Query 000756
Match_columns 1300
No_of_seqs 700 out of 4120
Neff 7.6
Searched_HMMs 46136
Date Mon Apr 1 23:08:11 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000756.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000756hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0951 RNA helicase BRR2, DEA 100.0 9E-211 2E-215 1875.2 68.8 1104 166-1300 1-1105(1674)
2 KOG0952 DNA/RNA helicase MER3/ 100.0 9E-158 2E-162 1408.3 52.6 851 418-1300 35-889 (1230)
3 PRK02362 ski2-like helicase; P 100.0 3E-91 6.6E-96 894.0 59.5 660 482-1196 8-706 (737)
4 PRK00254 ski2-like helicase; P 100.0 1.6E-87 3.4E-92 857.7 58.2 656 482-1194 8-699 (720)
5 COG1204 Superfamily II helicas 100.0 5.9E-89 1.3E-93 851.6 31.1 738 482-1257 16-763 (766)
6 PRK01172 ski2-like helicase; P 100.0 1.5E-82 3.3E-87 808.7 58.9 643 482-1195 8-667 (674)
7 KOG0951 RNA helicase BRR2, DEA 100.0 2.2E-67 4.7E-72 635.5 32.6 516 458-1029 1107-1626(1674)
8 smart00611 SEC63 Domain of unk 100.0 1.5E-56 3.3E-61 520.3 30.9 306 994-1300 2-310 (312)
9 PF02889 Sec63: Sec63 Brl doma 100.0 5.8E-54 1.2E-58 499.5 27.2 305 996-1300 1-313 (314)
10 COG1202 Superfamily II helicas 100.0 7.2E-51 1.6E-55 461.6 42.9 556 478-1135 195-828 (830)
11 KOG0330 ATP-dependent RNA heli 100.0 7E-45 1.5E-49 398.6 29.6 343 484-903 70-424 (476)
12 PRK13767 ATP-dependent helicas 100.0 3.6E-44 7.8E-49 463.5 39.0 413 480-943 16-459 (876)
13 KOG0950 DNA polymerase theta/e 100.0 2.7E-44 5.9E-49 432.5 33.0 658 481-1181 206-934 (1008)
14 COG1201 Lhr Lhr-like helicases 100.0 2.6E-43 5.5E-48 434.4 38.3 403 479-942 5-422 (814)
15 TIGR03817 DECH_helic helicase/ 100.0 1.7E-43 3.8E-48 448.6 36.8 356 481-894 20-391 (742)
16 KOG0947 Cytoplasmic exosomal R 100.0 4.7E-43 1E-47 416.7 31.0 386 495-917 297-754 (1248)
17 PRK10590 ATP-dependent RNA hel 100.0 2.2E-42 4.9E-47 421.0 36.6 345 481-895 7-358 (456)
18 PLN00206 DEAD-box ATP-dependen 100.0 3.2E-42 6.9E-47 424.6 37.2 346 481-896 127-482 (518)
19 PRK11776 ATP-dependent RNA hel 100.0 4.6E-42 1E-46 419.8 36.5 337 481-894 10-354 (460)
20 KOG0331 ATP-dependent RNA heli 100.0 2.2E-42 4.8E-47 405.1 31.7 346 481-893 97-452 (519)
21 PRK04837 ATP-dependent RNA hel 100.0 4.6E-42 9.9E-47 415.4 34.9 346 481-895 14-368 (423)
22 PTZ00110 helicase; Provisional 100.0 7E-42 1.5E-46 422.7 37.0 343 481-895 136-490 (545)
23 PRK11192 ATP-dependent RNA hel 100.0 3.2E-41 7E-46 409.8 38.2 342 481-894 7-357 (434)
24 PRK04537 ATP-dependent RNA hel 100.0 2.8E-41 6E-46 418.7 36.2 344 482-892 16-367 (572)
25 KOG0948 Nuclear exosomal RNA h 100.0 1E-42 2.2E-47 404.8 21.4 392 495-923 129-575 (1041)
26 PTZ00424 helicase 45; Provisio 100.0 8.9E-41 1.9E-45 402.5 35.4 340 482-897 35-382 (401)
27 PLN03137 ATP-dependent DNA hel 100.0 3.1E-40 6.6E-45 413.3 39.9 327 491-901 456-799 (1195)
28 PRK01297 ATP-dependent RNA hel 100.0 1.8E-40 4E-45 406.8 36.9 343 481-891 93-444 (475)
29 PRK09751 putative ATP-dependen 100.0 9.6E-41 2.1E-45 435.4 35.8 400 516-941 1-444 (1490)
30 PRK11634 ATP-dependent RNA hel 100.0 3E-40 6.4E-45 411.5 36.5 337 482-895 13-358 (629)
31 COG0513 SrmB Superfamily II DN 100.0 2.8E-40 6E-45 404.7 35.0 339 482-895 36-387 (513)
32 KOG0338 ATP-dependent RNA heli 100.0 4.3E-41 9.3E-46 378.1 25.1 340 491-901 199-545 (691)
33 KOG0333 U5 snRNP-like RNA heli 100.0 7.4E-40 1.6E-44 369.8 32.1 351 482-896 252-631 (673)
34 COG4581 Superfamily II RNA hel 100.0 5.5E-40 1.2E-44 409.1 32.4 409 495-940 119-587 (1041)
35 KOG0342 ATP-dependent RNA heli 100.0 6.2E-40 1.4E-44 370.2 28.2 351 481-905 88-451 (543)
36 KOG0345 ATP-dependent RNA heli 100.0 6.9E-39 1.5E-43 358.8 34.3 348 482-899 13-373 (567)
37 TIGR00614 recQ_fam ATP-depende 100.0 6.7E-39 1.4E-43 391.7 32.7 329 491-900 7-344 (470)
38 KOG0348 ATP-dependent RNA heli 100.0 1.3E-38 2.8E-43 360.1 30.3 380 481-900 142-564 (708)
39 KOG0340 ATP-dependent RNA heli 100.0 6.5E-39 1.4E-43 348.0 25.8 344 478-895 10-367 (442)
40 KOG0326 ATP-dependent RNA heli 100.0 7.8E-40 1.7E-44 349.3 18.0 333 483-892 94-432 (459)
41 KOG0343 RNA Helicase [RNA proc 100.0 8.1E-39 1.7E-43 362.5 26.3 345 491-906 87-440 (758)
42 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.1E-37 2.3E-42 395.0 34.0 410 504-1024 10-430 (819)
43 KOG0328 Predicted ATP-dependen 100.0 6.2E-38 1.3E-42 330.0 23.8 337 484-896 37-380 (400)
44 PRK11057 ATP-dependent DNA hel 100.0 6.4E-37 1.4E-41 383.7 36.1 335 477-901 7-355 (607)
45 TIGR01389 recQ ATP-dependent D 100.0 3E-37 6.4E-42 387.9 32.6 327 491-904 9-346 (591)
46 PRK11664 ATP-dependent RNA hel 100.0 4.5E-37 9.8E-42 390.3 33.3 409 505-1022 14-431 (812)
47 KOG0335 ATP-dependent RNA heli 100.0 1.9E-37 4E-42 357.5 26.1 346 482-890 81-445 (482)
48 KOG0347 RNA helicase [RNA proc 100.0 1.8E-36 3.9E-41 343.7 22.8 375 482-914 188-603 (731)
49 KOG0336 ATP-dependent RNA heli 100.0 1.6E-35 3.5E-40 324.7 23.2 335 491-898 238-581 (629)
50 KOG0332 ATP-dependent RNA heli 100.0 6.8E-35 1.5E-39 318.2 27.5 341 483-890 99-444 (477)
51 PRK11131 ATP-dependent RNA hel 100.0 1.3E-34 2.9E-39 371.7 33.7 441 503-1050 81-534 (1294)
52 KOG0350 DEAD-box ATP-dependent 100.0 7E-35 1.5E-39 328.4 25.9 345 491-899 155-550 (620)
53 TIGR01967 DEAH_box_HrpA ATP-de 100.0 4.1E-34 8.9E-39 368.8 34.7 440 502-1050 73-525 (1283)
54 TIGR00580 mfd transcription-re 100.0 6.2E-34 1.3E-38 364.1 35.6 311 492-890 449-771 (926)
55 PRK10917 ATP-dependent DNA hel 100.0 1E-33 2.2E-38 358.4 34.7 307 495-889 261-589 (681)
56 TIGR00643 recG ATP-dependent D 100.0 9.4E-34 2E-38 356.6 32.8 312 492-888 233-565 (630)
57 KOG0339 ATP-dependent RNA heli 100.0 3.4E-34 7.5E-39 321.8 25.0 334 491-895 241-581 (731)
58 KOG0922 DEAH-box RNA helicase 100.0 4.8E-33 1E-37 326.8 31.6 439 506-1050 61-509 (674)
59 KOG0346 RNA helicase [RNA proc 100.0 3.1E-33 6.6E-38 310.7 24.7 343 481-892 25-413 (569)
60 PRK10689 transcription-repair 100.0 1.6E-32 3.5E-37 358.1 35.4 308 495-889 600-919 (1147)
61 PHA02653 RNA helicase NPH-II; 100.0 2.8E-32 6E-37 338.1 34.9 326 498-890 167-515 (675)
62 KOG0334 RNA helicase [RNA proc 100.0 6.3E-33 1.4E-37 339.5 27.1 362 491-923 383-757 (997)
63 KOG0344 ATP-dependent RNA heli 100.0 4.7E-33 1E-37 322.1 24.2 348 482-895 143-501 (593)
64 COG1643 HrpA HrpA-like helicas 100.0 4.9E-32 1.1E-36 337.5 33.2 428 503-1037 57-497 (845)
65 COG0514 RecQ Superfamily II DN 100.0 4.7E-32 1E-36 324.1 30.9 327 486-903 9-351 (590)
66 KOG0341 DEAD-box protein abstr 100.0 2.6E-33 5.6E-38 305.5 17.3 335 482-890 177-529 (610)
67 KOG4284 DEAD box protein [Tran 100.0 6.5E-33 1.4E-37 318.5 21.3 330 491-891 43-381 (980)
68 COG1205 Distinct helicase fami 100.0 9.8E-32 2.1E-36 342.0 29.6 349 491-895 66-429 (851)
69 TIGR03158 cas3_cyano CRISPR-as 100.0 1.9E-31 4E-36 314.1 29.6 301 499-872 1-357 (357)
70 COG1111 MPH1 ERCC4-like helica 100.0 7.6E-31 1.6E-35 299.5 31.3 340 491-895 11-489 (542)
71 TIGR02621 cas3_GSU0051 CRISPR- 100.0 5.7E-31 1.2E-35 327.2 32.6 321 491-885 12-388 (844)
72 KOG0923 mRNA splicing factor A 100.0 2E-31 4.3E-36 308.0 24.6 450 499-1051 269-727 (902)
73 TIGR01587 cas3_core CRISPR-ass 100.0 9.5E-31 2.1E-35 310.5 27.1 301 514-890 2-337 (358)
74 KOG0924 mRNA splicing factor A 100.0 7.1E-30 1.5E-34 294.9 29.2 454 499-1056 360-822 (1042)
75 KOG0952 DNA/RNA helicase MER3/ 100.0 3.8E-33 8.3E-38 337.0 1.6 305 493-812 925-1229(1230)
76 KOG0327 Translation initiation 100.0 2E-30 4.3E-35 287.2 21.0 334 484-896 36-377 (397)
77 PHA02558 uvsW UvsW helicase; P 100.0 3E-29 6.4E-34 308.4 30.1 310 494-885 113-449 (501)
78 KOG0337 ATP-dependent RNA heli 100.0 1.9E-30 4.1E-35 287.5 16.6 337 486-897 33-376 (529)
79 KOG0949 Predicted helicase, DE 100.0 3.9E-29 8.4E-34 298.8 24.5 366 495-888 511-1047(1330)
80 KOG0354 DEAD-box like helicase 100.0 7.1E-28 1.5E-32 290.8 28.9 341 491-891 58-531 (746)
81 KOG0926 DEAH-box RNA helicase 100.0 6.5E-28 1.4E-32 283.0 25.3 451 507-1021 267-796 (1172)
82 KOG0920 ATP-dependent RNA heli 100.0 1.2E-27 2.7E-32 296.3 28.1 422 500-1019 177-636 (924)
83 PRK05580 primosome assembly pr 100.0 1.5E-27 3.2E-32 301.2 26.6 369 495-895 144-555 (679)
84 PRK13766 Hef nuclease; Provisi 100.0 2.4E-26 5.3E-31 298.8 37.6 333 493-891 13-481 (773)
85 KOG0352 ATP-dependent DNA heli 100.0 7.3E-28 1.6E-32 266.2 19.2 331 486-898 11-371 (641)
86 PRK14701 reverse gyrase; Provi 100.0 3.4E-27 7.5E-32 314.6 28.0 330 491-900 76-467 (1638)
87 KOG0351 ATP-dependent DNA heli 100.0 2E-27 4.4E-32 299.8 24.4 328 491-901 260-604 (941)
88 TIGR00603 rad25 DNA repair hel 100.0 2.7E-26 5.8E-31 283.3 30.5 319 494-894 254-612 (732)
89 PRK09401 reverse gyrase; Revie 99.9 1.5E-26 3.3E-31 303.0 29.4 304 492-873 78-430 (1176)
90 KOG0925 mRNA splicing factor A 99.9 2.4E-26 5.2E-31 258.0 24.5 426 500-1033 51-490 (699)
91 PRK12898 secA preprotein trans 99.9 1.9E-25 4.2E-30 272.8 33.3 319 495-890 103-587 (656)
92 KOG4434 Molecular chaperone SE 99.9 1.6E-26 3.5E-31 249.8 20.4 275 1021-1299 8-475 (520)
93 TIGR03714 secA2 accessory Sec 99.9 5.2E-25 1.1E-29 271.8 34.6 348 496-916 69-580 (762)
94 TIGR00595 priA primosomal prot 99.9 1.9E-26 4.2E-31 281.3 21.6 344 515-894 1-386 (505)
95 PRK09200 preprotein translocas 99.9 4.5E-25 9.7E-30 275.0 33.1 348 495-916 78-583 (790)
96 KOG0329 ATP-dependent RNA heli 99.9 8.2E-27 1.8E-31 242.8 13.2 326 446-894 25-360 (387)
97 KOG0353 ATP-dependent DNA heli 99.9 1.6E-25 3.5E-30 243.6 20.9 325 485-891 85-469 (695)
98 TIGR01054 rgy reverse gyrase. 99.9 1.7E-24 3.6E-29 284.4 30.8 285 493-854 76-410 (1171)
99 TIGR00963 secA preprotein tran 99.9 7.9E-24 1.7E-28 259.7 32.3 347 495-915 56-555 (745)
100 COG1200 RecG RecG-like helicas 99.9 2.4E-24 5.1E-29 256.8 26.8 316 495-890 262-592 (677)
101 PRK09694 helicase Cas3; Provis 99.9 4.8E-24 1E-28 270.7 30.8 314 493-876 284-664 (878)
102 COG1061 SSL2 DNA or RNA helica 99.9 6.8E-23 1.5E-27 247.4 26.4 297 493-874 34-376 (442)
103 COG4098 comFA Superfamily II D 99.9 3.3E-22 7.2E-27 217.6 27.3 312 495-888 97-415 (441)
104 COG1197 Mfd Transcription-repa 99.9 2.5E-21 5.4E-26 242.7 30.6 307 495-890 594-914 (1139)
105 KOG0349 Putative DEAD-box RNA 99.9 4.6E-22 1E-26 220.3 16.1 285 549-888 285-614 (725)
106 PRK11448 hsdR type I restricti 99.9 2.5E-20 5.4E-25 243.5 29.4 336 494-886 412-813 (1123)
107 PRK04914 ATP-dependent helicas 99.9 2.2E-19 4.7E-24 229.8 36.8 325 495-889 152-605 (956)
108 cd00268 DEADc DEAD-box helicas 99.9 1.5E-20 3.3E-25 204.8 21.0 183 482-682 6-194 (203)
109 COG1198 PriA Primosomal protei 99.9 3.4E-20 7.4E-25 228.9 25.2 372 493-897 196-611 (730)
110 PRK13104 secA preprotein trans 99.9 1.8E-19 3.9E-24 224.2 31.0 128 495-636 82-215 (896)
111 PRK12906 secA preprotein trans 99.8 3.7E-19 8E-24 220.7 31.6 353 495-917 80-594 (796)
112 PF00270 DEAD: DEAD/DEAH box h 99.8 2.4E-20 5.2E-25 196.7 16.0 158 497-671 1-163 (169)
113 COG1203 CRISPR-associated heli 99.8 1.2E-18 2.6E-23 222.5 25.3 327 496-890 196-551 (733)
114 PRK12904 preprotein translocas 99.8 4.5E-18 9.7E-23 211.9 29.5 126 495-635 81-213 (830)
115 PRK13107 preprotein translocas 99.8 1.2E-17 2.7E-22 207.2 28.3 128 495-636 82-215 (908)
116 PRK12899 secA preprotein trans 99.8 6.1E-17 1.3E-21 201.2 33.4 133 492-636 86-228 (970)
117 TIGR01407 dinG_rel DnaQ family 99.8 2.8E-16 6E-21 205.1 33.7 203 661-903 596-829 (850)
118 TIGR00348 hsdR type I site-spe 99.7 2.4E-15 5.2E-20 190.5 28.8 343 496-887 239-647 (667)
119 PLN03142 Probable chromatin-re 99.7 1.3E-14 2.8E-19 186.8 29.5 325 495-891 169-601 (1033)
120 KOG4150 Predicted ATP-dependen 99.6 4E-15 8.8E-20 170.1 19.6 355 485-896 274-648 (1034)
121 COG4096 HsdR Type I site-speci 99.6 1.8E-14 3.9E-19 174.6 25.9 309 493-874 163-525 (875)
122 TIGR00631 uvrb excinuclease AB 99.6 1.1E-13 2.5E-18 173.4 31.5 115 732-891 441-555 (655)
123 PRK07246 bifunctional ATP-depe 99.6 2.1E-13 4.6E-18 175.7 32.0 82 491-585 242-327 (820)
124 smart00487 DEXDc DEAD-like hel 99.6 1.6E-14 3.6E-19 155.0 18.4 166 492-675 5-175 (201)
125 PRK05298 excinuclease ABC subu 99.6 3.2E-13 6.9E-18 170.7 32.0 114 732-890 445-558 (652)
126 PRK08074 bifunctional ATP-depe 99.6 5.8E-13 1.3E-17 174.8 35.2 135 733-903 752-908 (928)
127 KOG0953 Mitochondrial RNA heli 99.6 3.2E-14 6.8E-19 164.2 18.8 290 512-899 192-486 (700)
128 PRK12326 preprotein translocas 99.6 4.7E-13 1E-17 163.2 29.2 127 495-635 78-210 (764)
129 KOG1123 RNA polymerase II tran 99.6 4.8E-15 1E-19 168.0 10.4 365 443-895 257-659 (776)
130 PRK12900 secA preprotein trans 99.5 3.7E-13 8.1E-18 168.2 24.3 133 732-915 597-749 (1025)
131 COG0556 UvrB Helicase subunit 99.5 7E-13 1.5E-17 153.0 24.2 171 659-888 385-556 (663)
132 PRK14873 primosome assembly pr 99.5 1.1E-13 2.3E-18 173.1 17.8 329 518-888 167-538 (665)
133 COG1110 Reverse gyrase [DNA re 99.5 1.8E-12 3.9E-17 159.3 25.7 279 495-853 82-417 (1187)
134 PRK13103 secA preprotein trans 99.5 5.3E-12 1.2E-16 157.7 28.9 127 495-635 82-214 (913)
135 cd00046 DEXDc DEAD-like helica 99.5 9.7E-13 2.1E-17 132.8 14.9 141 512-670 1-144 (144)
136 KOG0921 Dosage compensation co 99.4 6.6E-13 1.4E-17 159.5 13.7 421 505-1017 387-863 (1282)
137 TIGR03117 cas_csf4 CRISPR-asso 99.4 7.1E-11 1.5E-15 146.1 29.9 60 506-574 11-70 (636)
138 PF04851 ResIII: Type III rest 99.4 1.7E-12 3.6E-17 138.5 13.0 150 495-670 3-182 (184)
139 cd00079 HELICc Helicase superf 99.4 2E-12 4.4E-17 129.8 12.2 105 732-885 27-131 (131)
140 PF00271 Helicase_C: Helicase 99.4 1.5E-12 3.2E-17 119.0 8.2 73 793-875 6-78 (78)
141 PRK11747 dinG ATP-dependent DN 99.4 3.6E-10 7.7E-15 144.3 32.9 144 716-903 520-689 (697)
142 COG1199 DinG Rad3-related DNA 99.4 7.8E-11 1.7E-15 151.2 26.6 199 662-903 405-632 (654)
143 COG5407 SEC63 Preprotein trans 99.3 7.3E-12 1.6E-16 140.7 13.4 262 1007-1297 226-541 (610)
144 TIGR02562 cas3_yersinia CRISPR 99.3 5.5E-10 1.2E-14 140.9 28.7 160 497-672 410-636 (1110)
145 COG4889 Predicted helicase [Ge 99.3 3.6E-11 7.9E-16 144.1 15.4 340 492-886 158-583 (1518)
146 CHL00122 secA preprotein trans 99.3 9.2E-10 2E-14 137.4 28.1 126 495-635 76-208 (870)
147 PRK12903 secA preprotein trans 99.3 9.8E-10 2.1E-14 136.3 28.0 127 495-635 78-210 (925)
148 TIGR00604 rad3 DNA repair heli 99.2 4.7E-09 1E-13 135.2 32.9 73 492-572 7-82 (705)
149 KOG0385 Chromatin remodeling c 99.2 7.8E-10 1.7E-14 132.5 22.5 328 494-892 166-602 (971)
150 PRK12902 secA preprotein trans 99.2 4.8E-09 1E-13 130.8 29.4 127 495-635 85-217 (939)
151 KOG1000 Chromatin remodeling p 99.2 6.8E-09 1.5E-13 119.0 27.2 152 494-670 197-348 (689)
152 KOG0390 DNA repair protein, SN 99.2 1.1E-08 2.3E-13 127.1 28.6 365 494-889 237-707 (776)
153 smart00490 HELICc helicase sup 99.1 2.8E-10 6E-15 104.2 7.6 72 794-875 11-82 (82)
154 PF02399 Herpes_ori_bp: Origin 99.0 4.5E-08 9.7E-13 121.2 25.3 303 511-889 49-388 (824)
155 KOG0384 Chromodomain-helicase 98.9 8.1E-08 1.8E-12 120.9 20.5 323 494-891 369-813 (1373)
156 KOG0387 Transcription-coupled 98.9 3.3E-07 7.1E-12 111.2 24.7 129 493-638 203-352 (923)
157 PF07652 Flavi_DEAD: Flaviviru 98.8 1.8E-08 3.9E-13 100.6 10.9 134 511-672 4-138 (148)
158 PRK12901 secA preprotein trans 98.8 2.8E-07 6E-12 116.5 22.1 126 496-635 170-302 (1112)
159 KOG0392 SNF2 family DNA-depend 98.7 2.2E-07 4.8E-12 116.6 17.7 157 495-669 975-1137(1549)
160 PF00176 SNF2_N: SNF2 family N 98.7 7.3E-08 1.6E-12 111.4 11.6 167 499-681 1-185 (299)
161 KOG0389 SNF2 family DNA-depend 98.6 1.5E-06 3.3E-11 105.5 20.8 377 495-910 399-910 (941)
162 PF06862 DUF1253: Protein of u 98.6 1.3E-05 2.9E-10 95.2 26.9 297 549-891 36-417 (442)
163 smart00489 DEXDc3 DEAD-like he 98.6 5.2E-07 1.1E-11 103.7 13.2 73 496-573 9-84 (289)
164 smart00488 DEXDc2 DEAD-like he 98.6 5.2E-07 1.1E-11 103.7 13.2 73 496-573 9-84 (289)
165 KOG2340 Uncharacterized conser 98.5 4.5E-06 9.9E-11 97.2 18.5 347 494-890 215-669 (698)
166 KOG4439 RNA polymerase II tran 98.4 3.1E-05 6.6E-10 93.2 21.4 142 495-638 325-478 (901)
167 COG0610 Type I site-specific r 98.4 4.4E-05 9.5E-10 100.7 25.2 137 512-669 274-412 (962)
168 KOG1002 Nucleotide excision re 98.2 3.7E-05 8.1E-10 88.8 17.8 165 497-684 186-373 (791)
169 PF07517 SecA_DEAD: SecA DEAD- 98.0 2.3E-05 4.9E-10 88.0 11.2 128 495-636 77-210 (266)
170 COG0653 SecA Preprotein transl 98.0 0.00014 3.1E-09 91.4 19.0 111 514-635 96-212 (822)
171 PF13086 AAA_11: AAA domain; P 98.0 2.4E-05 5.2E-10 86.7 11.0 75 495-572 1-75 (236)
172 PRK15483 type III restriction- 97.9 9.1E-05 2E-09 95.1 14.1 53 820-882 501-553 (986)
173 PF02562 PhoH: PhoH-like prote 97.9 7.1E-05 1.5E-09 80.8 10.7 145 493-667 2-153 (205)
174 PF13604 AAA_30: AAA domain; P 97.8 9.4E-05 2E-09 80.2 10.7 64 495-569 1-65 (196)
175 KOG0388 SNF2 family DNA-depend 97.7 0.0016 3.5E-08 78.6 19.7 84 797-890 1071-1155(1185)
176 KOG1802 RNA helicase nonsense 97.7 0.00013 2.9E-09 87.3 10.8 80 491-585 406-485 (935)
177 KOG0386 Chromatin remodeling c 97.7 0.00039 8.4E-09 87.2 15.1 127 494-637 393-529 (1157)
178 TIGR00376 DNA helicase, putati 97.7 0.00025 5.3E-09 90.1 13.3 68 494-572 156-223 (637)
179 KOG1803 DNA helicase [Replicat 97.6 0.00016 3.6E-09 86.6 8.4 67 494-571 184-250 (649)
180 PRK10536 hypothetical protein; 97.5 0.00019 4.1E-09 79.6 7.1 60 492-561 56-115 (262)
181 PF13245 AAA_19: Part of AAA d 97.5 0.00042 9.1E-09 62.9 8.0 61 503-570 2-62 (76)
182 PF13307 Helicase_C_2: Helicas 97.3 0.00053 1.1E-08 72.4 7.2 129 733-899 9-161 (167)
183 PF12340 DUF3638: Protein of u 97.2 0.0017 3.7E-08 70.9 9.5 145 481-636 9-185 (229)
184 TIGR01447 recD exodeoxyribonuc 97.0 0.0072 1.6E-07 76.1 14.0 70 498-574 148-217 (586)
185 PF00580 UvrD-helicase: UvrD/R 96.9 0.0017 3.8E-08 75.4 7.5 123 496-633 1-125 (315)
186 TIGR00596 rad1 DNA repair prot 96.9 0.05 1.1E-06 70.6 20.9 52 1144-1195 759-810 (814)
187 PRK10875 recD exonuclease V su 96.9 0.0053 1.2E-07 77.4 11.7 72 496-575 153-224 (615)
188 TIGR02768 TraA_Ti Ti-type conj 96.9 0.0084 1.8E-07 77.8 13.7 63 494-567 351-413 (744)
189 PRK13889 conjugal transfer rel 96.8 0.008 1.7E-07 79.1 13.3 62 494-566 345-406 (988)
190 PF09848 DUF2075: Uncharacteri 96.8 0.0034 7.4E-08 74.6 8.4 95 513-637 3-97 (352)
191 PF13872 AAA_34: P-loop contai 96.7 0.01 2.2E-07 67.3 11.3 161 495-671 37-221 (303)
192 PF13401 AAA_22: AAA domain; P 96.7 0.0036 7.8E-08 62.8 7.0 26 510-535 3-28 (131)
193 TIGR01448 recD_rel helicase, p 96.7 0.014 3E-07 75.6 13.7 64 494-567 322-385 (720)
194 COG3587 Restriction endonuclea 96.7 0.007 1.5E-07 75.5 10.2 57 818-884 481-537 (985)
195 cd00009 AAA The AAA+ (ATPases 96.6 0.0094 2E-07 60.1 9.5 22 511-532 19-40 (151)
196 COG3421 Uncharacterized protei 96.5 0.069 1.5E-06 64.4 16.3 149 516-678 2-173 (812)
197 PRK12723 flagellar biosynthesi 96.4 0.041 9E-07 65.6 14.5 132 512-681 175-307 (388)
198 PRK13826 Dtr system oriT relax 96.3 0.034 7.4E-07 73.8 14.2 64 493-567 379-442 (1102)
199 PRK12377 putative replication 96.2 0.049 1.1E-06 61.2 12.7 48 511-570 101-148 (248)
200 PF00448 SRP54: SRP54-type pro 96.2 0.054 1.2E-06 58.8 12.4 129 513-678 3-132 (196)
201 COG1875 NYN ribonuclease and A 96.1 0.01 2.2E-07 68.0 6.8 64 492-563 225-289 (436)
202 PTZ00112 origin recognition co 96.1 0.069 1.5E-06 68.0 14.5 41 513-557 782-823 (1164)
203 PF05970 PIF1: PIF1-like helic 96.1 0.017 3.6E-07 69.0 8.9 61 495-566 1-66 (364)
204 KOG1132 Helicase of the DEAD s 96.1 0.029 6.2E-07 70.6 10.9 80 495-574 21-134 (945)
205 PHA03333 putative ATPase subun 96.0 0.17 3.6E-06 63.3 17.0 156 496-681 170-342 (752)
206 PRK06526 transposase; Provisio 95.9 0.048 1.1E-06 61.6 11.0 28 509-536 96-123 (254)
207 PRK11054 helD DNA helicase IV; 95.9 0.017 3.6E-07 74.1 8.1 84 494-608 195-278 (684)
208 PRK10919 ATP-dependent DNA hel 95.9 0.015 3.2E-07 75.0 7.7 92 495-614 2-94 (672)
209 KOG0391 SNF2 family DNA-depend 95.8 0.031 6.7E-07 71.4 9.5 139 495-648 615-762 (1958)
210 PRK14722 flhF flagellar biosyn 95.8 0.099 2.2E-06 62.0 13.4 127 509-677 135-263 (374)
211 TIGR02881 spore_V_K stage V sp 95.8 0.053 1.1E-06 61.7 10.7 21 512-532 43-63 (261)
212 PRK07952 DNA replication prote 95.8 0.16 3.5E-06 57.0 14.2 26 512-538 100-125 (244)
213 PF05621 TniB: Bacterial TniB 95.7 0.04 8.6E-07 62.7 9.3 125 512-666 62-186 (302)
214 COG1444 Predicted P-loop ATPas 95.7 0.16 3.5E-06 64.4 15.3 145 495-674 214-360 (758)
215 COG1419 FlhF Flagellar GTP-bin 95.7 0.29 6.4E-06 57.8 16.3 142 511-705 203-345 (407)
216 smart00382 AAA ATPases associa 95.6 0.025 5.5E-07 56.3 6.7 44 511-565 2-45 (148)
217 KOG1805 DNA replication helica 95.6 0.048 1E-06 69.2 10.1 122 493-636 667-809 (1100)
218 PRK08903 DnaA regulatory inact 95.5 0.13 2.8E-06 57.1 12.3 34 497-530 25-61 (227)
219 PRK11889 flhF flagellar biosyn 95.4 0.22 4.8E-06 58.9 14.2 129 512-681 242-372 (436)
220 PRK14974 cell division protein 95.4 0.16 3.4E-06 59.6 13.1 122 512-672 141-266 (336)
221 PF05127 Helicase_RecD: Helica 95.4 0.0046 1E-07 65.3 0.3 129 515-676 1-129 (177)
222 smart00492 HELICc3 helicase su 95.3 0.077 1.7E-06 54.3 8.8 87 797-885 24-135 (141)
223 cd01120 RecA-like_NTPases RecA 95.3 0.087 1.9E-06 54.4 9.4 39 514-563 2-40 (165)
224 PRK04296 thymidine kinase; Pro 95.2 0.036 7.9E-07 59.8 6.6 35 513-558 4-38 (190)
225 TIGR01547 phage_term_2 phage t 95.2 0.22 4.9E-06 60.2 14.0 137 513-672 3-142 (396)
226 PRK08727 hypothetical protein; 95.2 0.14 3.1E-06 57.1 11.4 35 512-557 42-76 (233)
227 CHL00181 cbbX CbbX; Provisiona 95.1 0.18 3.9E-06 58.1 12.4 21 512-532 60-80 (287)
228 KOG0989 Replication factor C, 95.1 0.11 2.4E-06 58.5 10.0 45 620-671 126-170 (346)
229 PF00308 Bac_DnaA: Bacterial d 95.1 0.32 6.9E-06 53.8 13.8 123 497-672 16-142 (219)
230 TIGR02928 orc1/cdc6 family rep 95.1 0.2 4.4E-06 59.8 13.2 26 511-537 40-65 (365)
231 PRK11773 uvrD DNA-dependent he 95.1 0.041 8.8E-07 71.8 7.7 92 494-614 8-100 (721)
232 cd01124 KaiC KaiC is a circadi 95.0 0.031 6.7E-07 59.8 5.4 47 514-572 2-48 (187)
233 PRK05703 flhF flagellar biosyn 95.0 0.31 6.7E-06 59.3 14.5 129 511-681 221-352 (424)
234 PRK14964 DNA polymerase III su 95.0 0.099 2.2E-06 64.2 10.1 42 619-667 112-153 (491)
235 TIGR01074 rep ATP-dependent DN 95.0 0.051 1.1E-06 70.4 8.1 86 495-608 1-86 (664)
236 PRK08116 hypothetical protein; 94.9 0.41 8.8E-06 54.7 14.4 81 476-569 69-160 (268)
237 PRK06645 DNA polymerase III su 94.9 0.16 3.5E-06 62.8 11.6 21 512-532 44-64 (507)
238 COG4962 CpaF Flp pilus assembl 94.9 0.11 2.4E-06 59.7 9.3 62 490-563 152-213 (355)
239 TIGR03420 DnaA_homol_Hda DnaA 94.9 0.13 2.9E-06 56.8 10.0 23 510-532 37-59 (226)
240 PRK14960 DNA polymerase III su 94.8 0.094 2E-06 65.7 9.1 32 501-532 24-58 (702)
241 PRK14956 DNA polymerase III su 94.8 0.13 2.8E-06 62.7 10.1 29 504-532 30-61 (484)
242 TIGR01075 uvrD DNA helicase II 94.8 0.067 1.4E-06 69.8 8.4 110 494-634 3-114 (715)
243 PRK13833 conjugal transfer pro 94.7 0.067 1.5E-06 62.3 7.3 60 494-562 127-186 (323)
244 PRK08691 DNA polymerase III su 94.7 0.14 3E-06 64.8 10.3 41 620-667 116-156 (709)
245 TIGR02760 TraI_TIGR conjugativ 94.6 1.6 3.5E-05 62.6 21.8 218 495-760 429-653 (1960)
246 cd01122 GP4d_helicase GP4d_hel 94.5 0.19 4E-06 57.5 10.5 54 508-572 27-80 (271)
247 TIGR02782 TrbB_P P-type conjug 94.5 0.093 2E-06 60.8 8.0 60 494-562 115-174 (299)
248 PRK07003 DNA polymerase III su 94.5 0.16 3.4E-06 64.5 10.2 40 622-668 118-157 (830)
249 PRK12727 flagellar biosynthesi 94.5 0.46 1E-05 58.4 13.9 129 510-681 349-479 (559)
250 PF00004 AAA: ATPase family as 94.4 0.14 3E-06 51.1 7.9 46 624-669 59-111 (132)
251 PHA03368 DNA packaging termina 94.3 0.53 1.2E-05 58.8 14.0 136 507-670 251-390 (738)
252 PHA02533 17 large terminase pr 94.3 0.53 1.1E-05 58.9 14.3 149 495-669 59-209 (534)
253 PRK05973 replicative DNA helic 94.3 0.6 1.3E-05 52.1 13.2 129 509-669 62-192 (237)
254 PRK00411 cdc6 cell division co 94.3 0.38 8.2E-06 58.2 12.8 26 511-537 55-80 (394)
255 PRK13894 conjugal transfer ATP 94.2 0.093 2E-06 61.2 7.1 60 494-562 131-190 (319)
256 PRK07994 DNA polymerase III su 94.2 0.31 6.6E-06 61.9 12.0 40 621-667 117-156 (647)
257 PF05876 Terminase_GpA: Phage 94.2 0.093 2E-06 66.0 7.5 163 494-678 15-189 (557)
258 PRK14958 DNA polymerase III su 94.2 0.2 4.2E-06 62.4 10.2 39 622-667 118-156 (509)
259 PRK14087 dnaA chromosomal repl 94.1 0.25 5.5E-06 60.6 10.9 48 513-570 143-190 (450)
260 PRK06893 DNA replication initi 94.1 0.22 4.8E-06 55.5 9.5 25 512-537 40-64 (229)
261 PRK08769 DNA polymerase III su 94.0 0.65 1.4E-05 54.2 13.5 39 494-532 3-47 (319)
262 PRK12323 DNA polymerase III su 94.0 0.32 6.8E-06 61.1 11.3 41 621-668 122-162 (700)
263 PRK14949 DNA polymerase III su 94.0 0.16 3.5E-06 65.7 8.9 38 622-666 118-155 (944)
264 PRK12726 flagellar biosynthesi 93.9 0.53 1.1E-05 55.6 12.4 131 510-681 205-337 (407)
265 PRK05707 DNA polymerase III su 93.9 0.36 7.7E-06 56.7 11.1 37 496-532 4-43 (328)
266 TIGR01073 pcrA ATP-dependent D 93.9 0.13 2.9E-06 67.2 8.4 86 494-608 3-88 (726)
267 PRK14961 DNA polymerase III su 93.9 0.2 4.4E-06 59.8 9.3 41 620-667 116-156 (363)
268 TIGR02880 cbbX_cfxQ probable R 93.8 0.32 7E-06 56.0 10.5 20 512-531 59-78 (284)
269 PRK12402 replication factor C 93.7 0.22 4.8E-06 58.7 9.2 35 497-531 20-56 (337)
270 PRK08181 transposase; Validate 93.6 0.5 1.1E-05 53.9 11.2 60 497-568 89-151 (269)
271 TIGR03877 thermo_KaiC_1 KaiC d 93.5 0.44 9.6E-06 53.3 10.6 50 511-572 21-70 (237)
272 PRK00149 dnaA chromosomal repl 93.5 0.41 8.9E-06 59.0 11.3 49 512-570 149-197 (450)
273 COG0553 HepA Superfamily II DN 93.4 0.22 4.9E-06 66.6 9.6 87 795-891 736-824 (866)
274 PF03796 DnaB_C: DnaB-like hel 93.4 0.34 7.4E-06 55.0 9.7 143 510-669 18-179 (259)
275 PRK05642 DNA replication initi 93.3 0.17 3.8E-06 56.5 7.0 36 512-558 46-81 (234)
276 cd00984 DnaB_C DnaB helicase C 93.3 0.42 9.2E-06 53.5 10.2 40 509-558 11-50 (242)
277 COG1474 CDC6 Cdc6-related prot 93.3 0.23 4.9E-06 59.2 8.2 27 511-538 42-68 (366)
278 PRK14951 DNA polymerase III su 93.3 0.48 1E-05 59.9 11.5 41 620-667 121-161 (618)
279 COG2256 MGS1 ATPase related to 93.3 0.39 8.5E-06 56.2 9.7 29 503-531 38-68 (436)
280 PRK14962 DNA polymerase III su 93.3 0.44 9.6E-06 58.7 10.9 32 501-532 23-57 (472)
281 PRK14959 DNA polymerase III su 93.3 0.41 8.8E-06 60.3 10.7 32 501-532 25-59 (624)
282 PRK14955 DNA polymerase III su 93.2 0.42 9.1E-06 57.9 10.6 30 503-532 27-59 (397)
283 PRK14712 conjugal transfer nic 93.2 0.45 9.8E-06 65.6 11.6 64 495-567 835-901 (1623)
284 PRK11823 DNA repair protein Ra 93.1 0.59 1.3E-05 57.3 11.7 98 504-637 69-170 (446)
285 PRK08084 DNA replication initi 93.1 0.9 2E-05 50.8 12.2 34 496-529 28-63 (235)
286 TIGR02760 TraI_TIGR conjugativ 93.1 0.44 9.4E-06 68.2 11.7 65 493-567 1017-1085(1960)
287 PRK05563 DNA polymerase III su 93.0 0.87 1.9E-05 57.5 13.2 31 502-532 26-59 (559)
288 TIGR02785 addA_Gpos recombinat 93.0 0.2 4.3E-06 69.2 8.1 124 495-634 1-126 (1232)
289 cd01121 Sms Sms (bacterial rad 92.9 0.75 1.6E-05 54.9 11.9 90 511-636 82-171 (372)
290 PRK07764 DNA polymerase III su 92.9 0.55 1.2E-05 61.5 11.5 41 620-667 117-157 (824)
291 PRK12724 flagellar biosynthesi 92.8 1.8 3.8E-05 52.1 14.6 51 512-572 224-276 (432)
292 PRK09111 DNA polymerase III su 92.8 0.79 1.7E-05 58.1 12.4 42 619-667 128-169 (598)
293 PRK14952 DNA polymerase III su 92.8 0.67 1.4E-05 58.5 11.6 41 620-667 115-155 (584)
294 PRK14965 DNA polymerase III su 92.7 0.96 2.1E-05 57.4 13.1 42 619-667 115-156 (576)
295 PF01695 IstB_IS21: IstB-like 92.7 0.22 4.8E-06 53.1 6.4 47 508-566 44-90 (178)
296 KOG0391 SNF2 family DNA-depend 92.6 0.73 1.6E-05 59.7 11.4 81 800-890 1306-1388(1958)
297 PLN03025 replication factor C 92.6 1 2.2E-05 52.9 12.3 31 501-531 22-54 (319)
298 PRK10416 signal recognition pa 92.6 2.1 4.6E-05 50.1 14.7 125 511-671 114-245 (318)
299 TIGR00362 DnaA chromosomal rep 92.6 0.66 1.4E-05 56.4 11.0 44 513-566 138-181 (405)
300 PRK06904 replicative DNA helic 92.5 0.68 1.5E-05 57.2 11.0 145 507-669 217-383 (472)
301 PRK14963 DNA polymerase III su 92.5 0.61 1.3E-05 58.0 10.6 23 514-537 39-61 (504)
302 PRK14957 DNA polymerase III su 92.5 0.49 1.1E-05 59.1 9.8 41 620-667 116-156 (546)
303 COG0553 HepA Superfamily II DN 92.4 0.55 1.2E-05 62.9 11.1 136 493-638 336-487 (866)
304 PRK13709 conjugal transfer nic 92.3 0.76 1.7E-05 64.3 12.2 66 495-567 967-1033(1747)
305 TIGR00064 ftsY signal recognit 92.3 2.3 5E-05 48.7 14.2 52 512-574 73-126 (272)
306 PRK14721 flhF flagellar biosyn 92.2 1.9 4.2E-05 52.1 14.1 130 510-681 190-321 (420)
307 PRK06921 hypothetical protein; 92.2 0.5 1.1E-05 53.8 8.8 44 511-565 117-160 (266)
308 PRK13851 type IV secretion sys 92.1 0.16 3.6E-06 59.7 4.9 54 498-563 149-202 (344)
309 PF03354 Terminase_1: Phage Te 92.1 0.51 1.1E-05 58.6 9.5 72 498-576 1-80 (477)
310 TIGR00678 holB DNA polymerase 92.1 1 2.2E-05 48.4 10.6 50 611-667 84-133 (188)
311 TIGR03015 pepcterm_ATPase puta 92.1 0.45 9.7E-06 54.2 8.3 36 495-530 23-62 (269)
312 COG3973 Superfamily I DNA and 92.1 0.42 9E-06 58.3 8.1 69 495-570 212-280 (747)
313 PRK06964 DNA polymerase III su 92.0 2.2 4.7E-05 50.4 13.9 55 608-669 117-171 (342)
314 COG0470 HolB ATPase involved i 92.0 0.7 1.5E-05 54.0 10.0 52 610-668 96-147 (325)
315 PRK05896 DNA polymerase III su 91.8 0.79 1.7E-05 57.5 10.5 41 620-667 116-156 (605)
316 cd01130 VirB11-like_ATPase Typ 91.8 0.25 5.4E-06 53.1 5.5 36 493-528 7-42 (186)
317 PRK12422 chromosomal replicati 91.8 0.67 1.5E-05 56.8 9.8 44 512-567 142-185 (445)
318 PRK04328 hypothetical protein; 91.8 1.4 3.1E-05 49.7 11.8 49 511-571 23-71 (249)
319 PRK08451 DNA polymerase III su 91.7 1.2 2.7E-05 55.4 12.0 41 620-667 114-154 (535)
320 PRK14969 DNA polymerase III su 91.7 1.8 4E-05 54.3 13.7 41 620-667 116-156 (527)
321 PRK14723 flhF flagellar biosyn 91.5 1.7 3.6E-05 56.1 13.1 125 511-677 185-311 (767)
322 smart00491 HELICc2 helicase su 91.4 0.36 7.9E-06 49.5 5.9 80 804-885 28-136 (142)
323 PRK14088 dnaA chromosomal repl 91.3 2 4.4E-05 52.7 13.3 46 512-567 131-176 (440)
324 TIGR02012 tigrfam_recA protein 91.3 0.45 9.8E-06 55.4 7.2 44 511-565 55-98 (321)
325 PRK05748 replicative DNA helic 91.2 0.84 1.8E-05 56.2 10.0 145 508-669 200-364 (448)
326 PRK00771 signal recognition pa 91.2 1.4 3E-05 53.7 11.5 50 512-572 96-147 (437)
327 PRK08760 replicative DNA helic 91.2 0.85 1.8E-05 56.4 9.9 144 508-669 226-388 (476)
328 PRK06731 flhF flagellar biosyn 91.0 3.5 7.6E-05 47.0 13.8 129 511-681 75-206 (270)
329 cd03115 SRP The signal recogni 91.0 2.1 4.5E-05 45.3 11.4 21 513-533 2-22 (173)
330 PRK06871 DNA polymerase III su 91.0 2.7 5.8E-05 49.3 13.1 44 619-669 103-146 (325)
331 TIGR03600 phage_DnaB phage rep 90.9 0.91 2E-05 55.5 9.8 145 508-669 191-353 (421)
332 PRK09112 DNA polymerase III su 90.9 1.4 3E-05 52.3 10.9 41 620-667 138-178 (351)
333 PRK09354 recA recombinase A; P 90.9 0.59 1.3E-05 54.9 7.7 44 511-565 60-103 (349)
334 cd00983 recA RecA is a bacter 90.8 0.48 1E-05 55.3 6.8 44 511-565 55-98 (325)
335 TIGR00665 DnaB replicative DNA 90.8 1.1 2.4E-05 55.0 10.4 143 509-669 193-354 (434)
336 PRK14954 DNA polymerase III su 90.8 1.2 2.6E-05 56.7 10.7 42 619-667 123-164 (620)
337 PF13177 DNA_pol3_delta2: DNA 90.7 1.9 4.1E-05 45.3 10.6 53 611-670 90-142 (162)
338 PRK04195 replication factor C 90.7 1.7 3.7E-05 54.1 12.0 20 511-530 39-58 (482)
339 COG0630 VirB11 Type IV secreto 90.6 0.71 1.5E-05 53.8 8.0 58 493-562 125-182 (312)
340 PRK13342 recombination factor 90.6 0.94 2E-05 55.2 9.4 27 504-530 27-55 (413)
341 KOG0298 DEAD box-containing he 90.6 0.94 2E-05 59.6 9.5 165 509-684 372-568 (1394)
342 PRK05636 replicative DNA helic 90.4 0.81 1.7E-05 56.9 8.7 144 508-669 262-424 (505)
343 PRK14950 DNA polymerase III su 90.4 1.3 2.9E-05 56.3 10.9 20 513-532 40-59 (585)
344 PRK13900 type IV secretion sys 90.4 0.33 7.1E-06 57.1 5.0 51 500-562 149-199 (332)
345 TIGR03499 FlhF flagellar biosy 90.4 1.1 2.3E-05 51.7 9.1 54 511-573 194-249 (282)
346 PF00437 T2SE: Type II/IV secr 90.3 0.27 6E-06 56.1 4.3 54 498-562 114-167 (270)
347 PRK07133 DNA polymerase III su 90.2 1.2 2.6E-05 57.1 10.0 42 619-667 114-155 (725)
348 TIGR03878 thermo_KaiC_2 KaiC d 90.2 1.4 3.1E-05 50.0 9.8 37 511-558 36-72 (259)
349 PRK14948 DNA polymerase III su 90.1 1.6 3.5E-05 55.7 11.2 41 620-667 118-158 (620)
350 KOG1015 Transcription regulato 90.0 2.2 4.7E-05 54.5 11.6 194 521-731 706-924 (1567)
351 PRK07940 DNA polymerase III su 89.9 3.4 7.4E-05 49.8 13.2 20 513-532 38-57 (394)
352 PRK07004 replicative DNA helic 89.8 1.5 3.2E-05 54.1 10.3 145 508-669 210-373 (460)
353 PRK13341 recombination factor 89.8 1.5 3.2E-05 56.9 10.6 20 512-531 53-72 (725)
354 KOG0733 Nuclear AAA ATPase (VC 89.8 0.73 1.6E-05 56.4 7.2 17 512-528 546-562 (802)
355 PRK11034 clpA ATP-dependent Cl 89.6 2.4 5.2E-05 55.3 12.4 24 510-533 206-229 (758)
356 CHL00095 clpC Clp protease ATP 89.6 1.1 2.4E-05 59.5 9.5 25 510-534 199-223 (821)
357 TIGR02639 ClpA ATP-dependent C 89.4 1.5 3.4E-05 57.3 10.7 25 511-535 203-227 (731)
358 PF04408 HA2: Helicase associa 89.4 0.2 4.4E-06 48.2 1.9 64 975-1045 2-65 (102)
359 cd01129 PulE-GspE PulE/GspE Th 89.4 0.73 1.6E-05 52.5 6.7 40 496-536 64-104 (264)
360 PHA02544 44 clamp loader, smal 89.3 2.7 5.8E-05 49.2 11.6 31 500-530 29-62 (316)
361 KOG1001 Helicase-like transcri 89.3 1.7 3.8E-05 55.5 10.5 115 514-638 155-269 (674)
