY 742
Score = 37 (18.1 bits), Expect = 3.4e-15, Sum P(2) = 3.4e-15
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 82 RDPDADAAAASEGTYQPKTKETRAAYEAMLS----VIQQQLGGQPLNI 125
+D +A + PK +T+ EA+LS V ++ +G +I
Sbjct: 173 KDHLKNALTGNAKAQTPKVSKTKQLKEAILSEEISVARETIGSSSFDI 220
>TAIR|locus:2125677 [details] [associations]
symbol:AT4G32700 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006260 "DNA replication"
evidence=IEA;IGI] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IGI]
[GO:0009640 "photomorphogenesis" evidence=IMP] [GO:0010468
"regulation of gene expression" evidence=IGI] InterPro:IPR001098
InterPro:IPR001650 InterPro:IPR002298 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00476 PRINTS:PR00868
PROSITE:PS51194 SMART:SM00482 SMART:SM00490 GO:GO:0005524
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677 GO:GO:0006260
GO:GO:0009640 GO:GO:0006310 GO:GO:0010468 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003887 KO:K02349
OMA:EASIPEI EMBL:AB192295 IPI:IPI00570534 RefSeq:NP_001078482.1
UniGene:At.48069 ProteinModelPortal:Q588V7 SMR:Q588V7 STRING:Q588V7
PRIDE:Q588V7 EnsemblPlants:AT4G32700.2 GeneID:829406
KEGG:ath:AT4G32700 TAIR:At4g32700 HOGENOM:HOG000030860
PhylomeDB:Q588V7 ProtClustDB:CLSN2698843 Genevestigator:Q588V7
Uniprot:Q588V7
Length = 2154
Score = 253 (94.1 bits), Expect = 4.6e-15, Sum P(2) = 4.6e-15
Identities = 94/303 (31%), Positives = 152/303 (50%)
Query: 661 IRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQY-IG-------IQVKKP 712
+++VG+SAT+PN VA +L+ L + +RPVPL + +G ++V +
Sbjct: 690 LQIVGMSATMPNVGAVADWLQAAL------YQTEFRPVPLEEYIKVGSTIYNKKMEVVRT 743
Query: 713 LQRFQLMNDLCYEKVVAVAGK-----HQVLIFVHSRKETAKTARAIRDTALENDTLGRFL 767
+ + M + +V + + + VLIF SRK TAR I ++N +
Sbjct: 744 IPKAADMGGKDPDHIVELCNEVVQEGNSVLIFCSSRKGCESTARHI-SKLIKNVPVN-VD 801
Query: 768 KEDSVSREILQSHTDMVKSND------LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHV 821
E+S +I +S D ++ + L++ LP G A HHAG+T +R++VE + G V
Sbjct: 802 GENSEFMDI-RSAIDALRRSPSGVDPVLEETLPSGVAYHHAGLTVEEREIVETCYRKGLV 860
Query: 822 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGE 881
+VL +T+TLA GVNLPA VI + P G + QM GRAGR D+ G+
Sbjct: 861 RVLTATSTLAAGVNLPARRVIFR-----QPMIGR-DFIDGTRYKQMSGRAGRTGIDTKGD 914
Query: 882 GIIITGHSELRYYLSLMNQQLP-IESQFVSKLADQLNA--EIVLG-TVQNAKEACNWIGY 937
++I EL+ ++L+N+ P ++S +A E+V G VQ AK+ ++
Sbjct: 915 SVLICKPGELKRIMALLNETCPPLQSCLSEDKNGMTHAILEVVAGGIVQTAKDIHRYVRC 974
Query: 938 TYL 940
T L
Sbjct: 975 TLL 977
Score = 39 (18.8 bits), Expect = 4.6e-15, Sum P(2) = 4.6e-15
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 146 DKKKEIEKLLNPIPNHV 162
+K + +E LL P+ HV
Sbjct: 575 EKAEHLEVLLEPLGKHV 591
>UNIPROTKB|D4A4G4 [details] [associations]
symbol:Hfm1 "Protein Hfm1" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0008026 IPI:IPI00388911 Ensembl:ENSRNOT00000033855
Uniprot:D4A4G4
Length = 410
Score = 223 (83.6 bits), Expect = 4.9e-15, P = 4.9e-15
Identities = 51/148 (34%), Positives = 82/148 (55%)
Query: 479 ISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLAL 538
++E+P + FK N +QS+ + L + N ++CAPTG+GKT V L I + L
Sbjct: 263 VTEIPAKFRSVFKEFPYFNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAITRLLM- 321
Query: 539 NRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ-QIEE 597
+ N K+VY+AP+KAL ++ + + + +EL+GD + +I+
Sbjct: 322 ----EAPLPWLNMKVVYMAPIKALCSQRFDDWKEKFGPIGLTCKELTGDTVMDDLFEIQH 377
Query: 598 TQIIVTTPEKWDIITRKSGDRTYTQLVK 625
II+TTPEKWD +TRK D ++ QLV+
Sbjct: 378 ANIIMTTPEKWDSMTRKWRDNSFIQLVR 405
>WB|WBGene00020964 [details] [associations]
symbol:polq-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001098
InterPro:IPR001650 InterPro:IPR002298 InterPro:IPR011545
InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG1204
GeneTree:ENSGT00640000091272 GO:GO:0008026 GO:GO:0003887 KO:K02349
EMBL:FO081687 EMBL:FO081686 RefSeq:NP_498250.3
ProteinModelPortal:A0FLQ6 PaxDb:A0FLQ6 EnsemblMetazoa:W03A3.2
GeneID:175810 KEGG:cel:CELE_W03A3.2 UCSC:W03A3.2 CTD:175810
WormBase:W03A3.2 InParanoid:A0FLQ6 OMA:EASIPEI NextBio:889766
Uniprot:A0FLQ6
Length = 1661
Score = 258 (95.9 bits), Expect = 5.1e-15, Sum P(3) = 5.1e-15
Identities = 101/415 (24%), Positives = 192/415 (46%)
Query: 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572
+++ APT AGK+ VA L + + R K+++V P ++ E + +
Sbjct: 46 HLIFSAPTSAGKSIVAELLSWKVASTGR-----------KVLFVLPYISVAREKLHQIQR 94
Query: 573 RLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS-GDRTYTQLVKXXXXXX 631
+ D+ V G Q E V T EK +T ++ + + ++
Sbjct: 95 CWRRDDISVCGFIGPQA---SNPNEWLGAVCTIEKAASLTNRALSEDWFEEIGMIVVDEM 151
Query: 632 XXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYF 691
+RG +E ++++ + ++ E +R++G+SAT+P + +L G F
Sbjct: 152 HMVFDSSRGAHIEHMLSKVLLWNQSALEKVRIIGMSATIPELYRIGKWL-----DGAKVF 206
Query: 692 DNSYRPVPLSQQY-IGIQVKKPLQRFQLMNDLCYEKVVAVAGKH-----QVLIFVHSRKE 745
+ +RP+ L IG +++K +++ + + ++ + + Q L+ + S+ +
Sbjct: 207 EARFRPIVLQNHIVIGSELRKSGDN-KVLREFSEDPLILLTEESFRRNSQTLVMISSKLD 265
Query: 746 TAKTARAIRDTALE-NDT---LGRFLKEDSVSREILQSHTDM--VKSNDLKDLLPYGFAI 799
KTA I E N T L LKE + ++ + K ++ L +G A
Sbjct: 266 AEKTALNIASRFHEINKTDSSLLEILKERANGLLFIKHGLERNGCKDRNVMSTLAWGVAY 325
Query: 800 HHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTEL 859
HHAG+T +R+ +E F + ++ +LV+T+TLA GVNLPA V+IK Q P + L
Sbjct: 326 HHAGLTMEERECIELGFREKNIVILVATSTLASGVNLPAERVLIKA-QPRGP-----SAL 379
Query: 860 SPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLAD 914
+ L+ QM+GRAGR + + GE ++ + L ++ + PI+ +++ D
Sbjct: 380 TSLNYRQMVGRAGRTGHATRGETYLLIKKCDRDAVLKII--ETPIDQGVLTRKRD 432
Score = 42 (19.8 bits), Expect = 5.1e-15, Sum P(3) = 5.1e-15
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 975 AATILDRNNLVKYDRKSGYFQVTDLGRIA 1003
A +L RN+ + D T LGR A
Sbjct: 477 AIEMLLRNSFISQDENDDQLSPTQLGRAA 505
Score = 39 (18.8 bits), Expect = 5.1e-15, Sum P(3) = 5.1e-15
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 265 IDAYWLQRKISQAFDQQID 283
ID Y+ ++ I FD QID
Sbjct: 17 ID-YYAEQNIKALFDWQID 34
>ASPGD|ASPL0000070749 [details] [associations]
symbol:mtr4 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0031499 "TRAMP
complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:BN001303
GO:GO:0031499 GO:GO:0043629 GO:GO:0071035 GO:GO:0071038
EMBL:AACD01000076 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000467 GO:GO:0071042 GO:GO:0071051 GO:GO:0008143
GO:GO:0034459 eggNOG:COG4581 GO:GO:0034475 GO:GO:0034476
HOGENOM:HOG000163047 KO:K12598 OMA:ENFQKAM InterPro:IPR025696
Pfam:PF13234 OrthoDB:EOG4S1XG7 GO:GO:0071049 RefSeq:XP_662016.1
ProteinModelPortal:Q5B4W8 STRING:Q5B4W8
EnsemblFungi:CADANIAT00006045 GeneID:2872204 KEGG:ani:AN4412.2
Uniprot:Q5B4W8
Length = 1073
Score = 177 (67.4 bits), Expect = 1.6e-14, Sum P(4) = 1.6e-14
Identities = 42/164 (25%), Positives = 87/164 (53%)
Query: 726 KVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKE--DSVSREILQSHTDM 783
K++ + + V++F S++E A ++ A +D+ + + +S + + ++
Sbjct: 403 KMIMLKSLNPVIVFSFSKRECEFYALKMKSLAFNDDSEKEMVSKVFNSAIEMLSEEDRNL 462
Query: 784 VKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVII 843
+ ++ LL G +HH+G+ ++ +E LF +G ++VL +T T + G+N+PA TV+
Sbjct: 463 PQIQNILPLLRRGIGVHHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPAKTVVF 522
Query: 844 KGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITG 887
+ ++ W ++P + +QM GRAGR D G I++ G
Sbjct: 523 TSVRKFDGFSQRW--VTPSEFVQMSGRAGRRGLDDRGIVIMMIG 564
Score = 78 (32.5 bits), Expect = 1.6e-14, Sum P(4) = 1.6e-14
Identities = 29/99 (29%), Positives = 49/99 (49%)
Query: 465 MKHK-PLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAG 523
++H+ + P + IS+ PA L+ Q +V S++ +++L+ A T AG
Sbjct: 121 VRHQVAIPPKYPYVPISQHKPPENPARVWPFTLDPFQ-QVAVSSIQRGESVLVSAHTSAG 179
Query: 524 KTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562
KT VA I Q L +N N +++Y +P+KAL
Sbjct: 180 KTVVAEYAIAQSL---KN--------NQRVIYTSPIKAL 207
Score = 67 (28.6 bits), Expect = 1.6e-14, Sum P(4) = 1.6e-14
Identities = 35/156 (22%), Positives = 63/156 (40%)
Query: 549 SNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW 608
+N +++Y +P+KAL + + + DV + ++GD T+ T +++TT
Sbjct: 194 NNQRVIYTSPIKALSNQKYREFA--AEFGDVGL--MTGDVTINPTA---TCLVMTTEILR 246
Query: 609 DIITRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSA 668
++ R G ++ RG V E + + +R V LSA
Sbjct: 247 SMLYR--GSEIMREVAWVVFDEIHYMRDATRGVVWEETII-------LLPDKVRYVFLSA 297
Query: 669 TLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQY 704
T+PN A ++ + +RP PL Q Y
Sbjct: 298 TIPNAMQFAEWITKMHNQPCHVVYTDFRPTPL-QHY 332
Score = 53 (23.7 bits), Expect = 1.6e-14, Sum P(4) = 1.6e-14
Identities = 25/110 (22%), Positives = 45/110 (40%)
Query: 919 EIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATI 978
EIV G A + +GY + + ++R + G++PE + E +TA
Sbjct: 574 EIVRGEQDRLNSAFH-LGYNMI-LNLMR---VEGISPEFMLERCFY-----QFQNTAGLA 623
Query: 979 LDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIE 1028
L + + K ++D G I YY I I +N+ ++ + E
Sbjct: 624 GLEKELAELEEKRANMTISDEGTIREYYDI-RTQIDQFNDDVRAVISHPE 672
>UNIPROTKB|Q10701 [details] [associations]
symbol:helY "Probable helicase HelY" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005886
GO:GO:0005524 GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842578 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG4581 PIR:G70767 RefSeq:NP_216608.1 RefSeq:NP_336620.1
RefSeq:YP_006515507.1 ProteinModelPortal:Q10701 SMR:Q10701
PRIDE:Q10701 EnsemblBacteria:EBMYCT00000003887
EnsemblBacteria:EBMYCT00000069683 GeneID:13316898 GeneID:887736
GeneID:924573 KEGG:mtc:MT2153 KEGG:mtu:Rv2092c KEGG:mtv:RVBD_2092c
PATRIC:18126496 TubercuList:Rv2092c HOGENOM:HOG000245391 KO:K03727
OMA:ANESAWQ ProtClustDB:CLSK791623 Uniprot:Q10701
Length = 906
Score = 178 (67.7 bits), Expect = 4.3e-14, Sum P(3) = 4.3e-14
Identities = 59/188 (31%), Positives = 93/188 (49%)
Query: 796 GFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGA 855
G A HHAGM R VE+LF G V+ + +T TLA G+N+PA TV+++ +N E+
Sbjct: 339 GLAAHHAGMLPAFRHTVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHM 398
Query: 856 WTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR--YYLSLMNQQ-LPIESQFVSKL 912
L+P + Q+ GRAGR D G ++I H E+ L + + P+ S F
Sbjct: 399 --PLTPGEYTQLTGRAGRRGIDVEGHAVVIW-HPEIEPSEVAGLASTRTFPLRSSF---- 451
Query: 913 ADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLV 972
A N I L ++A + ++ + R+ + GL + + + LGE A+L
Sbjct: 452 APSYNMTINLVHRMGPQQAHRLLEQSFAQYQADRS--VVGLVRGIERGNRILGEIAAELG 509
Query: 973 HTAATILD 980
+ A IL+
Sbjct: 510 GSDAPILE 517
Score = 81 (33.6 bits), Expect = 4.3e-14, Sum P(3) = 4.3e-14
Identities = 33/92 (35%), Positives = 44/92 (47%)
Query: 496 LNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVY 555
L+ Q R SAL +L+CAPTGAGKT V + LAL GS K Y
Sbjct: 18 LDDFQQRAC-SALERGHGVLVCAPTGAGKTVVGEFAV--HLALAA---GS------KCFY 65
Query: 556 VAPMKALVAEVVGNLSNRLQMYDVKVRELSGD 587
P+KAL + +L+ R + + L+GD
Sbjct: 66 TTPLKALSNQKHTDLTARYGRDQIGL--LTGD 95
Score = 64 (27.6 bits), Expect = 4.3e-14, Sum P(3) = 4.3e-14
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPV 698
RGPV E ++ + + +R+V LSAT+ N E+ +++ D +RPV
Sbjct: 142 RGPVWEEVILQL-------PDDVRVVSLSATVSNAEEFGGWIQTVRGDTTVVVDE-HRPV 193
Query: 699 PLSQQYI 705
PL Q +
Sbjct: 194 PLWQHVL 200
>UNIPROTKB|F1PXD9 [details] [associations]
symbol:POLQ "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
GO:GO:0008026 EMBL:AAEX03017021 Ensembl:ENSCAFT00000018256
OMA:NECHITF Uniprot:F1PXD9
Length = 1835
Score = 235 (87.8 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 86/289 (29%), Positives = 140/289 (48%)
Query: 654 IETTKEHIRLVG--LSATL--PNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQV 709
+ T ++ +V L+A L N+ V L V + ++ D+S + V Q +QV
Sbjct: 173 MSATLPNLEIVASWLNAELYHTNFRPVPLLESVKIGNSIY--DSSMKLVREFQP--NLQV 228
Query: 710 KKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTA--LENDTLGRFL 767
K + LCYE + H VLIF S+K K A I L + G +
Sbjct: 229 KGDEDH---VVSLCYE---TICDNHSVLIFCPSKKWCEKLADIIACEFYNLHHQATG-LV 281
Query: 768 KEDSVSREILQSH-----TDMVKSND------LKDLLPYGFAIHHAGMTRGDRQLVEDLF 816
+ + +L+ D +K + L+ +P+G A HHAG+T +R ++E F
Sbjct: 282 RSSELPPVVLEQKGLLEVMDQLKRSPSGLDSVLQKTIPWGVAFHHAGLTFEERDIIEGAF 341
Query: 817 GDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIM---QMLGRAGR 873
G ++VL +T+TL+ GVNLPA VII+ T I+ + PLDI+ QM+GRAGR
Sbjct: 342 RQGQIRVLAATSTLSSGVNLPARRVIIR-TPIFGGQ--------PLDILTYKQMVGRAGR 392
Query: 874 PQYDSYGEGIIITGHSELRYYLSLMNQQL-PIESQFVSKLADQLNAEIV 921
D+ GE I++ +SE ++L+ L P+ S + +++ A ++
Sbjct: 393 KGVDTVGESILVCKNSEKSKGIALLQGSLKPVRSCLQRQKGEEVTASMI 441
Score = 41 (19.5 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 1024 MGDIELCRLFSLSEEFKYVTVRQD 1047
+G IE C ++ L EF +T D
Sbjct: 488 LGAIEACVMWLLENEFIQITETGD 511
>ASPGD|ASPL0000004985 [details] [associations]
symbol:AN6007 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:BN001301 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000102 GO:GO:0008026 eggNOG:COG4581
HOGENOM:HOG000163048 KO:K12599 OMA:TRLDETC OrthoDB:EOG4WM82R
RefSeq:XP_663611.1 ProteinModelPortal:Q5B0C3 STRING:Q5B0C3
EnsemblFungi:CADANIAT00007011 GeneID:2871132 KEGG:ani:AN6007.2
Uniprot:Q5B0C3
Length = 1293
Score = 181 (68.8 bits), Expect = 2.0e-13, Sum P(3) = 2.0e-13
Identities = 53/157 (33%), Positives = 85/157 (54%)
Query: 738 IFVHSRKETAKTARAIRDTALEN---DTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLP 794
IFV S+K + A ++ + N +L E S++R + Q + + L++LL
Sbjct: 632 IFVFSKKRCEQNADSLSNQDFCNASEKSLIHITIEKSLTR-LKQEDRTLPQILRLRELLS 690
Query: 795 YGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKG 854
G A+HH G+ +++VE LF V+VL +T T A G+NLP TV+ G + ++ KG
Sbjct: 691 RGIAVHHGGLLPIMKEIVEILFAKTLVKVLFATETFAMGLNLPTRTVVFSGFRKHDG-KG 749
Query: 855 AWTELSPLDIMQMLGRAGRPQYDSYGEGIII-TGHSE 890
+ +L P + QM GRAGR D+ G I++ +G E
Sbjct: 750 -FRDLLPGEYTQMAGRAGRRGLDNVGYVIVVNSGKDE 785
Score = 94 (38.1 bits), Expect = 2.0e-13, Sum P(3) = 2.0e-13
Identities = 39/154 (25%), Positives = 68/154 (44%)
Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDII 611
K +Y +P+KAL + + N DV + L+GD + E + +I+TT ++
Sbjct: 367 KAIYTSPIKALSNQKFRDFKNTFD--DVGI--LTGDVQINP---EASCLIMTTEILRSML 419
Query: 612 TRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671
R G + RG V E ++ EH+ L+ LSAT+P
Sbjct: 420 YR--GADLIRDVEFVIFDEVHYVNDLERGVVWEEVIIML-------PEHVTLILLSATVP 470
Query: 672 NYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYI 705
N ++ A ++ +K ++ + RPVPL + Y+
Sbjct: 471 NTQEFASWVGRTKKKDIYVISTAKRPVPL-EHYL 503
Score = 66 (28.3 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 35/120 (29%), Positives = 57/120 (47%)
Query: 470 LDPNEKLIKISEM-PEWAQPAFKGMTQLNRVQSR-VYKSALSSADNILLCAPTGAGKTNV 527
+D N+++ E+ P+ A+ + +L+ Q VY L + D++ + A T AGKT V
Sbjct: 299 VDVNKEISNFHELVPDMAR---EWPFELDTFQKEAVYH--LENGDSVFVAAHTSAGKTVV 353
Query: 528 AVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGD 587
A I AL + H K +Y +P+KAL + + N DV + L+GD
Sbjct: 354 AEYAI----AL------AAKHMT-KAIYTSPIKALSNQKFRDFKNTFD--DVGI--LTGD 398
Score = 47 (21.6 bits), Expect = 2.0e-13, Sum P(3) = 2.0e-13
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 108 EAMLSVIQQ-QLGGQPLNIVSGAADEILAVLKNDAVKNPDKKK 149
E + S + Q LG Q NI A DE++A N +N +K+
Sbjct: 2 ETLSSTLAQLDLGSQ--NIGGKAFDELIAAEGNGTYQNRARKR 42
Score = 41 (19.5 bits), Expect = 8.2e-13, Sum P(3) = 8.2e-13
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 89 AAASEGTYQPKTKETRA 105
AA GTYQ + ++ RA
Sbjct: 28 AAEGNGTYQNRARKRRA 44
>SGD|S000004390 [details] [associations]
symbol:SKI2 "Ski complex component and putative RNA helicase"
species:4932 "Saccharomyces cerevisiae" [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=IGI;IMP] [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0055087 "Ski
complex" evidence=IDA;IPI] [GO:0034427 "nuclear-transcribed mRNA
catabolic process, exonucleolytic, 3'-5'" evidence=IMP] [GO:0070481
"nuclear-transcribed mRNA catabolic process, non-stop decay"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 SGD:S000004390 GO:GO:0005524
GO:GO:0006417 GO:GO:0003677 EMBL:BK006945 GO:GO:0051607
GO:GO:0003723 EMBL:U19729 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:Z18944 EMBL:L13469 GO:GO:0008026 GO:GO:0003724
GO:GO:0070478 GO:GO:0070481 eggNOG:COG4581 KO:K05544
RefSeq:NP_013505.4 GeneID:851117 KEGG:sce:YLR401C
InterPro:IPR025696 Pfam:PF13234 GO:GO:0055087 HOGENOM:HOG000163048
KO:K12599 OMA:TRLDETC OrthoDB:EOG4WM82R PIR:S55954
RefSeq:NP_013502.3 PDB:4A4K PDB:4A4Z PDBsum:4A4K PDBsum:4A4Z
ProteinModelPortal:P35207 SMR:P35207 DIP:DIP-5887N IntAct:P35207
MINT:MINT-662639 STRING:P35207 PaxDb:P35207 PeptideAtlas:P35207
EnsemblFungi:YLR398C GeneID:851114 KEGG:sce:YLR398C CYGD:YLR398c
GeneTree:ENSGT00690000102154 NextBio:967830 Genevestigator:P35207
GermOnline:YLR398C Uniprot:P35207
Length = 1287
Score = 189 (71.6 bits), Expect = 3.7e-13, Sum P(3) = 3.7e-13
Identities = 52/160 (32%), Positives = 83/160 (51%)
Query: 736 VLIFVHSRKETAKTARAIRDTAL----ENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791
+++FV S+K + A + E + F+ E S++R + + D+ + +
Sbjct: 629 MVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFI-EKSITR-LKKEDRDLPQILKTRS 686
Query: 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNP 851
LL G A+HH G+ ++L+E LF G ++VL +T T A G+NLP TVI + I
Sbjct: 687 LLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIF--SSIRKH 744
Query: 852 EKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL 891
+ EL+P + QM GRAGR DS G I++ +S L
Sbjct: 745 DGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPL 784
Score = 90 (36.7 bits), Expect = 3.7e-13, Sum P(3) = 3.7e-13
Identities = 40/167 (23%), Positives = 69/167 (41%)
Query: 548 HSNY-KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPE 606
H N K +Y +P+KAL + + DV + ++GD + + +I+TT
Sbjct: 369 HRNMTKTIYTSPIKALSNQKFRDFKETFD--DVNIGLITGDVQINP---DANCLIMTTEI 423
Query: 607 KWDIITRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGL 666
++ R G + +RG V E ++ +H++ + L
Sbjct: 424 LRSMLYR--GADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIML-------PQHVKFILL 474
Query: 667 SATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713
SAT+PN + A ++ +K ++ RPVPL I I KK L
Sbjct: 475 SATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLE---INIWAKKEL 518
Score = 69 (29.3 bits), Expect = 5.0e-11, Sum P(3) = 5.0e-11
Identities = 36/130 (27%), Positives = 53/130 (40%)
Query: 462 VPAMKH--KPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSR-VYKSALSSADNILLCA 518
VP K +D N K+ E+ PA +L+ Q VY L D++ + A
Sbjct: 296 VPVKKEWAHVVDLNHKIENFDELIP--NPARSWPFELDTFQKEAVYH--LEQGDSVFVAA 351
Query: 519 PTGAGKTNVAVLTILQQLALNRNDDGSFNHSNY-KIVYVAPMKALVAEVVGNLSNRLQMY 577
T AGKT VA I + H N K +Y +P+KAL + +
Sbjct: 352 HTSAGKTVVAEYAI------------AMAHRNMTKTIYTSPIKALSNQKFRDFKETFD-- 397
Query: 578 DVKVRELSGD 587
DV + ++GD
Sbjct: 398 DVNIGLITGD 407
Score = 40 (19.1 bits), Expect = 3.7e-13, Sum P(3) = 3.7e-13
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 365 LD-QLHATRATAKERQKNLEKSIREE 389
LD ++ A A KE +K+ KSI EE
Sbjct: 233 LDIRIEANEAKLKEEEKSA-KSISEE 257
>POMBASE|SPAC17H9.02 [details] [associations]
symbol:SPAC17H9.02 "TRAMP complex ATP-dependent RNA
helicase (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISO]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0006364
"rRNA processing" evidence=ISO] [GO:0016078 "tRNA catabolic
process" evidence=ISO] [GO:0031499 "TRAMP complex" evidence=ISO]
[GO:0043630 "ncRNA polyadenylation involved in
polyadenylation-dependent ncRNA catabolic process" evidence=ISO]
[GO:0071049 "nuclear retention of pre-mRNA with aberrant 3'-ends at
the site of transcription" evidence=ISO] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC17H9.02 GO:GO:0005524
EMBL:CU329670 GO:GO:0005730 GO:GO:0003676 GO:GO:0031499
GO:GO:0043630 GO:GO:0016078 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG4581
HOGENOM:HOG000163047 KO:K12598 InterPro:IPR025696 Pfam:PF13234
OrthoDB:EOG4S1XG7 GO:GO:0071049 PIR:T37868 RefSeq:NP_593572.1
ProteinModelPortal:O13799 STRING:O13799 EnsemblFungi:SPAC17H9.02.1
GeneID:2542173 KEGG:spo:SPAC17H9.02 OMA:FARWISE NextBio:20803244
Uniprot:O13799
Length = 1030
Score = 198 (74.8 bits), Expect = 7.9e-13, Sum P(2) = 7.9e-13
Identities = 66/231 (28%), Positives = 113/231 (48%)
Query: 679 FLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQ-VL 737
F N +K L D+S R S+ ++ L+R ++N + ++ ++ ++
Sbjct: 324 FKTENFKKVLEVLDHSTRQENYSKSSKKVKKSSSLER--IIN-------MVLSNRYDPII 374
Query: 738 IFVHSRKETAKTARAIRDTALENDTLGRFLKE---DSVSREILQSHTDMVKSNDLKDLLP 794
+F S+KE A L NDT + L DS ++ + + + +++ LL
Sbjct: 375 VFCFSKKECEINAHQFGKLDL-NDTENKELVTEIFDSAINQLSEEDRGLRQFEEMRSLLL 433
Query: 795 YGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKG 854
G IHH+G+ ++LVE LF +G V++L +T T + G+N+PA TV+ Q ++
Sbjct: 434 RGIGIHHSGLLPILKELVEILFQEGLVRILFATETFSIGLNMPARTVLFTKAQKFSGNNF 493
Query: 855 AWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS-ELRYYLSLMNQQLPI 904
W L+ + MQM GRAGR D+ G I+I S + + LMN Q +
Sbjct: 494 RW--LTSGEYMQMSGRAGRRGIDTKGLSIVILDQSIDEQAARCLMNGQADV 542
Score = 66 (28.3 bits), Expect = 7.9e-13, Sum P(2) = 7.9e-13
Identities = 27/97 (27%), Positives = 47/97 (48%)
Query: 467 HKPLDPNE-KLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKT 525
HK + P++ I +++ PA +L+ QS K + +++L+ A T AGKT
Sbjct: 96 HKVVVPDDYDYIPLNKHIPSDPPAKTYPFELDPFQSTAIK-CVERMESVLVSAHTSAGKT 154
Query: 526 NVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562
+A I Q L NR +++Y +P+K+L
Sbjct: 155 VIAEYAIAQALK-NRQ----------RVIYTSPIKSL 180
Score = 39 (18.8 bits), Expect = 4.9e-10, Sum P(2) = 4.9e-10
Identities = 7/27 (25%), Positives = 17/27 (62%)
Query: 326 LRNRLKVVWCTRLARAQDQEERKKIEE 352
L+NR +V++ + + +Q+ R+ + E
Sbjct: 165 LKNRQRVIYTSPIKSLSNQKYRELLSE 191
>ZFIN|ZDB-GENE-010430-5 [details] [associations]
symbol:skiv2l "superkiller viralicidic activity 2 (S.
