BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000756
(1300 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VUV9|U520_DROME Putative U5 small nuclear ribonucleoprotein 200 kDa helicase
OS=Drosophila melanogaster GN=CG5931 PE=2 SV=4
Length = 2142
Score = 1490 bits (3857), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 756/1299 (58%), Positives = 962/1299 (74%), Gaps = 38/1299 (2%)
Query: 9 AEAHARFKQYEYRANSSLVLTTD----SRPRDTHEPTGEPESLWGKIDPRSFGDRAFRGR 64
A+A AR QYEY+ANS+LVL D RPR E TGE SL GK+D GDR R +
Sbjct: 2 ADAAARQLQYEYKANSNLVLQADVRLIERPR-RDEATGEVCSLVGKLDGTRMGDRYQRTK 60
Query: 65 PPELEE-KLKKSAKKKKERDPD--ADAAAASEG-------TYQPKTKETRAAYEAMLSVI 114
P + EE K+K+ + + + D + A SEG Y+PKT+ETR YE +LS I
Sbjct: 61 PEKTEERKVKRQKRDEAQYDFERMKGATLLSEGIDEMVGIVYRPKTQETRQTYEVLLSFI 120
Query: 115 QQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLVSIGKLIT 174
Q+ LG QP +I+ GAADEILAVLKND +K+ ++KK+I+ LL + + F LV++GK IT
Sbjct: 121 QEALGDQPRDILCGAADEILAVLKNDRLKDRERKKDIDSLLGAVTDERFALLVNLGKKIT 180
Query: 175 DYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEEDEEEEEDVAEPN 234
D+ A A N E +D+ G+ V+FEE+ EEESD DM E +++ +D E
Sbjct: 181 DFGSDAVNALTAAPNNEEQIDETYGINVQFEES---EEESDNDMYGEIRDDDAQDEGEEA 237
Query: 235 ASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEV 294
+ +++ + + + SL+ DIDAYWLQR +S+ + D Q A +V
Sbjct: 238 RIDHTLHAENLANEEAANNVKKERSLHPLDIDAYWLQRCLSKFYK---DAMVSQSKAADV 294
Query: 295 LKILAEG-DDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEE 353
LKIL + DDR+ EN+L+ L +D F IK L NR V++CT LA AQ ER++I E+
Sbjct: 295 LKILKDAADDRDCENQLVLLLGYDCFDFIKQLKLNRQMVLYCTMLASAQTDSERQRIREK 354
Query: 354 MMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGRDRRGLVDRDA 413
M G LA IL QL ++ +E EAR S G+ A
Sbjct: 355 MRG-NSALAKILRQLDTGKSEDQEEG---------EAR------GSKRGKGDAEDGGAAA 398
Query: 414 DGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPN 473
G G RQLL+L+ +AF QG FMAN++C LP+GS R KGYEE+HVPA+K P D N
Sbjct: 399 AGQVAGVRQLLELEEMAFTQGSHFMANKRCQLPDGSYRKQRKGYEEVHVPALKPVPFDAN 458
Query: 474 EKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTIL 533
E+L + ++P++ QP F+G LNR+QSR+YK+AL S +N+LLCAPTGAGKTNVA+LT++
Sbjct: 459 EELQPVDKLPKYVQPVFEGFKTLNRIQSRLYKAALDSDENMLLCAPTGAGKTNVALLTMM 518
Query: 534 QQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ 593
+++ + N+DG+ N ++KI+YVAPMK+LV E+VGN RL Y++ V EL+GD LTR+
Sbjct: 519 REIGKHINEDGTINAQDFKIIYVAPMKSLVQEMVGNFGRRLACYNLTVSELTGDHQLTRE 578
Query: 594 QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQ 653
QI TQ+IV TPEKWDIITRK G+RT+ LV+L+IIDEIHLLHD RGPVLE++VART+R
Sbjct: 579 QIAATQVIVCTPEKWDIITRKGGERTFVSLVRLVIIDEIHLLHDERGPVLEALVARTIRN 638
Query: 654 IETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713
IETT+E +RLVGLSATLPNY+DVA FLRV +KGLFYFDNSYRPV L QQYIG+ KK L
Sbjct: 639 IETTQEEVRLVGLSATLPNYQDVATFLRVKPDKGLFYFDNSYRPVSLEQQYIGVTEKKAL 698
Query: 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVS 773
+RFQ+MN++ YEK + AG++QVL+FVHSRKET KTARA+RD LE DTLG FLKE S S
Sbjct: 699 KRFQVMNEIVYEKTMEHAGRNQVLVFVHSRKETGKTARAVRDMCLEQDTLGSFLKEGSAS 758
Query: 774 REILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWG 833
E+L++ + VK+ +LK+LLPYGFAIHHAGMTR DR LVEDLF D H+QVLVSTATLAWG
Sbjct: 759 MEVLRTEAEQVKNTELKELLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWG 818
Query: 834 VNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRY 893
VNLPAHTVIIKGTQ+YNPEKG W ELS LD++QMLGRAGRPQYD+ GEGI+IT HSEL++
Sbjct: 819 VNLPAHTVIIKGTQVYNPEKGRWVELSALDVLQMLGRAGRPQYDTKGEGILITNHSELQF 878
Query: 894 YLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGL 953
YLSL+NQQLPIESQF+SKL D LNAEIVLGTVQ+ ++A NW+GYTYLYIRMLRNP LYG+
Sbjct: 879 YLSLLNQQLPIESQFISKLPDMLNAEIVLGTVQHLQDAVNWLGYTYLYIRMLRNPTLYGV 938
Query: 954 APEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTI 1013
+ + +K D L + RADL+HTAA L+R+ L+KYDRK+G+FQVTDLGRIAS+YY++H T+
Sbjct: 939 SHDAIKADPLLEQHRADLLHTAACCLERSGLIKYDRKTGHFQVTDLGRIASHYYLTHETM 998
Query: 1014 STYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAK 1073
TYN+ LK T+ +IEL R+FSLS EF++++VR++EK+EL KL++RVPIP+KES+EE SAK
Sbjct: 999 LTYNQLLKQTLSEIELFRVFSLSSEFRHISVREEEKLELQKLMERVPIPIKESIEEHSAK 1058
Query: 1074 INVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMV 1133
+NVLLQAYISQLKLEG +L SDMVFITQSA RL+RA+FEIVL RGWAQLA+K L L KM+
Sbjct: 1059 VNVLLQAYISQLKLEGFALMSDMVFITQSAARLMRAIFEIVLTRGWAQLADKTLTLCKMI 1118
Query: 1134 TKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFV 1193
+RMW TPLRQF +P+EI KLEKK F W R YDL P ELGELIR PK+G+T+HKFV
Sbjct: 1119 DRRMWQSMTPLRQFKKMPDEIAKKLEKKHFPWGRLYDLEPHELGELIRVPKLGKTIHKFV 1178
Query: 1194 HQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEY 1253
HQFPKL L+ H+QPITR L+VELTITPDF WD+KVHG E FWV++ED D E ILHHE+
Sbjct: 1179 HQFPKLELSTHIQPITRGTLRVELTITPDFQWDEKVHGQSEGFWVLIEDVDSELILHHEF 1238
Query: 1254 FMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLG 1292
F+LK++Y +++H L F VP++EPLPPQYF+R+VSD+W+G
Sbjct: 1239 FLLKQKYSQDEHQLKFFVPVFEPLPPQYFLRIVSDRWIG 1277
Score = 348 bits (892), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 244/850 (28%), Positives = 417/850 (49%), Gaps = 54/850 (6%)
Query: 472 PNEKLIKISEMPEWA--QPAFKGM-----TQLNRVQSRVYKSALSSADNILLCAPTGAGK 524
P +L+ + +P A QP F+ Q N +Q++V+ + +S +N+ + APTG+GK
Sbjct: 1297 PPTELLDLQPLPISALRQPKFESFYSQRFPQFNPIQTQVFNAVYNSDENVFVGAPTGSGK 1356
Query: 525 TNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVREL 584
+A I++ S+ + VY+ +AL V + ++ D+KV +L
Sbjct: 1357 MTIAEFAIMRLFT---------TQSDARCVYLVSEEALADLVFADWHSKFGSLDIKVVKL 1407
Query: 585 SGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLE 644
+G+ + I + Q+++TT +KWD+++R+ R QLV L I+DE+ L+ GPVLE
Sbjct: 1408 TGETGTDLKLIAKGQLVITTADKWDVLSRRWKQRKNVQLVNLFIVDELQLVGGEEGPVLE 1467
Query: 645 SIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQY 704
+ +R ++ IR+V LSA+L + DVA +L N F F S RP+PL
Sbjct: 1468 IVCSRMRYISSQIEKQIRIVALSASLTDARDVAQWLGCN-PNATFNFHPSVRPIPLELHI 1526
Query: 705 IGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLG 764
G V R M+ Y ++ + V++FV SRK+ TA + A +
Sbjct: 1527 QGYNVTHNATRIATMSKPVYNAILKYSAHKPVIVFVSSRKQARLTAIDVLTYAASDLQPN 1586
Query: 765 RFLK-EDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQV 823
RF E+ + L+ TD LK+ L G A H G++ D +LVE LF G VQV
Sbjct: 1587 RFFHAEEEDIKPFLERMTD----KTLKETLAQGVAYLHEGLSASDHRLVEQLFDSGAVQV 1642
Query: 824 LVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883
V + L WG+++ AH VII TQ YN + ++ + D++QM+GRA RP D+ + +
Sbjct: 1643 AVISRDLCWGMSISAHLVIIMDTQFYNGKNHSYEDYPITDVLQMIGRANRPNEDADAKCV 1702
Query: 884 IITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIR 943
++ S+ ++ +N+ LPIES ++ D NAE+V T++N ++A +++ +T+LY R
Sbjct: 1703 LMCQSSKKDFFKKFINEPLPIESHLDHRMHDHFNAEVVTKTIENKQDAVDYLTWTFLYRR 1762
Query: 944 MLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIA 1003
+ +NP Y L + L + ++LV + L+++ + + + +LG IA
Sbjct: 1763 LTQNPNYYNLQGVTHRH---LSDHLSELVENTLSDLEQSKCISVEDDMDTLPL-NLGMIA 1818
Query: 1004 SYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPV 1063
+YYYI++ TI ++ L L + S + E++ V VR E+ L L R+P +
Sbjct: 1819 AYYYINYTTIELFSLSLNSKTKVRGLLEIISSAAEYEDVVVRHHEEQVLRTLSQRLPNKL 1878
Query: 1064 K------ESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKR 1117
+P K N+LLQA++S+L+L G L D I A RL++A +++
Sbjct: 1879 TGPNETAPKFNDPHIKTNLLLQAHLSRLQL-GPELQGDTEQILSKAIRLIQACVDVLSSN 1937
Query: 1118 GWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELG 1177
GW A A+ L++MVT+ MWS + L+Q EI+ + +K E +D+ E
Sbjct: 1938 GWLSPAVAAMELAQMVTQAMWSKDSYLKQLPHFSPEIVKRCTEKKI--ETVFDIMELEDE 1995
Query: 1178 ELIRFPKMG----RTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHG-Y 1232
+ R ++ + +F +++P + L V R + + +D+V G
Sbjct: 1996 DRTRLLQLSDLQMADVARFCNRYPNIELNYEVVDKDRINSGSTVNVVVQLEREDEVTGPV 2055
Query: 1233 VEPF---------WVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFI 1283
+ PF WV++ D +L + L+++ L+F P P Y +
Sbjct: 2056 IAPFFPQKREEGWWVVIGDPKTNSLLSIKRLTLQQK---AKVKLDFVAP--SPGKHDYTL 2110
Query: 1284 RVVSDKWLGV 1293
+SD +LG
Sbjct: 2111 YYMSDSYLGC 2120
>sp|O75643|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens
GN=SNRNP200 PE=1 SV=2
Length = 2136
Score = 1453 bits (3761), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 742/1304 (56%), Positives = 962/1304 (73%), Gaps = 46/1304 (3%)
Query: 9 AEAHARFKQYEYRANSSLVLTTDSRPRDT---HEPTGEPESLWGKIDPRSFGDRAFRGRP 65
A+ AR QYEY+ANS+LVL D D EPTGE SL GK++ GD+A R +P
Sbjct: 2 ADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTKP 61
Query: 66 PELEEKLKKSAKKKKERDPDADAAAA----SEGT-------YQPKTKETRAAYEAMLSVI 114
+++E+ + +K+ E D + SEG Y+PKTKETR YE +LS I
Sbjct: 62 -QMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI 120
Query: 115 QQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLVSIGKLIT 174
Q LG QP +I+ GAADE+LAVLKN+ +++ +++KEI+ LL + + LV++GK IT
Sbjct: 121 QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKIT 180
Query: 175 DYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEE----DEEEEEDV 230
DY GD + N +++D+ GV V+FE ++++ +E V+EE D E +E V
Sbjct: 181 DY--GGD---KEIQNMDDNIDETYGVNVQFESDEEEGDEDVYGEVREEASDDDMEGDEAV 235
Query: 231 AEPNASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDPQQCQKL 290
S + G + +++ L+ +DIDA+WLQR++S+ +D I QK
Sbjct: 236 VRCTLSANLVASGELM-------SSKKKDLHPRDIDAFWLQRQLSRFYDDAI---VSQKK 285
Query: 291 AEEVLKIL-AEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKK 349
A+EVL+IL DDRE EN+L+ L F+ F IK L ++R+ +++CT LA AQ + E+++
Sbjct: 286 ADEVLEILKTASDDRECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKER 345
Query: 350 IEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGRDRRGLV 409
I +M P+L+ L QLH T E IREE R + S D +
Sbjct: 346 IMGKMEA-DPELSKFLYQLHETEK---------EDLIREERSRRERVRQSRMDTDLETM- 394
Query: 410 DRDADGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKP 469
D D G L RQ+LDL+ L F QG FMAN++C LP+GS R KGYEE+HVPA+K KP
Sbjct: 395 DLDQGGEALAPRQVLDLEDLVFTQGSHFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKP 454
Query: 470 LDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAV 529
E+L+ + ++P++AQ F+G LNR+QS++Y++AL + +N+LLCAPTGAGKTNVA+
Sbjct: 455 FGSEEQLLPVEKLPKYAQAGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVAL 514
Query: 530 LTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQT 589
+ +L+++ + N DG+ N ++KI+Y+APM++LV E+VG+ RL Y + V EL+GD
Sbjct: 515 MCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQ 574
Query: 590 LTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVAR 649
L +++I TQIIV TPEKWDIITRK G+RTYTQLV+L+I+DEIHLLHD+RGPVLE++VAR
Sbjct: 575 LCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVAR 634
Query: 650 TVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQV 709
+R IE T+E +RL+GLSATLPNYEDVA FLRV+ KGLFYFDNS+RPVPL Q Y+GI
Sbjct: 635 AIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITE 694
Query: 710 KKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKE 769
KK ++RFQ+MN++ YEK++ AGK+QVL+FVHSRKET KTARAIRD LE DTLG FL+E
Sbjct: 695 KKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLRE 754
Query: 770 DSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTAT 829
S S E+L++ + K+ +LKDLLPYGFAIHHAGMTR DR LVEDLF D H+QVLVSTAT
Sbjct: 755 GSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTAT 814
Query: 830 LAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS 889
LAWGVNLPAHTVIIKGTQ+Y+PEKG WTEL LDI+QMLGRAGRPQYD+ GEGI+IT H
Sbjct: 815 LAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHG 874
Query: 890 ELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPA 949
EL+YYLSL+NQQLPIESQ VSKL D LNAEIVLG VQNAK+A NW+GY YLYIRMLR+P
Sbjct: 875 ELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPT 934
Query: 950 LYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYIS 1009
LYG++ + LK D L +RR DLVHTAA +LD+NNLVKYD+K+G FQVT+LGRIAS+YYI+
Sbjct: 935 LYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYIT 994
Query: 1010 HGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEE 1069
+ T+ TYN+ LKPT+ +IEL R+FSLS EFK +TVR++EK+EL KLL+RVPIPVKES+EE
Sbjct: 995 NDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKLELQKLLERVPIPVKESIEE 1054
Query: 1070 PSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNL 1129
PSAKINVLLQA+ISQLKLEG +L +DMV++TQSAGRL+RA+FEIVL RGWAQL +K LNL
Sbjct: 1055 PSAKINVLLQAFISQLKLEGFALMADMVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNL 1114
Query: 1130 SKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTL 1189
KM+ KRMW PLRQF +P E++ K+EKK+F +ER YDL+ E+GELIR PKMG+T+
Sbjct: 1115 CKMIDKRMWQSMCPLRQFRKLPEEVVKKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTI 1174
Query: 1190 HKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYIL 1249
HK+VH FPKL L+ H+QPITR+ LKVELTITPDF WD+KVHG E FW++VED D E IL
Sbjct: 1175 HKYVHLFPKLELSVHLQPITRSTLKVELTITPDFQWDEKVHGSSEAFWILVEDVDSEVIL 1234
Query: 1250 HHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGV 1293
HHEYF+LK +Y +++H + F VP++EPLPPQYFIRVVSD+WL
Sbjct: 1235 HHEYFLLKAKYAQDEHLITFFVPVFEPLPPQYFIRVVSDRWLSC 1278
Score = 338 bits (866), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 229/748 (30%), Positives = 388/748 (51%), Gaps = 35/748 (4%)
Query: 472 PNEKLIKISEMPEWA--QPAFKGMTQ-----LNRVQSRVYKSALSSADNILLCAPTGAGK 524
P +L+ + +P A AF+ + Q N +Q++V+ + +S DN+ + APTG+GK
Sbjct: 1297 PPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGK 1356
Query: 525 TNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVRE 583
T A IL+ L S + VY+ PM+AL +V + + Q + KV
Sbjct: 1357 TICAEFAILRML---------LQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVL 1407
Query: 584 LSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVL 643
L+G+ + + + + II++TPEKWDI++R+ R Q + L ++DE+HL+ GPVL
Sbjct: 1408 LTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVL 1467
Query: 644 ESIVARTVRQIETTKEH-IRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQ 702
E I +R +R I + E IR+V LS++L N +DVA +L + F F + RPVPL
Sbjct: 1468 EVICSR-MRYISSQIERPIRIVALSSSLSNAKDVAHWLGCS-ATSTFNFHPNVRPVPLEL 1525
Query: 703 QYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDT 762
G + R M Y + + K V++FV SRK+T TA I T +
Sbjct: 1526 HIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQ 1585
Query: 763 LGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQ 822
RFL + + L + + + + LK+ L G H G++ +R+LVE LF G +Q
Sbjct: 1586 RQRFLH---CTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQ 1642
Query: 823 VLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEG 882
V+V++ +L WG+N+ AH VII TQ YN + A+ + D++QM+G A RP D G
Sbjct: 1643 VVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRC 1702
Query: 883 IIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYI 942
+I+ S+ ++ + + LP+ES + D NAEIV T++N ++A +++ +T+LY
Sbjct: 1703 VIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYR 1762
Query: 943 RMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRI 1002
RM +NP Y L + L + ++LV + L+++ + + + + +LG I
Sbjct: 1763 RMTQNPNYYNLQGISHRH---LSDHLSELVEQTLSDLEQSKCISIEDEMDVAPL-NLGMI 1818
Query: 1003 ASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIP 1062
A+YYYI++ TI ++ L L + S + E++ + +R E L +L +VP
Sbjct: 1819 AAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHK 1878
Query: 1063 VKE-SLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQ 1121
+ +P K N+LLQA++S+++L L SD I A RL++A +++ GW
Sbjct: 1879 LNNPKFNDPHVKTNLLLQAHLSRMQLSA-ELQSDTEEILSKAIRLIQACVDVLSSNGWLS 1937
Query: 1122 LAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIR 1181
A A+ L++MVT+ MWS + L+Q +E + + K E +D+ E E
Sbjct: 1938 PALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDK--GVESVFDIMEMEDEERNA 1995
Query: 1182 FPKMGRT----LHKFVHQFPKLILAAHV 1205
++ + + +F +++P + L+ V
Sbjct: 1996 LLQLTDSQIADVARFCNRYPNIELSYEV 2023
>sp|Q9U2G0|U520_CAEEL Putative U5 small nuclear ribonucleoprotein 200 kDa helicase
OS=Caenorhabditis elegans GN=Y46G5A.4 PE=3 SV=1
Length = 2145
Score = 1339 bits (3466), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 677/1299 (52%), Positives = 913/1299 (70%), Gaps = 45/1299 (3%)
Query: 9 AEAHARFKQYEYRANSSLVLTTD---SRPRDTHEPTGEPESLWGK-IDPRSFGDRAFRGR 64
A+ AR +QYEYR NS+LVL+ D + R EPTGE + K + GDRA +G+
Sbjct: 2 ADELARIQQYEYRQNSNLVLSVDYNLTDRRGREEPTGEVLPITDKEMRKMKMGDRAIKGK 61
Query: 65 PP-----ELEEKLKKSAKKKKERDPDADAAAASEGTYQPKTKETRAAYEAMLSVIQQQLG 119
P + +K ++ R+ D G Y+P+T+ET+ YE +LS I LG
Sbjct: 62 APVQDQKKKRKKKDDEKAQQFGRNVLVDNNELM-GAYKPRTQETKQTYEVILSFILDALG 120
Query: 120 GQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLVSIGKLITDYQDA 179
P ++ GAADE+L LKND ++ +KKKE+E LL P+ + L+++ K I+D+
Sbjct: 121 DVPREVLCGAADEVLLTLKNDKFRDKEKKKEVEALLGPLTDDRIAVLINLSKKISDFS-- 178
Query: 180 GDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEEDEEEEEDV-----AEPN 234
+ G D+ ++ GV V+F D DEEE D MV E + EE+ + +
Sbjct: 179 --IEEENKPEGDGDIYENEGVNVQF---DSDEEEDDGGMVNEIKGDSEEESEEEEGVDTD 233
Query: 235 ASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEV 294
+ ++ G + +D++ G+ L+ +DIDA+W+QR +++ F DP Q+ EV
Sbjct: 234 YTATLKGDGHLTEDEQKA---RGI-LHPRDIDAHWIQRSLAKYFK---DPLIAQQKQTEV 286
Query: 295 LKILAEG-DDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEE 353
+ IL DDR+ EN+L+ L FD+F IK L +NRL +++CT L R +++ER +IE++
Sbjct: 287 IGILKNAADDRDAENQLVLLLGFDQFEFIKCLRQNRLMILYCT-LLRQANEKERLQIEDD 345
Query: 354 MMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGRDRRGLVDRDA 413
M P+L IL L T + + +EKS R+ + K +A++ + +
Sbjct: 346 MRS-RPELHPILALLQETDEGSVVQ---VEKSKRDAEKSKKAATAAN---------EAIS 392
Query: 414 DGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPN 473
G W R++LDL+ L F QG M+N++C+LP+GS R K YEEIHVPA+K +P
Sbjct: 393 AGQWQAGRKMLDLNDLTFSQGSHLMSNKRCELPDGSYRRQKKSYEEIHVPALKPRPFAEG 452
Query: 474 EKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTIL 533
EKL+ +SE+P+WAQPAF G LNR+QSR+ SAL S +++LLCAPTGAGKTNVA+LT+L
Sbjct: 453 EKLVSVSELPKWAQPAFDGYKSLNRIQSRLCDSALRSKEHLLLCAPTGAGKTNVALLTML 512
Query: 534 QQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ 593
Q++ + +DGS +KIVY+APMK+LV E+VG+ S RL + + V E++GD ++++
Sbjct: 513 QEIGNHLAEDGSVKLDEFKIVYIAPMKSLVQEMVGSFSKRLAPFGITVGEMTGDAQMSKE 572
Query: 594 QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQ 653
Q TQ+IV TPEK+D++TRK G+R Y Q+V+LLIIDEIHLLHD+RGPVLESIV RT+RQ
Sbjct: 573 QFMATQVIVCTPEKYDVVTRKGGERAYNQMVRLLIIDEIHLLHDDRGPVLESIVVRTIRQ 632
Query: 654 IETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713
+E + RLVGLSATLPNY+DVA FLRV E L +FDNSYRPVPL QQYIG+ KK L
Sbjct: 633 MEQNHDECRLVGLSATLPNYQDVATFLRVKPEH-LHFFDNSYRPVPLEQQYIGVTEKKAL 691
Query: 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVS 773
+RFQ MN++ Y+K++ AGK QVL+FVHSRKETAKTA+AIRD LE DTL F++E S S
Sbjct: 692 KRFQAMNEVVYDKIMEHAGKSQVLVFVHSRKETAKTAKAIRDACLEKDTLSAFMREGSAS 751
Query: 774 REILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWG 833
EIL++ + K+ DLKDLLPYGFAIHHAGM R DR LVEDLF D H+QVL STATLAWG
Sbjct: 752 TEILRTEAEQAKNLDLKDLLPYGFAIHHAGMNRVDRTLVEDLFADRHIQVLFSTATLAWG 811
Query: 834 VNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRY 893
VNLPAHTVIIKGTQIYNPEKG WTEL LDIMQMLGRAGRPQYD GEGI+IT HSEL+Y
Sbjct: 812 VNLPAHTVIIKGTQIYNPEKGRWTELGALDIMQMLGRAGRPQYDDRGEGILITNHSELQY 871
Query: 894 YLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGL 953
YLSLMNQQLP+ESQ VS+L D LNAE+VLGTV + EA NW+GYT+L++RML+NP LYG+
Sbjct: 872 YLSLMNQQLPVESQMVSRLTDMLNAEVVLGTVSSVSEATNWLGYTFLFVRMLKNPTLYGI 931
Query: 954 APEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTI 1013
E + D L +RRADL+HTA +LD+ L+KYD++SG Q T+LGRIAS++Y ++ ++
Sbjct: 932 THEQARADPLLEQRRADLIHTACVLLDKAGLIKYDKRSGIIQATELGRIASHFYCTYESM 991
Query: 1014 STYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAK 1073
TYN+ L T DI+L R+FS+S EFK ++VR +EK+EL K+ + PIP+KE+L+E SAK
Sbjct: 992 QTYNKLLVETCSDIDLFRIFSMSSEFKLLSVRDEEKLELQKMAEHAPIPIKENLDEASAK 1051
Query: 1074 INVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMV 1133
NVLLQAYISQLKLEG +L +DMVF+ QSAGRL RALFEIVL RGWA LA+K L L KMV
Sbjct: 1052 TNVLLQAYISQLKLEGFALQADMVFVAQSAGRLFRALFEIVLWRGWAGLAQKVLTLCKMV 1111
Query: 1134 TKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFV 1193
T+R W PL QF IP+E++ ++KK+++++R YDL +LG+LI+ PKMG+ L KF+
Sbjct: 1112 TQRQWGSLNPLHQFKKIPSEVVRSIDKKNYSFDRLYDLDQHQLGDLIKMPKMGKPLFKFI 1171
Query: 1194 HQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEY 1253
QFPKL + +QPITRT +++ELTITPDF WD+KVHG E FW+ +ED DGE ILHHE+
Sbjct: 1172 RQFPKLEMTTLIQPITRTTMRIELTITPDFKWDEKVHGSAEGFWIFIEDTDGEKILHHEF 1231
Query: 1254 FMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLG 1292
F+LK+++ ++H + VP+++P+PP Y++R+VSD+W+G
Sbjct: 1232 FLLKQKFCSDEHVVKMIVPMFDPMPPLYYVRIVSDRWIG 1270
Score = 316 bits (809), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 226/829 (27%), Positives = 402/829 (48%), Gaps = 51/829 (6%)
Query: 489 AFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNH 548
A G N +Q++V+++ S +N+++CAP G+GKT +A L +L+ N
Sbjct: 1315 AESGFKVFNPIQTQVFRTVFESNENVIVCAPNGSGKTAIAELAVLRHFE---------NT 1365