362 PRK05595 replicative DNA helic 89.3 1.1 2.5E-05 55.0 8.8 144 508-669 198-360 (444)
363 cd01393 recA_like RecA is a b 89.2 0.88 1.9E-05 50.3 7.1 45 511-560 19-63 (226)
364 PRK14971 DNA polymerase III su 89.0 2.5 5.4E-05 54.0 11.7 42 619-667 117-158 (614)
365 PF05729 NACHT: NACHT domain 88.9 2.5 5.3E-05 43.7 9.9 53 626-681 84-140 (166)
366 PRK07471 DNA polymerase III su 88.9 3.9 8.4E-05 48.9 12.6 23 513-535 43-65 (365)
367 PRK06067 flagellar accessory p 88.8 0.82 1.8E-05 51.0 6.5 50 511-572 25-74 (234)
368 PRK06305 DNA polymerase III su 88.8 2.2 4.9E-05 52.4 10.8 22 513-534 41-62 (451)
369 KOG2028 ATPase related to the 88.8 0.69 1.5E-05 53.1 5.7 61 500-571 149-211 (554)
370 TIGR03689 pup_AAA proteasome A 88.7 1.1 2.5E-05 55.3 8.1 19 511-529 216-234 (512)
371 PRK10436 hypothetical protein; 88.7 0.77 1.7E-05 56.4 6.6 41 496-537 202-243 (462)
372 PRK08506 replicative DNA helic 88.7 1.3 2.9E-05 54.8 8.7 144 508-669 189-351 (472)
373 KOG0738 AAA+-type ATPase [Post 88.6 0.35 7.7E-06 56.1 3.4 65 624-689 305-378 (491)
374 PRK06647 DNA polymerase III su 88.6 1.8 3.9E-05 54.6 9.9 30 503-532 27-59 (563)
375 TIGR01425 SRP54_euk signal rec 88.6 4.8 0.0001 48.8 13.1 121 512-671 101-225 (429)
376 PRK14086 dnaA chromosomal repl 88.5 2.2 4.8E-05 53.7 10.5 47 513-569 316-362 (617)
377 COG0593 DnaA ATPase involved i 88.4 2.6 5.7E-05 50.5 10.6 44 623-672 175-220 (408)
378 PRK10917 ATP-dependent DNA hel 88.4 2 4.3E-05 55.8 10.4 80 732-844 309-389 (681)
379 PRK14970 DNA polymerase III su 88.3 4.4 9.4E-05 48.6 12.7 35 501-536 26-63 (367)
380 PRK14873 primosome assembly pr 88.3 2.1 4.5E-05 55.0 10.3 76 733-844 188-263 (665)
381 PF06745 KaiC: KaiC; InterPro 88.2 0.99 2.1E-05 50.0 6.7 51 511-572 19-69 (226)
382 COG1484 DnaC DNA replication p 88.2 1.3 2.8E-05 50.2 7.6 53 507-571 101-153 (254)
383 PRK06835 DNA replication prote 88.2 1.4 3.1E-05 51.7 8.2 45 510-566 182-226 (329)
384 PRK08840 replicative DNA helic 88.1 2.8 6.1E-05 51.7 11.0 145 508-669 214-378 (464)
385 PRK14953 DNA polymerase III su 88.1 1.9 4.2E-05 53.4 9.6 19 514-532 41-59 (486)
386 TIGR02397 dnaX_nterm DNA polym 88.0 3.5 7.7E-05 48.9 11.7 23 513-536 38-60 (355)
387 TIGR02538 type_IV_pilB type IV 87.9 0.86 1.9E-05 57.7 6.6 40 496-536 300-340 (564)
388 TIGR02525 plasmid_TraJ plasmid 87.9 0.96 2.1E-05 53.9 6.6 32 506-538 144-175 (372)
389 TIGR03881 KaiC_arch_4 KaiC dom 87.8 3.4 7.4E-05 45.8 10.6 38 510-558 19-56 (229)
390 PRK08006 replicative DNA helic 87.7 3.3 7.2E-05 51.2 11.3 145 508-669 221-385 (471)
391 PRK09361 radB DNA repair and r 87.7 2.3 4.9E-05 47.1 9.1 38 511-559 23-60 (225)
392 COG1219 ClpX ATP-dependent pro 87.6 0.38 8.3E-06 54.4 2.8 19 511-529 97-115 (408)
393 COG2812 DnaX DNA polymerase II 87.6 0.85 1.8E-05 56.2 6.0 43 617-666 113-155 (515)
394 PRK05986 cob(I)alamin adenolsy 87.6 3.1 6.8E-05 44.7 9.6 42 510-562 21-62 (191)
395 PRK00440 rfc replication facto 87.6 2.5 5.5E-05 49.2 9.9 30 501-530 26-57 (319)
396 KOG0741 AAA+-type ATPase [Post 87.6 1.2 2.6E-05 53.7 6.9 17 512-528 257-273 (744)
397 PHA03372 DNA packaging termina 87.4 4.7 0.0001 50.1 11.9 143 508-681 200-347 (668)
398 PRK06090 DNA polymerase III su 87.3 6.4 0.00014 46.0 12.7 44 619-669 104-147 (319)
399 KOG0741 AAA+-type ATPase [Post 87.1 2 4.3E-05 51.9 8.3 51 619-669 594-648 (744)
400 CHL00176 ftsH cell division pr 87.0 1.5 3.3E-05 56.0 8.0 45 625-669 277-328 (638)
401 PRK07993 DNA polymerase III su 86.9 2.6 5.7E-05 49.7 9.4 45 618-669 103-147 (334)
402 KOG2228 Origin recognition com 86.7 7.3 0.00016 45.0 12.1 43 625-671 139-182 (408)
403 TIGR02524 dot_icm_DotB Dot/Icm 86.4 1.4 3E-05 52.4 6.8 30 508-538 131-160 (358)
404 PRK10263 DNA translocase FtsK; 86.3 3.2 7E-05 55.8 10.5 56 625-683 1142-1197(1355)
405 PRK06995 flhF flagellar biosyn 86.2 1.4 3.1E-05 54.0 6.9 55 511-574 256-312 (484)
406 PRK03992 proteasome-activating 86.2 1.1 2.4E-05 54.1 6.0 20 511-530 165-184 (389)
407 COG4626 Phage terminase-like p 86.2 5.3 0.00011 49.2 11.5 73 495-575 61-143 (546)
408 PRK09183 transposase/IS protei 86.1 2.1 4.5E-05 48.7 7.7 25 508-532 99-123 (259)
409 PRK06321 replicative DNA helic 86.0 3.9 8.4E-05 50.6 10.6 144 508-669 223-388 (472)
410 COG1074 RecB ATP-dependent exo 86.0 1 2.2E-05 61.7 6.1 64 507-576 12-75 (1139)
411 COG1198 PriA Primosomal protei 85.9 2 4.3E-05 55.2 8.2 102 733-873 245-349 (730)
412 TIGR00959 ffh signal recogniti 85.9 4.8 0.0001 49.0 11.1 51 512-572 100-152 (428)
413 COG1435 Tdk Thymidine kinase [ 85.9 2.7 5.8E-05 45.0 7.8 90 514-637 7-96 (201)
414 TIGR01420 pilT_fam pilus retra 85.8 1.4 2.9E-05 52.4 6.3 44 509-562 120-163 (343)
415 cd01131 PilT Pilus retraction 85.7 0.99 2.1E-05 49.1 4.8 24 513-537 3-26 (198)
416 PRK10867 signal recognition pa 85.7 5.4 0.00012 48.6 11.4 51 512-572 101-153 (433)
417 PHA00350 putative assembly pro 85.6 5 0.00011 48.2 10.8 26 514-539 4-30 (399)
418 PF12846 AAA_10: AAA-like doma 85.4 1.1 2.4E-05 51.5 5.3 43 511-564 1-43 (304)
419 TIGR02533 type_II_gspE general 85.4 1.1 2.5E-05 55.4 5.6 40 496-536 226-266 (486)
420 TIGR01243 CDC48 AAA family ATP 85.4 0.96 2.1E-05 59.3 5.3 46 624-669 547-597 (733)
421 TIGR03346 chaperone_ClpB ATP-d 85.1 2.8 6.1E-05 55.9 9.5 23 510-532 193-215 (852)
422 COG2804 PulE Type II secretory 85.0 1.3 2.8E-05 53.8 5.6 42 496-538 242-284 (500)
423 PF08423 Rad51: Rad51; InterP 85.0 1.5 3.3E-05 49.7 5.9 64 502-570 25-92 (256)
424 PRK13764 ATPase; Provisional 84.9 1.5 3.2E-05 55.4 6.3 33 504-537 250-282 (602)
425 cd00561 CobA_CobO_BtuR ATP:cor 84.9 3.6 7.9E-05 43.0 8.2 37 514-561 5-41 (159)
426 PTZ00454 26S protease regulato 84.9 4.1 9E-05 49.2 9.9 19 511-529 179-197 (398)
427 PRK10865 protein disaggregatio 84.9 3.6 7.7E-05 54.8 10.2 23 511-533 199-221 (857)
428 TIGR00595 priA primosomal prot 84.8 4.1 8.8E-05 51.0 10.1 75 733-844 25-99 (505)
429 PRK05580 primosome assembly pr 84.8 4.1 8.9E-05 52.9 10.5 75 733-844 190-264 (679)
430 TIGR03819 heli_sec_ATPase heli 84.8 1.3 2.8E-05 52.4 5.4 57 494-562 161-217 (340)
431 TIGR01241 FtsH_fam ATP-depende 84.6 3 6.6E-05 52.1 9.0 19 511-529 88-106 (495)
432 PF12775 AAA_7: P-loop contain 84.5 1 2.2E-05 51.5 4.3 30 501-530 23-52 (272)
433 PF01637 Arch_ATPase: Archaeal 84.3 0.42 9.1E-06 52.6 1.1 17 511-527 20-36 (234)
434 PRK09165 replicative DNA helic 84.2 3.6 7.9E-05 51.3 9.3 154 508-669 214-392 (497)
435 smart00847 HA2 Helicase associ 84.2 0.6 1.3E-05 43.8 1.9 57 975-1036 2-58 (92)
436 PRK07773 replicative DNA helic 84.0 3.7 8E-05 55.0 9.9 144 508-669 214-376 (886)
437 TIGR02788 VirB11 P-type DNA tr 83.8 1.2 2.7E-05 51.9 4.7 28 501-528 134-161 (308)
438 TIGR00416 sms DNA repair prote 83.6 6.1 0.00013 48.7 10.8 55 504-570 83-141 (454)
439 PLN03187 meiotic recombination 83.6 3.7 8.1E-05 48.4 8.5 45 511-560 126-170 (344)
440 TIGR01243 CDC48 AAA family ATP 83.5 5.7 0.00012 52.2 11.2 20 510-529 211-230 (733)
441 TIGR00643 recG ATP-dependent D 83.5 4 8.7E-05 52.6 9.6 80 732-844 283-363 (630)
442 cd01123 Rad51_DMC1_radA Rad51_ 83.4 1.9 4E-05 48.0 5.8 44 510-558 18-61 (235)
443 CHL00195 ycf46 Ycf46; Provisio 83.2 3.7 8.1E-05 50.8 8.7 18 511-528 259-276 (489)
444 PF03237 Terminase_6: Terminas 83.0 18 0.00039 42.7 14.5 103 515-637 1-111 (384)
445 cd01125 repA Hexameric Replica 82.8 23 0.00049 39.6 14.2 44 513-557 3-48 (239)
446 COG0210 UvrD Superfamily I DNA 82.7 2.4 5.1E-05 55.1 7.1 93 495-615 2-95 (655)
447 PRK09519 recA DNA recombinatio 82.5 2.7 5.9E-05 54.4 7.4 45 511-566 60-104 (790)
448 PRK08699 DNA polymerase III su 82.5 7.2 0.00016 45.9 10.3 36 497-532 3-42 (325)
449 PHA02542 41 41 helicase; Provi 82.4 3.4 7.3E-05 51.1 7.9 28 509-536 188-215 (473)
450 PRK13695 putative NTPase; Prov 82.3 29 0.00064 36.6 14.2 24 513-537 2-25 (174)
451 KOG0736 Peroxisome assembly fa 82.2 3.2 6.9E-05 52.4 7.4 46 624-669 765-818 (953)
452 TIGR02784 addA_alphas double-s 82.1 2.4 5.2E-05 58.6 7.2 61 508-576 7-67 (1141)
453 TIGR00708 cobA cob(I)alamin ad 81.9 4.3 9.4E-05 43.0 7.4 38 513-561 7-44 (173)
454 TIGR00580 mfd transcription-re 81.7 5.3 0.00012 53.3 9.9 79 733-844 500-579 (926)
455 TIGR02238 recomb_DMC1 meiotic 81.6 3.2 6.8E-05 48.5 6.9 45 511-560 96-140 (313)
456 PRK07399 DNA polymerase III su 81.3 13 0.00027 43.7 11.7 51 610-668 111-161 (314)
457 COG0468 RecA RecA/RadA recombi 81.2 2.1 4.6E-05 48.8 5.2 85 512-634 61-152 (279)
458 COG3598 RepA RecA-family ATPas 81.2 9.3 0.0002 43.9 9.9 80 497-579 75-155 (402)
459 PF02534 T4SS-DNA_transf: Type 81.2 1.5 3.3E-05 54.3 4.5 49 512-573 45-93 (469)
460 PF01443 Viral_helicase1: Vira 81.1 0.97 2.1E-05 50.1 2.4 21 824-844 184-204 (234)
461 PRK09087 hypothetical protein; 80.9 4.8 0.0001 44.7 7.8 17 513-529 46-62 (226)
462 PLN00020 ribulose bisphosphate 80.9 1.2 2.6E-05 52.3 3.0 20 512-531 149-168 (413)
463 PRK08533 flagellar accessory p 80.8 2.6 5.6E-05 47.0 5.6 50 509-570 22-71 (230)
464 TIGR00767 rho transcription te 80.8 2.5 5.5E-05 50.4 5.8 27 510-537 167-193 (415)
465 cd01126 TraG_VirD4 The TraG/Tr 80.7 1 2.2E-05 54.3 2.6 56 513-585 1-56 (384)
466 COG2805 PilT Tfp pilus assembl 80.6 2.9 6.3E-05 47.5 5.7 30 510-540 124-153 (353)
467 PF04665 Pox_A32: Poxvirus A32 80.2 2.4 5.3E-05 47.3 5.1 30 506-536 8-37 (241)
468 PF00154 RecA: recA bacterial 80.2 3.5 7.6E-05 48.1 6.6 49 511-570 53-101 (322)
469 PRK13897 type IV secretion sys 80.1 1.8 3.8E-05 55.0 4.4 59 510-585 157-215 (606)
470 TIGR03744 traC_PFL_4706 conjug 79.7 3.5 7.5E-05 55.3 7.3 42 510-561 474-515 (893)
471 PRK08058 DNA polymerase III su 79.7 6.8 0.00015 46.2 9.0 43 619-668 106-148 (329)
472 COG2909 MalT ATP-dependent tra 79.6 1.8 4E-05 55.2 4.3 42 625-672 131-172 (894)
473 KOG0733 Nuclear AAA ATPase (VC 79.6 5.8 0.00013 49.0 8.2 50 475-528 188-240 (802)
474 TIGR02237 recomb_radB DNA repa 79.5 2.5 5.3E-05 46.2 4.9 38 511-559 12-49 (209)
475 PF13207 AAA_17: AAA domain; P 79.5 1.4 3.1E-05 43.3 2.7 18 514-531 2-19 (121)
476 KOG2373 Predicted mitochondria 79.4 2.3 5E-05 48.7 4.5 52 511-570 273-324 (514)
477 PF13481 AAA_25: AAA domain; P 79.4 3.8 8.3E-05 43.9 6.3 63 510-574 31-93 (193)
478 PF01078 Mg_chelatase: Magnesi 79.3 1.9 4E-05 46.9 3.7 30 500-529 11-40 (206)
479 PRK10733 hflB ATP-dependent me 79.2 3.2 7E-05 53.5 6.5 46 624-669 245-297 (644)
480 PF14520 HHH_5: Helix-hairpin- 78.8 1.9 4.1E-05 37.1 3.0 39 1143-1181 6-45 (60)
481 PF13555 AAA_29: P-loop contai 78.6 1.6 3.5E-05 37.9 2.4 17 512-528 24-40 (62)
482 PF13238 AAA_18: AAA domain; P 78.6 1.2 2.7E-05 43.9 2.0 18 514-531 1-18 (129)
483 cd01394 radB RadB. The archaea 78.5 3.8 8.2E-05 45.1 6.0 42 504-556 8-53 (218)
484 TIGR00763 lon ATP-dependent pr 78.5 5.6 0.00012 52.6 8.5 18 512-529 348-365 (775)
485 TIGR02640 gas_vesic_GvpN gas v 78.2 3 6.5E-05 47.5 5.2 24 508-531 18-41 (262)
486 COG0606 Predicted ATPase with 78.2 1.8 4E-05 52.1 3.5 28 501-528 188-215 (490)
487 PLN03186 DNA repair protein RA 78.0 4.3 9.3E-05 48.0 6.5 46 511-561 123-168 (342)
488 PF01580 FtsK_SpoIIIE: FtsK/Sp 78.0 3.1 6.6E-05 45.4 5.0 28 511-538 38-65 (205)
489 TIGR03345 VI_ClpV1 type VI sec 77.8 9.5 0.00021 50.8 10.3 113 509-667 206-323 (852)
490 PF02456 Adeno_IVa2: Adenoviru 77.8 2.7 5.8E-05 47.8 4.4 41 514-563 90-130 (369)
491 KOG0730 AAA+-type ATPase [Post 77.4 4.1 8.8E-05 50.8 6.2 45 625-669 529-577 (693)
492 COG0552 FtsY Signal recognitio 77.2 35 0.00076 39.8 13.2 126 513-672 141-271 (340)
493 COG1110 Reverse gyrase [DNA re 76.8 5.6 0.00012 51.8 7.4 67 733-830 125-191 (1187)
494 PHA02244 ATPase-like protein 76.8 3.1 6.6E-05 49.3 4.8 28 503-530 111-138 (383)
495 KOG0737 AAA+-type ATPase [Post 76.8 1.6 3.4E-05 50.9 2.3 53 625-678 188-246 (386)
496 cd00544 CobU Adenosylcobinamid 76.6 2.8 6E-05 44.4 4.0 45 514-572 2-46 (169)
497 PF13671 AAA_33: AAA domain; P 76.5 1.5 3.3E-05 44.4 2.0 16 514-529 2-17 (143)
498 PRK13850 type IV secretion sys 76.5 2.5 5.4E-05 54.2 4.3 60 509-585 137-196 (670)
499 TIGR01650 PD_CobS cobaltochela 76.2 4 8.6E-05 47.6 5.4 37 495-531 48-84 (327)
500 TIGR02655 circ_KaiC circadian 75.8 3.6 7.8E-05 51.2 5.4 50 511-571 21-70 (484)
No 1
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=8.6e-211 Score=1875.19 Aligned_cols=1104 Identities=64% Similarity=1.019 Sum_probs=1003.1
Q ss_pred HHHhhHhhhcccccccccCCCcCCCCCCCCCCCcceeecCCCCCccchhcccccCCCcchhhhhccCCCCccccccCCCC
Q 000756 166 LVSIGKLITDYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEEDEEEEEDVAEPNASGAMQMGGGI 245 (1300)
Q Consensus 166 L~~l~k~ItDy~~~~~~~~~~~~~~~~~~d~~~gV~v~fd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (1300)
+|+|+|+||||...++. ++..+..+++..||+|.|++.|++++.+..+.++++.++|++...++.....++-....
T Consensus 1 lV~l~k~itdy~~~~~s----k~~~d~~~~~~e~v~v~~~e~dde~~~~l~~~vkse~~ed~~~~~ee~~k~~kq~~~~~ 76 (1674)
T KOG0951|consen 1 LVKLGKLITDYELEQDS----KKVMDIGIDAAEGVEVEVEEIDDESLQDLFDMVKSELDEDDKNVKEEVAKFVKQVPAII 76 (1674)
T ss_pred CccccccceeeeecCCc----hhhhhccccccccCccccccCcchhhhHHHHHhhhhhccchhhhhhhhhhhheeccccc
Confidence 58999999999665442 12234556777899999998777766443445543332221111000011111111111
Q ss_pred CCCCCCCCcCcCCCCCcccCchHHHHHHHHhHhccCCChHHHHHHHHHHHHHHcc-CChhHHHHHHHhccCCCChhHHHH
Q 000756 246 DDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKILAE-GDDREVENKLLYHLQFDKFSLIKF 324 (1300)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~l~~~~~~~~~~~i~~ 324 (1300)
+. +....+ ....+++||++||||+|+++|. ++..+|+....+..+|+. .+++++|+.|+.+++|++|.||+.
T Consensus 77 k~-el~~d~---q~t~~~dIda~~LQR~irk~ye---la~~~Qe~~~k~~~ilr~~~~~~~lE~~L~~ll~~e~~slV~~ 149 (1674)
T KOG0951|consen 77 KT-ELLIDA---QKTRESDIDAPWLQRKIRKVYE---LASRLQEKERKAAEILRTASDDGDLEPKLVVLLQFEKISLVEF 149 (1674)
T ss_pred cc-hhhhhh---hhcchhhhhHHHHHHHHHHHHh---cchhhHHHHHHHHHhHhhccCchhhhHHHHHhhhhhhhHHHHH
Confidence 11 111000 1145899999999999999999 565566666666666666 589999999999999999999999
Q ss_pred HHhchhhhHhHHhhhhcccHHHHHHHHHHHhcCCCCHHHHHHHHHHhHHHHHHHHhhhhHhHHHHHHhhhccccCCCCCC
Q 000756 325 LLRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGRD 404 (1300)
Q Consensus 325 l~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1300)
|++||+.|+|||+|++|..++|+..|++.|+..|..+..++.++..+......+.-+..+....+... .+
T Consensus 150 l~kNr~~i~~~t~L~~aaresE~~siEe~m~~lgp~l~d~V~~~~a~~~~~~~qeek~~~l~~~e~~~-~~--------- 219 (1674)
T KOG0951|consen 150 LRKNRLGIVWCTRLARAARESERLSIEEIMRFLGPELNDIVAKYIATRQTKSEQEEKEKKLEKREELL-VS--------- 219 (1674)
T ss_pred HHhhcchhhHHHHhhhhhccchhccHHHHHhhcChhhHHHHHHHHhhhcccccchhhhhhhhccchhh-hh---------
Confidence 99999999999999999888999999999999863367788888765433211100000111111111 00
Q ss_pred ccCCCCCCCCCCCCCccccccccccccccCCcccccccccCCCCcccccCCCceEEeCCCCCCCCCCCCCccccCCCCCh
Q 000756 405 RRGLVDRDADGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPE 484 (1300)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~eei~vP~~~~~~~~~~~~l~~i~~Lp~ 484 (1300)
. ....++...++...++++|++.+.|++|+++|++++|.+|+||+|..+++|+++|||++++.|+..++.++.++++|.
T Consensus 220 ~-~~ls~td~~~v~~~~~~iDLekt~ftEGe~lm~e~~c~lP~GS~rl~kk~yeevhVPa~~~~pf~~~Ekl~~iselP~ 298 (1674)
T KOG0951|consen 220 V-IALSKTDVLGVLEMRPVIDLEKTCFTEGEELMQEGKCKLPQGSFRLKKKGYEEVHVPAPSYFPFHKEEKLVKISELPK 298 (1674)
T ss_pred h-hhhcccccccccccCcccchhhhhhhhhhhhhccCceecCCccEEEecCCceEEeCCCCCCCCCCccceeEeecCCcc
Confidence 0 011111222356778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhcCCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHH
Q 000756 485 WAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564 (1300)
Q Consensus 485 ~~~~~f~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~ 564 (1300)
|.+.+|.|..+||++|++++++++.+.+|+++|||||+|||++|++.|++.+..+.+..|..+...++|+|++|+++||+
T Consensus 299 Wnq~aF~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvq 378 (1674)
T KOG0951|consen 299 WNQPAFFGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQ 378 (1674)
T ss_pred hhhhhcccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998888888999999999999999999
Q ss_pred HHHHHHhhhcccCCcEEEEEeCCCccchhhhccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccCChhHHH
Q 000756 565 EVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLE 644 (1300)
Q Consensus 565 q~~~~~~~~l~~~gi~V~~ltGd~~~~~~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le 644 (1300)
+++..|++++..+|++|.++|||.+.+.+++.+++||||||||||+++|+..++.+.+.|+++||||+|++||+|||++|
T Consensus 379 E~VgsfSkRla~~GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLE 458 (1674)
T KOG0951|consen 379 EMVGSFSKRLAPLGITVLELTGDSQLGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLE 458 (1674)
T ss_pred HHHHHHHhhccccCcEEEEecccccchhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCcccccceeeEeeeecCchhHHHHHHHHHHH
Q 000756 645 SIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCY 724 (1300)
Q Consensus 645 ~iv~rl~~~~~~~~~~~riV~LSATlpn~~dva~~L~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1300)
+|++|+.+..+.....+|+||||||||||+||+.||++++ .++|+|+++||||||.|+|+|+++++..+++++||+.||
T Consensus 459 SIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~-~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~y 537 (1674)
T KOG0951|consen 459 SIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDP-EGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACY 537 (1674)
T ss_pred HHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccCc-ccccccCcccCcCCccceEeccccCCchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCC
Q 000756 725 EKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGM 804 (1300)
Q Consensus 725 ~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl 804 (1300)
++++++++++|||||||||++|.++|+.|++.+.+.+.+..|+++++.+++++..+++..++..|+++|++|+|+|||||
T Consensus 538 eKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl 617 (1674)
T KOG0951|consen 538 EKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGL 617 (1674)
T ss_pred HHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCCCCCCceEEEE
Q 000756 805 TRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGII 884 (1300)
Q Consensus 805 ~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d~~G~~ii 884 (1300)
++.+|..++++|++|+++|||||+|+|||||+|+++|||+||++|||++|+|.++|+.+.+||+|||||||||+.|+++|
T Consensus 618 ~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegii 697 (1674)
T KOG0951|consen 618 NRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGII 697 (1674)
T ss_pred CcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCcHHHHHHhhcCCCCcccchhHhHHHHHHHHHHhccccCHHHHHHHHHhhHHHHHHhcCCcccCCCccccccchhh
Q 000756 885 ITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITL 964 (1300)
Q Consensus 885 l~~~~~~~~y~~ll~~~lPiES~l~~~l~d~lnaEI~~g~i~~~~d~~~wL~~T~ly~r~~~nP~~y~~~~~~~~~~~~l 964 (1300)
++.+++.+||++++++|+||||++.++|.|.|||||++| +++..|+++||+|||||+||.+||.+||++++ .+|..+
T Consensus 698 it~~se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~G-v~~~~d~~~wl~yTylyvRm~~~p~ly~~~~~--~~d~~l 774 (1674)
T KOG0951|consen 698 ITDHSELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLG-VRSARDAVDWLGYTYLYVRMVRNPTLYGVSPE--ASDRLL 774 (1674)
T ss_pred ccCchHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcc-hhhHHHHHhhhcceeeEEeeccCchhccCCcc--cchHHH
Confidence 999999999999999999999999999999999999999 99999999999999999999999999999998 458999
Q ss_pred hhHHHHHHHHHHHHHHHCCCccccccCCceeeccccccccccccccccHHHHHhhcCCCCChHHHHHHhcCCcccccCcC
Q 000756 965 GERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTV 1044 (1300)
Q Consensus 965 ~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~ias~~yi~~~T~~~~~~~l~~~~~~~~il~ils~s~EF~~i~v 1044 (1300)
++++.+++|+|+..|+++|+|.|++++|.+++|++|+|||+|||.+.+|..|++.|+++|++++++++|+.|.||+++.+
T Consensus 775 e~~r~~lvhsa~~ll~~~~li~yd~~s~~~~~telg~ias~yyi~~~s~~~yn~~L~~~~~~i~lfrifs~seEfk~~sv 854 (1674)
T KOG0951|consen 775 EQRRADLVHSAATLLDKAGLIKYDRKSGAIQATELGRIASSYYITHGSMATYNELLKETMSEIDLFRIFSKSEEFKYVSV 854 (1674)
T ss_pred HHHHhhhHHHHHhhHhhcCccccccccCcccchhhccccceeeeecchHHHHHhhhhhhhccchhhhhhhhccccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHhCcCCCCCcchhhHHHHHHhHHHHHHHHHHHHHHhCcHHHHH
Q 000756 1045 RQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAE 1124 (1300)
Q Consensus 1045 R~~E~~eL~~L~~~~p~pvk~~~~~~~~Kv~iLLQa~isr~~l~~~~L~~D~~~I~q~a~RLlral~eI~~~~g~~~~a~ 1124 (1300)
|++|+.+|.+|++++|||+++.+++|.+|+|+|||+|+|+++++||+|.+||+||.|+|+|++||+|||++.+||++++.
T Consensus 855 r~~ek~el~~l~~~vpIpire~l~~p~akinvllq~yiS~lk~eG~al~~dmv~i~q~agRl~Ra~fei~l~rgw~~~~~ 934 (1674)
T KOG0951|consen 855 REEEKMELAKLLERVPIPIRENLDEPSAKINVLLQSYISQLKLEGFALTSDMVYITQSAGRLFRALFEIVLKRGWAGLAQ 934 (1674)
T ss_pred cHHHHHHhhhhcccCCcCchhccccchHHHHHHHHHHHhhcccccceeeeeEEEeccchHHHHHHHHHHHhhcCcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCccccccccCCCHHHHHHHHhCCCcchhhccCChHHHhhhhcCCcchHHHHHHHhcCCceeEEEE
Q 000756 1125 KALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAH 1204 (1300)
Q Consensus 1125 ~~l~L~k~i~q~~W~~~~pL~Q~p~i~~~~i~~le~~~~~~~~l~~l~~~el~~ll~~~~~g~~i~~~~~~~P~l~v~~~ 1204 (1300)
.+|.+|||+.++||+.++|||||++++.++++++|++.++|.++++|++.|++++++.+++|+.++.++++||++.++++
T Consensus 935 ~~l~~ck~v~~r~w~~~~plrqf~~~~~ev~~~lE~k~~~~~r~~~l~~~elg~lI~~~k~G~~l~~~~~~fpk~s~~~~ 1014 (1674)
T KOG0951|consen 935 MALNLCKMVEKRMWPTQTPLRQFKGCPKEVLRRLEKKELPWGRYYDLDPAELGELIGVPKMGKPLHLFIRQFPKLSVSAH 1014 (1674)
T ss_pred HHHHhHhHhhhhcccccCchhhcCCCCHHHHHHHHhccCcchhhhccCHHHHHHHhcCcccChhHHHHHHhcccceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeecCceEEEEEEEecCCccCCCCccccccEEEEEEcCCCCeEEEEeEEEeeeccccceEEEEEEEecCCCCCceEEEE
Q 000756 1205 VQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIR 1284 (1300)
Q Consensus 1205 vqpit~~~l~v~l~i~~~~~w~~~~h~~~e~~wi~v~D~~~~~il~~~~~~l~~~~~~~~~~l~F~vp~~~p~~~~~~v~ 1284 (1300)
+|||||++++|+|+++|+|.|++++|+..++||++|||.++++|+|+++|.++++ +|.+.|++|+++| ||+|||+
T Consensus 1015 vqpitr~~~~~~l~i~~~f~wd~~vh~~~e~F~i~ved~dge~il~~e~~~~~k~----~~~v~ft~~~~~~-pP~~fi~ 1089 (1674)
T KOG0951|consen 1015 VQPITRSVYRVELTITPDFDWDDKVHGSVEPFWIIVEDTDGEKILHHEFFLLKKK----EHTVNFTVPLFEP-PPQYFIR 1089 (1674)
T ss_pred eeeeeeeEEEEEEEEeecccchhhhcccccceEEEEEccCccceeeeeeEEeccC----ceEEEEEeecCCC-CCceEEE
Confidence 9999999999999999999999999999999999999999999999999999983 8999999999999 9999999
Q ss_pred EEecCccccceEEECC
Q 000756 1285 VVSDKWLGVLVCVWLN 1300 (1300)
Q Consensus 1285 ~iSD~wlg~d~~~~i~ 1300 (1300)
++||+|+|+++++||+
T Consensus 1090 lvSd~wl~s~~~~Pvs 1105 (1674)
T KOG0951|consen 1090 LVSDRWLHSETVLPVS 1105 (1674)
T ss_pred EeeccccCCCcccccc
Confidence 9999999999999986
No 2
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=8.8e-158 Score=1408.26 Aligned_cols=851 Identities=48% Similarity=0.782 Sum_probs=797.2
Q ss_pred CCccccccccccccccCCcccccccccCCCCcccccCCCceEEeCCCCCCCCCCCCCccccCCCCChhhHhhcCCCCCCC
Q 000756 418 LGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLN 497 (1300)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~eei~vP~~~~~~~~~~~~l~~i~~Lp~~~~~~f~g~~~ln 497 (1300)
..++++++--.+.+.. +-++.+.++.+|.|+.|.+.+.|||+.+|+..++| ...+.++.|++||..+++.|.+|++||
T Consensus 35 ~~~~~vf~~~~~~~~~-~~~~~~~k~~lp~~~~r~~~~~~eE~~~P~s~~~~-~~~~k~~~isdld~~~rk~~f~f~~fN 112 (1230)
T KOG0952|consen 35 IYYPHVFESRGLGMTD-AIFIIGIKFTLPEGSEREDYKTYEEVKIPASVPMP-MDGEKLLSISDLDDVGRKGFFSFEEFN 112 (1230)
T ss_pred ccchhHHHhhhhccch-hhhhccceEeccCCccccccCcceEEecCccCCCc-cccccceeEEecchhhhhhcccHHHHH
Confidence 3456777665554433 23456669999999999999999999999998888 566788899999999998888899999
Q ss_pred HHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcccC
Q 000756 498 RVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMY 577 (1300)
Q Consensus 498 ~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~~ 577 (1300)
.+|+.|||.+|++++|+|||||||||||.+|+|+||+.+.++ ...+.+..+++|||||+||||||.|+++.|.++|.++
T Consensus 113 ~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~-~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~ 191 (1230)
T KOG0952|consen 113 RIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEH-EEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPL 191 (1230)
T ss_pred HHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhh-ccccccccCCceEEEEechHHHHHHHHHHHhhhcccc
Confidence 999999999999999999999999999999999999999984 3346677889999999999999999999999999999
Q ss_pred CcEEEEEeCCCccchhhhccceEEEECcchHHHHHhhcC-CCcccccccEEEEecccccccCChhHHHHHHHHHHHHHhh
Q 000756 578 DVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSG-DRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIET 656 (1300)
Q Consensus 578 gi~V~~ltGd~~~~~~~~~~~~IIV~TPekld~l~r~~~-~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~ 656 (1300)
|++|.++|||+++.+.++..++|||+||||||+++|++. +..+++.|+||||||+|+|+|+|||++|.||+|++++++.
T Consensus 192 gi~v~ELTGD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~ves 271 (1230)
T KOG0952|consen 192 GISVRELTGDTQLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVES 271 (1230)
T ss_pred cceEEEecCcchhhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999984 5678899999999999999999999999999999999999
Q ss_pred ccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCcccccceeeEeeeecCchhHHHHHHHHHHHHHHHHHhC-CCe
Q 000756 657 TKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAG-KHQ 735 (1300)
Q Consensus 657 ~~~~~riV~LSATlpn~~dva~~L~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~ 735 (1300)
.+..+|||||||||||++|||.||++++..|+|+|+..|||+|+.+.++|.+.++.......+.+.||+++.+... ++|
T Consensus 272 sqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~g~q 351 (1230)
T KOG0952|consen 272 SQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQEGHQ 351 (1230)
T ss_pred hhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHcCCe
Confidence 9999999999999999999999999999999999999999999999999999886667778899999999988776 889
Q ss_pred EEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHHHHHH
Q 000756 736 VLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDL 815 (1300)
Q Consensus 736 vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~ 815 (1300)
++||||+|++|.++|+.|++.+...+....|++.. .++.|+++++.|+++|||||.++||..+++.
T Consensus 352 VlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~--------------~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~ 417 (1230)
T KOG0952|consen 352 VLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSP--------------RNKQLKELFQQGMGIHHAGMLRSDRQLVEKE 417 (1230)
T ss_pred EEEEEecChHHHHHHHHHHHHHHhcCcccccCCCh--------------hhHHHHHHHHhhhhhcccccchhhHHHHHHH
Confidence 99999999999999999999988777666666532 5678999999999999999999999999999
Q ss_pred HhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCCCCCCceEEEEEeCCCcHHHHH
Q 000756 816 FGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYL 895 (1300)
Q Consensus 816 F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d~~G~~iil~~~~~~~~y~ 895 (1300)
|..|.++|||||+|+||||||||+.|||+||+.||+.+|+++++++.|++|++|||||||||+.|.++|+|+.+++++|.
T Consensus 418 F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~ 497 (1230)
T KOG0952|consen 418 FKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYE 497 (1230)
T ss_pred HhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCcccchhHhHHHHHHHHHHhccccCHHHHHHHHHhhHHHHHHhcCCcccCCCccccccchhhhhHHHHHHHHH
Q 000756 896 SLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTA 975 (1300)
Q Consensus 896 ~ll~~~lPiES~l~~~l~d~lnaEI~~g~i~~~~d~~~wL~~T~ly~r~~~nP~~y~~~~~~~~~~~~l~~~~~~li~~a 975 (1300)
++++++.||||+|..+|.|+|||||++|||+++++|++||+|||||+||.+||..||+..+.+..||.+..++.+++..+
T Consensus 498 sLl~~~~piES~~~~~L~dnLnAEi~LgTVt~VdeAVeWL~yTylYVRm~KNP~~Ygi~~~~l~~dp~l~s~~~~l~~~~ 577 (1230)
T KOG0952|consen 498 SLLTGQNPIESQLLPCLIDNLNAEISLGTVTNVDEAVEWLKYTYLYVRMRKNPMAYGISYEELEPDPRLESHRRELCLVA 577 (1230)
T ss_pred HHHcCCChhHHHHHHHHHHhhhhheeeceeecHHHHHHHhhceeEEEEeccChHHhhhhhhcccCCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred HHHHHHCCCccccccCCceeeccccccccccccccccHHHHHhhcCCCCChHHHHHHhcCCcccccCcCCchHHHHHHHH
Q 000756 976 ATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKL 1055 (1300)
Q Consensus 976 ~~~L~~~~~i~~~~~~~~~~~T~lG~ias~~yi~~~T~~~~~~~l~~~~~~~~il~ils~s~EF~~i~vR~~E~~eL~~L 1055 (1300)
+..|.+..||.+|.+++.+.+|++||+||+|||+|+||+.|++..++.+++.++|.|+|.|+||..|++|++|+++|++|
T Consensus 578 ~~~L~~~qmi~~D~~t~~~~stdlGR~aS~yYik~ETme~~nn~~k~~~se~~iL~lis~aeEfs~ik~R~eE~k~l~el 657 (1230)
T KOG0952|consen 578 AMELDKVQMIRFDERTGYLKSTDLGRVASNYYIKYETMETFNNLPKSFYSEDDILALISMAEEFSQIKVREEEKKELKEL 657 (1230)
T ss_pred HHHhhhhheEEEecccceEcccchhhhhhhhhhhhHHHHHHHhcccccCCHHHHHHHHHhhHhhhhhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhc-CC-CCCCCCCCChhHHHHHHHHHHHhCcCCCCCcchhhHHHHHHhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Q 000756 1056 LDR-VP-IPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMV 1133 (1300)
Q Consensus 1056 ~~~-~p-~pvk~~~~~~~~Kv~iLLQa~isr~~l~~~~L~~D~~~I~q~a~RLlral~eI~~~~g~~~~a~~~l~L~k~i 1133 (1300)
++. |. .|... + ..|+|+|+|+||+|..+..|+|.+|..|+.|||+||+||||++++.++|...+.+++.|||||
T Consensus 658 ~~~~~~~~~~~~--~--~gk~nil~q~~Is~~~~~~f~L~sD~~yv~qna~ri~ralf~i~~~~~~~~~~~~~l~l~k~i 733 (1230)
T KOG0952|consen 658 NEDSCEKYPFGG--E--KGKVNILLQAYISRTEVKDFSLMSDSLYVAQNAGRISRALFQIVLRQNWHLLSNRMLNLCKRI 733 (1230)
T ss_pred Hhcccccccccc--c--chhHHHHHHhhhhccceeeeeeccCcccccccHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 975 32 22222 2 789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccCCccccccccCCCHHHHHHHHhCCCcchhhccCChHHHhhhhcCCcchHHHHHHHhcCCceeEEEEEeeecCceE
Q 000756 1134 TKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVL 1213 (1300)
Q Consensus 1134 ~q~~W~~~~pL~Q~p~i~~~~i~~le~~~~~~~~l~~l~~~el~~ll~~~~~g~~i~~~~~~~P~l~v~~~vqpit~~~l 1213 (1300)
+++||...+|++||+.... ++ ++++. .+.+|...+++++..+.++| .+.++.+|.+.+++.++|++++++
T Consensus 734 er~mw~~~~~l~qf~~~~~---~~-~~~~~---~l~~L~~~~~g~~w~~~~~~---~k~l~~ip~v~v~a~~~p~t~~vl 803 (1230)
T KOG0952|consen 734 ERRMWDFFIPLKQFTLLLN---RK-ERKKL---TLLLLRKDELGELWHNVPYG---LKQLSGIPLVNVEALIQPITRNVL 803 (1230)
T ss_pred HHHHHhhhhhhhcCCcccc---hh-hhhcc---hHHhhhhhhhccccccCchh---hhhhccCCceehhhhhccchhhhh
Confidence 9999999999999998766 44 55543 78899999999999988888 889999999999999999999999
Q ss_pred EEEEEEecCCccCCCCccccccEEEEEEcCCCCeEEEEeEEEeeeccccceEEEEEEEecCCCCCceEEEEEEecCcccc
Q 000756 1214 KVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGV 1293 (1300)
Q Consensus 1214 ~v~l~i~~~~~w~~~~h~~~e~~wi~v~D~~~~~il~~~~~~l~~~~~~~~~~l~F~vp~~~p~~~~~~v~~iSD~wlg~ 1293 (1300)
+|.+.++|+|.|++.+||+.-.+ ||++|.+...++|++.+.+.++..++.+.+.|++|+++|+|++|+++++||+|+|+
T Consensus 804 ri~~~~~~~f~w~~~~hg~~g~~-i~~ed~~~~~i~h~e~~~~~~~~~~~s~~lvf~ipis~pLps~~~~~~~s~~~l~~ 882 (1230)
T KOG0952|consen 804 RIEVAITPDFEWNDGIHGKAGQP-IFKEDSSLLPILHIEVFLVNCKKVNESQLLVFTIPISDPLPSQIRHRAVSDNWLGA 882 (1230)
T ss_pred eeeeccCCceEEecccccccCce-eEeecCCCCcceeeeeehhhhhhhhhhhheeEEeecccCCccceEEeeecccccCC
Confidence 99999999999999999997666 99999999999999999999988889999999999999999999999999999999
Q ss_pred ceEEECC
Q 000756 1294 LVCVWLN 1300 (1300)
Q Consensus 1294 d~~~~i~ 1300 (1300)
+...+++
T Consensus 883 e~~~~~s 889 (1230)
T KOG0952|consen 883 ETVYPLS 889 (1230)
T ss_pred ceecccc
Confidence 9998875
No 3
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=3e-91 Score=894.01 Aligned_cols=660 Identities=25% Similarity=0.364 Sum_probs=551.5
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCc
Q 000756 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (1300)
Q Consensus 482 Lp~~~~~~f--~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~ 559 (1300)
||+++...| .||.+|+|+|.+||+..+.+++|++++||||||||++|++++++.+.. +.++|||+|+
T Consensus 8 lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~-----------~~kal~i~P~ 76 (737)
T PRK02362 8 LPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR-----------GGKALYIVPL 76 (737)
T ss_pred CCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc-----------CCcEEEEeCh
Confidence 789999888 589999999999999877778999999999999999999999999853 3479999999
Q ss_pred HHHHHHHHHHHhhhcccCCcEEEEEeCCCccchhhhccceEEEECcchHHHHHhhcCCCcccccccEEEEeccccccc-C
Q 000756 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-N 638 (1300)
Q Consensus 560 kaLa~q~~~~~~~~l~~~gi~V~~ltGd~~~~~~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d-~ 638 (1300)
|+||.|++..|++ +..+|++|+.++|+..........++|+|||||+|+.++|+.. .+++.+++|||||+|++++ .
T Consensus 77 raLa~q~~~~~~~-~~~~g~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~~--~~l~~v~lvViDE~H~l~d~~ 153 (737)
T PRK02362 77 RALASEKFEEFER-FEELGVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNGA--PWLDDITCVVVDEVHLIDSAN 153 (737)
T ss_pred HHHHHHHHHHHHH-hhcCCCEEEEEeCCcCccccccCCCCEEEECHHHHHHHHhcCh--hhhhhcCEEEEECccccCCCc
Confidence 9999999999986 5567999999999987766666778999999999999998754 4688999999999999987 7
Q ss_pred ChhHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCcccccceeeEeeeecCchhHHHHH
Q 000756 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQL 718 (1300)
Q Consensus 639 rg~~le~iv~rl~~~~~~~~~~~riV~LSATlpn~~dva~~L~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~ 718 (1300)
||+.+|.+++++.+ ..+.+|+|+||||++|+.+++.|++.. .|.+.+||+++...+..............