cerevisiae homolog)-like" species:7955 "Danio rerio" [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-010430-5 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234
GeneTree:ENSGT00690000102154 EMBL:FP102194 EMBL:FP067438
IPI:IPI00490616 Ensembl:ENSDART00000089609 OMA:TIMASAD Bgee:F1R881
Uniprot:F1R881
Length = 1249
Score = 183 (69.5 bits), Expect = 1.4e-12, Sum P(3) = 1.4e-12
Identities = 55/180 (30%), Positives = 93/180 (51%)
Query: 736 VLIFVHSRKETAKTARAIRD----TALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791
V+ F SR + AR++ T++E + FL++ S++R + + + ++D
Sbjct: 578 VVAFTFSRTRCDENARSLTSLDLTTSIEKSEIHSFLQK-SLTR-LRGGDRQLPQILLMRD 635
Query: 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNP 851
LL G +HH+G+ ++++E LF G V+VL +T T A GVN+PA TV+ I
Sbjct: 636 LLKRGIGVHHSGILPILKEVIEMLFSRGLVKVLFATETFAMGVNMPARTVVFDS--IRKH 693
Query: 852 EKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII--TG-HSELRYYLSLMNQQLPIESQF 908
+ + L P + +QM GRAGR D+ G II+ G H + ++ + + SQF
Sbjct: 694 DGTGFRNLLPGEYIQMAGRAGRRGLDATGTVIILCKAGVHDMGELHSMMLGKPTVLHSQF 753
Score = 83 (34.3 bits), Expect = 1.4e-12, Sum P(3) = 1.4e-12
Identities = 40/170 (23%), Positives = 71/170 (41%)
Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDII 611
+ +Y +P+KAL + + N DV + L+GD L E + +I+TT ++
Sbjct: 363 RTIYTSPIKALSNQKFRDFKNTFG--DVGL--LTGDVQLNP---EGSCLIMTTEILRSML 415
Query: 612 TRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671
+G L RG V E ++ EH+ ++ LSAT+P
Sbjct: 416 Y--NGSEVIRDLEWVIFDEVHYINDAERGVVWEEVLIML-------PEHVSIILLSATVP 466
Query: 672 NYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQ-YIGIQVKKPLQRFQLMN 720
N + + ++ ++ ++ RPVPL Y G K + F L++
Sbjct: 467 NAVEFSEWIGRIKKRHIYVISTIKRPVPLEHYLYTGNSTKTQKELFMLLD 516
Score = 67 (28.6 bits), Expect = 6.0e-11, Sum P(3) = 6.0e-11
Identities = 32/103 (31%), Positives = 49/103 (47%)
Query: 488 PAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFN 547
PAFK +L+ Q + L + D++ + A T AGKT VA I AL++
Sbjct: 311 PAFKYPFELDVFQKQAILR-LEAHDSVFVAAHTSAGKTVVAEYAI----ALSQK------ 359
Query: 548 HSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590
H + +Y +P+KAL + + N DV + L+GD L
Sbjct: 360 HMT-RTIYTSPIKALSNQKFRDFKNTFG--DVGL--LTGDVQL 397
Score = 47 (21.6 bits), Expect = 1.4e-12, Sum P(3) = 1.4e-12
Identities = 33/116 (28%), Positives = 49/116 (42%)
Query: 1020 LKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQ 1079
L+ ++ D + SE+F V R + EL KLL V L E +I VL +
Sbjct: 1008 LQDSLKDFHCIHSPTFSEQFTRVQERMSVQEELDKLLFLVSDQSLTLLPEYHQRIKVL-E 1066
Query: 1080 AYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLA--EKALNLSKMV 1133
A + + G V S+ LL L E++ + + LA E A LS +V
Sbjct: 1067 A-LQYVDSSGAVQLKGRVACQISSHELL--LTELLFENTLSPLAPEESAALLSCLV 1119
>RGD|1309795 [details] [associations]
symbol:Polq "polymerase (DNA directed), theta" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=ISO] InterPro:IPR001098 InterPro:IPR001650
InterPro:IPR002298 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482
SMART:SM00490 RGD:1309795 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
SUPFAM:SSF53098 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0003887 OMA:CFSDESI IPI:IPI00362354
Ensembl:ENSRNOT00000034841 UCSC:RGD:1309795 Uniprot:D4ABI8
Length = 2540
Score = 232 (86.7 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 94/312 (30%), Positives = 153/312 (49%)
Query: 654 IETTKEHIRLVG--LSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKK 711
+ T +++LV L+A L + + + L +++ G +D+S + V Q + QVK
Sbjct: 265 MSATLPNLQLVASWLNAELYHTDFRPVPLLESIKVGNSIYDSSMKLVREFQPLL--QVKG 322
Query: 712 PLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAI-RDTA-LENDTLGRFLKE 769
LCYE V H VL+F S+K K A I R+ L + G +K
Sbjct: 323 DEDHIV---SLCYE---TVRDNHSVLVFCPSKKWCEKVADIIAREFYNLHHQPEG-LVKS 375
Query: 770 DSVSREILQSHT-----DMVKSND------LKDLLPYGFAIHHAGMTRGDRQLVEDLFGD 818
IL + D +K + LK+ +P+G A HHAG+T +R ++E F
Sbjct: 376 SEFPPVILDQKSLLEVIDQLKRSPSGLDSVLKNTVPWGVAFHHAGLTFEERDIIEGAFRQ 435
Query: 819 GHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIM---QMLGRAGRPQ 875
G ++VL +T+TL+ GVNLPA VII+ T ++ + PLDI+ QM+GRAGR
Sbjct: 436 GLIRVLAATSTLSSGVNLPARRVIIR-TPVFGGQ--------PLDILTYKQMVGRAGRKG 486
Query: 876 YDSYGEGIIITGHSELRYYLSLMNQQL-PIESQFVSK---LADQLNA--EIVL-GTVQNA 928
D+ GE I++ +SE ++L+ L P+ S S+ + + A EI++ G +
Sbjct: 487 VDTMGESILVCKNSEKSKGIALLQGSLEPVHSCLQSQGEVTSTMIRAILEIIVSGVASTS 546
Query: 929 KEACNWIGYTYL 940
++ + T+L
Sbjct: 547 QDMQTYAACTFL 558
Score = 37 (18.1 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 1064 KESLEEPSAKINVLLQAYISQLKLEGLSLTS 1094
KE+L + K+ + Q ++ L+L G+ ++
Sbjct: 2018 KENLHDIFCKVEMPSQYCLALLELNGIGFST 2048
>UNIPROTKB|D4A628 [details] [associations]
symbol:Polq "Polymerase (DNA directed), theta (Predicted),
isoform CRA_a" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=IEA] InterPro:IPR001098 InterPro:IPR001650
InterPro:IPR002298 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482
SMART:SM00490 RGD:1309795 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 SUPFAM:SSF53098 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00640000091272 GO:GO:0008026
GO:GO:0003887 GO:GO:0043142 CTD:10721 KO:K02349 OrthoDB:EOG42RD6C
EMBL:CH473967 IPI:IPI00949142 RefSeq:NP_001099348.1
UniGene:Rn.131176 Ensembl:ENSRNOT00000063995 GeneID:288079
KEGG:rno:288079 NextBio:627549 Uniprot:D4A628
Length = 2547
Score = 232 (86.7 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 94/312 (30%), Positives = 153/312 (49%)
Query: 654 IETTKEHIRLVG--LSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKK 711
+ T +++LV L+A L + + + L +++ G +D+S + V Q + QVK
Sbjct: 265 MSATLPNLQLVASWLNAELYHTDFRPVPLLESIKVGNSIYDSSMKLVREFQPLL--QVKG 322
Query: 712 PLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAI-RDTA-LENDTLGRFLKE 769
LCYE V H VL+F S+K K A I R+ L + G +K
Sbjct: 323 DEDHIV---SLCYE---TVRDNHSVLVFCPSKKWCEKVADIIAREFYNLHHQPEG-LVKS 375
Query: 770 DSVSREILQSHT-----DMVKSND------LKDLLPYGFAIHHAGMTRGDRQLVEDLFGD 818
IL + D +K + LK+ +P+G A HHAG+T +R ++E F
Sbjct: 376 SEFPPVILDQKSLLEVIDQLKRSPSGLDSVLKNTVPWGVAFHHAGLTFEERDIIEGAFRQ 435
Query: 819 GHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIM---QMLGRAGRPQ 875
G ++VL +T+TL+ GVNLPA VII+ T ++ + PLDI+ QM+GRAGR
Sbjct: 436 GLIRVLAATSTLSSGVNLPARRVIIR-TPVFGGQ--------PLDILTYKQMVGRAGRKG 486
Query: 876 YDSYGEGIIITGHSELRYYLSLMNQQL-PIESQFVSK---LADQLNA--EIVL-GTVQNA 928
D+ GE I++ +SE ++L+ L P+ S S+ + + A EI++ G +
Sbjct: 487 VDTMGESILVCKNSEKSKGIALLQGSLEPVHSCLQSQGEVTSTMIRAILEIIVSGVASTS 546
Query: 929 KEACNWIGYTYL 940
++ + T+L
Sbjct: 547 QDMQTYAACTFL 558
Score = 37 (18.1 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 1064 KESLEEPSAKINVLLQAYISQLKLEGLSLTS 1094
KE+L + K+ + Q ++ L+L G+ ++
Sbjct: 2025 KENLHDIFCKVEMPSQYCLALLELNGIGFST 2055
>DICTYBASE|DDB_G0275633 [details] [associations]
symbol:DDB_G0275633 "superkiller viralicidic activity
2-like protein" species:44689 "Dictyostelium discoideum"
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0275633 GO:GO:0005524
GO:GO:0003676 EMBL:AAFI02000013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG4581 KO:K12598 OMA:ENFQKAM
InterPro:IPR025696 Pfam:PF13234 RefSeq:XP_643574.1
ProteinModelPortal:Q86IE2 STRING:Q86IE2 EnsemblProtists:DDB0233453
GeneID:8620161 KEGG:ddi:DDB_G0275633 InParanoid:Q86IE2
ProtClustDB:CLSZ2444279 Uniprot:Q86IE2
Length = 1128
Score = 169 (64.5 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 49/167 (29%), Positives = 83/167 (49%)
Query: 723 CYE--KVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKE--DSVSREILQ 778
CY+ K++ V+IF S+KE A + ND ++ ++ + +
Sbjct: 447 CYKIVKMIMERNYQPVIIFSFSKKECETYALQMSKLDFNNDDEKNAVETIFNNAIDSLSE 506
Query: 779 SHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPA 838
S + ++ LL G IHHAG+ ++++E LF G+++ L +T T + G+N+PA
Sbjct: 507 SDKQLPAVINILPLLKRGIGIHHAGLLPILKEIIEILFQYGYIKALFATETFSIGLNMPA 566
Query: 839 HTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885
TVI + ++ E W +S + +QM GRAGR D GI+I
Sbjct: 567 KTVIFTSVRKFDGEGMRW--ISGGEYIQMSGRAGRRGLDE--RGIVI 609
Score = 86 (35.3 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 37/154 (24%), Positives = 67/154 (43%)
Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDII 611
+++Y +P+KAL + +L Q DV + ++GD T+ + +++TT ++
Sbjct: 256 RVIYTSPIKALSNQKFRDLQETFQ--DVGL--MTGDITINANA---SCLVMTTEILRSML 308
Query: 612 TRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671
R G T ++ RG V E + + ++ V LSAT+P
Sbjct: 309 YR--GSETMREVSWVIFDEIHYLRDKERGVVWEETII-------LLPDSVKFVFLSATIP 359
Query: 672 NYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYI 705
N + A ++ ++ YRP+PL Q YI
Sbjct: 360 NAREFAAWIAKIHKQPCHVVYTEYRPIPL-QHYI 392
Score = 69 (29.3 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
Identities = 31/108 (28%), Positives = 53/108 (49%)
Query: 483 PEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRND 542
PE +PA +L+ Q+ + + +++L+ A T AGKT VA +I L
Sbjct: 199 PEPIKPARTYPFKLDPFQATSI-ACIERNESVLVSAHTSAGKTVVAEYSIATALR----- 252
Query: 543 DGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590
DG +++Y +P+KAL + +L Q DV + ++GD T+
Sbjct: 253 DGQ------RVIYTSPIKALSNQKFRDLQETFQ--DVGL--MTGDITI 290
>POMBASE|SPAC6F12.16c [details] [associations]
symbol:mtr4 "ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4" species:4896 "Schizosaccharomyces pombe" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISO] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005730 "nucleolus" evidence=ISO] [GO:0006364 "rRNA processing"
evidence=ISO] [GO:0016078 "tRNA catabolic process" evidence=ISO]
[GO:0031499 "TRAMP complex" evidence=IDA] [GO:0043630 "ncRNA
polyadenylation involved in polyadenylation-dependent ncRNA
catabolic process" evidence=ISO] [GO:0071049 "nuclear retention of
pre-mRNA with aberrant 3'-ends at the site of transcription"
evidence=ISO] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
PomBase:SPAC6F12.16c GO:GO:0005524 EMBL:CU329670 GO:GO:0005730
GO:GO:0003676 GO:GO:0031499 GO:GO:0043630 GO:GO:0016078
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 HOGENOM:HOG000163047 KO:K12598 InterPro:IPR025696
Pfam:PF13234 EMBL:AB027847 PIR:T11667 RefSeq:NP_593302.1
ProteinModelPortal:O14232 STRING:O14232 EnsemblFungi:SPAC6F12.16c.1
GeneID:2541639 KEGG:spo:SPAC6F12.16c OMA:DDRISAD OrthoDB:EOG4S1XG7
NextBio:20802732 GO:GO:0071049 Uniprot:O14232
Length = 1117
Score = 166 (63.5 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 47/164 (28%), Positives = 89/164 (54%)
Query: 726 KVVAVAGKHQVLIFVHSRKETAKTARAIRDTALE-NDTLGRFLKE---DSVSREILQSHT 781
K++ V + V++F S++E A A++ + L+ ND R L ++ ++ +
Sbjct: 447 KMIMVKNYNPVIVFSFSKRECE--ALALQMSKLDMNDQTERDLVTTIFNNAVNQLSEKDR 504
Query: 782 DMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTV 841
++ + + LL G IHH+G+ ++++E LF +G ++VL +T T + G+N+PA TV
Sbjct: 505 ELPQIEHILPLLRRGIGIHHSGLLPILKEVIEILFQEGLLKVLFATETFSIGLNMPAKTV 564
Query: 842 IIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885
+ + ++ + W +S + +QM GRAGR D GI+I
Sbjct: 565 VFTNVRKFDGKTFRW--ISGGEYIQMSGRAGRRGLDD--RGIVI 604
Score = 71 (30.1 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 33/134 (24%), Positives = 57/134 (42%)
Query: 430 AFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHK-PLDPNEKLIKISEMPEWAQP 488
+F+Q K + E T + E H ++H+ + PN + IS+ P
Sbjct: 135 SFEQEASLQVAGKVGMTEAKSS-TEEVVELRH--QVRHQVSIPPNYDYVPISKHKSPIPP 191
Query: 489 AFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNH 548
A L+ Q+ V + + +++L+ A T AGKT VA + Q L
Sbjct: 192 ARTYPFTLDPFQA-VSIACIERQESVLVSAHTSAGKTVVAEYAVAQSL-----------R 239
Query: 549 SNYKIVYVAPMKAL 562
+++Y +P+KAL
Sbjct: 240 DKQRVIYTSPIKAL 253
Score = 66 (28.3 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 38/156 (24%), Positives = 69/156 (44%)
Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDII 611
+++Y +P+KAL + L + DV + ++GD T+ + T +++TT ++
Sbjct: 243 RVIYTSPIKALSNQKYRELL--AEFGDVGL--MTGDVTINP---DATCLVMTTEILRSML 295
Query: 612 TRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671
R G ++ RG V E + + K H V LSAT+P
Sbjct: 296 YR--GSEVMREVAWVIFDEIHYMRDKERGVVWEETII-----LLPDKSHF--VFLSATIP 346
Query: 672 NYEDVALFL-RVNLEK-GLFYFDNSYRPVPLSQQYI 705
N A ++ +++ + + Y D +RP PL Q Y+
Sbjct: 347 NAMQFAEWITKIHRQPCHVVYTD--FRPTPL-QHYL 379
>FB|FBgn0039117 [details] [associations]
symbol:tst "twister" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
eggNOG:COG4581 InterPro:IPR025696 Pfam:PF13234 EMBL:AJ276896
ProteinModelPortal:Q9BI21 SMR:Q9BI21 STRING:Q9BI21 PaxDb:Q9BI21
PRIDE:Q9BI21 FlyBase:FBgn0039117 InParanoid:Q9BI21
OrthoDB:EOG46HDRK ArrayExpress:Q9BI21 Bgee:Q9BI21 Uniprot:Q9BI21
Length = 1197
Score = 175 (66.7 bits), Expect = 2.7e-11, Sum P(4) = 2.7e-11
Identities = 47/128 (36%), Positives = 71/128 (55%)
Query: 789 LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQI 848
LKD L G +HH+G+ +++VE LF +G V++L +T T A GVN+PA TV+ +
Sbjct: 574 LKDALERGIGVHHSGILPILKEIVEMLFQNGLVKLLFATETFAMGVNMPARTVVFDSCKK 633
Query: 849 YNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT-GHSELRYYLSLMNQQLP--IE 905
++ + L P + +QM GRAGR +D G II+ G L M LP ++
Sbjct: 634 FDGLE--MRNLKPGEYIQMAGRAGRRGHDETGTAIIMCKGSVPPSMELRPMILGLPEKLQ 691
Query: 906 SQFVSKLA 913
SQF+ + A
Sbjct: 692 SQFILRYA 699
Score = 72 (30.4 bits), Expect = 2.7e-11, Sum P(4) = 2.7e-11
Identities = 16/49 (32%), Positives = 29/49 (59%)
Query: 659 EHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQ-QYIG 706
EH+ ++ LSAT+PN ++A ++ ++ ++ RPVPL+ Y G
Sbjct: 398 EHVNIIMLSATVPNTLELADWVGSTKKRKVYVISTLKRPVPLTHFLYTG 446
Score = 51 (23.0 bits), Expect = 2.7e-11, Sum P(4) = 2.7e-11
Identities = 14/78 (17%), Positives = 35/78 (44%)
Query: 1146 QFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHV 1205
++ + EI++ + + A Y D +++GE + + +F + + +L H+
Sbjct: 932 KYVNLSKEIIVNADS-EVAMLNYVDHLLRKVGEFLPHTNIAGFEQEFAKVYERRMLEIHI 990
Query: 1206 QPITRTVLKVELTITPDF 1223
+ + LT+ PD+
Sbjct: 991 EELRFKNSARNLTLYPDY 1008
Score = 47 (21.6 bits), Expect = 2.7e-11, Sum P(4) = 2.7e-11
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 508 LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562
L + + A T AGKT VA I AL++ D + +Y +P+KAL
Sbjct: 274 LEQRQYVFVAAHTSAGKTVVAEYAI----ALSKRD-------LTRTIYTSPIKAL 317
Score = 38 (18.4 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 3 KNLGGGAEAHARFKQYEY 20
K GGG H KQ +Y
Sbjct: 485 KGGGGGPRNHLNAKQEQY 502
>TAIR|locus:2026001 [details] [associations]
symbol:MTR4 "homolog of yeast MTR4" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0031125 "rRNA 3'-end processing" evidence=IMP] [GO:0000398
"mRNA splicing, via spliceosome" evidence=RCA] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=RCA] [GO:0000741 "karyogamy" evidence=RCA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0006406 "mRNA export from nucleus" evidence=RCA] [GO:0006606
"protein import into nucleus" evidence=RCA] [GO:0009560 "embryo sac
egg cell differentiation" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0009909 "regulation of
flower development" evidence=RCA] [GO:0010074 "maintenance of
meristem identity" evidence=RCA] [GO:0010212 "response to ionizing
radiation" evidence=RCA] [GO:0010388 "cullin deneddylation"
evidence=RCA] [GO:0016567 "protein ubiquitination" evidence=RCA]
[GO:0016571 "histone methylation" evidence=RCA] [GO:0016579
"protein deubiquitination" evidence=RCA] [GO:0030422 "production of
siRNA involved in RNA interference" evidence=RCA] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=RCA] [GO:0043687 "post-translational protein modification"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0048825 "cotyledon development"
evidence=RCA] [GO:0051301 "cell division" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005634 GO:GO:0003676
EMBL:AC007258 UniGene:At.74832 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0031125 eggNOG:COG4581
HOGENOM:HOG000163047 KO:K12598 OMA:ENFQKAM InterPro:IPR025696
Pfam:PF13234 EMBL:AK176836 IPI:IPI00536033 PIR:E96621
RefSeq:NP_176185.1 UniGene:At.43462 ProteinModelPortal:Q9XIF2
SMR:Q9XIF2 PaxDb:Q9XIF2 PRIDE:Q9XIF2 EnsemblPlants:AT1G59760.1
GeneID:842269 KEGG:ath:AT1G59760 TAIR:At1g59760 InParanoid:Q9XIF2
PhylomeDB:Q9XIF2 ProtClustDB:CLSN2679700 ArrayExpress:Q9XIF2
Genevestigator:Q9XIF2 Uniprot:Q9XIF2
Length = 988
Score = 172 (65.6 bits), Expect = 7.7e-11, Sum P(2) = 7.7e-11
Identities = 49/158 (31%), Positives = 84/158 (53%)
Query: 736 VLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLK----- 790
V++F S+KE A + L +D ++D+V I S DM+ +D K
Sbjct: 323 VILFSFSKKECEALAMQMSKMVLNSDD-----EKDAVET-IFASAIDMLSDDDKKLPQVS 376
Query: 791 DLLPY---GFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQ 847
++LP G +HH+G+ ++++E LF +G ++ L +T T + G+N+PA TV+ +
Sbjct: 377 NILPILKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVR 436
Query: 848 IYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885
++ +K W LS + +QM GRAGR D G I++
Sbjct: 437 KFDGDKFRW--LSSGEYIQMSGRAGRRGIDKRGICILM 472
Score = 73 (30.8 bits), Expect = 7.7e-11, Sum P(2) = 7.7e-11
Identities = 40/158 (25%), Positives = 67/158 (42%)
Query: 550 NYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWD 609
N +++Y +P+KAL + + DV + ++GD T+ +V T E
Sbjct: 110 NQRVIYTSPIKALSNQKYRDFKEEFS--DVGL--MTGDVTID----PNASCLVMTTEILR 161
Query: 610 IITRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669
+ K G ++ RG V E I ++ R V LSAT
Sbjct: 162 SMQYK-GSEIMREVAWIIFDEVHYMRDSERGVVWEE-------SIVMAPKNSRFVFLSAT 213
Query: 670 LPNYEDVALFL-RVNLEK-GLFYFDNSYRPVPLSQQYI 705
+PN ++ A ++ +V+ + + Y D YRP PL Q Y+
Sbjct: 214 VPNAKEFADWVAKVHQQPCHIVYTD--YRPTPL-QHYV 248
Score = 69 (29.3 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 26/95 (27%), Positives = 44/95 (46%)
Query: 496 LNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVY 555
L+ QS K L + +++++ A T AGKT VA I L N +++Y
Sbjct: 68 LDSFQSEAIK-CLDNGESVMVSAHTSAGKTVVASYAIAMSLK-----------ENQRVIY 115
Query: 556 VAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590
+P+KAL + + DV + ++GD T+
Sbjct: 116 TSPIKALSNQKYRDFKEEFS--DVGL--MTGDVTI 146
>WB|WBGene00016194 [details] [associations]
symbol:C28H8.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0004427 "inorganic diphosphatase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006796 "phosphate-containing compound metabolic process"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K01529 GO:GO:0008026 EMBL:FO080703
eggNOG:COG4581 GeneTree:ENSGT00690000102154 PIR:A88470
RefSeq:NP_498283.1 ProteinModelPortal:Q09475 SMR:Q09475
STRING:Q09475 PaxDb:Q09475 EnsemblMetazoa:C28H8.3.1
EnsemblMetazoa:C28H8.3.2 GeneID:175834 KEGG:cel:CELE_C28H8.3
UCSC:C28H8.3.1 CTD:175834 WormBase:C28H8.3 HOGENOM:HOG000018763
InParanoid:Q09475 OMA:YARFRNK NextBio:889866 Uniprot:Q09475
Length = 1714
Score = 149 (57.5 bits), Expect = 8.9e-11, Sum P(3) = 8.9e-11
Identities = 50/139 (35%), Positives = 71/139 (51%)
Query: 789 LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQI 848
L L G HHAG+ +R VE LF G++ VL ST+TL+ GVN+P TV+ G
Sbjct: 1274 LLKLFERGIGYHHAGLNTVERGAVEVLFRSGNLAVLFSTSTLSLGVNMPCKTVMF-GVDT 1332
Query: 849 YNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT-GHSELRYYL--SLMNQQ--LP 903
+L+PL QM GRAGR +D G I ++ S++R L SL N Q P
Sbjct: 1333 L--------QLTPLLYRQMSGRAGRRGFDHSGNVIFMSIPTSKVRRLLTASLSNLQGNPP 1384
Query: 904 IESQFVSKLADQLNAEIVL 922
F+ +L ++ + +L
Sbjct: 1385 FTVLFLLRLFAYVHQQDIL 1403
Score = 113 (44.8 bits), Expect = 8.9e-11, Sum P(3) = 8.9e-11
Identities = 47/167 (28%), Positives = 81/167 (48%)
Query: 444 DLPEGSQRFTNKGYEEIHVPA-MKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSR 502
+ P GS+ + +++++ M + L +LI I P+ G + Q +
Sbjct: 734 EAPAGSKPSSEAKQKKLNLGINMVYYQLQYGGELIDIQSDPK-KDDRVSGFAP-DGWQRK 791
Query: 503 VYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562
+ S + ++ L+ APT AGKT V+ I + L + ND +VYVAP KAL
Sbjct: 792 MLDS-VDRGNSALIIAPTSAGKTFVSYYCIEKVLRSSDND---------VVVYVAPSKAL 841
Query: 563 VAEVVGNLSNRLQMYDVKVRELSGDQTLTR---QQIEETQIIVTTPE 606
+ +V G++ R + +K R +S TLT+ Q + Q+++T PE
Sbjct: 842 INQVCGSVYARFRNKSMK-RGISLFGTLTQEYSQNAMQCQVLITVPE 887
Score = 39 (18.8 bits), Expect = 8.9e-11, Sum P(3) = 8.9e-11
Identities = 17/81 (20%), Positives = 36/81 (44%)
Query: 1010 HGTISTYNEHLKPTMGDIE-LCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLE 1068
H I +Y+ + +G +E L LF+ + R D + L +P +K +E
Sbjct: 1498 HQLIKSYDTAEQAQLGILEVLANLFTNLRMTPFHE-RSDNLENVQVTLRGLPSLLKPYVE 1556
Query: 1069 EPSAKINVLLQAYISQLKLEG 1089
E ++ + L + +++ +G
Sbjct: 1557 EYNSTVTGLYKRFMAASSQDG 1577
>UNIPROTKB|G3MYJ7 [details] [associations]
symbol:SKIV2L2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00690000102230 EMBL:DAAA02050346 EMBL:DAAA02050343
EMBL:DAAA02050344 EMBL:DAAA02050345 Ensembl:ENSBTAT00000064767
Uniprot:G3MYJ7
Length = 605