Query: 549 SNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVRELSGDQTLTRQQIEETQIIVTTPEK 607
K VY+ PM+ + +V + RL+ + L+G+QT+ + + Q+I++TPE+
Sbjct: 1366 PEAKAVYITPMEDMATKVYADWKRRLEPAIGHTIVLLTGEQTMDLKLAQRGQLIISTPER 1425
Query: 608 WDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEH-IRLVGL 666
WD I+R+ R Q VKL I D++H++ + G V E + +RT R I + E +R+V L
Sbjct: 1426 WDNISRRWKQRKSVQNVKLFIADDLHMIGASNGAVFEVVCSRT-RYISSQLESAVRVVAL 1484
Query: 667 SATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEK 726
S++L N D+ ++L + F F S RPVPL + + RF M Y+
Sbjct: 1485 SSSLTNARDLGMWLGCS-ASATFNFMPSTRPVPLDLEIKSFNLSHNASRFAAMERPVYQA 1543
Query: 727 VVAVAGKHQ---VLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDM 783
+ AGK + L+FV R++T A A+ AL + RFL+ + + Q+
Sbjct: 1544 ICRHAGKLEPKPALVFVPVRRQTRPVAVALLTMALADGAPKRFLRL-AEHDDTFQALLAD 1602
Query: 784 VKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVII 843
++ L++ + G H G D +V+ LF +QV V + + + + A+ V++
Sbjct: 1603 IEDESLRESVSCGVGFLHEGTAPKDVHIVQQLFESNAIQVCVVPRGMCYQIEMSAYLVVV 1662
Query: 844 KGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLP 903
TQ YN + + + D++ M+G A RP DS + +++ S+ YY + LP
Sbjct: 1663 MDTQFYNGKYHVYEDYPIADMLHMVGLANRPILDSDAKCVVMCQTSKRAYYKKFLCDPLP 1722
Query: 904 IESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDIT 963
+ES L D NAEIV T++N ++A +++ +T LY RM +NP Y L +
Sbjct: 1723 VESHLDHCLHDHFNAEIVTKTIENKQDAIDYLTWTLLYRRMTQNPNYYNLQGTTHRH--- 1779
Query: 964 LGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPT 1023
L + ++LV L+ + + + + +LG IASYYYIS+ TI ++ LK
Sbjct: 1780 LSDALSELVELTLKDLENSKCIAVKDEMDTVSL-NLGMIASYYYISYQTIELFSMSLKEK 1838
Query: 1024 MGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVK-ESLEEPSAKINVLLQAYI 1082
L + S S EF V +R E + L +L +R+P +K + +P K+N+L+ A++
Sbjct: 1839 TKTRALIEIISASSEFGNVPMRHKEDVILRQLAERLPGQLKNQKFTDPHVKVNLLIHAHL 1898
Query: 1083 SQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQT 1142
S++KL L D I A RL++A +++ GW A A+ LS+M+T+ M+S +
Sbjct: 1899 SRVKLTA-ELNKDTELIVLRACRLVQACVDVLSSNGWLSPAIHAMELSQMLTQAMYSNEP 1957
Query: 1143 PLRQFNGIPNEILMKLEKKDF-AWERYYDLSPQELGELIRFPKMGRT-LHKFVHQFPKLI 1200
L+Q +L + + K+ + +L + ++++ + +F + +P +
Sbjct: 1958 YLKQLPHCSAALLERAKAKEVTSVFELLELENDDRSDILQMEGAELADVARFCNHYPSIE 2017
Query: 1201 LAAHVQPITRT-----VLKVEL------------TITPDFLWDDKVHGYVEPFWVIVEDN 1243
+A ++ T +L V L + P F K G+ W+++ D+
Sbjct: 2018 VATELENDVVTSNDNLMLAVSLERDNDIDGLAPPVVAPLFPQKRKEEGW----WLVIGDS 2073
Query: 1244 DGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLG 1292
+ +L +K+ I E S+ P ++ + +SD +LG
Sbjct: 2074 ESNALL-----TIKRLVINEKSSVQLDFAAPRPGHHKFKLFFISDSYLG 2117
>sp|Q55CI8|HELCL_DICDI Activating signal cointegrator 1 complex subunit 3-like
OS=Dictyostelium discoideum GN=ascc3l PE=3 SV=1
Length = 2237
Score = 1277 bits (3305), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 675/1367 (49%), Positives = 920/1367 (67%), Gaps = 104/1367 (7%)
Query: 9 AEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAFRGRPPEL 68
+E AR KQY Y+ NS+LV ++ + EP GEPE+LWG++ GDR +P EL
Sbjct: 2 SEELARSKQYGYKENSNLVFYSERNRSELKEPKGEPETLWGRLRGE-MGDRVNYSKPLEL 60
Query: 69 EEKLKK---------------------SAKKKKERDP------------------DADAA 89
EK++ + KK K ++P D
Sbjct: 61 LEKMQNLKRKTIEKEGGDVNSSNDTYSTTKKVKNQNPLEKKSTNRKSNGNNNNEKPIDIL 120
Query: 90 AASE---GTYQPKTKETRAAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPD 146
+A+E G Y+PKTKETR YE +L+ IQ+ +G QP +V GA DEIL++LK+D ++ P+
Sbjct: 121 SATESFQGLYKPKTKETRITYETLLTFIQRYVGDQPTEVVKGALDEILSILKDDTIRAPE 180
Query: 147 KKKEIEKLLNPIPNHVFDQLVSIGKLITDYQD---AGDAAGNDAANGGEDLDDDMGVAVE 203
KK EI KLL + + F +L +GK ITD++D A + LDD+ GVAV
Sbjct: 181 KKIEISKLLKGLNDVSFAELTQLGKQITDFKDSELAKQQQQQQQQQSMDSLDDEQGVAVI 240
Query: 204 FEENDDDEEESDLDM----------------------VQEEDEEEEEDVAEPNASGAMQM 241
+E +++E SD ++ + +D E + N Q
Sbjct: 241 IDEEEEEENLSDFEIRDDDDDDDDVDNNEVDDNNNNDSEAQDSEIQTKDENNNDDDENQK 300
Query: 242 ----------GGGIDDDDESGDANEGMSL-NVQDIDAYWLQRKISQAFDQQIDPQQCQKL 290
D + D N L + +ID++W+QRKIS+ F++ D ++L
Sbjct: 301 IKENNNNNNKSQKPDTKNTKDDKNNNSKLISPNEIDSFWIQRKISE-FER--DHDLSKQL 357
Query: 291 AEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKI 350
AE+ L IL + + R E +L+ DK +K ++ N+ +++CT LA+A++ +ERKKI
Sbjct: 358 AEKTLNILRQPNVRRCEQQLVDLFTIDKLDFLKLIINNKQTILYCTLLAKAENDQERKKI 417
Query: 351 EEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGRDRRGLVD 410
E+EM P +IL++L TA +K +EK+ E+ + KD + ++ +
Sbjct: 418 EDEMSS-NPVTLSILNRLKGNEVTAATTEKTIEKT---ESNK-KDVEMKQQQQQQQDEIK 472
Query: 411 RDADGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPL 470
+ ++LL+L+ L+FQQG M N++ P+GS+R KG+EEIHVPA + P
Sbjct: 473 K--------PKKLLNLEELSFQQGSHLMTNKEFKFPKGSKREQYKGFEEIHVPARANPPF 524
Query: 471 DPNEKLIKISEMPEWAQPAFK--GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVA 528
+PNE+LI I E+PEW++ F+ G+ LNRVQS+++ A + +N+LL APT +GKTNVA
Sbjct: 525 NPNERLISIEELPEWSRLPFEESGVKSLNRVQSKLFDCAFKTDNNLLLSAPTSSGKTNVA 584
Query: 529 VLTILQQLALNRN-DDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGD 587
+LTIL ++ NR+ D G +KIVY+APMK+LV E+VGN S RL+ Y + V EL+GD
Sbjct: 585 MLTILHEIGKNRDRDSGKIRLDAFKIVYIAPMKSLVQEMVGNFSKRLKSYGIVVNELTGD 644
Query: 588 QTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIV 647
Q+LT +QI ETQIIVTTPEKWDIITRKSGDR YTQLVKL+IIDEIHLLHD RGPVLE IV
Sbjct: 645 QSLTNKQISETQIIVTTPEKWDIITRKSGDRAYTQLVKLIIIDEIHLLHDERGPVLECIV 704
Query: 648 ARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGI 707
ART+R IE+T++ +RLVGLSATLPNYEDVA FLRV + G+FYFD+SYRP+PL QQYIGI
Sbjct: 705 ARTLRMIESTQQMVRLVGLSATLPNYEDVATFLRVEPD-GVFYFDSSYRPIPLEQQYIGI 763
Query: 708 QVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFL 767
+ +++ Q ND+ + KV G HQ+LIFVHSR+ETAKT + +RD A+E+ ++ R++
Sbjct: 764 S-DRGIKQLQRCNDITFTKVSERVGDHQILIFVHSRRETAKTGKDLRDRAVEDQSIDRYI 822
Query: 768 KEDSVSREILQ-SHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVS 826
+ D SREIL+ + + +++ +LKDLLPYG IHHAG++R DR LVEDLFGD +QVL+S
Sbjct: 823 R-DPASREILRATASKQIQNAELKDLLPYGIGIHHAGLSRSDRSLVEDLFGDNRIQVLIS 881
Query: 827 TATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT 886
TATLAWGVNLPAHTVIIKGTQIYNPEKG W ELSPLD+ QMLGRAGRP +D GEGIIIT
Sbjct: 882 TATLAWGVNLPAHTVIIKGTQIYNPEKG-WCELSPLDVTQMLGRAGRPPFDKEGEGIIIT 940
Query: 887 GHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLR 946
EL++YLSL+N QL IESQF+S++AD LNAEIVLG++Q ++A NW+GYTYLYI M+R
Sbjct: 941 SQHELQFYLSLLNTQLSIESQFISRIADNLNAEIVLGSIQTVRDAVNWLGYTYLYICMIR 1000
Query: 947 NPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYY 1006
NP LY ++ + ++D L +RR DLVH+AATIL++N+L+KYDRKSG Q T+LG++AS+Y
Sbjct: 1001 NPPLYEISYDDFEKDPLLEQRRLDLVHSAATILEKNSLIKYDRKSGKLQSTELGKVASHY 1060
Query: 1007 YISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKES 1066
YI++ ++S Y EHLKP+M DIEL R+FSLS EFK V VR+ EK EL KLL+RVPIP+KE+
Sbjct: 1061 YITNSSMSIYQEHLKPSMSDIELLRVFSLSSEFKNVVVREGEKFELEKLLERVPIPIKEN 1120
Query: 1067 LEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKA 1126
+EEPS+KINVLLQ YIS LKL+G +L DM +I QSA R+ RALFEIVLK+GWAQLA+K
Sbjct: 1121 IEEPSSKINVLLQTYISNLKLDGFALVVDMFYIAQSASRITRALFEIVLKKGWAQLAKKI 1180
Query: 1127 LNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMG 1186
LNL+KM+ +MWS Q+PLRQF+ I ++L +LE++ E Y+ + Q+LG I+ P G
Sbjct: 1181 LNLAKMIDSKMWSSQSPLRQFHKISPKVLNQLERRGIPIEDLYEYNSQQLGNAIQNPSEG 1240
Query: 1187 RTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGE 1246
+ L +H FPKL L AHVQPI +L+VEL+ITPDF +D++ H +W+IVED DGE
Sbjct: 1241 KQLFDLIHNFPKLDLTAHVQPILHGLLRVELSITPDFQYDERYHNNSIGWWIIVEDVDGE 1300
Query: 1247 YILHHEYFMLKKQYIE-EDHSLNFTVPIYEPLPPQYFIRVVSDKWLG 1292
IL+ EYF LKK+ + ED ++FTVP+ +PLPPQY++RV+SD W+G
Sbjct: 1301 RILYFEYFSLKKKMVNGEDQLVSFTVPLSQPLPPQYYVRVISDHWIG 1347
Score = 305 bits (782), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 212/681 (31%), Positives = 355/681 (52%), Gaps = 43/681 (6%)
Query: 486 AQPAFK-GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDG 544
A+ FK + N +Q++V+ S DN + APT +GKT A + +++ N
Sbjct: 1387 AESIFKPTFSIFNAIQTQVFNCMYQSNDNAFISAPTNSGKTVCAEIALIRCFKQN----- 1441
Query: 545 SFNHSNYKIVYVAPMKALVAEVVGNLSNRLQM---YDVKVRELSGDQTLTRQQIEETQII 601
K+VY+APM+ L + + + SN+ + + + V +L+GD + ++ + II
Sbjct: 1442 ----PKAKVVYLAPMQDLASVRLKDWSNKFGVKSPFGLVVSDLTGDAVTDNKILDRSNII 1497
Query: 602 VTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIET-TKEH 660
VT EKWDI++RK R Q + LLI+DE+HL+ GP +E +V+R +R I T T
Sbjct: 1498 VTNCEKWDILSRKWKQRKALQSINLLIVDELHLIGGEYGPTMEIVVSR-MRYISTQTGNA 1556
Query: 661 IRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMN 720
+R++ LS+++ N D+ L++ + + F + RP+P+ Q G + R M
Sbjct: 1557 LRVIALSSSIANARDLVLWIGAT-PQTCYNFHPNVRPIPVEYQIQGFEFPHFNARMLAMT 1615
Query: 721 D-LCYEKVVAVAGKHQVLIFVHSRKET-AKTARAIRDTALENDTLGR-FLKEDSVSREIL 777
YE VA Q ++FV +RK + + A I + + DTL + +L +L
Sbjct: 1616 KPTVYE--VAKNKNQQSIVFVPTRKLSRSLAADIIANVSSFEDTLTKPYL---VCEEHVL 1670
Query: 778 QSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGV-NL 836
+ + V S LK L G A +H G+T +R++VE LF G ++VL++T ++AW + N+
Sbjct: 1671 TPYLEDVDSFALKQSLQMGVAFYHDGLTERERRVVEILFRSGSIRVLIATHSVAWLLDNV 1730
Query: 837 PAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGII--------ITGH 888
A V+I GTQ+Y + + + DI+QM+GRAG+ + G G+I + H
Sbjct: 1731 FAQLVVIMGTQLYQGKDIRYIDYPINDILQMIGRAGKQE----GGGVISNKVAKVLLLCH 1786
Query: 889 SELR-YYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRN 947
+ + YY +N+ LP+ES L DQ N+EIV T+ ++A +++ +T+LY R+ +N
Sbjct: 1787 APKKEYYKMFLNEPLPVESHLDHCLHDQFNSEIVTKTITKKQDALDYLTWTFLYRRLNQN 1846
Query: 948 PALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYY 1007
P Y L+ + L E ++LV L+++N + +LG IASYYY
Sbjct: 1847 PNYYNLSG---VSHLHLSEHLSELVENTLVELEQSNCITIQDDQDKVSPLNLGIIASYYY 1903
Query: 1008 ISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPV-KES 1066
+ + TI + LK T + + S + EF + +R E L KL +P + K +
Sbjct: 1904 LKYQTIELFGSSLKSTTRRRGIMDIISNAPEFNSLPIRHREDQILMKLASHLPQKIDKPN 1963
Query: 1067 LEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKA 1126
+E S K+NVLLQ + S+ + L D FI ++A RLL+A+ +++ W Q A A
Sbjct: 1964 YQEISTKVNVLLQCHFSRESISA-DLYQDQKFILENATRLLQAIVDVISSNSWLQPAIAA 2022
Query: 1127 LNLSKMVTKRMWSVQTPLRQF 1147
+ LS+M+T+ MW + +Q
Sbjct: 2023 MELSQMITQAMWDSDSVFKQL 2043
>sp|Q9UT24|BRR2_SCHPO Pre-mRNA-splicing factor brr2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=brr2 PE=1 SV=1
Length = 2176
Score = 1246 bits (3223), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 652/1325 (49%), Positives = 882/1325 (66%), Gaps = 71/1325 (5%)
Query: 17 QYEYRANSSLVLTTDSR--PRDTHEPTGEPESLWGKIDPRSFGDRAFRGRPPELEEKLKK 74
QY Y A S+LV D R R EPTGEPESL ++ G RA +P L +L +
Sbjct: 29 QYSYSAMSNLVTQADRRFVSRRDAEPTGEPESLVNRVSIADMGSRARIEKPSTLPLELTQ 88
Query: 75 SAKKKKERDPDADAAAASEGT-----------------------YQPKTKETRAAYEAML 111
++ R P DA + G Y P T ETR Y+ +L
Sbjct: 89 EVQEV--RLPRKDAESLEIGIRQPEREKRSSAILKYFDSFEILKYNPLTDETREVYDYIL 146
Query: 112 SVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNP-IPNHVFDQLVSIG 170
S IQQ LG Q I+ AAD I+ +LK+ ++ +KK+IE++L+ +P F QLV++G
Sbjct: 147 SFIQQYLGDQSPEILRSAADLIIELLKDSSLDEQGRKKQIEEVLSTELPQDRFSQLVNLG 206
Query: 171 KLITDYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQE--------- 221
+TDY + N+ ++ GV V F E D++EE + E
Sbjct: 207 NRLTDYTVEQEEELNEEGV------NESGVPVLFNEADEEEEAVEAMEEDEVAEDEDVVL 260
Query: 222 ----EDEEEEEDVAEPNASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQA 277
EEE++++ P+ ++ E +++ ++IDA+WLQR+I++
Sbjct: 261 ETSISQEEEKKNIENPDTEVTFISA-------DTKKVTEIPTVHPREIDAFWLQREIAKY 313
Query: 278 FDQQIDPQQCQKLAEEVLKIL-AEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCT 336
F D CQ+ + + L A+ D E+EN+L+ ++ F L++ L +NR +V CT
Sbjct: 314 F---ADAVVCQEKTNQAFEALSADYDLGELENELMSIFDYEHFYLVQLLTKNRWTIVSCT 370
Query: 337 RLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKN-LEKSIREEARRLKD 395
L RA EER +EE++ G + IL+ L T + N L ++ E+A
Sbjct: 371 MLKRAATDEERLGVEEQIRAAG--RSWILEALRPGAITIPDDGLNELNNNVVEKAEPAPV 428
Query: 396 ESASDGGRDRRGLVDRDADGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNK 455
+ + + + +DL+ F +G M+N+ LPEGS R T K
Sbjct: 429 SEIP---------LSKTLTSHKIVPKHQVDLENYVFTEGSRLMSNKAVKLPEGSFRRTGK 479
Query: 456 GYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNIL 515
GYEEIHVPA L +E+L+KI E+PEW+ AF LNR+QS +Y A + +NIL
Sbjct: 480 GYEEIHVPAPNKAVLGADERLVKIKELPEWSHQAFLNTQSLNRIQSHLYPIAFGTDENIL 539
Query: 516 LCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ 575
LCAPTGAGKTNVA+L IL +L + +D SFN N+KIVY+AP+KALV E+V N S RL
Sbjct: 540 LCAPTGAGKTNVAMLCILNELQKHLREDLSFNLQNFKIVYIAPLKALVQEMVNNFSKRLT 599
Query: 576 MYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635
Y+++V EL+GD LT+QQI ETQIIVTTPEKWDIITRK+ D +Y LV+L+IIDE+HLL
Sbjct: 600 PYNIRVAELTGDSQLTKQQISETQIIVTTPEKWDIITRKANDLSYVNLVRLVIIDEVHLL 659
Query: 636 HDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSY 695
HD RGPVLESIVAR R E T E +RLVGLSATLPNY DVA FL V+ +KGLFYFD++Y
Sbjct: 660 HDERGPVLESIVARIFRHQEETLEQVRLVGLSATLPNYTDVASFLHVDPKKGLFYFDSTY 719
Query: 696 RPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRD 755
RP PL Q++IGI K P +R Q N+ CYEKV+ AGK+QVLIFVHSRKETAKTAR IRD
Sbjct: 720 RPCPLKQEFIGITEKTPFKRMQTTNEACYEKVMQHAGKNQVLIFVHSRKETAKTARFIRD 779
Query: 756 TALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDL 815
ALE +T+G L+ D+ SREIL++ D +LKDLLPYGFAIHHAGM R DRQ EDL
Sbjct: 780 KALEEETIGHLLRSDAASREILRAEADSTSDENLKDLLPYGFAIHHAGMRREDRQTSEDL 839
Query: 816 FGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQ 875
F DG +QVLVSTATLAWGVNLPAHTVIIKGTQ+Y+PEKG WTELSP D++QMLGRAGRPQ
Sbjct: 840 FADGTIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGIWTELSPQDVLQMLGRAGRPQ 899
Query: 876 YDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWI 935
+D+YGEGIIIT HSEL+YYLSLMNQQLPIESQF+ +LAD LNAE+ LGTV++ ++ +W+
Sbjct: 900 FDTYGEGIIITAHSELQYYLSLMNQQLPIESQFMRRLADCLNAEVSLGTVRSIEDGVDWL 959
Query: 936 GYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQ 995
GYTYLY+RMLR+PALY + PE +D L ++RADL+H+AA +L++ L+ Y+R+SG
Sbjct: 960 GYTYLYVRMLRSPALYSVGPE-YDDDKYLVQKRADLLHSAAILLEKCKLLVYNRQSGTLT 1018
Query: 996 VTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKL 1055
T+LG++A+ YY++H +++ YN L T IEL R+FS S+EFK++ VR++EK+ELAKL
Sbjct: 1019 ATELGKVAASYYVTHNSMAIYNRLLMQTTSFIELFRVFSFSDEFKHIPVREEEKVELAKL 1078
Query: 1056 LDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVL 1115
L+RVPIP++E L+EP+AKIN LLQ+YIS+ +L+G +L +DMV++TQSAGR++RA+FEI L
Sbjct: 1079 LERVPIPIRERLDEPAAKINALLQSYISRQRLDGFALVADMVYVTQSAGRIMRAIFEISL 1138
Query: 1116 KRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQE 1175
+RGW+ +A +L+ KM+ KR+W +PLRQF P+E++ ++EKK+F W+RY+DL P E
Sbjct: 1139 RRGWSSVATLSLDTCKMIEKRLWPTMSPLRQFPNCPSEVIRRVEKKEFPWQRYFDLDPAE 1198
Query: 1176 LGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEP 1235
LGEL+ PK GR ++ V FP+L + AHVQPITR++++VEL I F WDD + G E
Sbjct: 1199 LGELVGVPKEGRRVYNMVQSFPRLSVEAHVQPITRSLVRVELVINSQFNWDDHLSGTSEA 1258
Query: 1236 FWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGVLV 1295
FW++VED DG+ +LH+E F L K+Y +++H +NFTVP+ EPLPP YFI++VSD+WL +
Sbjct: 1259 FWILVEDVDGDRLLHYEQFFLLKKYKDDEHIVNFTVPLLEPLPPCYFIKIVSDRWLHSIT 1318
Query: 1296 CVWLN 1300
V L+
Sbjct: 1319 KVPLS 1323
Score = 219 bits (559), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 170/686 (24%), Positives = 334/686 (48%), Gaps = 44/686 (6%)
Query: 488 PAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFN 547
P FK N++Q++V+ S + D++ + AP G+GKT A L +L + + D G+
Sbjct: 1360 PNFKF---FNKIQTQVFNSVYKTNDSVFIGAPNGSGKTVCAELALLHHWS--QEDYGT-- 1412
Query: 548 HSNYKIVYVAPMKALV----AEVVGNLSNRLQMYDVKVR-ELSGDQTLTRQQIEETQIIV 602
VY+AP++ +V E G S+ + D KV +L+G+++ + I+ +I
Sbjct: 1413 -----AVYIAPIQEIVDRRYEEWYGKFSD---LGDGKVLVKLTGERSQDLKLIQVADLIF 1464
Query: 603 TTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIR 662
TP +WD ++++ Q V I DE+ LL GP+ E +++R +++IR
Sbjct: 1465 CTPSQWDSLSKRWRSMRSIQKVDFYICDELQLLGGFYGPLYEIVISRIRYMAVQLEKNIR 1524
Query: 663 LVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDL 722
+VGLS ++ N D+ +L + + +F F RP PL+ + M+
Sbjct: 1525 VVGLSVSVANARDLGEWLGTS-PQCIFNFSPKDRPNPLTIHLQSFSITHFPSLMLAMSKP 1583
Query: 723 CYEKVVA-VAGKHQVLIFVHSRKETAKTARAIRDTAL--ENDTLGRFLKEDSVSREILQS 779
Y + ++ + ++F RK + A + ++ E++ L ++ ++ ++
Sbjct: 1584 IYRSLKNFISQRKSTIVFTPDRKVAKQLAFDLVTFSMADEDEYLFSLMENEAFNK----- 1638
Query: 780 HTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAH 839
V+ L+ L +G A + D+ +V+ L+ G ++VL+++ + + + ++
Sbjct: 1639 ----VEDAALQQSLKHGIAYISEITSSNDQNIVQYLYRHGLIKVLIASRDVIYSLKAKSN 1694
Query: 840 TVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMN 899
VI+ GTQ Y+ ++ + + +++QMLG + I++T ++ YY +N
Sbjct: 1695 AVIVMGTQYYDGKEHRYIDYPISELLQMLGFTASIGSSELSQVILMTVTTKKEYYKKFLN 1754
Query: 900 QQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLK 959
+ LP+ES L D +EI T+++ ++A +W+ ++Y+Y R++ NPA YGL
Sbjct: 1755 EPLPMESHLQVWLHDAFVSEISTQTIESKQDAVDWLTWSYMYRRLVANPAYYGL------ 1808
Query: 960 EDIT---LGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTY 1016
+DIT + E +DLV T L L+ D + +L IAS+Y I++ T+ T+
Sbjct: 1809 QDITHESVSEFLSDLVETTMNDLSEARLITVDDEDDSCVALNLAMIASHYGITYITMQTF 1868
Query: 1017 NEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKE-SLEEPSAKIN 1075
L L + + + E++ + +R+ E + L ++ R+P+ + + E+P K
Sbjct: 1869 ALSLSERTKMKGLLEIVTSAAEYEQLPIRKYEDIVLERIHSRLPVRLSNPNYEDPHTKSF 1928
Query: 1076 VLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTK 1135
+LL A+ S+ +L L D FI LL A + + G + + +S+MVT+
Sbjct: 1929 ILLAAHFSRFELPP-GLVIDQKFILTRVHNLLGACVDTLSSEGHLIACIRPMEMSQMVTQ 1987
Query: 1136 RMWSVQTPLRQFNGIPNEILMKLEKK 1161
+W +PL+Q + ++ + K+
Sbjct: 1988 ALWDRDSPLKQIPYFDDALIERCNKE 2013
>sp|P32639|BRR2_YEAST Pre-mRNA-splicing helicase BRR2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BRR2 PE=1 SV=2
Length = 2163
Score = 938 bits (2425), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 535/1309 (40%), Positives = 784/1309 (59%), Gaps = 64/1309 (4%)
Query: 18 YEYRANSSLVLTTDSRPRDTHE------PTGEPESLWGKIDPRSFGDRAFRGRPPELEE- 70
Y Y S+ VL D R +T + +P+S+ G+I + G L+E
Sbjct: 17 YRYDEMSNKVLKVDKRFMNTSQNPQRDAEISQPKSMSGRISAKDMGQGLCNNINKGLKEN 76
Query: 71 -----KLKKSAKKKKERDPDADAAAASEGT--YQPKTKETRAAYEAMLSVIQQQLGGQ-P 122
K KSA KK + + ++S+ Y PK YE +L + + LG P
Sbjct: 77 DVAVEKTGKSASLKKIQQHNTILNSSSDFRLHYYPKDPSNVETYEQILQWVTEVLGNDIP 136
Query: 123 LNIVSGAADEILAVLK----NDAVKNPDKKKEIEKLLN-PIPNHVFDQLVSIGKLITDYQ 177
+++ G AD + LK N+ ++K++I+ L I + F++LV + K ITDY+
Sbjct: 137 HDLIIGTADIFIRQLKENEENEDGNIEERKEKIQHELGINIDSLKFNELVKLMKNITDYE 196
Query: 178 DAGDAAGNDA-ANGGEDLDDDMGVAVEFEENDD----DEEESDLDMVQEEDEEEEEDVAE 232
D + A A +D D E N + + +++ D + + + E + +
Sbjct: 197 THPDNSNKQAVAILADDEKSDEEEVTEMSNNANVLGGEINDNEDDDEEYDYNDVEVNSKK 256
Query: 233 PNASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAE 292
N + I +S +N S+ + ID ++LQRK+ + D Q L+E
Sbjct: 257 KNKRALPNIENDIIKLSDSKTSNIE-SVPIYSIDEFFLQRKLRSELGYK-DTSVIQDLSE 314
Query: 293 EVLKILA--EGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKI 350
++L + E + +E KL+ L+F+ SL +F+L+NR + W RLA++ + E I
Sbjct: 315 KILNDIETLEHNPVALEQKLVDLLKFENISLAEFILKNRSTIFWGIRLAKSTENEIPNLI 374
Query: 351 EEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGRDRRGLVD 410
E+ M+ G + + T + +E ++ EA+R K + +
Sbjct: 375 EK-MVAKGLNDLVEQYKFRETTHSKRELDSGDDQPQSSEAKRTKFSNPAIP--------- 424
Query: 411 RDADGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPL 470
++DL+ + F + M K LPEGS + Y+EIH+PA +
Sbjct: 425 -----------PVIDLEKIKFDESSKLMTVTKVSLPEGSFKRVKPQYDEIHIPAPSKPVI 473
Query: 471 DPNEKLIKISEMPEWAQPAFKG--MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVA 528
D +L +I+ +P+W Q AF T LN +QS+V+ +A N+L+CAPTG+GKTN+A
Sbjct: 474 D--YELKEITSLPDWCQEAFPSSETTSLNPIQSKVFHAAFEGDSNMLICAPTGSGKTNIA 531
Query: 529 VLTILQQLALNRN-DDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGD 587
+LT+L+ L+ + N N S +KIVY+AP+KALV E V RL +KV EL+GD
Sbjct: 532 LLTVLKALSHHYNPKTKKLNLSAFKIVYIAPLKALVQEQVREFQRRLAFLGIKVAELTGD 591
Query: 588 QTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIV 647
L+R+QI+ETQ++V+TPEKWDI TR S + +LV+LLIIDEIHLLHD+RGPVLESIV
Sbjct: 592 SRLSRKQIDETQVLVSTPEKWDITTRNSNNLAIVELVRLLIIDEIHLLHDDRGPVLESIV 651
Query: 648 ARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGI 707
ART + +E+ R++GLSATLPNYEDV FLRV E GLFYFD+S+RP PLSQQ+ GI
Sbjct: 652 ARTFWASKYGQEYPRIIGLSATLPNYEDVGRFLRVPKE-GLFYFDSSFRPCPLSQQFCGI 710
Query: 708 QVKKPLQRFQLMNDLCYEKVV-AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRF 766
+ + L++ + MND CYEKV+ ++ +Q+++FVHSRKET++TA +++ E + +
Sbjct: 711 KERNSLKKLKAMNDACYEKVLESINEGNQIIVFVHSRKETSRTATWLKNKFAEENITHKL 770
Query: 767 LKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVS 826
K D+ S++IL++ V L+ L+ G HHAG+TR DR L EDLF DG +QVLV
Sbjct: 771 TKNDAGSKQILKTEAANVLDPSLRKLIESGIGTHHAGLTRSDRSLSEDLFADGLLQVLVC 830
Query: 827 TATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT 886