T Consensus 154 rg~~le~il~rl~~----~~~~~qii~lSATl~n~~~la~wl~~~------~~~~~~rpv~l~~~v~~~~~~~~~~~~~~ 223 (737)
T PRK02362 154 RGPTLEVTLAKLRR----LNPDLQVVALSATIGNADELADWLDAE------LVDSEWRPIDLREGVFYGGAIHFDDSQRE 223 (737)
T ss_pred chHHHHHHHHHHHh----cCCCCcEEEEcccCCCHHHHHHHhCCC------cccCCCCCCCCeeeEecCCeecccccccc
Confidence 99999999998854 356789999999999999999999865 36788999998765432111000000000
Q ss_pred HH----HHHHHHHHHHh-CCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhh-------hhcccc
Q 000756 719 MN----DLCYEKVVAVA-GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSH-------TDMVKS 786 (1300)
Q Consensus 719 ~~----~~~~~~i~~~~-~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~-------~~~~~~ 786 (1300)
+. ...+..+.+.. .++++||||+||+.|+.+|..|....... +. ......+... .....+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~------~~--~~~~~~~~~~~~~l~~~~~~~~~ 295 (737)
T PRK02362 224 VEVPSKDDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKT------LT--AAERAELAELAEEIREVSDTETS 295 (737)
T ss_pred CCCccchHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhc------CC--HHHHHHHHHHHHHHHhccCcccc
Confidence 00 12222233322 47899999999999999999998764211 00 0011111111 122256
Q ss_pred hhhhhhhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHH
Q 000756 787 NDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQ 866 (1300)
Q Consensus 787 ~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQ 866 (1300)
..|..++..||++|||||++.+|..|++.|++|.++|||||++++||||+|+++|||++++.||+.. ++.+++..+|+|
T Consensus 296 ~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~-g~~~~s~~~y~Q 374 (737)
T PRK02362 296 KDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGA-GMQPIPVLEYHQ 374 (737)
T ss_pred HHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCC-CceeCCHHHHHH
Confidence 7899999999999999999999999999999999999999999999999999999999999999876 578999999999
Q ss_pred hhhccCCCCCCCceEEEEEeCCC--cHHHHHHhh-cCCCCcccchh--HhHHHHHHHHHHhccccCHHHHHHHHHhhHHH
Q 000756 867 MLGRAGRPQYDSYGEGIIITGHS--ELRYYLSLM-NQQLPIESQFV--SKLADQLNAEIVLGTVQNAKEACNWIGYTYLY 941 (1300)
Q Consensus 867 r~GRAGR~g~d~~G~~iil~~~~--~~~~y~~ll-~~~lPiES~l~--~~l~d~lnaEI~~g~i~~~~d~~~wL~~T~ly 941 (1300)
|+|||||+|+|..|.+++++... ...+|.+++ ..+.|+||++. ..|.+++++||+.|++.+.+|+++||+|||+|
T Consensus 375 m~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~l~~~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf~~ 454 (737)
T PRK02362 375 MAGRAGRPGLDPYGEAVLLAKSYDELDELFERYIWADPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEATFYA 454 (737)
T ss_pred HhhcCCCCCCCCCceEEEEecCchhHHHHHHHHHhCCCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHhChHH
Confidence 99999999999999999999875 345677777 58899999995 47999999999999999999999999999999
Q ss_pred HHHhcCCcccCCCccccccchhhhhHHHHHHHHHHHHHHHCCCccccccCCceeeccccccccccccccccHHHHHhhcC
Q 000756 942 IRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLK 1021 (1300)
Q Consensus 942 ~r~~~nP~~y~~~~~~~~~~~~l~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~ias~~yi~~~T~~~~~~~l~ 1021 (1300)
++. ..+.++.++|++|+..|.++|||+.+ ++.+.+|++|+++|+|||+|.|+..|...|+
T Consensus 455 ~~~------------------~~~~~l~~~v~~~l~~L~~~~~i~~~--~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~ 514 (737)
T PRK02362 455 TQT------------------DDTGRLERVVDDVLDFLERNGMIEED--GETLEATELGHLVSRLYIDPLSAAEIIDGLE 514 (737)
T ss_pred hhc------------------cchHHHHHHHHHHHHHHHHCCCeeec--CCeEeEChHHHHHHHhcCCHHHHHHHHHHhh
Confidence 752 01346778999999999999999975 3679999999999999999999999999988
Q ss_pred CCC--ChHHHHHHhcCCcccccCcCCchHHHHHHHHH--------hcCCCCCCCC-CCC--hhHHHHHHHHHHHhCcCCC
Q 000756 1022 PTM--GDIELCRLFSLSEEFKYVTVRQDEKMELAKLL--------DRVPIPVKES-LEE--PSAKINVLLQAYISQLKLE 1088 (1300)
Q Consensus 1022 ~~~--~~~~il~ils~s~EF~~i~vR~~E~~eL~~L~--------~~~p~pvk~~-~~~--~~~Kv~iLLQa~isr~~l~ 1088 (1300)
... +..++|+++|.+.||..+++|++|...|.++. .++|.+++.. .+. ++.|+++|||+||+|.+++
T Consensus 515 ~~~~~~~~~~l~~i~~~~e~~~~~~r~~e~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~ll~~~i~~~~~~ 594 (737)
T PRK02362 515 AAKKPTDLGLLHLVCSTPDMYELYLRSGDYEWLNEYLYEHEDELLGDVPSEFEDDEFEDFLSAVKTALLLEDWIDEVDEE 594 (737)
T ss_pred hcccCchHHHHHHhhcCccccccccChhHHHHHHHHHHhcccchhccCCchhhhhhHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 764 78899999999999999999999999998875 4566655432 223 7889999999999999853
Q ss_pred ----CCcc-hhhHHHHHHhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHhcccCCccccccccCCCHHHHHHHHhCCC
Q 000756 1089 ----GLSL-TSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF 1163 (1300)
Q Consensus 1089 ----~~~L-~~D~~~I~q~a~RLlral~eI~~~~g~~~~a~~~l~L~k~i~q~~W~~~~pL~Q~p~i~~~~i~~le~~~~ 1163 (1300)
.|.+ ..|+..++++|.||++|+++||.. +|..++..+++|+|||.|++|+..+||.|+||+++..+++|.+.|+
T Consensus 595 ~i~~~~~~~~gdl~~~~~~~~~l~~a~~~i~~~-~~~~~~~~~~~l~~~l~~gv~~~~~~L~~ip~i~~~~a~~l~~~gi 673 (737)
T PRK02362 595 RITERYGVGPGDIRGKVETAEWLLHAAERLASE-LDLDLARAARELEKRVEYGVREELLDLVGLRGVGRVRARRLYNAGI 673 (737)
T ss_pred HHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHhCCCHHHHHHhCCCCCCHHHHHHHHHcCC
Confidence 3555 589999999999999999999776 5567899999999999999999999999999999999999999998
Q ss_pred -cchhhccCChHHHhhhhcCCcchHHHHHHHhcC
Q 000756 1164 -AWERYYDLSPQELGELIRFPKMGRTLHKFVHQF 1196 (1300)
Q Consensus 1164 -~~~~l~~l~~~el~~ll~~~~~g~~i~~~~~~~ 1196 (1300)
+++++..++++++..+++ .+.++.|.+.+..+
T Consensus 674 ~s~~dl~~~~~~~l~~~~g-~~~~~~i~~~~~~~ 706 (737)
T PRK02362 674 ESRADLRAADKSVVLAILG-EKIAENILEQAGRR 706 (737)
T ss_pred CCHHHHHhCCHHHHHHHHC-HHHHHHHHHHhCcc
Confidence 999999999999999965 45567777766633
No 4
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.6e-87 Score=857.70 Aligned_cols=656 Identities=27% Similarity=0.378 Sum_probs=533.9
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCc
Q 000756 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (1300)
Q Consensus 482 Lp~~~~~~f--~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~ 559 (1300)
+|+.+...+ .||..|||+|.++++..+.+++|++++||||||||++|++++++.+... +.++|||+|+
T Consensus 8 l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~----------~~~~l~l~P~ 77 (720)
T PRK00254 8 VDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE----------GGKAVYLVPL 77 (720)
T ss_pred CCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc----------CCeEEEEeCh
Confidence 678888887 6899999999999998777789999999999999999999999987642 3589999999
Q ss_pred HHHHHHHHHHHhhhcccCCcEEEEEeCCCccchhhhccceEEEECcchHHHHHhhcCCCcccccccEEEEeccccccc-C
Q 000756 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-N 638 (1300)
Q Consensus 560 kaLa~q~~~~~~~~l~~~gi~V~~ltGd~~~~~~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d-~ 638 (1300)
++||.|+++.|+. +..+|++|..++|+..........++|+|+|||+|+.+.++.. .+++++++|||||+|.+.+ .
T Consensus 78 ~aLa~q~~~~~~~-~~~~g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~--~~l~~l~lvViDE~H~l~~~~ 154 (720)
T PRK00254 78 KALAEEKYREFKD-WEKLGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGS--SWIKDVKLVVADEIHLIGSYD 154 (720)
T ss_pred HHHHHHHHHHHHH-HhhcCCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhCCc--hhhhcCCEEEEcCcCccCCcc
Confidence 9999999999986 4567999999999987666666789999999999999988653 4688999999999999987 6
Q ss_pred ChhHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCcccccceeeEe--ee---ecCchh
Q 000756 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYI--GI---QVKKPL 713 (1300)
Q Consensus 639 rg~~le~iv~rl~~~~~~~~~~~riV~LSATlpn~~dva~~L~~~~~~~~~~f~~~~rpv~l~~~~~--~~---~~~~~~ 713 (1300)
||+.++.+++++ ...+|+|+||||++|+.+++.|+++.. +...+||+++...+. +. ......
T Consensus 155 rg~~le~il~~l-------~~~~qiI~lSATl~n~~~la~wl~~~~------~~~~~rpv~l~~~~~~~~~~~~~~~~~~ 221 (720)
T PRK00254 155 RGATLEMILTHM-------LGRAQILGLSATVGNAEELAEWLNAEL------VVSDWRPVKLRKGVFYQGFLFWEDGKIE 221 (720)
T ss_pred chHHHHHHHHhc-------CcCCcEEEEEccCCCHHHHHHHhCCcc------ccCCCCCCcceeeEecCCeeeccCcchh
Confidence 999999998875 356899999999999999999998752 567889998864322 11 111111
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCc-hh-HHHHHhhhhcccchhhhh
Q 000756 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDS-VS-REILQSHTDMVKSNDLKD 791 (1300)
Q Consensus 714 ~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~-~~-~~~l~~~~~~~~~~~L~~ 791 (1300)
.....+...+++.+. .++++||||+||+.|+.+|..|...... ++.... .. .+..........+..|++
T Consensus 222 ~~~~~~~~~~~~~i~---~~~~vLVF~~sr~~~~~~a~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 292 (720)
T PRK00254 222 RFPNSWESLVYDAVK---KGKGALVFVNTRRSAEKEALELAKKIKR------FLTKPELRALKELADSLEENPTNEKLKK 292 (720)
T ss_pred cchHHHHHHHHHHHH---hCCCEEEEEcChHHHHHHHHHHHHHHHH------hcCchhHHHHHHHHHHHhcCCCcHHHHH
Confidence 112334445555443 3679999999999999999998765421 111110 00 111111122345678999
Q ss_pred hhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhcc
Q 000756 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRA 871 (1300)
Q Consensus 792 ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRA 871 (1300)
++.+||++|||||++.+|..+++.|++|.++|||||++++||||+|+++|||++++.|+ ..++.++++.+|+||+|||
T Consensus 293 ~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~--~~~~~~~~~~~~~Qm~GRA 370 (720)
T PRK00254 293 ALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYS--NFGWEDIPVLEIQQMMGRA 370 (720)
T ss_pred HHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcC--CCCceeCCHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999997 2357789999999999999
Q ss_pred CCCCCCCceEEEEEeCCCc-HHHHHHhhc-CCCCcccchh--HhHHHHHHHHHHhccccCHHHHHHHHHhhHHHHHHhcC
Q 000756 872 GRPQYDSYGEGIIITGHSE-LRYYLSLMN-QQLPIESQFV--SKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRN 947 (1300)
Q Consensus 872 GR~g~d~~G~~iil~~~~~-~~~y~~ll~-~~lPiES~l~--~~l~d~lnaEI~~g~i~~~~d~~~wL~~T~ly~r~~~n 947 (1300)
||+|+|..|.++++++..+ ..+|.+++. .+.++.|.+. +.|.++++++|+.|++.+.+|+++||+|||+|. +|
T Consensus 371 GR~~~d~~G~~ii~~~~~~~~~~~~~~~~~~pe~l~s~l~~es~l~~~ll~~i~~~~~~~~~~~~~~l~~Tf~~~---~~ 447 (720)
T PRK00254 371 GRPKYDEVGEAIIVATTEEPSKLMERYIFGKPEKLFSMLSNESAFRSQVLALITNFGVSNFKELVNFLERTFYAH---QR 447 (720)
T ss_pred CCCCcCCCceEEEEecCcchHHHHHHHHhCCchhhhccCCchHHHHHHHHHHHHhCCCCCHHHHHHHHHhCHHHH---hh
Confidence 9999999999999998766 455666632 2233344432 356789999999999999999999999999995 46
Q ss_pred CcccCCCccccccchhhhhHHHHHHHHHHHHHHHCCCccccccCCceeeccccccccccccccccHHHHHhhcCC---CC
Q 000756 948 PALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKP---TM 1024 (1300)
Q Consensus 948 P~~y~~~~~~~~~~~~l~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~ias~~yi~~~T~~~~~~~l~~---~~ 1024 (1300)
|.+|++. +++++++..|.+++||+.+. ++.+.+|++|+++|+|||+|.|+..|...++. .+
T Consensus 448 ~~~~~~~---------------~~v~~~l~~L~~~~~i~~~~-~~~~~~t~lG~~~s~~~i~~~t~~~~~~~l~~~~~~~ 511 (720)
T PRK00254 448 KDLYSLE---------------EKAKEIVYFLLENEFIDIDL-EDRFIPLPLGIRTSQLYIDPLTAKKFKDAFPKIEKNP 511 (720)
T ss_pred cChHhHH---------------HHHHHHHHHHHHCCCeEEcC-CCCEeeChHHHHHHHHhCCHHHHHHHHHHHHhhccCC
Confidence 7766532 46888999999999999864 36799999999999999999999999998876 67
Q ss_pred ChHHHHHHhcCCcccccCcCCchHHHHHHHH--------HhcCCCCCCCCCCC--hhHHHHHHHHHHHhCcCCCCCcc--
Q 000756 1025 GDIELCRLFSLSEEFKYVTVRQDEKMELAKL--------LDRVPIPVKESLEE--PSAKINVLLQAYISQLKLEGLSL-- 1092 (1300)
Q Consensus 1025 ~~~~il~ils~s~EF~~i~vR~~E~~eL~~L--------~~~~p~pvk~~~~~--~~~Kv~iLLQa~isr~~l~~~~L-- 1092 (1300)
+..++++++|.++||..+++|++|...|.++ ..++|.+....... ++.|+++|||+||+|.+++ ..+
T Consensus 512 ~~~~~l~~~~~~~e~~~~~~r~~e~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~-~~~~~ 590 (720)
T PRK00254 512 NPLGIFQLIASTPDMTPLNYSRKEMEDLLDEAYEMEDRLYFNIPYWEDYKFQKFLRAFKTAKVLLDWINEVPEG-EIVET 590 (720)
T ss_pred CHHHHHHHhhCCccccccCcchhhHHHHHHHHHhhcccccccCCcchhhHHHHHHHHHHHHHHHHHHHcCCCHH-HHHHH
Confidence 8899999999999999999999999988843 33344322222233 7889999999999999875 234
Q ss_pred ----hhhHHHHHHhHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHhcccCCccccccccCCCHHHHHHHHhCCC-cch
Q 000756 1093 ----TSDMVFITQSAGRLLRALFEIVLKRGWA-QLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF-AWE 1166 (1300)
Q Consensus 1093 ----~~D~~~I~q~a~RLlral~eI~~~~g~~-~~a~~~l~L~k~i~q~~W~~~~pL~Q~p~i~~~~i~~le~~~~-~~~ 1166 (1300)
..|+..+++++.||++|+++||...||. .....+-+|+|||.||+|...+||.|+||+++..+++|.++|+ +++
T Consensus 591 ~~~~~gd~~~~~~~~~~l~~a~~~i~~~~~~~~~~~~~l~~l~~rl~~g~~~~~~~L~~ipgig~~~~~~l~~~g~~s~~ 670 (720)
T PRK00254 591 YNIDPGDLYRILELADWLMYSLIELYKLFEPKQEVLDYLETLHLRVKHGVREELLELMRLPMIGRKRARALYNAGFRSIE 670 (720)
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHcCCCHHHhhhhcCCCCCHHHHHHHHHccCCCHH
Confidence 5899999999999999999999866653 2223444899999999999999999999999999999999998 999
Q ss_pred hhccCChHHHhhhhcCC-cchHHHHHHHh
Q 000756 1167 RYYDLSPQELGELIRFP-KMGRTLHKFVH 1194 (1300)
Q Consensus 1167 ~l~~l~~~el~~ll~~~-~~g~~i~~~~~ 1194 (1300)
++..++++++..+.+.. +.++.|++.++
T Consensus 671 ~i~~a~~~el~~~~gi~~~~a~~i~~~~~ 699 (720)
T PRK00254 671 DIVNAKPSELLKVEGIGAKIVEGIFKHLG 699 (720)
T ss_pred HHHhCCHHHHhcCCCCCHHHHHHHHHHhc
Confidence 99999999998885543 56678888877
No 5
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=5.9e-89 Score=851.59 Aligned_cols=738 Identities=35% Similarity=0.468 Sum_probs=611.8
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCc
Q 000756 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (1300)
Q Consensus 482 Lp~~~~~~f--~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~ 559 (1300)
+++.+...+ .++.++++.|+.++...+.+++|+|||||||||||++|+++|++.+.++ ++++|||||+
T Consensus 16 ~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~----------~~k~vYivPl 85 (766)
T COG1204 16 LDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG----------GGKVVYIVPL 85 (766)
T ss_pred ccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc----------CCcEEEEeCh
Confidence 455555555 4565555555555555555589999999999999999999999999875 4589999999
Q ss_pred HHHHHHHHHHHhhhcccCCcEEEEEeCCCccchhhhccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccC-
Q 000756 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDN- 638 (1300)
Q Consensus 560 kaLa~q~~~~~~~~l~~~gi~V~~ltGd~~~~~~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~- 638 (1300)
||||.|++++|+ ++..+|++|+..|||.......+..++|||+||||||.++|+... ++..|++|||||+|+++|.
T Consensus 86 kALa~Ek~~~~~-~~~~~GirV~~~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~--~~~~V~lvViDEiH~l~d~~ 162 (766)
T COG1204 86 KALAEEKYEEFS-RLEELGIRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPS--WIEEVDLVVIDEIHLLGDRT 162 (766)
T ss_pred HHHHHHHHHHhh-hHHhcCCEEEEecCCcccchhhhccCCEEEEchHHhhHhhhcCcc--hhhcccEEEEeeeeecCCcc
Confidence 999999999999 788999999999999999998999999999999999999999974 8999999999999999997
Q ss_pred ChhHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCcccccceeeEeeeecCchhHHHHH
Q 000756 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQL 718 (1300)
Q Consensus 639 rg~~le~iv~rl~~~~~~~~~~~riV~LSATlpn~~dva~~L~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~ 718 (1300)
|||++|.+++|+++. ...+||||||||+||+.++|.||++++....+.+.+.+|+++..+.+.+...... .....
T Consensus 163 RG~~lE~iv~r~~~~----~~~~rivgLSATlpN~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k-~~~~~ 237 (766)
T COG1204 163 RGPVLESIVARMRRL----NELIRIVGLSATLPNAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKK-TWPLL 237 (766)
T ss_pred cCceehhHHHHHHhh----CcceEEEEEeeecCCHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccc-ccccc
Confidence 999999999999763 3459999999999999999999999987788999999999999999988775543 22223
Q ss_pred HHHHHHHHHHHHhC-CCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCe
Q 000756 719 MNDLCYEKVVAVAG-KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGF 797 (1300)
Q Consensus 719 ~~~~~~~~i~~~~~-~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv 797 (1300)
....++..+.+... ++|+|||||||+.|..+|+.|+....................++...+.....+..|+++++.|+
T Consensus 238 ~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~Gv 317 (766)
T COG1204 238 IDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGV 317 (766)
T ss_pred chHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCc
Confidence 34455666666655 78999999999999999999996433221111111111111122222333445689999999999
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCCCCC
Q 000756 798 AIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD 877 (1300)
Q Consensus 798 ~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d 877 (1300)
++|||||++++|..+++.|+.|.++|||||+|||||||+|+.+|||+++..|++..| ++++++.|++||+|||||||+|
T Consensus 318 afHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g-~~~i~~~dv~QM~GRAGRPg~d 396 (766)
T COG1204 318 AFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGG-IVDIPVLDVLQMAGRAGRPGYD 396 (766)
T ss_pred cccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCC-eEECchhhHhhccCcCCCCCcC
Confidence 999999999999999999999999999999999999999999999999999999544 9999999999999999999999
Q ss_pred CceEEEEEe-CCCcHHHHHHhhcCCCCcccchhHhHHHHHHHHHHhccccCHHHHHHHHHhhHHHHHHhcCCcccCCCcc
Q 000756 878 SYGEGIIIT-GHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPE 956 (1300)
Q Consensus 878 ~~G~~iil~-~~~~~~~y~~ll~~~lPiES~l~~~l~d~lnaEI~~g~i~~~~d~~~wL~~T~ly~r~~~nP~~y~~~~~ 956 (1300)
..|.+++++ +..+..++.....++.|.+ +.+.|.+..+++..++++.+..+++.|+.+||+|+|+..||.+|+...
T Consensus 397 ~~G~~~i~~~~~~~~~~~~~~~~~~~~e~--~~s~l~~~~~~~~~l~~v~~~~~~v~~~~~~~f~~~t~~~~~~~~~~~- 473 (766)
T COG1204 397 DYGEAIILATSHDELEYLAELYIQSEPEP--IESKLGDELNLRTFLLGVISVGDAVSWLELTDFYERTFYNPQTYGEGM- 473 (766)
T ss_pred CCCcEEEEecCccchhHHHHHhhccCcch--HHHhhcccccchheEEEEEeccchhhHHHHHHHHHHHHhhhhhccccc-
Confidence 999999999 5666666666666666654 666777777999999999999999999999999999999999987621
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHHCCCccccccCCceeeccccccccccccccccHHHHHhhcCCCC---ChHHHHHHh
Q 000756 957 VLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTM---GDIELCRLF 1033 (1300)
Q Consensus 957 ~~~~~~~l~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~ias~~yi~~~T~~~~~~~l~~~~---~~~~il~il 1033 (1300)
....+..++..|.+.+++ .+...+.+.+|++|+.+|+|||++.|+..|...+.... +..+++.++
T Consensus 474 -----------~~~~i~~~~~~L~~~~~~-~~~~~~~~~ate~g~~~s~~yi~~~sa~~~~~~l~~~~~~~~~~~~l~~i 541 (766)
T COG1204 474 -----------LREEILASLRYLEENGLI-LDADWEALHATELGKLVSRLYIDPESAKIFRDLLAELALEPTEIGLLYLI 541 (766)
T ss_pred -----------hHHHHHHHHHHHHhccce-eeccccccchhHHHHHhhhccCCHHHHHHHHHHHHHhccccchHHHhhhh
Confidence 234578889999998722 23345779999999999999999999999999877654 889999999
Q ss_pred cCCcccccCcCCchHHHHH--HHHHhcCCCCCCCCCCChhHHHHHHHHHHHhCcCCCCCcchhhHHHHHHhHHHHHHHHH
Q 000756 1034 SLSEEFKYVTVRQDEKMEL--AKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALF 1111 (1300)
Q Consensus 1034 s~s~EF~~i~vR~~E~~eL--~~L~~~~p~pvk~~~~~~~~Kv~iLLQa~isr~~l~~~~L~~D~~~I~q~a~RLlral~ 1111 (1300)
+.++||..+++|.++..++ ..+.+..++........+..|.+.++|++.+...+.++....|..+|.++.++...+++
T Consensus 542 s~~pd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~l~~wi~~~~~~~i~~~~~~~~~dl~ 621 (766)
T COG1204 542 SLTPDLMPIKLRERESSELVLDELEEQSDYLLGERLDELAVEYNLLLQALKTAARLLDWINEADEDEILNAYGVAPGDLL 621 (766)
T ss_pred hcCccchhhhhhhhhhhhhhHHHHHhcchHHhhccccccchhhHHHHHHHHHHHHHHHHHHhCcHHHHHHHhCcchhhHH
Confidence 9999999999999999885 55566677777777778889999999999999999889999999999999999999999
Q ss_pred HHHHHhCcHHHHHHHHHHHHHHHhcccCCccccccccCCCHHHHHHHHhCCCcchhhccCChHHHhhhhcCCcchHHHHH
Q 000756 1112 EIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHK 1191 (1300)
Q Consensus 1112 eI~~~~g~~~~a~~~l~L~k~i~q~~W~~~~pL~Q~p~i~~~~i~~le~~~~~~~~l~~l~~~el~~ll~~~~~g~~i~~ 1191 (1300)
.++....|. .+. ++.|+.++.+..|....++.|+ .....+..+++.+ +.-+++.++..-+-...++..+.....++
T Consensus 622 ~~~~~a~w~-~~~-~~~l~~~~~r~~~~~~~~~~~~-~~~~~~~~rie~g-v~~e~~~~l~~i~~~grvrar~ly~~g~~ 697 (766)
T COG1204 622 RIAETAEWL-SAD-LLALGKAAERLAKILGLGLHVL-RKLEILSLRIEYG-VRSEELLELVEIRGVGRVRARKLYNAGYK 697 (766)
T ss_pred hhcchhhhh-hhh-hhhhhhhhhhhHhhhCCCcccc-ccchhhhhhhhcC-CChhhhcccccccccchhHHHHHHHhhhc
Confidence 999999999 455 9999999999999999999999 6776666666543 32256666644333333555566666677
Q ss_pred HHhcCCceeEEEEEeeecCceEEEEEEEecCCccCCCCccccccEEEEEEcCCCCeEEEEeEEEee
Q 000756 1192 FVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLK 1257 (1300)
Q Consensus 1192 ~~~~~P~l~v~~~vqpit~~~l~v~l~i~~~~~w~~~~h~~~e~~wi~v~D~~~~~il~~~~~~l~ 1257 (1300)
.+..+|.......+.++++...++--.|.+.+.|....|+..+.||+.+.+.+...++|.+.+.+.
T Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 763 (766)
T COG1204 698 SLEDLRLIADPAELLPLTGIGERLVEAILESLGRDVLLSGRAYFFSIEVRELDLLYVLHEEALILA 763 (766)
T ss_pred cHHHHHhhcChhhhhhhhhhHHHHHHHHHHHhhhhhhcccchhhhcccCccccccceecchhhccC
Confidence 777777777777777777766666666788899999999999999999999999999998877654
No 6
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.5e-82 Score=808.73 Aligned_cols=643 Identities=23% Similarity=0.345 Sum_probs=526.6
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCc
Q 000756 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (1300)
Q Consensus 482 Lp~~~~~~f--~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~ 559 (1300)
||+.+...+ .+|. |+++|.++++.+ .+++|++++||||||||++|++++++.+.. +.++||++|+
T Consensus 8 l~~~~~~~~~~~~~~-l~~~Q~~ai~~l-~~~~nvlv~apTGSGKTl~a~lail~~l~~-----------~~k~v~i~P~ 74 (674)
T PRK01172 8 YDDEFLNLFTGNDFE-LYDHQRMAIEQL-RKGENVIVSVPTAAGKTLIAYSAIYETFLA-----------GLKSIYIVPL 74 (674)
T ss_pred CCHHHHHHHhhCCCC-CCHHHHHHHHHH-hcCCcEEEECCCCchHHHHHHHHHHHHHHh-----------CCcEEEEech
Confidence 677788777 4565 999999999986 556789999999999999999999988764 2479999999
Q ss_pred HHHHHHHHHHHhhhcccCCcEEEEEeCCCccchhhhccceEEEECcchHHHHHhhcCCCcccccccEEEEeccccccc-C
Q 000756 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-N 638 (1300)
Q Consensus 560 kaLa~q~~~~~~~~l~~~gi~V~~ltGd~~~~~~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d-~ 638 (1300)
++||.|+++.|++ +...|++|...+|+..........++|+|+|||+|+.+.+++. .+++++++||+||+|++.+ .
T Consensus 75 raLa~q~~~~~~~-l~~~g~~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~--~~l~~v~lvViDEaH~l~d~~ 151 (674)
T PRK01172 75 RSLAMEKYEELSR-LRSLGMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDP--YIINDVGLIVADEIHIIGDED 151 (674)
T ss_pred HHHHHHHHHHHHH-HhhcCCeEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCCh--hHHhhcCEEEEecchhccCCC
Confidence 9999999999987 4567899999999987666556788999999999999998765 4688999999999999987 6
Q ss_pred ChhHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCcccccceeeEeeeecCc--hhHHH
Q 000756 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKK--PLQRF 716 (1300)
Q Consensus 639 rg~~le~iv~rl~~~~~~~~~~~riV~LSATlpn~~dva~~L~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~--~~~~~ 716 (1300)
||+.++.+++++.. ..+++|+|+||||++|..++++|+++. .|...+||+|+...+....... ...+.
T Consensus 152 rg~~le~ll~~~~~----~~~~~riI~lSATl~n~~~la~wl~~~------~~~~~~r~vpl~~~i~~~~~~~~~~~~~~ 221 (674)
T PRK01172 152 RGPTLETVLSSARY----VNPDARILALSATVSNANELAQWLNAS------LIKSNFRPVPLKLGILYRKRLILDGYERS 221 (674)
T ss_pred ccHHHHHHHHHHHh----cCcCCcEEEEeCccCCHHHHHHHhCCC------ccCCCCCCCCeEEEEEecCeeeecccccc
Confidence 99999999887643 356799999999999999999999865 2667889999876543221100 00000
Q ss_pred HHHHHHHHHHHHHH-hCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcC
Q 000756 717 QLMNDLCYEKVVAV-AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPY 795 (1300)
Q Consensus 717 ~~~~~~~~~~i~~~-~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~ 795 (1300)
.. .+...+.+. ..++++||||+|++.|+.+|..|.........+ . .........+..|++++++
T Consensus 222 ~~---~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~---~---------~~~~~~~~~~~~L~~~l~~ 286 (674)
T PRK01172 222 QV---DINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDF---K---------VSSENNNVYDDSLNEMLPH 286 (674)
T ss_pred cc---cHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccc---c---------ccccccccccHHHHHHHhc
Confidence 00 012222322 237899999999999999999998764322111 0 0001123346788999999
Q ss_pred CeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCCC
Q 000756 796 GFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQ 875 (1300)
Q Consensus 796 gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g 875 (1300)
||++|||||++++|..+++.|++|.++|||||++++||||+|++.|||.+++.|+.. ...++|+.+|.||+|||||+|
T Consensus 287 gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII~~~~~~~~~--~~~~~s~~~~~Qm~GRAGR~g 364 (674)
T PRK01172 287 GVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVRDITRYGNG--GIRYLSNMEIKQMIGRAGRPG 364 (674)
T ss_pred CEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEEcCceEeCCC--CceeCCHHHHHHHhhcCCCCC
Confidence 999999999999999999999999999999999999999999999999998888754 246789999999999999999
Q ss_pred CCCceEEEEEeCCCc-HHHHHHhh-cCCCCcccchhHhHHH--HHHHHHHhccccCHHHHHHHHHhhHHHHHHhcCCccc
Q 000756 876 YDSYGEGIIITGHSE-LRYYLSLM-NQQLPIESQFVSKLAD--QLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALY 951 (1300)
Q Consensus 876 ~d~~G~~iil~~~~~-~~~y~~ll-~~~lPiES~l~~~l~d--~lnaEI~~g~i~~~~d~~~wL~~T~ly~r~~~nP~~y 951 (1300)
+|..|.+++++...+ .++|.+++ ..+.|+||++.....+ +++++|+.|.+.+.+|+++|++|||+|++ |+
T Consensus 365 ~d~~g~~~i~~~~~~~~~~~~~~l~~~~~pi~S~l~~~~~~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~---~~--- 438 (674)
T PRK01172 365 YDQYGIGYIYAASPASYDAAKKYLSGEPEPVISYMGSQRKVRFNTLAAISMGLASSMEDLILFYNETLMAIQ---NG--- 438 (674)
T ss_pred CCCcceEEEEecCcccHHHHHHHHcCCCCceeecCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhhhhHhc---Cc---
Confidence 999999999987655 67888887 7899999999865444 45599999999999999999999999973 21
Q ss_pred CCCccccccchhhhhHHHHHHHHHHHHHHHCCCccccccCCceeeccccccccccccccccHHHHHhhcCCCCChHHHHH
Q 000756 952 GLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCR 1031 (1300)
Q Consensus 952 ~~~~~~~~~~~~l~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~ias~~yi~~~T~~~~~~~l~~~~~~~~il~ 1031 (1300)
.+++.++|++|++.|.++|||+.+ +.+.+|++|+++|+|||+|.|+..|...++..++...+|.
T Consensus 439 -------------~~~l~~~v~~~l~~L~~~~~i~~~---~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~l~ 502 (674)
T PRK01172 439 -------------VDEIDYYIESSLKFLKENGFIKGD---VTLRATRLGKLTSDLYIDPESALILKSAFDHDYDEDLALY 502 (674)
T ss_pred -------------hHHHHHHHHHHHHHHHHCCCcccC---CcEeECHHHHHHHHhCCCHHHHHHHHHHhhccCCHHHHHH
Confidence 124567899999999999999743 5699999999999999999999999999999999999999
Q ss_pred HhcCCcccccCcCCchHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHhCcCCCC----Ccch-hhHHHHHHhHHHH
Q 000756 1032 LFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEG----LSLT-SDMVFITQSAGRL 1106 (1300)
Q Consensus 1032 ils~s~EF~~i~vR~~E~~eL~~L~~~~p~pvk~~~~~~~~Kv~iLLQa~isr~~l~~----~~L~-~D~~~I~q~a~RL 1106 (1300)
++|.+.|| +|+|..|...+.++.+++|.. ....++.|+++|||+||+|.+++. |... .|+..+++++.|+
T Consensus 503 ~~~~~~e~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~k~~~ll~~~~~~~~~~~i~~~~~~~~g~l~~~~~~~~~~ 577 (674)
T PRK01172 503 YISLCREI--IPANTRDDYYAMEFLEDIGVI---DGDISAAKTAMVLRGWISEASMQKITDTYGIAPGDVQARASSADWI 577 (674)
T ss_pred HhhcCccc--cccccchHHHHHHHHHHhccc---cchhHHHHHHHHHHHHHcCCCHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 99999999 899998888888888877651 234688999999999999998642 2222 5777778888888
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHhcccCCccccccccCCCHHHHHHHHhCCC-cchhhccCChHHHhhhhcCCc-
Q 000756 1107 LRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF-AWERYYDLSPQELGELIRFPK- 1184 (1300)
Q Consensus 1107 lral~eI~~~~g~~~~a~~~l~L~k~i~q~~W~~~~pL~Q~p~i~~~~i~~le~~~~-~~~~l~~l~~~el~~ll~~~~- 1184 (1300)
..|+..+|.. +|..++..+-.|.+.|.||+|+..+||.|+|||++..+++|.+.|+ ++.++.+++++++.+++++.+
T Consensus 578 ~~a~~~~~~~-~~~~~~~~l~~~~~rl~~gv~~~~~~L~~ip~~~~~~a~~l~~~g~~~~~di~~~~~~~~~~i~~~~~~ 656 (674)
T PRK01172 578 SYSLARLSSI-YKPEMRRKLEILNIRIKEGIREDLIDLVLIPKVGRVRARRLYDAGFKTVDDIARSSPERIKKIYGFSDT 656 (674)
T ss_pred HHHHHHHHHH-hhHHHHHHHHHHHHHHHcCCCHHHHhhcCCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHHhccCHH
Confidence 8888888764 4555566666677779999999999999999999999999999999 999999999999999987653
Q ss_pred chHHHHHHHhc
Q 000756 1185 MGRTLHKFVHQ 1195 (1300)
Q Consensus 1185 ~g~~i~~~~~~ 1195 (1300)
..+.|.+.++.
T Consensus 657 ~~~~i~~~~~~ 667 (674)
T PRK01172 657 LANAIVNRAMK 667 (674)
T ss_pred HHHHHHHHHHH
Confidence 44555554443
No 7
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=2.2e-67 Score=635.49 Aligned_cols=516 Identities=28% Similarity=0.516 Sum_probs=451.7
Q ss_pred eEEeCCCCCCCCCCC-CCccccCCCCC-hhhHhhcCCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHH
Q 000756 458 EEIHVPAMKHKPLDP-NEKLIKISEMP-EWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQ 535 (1300)
Q Consensus 458 eei~vP~~~~~~~~~-~~~l~~i~~Lp-~~~~~~f~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~ 535 (1300)
..+..|...++|.+. +-...|++.|. +.+...|. .+||+|+++|+.++++++|++|+||+|||||.||.+++++
T Consensus 1107 r~l~lpek~p~pt~lld~~~~~~~~l~N~~~~~lf~---~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~- 1182 (1674)
T KOG0951|consen 1107 RHLILPEKYPPPTELLDLQPLPVSALRNPSFETLFQ---DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR- 1182 (1674)
T ss_pred hhccCcccCCCCchhhhccccchhccCCcchhhhcc---ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC-
Confidence 334444444443221 22233555553 44445554 3499999999999999999999999999999999999987
Q ss_pred HHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhccc-CCcEEEEEeCCCccchhhhccceEEEECcchHHHHHhh
Q 000756 536 LALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQM-YDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRK 614 (1300)
Q Consensus 536 l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~-~gi~V~~ltGd~~~~~~~~~~~~IIV~TPekld~l~r~ 614 (1300)
+. ...+++||+|+-+.+..+++.|.++|+. .|..+..++|+.+++.......+|+|+||++||.+.
T Consensus 1183 ----~~-------~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~s~~lkl~~~~~vii~tpe~~d~lq-- 1249 (1674)
T KOG0951|consen 1183 ----PD-------TIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGETSLDLKLLQKGQVIISTPEQWDLLQ-- 1249 (1674)
T ss_pred ----Cc-------cceEEEEecchHHHHHHHHHHHHHhhccccCceEEecCCccccchHHhhhcceEEechhHHHHHh--
Confidence 11 2458999999999999999999999975 489999999999999999999999999999999882
Q ss_pred cCCCcccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCC
Q 000756 615 SGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNS 694 (1300)
Q Consensus 615 ~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LSATlpn~~dva~~L~~~~~~~~~~f~~~ 694 (1300)
..+.+++.|.||.|++++..|+++|.+++ ++++..+..+++|+|+||..+.|+.|+ ++.. ..++|+|.++
T Consensus 1250 -----~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia~q~~k~ir~v~ls~~lana~d~---ig~s-~~~v~Nf~p~ 1319 (1674)
T KOG0951|consen 1250 -----SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIASQLEKKIRVVALSSSLANARDL---IGAS-SSGVFNFSPS 1319 (1674)
T ss_pred -----hhhhcceEeeehhhhhcccCCceEEEEee-HHHHHHHHHhheeEEEeehhhccchhh---cccc-ccceeecCcc
Confidence 57889999999999999889999999999 888888899999999999999999888 7766 4789999999
Q ss_pred cccccceeeEeeeecCchhHHHHHHHHHHHHHHHHHhC-CCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchh
Q 000756 695 YRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAG-KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVS 773 (1300)
Q Consensus 695 ~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~ 773 (1300)
.||+|+..++.++...+...++.+|.+..|..+..+.+ +++.+||+++|+.|..+|..+...+....
T Consensus 1320 ~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~------------ 1387 (1674)
T KOG0951|consen 1320 VRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADE------------ 1387 (1674)
T ss_pred cCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccchhhccCc------------
Confidence 99999999999999999999999999999999988877 78999999999999999998876654331
Q ss_pred HHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCC
Q 000756 774 REILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEK 853 (1300)
Q Consensus 774 ~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~ 853 (1300)
...+-.+.+. .+..|++-+++||+ |.||+..+...|-.+|..|.|+|+|...- +||.-..++.||++||++||+..
T Consensus 1388 ~~~l~~~~e~-~~~~l~e~l~~gvg--~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~~lVvvmgt~~ydg~e 1463 (1674)
T KOG0951|consen 1388 PDYLLSELEE-CDETLRESLKHGVG--HEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKAHLVVVMGTQYYDGKE 1463 (1674)
T ss_pred HHHHHHHHhc-chHhhhhccccccc--ccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccceEEEEecceeecccc
Confidence 1222222222 56789999999999 99999999999999999999999999988 99999999999999999999999
Q ss_pred CCcccCCHHHHHHhhhccCCCCCCCceEEEEEeCCCcHHHHHHhhcCCCCcccchhHhHHHHHHHHHHhccccCHHHHHH
Q 000756 854 GAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACN 933 (1300)
Q Consensus 854 g~~~~~S~~d~lQr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~lPiES~l~~~l~d~lnaEI~~g~i~~~~d~~~ 933 (1300)
+.|.+|++.+++||+|+|.| .|.|+++|...+..||++|+.+++|+||++...|+|++|+||+.++|.|.+||++
T Consensus 1464 ~~~~~y~i~~ll~m~G~a~~-----~~k~vi~~~~~~k~yykkfl~e~lPves~lq~~lhd~~n~ei~~~tienkqd~vd 1538 (1674)
T KOG0951|consen 1464 HSYEDYPIAELLQMVGLASG-----AGKCVIMCHTPKKEYYKKFLYEPLPVESHLQHCLHDNFNAEIVTKTIENKQDAVD 1538 (1674)
T ss_pred cccccCchhHHHHHhhhhcC-----CccEEEEecCchHHHHHHhccCcCchHHHHHHHHHhhhhHHHHHHHHHhHHHHHH
Confidence 99999999999999999998 5799999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhHHHHHHhcCCcccCCCccccccchhhhhHHHHHHHHHHHHHHHCCCccccccCCceeeccccccccccccccccH
Q 000756 934 WIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTI 1013 (1300)
Q Consensus 934 wL~~T~ly~r~~~nP~~y~~~~~~~~~~~~l~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~ias~~yi~~~T~ 1013 (1300)
||+|||+|+|+..||+||++.. .+..+++.++++++++++..|..+.||+.+..+. -+|.|+|+|||++-|+
T Consensus 1539 ~lt~s~~yrr~~~np~yy~l~~---v~~~~~S~~lS~lvet~l~dl~~s~~i~v~dad~-----~l~~Ias~y~i~y~ti 1610 (1674)
T KOG0951|consen 1539 YLTWSFMYRRLPQNPNYYNLQG---VSHRHLSDFLSELVETTLNDLEESKCIEVDDEDD-----SLGMIASYYYISYITI 1610 (1674)
T ss_pred HHHHHHhhhccccCcceecccc---cchhhhhhHHHHHHHHHHHHhhcCceEEeecccc-----ccchhhhhceeeeEee
Confidence 9999999999999999999987 4678899999999999999999999999876543 2999999999999999
Q ss_pred HHHHhhcCCCCChHHH
Q 000756 1014 STYNEHLKPTMGDIEL 1029 (1300)
Q Consensus 1014 ~~~~~~l~~~~~~~~i 1029 (1300)
..|...++.......+
T Consensus 1611 ~~f~~~L~~~t~~kgl 1626 (1674)
T KOG0951|consen 1611 ERFSSSLSEKTKMKGL 1626 (1674)
T ss_pred ehhhhhhhhhhhhhhh
Confidence 9998877665544333
No 8
>smart00611 SEC63 Domain of unknown function in Sec63p, Brr2p and other proteins.
Probab=100.00 E-value=1.5e-56 Score=520.31 Aligned_cols=306 Identities=44% Similarity=0.736 Sum_probs=292.2
Q ss_pred eeeccccccccccccccccHHHHHhhcCCCCChHHHHHHhcCCcccccCcCCchHHHHHHHHHhcCCCCCC-CCCCChhH
Q 000756 994 FQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVK-ESLEEPSA 1072 (1300)
Q Consensus 994 ~~~T~lG~ias~~yi~~~T~~~~~~~l~~~~~~~~il~ils~s~EF~~i~vR~~E~~eL~~L~~~~p~pvk-~~~~~~~~ 1072 (1300)
+.+|++|+|||+|||++.|++.|+..+++.++..++|++||.|.||.++++|++|+.+|.+|.+.+|++++ ...+.|+.
T Consensus 2 ~~~T~~Grias~yYI~~~T~~~f~~~l~~~~~~~~lL~~ls~a~Ef~~i~vR~~E~~~l~~l~~~~~~~~~~~~~~~~~~ 81 (312)
T smart00611 2 IWPTDLGRIASYYYISYTTIRTFNELLKPKMTTKDLLRILSMSSEFDQIPVRHEEDLLLEELAEKLPIRLENPSLDDPHV 81 (312)
T ss_pred cccchhHHHHhhhccChHHHHHHHHhcCCCCCHHHHHHHHhCcHhhCCCCCCccHHHHHHHHHHhCCcCcCCCCCCCchH
Confidence 57999999999999999999999999999999999999999999999999999999999999999998876 56788999
Q ss_pred HHHHHHHHHHhCcCCCCCcchhhHHHHHHhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHhcccCCccccccccCCCH
Q 000756 1073 KINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPN 1152 (1300)
Q Consensus 1073 Kv~iLLQa~isr~~l~~~~L~~D~~~I~q~a~RLlral~eI~~~~g~~~~a~~~l~L~k~i~q~~W~~~~pL~Q~p~i~~ 1152 (1300)
|+++||||||+|+.+++++|.+|+.+|+++|+||++||+|||..+||+.++.++++|+|||+||+|++++||+||||+++
T Consensus 82 K~~lLLqa~i~r~~l~~~~l~~D~~~vl~~a~rll~al~di~~~~~~~~~~~~~l~L~q~i~q~~w~~~~~L~Qlp~i~~ 161 (312)
T smart00611 82 KANLLLQAHLSRLKLPSFALESDTVYVLQNAGRLLQAMVDIALERGWLSTALNALNLSQMIIQALWPTDSPLLQLPHLPE 161 (312)
T ss_pred HHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhCCCCCccccCCCCCH
Confidence 99999999999999998999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCC-cchhhccCChHHHhhhhcCC-cchHHHHHHHhcCCceeEEEEEeeecCceEEEEEEEecCCccCCCCc
Q 000756 1153 EILMKLEKKDF-AWERYYDLSPQELGELIRFP-KMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVH 1230 (1300)
Q Consensus 1153 ~~i~~le~~~~-~~~~l~~l~~~el~~ll~~~-~~g~~i~~~~~~~P~l~v~~~vqpit~~~l~v~l~i~~~~~w~~~~h 1230 (1300)
+.+++++++|+ +++++.++++++++.+++.+ +.+++++++++.||+++|+++++|+++.+.++.++++++|.|+..+|
T Consensus 162 ~~~~~l~~~~i~s~~~l~~~~~~~~~~ll~~~~~~~~~i~~~~~~~P~l~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 241 (312)
T smart00611 162 EILKRLEKKKVLSLEDLLELEDEERGELLGLLDAEGERVYKVLSRLPKLNIEISLEPITRTVLGVEVTLTVDLTWDDEIH 241 (312)
T ss_pred HHHHHHHhCCCCCHHHHHhcCHHHHHHHHcCCHHHHHHHHHHHHhCCcceeEEEEcCCcccccCceEEEEEEEEEccccc
Confidence 99999999886 99999999999999999887 78899999999999999999999999889999999999999999999
Q ss_pred cccccEEEEEEcCCCCeEEEEeEEEeeeccccceEEEEEEEecCCCCCceEEEEEEecCccccceEEECC
Q 000756 1231 GYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGVLVCVWLN 1300 (1300)
Q Consensus 1231 ~~~e~~wi~v~D~~~~~il~~~~~~l~~~~~~~~~~l~F~vp~~~p~~~~~~v~~iSD~wlg~d~~~~i~ 1300 (1300)
++.+.||+||+|+++++|+|+++|++++....+++.++|.+|.. +|.++|+|+++||+|+|||++++++
T Consensus 242 ~k~e~~~l~v~d~~~~~il~~~~~~~~~~~~~~~~~l~f~~P~~-~~~~~~~v~v~SD~y~g~d~~~~i~ 310 (312)
T smart00611 242 GKQEGWWLVIGDSDGNELLHIERFSLNKKNVSEEVKLDFTAPAT-EGNYQYTLRLVSDSYLGCDQEYPLS 310 (312)
T ss_pred CCcccEEEEEEeCCCCEEEEEEEEEEEeecCCCcEEEEEEecCC-CCcceEEEEEEecccCCcceEEEEe
Confidence 99999999999999999999999999887666688999999984 4559999999999999999999874
No 9
>PF02889 Sec63: Sec63 Brl domain; InterPro: IPR004179 This domain was named after the yeast Sec63 (or NPL1) (also known as the Brl domain) protein in which it was found. This protein is required for assembly of functional endoplasmic reticulum translocons [, ]. Other yeast proteins containing this domain include pre-mRNA splicing helicase BRR2, HFM1 protein and putative helicases. ; PDB: 3IM2_A 3IM1_A 3HIB_A 2Q0Z_X.