Score = 165 (63.1 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 50/168 (29%), Positives = 85/168 (50%)
Query: 726 KVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVK 785
K++ V+IF S+K+ A A++ T L+ +T +E + E+ + D +
Sbjct: 377 KMIMERNFQPVIIFSFSKKDCE--AYALQMTKLDFNTD----EEKKMVEEVFSNAIDCLS 430
Query: 786 SNDLK-----DLLPY---GFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLP 837
D K ++LP G IHH G+ ++ +E LF +G ++ L +T T A G+N+P
Sbjct: 431 DEDKKLPQVENVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMP 490
Query: 838 AHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885
A TV+ + ++ + W +S + +QM GRAGR D GI+I
Sbjct: 491 ARTVLFTNARKFDGKDFRW--ISSGEYIQMSGRAGRRGMDD--RGIVI 534
Score = 69 (29.3 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 38/157 (24%), Positives = 67/157 (42%)
Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDII 611
++++ +P+KAL + + Q DV + ++GD T+ + +++TT ++
Sbjct: 182 RVIFTSPIKALSNQKYREMYEEFQ--DVGL--MTGDVTINPTA---SCLVMTTEILRSML 234
Query: 612 TRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671
R G ++ RG V E + +++ V LSAT+P
Sbjct: 235 YR--GSEVMREVAWVIFDEIHYMRDSERGVVWEETII-------LLPDNVHYVFLSATIP 285
Query: 672 NYEDVALFLRVNLEKG---LFYFDNSYRPVPLSQQYI 705
N A ++ +L K + Y D YRP PL Q YI
Sbjct: 286 NARQFAEWI-CHLHKQPCHVIYTD--YRPTPL-QHYI 318
Score = 54 (24.1 bits), Expect = 4.3e-09, Sum P(3) = 4.3e-09
Identities = 25/89 (28%), Positives = 41/89 (46%)
Query: 505 KSALSSADN---ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561
+ A+ DN +L+ A T AGKT A I LAL ++++ +P+KA
Sbjct: 143 REAIQCVDNNQSVLVSAHTSAGKTVCAEYAIA--LALREKQ---------RVIFTSPIKA 191
Query: 562 LVAEVVGNLSNRLQMYDVKVRELSGDQTL 590
L + + Q DV + ++GD T+
Sbjct: 192 LSNQKYREMYEEFQ--DVGL--MTGDVTI 216
Score = 48 (22.0 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 131 DEILAVLKNDAVKNPDKKKEIEK 153
DE+ +V ++D+ P KK+ EK
Sbjct: 7 DELFSVFEDDSTTAPGAKKDKEK 29
>POMBASE|SPCC550.03c [details] [associations]
symbol:SPCC550.03c "Ski complex RNA helicase Ski2
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0003724 "RNA helicase activity"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006402 "mRNA catabolic
process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0055087 "Ski complex" evidence=ISO]
[GO:0071276 "cellular response to cadmium ion" evidence=IMP]
[GO:0071585 "detoxification of cadmium ion" evidence=IMP]
[GO:2000765 "regulation of cytoplasmic translation" evidence=ISO]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC550.03c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:2000765
EMBL:CU329672 GO:GO:0071276 GO:GO:0071585 GO:GO:0003723
GO:GO:0006402 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0003724 eggNOG:COG4581 GO:GO:0055087 PIR:T41378
RefSeq:NP_588095.1 ProteinModelPortal:O59801 STRING:O59801
EnsemblFungi:SPCC550.03c.1 GeneID:2538841 KEGG:spo:SPCC550.03c
HOGENOM:HOG000163048 KO:K12599 OMA:TRLDETC OrthoDB:EOG4WM82R
NextBio:20800023 Uniprot:O59801
Length = 1213
Score = 189 (71.6 bits), Expect = 1.6e-10, Sum P(3) = 1.6e-10
Identities = 57/194 (29%), Positives = 101/194 (52%)
Query: 736 VLIFVHSRKETAKTARAIRDTALEND---TLGRFLKEDSVSREILQSHTDMVKSNDLKDL 792
V++FV S+K + + + L N + + E +V+R + + + + ++++
Sbjct: 553 VIVFVFSKKRCEEYVDTLTNRDLNNHQEKSEVHVVIEKAVAR-LKKEDRLLPQIGRMREM 611
Query: 793 LPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPE 852
L G A+HH G+ +++VE LF G V+VL +T T A GVN+PA +V+ GTQ ++
Sbjct: 612 LSRGLAVHHGGLLPIIKEIVEILFQRGLVKVLFATETFAMGVNMPAKSVVFSGTQKHDGR 671
Query: 853 KGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKL 912
+ +L P + Q GRAGR D G +II SEL SL + + S+ +S+
Sbjct: 672 N--FRDLLPGEYTQCSGRAGRRGLDVTGT-VIILSRSELPDTASLRHMIMGPSSKLISQF 728
Query: 913 ADQLNAEIVLGTVQ 926
+L ++L ++
Sbjct: 729 --RLTYNMILNLLR 740
Score = 59 (25.8 bits), Expect = 1.6e-10, Sum P(3) = 1.6e-10
Identities = 25/80 (31%), Positives = 39/80 (48%)
Query: 508 LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567
L D++ + A T AGKT VA I AL + H K +Y +P+KAL +
Sbjct: 292 LEMGDSVFVAAHTSAGKTVVAEYAI----ALAQK------HMT-KAIYTSPIKALSNQKF 340
Query: 568 GNLSNRLQMYDVKVRELSGD 587
+ ++ + DV + L+GD
Sbjct: 341 RDFKHKFE--DVGI--LTGD 356
Score = 45 (20.9 bits), Expect = 4.2e-09, Sum P(3) = 4.2e-09
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 605 PEKWDIITRKSGDRTYTQL 623
PEKWD KS +R + +
Sbjct: 192 PEKWDTKKVKSSNRNFVTI 210
Score = 44 (20.5 bits), Expect = 1.6e-10, Sum P(3) = 1.6e-10
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 338 LARAQDQEERKKIEEEMMGLG--PDLAAILDQLHATRATAKERQKN 381
LAR Q + +R +E ++MG P+L L+ +++ K KN
Sbjct: 81 LARTQIRFQRHGLEGKIMGYKEVPELIEDLNSKNSSSFLRKPSSKN 126
Score = 40 (19.1 bits), Expect = 5.2e-09, Sum P(2) = 5.2e-09
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 139 NDAVKNPDK 147
NDA+K PDK
Sbjct: 486 NDALKKPDK 494
>UNIPROTKB|Q8IY21 [details] [associations]
symbol:DDX60 "Probable ATP-dependent RNA helicase DDX60"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0045087 "innate immune response" evidence=IEA] [GO:0051607
"defense response to virus" evidence=IEA] [GO:0009615 "response to
virus" evidence=IDA] [GO:0003725 "double-stranded RNA binding"
evidence=IDA] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:1900245 "positive regulation of MDA-5 signaling
pathway" evidence=IMP] [GO:1900246 "positive regulation of RIG-I
signaling pathway" evidence=IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003727 GO:GO:0045087 GO:GO:0051607 GO:GO:0009615
GO:GO:0003690 GO:GO:0003725 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AC068989 EMBL:BC007820
EMBL:BC038115 EMBL:AK001649 IPI:IPI00217606 RefSeq:NP_060101.3
UniGene:Hs.591710 ProteinModelPortal:Q8IY21 SMR:Q8IY21
IntAct:Q8IY21 STRING:Q8IY21 PhosphoSite:Q8IY21 DMDM:296439377
PaxDb:Q8IY21 PRIDE:Q8IY21 Ensembl:ENST00000393743 GeneID:55601
KEGG:hsa:55601 UCSC:uc003irp.3 CTD:55601 GeneCards:GC04M169137
HGNC:HGNC:25942 HPA:HPA046952 MIM:613974 neXtProt:NX_Q8IY21
PharmGKB:PA162383444 eggNOG:COG4581 HOGENOM:HOG000169263
HOVERGEN:HBG107797 InParanoid:Q8IY21 OMA:QDCTYAD OrthoDB:EOG4XSKP0
PhylomeDB:Q8IY21 GenomeRNAi:55601 NextBio:60142 ArrayExpress:Q8IY21
Bgee:Q8IY21 CleanEx:HS_DDX60 Genevestigator:Q8IY21 GO:GO:1900245
GO:GO:1900246 Uniprot:Q8IY21
Length = 1712
Score = 158 (60.7 bits), Expect = 1.7e-10, Sum P(3) = 1.7e-10
Identities = 52/178 (29%), Positives = 84/178 (47%)
Query: 708 QVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFL 767
+VKK +++ +++++ +K V Q LI K ++ + D +
Sbjct: 1175 KVKKSIEKQKIIDEKSQKKTRNV---DQSLIHEAEHDNLVKCLE--KNLEIPQDCT--YA 1227
Query: 768 KEDSVSREILQSHTDMVK----SNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQV 823
+ +V E LQ VK +LK L G HH+ M+ ++QLVE LF G+++V
Sbjct: 1228 DQKAVDTETLQKVFGRVKFERKGEELKALAERGIGYHHSAMSFKEKQLVEILFRKGYLRV 1287
Query: 824 LVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGE 881
+ +T TLA GVN+P +V+ +Y L L+ QM GRAGR D G+
Sbjct: 1288 VTATGTLALGVNMPCKSVVFAQNSVY---------LDALNYRQMSGRAGRRGQDLMGD 1336
Score = 95 (38.5 bits), Expect = 1.7e-10, Sum P(3) = 1.7e-10
Identities = 30/101 (29%), Positives = 48/101 (47%)
Query: 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571
++ ++ APT +GKT + + + L +DDG +VYVAP KALV +V +
Sbjct: 779 ESAVIVAPTSSGKTYASYYCM--EKVLKESDDGV-------VVYVAPTKALVNQVAATVQ 829
Query: 572 NRLQMYDVKVRELSGDQTLT-RQQIEETQIIVTTPEKWDII 611
NR L G T R Q+++T P ++I+
Sbjct: 830 NRFTKNLPSGEVLCGVFTREYRHDALNCQVLITVPACFEIL 870
Score = 45 (20.9 bits), Expect = 1.7e-10, Sum P(3) = 1.7e-10
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 285 QQCQKLAEEVLKILAEGDDREVENKLLYHLQFDKFS 320
++ L E+ ++L E DDR++ + L +L FD+ +
Sbjct: 674 KRIHSLMEKYSELLQE-DDRQLIARCLKYLGFDELA 708
>TIGR_CMR|SPO_3098 [details] [associations]
symbol:SPO_3098 "ATP-dependent helicase, DEAD/DEAH box
family" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR013701
InterPro:IPR017170 Pfam:PF00270 Pfam:PF00271 Pfam:PF08494
PIRSF:PIRSF037307 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
KO:K03724 RefSeq:YP_168301.1 ProteinModelPortal:Q5LNV5
GeneID:3195597 KEGG:sil:SPO3098 PATRIC:23379641
HOGENOM:HOG000036041 OMA:SYEDAPR ProtClustDB:CLSK2308438
InterPro:IPR026362 TIGRFAMs:TIGR04121 Uniprot:Q5LNV5
Length = 802
Score = 171 (65.3 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 55/172 (31%), Positives = 84/172 (48%)
Query: 515 LLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574
LL APTG GKT L L +LA +G H +YV+P+KAL A++ NL +
Sbjct: 36 LLIAPTGGGKTMAGFLPTLAELA-----EGQ--HQGLHTLYVSPLKALAADIKRNLRTPV 88
Query: 575 QMYDVKVR--ELSGDQTLT---RQQIEETQIIVTTPEKWDIITR-KSGDRTYTQLVKXXX 628
+ VR + +GD + T RQ+ + I++TTPE ++T + R + L +
Sbjct: 89 DEIGLAVRIEDRTGDTSATQKKRQRADPPHILLTTPESLALLTSYEDAPRMFAGLRRVVV 148
Query: 629 XXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFL 680
RG L +AR ++T +R VGLSAT+ + + +A FL
Sbjct: 149 DEIHALAESKRGDQLMLALAR----LQTLCPDLRRVGLSATVEDPQAIARFL 196
Score = 68 (29.0 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 26/93 (27%), Positives = 46/93 (49%)
Query: 793 LPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPE 852
LP G IHH + R R+ VE G ++ +V T +L G++ ++I QI
Sbjct: 274 LPIG--IHHGSLDRAQRERVEAAMVRGELRAIVCTGSLDLGIDWGDVDLVI---QI---- 324
Query: 853 KGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885
GA + L +Q +GRA +Y++ + +++
Sbjct: 325 -GAPKNVKRL--VQRIGRANH-RYNAPSKALLV 353
>FB|FBgn0002899 [details] [associations]
symbol:mus301 "mutagen-sensitive 301" species:7227
"Drosophila melanogaster" [GO:0007294 "germarium-derived oocyte
fate determination" evidence=IGI;IMP] [GO:0008298 "intracellular
mRNA localization" evidence=IMP;TAS] [GO:0048477 "oogenesis"
evidence=IGI;TAS] [GO:0009949 "polarity specification of
anterior/posterior axis" evidence=IMP] [GO:0030717 "karyosome
formation" evidence=IMP] [GO:0009951 "polarity specification of
dorsal/ventral axis" evidence=IMP] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS] [GO:0005682 "U5 snRNP"
evidence=ISS] [GO:0004386 "helicase activity" evidence=ISS]
[GO:0009994 "oocyte differentiation" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0016321 "female meiosis chromosome segregation"
evidence=IMP] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009949 GO:GO:0007294 EMBL:AE014296 GO:GO:0006417
GO:GO:0006200 GO:GO:0003676 GO:GO:0004386 GO:GO:0008298
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG1204
GeneTree:ENSGT00640000091272 GO:GO:0030717 GO:GO:0016321
GO:GO:0008026 OMA:SRPLENC GO:GO:0009951 EMBL:BT011090
RefSeq:NP_648178.1 UniGene:Dm.15493 SMR:Q9VSE2 IntAct:Q9VSE2
STRING:Q9VSE2 EnsemblMetazoa:FBtr0076689 GeneID:38905
KEGG:dme:Dmel_CG7972 UCSC:CG7972-RA CTD:38905 FlyBase:FBgn0002899
InParanoid:Q9VSE2 OrthoDB:EOG4MKKXB GenomeRNAi:38905 NextBio:810944
Uniprot:Q9VSE2
Length = 1051
Score = 196 (74.1 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 100/418 (23%), Positives = 172/418 (41%)
Query: 491 KGMTQLNRVQSRVYK-SALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHS 549
KG+ L Q A+ N++ PT GKT VA + +L++L +
Sbjct: 259 KGINSLYEWQDECLNLPAIRQRKNLIYALPTSGGKTLVAEILMLRELLCRERN------- 311
Query: 550 NYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQ--IIVTTPEK 607
++++ P ++V E V +S D V E + + Q + + + + EK
Sbjct: 312 ---VLFILPYVSIVQEKVSAMSPFAIDLDFIVEEYTAGKGKCPPQPRRKRRSLFIASIEK 368
Query: 608 WDIITRKSGD-RTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGL 666
++ D + ++ RG LE+ + + + +I++VG+
Sbjct: 369 GAVLMDSLIDVQRPHEIGLVVVDELHLIGEKGRGATLEAFLTKVM----FLNANIQIVGM 424
Query: 667 SATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQ-VKKPLQRFQLMN---DL 722
SAT+ N +++ FL ++ F + + I + L+ + + +
Sbjct: 425 SATIGNLSEISSFLNADVYTRGFRPVELKEYIKCGPDLLEINSAGQTLEEIFVPSRSVEY 484
Query: 723 CYEKVVA------VAG-------KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKE 769
Y + V +AG +H L+F SRK A + ++ F
Sbjct: 485 NYSEAVKRADPDHLAGLISECAPEHCCLVFCPSRKNCENVALLLSRIVPKHKF---FEHR 541
Query: 770 DSVSREILQSHTDM--VKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVST 827
S +++ + M + S L LPYG A HH+G+T +R+ +E + G V V+ T
Sbjct: 542 RSEKLDLMDALDKMCGILSPVLAKTLPYGIAYHHSGLTTDERKYIETAYRFGVVTVICCT 601
Query: 828 ATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885
+TLA GVNLPA VII+ P G L+ QM+GRAGR GE I+I
Sbjct: 602 STLAAGVNLPAKRVIIRA-----PYVGQ-EFLTLCKYKQMVGRAGRAGLGEAGESILI 653
Score = 141 (54.7 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 79/325 (24%), Positives = 134/325 (41%)
Query: 731 AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLK 790
A +H L+F SRK A + ++ E + L ++ S L
Sbjct: 506 APEHCCLVFCPSRKNCENVALLLSRIVPKHKFFEHRRSEKLDLMDALDKMCGIL-SPVLA 564
Query: 791 DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYN 850
LPYG A HH+G+T +R+ +E + G V V+ T+TLA GVNLPA VII+ +
Sbjct: 565 KTLPYGIAYHHSGLTTDERKYIETAYRFGVVTVICCTSTLAAGVNLPAKRVIIRAPYVGQ 624
Query: 851 P--EKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH---SELRYYLSLM--NQQLP 903
+ ++ LG AG + + ++ G S + LS + N+ +
Sbjct: 625 EFLTLCKYKQMVGRAGRAGLGEAGESILIAQSKDNLLVGQMLFSPMDKALSSLDQNEAVG 684
Query: 904 IESQFVS----KLAD---QLNAEIVLGTVQNAKEACNWIGYTYLYIRMLR----NPALYG 952
++S +S LA+ LN +V T+ + + + + +R+LR N L
Sbjct: 685 LQSLILSVVGLNLAECRRDLN-RLVNSTLLSVQAKSLEVAVNEIVLRILREMFKNKVLQL 743
Query: 953 LAPEVLKEDITLGE--RRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISH 1010
P+ K I + D+ DR L+ +S F++T++GR A I +
Sbjct: 744 AEPQA-KSKINSSDIITSQDVSQANRPAGDRRLLIG---QSTPFKLTNIGRAAFKAGIDY 799
Query: 1011 GTISTYNEHLKPTMGDIELCRLFSL 1035
+ ++ LK + L L
Sbjct: 800 KRANAIHKELKQAQQQLILTNYLHL 824
Score = 44 (20.5 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 14/54 (25%), Positives = 28/54 (51%)
Query: 1110 LFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF 1163
L ++L LAE +L+++V + SVQ + NEI++++ ++ F
Sbjct: 685 LQSLILSVVGLNLAECRRDLNRLVNSTLLSVQA--KSLEVAVNEIVLRILREMF 736
>UNIPROTKB|J9P0M0 [details] [associations]
symbol:DDX60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00690000102154 EMBL:AAEX03010133 EMBL:AAEX03010134
EMBL:AAEX03010135 Ensembl:ENSCAFT00000044956 Uniprot:J9P0M0
Length = 1708
Score = 159 (61.0 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 42/120 (35%), Positives = 61/120 (50%)
Query: 766 FLKEDSVSREILQSHTDMVKSN----DLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHV 821
+ + ++ E LQ D VK +LK L G HH+ ++ D+QLVE LF G +
Sbjct: 1222 YANQKAIDAETLQMVFDRVKFTRKGAELKALARRGIGYHHSSLSFKDKQLVEVLFRKGFI 1281
Query: 822 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGE 881
+V+ +T TLA G+N+P +V+ IY L L+ QM GRAGR D G+
Sbjct: 1282 RVVTATGTLALGINMPCKSVVFAQNSIY---------LDALNYRQMSGRAGRRGQDLMGD 1332
Score = 86 (35.3 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 28/101 (27%), Positives = 48/101 (47%)
Query: 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571
++ ++ APT +GKT + + + L +++G +VYVAP KALV +V +
Sbjct: 775 ESAVIVAPTSSGKTYASYYCM--EKVLKESNEGV-------VVYVAPTKALVNQVAATVH 825
Query: 572 NRLQMYDVKVRELSGDQTLT-RQQIEETQIIVTTPEKWDII 611
NR L G T R Q+++T P ++I+
Sbjct: 826 NRFTKSLPNGEALCGVFTRDYRHDALNCQVLITVPACFEIL 866
>UNIPROTKB|E2QSY2 [details] [associations]
symbol:DDX60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:1900246 "positive regulation of RIG-I
signaling pathway" evidence=IEA] [GO:1900245 "positive regulation
of MDA-5 signaling pathway" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003727
GO:GO:0051607 GO:GO:0003690 GO:GO:0003725 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 OMA:QDCTYAD
GO:GO:1900245 GO:GO:1900246 GeneTree:ENSGT00690000102154
EMBL:AAEX03010133 EMBL:AAEX03010134 EMBL:AAEX03010135
Ensembl:ENSCAFT00000014321 Uniprot:E2QSY2
Length = 1711
Score = 159 (61.0 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 42/120 (35%), Positives = 61/120 (50%)
Query: 766 FLKEDSVSREILQSHTDMVKSN----DLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHV 821
+ + ++ E LQ D VK +LK L G HH+ ++ D+QLVE LF G +
Sbjct: 1225 YANQKAIDAETLQMVFDRVKFTRKGAELKALARRGIGYHHSSLSFKDKQLVEVLFRKGFI 1284
Query: 822 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGE 881
+V+ +T TLA G+N+P +V+ IY L L+ QM GRAGR D G+
Sbjct: 1285 RVVTATGTLALGINMPCKSVVFAQNSIY---------LDALNYRQMSGRAGRRGQDLMGD 1335
Score = 86 (35.3 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 28/101 (27%), Positives = 48/101 (47%)
Query: 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571
++ ++ APT +GKT + + + L +++G +VYVAP KALV +V +
Sbjct: 778 ESAVIVAPTSSGKTYASYYCM--EKVLKESNEGV-------VVYVAPTKALVNQVAATVH 828
Query: 572 NRLQMYDVKVRELSGDQTLT-RQQIEETQIIVTTPEKWDII 611
NR L G T R Q+++T P ++I+
Sbjct: 829 NRFTKSLPNGEALCGVFTRDYRHDALNCQVLITVPACFEIL 869
>WB|WBGene00008502 [details] [associations]
symbol:skih-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG4581 EMBL:Z68341
HOGENOM:HOG000163048 KO:K12599 OMA:TRLDETC
GeneTree:ENSGT00690000102154 PIR:T20487 RefSeq:NP_502084.2
ProteinModelPortal:Q19103 SMR:Q19103 STRING:Q19103 PaxDb:Q19103
EnsemblMetazoa:F01G4.3 GeneID:178017 KEGG:cel:CELE_F01G4.3
UCSC:F01G4.3 CTD:178017 WormBase:F01G4.3 InParanoid:Q19103
NextBio:899374 Uniprot:Q19103
Length = 1266
Score = 181 (68.8 bits), Expect = 3.3e-10, Sum P(3) = 3.3e-10
Identities = 58/181 (32%), Positives = 93/181 (51%)
Query: 736 VLIFVHSRKETAKTARAIRD----TALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791
+++FV SRK + A+ + T +E + F + V R + S ++ + ++D
Sbjct: 565 MVVFVFSRKRCDENAQMLASMNLTTEVEKQHVRLFFSQ-CVQR-LKGSDKELPQVLTMRD 622
Query: 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNP 851
L GFA+HH+G+ +++VE LF G+V++L +T T A GVN+PA V+ ++
Sbjct: 623 LCLRGFAVHHSGILPILKEVVELLFQKGYVKILFATETFAMGVNMPARCVVFDSIMKHDG 682
Query: 852 EKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMN----QQLPIESQ 907
+ L+P + QM GRAGR D G III S + L N Q L +ES+
Sbjct: 683 TERRM--LNPGEYTQMAGRAGRRGLDLTGTVIIICKDSTVPQPDVLKNLISGQALRLESK 740
Query: 908 F 908
F
Sbjct: 741 F 741
Score = 66 (28.3 bits), Expect = 3.3e-10, Sum P(3) = 3.3e-10
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 660 HIRLVGLSATLPNYEDVALFL-RVNLEKGLFYFDNSYRPVPLSQ-QYIGIQVKKPLQRFQ 717
H+++V LSAT+PN + A ++ R+ K + RPVPL Y G K F+
Sbjct: 429 HVKIVMLSATVPNCVEFADWVGRIKNRK-INVISTDRRPVPLEHFLYTGQDGKTQKDLFK 487
Query: 718 LMN 720
+++
Sbjct: 488 IID 490
Score = 43 (20.2 bits), Expect = 3.3e-10, Sum P(3) = 3.3e-10
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 508 LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562
+ +++ + A T AGKT VA I AL + H + VY +P+KAL
Sbjct: 304 MERGESLFVAAHTSAGKTVVAEYAI----ALCQA------HKT-RAVYTSPIKAL 347
>UNIPROTKB|F1LP39 [details] [associations]
symbol:Skiv2l "Protein Skiv2l" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 RGD:1303059 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234 GO:GO:0055087
OMA:TRLDETC GeneTree:ENSGT00690000102154 IPI:IPI00417365
Ensembl:ENSRNOT00000000481 Uniprot:F1LP39
Length = 1206
Score = 168 (64.2 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 53/180 (29%), Positives = 92/180 (51%)
Query: 736 VLIFVHSRKETAKTARAIRD----TALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791
V++F SR + A + T+ E + FL+ ++R + S + + + +
Sbjct: 528 VVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQR-CLAR-LRGSDRQLPQVLHMSE 585
Query: 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNP 851
LL G +HH+G+ +++VE LF G V+VL +T T A GVN+PA TV+ + +
Sbjct: 586 LLRRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKH-- 643
Query: 852 EKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT-GH-SELR-YYLSLMNQQLPIESQF 908
+ + +L P + +QM GRAGR D G I++ G E+ + +M + ++SQF
Sbjct: 644 DGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQF 703
Score = 73 (30.8 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 41/170 (24%), Positives = 70/170 (41%)
Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDII 611
+ +Y +P+KAL + + N DV + L+GD L E + +I+TT ++
Sbjct: 314 RTIYTSPIKALSNQKFRDFRNTFG--DVGL--LTGDVQL---HPEASCLIMTTEILRSML 366
Query: 612 TRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671
SG L RG V E ++ EH+ ++ LSAT+P
Sbjct: 367 Y--SGSDVIRDLEWVIFDEVHYINDAERGVVWEEVLIML-------PEHVSIILLSATVP 417
Query: 672 NYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQ-YIGIQVKKPLQRFQLMN 720
N + A ++ + ++ RPVPL + G K + F L++
Sbjct: 418 NALEFADWIGRLKRRQIYVISTVARPVPLEHYLFTGNSPKTQGELFLLLD 467
Score = 58 (25.5 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 31/104 (29%), Positives = 47/104 (45%)
Query: 487 QPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSF 546
QPAF+ + + Q + L D++ + A T AGKT VA I AL +
Sbjct: 261 QPAFQWAFEPDVFQKQAILH-LEQHDSVFVAAHTSAGKTVVAEYAI----ALAQK----- 310
Query: 547 NHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590
H + +Y +P+KAL + + N DV + L+GD L
Sbjct: 311 -HMT-RTIYTSPIKALSNQKFRDFRNTFG--DVGL--LTGDVQL 348
>RGD|1303059 [details] [associations]
symbol:Skiv2l "superkiller viralicidic activity 2-like (S.