TATLAWGVNLPAHTVIIKGT +Y+PEKG+W +LSP D++QMLGRAGRP+YD++GEGIIIT
Sbjct: 831 TATLAWGVNLPAHTVIIKGTDVYSPEKGSWEQLSPQDVLQMLGRAGRPRYDTFGEGIIIT 890
Query: 887 GHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLR 946
S ++YYLS++NQQLPIESQFVSKL D LNAE+V G ++ +A NW+ YTYLY+RML
Sbjct: 891 DQSNVQYYLSVLNQQLPIESQFVSKLVDNLNAEVVAGNIKCRNDAVNWLAYTYLYVRMLA 950
Query: 947 NPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYY 1006
+P LY + P++ D L + R LVH+A IL LV YD ++ + TDLG IAS +
Sbjct: 951 SPMLYKV-PDI-SSDGQLKKFRESLVHSALCILKEQELVLYDAENDVIEATDLGNIASSF 1008
Query: 1007 YISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKES 1066
YI+H ++ YN L I+L R+FS+SEEFKYV+VR +EK EL +LL++ PIP++E
Sbjct: 1009 YINHASMDVYNRELDEHTTQIDLFRIFSMSEEFKYVSVRYEEKRELKQLLEKAPIPIRED 1068
Query: 1067 LEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKA 1126
+++P AK+NVLLQ+Y SQLK EG +L SD+VFI Q+AGRLLRA+FEI LKRGW
Sbjct: 1069 IDDPLAKVNVLLQSYFSQLKFEGFALNSDIVFIHQNAGRLLRAMFEICLKRGWGHPTRML 1128
Query: 1127 LNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDL-SPQELGELIRFPKM 1185
LNL K T +MW PLRQF P E++ +LE W Y L +P E+G IR K
Sbjct: 1129 LNLCKSATTKMWPTNCPLRQFKTCPVEVIKRLEASTVPWGDYLQLETPAEVGRAIRSEKY 1188
Query: 1186 GRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDG 1245
G+ ++ + +FPK+ + + QPITR+V++ + I D++WD VHG +EPF +++ED DG
Sbjct: 1189 GKQVYDLLKRFPKMSVTCNAQPITRSVMRFNIEIIADWIWDMNVHGSLEPFLLMLEDTDG 1248
Query: 1246 EYILHHEYFMLKKQYIEEDHSLNFTVPIYE----PLPPQYFIRVVSDKW 1290
+ IL+++ + + + +L+FT + + LPP +F+ ++S+ W
Sbjct: 1249 DSILYYDVLFITPDIVGHEFTLSFTYELKQHNQNNLPPNFFLTLISENW 1297
Score = 194 bits (493), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 178/706 (25%), Positives = 333/706 (47%), Gaps = 64/706 (9%)
Query: 496 LNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVY 555
N++QS+V++S +S D++ + + G GKT +A L +L N+ + VY
Sbjct: 1348 FNKIQSQVFESLYNSNDSVFVGSGKGTGKTAMAELALLNHWRQNKG----------RAVY 1397
Query: 556 VAPMKALVAEVVGNLSNRLQMY--DVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITR 613
+ P + ++ + + R + +L D +L + + ++ +++ TP ++++++R
Sbjct: 1398 INPSGEKIDFLLSDWNKRFSHLAGGKIINKLGNDPSLNLKLLAKSHVLLATPVQFELLSR 1457
Query: 614 KSGDRTYTQLVKLLIIDEIHLLHDN-RGPVLESIVARTVRQIETTKEHIRLVGLSATLPN 672
+ R Q ++L+I D+ H + G V E++++R + ++ IR V LS L N
Sbjct: 1458 RWRQRKNIQSLELMIYDDAHEISQGVYGAVYETLISRMIFIATQLEKKIRFVCLSNCLAN 1517
Query: 673 YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQR----FQLMNDLCYEKVV 728
D + + + ++ F S R PL I IQ K ++ F ++
Sbjct: 1518 ARDFGEWAGMT-KSNIYNFSPSERIEPLE---INIQSFKDVEHISFNFSMLQMAFEASAA 1573
Query: 729 AVAGKHQVLIFVHSRKETAKTARAIR--DTALENDTLGRFLKEDSVSREILQSHTDMVKS 786
A ++ +F+ SRK+ + A A A+E D L +V E + + + +
Sbjct: 1574 AAGNRNSSSVFLPSRKDCMEVASAFMKFSKAIEWDML-------NVEEEQIVPYIEKLTD 1626
Query: 787 NDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGT 846
L+ L +G I + GM D ++V+ L+ G V VL+ + + VII GT
Sbjct: 1627 GHLRAPLKHGVGILYKGMASNDERIVKRLYEYGAVSVLLISKDCS-AFACKTDEVIILGT 1685
Query: 847 QIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSY-GEGIIITGHSELRYYLSLMNQQLPIE 905
+Y+ + + + ++++M+G A DS G+ +I+T H+ YY + + LP E
Sbjct: 1686 NLYDGAEHKYMPYTINELLEMVGLAS--GNDSMAGKVLILTSHNMKAYYKKFLIEPLPTE 1743
Query: 906 SQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGL---APEVLKEDI 962
S + D LN EI +Q+ ++ +W Y+Y Y R+ NP+ YG+ +P + +
Sbjct: 1744 SYLQYIIHDTLNNEIANSIIQSKQDCVDWFTYSYFYRRIHVNPSYYGVRDTSPHGISVFL 1803
Query: 963 TLGERRADLVHTAATILDRNNLVKYDR---------KSGYFQVTDL------GRIASYYY 1007
++LV T L ++ ++ D G + T++ G IAS+Y
Sbjct: 1804 ------SNLVETCLNDLVESSFIEIDDTEAEVTAEVNGGDDEATEIISTLSNGLIASHYG 1857
Query: 1008 ISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPI--PVKE 1065
+S TI ++ L T + + S + EF+ V +R+ ++ L KL R+P+ P
Sbjct: 1858 VSFFTIQSFVSSLSNTSTLKNMLYVLSTAVEFESVPLRKGDRALLVKLSKRLPLRFPEHT 1917
Query: 1066 SLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEK 1125
S S K+ +LLQAY S+L+L + +D+ I + L+ + +I+ G+ A
Sbjct: 1918 SSGSVSFKVFLLLQAYFSRLELP-VDFQNDLKDILEKVVPLINVVVDILSANGYLN-ATT 1975
Query: 1126 ALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDL 1171
A++L++M+ + +W V PLRQ N+IL K K+ E YD+
Sbjct: 1976 AMDLAQMLIQGVWDVDNPLRQIPHFNNKILEKC--KEINVETVYDI 2019
>sp|F1NTD6|ASCC3_CHICK Activating signal cointegrator 1 complex subunit 3 OS=Gallus gallus
GN=ascc3 PE=3 SV=2
Length = 2211
Score = 879 bits (2272), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/1041 (44%), Positives = 667/1041 (64%), Gaps = 44/1041 (4%)
Query: 293 EVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEE 352
E+L GD E++N+L L + F LI+ LL+NR +V R Q+ + + ++E
Sbjct: 261 EMLASPKSGD--ELQNELFELLGPEGFELIEKLLQNRSVIV--ERSLTCQNDNKFQTLQE 316
Query: 353 EMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREE----ARRLKDESASDGGRDRRGL 408
+ + A T E++K L K R E ARR K ++ DG GL
Sbjct: 317 QCKKFIGENAKPNYGCQVT--IQSEQEKLLMKQYRREEKRNARREK-QAGEDGEVSGEGL 373
Query: 409 VDRDA---------------DGGWLGQRQLLDLDTLAF----------QQGGLFMANRKC 443
+ D LG+++ +DL+ + + + F+ K
Sbjct: 374 LCFDPKELRLQRELALLNARSVPILGRQREVDLERIHYPHVYDSRAEAMKTSAFIGGAKV 433
Query: 444 DLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRV 503
LPE QR NK YEE+ +P + P+ EK++ I ++ E Q AFKGM +LNR+QS V
Sbjct: 434 FLPESVQRENNKMYEEVKIPHSEPMPIGIEEKIVYIKDLDEIGQLAFKGMKRLNRIQSIV 493
Query: 504 YKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALV 563
+++A ++ +N+L+CAPTGAGKTN+A+LT+L ++ G +KIVYVAPMKAL
Sbjct: 494 FETAYNTNENMLICAPTGAGKTNIAMLTVLHEIR-QHVQHGVIKKDEFKIVYVAPMKALA 552
Query: 564 AEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS-GDRTYTQ 622
AE+ S RL+ + V+EL+GD L++ +I TQ++VTTPEKWD++TRKS GD +Q
Sbjct: 553 AEMTNYFSKRLEPLGITVKELTGDMQLSKGEILRTQMLVTTPEKWDVVTRKSVGDVALSQ 612
Query: 623 LVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRV 682
LVKLLI+DE+HLLH++RGPVLESIVART+RQ+E+T+ IR++GLSATLPNY DVA FL V
Sbjct: 613 LVKLLILDEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHV 672
Query: 683 NLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKHQVLIFVH 741
N GLFYFD+ +RPVPL Q +IGI+ +Q+ M+++CYE V+ + HQV++FVH
Sbjct: 673 NPYIGLFYFDSRFRPVPLGQTFIGIKTTNKVQQLNHMDEVCYENVLKQIMAGHQVMVFVH 732
Query: 742 SRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHH 801
+R T +TA A+R+ A N + FL + ++ L++L P GF+IHH
Sbjct: 733 ARNATVRTAMALREKAKNNGHICHFLSPQGSDYGQAEKQVQRSRNKQLRELFPDGFSIHH 792
Query: 802 AGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSP 861
AGM R DR LVE+LF +GH++VLV TATLAWGVNLPAH V+IKGTQIY ++G++ +L
Sbjct: 793 AGMLRQDRSLVENLFSNGHIKVLVCTATLAWGVNLPAHAVVIKGTQIYAAKRGSFVDLGI 852
Query: 862 LDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIV 921
LD+MQ+ GRAGRPQ+D +GEGIIIT H +L +YL+L+ QQ PIESQF+ LAD LNAEI
Sbjct: 853 LDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLTLLTQQNPIESQFLESLADNLNAEIA 912
Query: 922 LGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDR 981
LGTV N +EA WI YTYLY+RM NP +YG++ + + D L + R LV LD+
Sbjct: 913 LGTVTNVEEAVKWISYTYLYVRMRANPLVYGISHKAYQMDPGLEKHREQLVIEVGRKLDK 972
Query: 982 NNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKY 1041
+++++ ++G+F TDLGR AS+YYI + TI T+NE + ++ + S +EEF+
Sbjct: 973 ARMIRFEERTGFFSSTDLGRTASHYYIKYNTIETFNELFDAHKTEGDILAIVSKAEEFEQ 1032
Query: 1042 VTVRQDEKMELAKLL-DRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFIT 1100
+ VR++E EL LL D +P +E KIN+LLQ YIS+ +L+ SL SD ++
Sbjct: 1033 IKVREEEIEELDTLLNDFCELPAPGGVENNYGKINILLQTYISRGELDSFSLISDSAYVA 1092
Query: 1101 QSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEK 1160
Q+A R++RALFEI L++ W + + LNLSK++ KR+W +PLRQF+ +P +L KLE+
Sbjct: 1093 QNAARIVRALFEIALRKRWPAMTYRLLNLSKVIDKRLWGWVSPLRQFSVLPPSVLSKLEE 1152
Query: 1161 KDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTIT 1220
K+ ++ D+ E+G ++ K+G + + VHQ P + + A +QPITRTVL+V L IT
Sbjct: 1153 KNLTVDKMKDMRKDEIGHMLHHVKIGLKVKQCVHQIPSIAMEATIQPITRTVLRVRLNIT 1212
Query: 1221 PDFLWDDKVHGYV-EPFWVIVEDNDGEYILHHEYFMLKKQYI--EEDHSLNFTVPIYEPL 1277
PDF W+D+VHG V EP+W+ VED ++I H EYF+++K+ + +E L FT+PI+EPL
Sbjct: 1213 PDFTWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFIIQKKQVITKEPQLLVFTIPIFEPL 1272
Query: 1278 PPQYFIRVVSDKWLGV-LVCV 1297
P QY+IR VSD+WLG VC+
Sbjct: 1273 PSQYYIRAVSDRWLGAEAVCI 1293
Score = 387 bits (994), Expect = e-106, Method: Compositional matrix adjust.
Identities = 237/675 (35%), Positives = 373/675 (55%), Gaps = 25/675 (3%)
Query: 472 PNEKLIKISEMPEWA--QPAFKGM---TQLNRVQSRVYKSALSSADNILLCAPTGAGKTN 526
P+ +L+ + +P A P ++ + T N +Q++++ + + N+LL APTG+GKT
Sbjct: 1307 PHTELLDLQPLPVTALGHPEYEVLYKFTHFNPIQTQIFHTLYHTDCNVLLGAPTGSGKTV 1366
Query: 527 VAVLTILQQLALNRNDDGSFN-HSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVREL 584
A L I + FN + K VY+AP+KALV E + + R++ KV EL
Sbjct: 1367 AAELAIFR----------VFNKYPTSKAVYIAPLKALVRERIEDWKVRIEEKLGKKVVEL 1416
Query: 585 SGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLE 644
+GD T + I + +IVTTPEKWD ++R +R+Y Q V +LIIDEIHLL D RGPVLE
Sbjct: 1417 TGDVTPDMRAIAQADLIVTTPEKWDGVSRSWQNRSYVQKVSILIIDEIHLLGDERGPVLE 1476
Query: 645 SIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQY 704
IV+RT T++ +R+VGLS L N D+A +L +N + GLF F S RPVPL
Sbjct: 1477 VIVSRTNFISSHTEKPVRVVGLSTALANARDLADWLNIN-QMGLFNFRPSVRPVPLEVHI 1535
Query: 705 IGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLG 764
G + R MN ++ + + + VLIFV SR++T T+ + D
Sbjct: 1536 QGFPGQHYCPRMARMNKPAFQAIRSHSPAKPVLIFVSSRRQTRLTSLDLIAFLATEDDPK 1595
Query: 765 RFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVL 824
++LK D RE + V+ ++LK L +G +HHAG+ DR+ VE+LF + +QVL
Sbjct: 1596 QWLKMDE--RE-MNDIIGTVRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKIQVL 1652
Query: 825 VSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGII 884
++T+TLAWGVN PAH VI+KGT+ Y+ + + + D++QM+GRAGRPQ+D G+ +I
Sbjct: 1653 IATSTLAWGVNFPAHLVIVKGTEYYDGKTRRYVDYPITDVLQMMGRAGRPQFDDQGKAVI 1712
Query: 885 ITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRM 944
+ + +Y + + P+ES + LAD LNAEI GT+ + ++A ++I +TY + R+
Sbjct: 1713 LVHDIKKDFYKKFLYEPFPVESSLLDVLADHLNAEIAAGTITSKQDAMDYITWTYFFRRL 1772
Query: 945 LRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIAS 1004
+ NP Y L + + D T+ + + LV + L+ + ++ + + GRIAS
Sbjct: 1773 IMNPTYYNL--DNVSHD-TMNKYLSSLVEKSLFDLECSYCIEIGEDNRTIEPLTYGRIAS 1829
Query: 1005 YYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVK 1064
YYY+ H TI + + LKP EL + + ++E+ + VR +E ++L +PI V
Sbjct: 1830 YYYLKHPTIGMFKDQLKPESSVEELLLILTNADEYTDLPVRHNEDQMNSELAKHLPIEVN 1889
Query: 1065 -ESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLA 1123
S + K ++LLQA+ S L +D + A R+ +A+ ++ GW A
Sbjct: 1890 PHSFDSSHTKTHLLLQAHFSHAILPCPDYATDTKTVLDQAIRICQAMLDVTAHHGWLVAA 1949
Query: 1124 EKALNLSKMVTKRMW 1138
NL +MV + W
Sbjct: 1950 LNITNLVQMVVQGRW 1964
>sp|E1BNG3|ASCC3_BOVIN Activating signal cointegrator 1 complex subunit 3 OS=Bos taurus
GN=ascc3 PE=3 SV=1
Length = 2201
Score = 867 bits (2239), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/1040 (43%), Positives = 666/1040 (64%), Gaps = 43/1040 (4%)
Query: 293 EVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEE 352
++L + GD E++++L L D LI+ LL+NR+ +V R + + + + +++
Sbjct: 253 DMLASVKSGD--ELQDELFELLGPDGLELIEKLLQNRVTIV--DRFLNSSNDHKLQALQD 308
Query: 353 EMMGLGPDLAAILDQLHATRATAK-ERQKNLEKSIREEARRL--KDESASDGGRDRRGLV 409
+ L + + T + E++K L K R E +R+ +++ A + G GL+
Sbjct: 309 NCKKI---LGENAKPNYGCQVTIQSEQEKQLMKQYRREEKRIARREKKAGEDGEATEGLL 365
Query: 410 DRDADGGWLGQRQLL---------------DLDTLAF----------QQGGLFMANRKCD 444
D + + Q L D++ + + + F+A K
Sbjct: 366 CFDPKELRIHREQALMNARNVPILSRQRDTDVEKIRYPHVYDSQAEAMRTSAFIAGAKMI 425
Query: 445 LPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVY 504
LPEG QR NK YEE+ +P + P+ EK + I ++ E Q AFKGM +LNR+QS V+
Sbjct: 426 LPEGIQRENNKIYEEVKIPYTEPMPIGFEEKPVYIQDLDEIGQLAFKGMRRLNRIQSIVF 485
Query: 505 KSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564
++A ++ +N+L+CAPTGAGKTN+A+LT+L ++ G + +KIVYVAPMKAL A
Sbjct: 486 ETAYNTNENMLICAPTGAGKTNIAMLTVLHEIR-QHFQQGVIKKNEFKIVYVAPMKALAA 544
Query: 565 EVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS-GDRTYTQL 623
E+ S RL+ + V+EL+GD L++ +I TQ++VTTPEKWD++TRKS GD +Q+
Sbjct: 545 EMTNYFSKRLEPLGIVVKELTGDMQLSKNEILRTQMLVTTPEKWDVVTRKSVGDVALSQI 604
Query: 624 VKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN 683
VKLLI+DE+HLLH++RGPVLESIVART+RQ+E+T+ IR++GLSATLPNY DVA FL VN
Sbjct: 605 VKLLILDEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHVN 664
Query: 684 LEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKHQVLIFVHS 742
GLF+FD +RPVPL Q ++GI+ +Q+ M+++CYE V+ V HQV++FVH+
Sbjct: 665 PCIGLFFFDGRFRPVPLGQTFLGIKSANKVQQLNNMDEVCYESVLKQVKAGHQVMVFVHA 724
Query: 743 RKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHA 802
R T +TA ++ + A N + FL + ++ +++L P GF+IHHA
Sbjct: 725 RNATVRTAMSLIERAKNNGQICYFLPTQGPEYGHAEKQVQKSRNRQVRELFPDGFSIHHA 784
Query: 803 GMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPL 862
GM R DR LVE LF +GH++VLV TATLAWGVNLPAH VIIKGTQIY ++G++ +L L
Sbjct: 785 GMLRQDRNLVESLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGSFVDLGIL 844
Query: 863 DIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVL 922
D+MQ+ GRAGRPQ+D +GEGIIIT H +L +YLSL+ QQ PIESQF+ LAD LNAEI L
Sbjct: 845 DVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLSLLTQQNPIESQFLESLADNLNAEIAL 904
Query: 923 GTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRN 982
GTV N +EA WI YTYLY+RM NP +YG++ + + D TL + R LV LD+
Sbjct: 905 GTVTNVEEAVKWISYTYLYVRMRANPLVYGISHKAYQIDPTLAKHREQLVIEVGRKLDKA 964
Query: 983 NLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYV 1042
+++++ ++GYF TDLGR AS+YYI + TI T+NE + ++ + S +EEF +
Sbjct: 965 RMIRFEERTGYFSSTDLGRTASHYYIKYNTIETFNELFDAHKTESDIFAIVSKAEEFDQI 1024
Query: 1043 TVRQDEKMELAKLLDR-VPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQ 1101
VR++E EL LL + +E KIN+LLQ YIS+ +++ SL SD ++ Q
Sbjct: 1025 KVREEEIEELDTLLSNFCELSAPGGVENSYGKINILLQTYISRGEVDSFSLISDSAYVAQ 1084
Query: 1102 SAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKK 1161
+A R++RALFEI L++ W + + LNLSK++ KR+W +PLRQF+ +P IL +LE+K
Sbjct: 1085 NAARIVRALFEIALRKRWPAMTYRLLNLSKVIDKRLWGWTSPLRQFSVLPPHILTRLEEK 1144
Query: 1162 DFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITP 1221
+ ++ D+ E+G ++ +G + + VHQ P + + A +QPITRTVL+V L+I+P
Sbjct: 1145 NLTVDKLKDMRKDEIGHILHHVNIGLKVKQCVHQIPSVTMEASIQPITRTVLRVTLSISP 1204
Query: 1222 DFLWDDKVHGYV-EPFWVIVEDNDGEYILHHEYFM-LKKQYI-EEDHSLNFTVPIYEPLP 1278
DF W+D+VHG V EP+W+ VED ++I H EYF+ LKKQ I +E L FT+PI+EPLP
Sbjct: 1205 DFSWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFLVLKKQVISKEAQLLVFTIPIFEPLP 1264
Query: 1279 PQYFIRVVSDKWLGV-LVCV 1297
QY+IR VSD+WLG VC+
Sbjct: 1265 SQYYIRAVSDRWLGAEAVCI 1284
Score = 382 bits (982), Expect = e-105, Method: Compositional matrix adjust.
Identities = 244/700 (34%), Positives = 382/700 (54%), Gaps = 31/700 (4%)
Query: 472 PNEKLIKISEMPEWA-----QPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTN 526
P+ +L+ + +P A A + N VQ++++ + + N+LL APTG+GKT
Sbjct: 1298 PHTELLDLQPLPVTALGCEAYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTV 1357
Query: 527 VAVLTILQQLALNRNDDGSFN-HSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVREL 584
A L I + FN + K VY+AP+KALV E + + R++ KV EL
Sbjct: 1358 AAELAIFR----------VFNKYPTSKAVYIAPLKALVRERMDDWKVRIEEKLGKKVIEL 1407
Query: 585 SGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLE 644
+GD T + I + +IVTTPEKWD ++R +R Y + V +LIIDEIHLL + RGPVLE
Sbjct: 1408 TGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRNYVKQVTILIIDEIHLLGEERGPVLE 1467
Query: 645 SIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQY 704
IV+RT T++ +R+VGLS L N D+A +L + + GLF F S RPVPL
Sbjct: 1468 VIVSRTNFISSHTEKPVRIVGLSTALANARDLADWLNIR-QMGLFNFRPSVRPVPLEVHI 1526
Query: 705 IGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTA-RAIRDTALENDTL 763
G + R MN ++ + + + VLIFV SR++T TA I A E D
Sbjct: 1527 QGFPGQHYCPRMASMNKPTFQAIRSHSPAKPVLIFVSSRRQTRLTALELIAFLATEEDP- 1585
Query: 764 GRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQV 823
++L D RE +++ ++ ++LK L +G +HHAG+ DR+ VE+LF + +QV
Sbjct: 1586 KQWLNMDE--RE-MENIIGTIRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKIQV 1642
Query: 824 LVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883
L++T+TLAWGVN PAH VIIKGT+ Y+ + + + D++QM+GRAGRPQ+D G+ +
Sbjct: 1643 LIATSTLAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAV 1702
Query: 884 IITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIR 943
I+ + +Y + + P+ES + L+D LNAEI GT+ + ++A ++I +TY + R
Sbjct: 1703 ILVHDIKKDFYKKFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQDAMDYITWTYFFRR 1762
Query: 944 MLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIA 1003
++ NP+ Y L+ + D ++ + ++LV + L+ + ++ + + GRIA
Sbjct: 1763 LIMNPSYYNLSD--VSHD-SVNKFLSNLVEKSLVELEHSYCIEIGEDNRSIEPLTYGRIA 1819
Query: 1004 SYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDE---KMELAKLLDRVP 1060
SYYY+ H T+ + E LKP G EL + S +EE+ + VR +E ELAK L
Sbjct: 1820 SYYYLKHQTVKMFKERLKPECGTEELLSILSDAEEYTDLPVRHNEDHMNSELAKCLPLES 1879
Query: 1061 IPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWA 1120
P S + P K ++LLQA++S+ L +D + A R+ +A+ ++ +GW
Sbjct: 1880 NP--HSFDSPHTKAHLLLQAHLSRTMLPCPDYDTDTKTVLDQALRVCQAMLDVAAHQGWL 1937
Query: 1121 QLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEK 1160
+L +MV + W + L I N L K
Sbjct: 1938 VTVLNITSLVQMVIQGRWLKDSSLLTIPHIENHHLHIFRK 1977
>sp|Q8N3C0|ASCC3_HUMAN Activating signal cointegrator 1 complex subunit 3 OS=Homo sapiens
GN=ASCC3 PE=1 SV=3
Length = 2202
Score = 852 bits (2200), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/894 (47%), Positives = 602/894 (67%), Gaps = 9/894 (1%)
Query: 411 RDADGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPL 470
RDAD + + D A + F+A K LPEG QR NK YEE+ +P + PL
Sbjct: 393 RDADVEKIHYPHVYDSQAEAMKTSA-FIAGAKMILPEGIQRENNKLYEEVRIPYSEPMPL 451
Query: 471 DPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVL 530
EK + I ++ E Q AFKGM +LNR+QS V+++A ++ +N+L+CAPTGAGKTN+A+L
Sbjct: 452 SFEEKPVYIQDLDEIGQLAFKGMKRLNRIQSIVFETAYNTNENMLICAPTGAGKTNIAML 511
Query: 531 TILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590
T+L ++ G + +KIVYVAPMKAL AE+ S RL+ + V+EL+GD L
Sbjct: 512 TVLHEIR-QHFQQGVIKKNEFKIVYVAPMKALAAEMTDYFSRRLEPLGIIVKELTGDMQL 570
Query: 591 TRQQIEETQIIVTTPEKWDIITRKS-GDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVAR 649
++ +I TQ++VTTPEKWD++TRKS GD +Q+V+LLI+DE+HLLH++RGPVLESIVAR
Sbjct: 571 SKSEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVRLLILDEVHLLHEDRGPVLESIVAR 630
Query: 650 TVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQV 709
T+RQ+E+T+ IR++GLSATLPNY DVA FL VN GLF+FD +RPVPL Q ++GI+
Sbjct: 631 TLRQVESTQSMIRILGLSATLPNYLDVATFLHVNPYIGLFFFDGRFRPVPLGQTFLGIKC 690
Query: 710 KKPLQRFQLMNDLCYEKVVA-VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLK 768
+Q+ M+++CYE V+ V HQV++FVH+R T +TA ++ + A + F
Sbjct: 691 ANKMQQLNNMDEVCYENVLKQVKAGHQVMVFVHARNATVRTAMSLIERAKNCGHIPFFFP 750
Query: 769 EDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTA 828
+ + ++ +++L P GF+IHHAGM R DR LVE+LF +GH++VLV TA
Sbjct: 751 TQGHDYVLAEKQVQRSRNKQVRELFPDGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTA 810
Query: 829 TLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888
TLAWGVNLPAH VIIKGTQIY ++G++ +L LD+MQ+ GRAGRPQ+D +GEGIIIT H
Sbjct: 811 TLAWGVNLPAHAVIIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTH 870
Query: 889 SELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNP 948
+L +YL+L+ Q+ PIESQF+ LAD LNAEI LGTV N +EA WI YTYLY+RM NP
Sbjct: 871 DKLSHYLTLLTQRNPIESQFLESLADNLNAEIALGTVTNVEEAVKWISYTYLYVRMRANP 930
Query: 949 ALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYI 1008
YG++ + + D TL + R LV LD+ +++++ ++GYF TDLGR AS+YYI
Sbjct: 931 LAYGISHKAYQIDPTLRKHREQLVIEVGRKLDKAQMIRFEERTGYFSSTDLGRTASHYYI 990
Query: 1009 SHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDR-VPIPVKESL 1067
+ TI T+NE + ++ + S +EEF + VR++E EL LL + +
Sbjct: 991 KYNTIETFNELFDAHKTEGDIFAIVSKAEEFDQIKVREEEIEELDTLLSNFCELSTPGGV 1050
Query: 1068 EEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKAL 1127
E KIN+LLQ YIS+ +++ SL SD ++ Q+A R++RALFEI L++ W + + L
Sbjct: 1051 ENSYGKINILLQTYISRGEMDSFSLISDSAYVAQNAARIVRALFEIALRKRWPTMTYRLL 1110
Query: 1128 NLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGR 1187
NLSK++ KR+W +PLRQF+ +P IL +LE+K ++ D+ E+G ++ +G
Sbjct: 1111 NLSKVIDKRLWGWASPLRQFSILPPHILTRLEEKKLTVDKLKDMRKDEIGHILHHVNIGL 1170
Query: 1188 TLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYV-EPFWVIVEDNDGE 1246
+ + VHQ P +++ A +QPITRTVL+V L+I DF W+D+VHG V EP+W+ VED +
Sbjct: 1171 KVKQCVHQIPSVMMEASIQPITRTVLRVTLSIYADFTWNDQVHGTVGEPWWIWVEDPTND 1230
Query: 1247 YILHHEYFM-LKKQYI-EEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGV-LVCV 1297
+I H EYF+ LKKQ I +E L FT+PI+EPLP QY+IR VSD+WLG VC+
Sbjct: 1231 HIYHSEYFLALKKQVISKEAQLLVFTIPIFEPLPSQYYIRAVSDRWLGAEAVCI 1284
Score = 381 bits (978), Expect = e-104, Method: Compositional matrix adjust.