Probab=100.00 E-value=5.8e-54 Score=499.52 Aligned_cols=305 Identities=38% Similarity=0.641 Sum_probs=241.7
Q ss_pred eccccccccccccccccHHHHHhhcCCCCChHHHHHHhcCCcccccCcCCchHHHHHHHHHhcCCCCC-CCCCCChhHHH
Q 000756 996 VTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPV-KESLEEPSAKI 1074 (1300)
Q Consensus 996 ~T~lG~ias~~yi~~~T~~~~~~~l~~~~~~~~il~ils~s~EF~~i~vR~~E~~eL~~L~~~~p~pv-k~~~~~~~~Kv 1074 (1300)
||++|+|||+|||++.||..|+..+++.++..++|++||.|.||+.+++|++|+.+|.+|.+.+|+|+ ++.+++|+.|+
T Consensus 1 pT~lG~i~s~yyi~~~T~~~~~~~l~~~~~~~~il~~l~~a~EF~~i~~R~~E~~~l~~l~~~~~~~~~~~~~~~~~~K~ 80 (314)
T PF02889_consen 1 PTELGRIMSRYYISFETMENFFESLKEDMSEKDILELLSSAEEFSEIPVRHNEKKELNELNKKIPYPIKKEKINDPHIKA 80 (314)
T ss_dssp ---CGC--------HHHHHHHHHH--TT--HHHHHHHHHTSGGGCCS---TTHHHHHHHHHCCSSS--STS-TTSHHHHH
T ss_pred CCHHHHHHHHhcccHHHHHHHHHHCCCCCCHHHHHHHHcCcHhHhhCccchhhHHHHHHHHHhcccCccccccccHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999 77899999999
Q ss_pred HHHHHHHHhCcCCCCCcchhhHHHHHHhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHhcccCCccccccccCCCHHH
Q 000756 1075 NVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEI 1154 (1300)
Q Consensus 1075 ~iLLQa~isr~~l~~~~L~~D~~~I~q~a~RLlral~eI~~~~g~~~~a~~~l~L~k~i~q~~W~~~~pL~Q~p~i~~~~ 1154 (1300)
++||||||+|+++++++|.+|+.+|+++|+||++||+|||..+||+.++.++|+|+|||+||+|++.+||+||||++++.
T Consensus 81 ~~Llqa~l~r~~l~~~~l~~D~~~i~~~~~Rll~a~~ei~~~~~~~~~~~~~l~l~q~i~q~~w~~~~~L~Qlp~i~~~~ 160 (314)
T PF02889_consen 81 FVLLQAHLSRIPLPDSSLRQDLKYILDNAPRLLRAMIEIALEKGWLSTALNALELSQCIVQALWDSDSPLLQLPHIGEES 160 (314)
T ss_dssp HHHHHHHHCT-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTBCCHHHHHHHHHHHHHHTS-TTS-GGGGSTT--HHH
T ss_pred HHHHHHhccCCCcCchhHHhhHHhhhhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhcCCCCChhhcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCC-cchhhccCChHHHhhhhc-CCcchHHHHHHHhcCCceeEEEEEeeecCce---EEEEEEEecCCccCCCC
Q 000756 1155 LMKLEKKDF-AWERYYDLSPQELGELIR-FPKMGRTLHKFVHQFPKLILAAHVQPITRTV---LKVELTITPDFLWDDKV 1229 (1300)
Q Consensus 1155 i~~le~~~~-~~~~l~~l~~~el~~ll~-~~~~g~~i~~~~~~~P~l~v~~~vqpit~~~---l~v~l~i~~~~~w~~~~ 1229 (1300)
+++++++|+ ++++|.++++++++.+++ .+++++++.+++++||+++|++.++|++.+. ++|+|++++.|.|+.++
T Consensus 161 ~~~l~~~~i~~l~~l~~~~~~e~~~ll~~~~~~~~~i~~~~~~~P~~~i~~~~~~~~~~~~~~~~v~v~i~~~~~~~~~~ 240 (314)
T PF02889_consen 161 LKKLEKRGIKTLQDLRDLSPEELEELLNRNPPFGKEILEVASRIPRLEIKASVQVIDEEIVPILTVQVSITRKFSWSDRF 240 (314)
T ss_dssp HHHHHHTT--SHHHHHHS-HHHHHHHH-S-HHHHHHHHHHHCCS--EEEEEEETTCCGEECSEEEEEEEEEESSS-SST-
T ss_pred HHHHhccCCCcHHHHhhCCHHHHHHHHhhhhhhHHHHHHHHHHCCCEEEEEEEeccccccCCcEEEEEEEEcccccccCC
Confidence 999999995 999999999999999997 6789999999999999999999999998877 99999999999999999
Q ss_pred ccc-cccEEEEEEcCCCCeEEEEeEEEeeeccccceEEEEEEEecC-CCCCceEEEEEEecCccccceEEECC
Q 000756 1230 HGY-VEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIY-EPLPPQYFIRVVSDKWLGVLVCVWLN 1300 (1300)
Q Consensus 1230 h~~-~e~~wi~v~D~~~~~il~~~~~~l~~~~~~~~~~l~F~vp~~-~p~~~~~~v~~iSD~wlg~d~~~~i~ 1300 (1300)
|+. .+.||++|+|.++++|+|++++.+.++.....+.++|++|.. .+.+++|.|+++||+|+|+|++++|+
T Consensus 241 ~~~k~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~vp~~~~~~~~~~~v~v~sd~y~G~d~~~~i~ 313 (314)
T PF02889_consen 241 PKKKKESWWLFVGDSKNNELLHFERITISKKKSKDTVKISFQVPIPVGPRPYQYTVYVISDSYLGLDQEVPIN 313 (314)
T ss_dssp SS--B--EEEEEEECCCTEEEEEEEE---SS--EEEEEEEEE--SS-EE--EEEEEEEEESS-SS--EEEEEE
T ss_pred CCCCcccEEEEEEECCCCeEEEEeeeehhhhccCCcEEEEEEecCCCCCCCceEEEEEEECCccccceEEEee
Confidence 998 889999999999999999999999321135678999999984 34459999999999999999999874
No 10
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=7.2e-51 Score=461.60 Aligned_cols=556 Identities=24% Similarity=0.347 Sum_probs=407.1
Q ss_pred cCCC--CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEE
Q 000756 478 KISE--MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKI 553 (1300)
Q Consensus 478 ~i~~--Lp~~~~~~f--~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~ki 553 (1300)
++++ +|+.++..| .|++.|.|+|.-++.+.+-.++|++|.++|+||||+++.++-+..+... +.|.
T Consensus 195 ~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~----------g~Km 264 (830)
T COG1202 195 PVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSG----------GKKM 264 (830)
T ss_pred cccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhC----------CCeE
Confidence 4444 589999988 7899999999999999888889999999999999999999988777653 5689
Q ss_pred EEEcCcHHHHHHHHHHHhhhcccCCcEEEEEeCCCccchhh-------hccceEEEECcchHHHHHhhcCCCcccccccE
Q 000756 554 VYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKL 626 (1300)
Q Consensus 554 v~iaP~kaLa~q~~~~~~~~l~~~gi~V~~ltGd~~~~~~~-------~~~~~IIV~TPekld~l~r~~~~~~~l~~v~l 626 (1300)
+|++|..|||+|.++.|+++..++|++|..-.|-..+.... ...++|||+|+|-+|.++|... .+.+++.
T Consensus 265 lfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~---~lgdiGt 341 (830)
T COG1202 265 LFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGK---DLGDIGT 341 (830)
T ss_pred EEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCC---cccccce
Confidence 99999999999999999999999999998888865543322 2468999999999999999874 6789999
Q ss_pred EEEeccccccc-CChhHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCcccccceeeEe
Q 000756 627 LIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYI 705 (1300)
Q Consensus 627 iIiDEaH~l~d-~rg~~le~iv~rl~~~~~~~~~~~riV~LSATlpn~~dva~~L~~~~~~~~~~f~~~~rpv~l~~~~~ 705 (1300)
|||||+|.|.| +||+.+.-++.|+.+ ..+..|+|+||||+.|++++|..|+..+ .....||||++.|.+
T Consensus 342 VVIDEiHtL~deERG~RLdGLI~RLr~----l~~~AQ~i~LSATVgNp~elA~~l~a~l------V~y~~RPVplErHlv 411 (830)
T COG1202 342 VVIDEIHTLEDEERGPRLDGLIGRLRY----LFPGAQFIYLSATVGNPEELAKKLGAKL------VLYDERPVPLERHLV 411 (830)
T ss_pred EEeeeeeeccchhcccchhhHHHHHHH----hCCCCeEEEEEeecCChHHHHHHhCCee------EeecCCCCChhHeee
Confidence 99999999998 799999999999865 4568999999999999999999999874 223569999999887
Q ss_pred eeecCchhHHHHHHHHHHHHHHHHHh---CCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhh
Q 000756 706 GIQVKKPLQRFQLMNDLCYEKVVAVA---GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTD 782 (1300)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~ 782 (1300)
...... .+...++.++-....... -.+|+|||++||+.|..+|..|...+.
T Consensus 412 f~~~e~--eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~------------------------ 465 (830)
T COG1202 412 FARNES--EKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGL------------------------ 465 (830)
T ss_pred eecCch--HHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCc------------------------
Confidence 665322 233334444433222222 278999999999999999999987653
Q ss_pred cccchhhhhhhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHH
Q 000756 783 MVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPL 862 (1300)
Q Consensus 783 ~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~ 862 (1300)
...+|||||+..+|..++..|.++.+.++|+|++|+.|||+|+..||+..- .-+..|+|+.
T Consensus 466 -------------~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsL------aMG~~WLs~~ 526 (830)
T COG1202 466 -------------KAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESL------AMGIEWLSVR 526 (830)
T ss_pred -------------ccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHH------HcccccCCHH
Confidence 346789999999999999999999999999999999999999999886411 1124689999
Q ss_pred HHHHhhhccCCCCCCCceEEEEEeCCCcH----------HHHHHhhc-CCCCcccchhH-hHHHHHHHHHHhccccCHHH
Q 000756 863 DIMQMLGRAGRPQYDSYGEGIIITGHSEL----------RYYLSLMN-QQLPIESQFVS-KLADQLNAEIVLGTVQNAKE 930 (1300)
Q Consensus 863 d~lQr~GRAGR~g~d~~G~~iil~~~~~~----------~~y~~ll~-~~lPiES~l~~-~l~d~lnaEI~~g~i~~~~d 930 (1300)
+|.||.||||||+|+..|++|++..+... ..-.+++. .+.|+.-.... .-.+...| ..|...+..
T Consensus 527 EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~~~m~~TEdevA~kLL~s~~e~V~vey~ee~e~e~vLA--~~~v~~s~~- 603 (830)
T COG1202 527 EFQQMLGRAGRPDYHDRGKVYLLVEPGKKYHASMEETEDEVAFKLLESEPEPVIVEYDEEDEEENVLA--SAGVTNSLS- 603 (830)
T ss_pred HHHHHhcccCCCCcccCceEEEEecCChhhcccccccHHHHHHHHhcCCCCcceeccCcHHHHHHHHH--HhhhcCcHH-
Confidence 99999999999999999999999976432 22334443 45565544433 12233333 223323322
Q ss_pred HHHHHHhhHHHHHHhcCCcccCCCccccccchhhhhHHHHHHHHHHHHHHHCCCccccccCCceeecccccccccccccc
Q 000756 931 ACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISH 1010 (1300)
Q Consensus 931 ~~~wL~~T~ly~r~~~nP~~y~~~~~~~~~~~~l~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~ias~~yi~~ 1010 (1300)
.++- -|+...|...+ ...++..|++.|||+.+ ++.+.+|+.|+++|.+++.|
T Consensus 604 ~i~~-----------v~~~~~g~~~~---------------~~k~l~~Lee~g~i~~~--G~~v~~T~yGrava~~Fl~p 655 (830)
T COG1202 604 VIER-----------VNSLMLGAAFD---------------PKKALSKLEEYGMIKKK--GNIVRPTPYGRAVAMSFLGP 655 (830)
T ss_pred HHhh-----------cChhhccccCC---------------HHHHHHHHHhcCCeecc--CCEeeeccccceeEEeecCc
Confidence 1211 12223332211 25678899999999854 35699999999999999999
Q ss_pred ccHHHHHhhcCCCCChHHHHHHhcCCcccccCcCCchHHHHHHHHHh-cCCCCCCC-----------CCC--Chh--HHH
Q 000756 1011 GTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLD-RVPIPVKE-----------SLE--EPS--AKI 1074 (1300)
Q Consensus 1011 ~T~~~~~~~l~~~~~~~~il~ils~s~EF~~i~vR~~E~~eL~~L~~-~~p~pvk~-----------~~~--~~~--~Kv 1074 (1300)
.++..+...+-.++.. +++++.-.=|+...+...=+.++..... ++|..+-. .+- +|. .|.
T Consensus 656 ~~a~~Ir~~v~~~~~p---l~i~~~l~pfE~ayls~~l~r~i~~~~~~~vpsr~f~~a~~~I~~e~d~ii~ld~k~~e~l 732 (830)
T COG1202 656 SEAEFIREGVLASMDP---LRIAAELEPFENAYLSGFLKRAIESALRGRVPSRLFDSALLDILEEGDKIIELDPKLKEKL 732 (830)
T ss_pred hHHHHHHHhhhccCCh---HhHhhccccccccccChHHHHHHHHHhcCCCchhhhhHHHHHHHhchhhhhcCCHHHHHHH
Confidence 9999998886555543 4444444455544444333333333221 23321111 000 222 234
Q ss_pred HHHHHHHHh-------------------CcCCCC-------------C---cchhhHHHHHHhHHHHHHHHHHHHHHhCc
Q 000756 1075 NVLLQAYIS-------------------QLKLEG-------------L---SLTSDMVFITQSAGRLLRALFEIVLKRGW 1119 (1300)
Q Consensus 1075 ~iLLQa~is-------------------r~~l~~-------------~---~L~~D~~~I~q~a~RLlral~eI~~~~g~ 1119 (1300)
..+.|.+++ ++++++ | ++..|..+-++++.|++.|.-.||...+-
T Consensus 733 ~~i~~df~~c~c~d~ce~~~~~lse~ii~lR~~gk~p~~Isr~l~~~Ygi~aYpgDif~wLd~~vr~Lea~~rIArvf~k 812 (830)
T COG1202 733 LLIYMDFLNCTCRDCCECAEQRLSEKIIELRIEGKDPSQISRILEKRYGIQAYPGDIFTWLDTLVRLLEAIGRIARVFKK 812 (830)
T ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhCeeecChhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444444444 122222 2 34479999999999999999999988777
Q ss_pred HHHHHHHHHHHHHHHh
Q 000756 1120 AQLAEKALNLSKMVTK 1135 (1300)
Q Consensus 1120 ~~~a~~~l~L~k~i~q 1135 (1300)
-..+..+..|.+-++.
T Consensus 813 r~~~~ea~~lk~~ie~ 828 (830)
T COG1202 813 REVEAEAKALKKKIEE 828 (830)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 7777778777776654
No 11
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7e-45 Score=398.57 Aligned_cols=343 Identities=22% Similarity=0.336 Sum_probs=280.4
Q ss_pred hhhHhhc--CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHH
Q 000756 484 EWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561 (1300)
Q Consensus 484 ~~~~~~f--~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~ka 561 (1300)
+.+..+. .|++.|++||++++|.++.+.+ +|..|.||||||.+|.+||++.+.+.+ ..+.+++++|||+
T Consensus 70 ~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~d-vIglAeTGSGKT~afaLPIl~~LL~~p--------~~~~~lVLtPtRE 140 (476)
T KOG0330|consen 70 PELLEACQELGWKKPTKIQSEAIPVALGGRD-VIGLAETGSGKTGAFALPILQRLLQEP--------KLFFALVLTPTRE 140 (476)
T ss_pred HHHHHHHHHhCcCCCchhhhhhcchhhCCCc-EEEEeccCCCchhhhHHHHHHHHHcCC--------CCceEEEecCcHH
Confidence 4444444 6799999999999999998754 999999999999999999999998853 3589999999999
Q ss_pred HHHHHHHHHhhhcccCCcEEEEEeCCCccchhh---hccceEEEECcch-HHHHHhhcCCCcccccccEEEEeccccccc
Q 000756 562 LVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEK-WDIITRKSGDRTYTQLVKLLIIDEIHLLHD 637 (1300)
Q Consensus 562 La~q~~~~~~~~l~~~gi~V~~ltGd~~~~~~~---~~~~~IIV~TPek-ld~l~r~~~~~~~l~~v~liIiDEaH~l~d 637 (1300)
||.|+.+.|..+....|++|..+.|+.....+. ...++|||+||++ ||.+..... ..+..++++|+|||+.+.|
T Consensus 141 LA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkg--f~le~lk~LVlDEADrlLd 218 (476)
T KOG0330|consen 141 LAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKG--FSLEQLKFLVLDEADRLLD 218 (476)
T ss_pred HHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccC--ccHHHhHHHhhchHHhhhh
Confidence 999999999998888999999999998766543 4689999999999 688875544 4678899999999999988
Q ss_pred -CChhHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEE-ecCCcccc-cceeeEeeeecCchhH
Q 000756 638 -NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFY-FDNSYRPV-PLSQQYIGIQVKKPLQ 714 (1300)
Q Consensus 638 -~rg~~le~iv~rl~~~~~~~~~~~riV~LSATlpn~~dva~~L~~~~~~~~~~-f~~~~rpv-~l~~~~~~~~~~~~~~ 714 (1300)
++++.++.|+..+ +...|.+++|||+|. .+.+..+..+....-. ....|+.+ .+.|+|..++.+....
T Consensus 219 ~dF~~~ld~ILk~i-------p~erqt~LfsATMt~--kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~ 289 (476)
T KOG0330|consen 219 MDFEEELDYILKVI-------PRERQTFLFSATMTK--KVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDT 289 (476)
T ss_pred hhhHHHHHHHHHhc-------CccceEEEEEeecch--hhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccch
Confidence 6888887777654 578899999999984 6777777665443322 33345554 4677777776654322
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhc
Q 000756 715 RFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLP 794 (1300)
Q Consensus 715 ~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~ 794 (1300)
.+- .+.....++++||||++...+..++-.|+..+...
T Consensus 290 yLV--------~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a---------------------------------- 327 (476)
T KOG0330|consen 290 YLV--------YLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQA---------------------------------- 327 (476)
T ss_pred hHH--------HHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcce----------------------------------
Confidence 211 12233347899999999999999999998876543
Q ss_pred CCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCC
Q 000756 795 YGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRP 874 (1300)
Q Consensus 795 ~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~ 874 (1300)
..+||.|++..|.-.++.|++|...|||||++++||+|+|.+++||+ ||.|. +..||+||+||+||.
T Consensus 328 ---~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVN----yDiP~------~skDYIHRvGRtaRa 394 (476)
T KOG0330|consen 328 ---IPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVN----YDIPT------HSKDYIHRVGRTARA 394 (476)
T ss_pred ---ecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEe----cCCCC------cHHHHHHHccccccc
Confidence 34599999999999999999999999999999999999999999999 99776 788999999999999
Q ss_pred CCCCceEEEEEeCCCcHHHHHHh---hcCCCC
Q 000756 875 QYDSYGEGIIITGHSELRYYLSL---MNQQLP 903 (1300)
Q Consensus 875 g~d~~G~~iil~~~~~~~~y~~l---l~~~lP 903 (1300)
| .+|.+|.+.++.+.+.|.++ +...+|
T Consensus 395 G--rsG~~ItlVtqyDve~~qrIE~~~gkkl~ 424 (476)
T KOG0330|consen 395 G--RSGKAITLVTQYDVELVQRIEHALGKKLP 424 (476)
T ss_pred C--CCcceEEEEehhhhHHHHHHHHHHhcCCC
Confidence 9 99999999999998888764 444444
No 12
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=3.6e-44 Score=463.52 Aligned_cols=413 Identities=23% Similarity=0.323 Sum_probs=293.0
Q ss_pred CCCChhhHhhc-CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcC
Q 000756 480 SEMPEWAQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (1300)
Q Consensus 480 ~~Lp~~~~~~f-~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP 558 (1300)
+.|++.++..| .+|..|||+|.++++.++.+ +|++++||||||||++|+++++..+.......+ ...+.++|||+|
T Consensus 16 ~~l~~~v~~~~~~~~~~~tpiQ~~Ai~~il~g-~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~--~~~~~~~LyIsP 92 (876)
T PRK13767 16 DLLRPYVREWFKEKFGTFTPPQRYAIPLIHEG-KNVLISSPTGSGKTLAAFLAIIDELFRLGREGE--LEDKVYCLYVSP 92 (876)
T ss_pred hhcCHHHHHHHHHccCCCCHHHHHHHHHHHcC-CCEEEECCCCCcHHHHHHHHHHHHHHhhccccC--CCCCeEEEEEcC
Confidence 45777777777 57889999999999998765 689999999999999999999998875321110 123578999999
Q ss_pred cHHHHHHHHHHHhhhc-----------ccC-CcEEEEEeCCCccchhh---hccceEEEECcchHHHHHhhcCCCccccc
Q 000756 559 MKALVAEVVGNLSNRL-----------QMY-DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQL 623 (1300)
Q Consensus 559 ~kaLa~q~~~~~~~~l-----------~~~-gi~V~~ltGd~~~~~~~---~~~~~IIV~TPekld~l~r~~~~~~~l~~ 623 (1300)
+|+|+.|+++++...+ ... +++|...+||.....+. ...++|+|||||+|..+.+.......+.+
T Consensus 93 traLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~ 172 (876)
T PRK13767 93 LRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRT 172 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhc
Confidence 9999999998766422 122 67899999998765432 24689999999999777765443346789
Q ss_pred ccEEEEeccccccc-CChhHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccc----cCceEEecCC-ccc
Q 000756 624 VKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNL----EKGLFYFDNS-YRP 697 (1300)
Q Consensus 624 v~liIiDEaH~l~d-~rg~~le~iv~rl~~~~~~~~~~~riV~LSATlpn~~dva~~L~~~~----~~~~~~f~~~-~rp 697 (1300)
+++|||||+|.+.+ .||..++.++.|+.+.. ....|+||+|||++|.++++.|+.... ...+...... .++
T Consensus 173 l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~---~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~ 249 (876)
T PRK13767 173 VKWVIVDEIHSLAENKRGVHLSLSLERLEELA---GGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKP 249 (876)
T ss_pred CCEEEEechhhhccCccHHHHHHHHHHHHHhc---CCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCcc
Confidence 99999999999986 69999999999886543 357899999999999999999997531 1112222222 122
Q ss_pred ccceeeEeeeecCchhHHHHHHHHHHHHHHHHHhC-CCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHH
Q 000756 698 VPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAG-KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREI 776 (1300)
Q Consensus 698 v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~ 776 (1300)
..+............ ....+...++..+..... .+++||||+|++.|+.++..|.......
T Consensus 250 ~~i~v~~p~~~l~~~--~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~---------------- 311 (876)
T PRK13767 250 FDIKVISPVDDLIHT--PAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEE---------------- 311 (876)
T ss_pred ceEEEeccCcccccc--ccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhh----------------
Confidence 222111000000000 001112223333333322 6789999999999999999987643110
Q ss_pred HHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCc
Q 000756 777 LQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAW 856 (1300)
Q Consensus 777 l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~ 856 (1300)
....++++|||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ |+++.
T Consensus 312 ---------------~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~----~~~P~--- 369 (876)
T PRK13767 312 ---------------YDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVL----LGSPK--- 369 (876)
T ss_pred ---------------ccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEE----eCCCC---
Confidence 12367999999999999999999999999999999999999999999999998 77765
Q ss_pred ccCCHHHHHHhhhccCCCCCCCceEEEEEeCC-CcHHH---HHH-hhc---CCCCcccchhHhHHHHHHHHHHhccccCH
Q 000756 857 TELSPLDIMQMLGRAGRPQYDSYGEGIIITGH-SELRY---YLS-LMN---QQLPIESQFVSKLADQLNAEIVLGTVQNA 928 (1300)
Q Consensus 857 ~~~S~~d~lQr~GRAGR~g~d~~G~~iil~~~-~~~~~---y~~-ll~---~~lPiES~l~~~l~d~lnaEI~~g~i~~~ 928 (1300)
|+.+|+||+|||||.+ +..+.+++++.. .+.-. +.+ ... ++..+...-...|..++.+-++.+ .-+.
T Consensus 370 ---sv~~ylQRiGRaGR~~-g~~~~g~ii~~~~~~l~e~~~~~~~~~~~~ie~~~~~~~~~dvl~q~i~~~~~~~-~~~~ 444 (876)
T PRK13767 370 ---SVSRLLQRIGRAGHRL-GEVSKGRIIVVDRDDLVECAVLLKKAREGKIDRVHIPKNPLDVLAQHIVGMAIER-PWDI 444 (876)
T ss_pred ---CHHHHHHhcccCCCCC-CCCCcEEEEEcCchhHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHcC-CCCH
Confidence 8999999999999864 333445554433 23211 111 111 111122222345778887765554 6689
Q ss_pred HHHHHHHHhhHHHHH
Q 000756 929 KEACNWIGYTYLYIR 943 (1300)
Q Consensus 929 ~d~~~wL~~T~ly~r 943 (1300)
+++.+|+..||.|+.
T Consensus 445 ~~~~~~~~~~~~~~~ 459 (876)
T PRK13767 445 EEAYNIVRRAYPYRD 459 (876)
T ss_pred HHHHHHHhccCCccc
Confidence 999999999998875
No 13
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=2.7e-44 Score=432.50 Aligned_cols=658 Identities=23% Similarity=0.324 Sum_probs=440.5
Q ss_pred CCChhhHhhc---CCCCCCCHHHHHHH--HHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEE
Q 000756 481 EMPEWAQPAF---KGMTQLNRVQSRVY--KSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVY 555 (1300)
Q Consensus 481 ~Lp~~~~~~f---~g~~~ln~iQ~~~i--~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~ 555 (1300)
.+|+-....+ +|...+..+|.+|+ +.++ +++|++..+||++|||+++.+.+++.+...+ .+++.
T Consensus 206 ~~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~-e~~nliys~Pts~gktlvaeilml~~~l~~r----------r~~ll 274 (1008)
T KOG0950|consen 206 RLPTKVSHLYAKDKGILKLFEWQAECLSLPRLL-ERKNLIYSLPTSAGKTLVAEILMLREVLCRR----------RNVLL 274 (1008)
T ss_pred cCchHHHHHHHHhhhHHHHHHHHHHHhcchhhh-cccceEEeCCCccchHHHHHHHHHHHHHHHh----------hceeE
Confidence 4565555443 78889999999998 4455 6789999999999999999999999877642 36899
Q ss_pred EcCcHHHHHHHHHHHhhhcccCCcEEEEEeCCCccchhhhccceEEEECcchHHHHHhhcCCCcccccccEEEEeccccc
Q 000756 556 VAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (1300)
Q Consensus 556 iaP~kaLa~q~~~~~~~~l~~~gi~V~~ltGd~~~~~~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l 635 (1300)
+.|..+.+++....+..++.+.|+.|.+.+|...... ..+...+.|||-||-..+.........+..+++||+||.|++
T Consensus 275 ilp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~-~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi 353 (1008)
T KOG0950|consen 275 ILPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPEK-RRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMI 353 (1008)
T ss_pred ecceeehhHHHHhhhhhhccccCCcchhhcccCCCCC-cccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeee
Confidence 9999999999999999999999999999997665443 345678999999997666655544455677899999999999
Q ss_pred cc-CChhHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCcccccceeeEee-eecCchh
Q 000756 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIG-IQVKKPL 713 (1300)
Q Consensus 636 ~d-~rg~~le~iv~rl~~~~~~~~~~~riV~LSATlpn~~dva~~L~~~~~~~~~~f~~~~rpv~l~~~~~~-~~~~~~~ 713 (1300)
+| +||..+|.+++.++...... .+|+||||||+||..+++.||... .+...|||+|+...+.. ......
T Consensus 354 ~d~~rg~~lE~~l~k~~y~~~~~--~~~iIGMSATi~N~~lL~~~L~A~------~y~t~fRPv~L~E~ik~G~~i~~~- 424 (1008)
T KOG0950|consen 354 GDKGRGAILELLLAKILYENLET--SVQIIGMSATIPNNSLLQDWLDAF------VYTTRFRPVPLKEYIKPGSLIYES- 424 (1008)
T ss_pred eccccchHHHHHHHHHHHhcccc--ceeEeeeecccCChHHHHHHhhhh------heecccCcccchhccCCCcccccc-
Confidence 99 79999999999998754433 489999999999999999999853 57788999999876532 111111
Q ss_pred HHHHHHHHHH---------------HHHHHHHhC-CCeEEEEEcChHHHHHHHHHHHHHhhccccccccccc-CchhHHH
Q 000756 714 QRFQLMNDLC---------------YEKVVAVAG-KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKE-DSVSREI 776 (1300)
Q Consensus 714 ~~~~~~~~~~---------------~~~i~~~~~-~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~-~~~~~~~ 776 (1300)
.+...+.++. ...+.+... +.++|||||+|+.|+.+|..+.........-..++.. +-.+...
T Consensus 425 ~r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~ 504 (1008)
T KOG0950|consen 425 SRNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISN 504 (1008)
T ss_pred hhhHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHh
Confidence 1222222211 111222333 5679999999999999997776554322111111110 0000000
Q ss_pred HHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCc
Q 000756 777 LQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAW 856 (1300)
Q Consensus 777 l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~ 856 (1300)
........-+.-|+..+++|+++||+|++.++|+.|+..|+.|.+.|++||+|++||||+|+.+|||..-. +. -
T Consensus 505 ~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~-~g-----~ 578 (1008)
T KOG0950|consen 505 LLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPY-VG-----R 578 (1008)
T ss_pred HhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCc-cc-----c
Confidence 11112234567799999999999999999999999999999999999999999999999999999997221 11 1
Q ss_pred ccCCHHHHHHhhhccCCCCCCCceEEEEEeCCCcHHHHHHhhcCCCC-cccchhH----hHHHHHHHHHHhccccCHHHH
Q 000756 857 TELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLP-IESQFVS----KLADQLNAEIVLGTVQNAKEA 931 (1300)
Q Consensus 857 ~~~S~~d~lQr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~lP-iES~l~~----~l~d~lnaEI~~g~i~~~~d~ 931 (1300)
..++..+|.||+|||||.|.|+.|.+++++...+...+..+++.++| +-|++.. .+...+..-|+.|...+.+|.
T Consensus 579 ~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv~~~~~~~~S~l~~e~~g~~~~~ilsvI~~~ia~t~~di 658 (1008)
T KOG0950|consen 579 EFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVRELVNSPLKPLNSCLSNEVNGPILMAILSLISLKIAETAEDI 658 (1008)
T ss_pred chhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHHHHHhccccccccccccccccccceeehhhhcchhhhhHHHH
Confidence 34688899999999999999999999999999999888888887664 5566633 121234445667777889999
Q ss_pred HHHHHhhHHHHHHhcCCcccCCCccccccch-hhhhHHHHHHHHHHHHHHHCCCcc-ccccCCceeeccccccccccccc
Q 000756 932 CNWIGYTYLYIRMLRNPALYGLAPEVLKEDI-TLGERRADLVHTAATILDRNNLVK-YDRKSGYFQVTDLGRIASYYYIS 1009 (1300)
Q Consensus 932 ~~wL~~T~ly~r~~~nP~~y~~~~~~~~~~~-~l~~~~~~li~~a~~~L~~~~~i~-~~~~~~~~~~T~lG~ias~~yi~ 1009 (1300)
..+..+|++++... |..-....+. ..+. .+....+ ..+....+|. .........+|.||+.+=.-.++
T Consensus 659 ~~~va~tl~s~q~~--~~~~~~~le~-~s~ql~~~~~~~-------d~~l~~d~i~~~~~~~~~~~~t~Lg~a~f~~~~~ 728 (1008)
T KOG0950|consen 659 LHFVAVTLLSAQEK--PENVREQLEM-ESDQLVINDFKS-------DQLLEKDFIYKKQIENLRENITRLGRACFNAGSD 728 (1008)
T ss_pred HHHHHHhhhhcccc--hhhhhhcccc-hhhhhccchhhH-------HHHHHHHHHHhHHHHhhhhhhhhhhhhhhcccCC
Confidence 99999998876532 1111111110 0000 0001110 1111112222 01111112288999887666666
Q ss_pred cccHHHHHhhcCCCC----------------------ChHHHHHHhcCCcccccCcCCchHHHHHHHHH-------hcCC
Q 000756 1010 HGTISTYNEHLKPTM----------------------GDIELCRLFSLSEEFKYVTVRQDEKMELAKLL-------DRVP 1060 (1300)
Q Consensus 1010 ~~T~~~~~~~l~~~~----------------------~~~~il~ils~s~EF~~i~vR~~E~~eL~~L~-------~~~p 1060 (1300)
+.-...+...|+..+ +..+.+..++. |..++ .-|+. +.++. .++.
T Consensus 729 ~~~a~~l~~~L~~~~~~~vle~~lh~lylvtP~~~~~~~~dwli~f~i---~~~L~--~~~~~-~~~~~G~~e~fi~~~~ 802 (1008)
T KOG0950|consen 729 PEVANILFADLKKSLPQLVLESSLHLLYLVTPYLEVMNDIDWLIYFQI---YHTLP--SPEQK-LAKLLGVIESFIEKCV 802 (1008)
T ss_pred hhhhHHHHHHHHHhhhccccccccceeeeecchHhhcccccHHHHHHH---HhcCC--cHHHH-HHhhhchHHHHHHHhh
Confidence 655544444333221 11111111110 01111 11111 11111 0110
Q ss_pred C-CCCCCC-CCh---hHHHHHHHHHHHhCcCCC----CCcch-hhHHHHHHhHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Q 000756 1061 I-PVKESL-EEP---SAKINVLLQAYISQLKLE----GLSLT-SDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLS 1130 (1300)
Q Consensus 1061 ~-pvk~~~-~~~---~~Kv~iLLQa~isr~~l~----~~~L~-~D~~~I~q~a~RLlral~eI~~~~g~~~~a~~~l~L~ 1130 (1300)
. ...... +-+ ..=+.+.||-+++..++. .|... .=+...++++.+...++.-.|.+-+|......+-++.
T Consensus 803 ~gqs~~~~~~~~~~~r~y~~l~L~~li~espi~~V~~kYk~~rg~lqall~~a~~~a~~It~Fce~l~w~~~~~l~~~~~ 882 (1008)
T KOG0950|consen 803 SGQSVRNLQNVQKRKRLYVALALQKLINESPIRTVAEKYKVERGRLQALLSNASSFASLITFFCESIQWFPLRALLSEFY 882 (1008)
T ss_pred hccccccccchhHHHHHHHHHHHHHHHhhCcHHHHHHHhCchHHHHHHHHhcchhHHHHHHHHHHHhhhcchHHHHHHHH
Confidence 0 000000 111 112567788999987762 23222 3345678899999999999999999984344444566
Q ss_pred HHHHhcccCCccccccccCCCHHHHHHHHhCCC-cchhhccCChHHHhhhhc
Q 000756 1131 KMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF-AWERYYDLSPQELGELIR 1181 (1300)
Q Consensus 1131 k~i~q~~W~~~~pL~Q~p~i~~~~i~~le~~~~-~~~~l~~l~~~el~~ll~ 1181 (1300)
+.+..+.-.+..||.-+|++.....+++...|+ ++.+|..-++.++..-+.
T Consensus 883 ~rl~~g~~~eL~~Lmrv~~~~~~RAr~lf~Agf~tv~~iA~a~p~klvkel~ 934 (1008)
T KOG0950|consen 883 GRLSFGGHAELIPLMRVPDVKAERARQLFKAGFTSVGSIANATPEKLVKELP 934 (1008)
T ss_pred HHHhccchhhhhhhhcCchhHHHHHHHHHHhhccchHHHhcCChHHHHHHhh
Confidence 677777777889999999999999999999998 888888888888766553
No 14
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=2.6e-43 Score=434.44 Aligned_cols=403 Identities=24% Similarity=0.322 Sum_probs=308.3
Q ss_pred CCCCChhhHhhc-CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEc
Q 000756 479 ISEMPEWAQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA 557 (1300)
Q Consensus 479 i~~Lp~~~~~~f-~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~ia 557 (1300)
.+.||+++++.| ..|.+|||.|.++|+.++. ++|+||+||||||||.+|.||++..+..... ....++..+|||+
T Consensus 5 ~~~l~~~v~~~~~~~~~~~t~~Q~~a~~~i~~-G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~---~~~~~~i~~lYIs 80 (814)
T COG1201 5 FNILDPRVREWFKRKFTSLTPPQRYAIPEIHS-GENVLIIAPTGSGKTEAAFLPVINELLSLGK---GKLEDGIYALYIS 80 (814)
T ss_pred hhhcCHHHHHHHHHhcCCCCHHHHHHHHHHhC-CCceEEEcCCCCChHHHHHHHHHHHHHhccC---CCCCCceEEEEeC
Confidence 456899999999 4599999999999999985 5889999999999999999999999987621 1112467999999
Q ss_pred CcHHHHHHHHHHHhhhcccCCcEEEEEeCCCccchhh---hccceEEEECcchHHHHHhhcCCCcccccccEEEEecccc
Q 000756 558 PMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL 634 (1300)
Q Consensus 558 P~kaLa~q~~~~~~~~l~~~gi~V~~ltGd~~~~~~~---~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~ 634 (1300)
|.|||...+.+++...+..+|+.|..-|||++...++ .+.++|++||||.+..++-....+..+.+|++|||||+|.
T Consensus 81 PLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHe 160 (814)
T COG1201 81 PLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHA 160 (814)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhh
Confidence 9999999999999999999999999999999876544 3578999999999977766555567899999999999999
Q ss_pred ccc-CChhHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEec-CCcccccceeeEeeeecCch
Q 000756 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFD-NSYRPVPLSQQYIGIQVKKP 712 (1300)
Q Consensus 635 l~d-~rg~~le~iv~rl~~~~~~~~~~~riV~LSATlpn~~dva~~L~~~~~~~~~~f~-~~~rpv~l~~~~~~~~~~~~ 712 (1300)
+.+ .||..+...+.|+.... + ++|.||||||+.+++++++||..... .+-... ...++..+............
T Consensus 161 l~~sKRG~~Lsl~LeRL~~l~---~-~~qRIGLSATV~~~~~varfL~g~~~-~~~Iv~~~~~k~~~i~v~~p~~~~~~~ 235 (814)
T COG1201 161 LAESKRGVQLALSLERLRELA---G-DFQRIGLSATVGPPEEVAKFLVGFGD-PCEIVDVSAAKKLEIKVISPVEDLIYD 235 (814)
T ss_pred hhccccchhhhhhHHHHHhhC---c-ccEEEeehhccCCHHHHHHHhcCCCC-ceEEEEcccCCcceEEEEecCCccccc
Confidence 986 79999999999986532 2 89999999999999999999987631 121221 22222222211111110001
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhh
Q 000756 713 LQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDL 792 (1300)
Q Consensus 713 ~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~l 792 (1300)
......+...+++.+.+ ...+|||+|||..|+.++..|.....
T Consensus 236 ~~~~~~~~~~i~~~v~~---~~ttLIF~NTR~~aE~l~~~L~~~~~---------------------------------- 278 (814)
T COG1201 236 EELWAALYERIAELVKK---HRTTLIFTNTRSGAERLAFRLKKLGP---------------------------------- 278 (814)
T ss_pred cchhHHHHHHHHHHHhh---cCcEEEEEeChHHHHHHHHHHHHhcC----------------------------------
Confidence 01112222233333333 34899999999999999999887541
Q ss_pred hcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccC
Q 000756 793 LPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAG 872 (1300)
Q Consensus 793 l~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAG 872 (1300)
..+..|||.++++.|..+|+.|++|.++++|||++|+-|||+-+++.||+ |..|+ |+..++||+||||
T Consensus 279 --~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq----~~SP~------sV~r~lQRiGRsg 346 (814)
T COG1201 279 --DIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQ----LGSPK------SVNRFLQRIGRAG 346 (814)
T ss_pred --CceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEE----eCCcH------HHHHHhHhccccc
Confidence 45899999999999999999999999999999999999999999999998 77766 8999999999999
Q ss_pred CCCCCCceEEEEEeCCCcHHHHHH------hhc---CCCCcccchhHhHHHHHHHHHHhccccCHHHHHHHHHhhHHHH
Q 000756 873 RPQYDSYGEGIIITGHSELRYYLS------LMN---QQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYI 942 (1300)
Q Consensus 873 R~g~d~~G~~iil~~~~~~~~y~~------ll~---~~lPiES~l~~~l~d~lnaEI~~g~i~~~~d~~~wL~~T~ly~ 942 (1300)
+. .+...++++++.. ..+.... ... ...++.-.-+..|..++.+.+... --+.+++.+.+..+|-|+
T Consensus 347 Hr-~~~~Skg~ii~~~-r~dllE~~vi~~~a~~g~le~~~i~~~~LDVLaq~ivg~~~~~-~~~~~~~y~~vrraypy~ 422 (814)
T COG1201 347 HR-LGEVSKGIIIAED-RDDLLECLVLADLALEGKLERIKIPKNPLDVLAQQIVGMALEK-VWEVEEAYRVVRRAYPYA 422 (814)
T ss_pred cc-cCCcccEEEEecC-HHHHHHHHHHHHHHHhCCcccCCCCCcchhHHHHHHHHHHhhC-cCCHHHHHHHHHhccccc
Confidence 84 4677889999887 3233222 111 123344444456777787777766 677888888887777664
No 15
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.7e-43 Score=448.57 Aligned_cols=356 Identities=21% Similarity=0.222 Sum_probs=271.2
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcC
Q 000756 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (1300)
Q Consensus 481 ~Lp~~~~~~f--~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP 558 (1300)
.|++++..++ .||+.|+++|.++++.++.+ +|++++||||||||++|.+|+++.+... .+.++|||+|
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G-~nvvv~apTGSGKTla~~LPiL~~l~~~---------~~~~aL~l~P 89 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAG-RHVVVATGTASGKSLAYQLPVLSALADD---------PRATALYLAP 89 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCC-CCEEEECCCCCcHHHHHHHHHHHHHhhC---------CCcEEEEEcC
Confidence 4677788877 68999999999999998766 6799999999999999999999998653 2458999999
Q ss_pred cHHHHHHHHHHHhhhcccCCcEEEEEeCCCccchhh--hccceEEEECcchHHH-HHhh-cCCCcccccccEEEEecccc
Q 000756 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ--IEETQIIVTTPEKWDI-ITRK-SGDRTYTQLVKLLIIDEIHL 634 (1300)
Q Consensus 559 ~kaLa~q~~~~~~~~l~~~gi~V~~ltGd~~~~~~~--~~~~~IIV~TPekld~-l~r~-~~~~~~l~~v~liIiDEaH~ 634 (1300)
||+||.|+...++++. ..++++..++|+.....+. ..+++|+|+||+.+.. +... .....+++++++|||||+|.
T Consensus 90 traLa~q~~~~l~~l~-~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~ 168 (742)
T TIGR03817 90 TKALAADQLRAVRELT-LRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHS 168 (742)
T ss_pred hHHHHHHHHHHHHHhc-cCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhh
Confidence 9999999999998865 4578999999998755432 3568999999998742 2221 11123578999999999999
Q ss_pred cccCChhHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCcccccceeeEeeeec-----
Q 000756 635 LHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQV----- 709 (1300)
Q Consensus 635 l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LSATlpn~~dva~~L~~~~~~~~~~f~~~~rpv~l~~~~~~~~~----- 709 (1300)
+.+.+|..+..++.|+.+.....+.++|+|++|||++|+.+++.++...+ ...++....|..........+.
T Consensus 169 ~~g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~---~~~i~~~~~~~~~~~~~~~~p~~~~~~ 245 (742)
T TIGR03817 169 YRGVFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAAAASRLIGAP---VVAVTEDGSPRGARTVALWEPPLTELT 245 (742)
T ss_pred ccCccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCCC---eEEECCCCCCcCceEEEEecCCccccc
Confidence 98789999999999998887777788999999999999988887775443 3334444444332222111111
Q ss_pred -Cc--hhHH--HHHHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcc
Q 000756 710 -KK--PLQR--FQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMV 784 (1300)
Q Consensus 710 -~~--~~~~--~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~ 784 (1300)
.. ...+ .......+...+. .+.++||||+||+.|+.++..|+.......
T Consensus 246 ~~~~~~~r~~~~~~~~~~l~~l~~---~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~----------------------- 299 (742)
T TIGR03817 246 GENGAPVRRSASAEAADLLADLVA---EGARTLTFVRSRRGAELVAAIARRLLGEVD----------------------- 299 (742)
T ss_pred cccccccccchHHHHHHHHHHHHH---CCCCEEEEcCCHHHHHHHHHHHHHHHHhhc-----------------------
Confidence 00 0000 0111112222221 267999999999999999998876431110
Q ss_pred cchhhhhhhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHH
Q 000756 785 KSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDI 864 (1300)
Q Consensus 785 ~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~ 864 (1300)
..+..++..|||||++++|..+++.|++|.++|||||+++++|||+|++++||+ |+.|. +..+|
T Consensus 300 ------~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~----~~~P~------s~~~y 363 (742)
T TIGR03817 300 ------PDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVI----AGFPG------TRASL 363 (742)
T ss_pred ------cccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEE----eCCCC------CHHHH
Confidence 012346789999999999999999999999999999999999999999999998 77765 89999
Q ss_pred HHhhhccCCCCCCCceEEEEEeCCCcHHHH
Q 000756 865 MQMLGRAGRPQYDSYGEGIIITGHSELRYY 894 (1300)
Q Consensus 865 lQr~GRAGR~g~d~~G~~iil~~~~~~~~y 894 (1300)
+||+|||||.| ..|.+++++..+..+.|
T Consensus 364 ~qRiGRaGR~G--~~g~ai~v~~~~~~d~~ 391 (742)
T TIGR03817 364 WQQAGRAGRRG--QGALVVLVARDDPLDTY 391 (742)
T ss_pred HHhccccCCCC--CCcEEEEEeCCChHHHH
Confidence 99999999987 78999999876544433
No 16
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=4.7e-43 Score=416.74 Aligned_cols=386 Identities=27% Similarity=0.379 Sum_probs=301.6
Q ss_pred CCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhc
Q 000756 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1300)
Q Consensus 495 ~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l 574 (1300)
++..+|.+||..+..+ +.|+|+|+|.||||++|..+|.-.-.. ..|+||.+|.|||.+|.+++|+..|
T Consensus 297 elD~FQk~Ai~~lerg-~SVFVAAHTSAGKTvVAEYAialaq~h-----------~TR~iYTSPIKALSNQKfRDFk~tF 364 (1248)
T KOG0947|consen 297 ELDTFQKEAIYHLERG-DSVFVAAHTSAGKTVVAEYAIALAQKH-----------MTRTIYTSPIKALSNQKFRDFKETF 364 (1248)
T ss_pred CccHHHHHHHHHHHcC-CeEEEEecCCCCcchHHHHHHHHHHhh-----------ccceEecchhhhhccchHHHHHHhc
Confidence 7889999999976554 779999999999999999998654333 3489999999999999999999988
Q ss_pred ccCCcEEEEEeCCCccchhhhccceEEEECcchHHHHHhhcCCCcccccccEEEEeccccccc-CChhHHHHHHHHHHHH
Q 000756 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQ 653 (1300)
Q Consensus 575 ~~~gi~V~~ltGd~~~~~~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~iv~rl~~~ 653 (1300)
.. |+.+|||.++++ .+.++|+|.|-|..++-+.. ..++++.+||+||+|.+.| +||.++|.++--
T Consensus 365 ~D----vgLlTGDvqinP----eAsCLIMTTEILRsMLYrga--dliRDvE~VIFDEVHYiND~eRGvVWEEViIM---- 430 (1248)
T KOG0947|consen 365 GD----VGLLTGDVQINP----EASCLIMTTEILRSMLYRGA--DLIRDVEFVIFDEVHYINDVERGVVWEEVIIM---- 430 (1248)
T ss_pred cc----cceeecceeeCC----CcceEeehHHHHHHHHhccc--chhhccceEEEeeeeecccccccccceeeeee----
Confidence 74 558999999887 58899999998755554444 4788899999999999999 899999998753
Q ss_pred HhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCcccccceeeEeeeecCc------hh---H----HHHHH-
Q 000756 654 IETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKK------PL---Q----RFQLM- 719 (1300)
Q Consensus 654 ~~~~~~~~riV~LSATlpn~~dva~~L~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~------~~---~----~~~~~- 719 (1300)
.+..+++|+||||+||..++|.|++....+.+++.....|||||++++..-.... .. + -....