cerevisiae )" species:10116 "Rattus norvegicus" [GO:0055087 "Ski
complex" evidence=ISO] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
RGD:1303059 GO:GO:0005524 GO:GO:0003676 EMBL:BX883045
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG4581 InterPro:IPR025696 Pfam:PF13234 HOGENOM:HOG000163048
KO:K12599 CTD:6499 HOVERGEN:HBG060025 OrthoDB:EOG47H5P5
IPI:IPI00417365 RefSeq:NP_998724.1 UniGene:Rn.138027
ProteinModelPortal:Q6MG76 IntAct:Q6MG76 PhosphoSite:Q6MG76
PRIDE:Q6MG76 GeneID:294260 KEGG:rno:294260 UCSC:RGD:1303059
InParanoid:Q6MG76 NextBio:637849 ArrayExpress:Q6MG76
Genevestigator:Q6MG76 Uniprot:Q6MG76
Length = 1241
Score = 168 (64.2 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 53/180 (29%), Positives = 92/180 (51%)
Query: 736 VLIFVHSRKETAKTARAIRD----TALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791
V++F SR + A + T+ E + FL+ ++R + S + + + +
Sbjct: 563 VVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQR-CLAR-LRGSDRQLPQVLHMSE 620
Query: 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNP 851
LL G +HH+G+ +++VE LF G V+VL +T T A GVN+PA TV+ + +
Sbjct: 621 LLRRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKH-- 678
Query: 852 EKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT-GH-SELR-YYLSLMNQQLPIESQF 908
+ + +L P + +QM GRAGR D G I++ G E+ + +M + ++SQF
Sbjct: 679 DGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQF 738
Score = 73 (30.8 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 41/170 (24%), Positives = 70/170 (41%)
Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDII 611
+ +Y +P+KAL + + N DV + L+GD L E + +I+TT ++
Sbjct: 349 RTIYTSPIKALSNQKFRDFRNTFG--DVGL--LTGDVQL---HPEASCLIMTTEILRSML 401
Query: 612 TRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671
SG L RG V E ++ EH+ ++ LSAT+P
Sbjct: 402 Y--SGSDVIRDLEWVIFDEVHYINDAERGVVWEEVLIML-------PEHVSIILLSATVP 452
Query: 672 NYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQ-YIGIQVKKPLQRFQLMN 720
N + A ++ + ++ RPVPL + G K + F L++
Sbjct: 453 NALEFADWIGRLKRRQIYVISTVARPVPLEHYLFTGNSPKTQGELFLLLD 502
Score = 58 (25.5 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 31/104 (29%), Positives = 47/104 (45%)
Query: 487 QPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSF 546
QPAF+ + + Q + L D++ + A T AGKT VA I AL +
Sbjct: 296 QPAFQWAFEPDVFQKQAILH-LEQHDSVFVAAHTSAGKTVVAEYAI----ALAQK----- 345
Query: 547 NHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590
H + +Y +P+KAL + + N DV + L+GD L
Sbjct: 346 -HMT-RTIYTSPIKALSNQKFRDFRNTFG--DVGL--LTGDVQL 383
>CGD|CAL0002171 [details] [associations]
symbol:orf19.6425 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0055087 "Ski complex" evidence=IEA]
[GO:0070478 "nuclear-transcribed mRNA catabolic process, 3'-5'
exonucleolytic nonsense-mediated decay" evidence=IEA] [GO:0070481
"nuclear-transcribed mRNA catabolic process, non-stop decay"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
CGD:CAL0002171 GO:GO:0005524 GO:GO:0003676 EMBL:AACQ01000073
EMBL:AACQ01000072 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG4581 KO:K12599 RefSeq:XP_716180.1
RefSeq:XP_716263.1 ProteinModelPortal:Q5A337 STRING:Q5A337
GeneID:3642143 GeneID:3642220 KEGG:cal:CaO19.13783
KEGG:cal:CaO19.6425 Uniprot:Q5A337
Length = 1245
Score = 166 (63.5 bits), Expect = 4.3e-10, Sum P(3) = 4.3e-10
Identities = 45/153 (29%), Positives = 81/153 (52%)
Query: 737 LIFVHSRKETAKTARAIR----DTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDL 792
++FV S+K + A ++R + A E + F+ + +V R + + ++ + ++++
Sbjct: 583 VVFVFSKKRCEEYADSLRSVDFNNAREKSEIHMFI-DRAVGR-LKKEDRELPQILKIREM 640
Query: 793 LPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPE 852
L G A+HH G+ ++ +E LF V+VL +T T A G+NLP TVI + ++
Sbjct: 641 LGRGIAVHHGGLLPIVKECIEILFAKSLVKVLFATETFAMGLNLPTRTVIFSSMRKHDGR 700
Query: 853 KGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885
++ L P + QM GRAGR D G I++
Sbjct: 701 --SFRNLLPGEFTQMSGRAGRRGLDKTGTVIVM 731
Score = 83 (34.3 bits), Expect = 4.3e-10, Sum P(3) = 4.3e-10
Identities = 36/154 (23%), Positives = 65/154 (42%)
Query: 548 HSNY-KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPE 606
H N K +Y +P+KAL + + + D+ V ++GD + E +I+TT
Sbjct: 329 HRNMTKCIYTSPIKALSNQKFRDFKETFK--DIDVGLITGDVQINP---EANCLIMTTEI 383
Query: 607 KWDIITRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGL 666
++ R G + +RG V E ++ +H++ + L
Sbjct: 384 LRSMLYR--GADLIRDVEFVIFDEVHYVNDIDRGVVWEEVIIML-------PDHVKYILL 434
Query: 667 SATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPL 700
SAT+PN + A ++ +K ++ RPVPL
Sbjct: 435 SATVPNTFEFANWVGRTKQKDIYVISTPKRPVPL 468
Score = 62 (26.9 bits), Expect = 5.6e-08, Sum P(3) = 5.6e-08
Identities = 27/98 (27%), Positives = 43/98 (43%)
Query: 508 LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNY-KIVYVAPMKALVAEV 566
L D++ + A T AGKT VA I + H N K +Y +P+KAL +
Sbjct: 301 LEQGDSVFVAAHTSAGKTVVAEYAI------------AMAHRNMTKCIYTSPIKALSNQK 348
Query: 567 VGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTT 604
+ + D+ V ++GD + E +I+TT
Sbjct: 349 FRDFKETFK--DIDVGLITGDVQINP---EANCLIMTT 381
Score = 40 (19.1 bits), Expect = 4.3e-10, Sum P(3) = 4.3e-10
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 1192 FVHQFPKLILAAHVQPITRTVLKVELTITPDF 1223
+V + +L+ V+ + R + L + PD+
Sbjct: 1019 YVEYLDRYLLSQEVEKLERLISDENLELLPDY 1050
>WB|WBGene00012342 [details] [associations]
symbol:mtr-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0040011 InterPro:IPR018247
GO:GO:0003676 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281
GO:GO:0040020 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0040022 GO:GO:0008026 eggNOG:COG4581 EMBL:Z70271 PIR:T26282
RefSeq:NP_501757.1 ProteinModelPortal:Q23223 SMR:Q23223
MINT:MINT-6670291 STRING:Q23223 PaxDb:Q23223 EnsemblMetazoa:W08D2.7
GeneID:177824 KEGG:cel:CELE_W08D2.7 CTD:177824 WormBase:W08D2.7
GeneTree:ENSGT00690000102230 HOGENOM:HOG000163047 InParanoid:Q23223
KO:K12598 OMA:ENFQKAM NextBio:898538 InterPro:IPR025696
Pfam:PF13234 Uniprot:Q23223
Length = 1026
Score = 168 (64.2 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
Identities = 53/203 (26%), Positives = 97/203 (47%)
Query: 737 LIFVHSRKETAKTARAIRDTALENDTLGRFLKE--DSVSREILQSHTDMVKSNDLKDLLP 794
++F SRKE A +++D D +K +S ++ + + ++ LL
Sbjct: 377 IVFSFSRKECESYAISLKDMDFNKDHEKGMVKSVYESAIAQLSPEDQKLPQILNILPLLR 436
Query: 795 YGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKG 854
G +HH+G+ ++ +E LFG+G V+VL +T T + G+N+PA TV+ + ++
Sbjct: 437 RGIGVHHSGLMPILKETIEILFGEGLVKVLFATETFSMGLNMPARTVVFTSARKFDGSDN 496
Query: 855 AWTELSPLDIMQMLGRAGRPQYDSYGEGIII--TGHSELRYYLSLMNQQLPIESQFVSKL 912
+ ++ + +QM GRAGR D G I++ + S + P+ SQF
Sbjct: 497 RY--ITSGEYIQMAGRAGRRGKDDRGTVILMVDSAMSADDAKQIIKGATDPLNSQF---- 550
Query: 913 ADQLNAEIVLGTVQNAKEACNWI 935
+L +VL ++ A +WI
Sbjct: 551 --RLTYNMVLNLMRVEGMAVSWI 571
Score = 69 (29.3 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
Identities = 31/121 (25%), Positives = 54/121 (44%)
Query: 470 LDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAV 529
+ PN + ++ E +PA QL+ Q + + + ++L+ A T AGKT VA
Sbjct: 101 IPPNAEFAELREN-SGTEPAKYYPFQLDAFQKQAIL-CIDNNQSVLVSAHTSAGKTVVAT 158
Query: 530 LTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQT 589
I + L +++Y +P+KAL + L + DV + ++GD T
Sbjct: 159 YAIAKCL-----------REKQRVIYTSPIKALSNQKYRELEEEFK--DVGL--MTGDVT 203
Query: 590 L 590
L
Sbjct: 204 L 204
Score = 67 (28.6 bits), Expect = 9.4e-10, Sum P(2) = 9.4e-10
Identities = 37/154 (24%), Positives = 67/154 (43%)
Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDII 611
+++Y +P+KAL + L + DV + ++GD TL + + +++TT ++
Sbjct: 170 RVIYTSPIKALSNQKYRELEEEFK--DVGL--MTGDVTLNP---DASCLVMTTEILRSML 222
Query: 612 TRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671
R G ++ RG V E + I +K +I+ LSAT+P
Sbjct: 223 YR--GSEIMKEVGWVVYDEIHYMRDKERGVVWEETI------ILMSK-NIKQAFLSATIP 273
Query: 672 NYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYI 705
N A ++ ++ + YRP PL Q +I
Sbjct: 274 NARQFAQWVASIKQQPVNVVYTDYRPTPL-QHWI 306
>UNIPROTKB|F5H7B0 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL662849 EMBL:AL645922
InterPro:IPR025696 Pfam:PF13234 HGNC:HGNC:10898 ChiTaRS:SKIV2L
IPI:IPI01021910 SMR:F5H7B0 Ensembl:ENST00000544581
Ensembl:ENST00000546549 Uniprot:F5H7B0
Length = 1053
Score = 168 (64.2 bits), Expect = 6.2e-10, Sum P(2) = 6.2e-10
Identities = 53/180 (29%), Positives = 92/180 (51%)
Query: 736 VLIFVHSRKETAKTARAIRD----TALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791
V++F SR + A + T+ E + FL+ ++R + S + + + +
Sbjct: 376 VVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQR-CLAR-LRGSDRQLPQVLHMSE 433
Query: 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNP 851
LL G +HH+G+ +++VE LF G V+VL +T T A GVN+PA TV+ + +
Sbjct: 434 LLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKH-- 491
Query: 852 EKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT-GH-SELR-YYLSLMNQQLPIESQF 908
+ + +L P + +QM GRAGR D G I++ G E+ + +M + ++SQF
Sbjct: 492 DGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQF 551
Score = 69 (29.3 bits), Expect = 6.2e-10, Sum P(2) = 6.2e-10
Identities = 40/170 (23%), Positives = 70/170 (41%)
Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDII 611
+ +Y +P+KAL + + N DV + L+GD L E + +I+TT ++
Sbjct: 162 RTIYTSPIKALSNQKFRDFRNTFG--DVGL--LTGDVQL---HPEASCLIMTTEILRSML 214
Query: 612 TRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671
SG L RG V E ++ +H+ ++ LSAT+P
Sbjct: 215 Y--SGSDVIRDLEWVIFDEVHYINDVERGVVWEEVLIML-------PDHVSIILLSATVP 265
Query: 672 NYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQ-YIGIQVKKPLQRFQLMN 720
N + A ++ + ++ RPVPL + G K + F L++
Sbjct: 266 NALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGNSSKTQGELFLLLD 315
Score = 57 (25.1 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 31/104 (29%), Positives = 47/104 (45%)
Query: 487 QPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSF 546
QPAF+ + + Q + L D++ + A T AGKT VA I AL +
Sbjct: 109 QPAFQWAFEPDVFQKQAILH-LERHDSVFVAAHTSAGKTVVAEYAI----ALAQK----- 158
Query: 547 NHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590
H + +Y +P+KAL + + N DV + L+GD L
Sbjct: 159 -HMT-RTIYTSPIKALSNQKFRDFRNTFG--DVGL--LTGDVQL 196
>UNIPROTKB|F8VS23 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL844853 EMBL:BX005143
EMBL:CR759782 EMBL:CR753822 EMBL:CR753845 InterPro:IPR025696
Pfam:PF13234 HGNC:HGNC:10898 ChiTaRS:SKIV2L IPI:IPI00945125
SMR:F8VS23 Ensembl:ENST00000546908 Ensembl:ENST00000552714
Ensembl:ENST00000552746 Ensembl:ENST00000553255 UCSC:uc011ghl.1
Uniprot:F8VS23
Length = 1053
Score = 168 (64.2 bits), Expect = 6.2e-10, Sum P(2) = 6.2e-10
Identities = 53/180 (29%), Positives = 92/180 (51%)
Query: 736 VLIFVHSRKETAKTARAIRD----TALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791
V++F SR + A + T+ E + FL+ ++R + S + + + +
Sbjct: 376 VVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQR-CLAR-LRGSDRQLPQVLHMSE 433
Query: 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNP 851
LL G +HH+G+ +++VE LF G V+VL +T T A GVN+PA TV+ + +
Sbjct: 434 LLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKH-- 491
Query: 852 EKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT-GH-SELR-YYLSLMNQQLPIESQF 908
+ + +L P + +QM GRAGR D G I++ G E+ + +M + ++SQF
Sbjct: 492 DGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQF 551
Score = 69 (29.3 bits), Expect = 6.2e-10, Sum P(2) = 6.2e-10
Identities = 40/170 (23%), Positives = 70/170 (41%)
Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDII 611
+ +Y +P+KAL + + N DV + L+GD L E + +I+TT ++
Sbjct: 162 RTIYTSPIKALSNQKFRDFRNTFG--DVGL--LTGDVQL---HPEASCLIMTTEILRSML 214
Query: 612 TRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671
SG L RG V E ++ +H+ ++ LSAT+P
Sbjct: 215 Y--SGSDVIRDLEWVIFDEVHYINDVERGVVWEEVLIML-------PDHVSIILLSATVP 265
Query: 672 NYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQ-YIGIQVKKPLQRFQLMN 720
N + A ++ + ++ RPVPL + G K + F L++
Sbjct: 266 NALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGNSSKTQGELFLLLD 315
Score = 57 (25.1 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 31/104 (29%), Positives = 47/104 (45%)
Query: 487 QPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSF 546
QPAF+ + + Q + L D++ + A T AGKT VA I AL +
Sbjct: 109 QPAFQWAFEPDVFQKQAILH-LERHDSVFVAAHTSAGKTVVAEYAI----ALAQK----- 158
Query: 547 NHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590
H + +Y +P+KAL + + N DV + L+GD L
Sbjct: 159 -HMT-RTIYTSPIKALSNQKFRDFRNTFG--DVGL--LTGDVQL 196
>UNIPROTKB|B4DM01 [details] [associations]
symbol:SKIV2L "cDNA FLJ57529, highly similar to Helicase
SKI2W (EC 3.6.1.-)" species:9606 "Homo sapiens" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL662849 eggNOG:COG4581
InterPro:IPR025696 Pfam:PF13234 UniGene:Hs.89864 HGNC:HGNC:10898
HOVERGEN:HBG060025 OrthoDB:EOG47H5P5 ChiTaRS:SKIV2L EMBL:AK297230
IPI:IPI01014021 SMR:B4DM01 STRING:B4DM01 Ensembl:ENST00000551164
Uniprot:B4DM01
Length = 1088
Score = 168 (64.2 bits), Expect = 6.8e-10, Sum P(2) = 6.8e-10
Identities = 53/180 (29%), Positives = 92/180 (51%)
Query: 736 VLIFVHSRKETAKTARAIRD----TALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791
V++F SR + A + T+ E + FL+ ++R + S + + + +
Sbjct: 411 VVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQR-CLAR-LRGSDRQLPQVLHMSE 468
Query: 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNP 851
LL G +HH+G+ +++VE LF G V+VL +T T A GVN+PA TV+ + +
Sbjct: 469 LLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKH-- 526
Query: 852 EKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT-GH-SELR-YYLSLMNQQLPIESQF 908
+ + +L P + +QM GRAGR D G I++ G E+ + +M + ++SQF
Sbjct: 527 DGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQF 586
Score = 69 (29.3 bits), Expect = 6.8e-10, Sum P(2) = 6.8e-10
Identities = 40/170 (23%), Positives = 70/170 (41%)
Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDII 611
+ +Y +P+KAL + + N DV + L+GD L E + +I+TT ++
Sbjct: 197 RTIYTSPIKALSNQKFRDFRNTFG--DVGL--LTGDVQL---HPEASCLIMTTEILRSML 249
Query: 612 TRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671
SG L RG V E ++ +H+ ++ LSAT+P
Sbjct: 250 Y--SGSDVIRDLEWVIFDEVHYINDVERGVVWEEVLIML-------PDHVSIILLSATVP 300
Query: 672 NYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQ-YIGIQVKKPLQRFQLMN 720
N + A ++ + ++ RPVPL + G K + F L++
Sbjct: 301 NALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGNSSKTQGELFLLLD 350
Score = 57 (25.1 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 31/104 (29%), Positives = 47/104 (45%)
Query: 487 QPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSF 546
QPAF+ + + Q + L D++ + A T AGKT VA I AL +
Sbjct: 144 QPAFQWAFEPDVFQKQAILH-LERHDSVFVAAHTSAGKTVVAEYAI----ALAQK----- 193
Query: 547 NHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590
H + +Y +P+KAL + + N DV + L+GD L
Sbjct: 194 -HMT-RTIYTSPIKALSNQKFRDFRNTFG--DVGL--LTGDVQL 231
>UNIPROTKB|F8VNU1 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL844853 EMBL:BX005143
EMBL:CR759782 EMBL:CR753822 EMBL:CR753845 InterPro:IPR025696
Pfam:PF13234 HGNC:HGNC:10898 ChiTaRS:SKIV2L IPI:IPI01022196
SMR:F8VNU1 Ensembl:ENST00000546742 Ensembl:ENST00000547054
Ensembl:ENST00000550012 Ensembl:ENST00000550640 UCSC:uc011ghk.1
Uniprot:F8VNU1
Length = 1088
Score = 168 (64.2 bits), Expect = 6.8e-10, Sum P(2) = 6.8e-10
Identities = 53/180 (29%), Positives = 92/180 (51%)
Query: 736 VLIFVHSRKETAKTARAIRD----TALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791
V++F SR + A + T+ E + FL+ ++R + S + + + +
Sbjct: 411 VVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQR-CLAR-LRGSDRQLPQVLHMSE 468
Query: 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNP 851
LL G +HH+G+ +++VE LF G V+VL +T T A GVN+PA TV+ + +
Sbjct: 469 LLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKH-- 526
Query: 852 EKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT-GH-SELR-YYLSLMNQQLPIESQF 908
+ + +L P + +QM GRAGR D G I++ G E+ + +M + ++SQF
Sbjct: 527 DGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQF 586
Score = 69 (29.3 bits), Expect = 6.8e-10, Sum P(2) = 6.8e-10
Identities = 40/170 (23%), Positives = 70/170 (41%)
Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDII 611
+ +Y +P+KAL + + N DV + L+GD L E + +I+TT ++
Sbjct: 197 RTIYTSPIKALSNQKFRDFRNTFG--DVGL--LTGDVQL---HPEASCLIMTTEILRSML 249
Query: 612 TRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671
SG L RG V E ++ +H+ ++ LSAT+P
Sbjct: 250 Y--SGSDVIRDLEWVIFDEVHYINDVERGVVWEEVLIML-------PDHVSIILLSATVP 300
Query: 672 NYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQ-YIGIQVKKPLQRFQLMN 720
N + A ++ + ++ RPVPL + G K + F L++
Sbjct: 301 NALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGNSSKTQGELFLLLD 350
Score = 57 (25.1 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 31/104 (29%), Positives = 47/104 (45%)
Query: 487 QPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSF 546
QPAF+ + + Q + L D++ + A T AGKT VA I AL +
Sbjct: 144 QPAFQWAFEPDVFQKQAILH-LERHDSVFVAAHTSAGKTVVAEYAI----ALAQK----- 193
Query: 547 NHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590
H + +Y +P+KAL + + N DV + L+GD L
Sbjct: 194 -HMT-RTIYTSPIKALSNQKFRDFRNTFG--DVGL--LTGDVQL 231
>UNIPROTKB|E2RSD6 [details] [associations]
symbol:SKIV2L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0055087 "Ski complex" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234
GO:GO:0055087 KO:K12599 OMA:TRLDETC GeneTree:ENSGT00690000102154
CTD:6499 EMBL:AAEX03008222 RefSeq:XP_538841.2
ProteinModelPortal:E2RSD6 Ensembl:ENSCAFT00000001053 GeneID:481720
KEGG:cfa:481720 NextBio:20856463 Uniprot:E2RSD6
Length = 1246
Score = 168 (64.2 bits), Expect = 7.4e-10, Sum P(2) = 7.4e-10
Identities = 53/180 (29%), Positives = 92/180 (51%)
Query: 736 VLIFVHSRKETAKTARAIRD----TALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791
V++F SR + A + T+ E + FL+ ++R + S + + + +
Sbjct: 569 VVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQR-CLAR-LRGSDRQLPQVLHMSE 626
Query: 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNP 851
LL G +HH+G+ +++VE LF G V+VL +T T A GVN+PA TV+ + +
Sbjct: 627 LLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKH-- 684
Query: 852 EKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT-GH-SELR-YYLSLMNQQLPIESQF 908
+ + +L P + +QM GRAGR D G I++ G E+ + +M + ++SQF
Sbjct: 685 DGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQF 744
Score = 70 (29.7 bits), Expect = 7.4e-10, Sum P(2) = 7.4e-10
Identities = 40/170 (23%), Positives = 70/170 (41%)
Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDII 611
+ +Y +P+KAL + + N DV + L+GD L E + +I+TT ++
Sbjct: 355 RTIYTSPIKALSNQKFRDFRNTFG--DVGL--LTGDVQL---HPEASCLIMTTEILRSML 407
Query: 612 TRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671
SG L RG V E ++ +H+ ++ LSAT+P
Sbjct: 408 Y--SGSDVIRDLEWVIFDEVHYINDAERGVVWEEVLIML-------PDHVSIILLSATVP 458
Query: 672 NYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQ-YIGIQVKKPLQRFQLMN 720
N + A ++ + ++ RPVPL + G K + F L++
Sbjct: 459 NALEFADWIGRLKRRQIYVISTVARPVPLEHYLFTGNSPKTQGELFLLLD 508
Score = 57 (25.1 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 31/104 (29%), Positives = 47/104 (45%)
Query: 487 QPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSF 546
QPAF+ + + Q + L D++ + A T AGKT VA I AL +
Sbjct: 302 QPAFQWSFEPDVFQKQAILH-LERHDSVFVAAHTSAGKTVVAEYAI----ALAQK----- 351
Query: 547 NHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590
H + +Y +P+KAL + + N DV + L+GD L
Sbjct: 352 -HMT-RTIYTSPIKALSNQKFRDFRNTFG--DVGL--LTGDVQL 389
Score = 37 (18.1 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 696 RPVPLSQQYIGIQVKKPLQRF 716
+PVP Q I + V P+ F
Sbjct: 276 KPVPQEQWAIPVDVTSPVGDF 296
>UNIPROTKB|E1BMS0 [details] [associations]
symbol:LOC100139548 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0055087 "Ski complex" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234
GO:GO:0055087 OMA:TRLDETC GeneTree:ENSGT00690000102154
EMBL:DAAA02055371 IPI:IPI00690289 RefSeq:XP_003583920.1
RefSeq:XP_003587743.1 Ensembl:ENSBTAT00000007339 GeneID:100139548
KEGG:bta:100139548 Uniprot:E1BMS0
Length = 1246
Score = 168 (64.2 bits), Expect = 7.4e-10, Sum P(2) = 7.4e-10
Identities = 53/180 (29%), Positives = 92/180 (51%)
Query: 736 VLIFVHSRKETAKTARAIRD----TALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791
V++F SR + A + T+ E + FL+ ++R + S + + + +
Sbjct: 569 VVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQR-CLAR-LRGSDRQLPQVLHMSE 626
Query: 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNP 851
LL G +HH+G+ +++VE LF G V+VL +T T A GVN+PA TV+ + +
Sbjct: 627 LLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKH-- 684
Query: 852 EKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT-GH-SELR-YYLSLMNQQLPIESQF 908
+ + +L P + +QM GRAGR D G I++ G E+ + +M + ++SQF
Sbjct: 685 DGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQF 744
Score = 70 (29.7 bits), Expect = 7.4e-10, Sum P(2) = 7.4e-10
Identities = 40/170 (23%), Positives = 70/170 (41%)
Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDII 611
+ +Y +P+KAL + + N DV + L+GD L E + +I+TT ++
Sbjct: 355 RTIYTSPIKALSNQKFRDFRNTFG--DVGL--LTGDVQL---HPEASCLIMTTEILRSML 407
Query: 612 TRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671
SG L RG V E ++ +H+ ++ LSAT+P
Sbjct: 408 Y--SGSDVIRDLEWVIFDEVHYINDAERGVVWEEVLIML-------PDHVSIILLSATVP 458
Query: 672 NYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQ-YIGIQVKKPLQRFQLMN 720
N + A ++ + ++ RPVPL + G K + F L++
Sbjct: 459 NALEFADWIGRLKRRQIYVISTVARPVPLEHYLFTGNSPKTQGELFLLLD 508
Score = 57 (25.1 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 31/104 (29%), Positives = 47/104 (45%)
Query: 487 QPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSF 546
QPAF+ + + Q + L D++ + A T AGKT VA I AL +
Sbjct: 302 QPAFQWAFEPDVFQKQAILH-LERHDSVFVAAHTSAGKTVVAEYAI----ALAQK----- 351
Query: 547 NHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590
H + +Y +P+KAL + + N DV + L+GD L
Sbjct: 352 -HMT-RTIYTSPIKALSNQKFRDFRNTFG--DVGL--LTGDVQL 389
>UNIPROTKB|F1RQW4 [details] [associations]
symbol:SKIV2L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0055087 "Ski complex" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234