Identities = 242/698 (34%), Positives = 380/698 (54%), Gaps = 27/698 (3%)
Query: 472 PNEKLIKISEMPEWA-----QPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTN 526
P+ +L+ + +P A A + N VQ++++ + + N+LL APTG+GKT
Sbjct: 1298 PHTELLDLQPLPITALGCKAYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTV 1357
Query: 527 VAVLTILQQLALNRNDDGSFN-HSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVREL 584
A L I + FN + K VY+AP+KALV E + + R++ KV EL
Sbjct: 1358 AAELAIFR----------VFNKYPTSKAVYIAPLKALVRERMDDWKVRIEEKLGKKVIEL 1407
Query: 585 SGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLE 644
+GD T + I + +IVTTPEKWD ++R +R Y Q V +LIIDEIHLL + RGPVLE
Sbjct: 1408 TGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRNYVQQVTILIIDEIHLLGEERGPVLE 1467
Query: 645 SIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQY 704
IV+RT T++ +R+VGLS L N D+A +L + + GLF F S RPVPL
Sbjct: 1468 VIVSRTNFISSHTEKPVRIVGLSTALANARDLADWLNIK-QMGLFNFRPSVRPVPLEVHI 1526
Query: 705 IGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTA-RAIRDTALENDTL 763
G + R MN ++ + + + VLIFV SR++T TA I A E D
Sbjct: 1527 QGFPGQHYCPRMASMNKPAFQAIRSHSPAKPVLIFVSSRRQTRLTALELIAFLATEEDP- 1585
Query: 764 GRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQV 823
++L D RE +++ V+ ++LK L +G +HHAG+ DR+ VE+LF + VQV
Sbjct: 1586 KQWLNMDE--RE-MENIIATVRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQV 1642
Query: 824 LVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883
L++T+TLAWGVN PAH VIIKGT+ Y+ + + + D++QM+GRAGRPQ+D G+ +
Sbjct: 1643 LIATSTLAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAV 1702
Query: 884 IITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIR 943
I+ + +Y + + P+ES + L+D LNAEI GT+ + ++A ++I +TY + R
Sbjct: 1703 ILVHDIKKDFYKKFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQDALDYITWTYFFRR 1762
Query: 944 MLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIA 1003
++ NP+ Y L + D ++ + + L+ + L+ + ++ + + GRIA
Sbjct: 1763 LIMNPSYYNLGD--VSHD-SVNKFLSHLIEKSLIELELSYCIEIGEDNRSIEPLTYGRIA 1819
Query: 1004 SYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPV 1063
SYYY+ H T+ + + LKP EL + S +EE+ + VR +E ++L +PI
Sbjct: 1820 SYYYLKHQTVKMFKDRLKPECSTEELLSILSDAEEYTDLPVRHNEDHMNSELAKCLPIES 1879
Query: 1064 K-ESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQL 1122
S + P K ++LLQA++S+ L +D + A R+ +A+ ++ +GW
Sbjct: 1880 NPHSFDSPHTKAHLLLQAHLSRAMLPCPDYDTDTKTVLDQALRVCQAMLDVAANQGWLVT 1939
Query: 1123 AEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEK 1160
NL +MV + W + L I N L +K
Sbjct: 1940 VLNITNLIQMVIQGRWLKDSSLLTLPNIENHHLHLFKK 1977
>sp|F1LPQ2|ASCC3_RAT Activating signal cointegrator 1 complex subunit 3 OS=Rattus
norvegicus GN=Ascc3 PE=2 SV=1
Length = 2197
Score = 849 bits (2193), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/875 (48%), Positives = 596/875 (68%), Gaps = 8/875 (0%)
Query: 430 AFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPA 489
A ++ F+A K LPEG QR K YEE+ +P + P+ EK + I ++ E Q A
Sbjct: 412 AARETSAFIAGAKMILPEGIQRENTKLYEEVRIPYSEPMPVGFEEKPVYIQDLDEVGQLA 471
Query: 490 FKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHS 549
FKGM +LNR+QS V+ +A ++ +N+L+CAPTGAGKTN+A+LT+L ++ + + G +
Sbjct: 472 FKGMKRLNRIQSIVFDTAYNTNENMLICAPTGAGKTNIAMLTVLHEIRQHFHQ-GVLKKN 530
Query: 550 NYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWD 609
+KIVYVAPMKAL AE+ S RL+ + V+EL+GD L++ +I TQ++VTTPEKWD
Sbjct: 531 EFKIVYVAPMKALAAEMTNYFSKRLEPLGIVVKELTGDMQLSKSEILRTQMLVTTPEKWD 590
Query: 610 IITRKS-GDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSA 668
++TRKS GD +Q+VKLLI+DE+HLLH++RGPVLESIVART+RQ+E+T+ IR++GLSA
Sbjct: 591 VVTRKSVGDVALSQIVKLLILDEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSA 650
Query: 669 TLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVV 728
TLPNY DVA FL VN GLFYFD +RPVPL Q ++GI+ +Q+ M+++CYE V+
Sbjct: 651 TLPNYLDVATFLHVNPYIGLFYFDGRFRPVPLGQTFLGIKSANKMQQLNNMDEVCYESVL 710
Query: 729 A-VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSN 787
V HQV++FVH+R T +TA ++ + A + + FL ++
Sbjct: 711 KQVKAGHQVMVFVHARNATVRTAMSLIERAKNSGQISCFLPTQGPEYGHALKQVQKSRNK 770
Query: 788 DLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQ 847
+++L GF+IHHAGM R DR LVE+LF +GH++VLV TATLAWGVNLPAH VIIKGTQ
Sbjct: 771 QVRELFSDGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQ 830
Query: 848 IYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQ 907
IY ++G++ +L LD+MQ+ GRAGRPQ+D +GEGIIIT H +L +YLSL+ QQ PIESQ
Sbjct: 831 IYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLSLLTQQNPIESQ 890
Query: 908 FVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGER 967
F+ LAD LNAEI LGTV N +EA W+ YTYLY+RM NP YG++ + + D TL +
Sbjct: 891 FLESLADNLNAEIALGTVTNVEEAVKWMSYTYLYVRMRANPLAYGISHKAYQMDPTLRKH 950
Query: 968 RADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDI 1027
R L+ LD+ +++++ ++GYF TDLGR AS+YYI + TI T+NE +
Sbjct: 951 REQLLIEVGQKLDKARMIRFEERTGYFSSTDLGRTASHYYIKYNTIETFNELFDAHKTEG 1010
Query: 1028 ELCRLFSLSEEFKYVTVRQDEKMELAKLLDR-VPIPVKESLEEPSAKINVLLQAYISQLK 1086
++ + S +EEF + VR++E EL LL+ + +E KIN+LLQ YIS+ +
Sbjct: 1011 DIFAIVSKAEEFDQIKVREEEIEELDALLNNFCELSAPGGVENSYGKINILLQTYISRGE 1070
Query: 1087 LEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQ 1146
++ SL SD ++ Q+A R++RALFEI L++ W + + LNLSK++ KR+W +PLRQ
Sbjct: 1071 MDSFSLISDSAYVAQNAARIVRALFEIALRKRWPTMTYRLLNLSKVIDKRLWGWASPLRQ 1130
Query: 1147 FNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQ 1206
F+ +P IL +LE+K+ ++ D+ E+G ++ +G + + VHQ P + + A +Q
Sbjct: 1131 FSVLPPHILTRLEEKNLTVDKLKDMRKDEIGHILHHVNIGLKVKQCVHQIPSVTMEASIQ 1190
Query: 1207 PITRTVLKVELTITPDFLWDDKVHGYV-EPFWVIVEDNDGEYILHHEYFM-LKKQYI-EE 1263
PITRTVL+V L I PDF W+D+VHG V EP+W+ VED ++I H EYF+ LKKQ I +E
Sbjct: 1191 PITRTVLRVSLNIYPDFSWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFLALKKQVINKE 1250
Query: 1264 DHSLNFTVPIYEPLPPQYFIRVVSDKWLGV-LVCV 1297
L FT+PI+EPLP QY+IR VSD+WLG VC+
Sbjct: 1251 AQLLVFTIPIFEPLPSQYYIRAVSDRWLGAEAVCI 1285
Score = 362 bits (930), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 226/675 (33%), Positives = 362/675 (53%), Gaps = 26/675 (3%)
Query: 472 PNEKLIKISEMPEWA-----QPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTN 526
P+ +L+ + +P A A + N VQ++++ + + N+LL APTG+GKT
Sbjct: 1299 PHTELLDLQPLPVTALGCKAYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTV 1358
Query: 527 VAVLTILQQLALNRNDDGSFN-HSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVREL 584
A L I + FN + K VY+AP+KALV E + + R++ KV EL
Sbjct: 1359 AAELAIFR----------VFNKYPTSKAVYIAPLKALVRERMDDWKIRIEEKLGKKVIEL 1408
Query: 585 SGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLE 644
+GD T + I + +IVTTPEKWD ++R +R+Y Q V +LIIDEIHLL + RGPVLE
Sbjct: 1409 TGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRSYVQQVNILIIDEIHLLGEERGPVLE 1468
Query: 645 SIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQY 704
IV+RT T++ +R+VGLS L N D+A +L + + GLF F S RPVPL
Sbjct: 1469 VIVSRTNFISSHTEKPVRIVGLSTALANARDLADWLNIK-QMGLFNFRPSVRPVPLEVHI 1527
Query: 705 IGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLG 764
G + R MN +++ L+ + I A E D
Sbjct: 1528 QGFPGQHYCPRMASMNKPAFQESHTHCPDRPCLLLPERMLSSMTKLELIAFLATEEDP-K 1586
Query: 765 RFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVL 824
++L D E + + V+ ++LK L +G +HHAG+ DR+ VE+LF + VQVL
Sbjct: 1587 QWLNMDEQEMENIIA---TVRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVL 1643
Query: 825 VSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGII 884
++T+TLAWGVN PAH VIIKGT+ Y+ + + + D++QM+GRAGRPQ+D G+ +I
Sbjct: 1644 IATSTLAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVI 1703
Query: 885 ITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRM 944
+ + +Y + + P+ES + L+D LNAEI GT+ + ++A ++I +TY + R+
Sbjct: 1704 LVHDIKKDFYKKFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQDALDYITWTYFFRRL 1763
Query: 945 LRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIAS 1004
+ NP+ Y L + +D + + + L+ + L+ ++ ++ + + GRIAS
Sbjct: 1764 IMNPSYYNLGD--VSQD-AINKFLSHLIGQSLVELELSHCIEVGEDNRSIEPLTCGRIAS 1820
Query: 1005 YYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVK 1064
YYY+ H T+ + + LKP EL + S +EE+ + VR +E +L +PI +
Sbjct: 1821 YYYLKHKTVKMFKDRLKPECSTEELLSILSDAEEYTDLPVRHNEDHTNNELAKCLPIELN 1880
Query: 1065 -ESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLA 1123
S + P K ++LLQA++S+ L +D + A R+ +A+ ++ +GW
Sbjct: 1881 PHSFDSPHTKAHLLLQAHLSRAMLPCPDYDTDTKTVLDQALRVCQAMLDVAASQGWLVTT 1940
Query: 1124 EKALNLSKMVTKRMW 1138
+L +MV + W
Sbjct: 1941 LNITHLIQMVIQGRW 1955
>sp|E9PZJ8|ASCC3_MOUSE Activating signal cointegrator 1 complex subunit 3 OS=Mus musculus
GN=Ascc3 PE=2 SV=1
Length = 2198
Score = 848 bits (2191), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/1029 (43%), Positives = 660/1029 (64%), Gaps = 42/1029 (4%)
Query: 305 EVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAI 364
E++++L L + LI+ LL+NR+ +V R + + + +++ + L
Sbjct: 263 ELQDELFELLGPEGLDLIEKLLQNRITIV--DRFLNSSSDHKFQVLQDSCKKI---LGEN 317
Query: 365 LDQLHATRATAK-ERQKNLEKSIREEARRL---KDESASDGGRDRRGLVDRDA------- 413
+ + T + E++K L K R E +R+ + ++ DG G++ D
Sbjct: 318 SKPNYGCQVTIQSEQEKQLMKQYRREEKRIARREKKAGEDGEVSGEGVLPFDPKELRIQR 377
Query: 414 --------DGGWLGQRQLLDLDTLAF----------QQGGLFMANRKCDLPEGSQRFTNK 455
+ LG+++ ++ + + + ++ F+A K LPEG QR K
Sbjct: 378 EHALLNARNAPILGRQRDVEFEKIRYPHVYDSQAQARETSAFIAGAKMILPEGIQRENTK 437
Query: 456 GYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNIL 515
YEE+ +P + P+ EK + I ++ E Q AFKGM +LNR+QS V+++A ++ +N+L
Sbjct: 438 LYEEVRIPYGEPMPVGFEEKPVYIKDLDEVGQLAFKGMKRLNRIQSIVFETAYNTNENML 497
Query: 516 LCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ 575
+CAPTGAGKTN+A+LTIL ++ + + G + +KIVYVAPMKAL AE+ S RL+
Sbjct: 498 ICAPTGAGKTNIAMLTILHEIRQHFHQ-GVIKKNEFKIVYVAPMKALAAEMTNYFSKRLE 556
Query: 576 MYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS-GDRTYTQLVKLLIIDEIHL 634
+ V+EL+GD L++ +I TQ++VTTPEKWD++TRKS GD +Q+VKLLI+DE+HL
Sbjct: 557 PLGIVVKELTGDMQLSKSEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVKLLILDEVHL 616
Query: 635 LHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNS 694
LH++RGPVLESIVART+RQ+E+T+ IR++GLSATLPNY DVA FL VN GLFYFD
Sbjct: 617 LHEDRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHVNPYIGLFYFDGR 676
Query: 695 YRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKHQVLIFVHSRKETAKTARAI 753
+RPVPL Q ++GI+ +Q+ M+++CYE V+ V HQV++FVH+R T +TA ++
Sbjct: 677 FRPVPLGQTFLGIKSTNKMQQLNNMDEVCYESVLKQVKAGHQVMVFVHARNATVRTAMSL 736
Query: 754 RDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVE 813
+ A + + FL + ++ +++L GF+IHHAGM R DR LVE
Sbjct: 737 IERAKNSGQISCFLPTEGPEYGHALKQVQKSRNKQVRELFSDGFSIHHAGMLRQDRNLVE 796
Query: 814 DLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873
+LF +GH++VLV TATLAWGVNLPAH V+IKGTQIY ++G++ +L LD+MQ+ GRAGR
Sbjct: 797 NLFSNGHIKVLVCTATLAWGVNLPAHAVVIKGTQIYAAKRGSFVDLGILDVMQIFGRAGR 856
Query: 874 PQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACN 933
PQ+D +GEGIIIT H +L +YLSL+ QQ PIESQF+ LAD LNAEI LGTV N +EA
Sbjct: 857 PQFDKFGEGIIITTHDKLSHYLSLLTQQNPIESQFLESLADNLNAEIALGTVTNVEEAVR 916
Query: 934 WIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGY 993
W+ YTYLY+RM NP YG++ + + D TL + R L+ LD+ +++++ ++GY
Sbjct: 917 WMSYTYLYVRMRANPLAYGISHKAYQIDPTLRKHREQLLIEVGQKLDKAKMIRFEERTGY 976
Query: 994 FQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELA 1053
F TDLGR AS++YI + TI T+NE + ++ + S +EEF + VR++E EL
Sbjct: 977 FSSTDLGRTASHFYIKYNTIETFNELFDAHKTEGDIFAIVSKAEEFDQIKVREEEIEELD 1036
Query: 1054 KLLDR-VPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFE 1112
LL+ + +E KIN+LLQ YIS+ +++ SL SD ++ Q+A R++RALFE
Sbjct: 1037 ALLNNFCELSAPGGVENSYGKINILLQTYISRGEMDSFSLISDSAYVAQNAARIVRALFE 1096
Query: 1113 IVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLS 1172
I L++ W + + LNLSK++ KR+W +PLRQF+ +P IL +LE+K+ ++ D+
Sbjct: 1097 IALRKRWPTMTYRLLNLSKVIDKRLWGWASPLRQFSVLPPHILTRLEEKNLTVDKLKDMR 1156
Query: 1173 PQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGY 1232
E+G ++ +G + + VHQ P + + A +QPITRTVL+V L I PDF W+D+VHG
Sbjct: 1157 KDEIGHILHHVNIGLKVKQCVHQIPSVTMEASIQPITRTVLRVSLNIHPDFSWNDQVHGT 1216
Query: 1233 V-EPFWVIVEDNDGEYILHHEYFM-LKKQYI-EEDHSLNFTVPIYEPLPPQYFIRVVSDK 1289
V EP+W+ VED ++I H EYF+ LKKQ I +E L FT+PI+EPLP QY+IR VSD+
Sbjct: 1217 VGEPWWIWVEDPTNDHIYHSEYFLALKKQVINKEAQLLVFTIPIFEPLPSQYYIRAVSDR 1276
Query: 1290 WLGV-LVCV 1297
WLG VC+
Sbjct: 1277 WLGAEAVCI 1285
Score = 379 bits (973), Expect = e-104, Method: Compositional matrix adjust.
Identities = 234/676 (34%), Positives = 374/676 (55%), Gaps = 27/676 (3%)
Query: 472 PNEKLIKISEMPEWA-----QPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTN 526
P+ +L+ + +P A A + N VQ++++ + + N+LL APTG+GKT
Sbjct: 1299 PHTELLDLQPLPITALGCKAYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTV 1358
Query: 527 VAVLTILQQLALNRNDDGSFN-HSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVREL 584
A L I + FN + K VY+AP+KALV E + + R++ KV EL
Sbjct: 1359 AAELAIFR----------VFNKYPTSKAVYIAPLKALVRERMDDWKIRIEEKLGKKVIEL 1408
Query: 585 SGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLE 644
+GD T + I + +IVTTPEKWD ++R +R+Y Q V +LIIDEIHLL + RGPVLE
Sbjct: 1409 TGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRSYVQQVNILIIDEIHLLGEERGPVLE 1468
Query: 645 SIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQY 704
IV+RT T++ +R+VGLS L N D+A +L + + GLF F S RPVPL
Sbjct: 1469 VIVSRTNFISSHTEKPVRIVGLSTALANARDLADWLNIK-QMGLFNFRPSVRPVPLEVHI 1527
Query: 705 IGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTA-RAIRDTALENDTL 763
G + R MN ++ + + + VLIFV SR++T TA I A E D
Sbjct: 1528 QGFPGQHYCPRMASMNKPAFQAIRSHSPAKPVLIFVSSRRQTRLTALELIAFLATEEDP- 1586
Query: 764 GRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQV 823
++L D + + + V+ ++LK L +G +HHAG+ DR+ VE+LF + VQV
Sbjct: 1587 KQWLNMD---EQEMDNIIGTVRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQV 1643
Query: 824 LVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883
L++T+TLAWGVN PAH VIIKGT+ Y+ + + + D++QM+GRAGRPQ+D G+ +
Sbjct: 1644 LIATSTLAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAV 1703
Query: 884 IITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIR 943
I+ + +Y + + P+ES + L+D LNAEI GT+ + ++A ++I +TY + R
Sbjct: 1704 ILVHDIKKDFYKKFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQDAMDYITWTYFFRR 1763
Query: 944 MLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIA 1003
++ NP+ Y L + +D ++ + + L+ + L+ ++ ++ + + GRIA
Sbjct: 1764 LIMNPSYYSLGD--VSQD-SINKFLSHLIGQSLVELELSHCIEVGEDNRTIEPLTCGRIA 1820
Query: 1004 SYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPV 1063
SYYY+ H T+ + + LKP EL + S +EE+ + VR +E +L +PI +
Sbjct: 1821 SYYYLKHKTVKMFKDRLKPECSTEELLSILSDAEEYTDLPVRHNEDHTNNELAKCLPIEL 1880
Query: 1064 K-ESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQL 1122
S + P K ++LLQA++S+ L +D + A R+ +A+ ++ +GW
Sbjct: 1881 NPHSFDSPHTKAHLLLQAHLSRAMLPCPDYDTDTKTVLDQALRVCQAMLDVAASQGWLVT 1940
Query: 1123 AEKALNLSKMVTKRMW 1138
+L +MV + W
Sbjct: 1941 VLNITHLIQMVIQGRW 1956
>sp|Q54G57|HELC1_DICDI Activating signal cointegrator 1 complex subunit 3 OS=Dictyostelium
discoideum GN=ascc3 PE=3 SV=1
Length = 2195
Score = 800 bits (2065), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/856 (46%), Positives = 579/856 (67%), Gaps = 11/856 (1%)
Query: 442 KCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISE-MPEWAQPAFKGMTQLNRVQ 500
K LP+G+ R + E+ VP KP NEKLI+I E + E ++ AF + +LNR+Q
Sbjct: 428 KIALPKGTVRTEKTTHTEVMVPYSLAKPFADNEKLIEIGESIAEISRAAFGSIKKLNRIQ 487
Query: 501 SRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMK 560
SRV++SA S +NIL+ APTGAGKTN+A+LTIL ++ N N G + N+KI+Y+AP+K
Sbjct: 488 SRVFESAYKSNENILISAPTGAGKTNIALLTILHEIESNINPYGYLDKDNFKIIYIAPLK 547
Query: 561 ALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTY 620
AL +E+V SN L+ + +EL+GD LT+++++ETQIIVTTPEKWD+ITRKS D
Sbjct: 548 ALASEMVEKFSNSLKYLGIVSKELTGDMQLTQKELKETQIIVTTPEKWDVITRKSSDVAL 607
Query: 621 TQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFL 680
T+LV+L+IIDEIHLLH+ RGPVLE IVART+RQ+ETT+E IR+VGLSATLPNY+DVA F+
Sbjct: 608 TKLVRLIIIDEIHLLHEERGPVLECIVARTLRQVETTQEMIRIVGLSATLPNYKDVARFI 667
Query: 681 RVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQL-MNDLCYEKV-VAVAGKHQVLI 738
R G +FD+SYRPVPL+Q +IG++ + + + MN LCYE++ ++ HQV+I
Sbjct: 668 RAP-ASGTHFFDSSYRPVPLTQNFIGVKDNQGIMVMKNNMNQLCYERLEKSLKEGHQVMI 726
Query: 739 FVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFA 798
FVHSRK+T K+A + D A E RF E+ + + VKS +++ L +G +
Sbjct: 727 FVHSRKDTVKSAEILSDMAKEKHF--RFSNEEPSFGA--KKEFEKVKSKEIRSLFQHGIS 782
Query: 799 IHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTE 858
+HHAG+ R DR +VE F +G ++VLV TATLAWGVNLPAHTVIIKGTQ+YN + G + +
Sbjct: 783 VHHAGLLRSDRNVVEKYFANGTIKVLVCTATLAWGVNLPAHTVIIKGTQVYNAKNGGFMD 842
Query: 859 LSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNA 918
L D+MQ+ GRAGRPQ+D+ GEG ++T +L +YLSLM+ +PIES+F++ L D LNA
Sbjct: 843 LGISDVMQIFGRAGRPQFDTSGEGFLLTSKDKLDHYLSLMSSSMPIESKFITNLEDHLNA 902
Query: 919 EIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATI 978
EIVLGTV N EA NW+ YTYL+IRML+NP +YG+ +D L E + +++ AA
Sbjct: 903 EIVLGTVSNVNEAVNWLSYTYLFIRMLQNPLVYGIPSSQRSKDPQLEEFKREIIIRAAKK 962
Query: 979 LDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEE 1038
L++ + ++D +S +T+LGRIAS+YYI H +I T+NE L +G ++ + S S E
Sbjct: 963 LEQCKMTRFDEQSENLGMTELGRIASHYYIKHPSIETFNEMLNDQLGQDQVLNILSNSSE 1022
Query: 1039 FKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVF 1098
F+ +T+R++E EL KL + + ++ + +K+ LLQA+ S+ ++G SL SD +
Sbjct: 1023 FENITLREEESTELDKLAEN-QCYYELTVLDSHSKVKCLLQAFFSRANIDGFSLVSDSNY 1081
Query: 1099 ITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKL 1158
Q++ R+LR LFEI LK+GW +++ L+L KMV ++W ++PLRQ + + + K+
Sbjct: 1082 TVQNSSRILRGLFEISLKKGWCTVSKTILDLCKMVDHQLWHFESPLRQAKVLSLDTIRKI 1141
Query: 1159 EKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELT 1218
E++D+ ER D+ EL ++ + +T K QFP+L VQPIT ++++ +T
Sbjct: 1142 EERDWTPERICDMEIGELSFVLGNQLIAKTTRKIAQQFPQLDFEIQVQPITANIIRINMT 1201
Query: 1219 ITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFT--VPIYEP 1276
+ P F W+DK+HG +PFW+ V+DN+ +YI H EYFML K+ + + T +P+ P
Sbjct: 1202 LIPMFSWNDKMHGDSQPFWIWVQDNESQYIFHSEYFMLTKKIYNQTEPITLTCIIPLPNP 1261
Query: 1277 LPPQYFIRVVSDKWLG 1292
+P Q+F+ +SD+WLG
Sbjct: 1262 MPSQFFLHYISDRWLG 1277
Score = 369 bits (947), Expect = e-101, Method: Compositional matrix adjust.