T Consensus 431 ---lP~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~ 507 (1248)
T KOG0947|consen 431 ---LPRHVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLK 507 (1248)
T ss_pred ---ccccceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhc
Confidence 4889999999999999999999999988888999999999999998764311000 00 0 00000
Q ss_pred -----------------------------------------HH--HHHHHHHHHhC---CCeEEEEEcChHHHHHHHHHH
Q 000756 720 -----------------------------------------ND--LCYEKVVAVAG---KHQVLIFVHSRKETAKTARAI 753 (1300)
Q Consensus 720 -----------------------------------------~~--~~~~~i~~~~~---~~~vLVFv~sr~~~~~~a~~L 753 (1300)
.. ..|-.+..+.. --|++|||-||+.|...|..|
T Consensus 508 ~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L 587 (1248)
T KOG0947|consen 508 KEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYL 587 (1248)
T ss_pred ccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHH
Confidence 00 11222222222 348999999999999999999
Q ss_pred HHHhhcccccccccccCchhHHHHHhhhhcc--------cchhhhhhhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEE
Q 000756 754 RDTALENDTLGRFLKEDSVSREILQSHTDMV--------KSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLV 825 (1300)
Q Consensus 754 ~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~--------~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLV 825 (1300)
....+..+.- .+.-.-.+.+..... +--.+.+++..|+|+||||+-+--++.|+-+|..|.++||+
T Consensus 588 ~~~nL~~~~E------KseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLF 661 (1248)
T KOG0947|consen 588 TNLNLTDSKE------KSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLF 661 (1248)
T ss_pred hccCcccchh------HHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEe
Confidence 8765432210 000011112211111 12456788899999999999999999999999999999999
Q ss_pred eccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCCCCCCceEEEEEeCCC--cHHHHHHh-hcCCC
Q 000756 826 STATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS--ELRYYLSL-MNQQL 902 (1300)
Q Consensus 826 aT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d~~G~~iil~~~~--~~~~y~~l-l~~~l 902 (1300)
||-|+|+|||+|+.+||+.+....|+.. +.++.+-+|.||+|||||.|.|..|.+++++... ....+.++ +..+.
T Consensus 662 ATETFAMGVNMPARtvVF~Sl~KhDG~e--fR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~li~G~~~ 739 (1248)
T KOG0947|consen 662 ATETFAMGVNMPARTVVFSSLRKHDGNE--FRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRLIMGGPT 739 (1248)
T ss_pred ehhhhhhhcCCCceeEEeeehhhccCcc--eeecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhHhcCCCc
Confidence 9999999999999999999998888764 6889999999999999999999999999999765 45566665 56789
Q ss_pred CcccchhHhHHHHHH
Q 000756 903 PIESQFVSKLADQLN 917 (1300)
Q Consensus 903 PiES~l~~~l~d~ln 917 (1300)
+++|||.-.....||
T Consensus 740 ~L~SQFRlTY~MILn 754 (1248)
T KOG0947|consen 740 RLESQFRLTYGMILN 754 (1248)
T ss_pred hhhhhhhhHHHHHHH
Confidence 999999865444444
No 17
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=2.2e-42 Score=420.99 Aligned_cols=345 Identities=19% Similarity=0.271 Sum_probs=260.6
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcC
Q 000756 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (1300)
Q Consensus 481 ~Lp~~~~~~f--~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP 558 (1300)
.|++++..++ .||..|+|+|.++++.++.+ +|+|++||||||||++|++|+++.+....... ......++|||+|
T Consensus 7 ~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g-~dvlv~apTGsGKTla~~lpil~~l~~~~~~~--~~~~~~~aLil~P 83 (456)
T PRK10590 7 GLSPDILRAVAEQGYREPTPIQQQAIPAVLEG-RDLMASAQTGTGKTAGFTLPLLQHLITRQPHA--KGRRPVRALILTP 83 (456)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCCcHHHHHHHHHHHHhhhccccc--ccCCCceEEEEeC
Confidence 3677777777 78999999999999999876 56999999999999999999999986542210 0112458999999
Q ss_pred cHHHHHHHHHHHhhhcccCCcEEEEEeCCCccchhh---hccceEEEECcchHHHHHhhcCCCcccccccEEEEeccccc
Q 000756 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (1300)
Q Consensus 559 ~kaLa~q~~~~~~~~l~~~gi~V~~ltGd~~~~~~~---~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l 635 (1300)
|++||.|+++.+..++...++++..++|+.+...+. ...++|+|+||++|..+..... ..++.+++|||||||.+
T Consensus 84 treLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~--~~l~~v~~lViDEah~l 161 (456)
T PRK10590 84 TRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNA--VKLDQVEILVLDEADRM 161 (456)
T ss_pred cHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCC--cccccceEEEeecHHHH
Confidence 999999999999998888889999999998766542 3468999999999744444332 35788999999999999
Q ss_pred cc-CChhHHHHHHHHHHHHHhhccCCeeEEEEcccCCC-hHHHHHHHhccccCceEEecCCcccccceeeEeeeecCchh
Q 000756 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713 (1300)
Q Consensus 636 ~d-~rg~~le~iv~rl~~~~~~~~~~~riV~LSATlpn-~~dva~~L~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~ 713 (1300)
.+ .+...+..++. ..+...|++++|||+++ ..+++.++..++. .+...........+.+.+..+...
T Consensus 162 l~~~~~~~i~~il~-------~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~-~i~~~~~~~~~~~i~~~~~~~~~~--- 230 (456)
T PRK10590 162 LDMGFIHDIRRVLA-------KLPAKRQNLLFSATFSDDIKALAEKLLHNPL-EIEVARRNTASEQVTQHVHFVDKK--- 230 (456)
T ss_pred hccccHHHHHHHHH-------hCCccCeEEEEeCCCcHHHHHHHHHHcCCCe-EEEEecccccccceeEEEEEcCHH---
Confidence 87 34444444433 34567789999999987 4566665554431 122222222222344444333221
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhh
Q 000756 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793 (1300)
Q Consensus 714 ~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll 793 (1300)
.+... ...+.......++||||+++..+..++..|...+
T Consensus 231 ~k~~~-----l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g------------------------------------ 269 (456)
T PRK10590 231 RKREL-----LSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDG------------------------------------ 269 (456)
T ss_pred HHHHH-----HHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCC------------------------------------
Confidence 11111 1222333345789999999999999998886532
Q ss_pred cCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCC
Q 000756 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (1300)
Q Consensus 794 ~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR 873 (1300)
+.+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ |+++. ++.+|+||+|||||
T Consensus 270 -~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~----~~~P~------~~~~yvqR~GRaGR 338 (456)
T PRK10590 270 -IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVN----YELPN------VPEDYVHRIGRTGR 338 (456)
T ss_pred -CCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEE----eCCCC------CHHHhhhhcccccc
Confidence 34678899999999999999999999999999999999999999999998 88776 88999999999999
Q ss_pred CCCCCceEEEEEeCCCcHHHHH
Q 000756 874 PQYDSYGEGIIITGHSELRYYL 895 (1300)
Q Consensus 874 ~g~d~~G~~iil~~~~~~~~y~ 895 (1300)
.| ..|.+++++...+...+.
T Consensus 339 ~g--~~G~ai~l~~~~d~~~~~ 358 (456)
T PRK10590 339 AA--ATGEALSLVCVDEHKLLR 358 (456)
T ss_pred CC--CCeeEEEEecHHHHHHHH
Confidence 87 789999998877655433
No 18
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=3.2e-42 Score=424.64 Aligned_cols=346 Identities=21% Similarity=0.273 Sum_probs=257.9
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcC
Q 000756 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (1300)
Q Consensus 481 ~Lp~~~~~~f--~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP 558 (1300)
.||+.+...+ .||..|||+|.++++.++.+ +|++++||||||||++|++|++..+....... .....++++|||+|
T Consensus 127 ~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g-~dviv~ApTGSGKTlayllPil~~l~~~~~~~-~~~~~~~~aLIL~P 204 (518)
T PLN00206 127 GLPPKLLLNLETAGYEFPTPIQMQAIPAALSG-RSLLVSADTGSGKTASFLVPIISRCCTIRSGH-PSEQRNPLAMVLTP 204 (518)
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-CCEEEEecCCCCccHHHHHHHHHHHHhhcccc-ccccCCceEEEEeC
Confidence 4788888877 68999999999999999865 67999999999999999999998876432111 11124679999999
Q ss_pred cHHHHHHHHHHHhhhcccCCcEEEEEeCCCccchhh---hccceEEEECcchH-HHHHhhcCCCcccccccEEEEecccc
Q 000756 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHL 634 (1300)
Q Consensus 559 ~kaLa~q~~~~~~~~l~~~gi~V~~ltGd~~~~~~~---~~~~~IIV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH~ 634 (1300)
||+||.|+.+.++.+....++++..+.|+.....+. ..+++|+|+||++| +.+.++. ..++++++|||||||.
T Consensus 205 TreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~---~~l~~v~~lViDEad~ 281 (518)
T PLN00206 205 TRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHD---IELDNVSVLVLDEVDC 281 (518)
T ss_pred CHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCC---ccchheeEEEeecHHH
Confidence 999999999998887777788888888876654432 34689999999997 5554442 4678899999999999
Q ss_pred ccc-CChhHHHHHHHHHHHHHhhccCCeeEEEEcccCCCh-HHHHHHHhccccCceEEecCCccccc-ceeeEeeeecCc
Q 000756 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY-EDVALFLRVNLEKGLFYFDNSYRPVP-LSQQYIGIQVKK 711 (1300)
Q Consensus 635 l~d-~rg~~le~iv~rl~~~~~~~~~~~riV~LSATlpn~-~dva~~L~~~~~~~~~~f~~~~rpv~-l~~~~~~~~~~~ 711 (1300)
+.+ ++.+.+..++.. -+..|++++|||+++. +.++.++..++ ..+.+....++.. +.+.+..+....
T Consensus 282 ml~~gf~~~i~~i~~~--------l~~~q~l~~SATl~~~v~~l~~~~~~~~--~~i~~~~~~~~~~~v~q~~~~~~~~~ 351 (518)
T PLN00206 282 MLERGFRDQVMQIFQA--------LSQPQVLLFSATVSPEVEKFASSLAKDI--ILISIGNPNRPNKAVKQLAIWVETKQ 351 (518)
T ss_pred HhhcchHHHHHHHHHh--------CCCCcEEEEEeeCCHHHHHHHHHhCCCC--EEEEeCCCCCCCcceeEEEEeccchh
Confidence 886 344444433322 2467999999999863 45566555432 1233333333332 333333333221
Q ss_pred hhHHHHHHHHHHHHHHHHHhC-CCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhh
Q 000756 712 PLQRFQLMNDLCYEKVVAVAG-KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLK 790 (1300)
Q Consensus 712 ~~~~~~~~~~~~~~~i~~~~~-~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~ 790 (1300)
+... +++.+..... ..++||||+++..+..++..|....
T Consensus 352 ---k~~~----l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~--------------------------------- 391 (518)
T PLN00206 352 ---KKQK----LFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVT--------------------------------- 391 (518)
T ss_pred ---HHHH----HHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhcc---------------------------------
Confidence 1111 2222222222 4689999999999998888775421
Q ss_pred hhhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhc
Q 000756 791 DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGR 870 (1300)
Q Consensus 791 ~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GR 870 (1300)
.+.+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ ||++. ++.+|+||+||
T Consensus 392 ---g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~----~d~P~------s~~~yihRiGR 458 (518)
T PLN00206 392 ---GLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVII----FDMPN------TIKEYIHQIGR 458 (518)
T ss_pred ---CcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEE----eCCCC------CHHHHHHhccc
Confidence 134678999999999999999999999999999999999999999999998 88776 89999999999
Q ss_pred cCCCCCCCceEEEEEeCCCcHHHHHH
Q 000756 871 AGRPQYDSYGEGIIITGHSELRYYLS 896 (1300)
Q Consensus 871 AGR~g~d~~G~~iil~~~~~~~~y~~ 896 (1300)
|||.| ..|.++++++..+...+..
T Consensus 459 aGR~g--~~G~ai~f~~~~~~~~~~~ 482 (518)
T PLN00206 459 ASRMG--EKGTAIVFVNEEDRNLFPE 482 (518)
T ss_pred cccCC--CCeEEEEEEchhHHHHHHH
Confidence 99987 7899999998877655443
No 19
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=4.6e-42 Score=419.85 Aligned_cols=337 Identities=20% Similarity=0.317 Sum_probs=260.8
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcC
Q 000756 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (1300)
Q Consensus 481 ~Lp~~~~~~f--~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP 558 (1300)
.|++++...+ .||..|||+|.+|++.++.+ .|++++||||||||++|++|+++.+.... ...+++|++|
T Consensus 10 ~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g-~dvi~~a~TGsGKT~a~~lpil~~l~~~~--------~~~~~lil~P 80 (460)
T PRK11776 10 PLPPALLANLNELGYTEMTPIQAQSLPAILAG-KDVIAQAKTGSGKTAAFGLGLLQKLDVKR--------FRVQALVLCP 80 (460)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC-CCEEEECCCCCcHHHHHHHHHHHHhhhcc--------CCceEEEEeC
Confidence 3677777776 68999999999999999876 56999999999999999999999885431 2457999999
Q ss_pred cHHHHHHHHHHHhhhcccC-CcEEEEEeCCCccchhh---hccceEEEECcchHHHHHhhcCCCcccccccEEEEecccc
Q 000756 559 MKALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL 634 (1300)
Q Consensus 559 ~kaLa~q~~~~~~~~l~~~-gi~V~~ltGd~~~~~~~---~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~ 634 (1300)
|++||.|+.+.++...... ++++..++|+.+...+. ...++|+|+||++|..+.++.. ..++++++||+||||+
T Consensus 81 treLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~--~~l~~l~~lViDEad~ 158 (460)
T PRK11776 81 TRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGT--LDLDALNTLVLDEADR 158 (460)
T ss_pred CHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCC--ccHHHCCEEEEECHHH
Confidence 9999999999998876544 78999999998765432 3578999999999855554432 3578899999999999
Q ss_pred ccc-CChhHHHHHHHHHHHHHhhccCCeeEEEEcccCCCh-HHHHHHHhccccCceEEecCCcccccceeeEeeeecCch
Q 000756 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY-EDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKP 712 (1300)
Q Consensus 635 l~d-~rg~~le~iv~rl~~~~~~~~~~~riV~LSATlpn~-~dva~~L~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~ 712 (1300)
+.+ .+...++.++.. .+...|++++|||+|+. ..++..+...+ ..+.+........+.+.++.+....
T Consensus 159 ~l~~g~~~~l~~i~~~-------~~~~~q~ll~SAT~~~~~~~l~~~~~~~~--~~i~~~~~~~~~~i~~~~~~~~~~~- 228 (460)
T PRK11776 159 MLDMGFQDAIDAIIRQ-------APARRQTLLFSATYPEGIAAISQRFQRDP--VEVKVESTHDLPAIEQRFYEVSPDE- 228 (460)
T ss_pred HhCcCcHHHHHHHHHh-------CCcccEEEEEEecCcHHHHHHHHHhcCCC--EEEEECcCCCCCCeeEEEEEeCcHH-
Confidence 887 466666665544 35678999999999852 33343332222 1222333333344666666554332
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhh
Q 000756 713 LQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDL 792 (1300)
Q Consensus 713 ~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~l 792 (1300)
+...+.. +.......++||||++++.+..++..|...+
T Consensus 229 --k~~~l~~-----ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~----------------------------------- 266 (460)
T PRK11776 229 --RLPALQR-----LLLHHQPESCVVFCNTKKECQEVADALNAQG----------------------------------- 266 (460)
T ss_pred --HHHHHHH-----HHHhcCCCceEEEECCHHHHHHHHHHHHhCC-----------------------------------
Confidence 2322222 2233346789999999999999999987643
Q ss_pred hcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccC
Q 000756 793 LPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAG 872 (1300)
Q Consensus 793 l~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAG 872 (1300)
+.+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ |+.+. +..+|+||+||||
T Consensus 267 --~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~----~d~p~------~~~~yiqR~GRtG 334 (460)
T PRK11776 267 --FSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVIN----YELAR------DPEVHVHRIGRTG 334 (460)
T ss_pred --CcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEE----ecCCC------CHhHhhhhccccc
Confidence 35788999999999999999999999999999999999999999999998 77665 7889999999999
Q ss_pred CCCCCCceEEEEEeCCCcHHHH
Q 000756 873 RPQYDSYGEGIIITGHSELRYY 894 (1300)
Q Consensus 873 R~g~d~~G~~iil~~~~~~~~y 894 (1300)
|.| ..|.|+.++++.+...+
T Consensus 335 R~g--~~G~ai~l~~~~e~~~~ 354 (460)
T PRK11776 335 RAG--SKGLALSLVAPEEMQRA 354 (460)
T ss_pred CCC--CcceEEEEEchhHHHHH
Confidence 987 78999999988765443
No 20
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-42 Score=405.14 Aligned_cols=346 Identities=20% Similarity=0.285 Sum_probs=264.2
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcC
Q 000756 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (1300)
Q Consensus 481 ~Lp~~~~~~f--~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP 558 (1300)
.|++....++ .||..|+|||.+.++.++.+. +++..|.||||||++|++|++.++..+.... -..+++.+|+++|
T Consensus 97 ~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~Gr-D~v~iA~TGSGKTLay~lP~i~~l~~~~~~~--~~~~~P~vLVL~P 173 (519)
T KOG0331|consen 97 GLSEELMKALKEQGFEKPTPIQAQGWPIALSGR-DLVGIARTGSGKTLAYLLPAIVHLNNEQGKL--SRGDGPIVLVLAP 173 (519)
T ss_pred cccHHHHHHHHhcCCCCCchhhhcccceeccCC-ceEEEeccCCcchhhhhhHHHHHHHhccccc--cCCCCCeEEEEcC
Confidence 3445555555 799999999999999999885 5999999999999999999999998631111 1235789999999
Q ss_pred cHHHHHHHHHHHhhhcccCCcEEEEEeCCCccchhh---hccceEEEECcchH-HHHHhhcCCCcccccccEEEEecccc
Q 000756 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHL 634 (1300)
Q Consensus 559 ~kaLa~q~~~~~~~~l~~~gi~V~~ltGd~~~~~~~---~~~~~IIV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH~ 634 (1300)
||+||.|+...+.+....++++..+++|+.+...|. ..+.+|+|+||+++ |.+..... .++.+.++|+|||+.
T Consensus 174 TRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~---~l~~v~ylVLDEADr 250 (519)
T KOG0331|consen 174 TRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSL---NLSRVTYLVLDEADR 250 (519)
T ss_pred cHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCc---cccceeEEEeccHHh
Confidence 999999999999998888889999999999887764 34689999999997 66665544 678899999999999
Q ss_pred ccc-CChhHHHHHHHHHHHHHhhccCCeeEEEEcccCCC-hHHHH-HHHhccccCceEEecCC-cccccceeeEeeeecC
Q 000756 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVA-LFLRVNLEKGLFYFDNS-YRPVPLSQQYIGIQVK 710 (1300)
Q Consensus 635 l~d-~rg~~le~iv~rl~~~~~~~~~~~riV~LSATlpn-~~dva-~~L~~~~~~~~~~f~~~-~rpv~l~~~~~~~~~~ 710 (1300)
|.| ++.+.++.|+.++ .++..|+++.|||.|. ...++ .|+. ++..-.+..... .....+.|....+..
T Consensus 251 MldmGFe~qI~~Il~~i------~~~~rQtlm~saTwp~~v~~lA~~fl~-~~~~i~ig~~~~~~a~~~i~qive~~~~- 322 (519)
T KOG0331|consen 251 MLDMGFEPQIRKILSQI------PRPDRQTLMFSATWPKEVRQLAEDFLN-NPIQINVGNKKELKANHNIRQIVEVCDE- 322 (519)
T ss_pred hhccccHHHHHHHHHhc------CCCcccEEEEeeeccHHHHHHHHHHhc-CceEEEecchhhhhhhcchhhhhhhcCH-
Confidence 998 6888888887765 1334479999999985 33444 3454 432111111101 111222222222221
Q ss_pred chhHHHHHHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhh
Q 000756 711 KPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLK 790 (1300)
Q Consensus 711 ~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~ 790 (1300)
..+...+..+ ...+. ...++++||||.+++.|..++..|+..+
T Consensus 323 --~~K~~~l~~l-L~~~~-~~~~~KvIIFc~tkr~~~~l~~~l~~~~--------------------------------- 365 (519)
T KOG0331|consen 323 --TAKLRKLGKL-LEDIS-SDSEGKVIIFCETKRTCDELARNLRRKG--------------------------------- 365 (519)
T ss_pred --HHHHHHHHHH-HHHHh-ccCCCcEEEEecchhhHHHHHHHHHhcC---------------------------------
Confidence 1222222221 12222 2236799999999999999999987643
Q ss_pred hhhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhc
Q 000756 791 DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGR 870 (1300)
Q Consensus 791 ~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GR 870 (1300)
++...+||..++.+|..+++.|++|...|||||+++|+|+|+|+|++||+ ||+|. ++.+|+||+||
T Consensus 366 ----~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVIn----ydfP~------~vEdYVHRiGR 431 (519)
T KOG0331|consen 366 ----WPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVIN----YDFPN------NVEDYVHRIGR 431 (519)
T ss_pred ----cceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEe----CCCCC------CHHHHHhhcCc
Confidence 34567899999999999999999999999999999999999999999999 99987 89999999999
Q ss_pred cCCCCCCCceEEEEEeCCCcHHH
Q 000756 871 AGRPQYDSYGEGIIITGHSELRY 893 (1300)
Q Consensus 871 AGR~g~d~~G~~iil~~~~~~~~ 893 (1300)
+||.| ..|.++.+.+..+...
T Consensus 432 TGRa~--~~G~A~tfft~~~~~~ 452 (519)
T KOG0331|consen 432 TGRAG--KKGTAITFFTSDNAKL 452 (519)
T ss_pred cccCC--CCceEEEEEeHHHHHH
Confidence 99977 8999999998876544
No 21
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.6e-42 Score=415.43 Aligned_cols=346 Identities=15% Similarity=0.205 Sum_probs=254.6
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcC
Q 000756 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (1300)
Q Consensus 481 ~Lp~~~~~~f--~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP 558 (1300)
.|++++..++ .||..|+|+|.++++.++.+ ++++++||||||||++|++++++.+.......+ ....++++||++|
T Consensus 14 ~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g-~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~-~~~~~~~~lil~P 91 (423)
T PRK04837 14 ALHPQVVEALEKKGFHNCTPIQALALPLTLAG-RDVAGQAQTGTGKTMAFLTATFHYLLSHPAPED-RKVNQPRALIMAP 91 (423)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CcEEEECCCCchHHHHHHHHHHHHHHhcccccc-cccCCceEEEECC
Confidence 4677877777 78999999999999999876 569999999999999999999998875432111 1123578999999
Q ss_pred cHHHHHHHHHHHhhhcccCCcEEEEEeCCCccchhh---hccceEEEECcchHHHHHhhcCCCcccccccEEEEeccccc
Q 000756 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (1300)
Q Consensus 559 ~kaLa~q~~~~~~~~l~~~gi~V~~ltGd~~~~~~~---~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l 635 (1300)
|++||.|+++.+..+....|+++..++|+.....+. ..+++|+|+||+++..+.+... ..+..+++|||||||.+
T Consensus 92 treLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~--~~l~~v~~lViDEad~l 169 (423)
T PRK04837 92 TRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNH--INLGAIQVVVLDEADRM 169 (423)
T ss_pred cHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCC--cccccccEEEEecHHHH
Confidence 999999999999988888899999999987654432 2467999999999744444322 35788999999999998
Q ss_pred cc-CChhHHHHHHHHHHHHHhhccCCeeEEEEcccCCChH-HHH-HHHhccccCceEEecCCc-ccccceeeEeeeecCc
Q 000756 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYE-DVA-LFLRVNLEKGLFYFDNSY-RPVPLSQQYIGIQVKK 711 (1300)
Q Consensus 636 ~d-~rg~~le~iv~rl~~~~~~~~~~~riV~LSATlpn~~-dva-~~L~~~~~~~~~~f~~~~-rpv~l~~~~~~~~~~~ 711 (1300)
.+ .+...+..++.++ . .....+.+++|||++... .+. .++. ++ . ........ ....+.+.+....
T Consensus 170 ~~~~f~~~i~~i~~~~----~-~~~~~~~~l~SAT~~~~~~~~~~~~~~-~p-~-~i~v~~~~~~~~~i~~~~~~~~--- 238 (423)
T PRK04837 170 FDLGFIKDIRWLFRRM----P-PANQRLNMLFSATLSYRVRELAFEHMN-NP-E-YVEVEPEQKTGHRIKEELFYPS--- 238 (423)
T ss_pred hhcccHHHHHHHHHhC----C-CccceeEEEEeccCCHHHHHHHHHHCC-CC-E-EEEEcCCCcCCCceeEEEEeCC---
Confidence 86 4555555544432 1 123456789999997522 221 2222 11 1 11222211 1222333332211
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhh
Q 000756 712 PLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791 (1300)
Q Consensus 712 ~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ 791 (1300)
...+...+ .. +.......++||||+++..|..++..|...+
T Consensus 239 ~~~k~~~l----~~-ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g---------------------------------- 279 (423)
T PRK04837 239 NEEKMRLL----QT-LIEEEWPDRAIIFANTKHRCEEIWGHLAADG---------------------------------- 279 (423)
T ss_pred HHHHHHHH----HH-HHHhcCCCeEEEEECCHHHHHHHHHHHHhCC----------------------------------
Confidence 11222222 22 2222336799999999999999998886532
Q ss_pred hhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhcc
Q 000756 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRA 871 (1300)
Q Consensus 792 ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRA 871 (1300)
+.+.++||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ ||++. +..+|+||+|||
T Consensus 280 ---~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~----~d~P~------s~~~yiqR~GR~ 346 (423)
T PRK04837 280 ---HRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFN----YDLPD------DCEDYVHRIGRT 346 (423)
T ss_pred ---CcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEE----eCCCC------chhheEeccccc
Confidence 45788999999999999999999999999999999999999999999998 88776 889999999999
Q ss_pred CCCCCCCceEEEEEeCCCcHHHHH
Q 000756 872 GRPQYDSYGEGIIITGHSELRYYL 895 (1300)
Q Consensus 872 GR~g~d~~G~~iil~~~~~~~~y~ 895 (1300)
||.| ..|.++.|.++.+...+.
T Consensus 347 gR~G--~~G~ai~~~~~~~~~~~~ 368 (423)
T PRK04837 347 GRAG--ASGHSISLACEEYALNLP 368 (423)
T ss_pred cCCC--CCeeEEEEeCHHHHHHHH
Confidence 9988 889999999887654443
No 22
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=7e-42 Score=422.72 Aligned_cols=343 Identities=18% Similarity=0.256 Sum_probs=258.3
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcC
Q 000756 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (1300)
Q Consensus 481 ~Lp~~~~~~f--~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP 558 (1300)
.||+++...+ .||++|+|+|.++++.++.+ .++|++||||||||++|++|++..+....... ...++.+|||+|
T Consensus 136 ~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G-~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~---~~~gp~~LIL~P 211 (545)
T PTZ00110 136 SFPDYILKSLKNAGFTEPTPIQVQGWPIALSG-RDMIGIAETGSGKTLAFLLPAIVHINAQPLLR---YGDGPIVLVLAP 211 (545)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC-CCEEEEeCCCChHHHHHHHHHHHHHHhccccc---CCCCcEEEEECC
Confidence 5788888877 68999999999999999887 46999999999999999999998876532110 123578999999
Q ss_pred cHHHHHHHHHHHhhhcccCCcEEEEEeCCCccchhh---hccceEEEECcchH-HHHHhhcCCCcccccccEEEEecccc
Q 000756 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHL 634 (1300)
Q Consensus 559 ~kaLa~q~~~~~~~~l~~~gi~V~~ltGd~~~~~~~---~~~~~IIV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH~ 634 (1300)
|++||.|+.+.+.++....++++..++|+.....+. ...++|+|+||+++ +.+.+.. ..+..+++|||||||+
T Consensus 212 TreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~---~~l~~v~~lViDEAd~ 288 (545)
T PTZ00110 212 TRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNV---TNLRRVTYLVLDEADR 288 (545)
T ss_pred hHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCC---CChhhCcEEEeehHHh
Confidence 999999999999988777788999999987655432 34689999999997 4444332 3578899999999999
Q ss_pred ccc-CChhHHHHHHHHHHHHHhhccCCeeEEEEcccCCC-hHHHHHHHhccccCceEEecCCcc---cccceeeEeeeec
Q 000756 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNSYR---PVPLSQQYIGIQV 709 (1300)
Q Consensus 635 l~d-~rg~~le~iv~rl~~~~~~~~~~~riV~LSATlpn-~~dva~~L~~~~~~~~~~f~~~~r---pv~l~~~~~~~~~ 709 (1300)
+.+ .+.+.+..++.. ..+..|++++|||+|. ...++..+... ..+........ ...+.+.+..+..
T Consensus 289 mld~gf~~~i~~il~~-------~~~~~q~l~~SAT~p~~v~~l~~~l~~~--~~v~i~vg~~~l~~~~~i~q~~~~~~~ 359 (545)
T PTZ00110 289 MLDMGFEPQIRKIVSQ-------IRPDRQTLMWSATWPKEVQSLARDLCKE--EPVHVNVGSLDLTACHNIKQEVFVVEE 359 (545)
T ss_pred hhhcchHHHHHHHHHh-------CCCCCeEEEEEeCCCHHHHHHHHHHhcc--CCEEEEECCCccccCCCeeEEEEEEec
Confidence 987 455555555443 3567899999999985 23444444321 11211111111 1223444443333
Q ss_pred CchhHHHHHHHHHHHHHHHHHh-CCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchh
Q 000756 710 KKPLQRFQLMNDLCYEKVVAVA-GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSND 788 (1300)
Q Consensus 710 ~~~~~~~~~~~~~~~~~i~~~~-~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~ 788 (1300)
.. +...+..+ +.... .+.++||||++++.|..++..|...+
T Consensus 360 ~~---k~~~L~~l----l~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g------------------------------- 401 (545)
T PTZ00110 360 HE---KRGKLKML----LQRIMRDGDKILIFVETKKGADFLTKELRLDG------------------------------- 401 (545)
T ss_pred hh---HHHHHHHH----HHHhcccCCeEEEEecChHHHHHHHHHHHHcC-------------------------------
Confidence 22 12222221 22222 46799999999999999999886532
Q ss_pred hhhhhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhh
Q 000756 789 LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQML 868 (1300)
Q Consensus 789 L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~ 868 (1300)
+.+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ ||++. ++.+|+||+
T Consensus 402 ------~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~----~d~P~------s~~~yvqRi 465 (545)
T PTZ00110 402 ------WPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVIN----FDFPN------QIEDYVHRI 465 (545)
T ss_pred ------CcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEE----eCCCC------CHHHHHHHh
Confidence 23567899999999999999999999999999999999999999999998 88876 899999999
Q ss_pred hccCCCCCCCceEEEEEeCCCcHHHHH
Q 000756 869 GRAGRPQYDSYGEGIIITGHSELRYYL 895 (1300)
Q Consensus 869 GRAGR~g~d~~G~~iil~~~~~~~~y~ 895 (1300)
|||||.| ..|.++.+++..+.....
T Consensus 466 GRtGR~G--~~G~ai~~~~~~~~~~~~ 490 (545)
T PTZ00110 466 GRTGRAG--AKGASYTFLTPDKYRLAR 490 (545)
T ss_pred cccccCC--CCceEEEEECcchHHHHH
Confidence 9999987 789999999987755433
No 23
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=3.2e-41 Score=409.81 Aligned_cols=342 Identities=23% Similarity=0.289 Sum_probs=259.8
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcC
Q 000756 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (1300)
Q Consensus 481 ~Lp~~~~~~f--~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP 558 (1300)
.|++.+...+ .||..|+++|.++++.++++ .+++++||||+|||++|++++++.+....... ....++||++|
T Consensus 7 ~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g-~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~----~~~~~~lil~P 81 (434)
T PRK11192 7 ELDESLLEALQDKGYTRPTAIQAEAIPPALDG-RDVLGSAPTGTGKTAAFLLPALQHLLDFPRRK----SGPPRILILTP 81 (434)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCChHHHHHHHHHHHHHhhccccC----CCCceEEEECC
Confidence 4677777777 78999999999999999976 56999999999999999999999887542211 12468999999
Q ss_pred cHHHHHHHHHHHhhhcccCCcEEEEEeCCCccchhh---hccceEEEECcchHHHHHhhcCCCcccccccEEEEeccccc
Q 000756 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (1300)
Q Consensus 559 ~kaLa~q~~~~~~~~l~~~gi~V~~ltGd~~~~~~~---~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l 635 (1300)
|++||.|+++.+..+....++++..++|+.....+. ..+++|+|+||+++..+..... ..++.+++|||||||.+
T Consensus 82 t~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~--~~~~~v~~lViDEah~~ 159 (434)
T PRK11192 82 TRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEEN--FDCRAVETLILDEADRM 159 (434)
T ss_pred cHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC--cCcccCCEEEEECHHHH
Confidence 999999999999998888899999999988765442 3467999999999743433322 34678999999999999
Q ss_pred cc-CChhHHHHHHHHHHHHHhhccCCeeEEEEcccCCC--hHHHHHHHhccccCceEEecCCcccc-cceeeEeeeecCc
Q 000756 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN--YEDVALFLRVNLEKGLFYFDNSYRPV-PLSQQYIGIQVKK 711 (1300)
Q Consensus 636 ~d-~rg~~le~iv~rl~~~~~~~~~~~riV~LSATlpn--~~dva~~L~~~~~~~~~~f~~~~rpv-~l~~~~~~~~~~~ 711 (1300)
.+ .++..++.+... .+...|++++|||++. ..++..++..++. .+...+..+.. .+.+.+.....
T Consensus 160 l~~~~~~~~~~i~~~-------~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~i~~~~~~~~~-- 228 (434)
T PRK11192 160 LDMGFAQDIETIAAE-------TRWRKQTLLFSATLEGDAVQDFAERLLNDPV--EVEAEPSRRERKKIHQWYYRADD-- 228 (434)
T ss_pred hCCCcHHHHHHHHHh-------CccccEEEEEEeecCHHHHHHHHHHHccCCE--EEEecCCcccccCceEEEEEeCC--
Confidence 87 466666655443 3456789999999974 4566666654431 12222222211 23333332221
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhh
Q 000756 712 PLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791 (1300)
Q Consensus 712 ~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ 791 (1300)
...+... +. .+.......++||||+++..+..++..|...+
T Consensus 229 ~~~k~~~----l~-~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~---------------------------------- 269 (434)
T PRK11192 229 LEHKTAL----LC-HLLKQPEVTRSIVFVRTRERVHELAGWLRKAG---------------------------------- 269 (434)
T ss_pred HHHHHHH----HH-HHHhcCCCCeEEEEeCChHHHHHHHHHHHhCC----------------------------------
Confidence 1112222 22 22333346799999999999999999887532
Q ss_pred hhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhcc
Q 000756 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRA 871 (1300)
Q Consensus 792 ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRA 871 (1300)
..+.++||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ ||++. |...|+||+|||
T Consensus 270 ---~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~----~d~p~------s~~~yiqr~GR~ 336 (434)
T PRK11192 270 ---INCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVIN----FDMPR------SADTYLHRIGRT 336 (434)
T ss_pred ---CCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEE----ECCCC------CHHHHhhccccc
Confidence 34788999999999999999999999999999999999999999999998 88765 899999999999
Q ss_pred CCCCCCCceEEEEEeCCCcHHHH
Q 000756 872 GRPQYDSYGEGIIITGHSELRYY 894 (1300)
Q Consensus 872 GR~g~d~~G~~iil~~~~~~~~y 894 (1300)
||.| ..|.++++.+..+...+
T Consensus 337 gR~g--~~g~ai~l~~~~d~~~~ 357 (434)
T PRK11192 337 GRAG--RKGTAISLVEAHDHLLL 357 (434)
T ss_pred ccCC--CCceEEEEecHHHHHHH
Confidence 9987 78999999887665443
No 24
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.8e-41 Score=418.69 Aligned_cols=344 Identities=15% Similarity=0.206 Sum_probs=255.2
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCc
Q 000756 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (1300)
Q Consensus 482 Lp~~~~~~f--~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~ 559 (1300)
|++++...+ .||..|+|||.++|+.++.+ .|++++||||||||++|++++++.+....... ......+++|||+||
T Consensus 16 l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G-~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~-~~~~~~~raLIl~PT 93 (572)
T PRK04537 16 LHPALLAGLESAGFTRCTPIQALTLPVALPG-GDVAGQAQTGTGKTLAFLVAVMNRLLSRPALA-DRKPEDPRALILAPT 93 (572)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEEcCCCCcHHHHHHHHHHHHHHhccccc-ccccCCceEEEEeCc
Confidence 677777777 78999999999999999877 56999999999999999999999886532100 001124789999999
Q ss_pred HHHHHHHHHHHhhhcccCCcEEEEEeCCCccchhh---hccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccc
Q 000756 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (1300)
Q Consensus 560 kaLa~q~~~~~~~~l~~~gi~V~~ltGd~~~~~~~---~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~ 636 (1300)
++||.|+++.+.++....++++..++|+.....+. ...++|||+||++|..+.+... ...+..+++|||||||.+.
T Consensus 94 reLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~-~~~l~~v~~lViDEAh~ll 172 (572)
T PRK04537 94 RELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHK-VVSLHACEICVLDEADRMF 172 (572)
T ss_pred HHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhcc-ccchhheeeeEecCHHHHh
Confidence 99999999999998888899999999988765432 2467999999999744444332 1346789999999999988
Q ss_pred c-CChhHHHHHHHHHHHHHhhccCCeeEEEEcccCCCh-HH-HHHHHhccccCceEEecCCcccccceeeEeeeecCchh
Q 000756 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY-ED-VALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713 (1300)
Q Consensus 637 d-~rg~~le~iv~rl~~~~~~~~~~~riV~LSATlpn~-~d-va~~L~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~ 713 (1300)
+ .+...++.++.++. .....|++++|||+++. .. ...++.. + ..+...........+.+.++.... .
T Consensus 173 d~gf~~~i~~il~~lp-----~~~~~q~ll~SATl~~~v~~l~~~~l~~-p-~~i~v~~~~~~~~~i~q~~~~~~~---~ 242 (572)
T PRK04537 173 DLGFIKDIRFLLRRMP-----ERGTRQTLLFSATLSHRVLELAYEHMNE-P-EKLVVETETITAARVRQRIYFPAD---E 242 (572)
T ss_pred hcchHHHHHHHHHhcc-----cccCceEEEEeCCccHHHHHHHHHHhcC-C-cEEEeccccccccceeEEEEecCH---H
Confidence 7 46666665555431 12367899999999862 12 2233322 1 112221222222334444433221 1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhh
Q 000756 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793 (1300)
Q Consensus 714 ~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll 793 (1300)
.+...+. . +.....+.++||||+|+..|+.++..|...+
T Consensus 243 ~k~~~L~----~-ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g------------------------------------ 281 (572)
T PRK04537 243 EKQTLLL----G-LLSRSEGARTMVFVNTKAFVERVARTLERHG------------------------------------ 281 (572)
T ss_pred HHHHHHH----H-HHhcccCCcEEEEeCCHHHHHHHHHHHHHcC------------------------------------
Confidence 1222211 1 2223346799999999999999999886542
Q ss_pred cCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCC
Q 000756 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (1300)
Q Consensus 794 ~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR 873 (1300)
+.+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ ||.+. ++.+|+||+|||||
T Consensus 282 -~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VIn----yd~P~------s~~~yvqRiGRaGR 350 (572)
T PRK04537 282 -YRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYN----YDLPF------DAEDYVHRIGRTAR 350 (572)
T ss_pred -CCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEE----cCCCC------CHHHHhhhhccccc
Confidence 34789999999999999999999999999999999999999999999998 77664 89999999999999
Q ss_pred CCCCCceEEEEEeCCCcHH
Q 000756 874 PQYDSYGEGIIITGHSELR 892 (1300)
Q Consensus 874 ~g~d~~G~~iil~~~~~~~ 892 (1300)
.| ..|.|++|+...+..
T Consensus 351 ~G--~~G~ai~~~~~~~~~ 367 (572)
T PRK04537 351 LG--EEGDAISFACERYAM 367 (572)
T ss_pred CC--CCceEEEEecHHHHH
Confidence 88 789999998875543
No 25
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1e-42 Score=404.77 Aligned_cols=392 Identities=27% Similarity=0.399 Sum_probs=302.3
Q ss_pred CCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhc
Q 000756 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1300)
Q Consensus 495 ~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l 574 (1300)
+|.|+|+.++.+ +..++.+||+|.|.+|||.+|..+|...+.. +.+|||..|.|||.+|.++++..-|
T Consensus 129 ~LDpFQ~~aI~C-idr~eSVLVSAHTSAGKTVVAeYAIA~sLr~-----------kQRVIYTSPIKALSNQKYREl~~EF 196 (1041)
T KOG0948|consen 129 TLDPFQSTAIKC-IDRGESVLVSAHTSAGKTVVAEYAIAMSLRE-----------KQRVIYTSPIKALSNQKYRELLEEF 196 (1041)
T ss_pred ccCchHhhhhhh-hcCCceEEEEeecCCCcchHHHHHHHHHHHh-----------cCeEEeeChhhhhcchhHHHHHHHh
Confidence 789999999986 4667899999999999999999999999876 3589999999999999999998877
Q ss_pred ccCCcEEEEEeCCCccchhhhccceEEEECcchHHHHHhhcCCCcccccccEEEEeccccccc-CChhHHHHHHHHHHHH
Q 000756 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQ 653 (1300)
Q Consensus 575 ~~~gi~V~~ltGd~~~~~~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~iv~rl~~~ 653 (1300)
+ .|+..|||.+++. .+..+|+|.|-|..++-+.. ..+..|.+||+||+|.|.| +||.++|..+--
T Consensus 197 ~----DVGLMTGDVTInP----~ASCLVMTTEILRsMLYRGS--EvmrEVaWVIFDEIHYMRDkERGVVWEETIIl---- 262 (1041)
T KOG0948|consen 197 K----DVGLMTGDVTINP----DASCLVMTTEILRSMLYRGS--EVMREVAWVIFDEIHYMRDKERGVVWEETIIL---- 262 (1041)
T ss_pred c----ccceeecceeeCC----CCceeeeHHHHHHHHHhccc--hHhheeeeEEeeeehhccccccceeeeeeEEe----
Confidence 6 5788999999887 46788999998754444443 4788999999999999999 799999975542
Q ss_pred HhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCcccccceeeEee---------eecCchh--HHH-HHHHH
Q 000756 654 IETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIG---------IQVKKPL--QRF-QLMND 721 (1300)
Q Consensus 654 ~~~~~~~~riV~LSATlpn~~dva~~L~~~~~~~~~~f~~~~rpv~l~~~~~~---------~~~~~~~--~~~-~~~~~ 721 (1300)
.+.++|.|+||||+||+..+|+|+..-....+...-..|||.||++++.. +.++... ..+ .+|..
T Consensus 263 ---lP~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~ 339 (1041)
T KOG0948|consen 263 ---LPDNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSV 339 (1041)
T ss_pred ---ccccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHH
Confidence 48899999999999999999999986556667778889999999987442 2222111 111 11110
Q ss_pred ------------------------------HHHHHHHHHhC--CCeEEEEEcChHHHHHHHHHHHHHhhccccccccccc
Q 000756 722 ------------------------------LCYEKVVAVAG--KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKE 769 (1300)
Q Consensus 722 ------------------------------~~~~~i~~~~~--~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~ 769 (1300)
-+|..+..... ..|+|||+-|+++|+..|..+..+.+..+.-..
T Consensus 340 l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~---- 415 (1041)
T KOG0948|consen 340 LRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKE---- 415 (1041)
T ss_pred hhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHH----
Confidence 12333322222 569999999999999999988776544322111
Q ss_pred CchhHHHHHhhhhccc--c------hhhhhhhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEE
Q 000756 770 DSVSREILQSHTDMVK--S------NDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTV 841 (1300)
Q Consensus 770 ~~~~~~~l~~~~~~~~--~------~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~v 841 (1300)
.-.++......... | ..+--+|..|||+||+||-+--++.|+-+|..|.++||+||-|++.|+|.||.+|
T Consensus 416 --~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTV 493 (1041)
T KOG0948|consen 416 --LVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTV 493 (1041)
T ss_pred --HHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeE
Confidence 11122222222211 1 2344567789999999999999999999999999999999999999999999999
Q ss_pred EEecceeccCCCCCcccCCHHHHHHhhhccCCCCCCCceEEEEEeCCCcH-HHHHHhh-cCCCCcccchhHhHHHHHHHH
Q 000756 842 IIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL-RYYLSLM-NQQLPIESQFVSKLADQLNAE 919 (1300)
Q Consensus 842 VI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d~~G~~iil~~~~~~-~~y~~ll-~~~lPiES~l~~~l~d~lnaE 919 (1300)
|+.....||+.. +.|+|.-+|+||.|||||.|.|..|.+|++....-. +.-+.++ .+.-|+-|.|+-.....||--
T Consensus 494 vFT~~rKfDG~~--fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~kG~aD~LnSaFhLtYnMiLNLl 571 (1041)
T KOG0948|consen 494 VFTAVRKFDGKK--FRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDMLKGSADPLNSAFHLTYNMILNLL 571 (1041)
T ss_pred EEeeccccCCcc--eeeecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHhcCCCcchhhhhhhHHHHHHHHH
Confidence 999888999876 567899999999999999999999999999987643 3444444 456788999887655556644
Q ss_pred HHhc
Q 000756 920 IVLG 923 (1300)
Q Consensus 920 I~~g 923 (1300)
-+.|
T Consensus 572 RvEe 575 (1041)
T KOG0948|consen 572 RVEE 575 (1041)
T ss_pred HHcc
Confidence 3333
No 26
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=8.9e-41 Score=402.46 Aligned_cols=340 Identities=19% Similarity=0.305 Sum_probs=249.8
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCc
Q 000756 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (1300)
Q Consensus 482 Lp~~~~~~f--~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~ 559 (1300)
|++++...+ .||..|+|+|.++++.++++. +++++||||||||++|++++++.+... ..+.++||++|+
T Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~-d~ii~apTGsGKT~~~~l~~l~~~~~~--------~~~~~~lil~Pt 105 (401)
T PTZ00424 35 LNEDLLRGIYSYGFEKPSAIQQRGIKPILDGY-DTIGQAQSGTGKTATFVIAALQLIDYD--------LNACQALILAPT 105 (401)
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCC-CEEEECCCCChHHHHHHHHHHHHhcCC--------CCCceEEEECCC
Confidence 555555554 589999999999999998874 589999999999999999999887532 125689999999
Q ss_pred HHHHHHHHHHHhhhcccCCcEEEEEeCCCccchhh---hccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccc
Q 000756 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (1300)
Q Consensus 560 kaLa~q~~~~~~~~l~~~gi~V~~ltGd~~~~~~~---~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~ 636 (1300)
++|+.|+.+.+.......++.+..++|+....... ..+++|+|+||+++..+.++.. ..++++++|||||+|++.
T Consensus 106 ~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~--~~l~~i~lvViDEah~~~ 183 (401)
T PTZ00424 106 RELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRH--LRVDDLKLFILDEADEML 183 (401)
T ss_pred HHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCC--cccccccEEEEecHHHHH
Confidence 99999999999887777788888888887643321 2457999999999644443322 357889999999999987
Q ss_pred c-CChhHHHHHHHHHHHHHhhccCCeeEEEEcccCCCh-HHH-HHHHhccccCceEEecCCcccccceeeEeeeecCchh
Q 000756 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY-EDV-ALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713 (1300)
Q Consensus 637 d-~rg~~le~iv~rl~~~~~~~~~~~riV~LSATlpn~-~dv-a~~L~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~ 713 (1300)
+ .++..+..++ ...+..+|+|++|||+|+. .++ ..|+.. + ..+...........+.+.+..+... .