GO:GO:0055087 OMA:TRLDETC GeneTree:ENSGT00690000102154
EMBL:CT956038 Ensembl:ENSSSCT00000001566 ArrayExpress:F1RQW4
Uniprot:F1RQW4
Length = 1246
Score = 168 (64.2 bits), Expect = 7.4e-10, Sum P(2) = 7.4e-10
Identities = 53/180 (29%), Positives = 92/180 (51%)
Query: 736 VLIFVHSRKETAKTARAIRD----TALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791
V++F SR + A + T+ E + FL+ ++R + S + + + +
Sbjct: 569 VVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQR-CLAR-LRGSDRQLPQVLHMSE 626
Query: 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNP 851
LL G +HH+G+ +++VE LF G V+VL +T T A GVN+PA TV+ + +
Sbjct: 627 LLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKH-- 684
Query: 852 EKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT-GH-SELR-YYLSLMNQQLPIESQF 908
+ + +L P + +QM GRAGR D G I++ G E+ + +M + ++SQF
Sbjct: 685 DGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQF 744
Score = 70 (29.7 bits), Expect = 7.4e-10, Sum P(2) = 7.4e-10
Identities = 40/170 (23%), Positives = 70/170 (41%)
Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDII 611
+ +Y +P+KAL + + N DV + L+GD L E + +I+TT ++
Sbjct: 355 RTIYTSPIKALSNQKFRDFRNTFG--DVGL--LTGDVQL---HPEASCLIMTTEILRSML 407
Query: 612 TRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671
SG L RG V E ++ +H+ ++ LSAT+P
Sbjct: 408 Y--SGSDVIRDLEWVIFDEVHYINDAERGVVWEEVLIML-------PDHVSIILLSATVP 458
Query: 672 NYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQ-YIGIQVKKPLQRFQLMN 720
N + A ++ + ++ RPVPL + G K + F L++
Sbjct: 459 NALEFADWIGRLKRRQIYVISTVARPVPLEHYLFTGNSPKTQGELFLLLD 508
Score = 57 (25.1 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 31/104 (29%), Positives = 47/104 (45%)
Query: 487 QPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSF 546
QPAF+ + + Q + L D++ + A T AGKT VA I AL +
Sbjct: 302 QPAFQWAFEPDVFQKQAILH-LERHDSVFVAAHTSAGKTVVAEYAI----ALAQK----- 351
Query: 547 NHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590
H + +Y +P+KAL + + N DV + L+GD L
Sbjct: 352 -HMT-RTIYTSPIKALSNQKFRDFRNTFG--DVGL--LTGDVQL 389
>UNIPROTKB|F1MJX4 [details] [associations]
symbol:SKIV2L2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0000460 "maturation of 5.8S rRNA" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000178 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000460 GO:GO:0008026
GeneTree:ENSGT00690000102230 OMA:ENFQKAM InterPro:IPR025696
Pfam:PF13234 EMBL:DAAA02050346 EMBL:DAAA02050343 EMBL:DAAA02050344
EMBL:DAAA02050345 IPI:IPI00839454 Ensembl:ENSBTAT00000047363
Uniprot:F1MJX4
Length = 937
Score = 165 (63.1 bits), Expect = 8.0e-10, Sum P(3) = 8.0e-10
Identities = 50/168 (29%), Positives = 85/168 (50%)
Query: 726 KVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVK 785
K++ V+IF S+K+ A A++ T L+ +T +E + E+ + D +
Sbjct: 377 KMIMERNFQPVIIFSFSKKDCE--AYALQMTKLDFNTD----EEKKMVEEVFSNAIDCLS 430
Query: 786 SNDLK-----DLLPY---GFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLP 837
D K ++LP G IHH G+ ++ +E LF +G ++ L +T T A G+N+P
Sbjct: 431 DEDKKLPQVENVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMP 490
Query: 838 AHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885
A TV+ + ++ + W +S + +QM GRAGR D GI+I
Sbjct: 491 ARTVLFTNARKFDGKDFRW--ISSGEYIQMSGRAGRRGMDD--RGIVI 534
Score = 69 (29.3 bits), Expect = 8.0e-10, Sum P(3) = 8.0e-10
Identities = 38/157 (24%), Positives = 67/157 (42%)
Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDII 611
++++ +P+KAL + + Q DV + ++GD T+ + +++TT ++
Sbjct: 182 RVIFTSPIKALSNQKYREMYEEFQ--DVGL--MTGDVTINPTA---SCLVMTTEILRSML 234
Query: 612 TRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671
R G ++ RG V E + +++ V LSAT+P
Sbjct: 235 YR--GSEVMREVAWVIFDEIHYMRDSERGVVWEETII-------LLPDNVHYVFLSATIP 285
Query: 672 NYEDVALFLRVNLEKG---LFYFDNSYRPVPLSQQYI 705
N A ++ +L K + Y D YRP PL Q YI
Sbjct: 286 NARQFAEWI-CHLHKQPCHVIYTD--YRPTPL-QHYI 318
Score = 54 (24.1 bits), Expect = 2.6e-08, Sum P(3) = 2.6e-08
Identities = 25/89 (28%), Positives = 41/89 (46%)
Query: 505 KSALSSADN---ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561
+ A+ DN +L+ A T AGKT A I LAL ++++ +P+KA
Sbjct: 143 REAIQCVDNNQSVLVSAHTSAGKTVCAEYAIA--LALREKQ---------RVIFTSPIKA 191
Query: 562 LVAEVVGNLSNRLQMYDVKVRELSGDQTL 590
L + + Q DV + ++GD T+
Sbjct: 192 LSNQKYREMYEEFQ--DVGL--MTGDVTI 216
Score = 48 (22.0 bits), Expect = 8.0e-10, Sum P(3) = 8.0e-10
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 131 DEILAVLKNDAVKNPDKKKEIEK 153
DE+ +V ++D+ P KK+ EK
Sbjct: 7 DELFSVFEDDSTTAPGAKKDKEK 29
>SGD|S000003586 [details] [associations]
symbol:MTR4 "ATP-dependent 3'-5' RNA helicase of the DExD/H
family" species:4932 "Saccharomyces cerevisiae" [GO:0016491
"oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0034475 "U4 snRNA 3'-end processing"
evidence=IMP] [GO:0000467 "exonucleolytic trimming to generate
mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016075 "rRNA catabolic process" evidence=IMP] [GO:0043629
"ncRNA polyadenylation" evidence=IDA] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=IGI;IDA]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=IMP] [GO:0071031 "nuclear mRNA surveillance of
mRNA 3'-end processing" evidence=IGI;IMP] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0031499 "TRAMP complex" evidence=IDA;IPI] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0034459 "ATP-dependent 3'-5' RNA
helicase activity" evidence=IMP;IDA] [GO:0034476 "U5 snRNA 3'-end
processing" evidence=IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0071049
"nuclear retention of pre-mRNA with aberrant 3'-ends at the site of
transcription" evidence=IGI] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0071051
"polyadenylation-dependent snoRNA 3'-end processing" evidence=IMP]
InterPro:IPR001650 InterPro:IPR011254 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
SGD:S000003586 GO:GO:0005524 GO:GO:0005730 EMBL:BK006943
GO:GO:0016491 GO:GO:0031499 GO:GO:0043629 GO:GO:0071035
GO:GO:0071038 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
SUPFAM:SSF56821 GO:GO:0000467 GO:GO:0071042 GO:GO:0071051
GO:GO:0008143 GO:GO:0034459 eggNOG:COG4581 GO:GO:0034475
GO:GO:0034476 GeneTree:ENSGT00690000102230 HOGENOM:HOG000163047
KO:K12598 OMA:ENFQKAM InterPro:IPR025696 Pfam:PF13234
OrthoDB:EOG4S1XG7 GO:GO:0071049 EMBL:Z49325 PIR:S56822
RefSeq:NP_012485.1 PDB:2XGJ PDB:3L9O PDBsum:2XGJ PDBsum:3L9O
ProteinModelPortal:P47047 SMR:P47047 DIP:DIP-6394N IntAct:P47047
MINT:MINT-620894 STRING:P47047 PaxDb:P47047 PeptideAtlas:P47047
EnsemblFungi:YJL050W GeneID:853397 KEGG:sce:YJL050W CYGD:YJL050w
EvolutionaryTrace:P47047 NextBio:973882 Genevestigator:P47047
GermOnline:YJL050W Uniprot:P47047
Length = 1073
Score = 155 (59.6 bits), Expect = 9.0e-10, Sum P(3) = 9.0e-10
Identities = 47/166 (28%), Positives = 86/166 (51%)
Query: 726 KVVAVAGKHQ---VLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTD 782
K+V + K + V++F S+++ + A + +D L + + L TD
Sbjct: 396 KIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETD 455
Query: 783 MVKSNDLKDLLPY---GFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAH 839
+ +K +LP G IHH+G+ ++++E LF +G ++VL +T T + G+N+PA
Sbjct: 456 R-ELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAK 514
Query: 840 TVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885
TV+ + ++ ++ W +S + +QM GRAGR D GI+I
Sbjct: 515 TVVFTSVRKWDGQQFRW--VSGGEYIQMSGRAGRRGLDD--RGIVI 556
Score = 65 (27.9 bits), Expect = 9.0e-10, Sum P(3) = 9.0e-10
Identities = 35/155 (22%), Positives = 68/155 (43%)
Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDII 611
+++Y +P+KAL + L + DV + ++GD T+ + +++TT ++
Sbjct: 194 RVIYTSPIKALSNQKYRELL--AEFGDVGL--MTGDITINP---DAGCLVMTTEILRSML 246
Query: 612 TRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671
R G ++ RG V E + + +R V LSAT+P
Sbjct: 247 YR--GSEVMREVAWVIFDEVHYMRDKERGVVWEETII-------LLPDKVRYVFLSATIP 297
Query: 672 NYEDVALFL-RVNLEKGLFYFDNSYRPVPLSQQYI 705
N + A ++ +++ + + N +RP PL Q Y+
Sbjct: 298 NAMEFAEWICKIHSQPCHIVYTN-FRPTPL-QHYL 330
Score = 64 (27.6 bits), Expect = 9.0e-10, Sum P(3) = 9.0e-10
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 506 SALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562
S + +++L+ A T AGKT VA I Q L N+ +++Y +P+KAL
Sbjct: 159 SCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK-NKQ----------RVIYTSPIKAL 204
>UNIPROTKB|Q15477 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0055087 "Ski
complex" evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=TAS] Reactome:REACT_17015 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 EMBL:AF019413 EMBL:AL662849 EMBL:AL645922
eggNOG:COG4581 InterPro:IPR025696 Pfam:PF13234 GO:GO:0055087
HOGENOM:HOG000163048 KO:K12599 OMA:TRLDETC EMBL:U09877 EMBL:X98378
EMBL:Z48796 IPI:IPI00414819 PIR:S56752 RefSeq:NP_008860.4
UniGene:Hs.89864 ProteinModelPortal:Q15477 SMR:Q15477 IntAct:Q15477
STRING:Q15477 PhosphoSite:Q15477 DMDM:3123284 PaxDb:Q15477
PRIDE:Q15477 DNASU:6499 Ensembl:ENST00000375394
Ensembl:ENST00000383336 Ensembl:ENST00000412823
Ensembl:ENST00000421789 Ensembl:ENST00000429465
Ensembl:ENST00000448219 GeneID:6499 KEGG:hsa:6499 UCSC:uc003nyn.1
CTD:6499 GeneCards:GC06P031926 H-InvDB:HIX0005742
H-InvDB:HIX0166115 H-InvDB:HIX0166390 H-InvDB:HIX0166908
H-InvDB:HIX0167165 H-InvDB:HIX0167404 HGNC:HGNC:10898 MIM:600478
MIM:614602 neXtProt:NX_Q15477 Orphanet:84064 PharmGKB:PA35798
HOVERGEN:HBG060025 InParanoid:Q15477 OrthoDB:EOG47H5P5
PhylomeDB:Q15477 ChiTaRS:SKIV2L GenomeRNAi:6499 NextBio:25263
ArrayExpress:Q15477 Bgee:Q15477 CleanEx:HS_SKIV2L
Genevestigator:Q15477 Uniprot:Q15477
Length = 1246
Score = 168 (64.2 bits), Expect = 9.4e-10, Sum P(2) = 9.4e-10
Identities = 53/180 (29%), Positives = 92/180 (51%)
Query: 736 VLIFVHSRKETAKTARAIRD----TALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791
V++F SR + A + T+ E + FL+ ++R + S + + + +
Sbjct: 569 VVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQR-CLAR-LRGSDRQLPQVLHMSE 626
Query: 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNP 851
LL G +HH+G+ +++VE LF G V+VL +T T A GVN+PA TV+ + +
Sbjct: 627 LLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKH-- 684
Query: 852 EKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT-GH-SELR-YYLSLMNQQLPIESQF 908
+ + +L P + +QM GRAGR D G I++ G E+ + +M + ++SQF
Sbjct: 685 DGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQF 744
Score = 69 (29.3 bits), Expect = 9.4e-10, Sum P(2) = 9.4e-10
Identities = 40/170 (23%), Positives = 70/170 (41%)
Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDII 611
+ +Y +P+KAL + + N DV + L+GD L E + +I+TT ++
Sbjct: 355 RTIYTSPIKALSNQKFRDFRNTFG--DVGL--LTGDVQL---HPEASCLIMTTEILRSML 407
Query: 612 TRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671
SG L RG V E ++ +H+ ++ LSAT+P
Sbjct: 408 Y--SGSDVIRDLEWVIFDEVHYINDVERGVVWEEVLIML-------PDHVSIILLSATVP 458
Query: 672 NYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQ-YIGIQVKKPLQRFQLMN 720
N + A ++ + ++ RPVPL + G K + F L++
Sbjct: 459 NALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGNSSKTQGELFLLLD 508
Score = 57 (25.1 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 31/104 (29%), Positives = 47/104 (45%)
Query: 487 QPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSF 546
QPAF+ + + Q + L D++ + A T AGKT VA I AL +
Sbjct: 302 QPAFQWAFEPDVFQKQAILH-LERHDSVFVAAHTSAGKTVVAEYAI----ALAQK----- 351
Query: 547 NHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590
H + +Y +P+KAL + + N DV + L+GD L
Sbjct: 352 -HMT-RTIYTSPIKALSNQKFRDFRNTFG--DVGL--LTGDVQL 389
>RGD|1560014 [details] [associations]
symbol:Ddx60 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 60"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=ISO] [GO:0003725
"double-stranded RNA binding" evidence=ISO] [GO:0003727
"single-stranded RNA binding" evidence=ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0009615 "response to virus" evidence=ISO] [GO:0051607 "defense
response to virus" evidence=ISO] [GO:1900245 "positive regulation
of MDA-5 signaling pathway" evidence=ISO] [GO:1900246 "positive
regulation of RIG-I signaling pathway" evidence=ISO]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1560014 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GeneTree:ENSGT00690000102154 IPI:IPI00358301
Ensembl:ENSRNOT00000019667 Uniprot:F1M4N8
Length = 1304
Score = 154 (59.3 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 36/97 (37%), Positives = 52/97 (53%)
Query: 785 KSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIK 844
K + LK L G HH+ MT ++QLVE LF G ++V+ +T TL+ G+N+P +V+
Sbjct: 841 KGDTLKKLARRGIGYHHSSMTNKEKQLVEILFRKGFIRVVTATRTLSLGINMPCKSVVFA 900
Query: 845 GTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGE 881
+Y L L+ QM GRAGR D G+
Sbjct: 901 QNSVY---------LDALNYRQMSGRAGRRGQDLLGD 928
Score = 83 (34.3 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 27/101 (26%), Positives = 49/101 (48%)
Query: 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571
++ ++ APT +GKT + + + L +++G +VYVAP KALV +V +
Sbjct: 371 ESAVIVAPTSSGKTYASYYCM--EKVLKESNEGV-------VVYVAPTKALVNQVAATVQ 421
Query: 572 NRLQMYDVKVRELSGDQTLT-RQQIEETQIIVTTPEKWDII 611
NR L G T + +Q+++T P ++I+
Sbjct: 422 NRYTKNMPAGEVLCGVFTSDYHHEALNSQVLITMPACFEIL 462
>UNIPROTKB|F5H7E2 [details] [associations]
symbol:SKIV2L2 "Superkiller viralicidic activity 2-like 2"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696
Pfam:PF13234 HGNC:HGNC:18734 ChiTaRS:SKIV2L2 EMBL:AC010480
EMBL:AC020728 IPI:IPI01011073 ProteinModelPortal:F5H7E2 SMR:F5H7E2
Ensembl:ENST00000545714 UCSC:uc011cqi.2 ArrayExpress:F5H7E2
Bgee:F5H7E2 Uniprot:F5H7E2
Length = 941
Score = 164 (62.8 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 50/168 (29%), Positives = 83/168 (49%)
Query: 726 KVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVK 785
K++ V+IF S+K+ A A++ T L+ +T +E + E+ + D +
Sbjct: 278 KMIMERNFQPVIIFSFSKKDCE--AYALQMTKLDFNTD----EEKKMVEEVFSNAIDCLS 331
Query: 786 SNDLK--------DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLP 837
D K LL G IHH G+ ++ +E LF +G ++ L +T T A G+N+P
Sbjct: 332 DEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMP 391
Query: 838 AHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885
A TV+ + ++ + W +S + +QM GRAGR D GI+I
Sbjct: 392 ARTVLFTNARKFDGKDFRW--ISSGEYIQMSGRAGRRGMDD--RGIVI 435
Score = 69 (29.3 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 38/157 (24%), Positives = 67/157 (42%)
Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDII 611
++++ +P+KAL + + Q DV + ++GD T+ + +++TT ++
Sbjct: 83 RVIFTSPIKALSNQKYREMYEEFQ--DVGL--MTGDVTINPTA---SCLVMTTEILRSML 135
Query: 612 TRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671
R G ++ RG V E + +++ V LSAT+P
Sbjct: 136 YR--GSEVMREVAWVIFDEIHYMRDSERGVVWEETII-------LLPDNVHYVFLSATIP 186
Query: 672 NYEDVALFLRVNLEKG---LFYFDNSYRPVPLSQQYI 705
N A ++ +L K + Y D YRP PL Q YI
Sbjct: 187 NARQFAEWI-CHLHKQPCHVIYTD--YRPTPL-QHYI 219
Score = 54 (24.1 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 25/89 (28%), Positives = 41/89 (46%)
Query: 505 KSALSSADN---ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561
+ A+ DN +L+ A T AGKT A I LAL ++++ +P+KA
Sbjct: 44 REAIQCVDNNQSVLVSAHTSAGKTVCAEYAIA--LALREKQ---------RVIFTSPIKA 92
Query: 562 LVAEVVGNLSNRLQMYDVKVRELSGDQTL 590
L + + Q DV + ++GD T+
Sbjct: 93 LSNQKYREMYEEFQ--DVGL--MTGDVTI 117
>UNIPROTKB|P96901 [details] [associations]
symbol:lhr "PROBABLE ATP-DEPENDENT HELICASE LHR (LARGE
HELICASE-RELATED PROTEIN)" species:83332 "Mycobacterium
tuberculosis H37Rv" [GO:0005618 "cell wall" evidence=IDA]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
InterPro:IPR013701 Pfam:PF00270 Pfam:PF00271 Pfam:PF08494
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0005618 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
GO:GO:0003676 EMBL:BX842582 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000238716 KO:K03724
OMA:PRLVWDR EMBL:CP003248 PIR:A70982 RefSeq:NP_217813.1
RefSeq:NP_337924.1 RefSeq:YP_006516773.1
EnsemblBacteria:EBMYCT00000002553 EnsemblBacteria:EBMYCT00000072323
GeneID:13318119 GeneID:887503 GeneID:926649 KEGG:mtc:MT3395
KEGG:mtu:Rv3296 KEGG:mtv:RVBD_3296 PATRIC:18129218
TubercuList:Rv3296 ProtClustDB:CLSK792412 Uniprot:P96901
Length = 1513
Score = 200 (75.5 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 99/420 (23%), Positives = 179/420 (42%)
Query: 484 EWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDD 543
+W F T Q+ + +A++ DN L+ APTG+GKT A L L LA ++
Sbjct: 18 DWFTSTFAAPTA---AQASAW-AAIADGDNTLVIAPTGSGKTLAAFLWALDSLA--GSEP 71
Query: 544 GSFNHSNYKIVYVAPMKALVAEVVGNL----------SNR--LQMYDVKVRELSGDQ--T 589
S + +++YV+P+KAL +V NL + R L ++V SGD
Sbjct: 72 MSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIRVGVRSGDTPPA 131
Query: 590 LTRQQIEET-QIIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVA 648
L RQ + + +++TTPE ++ + +T T + RG L +
Sbjct: 132 LRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAATKRGAHLALSLE 191
Query: 649 RTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQ 708
R + + + + R +GLSAT+ E++A FL + + V LS Q + +
Sbjct: 192 R-LDDLSSRRRAQR-IGLSATVRPPEELARFLS-GQSPTTIVAPPAAKTVELSVQ-VPVP 247
Query: 709 VKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLK 768
L + D+ V + + ++F +SR+ + + + + G L
Sbjct: 248 DMANLTDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLNE--IHAARCGIELA 305
Query: 769 EDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTA 828
D+ + + ++ S P HH +++ R +VE+ G ++ +V+T+
Sbjct: 306 PDTNQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKAVVATS 365
Query: 829 TLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888
+L G+++ A ++I Q+ P A S L Q +GRAG Q G++ H
Sbjct: 366 SLELGIDMGAVDLVI---QVQAPPSVA----SGL---QRIGRAGH-QVGEISRGVLFPKH 414
Score = 43 (20.2 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 1089 GLSLTSDMVFITQSAGRLLRALFEIVLK 1116
GL +T+D++ S GRL+R F K
Sbjct: 1032 GLRVTADVLGRLASDGRLVRGEFVAAAK 1059
Score = 43 (20.2 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 15/73 (20%), Positives = 33/73 (45%)
Query: 859 LSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNA 918
L PL ++ RAG P+ + +G+ + + +S + + + + +L D + A
Sbjct: 932 LGPLTEDEIAARAGAPEVSGWLDGLRAAKRALV---VSFAGRSWWVAVEDMGRLRDGVGA 988
Query: 919 EIVLGTVQNAKEA 931
+ +G + EA
Sbjct: 989 AVPVGLPASFTEA 1001
>UNIPROTKB|F1SLL6 [details] [associations]
symbol:SKIV2L2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0000460 "maturation of 5.8S rRNA" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000178 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000460 GO:GO:0008026
GeneTree:ENSGT00690000102230 OMA:ENFQKAM InterPro:IPR025696
Pfam:PF13234 EMBL:FP236391 EMBL:CU929534 Ensembl:ENSSSCT00000018417
Uniprot:F1SLL6
Length = 1046
Score = 164 (62.8 bits), Expect = 1.5e-09, Sum P(3) = 1.5e-09
Identities = 50/168 (29%), Positives = 83/168 (49%)
Query: 726 KVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVK 785
K++ V+IF S+K+ A A++ T L+ +T +E + E+ + D +
Sbjct: 380 KMIMERNFQPVIIFSFSKKDCE--AYALQMTKLDFNTD----EEKKMVEEVFSNAIDCLS 433
Query: 786 SNDLK--------DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLP 837
D K LL G IHH G+ ++ +E LF +G ++ L +T T A G+N+P
Sbjct: 434 DEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMP 493
Query: 838 AHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885
A TV+ + ++ + W +S + +QM GRAGR D GI+I
Sbjct: 494 ARTVLFTNARKFDGKDFRW--ISSGEYIQMSGRAGRRGMDD--RGIVI 537
Score = 69 (29.3 bits), Expect = 1.5e-09, Sum P(3) = 1.5e-09
Identities = 38/157 (24%), Positives = 67/157 (42%)
Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDII 611
++++ +P+KAL + + Q DV + ++GD T+ + +++TT ++
Sbjct: 185 RVIFTSPIKALSNQKYREMYEEFQ--DVGL--MTGDVTINPTA---SCLVMTTEILRSML 237
Query: 612 TRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671
R G ++ RG V E + +++ V LSAT+P
Sbjct: 238 YR--GSEVMREVAWVIFDEIHYMRDSERGVVWEETII-------LLPDNVHYVFLSATIP 288
Query: 672 NYEDVALFLRVNLEKG---LFYFDNSYRPVPLSQQYI 705
N A ++ +L K + Y D YRP PL Q YI
Sbjct: 289 NARQFAEWI-CHLHKQPCHVIYTD--YRPTPL-QHYI 321
Score = 54 (24.1 bits), Expect = 4.9e-08, Sum P(3) = 4.9e-08
Identities = 25/89 (28%), Positives = 41/89 (46%)
Query: 505 KSALSSADN---ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561
+ A+ DN +L+ A T AGKT A I LAL ++++ +P+KA
Sbjct: 146 REAIQCVDNNQSVLVSAHTSAGKTVCAEYAIA--LALREKQ---------RVIFTSPIKA 194
Query: 562 LVAEVVGNLSNRLQMYDVKVRELSGDQTL 590
L + + Q DV + ++GD T+
Sbjct: 195 LSNQKYREMYEEFQ--DVGL--MTGDVTI 219
Score = 48 (22.0 bits), Expect = 1.5e-09, Sum P(3) = 1.5e-09
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 131 DEILAVLKNDAVKNPDKKKEIEK 153
DE+ +V ++D+ P KK+ EK
Sbjct: 7 DELFSVFEDDSTTAPGTKKDKEK 29
>UNIPROTKB|G4NH56 [details] [associations]
symbol:MGG_03931 "FRQ-interacting RNA helicase"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0031499 GO:GO:0043629
GO:GO:0071035 GO:GO:0071038 EMBL:CM001236 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000467 GO:GO:0071042
GO:GO:0071051 GO:GO:0008143 GO:GO:0034459 GO:GO:0034475
GO:GO:0034476 KO:K12598 InterPro:IPR025696 Pfam:PF13234
GO:GO:0071049 RefSeq:XP_003719933.1 EnsemblFungi:MGG_03931T0
GeneID:2677161 KEGG:mgr:MGG_03931 Uniprot:G4NH56
Length = 1102
Score = 161 (61.7 bits), Expect = 1.9e-09, Sum P(3) = 1.9e-09
Identities = 47/163 (28%), Positives = 82/163 (50%)
Query: 726 KVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQ-SHTD-- 782
K++ H V++F S++E A + +++ + L ED I+ S D
Sbjct: 426 KMIMRRAYHPVIVFNFSKRECENLALKVSTLNFNHESEQK-LVEDIFRNAIMSLSEEDQG 484
Query: 783 MVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVI 842
+ + L LL G +HH+G+ ++ +E LF + ++VL +T T + G+N+PA TV+
Sbjct: 485 LPQIQHLLPLLKKGIGVHHSGLLPILKETIEILFQENLIKVLFATETFSIGLNMPAKTVV 544
Query: 843 IKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885
+ ++ K L+P + +QM GRAGR D GI+I
Sbjct: 545 FSQVKKFDGVKER--PLTPSEYIQMSGRAGRRGLDD--RGIVI 583
Score = 81 (33.6 bits), Expect = 1.9e-09, Sum P(3) = 1.9e-09
Identities = 39/151 (25%), Positives = 72/151 (47%)
Query: 469 PLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVA 528
P D + + +SE +PA K +L+ QS + +++ +++L+ A T AGKT VA
Sbjct: 150 PPDLDYVYVPLSEHKPPEEPARKYAFKLDPFQS-ISVASIERDESVLVSAHTSAGKTVVA 208