Identities = 227/704 (32%), Positives = 386/704 (54%), Gaps = 46/704 (6%)
Query: 473 NEKLIKISEMPEWA------QPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTN 526
N +L+ + +P+ A + FK + N +Q++V+ + + +N+LL +PTG+GKT
Sbjct: 1299 NTELLDLQPLPKEALKNKDFESLFK-FSHFNPIQTQVFHTLYYTNNNVLLGSPTGSGKTI 1357
Query: 527 VAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVRELS 585
A L + + + + K+VY+AP+KALV E + + + Q K+ EL+
Sbjct: 1358 CAELAMFKVFR---------DEPHMKVVYIAPLKALVRERMNDWKVKFQEKLGKKLVELT 1408
Query: 586 GDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLES 645
GD T ++ I+ TTPEKWD I+R +R+Y V LLIIDEIHL+ + RGP+LE
Sbjct: 1409 GDYTPNMIALQNADIVTTTPEKWDGISRNWKNRSYVTSVSLLIIDEIHLIGELRGPILEV 1468
Query: 646 IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYI 705
IV+R + T +IR+VGLS + N D++ ++ ++ GLF F S RPVP+
Sbjct: 1469 IVSRMKLISKQTGVNIRVVGLSTAMANAIDLSEWMGID-RVGLFNFRPSCRPVPIEVHIQ 1527
Query: 706 GIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTA-RAIRDTALENDTLG 764
G Q K R Q MN + + + K VLIFV SR++T TA I ++ND L
Sbjct: 1528 GFQGKNYCPRMQTMNKPSFAAIATYSPKKPVLIFVSSRRQTRLTALDLISYLVVDNDPLQ 1587
Query: 765 RFLK----EDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGH 820
K E +++R VK L+ L +G +HHAG+ GDR +VE LFG+
Sbjct: 1588 WIQKGFDIEPTLAR---------VKDQHLRHTLSFGIGMHHAGLNDGDRTIVESLFGENK 1638
Query: 821 VQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYG 880
+Q+L+ST+TLAWGVNLPAH VIIKGT+ ++ + + + D++QM+GRAGRPQ+D G
Sbjct: 1639 IQILISTSTLAWGVNLPAHLVIIKGTEYFDGKTKRYVDFPLTDVLQMIGRAGRPQFDKEG 1698
Query: 881 EGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYL 940
+ +++ + ++Y + P+ES L D LNAEIV GT+Q+ + A N++ T+
Sbjct: 1699 KAMVMVHEPKKQFYKKFLYDPFPVESHLKDFLHDHLNAEIVSGTIQSKQGAINYLVNTFF 1758
Query: 941 YIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLG 1000
+ R++ +P+ YGL ++ + + +DL+ + L++++ ++ + ++ +G
Sbjct: 1759 FRRLVVSPSYYGLEDNSVE---AVNQYLSDLLDSTLADLEQSSCIEINEYDEIIPMS-MG 1814
Query: 1001 RIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVP 1060
+IAS+YY+++ T+ +++++K L R+ S + E+ VR +E++ +L + +P
Sbjct: 1815 KIASFYYLNYKTVQNFSDNIKRDSDIKTLLRVLSDAAEYSEFPVRHNEEILNQELNENLP 1874
Query: 1061 IPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWA 1120
I + + E+ K+++LLQA+ + L T+D R+L+A+ ++ + G+
Sbjct: 1875 IKIG-NYEDSHTKVHLLLQAHFQRCPLPITDFTTDTKSALDQGIRILQAMIDVSFEYGYF 1933
Query: 1121 QLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFA 1164
A + + L +M+ + W + L I KDFA
Sbjct: 1934 ATAIQVIRLLQMLVQGRWDYDSSLMTLPHI---------NKDFA 1968
>sp|E7F8F4|ASCC3_DANRE Activating signal cointegrator 1 complex subunit 3 OS=Danio rerio
GN=ascc3 PE=3 SV=2
Length = 1534
Score = 785 bits (2026), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/859 (45%), Positives = 560/859 (65%), Gaps = 41/859 (4%)
Query: 445 LPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVY 504
LPEG +R NK YEE+ +P + P+ EK + +SE+ E Q FKGM +LNR+QS V+
Sbjct: 23 LPEGIRRDNNKMYEEVEIPPNEPMPIGFEEKAVFVSELDEIGQLVFKGMKRLNRIQSIVF 82
Query: 505 KSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564
++A ++ +N+L+CAPTGAGKTN+A+LTIL ++ + G +KIVYVAPMKAL A
Sbjct: 83 ETAYNTNENLLICAPTGAGKTNIAMLTILHEIRQHLQPGGVIRKDQFKIVYVAPMKALAA 142
Query: 565 EVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS-GDRTYTQL 623
E+ S RL+ + V+EL+GD LT+ +I TQ++VTTPEKWD++TRKS GD +Q+
Sbjct: 143 EMTNYFSKRLEPLGIAVKELTGDMQLTKGEILRTQMLVTTPEKWDVVTRKSVGDVALSQV 202
Query: 624 VKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN 683
V+LLI+DE+HLLH++RGPVLES+VART+RQ+E+T+ IR++GLSATLPNY DVA FL VN
Sbjct: 203 VRLLILDEVHLLHEDRGPVLESLVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHVN 262
Query: 684 LEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKHQVLIFVHS 742
GLFYFD+ +RPVPL Q ++GI+ +Q+ M ++CYEKV+ + HQV++FVH+
Sbjct: 263 PFIGLFYFDSRFRPVPLGQSFVGIKTTNKVQQLHDMEEVCYEKVLKQIKAGHQVMVFVHA 322
Query: 743 RKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHA 802
R T +TA ++ + A L F + + ++ ++++ P GF IHHA
Sbjct: 323 RNSTVRTAMSLIEMAKNRGELSFFQVDQGADYGQCEKQIQRSRNKQMREMFPDGFGIHHA 382
Query: 803 GMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPL 862
GM R DR L+E +F G+++VLV TATLAWGVNLPAH VIIKGT IY+ ++G +L L
Sbjct: 383 GMLRQDRSLMESMFSRGYLKVLVCTATLAWGVNLPAHAVIIKGTNIYDAKRGTLVDLGIL 442
Query: 863 DIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVL 922
D+MQ+ GRAGRPQ+D YGEG IIT H +L +YL+L+ QQ PIESQF LAD LNAEI L
Sbjct: 443 DVMQIFGRAGRPQFDKYGEGTIITTHDKLSHYLTLLTQQNPIESQFQQSLADNLNAEIAL 502
Query: 923 GTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRN 982
GTV N EA W+ YTYLY+RM NP YG+ + + D L R +LV + LD+
Sbjct: 503 GTVTNVDEAVRWLSYTYLYVRMRANPLAYGINHKAYQMDPQLELYRKELVVESGRKLDKA 562
Query: 983 NLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYV 1042
++++D ++GYF TDLGR AS++YI + TI ++NE + ++ + S +EEF+ +
Sbjct: 563 RMIRFDERTGYFASTDLGRTASHFYIKYNTIESFNELFNAQNTEADVLSIVSKAEEFEQI 622
Query: 1043 TVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQS 1102
VR V+E + + + +L ++ + +
Sbjct: 623 KVR-----------------VQEEDADGKSSVQILCGSHHT------------------N 647
Query: 1103 AGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKD 1162
A R++RALFE+ L++ W + + LNL K++ KR+W PLRQFN +P L ++E K+
Sbjct: 648 AARIMRALFEMALRKRWPAMTYRLLNLCKVMDKRLWGWAHPLRQFNTLPASALARMEDKN 707
Query: 1163 FAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPD 1222
++ D+ E+G ++ +G + + VHQ P ++L + +QPITRTVL+V L+ITPD
Sbjct: 708 LTIDKLRDMGKDEIGHMLHHVNIGLKVKQCVHQIPAILLESSIQPITRTVLRVRLSITPD 767
Query: 1223 FLWDDKVHGYV-EPFWVIVEDNDGEYILHHEYFMLKKQYI--EEDHSLNFTVPIYEPLPP 1279
F W+D+VHG V EP+W+ VED ++I H EYF+L+K+ + E + FT+PI+EP+P
Sbjct: 768 FRWNDQVHGSVGEPWWLWVEDPINDHIYHSEYFLLQKKQVVSGEPQQVVFTIPIFEPMPS 827
Query: 1280 QYFIRVVSDKWLGV-LVCV 1297
QY+IR VSD+WLG VC+
Sbjct: 828 QYYIRAVSDRWLGSEAVCI 846
Score = 346 bits (887), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 208/576 (36%), Positives = 327/576 (56%), Gaps = 34/576 (5%)
Query: 472 PNEKLIKISEMPEWA-----QPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTN 526
P+ +L+ + +P A + T N +Q++++ + + N+LL APTG+GKT
Sbjct: 860 PHTELLDLQPLPITALGNREYESLYKFTHYNPIQTQIFHTLYHTDTNVLLGAPTGSGKTI 919
Query: 527 VAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVRELS 585
A + I + + + K+VY+AP+KALV E + + R++ KV EL+
Sbjct: 920 AAEMAIFRVFNM---------YPTSKVVYIAPLKALVRERIEDWKIRIEEKLGRKVVELT 970
Query: 586 GDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLES 645
GD T + I + +IVTTPEKWD ++R +R+Y Q V +LIIDEIHLL ++RGPVLE
Sbjct: 971 GDNTPDMRAIAQADLIVTTPEKWDGVSRSWQNRSYVQKVAILIIDEIHLLGEDRGPVLEV 1030
Query: 646 IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYI 705
IV+RT T + +R+VGLS L N D+A +L + + GLF F S RPVPL
Sbjct: 1031 IVSRTNFISSHTSKTVRVVGLSTALANARDLADWLGIG-QVGLFNFRPSVRPVPLEVHIQ 1089
Query: 706 GIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGR 765
G + R MN ++ + + VLIFV SR++T TA + D +
Sbjct: 1090 GFPGQHYCPRMATMNKPVFQAIRTHSPAKPVLIFVSSRRQTRLTALDLIAFLATEDDPKQ 1149
Query: 766 FLKEDSVSREILQSHTDMV---KSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQ 822
+L +D RE+ TD++ + ++LK L +G +HHAG+ DR+ VE+LF + +Q
Sbjct: 1150 WLHQDE--REM----TDIIATIRESNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKIQ 1203
Query: 823 VLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEG 882
VL++T+TLAWGVN PAH VI+KGT+ Y+ + + + D++QM+GRAGRPQ+D G+
Sbjct: 1204 VLIATSTLAWGVNFPAHLVIVKGTEYYDGKTRRYVDYPITDVLQMMGRAGRPQFDDQGKA 1263
Query: 883 IIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYI 942
+I+ + +Y + + P+ES +S L+D LNAEI GTV + ++A ++I +TY +
Sbjct: 1264 VILVHDIKKDFYKKFLYEPFPVESSLLSVLSDHLNAEIAAGTVTSKQDAMDYITWTYFFR 1323
Query: 943 RMLRNPALYGLAPEVLKEDI---TLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDL 999
R++ NP+ Y L +DI T+ + ++LV + L+ + ++ + +
Sbjct: 1324 RLVMNPSYYNL------DDISHETINKYLSNLVERSLRDLECSYCMEIQQDEQTIEPLTY 1377
Query: 1000 GRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSL 1035
GRI+SYYY+ H TI + E LKP + EL + SL
Sbjct: 1378 GRISSYYYLKHQTIRMFKERLKPELPVHELLAILSL 1413
>sp|O60072|MUG81_SCHPO Putative helicase mug81 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=mug81 PE=1 SV=1
Length = 1935
Score = 780 bits (2014), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/983 (42%), Positives = 611/983 (62%), Gaps = 40/983 (4%)
Query: 345 EERKKIEEEMMGL-GPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGR 403
E++ I+E+++ L G D ++ + A + E N + A +L D S+ G
Sbjct: 107 EDQCAIQEDLLNLVGLDHIDLISDIVANSSNLIEEYMNQNDT--SIAAQLSDGYTSEAGS 164
Query: 404 DR---RGLVDR------------DADGGWLGQRQLLDLDTLAFQQGGLFMAN------RK 442
+GL+D D G +Q+ +++ G + N +K
Sbjct: 165 SATHGQGLLDSLKSRPRRFSRSRDNRGPLFTGQQVFEVEKYPHVYGDKRLGNTISVIGKK 224
Query: 443 CDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSR 502
LP GS+R + YEEI VP + P EKL++IS M + F LNR+QS
Sbjct: 225 FALPAGSEREDYQKYEEIIVPHAQRAPQMQGEKLLEISSMDILCRKTFLSYQTLNRIQSL 284
Query: 503 VYKSALSSADNILLCAPTGAGKTNVAVLTILQQLA-----LNRNDDGS---FNHSNYKIV 554
VY A + +N+L+CAPTGAGKT+VA+L +LQ ++ +N D+ + ++KIV
Sbjct: 285 VYPIAYKTNENMLICAPTGAGKTDVALLAMLQTISNYVESMNLMDESEPLDVHRDDFKIV 344
Query: 555 YVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRK 614
Y+APMKAL AEVV + RL +K REL+GD LT+ +I ETQI+VTTPEKWD++TRK
Sbjct: 345 YIAPMKALAAEVVEKMGKRLAWLGLKTRELTGDMQLTKTEIAETQILVTTPEKWDVVTRK 404
Query: 615 S-GDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY 673
S GD + V+L+IIDE+H+LHD RG V+ES+VART R +ET+++ IR+VGLSATLPNY
Sbjct: 405 SVGDTQLAEKVRLVIIDEVHMLHDERGAVIESLVARTQRLVETSQQMIRIVGLSATLPNY 464
Query: 674 EDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGK 733
DVA FL VN KGLFYF +++RP P+ Q +IG + + + ++ C++KV+ + +
Sbjct: 465 LDVADFLGVNRYKGLFYFSSAFRPCPIEQHFIGAKGSPKIVNSNI-DEACFDKVLKLIQE 523
Query: 734 -HQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDL 792
HQV+IFVHSRKET +A+ +R+ + Q K+ +LK+L
Sbjct: 524 GHQVMIFVHSRKETINSAKKLREQFFHEGEADLLDNSQHEKYSLAQRDVSKSKNKELKEL 583
Query: 793 LPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPE 852
Y IH+AGM R DR L E LF G +++L TATLAWGVNLPA+ V+IKGTQ+Y+P+
Sbjct: 584 FKYSMGIHNAGMLRSDRHLTERLFSMGILKILCCTATLAWGVNLPAYAVLIKGTQLYDPQ 643
Query: 853 KGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKL 912
KG++ +L LD++Q+ GRAGRPQ++S IIT H +L +Y+S++ QQ PIES+F +L
Sbjct: 644 KGSFVDLGVLDVLQIFGRAGRPQFESSAVAYIITTHDKLSHYISVVTQQSPIESRFTDRL 703
Query: 913 ADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLV 972
D LNAE+ LGTV N EA +W+GYTYLYIRM RNP +YG+A + L ED LG +R +LV
Sbjct: 704 VDNLNAEVSLGTVTNIDEAVSWLGYTYLYIRMRRNPLVYGIAYDELVEDPLLGSKRRELV 763
Query: 973 HTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRL 1032
AA L N ++ Y++K+GY DLGRIAS YYI++ T+ST N LK M + ++ L
Sbjct: 764 SVAAGRLADNQMIVYNKKNGYLIPKDLGRIASNYYINYQTVSTLNNLLKSKMSEADIIAL 823
Query: 1033 FSLSEEFKYVTVRQDEKMELAKLL-DRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLS 1091
S EF + R++E EL L+ + P +++S+ S K+NV+LQ+YIS+ +E +
Sbjct: 824 LSQCSEFSQIKSRENEHRELESLMENSSPCQLRDSISNTSGKVNVILQSYISRAHVEDFT 883
Query: 1092 LTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIP 1151
LTSD ++ Q+AGR+ RALFEI + R WA A L+L+K + +R WS + PL QF+ +P
Sbjct: 884 LTSDTNYVAQNAGRITRALFEIAMSRTWAS-AFTILSLNKSIDRRQWSFEHPLLQFD-LP 941
Query: 1152 NEILMKLEKK--DFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPIT 1209
+++ +K+E + + E D+S ELG+LI KMG T+ KF+ + P L + + P+T
Sbjct: 942 HDLAVKVENQCGSLSLEELSDMSTGELGDLIHNRKMGPTVKKFISKLPLLNINVDLLPLT 1001
Query: 1210 RTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNF 1269
+ VL++ L ITP+F WD + HG + FW+ VED++G ILHHE +L K+ + H L+F
Sbjct: 1002 KNVLRLVLNITPNFNWDMRYHGNSQMFWIFVEDSNGLEILHHEQLLLNKRNVSTSHLLSF 1061
Query: 1270 TVPIYEPLPPQYFIRVVSDKWLG 1292
T+P+ PLP Q +I VSDKWLG
Sbjct: 1062 TIPVSNPLPSQLYIIAVSDKWLG 1084
Score = 356 bits (913), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 228/691 (32%), Positives = 364/691 (52%), Gaps = 45/691 (6%)
Query: 467 HKPLDPNEKLIKISEMPEWA--QPAFKGMTQ-----LNRVQSRVYKSALSSADNILLCAP 519
H +P +L+ + +P A P +G+ N VQ++ + + + NI + AP
Sbjct: 1099 HDDSNPITELLDLQPLPITALHDPVLEGICAKRFSFFNAVQTQFFHTIYHTDTNIFVGAP 1158
Query: 520 TGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL-QMYD 578
TG+GKT A L + L N+ K+VY+APMKALV E V + +RL +
Sbjct: 1159 TGSGKTMAAELATWRAL---------HNYPKSKVVYIAPMKALVKERVKDWGHRLVEPMG 1209
Query: 579 VKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDN 638
+ + EL+GD + + II+TTPEKWD ITR R Y Q V L+I+DEIHLL +
Sbjct: 1210 ISMIELTGDTNPDVKAVTNANIIITTPEKWDGITRSWKSRKYVQDVSLIILDEIHLLGSD 1269
Query: 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPV 698
RGPVLE IV+R T + +R++GLS + N D+A +L N+ GLF F +S RPV
Sbjct: 1270 RGPVLEMIVSRMNYVASQTNKKVRVLGLSTAVANANDLANWL--NIRDGLFNFRHSVRPV 1327
Query: 699 PLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTAL 758
PL G + R MN ++ + + VLIFV SR++T TA+ +
Sbjct: 1328 PLEIYIDGFPGRAYCPRMMSMNKPAFQAIKTHSPTQPVLIFVSSRRQTRLTAKDLIAFCG 1387
Query: 759 ENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGD 818
D RFL D E++ S V+ LK LP+G A+HHAG+T DR++ E+LF +
Sbjct: 1388 LEDNPRRFLYMDEEELEMIVSE---VEDKSLKLALPFGIALHHAGLTENDRKISEELFVN 1444
Query: 819 GHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDS 878
VQ+L++T+TLAWGVN PAH VI+KGT+ Y+ + G + ++ D++QMLGRAGRPQ+D+
Sbjct: 1445 NKVQILIATSTLAWGVNTPAHLVIVKGTEYYDAKIGGYKDMDLTDVLQMLGRAGRPQFDN 1504
Query: 879 YGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYT 938
G I + +Y ++ P+ES L + LNAEI GT+ + A +++ T
Sbjct: 1505 SGVARIFVQDIKKSFYKHFLHSGFPVESYLHKVLDNHLNAEIATGTIDCIQGAMDFLTCT 1564
Query: 939 YLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTD 998
Y Y R+ +NP YG + K ++ + LV TA L+++ + Y + T
Sbjct: 1565 YFYRRVHQNPVYYGADGDDQK---SIDTYLSKLVVTAFNELEKSACI-YRVNEETYAPTT 1620
Query: 999 LGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDR 1058
LGRI SYYY+ H TI + + + +L + + EF + +R +E D
Sbjct: 1621 LGRIVSYYYLFHTTIRNFVQKITENAEFDLALQLLAEASEFDDLAIRHNE--------DL 1672
Query: 1059 VPIPVKESLEEPSAKIN-----------VLLQAYISQLKLEGLSLTSDMVFITQSAGRLL 1107
+ I + +SL+ +A +N +L QA++++LKL +D + R++
Sbjct: 1673 INIEINKSLKYSAACLNLPMVDAHVKAFILTQAHMARLKLPVDDYVTDTSTVLDQVIRII 1732
Query: 1108 RALFEIVLKRGWAQLAEKALNLSKMVTKRMW 1138
++ ++ + G++ + + ++L + + + +
Sbjct: 1733 QSYIDVSAELGYSHVCLQYISLMQCLKQACY 1763
>sp|P53327|SLH1_YEAST Antiviral helicase SLH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SLH1 PE=1 SV=2
Length = 1967
Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/875 (42%), Positives = 562/875 (64%), Gaps = 24/875 (2%)
Query: 435 GLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPN---EKLIKISEMPEWAQPAFK 491
+ A +K LP G+ R + +EEI +PA + N KL+KIS++ + + F
Sbjct: 226 AMAFAGQKFTLPVGTTRMSYNTHEEIIIPAADQAS-NKNYLYTKLLKISDLDHFCKTVFP 284
Query: 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQL----ALNRNDDGSFN 547
T LN++QS VY A + +N+L+CAPTGAGKT++A+LTI+ + +N ++
Sbjct: 285 YET-LNQIQSLVYPVAYKTNENMLICAPTGAGKTDIALLTIINTIKQFSVVNGENEIDIQ 343
Query: 548 HSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEK 607
+ ++K++YVAP+KAL AE+V S +L ++++VREL+GD LT+ +I TQ+IVTTPEK
Sbjct: 344 YDDFKVIYVAPLKALAAEIVDKFSKKLAPFNIQVRELTGDMQLTKAEILATQVIVTTPEK 403
Query: 608 WDIITRKS-GDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGL 666
WD++TRK+ GD VKLLIIDE+HLLH++RG V+E++VART+RQ+E+++ IR++GL
Sbjct: 404 WDVVTRKANGDNDLVSKVKLLIIDEVHLLHEDRGSVIETLVARTLRQVESSQSMIRIIGL 463
Query: 667 SATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKK-PLQRFQLMNDLCYE 725
SATLPN+ DVA FL VN + G+FYFD S+RP PL QQ +G + K Q + ++ + Y+
Sbjct: 464 SATLPNFMDVADFLGVNRQIGMFYFDQSFRPKPLEQQLLGCRGKAGSRQSKENIDKVAYD 523
Query: 726 KVVAVAGK-HQVLIFVHSRKETAKTARAIRDTALENDTLGRF----LKEDSVSREILQSH 780
K+ + + +QV++FVHSRKET K+AR A N + F +++D SR ++++
Sbjct: 524 KLSEMIQRGYQVMVFVHSRKETVKSARNFIKLAESNHEVDLFAPDPIEKDKYSRSLVKN- 582
Query: 781 TDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHT 840
+ D+K++ +GF IHHAGM R DR L E +F DG ++VL TATLAWGVNLPA
Sbjct: 583 ----RDKDMKEIFQFGFGIHHAGMARSDRNLTEKMFKDGAIKVLCCTATLAWGVNLPADC 638
Query: 841 VIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSY-GEGIIITGHSELRYYLSLMN 899
VIIKGTQ+Y+ +KG + +L D++Q+ GR GRP + S G GI+ T + L +Y+SL+
Sbjct: 639 VIIKGTQVYDSKKGGFIDLGISDVIQIFGRGGRPGFGSANGTGILCTSNDRLDHYVSLIT 698
Query: 900 QQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLK 959
QQ PIES+F SKL D LNAEI LG+V N EA W+GYTY+++RM +NP YG+ E +
Sbjct: 699 QQHPIESRFGSKLVDNLNAEISLGSVTNVDEAIEWLGYTYMFVRMRKNPFTYGIDWEEIA 758
Query: 960 EDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEH 1019
D L ERR ++ AA L ++ +D S +F DLGR++S +Y+ + ++ +N+
Sbjct: 759 NDPQLYERRRKMIVVAARRLHALQMIVFDEVSMHFIAKDLGRVSSDFYLLNESVEIFNQM 818
Query: 1020 LKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDR-VPIPVKESLEEPSAKINVLL 1078
P + ++ + S+S EF + R++E EL +L D V + L+ P K NVLL
Sbjct: 819 CDPRATEADVLSMISMSSEFDGIKFREEESKELKRLSDESVECQIGSQLDTPQGKANVLL 878
Query: 1079 QAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMW 1138
QAYISQ ++ +L+SD ++ Q++ R+ RALF I + R W + + LN+ K + KR+W
Sbjct: 879 QAYISQTRIFDSALSSDSNYVAQNSVRICRALFLIGVNRRWGKFSNVMLNICKSIEKRLW 938
Query: 1139 SVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPK 1198
+ PL QF+ +P I+ ++ + E +L ELGEL+ K G L+K + +FPK
Sbjct: 939 AFDHPLCQFD-LPENIIRRIRDTKPSMEHLLELEADELGELVHNKKAGSRLYKILSRFPK 997
Query: 1199 LILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKK 1258
+ + A + PIT V+++ + + PDF+WD ++HG + FWV VE++D ILH E F+L +
Sbjct: 998 INIEAEIFPITTNVMRIHIALGPDFVWDSRIHGDAQFFWVFVEESDKSQILHFEKFILNR 1057
Query: 1259 QYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGV 1293
+ + H ++F +P+ +PLPPQ ++VVSD W+G
Sbjct: 1058 RQLNNQHEMDFMIPLSDPLPPQVVVKVVSDTWIGC 1092
Score = 334 bits (857), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 234/758 (30%), Positives = 381/758 (50%), Gaps = 43/758 (5%)
Query: 456 GYEEIHVPAMKH--KPLDPN--EKLIKISEMPEWA--QPAFKGM---TQLNRVQSRVYKS 506
G E H + +H +P + KL+K+ +P A P + + N +Q+ + +
Sbjct: 1091 GCESTHAISFQHLIRPFNETLQTKLLKLRPLPTSALQNPLIESIYPFKYFNPMQTMTFYT 1150
Query: 507 ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566
++ +N + +PTG+GKT VA L I KIVY+APMKALV E
Sbjct: 1151 LYNTNENAFVGSPTGSGKTIVAELAIWHAFK---------TFPGKKIVYIAPMKALVRER 1201
Query: 567 VGNLSNRLQ-MYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVK 625
V + ++ + KV EL+GD + + + I++TTPEK+D I+R R + Q V
Sbjct: 1202 VDDWRKKITPVTGDKVVELTGDSLPDPKDVHDATIVITTPEKFDGISRNWQTRKFVQDVS 1261
Query: 626 LLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLE 685
L+I+DEIHLL +RGP+LE IV+R TK+ +RL+G+S + N D+A +L V +
Sbjct: 1262 LIIMDEIHLLASDRGPILEMIVSRMNYISSQTKQPVRLLGMSTAVSNAYDMAGWLGVK-D 1320
Query: 686 KGLFYFDNSYRPVPLSQQYIGIQ---VKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHS 742
GL+ F +S RPVPL G PL + MN + + + LIFV S
Sbjct: 1321 HGLYNFPSSVRPVPLKMYIDGFPDNLAFCPLMK--TMNKPVFMAIKQHSPDKPALIFVAS 1378
Query: 743 RKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHA 802
R++T TA + D RFL D E LQ + V + LK L +G +HHA
Sbjct: 1379 RRQTRLTALDLIHLCGMEDNPRRFLNIDD--EEELQYYLSQVTDDTLKLSLQFGIGLHHA 1436
Query: 803 GMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPL 862
G+ + DR + LF +Q+L++T+TLAWGVNLPAH VIIKGTQ ++ + + ++
Sbjct: 1437 GLVQKDRSISHQLFQKNKIQILIATSTLAWGVNLPAHLVIIKGTQFFDAKIEGYRDMDLT 1496
Query: 863 DIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVL 922
DI+QM+GRAGRP YD+ G I+ T S+ +Y +N P+ES L D L AEI
Sbjct: 1497 DILQMMGRAGRPAYDTTGTAIVYTKESKKMFYKHFLNVGFPVESSLHKVLDDHLGAEITS 1556
Query: 923 GTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRN 982
G++ N +EA +++ +T+L+ R NP YG+ + ++ E + L+ + L +
Sbjct: 1557 GSITNKQEALDFLSWTFLFRRAHHNPTYYGIEDDTSTAGVS--EHLSSLIDSTLENLRES 1614
Query: 983 NLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYV 1042
V T I+SYYYISH TI + + E+ R SL+ E+ +
Sbjct: 1615 QCVLLHGDD--IVATPFLSISSYYYISHLTIRQLLKQIHDHATFQEVLRWLSLAVEYNEL 1672
Query: 1043 TVRQDEKMELAKLLDRVPIPVKESLE--------EPSAKINVLLQAYISQLKLEGLSLTS 1094
VR E + ++ + V+ + +P K +LLQA++S++ L
Sbjct: 1673 PVRGGEIIMNEEMSQQSRYSVESTFTDEFELPMWDPHVKTFLLLQAHLSRVDLPIADYIQ 1732
Query: 1095 DMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEI 1154
D V + + R+L+A ++ + G+ + + + + + W P+ G+
Sbjct: 1733 DTVSVLDQSLRILQAYIDVASELGYFHTVLTMIKMMQCIKQGYWYEDDPVSVLPGLQ--- 1789
Query: 1155 LMKLEKKDFAWERYYDLSPQE-LGELIRFPKMGRTLHK 1191
L +++ F+ + + +++PQ+ +L+ ++GR +K
Sbjct: 1790 LRRIKDYTFSEQGFIEMTPQQKKKKLLTLEEIGRFGYK 1827
>sp|A2RUV5|HFM1_XENTR Probable ATP-dependent DNA helicase HFM1 OS=Xenopus tropicalis
GN=hfm1 PE=2 SV=1
Length = 1336
Score = 335 bits (858), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 250/773 (32%), Positives = 392/773 (50%), Gaps = 57/773 (7%)
Query: 479 ISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNV---AVLTILQQ 535
++E+P+ + FK N +QS+ + L S N +LCAPTG+GKT + A++ +L Q
Sbjct: 133 VTEIPKQFRTVFKEFPYFNYIQSKALEHLLYSDRNFVLCAPTGSGKTVIFELAIIRLLMQ 192
Query: 536 LALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ-Q 594
+ + +N KIVY+AP+KAL + + + + +EL+GD + +
Sbjct: 193 VPMP--------WTNVKIVYMAPIKALCGQRYDDWKAKFGPVGLNCKELTGDTEMDDLFE 244
Query: 595 IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL-HDNRGPVLESIVAR--TV 651
I+ II+TTPEKWD +TRK D T QLV+L +IDE+H+L +NRG LE +V+R T+
Sbjct: 245 IQHAHIIMTTPEKWDSMTRKWKDNTLVQLVRLFLIDEVHILKEENRGATLEVVVSRMKTI 304
Query: 652 RQIETTKEH------IRLVGLSATLPNYEDVALFLRVNLEKGLFY-FDNSYRPVPLSQQY 704
+ E +R V +SAT+PN ED+A +L G+ D S RPV L +
Sbjct: 305 YSLSHLSEDRKAFIPMRFVAVSATIPNVEDIADWLSDENSPGVCMKMDESSRPVKLRKVV 364
Query: 705 IGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQ----VLIFVHSRKETAKTARAIRDTALEN 760
+G F+ L Y K+ + + L+F +RK + A + A
Sbjct: 365 LGFPCSTKQSEFKFDLTLNY-KIANIIQTYSDGRPTLVFCSTRKGVQQAASILTKDA--- 420
Query: 761 DTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGH 820
+F+ ++ LQ + +K + L+D+L YG HHAG+ DR+++E+ F G
Sbjct: 421 ----KFVMSIE-HKQRLQKCANSIKDSKLRDVLQYGVGYHHAGVDISDRKVIENSFLIGD 475
Query: 821 VQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYG 880
+ VL +T+TLA GVNLPAH VI+K T Y G + E S DI+QM+GRAGRPQ+DS
Sbjct: 476 LPVLFTTSTLAMGVNLPAHLVIVKSTMHY--VSGMFQEYSETDILQMIGRAGRPQFDSTA 533
Query: 881 EGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYL 940
+I+T S Y+ +++ IES L + LNAEI L T+ + K A WI T+L
Sbjct: 534 TAVIMTRLSTKEKYVHMLDGADTIESSLHKHLVEHLNAEIALHTITDVKVALEWIRSTFL 593
Query: 941 YIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLG 1000