T Consensus 184 ~~~~~~~~~~i~-------~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~--~ 252 (401)
T PTZ00424 184 SRGFKGQIYDVF-------KKLPPDVQVALFSATMPNEILELTTKFMRD-P-KRILVKKDELTLEGIRQFYVAVEKE--E 252 (401)
T ss_pred hcchHHHHHHHH-------hhCCCCcEEEEEEecCCHHHHHHHHHHcCC-C-EEEEeCCCCcccCCceEEEEecChH--H
Confidence 6 3433333332 2346789999999999872 122 223321 1 1111111111222333333333211 1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhh
Q 000756 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793 (1300)
Q Consensus 714 ~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll 793 (1300)
.....+. .+.......++||||++++.+..++..|....
T Consensus 253 ~~~~~l~-----~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~------------------------------------ 291 (401)
T PTZ00424 253 WKFDTLC-----DLYETLTITQAIIYCNTRRKVDYLTKKMHERD------------------------------------ 291 (401)
T ss_pred HHHHHHH-----HHHHhcCCCeEEEEecCcHHHHHHHHHHHHCC------------------------------------
Confidence 1111111 12223345789999999999999988776431
Q ss_pred cCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCC
Q 000756 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (1300)
Q Consensus 794 ~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR 873 (1300)
.++..+||+|+..+|..+++.|++|.++|||||+++++|||+|++++||+ |+++. |..+|+||+|||||
T Consensus 292 -~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~----~~~p~------s~~~y~qr~GRagR 360 (401)
T PTZ00424 292 -FTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVIN----YDLPA------SPENYIHRIGRSGR 360 (401)
T ss_pred -CcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEE----ECCCC------CHHHEeeccccccc
Confidence 45889999999999999999999999999999999999999999999998 87765 89999999999999
Q ss_pred CCCCCceEEEEEeCCCcHHHHHHh
Q 000756 874 PQYDSYGEGIIITGHSELRYYLSL 897 (1300)
Q Consensus 874 ~g~d~~G~~iil~~~~~~~~y~~l 897 (1300)
.| ..|.|+++++..+..++..+
T Consensus 361 ~g--~~G~~i~l~~~~~~~~~~~~ 382 (401)
T PTZ00424 361 FG--RKGVAINFVTPDDIEQLKEI 382 (401)
T ss_pred CC--CCceEEEEEcHHHHHHHHHH
Confidence 87 78999999998887766543
No 27
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=3.1e-40 Score=413.29 Aligned_cols=327 Identities=20% Similarity=0.257 Sum_probs=244.5
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHH
Q 000756 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1300)
Q Consensus 491 ~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~ 570 (1300)
.|+..|+|+|.++|+.++.+ .++|+++|||+|||+||++|++.. +..+|||+|+++|+.+++..+
T Consensus 456 FG~~sFRp~Q~eaI~aiL~G-rDVLVimPTGSGKSLcYQLPAL~~--------------~GiTLVISPLiSLmqDQV~~L 520 (1195)
T PLN03137 456 FGNHSFRPNQREIINATMSG-YDVFVLMPTGGGKSLTYQLPALIC--------------PGITLVISPLVSLIQDQIMNL 520 (1195)
T ss_pred cCCCCCCHHHHHHHHHHHcC-CCEEEEcCCCccHHHHHHHHHHHc--------------CCcEEEEeCHHHHHHHHHHHH
Confidence 48899999999999999887 569999999999999999999853 125999999999999887776
Q ss_pred hhhcccCCcEEEEEeCCCccchhh---------hccceEEEECcchH---HHHHhhcCCCcccccccEEEEeccccccc-
Q 000756 571 SNRLQMYDVKVRELSGDQTLTRQQ---------IEETQIIVTTPEKW---DIITRKSGDRTYTQLVKLLIIDEIHLLHD- 637 (1300)
Q Consensus 571 ~~~l~~~gi~V~~ltGd~~~~~~~---------~~~~~IIV~TPekl---d~l~r~~~~~~~l~~v~liIiDEaH~l~d- 637 (1300)
.. .|+.+..+.|+.....+. ....+|+|+|||++ +.+.+..........+.+|||||||++.+
T Consensus 521 ~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqW 596 (1195)
T PLN03137 521 LQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQW 596 (1195)
T ss_pred Hh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhc
Confidence 54 488999999887654331 14679999999997 34444432222334589999999999875
Q ss_pred --CChhHHHHHHHHHHHHHhhccCCeeEEEEcccCCC--hHHHHHHHhccccCceEEecCCcccccceeeEeeeecCchh
Q 000756 638 --NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN--YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713 (1300)
Q Consensus 638 --~rg~~le~iv~rl~~~~~~~~~~~riV~LSATlpn--~~dva~~L~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~ 713 (1300)
++++.+..+ ..+ ....+.+++++||||++. .+++...|+.. . ...|..++....+...+ +... .
T Consensus 597 GhDFRpdYr~L-~~L----r~~fp~vPilALTATAT~~V~eDI~~~L~l~--~-~~vfr~Sf~RpNL~y~V--v~k~--k 664 (1195)
T PLN03137 597 GHDFRPDYQGL-GIL----KQKFPNIPVLALTATATASVKEDVVQALGLV--N-CVVFRQSFNRPNLWYSV--VPKT--K 664 (1195)
T ss_pred ccchHHHHHHH-HHH----HHhCCCCCeEEEEecCCHHHHHHHHHHcCCC--C-cEEeecccCccceEEEE--eccc--h
Confidence 345555432 111 123457889999999875 35677777643 2 33444444333332222 2211 1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhh
Q 000756 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793 (1300)
Q Consensus 714 ~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll 793 (1300)
..... +...+.....+.++||||.||++|+.++..|...+
T Consensus 665 k~le~----L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~G------------------------------------ 704 (1195)
T PLN03137 665 KCLED----IDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFG------------------------------------ 704 (1195)
T ss_pred hHHHH----HHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCC------------------------------------
Confidence 11111 22223333335689999999999999999887643
Q ss_pred cCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCC
Q 000756 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (1300)
Q Consensus 794 ~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR 873 (1300)
+.+++|||||++.+|..+++.|..|.++|||||++++||||+|+|++||+ |+.++ |+.+|+||+|||||
T Consensus 705 -ika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIH----ydlPk------SiEsYyQriGRAGR 773 (1195)
T PLN03137 705 -HKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIH----HSLPK------SIEGYHQECGRAGR 773 (1195)
T ss_pred -CCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEE----cCCCC------CHHHHHhhhcccCC
Confidence 34788999999999999999999999999999999999999999999999 99887 89999999999999
Q ss_pred CCCCCceEEEEEeCCCcHHHHHHhhcCC
Q 000756 874 PQYDSYGEGIIITGHSELRYYLSLMNQQ 901 (1300)
Q Consensus 874 ~g~d~~G~~iil~~~~~~~~y~~ll~~~ 901 (1300)
.| ..|.|++++...+...+..++.+.
T Consensus 774 DG--~~g~cILlys~~D~~~~~~lI~~~ 799 (1195)
T PLN03137 774 DG--QRSSCVLYYSYSDYIRVKHMISQG 799 (1195)
T ss_pred CC--CCceEEEEecHHHHHHHHHHHhcc
Confidence 98 789999999988877777776543
No 28
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.8e-40 Score=406.83 Aligned_cols=343 Identities=19% Similarity=0.301 Sum_probs=255.0
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcC
Q 000756 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (1300)
Q Consensus 481 ~Lp~~~~~~f--~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP 558 (1300)
.|++.+..++ .||..|+++|.++++.++.+ +|++++||||||||++|++++++.+......... .....++|||+|
T Consensus 93 ~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G-~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~-~~~~~~aLil~P 170 (475)
T PRK01297 93 NLAPELMHAIHDLGFPYCTPIQAQVLGYTLAG-HDAIGRAQTGTGKTAAFLISIINQLLQTPPPKER-YMGEPRALIIAP 170 (475)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCChHHHHHHHHHHHHHHhcCccccc-ccCCceEEEEeC
Confidence 4788888877 78999999999999998877 5699999999999999999999998764321110 012468999999
Q ss_pred cHHHHHHHHHHHhhhcccCCcEEEEEeCCCccchhh----hccceEEEECcchHHHHHhhcCCCcccccccEEEEecccc
Q 000756 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ----IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL 634 (1300)
Q Consensus 559 ~kaLa~q~~~~~~~~l~~~gi~V~~ltGd~~~~~~~----~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~ 634 (1300)
|++||.|+++.++.+....++++..++|+.....+. ...++|+|+||+++..+..++. .+++++++|||||+|.
T Consensus 171 treLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~--~~l~~l~~lViDEah~ 248 (475)
T PRK01297 171 TRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGE--VHLDMVEVMVLDEADR 248 (475)
T ss_pred cHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCC--cccccCceEEechHHH
Confidence 999999999999998888899999999987654432 2468999999999755555443 4688999999999999
Q ss_pred ccc-CChhHHHHHHHHHHHHHhhccCCeeEEEEcccCCC-hHHHHHHHhccccCceEEecCCc-ccccceeeEeeeecCc
Q 000756 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNSY-RPVPLSQQYIGIQVKK 711 (1300)
Q Consensus 635 l~d-~rg~~le~iv~rl~~~~~~~~~~~riV~LSATlpn-~~dva~~L~~~~~~~~~~f~~~~-rpv~l~~~~~~~~~~~ 711 (1300)
+.+ .+.+.+..++..+ . .....+++++|||+++ ...++..+..++ ..+.+.... ....+.+++..+....
T Consensus 249 l~~~~~~~~l~~i~~~~----~-~~~~~q~i~~SAT~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~ 321 (475)
T PRK01297 249 MLDMGFIPQVRQIIRQT----P-RKEERQTLLFSATFTDDVMNLAKQWTTDP--AIVEIEPENVASDTVEQHVYAVAGSD 321 (475)
T ss_pred HHhcccHHHHHHHHHhC----C-CCCCceEEEEEeecCHHHHHHHHHhccCC--EEEEeccCcCCCCcccEEEEEecchh
Confidence 876 3444444443322 1 1235689999999874 334444333322 122222221 1223344444433321
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhh
Q 000756 712 PLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791 (1300)
Q Consensus 712 ~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ 791 (1300)
+... ++..+ ......++||||+++..++.++..|...+
T Consensus 322 ---k~~~----l~~ll-~~~~~~~~IVF~~s~~~~~~l~~~L~~~~---------------------------------- 359 (475)
T PRK01297 322 ---KYKL----LYNLV-TQNPWERVMVFANRKDEVRRIEERLVKDG---------------------------------- 359 (475)
T ss_pred ---HHHH----HHHHH-HhcCCCeEEEEeCCHHHHHHHHHHHHHcC----------------------------------
Confidence 1222 22222 22335699999999999999998875432
Q ss_pred hhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhcc
Q 000756 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRA 871 (1300)
Q Consensus 792 ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRA 871 (1300)
+.+..+||+|+..+|..+++.|++|.++|||||+++++|||+|++++||+ |+.+. |+.+|+||+|||
T Consensus 360 ---~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~----~~~P~------s~~~y~Qr~GRa 426 (475)
T PRK01297 360 ---INAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVIN----FTLPE------DPDDYVHRIGRT 426 (475)
T ss_pred ---CCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEE----eCCCC------CHHHHHHhhCcc
Confidence 34678899999999999999999999999999999999999999999998 77765 899999999999
Q ss_pred CCCCCCCceEEEEEeCCCcH
Q 000756 872 GRPQYDSYGEGIIITGHSEL 891 (1300)
Q Consensus 872 GR~g~d~~G~~iil~~~~~~ 891 (1300)
||.| ..|.++++.+.++.
T Consensus 427 GR~g--~~g~~i~~~~~~d~ 444 (475)
T PRK01297 427 GRAG--ASGVSISFAGEDDA 444 (475)
T ss_pred CCCC--CCceEEEEecHHHH
Confidence 9988 78999999887643
No 29
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=9.6e-41 Score=435.40 Aligned_cols=400 Identities=21% Similarity=0.275 Sum_probs=265.2
Q ss_pred EEccCCCccHHHHHHHHHHHHHhccCCC--CCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcc------------cCCcEE
Q 000756 516 LCAPTGAGKTNVAVLTILQQLALNRNDD--GSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ------------MYDVKV 581 (1300)
Q Consensus 516 i~APTGsGKT~va~l~il~~l~~~~~~~--g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~------------~~gi~V 581 (1300)
|+||||||||++|+++++..+....... +.-..++.++|||+|+|+|+.|+.++++..+. ..+++|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5899999999999999998887542110 00012357999999999999999999875221 247899
Q ss_pred EEEeCCCccchhh--h-ccceEEEECcchHHHHHhhcCCCcccccccEEEEeccccccc-CChhHHHHHHHHHHHHHhhc
Q 000756 582 RELSGDQTLTRQQ--I-EETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETT 657 (1300)
Q Consensus 582 ~~ltGd~~~~~~~--~-~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~iv~rl~~~~~~~ 657 (1300)
+..+||.+...+. . ..++|||||||+|..+..+. ....++++++|||||+|.+.+ .||..++.++.|+.+. .
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk-~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l---~ 156 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSR-ARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDAL---L 156 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhh-hhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHh---C
Confidence 9999999876643 2 46899999999997665432 235789999999999999987 5999999999998764 3
Q ss_pred cCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCcccccceeeEeeeecCch-------------hHHHHHHHHHHH
Q 000756 658 KEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKP-------------LQRFQLMNDLCY 724 (1300)
Q Consensus 658 ~~~~riV~LSATlpn~~dva~~L~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~-------------~~~~~~~~~~~~ 724 (1300)
+.+.|+||||||++|.+++++||+......++ ..+..++.++...+. ...... ..+...+...++
T Consensus 157 ~~~~QrIgLSATI~n~eevA~~L~g~~pv~Iv-~~~~~r~~~l~v~vp-~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~ 234 (1490)
T PRK09751 157 HTSAQRIGLSATVRSASDVAAFLGGDRPVTVV-NPPAMRHPQIRIVVP-VANMDDVSSVASGTGEDSHAGREGSIWPYIE 234 (1490)
T ss_pred CCCCeEEEEEeeCCCHHHHHHHhcCCCCEEEE-CCCCCcccceEEEEe-cCchhhccccccccccccchhhhhhhhHHHH
Confidence 46789999999999999999999864222222 234455555543221 111000 000111111222
Q ss_pred HHHHHH-hCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhh---hhhcCCeEEe
Q 000756 725 EKVVAV-AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLK---DLLPYGFAIH 800 (1300)
Q Consensus 725 ~~i~~~-~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~---~ll~~gv~~~ 800 (1300)
..+... ....++|||||||+.|+.++..|.+...... ........ .........+.... ..-...+.+|
T Consensus 235 ~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ia~~H 307 (1490)
T PRK09751 235 TGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARL------QRSPSIAV-DAAHFESTSGATSNRVQSSDVFIARSH 307 (1490)
T ss_pred HHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhc------cccccccc-hhhhhhhccccchhccccccceeeeec
Confidence 222222 2367999999999999999999977532100 00000000 00000000111111 1112347899
Q ss_pred cCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCCCCCCce
Q 000756 801 HAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYG 880 (1300)
Q Consensus 801 Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d~~G 880 (1300)
||+|++++|..+++.|++|.++|||||+++++|||+|++++||+ |+.+. |+.+|+||+|||||. .+..+
T Consensus 308 HGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq----~gsP~------sVas~LQRiGRAGR~-~gg~s 376 (1490)
T PRK09751 308 HGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQ----VATPL------SVASGLQRIGRAGHQ-VGGVS 376 (1490)
T ss_pred cccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEE----eCCCC------CHHHHHHHhCCCCCC-CCCcc
Confidence 99999999999999999999999999999999999999999998 66554 899999999999996 45677
Q ss_pred EEEEEeCCCcHHHH------HHhhcCCC-Ccc--cchhHhHHHHHHHHHHhccccCHHHHHHHHHhhHHH
Q 000756 881 EGIIITGHSELRYY------LSLMNQQL-PIE--SQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLY 941 (1300)
Q Consensus 881 ~~iil~~~~~~~~y------~~ll~~~l-PiE--S~l~~~l~d~lnaEI~~g~i~~~~d~~~wL~~T~ly 941 (1300)
.++++..+.. +.. ..++...+ |+. ..-...|..++.+-++.+.+. .++..+.+..+|-|
T Consensus 377 ~gli~p~~r~-dlle~~~~ve~~l~g~iE~~~~p~nplDVLaqqiva~a~~~~~~-~d~l~~~vrra~pf 444 (1490)
T PRK09751 377 KGLFFPRTRR-DLVDSAVIVECMFAGRLENLTPPHNPLDVLAQQTVAAAAMDALQ-VDEWYSRVRRAAPW 444 (1490)
T ss_pred EEEEEeCcHH-HHHhhHHHHHHHhcCCCCccCCCCChHHHHHHHHHHHHhcCCCC-HHHHHHHhhccCCc
Confidence 8886665432 211 12232211 211 122235677777776655433 55665555544443
No 30
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=3e-40 Score=411.46 Aligned_cols=337 Identities=21% Similarity=0.284 Sum_probs=255.4
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCc
Q 000756 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (1300)
Q Consensus 482 Lp~~~~~~f--~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~ 559 (1300)
|++.+..++ .||.+|+|+|.++++.++.+ .++|++||||||||.+|.+|++..+.... ..+++||++||
T Consensus 13 L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g-~dvl~~ApTGsGKT~af~lpll~~l~~~~--------~~~~~LIL~PT 83 (629)
T PRK11634 13 LKAPILEALNDLGYEKPSPIQAECIPHLLNG-RDVLGMAQTGSGKTAAFSLPLLHNLDPEL--------KAPQILVLAPT 83 (629)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHcC-CCEEEEcCCCCcHHHHHHHHHHHHhhhcc--------CCCeEEEEeCc
Confidence 677777777 68999999999999999876 56999999999999999999998875431 24689999999
Q ss_pred HHHHHHHHHHHhhhcccC-CcEEEEEeCCCccchhh---hccceEEEECcchH-HHHHhhcCCCcccccccEEEEecccc
Q 000756 560 KALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHL 634 (1300)
Q Consensus 560 kaLa~q~~~~~~~~l~~~-gi~V~~ltGd~~~~~~~---~~~~~IIV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH~ 634 (1300)
++||.|+++.+..+.+.+ ++.+..++|+.....+. ...++|||+||+++ +.+.+.. ..++++++|||||||+
T Consensus 84 reLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~---l~l~~l~~lVlDEAd~ 160 (629)
T PRK11634 84 RELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGT---LDLSKLSGLVLDEADE 160 (629)
T ss_pred HHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCC---cchhhceEEEeccHHH
Confidence 999999999998876654 78999999987655432 24689999999996 5555543 3578899999999998
Q ss_pred ccc-CChhHHHHHHHHHHHHHhhccCCeeEEEEcccCCCh-HHHHHHHhccccCceEEecCCcccccceeeEeeeecCch
Q 000756 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY-EDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKP 712 (1300)
Q Consensus 635 l~d-~rg~~le~iv~rl~~~~~~~~~~~riV~LSATlpn~-~dva~~L~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~ 712 (1300)
+.+ .+...++.++.. .+...|++++|||+|+. ..+...+..++ ..+...........+.+.++.+...
T Consensus 161 ml~~gf~~di~~Il~~-------lp~~~q~llfSAT~p~~i~~i~~~~l~~~-~~i~i~~~~~~~~~i~q~~~~v~~~-- 230 (629)
T PRK11634 161 MLRMGFIEDVETIMAQ-------IPEGHQTALFSATMPEAIRRITRRFMKEP-QEVRIQSSVTTRPDISQSYWTVWGM-- 230 (629)
T ss_pred HhhcccHHHHHHHHHh-------CCCCCeEEEEEccCChhHHHHHHHHcCCC-eEEEccCccccCCceEEEEEEechh--
Confidence 876 455555555443 46688999999999873 33443333222 1111111111112344444443322
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhh
Q 000756 713 LQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDL 792 (1300)
Q Consensus 713 ~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~l 792 (1300)
.+...+.. +.......++||||+|+..|..++..|...+
T Consensus 231 -~k~~~L~~-----~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g----------------------------------- 269 (629)
T PRK11634 231 -RKNEALVR-----FLEAEDFDAAIIFVRTKNATLEVAEALERNG----------------------------------- 269 (629)
T ss_pred -hHHHHHHH-----HHHhcCCCCEEEEeccHHHHHHHHHHHHhCC-----------------------------------
Confidence 12222222 2233335789999999999999999887543
Q ss_pred hcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccC
Q 000756 793 LPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAG 872 (1300)
Q Consensus 793 l~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAG 872 (1300)
+.+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ ||.+. +..+|+||+||||
T Consensus 270 --~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~----~d~P~------~~e~yvqRiGRtG 337 (629)
T PRK11634 270 --YNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVN----YDIPM------DSESYVHRIGRTG 337 (629)
T ss_pred --CCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEE----eCCCC------CHHHHHHHhcccc
Confidence 34678899999999999999999999999999999999999999999998 88775 8899999999999
Q ss_pred CCCCCCceEEEEEeCCCcHHHHH
Q 000756 873 RPQYDSYGEGIIITGHSELRYYL 895 (1300)
Q Consensus 873 R~g~d~~G~~iil~~~~~~~~y~ 895 (1300)
|.| +.|.+++++++.+...+.
T Consensus 338 RaG--r~G~ai~~v~~~e~~~l~ 358 (629)
T PRK11634 338 RAG--RAGRALLFVENRERRLLR 358 (629)
T ss_pred CCC--CcceEEEEechHHHHHHH
Confidence 988 889999999877654433
No 31
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.8e-40 Score=404.71 Aligned_cols=339 Identities=22% Similarity=0.353 Sum_probs=266.5
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCc
Q 000756 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (1300)
Q Consensus 482 Lp~~~~~~f--~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~ 559 (1300)
|++++..++ .||..|+|||.+++|.++.+ .+++++|+||||||.+|.+|+++.+...... ....+|+++||
T Consensus 36 l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g-~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~------~~~~aLil~PT 108 (513)
T COG0513 36 LSPELLQALKDLGFEEPTPIQLAAIPLILAG-RDVLGQAQTGTGKTAAFLLPLLQKILKSVER------KYVSALILAPT 108 (513)
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCC-CCEEEECCCCChHHHHHHHHHHHHHhccccc------CCCceEEECCC
Confidence 556666666 69999999999999999998 5699999999999999999999997742110 01119999999
Q ss_pred HHHHHHHHHHHhhhcccC-CcEEEEEeCCCccchhh--h-ccceEEEECcchH-HHHHhhcCCCcccccccEEEEecccc
Q 000756 560 KALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQ--I-EETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHL 634 (1300)
Q Consensus 560 kaLa~q~~~~~~~~l~~~-gi~V~~ltGd~~~~~~~--~-~~~~IIV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH~ 634 (1300)
|+||.|+++.+..+.... ++++..++|+.+...+. + .+++|+|+||+++ |++.+.. ..++.++++|+|||+.
T Consensus 109 RELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~---l~l~~v~~lVlDEADr 185 (513)
T COG0513 109 RELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGK---LDLSGVETLVLDEADR 185 (513)
T ss_pred HHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCC---cchhhcCEEEeccHhh
Confidence 999999999999988877 79999999998876653 2 3599999999996 6666662 4678999999999999
Q ss_pred ccc-CChhHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCc-eEEec-CCc--ccccceeeEeeeec
Q 000756 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKG-LFYFD-NSY--RPVPLSQQYIGIQV 709 (1300)
Q Consensus 635 l~d-~rg~~le~iv~rl~~~~~~~~~~~riV~LSATlpn~~dva~~L~~~~~~~-~~~f~-~~~--rpv~l~~~~~~~~~ 709 (1300)
|.+ ++.+.++.|+..+ +.+.|++++|||+|. .+..+........ ..... ... .+..+.|.++.+..
T Consensus 186 mLd~Gf~~~i~~I~~~~-------p~~~qtllfSAT~~~--~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~ 256 (513)
T COG0513 186 MLDMGFIDDIEKILKAL-------PPDRQTLLFSATMPD--DIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVES 256 (513)
T ss_pred hhcCCCHHHHHHHHHhC-------CcccEEEEEecCCCH--HHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCC
Confidence 998 5777777777654 558999999999997 3554443221111 22222 122 34567777776665
Q ss_pred CchhHHHHHHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhh
Q 000756 710 KKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDL 789 (1300)
Q Consensus 710 ~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L 789 (1300)
.. .++..+.. +.......++||||+|+..+..++..|...+
T Consensus 257 ~~--~k~~~L~~-----ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g-------------------------------- 297 (513)
T COG0513 257 EE--EKLELLLK-----LLKDEDEGRVIVFVRTKRLVEELAESLRKRG-------------------------------- 297 (513)
T ss_pred HH--HHHHHHHH-----HHhcCCCCeEEEEeCcHHHHHHHHHHHHHCC--------------------------------
Confidence 42 22322222 3333335579999999999999998887754
Q ss_pred hhhhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhh
Q 000756 790 KDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLG 869 (1300)
Q Consensus 790 ~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~G 869 (1300)
+.++.+||+|++.+|..+++.|++|..+|||||+++++|+|+|++.+||+ ||.+. ++.+|+||+|
T Consensus 298 -----~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~Vin----yD~p~------~~e~yvHRiG 362 (513)
T COG0513 298 -----FKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVIN----YDLPL------DPEDYVHRIG 362 (513)
T ss_pred -----CeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEE----ccCCC------CHHHheeccC
Confidence 33678899999999999999999999999999999999999999999999 88876 8999999999
Q ss_pred ccCCCCCCCceEEEEEeCCC-cHHHHH
Q 000756 870 RAGRPQYDSYGEGIIITGHS-ELRYYL 895 (1300)
Q Consensus 870 RAGR~g~d~~G~~iil~~~~-~~~~y~ 895 (1300)
|+||.| ..|.++.|+++. +...+.
T Consensus 363 RTgRaG--~~G~ai~fv~~~~e~~~l~ 387 (513)
T COG0513 363 RTGRAG--RKGVAISFVTEEEEVKKLK 387 (513)
T ss_pred ccccCC--CCCeEEEEeCcHHHHHHHH
Confidence 999998 999999999875 544443
No 32
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.3e-41 Score=378.06 Aligned_cols=340 Identities=21% Similarity=0.331 Sum_probs=270.8
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHH
Q 000756 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1300)
Q Consensus 491 ~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~ 570 (1300)
.||..|+|||.++||.++.+.+ ++.||.||||||.+|++|+|..+.-.+.. ....+||+++|||+|+.|++..+
T Consensus 199 lGy~~PTpIQ~a~IPvallgkD-Ica~A~TGsGKTAAF~lPiLERLlYrPk~-----~~~TRVLVL~PTRELaiQv~sV~ 272 (691)
T KOG0338|consen 199 LGYKKPTPIQVATIPVALLGKD-ICACAATGSGKTAAFALPILERLLYRPKK-----VAATRVLVLVPTRELAIQVHSVT 272 (691)
T ss_pred cCCCCCCchhhhcccHHhhcch-hhheecccCCchhhhHHHHHHHHhcCccc-----CcceeEEEEeccHHHHHHHHHHH
Confidence 5899999999999999998855 99999999999999999999887654221 23468999999999999999999
Q ss_pred hhhcccCCcEEEEEeCCCccchhh---hccceEEEECcchH-HHHHhhcCCCcccccccEEEEeccccccc-CChhHHHH
Q 000756 571 SNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLES 645 (1300)
Q Consensus 571 ~~~l~~~gi~V~~ltGd~~~~~~~---~~~~~IIV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~ 645 (1300)
+++.....|.|+...|+.++..+. ...++|+|+||++| |++ |++.. ..+.++..+|+|||+.|.+ .+...+..
T Consensus 273 ~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHl-rNs~s-f~ldsiEVLvlDEADRMLeegFademnE 350 (691)
T KOG0338|consen 273 KQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHL-RNSPS-FNLDSIEVLVLDEADRMLEEGFADEMNE 350 (691)
T ss_pred HHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHh-ccCCC-ccccceeEEEechHHHHHHHHHHHHHHH
Confidence 998888899999999999887664 36899999999997 555 44443 4678999999999999987 46666665
Q ss_pred HHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEe--cCCcccccceeeEeeeecCchhHHHHHHHHHH
Q 000756 646 IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYF--DNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLC 723 (1300)
Q Consensus 646 iv~rl~~~~~~~~~~~riV~LSATlpn~~dva~~L~~~~~~~~~~f--~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~ 723 (1300)
|+.- .+++.|.+++|||+.. .|.+.......+.+-.| .+..++..|.|.|+.+.......+-..+..+
T Consensus 351 ii~l-------cpk~RQTmLFSATMte--eVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l- 420 (691)
T KOG0338|consen 351 IIRL-------CPKNRQTMLFSATMTE--EVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASL- 420 (691)
T ss_pred HHHh-------ccccccceeehhhhHH--HHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHH-
Confidence 5543 3678899999999974 55555555544444443 4445566788888877755433332222222
Q ss_pred HHHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCC
Q 000756 724 YEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAG 803 (1300)
Q Consensus 724 ~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hag 803 (1300)
+.... ...+||||.|++.|.++.-.|--+ ...+|-+||.
T Consensus 421 ---~~rtf-~~~~ivFv~tKk~AHRl~IllGLl-------------------------------------gl~agElHGs 459 (691)
T KOG0338|consen 421 ---ITRTF-QDRTIVFVRTKKQAHRLRILLGLL-------------------------------------GLKAGELHGS 459 (691)
T ss_pred ---HHHhc-ccceEEEEehHHHHHHHHHHHHHh-------------------------------------hchhhhhccc
Confidence 22222 467999999999998876655433 3446667999
Q ss_pred CCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCCCCCCceEEE
Q 000756 804 MTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883 (1300)
Q Consensus 804 l~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d~~G~~i 883 (1300)
|++.+|-..++.|+++.+.|||||+++++|+||+++.+||+ |+.|. ++..|+||+||+.|+| +.|.++
T Consensus 460 LtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVIN----y~mP~------t~e~Y~HRVGRTARAG--RaGrsV 527 (691)
T KOG0338|consen 460 LTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVIN----YAMPK------TIEHYLHRVGRTARAG--RAGRSV 527 (691)
T ss_pred ccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEe----ccCch------hHHHHHHHhhhhhhcc--cCcceE
Confidence 99999999999999999999999999999999999999999 88776 8999999999999998 899999
Q ss_pred EEeCCCcHHHHHHhhcCC
Q 000756 884 IITGHSELRYYLSLMNQQ 901 (1300)
Q Consensus 884 il~~~~~~~~y~~ll~~~ 901 (1300)
.+...++....+..+...
T Consensus 528 tlvgE~dRkllK~iik~~ 545 (691)
T KOG0338|consen 528 TLVGESDRKLLKEIIKSS 545 (691)
T ss_pred EEeccccHHHHHHHHhhh
Confidence 999999887777665543
No 33
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=7.4e-40 Score=369.84 Aligned_cols=351 Identities=19% Similarity=0.293 Sum_probs=276.5
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCC-CCCCCCcEEEEEcC
Q 000756 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDG-SFNHSNYKIVYVAP 558 (1300)
Q Consensus 482 Lp~~~~~~f--~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g-~~~~~~~kiv~iaP 558 (1300)
+|.....+. .||..|+|||.+++|..++. .++|..|.||||||.+|++|++-.+.....-.. .-...++.+++++|
T Consensus 252 ~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~-rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilap 330 (673)
T KOG0333|consen 252 FPLELLSVIKKPGYKEPTPIQRQAIPLGLQN-RDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAP 330 (673)
T ss_pred CCHHHHHHHHhcCCCCCchHHHhhccchhcc-CCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeech
Confidence 455555554 79999999999999977665 569999999999999999999998876542111 11235789999999
Q ss_pred cHHHHHHHHHHHhhhcccCCcEEEEEeCCCccchhh---hccceEEEECcchH-HHHHhhcCCCcccccccEEEEecccc
Q 000756 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHL 634 (1300)
Q Consensus 559 ~kaLa~q~~~~~~~~l~~~gi~V~~ltGd~~~~~~~---~~~~~IIV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH~ 634 (1300)
||+|++|+..+-.++...+|+++..+.|+.+...+. ..+|.|+|+||+++ |.|-++.. .++.+.+||+|||+.
T Consensus 331 tReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~l---vl~qctyvvldeadr 407 (673)
T KOG0333|consen 331 TRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYL---VLNQCTYVVLDEADR 407 (673)
T ss_pred HHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHH---HhccCceEeccchhh
Confidence 999999999999999999999999999999988763 35899999999996 77777664 678899999999999
Q ss_pred ccc-CChhHHHHHHHHHHHH------------------HhhccCCeeEEEEcccCCCh-HHHH-HHHhccccCceEEecC
Q 000756 635 LHD-NRGPVLESIVARTVRQ------------------IETTKEHIRLVGLSATLPNY-EDVA-LFLRVNLEKGLFYFDN 693 (1300)
Q Consensus 635 l~d-~rg~~le~iv~rl~~~------------------~~~~~~~~riV~LSATlpn~-~dva-~~L~~~~~~~~~~f~~ 693 (1300)
+.| ++-+.+..++..+... ......-.+.+.||||+|.. +-++ .||+.. ...+...
T Consensus 408 miDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~p---v~vtig~ 484 (673)
T KOG0333|consen 408 MIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRP---VVVTIGS 484 (673)
T ss_pred hhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCC---eEEEecc
Confidence 998 6888888777665311 11111226889999999973 3344 455432 2344555
Q ss_pred Cccccc-ceeeEeeeecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCch
Q 000756 694 SYRPVP-LSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSV 772 (1300)
Q Consensus 694 ~~rpv~-l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~ 772 (1300)
..+|.| ++|.+..++.....+ .+.+ +.+.....++|||||+++.|..+|+.|...+
T Consensus 485 ~gk~~~rveQ~v~m~~ed~k~k---kL~e-----il~~~~~ppiIIFvN~kk~~d~lAk~LeK~g--------------- 541 (673)
T KOG0333|consen 485 AGKPTPRVEQKVEMVSEDEKRK---KLIE-----ILESNFDPPIIIFVNTKKGADALAKILEKAG--------------- 541 (673)
T ss_pred CCCCccchheEEEEecchHHHH---HHHH-----HHHhCCCCCEEEEEechhhHHHHHHHHhhcc---------------
Confidence 566765 455555555543322 2222 2222236799999999999999999987765
Q ss_pred hHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCC
Q 000756 773 SREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPE 852 (1300)
Q Consensus 773 ~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~ 852 (1300)
+.+..+|||-++++|+.++..|+.|...|||||+++++|||+|+|.+||+ ||..
T Consensus 542 ----------------------~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVin----ydma 595 (673)
T KOG0333|consen 542 ----------------------YKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVIN----YDMA 595 (673)
T ss_pred ----------------------ceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeee----cchh
Confidence 44678899999999999999999999999999999999999999999999 9988
Q ss_pred CCCcccCCHHHHHHhhhccCCCCCCCceEEEEEeCCCcHHHHHH
Q 000756 853 KGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLS 896 (1300)
Q Consensus 853 ~g~~~~~S~~d~lQr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ 896 (1300)
+ |+.||+||+||+||+| +.|.++.|++..+...|..
T Consensus 596 k------sieDYtHRIGRTgRAG--k~GtaiSflt~~dt~v~yd 631 (673)
T KOG0333|consen 596 K------SIEDYTHRIGRTGRAG--KSGTAISFLTPADTAVFYD 631 (673)
T ss_pred h------hHHHHHHHhccccccc--cCceeEEEeccchhHHHHH
Confidence 7 8999999999999998 9999999999988665543
No 34
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=5.5e-40 Score=409.14 Aligned_cols=409 Identities=28% Similarity=0.383 Sum_probs=307.3
Q ss_pred CCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhc
Q 000756 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1300)
Q Consensus 495 ~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l 574 (1300)
.|.++|++++..+ ..+++++||||||||||.++..+|...+..+ .+++|++|.|||.+|.+++|..++
T Consensus 119 ~LD~fQ~~a~~~L-er~esVlV~ApTssGKTvVaeyAi~~al~~~-----------qrviYTsPIKALsNQKyrdl~~~f 186 (1041)
T COG4581 119 ELDPFQQEAIAIL-ERGESVLVCAPTSSGKTVVAEYAIALALRDG-----------QRVIYTSPIKALSNQKYRDLLAKF 186 (1041)
T ss_pred CcCHHHHHHHHHH-hCCCcEEEEccCCCCcchHHHHHHHHHHHcC-----------CceEeccchhhhhhhHHHHHHHHh
Confidence 7899999999865 5568899999999999999999999888753 469999999999999999999888
Q ss_pred ccCCcEEEEEeCCCccchhhhccceEEEECcchHHHHHhhcCCCcccccccEEEEeccccccc-CChhHHHHHHHHHHHH
Q 000756 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQ 653 (1300)
Q Consensus 575 ~~~gi~V~~ltGd~~~~~~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~iv~rl~~~ 653 (1300)
...--.|+.+|||.+.+. .+.++|+|.|-+..+..+.. ..+..+..||+||+|.+.| +||.++|.++-.
T Consensus 187 gdv~~~vGL~TGDv~IN~----~A~clvMTTEILRnMlyrg~--~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~---- 256 (1041)
T COG4581 187 GDVADMVGLMTGDVSINP----DAPCLVMTTEILRNMLYRGS--ESLRDIEWVVFDEVHYIGDRERGVVWEEVIIL---- 256 (1041)
T ss_pred hhhhhhccceecceeeCC----CCceEEeeHHHHHHHhccCc--ccccccceEEEEeeeeccccccchhHHHHHHh----
Confidence 643224689999999886 58889999898755555543 5788999999999999999 799999998764
Q ss_pred HhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCcccccceeeEeee-------ecCch--hHHHHHHHHHH-
Q 000756 654 IETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGI-------QVKKP--LQRFQLMNDLC- 723 (1300)
Q Consensus 654 ~~~~~~~~riV~LSATlpn~~dva~~L~~~~~~~~~~f~~~~rpv~l~~~~~~~-------~~~~~--~~~~~~~~~~~- 723 (1300)
.+..+++|+||||+||+.+++.|++......+......+||+||.+++..- .+... ...+...+..+
T Consensus 257 ---lP~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~ 333 (1041)
T COG4581 257 ---LPDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLS 333 (1041)
T ss_pred ---cCCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhh
Confidence 477899999999999999999999977677788899999999999877542 11111 00000000000
Q ss_pred ----------------------------------HHHHHHH--hCCCeEEEEEcChHHHHHHHHHHHHHhhccccccccc
Q 000756 724 ----------------------------------YEKVVAV--AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFL 767 (1300)
Q Consensus 724 ----------------------------------~~~i~~~--~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l 767 (1300)
++.+... ...-|+|+|+-|++.|+..|..+...-......
T Consensus 334 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~---- 409 (1041)
T COG4581 334 CFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEE---- 409 (1041)
T ss_pred ccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCc----
Confidence 0111111 124589999999999999999887443222110
Q ss_pred ccCch-hHHHHHhhhhcc---------cchhhhhhhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCC
Q 000756 768 KEDSV-SREILQSHTDMV---------KSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLP 837 (1300)
Q Consensus 768 ~~~~~-~~~~l~~~~~~~---------~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlP 837 (1300)
... -+.++...+..+ +-..+..+|..|+|+||+||-+..|..|+.+|..|.++|++||.|++.|+|+|
T Consensus 410 --~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmP 487 (1041)
T COG4581 410 --KERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMP 487 (1041)
T ss_pred --HHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCc
Confidence 011 223344333332 22456778889999999999999999999999999999999999999999999
Q ss_pred CcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCCCCCCceEEEEEeCCCc--HHHHHHh-hcCCCCcccchhHhHHH
Q 000756 838 AHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE--LRYYLSL-MNQQLPIESQFVSKLAD 914 (1300)
Q Consensus 838 av~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d~~G~~iil~~~~~--~~~y~~l-l~~~lPiES~l~~~l~d 914 (1300)
+.+||+-+.+.||+.. ..+++..+|.||.|||||.|.|..|.+|++-.... ......+ .....|+-|+|...+..
T Consensus 488 artvv~~~l~K~dG~~--~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~~~~~~e~~~l~~~~~~~L~s~f~~sy~m 565 (1041)
T COG4581 488 ARTVVFTSLSKFDGNG--HRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFESEPSEAAGLASGKLDPLRSQFRLSYNM 565 (1041)
T ss_pred ccceeeeeeEEecCCc--eeecChhHHHHhhhhhccccccccceEEEecCCCCCChHHHHHhhcCCCccchhheecchhH
Confidence 9999999999999654 68899999999999999999999999999954433 2333333 34566777887765544
Q ss_pred HHHHHHHhccccCHHHHHHHHHhhHH
Q 000756 915 QLNAEIVLGTVQNAKEACNWIGYTYL 940 (1300)
Q Consensus 915 ~lnaEI~~g~i~~~~d~~~wL~~T~l 940 (1300)
.+|-- .+...+.+-..+..+|.
T Consensus 566 ilnll----~v~~l~~~e~ll~~Sf~ 587 (1041)
T COG4581 566 ILNLL----RVEGLQTAEDLLERSFA 587 (1041)
T ss_pred HHhhh----hhcccCcHHHHHHhhHH
Confidence 44432 23333333444555543
No 35
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=6.2e-40 Score=370.22 Aligned_cols=351 Identities=21% Similarity=0.324 Sum_probs=274.6
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcC
Q 000756 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (1300)
Q Consensus 481 ~Lp~~~~~~f--~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP 558 (1300)
.|.+...+++ .||.++|++|.++++.++.+. ++|+.|-||+|||++|++|+++.+.+..... ..+..+|+|+|
T Consensus 88 ~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gk-Dvl~~AKTGtGKTlAFLiPaie~l~k~~~~~----r~~~~vlIi~P 162 (543)
T KOG0342|consen 88 SLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGK-DVLAAAKTGTGKTLAFLLPAIELLRKLKFKP----RNGTGVLIICP 162 (543)
T ss_pred ccCHHHHHHHHhcCccchhHHHHhhcCccCCCc-cceeeeccCCCceeeehhHHHHHHHhcccCC----CCCeeEEEecc
Confidence 4556666666 799999999999999999885 6999999999999999999999998764432 25678999999
Q ss_pred cHHHHHHHHHHHhhhcccC-CcEEEEEeCCCccchhh---hccceEEEECcchH-HHHHhhcCCCcccccccEEEEeccc
Q 000756 559 MKALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIH 633 (1300)
Q Consensus 559 ~kaLa~q~~~~~~~~l~~~-gi~V~~ltGd~~~~~~~---~~~~~IIV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH 633 (1300)
||+||.|++...++.+... ++.|+.+.|+....... ...++|+|+||++| |++.+... ..+.+++++|+|||+
T Consensus 163 TRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~--f~~r~~k~lvlDEAD 240 (543)
T KOG0342|consen 163 TRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSG--FLFRNLKCLVLDEAD 240 (543)
T ss_pred cHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCc--chhhccceeEeecch
Confidence 9999999999999999876 89999999998765432 35899999999997 66666555 466778999999999
Q ss_pred cccc-CChhHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccC-ceEE-ecCCccc---ccceeeEeee
Q 000756 634 LLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEK-GLFY-FDNSYRP---VPLSQQYIGI 707 (1300)
Q Consensus 634 ~l~d-~rg~~le~iv~rl~~~~~~~~~~~riV~LSATlpn~~dva~~L~~~~~~-~~~~-f~~~~rp---v~l~~~~~~~ 707 (1300)
++.+ ++...++.|+.-+ +...|.+++|||.|. .|.+..++.... .+|. .+..-.+ -.+.|-|+..
T Consensus 241 rlLd~GF~~di~~Ii~~l-------pk~rqt~LFSAT~~~--kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~ 311 (543)
T KOG0342|consen 241 RLLDIGFEEDVEQIIKIL-------PKQRQTLLFSATQPS--KVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVA 311 (543)
T ss_pred hhhhcccHHHHHHHHHhc-------cccceeeEeeCCCcH--HHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEec
Confidence 9998 6777777776644 578899999999985 343333332222 2222 1222222 2455545544
Q ss_pred ecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccch
Q 000756 708 QVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSN 787 (1300)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~ 787 (1300)
+... ++. .+|..+.++....++||||+|...+..++..|....
T Consensus 312 ~~~~---~f~----ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~d------------------------------ 354 (543)
T KOG0342|consen 312 PSDS---RFS----LLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYID------------------------------ 354 (543)
T ss_pred cccc---hHH----HHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcC------------------------------
Confidence 4332 222 344555555556899999999999999988887432
Q ss_pred hhhhhhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHh
Q 000756 788 DLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQM 867 (1300)
Q Consensus 788 ~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr 867 (1300)
..|..+||++++..|..+...|++.+.-|||||+++|||+|+|+|+.||. |+||. .+.+|+||
T Consensus 355 -------lpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ----~~~P~------d~~~YIHR 417 (543)
T KOG0342|consen 355 -------LPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQ----YDPPS------DPEQYIHR 417 (543)
T ss_pred -------CchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEE----eCCCC------CHHHHHHH
Confidence 23555699999999999999999999999999999999999999999998 99887 78999999
Q ss_pred hhccCCCCCCCceEEEEEeCCCcHHHHHHhhcCCCCcc
Q 000756 868 LGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIE 905 (1300)
Q Consensus 868 ~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~lPiE 905 (1300)
+||+||.| +.|+++++..+.++.+...+- .+|++
T Consensus 418 vGRTaR~g--k~G~alL~l~p~El~Flr~LK--~lpl~ 451 (543)
T KOG0342|consen 418 VGRTAREG--KEGKALLLLAPWELGFLRYLK--KLPLE 451 (543)
T ss_pred hccccccC--CCceEEEEeChhHHHHHHHHh--hCCCc
Confidence 99999977 999999999999987665543 55554
No 36
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.9e-39 Score=358.78 Aligned_cols=348 Identities=19% Similarity=0.313 Sum_probs=267.3
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCc
Q 000756 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (1300)
Q Consensus 482 Lp~~~~~~f--~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~ 559 (1300)
|.+|+..++ .||..+||+|..++|.++.. .++++-||||||||++|++|++..+...... ......-+|+|+||
T Consensus 13 L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~-KDVvveavTGSGKTlAFllP~le~i~rr~~~---~~~~~vgalIIsPT 88 (567)
T KOG0345|consen 13 LSPWLLEALDESGFEKMTPVQAATIPLLLKN-KDVVVEAVTGSGKTLAFLLPMLEIIYRREAK---TPPGQVGALIISPT 88 (567)
T ss_pred ccHHHHHHHHhcCCcccCHHHHhhhHHHhcC-CceEEEcCCCCCchhhHHHHHHHHHHhhccC---CCccceeEEEecCc
Confidence 568999998 79999999999999988766 5599999999999999999999998543211 11224579999999
Q ss_pred HHHHHHHHHHHhhhccc-CCcEEEEEeCCCccchhh----hccceEEEECcchH-HHHHhhcCCCcccccccEEEEeccc
Q 000756 560 KALVAEVVGNLSNRLQM-YDVKVRELSGDQTLTRQQ----IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIH 633 (1300)
Q Consensus 560 kaLa~q~~~~~~~~l~~-~gi~V~~ltGd~~~~~~~----~~~~~IIV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH 633 (1300)
|+||.|+.+....++.. .++++..++|+.+..... ..+++|+|+||+++ |++.|... ...+..+.++|+|||+
T Consensus 89 RELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~-~l~~rsLe~LVLDEAD 167 (567)
T KOG0345|consen 89 RELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAE-KLSFRSLEILVLDEAD 167 (567)
T ss_pred HHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhh-hccccccceEEecchH
Confidence 99999999998887776 478899999997766532 35789999999997 55555443 2346789999999999
Q ss_pred cccc-CChhHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEE--ec--CCcccccceeeEeeee
Q 000756 634 LLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFY--FD--NSYRPVPLSQQYIGIQ 708 (1300)
Q Consensus 634 ~l~d-~rg~~le~iv~rl~~~~~~~~~~~riV~LSATlpn~~dva~~L~~~~~~~~~~--f~--~~~rpv~l~~~~~~~~ 708 (1300)
.|.| ++...+..|++++ +...|.=++|||... .+.+..++...+.+-. -. .+..|..+..+|..+.