Query: 529 VLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQ 588
I L RN +++Y +P+KAL + + + + DV + ++GD
Sbjct: 209 EYAIAH--CLKRNQ---------RVIYTSPIKALSNQKFRDF--QAEFGDVGL--MTGDV 253
Query: 589 TLTRQQ---IEETQIIVTTPEKWDIITRKSG 616
T+ + T+I+ + + ITR+ G
Sbjct: 254 TINPTASCLVMTTEILRSMLYRGSEITREVG 284
Score = 73 (30.8 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 47/216 (21%), Positives = 92/216 (42%)
Query: 550 NYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPE 606
N +++Y +P+KAL + + + + DV + ++GD T+ + T+I+ +
Sbjct: 219 NQRVIYTSPIKALSNQKFRDF--QAEFGDVGL--MTGDVTINPTASCLVMTTEILRSMLY 274
Query: 607 KWDIITRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGL 666
+ ITR+ G + ++ RG V E T+ + + +R V L
Sbjct: 275 RGSEITREVGWVVFDEI--------HYMRDATRGVVWEE----TIIMLP---DKVRYVFL 319
Query: 667 SATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYI------GIQVKKPLQRFQLMN 720
SAT+PN A ++ + +RP PL Q Y+ GI + ++
Sbjct: 320 SATIPNAFQFAEWIAKIHRQACHVVYTDFRPTPL-QNYVFPAGGDGIYIMVD-EKGVFRE 377
Query: 721 DLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDT 756
E + ++AGK+ + +K K +A+++T
Sbjct: 378 KKFMEAIGSIAGKNDDDDSMPRQKGKGKNKKAVKNT 413
Score = 45 (20.9 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 138 KND-AVKN--PDKKKEIEKLLNPIPNHVFDQLV 167
KN AVKN PD K +I K++ I + ++
Sbjct: 405 KNKKAVKNTVPDSKADITKIIKMIMRRAYHPVI 437
Score = 39 (18.8 bits), Expect = 1.9e-09, Sum P(3) = 1.9e-09
Identities = 17/71 (23%), Positives = 32/71 (45%)
Query: 84 PDADAAAASEGTYQPKTKETRAAY--EAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDA 141
P+A A + KTK+T+ + ++ +++ G N+ GA D N A
Sbjct: 12 PEAPAVGLDRNSSDTKTKKTKKSKRDKSKDKSKKRKADGHVKNL--GAQD-------NGA 62
Query: 142 VKNPDKKKEIE 152
PD ++++E
Sbjct: 63 EAQPDPQEDVE 73
>MGI|MGI:1919448 [details] [associations]
symbol:Skiv2l2 "superkiller viralicidic activity 2-like 2
(S. cerevisiae)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000460 "maturation of 5.8S
rRNA" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919448 GO:GO:0005524
GO:GO:0005730 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
GO:GO:0000178 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000460 GO:GO:0008026 eggNOG:COG4581
GeneTree:ENSGT00690000102230 HOGENOM:HOG000163047 KO:K12598
OMA:ENFQKAM InterPro:IPR025696 Pfam:PF13234 CTD:23517
HOVERGEN:HBG104255 OrthoDB:EOG4D52WW ChiTaRS:SKIV2L2 EMBL:AK012158
EMBL:BC029230 IPI:IPI00113134 RefSeq:NP_082427.1 UniGene:Mm.291029
ProteinModelPortal:Q9CZU3 SMR:Q9CZU3 IntAct:Q9CZU3 STRING:Q9CZU3
PhosphoSite:Q9CZU3 PaxDb:Q9CZU3 PRIDE:Q9CZU3
Ensembl:ENSMUST00000022281 GeneID:72198 KEGG:mmu:72198
UCSC:uc007rws.1 InParanoid:Q9CZU3 NextBio:335677 Bgee:Q9CZU3
Genevestigator:Q9CZU3 GermOnline:ENSMUSG00000016018 Uniprot:Q9CZU3
Length = 1040
Score = 168 (64.2 bits), Expect = 2.9e-09, Sum P(3) = 2.9e-09
Identities = 51/168 (30%), Positives = 83/168 (49%)
Query: 726 KVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVK 785
K++ V+IF S+K+ A A++ T L+ +T +E + E+ + D +
Sbjct: 377 KMIMERNFQPVIIFSFSKKDCE--AYALQMTKLDFNTD----EEKKMVEEVFNNAIDCLS 430
Query: 786 SNDLK--------DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLP 837
D K LL G IHH G+ ++ +E LF +G ++ L +T T A G+N+P
Sbjct: 431 DEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMP 490
Query: 838 AHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885
A TV+ + Y+ + W +S + +QM GRAGR D GI+I
Sbjct: 491 ARTVLFTNARKYDGKDFRW--ISSGEYIQMSGRAGRRGMDD--RGIVI 534
Score = 69 (29.3 bits), Expect = 2.9e-09, Sum P(3) = 2.9e-09
Identities = 38/157 (24%), Positives = 67/157 (42%)
Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDII 611
++++ +P+KAL + + Q DV + ++GD T+ + +++TT ++
Sbjct: 182 RVIFTSPIKALSNQKYREMYEEFQ--DVGL--MTGDVTINPTA---SCLVMTTEILRSML 234
Query: 612 TRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671
R G ++ RG V E + +++ V LSAT+P
Sbjct: 235 YR--GSEVMREVAWVIFDEIHYMRDSERGVVWEETII-------LLPDNVHYVFLSATIP 285
Query: 672 NYEDVALFLRVNLEKG---LFYFDNSYRPVPLSQQYI 705
N A ++ +L K + Y D YRP PL Q YI
Sbjct: 286 NARQFAEWI-CHLHKQPCHVIYTD--YRPTPL-QHYI 318
Score = 54 (24.1 bits), Expect = 9.3e-08, Sum P(3) = 9.3e-08
Identities = 25/89 (28%), Positives = 41/89 (46%)
Query: 505 KSALSSADN---ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561
+ A+ DN +L+ A T AGKT A I LAL ++++ +P+KA
Sbjct: 143 REAIQCVDNNQSVLVSAHTSAGKTVCAEYAIA--LALREKQ---------RVIFTSPIKA 191
Query: 562 LVAEVVGNLSNRLQMYDVKVRELSGDQTL 590
L + + Q DV + ++GD T+
Sbjct: 192 LSNQKYREMYEEFQ--DVGL--MTGDVTI 216
Score = 41 (19.5 bits), Expect = 2.9e-09, Sum P(3) = 2.9e-09
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 131 DEILAVLKNDAVKNPDKKKEIEK 153
DE+ +V ++D+ KK+ EK
Sbjct: 7 DELFSVFEDDSTSAAGAKKDKEK 29
>UNIPROTKB|F1MAH7 [details] [associations]
symbol:F1MAH7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000178 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000460 GO:GO:0008026 InterPro:IPR025696
Pfam:PF13234 IPI:IPI00372914 PRIDE:F1MAH7
Ensembl:ENSRNOT00000013683 ArrayExpress:F1MAH7 Uniprot:F1MAH7
Length = 1046
Score = 168 (64.2 bits), Expect = 3.7e-09, Sum P(3) = 3.7e-09
Identities = 51/168 (30%), Positives = 83/168 (49%)
Query: 726 KVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVK 785
K++ V+IF S+K+ A A++ T L+ +T +E + E+ + D +
Sbjct: 379 KMIMERNFQPVIIFSFSKKDCE--AYALQMTKLDFNTD----EEKKMVEEVFNNAIDCLS 432
Query: 786 SNDLK--------DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLP 837
D K LL G IHH G+ ++ +E LF +G ++ L +T T A G+N+P
Sbjct: 433 DEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMP 492
Query: 838 AHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885
A TV+ + Y+ + W +S + +QM GRAGR D GI+I
Sbjct: 493 ARTVLFTNARKYDGKDFRW--ISSGEYIQMSGRAGRRGMDD--RGIVI 536
Score = 69 (29.3 bits), Expect = 3.7e-09, Sum P(3) = 3.7e-09
Identities = 38/157 (24%), Positives = 67/157 (42%)
Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDII 611
++++ +P+KAL + + Q DV + ++GD T+ + +++TT ++
Sbjct: 184 RVIFTSPIKALSNQKYREMYEEFQ--DVGL--MTGDVTINPTA---SCLVMTTEILRSML 236
Query: 612 TRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671
R G ++ RG V E + +++ V LSAT+P
Sbjct: 237 YR--GSEVMREVAWVIFDEIHYMRDSERGVVWEETII-------LLPDNVHYVFLSATIP 287
Query: 672 NYEDVALFLRVNLEKG---LFYFDNSYRPVPLSQQYI 705
N A ++ +L K + Y D YRP PL Q YI
Sbjct: 288 NARQFAEWI-CHLHKQPCHVIYTD--YRPTPL-QHYI 320
Score = 50 (22.7 bits), Expect = 3.0e-07, Sum P(3) = 3.0e-07
Identities = 23/83 (27%), Positives = 39/83 (46%)
Query: 508 LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567
L+ ++L+ A T AGKT A I LAL ++++ +P+KAL +
Sbjct: 151 LTINQSVLVSAHTSAGKTVCAEYAIA--LALREKQ---------RVIFTSPIKALSNQKY 199
Query: 568 GNLSNRLQMYDVKVRELSGDQTL 590
+ Q DV + ++GD T+
Sbjct: 200 REMYEEFQ--DVGL--MTGDVTI 218
Score = 40 (19.1 bits), Expect = 3.7e-09, Sum P(3) = 3.7e-09
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 131 DEILAVLKNDAVKNPDKKKEIEK 153
DE+ +V ++D+ KK+ EK
Sbjct: 7 DELFSVFEDDSTTAAGTKKDKEK 29
>UNIPROTKB|D4AE49 [details] [associations]
symbol:D4AE49 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR012961 Pfam:PF00271 Pfam:PF08148 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0004386
GeneTree:ENSGT00690000102230 InterPro:IPR025696 Pfam:PF13234
IPI:IPI00776783 PRIDE:D4AE49 Ensembl:ENSRNOT00000060695
ArrayExpress:D4AE49 Uniprot:D4AE49
Length = 764
Score = 168 (64.2 bits), Expect = 7.1e-09, Sum P(3) = 7.1e-09
Identities = 51/168 (30%), Positives = 83/168 (49%)
Query: 726 KVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVK 785
K++ V+IF S+K+ A A++ T L+ +T +E + E+ + D +
Sbjct: 123 KMIMERNFQPVIIFSFSKKDCE--AYALQMTKLDFNTD----EEKKMVEEVFNNAIDCLS 176
Query: 786 SNDLK--------DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLP 837
D K LL G IHH G+ ++ +E LF +G ++ L +T T A G+N+P
Sbjct: 177 DEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMP 236
Query: 838 AHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885
A TV+ + Y+ + W +S + +QM GRAGR D GI+I
Sbjct: 237 ARTVLFTNARKYDGKDFRW--ISSGEYIQMSGRAGRRGMDD--RGIVI 280
Score = 62 (26.9 bits), Expect = 7.1e-09, Sum P(3) = 7.1e-09
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 659 EHIRLVGLSATLPNYEDVALFLRVNLEKG---LFYFDNSYRPVPLSQQYI 705
+++ V LSAT+PN A ++ +L K + Y D YRP PL Q YI
Sbjct: 19 DNVHYVFLSATIPNARQFAEWI-CHLHKQPCHVIYTD--YRPTPL-QHYI 64
Score = 39 (18.8 bits), Expect = 7.1e-09, Sum P(3) = 7.1e-09
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 890 ELRYYLSLMNQQLPIESQ 907
EL +YL+L L +SQ
Sbjct: 366 ELSFYLTLSQSSLKADSQ 383
>ZFIN|ZDB-GENE-040426-2854 [details] [associations]
symbol:skiv2l2 "superkiller viralicidic activity
2-like 2" species:7955 "Danio rerio" [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0031101 "fin regeneration"
evidence=IMP] [GO:0051781 "positive regulation of cell division"
evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-040426-2854 GO:GO:0005524 GO:GO:0051781 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031101
GO:GO:0008026 eggNOG:COG4581 HOGENOM:HOG000163047 KO:K12598
InterPro:IPR025696 Pfam:PF13234 CTD:23517 HOVERGEN:HBG104255
OrthoDB:EOG4D52WW EMBL:BC061456 IPI:IPI00481753 RefSeq:NP_999933.1
UniGene:Dr.75715 ProteinModelPortal:Q6P7X6 STRING:Q6P7X6
PRIDE:Q6P7X6 GeneID:406795 KEGG:dre:406795 NextBio:20818305
Bgee:Q6P7X6 Uniprot:Q6P7X6
Length = 1034
Score = 167 (63.8 bits), Expect = 7.2e-09, Sum P(3) = 7.2e-09
Identities = 51/168 (30%), Positives = 84/168 (50%)
Query: 726 KVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVK 785
K++ V+IF S+KE A A++ + L+ +T +E + E+ + TD +
Sbjct: 372 KMIMERNFQPVIIFSFSKKECE--AYALQVSKLDFNTD----EEKKLVEEVFNNATDCLS 425
Query: 786 SNDLK--------DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLP 837
D K LL G IHH G+ ++ +E LF +G ++ L +T T A G+N+P
Sbjct: 426 DEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETFAMGINMP 485
Query: 838 AHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885
A TV+ + ++ + W +S + +QM GRAGR D GI+I
Sbjct: 486 ARTVLFTSARKFDGKDFRW--ISSGEYIQMSGRAGRRGMDE--RGIVI 529
Score = 66 (28.3 bits), Expect = 7.2e-09, Sum P(3) = 7.2e-09
Identities = 40/157 (25%), Positives = 67/157 (42%)
Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDII 611
++++ +P+KAL + + Q DV + ++GD T+ + +++TT ++
Sbjct: 172 RVIFTSPIKALSNQKYREMYEEFQ--DVGL--MTGDVTINPTA---SCLVMTTEILRSML 224
Query: 612 TRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671
R G ++ RG V E T+ + H V LSAT+P
Sbjct: 225 YR--GSEVMREVAWVIFDEIHYMRDSERGVVWEE----TIILLPDNVHH---VFLSATVP 275
Query: 672 NYEDVALFLRVNLEKG---LFYFDNSYRPVPLSQQYI 705
N A ++ +L K + Y D YRP PL Q YI
Sbjct: 276 NARQFAEWI-CHLHKQPCHVVYTD--YRPTPL-QHYI 308
Score = 51 (23.0 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 25/89 (28%), Positives = 41/89 (46%)
Query: 505 KSALSSADN---ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561
+ A+ DN +L+ A T AGKT A I LAL ++++ +P+KA
Sbjct: 133 REAILCIDNNQSVLVSAHTSAGKTVCAEYAIA--LALREKQ---------RVIFTSPIKA 181
Query: 562 LVAEVVGNLSNRLQMYDVKVRELSGDQTL 590
L + + Q DV + ++GD T+
Sbjct: 182 LSNQKYREMYEEFQ--DVGL--MTGDVTI 206
Score = 41 (19.5 bits), Expect = 7.2e-09, Sum P(3) = 7.2e-09
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 1184 KMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLW 1225
K+G+ + +F+H+ P+ L +QP +K E DF W
Sbjct: 628 KLGKEIEEFIHK-PRYCLP-FLQPGRLVKVKKE---DLDFGW 664
>FB|FBgn0002905 [details] [associations]
symbol:mus308 "mutagen-sensitive 308" species:7227
"Drosophila melanogaster" [GO:0004386 "helicase activity"
evidence=ISS] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS;NAS] [GO:0006281 "DNA repair" evidence=NAS;TAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IMP] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IMP] InterPro:IPR001098 InterPro:IPR001650
InterPro:IPR002298 InterPro:IPR003583 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00476 PRINTS:PR00868
PROSITE:PS51194 SMART:SM00278 SMART:SM00482 SMART:SM00490
EMBL:AE014297 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0006200 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG1204 GeneTree:ENSGT00640000091272
GO:GO:0006303 GO:GO:0006289 GO:GO:0008026 GO:GO:0003887 KO:K02349
OMA:EASIPEI EMBL:L76559 EMBL:BT044169 PIR:T13858 RefSeq:NP_524333.1
UniGene:Dm.23677 HSSP:P00582 SMR:O18475 STRING:O18475
EnsemblMetazoa:FBtr0082662 GeneID:41571 KEGG:dme:Dmel_CG6019
UCSC:CG6019-RA CTD:41571 FlyBase:FBgn0002905 InParanoid:O18475
OrthoDB:EOG4FJ6QM GenomeRNAi:41571 NextBio:824448 Uniprot:O18475
Length = 2059
Score = 202 (76.2 bits), Expect = 7.5e-09, Sum P(3) = 7.5e-09
Identities = 87/296 (29%), Positives = 141/296 (47%)
Query: 654 IETTKEHIRLVG--LSATL--PNYEDVALFLRVNLEKGLFYFDNSYRPV-PLSQQYIGIQ 708
+ T E+++L+ L A L NY VAL + ++ G +D+ + V +++Q + ++
Sbjct: 394 MSATLENVQLLQSWLDAELYITNYRPVAL--KEMIKVGTVIYDHRLKLVRDVAKQKVLLK 451
Query: 709 -VKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRK--ET--AKTARAIRDTALENDTL 763
++ L LC E ++ V++F S+ E + A AI L
Sbjct: 452 GLENDSDDVAL---LCIETLLEGCS---VIVFCPSKDWCENLAVQLATAIHVQIKSETVL 505
Query: 764 GRFLKEDSVSR---EILQSHTDMVKSND--LKDLLPYGFAIHHAGMTRGDRQLVEDLFGD 818
G+ L+ + R E+ Q D+ D + + Y A HHAG+T +R ++E F
Sbjct: 506 GQRLRTNLNPRAIAEVKQQLRDIPTGLDGVMSKAITYACAFHHAGLTTEERDIIEASFKA 565
Query: 819 GHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDS 878
G ++VLV+T+TL+ GVNLPA V+I+ +P G ++S L QM+GRAGR D+
Sbjct: 566 GALKVLVATSTLSSGVNLPARRVLIR-----SPLFGG-KQMSSLTYRQMIGRAGRMGKDT 619
Query: 879 YGEGIIITGHSELRYYLSLMNQQL-PIESQFVSKLADQLNA---EIVLGTVQNAKE 930
GE I+I R L+ +L PI S + L E++ V N KE
Sbjct: 620 LGESILICNEINARMGRDLVVSELQPITSCLDMDGSTHLKRALLEVISSGVANTKE 675
Score = 44 (20.5 bits), Expect = 7.5e-09, Sum P(3) = 7.5e-09
Identities = 22/78 (28%), Positives = 36/78 (46%)
Query: 950 LYGLAPEVLKEDITLGERRADLV----HTAAT-ILD-RNNLVKYDRKSGYFQVTDLGRIA 1003
+YG+ L E + E+ A ++ H A I D +V + R G+ + T GR
Sbjct: 1885 VYGMGMRSLAESLNCSEQEARMISDQFHQAYKGIRDYTTRVVNFARSKGFVE-TITGRRR 1943
Query: 1004 SYYYISHGTISTYNEHLK 1021
Y+ + I++ EHLK
Sbjct: 1944 ---YLEN--INSDVEHLK 1956
Score = 37 (18.1 bits), Expect = 7.5e-09, Sum P(3) = 7.5e-09
Identities = 6/18 (33%), Positives = 14/18 (77%)
Query: 338 LARAQDQEERKKIEEEMM 355
L AQD+E ++++E+++
Sbjct: 135 LCPAQDEEASEQLKEDIL 152
>DICTYBASE|DDB_G0277211 [details] [associations]
symbol:DDB_G0277211 "superkiller viralicidic activity
2-like protein" species:44689 "Dictyostelium discoideum"
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0277211 GO:GO:0005524
GO:GO:0003676 EMBL:AAFI02000019 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG4581 InterPro:IPR025696
Pfam:PF13234 KO:K12599 OMA:TRLDETC RefSeq:XP_642686.1
ProteinModelPortal:Q86K90 EnsemblProtists:DDB0233454 GeneID:8620875
KEGG:ddi:DDB_G0277211 InParanoid:Q86K90 Uniprot:Q86K90
Length = 1378
Score = 172 (65.6 bits), Expect = 7.6e-09, Sum P(3) = 7.6e-09
Identities = 55/161 (34%), Positives = 82/161 (50%)
Query: 762 TLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHV 821
+LGR ++D +ILQ +K+LL G +HH G+ ++LVE LF V
Sbjct: 731 SLGRLCEDDKSLPQILQ----------MKELLERGIGVHHGGLLPIVKELVEILFSKSLV 780
Query: 822 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGE 881
+VL +T T A GVN+PA TV+ T+ ++ + +L P + QM GRAGR D G
Sbjct: 781 KVLFATETFAMGVNMPAKTVVYSSTRKHDGI--TFRDLIPGEYTQMSGRAGRRGLDKVGT 838
Query: 882 GIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVL 922
+IIT Y + +Q IES + +LN++ L
Sbjct: 839 -VIIT-------YWKDIPEQATIESMILGT-PSRLNSQFRL 870
Score = 59 (25.8 bits), Expect = 7.6e-09, Sum P(3) = 7.6e-09
Identities = 32/154 (20%), Positives = 64/154 (41%)
Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDII 611
+ +Y +P+KAL + + N DV + ++GD +++ + +V T E +
Sbjct: 478 RAIYTSPIKALSNQKFRDFKNTFN--DVGL--ITGDVSIS----PSSSCLVLTTEILRSM 529
Query: 612 TRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671
K D + RG V E ++ ++++V LSAT+
Sbjct: 530 LYKGAD-LIRDIEWVIFDEVHYLNDLERGVVWEEVIIML-------PPYVKMVFLSATVS 581
Query: 672 NYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYI 705
N + A ++ + ++ + RP+PL + YI
Sbjct: 582 NPLEFAQWIGRTKQLPIYVIGTTKRPIPL-EHYI 614
Score = 47 (21.6 bits), Expect = 7.6e-09, Sum P(3) = 7.6e-09
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 359 PDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDES 397
P +++ ++ T K++ K +E I EE +R ++ES
Sbjct: 364 PTSSSLSTSSSSSSTTLKDKNK-IEIEIEEETKRKEEES 401
Score = 47 (21.6 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 24/104 (23%), Positives = 45/104 (43%)
Query: 488 PAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFN 547
PA + L+ Q + + +++ + A T AGKT +A I A N
Sbjct: 426 PAIEYPFDLDSFQKQAIVH-MEQGESVFITAHTSAGKTVIAEYAIAMA-AKNMT------ 477
Query: 548 HSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLT 591
+ +Y +P+KAL + + N DV + ++GD +++
Sbjct: 478 ----RAIYTSPIKALSNQKFRDFKNTFN--DVGL--ITGDVSIS 513
Score = 42 (19.8 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 380 KNLEKSIREEARRLKDESA 398
K+LE+ I EE +R + E A
Sbjct: 304 KDLEREIEEERKREEAEEA 322
>TAIR|locus:2075566 [details] [associations]
symbol:AT3G46960 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0005773
"vacuole" evidence=IDA] [GO:0006813 "potassium ion transport"
evidence=IMP] [GO:0035864 "response to potassium ion" evidence=IMP]
[GO:0007062 "sister chromatid cohesion" evidence=RCA] [GO:0031048
"chromatin silencing by small RNA" evidence=RCA] [GO:0045132
"meiotic chromosome segregation" evidence=RCA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005773
EMBL:CP002686 GO:GO:0003676 GO:GO:0006813 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696
Pfam:PF13234 KO:K12599 OMA:TRLDETC IPI:IPI00544785
RefSeq:NP_190280.5 UniGene:At.28750 UniGene:At.48743
ProteinModelPortal:F4JAA5 SMR:F4JAA5 PRIDE:F4JAA5
EnsemblPlants:AT3G46960.1 GeneID:823849 KEGG:ath:AT3G46960
GO:GO:0035864 Uniprot:F4JAA5
Length = 1347
Score = 172 (65.6 bits), Expect = 8.8e-09, Sum P(3) = 8.8e-09
Identities = 53/180 (29%), Positives = 90/180 (50%)
Query: 736 VLIFVHSRKETAKTARAIRDTALENDTLGRFLKE--DSVSREILQSHTDMVKSNDLKDLL 793
V++F S+ + A A+ T L + + ++ D + S ++ + L+ LL
Sbjct: 652 VVVFCFSKNYCDRCADALTGTDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQVLRLQSLL 711
Query: 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEK 853
G +HHAG+ +++VE LF G ++VL ST T A GVN PA TV+ + ++ ++
Sbjct: 712 HRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDALRKFDGKE 771
Query: 854 GAWTELSPLDIMQMLGRAGRPQYDSYGEGII-----ITGHSELRYYLSLMNQQLPIESQF 908
+ +L P + QM GRAGR D G ++ + S+LR + + +ESQF
Sbjct: 772 --FRQLLPGEYTQMAGRAGRRGLDKTGTVVVMCRDEVPDESDLRRVI--VGSATRLESQF 827
Score = 62 (26.9 bits), Expect = 8.8e-09, Sum P(3) = 8.8e-09
Identities = 21/62 (33%), Positives = 30/62 (48%)
Query: 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPV 698
RG V E ++ R HI V LSAT+PN + A ++ +K + + RPV
Sbjct: 482 RGVVWEEVIIMLPR-------HINFVLLSATVPNTFEFADWIGRTKQKEIRVTGTTKRPV 534
Query: 699 PL 700
PL
Sbjct: 535 PL 536
Score = 43 (20.2 bits), Expect = 8.8e-09, Sum P(3) = 8.8e-09
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 508 LSSADNILLCAPTGAGKTNVA 528
L +++ + A T AGKT VA
Sbjct: 372 LEKGESVFVAAHTSAGKTVVA 392
>GENEDB_PFALCIPARUM|PFF0100w [details] [associations]
symbol:PFF0100w "putative ATP dependent RNA
helicase" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AL844505 HOGENOM:HOG000163047 KO:K12598
InterPro:IPR025696 Pfam:PF13234 RefSeq:XP_966011.1
ProteinModelPortal:C6KSM1 EnsemblProtists:PFF0100w:mRNA
GeneID:3885738 KEGG:pfa:PFF0100w EuPathDB:PlasmoDB:PF3D7_0602100
OMA:RGIVIIM ProtClustDB:CLSZ2433467 Uniprot:C6KSM1
Length = 1350
Score = 169 (64.5 bits), Expect = 9.3e-09, Sum P(5) = 9.3e-09
Identities = 58/190 (30%), Positives = 92/190 (48%)
Query: 702 QQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQ---VLIFVHSRKETAKTARAIRDTAL 758
QQ+I KK R + D+ EK+V + ++IF S+KE A A+ L
Sbjct: 478 QQHINKYTKK--MR-KTTYDI--EKIVQMCHSRNYTPLIIFAFSKKECEVNATAMHKIDL 532
Query: 759 ENDTLGRFLKE--DSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLF 816
+DT +KE ++ R + + + + LL G IHH G+ ++++E +F
Sbjct: 533 TSDTEKEVIKELYENAIRILADDDRSLPQVQFILPLLLRGIGIHHGGLLPIIKEIIEIMF 592
Query: 817 GDGHVQVLVSTATLAWGVNLPAHTVIIKG-TQIYNPEKGAWTELSPLDIMQMLGRAGRPQ 875
+ ++VL ST T + G+N+PA TV+ T+ EK T + +QM GRAGR
Sbjct: 593 QESLLKVLFSTETFSMGINMPAKTVVFTSLTKFDGLEKRLITSG---EYIQMAGRAGRRG 649
Query: 876 YDSYGEGIII 885
D G II+
Sbjct: 650 LDDRGIVIIM 659
Score = 69 (29.3 bits), Expect = 9.3e-09, Sum P(5) = 9.3e-09
Identities = 39/155 (25%), Positives = 69/155 (44%)
Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDII 611
+++Y +P+KAL + +L + DV + ++GD ++ E + I++TT ++
Sbjct: 299 RVIYTSPIKALSNQKYRDLGEEFK--DVGL--ITGDISINP---EASIIVMTTEILRSML 351
Query: 612 TRKSGDRTYTQLVK-XXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670
R S + T+ VK +RG + E T+ + +R + LSAT+
Sbjct: 352 YRGS---SLTKEVKWVIFDEIHYMRDRDRGVIWEE----TIILLPLM---VRFIFLSATI 401
Query: 671 PNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYI 705
PN A ++ + YRP PL Q YI
Sbjct: 402 PNGIQFAEWVSSIKSQACHIVYTDYRPTPL-QHYI 435
Score = 62 (26.9 bits), Expect = 1.6e-07, Sum P(5) = 1.6e-07
Identities = 32/121 (26%), Positives = 56/121 (46%)
Query: 467 HKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTN 526
HK + P + +E+ E PA +L+ Q + + L +++L+ A T AGKT
Sbjct: 228 HKCVRPQSYVH--NEIKEPLIPARTYKFELDTFQKKSIE-CLERNESVLVSAHTSAGKTV 284
Query: 527 VAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSG 586
+A I AL D +++Y +P+KAL + +L + DV + ++G
Sbjct: 285 IAEYAI----ALGLRD-------KQRVIYTSPIKALSNQKYRDLGEEFK--DVGL--ITG 329
Query: 587 D 587
D
Sbjct: 330 D 330
Score = 49 (22.3 bits), Expect = 9.3e-09, Sum P(5) = 9.3e-09
Identities = 14/73 (19%), Positives = 38/73 (52%)
Query: 325 LLRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAI-LDQLHATRATAKERQKNLE 383
+++N +++ T ++ +D+EE+++ E+ + ++ I D ++ +++NL
Sbjct: 36 IIQNDNEIITSTNNSKNEDEEEKEETEKNINKQNNNINNIDKDDVNKDNV-GNHKKENLY 94
Query: 384 KSIREEARRLKDE 396
K I E ++ E
Sbjct: 95 KDINIENYKINVE 107
Score = 46 (21.3 bits), Expect = 3.5e-08, Sum P(6) = 3.5e-08
Identities = 11/53 (20%), Positives = 28/53 (52%)
Query: 110 MLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHV 162
++S+ ++ + N + +EI+ N ++ ++K+E EK +N N++
Sbjct: 20 IISIKDEEQQQEKKNHIIQNDNEIITSTNNSKNEDEEEKEETEKNINKQNNNI 72