YIR L+NPA YG + + + I + + +L L L+K D + F+ T+ G
Sbjct: 594 YIRALKNPAYYGFSEGL--DKIGIEAKLQELCLKNLNDLSSLGLIKMDEEIN-FKPTETG 650
Query: 1001 RIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKL---LD 1057
++ + YYI+ T ++ ++ T EL L S EF V +R +E+ L L +
Sbjct: 651 KLMALYYIAFNTAKLFHT-IRGTETLAELVSLISSCSEFSDVQLRANERRVLNTLNKDKN 709
Query: 1058 RVPI--PVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFE-IV 1114
RV I P++ ++ K+N L+QA++ + ++ SLT D+ I + RL + L E +
Sbjct: 710 RVTIRYPMEGKIKTKEMKVNCLIQAHLGCILVQDFSLTQDISKIFRHGTRLAKCLSEFLA 769
Query: 1115 LKRGWAQLAEKALNLSKMVTKRMWSVQTPL-RQFNGIPNEILMKLEKKDF-AWERYYDLS 1172
L+ AL L+K ++W + + +Q I + + +++ D +
Sbjct: 770 LQENKFSAFLNALILTKCFKSKLWENSSHISKQLEKIGVTLANAMVNAGLTTFKKIEDTN 829
Query: 1173 PQELGELI--RFPKMGRTLHKFVHQFPKL-----ILAAHVQPITRTVLKVELT 1218
+EL ELI R P G + + V PK LA + VL V LT
Sbjct: 830 AREL-ELIVNRHPPFGNQIKESVAHLPKYEIKFQQLAKYRATTAEVVLTVLLT 881
>sp|A2PYH4|HFM1_HUMAN Probable ATP-dependent DNA helicase HFM1 OS=Homo sapiens GN=HFM1 PE=2
SV=2
Length = 1435
Score = 327 bits (839), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 252/767 (32%), Positives = 390/767 (50%), Gaps = 62/767 (8%)
Query: 476 LIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQ 535
L ++E+P + FK N +QS+ + L + N ++CAPTG+GKT V L I +
Sbjct: 261 LKAVTEIPAKFRSIFKEFPYFNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAITRL 320
Query: 536 LALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ-Q 594
L + N KIVY+AP+KAL ++ + + + +EL+GD + +
Sbjct: 321 LM-----EVPLPWLNIKIVYMAPIKALCSQRFDDWKEKFGPIGLNCKELTGDTVMDDLFE 375
Query: 595 IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVAR--TV 651
I+ II+TTPEKWD +TRK D + QLV+L +IDE+H++ D NRGP LE +V+R TV
Sbjct: 376 IQHAHIIMTTPEKWDSMTRKWRDNSLVQLVRLFLIDEVHIVKDENRGPTLEVVVSRMKTV 435
Query: 652 RQIETTKEH------IRLVGLSATLPNYEDVALFLRVNLEKGL-FYFDNSYRPVPLSQQY 704
+ + T ++ +R V +SAT+PN ED+A +L + D S+RPV L +
Sbjct: 436 QSVSQTLKNTSTAIPMRFVAVSATIPNAEDIAEWLSDGERPAVCLKMDESHRPVKLQKVV 495
Query: 705 IGIQVKKPLQRFQLMNDLCYEKVVAV----AGKHQVLIFVHSRKETAKTARAIRDTALEN 760
+G F+ L Y K+ +V + + L+F +RK + A + A
Sbjct: 496 LGFPCSSNQTEFKFDLTLNY-KIASVIQMYSDQKPTLVFCATRKGVQQAASVLVKDA--- 551
Query: 761 DTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGH 820
+F+ ++ LQ + V+ + L+D+L G A HHAGM DR++VE F G
Sbjct: 552 ----KFIMTVE-QKQRLQKYAYSVRDSKLRDILKDGAAYHHAGMELSDRKVVEGAFTVGD 606
Query: 821 VQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYG 880
+ VL +T+TLA GVNLPAH V+IK T Y G + E S DI+QM+GRAGRPQ+D+
Sbjct: 607 LPVLFTTSTLAMGVNLPAHLVVIKSTMHY--AGGLFEEYSETDILQMIGRAGRPQFDTTA 664
Query: 881 EGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYL 940
+I+T S Y+ ++ + +ES L + LNAEIVL T+ + A WI T L
Sbjct: 665 TAVIMTRLSTRDKYIQMLACRDTVESSLHRHLIEHLNAEIVLHTITDVNIAVEWIRSTLL 724
Query: 941 YIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLG 1000
YIR L+NP+ YG A + K+ I + +L L +L+K D F+ T+ G
Sbjct: 725 YIRALKNPSHYGFASGLNKDGIE--AKLQELCLKNLNDLSSLDLIKMDEGVN-FKPTEAG 781
Query: 1001 RIASYYYISHGTIST-YNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKL---L 1056
R+ ++YYI+ T+ Y K T+ D L L + +EF + +R +EK L L
Sbjct: 782 RLMAWYYITFETVKKFYTISGKETLSD--LVTLIAGCKEFLDIQLRINEKKTLNTLNKDP 839
Query: 1057 DRVPI--PVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIV 1114
+R+ I P++ ++ K+N L+QA + + ++ +LT D I + R+ R L + V
Sbjct: 840 NRITIRFPMEGRIKTREMKVNCLIQAQLGCIPIQDFALTQDTAKIFRHGSRITRWLSDFV 899
Query: 1115 L--KRGWAQLAEKALNLSKMVTKRMWS----VQTPLRQF-----NGIPNEILMKLEKKDF 1163
++ +A L +L L+K ++W V L + N I N L +K +
Sbjct: 900 AAQEKKFAVLL-NSLILAKCFRCKLWENSLHVSKQLEKIGITLSNAIVNAGLTSFKKIEE 958
Query: 1164 AWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITR 1210
R +L L R P G + + V PK L V+ ITR
Sbjct: 959 TDARELELI------LNRHPPFGTQIKETVMYLPKYELK--VEQITR 997
>sp|P51979|HFM1_YEAST ATP-dependent DNA helicase MER3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=HFM1 PE=1 SV=3
Length = 1187
Score = 288 bits (738), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 222/705 (31%), Positives = 360/705 (51%), Gaps = 64/705 (9%)
Query: 474 EKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTIL 533
+K + + +P+ + FK T+ N++QS + S S +N ++ +PTG+GKT + L IL
Sbjct: 118 KKCLSTTILPDSFRGVFK-FTEFNKMQSEAFPSIYESNENCIISSPTGSGKTVLFELAIL 176
Query: 534 QQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQT-LTR 592
+ + +D N KI+Y+AP K+L E+ N ++ V L+ D + L
Sbjct: 177 RLIKETNSDTN-----NTKIIYIAPTKSLCYEMYKNWFP--SFVNLSVGMLTSDTSFLET 229
Query: 593 QQIEETQIIVTTPEKWDIITRKSGDRT-YTQLVKLLIIDEIHLLHDNRGPVLESIVARTV 651
++ ++ II+TTPEKWD++TR+ D + +LVKL+++DEIH + + RG LE I+ R
Sbjct: 230 EKAKKCNIIITTPEKWDLLTRRWSDYSRLFELVKLVLVDEIHTIKEKRGASLEVILTR-- 287
Query: 652 RQIETTKEHIRLVGLSATLPNYEDVALFLRVN--LEKGLFYFDNSYRPVPLSQQYIG--I 707
+ T ++IR V LSAT+PN ED+AL+L+ N L + FD SYR V L++ G
Sbjct: 288 --MNTMCQNIRFVALSATVPNIEDLALWLKTNNELPANILSFDESYRQVQLTKFVYGYSF 345
Query: 708 QVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFL 767
K Q+ + N E + A VLIF +R T TA+ + L N +
Sbjct: 346 NCKNDFQKDAIYNSKLIEIIEKHADNRPVLIFCPTRASTISTAKFL----LNNHIFSKSK 401
Query: 768 KEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVST 827
K + + +D + L + + G A HHAG++ DR VE F G + +L ST
Sbjct: 402 KRCN------HNPSDKI----LNECMQQGIAFHHAGISLEDRTAVEKEFLAGSINILCST 451
Query: 828 ATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITG 887
+TLA GVNLPA+ VIIKGT+ +N + E S LD++QM+GRAGRPQ++++G +I+T
Sbjct: 452 STLAVGVNLPAYLVIIKGTKSWNSSE--IQEYSDLDVLQMIGRAGRPQFETHGCAVIMTD 509
Query: 888 HSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRN 947
+ Y +L++ +ES L + L AE L TV + + A NW+ T+ Y+R +N
Sbjct: 510 SKMKQTYENLIHGTDVLESSLHLNLIEHLAAETSLETVYSIETAVNWLRNTFFYVRFGKN 569
Query: 948 PALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKY---DRKSGYFQVTDLGRIAS 1004
PA Y EV + + + +LD LVK D +G ++ T G +
Sbjct: 570 PAAY---QEVNRYVSFHSVEDSQINQFCQYLLD--TLVKVKIIDISNGEYKSTAYGNAMT 624
Query: 1005 YYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEK-----MELAKLLDRV 1059
+YIS ++ + + K + + L + SEEF + VR +EK + L+ LL +
Sbjct: 625 RHYISFESMKQF-INAKKFLSLQGILNLLATSEEFSVMRVRHNEKKLFKEINLSPLL-KY 682
Query: 1060 PIPVKES----LEEPSAKINVLLQAYISQLKL---EGLS-----LTSDMVFITQSAGRLL 1107
P ++ ++ S K+++L+Q + L+ EG S L D + + RLL
Sbjct: 683 PFLTEKKQSQIIDRVSQKVSLLIQYELGGLEFPSYEGASKLHQTLVQDKFLVFRHCFRLL 742
Query: 1108 RALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTP--LRQFNGI 1150
+ + + +++ + L L + + W TP LRQ I
Sbjct: 743 KCMVDTFIEKSDGTSLKNTLFLLRSLNGHCWE-NTPMVLRQLKTI 786
>sp|Q5UYM9|HELS_HALMA Putative ski2-type helicase OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rrnAC2876
PE=3 SV=1
Length = 799
Score = 168 bits (425), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 125/430 (29%), Positives = 210/430 (48%), Gaps = 54/430 (12%)
Query: 482 MPEWAQPAFK--GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALN 539
+PEW + G+ +L Q+ ++ ++ +N++ PT +GKT +A L +L +A
Sbjct: 9 VPEWLPDHLRDDGIEELYPPQAEAVEAGVTEGENLVASIPTASGKTLIAELAMLSSVA-- 66
Query: 540 RNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQ 599
K +Y+ P++AL +E + + Y + + +G+ + +
Sbjct: 67 ---------RGGKALYIVPLRALASEKQADF-EEFEQYGLDIGVSTGNYESEGGWLADKD 116
Query: 600 IIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDN-RGPVLESIVARTVRQIETTK 658
I+V T EK D + R D + + + ++ DE+HL+ D RGP LE +A+ R
Sbjct: 117 IVVATSEKVDSLVRN--DAPWIEDLTCVVTDEVHLVDDGERGPTLEVTLAKLRR----LN 170
Query: 659 EHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL----- 713
++ V LSAT+ N E +A +L L D+ +RP+ L + G+ + L
Sbjct: 171 PDLQTVALSATIGNAEALATWLDAGL------VDSDWRPIDLQK---GVHYGQALHLEDG 221
Query: 714 --QRFQLMNDLCYEKVV---AVAGKHQVLIFVHSRKETAKTARAIRDTAL------ENDT 762
QR + N+ + + L+FV+SR+ A + +T E D
Sbjct: 222 SQQRLSVQNNEKQTAAIVRDTLEDDGSTLVFVNSRRNAEAAAGRLANTVRPHLSTEERDQ 281
Query: 763 LGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQ 822
L +E ++ +D S+DL D + G A HHAG++RG R+LVED F D V+
Sbjct: 282 LADIAEE-------IRDVSDTETSDDLADAVADGAAFHHAGLSRGHRELVEDAFRDRLVK 334
Query: 823 VLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEG 882
V+ +T TLA GVN P+ V+++ + Y+ G LS L++ QM+GRAGRP D YGE
Sbjct: 335 VVCATPTLAAGVNTPSRRVVVRDWRRYDGSAGGMAPLSVLEVHQMMGRAGRPGLDPYGEA 394
Query: 883 III-TGHSEL 891
++I + H E+
Sbjct: 395 VLIASSHDEV 404
>sp|A6UN73|HELS_METVS Putative ski2-type helicase OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=Mevan_0030 PE=3 SV=1
Length = 751
Score = 167 bits (422), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 180/634 (28%), Positives = 310/634 (48%), Gaps = 108/634 (17%)
Query: 492 GMTQLNRVQSRVYKSAL-SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSN 550
G+ +L Q +V + L + N L+C PT +GKT + + +L + D ++N +
Sbjct: 12 GIEELRPPQKKVIEEGLLDKSKNFLICIPTASGKTLIGEMALLNHVL-----DENYNLTG 66
Query: 551 YKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDI 610
K +++ P+KAL +E + + Y +KV GD T++ + + II+TT EK D
Sbjct: 67 KKGLFIVPLKALASEKFDEFQKKYETYGIKVGMSIGDYD-TKEDLSKYNIIITTSEKLDS 125
Query: 611 ITRKSGDRTYTQLVKLLIIDEIHLLHDN-RGPVLESIVARTVRQIETTKEHIRLVGLSAT 669
+ R + + + + + L +IDEIHL+ DN RG LE I+ + ++ I ++VGLSAT
Sbjct: 126 LMRHNIE--WIKDLSLAVIDEIHLIGDNERGGTLEVILTK-LKNINA-----QIVGLSAT 177
Query: 670 LPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQ--------QYIGIQ--VKKPLQRFQLM 719
+ N E++A +L L + +RPV L + YI Q KK + + +
Sbjct: 178 VGNPEEIANWLNAKL------VTDEWRPVELKKGIYLENEINYINNQDSQKKSFKAVKSI 231
Query: 720 --NDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKE------DS 771
N+L V +V K LIF +S++ ++ L ++L + +S
Sbjct: 232 SRNNLTDLIVDSVNEKGSCLIFCNSKRNAVGESKK--------HNLTKYLSKAELNDLNS 283
Query: 772 VSREIL---QSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTA 828
+S EIL ++ T+ KS L + + G A HHAG+T R+ VE+ F + ++V+ T
Sbjct: 284 ISEEILSILETPTETCKS--LSECIKKGVAFHHAGLTYQHRKAVEEGFRNKVIKVICCTP 341
Query: 829 TLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888
TL+ G+NLP II+ + Y+ + ++ L+I Q +GRAGRP D YGEGII+ +
Sbjct: 342 TLSAGLNLPCRRAIIRDIRRYS--QNGLIDIPKLEIHQCIGRAGRPGLDPYGEGIILAKN 399
Query: 889 SE--LRYYLSLMNQQLPIESQFVSKLADQLNAEI-VLGT-----VQNAKEACNWIGYTYL 940
+ + +L+L P+E+ + SKL++Q + +LG +++ E N+I T+
Sbjct: 400 EKDVEKAFLALTG---PLENIY-SKLSNQKVLRVHILGLIATLEIKSTSELINFIKNTF- 454
Query: 941 YIRMLRNPALYGLAP---------------EVLKEDITLGERRADLVHTAATILDRNNLV 985
Y N L+G+ E L +D T + R T+ + NNLV
Sbjct: 455 YAHQYGN--LHGVLTNVSKVVEFLEKNKFIETLDDDFTPKKNRV----LELTLDNSNNLV 508
Query: 986 KYDRK------SGYFQVTDLGRIASYYYI----SHGTISTYNEHLKPTMGDIE------- 1028
++ + F+ T+LG+ S YI S I NE LK + D++
Sbjct: 509 LDSKRRMDTLTNLSFKPTNLGKRVSELYIDPLSSEIIIEGLNE-LKEKINDMDRSNIDQY 567
Query: 1029 LCRLFSLSEEFK-YVTVRQDEKMELAKLLDRVPI 1061
+ + S + E + + V+ DE++EL + +D++ I
Sbjct: 568 IFYIISKATEMRPLLRVKMDEELELIQEMDKLKI 601
>sp|A3MSA1|HELS_PYRCJ Putative ski2-type helicase OS=Pyrobaculum calidifontis (strain JCM
11548 / VA1) GN=Pcal_0078 PE=3 SV=1
Length = 708
Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 138/420 (32%), Positives = 221/420 (52%), Gaps = 38/420 (9%)
Query: 477 IKISEMPEWAQPAF----KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTI 532
+++SE+P A+ +G+ +L Q ++ + ++LLC T +GK+ +A
Sbjct: 1 MEVSELPLDARLIAVLKERGVGRLFPPQVEAVRAGIFDGRSVLLCTATASGKSLLA---- 56
Query: 533 LQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTR 592
+ A+ +G +Y P+KAL E + + S + VKV +GD
Sbjct: 57 -EVAAVKAGLEGRMA------LYAVPLKALAYEKLVHFSYYRGL--VKVGVSTGDFDSDD 107
Query: 593 QQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTV 651
+++ E ++V T EK D + R + + LV ++++DEIH L D RGPVLESIVA+ +
Sbjct: 108 RRLHEFDVVVVTYEKLDSLLRHRPN--WLGLVGVVVVDEIHYLGDPRRGPVLESIVAK-L 164
Query: 652 RQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQ-YIGIQVK 710
R + + I GLSAT+ N +VA +L L ++S+RPVPL + Y G ++
Sbjct: 165 RHLGLKTQFI---GLSATVGNAGEVAAWLGARL------VESSWRPVPLREGVYHGGVIR 215
Query: 711 ---KPLQRFQLMNDLCYEKVV-AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRF 766
+QR D V AVAG Q L+F +SR T + A+A+ + R
Sbjct: 216 FSDGSMQRVNAPGDAEVALAVDAVAGGGQALVFTNSRSSTVRLAKAVAKAMEAAGLVPRG 275
Query: 767 LKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVS 826
K +++ E+L++ + + +L DL+ G A H+AG+ R+LVED F G ++V+VS
Sbjct: 276 AK--ALAEEVLKASSSKIIGRELADLVARGVAFHNAGLELEVRRLVEDGFRRGLLKVVVS 333
Query: 827 TATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT 886
T TLA GVNLPA V++ + ++P G E+ L+ QM GRAGRP D YGE +++
Sbjct: 334 TTTLAAGVNLPARRVVVADYERFDPALGR-EEIPVLEYRQMAGRAGRPGLDPYGEAVLVA 392
>sp|Q3IU46|HELS_NATPD Putative ski2-type helicase OS=Natronomonas pharaonis (strain DSM
2160 / ATCC 35678) GN=NP_0492A PE=3 SV=1
Length = 747
Score = 165 bits (417), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 150/548 (27%), Positives = 258/548 (47%), Gaps = 61/548 (11%)
Query: 478 KISEMPEWAQPAFK--GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQ 535
++S +P W + G+ L Q+ + ++ ++++ PT +GKT VA L +L
Sbjct: 5 EVSGVPPWFADHLREEGIESLYPPQAAAVDAGVADGESLVASVPTASGKTLVAQLAMLS- 63
Query: 536 LALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQI 595
A++R +Y+ P++AL +E + + Y + V +G T + +
Sbjct: 64 -AIDRGG---------TALYIVPLRALASEKREEFAA-FEEYGLSVGVTTGSYEDTGEWL 112
Query: 596 EETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQI 654
+ IIV T EK D + R + + ++ DE+HL+ D +RGP LE +A+ R
Sbjct: 113 ADKDIIVATSEKVDSLVRNGA--PWIDDLDCVVADEVHLVDDEHRGPTLEVTLAKLRR-- 168
Query: 655 ETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQ-----QYI---- 705
++++V LSAT+ N ++A +L L D+S+RP+ L + Q +
Sbjct: 169 --VNPNLQVVALSATVGNAGEMAEWLDAEL------VDSSWRPIELRKGVHYGQALHFGD 220
Query: 706 GIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGR 765
G Q + P+QR + + + + G L+FV+SR+ A+ + T ++
Sbjct: 221 GTQQELPVQRTEKPTEAVVRETLDEGGS--TLVFVNSRRNAEGAAKRLAKTTVDGLDADE 278
Query: 766 FLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLV 825
S++ EI ++ +D S+DL D + G A HHAG + R LVED F D ++ +
Sbjct: 279 RAALSSLAEEI-RAVSDTETSDDLADCVEQGAAFHHAGCSSEHRSLVEDAFRDRLIKTIC 337
Query: 826 STATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885
+T TLA GVN PA V+++ + Y+ + G LS L++ QM+GRAGRP D YGE +++
Sbjct: 338 ATPTLAAGVNTPARRVVVRDWRRYSGDAGGMQPLSVLEVHQMMGRAGRPGRDPYGEAVLL 397
Query: 886 T-GHSELRYYLS--LMNQQLPIESQFVSK--LADQLNAEIVLGTVQNAKEACNWIGYTYL 940
H EL L + P+ES+ + + L A + G + +++ T L
Sbjct: 398 ADSHDELDELLDRYVWADPEPVESKLAREPSMRTHLLATVASGFADSRSALLSFLDRT-L 456
Query: 941 YIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLG 1000
Y R +G + L+ +V T + L+ N + DR + TDLG
Sbjct: 457 YATQYR----HGDGEDNLER----------VVDTTLSYLETNGFI--DRDGDAIEATDLG 500
Query: 1001 RIASYYYI 1008
S Y+
Sbjct: 501 HTVSRLYL 508
>sp|Q9V0A9|HELS_PYRAB Putative ski2-type helicase OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=PYRAB08810 PE=3 SV=1
Length = 715
Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 129/405 (31%), Positives = 209/405 (51%), Gaps = 40/405 (9%)
Query: 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSN 550
+G+ +L Q+ S + +N+L+ PT +GKT +A + I +L ++G
Sbjct: 19 RGIEELYPPQAEALTSGVLEGENLLVAIPTASGKTLIAEIAIANKLL----EEGG----- 69
Query: 551 YKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDI 610
K VY+ P+KAL E + + +KV +GD + + + II+ T EK+D
Sbjct: 70 -KAVYIVPLKALAEEKFREFKD-WERLGLKVAMATGDYDSKDEWLGKYDIIIATAEKFDS 127
Query: 611 ITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669
+ R ++ + VK+L+IDEIHL+ +RG LE I+ + + + + ++GLSAT
Sbjct: 128 LLRHGS--SWIRDVKMLVIDEIHLIGSRDRGATLEFIITQMLGRAQ-------IIGLSAT 178
Query: 670 LPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQ--YIGIQVKK--PLQRFQLMNDLCYE 725
+ N E++A +L L + +RPV L + Y G + +R+ +L Y+
Sbjct: 179 IGNPEELAEWLNAKL------IRSDWRPVKLRKGVFYQGFVFWEDGGSERYNSWEELVYD 232
Query: 726 KVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVK 785
AV L+FV+ R++ KTA + + L R KE RE+ +S +
Sbjct: 233 ---AVKKGKGALVFVNMRRKAEKTALELAKKV--KNYLDR--KELRELRELAESLEENPT 285
Query: 786 SNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKG 845
+ L L G A HHAG+ R +R LVED F G ++V+V+T TL+ G+N PA VII+
Sbjct: 286 NEKLAKALLSGVAFHHAGLGRDERVLVEDNFRKGLIKVVVATPTLSAGINTPAFRVIIRD 345
Query: 846 TQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE 890
T Y+ + + L++ QM+GRAGRP+YD GE II++ E
Sbjct: 346 TWRYS--EFGMERIPVLEVQQMMGRAGRPRYDEVGEAIIVSTTEE 388
>sp|Q97VY9|HELS_SULSO Putative ski2-type helicase OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=SSO2462 PE=1 SV=1
Length = 708
Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 145/447 (32%), Positives = 217/447 (48%), Gaps = 61/447 (13%)
Query: 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSN 550
+G+ +LN Q+ K L + +LL +PTG+GKT +A + I+ L N
Sbjct: 19 RGIKKLNPPQTEAVKKGLLDGNRLLLTSPTGSGKTLIAEMGIISFLLKNGG--------- 69
Query: 551 YKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDI 610
K +YV P++AL E + + KV SGD ++ II+TT EK D
Sbjct: 70 -KAIYVTPLRALTNEKYLTFKD-WESIGFKVAMTSGDYDTDDAWLKNYDIIITTYEKLDS 127
Query: 611 ITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669
+ R D + ++DE+H L+D RGPV+ES+ R R+ L+ LSAT
Sbjct: 128 LWRHRPD--WLNEANYFVLDELHYLNDPERGPVVESVTIRAKRR--------NLLALSAT 177
Query: 670 LPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVV- 728
+ NY+ +A +L G ++RPVPL + + + KK + L D KV
Sbjct: 178 ISNYKQIAKWL------GAEPVATNWRPVPLMEGVMYPERKKK-EYTILFRDNTARKVHG 230
Query: 729 ----------AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQ 778
+++ QVL+F +SRK TA I N L E ++S EIL+
Sbjct: 231 DDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKI-----ANYMNFVSLDEKAIS-EILK 284
Query: 779 SHTDMVKSND-----LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWG 833
D+ + LK L+ G A HHAG+++ R ++E+ F ++V+V+T TLA G
Sbjct: 285 QLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDIIEESFRKRKIKVIVATPTLAAG 344
Query: 834 VNLPAHTVIIKGTQIYNPE-KGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE-- 890
VNLPA TVII +N + G + E+ ++ QM GRAGRP +D GE II+ E
Sbjct: 345 VNLPARTVIIGDIYRFNRKIVGYYDEIPVMEYKQMSGRAGRPGFDQIGESIIVVRDKEDV 404
Query: 891 ----LRYYLSLMNQQLPIESQFVSKLA 913
+Y LS + PIES+ S+ A
Sbjct: 405 DRVFKKYILSDVE---PIESKLGSERA 428
>sp|Q9HMV6|HELS_HALSA Putative ski2-type helicase OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=VNG_2368G PE=3 SV=1
Length = 783
Score = 164 bits (414), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 141/546 (25%), Positives = 247/546 (45%), Gaps = 54/546 (9%)
Query: 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSN 550
+G+ +L Q+ + ++ N++ PT +GKT +A L +L +A D +F+ +
Sbjct: 20 EGVEELYPPQAEAVERGVTEGANLVASVPTASGKTLIAQLAMLSAIA-EGGDSPTFS-GD 77
Query: 551 YKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDI 610
+Y+ P++AL E + + + V +G+ ++ + I+V T EK D
Sbjct: 78 GTALYIVPLRALAGEKAQEFEA-FERFGLSVGVSTGNYERDGARLADNDIVVATSEKVDS 136
Query: 611 ITRKSGDRTYTQLVKLLIIDEIHLLHDN-RGPVLESIVARTVRQIETTKEHIRLVGLSAT 669
+ R + + ++ DE+HL+ D+ RGP LE +A+ +Q+ +++V LSAT
Sbjct: 137 LVRNGA--GWIDDLSCVVADEVHLVDDDHRGPTLEVTLAKLRQQVA----DLQVVALSAT 190
Query: 670 LPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQ-------RFQLMNDL 722
+ N ++A +L L D+ +RP+ L G+ + L + +
Sbjct: 191 VGNAGELAAWLDAEL------VDSDWRPIELR---TGVHYGQSLHYDDGTQAELSVGSGS 241
Query: 723 CYEKVVA--VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSH 780
VVA +A L+FV+SR+ +AR + D + + ++ EI +
Sbjct: 242 QTAAVVADTLADDGSTLVFVNSRRNAEASARRLADVTGNALSSAERERLADIAAEI-RGV 300
Query: 781 TDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHT 840
+D S++L D + G A HHAG+ R R+LVE+ F D V+ + +T TLA GVN PA
Sbjct: 301 SDTETSDELADAVASGAAFHHAGLAREHRELVEEAFRDRLVKAVSATPTLAAGVNTPARR 360
Query: 841 VIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT-GHSELRYYLS--L 897
V+++ Q Y+ G L L++ QM GRAGRP D YGE +++ H EL +
Sbjct: 361 VVVRDWQRYDGTAGGMQPLDVLEVHQMFGRAGRPGLDPYGEAVLLANSHDELEELFDRYV 420
Query: 898 MNQQLPIESQFVSK--LADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAP 955
P+ S+ ++ L + A I G ++G T + L +
Sbjct: 421 YADPEPVRSKLAAEPALRTHVLAAIATGFTTTEDGLHEFLGGTLYATQTDDTGRLRSVTG 480
Query: 956 EVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTIST 1015
+VL+ LDRN V+ R + T G++ S Y+ + +T
Sbjct: 481 DVLR------------------YLDRNGFVE--RDGAALRATATGQLVSRLYVDPMSAAT 520
Query: 1016 YNEHLK 1021
+ L+
Sbjct: 521 IIDGLR 526
>sp|B0R7Q2|HELS_HALS3 Putative ski2-type helicase OS=Halobacterium salinarum (strain ATCC
29341 / DSM 671 / R1) GN=OE_4325F PE=3 SV=1
Length = 783
Score = 164 bits (414), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 141/546 (25%), Positives = 247/546 (45%), Gaps = 54/546 (9%)
Query: 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSN 550
+G+ +L Q+ + ++ N++ PT +GKT +A L +L +A D +F+ +
Sbjct: 20 EGVEELYPPQAEAVERGVTEGANLVASVPTASGKTLIAQLAMLSAIA-EGGDSPTFS-GD 77
Query: 551 YKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDI 610
+Y+ P++AL E + + + V +G+ ++ + I+V T EK D
Sbjct: 78 GTALYIVPLRALAGEKAQEFEA-FERFGLSVGVSTGNYERDGARLADNDIVVATSEKVDS 136
Query: 611 ITRKSGDRTYTQLVKLLIIDEIHLLHDN-RGPVLESIVARTVRQIETTKEHIRLVGLSAT 669
+ R + + ++ DE+HL+ D+ RGP LE +A+ +Q+ +++V LSAT
Sbjct: 137 LVRNGA--GWIDDLSCVVADEVHLVDDDHRGPTLEVTLAKLRQQVA----DLQVVALSAT 190
Query: 670 LPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQ-------RFQLMNDL 722
+ N ++A +L L D+ +RP+ L G+ + L + +
Sbjct: 191 VGNAGELAAWLDAEL------VDSDWRPIELR---TGVHYGQSLHYDDGTQAELSVGSGS 241
Query: 723 CYEKVVA--VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSH 780
VVA +A L+FV+SR+ +AR + D + + ++ EI +
Sbjct: 242 QTAAVVADTLADDGSTLVFVNSRRNAEASARRLADVTGNALSSAERERLADIAAEI-RGV 300
Query: 781 TDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHT 840
+D S++L D + G A HHAG+ R R+LVE+ F D V+ + +T TLA GVN PA
Sbjct: 301 SDTETSDELADAVASGAAFHHAGLAREHRELVEEAFRDRLVKAVSATPTLAAGVNTPARR 360
Query: 841 VIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT-GHSELRYYLS--L 897
V+++ Q Y+ G L L++ QM GRAGRP D YGE +++ H EL +
Sbjct: 361 VVVRDWQRYDGTAGGMQPLDVLEVHQMFGRAGRPGLDPYGEAVLLANSHDELEELFDRYV 420
Query: 898 MNQQLPIESQFVSK--LADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAP 955
P+ S+ ++ L + A I G ++G T + L +
Sbjct: 421 YADPEPVRSKLAAEPALRTHVLAAIATGFTTTEDGLHEFLGGTLYATQTDDTGRLRSVTG 480
Query: 956 EVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTIST 1015
+VL+ LDRN V+ R + T G++ S Y+ + +T
Sbjct: 481 DVLR------------------YLDRNGFVE--RDGAALRATATGQLVSRLYVDPMSAAT 520