T Consensus 168 rLldmgFe~~~n~ILs~L-------PKQRRTGLFSATq~~--~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~ 238 (567)
T KOG0345|consen 168 RLLDMGFEASVNTILSFL-------PKQRRTGLFSATQTQ--EVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCE 238 (567)
T ss_pred hHhcccHHHHHHHHHHhc-------ccccccccccchhhH--HHHHHHHhhccCceeeeecccccccCchhhcceeeEec
Confidence 9998 6777777777765 667788899999753 4444443332222211 11 1225666777777765
Q ss_pred cCchhHHHHHHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchh
Q 000756 709 VKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSND 788 (1300)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~ 788 (1300)
.. .++..+..+ +.. ...+++|||.+|...++.....+....
T Consensus 239 a~---eK~~~lv~~----L~~-~~~kK~iVFF~TCasVeYf~~~~~~~l------------------------------- 279 (567)
T KOG0345|consen 239 AD---EKLSQLVHL----LNN-NKDKKCIVFFPTCASVEYFGKLFSRLL------------------------------- 279 (567)
T ss_pred HH---HHHHHHHHH----Hhc-cccccEEEEecCcchHHHHHHHHHHHh-------------------------------
Confidence 43 233333222 222 346899999999999988887765541
Q ss_pred hhhhhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhh
Q 000756 789 LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQML 868 (1300)
Q Consensus 789 L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~ 868 (1300)
.+..+..+||.|.+..|..++..|++..-.||+||+++|+|+|+|++++||+ ||||+ .+..|+||+
T Consensus 280 ----~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ----~DpP~------~~~~FvHR~ 345 (567)
T KOG0345|consen 280 ----KKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQ----FDPPK------DPSSFVHRC 345 (567)
T ss_pred ----CCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEe----cCCCC------ChhHHHhhc
Confidence 1234677899999999999999999988899999999999999999999998 99998 788999999
Q ss_pred hccCCCCCCCceEEEEEeCCCcHHHHHHhhc
Q 000756 869 GRAGRPQYDSYGEGIIITGHSELRYYLSLMN 899 (1300)
Q Consensus 869 GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~ 899 (1300)
||+||.| +.|.++++..+.+ ..|..|+.
T Consensus 346 GRTaR~g--r~G~Aivfl~p~E-~aYveFl~ 373 (567)
T KOG0345|consen 346 GRTARAG--REGNAIVFLNPRE-EAYVEFLR 373 (567)
T ss_pred chhhhcc--CccceEEEecccH-HHHHHHHH
Confidence 9999998 9999999999855 45555543
No 37
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=6.7e-39 Score=391.70 Aligned_cols=329 Identities=21% Similarity=0.268 Sum_probs=239.5
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHH
Q 000756 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1300)
Q Consensus 491 ~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~ 570 (1300)
.||+.|+|+|.++++.++.+. +++++||||+|||++|++|++.. +..+|||+|+++|+.|++..+
T Consensus 7 ~g~~~~r~~Q~~ai~~~l~g~-dvlv~apTGsGKTl~y~lp~l~~--------------~~~~lVi~P~~~L~~dq~~~l 71 (470)
T TIGR00614 7 FGLSSFRPVQLEVINAVLLGR-DCFVVMPTGGGKSLCYQLPALCS--------------DGITLVISPLISLMEDQVLQL 71 (470)
T ss_pred cCCCCCCHHHHHHHHHHHcCC-CEEEEcCCCCcHhHHHHHHHHHc--------------CCcEEEEecHHHHHHHHHHHH
Confidence 389999999999999999875 69999999999999999998742 225899999999999999888
Q ss_pred hhhcccCCcEEEEEeCCCccchh-------hhccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccCChhHH
Q 000756 571 SNRLQMYDVKVRELSGDQTLTRQ-------QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVL 643 (1300)
Q Consensus 571 ~~~l~~~gi~V~~ltGd~~~~~~-------~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~l 643 (1300)
.. .|+.+..++|+...... .....+|+++|||++....+..........+++|||||||++.+ +|..+
T Consensus 72 ~~----~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~-~g~~f 146 (470)
T TIGR00614 72 KA----SGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQ-WGHDF 146 (470)
T ss_pred HH----cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCc-ccccc
Confidence 64 47888888887654421 12357899999998632111110001356789999999999875 23223
Q ss_pred HHHHHHHHHHHhhccCCeeEEEEcccCCCh--HHHHHHHhccccCceEEecCCcccccceeeEeeeecCchhHHHHHHHH
Q 000756 644 ESIVARTVRQIETTKEHIRLVGLSATLPNY--EDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMND 721 (1300)
Q Consensus 644 e~iv~rl~~~~~~~~~~~riV~LSATlpn~--~dva~~L~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~ 721 (1300)
...+.++... ....+.+++++||||+++. .++..+++... ..+ +..++....+...+ ..... ..+..
T Consensus 147 r~~~~~l~~l-~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~--~~~-~~~s~~r~nl~~~v---~~~~~-~~~~~--- 215 (470)
T TIGR00614 147 RPDYKALGSL-KQKFPNVPIMALTATASPSVREDILRQLNLKN--PQI-FCTSFDRPNLYYEV---RRKTP-KILED--- 215 (470)
T ss_pred HHHHHHHHHH-HHHcCCCceEEEecCCCHHHHHHHHHHcCCCC--CcE-EeCCCCCCCcEEEE---EeCCc-cHHHH---
Confidence 3333332221 2234678899999998763 46777776532 222 22233222222111 11111 11111
Q ss_pred HHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEec
Q 000756 722 LCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHH 801 (1300)
Q Consensus 722 ~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~H 801 (1300)
+...+.....+..+||||+|++.|+.++..|...+ ..++.+|
T Consensus 216 -l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g-------------------------------------~~~~~~H 257 (470)
T TIGR00614 216 -LLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLG-------------------------------------IAAGAYH 257 (470)
T ss_pred -HHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcC-------------------------------------CCeeEee
Confidence 22223333345677999999999999999887543 3468899
Q ss_pred CCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCCCCCCceE
Q 000756 802 AGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGE 881 (1300)
Q Consensus 802 agl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d~~G~ 881 (1300)
|+|+..+|..+++.|++|.++|||||+++++|||+|++++||+ |+++. |+.+|+||+|||||.| ..|.
T Consensus 258 ~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~----~~~P~------s~~~y~Qr~GRaGR~G--~~~~ 325 (470)
T TIGR00614 258 AGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIH----YSLPK------SMESYYQESGRAGRDG--LPSE 325 (470)
T ss_pred CCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEE----eCCCC------CHHHHHhhhcCcCCCC--CCce
Confidence 9999999999999999999999999999999999999999998 88876 8999999999999987 7899
Q ss_pred EEEEeCCCcHHHHHHhhcC
Q 000756 882 GIIITGHSELRYYLSLMNQ 900 (1300)
Q Consensus 882 ~iil~~~~~~~~y~~ll~~ 900 (1300)
|+++++..+......++..
T Consensus 326 ~~~~~~~~d~~~~~~~~~~ 344 (470)
T TIGR00614 326 CHLFYAPADINRLRRLLME 344 (470)
T ss_pred EEEEechhHHHHHHHHHhc
Confidence 9999999888877776543
No 38
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-38 Score=360.10 Aligned_cols=380 Identities=20% Similarity=0.273 Sum_probs=272.6
Q ss_pred CCChhhHhhc---CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEc
Q 000756 481 EMPEWAQPAF---KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA 557 (1300)
Q Consensus 481 ~Lp~~~~~~f---~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~ia 557 (1300)
.|.+.+...+ .++..||.+|.++||.+++++ ++||.|+||||||++|++||++.+..... ..-+..+.-+|+|+
T Consensus 142 GL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~gr-D~lV~aQTGSGKTLAYllPiVq~Lq~m~~--ki~Rs~G~~ALViv 218 (708)
T KOG0348|consen 142 GLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGR-DALVRAQTGSGKTLAYLLPIVQSLQAMEP--KIQRSDGPYALVIV 218 (708)
T ss_pred CCCHHHHHHHHHHhccCccchHhhcchhhhhcCc-ceEEEcCCCCcccHHHHHHHHHHHHhcCc--cccccCCceEEEEe
Confidence 4455555544 578999999999999999975 49999999999999999999999987532 12234678899999
Q ss_pred CcHHHHHHHHHHHhhhcccCC-cEEEEEeCCCcc-ch--hhhccceEEEECcchH-HHHHhhcCCCcccccccEEEEecc
Q 000756 558 PMKALVAEVVGNLSNRLQMYD-VKVRELSGDQTL-TR--QQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEI 632 (1300)
Q Consensus 558 P~kaLa~q~~~~~~~~l~~~g-i~V~~ltGd~~~-~~--~~~~~~~IIV~TPekl-d~l~r~~~~~~~l~~v~liIiDEa 632 (1300)
|||+||.|+++.++++++++. |.-+.+.|+... +. +...+.+|+|+||+++ |.|..... ..++++++||+||+
T Consensus 219 PTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~--i~~s~LRwlVlDEa 296 (708)
T KOG0348|consen 219 PTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKS--IKFSRLRWLVLDEA 296 (708)
T ss_pred chHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccch--heeeeeeEEEecch
Confidence 999999999999999998764 344556665432 22 2357899999999996 77765443 45678999999999
Q ss_pred ccccc-CChhHHHHHHHHHHHHHh------hccCCeeEEEEcccCCChHHHHHHHhccccCceEEe--------------
Q 000756 633 HLLHD-NRGPVLESIVARTVRQIE------TTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYF-------------- 691 (1300)
Q Consensus 633 H~l~d-~rg~~le~iv~rl~~~~~------~~~~~~riV~LSATlpn~~dva~~L~~~~~~~~~~f-------------- 691 (1300)
+.|.+ +++..+..|+..+-.+.. ..+...+-+++||||.+ .|.+.-+......++.-
T Consensus 297 DrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd--~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a 374 (708)
T KOG0348|consen 297 DRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTD--GVNRLADLSLKDPVYISLDKSHSQLNPKDKA 374 (708)
T ss_pred hHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHH--HHHHHhhccccCceeeeccchhhhcCcchhh
Confidence 99998 788888888776532111 11224677999999974 23333222221111111
Q ss_pred -------------cCCcccccceeeEeeeecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhh
Q 000756 692 -------------DNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTAL 758 (1300)
Q Consensus 692 -------------~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~ 758 (1300)
+...-|-.|.|+|..++.+- ++-.+..++.+.+... ...++|||+++...++.-+..+.....
T Consensus 375 ~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKL---RLV~Laa~L~~~~k~~-~~qk~iVF~S~~d~VeFHy~lf~~~l~ 450 (708)
T KOG0348|consen 375 VQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKL---RLVALAALLLNKVKFE-EKQKMIVFFSCSDSVEFHYSLFSEALL 450 (708)
T ss_pred hhhcCCcccccccccccCcHHhhhceEecCCch---hHHHHHHHHHHHhhhh-hhceeEEEEechhHHHHHHHHHHhhhh
Confidence 11223445666777666552 3444444444444332 245899999999999988888776543
Q ss_pred cccccccccccCchhHHHHHhhhhcccchhhh-hhhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCC
Q 000756 759 ENDTLGRFLKEDSVSREILQSHTDMVKSNDLK-DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLP 837 (1300)
Q Consensus 759 ~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~-~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlP 837 (1300)
....- ......+..+. -++...+.-+||+|++++|..+++.|+...--||+||++++||+|+|
T Consensus 451 ~~~e~----------------~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP 514 (708)
T KOG0348|consen 451 SHLEG----------------SSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLP 514 (708)
T ss_pred ccccc----------------ccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCC
Confidence 21000 00000111111 12234577889999999999999999999889999999999999999
Q ss_pred CcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCCCCCCceEEEEEeCCCcHHHHHHhhcC
Q 000756 838 AHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQ 900 (1300)
Q Consensus 838 av~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~ 900 (1300)
.|++||. ||+|. +..||+||+||+.|.| ..|.+++|..+.+.+ |.+++..
T Consensus 515 ~V~~vVQ----Yd~P~------s~adylHRvGRTARaG--~kG~alLfL~P~Eae-y~~~l~~ 564 (708)
T KOG0348|consen 515 HVGLVVQ----YDPPF------STADYLHRVGRTARAG--EKGEALLFLLPSEAE-YVNYLKK 564 (708)
T ss_pred CcCeEEE----eCCCC------CHHHHHHHhhhhhhcc--CCCceEEEecccHHH-HHHHHHh
Confidence 9999998 99886 8999999999999998 899999999999988 5555443
No 39
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.5e-39 Score=347.96 Aligned_cols=344 Identities=18% Similarity=0.288 Sum_probs=272.1
Q ss_pred cCCCCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEE
Q 000756 478 KISEMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVY 555 (1300)
Q Consensus 478 ~i~~Lp~~~~~~f--~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~ 555 (1300)
+.-.|.+|+.+.+ .|++.++|+|..|+|.++++. ++|-||.||||||.+|.+||++.+..++. +.-+++
T Consensus 10 ~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGr-dcig~AkTGsGKT~AFaLPil~rLsedP~--------giFalv 80 (442)
T KOG0340|consen 10 SILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGR-DCIGCAKTGSGKTAAFALPILNRLSEDPY--------GIFALV 80 (442)
T ss_pred hhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhccc-ccccccccCCCcchhhhHHHHHhhccCCC--------cceEEE
Confidence 4556789998887 689999999999999999985 49999999999999999999999988642 446899
Q ss_pred EcCcHHHHHHHHHHHhhhcccCCcEEEEEeCCCccchhh---hccceEEEECcchHHHHHhhc-C-CCcccccccEEEEe
Q 000756 556 VAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKS-G-DRTYTQLVKLLIID 630 (1300)
Q Consensus 556 iaP~kaLa~q~~~~~~~~l~~~gi~V~~ltGd~~~~~~~---~~~~~IIV~TPekld~l~r~~-~-~~~~l~~v~liIiD 630 (1300)
+.|||+||-|+.+.|....+.+++++..++|++..-.+. ...+|++|+|||++....+.. . ....+++++++|+|
T Consensus 81 lTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlD 160 (442)
T KOG0340|consen 81 LTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLD 160 (442)
T ss_pred ecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEec
Confidence 999999999999999988888999999999988654432 357999999999984444444 2 23457889999999
Q ss_pred ccccccc-CChhHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCc----ccccceeeEe
Q 000756 631 EIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSY----RPVPLSQQYI 705 (1300)
Q Consensus 631 EaH~l~d-~rg~~le~iv~rl~~~~~~~~~~~riV~LSATlpn~~dva~~L~~~~~~~~~~f~~~~----rpv~l~~~~~ 705 (1300)
||+.+.+ .+...++.+... .+.+.+.++||||+.+ .+....++....+..++.... .+-.|.+.|+
T Consensus 161 EADrvL~~~f~d~L~~i~e~-------lP~~RQtLlfSATitd--~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI 231 (442)
T KOG0340|consen 161 EADRVLAGCFPDILEGIEEC-------LPKPRQTLLFSATITD--TIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYI 231 (442)
T ss_pred chhhhhccchhhHHhhhhcc-------CCCccceEEEEeehhh--HHHHhhcCCcccccceEEeccCCCCchhhhhhhee
Confidence 9999886 466666655543 3666789999999974 455666655444334443332 2335777777
Q ss_pred eeecCchhHHHHHHHHHHHHHHHHHh--CCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhc
Q 000756 706 GIQVKKPLQRFQLMNDLCYEKVVAVA--GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDM 783 (1300)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~ 783 (1300)
.++..... -.+|..+.... +++.++|||++..+|+.++..|..+.
T Consensus 232 ~~~~~vkd-------aYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le-------------------------- 278 (442)
T KOG0340|consen 232 LVSIDVKD-------AYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLE-------------------------- 278 (442)
T ss_pred ecchhhhH-------HHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhc--------------------------
Confidence 66654211 11222232222 36789999999999999998887654
Q ss_pred ccchhhhhhhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHH
Q 000756 784 VKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLD 863 (1300)
Q Consensus 784 ~~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d 863 (1300)
..++.+|+.|++.+|-..+..|+++.++|||||+++++|+|+|.|..||+ ||.|. .+.+
T Consensus 279 -----------~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN----~diPr------~P~~ 337 (442)
T KOG0340|consen 279 -----------VRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVN----HDIPR------DPKD 337 (442)
T ss_pred -----------eeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEe----cCCCC------CHHH
Confidence 34677899999999999999999999999999999999999999999999 77666 7889
Q ss_pred HHHhhhccCCCCCCCceEEEEEeCCCcHHHHH
Q 000756 864 IMQMLGRAGRPQYDSYGEGIIITGHSELRYYL 895 (1300)
Q Consensus 864 ~lQr~GRAGR~g~d~~G~~iil~~~~~~~~y~ 895 (1300)
|+||+||+.|+| +.|.++.|.++.+.+...
T Consensus 338 yiHRvGRtARAG--R~G~aiSivt~rDv~l~~ 367 (442)
T KOG0340|consen 338 YIHRVGRTARAG--RKGMAISIVTQRDVELLQ 367 (442)
T ss_pred HHHhhcchhccc--CCcceEEEechhhHHHHH
Confidence 999999999998 899999999977765443
No 40
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.8e-40 Score=349.33 Aligned_cols=333 Identities=20% Similarity=0.293 Sum_probs=272.4
Q ss_pred ChhhHhhc-CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHH
Q 000756 483 PEWAQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561 (1300)
Q Consensus 483 p~~~~~~f-~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~ka 561 (1300)
++.+...| .||..|.|+|.+++|.++.+ .++|.-|..|+|||-+|.+|++..+... ......++++|||+
T Consensus 94 r~LLmgIfe~G~ekPSPiQeesIPiaLtG-rdiLaRaKNGTGKT~a~~IP~Lekid~~--------~~~IQ~~ilVPtre 164 (459)
T KOG0326|consen 94 RELLMGIFEKGFEKPSPIQEESIPIALTG-RDILARAKNGTGKTAAYCIPVLEKIDPK--------KNVIQAIILVPTRE 164 (459)
T ss_pred HHHHHHHHHhccCCCCCccccccceeecc-hhhhhhccCCCCCccceechhhhhcCcc--------ccceeEEEEeecch
Confidence 45566677 89999999999999999877 5599999999999999999999987653 23457899999999
Q ss_pred HHHHHHHHHhhhcccCCcEEEEEeCCCccchhhh---ccceEEEECcchHHHHHhhcCCCcccccccEEEEeccccccc-
Q 000756 562 LVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQI---EETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD- 637 (1300)
Q Consensus 562 La~q~~~~~~~~l~~~gi~V~~ltGd~~~~~~~~---~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d- 637 (1300)
||-|..+.+++..+.+|++|...||+.++.+..+ ...+++|+||++...+..+.. ..++....+|+|||+.|.+
T Consensus 165 lALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgV--a~ls~c~~lV~DEADKlLs~ 242 (459)
T KOG0326|consen 165 LALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGV--ADLSDCVILVMDEADKLLSV 242 (459)
T ss_pred hhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhccc--ccchhceEEEechhhhhhch
Confidence 9999999999988899999999999998877543 467999999999644544443 4678899999999999987
Q ss_pred CChhHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccC-ceEEecCCcccccceeeEeeeecCchhHHH
Q 000756 638 NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEK-GLFYFDNSYRPVPLSQQYIGIQVKKPLQRF 716 (1300)
Q Consensus 638 ~rg~~le~iv~rl~~~~~~~~~~~riV~LSATlpn~~dva~~L~~~~~~-~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~ 716 (1300)
++++.++.++..+ ++..|++++|||+|. -|..|+.....+ ...+.-....+..+.|+|..+.+.. +.
T Consensus 243 ~F~~~~e~li~~l-------P~~rQillySATFP~--tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~q---Kv 310 (459)
T KOG0326|consen 243 DFQPIVEKLISFL-------PKERQILLYSATFPL--TVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEERQ---KV 310 (459)
T ss_pred hhhhHHHHHHHhC-------CccceeeEEecccch--hHHHHHHHhccCcceeehhhhhhhcchhhheeeechhh---hh
Confidence 7999999888754 788999999999996 456666543222 1233444555666777776666543 33
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCC
Q 000756 717 QLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYG 796 (1300)
Q Consensus 717 ~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~g 796 (1300)
..+ +.+.....-+|.||||||.+.++-+|+.+.+++. .
T Consensus 311 hCL-----ntLfskLqINQsIIFCNS~~rVELLAkKITelGy-------------------------------------s 348 (459)
T KOG0326|consen 311 HCL-----NTLFSKLQINQSIIFCNSTNRVELLAKKITELGY-------------------------------------S 348 (459)
T ss_pred hhH-----HHHHHHhcccceEEEeccchHhHHHHHHHHhccc-------------------------------------h
Confidence 333 3344444568999999999999999999988763 3
Q ss_pred eEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCCCC
Q 000756 797 FAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQY 876 (1300)
Q Consensus 797 v~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~ 876 (1300)
..+.|+.|.+++|+.|+..|++|.++.||||+.+.+|||+++++|||+ ||.++ +...|+||+||+||-|
T Consensus 349 cyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVIN----FDfpk------~aEtYLHRIGRsGRFG- 417 (459)
T KOG0326|consen 349 CYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVIN----FDFPK------NAETYLHRIGRSGRFG- 417 (459)
T ss_pred hhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEe----cCCCC------CHHHHHHHccCCccCC-
Confidence 456699999999999999999999999999999999999999999999 99887 8999999999999965
Q ss_pred CCceEEEEEeCCCcHH
Q 000756 877 DSYGEGIIITGHSELR 892 (1300)
Q Consensus 877 d~~G~~iil~~~~~~~ 892 (1300)
..|.+|-+.+.++..
T Consensus 418 -hlGlAInLityedrf 432 (459)
T KOG0326|consen 418 -HLGLAINLITYEDRF 432 (459)
T ss_pred -CcceEEEEEehhhhh
Confidence 899999988776643
No 41
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=8.1e-39 Score=362.53 Aligned_cols=345 Identities=20% Similarity=0.282 Sum_probs=277.0
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHH
Q 000756 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1300)
Q Consensus 491 ~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~ 570 (1300)
.+|..++.||+++|+.++.+.+ +|..|.||||||++|+.|++..+....-. ..++.-+|+|.|||+||.|++..+
T Consensus 87 ~~fv~~teiQ~~~Ip~aL~G~D-vlGAAkTGSGKTLAFlvPvlE~L~r~kWs----~~DGlGalIISPTRELA~QtFevL 161 (758)
T KOG0343|consen 87 AKFVKMTEIQRDTIPMALQGHD-VLGAAKTGSGKTLAFLVPVLEALYRLKWS----PTDGLGALIISPTRELALQTFEVL 161 (758)
T ss_pred cCCccHHHHHHhhcchhccCcc-cccccccCCCceeeehHHHHHHHHHcCCC----CCCCceeEEecchHHHHHHHHHHH
Confidence 5789999999999999999865 99999999999999999999999875432 235667999999999999999999
Q ss_pred hhhcccCCcEEEEEeCCCccch--hhhccceEEEECcchH-HHHHhhcCCCcccccccEEEEeccccccc-CChhHHHHH
Q 000756 571 SNRLQMYDVKVRELSGDQTLTR--QQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESI 646 (1300)
Q Consensus 571 ~~~l~~~gi~V~~ltGd~~~~~--~~~~~~~IIV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~i 646 (1300)
.+..+..+.+.+.+.|+..... ..+.+.+|+||||+++ .++-.... ....++.++|+|||+.+.| ++..+++.|
T Consensus 162 ~kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~--f~t~~lQmLvLDEADR~LDMGFk~tL~~I 239 (758)
T KOG0343|consen 162 NKVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPN--FSTSNLQMLVLDEADRMLDMGFKKTLNAI 239 (758)
T ss_pred HHHhhccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCC--CCCCcceEEEeccHHHHHHHhHHHHHHHH
Confidence 9988888899999999887544 3467899999999985 33333322 3456789999999999998 688888888
Q ss_pred HHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEE--e--cCCcccccceeeEeeeecCchhHHHHHHHHH
Q 000756 647 VARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFY--F--DNSYRPVPLSQQYIGIQVKKPLQRFQLMNDL 722 (1300)
Q Consensus 647 v~rl~~~~~~~~~~~riV~LSATlpn~~dva~~L~~~~~~~~~~--f--~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~ 722 (1300)
+..+ +...|.+++|||-.. .+++..+.......|. . ...-.|..|.|.|+.++....+. .
T Consensus 240 i~~l-------P~~RQTLLFSATqt~--svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~-------~ 303 (758)
T KOG0343|consen 240 IENL-------PKKRQTLLFSATQTK--SVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKID-------M 303 (758)
T ss_pred HHhC-------Chhheeeeeecccch--hHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHH-------H
Confidence 8754 778899999999653 4555544432222221 1 22446788999999888765433 3
Q ss_pred HHHHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecC
Q 000756 723 CYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHA 802 (1300)
Q Consensus 723 ~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Ha 802 (1300)
+|..+..+. ..++|||++|.+++..++..++.+.+. ..+..+||
T Consensus 304 L~sFI~shl-k~K~iVF~SscKqvkf~~e~F~rlrpg-----------------------------------~~l~~L~G 347 (758)
T KOG0343|consen 304 LWSFIKSHL-KKKSIVFLSSCKQVKFLYEAFCRLRPG-----------------------------------IPLLALHG 347 (758)
T ss_pred HHHHHHhcc-ccceEEEEehhhHHHHHHHHHHhcCCC-----------------------------------Cceeeecc
Confidence 455555544 678999999999999999988876422 23566799
Q ss_pred CCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCCCCCCceEE
Q 000756 803 GMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEG 882 (1300)
Q Consensus 803 gl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d~~G~~ 882 (1300)
+|++..|..|...|-...--||+||++++||+|+|+|++||. ||.|. .+.+|+||+||+.|. ...|++
T Consensus 348 ~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ----~DCPe------dv~tYIHRvGRtAR~--~~~G~s 415 (758)
T KOG0343|consen 348 TMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQ----VDCPE------DVDTYIHRVGRTARY--KERGES 415 (758)
T ss_pred chhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEE----ecCch------hHHHHHHHhhhhhcc--cCCCce
Confidence 999999999999999989999999999999999999999998 88765 789999999999994 599999
Q ss_pred EEEeCCCcHHHHHHhhcC-CCCccc
Q 000756 883 IIITGHSELRYYLSLMNQ-QLPIES 906 (1300)
Q Consensus 883 iil~~~~~~~~y~~ll~~-~lPiES 906 (1300)
+++.++++.+++...+.. .+|++.
T Consensus 416 ll~L~psEeE~~l~~Lq~k~I~i~~ 440 (758)
T KOG0343|consen 416 LLMLTPSEEEAMLKKLQKKKIPIKE 440 (758)
T ss_pred EEEEcchhHHHHHHHHHHcCCCHHh
Confidence 999999997777665554 477653
No 42
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.1e-37 Score=394.97 Aligned_cols=410 Identities=17% Similarity=0.209 Sum_probs=280.5
Q ss_pred HHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcc-cCCcEEE
Q 000756 504 YKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVR 582 (1300)
Q Consensus 504 i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~-~~gi~V~ 582 (1300)
|-.++.++.+++++||||||||+++.++++..... +.+|+|++|+|.+|.|++.++.+.+. ..|..|+
T Consensus 10 i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~-----------~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VG 78 (819)
T TIGR01970 10 LRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGI-----------GGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVG 78 (819)
T ss_pred HHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhcc-----------CCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEE
Confidence 33455677889999999999999999999987521 34899999999999999999976554 4566777
Q ss_pred EEeCCCccchhhhccceEEEECcchHHHHHhhcCCCcccccccEEEEecccc-ccc-CChhHHHHHHHHHHHHHhhccCC
Q 000756 583 ELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL-LHD-NRGPVLESIVARTVRQIETTKEH 660 (1300)
Q Consensus 583 ~ltGd~~~~~~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~-l~d-~rg~~le~iv~rl~~~~~~~~~~ 660 (1300)
...+.... ....++|+|+||+.+....+. ...++.+++|||||+|+ ..+ +.+.. ++..+ ....+.+
T Consensus 79 y~vr~~~~---~s~~t~I~v~T~G~Llr~l~~---d~~L~~v~~VIiDEaHER~L~~Dl~L~---ll~~i---~~~lr~d 146 (819)
T TIGR01970 79 YRVRGENK---VSRRTRLEVVTEGILTRMIQD---DPELDGVGALIFDEFHERSLDADLGLA---LALDV---QSSLRED 146 (819)
T ss_pred EEEccccc---cCCCCcEEEECCcHHHHHHhh---CcccccCCEEEEeccchhhhccchHHH---HHHHH---HHhcCCC
Confidence 65554321 124689999999975333322 34688999999999996 332 33221 11111 1224568
Q ss_pred eeEEEEcccCCChHHHHHHHhccccCceEEecCCcccccceeeEeeeecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEE
Q 000756 661 IRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFV 740 (1300)
Q Consensus 661 ~riV~LSATlpn~~dva~~L~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv 740 (1300)
.|+|+||||+++ ..+..|++..+ ++. ...+..|+++.|........ ....+...+...+ .. ..+++||||
T Consensus 147 lqlIlmSATl~~-~~l~~~l~~~~---vI~--~~gr~~pVe~~y~~~~~~~~--~~~~v~~~l~~~l-~~-~~g~iLVFl 216 (819)
T TIGR01970 147 LKILAMSATLDG-ERLSSLLPDAP---VVE--SEGRSFPVEIRYLPLRGDQR--LEDAVSRAVEHAL-AS-ETGSILVFL 216 (819)
T ss_pred ceEEEEeCCCCH-HHHHHHcCCCc---EEE--ecCcceeeeeEEeecchhhh--HHHHHHHHHHHHH-Hh-cCCcEEEEE
Confidence 999999999975 45778875322 222 23345566666655432211 1111222222222 21 257899999
Q ss_pred cChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHHHHHHHhCCC
Q 000756 741 HSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGH 820 (1300)
Q Consensus 741 ~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~ 820 (1300)
+++.++..++..|.+... ..+.|..+||+|+..+|..+++.|++|.
T Consensus 217 pg~~eI~~l~~~L~~~~~----------------------------------~~~~v~pLHg~L~~~eq~~~~~~~~~G~ 262 (819)
T TIGR01970 217 PGQAEIRRVQEQLAERLD----------------------------------SDVLICPLYGELSLAAQDRAIKPDPQGR 262 (819)
T ss_pred CCHHHHHHHHHHHHhhcC----------------------------------CCcEEEEecCCCCHHHHHHHHhhcccCC
Confidence 999999999998875321 0134788999999999999999999999
Q ss_pred ccEEEeccccccccCCCCcEEEEecc----eeccCCCCC----cccCCHHHHHHhhhccCCCCCCCceEEEEEeCCCcHH
Q 000756 821 VQVLVSTATLAWGVNLPAHTVIIKGT----QIYNPEKGA----WTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR 892 (1300)
Q Consensus 821 i~VLVaT~tla~GVdlPav~vVI~~t----~~yd~~~g~----~~~~S~~d~lQr~GRAGR~g~d~~G~~iil~~~~~~~ 892 (1300)
.+|||||+++++|||||++++||++. ..||+..|. ..++|..++.||+|||||. ..|.||.+++..+..
T Consensus 263 rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~~~~ 339 (819)
T TIGR01970 263 RKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEEQHQ 339 (819)
T ss_pred eEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHHHHH
Confidence 99999999999999999999999974 357877663 3678999999999999997 599999999875433
Q ss_pred HHHHhhcCCCCcccchhHhHHHHHHHHHHhccccCHHHHHHHHHhhHHHHHHhcCCcccCCCccccccchhhhhHHHHHH
Q 000756 893 YYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLV 972 (1300)
Q Consensus 893 ~y~~ll~~~lPiES~l~~~l~d~lnaEI~~g~i~~~~d~~~wL~~T~ly~r~~~nP~~y~~~~~~~~~~~~l~~~~~~li 972 (1300)
.+.....| ||....+.+. ++....|- ..+|.. -+.+..+....+
T Consensus 340 ---~l~~~~~P---------------EI~r~~L~~~--~L~l~~~g------~~~~~~----------~~~l~~P~~~~i 383 (819)
T TIGR01970 340 ---RLPAQDEP---------------EILQADLSGL--ALELAQWG------AKDPSD----------LRWLDAPPSVAL 383 (819)
T ss_pred ---hhhcCCCc---------------ceeccCcHHH--HHHHHHcC------CCChhh----------CCCCCCcCHHHH
Confidence 23222222 2221111100 11111000 011111 122334445678
Q ss_pred HHHHHHHHHCCCccccccCCceeeccccccccccccccccHHHHHhhcCCCC
Q 000756 973 HTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTM 1024 (1300)
Q Consensus 973 ~~a~~~L~~~~~i~~~~~~~~~~~T~lG~ias~~yi~~~T~~~~~~~l~~~~ 1024 (1300)
..|+..|...|+|+.+ | .+|++|+.+|.++++|...+++.......+
T Consensus 384 ~~a~~~L~~lgald~~---~--~lT~~G~~~~~lp~~p~l~~~ll~~~~~~~ 430 (819)
T TIGR01970 384 AAARQLLQRLGALDAQ---G--RLTAHGKAMAALGCHPRLAAMLLSAHSTGL 430 (819)
T ss_pred HHHHHHHHHCCCCCCC---C--CcCHHHHHHHhcCCCHHHHHHHHHhhhcCC
Confidence 9999999999999743 2 589999999999999999999987655444
No 43
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.2e-38 Score=330.02 Aligned_cols=337 Identities=19% Similarity=0.318 Sum_probs=263.2
Q ss_pred hhhHhhc-CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHH
Q 000756 484 EWAQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (1300)
Q Consensus 484 ~~~~~~f-~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaL 562 (1300)
+.++..| .||+.|..||+.|++.++.+. ++++.|..|+|||..|-+.+++.+.-. .....+++++|||+|
T Consensus 37 dlLrgiY~yGfekPS~IQqrAi~~IlkGr-dViaQaqSGTGKTa~~si~vlq~~d~~--------~r~tQ~lilsPTREL 107 (400)
T KOG0328|consen 37 DLLRGIYAYGFEKPSAIQQRAIPQILKGR-DVIAQAQSGTGKTATFSISVLQSLDIS--------VRETQALILSPTREL 107 (400)
T ss_pred HHHHHHHHhccCCchHHHhhhhhhhhccc-ceEEEecCCCCceEEEEeeeeeecccc--------cceeeEEEecChHHH
Confidence 4556666 799999999999999999885 599999999999999988888776543 234579999999999
Q ss_pred HHHHHHHHhhhcccCCcEEEEEeCCCccchhh---hccceEEEECcch-HHHHHhhcCCCcccccccEEEEeccccccc-
Q 000756 563 VAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEK-WDIITRKSGDRTYTQLVKLLIIDEIHLLHD- 637 (1300)
Q Consensus 563 a~q~~~~~~~~l~~~gi~V~~ltGd~~~~~~~---~~~~~IIV~TPek-ld~l~r~~~~~~~l~~v~liIiDEaH~l~d- 637 (1300)
|.|+.+.+.....++|+.+..+.|+.++.... -.+.+++.+||++ +|++.|+.. ....++++|+||++.|.+
T Consensus 108 a~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L---~tr~vkmlVLDEaDemL~k 184 (400)
T KOG0328|consen 108 AVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSL---RTRAVKMLVLDEADEMLNK 184 (400)
T ss_pred HHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccc---cccceeEEEeccHHHHHHh
Confidence 99999999998889999999999988765422 2478999999999 588877664 456799999999999887
Q ss_pred CChhHHHHHHHHHHHHHhhccCCeeEEEEcccCCC-hHHHHHHHhccccCceEEecCCcccccceeeEeeeecCchhHHH
Q 000756 638 NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRF 716 (1300)
Q Consensus 638 ~rg~~le~iv~rl~~~~~~~~~~~riV~LSATlpn-~~dva~~L~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~ 716 (1300)
+++..+-.+.. ..++..|+|++|||+|. ..+..+++..+|. .++.-.....--.++++|+.+... ..++
T Consensus 185 gfk~Qiydiyr-------~lp~~~Qvv~~SATlp~eilemt~kfmtdpv-rilvkrdeltlEgIKqf~v~ve~E--ewKf 254 (400)
T KOG0328|consen 185 GFKEQIYDIYR-------YLPPGAQVVLVSATLPHEILEMTEKFMTDPV-RILVKRDELTLEGIKQFFVAVEKE--EWKF 254 (400)
T ss_pred hHHHHHHHHHH-------hCCCCceEEEEeccCcHHHHHHHHHhcCCce-eEEEecCCCchhhhhhheeeechh--hhhH
Confidence 45555444433 35889999999999985 2334445544442 233322222223466777765533 2344
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCC
Q 000756 717 QLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYG 796 (1300)
Q Consensus 717 ~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~g 796 (1300)
..+.+ +|+. ..-.|++|||+|++.+..+.+.+++.. +.
T Consensus 255 dtLcd-LYd~----LtItQavIFcnTk~kVdwLtekm~~~n-------------------------------------ft 292 (400)
T KOG0328|consen 255 DTLCD-LYDT----LTITQAVIFCNTKRKVDWLTEKMREAN-------------------------------------FT 292 (400)
T ss_pred hHHHH-Hhhh----hehheEEEEecccchhhHHHHHHHhhC-------------------------------------ce
Confidence 44443 2332 335799999999999988877776543 34
Q ss_pred eEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCCCC
Q 000756 797 FAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQY 876 (1300)
Q Consensus 797 v~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~ 876 (1300)
|...||.|.+++|+.+++.|++|+.+||++|++.++|+|+|.+..||+ ||.|. ....|+||+||+||-|
T Consensus 293 VssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviN----YDLP~------nre~YIHRIGRSGRFG- 361 (400)
T KOG0328|consen 293 VSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVIN----YDLPN------NRELYIHRIGRSGRFG- 361 (400)
T ss_pred eeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEe----cCCCc------cHHHHhhhhccccccC-
Confidence 677899999999999999999999999999999999999999999999 88765 5688999999999955
Q ss_pred CCceEEEEEeCCCcHHHHHH
Q 000756 877 DSYGEGIIITGHSELRYYLS 896 (1300)
Q Consensus 877 d~~G~~iil~~~~~~~~y~~ 896 (1300)
+.|.++-|...++...|+.
T Consensus 362 -RkGvainFVk~~d~~~lrd 380 (400)
T KOG0328|consen 362 -RKGVAINFVKSDDLRILRD 380 (400)
T ss_pred -CcceEEEEecHHHHHHHHH
Confidence 9999999999988776654
No 44
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=6.4e-37 Score=383.69 Aligned_cols=335 Identities=20% Similarity=0.298 Sum_probs=244.9
Q ss_pred ccCCCCChhhHhhcCCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEE
Q 000756 477 IKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYV 556 (1300)
Q Consensus 477 ~~i~~Lp~~~~~~f~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~i 556 (1300)
.+...++..+.+...||..|+|+|.++++.++++ ++++++||||+|||++|++|++.. ...+|||
T Consensus 7 ~~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g-~dvlv~apTGsGKTl~y~lpal~~--------------~g~tlVi 71 (607)
T PRK11057 7 LNLESLAKQVLQETFGYQQFRPGQQEIIDAVLSG-RDCLVVMPTGGGKSLCYQIPALVL--------------DGLTLVV 71 (607)
T ss_pred CCchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcC-CCEEEEcCCCchHHHHHHHHHHHc--------------CCCEEEE
Confidence 3444454444444458999999999999999876 569999999999999999998743 1258999
Q ss_pred cCcHHHHHHHHHHHhhhcccCCcEEEEEeCCCccchhh-------hccceEEEECcchHH--HHHhhcCCCcccccccEE
Q 000756 557 APMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWD--IITRKSGDRTYTQLVKLL 627 (1300)
Q Consensus 557 aP~kaLa~q~~~~~~~~l~~~gi~V~~ltGd~~~~~~~-------~~~~~IIV~TPekld--~l~r~~~~~~~l~~v~li 627 (1300)
+|+++|+.|++..++.. |+.+..+.+........ ....+++++|||++. .+.... ....+++|
T Consensus 72 sPl~sL~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l----~~~~l~~i 143 (607)
T PRK11057 72 SPLISLMKDQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHL----AHWNPALL 143 (607)
T ss_pred ecHHHHHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHH----hhCCCCEE
Confidence 99999999999988753 77777777765433211 135789999999862 222221 23468999
Q ss_pred EEeccccccc---CChhHHHHHHHHHHHHHhhccCCeeEEEEcccCCCh--HHHHHHHhccccCceEEecCCccccccee
Q 000756 628 IIDEIHLLHD---NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY--EDVALFLRVNLEKGLFYFDNSYRPVPLSQ 702 (1300)
Q Consensus 628 IiDEaH~l~d---~rg~~le~iv~rl~~~~~~~~~~~riV~LSATlpn~--~dva~~L~~~~~~~~~~f~~~~rpv~l~~ 702 (1300)
||||||++.+ ++.+.+..+ ..+ ....+.+++++||||+++. .++..+++.. ..........||. +.
T Consensus 144 VIDEaH~i~~~G~~fr~~y~~L-~~l----~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~--~~~~~~~~~~r~n-l~- 214 (607)
T PRK11057 144 AVDEAHCISQWGHDFRPEYAAL-GQL----RQRFPTLPFMALTATADDTTRQDIVRLLGLN--DPLIQISSFDRPN-IR- 214 (607)
T ss_pred EEeCccccccccCcccHHHHHH-HHH----HHhCCCCcEEEEecCCChhHHHHHHHHhCCC--CeEEEECCCCCCc-ce-
Confidence 9999999875 244444332 222 2234578899999998864 3566666543 2233333333442 21
Q ss_pred eEeeeecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhh
Q 000756 703 QYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTD 782 (1300)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~ 782 (1300)
+..+.... .... +...+. ...+.++||||+|++.|+.++..|...+
T Consensus 215 -~~v~~~~~---~~~~----l~~~l~-~~~~~~~IIFc~tr~~~e~la~~L~~~g------------------------- 260 (607)
T PRK11057 215 -YTLVEKFK---PLDQ----LMRYVQ-EQRGKSGIIYCNSRAKVEDTAARLQSRG------------------------- 260 (607)
T ss_pred -eeeeeccc---hHHH----HHHHHH-hcCCCCEEEEECcHHHHHHHHHHHHhCC-------------------------
Confidence 11111111 1111 122222 2346799999999999999999887643
Q ss_pred cccchhhhhhhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHH
Q 000756 783 MVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPL 862 (1300)
Q Consensus 783 ~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~ 862 (1300)
..++.+||+|+..+|..+++.|+.|.++|||||+++++|||+|++++||+ |+++. |..
T Consensus 261 ------------~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~----~d~P~------s~~ 318 (607)
T PRK11057 261 ------------ISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVH----FDIPR------NIE 318 (607)
T ss_pred ------------CCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEE----eCCCC------CHH
Confidence 34788999999999999999999999999999999999999999999998 88776 899
Q ss_pred HHHHhhhccCCCCCCCceEEEEEeCCCcHHHHHHhhcCC
Q 000756 863 DIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQ 901 (1300)
Q Consensus 863 d~lQr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~ 901 (1300)
+|+||+|||||.| ..|.|+++++..+...+..++...
T Consensus 319 ~y~Qr~GRaGR~G--~~~~~ill~~~~d~~~~~~~~~~~ 355 (607)
T PRK11057 319 SYYQETGRAGRDG--LPAEAMLFYDPADMAWLRRCLEEK 355 (607)
T ss_pred HHHHHhhhccCCC--CCceEEEEeCHHHHHHHHHHHhcC
Confidence 9999999999998 789999999999888888877654
No 45
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=3e-37 Score=387.85 Aligned_cols=327 Identities=20% Similarity=0.268 Sum_probs=243.9
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHH
Q 000756 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1300)
Q Consensus 491 ~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~ 570 (1300)
.||.+|+|+|.++++.++.++ +++++||||+|||+||++|++.. +..+|||+|+++|+.|++..+
T Consensus 9 fg~~~fr~~Q~~~i~~il~g~-dvlv~~PTG~GKTl~y~lpal~~--------------~g~~lVisPl~sL~~dq~~~l 73 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHVLDGR-DVLVVMPTGGGKSLCYQVPALLL--------------KGLTVVISPLISLMKDQVDQL 73 (591)
T ss_pred cCCCCCCHHHHHHHHHHHcCC-CEEEEcCCCccHhHHHHHHHHHc--------------CCcEEEEcCCHHHHHHHHHHH
Confidence 479999999999999999875 69999999999999999998732 125899999999999999988
Q ss_pred hhhcccCCcEEEEEeCCCccchhh-------hccceEEEECcchHH--HHHhhcCCCcccccccEEEEecccccccCChh
Q 000756 571 SNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWD--IITRKSGDRTYTQLVKLLIIDEIHLLHDNRGP 641 (1300)
Q Consensus 571 ~~~l~~~gi~V~~ltGd~~~~~~~-------~~~~~IIV~TPekld--~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~ 641 (1300)
+. +|+.+..++|+....... ....+|+++|||++. .+.+. .....+++|||||||++.+ +|.
T Consensus 74 ~~----~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~----l~~~~l~~iViDEaH~i~~-~g~ 144 (591)
T TIGR01389 74 RA----AGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNM----LQRIPIALVAVDEAHCVSQ-WGH 144 (591)
T ss_pred HH----cCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHH----HhcCCCCEEEEeCCccccc-ccC
Confidence 76 378888888876544321 246789999999862 22222 1235789999999999864 233
Q ss_pred HHHHHHHHHHHHHhhccCCeeEEEEcccCCC--hHHHHHHHhccccCceEEecCCcccccceeeEeeeecCchhHHHHHH
Q 000756 642 VLESIVARTVRQIETTKEHIRLVGLSATLPN--YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLM 719 (1300)
Q Consensus 642 ~le~iv~rl~~~~~~~~~~~riV~LSATlpn--~~dva~~L~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~ 719 (1300)
.+...+.++....... +..+++++|||.+. ..++..+++... ...++.+..||. +. +....... ...
T Consensus 145 ~frp~y~~l~~l~~~~-~~~~vi~lTAT~~~~~~~~i~~~l~~~~--~~~~~~~~~r~n-l~--~~v~~~~~---~~~-- 213 (591)
T TIGR01389 145 DFRPEYQRLGSLAERF-PQVPRIALTATADAETRQDIRELLRLAD--ANEFITSFDRPN-LR--FSVVKKNN---KQK-- 213 (591)
T ss_pred ccHHHHHHHHHHHHhC-CCCCEEEEEeCCCHHHHHHHHHHcCCCC--CCeEecCCCCCC-cE--EEEEeCCC---HHH--
Confidence 3333333333322332 34559999999875 346788887642 222333333442 22 22112111 111
Q ss_pred HHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEE
Q 000756 720 NDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAI 799 (1300)
Q Consensus 720 ~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~ 799 (1300)
.+.+.+... .+.++||||+|++.|+.++..|...+ ..++.
T Consensus 214 --~l~~~l~~~-~~~~~IIf~~sr~~~e~la~~L~~~g-------------------------------------~~~~~ 253 (591)
T TIGR01389 214 --FLLDYLKKH-RGQSGIIYASSRKKVEELAERLESQG-------------------------------------ISALA 253 (591)
T ss_pred --HHHHHHHhc-CCCCEEEEECcHHHHHHHHHHHHhCC-------------------------------------CCEEE
Confidence 122223322 26789999999999999999886532 34688
Q ss_pred ecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCCCCCCc
Q 000756 800 HHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSY 879 (1300)
Q Consensus 800 ~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d~~ 879 (1300)
|||+|+..+|..+++.|..|.++|||||+++++|||+|++++||+ |+++. |..+|+||+|||||.| ..