Score = 40 (19.1 bits), Expect = 9.3e-09, Sum P(5) = 9.3e-09
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 524 KTNVAVLTILQQLALNRNDDGSFNHSNYK 552
KTN V I ++L+L N++ + NH N K
Sbjct: 136 KTNKNVNKI-RKLSLQENNNINNNHINGK 163
Score = 37 (18.1 bits), Expect = 9.3e-09, Sum P(5) = 9.3e-09
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 1026 DIELCRLFSLSEEFKYVTV 1044
+IE CR L +E K + V
Sbjct: 1101 NIEKCRFIVLKKELKNMLV 1119
Score = 37 (18.1 bits), Expect = 3.5e-08, Sum P(6) = 3.5e-08
Identities = 6/14 (42%), Positives = 12/14 (85%)
Query: 376 KERQKNLEKSIREE 389
K+ ++N++K I+EE
Sbjct: 113 KKAEENIKKQIQEE 126
>UNIPROTKB|E2RCI5 [details] [associations]
symbol:SKIV2L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00690000102230 KO:K12598 OMA:ENFQKAM
InterPro:IPR025696 Pfam:PF13234 CTD:23517 EMBL:AAEX03001437
RefSeq:XP_849676.1 Ensembl:ENSCAFT00000010985 GeneID:607950
KEGG:cfa:607950 Uniprot:E2RCI5
Length = 1042
Score = 164 (62.8 bits), Expect = 9.6e-09, Sum P(3) = 9.6e-09
Identities = 50/168 (29%), Positives = 83/168 (49%)
Query: 726 KVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVK 785
K++ V+IF S+K+ A A++ T L+ +T +E + E+ + D +
Sbjct: 379 KMIMERNFQPVIIFSFSKKDCE--AYALQMTKLDFNTD----EEKKMVEEVFSNAIDCLS 432
Query: 786 SNDLK--------DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLP 837
D K LL G IHH G+ ++ +E LF +G ++ L +T T A G+N+P
Sbjct: 433 DEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMP 492
Query: 838 AHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885
A TV+ + ++ + W +S + +QM GRAGR D GI+I
Sbjct: 493 ARTVLFTNARKFDGKDFRW--ISSGEYIQMSGRAGRRGMDD--RGIVI 536
Score = 69 (29.3 bits), Expect = 9.6e-09, Sum P(3) = 9.6e-09
Identities = 38/157 (24%), Positives = 67/157 (42%)
Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDII 611
++++ +P+KAL + + Q DV + ++GD T+ + +++TT ++
Sbjct: 184 RVIFTSPIKALSNQKYREMYEEFQ--DVGL--MTGDVTINPTA---SCLVMTTEILRSML 236
Query: 612 TRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671
R G ++ RG V E + +++ V LSAT+P
Sbjct: 237 YR--GSEVMREVAWVIFDEIHYMRDSERGVVWEETII-------LLPDNVHYVFLSATIP 287
Query: 672 NYEDVALFLRVNLEKG---LFYFDNSYRPVPLSQQYI 705
N A ++ +L K + Y D YRP PL Q YI
Sbjct: 288 NARQFAEWI-CHLHKQPCHVIYTD--YRPTPL-QHYI 320
Score = 54 (24.1 bits), Expect = 3.0e-07, Sum P(3) = 3.0e-07
Identities = 25/89 (28%), Positives = 41/89 (46%)
Query: 505 KSALSSADN---ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561
+ A+ DN +L+ A T AGKT A I LAL ++++ +P+KA
Sbjct: 145 REAIQCVDNNQSVLVSAHTSAGKTVCAEYAIA--LALREKQ---------RVIFTSPIKA 193
Query: 562 LVAEVVGNLSNRLQMYDVKVRELSGDQTL 590
L + + Q DV + ++GD T+
Sbjct: 194 LSNQKYREMYEEFQ--DVGL--MTGDVTI 218
Score = 40 (19.1 bits), Expect = 9.6e-09, Sum P(3) = 9.6e-09
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 131 DEILAVLKNDAVKNPDKKKEIEK 153
DE+ +V ++D+ KK+ EK
Sbjct: 7 DELFSVFEDDSTTASGTKKDKEK 29
>UNIPROTKB|P42285 [details] [associations]
symbol:SKIV2L2 "Superkiller viralicidic activity 2-like 2"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0000178 "exosome (RNase complex)"
evidence=IDA] [GO:0000460 "maturation of 5.8S rRNA" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0003676 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000460 GO:GO:0008026 eggNOG:COG4581 HOGENOM:HOG000163047
KO:K12598 OMA:ENFQKAM InterPro:IPR025696 Pfam:PF13234 EMBL:D29641
EMBL:BX640789 EMBL:BC014669 EMBL:BC028604 EMBL:BC031779
EMBL:BC065258 EMBL:BC104996 EMBL:BC113509 IPI:IPI00647217
RefSeq:NP_056175.3 UniGene:Hs.274531 ProteinModelPortal:P42285
SMR:P42285 IntAct:P42285 STRING:P42285 PhosphoSite:P42285
DMDM:71153172 SWISS-2DPAGE:P42285 PaxDb:P42285 PeptideAtlas:P42285
PRIDE:P42285 DNASU:23517 Ensembl:ENST00000230640 GeneID:23517
KEGG:hsa:23517 UCSC:uc003jpy.4 CTD:23517 GeneCards:GC05P054605
HGNC:HGNC:18734 HPA:HPA037379 neXtProt:NX_P42285
PharmGKB:PA134901921 HOVERGEN:HBG104255 InParanoid:P42285
OrthoDB:EOG4D52WW PhylomeDB:P42285 ChiTaRS:SKIV2L2 GenomeRNAi:23517
NextBio:45957 ArrayExpress:P42285 Bgee:P42285 CleanEx:HS_SKIV2L2
Genevestigator:P42285 GermOnline:ENSG00000039123 Uniprot:P42285
Length = 1042
Score = 164 (62.8 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 50/168 (29%), Positives = 83/168 (49%)
Query: 726 KVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVK 785
K++ V+IF S+K+ A A++ T L+ +T +E + E+ + D +
Sbjct: 379 KMIMERNFQPVIIFSFSKKDCE--AYALQMTKLDFNTD----EEKKMVEEVFSNAIDCLS 432
Query: 786 SNDLK--------DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLP 837
D K LL G IHH G+ ++ +E LF +G ++ L +T T A G+N+P
Sbjct: 433 DEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMP 492
Query: 838 AHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885
A TV+ + ++ + W +S + +QM GRAGR D GI+I
Sbjct: 493 ARTVLFTNARKFDGKDFRW--ISSGEYIQMSGRAGRRGMDD--RGIVI 536
Score = 69 (29.3 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 38/157 (24%), Positives = 67/157 (42%)
Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDII 611
++++ +P+KAL + + Q DV + ++GD T+ + +++TT ++
Sbjct: 184 RVIFTSPIKALSNQKYREMYEEFQ--DVGL--MTGDVTINPTA---SCLVMTTEILRSML 236
Query: 612 TRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671
R G ++ RG V E + +++ V LSAT+P
Sbjct: 237 YR--GSEVMREVAWVIFDEIHYMRDSERGVVWEETII-------LLPDNVHYVFLSATIP 287
Query: 672 NYEDVALFLRVNLEKG---LFYFDNSYRPVPLSQQYI 705
N A ++ +L K + Y D YRP PL Q YI
Sbjct: 288 NARQFAEWI-CHLHKQPCHVIYTD--YRPTPL-QHYI 320
Score = 54 (24.1 bits), Expect = 3.8e-07, Sum P(3) = 3.8e-07
Identities = 25/89 (28%), Positives = 41/89 (46%)
Query: 505 KSALSSADN---ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561
+ A+ DN +L+ A T AGKT A I LAL ++++ +P+KA
Sbjct: 145 REAIQCVDNNQSVLVSAHTSAGKTVCAEYAIA--LALREKQ---------RVIFTSPIKA 193
Query: 562 LVAEVVGNLSNRLQMYDVKVRELSGDQTL 590
L + + Q DV + ++GD T+
Sbjct: 194 LSNQKYREMYEEFQ--DVGL--MTGDVTI 218
Score = 39 (18.8 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 131 DEILAVLKNDAVKNPDKKKEIEK 153
DE+ +V + D+ KK+ EK
Sbjct: 7 DELFSVFEGDSTTAAGTKKDKEK 29
>POMBASE|SPAC694.02 [details] [associations]
symbol:SPAC694.02 "DEAD/DEAH box helicase" species:4896
"Schizosaccharomyces pombe" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC694.02
GO:GO:0005829 GO:GO:0005524 EMBL:CU329670 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG4581 PIR:T50247 RefSeq:NP_594482.1
ProteinModelPortal:Q9P7T8 PRIDE:Q9P7T8 EnsemblFungi:SPAC694.02.1
GeneID:2543333 KEGG:spo:SPAC694.02 HOGENOM:HOG000194492 OMA:HTRDYRI
OrthoDB:EOG4S4SQ7 NextBio:20804349 Uniprot:Q9P7T8
Length = 1717
Score = 159 (61.0 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 45/136 (33%), Positives = 71/136 (52%)
Query: 791 DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYN 850
D L G IHH+G+ R RQ+VE LF G + V+++T TL+ G+N+P TV+ G +
Sbjct: 1219 DALYRGIGIHHSGLNRRYRQIVEVLFRCGQLTVVIATRTLSLGINMPCRTVVFLGDSL-- 1276
Query: 851 PEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQF-- 908
+L+ L+ Q GRAGR +D G + G + Y L + I+ QF
Sbjct: 1277 -------QLNALNFHQAAGRAGRRGFDLLGH-VGFLGVPLHKIYRLLTTKLWDIQGQFPL 1328
Query: 909 VSKLADQLNAEIVLGT 924
+ L QL+ +++ G+
Sbjct: 1329 TTSLVLQLS-QLISGS 1343
Score = 78 (32.5 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 21/70 (30%), Positives = 36/70 (51%)
Query: 508 LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567
L +++ + APT +GKT ++ + + L NDDG ++YVAP KALV ++
Sbjct: 747 LDRDESVFVVAPTSSGKTFISFYAM--EKVLRDNDDGV-------VIYVAPTKALVNQLS 797
Query: 568 GNLSNRLQMY 577
+ R +
Sbjct: 798 AEVYARFNKH 807
Score = 50 (22.7 bits), Expect = 2.9e-05, Sum P(4) = 2.9e-05
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 283 DPQQCQKLAEEVLKILAEGDDREVEN 308
D Q+C+ LAE V K L E + EN
Sbjct: 1099 DRQECEYLAEIVFKTLVEKEREWREN 1124
Score = 42 (19.8 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 995 QVTDLGRIASYYYISHGTI 1013
+V DL + ++YY HG I
Sbjct: 1494 RVLDLYKTYAWYYQKHGNI 1512
Score = 40 (19.1 bits), Expect = 2.9e-05, Sum P(4) = 2.9e-05
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 372 RATAKERQKNLEKSIREEARRLKDES 397
++TA +R K +EK + + K+++
Sbjct: 1139 QSTANQRAKQMEKFEKSATEKQKEQA 1164
Score = 37 (18.1 bits), Expect = 0.00051, Sum P(4) = 0.00051
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 321 LIKFLLRNRLKVVWCTRLAR-------AQDQEERKKIEEEMMGLGP 359
L LL+ L WC ++ R Q E +EE+++ L P
Sbjct: 841 LQSMLLQPALANAWCPKIRRIIFDEIHCIGQMEDGLVEEQLLLLAP 886
>UNIPROTKB|G4MUH1 [details] [associations]
symbol:MGG_07250 "DEAD/DEAH box helicase" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CM001232
GO:GO:0008026 RefSeq:XP_003715470.1 EnsemblFungi:MGG_07250T0
GeneID:2682996 KEGG:mgr:MGG_07250 Uniprot:G4MUH1
Length = 1771
Score = 151 (58.2 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 42/120 (35%), Positives = 61/120 (50%)
Query: 791 DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYN 850
+ L G +HHAGM R RQ+VE L G + V+++T TLA G+N+P TV+ ++
Sbjct: 1211 EALRRGVGVHHAGMNRKYRQVVEMLCRRGFLTVVIATGTLALGINVPCKTVVFSEDSVF- 1269
Query: 851 PEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGII-ITGHSELRYYLSLMNQQLP-IESQF 908
LS L+ Q GRAGR +D G + I H +M+ +LP + QF
Sbjct: 1270 --------LSALNYRQASGRAGRRGFDLLGNVVFNIPTHRSFE----IMSSRLPDLRGQF 1317
Score = 78 (32.5 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 29/104 (27%), Positives = 50/104 (48%)
Query: 507 ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566
A+ + ++ + APT AGKT ++ + + + + ND +VYVAP KALV ++
Sbjct: 725 AIDAKKSLCVIAPTSAGKTFISFYAMKKVMQSSDND---------VLVYVAPTKALVNQI 775
Query: 567 VGNLSNRLQM---YDVKVRELSGDQTLTRQQIEET--QIIVTTP 605
+ R + Y+ + R + T + T QI+VT P
Sbjct: 776 AAEVQGRFKKKFRYE-ESRSVWAIHTRDYRVNNPTGCQILVTVP 818
Score = 41 (19.5 bits), Expect = 9.4e-05, Sum P(2) = 9.4e-05
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 9 AEAHARFKQ-YEYRANSSLVLTTDSRPRDTHEPTG 42
AE RFK+ + Y + S V +R + PTG
Sbjct: 777 AEVQGRFKKKFRYEESRS-VWAIHTRDYRVNNPTG 810
Score = 41 (19.5 bits), Expect = 9.4e-05, Sum P(2) = 9.4e-05
Identities = 14/57 (24%), Positives = 27/57 (47%)
Query: 749 TARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDL-LPY--GFAIHHA 802
+ +A+RD E L L D +E+ H +++ ++ + + Y GF + HA
Sbjct: 3 STKALRDWYTERSGLRVDLVGDFAGKELFAIHGEVLMAHCISQAKVNYQEGFQLLHA 59
>TAIR|locus:2020573 [details] [associations]
symbol:EMB25 "EMBRYO DEFECTIVE 25" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0009793 "embryo development ending in seed dormancy"
evidence=IMP] [GO:0010497 "plasmodesmata-mediated intercellular
transport" evidence=NAS;IMP] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0016441 "posttranscriptional gene silencing"
evidence=IMP] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0016556 "mRNA modification" evidence=RCA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0009570 GO:GO:0003676
GO:GO:0009793 GO:GO:0031047 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010494 GO:GO:0008026 EMBL:AC002062
GO:GO:0003724 GO:GO:0010497 eggNOG:COG4581 GO:GO:0016441
HOGENOM:HOG000245391 EMBL:AK316759 EMBL:AF387007 IPI:IPI00538730
PIR:D96723 RefSeq:NP_177164.1 UniGene:At.35348
ProteinModelPortal:B9DFG3 SMR:B9DFG3 PaxDb:B9DFG3 PRIDE:B9DFG3
EnsemblPlants:AT1G70070.1 GeneID:843343 KEGG:ath:AT1G70070
GeneFarm:2280 TAIR:At1g70070 InParanoid:Q94EZ6 OMA:PSYGMVL
PhylomeDB:B9DFG3 ProtClustDB:CLSN2682754 Genevestigator:B9DFG3
Uniprot:B9DFG3
Length = 1171
Score = 165 (63.1 bits), Expect = 1.8e-08, Sum P(3) = 1.8e-08
Identities = 50/154 (32%), Positives = 76/154 (49%)
Query: 780 HTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAH 839
+ D V+ + K LL G A HHAG + +E+LF G V+V+ +T TLA G+N+PA
Sbjct: 482 YPDAVRESAEKGLLR-GIAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPAR 540
Query: 840 TVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII-TGHSELRYYLSLM 898
T +I + + EL P ++ QM GRAGR D G +++ T L+
Sbjct: 541 TAVI--SSLSKKAGNERIELGPNELYQMAGRAGRRGIDEKGYTVLVQTAFEGAEECCKLV 598
Query: 899 NQQL-PIESQFVSKLADQLNAEIVLGTVQNAKEA 931
+ P+ SQF + LN +V G+ K +
Sbjct: 599 FAGVKPLVSQFTASYGMVLN--LVAGSKVTRKSS 630
Score = 60 (26.2 bits), Expect = 1.8e-08, Sum P(3) = 1.8e-08
Identities = 37/155 (23%), Positives = 64/155 (41%)
Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPE----- 606
++ Y P+KAL + R D V L+GD + + + QI++ T E
Sbjct: 199 RLFYTTPLKALSNQKFREF--RETFGDDNVGLLTGDSAINK----DAQIVIMTTEILRNM 252
Query: 607 KWDIITRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGL 666
+ + S + +RG V E IV I KE ++L+ L
Sbjct: 253 LYQSVGMASSGTGLFHVDAIVLDEVHYLSDISRGTVWEEIV------IYCPKE-VQLICL 305
Query: 667 SATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLS 701
SAT+ N +++A ++ + ++ RPVPL+
Sbjct: 306 SATVANPDELAGWIG-EIHGKTELVTSTRRPVPLT 339
Score = 58 (25.5 bits), Expect = 2.9e-08, Sum P(3) = 2.9e-08
Identities = 28/111 (25%), Positives = 50/111 (45%)
Query: 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIV 554
++++ Q R+ A ++++ APT +GKT +A + +A R ++
Sbjct: 154 RIDKFQ-RLAIEAFLRGSSVVVSAPTSSGKTLIAEAAAVSTVAKGR-----------RLF 201
Query: 555 YVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ-QIEETQIIVTT 604
Y P+KAL + R D V L+GD + + QI +I+TT
Sbjct: 202 YTTPLKALSNQKFREF--RETFGDDNVGLLTGDSAINKDAQI----VIMTT 246
Score = 47 (21.6 bits), Expect = 1.8e-08, Sum P(3) = 1.8e-08
Identities = 15/54 (27%), Positives = 24/54 (44%)
Query: 1119 WAQLAEKALN----LSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERY 1168
W +LAE L L + WS+ P+ +E+L E+ D A ++Y
Sbjct: 866 WDKLAESELGSLWRLEGSLETWSWSLNVPVLSSLSDEDEVLHMSEEYDNAAQKY 919
>FB|FBgn0001986 [details] [associations]
symbol:l(2)35Df "lethal (2) 35Df" species:7227 "Drosophila
melanogaster" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0071013 "catalytic step
2 spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE014134 GO:GO:0022008 GO:GO:0003676 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG4581 GeneTree:ENSGT00690000102230 KO:K12598
OMA:ENFQKAM InterPro:IPR025696 Pfam:PF13234 EMBL:AF145638
RefSeq:NP_524929.1 UniGene:Dm.1748 SMR:Q9Y134 MINT:MINT-942655
STRING:Q9Y134 EnsemblMetazoa:FBtr0080760 GeneID:48782
KEGG:dme:Dmel_CG4152 UCSC:CG4152-RA FlyBase:FBgn0001986
InParanoid:Q9Y134 OrthoDB:EOG4K3JB5 GenomeRNAi:48782 NextBio:839548
Uniprot:Q9Y134
Length = 1055
Score = 161 (61.7 bits), Expect = 2.1e-08, Sum P(3) = 2.1e-08
Identities = 47/154 (30%), Positives = 80/154 (51%)
Query: 736 VLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTD----MVKSNDLKD 791
V+IF S+K+ A++ L+ +T D V + T+ + + ++
Sbjct: 405 VIIFSFSKKDCE--IYAMQMAKLDFNTPDEKKLVDEVFNNAMDVLTEEDRRLPQVENVLP 462
Query: 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNP 851
LL G IHH G+ ++ +E LFG+G ++ L +T T A G+N+PA TV+ + ++
Sbjct: 463 LLRRGIGIHHGGLLPILKETIEILFGEGLIKALFATETFAMGLNMPARTVLFTAPRKFDG 522
Query: 852 EKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885
+K W +S + +QM GRAGR D +GI+I
Sbjct: 523 KKFRW--ISSGEYIQMAGRAGRRGLDD--KGIVI 552
Score = 68 (29.0 bits), Expect = 2.1e-08, Sum P(3) = 2.1e-08
Identities = 40/157 (25%), Positives = 69/157 (43%)
Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDII 611
+++Y P+KAL + ++ + DV + ++GD T+ + +I+TT +++
Sbjct: 196 RVIYTTPIKALSNQKFREFTDEFK--DVGL--VTGDVTINPSA---SCLIMTTEILRNML 248
Query: 612 TRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671
R G ++ RG V E + +++R V LSAT+P
Sbjct: 249 YR--GSEIMREVGWVVFDEIHYMRDKERGVVWEETLI-------LLPDNVRYVFLSATIP 299
Query: 672 NYEDVALFLRVNLEKG---LFYFDNSYRPVPLSQQYI 705
N A ++ +L K + Y D YRP PL Q YI
Sbjct: 300 NARQFAEWV-CHLHKQPCHVVYTD--YRPTPL-QHYI 332
Score = 62 (26.9 bits), Expect = 8.2e-08, Sum P(3) = 8.2e-08
Identities = 22/83 (26%), Positives = 42/83 (50%)
Query: 508 LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567
+ ++ ++L+ A T AGKT VA I + LA + +++Y P+KAL +
Sbjct: 163 IDNSQSVLVSAHTSAGKTVVAEYAIAKSLAAKQ-----------RVIYTTPIKALSNQKF 211
Query: 568 GNLSNRLQMYDVKVRELSGDQTL 590
++ + DV + ++GD T+
Sbjct: 212 REFTDEFK--DVGL--VTGDVTI 230
Score = 41 (19.5 bits), Expect = 2.1e-08, Sum P(3) = 2.1e-08
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 896 SLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKE 930
+L+ Q I F + L N VL T+Q AK+
Sbjct: 747 TLITQISSIRVYFPNDLRSADNRRAVLKTIQEAKK 781
>UNIPROTKB|F5H6Y7 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0004386 EMBL:AL844853 EMBL:AL662849 EMBL:BX005143
EMBL:CR759782 EMBL:CR753822 EMBL:CR753845 InterPro:IPR025696
Pfam:PF13234 HGNC:HGNC:10898 ChiTaRS:SKIV2L IPI:IPI00946735
SMR:F5H6Y7 Ensembl:ENST00000547025 Ensembl:ENST00000547224
Ensembl:ENST00000547296 Ensembl:ENST00000548561
Ensembl:ENST00000552010 Uniprot:F5H6Y7
Length = 880
Score = 168 (64.2 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 53/180 (29%), Positives = 92/180 (51%)
Query: 736 VLIFVHSRKETAKTARAIRD----TALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791
V++F SR + A + T+ E + FL+ ++R + S + + + +
Sbjct: 203 VVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQR-CLAR-LRGSDRQLPQVLHMSE 260
Query: 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNP 851
LL G +HH+G+ +++VE LF G V+VL +T T A GVN+PA TV+ + +
Sbjct: 261 LLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKH-- 318
Query: 852 EKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT-GH-SELR-YYLSLMNQQLPIESQF 908
+ + +L P + +QM GRAGR D G I++ G E+ + +M + ++SQF
Sbjct: 319 DGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQF 378
>DICTYBASE|DDB_G0278827 [details] [associations]
symbol:DDB_G0278827 "Probable ATP-dependent RNA
helicase DDX60" species:44689 "Dictyostelium discoideum"
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0278827 GO:GO:0005524 GO:GO:0005634 GO:GO:0003676
EMBL:AAFI02000024 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG4581 RefSeq:XP_641993.1
ProteinModelPortal:Q54XN7 EnsemblProtists:DDB0206223 GeneID:8621725
KEGG:ddi:DDB_G0278827 InParanoid:Q54XN7 OMA:RESALIC Uniprot:Q54XN7
Length = 1816
Score = 145 (56.1 bits), Expect = 3.6e-08, Sum P(3) = 3.6e-08
Identities = 45/128 (35%), Positives = 63/128 (49%)
Query: 776 ILQSHTD-MVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGV 834
+L S D VK + L L G A HH G + + VE LF +QV+ +T+TLA GV
Sbjct: 1247 LLSSDIDEKVKKDPLAPALTQGIAAHHGGCDKNYLRNVEYLFRSKKIQVVFATSTLAVGV 1306
Query: 835 NLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYY 894
N PA + + G Y L+ L Q GRAGR +D+YG +I G + +
Sbjct: 1307 NAPAKSSVFLGDSPY---------LNVLTSKQCAGRAGRRGFDNYGN-VIFVGLPKQKIN 1356
Query: 895 LSLMNQQL 902
L+N +L
Sbjct: 1357 -RLLNSRL 1363
Score = 91 (37.1 bits), Expect = 3.6e-08, Sum P(3) = 3.6e-08
Identities = 33/107 (30%), Positives = 55/107 (51%)
Query: 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALV----AEVV 567
++ L+CA T +GKT ++ +Q+ L ++DG +V+V P KALV AEV+
Sbjct: 833 ESALICASTSSGKTFISFYCF-EQI-LKESNDGI-------VVFVCPTKALVNQMYAEVL 883
Query: 568 GNLSNRLQMYDVKV--RELSGDQTLT-RQQIEETQIIVTTPEKWDII 611
G Q + + ++ G T R IE QI++T P+ +I+
Sbjct: 884 GRYDKNYQAINHRPSNHKMVGVFTRDFRLNIETCQILITVPQCLEIL 930
Score = 40 (19.1 bits), Expect = 3.6e-08, Sum P(3) = 3.6e-08
Identities = 18/75 (24%), Positives = 33/75 (44%)
Query: 83 DPDADAAAASEGTYQPKTKETRAAYEAMLSVIQQQLG-GQPLNI-VSGAADEILAVLKND 140
+PDA + E T++ K + RA +++ S + P NI + + L+ +
Sbjct: 507 EPDAFSIKLKETTFKTKKHKQRAEDKSVGSFKKYADSLNDPRNILIINKLNPTKEELEKE 566
Query: 141 AVKNP--DKKKEIEK 153
+K D KK +K
Sbjct: 567 RIKKEKEDSKKSYKK 581
>TAIR|locus:2063648 [details] [associations]
symbol:HEN2 "hua enhancer 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0010093
"specification of floral organ identity" evidence=IMP] [GO:0016070
"RNA metabolic process" evidence=TAS] [GO:0005829 "cytosol"
evidence=IDA] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
[GO:0003002 "regionalization" evidence=RCA] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=RCA] [GO:0006396 "RNA
processing" evidence=RCA] [GO:0007155 "cell adhesion" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010090 "trichome morphogenesis"
evidence=RCA] [GO:0010162 "seed dormancy process" evidence=RCA]
[GO:0010182 "sugar mediated signaling pathway" evidence=RCA]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] [GO:0010388 "cullin deneddylation"
evidence=RCA] [GO:0016567 "protein ubiquitination" evidence=RCA]
[GO:0016571 "histone methylation" evidence=RCA] [GO:0016579
"protein deubiquitination" evidence=RCA] [GO:0019915 "lipid
storage" evidence=RCA] [GO:0030422 "production of siRNA involved in
RNA interference" evidence=RCA] [GO:0033043 "regulation of
organelle organization" evidence=RCA] [GO:0035196 "production of
miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045010 "actin nucleation" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0048449 "floral organ formation" evidence=RCA] [GO:0050826
"response to freezing" evidence=RCA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
GO:GO:0005634 EMBL:CP002685 GO:GO:0003676 GO:GO:0010093
GO:GO:0016070 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AC005171 GO:GO:0003724 HOGENOM:HOG000163047
KO:K12598 InterPro:IPR025696 Pfam:PF13234 EMBL:BT005794
IPI:IPI00539432 PIR:B84481 RefSeq:NP_565338.1 UniGene:At.20667
ProteinModelPortal:Q9ZVW2 SMR:Q9ZVW2 IntAct:Q9ZVW2 PRIDE:Q9ZVW2
EnsemblPlants:AT2G06990.1 GeneID:815269 KEGG:ath:AT2G06990
TAIR:At2g06990 InParanoid:Q9ZVW2 OMA:TFDRVCD PhylomeDB:Q9ZVW2
ProtClustDB:CLSN2688028 ArrayExpress:Q9ZVW2 Genevestigator:Q9ZVW2
Uniprot:Q9ZVW2
Length = 995
Score = 158 (60.7 bits), Expect = 4.3e-08, Sum P(3) = 4.3e-08
Identities = 51/177 (28%), Positives = 88/177 (49%)
Query: 736 VLIFVHSRKETAKTARAIRDTALENDTLGRFLKED-SVSREILQSHTDMVKSNDLK-DLL 793
V+IF SR+E + A ++ D +++ + + + L + + +L LL
Sbjct: 339 VIIFSFSRRECEQHALSMSKLDFNTDEEKEVVEQVFNNAMQCLNEEDRSLPAIELMLPLL 398
Query: 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEK 853
G A+HH+G+ ++LVE LF +G V+ L +T T A G+N+PA TV+ + ++ +
Sbjct: 399 QRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDS 458
Query: 854 GAWTELSPLDIMQMLGRAGRPQYDSYGEGII-ITGHSELRYYLSLM-NQQLPIESQF 908
+ + + +QM GRAGR D G II I E+ +M + P+ S F
Sbjct: 459 HRY--IGSGEYIQMSGRAGRRGKDERGICIIMIDEQMEMNTLRDMMLGKPAPLLSTF 513
Score = 68 (29.0 bits), Expect = 4.3e-08, Sum P(3) = 4.3e-08
Identities = 30/97 (30%), Positives = 49/97 (50%)
Query: 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIV 554
+L+ QS V + L ++IL+ A T AGKT VA I A+ D +++
Sbjct: 81 KLDPFQS-VSVACLERKESILVSAHTSAGKTAVAEYAI----AMAFRD-------KQRVI 128