Query: 1016 YNEHLK 1021
+ L+
Sbjct: 521 IIDGLR 526
>sp|Q974S1|HELS_SULTO Putative ski2-type helicase OS=Sulfolobus tokodaii (strain DSM
16993 / JCM 10545 / NBRC 100140 / 7) GN=STK_05900 PE=3
SV=1
Length = 704
Score = 164 bits (414), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 144/445 (32%), Positives = 214/445 (48%), Gaps = 58/445 (13%)
Query: 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSN 550
+G+ LN QS + L +L+ +PT +GKT +A L ++ L L++
Sbjct: 22 RGIRTLNPPQSEAIRKGLLDGKRLLVTSPTASGKTLIAELGMINYL-LSKGG-------- 72
Query: 551 YKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDI 610
K +Y+ P++AL E + + +K SGD +E IIVTT EK D
Sbjct: 73 -KAIYITPLRALTNEKYNTFKD-WETLGIKTGMTSGDYDTDDAWLENYDIIVTTYEKLDS 130
Query: 611 ITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669
+ R + V ++DE H L+D RGP +ES+ R K+ ++GLSAT
Sbjct: 131 LWRHKA--KWLNEVSYFVLDEFHYLNDPERGPTVESVAIRA-------KKRGIVLGLSAT 181
Query: 670 LPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYI-----GIQV--KKPLQRFQLMNDL 722
+ N +++A +L L ++RPVPL + I G V K R +D
Sbjct: 182 ISNGKEIANWLNAEL------VATNWRPVPLKEGIIYPEKKGFVVVYKDNTSRKVYGDDA 235
Query: 723 CYEKVVAVAGKH-QVLIFVHSRKETAKTARAIRD----TALENDTL---GRFLKE--DSV 772
+ + K QVL+F SRK TAR I LE+ L R +KE D+
Sbjct: 236 IIAYTLDIVSKGGQVLVFRSSRKLAENTARKIVQYMNFVKLEDKKLLEIARKIKEVEDAG 295
Query: 773 SREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAW 832
S E DL +L+ G A HHAG+++G R ++E F D ++V+V+T TLA
Sbjct: 296 SNE----------KEDLYNLVLRGVAYHHAGLSKGLRDIIESSFRDRILKVIVATPTLAA 345
Query: 833 GVNLPAHTVIIKGTQIYNPEKGAWTELSP-LDIMQMLGRAGRPQYDSYGEGIIITGH--- 888
GVNLPA V+I YN + + +L P +D QM GRAGRP +D GE +++ +
Sbjct: 346 GVNLPARAVVIGDIYRYNRKVVGYMDLIPVMDYKQMSGRAGRPGFDENGEAVVVVRNKRE 405
Query: 889 SELRYYLSLMNQQLPIESQFVSKLA 913
+E Y LM+ PIES+ S+ A
Sbjct: 406 AEKVYERYLMSDVEPIESKLGSESA 430
>sp|Q97AI2|HELS_THEVO Putative ski2-type helicase OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=TV0828 PE=3 SV=1
Length = 674
Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 126/378 (33%), Positives = 191/378 (50%), Gaps = 49/378 (12%)
Query: 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572
NI++ PT AGKT +A I + K +Y+ P+++L E LS
Sbjct: 39 NIMVSVPTAAGKTLIAYSAIYETF-----------KKKLKSIYIVPLRSLAMEKYEELS- 86
Query: 573 RLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEI 632
RL+ ++V+ G+ T I+ +++ T EK D + D + V L++IDEI
Sbjct: 87 RLRELGMRVKLSIGNYDDTPDFIKRYDVVILTSEKADSLMHH--DPYMMEEVGLMVIDEI 144
Query: 633 HLLHDN-RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYF 691
H++ D RGP LE+++ T R + R++ LSAT+ N ++A +L +L K
Sbjct: 145 HMIGDEYRGPTLETVIT-TARYVNP---ETRIIALSATVSNASEIAEWLNASLIK----- 195
Query: 692 DNSYRPVPLSQQYIGIQVKKPL-----QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKET 746
+S+RPVPL +GI + L R + +L ++ V G QVLIFV SRK
Sbjct: 196 -SSFRPVPLK---VGILYRNRLFLDGDARSDVDINLLVKETVDDGG--QVLIFVSSRKRA 249
Query: 747 AKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTR 806
A+ + L + + VS E + D+ L ++LP+G + HHAG++
Sbjct: 250 EDMAKNL-------SQLFDPINDLKVSSEDANVYDDL-----LNEMLPHGVSFHHAGLSN 297
Query: 807 GDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQ 866
R +E F ++V+V+T TLA GVNLPA VI+K Y T LS +++ Q
Sbjct: 298 EQRSFIEKAFRHRKLKVIVATPTLAAGVNLPARLVIVKDVTRYG--DLGITYLSNMEVKQ 355
Query: 867 MLGRAGRPQYDSYGEGII 884
M+GRAGRP YD YG GII
Sbjct: 356 MIGRAGRPGYDQYGIGII 373
>sp|O59025|HELS_PYRHO Putative ski2-type helicase OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=PH1280 PE=3 SV=1
Length = 715
Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 143/490 (29%), Positives = 243/490 (49%), Gaps = 54/490 (11%)
Query: 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSN 550
+G+++L Q+ S + +N L+ PT +GKT +A + I+ +L +G
Sbjct: 19 RGISELYPPQAEALTSGILKGENALIAIPTASGKTLIAEIAIVNRLL----KEGG----- 69
Query: 551 YKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDI 610
K VY+ P+KAL E + ++ +KV +GD + + II+ T EK+D
Sbjct: 70 -KAVYLVPLKALAEEKFKEFKDWEEL-GLKVAMATGDYDSKDEWLGGYDIIIATAEKFDS 127
Query: 611 ITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669
+ R ++ + VK+L++DEIHL+ +RG LE I+ + + + + ++GLSAT
Sbjct: 128 LLRHGS--SWIRNVKVLVVDEIHLIGSRDRGATLEFIITQMLNRAQ-------IIGLSAT 178
Query: 670 LPNYEDVALFLRVNLEKGLFYFDNSYRPVPLS-----QQYIGIQVKKPLQRFQLMNDLCY 724
+ N E++A +L L K + +RPV L Q ++ + K ++F +L Y
Sbjct: 179 IGNPEELAEWLNAKLIK------SDWRPVKLRRGVFYQGFVFWEDGKT-EKFNSWEELVY 231
Query: 725 EKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMV 784
+ + G L+FV+ R++ KTA + + N + L+E +E+ +S +
Sbjct: 232 DAIKRSKGS---LVFVNMRRKAEKTALEL-SKKIRNFLTKKELRE---LKELAESLEENP 284
Query: 785 KSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIK 844
+ L L G A HHAG+ R +R LVE+ F G ++V+V+T TL+ G+N PA VI++
Sbjct: 285 TNEKLAKALQGGVAFHHAGLGREERVLVEENFKKGLIKVVVATPTLSAGINTPAFRVIVR 344
Query: 845 GTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPI 904
T Y+ + + L+I QM+GRAGRP+YD GE II++ E + + P
Sbjct: 345 DTWRYS--EFGMERIPILEIQQMMGRAGRPKYDEVGEAIIVSTTEEPSTVMERYIKGKP- 401
Query: 905 ESQFVSKLADQLNAEIVL-GTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDIT 963
KL QL+ E +L G + N+ + +Y + R Y K+ T
Sbjct: 402 -----EKLFSQLSNESILRGQILALIATFNFSSFREIYDFLERTFYAYQ-----GKDPYT 451
Query: 964 LGERRADLVH 973
L +R D+V+
Sbjct: 452 LEDRIRDIVY 461
>sp|Q9YFQ8|HELS_AERPE Putative ski2-type helicase OS=Aeropyrum pernix (strain ATCC 700893
/ DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=APE_0191.1
PE=3 SV=2
Length = 735
Score = 161 bits (407), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 133/429 (31%), Positives = 211/429 (49%), Gaps = 63/429 (14%)
Query: 481 EMPEWAQPAFKGMTQLNRV------QSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQ 534
++P WA + + +L V Q ++ + +N+++ APTG+GKT +A++ I+
Sbjct: 7 DIPSWATTETRTLAKLAGVERLFEPQYMALQAGVEKGENLVVAAPTGSGKTFIALVAIVN 66
Query: 535 QLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ 594
LA + + Y+ P+K++ E + S L +K++ GD R+
Sbjct: 67 SLA----------RAGGRAFYLVPLKSVAYEKYTSFSI-LSRMGLKLKISVGD---FREG 112
Query: 595 IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQ 653
E +++ T EK+D + R S + + V +LI+DEIH + D RGP+LESIV+R +
Sbjct: 113 PPEAPVVIATYEKFDSLLRVSP--SLARNVSVLIVDEIHSVSDPKRGPILESIVSRML-- 168
Query: 654 IETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVK--- 710
+ +LVGLSAT+PN ++A ++ G ++S+RPVPL ++Y+ + K
Sbjct: 169 --ASAGEAQLVGLSATVPNAGEIAEWI------GGKIVESSWRPVPL-REYVFKEYKLYS 219
Query: 711 -----KPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGR 765
+ + R + DL A+ Q L+F +SR+ RA+ LGR
Sbjct: 220 PTGGLREVPRVYGLYDLDL-AAEAIEDGGQALVFTYSRR------RAVTLAKRAAKRLGR 272
Query: 766 FLKEDSVSREILQSHTDMVKSN--------DLKDLLPYGFAIHHAGMTRGDRQLVEDLFG 817
L SRE + ++ +L L+ G A HHAG+ R+ VE+ F
Sbjct: 273 RLS----SREARVYSAEASRAEGAPRSVAEELASLIAAGIAYHHAGLPPSLRKTVEEAFR 328
Query: 818 DGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD 877
G V+V+ ST TLA GVNLPA V+I Y E G + + QM GRAGRP D
Sbjct: 329 AGAVKVVYSTPTLAAGVNLPARRVVID--SYYRYEAGFREPIRVAEYKQMAGRAGRPGLD 386
Query: 878 SYGEGIIIT 886
+GE II+
Sbjct: 387 EFGEAIIVA 395
>sp|Q4JC00|HELS_SULAC Putative ski2-type helicase OS=Sulfolobus acidocaldarius (strain
ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB
11770) GN=Saci_0263 PE=3 SV=1
Length = 705
Score = 155 bits (393), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 128/417 (30%), Positives = 207/417 (49%), Gaps = 58/417 (13%)
Query: 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSN 550
+G+ +LN Q+ K L +L+ PT +GKT +A L ++ L LN+
Sbjct: 22 RGIKKLNPPQTEAVKKGLIEDKRLLITTPTASGKTLMAELGMISHL-LNKGG-------- 72
Query: 551 YKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDI 610
K +YV P++AL +E + + KV SGD + IIVTT EK D
Sbjct: 73 -KAIYVTPLRALTSEKYSTFKD-WEKLGFKVGVTSGDYDTDDPWLRNFDIIVTTYEKLDS 130
Query: 611 ITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669
+ R S + + + + ++DE H ++D +RGPV+E + R RQ ++ LSAT
Sbjct: 131 LWRHSAE--WLKDIDYFVLDEFHYMNDGDRGPVVEGVAVRAKRQGT-------ILALSAT 181
Query: 670 LPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEK--- 726
+ N +DVA +L ++ ++RPVPL + + + KK L +D K
Sbjct: 182 IGNAKDVAKWLNADI------VATNWRPVPLKEGVMYSEGKK--GHIILYSDGTTNKLKG 233
Query: 727 ---VVA-----VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQ 778
++A ++ QV++F SRK TA I F+K D +++L+
Sbjct: 234 DDPIIAYTLDILSKGGQVIVFRSSRKYAETTAMKISQYM-------NFVKLDD--KKLLE 284
Query: 779 SHTDMVKSND--------LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATL 830
+ + + D L +L+ G A HHAG+++G R ++E F + ++V+ +T TL
Sbjct: 285 TAERIKEVEDAGSNEKEVLYNLIVRGVAFHHAGLSKGLRDIIEASFRERIIKVITATPTL 344
Query: 831 AWGVNLPAHTVIIKGTQIYNPEKGAWTEL-SPLDIMQMLGRAGRPQYDSYGEGIIIT 886
A GVNLPA V+I +N + +TE+ S ++ QM GRAGRP YD++GE II+
Sbjct: 345 AAGVNLPARAVVIGDIYRFNRKIVGFTEMISTMEYRQMSGRAGRPGYDNHGEAIILV 401
>sp|A8MB76|HELS_CALMQ Putative ski2-type helicase OS=Caldivirga maquilingensis (strain
ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)
GN=Cmaq_0318 PE=3 SV=1
Length = 756
Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 123/405 (30%), Positives = 206/405 (50%), Gaps = 35/405 (8%)
Query: 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSN 550
+G+ L Q ++ L + +NIL+ + T +GKT +A + + + +N +
Sbjct: 20 RGIRTLYPPQEEAIRAGLLNGENILMVSATASGKTLLAEVAAVNNVLVN----------D 69
Query: 551 YKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDI 610
K + P+KAL E + + N ++V +GD + + +I+TT EK D
Sbjct: 70 KKSLVAVPLKALAFEKLNDF-NTYSELGIRVAASTGDYNSEDKWLGSYDVIITTYEKLDS 128
Query: 611 ITRKSGDRTYTQLVKLLIIDEIHLLHDN-RGPVLESIVARTVRQIETTKEHIRLVGLSAT 669
+ R + V LIIDEIH ++D+ RGP++ESIVA+ +R + + ++GLSAT
Sbjct: 129 LLRLKPSWIWN--VGQLIIDEIHFINDDERGPIIESIVAK-LRMLNLNPQ---IIGLSAT 182
Query: 670 LPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQ----QYIGIQVKKPLQRFQLMND-LCY 724
+ N E++A +L L K + +RPV L + + + V +R D L
Sbjct: 183 IGNPEELANWLNAKLVK------SDWRPVSLREGVYHKGVVTYVNDGEKRISGQGDSLIN 236
Query: 725 EKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFL---KEDSVSREILQSHT 781
V + QVL+F SR+ + AR + + + R++ + ++ E+ ++ +
Sbjct: 237 LTVDTLNDGGQVLVFSSSRQGAVRIARKLAEYICSSPV--RYIDPGEAGKLAEEVRETSS 294
Query: 782 DMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTV 841
+ + +L L+ G + HHAG+ R+++E+ F G ++VL ST TLA GVNLPA V
Sbjct: 295 SRILAEELTGLIKCGVSFHHAGLELEVRRVIEEGFRRGVLRVLASTTTLAAGVNLPARRV 354
Query: 842 IIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT 886
I+ + Y P G + E+ ++ QM GRAGRP D YGE III
Sbjct: 355 IVNEYRRYEPGYG-FIEIPVMEYKQMAGRAGRPGLDPYGEAIIIV 398
>sp|Q9HJX7|HELS_THEAC Putative ski2-type helicase OS=Thermoplasma acidophilum (strain
ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta0835 PE=3 SV=1
Length = 674
Score = 154 bits (389), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 126/386 (32%), Positives = 192/386 (49%), Gaps = 65/386 (16%)
Query: 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572
N+++ PT AGKT +A I + N K +Y+ P+++L E LS
Sbjct: 39 NVVVSVPTAAGKTLIAYSAIYETF-----------QRNLKSIYIVPLRSLAMEKFSELS- 86
Query: 573 RLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEI 632
RL+ +KV+ GD + I+ ++ T EK D + D V LL++DEI
Sbjct: 87 RLRDLGLKVKMSIGDYDDSPDFIKRYDAVILTSEKADSLLHH--DPYILNDVGLLVLDEI 144
Query: 633 HLLHD-NRGPVLESI--VARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLF 689
H + D +RGP LE++ +AR V +R++ LSAT+ N ++A +L +L K
Sbjct: 145 HTIGDESRGPTLETVASIARYV------NPDVRILALSATVSNAMELASWLDASLIK--- 195
Query: 690 YFDNSYRPVPLSQQYIGIQVKKPLQRFQLMND------LCYEKVV--AVAGKHQVLIFVH 741
+ +RPVPL GI L R QL D + +++ V QVL+FV
Sbjct: 196 ---SDFRPVPLKT---GI-----LYRDQLYLDGKRRSGVSINQIIRETVEDNGQVLMFVS 244
Query: 742 SRKETAKTARAIRDTALENDTLGRFLKEDS---VSREILQSHTDMVKSNDLKDLLPYGFA 798
SRK+ TAR L + D+ +S + + DM L ++LP G A
Sbjct: 245 SRKKAEDTAR----------DLAQIFGSDANIKISSDETNVYDDM-----LNEILPRGVA 289
Query: 799 IHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTE 858
HHAG++ R +E F ++V+V+T TLA GVNLPA VI++ + + ++
Sbjct: 290 FHHAGLSNDQRAFIEREFRARRIKVIVATPTLAAGVNLPARLVIVRDITRWGSDGISY-- 347
Query: 859 LSPLDIMQMLGRAGRPQYDSYGEGII 884
L+ ++I QM+GRAGRP YD YG G+I
Sbjct: 348 LTNMEIKQMIGRAGRPGYDQYGIGLI 373
>sp|A7IB61|HELS_METB6 Putative ski2-type helicase OS=Methanoregula boonei (strain 6A8)
GN=Mboo_2458 PE=3 SV=1
Length = 723
Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 130/419 (31%), Positives = 203/419 (48%), Gaps = 67/419 (15%)
Query: 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNY 551
G+ +L Q+ + L N+L+ PT +GKT +A + + + +A +
Sbjct: 20 GIRELYPPQAACVERGLLDGKNLLVAIPTASGKTLIAEMAMHRHIA-----------NGG 68
Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDII 611
K +Y+ P+KAL +E N+ VKV +GD + + IIV T EK D +
Sbjct: 69 KCLYIVPLKALASEKYEEFGNK----GVKVGLSTGDLDRRDDALGKNDIIVATSEKVDSL 124
Query: 612 TRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670
R +G R + + L++IDEIHL+ +RGP LE ++A+ + + ++L+GLSAT+
Sbjct: 125 LR-NGAR-WIPDITLVVIDEIHLIDSPDRGPTLEMVIAK----MRSKNPGMQLIGLSATI 178
Query: 671 PNYEDVALFL----------RVNLEKGLFY-----FDNSYRPVPLSQQYIGIQVKKPLQR 715
N + +A +L V+L +G+FY F RPV QV K
Sbjct: 179 GNPKVLAGWLDAELVTSSWRPVDLRQGVFYDNRIQFAERMRPVK--------QVSKNYDD 230
Query: 716 FQLMNDLCYEKVVAVAGKHQVLIFVHSRKET-AKTARAIRDTALENDTLGRFLKEDSVSR 774
L D +A Q L+FV SR+ A RA E+ L R
Sbjct: 231 LNLCLD-------TIAEGGQCLVFVSSRRNAEAFAKRAAGAIKSEDAALA-----ACAER 278
Query: 775 EILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGV 834
+ + T+MVK+ L + G A HHAG++R +R +VE+ F ++ + ST TLA G+
Sbjct: 279 LLEGTPTEMVKT--LAACVAKGAAFHHAGLSRKERSIVEEAFRKNLLKCISSTPTLAAGL 336
Query: 835 NLPAHTVIIKGTQIYNPEKGAWTELSPLDIM---QMLGRAGRPQYDSYGEGIIITGHSE 890
NLPA VII+ ++ +G + P+ + QM GRAGRP+ D YGE ++I +E
Sbjct: 337 NLPARRVIIRDYLRFSAGEG----MQPIPVSEYRQMAGRAGRPRLDPYGEAVLIAKEAE 391
>sp|O73946|HELS_PYRFU Putative ski2-type helicase OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF0677 PE=1 SV=1
Length = 720
Score = 150 bits (379), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 153/540 (28%), Positives = 253/540 (46%), Gaps = 68/540 (12%)
Query: 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSN 550
+G+ Q+ KS + N L+ PT +GKT +A + ++ ++
Sbjct: 19 RGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGG--------- 69
Query: 551 YKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDI 610
K VY+ P+KAL E + + ++V +GD + + + II+ T EK+D
Sbjct: 70 -KAVYIVPLKALAEEKFQEFQD-WEKIGLRVAMATGDYDSKDEWLGKYDIIIATAEKFDS 127
Query: 611 ITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669
+ R ++ + VK+L+ DEIHL+ +RG LE I+A + + + ++GLSAT
Sbjct: 128 LLRHGS--SWIKDVKILVADEIHLIGSRDRGATLEVILAHMLGKAQ-------IIGLSAT 178
Query: 670 LPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQ--YIGIQVKK--PLQRFQLMNDLCYE 725
+ N E++A +L L + +RPV L + Y G + + RF +L Y+
Sbjct: 179 IGNPEELAEWLNAEL------IVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYD 232
Query: 726 KVVAVAGKHQVLIFVHSRKETAKTARAI--RDTALENDTLGRFLKEDSVSREILQSHTDM 783
A+ K LIFV+ R++ + A + + +L R L E + S E ++ +
Sbjct: 233 ---AIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKL 289
Query: 784 VKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVII 843
K+ + G A HHAG+ R +R LVE+ F G ++ +V+T TL+ G+N PA VII
Sbjct: 290 AKA------IRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVII 343
Query: 844 KGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR----YYLSLMN 899
+ I+ + +++ QMLGRAGRP+YD GEGII++ + R +Y+
Sbjct: 344 R--DIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKP 401
Query: 900 QQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYT-YLYIR--------MLRNPAL 950
++L + S L Q+ A I +E +I T Y Y R +RN
Sbjct: 402 EKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRKDTYSLEEKIRNILY 461
Query: 951 YGLAPEVLK---ED----ITLGERRADLV---HTAATILDR-NNLVKYDRKSGYFQVTDL 999
+ L E ++ ED ++LG R A L +TA D+ +VK G F + L
Sbjct: 462 FLLENEFIEISLEDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISL 521
>sp|O75417|DPOLQ_HUMAN DNA polymerase theta OS=Homo sapiens GN=POLQ PE=1 SV=2
Length = 2590
Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 134/483 (27%), Positives = 225/483 (46%), Gaps = 80/483 (16%)
Query: 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572
N++ APT AGKT VA L IL+++ R K +++ P ++ E L +
Sbjct: 110 NLVYSAPTSAGKTLVAELLILKRVLEMRK----------KALFILPFVSVAKEKKYYLQS 159
Query: 573 RLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEI 632
Q +KV G + +R I V T E+ + + + + L+ ++++DE+
Sbjct: 160 LFQEVGIKVDGYMGSTSPSRH-FSSLDIAVCTIERANGLINRLIEENKMDLLGMVVVDEL 218
Query: 633 HLLHDN-RGPVLESIVARTV---RQIETTK--------EHIRLVGLSATLPNYEDVALFL 680
H+L D+ RG +LE ++ + R+ + + +++VG+SATLPN E VA +L
Sbjct: 219 HMLGDSHRGYLLELLLTKICYITRKSASCQADLASSLSNAVQIVGMSATLPNLELVASWL 278
Query: 681 RVNLEKGLFYFDNSYRPVPLSQQY-IGIQV----KKPLQRFQLM----------NDLCYE 725
L + +RPVPL + +G + K ++ F+ M LCYE
Sbjct: 279 NAEL------YHTDFRPVPLLESVKVGNSIYDSSMKLVREFEPMLQVKGDEDHVVSLCYE 332
Query: 726 KVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVK 785
+ H VL+F S+K K A I L + S ++ ++++
Sbjct: 333 ---TICDNHSVLLFCPSKKWCEKLADIIAREFYNLHHQAEGLVKPSECPPVILEQKELLE 389
Query: 786 SND------------LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWG 833
D L+ +P+G A HHAG+T +R ++E F G ++VL +T+TL+ G
Sbjct: 390 VMDQLRRLPSGLDSVLQKTVPWGVAFHHAGLTFEERDIIEGAFRQGLIRVLAATSTLSSG 449
Query: 834 VNLPAHTVIIKGTQIYNPEKGAWTELSPLDIM---QMLGRAGRPQYDSYGEGIIITGHSE 890
VNLPA VII+ T I+ PLDI+ QM+GRAGR D+ GE I+I +SE
Sbjct: 450 VNLPARRVIIR-TPIFGGR--------PLDILTYKQMVGRAGRKGVDTVGESILICKNSE 500
Query: 891 LRYYLSLMNQQL-PIESQFVSKLADQLNA-------EIVLGTV-QNAKEACNWIGYTYLY 941
++L+ L P+ S + +++ EI++G V +++ + T+L
Sbjct: 501 KSKGIALLQGSLKPVRSCLQRREGEEVTGSMIRAILEIIVGGVASTSQDMHTYAACTFLA 560
Query: 942 IRM 944
M
Sbjct: 561 ASM 563
>sp|O26901|HELS_METTH Putative ski2-type helicase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_810 PE=3 SV=1
Length = 690
Score = 143 bits (360), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 135/490 (27%), Positives = 232/490 (47%), Gaps = 70/490 (14%)
Query: 481 EMPEWAQPAFKGMTQLNRVQ-SRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALN 539
EM + + + +LN Q S + L S DN ++ PT +GKT + ++ L+ +
Sbjct: 7 EMRQILGDCYPHIRELNPAQRSAIEAGYLESEDNYIIAIPTASGKTLLGIIAALKTVM-- 64
Query: 540 RNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQ 599
+G +++Y P+ ++ E + +L+ + ++V G T +
Sbjct: 65 ---EGG------RVIYTVPLLSIQNEKIKEF-RKLEEHGIRV----GKDPRT------SD 104
Query: 600 IIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTK 658
I V E +D +TR S + + V LLI+DE H++ + RGPV+ES + R T
Sbjct: 105 IAVMVFESFDSLTRFSWN--ILREVDLLIVDEFHMIGEYTRGPVIESAITRA----RTLN 158
Query: 659 EHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQL 718
+R+V LSATL N +++A +L + ++ YRPVPL ++ + ++ ++
Sbjct: 159 PSVRIVALSATLSNMDEIAGWLDARV------VEHDYRPVPLHREVLDTEMFGVREK--- 209
Query: 719 MNDLCYEKVV--AVAGKHQVLIFVHSRKETAKTARAIRDT---ALENDTLGRFLKEDSVS 773
ND+ KV+ ++ Q L FV +R+ T A + D + +D + F +
Sbjct: 210 -NDVVL-KVLERSLEDGSQTLAFVSTRRFTESLASHLADKISGKIPDDMVESFREVAGKV 267
Query: 774 REILQSHTDMVKSNDLK--DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLA 831
E+ +S S LK + L G A HHAG+ R+++ED F DG++ ++ +T +L
Sbjct: 268 LEVPKSRGSPPTSTCLKLAECLEAGIAFHHAGLFNRQREIIEDEFRDGNILMITATPSLM 327
Query: 832 WGVNLPAHTVIIKGTQIYNPEKGAWTELSP-----LDIMQMLGRAGRPQYDSYGEGIIIT 886
+GVNLP+ TV+I+ + WT P D QM GRAGRPQYD G +I
Sbjct: 328 YGVNLPSRTVVIR-------DYTRWTSQGPRRIPVFDYEQMSGRAGRPQYDDAGYSYLIA 380
Query: 887 -GHSEL----RYYLSLMNQQLP---IESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYT 938
H E YY+ ++ IE++ L Q+ A++ G +E ++ T
Sbjct: 381 RSHDEAMDLEEYYIRGEVERTTSRIIENR--DALYRQIIAQVASGLSGTTEELADFFRNT 438
Query: 939 YLYIRMLRNP 948
+ +M+ P
Sbjct: 439 FYGYQMVEGP 448
>sp|Q465R3|HELS_METBF Putative ski2-type helicase OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=Mbar_A3508 PE=3 SV=1
Length = 729
Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 117/404 (28%), Positives = 200/404 (49%), Gaps = 40/404 (9%)
Query: 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNY 551
G+ +L Q+ + L N+L PT +GKT +A L +L+ + +
Sbjct: 20 GIMELYPPQAEAVEKGLLEGRNLLAAIPTASGKTLLAELAMLKSIL-----------AGG 68
Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDII 611
K +Y+ P++AL +E ++ ++V +GD L + + IIV T EK D +
Sbjct: 69 KALYIVPLRALASEKFRRFREFSEL-GIRVGISTGDYDLRDEGLGVNDIIVATSEKTDSL 127
Query: 612 TRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670
R + + Q + +++ DE+HL+ +RGP LE +A+ +R++ + +++ LSAT+
Sbjct: 128 LRN--ETVWMQEISVVVADEVHLIDSPDRGPTLEVTLAK-LRKMNPS---CQILALSATV 181
Query: 671 PNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAV 730
N +++A++L L + +RP L + R + + ++ V +
Sbjct: 182 GNADELAVWLEAEL------VVSEWRPTELLEGVFFNGTFYCKDREKTVEQSTKDEAVNL 235
Query: 731 A-----GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQ-SHTDMV 784
A Q L+F SRK A+ T + + ++ EIL+ S TD
Sbjct: 236 ALDTLKKDGQCLVFESSRKNCMAFAKKAASTVKKTLSAEDRNALAGIADEILENSETDT- 294
Query: 785 KSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIK 844
S +L + G A HHAG+T R+LVED F G ++++ ST TLA G+NLPA VII+
Sbjct: 295 -STNLAVCIRSGTAFHHAGLTTPLRELVEDGFRAGRIKLISSTPTLAAGLNLPARRVIIR 353
Query: 845 GTQIYNPEKGAWTELSPLDIM---QMLGRAGRPQYDSYGEGIII 885
+ Y+ E G + P+ ++ QM GRAGRP+ D YGE +++
Sbjct: 354 NYRRYSSEDG----MQPIPVLEYKQMAGRAGRPRLDPYGEAVLV 393
>sp|Q0W6L1|HELS_UNCMA Putative ski2-type helicase OS=Uncultured methanogenic archaeon RC-I
GN=UNCMA_22030 PE=3 SV=1
Length = 740
Score = 141 bits (355), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 149/595 (25%), Positives = 264/595 (44%), Gaps = 103/595 (17%)
Query: 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNY 551
G+ +L Q+ + L N+L PT +GKT +A + +L+ +A
Sbjct: 20 GIPELYPPQAEAIRQGLLDGKNLLAAIPTASGKTLLAEMAMLKSIA-----------EGG 68
Query: 552 KIVYVAPMKALVAEVVGNL--SNRLQMY--DVKVRELSGDQTLTRQQIEETQIIVTTPEK 607
K +Y+ P+KAL +E ++L + VKV +GD + + E IIV T EK
Sbjct: 69 KAIYIVPLKALASEKYDRFLEFSKLPIKPDGVKVGIATGDFDSRDEYLGEKDIIVATSEK 128
Query: 608 WDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGL 666
D + R ++ + +++ DE+HL+ NRGP LE +A+ +R+I +++++ L
Sbjct: 129 TDSLLRNGA--SWLSGLSVVVADEVHLIDSPNRGPTLEVTLAK-LRKINV---NLQILAL 182
Query: 667 SATLPNYEDVALFLR----------VNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRF 716
SAT+ N + +A ++ L++G+FY R + ++ + P +
Sbjct: 183 SATIGNAKALAKWMDAALVQSEWRPTTLKEGVFY----GRAITFKKEKRTVNNAGPDEVN 238
Query: 717 QLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDT------ALENDTLGRFLKED 770
L+ D E Q L+F ++RK + A+ + + E + L + LK+D
Sbjct: 239 SLVADTLEEG-------GQCLVFANTRKSSESIAQKVARSLSKKLQPAEKEQLAK-LKQD 290
Query: 771 SVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATL 830
+ H + L + + G A HHAG+ R++VED F ++V+ T TL
Sbjct: 291 VLR------HAETDTCEKLAECVGNGVAFHHAGLKGEHRRIVEDGFRQNILKVIACTPTL 344
Query: 831 AWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE 890
A G+NLPA VII+ + ++ G+ + L+ QM GRAGRP+ D YGE ++I + +
Sbjct: 345 AAGLNLPARRVIIRDYKRFDVNYGS-VPIPVLEYKQMAGRAGRPRLDPYGEAVLIAKNYD 403
Query: 891 LRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPAL 950
+F + + +NA+ T + E +R AL
Sbjct: 404 ----------------EFGELMENYINADPEHITSKLGTEPA------------MRAHAL 435
Query: 951 YGLAPEVLKE--------DIT-LGERRADLVHTAATILD---RNNLVKYDRKSGYFQVTD 998
+A + + D T +R DL H +L+ N++ + K G + TD
Sbjct: 436 SAVATDFCRSRQDLKAFMDTTFFAYQRGDLSHVIDNVLNFLLEENMI-IESKGGSLKATD 494
Query: 999 LGRIASYYYISHGTISTYNEHL-----KPTMGDIELCRLFSLSEEFKYVTVRQDE 1048
LG + S YI + + E L +P + + L L + + K + +R+ +
Sbjct: 495 LGSLVSKLYIDPLSAALIAEGLEKAKKRPDVAEFGLLHLICSTPDVKSLYLRRGD 549
>sp|Q8PZR7|HELS_METMA Putative ski2-type helicase OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=MM_0425 PE=3 SV=1
Length = 730
Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 127/423 (30%), Positives = 207/423 (48%), Gaps = 58/423 (13%)
Query: 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNY 551
G+ +L Q+ + L N+L PT +GKT +A L +L+ + LN
Sbjct: 20 GILELYPPQAEAVEKGLLEGKNLLAAIPTASGKTLLAELAMLKSV-LNGG---------- 68
Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDV---KVRELSGDQTLTRQQIEETQIIVTTPEKW 608
K +Y+ P++AL +E R Q + V +V +GD + + IIV T EK
Sbjct: 69 KALYIVPLRALASEKF----RRFQEFSVLGMRVGISTGDYDRRDEGLGINDIIVATSEKT 124
Query: 609 DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLS 667
D + R + + Q + +++ DE+HL+ +RGP LE T+ ++ +++ LS
Sbjct: 125 DSLLRN--ETAWMQEISVVVADEVHLIDSPDRGPTLEI----TLSKLRRMNPSCQVLALS 178
Query: 668 ATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQ--YIGIQVKKPLQR--FQLMNDLC 723
AT+ N +++A +L L + +RP L + Y GI K ++ Q D
Sbjct: 179 ATVGNADELAAWLDAEL------VLSEWRPTDLMEGVFYNGIFYCKDKEKPVGQPTKDEA 232
Query: 724 YEKVV-AVAGKHQVLIFVHSRKETA----KTARAIRDTALEND--TLGRFLKEDSVSREI 776
V+ + Q L+F SRK K A++ T D TL ++ EI
Sbjct: 233 VNLVLDTIKEGGQCLVFESSRKNCMGFAKKAVSAVKKTLSNEDRETLA------GIADEI 286
Query: 777 LQ-SHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVN 835
++ S TD+ S+ L + G A HHAG+T R+LVE+ F +G ++++ ST TLA G+N
Sbjct: 287 IENSETDV--SSVLATCVRSGTAFHHAGLTTPLRELVENGFREGRIKIISSTPTLAAGLN 344
Query: 836 LPAHTVIIKGTQIYNPEKGAWTELSPLDIM---QMLGRAGRPQYDSYGEGIIITGHSELR 892
LPA VII+ + Y+ + G + P+ ++ QM GRAGRP+ D YGE +++ E
Sbjct: 345 LPARRVIIRSYRRYSSDSG----MQPIPVLEYKQMAGRAGRPRLDPYGEAVLLAKSYEEF 400
Query: 893 YYL 895
+L
Sbjct: 401 VFL 403
>sp|Q8TL39|HELS_METAC Putative ski2-type helicase OS=Methanosarcina acetivorans (strain
ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=MA_3203 PE=3
SV=1
Length = 730
Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 121/416 (29%), Positives = 206/416 (49%), Gaps = 44/416 (10%)
Query: 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNY 551
G+ +L Q+ + L N+L PT +GKT +A L +L+ + +
Sbjct: 20 GIPELYPPQAEAVEKGLLEGKNLLAAIPTASGKTLLAELAMLKSVL-----------AGG 68
Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDII 611
K +Y+ P++AL +E + ++ ++V +GD + + IIV T EK D +
Sbjct: 69 KALYIVPLRALASEKFRRFQDFSEL-GIRVGISTGDYDRRDEGLGINDIIVATSEKTDSL 127
Query: 612 TRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670
R + + Q + ++++DE+HL+ +RGP LE +A+ + +++ LSAT+
Sbjct: 128 LRN--ETAWMQEISVVVVDEVHLIDSADRGPTLEVTLAK----LRKMNPFCQILALSATV 181
Query: 671 PNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQ--YIGIQVKKPLQRF--QLMNDLCYEK 726
N +++A +L L + +RP L + + G K ++ Q D
Sbjct: 182 GNADELAAWLDAEL------VLSEWRPTDLMEGVFFDGTFFCKDKEKLIEQPTKDEAINL 235
Query: 727 VV-AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKED--SVSREILQ-SHTD 782
V+ + Q L+F SRK A+ + T+ TL KE ++ EIL+ S TD
Sbjct: 236 VLDTLREGGQCLVFESSRKNCMGFAK--KATSAVKKTLSAEDKEKLAGIADEILENSETD 293
Query: 783 MVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVI 842
++ L + G A HHAG+T R+LVE F +G+V+++ ST TLA G+NLPA VI
Sbjct: 294 --TASVLASCVRAGTAFHHAGLTSPLRELVETGFREGYVKLISSTPTLAAGLNLPARRVI 351
Query: 843 IKGTQIYNPEKGAWTELSPLDIM---QMLGRAGRPQYDSYGEGIIITGHSELRYYL 895
I+ + Y+ + G + P+ ++ QM GRAGRP+ D YGE +++ E +L
Sbjct: 352 IRSYRRYSSDSG----MQPIPVLEYKQMAGRAGRPRLDPYGEAVLLAKSYEELLFL 403
>sp|Q12WZ6|HELS_METBU Putative ski2-type helicase OS=Methanococcoides burtonii (strain
DSM 6242) GN=Mbur_1102 PE=3 SV=1
Length = 760
Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 126/468 (26%), Positives = 221/468 (47%), Gaps = 53/468 (11%)
Query: 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNY 551
G+ +L Q+ + L N+L PT +GKT +A L +++ +
Sbjct: 20 GIKELYPPQAEAIEMGLLEKKNLLAAIPTASGKTLLAELAMIKAI-----------REGG 68
Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDII 611
K +Y+ P++AL +E L + +KV +GD + IIV T EK D +
Sbjct: 69 KALYIVPLRALASEKFERF-KELAPFGIKVGISTGDLDSRADWLGVNDIIVATSEKTDSL 127
Query: 612 TRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670
R ++ + +++DEIHLL NRGP LE + + +R +++V LSAT+
Sbjct: 128 LRNG--TSWMDEITTVVVDEIHLLDSKNRGPTLEVTITKLMR----LNPDVQVVALSATV 181
Query: 671 PNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYI-GIQVKKPLQRFQL----MNDLCYE 725
N ++A +L G + +RP L + + G + P + ++ +D
Sbjct: 182 GNAREMADWL------GAALVLSEWRPTDLHEGVLFGDAINFPGSQKKIDRLEKDDAVNL 235
Query: 726 KVVAVAGKHQVLIFVHSRKETA---KTARAIRDTALENDTLGRFLKEDSVSREILQSHTD 782
+ + + Q L+F SR+ A KTA + L+ND + +K ++ E+ +S +
Sbjct: 236 VLDTIKAEGQCLVFESSRRNCAGFAKTASSKVAKILDNDIM---IKLAGIAEEV-ESTGE 291
Query: 783 MVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVI 842
+ L + + G A HHAG+ R+LVE+ F ++V+ ST TLA G+NLPA VI
Sbjct: 292 TDTAIVLANCIRKGVAFHHAGLNSNHRKLVENGFRQNLIKVISSTPTLAAGLNLPARRVI 351
Query: 843 IKGTQIYNPEKGAWTELSPLDIM---QMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMN 899
I+ + ++ G + P+ ++ QM GRAGRP D YGE +++ + + LM
Sbjct: 352 IRSYRRFDSNFG----MQPIPVLEYKQMAGRAGRPHLDPYGESVLLAKTYD--EFAQLME 405
Query: 900 QQLPIESQFV-SKLADQ------LNAEIVLGTVQNAKEACNWIGYTYL 940
+ +++ + SKL + + + IV G +E ++ G T+
Sbjct: 406 NYVEADAEDIWSKLGTENALRTHVLSTIVNGFASTRQELFDFFGATFF 453
>sp|Q8TDG4|HELQ_HUMAN Helicase POLQ-like OS=Homo sapiens GN=HELQ PE=1 SV=2
Length = 1101
Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 149/567 (26%), Positives = 256/567 (45%), Gaps = 89/567 (15%)
Query: 479 ISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLAL 538
I ++ EW LN VQ R N++ PT GKT VA + +LQ+L
Sbjct: 333 IEKLYEWQHTCL----TLNSVQER---------KNLIYSLPTSGGKTLVAEILMLQELLC 379
Query: 539 NRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL--TRQQIE 596
R D ++ + P A+V E + LS+ V E +G + ++ E
Sbjct: 380 CRKD----------VLMILPYVAIVQEKISGLSSFGIELGFFVEEYAGSKGRFPPTKRRE 429
Query: 597 ETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIE 655
+ + + T EK + + + L+++DE+H++ + +RG LE +A+ + +
Sbjct: 430 KKSLYIATIEKGHSLVNSLIETGRIDSLGLVVVDELHMIGEGSRGATLEMTLAKILYTSK 489
Query: 656 TTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGI-------- 707
TT+ ++G+SATL N ED+ FL+ Y+ + +RPV L ++Y+ I
Sbjct: 490 TTQ----IIGMSATLNNVEDLQKFLQAE------YYTSQFRPVEL-KEYLKINDTIYEVD 538
Query: 708 -QVKKPLQRFQLMN------------DLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIR 754
+ + + +L+N D V V + L+F S+K A I
Sbjct: 539 SKAENGMTFSRLLNYKYSDTLKKMDPDHLVALVTEVIPNYSCLVFCPSKKNCENVAEMIC 598
Query: 755 DTALENDTLGRFLKEDSVSREILQSHTDMVKSN---DLKDLLPYGFAIHHAGMTRGDRQL 811
L + L KE E++++ ++ N LK +P+G A HH+G+T +R+L
Sbjct: 599 K-FLSKEYLKHKEKEKC---EVIKNLKNIGNGNLCPVLKRTIPFGVAYHHSGLTSDERKL 654
Query: 812 VEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRA 871
+E+ + G + + T+TLA GVNLPA VI++ + A L QM+GRA
Sbjct: 655 LEEAYSTGVLCLFTCTSTLAAGVNLPARRVILRAPYV------AKEFLKRNQYKQMIGRA 708
Query: 872 GRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEI--VLGTVQNAK 929
GR D+ GE I+I + + L L+ + P+E+ + S L + I + ++ K
Sbjct: 709 GRAGIDTIGESILILQEKDKQQVLELITK--PLENCY-SHLVQEFTKGIQTLFLSLIGLK 765
Query: 930 EACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVH--TAATILDRNNLVKY 987
A N I N +G+ +VL ++ +L E + + T +L ++ + K
Sbjct: 766 IATNLDD-----IYHFMNGTFFGVQQKVLLKEKSLWEITVESLRYLTEKGLLQKDTIYKS 820
Query: 988 DRKSGY-FQVTDLGRIASYYYISHGTI 1013
+ + Y F +T LGR AS+ GTI
Sbjct: 821 EEEVQYNFHITKLGR-ASF----KGTI 842
>sp|Q2VPA6|HELQ_MOUSE Helicase POLQ-like OS=Mus musculus GN=Helq PE=2 SV=2
Length = 1069
Score = 134 bits (336), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 133/529 (25%), Positives = 250/529 (47%), Gaps = 84/529 (15%)
Query: 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572
N++ PT GKT VA + +LQ+L + D ++ + P A+V E + +LS+
Sbjct: 313 NLIYSLPTSGGKTLVAEILMLQELLCRQKD----------VLMILPYVAIVQEKISSLSS 362
Query: 573 RLQMYDVKVRELSGDQ----TLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLI 628
V E +G + + R+ E+ + + T EK + + + + L++
Sbjct: 363 FGIELGFFVEEYAGSKGRFPPIKRR--EKKSLYIATIEKAHSLVNALIETSRLSTLGLVV 420
Query: 629 IDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKG 687
+DE+H++ + +RG +LE +A+ + +TT+ ++G+SATL N ED+ FL+
Sbjct: 421 VDELHMIGEGSRGAILEMTLAKVLYTSKTTQ----IIGMSATLNNVEDLQAFLKAE---- 472
Query: 688 LFYFDNSYRPVPL--------------SQQYIGIQVKKPL-----QRFQLMN-DLCYEKV 727
Y+ + +RPV L SQ G+ + L + + M+ D V
Sbjct: 473 --YYTSQFRPVELKEFLKVNDTIYEVDSQAADGMTFSRLLSYKYSEALKKMDPDRLVALV 530
Query: 728 VAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSR------EILQSHT 781
V + L+F S+K A + L +FL +D ++ E+++S
Sbjct: 531 TEVIPNYSCLVFCPSKKNCENVA----------EMLCKFLSKDYLNHREKEKCEVIKSLR 580
Query: 782 DMVKSND---LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPA 838
++ LK +P+G A HH+G+T +R+L+E+ + G + +L T+TLA GVNLPA
Sbjct: 581 NIGNGKVCPVLKRTVPFGIAYHHSGLTSEERKLLEEAYSTGVLCLLTCTSTLAAGVNLPA 640
Query: 839 HTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLM 898
VI++ + N T L QM+GRAGR D+ GE I++ + + L L+
Sbjct: 641 RRVILRAPYVAN------TFLKRNQYKQMVGRAGRAGIDTAGESILLLQEKDKQQVLELI 694
Query: 899 NQQLPIESQFVSKLADQLNAEI--VLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPE 956
+ P+E+ S L ++ I + ++ K A + +G Y ++ + +G+ +
Sbjct: 695 SG--PLET-CCSHLVEEFTKGIQALFLSLIGLKIAAS-LGDIYQFM----SGTFFGVQQK 746
Query: 957 VLKEDITLGERRADLVH--TAATILDRNNLVKYDRKSGYFQVTDLGRIA 1003
+L ++ +L E D + T +L +++ + +F++T LG+ +
Sbjct: 747 ILLKEKSLWEITVDALEHLTEKGLLQKDSCGDNEGLECHFRITKLGQAS 795
>sp|Q5JGV6|HELS_PYRKO Putative ski2-type helicase OS=Pyrococcus kodakaraensis (strain
ATCC BAA-918 / JCM 12380 / KOD1) GN=TK1332 PE=3 SV=1
Length = 1125
Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 98/351 (27%), Positives = 172/351 (49%), Gaps = 47/351 (13%)
Query: 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSN 550
+G+ +L Q+ KS + N++L PT +GKT V+ + ++ +L ++ G
Sbjct: 19 RGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVSEIVMVNKLL---SEGG------ 69
Query: 551 YKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDI 610
K VY+ P+KAL E ++ ++V +GD T + + IIV T EK+D
Sbjct: 70 -KAVYLVPLKALAEEKYREFKE-WEVLGLRVAATTGDYDSTDEWLGRYDIIVATAEKFDS 127
Query: 611 ITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669
+ R ++ + VKL++ DE+HL+ +RG LE I+ + + + ++ LSAT
Sbjct: 128 LLRHGA--SWIKDVKLVVADEVHLIGSYDRGATLEMILTHMLGKAQ-------ILALSAT 178
Query: 670 LPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDL-----CY 724
+ N E++A +L +L + +RPV L + + Q F + +
Sbjct: 179 VGNAEELAEWLDASL------VVSDWRPVELRKGVFHLG-----QLFWEDGKIDHYPENW 227
Query: 725 EKVV--AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSR--EILQSH 780
E +V AV Q L+FV++R+ K A ++ + + + L + R E++ S
Sbjct: 228 ESLVLDAVKKGKQALVFVNTRRSAEKEAISL------SSKVSKLLTKPETRRLEELISSI 281
Query: 781 TDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLA 831
D + LK L G A HHAG++R +R L+ED F +G ++V+ +T TL
Sbjct: 282 EDNPTTEKLKRALKGGVAFHHAGLSRAERTLIEDAFRNGLIKVITATPTLC 332
Score = 61.2 bits (147), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 37/54 (68%), Gaps = 2/54 (3%)
Query: 833 GVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT 886
G+NLPA VII+ T+ Y WT++ L+I QM+GRAGRP+YD GE II+
Sbjct: 737 GINLPAFRVIIRDTKRY--ANFGWTDIPVLEIQQMMGRAGRPKYDKVGEAIIVA 788
>sp|Q10701|HELY_MYCTU Probable helicase HelY OS=Mycobacterium tuberculosis GN=helY PE=3
SV=1
Length = 906
Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 139/541 (25%), Positives = 221/541 (40%), Gaps = 108/541 (19%)
Query: 506 SALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAE 565
SAL +L+CAPTGAGKT V + LA + K Y P+KAL +
Sbjct: 27 SALERGHGVLVCAPTGAGKTVVGEFAVHLALA-----------AGSKCFYTTPLKALSNQ 75
Query: 566 VVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS--GDRTYTQL 623
+L+ R + + L+GD ++ ++V T E + R D Q
Sbjct: 76 KHTDLTARYGRDQIGL--LTGDLSVN----GNAPVVVMTTE----VLRNMLYADSPALQG 125
Query: 624 VKLLIIDEIHLLHDN-RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRV 682
+ +++DE+H L D RGPV E ++ + + +R+V LSAT+ N E+ +++
Sbjct: 126 LSYVVMDEVHFLADRMRGPVWEEVILQL-------PDDVRVVSLSATVSNAEEFGGWIQT 178
Query: 683 NLEKGLFYFDNSYRPVPLSQQY-------------IGIQVKKPLQRFQLMNDLCYEK--- 726
D +RPVPL Q IG +P +L+ + + +
Sbjct: 179 VRGDTTVVVDE-HRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVNRELLRHIAHRREAD 237
Query: 727 -------------------------VVA---VAGKHQVLIFVHSRKET-AKTARAIRDTA 757
V+A G + FV SR A + +R
Sbjct: 238 RMADWQPRRRGSGRPGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQCLRSPL 297
Query: 758 LENDTLGRFLKEDSVSR--EILQSHTDMVKSNDLKDLLPY--------GFAIHHAGMTRG 807
R E+ +R E++ + +DL L Y G A HHAGM
Sbjct: 298 -------RLTSEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPA 350
Query: 808 DRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQM 867
R VE+LF G V+ + +T TLA G+N+PA TV+++ +N E+ L+P + Q+
Sbjct: 351 FRHTVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQ--HMPLTPGEYTQL 408
Query: 868 LGRAGRPQYDSYGEGIII----TGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLG 923
GRAGR D G ++I SE+ S + P+ S F A N I L
Sbjct: 409 TGRAGRRGIDVEGHAVVIWHPEIEPSEVAGLAS--TRTFPLRSSF----APSYNMTINLV 462
Query: 924 TVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNN 983
++A + ++ + R+ + GL + + + LGE A+L + A IL+
Sbjct: 463 HRMGPQQAHRLLEQSFAQYQADRS--VVGLVRGIERGNRILGEIAAELGGSDAPILEYAR 520
Query: 984 L 984
L
Sbjct: 521 L 521
>sp|Q58524|HELS_METJA Putative ski2-type helicase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1124 PE=3 SV=1
Length = 1195
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 95/364 (26%), Positives = 174/364 (47%), Gaps = 53/364 (14%)
Query: 492 GMTQLNRVQSRVYKSALSSAD-NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSN 550
G+ +L Q + + L + N L+ PT +GKT + + ++ L DG+ N +N
Sbjct: 12 GIVELRPPQKKALERGLLDKNKNFLISIPTASGKTLIGEMALINHLL-----DGNKNPTN 66
Query: 551 YKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDI 610
K +++ P+KAL +E ++ + Y +++ GD + + + +I+TT EK D
Sbjct: 67 KKGIFIVPLKALASEKYEEFKSKYERYGLRIALSIGDYD-EDEDLSKYHLIITTAEKLDS 125
Query: 611 ITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669
+ R D + V ++++DEIHL++D RG LE ++ + + +++++GLSAT
Sbjct: 126 LWRHKID--WINDVSVVVVDEIHLINDETRGGTLEILLTKL------KEFNVQIIGLSAT 177
Query: 670 LPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQ--------LMND 721
+ N +++A +L L + +RPV L + GI + ++ + N+
Sbjct: 178 IGNPDELAEWLNAEL------IVDDWRPVELKK---GIYKNEAIEFINGEIREIKAVDNN 228
Query: 722 LCYEKVV-AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSR------ 774
Y VV V L+F ++++ A+ + L +FL E+ R
Sbjct: 229 DIYNLVVDCVKEGGCCLVFCNTKRNAVNEAKKL--------NLKKFLTEEEKIRLKEIAE 280
Query: 775 ---EILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLA 831
IL+ T+M K+ L + + G A HHAG+T R++VED F ++V+ T TL
Sbjct: 281 EILSILEPPTEMCKT--LAECILNGSAFHHAGLTYQHRKIVEDAFRKRLIKVICCTPTLC 338
Query: 832 WGVN 835
N
Sbjct: 339 LNAN 342
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
Query: 833 GVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE-- 890
G+NLP I+K + + + + ++I Q +GRAGRP D YGEGII+ +
Sbjct: 841 GLNLPCRRAIVKDLTRFTNKGMRYIPI--MEIQQCIGRAGRPGLDPYGEGIIVAKNDRDY 898
Query: 891 LRYYLSLMNQQLPIESQFVSK--LADQLNAEIVLGTVQN 927
LR Y +L + PI S+ ++ L QL I G +++
Sbjct: 899 LRAYQALTQKPEPIYSKLSNQAVLRTQLLGLIATGEIRD 937
>sp|Q914M3|Y007_SIFVH Putative helicase 7 OS=Sulfolobus islandicus filamentous virus
(isolate Iceland/Hveragerdi) GN=SIFV0007 PE=4 SV=1
Length = 601
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 106/413 (25%), Positives = 181/413 (43%), Gaps = 90/413 (21%)
Query: 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIV 554
QLN Q + +S L S N+L+ APTG GK+ +A+L ++ + ++V
Sbjct: 7 QLNEFQKKALQSFLMSDKNLLITAPTGTGKSFLAMLMAME--------------TKSRVV 52
Query: 555 YVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIE------ETQIIVTTPEKW 608
Y P++AL ++ + N++ V + LT + E E ++I TT EK
Sbjct: 53 YTVPLRALALQLNDDFHNKVAPL---VNGYADSVALTSEVYEEDPENLEERVIFTTYEKA 109
Query: 609 DIITRKSGDRTYTQLVKLLIIDEIHLLHDN-RGPVLESIVARTVRQIETTKEHIRLVGLS 667
D I R+ +T ++ LIIDEIH + D RG +E+++A + E IR+V +S
Sbjct: 110 DAIFRRH--YPWTDRIETLIIDEIHNIGDKERGKAIENLIAYAMN------EGIRIVAMS 161
Query: 668 ATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL-----QRFQLMNDL 722
AT+P+ +A + + K RP+PL Y +++ L +L D
Sbjct: 162 ATIPDVNKIAEIIDAEIIK------TDERPIPL---YKAVKIGNKLYFEDGDVIELKEDF 212
Query: 723 CYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTD 782
+ V K++V++ S ++ A+ I D +N
Sbjct: 213 IKKMV----RKNKVVMIFTSTRKKAEELYMIYDRKFQNKV-------------------- 248
Query: 783 MVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVI 842
A HAG+ + + + G ++VST L+ GVN P + V+
Sbjct: 249 ---------------AFFHAGLDAETKLRLLEETRQGKYNIIVSTTALSQGVNFPFYAVV 293
Query: 843 IKGTQIYNPEKG---AWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR 892
++ E G W +++P++ Q+ GRAGRP YD EG+ I +++R
Sbjct: 294 FDDLKLPIIEYGRFTGWKQITPIEFDQICGRAGRPGYDE--EGLCIIEATDIR 344
>sp|O13799|YE02_SCHPO Uncharacterized helicase C17H9.02 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC17H9.02 PE=1 SV=1
Length = 1030
Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 119/469 (25%), Positives = 205/469 (43%), Gaps = 88/469 (18%)
Query: 461 HVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPT 520
++P KH P DP PA +L+ QS K + +++L+ A T
Sbjct: 106 YIPLNKHIPSDP---------------PAKTYPFELDPFQSTAIK-CVERMESVLVSAHT 149
Query: 521 GAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVK 580
AGKT +A I Q L NR +++Y +P+K+L + L + + DV
Sbjct: 150 SAGKTVIAEYAIAQALK-NRQ----------RVIYTSPIKSLSNQKYRELLS--EFGDVG 196
Query: 581 VRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NR 639
+ ++GD ++ ++ T E + K+ + + + +I DE+H + D +R
Sbjct: 197 L--MTGDVSIN----PSASCLIMTTEILRAMLYKNSEIMHE--IAWVIFDEVHYMRDKDR 248
Query: 640 GPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVP 699
G V E + + IR + LSATLPN A ++ ++ YRP P
Sbjct: 249 GVVWEETLI-------LLPDAIRFIFLSATLPNALQFARWISEIHKQPCHVVYTDYRPTP 301
Query: 700 LSQQYI------GIQV------KKPLQRFQLMNDLC---------------------YEK 726
L Q +I GI + K + F+ + ++ E+
Sbjct: 302 L-QHFIYPQGADGIYMLVDEKNKFKTENFKKVLEVLDHSTRQENYSKSSKKVKKSSSLER 360
Query: 727 VVAVAGKHQ---VLIFVHSRKETAKTARAIRDTALENDTLGRFLKE---DSVSREILQSH 780
++ + ++ +++F S+KE A L NDT + L DS ++ +
Sbjct: 361 IINMVLSNRYDPIIVFCFSKKECEINAHQFGKLDL-NDTENKELVTEIFDSAINQLSEED 419
Query: 781 TDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHT 840
+ + +++ LL G IHH+G+ ++LVE LF +G V++L +T T + G+N+PA T
Sbjct: 420 RGLRQFEEMRSLLLRGIGIHHSGLLPILKELVEILFQEGLVRILFATETFSIGLNMPART 479
Query: 841 VIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS 889
V+ Q ++ W L+ + MQM GRAGR D+ G I+I S
Sbjct: 480 VLFTKAQKFSGNNFRW--LTSGEYMQMSGRAGRRGIDTKGLSIVILDQS 526
>sp|Q58796|Y1401_METJA Probable ATP-dependent helicase MJ1401 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1401 PE=3 SV=1
Length = 808
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 111/447 (24%), Positives = 192/447 (42%), Gaps = 87/447 (19%)
Query: 444 DLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRV 503
D PE ++ G EE + K LD E+L +I + +G+ +L VQ+
Sbjct: 168 DKPELTRYDIITGSEEDKIENYKIDELDIPEELKEIIKS--------RGIEELLPVQTLS 219
Query: 504 YKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALV 563
K+ L + D++L+ + T +GKT + L ++ L + K +++ P+ AL
Sbjct: 220 VKAGLLNGDDLLIISATSSGKTLIGELAGIKNLI----------KTGKKFLFLVPLVALA 269
Query: 564 AEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQ----IIVTTPEKWDIITRKSGDRT 619
+ R + KV G + ++ ET IIV T E D + R +
Sbjct: 270 NQKYLEFKERYEKLGFKVSLRVGLGRIGKKVDVETSLDADIIVGTYEGIDYLIRTKRLKD 329
Query: 620 YTQLVKLLIIDEIHLLH-DNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVAL 678
+ ++IDEIH L+ + RG L+ ++ R + ++ + LSAT+ N +++A
Sbjct: 330 ----IGTVVIDEIHSLNLEERGARLDGLIGRLRFLFKEAQK----IYLSATIGNPKELAK 381
Query: 679 FLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLC---YEKVVAVAGKHQ 735
L L + Y + RPVPL + I K + ++ ++ ++ + + Q
Sbjct: 382 QLNAKL---VLY---NGRPVPLERHIIF--CKNDFAKLNIIKEIVKREWQNISKFGYRGQ 433
Query: 736 VLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPY 795
LIF +SRK A+A++ ++ +
Sbjct: 434 CLIFTYSRKRAEYLAKALKSKGIKAE---------------------------------- 459
Query: 796 GFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGA 855
+H GM R+ VED F + +Q +V+TA L+ GV+ PA TVI++ + GA
Sbjct: 460 ---FYHGGMEYIKRRKVEDDFANQKIQCVVTTAALSAGVDFPASTVILESLAM-----GA 511
Query: 856 -WTELSPLDIMQMLGRAGRPQYDSYGE 881
W L+P + QM GRAGR G+
Sbjct: 512 DW--LNPAEFQQMCGRAGRKGMHEIGK 536
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 492,698,466
Number of Sequences: 539616
Number of extensions: 22399038
Number of successful extensions: 132059
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 1039
Number of HSP's that attempted gapping in prelim test: 108411
Number of HSP's gapped (non-prelim): 12391
length of query: 1300
length of database: 191,569,459
effective HSP length: 130
effective length of query: 1170
effective length of database: 121,419,379
effective search space: 142060673430
effective search space used: 142060673430
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 67 (30.4 bits)