Query: 555 YVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLT 591
Y +P+KAL + L + + DV + ++GD TL+
Sbjct: 129 YTSPLKALSNQKYRELQHEFK--DVGL--MTGDVTLS 161
Score = 57 (25.1 bits), Expect = 5.4e-07, Sum P(3) = 5.4e-07
Identities = 35/153 (22%), Positives = 64/153 (41%)
Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDII 611
+++Y +P+KAL + L + + DV + ++GD TL+ + +++TT ++
Sbjct: 126 RVIYTSPLKALSNQKYRELQHEFK--DVGL--MTGDVTLSPNA---SCLVMTTEILRAML 178
Query: 612 TRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671
R G ++ RG V E I I++V LSAT+
Sbjct: 179 YR--GSEVLKEVAWVIFDEIHYMKDRERGVVWEE-------SIIFLPPAIKMVFLSATMS 229
Query: 672 NYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQY 704
N + A ++ ++ +RP PL Q Y
Sbjct: 230 NATEFAEWICYLHKQPCHVVYTDFRPTPL-QHY 261
Score = 40 (19.1 bits), Expect = 4.3e-08, Sum P(3) = 4.3e-08
Identities = 8/41 (19%), Positives = 23/41 (56%)
Query: 1123 AEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF 1163
+ + +NL +TK + +Q R+ I +E ++++ +++
Sbjct: 870 SNEQVNLRNELTKPLQQLQDSARKIAEIQHECKLEIDVEEY 910
>CGD|CAL0003794 [details] [associations]
symbol:orf19.1335 species:5476 "Candida albicans" [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0034459 "ATP-dependent
3'-5' RNA helicase activity" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0031499 "TRAMP complex" evidence=IEA] [GO:0034476
"U5 snRNA 3'-end processing" evidence=IEA] [GO:0071049 "nuclear
retention of pre-mRNA with aberrant 3'-ends at the site of
transcription" evidence=IEA] [GO:0000467 "exonucleolytic trimming
to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=IEA] [GO:0043629 "ncRNA polyadenylation"
evidence=IEA] [GO:0071051 "polyadenylation-dependent snoRNA 3'-end
processing" evidence=IEA] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IEA]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=IEA] [GO:0034475 "U4 snRNA 3'-end processing"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
CGD:CAL0003794 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG4581
EMBL:AACQ01000188 EMBL:AACQ01000187 KO:K12598 InterPro:IPR025696
Pfam:PF13234 RefSeq:XP_711657.1 RefSeq:XP_711675.1
RefSeq:XP_888948.1 STRING:Q59PN6 GeneID:3646717 GeneID:3646739
GeneID:3703907 KEGG:cal:CaO19.1335 KEGG:cal:CaO19.8915
KEGG:cal:CaO19_1335 Uniprot:Q59PN6
Length = 1106
Score = 152 (58.6 bits), Expect = 6.7e-08, Sum P(4) = 6.7e-08
Identities = 43/162 (26%), Positives = 84/162 (51%)
Query: 726 KVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSR-EIL-QSHTDM 783
K++ + + V++F S+++ A + D L + + E+L ++ ++
Sbjct: 435 KMIYMKKYNPVIVFSFSKRDCESLALKMSKLDFNTDEERNSLTQIFYNAIELLPEADREL 494
Query: 784 VKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVII 843
+ ++ LL G IHH+G+ ++++E LF +G ++VL +T T + G+N+PA TV+
Sbjct: 495 PQIKNILPLLKRGIGIHHSGLLPILKEIIEILFQEGFLKVLFATETFSIGLNMPAKTVVF 554
Query: 844 KGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885
+ ++ W +S + +QM GRAGR D GI+I
Sbjct: 555 TSVRKWDGVGFRW--VSGGEYIQMSGRAGRRGLDD--RGIVI 592
Score = 61 (26.5 bits), Expect = 6.7e-08, Sum P(4) = 6.7e-08
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 506 SALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562
S + +++L+ A T AGKT VA I Q L +++Y +P+KAL
Sbjct: 194 SCIDRNESVLVSAHTSAGKTVVAEYAIAQSL-----------RDKQRVIYTSPIKAL 239
Score = 58 (25.5 bits), Expect = 6.7e-08, Sum P(4) = 6.7e-08
Identities = 36/156 (23%), Positives = 66/156 (42%)
Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDII 611
+++Y +P+KAL + LQ V ++GD T+ + +++TT ++
Sbjct: 229 RVIYTSPIKALSNQKF----RELQAIFGDVGLMTGDVTINP---DAGCLVMTTEILRSML 281
Query: 612 TRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671
R G ++ +RG V E + + + V LSAT+P
Sbjct: 282 YR--GSEVMREVAWVVFDEVHYMRDKSRGVVWEETII-------LLPDKVHYVFLSATIP 332
Query: 672 NYEDVALFL-RV-NLEKGLFYFDNSYRPVPLSQQYI 705
N + A ++ ++ N + Y D +RP PL Q Y+
Sbjct: 333 NAMEFAEWIVKIHNQPCHVVYTD--FRPTPL-QHYL 365
Score = 39 (18.8 bits), Expect = 6.7e-08, Sum P(4) = 6.7e-08
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 1240 VEDNDGEYILHHEYFMLKK 1258
VE E++L H +F +K
Sbjct: 632 VEGISPEFMLEHSFFQFQK 650
>UNIPROTKB|F1N993 [details] [associations]
symbol:F1N993 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000178 "exosome (RNase
complex)" evidence=IEA] [GO:0000460 "maturation of 5.8S rRNA"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 GO:GO:0000178 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000460
GO:GO:0008026 GeneTree:ENSGT00690000102230 OMA:ENFQKAM
InterPro:IPR025696 Pfam:PF13234 EMBL:AADN02054537 EMBL:AADN02054530
EMBL:AADN02054531 EMBL:AADN02054532 EMBL:AADN02054533
EMBL:AADN02054534 EMBL:AADN02054535 EMBL:AADN02054536
IPI:IPI00599020 Ensembl:ENSGALT00000023719 Uniprot:F1N993
Length = 1031
Score = 163 (62.4 bits), Expect = 9.3e-08, P = 9.3e-08
Identities = 50/168 (29%), Positives = 82/168 (48%)
Query: 726 KVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVK 785
K++ V+IF S+K+ A A++ T L+ +T +E + E+ + D +
Sbjct: 368 KMIMERNFQPVIIFSFSKKDCE--AYALQMTKLDFNTD----EEKKMVEEVFNNAIDCLS 421
Query: 786 SNDLK--------DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLP 837
D K LL G IHH G+ ++ +E LF +G ++ L +T T A G+N+P
Sbjct: 422 DEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMP 481
Query: 838 AHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885
A TV+ ++ + W +S + +QM GRAGR D GI+I
Sbjct: 482 ARTVLFTSASKFDGKDFRW--ISSGEYIQMSGRAGRRGMDD--RGIVI 525
>UNIPROTKB|E1C287 [details] [associations]
symbol:E1C287 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0008026 GeneTree:ENSGT00550000074822 EMBL:AADN02012856
IPI:IPI00587427 Ensembl:ENSGALT00000009827 OMA:HAVKDES
Uniprot:E1C287
Length = 177
Score = 130 (50.8 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 48/165 (29%), Positives = 75/165 (45%)
Query: 606 EKWDIITRKSGDRTYTQLVKXXXXXXXXXXXX-NRGPVLESIVAR--TVRQI--ETTKEH 660
EKWD +TR+ D + QLV+ +RG LE +V+R TV+ ++ H
Sbjct: 2 EKWDSMTRRWKDNSIVQLVRLFLIDEVHVIKDESRGATLEVVVSRMKTVQSSLWRLSENH 61
Query: 661 ----IRLVGLSATLPNYEDVALFLRVNLEKGL-FYFDNSYRPVPLSQQYIGIQVKKPLQR 715
+R V +SAT+PN ED+A +L + D RPV L + +G
Sbjct: 62 DVPPLRFVAVSATIPNAEDIAEWLSDGKMPAVCLKVDEDQRPVKLRKIVLGFPCSDSQTE 121
Query: 716 FQLMNDLCYE--KVV-AVAGKHQVLIFVHSRKETAKTARAIRDTA 757
F+ L Y+ V+ A + + VL+F +RK + A + A
Sbjct: 122 FKFDLTLNYKIASVIQAYSDQKPVLVFCATRKGVQQAASVLSKDA 166
>UNIPROTKB|Q5H9U9 [details] [associations]
symbol:DDX60L "Probable ATP-dependent RNA helicase
DDX60-like" species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG4581 HOGENOM:HOG000169263 HOVERGEN:HBG107797
EMBL:AL832950 EMBL:CR933601 EMBL:AC079926 EMBL:AC093888
EMBL:AK055595 IPI:IPI00853133 IPI:IPI00935252 RefSeq:NP_001012985.1
UniGene:Hs.535011 ProteinModelPortal:Q5H9U9 STRING:Q5H9U9
PhosphoSite:Q5H9U9 DMDM:74755482 PaxDb:Q5H9U9 PRIDE:Q5H9U9
Ensembl:ENST00000260184 Ensembl:ENST00000505890
Ensembl:ENST00000511577 GeneID:91351 KEGG:hsa:91351 UCSC:uc003irq.4
CTD:91351 GeneCards:GC04M169277 HGNC:HGNC:26429 HPA:HPA043211
neXtProt:NX_Q5H9U9 PharmGKB:PA162383445 InParanoid:Q5H9U9
OMA:AQDSVYL GenomeRNAi:91351 NextBio:77184 ArrayExpress:Q5H9U9
Bgee:Q5H9U9 CleanEx:HS_DDX60L Genevestigator:Q5H9U9 Uniprot:Q5H9U9
Length = 1706
Score = 128 (50.1 bits), Expect = 5.2e-07, Sum P(3) = 5.2e-07
Identities = 35/112 (31%), Positives = 53/112 (47%)
Query: 769 EDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTA 828
+DS +L +LK L G HH+ M +++ VE LF G ++V+ +T
Sbjct: 1217 KDSTLERVLPRVRFTRHGKELKALAQRGIGYHHSSMYFKEKEFVEILFVKGLIRVVTATE 1276
Query: 829 TLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYG 880
TLA G+++P +V+ +Y L L+ QM GRAGR D G
Sbjct: 1277 TLALGIHMPCKSVVFAQDSVY---------LDALNYRQMSGRAGRRGQDLLG 1319
Score = 94 (38.1 bits), Expect = 5.2e-07, Sum P(3) = 5.2e-07
Identities = 29/101 (28%), Positives = 49/101 (48%)
Query: 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571
++ ++ APT +GKT + + + L +D G +VYVAP K+LV +V +
Sbjct: 759 ESAVIVAPTSSGKTYASYYCM--EKVLRESDVGV-------VVYVAPAKSLVGQVAATVE 809
Query: 572 NRLQMYDVKVRELSGDQTLTR-QQIEETQIIVTTPEKWDII 611
NR R L G T + Q+++T PE ++I+
Sbjct: 810 NRFTKTLPAGRTLCGAFTRDYCHNVLNCQVLITVPECFEIL 850
Score = 42 (19.8 bits), Expect = 5.2e-07, Sum P(3) = 5.2e-07
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 121 QPLNIVSGAADEILAVLKNDAVKNPDKKKEIEK 153
+P SGA+ EIL K + KKK K
Sbjct: 545 RPKEDSSGASGEILQNTKPHQITKKSKKKSFLK 577
>UNIPROTKB|Q8EGU0 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 125 (49.1 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 43/138 (31%), Positives = 66/138 (47%)
Query: 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNY 551
G QL +VQ +V AL D I+ CA TG GKT L +L+QLA D
Sbjct: 20 GYQQLTQVQQQVIPLALVGKD-IMACAQTGTGKTAAFALPVLEQLAAKPADKPLL----- 73
Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ--IEE-TQIIVTTPEK- 607
+ + + P + L +V N+ Q +K + G + Q+ +E+ I+V TP +
Sbjct: 74 RALVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQRKGVEQGVDILVATPGRL 133
Query: 608 WDIITRKSGD-RTYTQLV 624
+DII + + D + T LV
Sbjct: 134 FDIIGQFNLDLSSVTTLV 151
Score = 75 (31.5 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 29/110 (26%), Positives = 49/110 (44%)
Query: 799 IHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTE 858
+ H T+G R V D F G ++VLV+T A G+++ A ++I N E E
Sbjct: 270 VFHGDKTQGARNRVLDDFKAGKLRVLVATDVAARGLDIQALPLVI------NLELPFLAE 323
Query: 859 LSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYL-SLMNQQLPIESQ 907
D + +GR GR + E+ + +L+ ++LP+ Q
Sbjct: 324 ----DYVHRIGRTGRAGLSGRAISFVSPADDEMLAEIEALIGEKLPVTVQ 369
>TIGR_CMR|SO_1501 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 125 (49.1 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 43/138 (31%), Positives = 66/138 (47%)
Query: 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNY 551
G QL +VQ +V AL D I+ CA TG GKT L +L+QLA D
Sbjct: 20 GYQQLTQVQQQVIPLALVGKD-IMACAQTGTGKTAAFALPVLEQLAAKPADKPLL----- 73
Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ--IEE-TQIIVTTPEK- 607
+ + + P + L +V N+ Q +K + G + Q+ +E+ I+V TP +
Sbjct: 74 RALVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQRKGVEQGVDILVATPGRL 133
Query: 608 WDIITRKSGD-RTYTQLV 624
+DII + + D + T LV
Sbjct: 134 FDIIGQFNLDLSSVTTLV 151
Score = 75 (31.5 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 29/110 (26%), Positives = 49/110 (44%)
Query: 799 IHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTE 858
+ H T+G R V D F G ++VLV+T A G+++ A ++I N E E
Sbjct: 270 VFHGDKTQGARNRVLDDFKAGKLRVLVATDVAARGLDIQALPLVI------NLELPFLAE 323
Query: 859 LSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYL-SLMNQQLPIESQ 907
D + +GR GR + E+ + +L+ ++LP+ Q
Sbjct: 324 ----DYVHRIGRTGRAGLSGRAISFVSPADDEMLAEIEALIGEKLPVTVQ 369
>UNIPROTKB|F1P0I1 [details] [associations]
symbol:F1P0I1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
OMA:QDCTYAD GeneTree:ENSGT00690000102154 EMBL:AADN02016399
IPI:IPI00595626 Ensembl:ENSGALT00000015699 Uniprot:F1P0I1
Length = 1313
Score = 113 (44.8 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 796 GFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIY 849
G HH M +RQ VE LF G+++V+ +T+TLA G+N+P +V+ ++
Sbjct: 1249 GIGYHHGAMAMKERQTVEMLFRLGYIKVVTATSTLALGINMPCRSVVFAEDSVF 1302
Score = 105 (42.0 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 35/122 (28%), Positives = 67/122 (54%)
Query: 507 ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566
A+ + ++ ++ APT +GKT + + + L +D+G +VYVAP KALV +V
Sbjct: 753 AVDNNESAVIVAPTSSGKTYASYYCM--EKVLKMSDEGV-------VVYVAPTKALVNQV 803
Query: 567 VGNLSNRL--QMYDVKVRELSGDQTLT-RQQIEETQIIVTTPEKWDIITRKSGDRTYTQL 623
VG++ +R ++ D V + G T R + +QI+VT P+ +I+ +++T+
Sbjct: 804 VGSVYSRFTKKLPDGLV--VCGVFTRDYRHDVMNSQILVTVPQCLEILMLSPRCQSWTKR 861
Query: 624 VK 625
++
Sbjct: 862 IQ 863
Score = 38 (18.4 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 6/14 (42%), Positives = 13/14 (92%)
Query: 339 ARAQDQEERKKIEE 352
A+++D +ERK+I++
Sbjct: 503 AKSKDADERKQIQK 516
Score = 37 (18.1 bits), Expect = 2.0e-06, Sum P(3) = 2.0e-06
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 132 EILAVLKNDAVKNPDKKKEIEK 153
EI+A N +K ++KKE E+
Sbjct: 561 EIIAEENNRRLKAKEEKKEEEQ 582
Score = 37 (18.1 bits), Expect = 2.0e-06, Sum P(3) = 2.0e-06
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 130 ADEILAVLKN-DAV-KNPDKKKEIEKL 154
++E V N DA K+ D++K+I+KL
Sbjct: 491 SEEYERVRSNADAKSKDADERKQIQKL 517
>UNIPROTKB|Q4K580 [details] [associations]
symbol:lhr "Putative ATP-dependent helicase" species:220664
"Pseudomonas protegens Pf-5" [GO:0006139 "nucleobase-containing
compound metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR005471 InterPro:IPR011545 InterPro:IPR013701
Pfam:PF00270 Pfam:PF00271 Pfam:PF08494 Pfam:PF09339 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
GO:GO:0006139 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000076
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG1201 HOGENOM:HOG000238716 KO:K03724 RefSeq:YP_262603.2
GeneID:3479923 KEGG:pfl:PFL_5535 PATRIC:19880561
ProtClustDB:CLSK838736 BioCyc:PFLU220664:GIX8-5572-MONOMER
Uniprot:Q4K580
Length = 1428
Score = 153 (58.9 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 95/350 (27%), Positives = 149/350 (42%)
Query: 485 WAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDG 544
W + F +T Q+R + ++ + L+ APTG+GKT A L ++ L G
Sbjct: 21 WFKHTFAAVTP---AQARAWP-LIAQRRSTLIAAPTGSGKTLTAFLAVIDDLVRQGLAGG 76
Query: 545 SFNHSNYKIVYVAPMKALVAEVVGNLSNRL-----QMYDVKVRELS-------GDQTLT- 591
+VYV+P+KAL ++ NL L Q+ + + ELS GD
Sbjct: 77 GQLPDATLVVYVSPLKALSNDIQINLQQPLAGITEQLRRMGLPELSISTAVRTGDTPQKD 136
Query: 592 RQQIEET--QIIVTTPEK-WDIITRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVA 648
R + ++ QI+VTTPE + ++ SG R RG L +
Sbjct: 137 RNAMRKSAPQILVTTPESLYVLLGSDSGRRMLASTRSVIIDEIHALAGSKRGSHLALSLE 196
Query: 649 RTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSY-RPVPLSQQYIGI 707
R Q +R +GLSAT E V+ FL V + D + RP L I
Sbjct: 197 RL--QALCAAPLLR-IGLSATQKPIEAVSRFL-VGHGRPCEIVDIGHARPRDLD-----I 247
Query: 708 QVKK-PLQRFQLMND---LCYEKVVAVAGKHQV-LIFVHSRKETAKTARAIRDTALENDT 762
+V PL + ND L YE++ +A +H+ LIFV++R+ + AR + + L
Sbjct: 248 EVPPVPLSAV-MANDVWELVYERLANLAREHRTTLIFVNTRRLAERLARHLSER-LGKQA 305
Query: 763 LGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLV 812
+ S+++E +K+ DL+ L+ A G+ GD LV
Sbjct: 306 VAAH--HGSLAKEQRLEAEQRLKAGDLQVLI--ATASLELGIDIGDVDLV 351
Score = 54 (24.1 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 16/58 (27%), Positives = 32/58 (55%)
Query: 1046 QDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSA 1103
+D+ +E A LLD V ++L P A ++VL Q ++++ + S + + + Q+A
Sbjct: 387 RDDLIECAALLDCVRRGELDTLLIPHAPLDVLAQQIVAEVSCQEWSEAALLDMLRQAA 444
>UNIPROTKB|F1RIW4 [details] [associations]
symbol:DDX60 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:1900246 "positive regulation of RIG-I signaling
pathway" evidence=IEA] [GO:1900245 "positive regulation of MDA-5
signaling pathway" evidence=IEA] [GO:0051607 "defense response to
virus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003727 "single-stranded RNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005737 GO:GO:0003727 GO:GO:0051607
GO:GO:0003690 GO:GO:0003725 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0008026 OMA:QDCTYAD GO:GO:1900245 GO:GO:1900246
GeneTree:ENSGT00690000102154 EMBL:AEMK01191618 EMBL:CU469408
Ensembl:ENSSSCT00000010657 Uniprot:F1RIW4
Length = 1705
Score = 150 (57.9 bits), Expect = 1.7e-05, Sum P(3) = 1.7e-05
Identities = 40/120 (33%), Positives = 61/120 (50%)
Query: 766 FLKEDSVSREILQSHTDMVKSN----DLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHV 821
+ + ++ + LQ+ D VK +LK L G HH+ + ++QLVE LF G +
Sbjct: 1219 YADQKALDAQTLQTVFDRVKLTRKGAELKALAARGVGYHHSSLNFKEKQLVEILFRKGFI 1278
Query: 822 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGE 881
+V+ +T TLA G+N+P +V+ IY L L+ QM GRAGR D G+
Sbjct: 1279 RVVTATGTLALGINMPCKSVVFAQNSIY---------LDALNYRQMSGRAGRRGQDLLGD 1329
Score = 56 (24.8 bits), Expect = 1.7e-05, Sum P(3) = 1.7e-05
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 553 IVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLT-RQQIEETQIIVTTPEKWDII 611
+VYV +ALV +V + NR + L G T R +QI++T P ++I+
Sbjct: 805 LVYVLINQALVNQVAATVQNRFRKNLPDGEALCGVFTRDYRHDALNSQILITVPACFEIL 864
Score = 42 (19.8 bits), Expect = 1.7e-05, Sum P(3) = 1.7e-05
Identities = 17/70 (24%), Positives = 27/70 (38%)
Query: 444 DLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRV 503
D P + K ++E+ V HKPL + K + P + Q V R
Sbjct: 477 DDPVVTSLVKQKEFDEL-VHWHSHKPLSDDYDRTKCQFNEKSRDPYYLRSVQKYHVFQRF 535
Query: 504 YKSALSSADN 513
Y ++L S +
Sbjct: 536 YGNSLESVSS 545
>UNIPROTKB|H9L353 [details] [associations]
symbol:H9L353 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192
GeneTree:ENSGT00640000091272 GO:GO:0008026 EMBL:AADN02064072
Ensembl:ENSGALT00000036127 OMA:CTERLTE Uniprot:H9L353
Length = 98
Score = 109 (43.4 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 26/78 (33%), Positives = 45/78 (57%)
Query: 548 HSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVRELSGDQTLTRQQIEETQIIVTTPE 606
+S + VY+ PM+AL +V + + Q + KV L+G+ + + + + II++TPE
Sbjct: 5 NSEGRCVYITPMEALAEQVFMDWYEKFQERLNKKVVLLTGETSTDLKLLGKGNIIISTPE 64
Query: 607 KWDIITRKSGDRTYTQLV 624
KWDI++R+ R Q V
Sbjct: 65 KWDILSRRWKQRKNVQNV 82
>GENEDB_PFALCIPARUM|PF14_0234 [details] [associations]
symbol:PF14_0234 "DNA-directed DNA polymerase,
putative" species:5833 "Plasmodium falciparum" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014187 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0003887 KO:K02349
RefSeq:XP_001348408.1 ProteinModelPortal:Q8ILK9
EnsemblProtists:PF14_0234:mRNA GeneID:811816 KEGG:pfa:PF14_0234
EuPathDB:PlasmoDB:PF3D7_1425400 HOGENOM:HOG000281276
ProtClustDB:CLSZ2432457 Uniprot:Q8ILK9
Length = 1236
Score = 77 (32.2 bits), Expect = 0.00096, Sum P(3) = 0.00096
Identities = 27/99 (27%), Positives = 49/99 (49%)
Query: 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPV 698
RG +E+IV++ + + + I+++ +S TL N + ++ K FY ++YRP
Sbjct: 221 RGIYIENIVSK-ILYMNKKRSRIKIICMSGTLNNISILKKWM-----KAKFYI-STYRPQ 273
Query: 699 PLSQQYI-GIQVKKPLQ--RFQ------LMNDLCYEKVV 728
+ + Y+ V K +Q +F ND CY+K V
Sbjct: 274 EIKEHYVCNFNVYKKVQDGKFYNTCNVFSFNDTCYDKNV 312
Score = 76 (31.8 bits), Expect = 0.00096, Sum P(3) = 0.00096
Identities = 32/137 (23%), Positives = 58/137 (42%)
Query: 445 LPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVY 504
L + + F K Y IH +D N K KI E+ EW + + ++N
Sbjct: 29 LKDVCKNFIKKDYS-IHHYVTNPIIID-NYKKEKIKELYEWQDECLRELRKVN------- 79
Query: 505 KSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564
+N + APT GKT V L I +++ + +I ++ P+K+L+
Sbjct: 80 ---WEKGENFICVAPTSGGKTLVTELFIFEEI----------KNGKKQIFFLFPLKSLIN 126
Query: 565 EVVGNLSNRLQMYDVKV 581
E + L N + ++++
Sbjct: 127 EKMTYLKNICKGTNIRI 143
Score = 75 (31.5 bits), Expect = 0.00096, Sum P(3) = 0.00096
Identities = 37/167 (22%), Positives = 75/167 (44%)
Query: 718 LMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRD--TALENDTLGRFLKEDSVSRE 775
L+N L Y + + LIF ++K I + L++ + +++ D +E
Sbjct: 624 LINSLLYFALHSYINNLNTLIFCCTKKMCEFYINLINEYLNTLKSLPIPQYI--DMKRKE 681
Query: 776 ILQS--HTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWG 833
+ + + D + L+ G +++ ++ ++L+E + + + +L T+TL+ G
Sbjct: 682 LKEKIYNIDKCIYEKMHKLISNGLCYYYSDISHSVKRLLEVAYKEKTLFLLTCTSTLSVG 741
Query: 834 VNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR-PQYDSY 879
+NL VII + A L+ QM+GRA R + DS+
Sbjct: 742 LNLFVDRVIISSPFV------AQNFLTYTQYKQMIGRAARLKKGDSF 782
>UNIPROTKB|Q8ILK9 [details] [associations]
symbol:PF14_0234 "DNA-directed DNA polymerase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014187 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0003887 KO:K02349
RefSeq:XP_001348408.1 ProteinModelPortal:Q8ILK9
EnsemblProtists:PF14_0234:mRNA GeneID:811816 KEGG:pfa:PF14_0234
EuPathDB:PlasmoDB:PF3D7_1425400 HOGENOM:HOG000281276
ProtClustDB:CLSZ2432457 Uniprot:Q8ILK9
Length = 1236
Score = 77 (32.2 bits), Expect = 0.00096, Sum P(3) = 0.00096
Identities = 27/99 (27%), Positives = 49/99 (49%)
Query: 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPV 698
RG +E+IV++ + + + I+++ +S TL N + ++ K FY ++YRP
Sbjct: 221 RGIYIENIVSK-ILYMNKKRSRIKIICMSGTLNNISILKKWM-----KAKFYI-STYRPQ 273
Query: 699 PLSQQYI-GIQVKKPLQ--RFQ------LMNDLCYEKVV 728
+ + Y+ V K +Q +F ND CY+K V
Sbjct: 274 EIKEHYVCNFNVYKKVQDGKFYNTCNVFSFNDTCYDKNV 312
Score = 76 (31.8 bits), Expect = 0.00096, Sum P(3) = 0.00096
Identities = 32/137 (23%), Positives = 58/137 (42%)
Query: 445 LPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVY 504
L + + F K Y IH +D N K KI E+ EW + + ++N
Sbjct: 29 LKDVCKNFIKKDYS-IHHYVTNPIIID-NYKKEKIKELYEWQDECLRELRKVN------- 79
Query: 505 KSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564
+N + APT GKT V L I +++ + +I ++ P+K+L+
Sbjct: 80 ---WEKGENFICVAPTSGGKTLVTELFIFEEI----------KNGKKQIFFLFPLKSLIN 126
Query: 565 EVVGNLSNRLQMYDVKV 581
E + L N + ++++
Sbjct: 127 EKMTYLKNICKGTNIRI 143
Score = 75 (31.5 bits), Expect = 0.00096, Sum P(3) = 0.00096
Identities = 37/167 (22%), Positives = 75/167 (44%)
Query: 718 LMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRD--TALENDTLGRFLKEDSVSRE 775
L+N L Y + + LIF ++K I + L++ + +++ D +E
Sbjct: 624 LINSLLYFALHSYINNLNTLIFCCTKKMCEFYINLINEYLNTLKSLPIPQYI--DMKRKE 681
Query: 776 ILQS--HTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWG 833
+ + + D + L+ G +++ ++ ++L+E + + + +L T+TL+ G
Sbjct: 682 LKEKIYNIDKCIYEKMHKLISNGLCYYYSDISHSVKRLLEVAYKEKTLFLLTCTSTLSVG 741
Query: 834 VNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR-PQYDSY 879
+NL VII + A L+ QM+GRA R + DS+
Sbjct: 742 LNLFVDRVIISSPFV------AQNFLTYTQYKQMIGRAARLKKGDSF 782
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.393 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1300 1196 0.00097 123 3 11 22 0.39 34
39 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 148
No. of states in DFA: 628 (67 KB)
Total size of DFA: 516 KB (2238 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 106.19u 0.13s 106.32t Elapsed: 00:00:07
Total cpu time: 106.25u 0.13s 106.38t Elapsed: 00:00:07
Start: Tue May 21 06:50:47 2013 End: Tue May 21 06:50:54 2013
WARNINGS ISSUED: 1