T Consensus 254 ~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~----~~~p~------s~~~y~Q~~GRaGR~G--~~ 321 (591)
T TIGR01389 254 YHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIH----YDMPG------NLESYYQEAGRAGRDG--LP 321 (591)
T ss_pred EECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEE----cCCCC------CHHHHhhhhccccCCC--CC
Confidence 999999999999999999999999999999999999999999998 88876 8999999999999987 78
Q ss_pred eEEEEEeCCCcHHHHHHhhcCCCCc
Q 000756 880 GEGIIITGHSELRYYLSLMNQQLPI 904 (1300)
Q Consensus 880 G~~iil~~~~~~~~y~~ll~~~lPi 904 (1300)
|.|+++++..+...+..++....|-
T Consensus 322 ~~~il~~~~~d~~~~~~~i~~~~~~ 346 (591)
T TIGR01389 322 AEAILLYSPADIALLKRRIEQSEAD 346 (591)
T ss_pred ceEEEecCHHHHHHHHHHHhccCCc
Confidence 9999999999988888888765553
No 46
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=4.5e-37 Score=390.34 Aligned_cols=409 Identities=19% Similarity=0.216 Sum_probs=280.3
Q ss_pred HHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcc-cCCcEEEE
Q 000756 505 KSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVRE 583 (1300)
Q Consensus 505 ~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~-~~gi~V~~ 583 (1300)
-.++.++.+++++||||||||+++.++++..... ..+|+|++|+|.+|.|++.++.+.++ ..|..|+.
T Consensus 14 ~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~-----------~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy 82 (812)
T PRK11664 14 LTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI-----------NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGY 82 (812)
T ss_pred HHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc-----------CCeEEEECChHHHHHHHHHHHHHHhCcccCceEEE
Confidence 3445666789999999999999999999865311 23799999999999999999976654 45778887
Q ss_pred EeCCCccchhhhccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeE
Q 000756 584 LSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRL 663 (1300)
Q Consensus 584 ltGd~~~~~~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~ri 663 (1300)
.++...... ..++|+|+||+.+..+... ...++.+++|||||+|...-. ...++.-+.......+.+.|+
T Consensus 83 ~vr~~~~~~---~~t~I~v~T~G~Llr~l~~---d~~L~~v~~IIlDEaHER~l~----~Dl~L~ll~~i~~~lr~~lql 152 (812)
T PRK11664 83 RMRAESKVG---PNTRLEVVTEGILTRMIQR---DPELSGVGLVILDEFHERSLQ----ADLALALLLDVQQGLRDDLKL 152 (812)
T ss_pred EecCccccC---CCCcEEEEChhHHHHHHhh---CCCcCcCcEEEEcCCCccccc----cchHHHHHHHHHHhCCccceE
Confidence 776543221 3578999999986433332 246889999999999973211 111111111222334678999
Q ss_pred EEEcccCCChHHHHHHHhccccCceEEecCCcccccceeeEeeeecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEEcCh
Q 000756 664 VGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSR 743 (1300)
Q Consensus 664 V~LSATlpn~~dva~~L~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr 743 (1300)
|+||||++. ..+..|+... .++. ...+..|++++|......... ...+...+...+ .. ..+++||||+++
T Consensus 153 ilmSATl~~-~~l~~~~~~~---~~I~--~~gr~~pV~~~y~~~~~~~~~--~~~v~~~l~~~l-~~-~~g~iLVFlpg~ 222 (812)
T PRK11664 153 LIMSATLDN-DRLQQLLPDA---PVIV--SEGRSFPVERRYQPLPAHQRF--DEAVARATAELL-RQ-ESGSLLLFLPGV 222 (812)
T ss_pred EEEecCCCH-HHHHHhcCCC---CEEE--ecCccccceEEeccCchhhhH--HHHHHHHHHHHH-Hh-CCCCEEEEcCCH
Confidence 999999965 4677777532 1222 233455677777654332211 111112222222 21 258999999999
Q ss_pred HHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHHHHHHHhCCCccE
Q 000756 744 KETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQV 823 (1300)
Q Consensus 744 ~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~V 823 (1300)
.++..++..|...... ...+..+||+|+..+|..++..|++|..+|
T Consensus 223 ~ei~~l~~~L~~~~~~----------------------------------~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkV 268 (812)
T PRK11664 223 GEIQRVQEQLASRVAS----------------------------------DVLLCPLYGALSLAEQQKAILPAPAGRRKV 268 (812)
T ss_pred HHHHHHHHHHHHhccC----------------------------------CceEEEeeCCCCHHHHHHHhccccCCCeEE
Confidence 9999999998753100 134778999999999999999999999999
Q ss_pred EEeccccccccCCCCcEEEEecc----eeccCCCCCc----ccCCHHHHHHhhhccCCCCCCCceEEEEEeCCCcHHHHH
Q 000756 824 LVSTATLAWGVNLPAHTVIIKGT----QIYNPEKGAW----TELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYL 895 (1300)
Q Consensus 824 LVaT~tla~GVdlPav~vVI~~t----~~yd~~~g~~----~~~S~~d~lQr~GRAGR~g~d~~G~~iil~~~~~~~~y~ 895 (1300)
||||+++++|||||++++||+.. ..||+..|.. .++|..++.||+|||||. ..|.||.+++..+. .
T Consensus 269 lvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~~---~ 342 (812)
T PRK11664 269 VLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQA---E 342 (812)
T ss_pred EEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHHH---h
Confidence 99999999999999999999964 4588887742 578999999999999997 49999999986543 3
Q ss_pred HhhcCCCCcccchhHhHHHHHHHHHHhccccCHHHHHHHHHhhHHHHHHhcCCcccCCCccccccchhhhhHHHHHHHHH
Q 000756 896 SLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTA 975 (1300)
Q Consensus 896 ~ll~~~lPiES~l~~~l~d~lnaEI~~g~i~~~~d~~~wL~~T~ly~r~~~nP~~y~~~~~~~~~~~~l~~~~~~li~~a 975 (1300)
.+.....| | -+...|...+..-...| +. +|. .-+.|..+....+..|
T Consensus 343 ~l~~~~~P-E-I~r~dL~~~~L~l~~~g-~~--------------------~~~----------~~~~ld~P~~~~~~~A 389 (812)
T PRK11664 343 RAAAQSEP-E-ILHSDLSGLLLELLQWG-CH--------------------DPA----------QLSWLDQPPAAALAAA 389 (812)
T ss_pred hCccCCCC-c-eeccchHHHHHHHHHcC-CC--------------------CHH----------hCCCCCCCCHHHHHHH
Confidence 33333333 1 01111211111111111 11 111 1123334445678999
Q ss_pred HHHHHHCCCccccccCCceeeccccccccccccccccHHHHHhhcCC
Q 000756 976 ATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKP 1022 (1300)
Q Consensus 976 ~~~L~~~~~i~~~~~~~~~~~T~lG~ias~~yi~~~T~~~~~~~l~~ 1022 (1300)
+..|...|+|+.+ | .+|++|+.||.++++|.-.+++..+...
T Consensus 390 ~~~L~~lgald~~---g--~lT~~G~~m~~lp~~Prla~~ll~a~~~ 431 (812)
T PRK11664 390 KRLLQQLGALDGQ---G--RLTARGRKMAALGNDPRLAAMLVAAKED 431 (812)
T ss_pred HHHHHHCCCCCCC---C--CcCHHHHHHHhcCCchHHHHHHHHHHhc
Confidence 9999999999743 2 5899999999999999999999876543
No 47
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-37 Score=357.49 Aligned_cols=346 Identities=22% Similarity=0.281 Sum_probs=259.5
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCC--CCcEEEEEc
Q 000756 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNH--SNYKIVYVA 557 (1300)
Q Consensus 482 Lp~~~~~~f--~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~--~~~kiv~ia 557 (1300)
+++.+.... .++..|||||+.+++.+..++ .+++||+||||||.+|++|++..+............ ..+.+++++
T Consensus 81 l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Gr-dl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIla 159 (482)
T KOG0335|consen 81 LGEALAGNIKRSGYTKPTPVQKYSIPIISGGR-DLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILA 159 (482)
T ss_pred hhHHHhhccccccccCCCcceeeccceeecCC-ceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEe
Confidence 444444433 689999999999999887765 599999999999999999999998876442211111 248999999
Q ss_pred CcHHHHHHHHHHHhhhcccCCcEEEEEeCCCccchhh---hccceEEEECcchH-HHHHhhcCCCcccccccEEEEeccc
Q 000756 558 PMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIH 633 (1300)
Q Consensus 558 P~kaLa~q~~~~~~~~l~~~gi~V~~ltGd~~~~~~~---~~~~~IIV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH 633 (1300)
|||+||.|++.+.++.....++++...+|+.+...+. ..+++|+||||+++ +.+.++. ..++.++++|+|||+
T Consensus 160 pTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~---i~l~~~k~~vLDEAD 236 (482)
T KOG0335|consen 160 PTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGK---ISLDNCKFLVLDEAD 236 (482)
T ss_pred CcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcce---eehhhCcEEEecchH
Confidence 9999999999999998877789999999986655432 36899999999998 5555544 367889999999999
Q ss_pred cccc--CChhHHHHHHHHHHHHHhhccCCeeEEEEcccCCCh-H-HHHHHHhccccCceEEecC--CcccccceeeEeee
Q 000756 634 LLHD--NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY-E-DVALFLRVNLEKGLFYFDN--SYRPVPLSQQYIGI 707 (1300)
Q Consensus 634 ~l~d--~rg~~le~iv~rl~~~~~~~~~~~riV~LSATlpn~-~-dva~~L~~~~~~~~~~f~~--~~rpv~l~~~~~~~ 707 (1300)
.|.| .|+|.+..|+.++- +......+.+++|||+|.. . ..+.|+..+ .++.-.. .-.+..+.|.+..+
T Consensus 237 rMlD~mgF~p~Ir~iv~~~~---~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~---yi~laV~rvg~~~~ni~q~i~~V 310 (482)
T KOG0335|consen 237 RMLDEMGFEPQIRKIVEQLG---MPPKNNRQTLLFSATFPKEIQRLAADFLKDN---YIFLAVGRVGSTSENITQKILFV 310 (482)
T ss_pred HhhhhccccccHHHHhcccC---CCCccceeEEEEeccCChhhhhhHHHHhhcc---ceEEEEeeeccccccceeEeeee
Confidence 9998 59999998887652 1123578899999999852 1 223333321 2222111 11233455666666
Q ss_pred ecCchhHHHHHHHHHHHHHHHHHhC-----CCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhh
Q 000756 708 QVKKPLQRFQLMNDLCYEKVVAVAG-----KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTD 782 (1300)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~ 782 (1300)
........ +.+++.. ...... ...++|||.+++.|..++..|......
T Consensus 311 ~~~~kr~~---Lldll~~-~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~----------------------- 363 (482)
T KOG0335|consen 311 NEMEKRSK---LLDLLNK-DDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYP----------------------- 363 (482)
T ss_pred cchhhHHH---HHHHhhc-ccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCC-----------------------
Confidence 55432221 1111111 110111 238999999999999999999876533
Q ss_pred cccchhhhhhhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHH
Q 000756 783 MVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPL 862 (1300)
Q Consensus 783 ~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~ 862 (1300)
.-.+|+..++.+|...++.|++|.+.|||||+++++|+|+|+|++||+ ||.+. ...
T Consensus 364 --------------~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVIn----yDmP~------d~d 419 (482)
T KOG0335|consen 364 --------------AKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVIN----YDMPA------DID 419 (482)
T ss_pred --------------ceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEE----eecCc------chh
Confidence 344599999999999999999999999999999999999999999998 99876 688
Q ss_pred HHHHhhhccCCCCCCCceEEEEEeCCCc
Q 000756 863 DIMQMLGRAGRPQYDSYGEGIIITGHSE 890 (1300)
Q Consensus 863 d~lQr~GRAGR~g~d~~G~~iil~~~~~ 890 (1300)
+|+||+||+||.| ..|.++.|+....
T Consensus 420 ~YvHRIGRTGR~G--n~G~atsf~n~~~ 445 (482)
T KOG0335|consen 420 DYVHRIGRTGRVG--NGGRATSFFNEKN 445 (482)
T ss_pred hHHHhccccccCC--CCceeEEEecccc
Confidence 9999999999998 8999999998443
No 48
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-36 Score=343.72 Aligned_cols=375 Identities=20% Similarity=0.284 Sum_probs=265.0
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCC---CCCCCCc--EEE
Q 000756 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDG---SFNHSNY--KIV 554 (1300)
Q Consensus 482 Lp~~~~~~f--~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g---~~~~~~~--kiv 554 (1300)
||..+..++ .||..|++||+.++|.|..+.-++|..|.||||||++|-+||+..+....+... ......+ -.+
T Consensus 188 lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~L 267 (731)
T KOG0347|consen 188 LPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIAL 267 (731)
T ss_pred CCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeE
Confidence 455555554 799999999999999999997889999999999999999999996554322110 0111233 499
Q ss_pred EEcCcHHHHHHHHHHHhhhcccCCcEEEEEeCCCccchhhh---ccceEEEECcch-HHHHHhhcCCCcccccccEEEEe
Q 000756 555 YVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQI---EETQIIVTTPEK-WDIITRKSGDRTYTQLVKLLIID 630 (1300)
Q Consensus 555 ~iaP~kaLa~q~~~~~~~~l~~~gi~V~~ltGd~~~~~~~~---~~~~IIV~TPek-ld~l~r~~~~~~~l~~v~liIiD 630 (1300)
+++|||+||.|+.+.+.......+++|..++|+....+++. ..++|+|+||++ |.++.........+..++++|+|
T Consensus 268 V~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlD 347 (731)
T KOG0347|consen 268 VVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLD 347 (731)
T ss_pred EecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEc
Confidence 99999999999999999988888999999999998777652 578999999999 67666655445567889999999
Q ss_pred ccccccc-CChhHHHHHHHHHHHHHhhccCCeeEEEEcccCCChH--HHHHHHhccccC-----ceE--EecCCcccccc
Q 000756 631 EIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYE--DVALFLRVNLEK-----GLF--YFDNSYRPVPL 700 (1300)
Q Consensus 631 EaH~l~d-~rg~~le~iv~rl~~~~~~~~~~~riV~LSATlpn~~--dva~~L~~~~~~-----~~~--~f~~~~rpv~l 700 (1300)
|++.|.. +.-..+..++..+. -++.....|.+.+|||+.-.. .+..--...... .+- .-.-.+|.-|
T Consensus 348 EaDRmvekghF~Els~lL~~L~--e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kp- 424 (731)
T KOG0347|consen 348 EADRMVEKGHFEELSKLLKHLN--EEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKP- 424 (731)
T ss_pred cHHHHhhhccHHHHHHHHHHhh--hhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCCC-
Confidence 9999976 45555666665543 133455678999999986211 011100000000 000 0000011111
Q ss_pred eeeEeeeecCchhHHHHHHHHH------------HHHHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccc
Q 000756 701 SQQYIGIQVKKPLQRFQLMNDL------------CYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLK 768 (1300)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~------------~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~ 768 (1300)
.++..+.... ....+.+. +|-.+. .. .+.+|||||+...+.+++-.|......
T Consensus 425 --kiiD~t~q~~--ta~~l~Es~I~C~~~eKD~ylyYfl~-ry-PGrTlVF~NsId~vKRLt~~L~~L~i~--------- 489 (731)
T KOG0347|consen 425 --KIIDLTPQSA--TASTLTESLIECPPLEKDLYLYYFLT-RY-PGRTLVFCNSIDCVKRLTVLLNNLDIP--------- 489 (731)
T ss_pred --eeEecCcchh--HHHHHHHHhhcCCccccceeEEEEEe-ec-CCceEEEechHHHHHHHHHHHhhcCCC---------
Confidence 1121111110 01111110 000011 11 578999999999999999888765422
Q ss_pred cCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEeccee
Q 000756 769 EDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQI 848 (1300)
Q Consensus 769 ~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~ 848 (1300)
-..+||.|.+..|-..++.|++..--|||||+++|||+|||+|.+||+
T Consensus 490 ----------------------------p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIH---- 537 (731)
T KOG0347|consen 490 ----------------------------PLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIH---- 537 (731)
T ss_pred ----------------------------CchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEE----
Confidence 234599999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcccCCHHHHHHhhhccCCCCCCCceEEEEEeCCCcHHHHHHhhc-----C---CCCcccchhHhHHH
Q 000756 849 YNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMN-----Q---QLPIESQFVSKLAD 914 (1300)
Q Consensus 849 yd~~~g~~~~~S~~d~lQr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~-----~---~lPiES~l~~~l~d 914 (1300)
|..|+ +..-|+||.||+.|++ ..|..+.+|.+.+...|.++.. + -+||+..++..+.+
T Consensus 538 YqVPr------tseiYVHRSGRTARA~--~~Gvsvml~~P~e~~~~~KL~ktL~k~~dlpifPv~~~~m~~lke 603 (731)
T KOG0347|consen 538 YQVPR------TSEIYVHRSGRTARAN--SEGVSVMLCGPQEVGPLKKLCKTLKKKEDLPIFPVETDIMDALKE 603 (731)
T ss_pred eecCC------ccceeEeccccccccc--CCCeEEEEeChHHhHHHHHHHHHHhhccCCCceeccHHHHHHHHH
Confidence 77665 6677999999999987 8999999999999988887632 1 25676666654443
No 49
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-35 Score=324.73 Aligned_cols=335 Identities=19% Similarity=0.304 Sum_probs=249.4
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHH
Q 000756 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1300)
Q Consensus 491 ~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~ 570 (1300)
.||..|+|||++++|.+|.+.+ ++.+|.||+|||++|+++-+-++.......+ ...++.+|+++||++|+.|+....
T Consensus 238 ~GFqKPtPIqSQaWPI~LQG~D-liGVAQTgtgKtL~~L~pg~ihi~aqp~~~~--qr~~p~~lvl~ptreLalqie~e~ 314 (629)
T KOG0336|consen 238 TGFQKPTPIQSQAWPILLQGID-LIGVAQTGTGKTLAFLLPGFIHIDAQPKRRE--QRNGPGVLVLTPTRELALQIEGEV 314 (629)
T ss_pred ccCCCCCcchhcccceeecCcc-eEEEEecCCCcCHHHhccceeeeeccchhhh--ccCCCceEEEeccHHHHHHHHhHH
Confidence 6899999999999999988755 9999999999999999987766544322222 234678999999999999998887
Q ss_pred hhhcccCCcEEEEEeCCCccchh---hhccceEEEECcchHHHHHhhcCCCcccccccEEEEeccccccc-CChhHHHHH
Q 000756 571 SNRLQMYDVKVRELSGDQTLTRQ---QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESI 646 (1300)
Q Consensus 571 ~~~l~~~gi~V~~ltGd~~~~~~---~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~i 646 (1300)
++. ...|.+..++.|+.+...+ ...+..||++||++|.-|.-... ..+..+.++|+|||+.|.| ++.|.+..|
T Consensus 315 ~ky-syng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~--i~l~siTYlVlDEADrMLDMgFEpqIrki 391 (629)
T KOG0336|consen 315 KKY-SYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNV--INLASITYLVLDEADRMLDMGFEPQIRKI 391 (629)
T ss_pred hHh-hhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCe--eeeeeeEEEEecchhhhhcccccHHHHHH
Confidence 653 4457777777777655443 23578999999999854443332 4677899999999999999 577776665
Q ss_pred HHHHHHHHhhccCCeeEEEEcccCCC-hHHHH-HHHhccccCceEEecCCcccc---cceeeEeeeecCchhHHHHHHHH
Q 000756 647 VARTVRQIETTKEHIRLVGLSATLPN-YEDVA-LFLRVNLEKGLFYFDNSYRPV---PLSQQYIGIQVKKPLQRFQLMND 721 (1300)
Q Consensus 647 v~rl~~~~~~~~~~~riV~LSATlpn-~~dva-~~L~~~~~~~~~~f~~~~rpv---~l~~~~~~~~~~~~~~~~~~~~~ 721 (1300)
+-. ..++.++|+.|||.|. ...++ .|+. ..+..+..+.--+ .+.|.++...+. .++..+..
T Consensus 392 lld-------iRPDRqtvmTSATWP~~VrrLa~sY~K----ep~~v~vGsLdL~a~~sVkQ~i~v~~d~---~k~~~~~~ 457 (629)
T KOG0336|consen 392 LLD-------IRPDRQTVMTSATWPEGVRRLAQSYLK----EPMIVYVGSLDLVAVKSVKQNIIVTTDS---EKLEIVQF 457 (629)
T ss_pred hhh-------cCCcceeeeecccCchHHHHHHHHhhh----CceEEEecccceeeeeeeeeeEEecccH---HHHHHHHH
Confidence 543 3678899999999996 22333 3443 2344444433222 234444322222 22322222
Q ss_pred HHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEec
Q 000756 722 LCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHH 801 (1300)
Q Consensus 722 ~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~H 801 (1300)
.+.......++||||.++..|..+...|+-.+... -.+|
T Consensus 458 ----f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~-------------------------------------q~lH 496 (629)
T KOG0336|consen 458 ----FVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISS-------------------------------------QSLH 496 (629)
T ss_pred ----HHHhcCCCceEEEEEechhhhhhccchhhhcccch-------------------------------------hhcc
Confidence 23344557899999999887776666655433222 2359
Q ss_pred CCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCCCCCCceE
Q 000756 802 AGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGE 881 (1300)
Q Consensus 802 agl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d~~G~ 881 (1300)
|+-.+.||+..++.|++|.++|||||+++++|+|+|++++|++ ||.+. .+.+|+||+||+||+| +.|.
T Consensus 497 G~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~N----yDFP~------nIeeYVHRvGrtGRaG--r~G~ 564 (629)
T KOG0336|consen 497 GNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYN----YDFPR------NIEEYVHRVGRTGRAG--RTGT 564 (629)
T ss_pred CChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeec----cCCCc------cHHHHHHHhcccccCC--CCcc
Confidence 9999999999999999999999999999999999999999999 99886 7999999999999998 9999
Q ss_pred EEEEeCCCcHHHHHHhh
Q 000756 882 GIIITGHSELRYYLSLM 898 (1300)
Q Consensus 882 ~iil~~~~~~~~y~~ll 898 (1300)
++.+.+..+......++
T Consensus 565 sis~lt~~D~~~a~eLI 581 (629)
T KOG0336|consen 565 SISFLTRNDWSMAEELI 581 (629)
T ss_pred eEEEEehhhHHHHHHHH
Confidence 99999988876665543
No 50
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.8e-35 Score=318.22 Aligned_cols=341 Identities=19% Similarity=0.275 Sum_probs=259.6
Q ss_pred ChhhHhhc-CCCCCCCHHHHHHHHHHHcC-CCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcH
Q 000756 483 PEWAQPAF-KGMTQLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMK 560 (1300)
Q Consensus 483 p~~~~~~f-~g~~~ln~iQ~~~i~~~l~~-~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~k 560 (1300)
|+.+...+ -+|..|+.||..++|.++.. ..|++..+..|+|||.+|.|++|..+... ...+.++||+|+|
T Consensus 99 Pellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~--------~~~PQ~iCLaPtr 170 (477)
T KOG0332|consen 99 PELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD--------VVVPQCICLAPTR 170 (477)
T ss_pred HHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc--------ccCCCceeeCchH
Confidence 66666666 68999999999999998865 57999999999999999999999876542 2356789999999
Q ss_pred HHHHHHHHHHhhhcccCCcEEEEEeCCCccchhhhccceEEEECcchH-HHHHhhcCCCcccccccEEEEecccccccCC
Q 000756 561 ALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHDNR 639 (1300)
Q Consensus 561 aLa~q~~~~~~~~l~~~gi~V~~ltGd~~~~~~~~~~~~IIV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH~l~d~r 639 (1300)
+||.|+.+.+.+..+..++++....-+....+...-..+|+|+||+.+ |...+-.. ..++.++.+|+|||+.+.+.+
T Consensus 171 ELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~--id~~kikvfVlDEAD~Mi~tq 248 (477)
T KOG0332|consen 171 ELAPQTGEVVEEMGKFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKC--IDLEKIKVFVLDEADVMIDTQ 248 (477)
T ss_pred HHHHHHHHHHHHhcCceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHHh--hChhhceEEEecchhhhhhcc
Confidence 999999999999877777888877777655444444678999999996 55444121 356789999999999998755
Q ss_pred hhHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhcc-c-cCceEEecCCcccccceeeEeeeecCchhHHHH
Q 000756 640 GPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN-L-EKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQ 717 (1300)
Q Consensus 640 g~~le~iv~rl~~~~~~~~~~~riV~LSATlpn~~dva~~L~~~-~-~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~ 717 (1300)
|..=. -.++. ...++..+++.+|||.. +.++.|...- + .+.++.-.....--++.|.++.+... ..+++
T Consensus 249 G~~D~--S~rI~---~~lP~~~QllLFSATf~--e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~--~~K~~ 319 (477)
T KOG0332|consen 249 GFQDQ--SIRIM---RSLPRNQQLLLFSATFV--EKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACR--DDKYQ 319 (477)
T ss_pred ccccc--chhhh---hhcCCcceEEeeechhH--HHHHHHHHHhcCCCceeeeehhhccccchhhheeeccch--hhHHH
Confidence 42211 12222 33567899999999975 4555554321 1 22233333333344566666655543 34455
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCe
Q 000756 718 LMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGF 797 (1300)
Q Consensus 718 ~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv 797 (1300)
.+.+ +|. ...-++.||||++++.+..++..++..+ +.|
T Consensus 320 ~l~~-lyg----~~tigqsiIFc~tk~ta~~l~~~m~~~G-------------------------------------h~V 357 (477)
T KOG0332|consen 320 ALVN-LYG----LLTIGQSIIFCHTKATAMWLYEEMRAEG-------------------------------------HQV 357 (477)
T ss_pred HHHH-HHh----hhhhhheEEEEeehhhHHHHHHHHHhcC-------------------------------------cee
Confidence 5444 333 2235799999999999999999988765 458
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCCCCC
Q 000756 798 AIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD 877 (1300)
Q Consensus 798 ~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d 877 (1300)
..+||.|.-.+|..+.+.|+.|.-+|||+|+++|||||++.+++||+ ||.+...-..-....|+||+||+||-|
T Consensus 358 ~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvN----ydlP~~~~~~pD~etYlHRiGRtGRFG-- 431 (477)
T KOG0332|consen 358 SLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVN----YDLPVKYTGEPDYETYLHRIGRTGRFG-- 431 (477)
T ss_pred EEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEe----cCCccccCCCCCHHHHHHHhccccccc--
Confidence 88999999999999999999999999999999999999999999999 665544334468899999999999955
Q ss_pred CceEEEEEeCCCc
Q 000756 878 SYGEGIIITGHSE 890 (1300)
Q Consensus 878 ~~G~~iil~~~~~ 890 (1300)
+.|.++-+....+
T Consensus 432 kkG~a~n~v~~~~ 444 (477)
T KOG0332|consen 432 KKGLAINLVDDKD 444 (477)
T ss_pred ccceEEEeecccC
Confidence 9999999887655
No 51
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=1.3e-34 Score=371.71 Aligned_cols=441 Identities=17% Similarity=0.177 Sum_probs=279.7
Q ss_pred HHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcc-cCCcEE
Q 000756 503 VYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKV 581 (1300)
Q Consensus 503 ~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~-~~gi~V 581 (1300)
.|..++.+++.++|+|+||||||+.....++. ... | ...+|++..|+|-.|.+++.++.+.+. .+|-.|
T Consensus 81 ~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle-~g~-----g----~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~V 150 (1294)
T PRK11131 81 DILEAIRDHQVVIVAGETGSGKTTQLPKICLE-LGR-----G----VKGLIGHTQPRRLAARTVANRIAEELETELGGCV 150 (1294)
T ss_pred HHHHHHHhCCeEEEECCCCCCHHHHHHHHHHH-cCC-----C----CCCceeeCCCcHHHHHHHHHHHHHHHhhhhccee
Confidence 44455677788999999999999964433322 111 1 123688889987666666666555444 234444
Q ss_pred EEEeCCCccchhhhccceEEEECcchHHHHHhhcCCCcccccccEEEEecccc-cccCChhHHHHHHHHHHHHHhhccCC
Q 000756 582 RELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL-LHDNRGPVLESIVARTVRQIETTKEH 660 (1300)
Q Consensus 582 ~~ltGd~~~~~~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~-l~d~rg~~le~iv~rl~~~~~~~~~~ 660 (1300)
+.-+ ..+.+...+++|+|+||+.+...... ...++.+++|||||||+ ..+. +-.+ .++.++ ....++
T Consensus 151 GY~v---rf~~~~s~~t~I~v~TpG~LL~~l~~---d~~Ls~~~~IIIDEAHERsLn~-DfLL-g~Lk~l----L~~rpd 218 (1294)
T PRK11131 151 GYKV---RFNDQVSDNTMVKLMTDGILLAEIQQ---DRLLMQYDTIIIDEAHERSLNI-DFIL-GYLKEL----LPRRPD 218 (1294)
T ss_pred ceee---cCccccCCCCCEEEEChHHHHHHHhc---CCccccCcEEEecCcccccccc-chHH-HHHHHh----hhcCCC
Confidence 3322 22223335789999999975322222 24689999999999995 3321 1111 122222 223457
Q ss_pred eeEEEEcccCCChHHHHHHHhccccCceEEecCCcccccceeeEeeeecCch---hHHHHHHHHHHHHHHHHHhCCCeEE
Q 000756 661 IRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKP---LQRFQLMNDLCYEKVVAVAGKHQVL 737 (1300)
Q Consensus 661 ~riV~LSATlpn~~dva~~L~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~vL 737 (1300)
.|+|+||||+ +.+.+++++...+ ++...+ +..|+++.|........ ...+..+...+.. +. ..+.+++|
T Consensus 219 lKvILmSATi-d~e~fs~~F~~ap---vI~V~G--r~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~-l~-~~~~GdIL 290 (1294)
T PRK11131 219 LKVIITSATI-DPERFSRHFNNAP---IIEVSG--RTYPVEVRYRPIVEEADDTERDQLQAIFDAVDE-LG-REGPGDIL 290 (1294)
T ss_pred ceEEEeeCCC-CHHHHHHHcCCCC---EEEEcC--ccccceEEEeecccccchhhHHHHHHHHHHHHH-Hh-cCCCCCEE
Confidence 8999999998 4678888876432 344443 33455666654432211 1112222211111 11 22367899
Q ss_pred EEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHHHHHHHh
Q 000756 738 IFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFG 817 (1300)
Q Consensus 738 VFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~ 817 (1300)
|||+++.++..++..|...... ...|..+||+|+..+|..+++.
T Consensus 291 VFLpg~~EIe~lae~L~~~~~~----------------------------------~~~VlpLhg~Ls~~eQ~~Vf~~-- 334 (1294)
T PRK11131 291 IFMSGEREIRDTADALNKLNLR----------------------------------HTEILPLYARLSNSEQNRVFQS-- 334 (1294)
T ss_pred EEcCCHHHHHHHHHHHHhcCCC----------------------------------cceEeecccCCCHHHHHHHhcc--
Confidence 9999999999999988764211 0236778999999999999886
Q ss_pred CCCccEEEeccccccccCCCCcEEEEecc----eeccCCCCC----cccCCHHHHHHhhhccCCCCCCCceEEEEEeCCC
Q 000756 818 DGHVQVLVSTATLAWGVNLPAHTVIIKGT----QIYNPEKGA----WTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS 889 (1300)
Q Consensus 818 ~g~i~VLVaT~tla~GVdlPav~vVI~~t----~~yd~~~g~----~~~~S~~d~lQr~GRAGR~g~d~~G~~iil~~~~ 889 (1300)
.|..+|||||+++++|||+|++++||+.. ..||+..+. ..++|..+|.||+|||||.+ .|.||.+++..
T Consensus 335 ~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~---~G~c~rLyte~ 411 (1294)
T PRK11131 335 HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVS---EGICIRLYSED 411 (1294)
T ss_pred cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCCC---CcEEEEeCCHH
Confidence 57899999999999999999999999963 568887652 35688999999999999984 89999999865
Q ss_pred cHHHHHHhhcCCCCcccchhHhHHHHHHHHHHhccccCHHHHHHHHHhhHHHHHHhcCCcccCCCccccccchhhhhHHH
Q 000756 890 ELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRA 969 (1300)
Q Consensus 890 ~~~~y~~ll~~~lPiES~l~~~l~d~lnaEI~~g~i~~~~d~~~wL~~T~ly~r~~~nP~~y~~~~~~~~~~~~l~~~~~ 969 (1300)
+ |..+- ++...||....+.+ .+ |....+ |+.. +..-+.+..+..
T Consensus 412 d---~~~~~---------------~~~~PEIlR~~L~~---vi-------L~lk~l------gl~d--i~~F~fldpP~~ 455 (1294)
T PRK11131 412 D---FLSRP---------------EFTDPEILRTNLAS---VI-------LQMTAL------GLGD--IAAFPFVEAPDK 455 (1294)
T ss_pred H---HHhhh---------------cccCCccccCCHHH---HH-------HHHHHc------CCCC--cceeeCCCCCCH
Confidence 4 33221 11222332221111 11 111111 1111 011133444556
Q ss_pred HHHHHHHHHHHHCCCccccccCCceeeccccccccccccccccHHHHHhhcCCCCChHHHHHHhcCCcccccCcCCchHH
Q 000756 970 DLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEK 1049 (1300)
Q Consensus 970 ~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~ias~~yi~~~T~~~~~~~l~~~~~~~~il~ils~s~EF~~i~vR~~E~ 1049 (1300)
+.|..|+..|...|+|+.++.++...+|++|+.+|.+|++|...+++..+....|. .+++.|.|+-+ ..+..+|..++
T Consensus 456 ~~i~~al~~L~~LgAld~~~~~~~~~LT~lG~~la~LPldPrlakmLl~a~~~~c~-~evl~IaA~Ls-v~dpf~~p~~~ 533 (1294)
T PRK11131 456 RNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQKHGCV-REVMIITSALS-IQDPRERPMDK 533 (1294)
T ss_pred HHHHHHHHHHHHCCCCCccccCCCccCcHHHHHHHhCCCChHHHHHHHHhhhcCCH-HHHHHHHHHHc-CCCcccCCchh
Confidence 77999999999999998654334568999999999999999999999988776665 45554443322 23444555544
Q ss_pred H
Q 000756 1050 M 1050 (1300)
Q Consensus 1050 ~ 1050 (1300)
.
T Consensus 534 ~ 534 (1294)
T PRK11131 534 Q 534 (1294)
T ss_pred H
Confidence 4
No 52
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7e-35 Score=328.38 Aligned_cols=345 Identities=23% Similarity=0.316 Sum_probs=250.0
Q ss_pred CCCCCCCHHHHHHHHHHHcC--------CCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHH
Q 000756 491 KGMTQLNRVQSRVYKSALSS--------ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (1300)
Q Consensus 491 ~g~~~ln~iQ~~~i~~~l~~--------~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaL 562 (1300)
.+++.+.|+|.++++.++.. ..++.|.||||||||++|.+||++.+.... .+..++|+|+|++.|
T Consensus 155 ~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~-------v~~LRavVivPtr~L 227 (620)
T KOG0350|consen 155 MAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRP-------VKRLRAVVIVPTREL 227 (620)
T ss_pred hhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCC-------ccceEEEEEeeHHHH
Confidence 46789999999999998642 346999999999999999999999997642 234799999999999
Q ss_pred HHHHHHHHhhhcccCCcEEEEEeCCCccchhhh--------ccceEEEECcchH-HHHHhhcCCCcccccccEEEEeccc
Q 000756 563 VAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQI--------EETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIH 633 (1300)
Q Consensus 563 a~q~~~~~~~~l~~~gi~V~~ltGd~~~~~~~~--------~~~~IIV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH 633 (1300)
+.|+++.|.++....|+.|+.++|..++.++.. ...+|+|+||++| |+|....+ ..+++++++|||||+
T Consensus 228 ~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~--f~Lk~LrfLVIDEAD 305 (620)
T KOG0350|consen 228 ALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKS--FDLKHLRFLVIDEAD 305 (620)
T ss_pred HHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCC--cchhhceEEEechHH
Confidence 999999999999999999999999988776532 1348999999997 77764322 568899999999999
Q ss_pred cccc-CChhHHHHHHHHH------------HHHHh---------------hccCCeeEEEEcccCCC-hHHHHHHHhccc
Q 000756 634 LLHD-NRGPVLESIVART------------VRQIE---------------TTKEHIRLVGLSATLPN-YEDVALFLRVNL 684 (1300)
Q Consensus 634 ~l~d-~rg~~le~iv~rl------------~~~~~---------------~~~~~~riV~LSATlpn-~~dva~~L~~~~ 684 (1300)
+|.+ .+...+..++..+ +++.. ...++...+.+||||.. +..+.++--..|
T Consensus 306 Rll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~P 385 (620)
T KOG0350|consen 306 RLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIP 385 (620)
T ss_pred HHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCC
Confidence 9986 3333333322221 11100 01223335677777753 344444332222
Q ss_pred cCceEEec----CCcc-cccceeeEeeeecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhc
Q 000756 685 EKGLFYFD----NSYR-PVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALE 759 (1300)
Q Consensus 685 ~~~~~~f~----~~~r-pv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~ 759 (1300)
.++... ..|+ |..+.+..+.....-. -..+|. +.......++|+|++|...+.+++..|.-....
T Consensus 386 --rl~~v~~~~~~ryslp~~l~~~~vv~~~~~k-------pl~~~~-lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~ 455 (620)
T KOG0350|consen 386 --RLFHVSKPLIGRYSLPSSLSHRLVVTEPKFK-------PLAVYA-LITSNKLNRTLCFVNSVSSANRLAHVLKVEFCS 455 (620)
T ss_pred --ceEEeecccceeeecChhhhhceeecccccc-------hHhHHH-HHHHhhcceEEEEecchHHHHHHHHHHHHHhcc
Confidence 122222 1222 2233333333222110 011233 233334679999999999999999988732211
Q ss_pred ccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCc
Q 000756 760 NDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAH 839 (1300)
Q Consensus 760 ~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav 839 (1300)
. ...+..+.|+++...|...++.|+.|.++|||||++++||+|+-++
T Consensus 456 ~---------------------------------~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v 502 (620)
T KOG0350|consen 456 D---------------------------------NFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDV 502 (620)
T ss_pred c---------------------------------cchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCccccc
Confidence 0 0223446899999999999999999999999999999999999999
Q ss_pred EEEEecceeccCCCCCcccCCHHHHHHhhhccCCCCCCCceEEEEEeCCCcHHHHHHhhc
Q 000756 840 TVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMN 899 (1300)
Q Consensus 840 ~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~ 899 (1300)
++||+ ||||. +...|+||+||++|+| ..|.||.+....+...|.+++.
T Consensus 503 ~~VIN----Yd~P~------~~ktyVHR~GRTARAg--q~G~a~tll~~~~~r~F~klL~ 550 (620)
T KOG0350|consen 503 DNVIN----YDPPA------SDKTYVHRAGRTARAG--QDGYAITLLDKHEKRLFSKLLK 550 (620)
T ss_pred ceEee----cCCCc------hhhHHHHhhccccccc--CCceEEEeeccccchHHHHHHH
Confidence 99999 99886 8999999999999998 8899999999988888887765
No 53
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=4.1e-34 Score=368.82 Aligned_cols=440 Identities=17% Similarity=0.177 Sum_probs=285.7
Q ss_pred HHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcccCCcEE
Q 000756 502 RVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKV 581 (1300)
Q Consensus 502 ~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~~gi~V 581 (1300)
..|..++.+++.++|+|+||||||+.....++.. .. + ...+|+++.|+|-.|..++.++.+.+ |..+
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~---~~---~----~~~~I~~tQPRRlAA~svA~RvA~el---g~~l 139 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTTQLPKICLEL---GR---G----SHGLIGHTQPRRLAARTVAQRIAEEL---GTPL 139 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHc---CC---C----CCceEecCCccHHHHHHHHHHHHHHh---CCCc
Confidence 3444566777889999999999999766555432 11 1 13479999999999999998887765 4445
Q ss_pred EEEeCC-CccchhhhccceEEEECcchHHHHHhhcCCCcccccccEEEEecccc-cccCChhHHHHHHHHHHHHHhhccC
Q 000756 582 RELSGD-QTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL-LHDNRGPVLESIVARTVRQIETTKE 659 (1300)
Q Consensus 582 ~~ltGd-~~~~~~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~-l~d~rg~~le~iv~rl~~~~~~~~~ 659 (1300)
+...|. ...+.+...++.|+|+||+.+ ++.......++.+++|||||+|. ..+ ...++..+.. +....+
T Consensus 140 G~~VGY~vR~~~~~s~~T~I~~~TdGiL---Lr~l~~d~~L~~~~~IIIDEaHERsL~-----~D~LL~lLk~-il~~rp 210 (1283)
T TIGR01967 140 GEKVGYKVRFHDQVSSNTLVKLMTDGIL---LAETQQDRFLSRYDTIIIDEAHERSLN-----IDFLLGYLKQ-LLPRRP 210 (1283)
T ss_pred ceEEeeEEcCCcccCCCceeeeccccHH---HHHhhhCcccccCcEEEEcCcchhhcc-----chhHHHHHHH-HHhhCC
Confidence 555553 233333345789999999964 33333335789999999999995 322 1222222222 222346
Q ss_pred CeeEEEEcccCCChHHHHHHHhccccCceEEecCCcccccceeeEeeeecCc---hhHHHHHHHHHHHHHHHHHhCCCeE
Q 000756 660 HIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKK---PLQRFQLMNDLCYEKVVAVAGKHQV 736 (1300)
Q Consensus 660 ~~riV~LSATlpn~~dva~~L~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~v 736 (1300)
+.|+|+||||+ +.+.++++++..+ ++...+ |..|+...|....... .......+...+... .. ...+++
T Consensus 211 dLKlIlmSATl-d~~~fa~~F~~ap---vI~V~G--r~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l-~~-~~~GdI 282 (1283)
T TIGR01967 211 DLKIIITSATI-DPERFSRHFNNAP---IIEVSG--RTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDEL-FA-EGPGDI 282 (1283)
T ss_pred CCeEEEEeCCc-CHHHHHHHhcCCC---EEEECC--CcccceeEEecccccccchhhhHHHHHHHHHHHH-Hh-hCCCCE
Confidence 88999999998 4678888886432 344433 4445555554432211 111222222222221 11 135799
Q ss_pred EEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHHHHHHH
Q 000756 737 LIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLF 816 (1300)
Q Consensus 737 LVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F 816 (1300)
|||++++.++..++..|...... ...|..+||+|+.++|..+++.+
T Consensus 283 LVFLpg~~EI~~l~~~L~~~~~~----------------------------------~~~VlpLhg~Ls~~eQ~~vf~~~ 328 (1283)
T TIGR01967 283 LIFLPGEREIRDAAEILRKRNLR----------------------------------HTEILPLYARLSNKEQQRVFQPH 328 (1283)
T ss_pred EEeCCCHHHHHHHHHHHHhcCCC----------------------------------CcEEEeccCCCCHHHHHHHhCCC
Confidence 99999999999999988754211 12367889999999999986544
Q ss_pred hCCCccEEEeccccccccCCCCcEEEEecc----eeccCCCCC----cccCCHHHHHHhhhccCCCCCCCceEEEEEeCC
Q 000756 817 GDGHVQVLVSTATLAWGVNLPAHTVIIKGT----QIYNPEKGA----WTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (1300)
Q Consensus 817 ~~g~i~VLVaT~tla~GVdlPav~vVI~~t----~~yd~~~g~----~~~~S~~d~lQr~GRAGR~g~d~~G~~iil~~~ 888 (1300)
+..+|||||+++++|||+|++++||+.. ..||+..|- ..++|..+|.||.|||||.+ .|.||.+++.
T Consensus 329 --~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte 403 (1283)
T TIGR01967 329 --SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSE 403 (1283)
T ss_pred --CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCH
Confidence 3479999999999999999999999964 568877663 25789999999999999986 9999999986
Q ss_pred CcHHHHHHhhcCCCCcccchhHhHHHHHHHHHHhccccCHHHHHHHHHhhHHHHHHhcCCcccCCCccccccchhhhhHH
Q 000756 889 SELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERR 968 (1300)
Q Consensus 889 ~~~~~y~~ll~~~lPiES~l~~~l~d~lnaEI~~g~i~~~~d~~~wL~~T~ly~r~~~nP~~y~~~~~~~~~~~~l~~~~ 968 (1300)
.+.. .+..... +||....+. .+ .|.... .|+.. +..-+.+..+.
T Consensus 404 ~~~~---~~~~~~~---------------PEIlR~~L~---~v-------iL~l~~------lg~~d--i~~f~fldpP~ 447 (1283)
T TIGR01967 404 EDFN---SRPEFTD---------------PEILRTNLA---SV-------ILQMLA------LRLGD--IAAFPFIEAPD 447 (1283)
T ss_pred HHHH---hhhhccC---------------cccccccHH---HH-------HHHHHh------cCCCC--cccccCCCCCC
Confidence 5432 2211111 222221111 11 111110 11111 11123444555
Q ss_pred HHHHHHHHHHHHHCCCccccccCCceeeccccccccccccccccHHHHHhhcCCCCChHHHHHHhcCCcccccCcCCchH
Q 000756 969 ADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDE 1048 (1300)
Q Consensus 969 ~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~ias~~yi~~~T~~~~~~~l~~~~~~~~il~ils~s~EF~~i~vR~~E 1048 (1300)
.+.|..|+..|...|+|+.++ +...+|++|+.+|.++++|...+++..+....|. .+++.|.|.-++ .+...|..+
T Consensus 448 ~~~i~~A~~~L~~LGAld~~~--~~~~LT~lGr~ma~LPldPrlarmLl~a~~~gcl-~e~l~IaA~Ls~-~dp~~~p~~ 523 (1283)
T TIGR01967 448 PRAIRDGFRLLEELGALDDDE--AEPQLTPIGRQLAQLPVDPRLARMLLEAHRLGCL-QEVLIIASALSI-QDPRERPME 523 (1283)
T ss_pred HHHHHHHHHHHHHCCCCCCCC--CCccccHHHHHHhhcCCChHHHHHHHHhhhcCCH-HHHHHHHHHHcC-CCcCCCcch
Confidence 677999999999999997543 2367999999999999999999999987766654 445544443322 344444444
Q ss_pred HH
Q 000756 1049 KM 1050 (1300)
Q Consensus 1049 ~~ 1050 (1300)
+.
T Consensus 524 ~~ 525 (1283)
T TIGR01967 524 KQ 525 (1283)
T ss_pred hH
Confidence 33
No 54
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=6.2e-34 Score=364.07 Aligned_cols=311 Identities=20% Similarity=0.260 Sum_probs=228.4
Q ss_pred CCCCCCHHHHHHHHHHHcC-----CCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHH
Q 000756 492 GMTQLNRVQSRVYKSALSS-----ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (1300)
Q Consensus 492 g~~~ln~iQ~~~i~~~l~~-----~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~ 566 (1300)
+| .+|++|.+|++.++.. ..++|+|||||||||.+|+++++..+.. +.+++|++||++||.|+
T Consensus 449 ~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~-----------g~qvlvLvPT~~LA~Q~ 516 (926)
T TIGR00580 449 PF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD-----------GKQVAVLVPTTLLAQQH 516 (926)
T ss_pred CC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh-----------CCeEEEEeCcHHHHHHH
Confidence 56 5999999999999874 2478999999999999999999988764 34799999999999999
Q ss_pred HHHHhhhcccCCcEEEEEeCCCccchhh-------hccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccCC
Q 000756 567 VGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNR 639 (1300)
Q Consensus 567 ~~~~~~~l~~~gi~V~~ltGd~~~~~~~-------~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~r 639 (1300)
+..|++++..+++++..++|......+. ...++|||+||. .+. +. ..++++++|||||+|.++
T Consensus 517 ~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~---ll~-~~---v~f~~L~llVIDEahrfg--- 586 (926)
T TIGR00580 517 FETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHK---LLQ-KD---VKFKDLGLLIIDEEQRFG--- 586 (926)
T ss_pred HHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHH---Hhh-CC---CCcccCCEEEeecccccc---
Confidence 9999999998999999999876543211 135899999995 232 22 356789999999999964
Q ss_pred hhHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCcccccceeeEeeeecCchhHHHHHH
Q 000756 640 GPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLM 719 (1300)
Q Consensus 640 g~~le~iv~rl~~~~~~~~~~~riV~LSATlpn~~dva~~L~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~ 719 (1300)
......+ ......+++++||||+ .+..+...+.......+....+.. ..++...+.... . ..+
T Consensus 587 -v~~~~~L-------~~~~~~~~vL~~SATp-iprtl~~~l~g~~d~s~I~~~p~~-R~~V~t~v~~~~---~----~~i 649 (926)
T TIGR00580 587 -VKQKEKL-------KELRTSVDVLTLSATP-IPRTLHMSMSGIRDLSIIATPPED-RLPVRTFVMEYD---P----ELV 649 (926)
T ss_pred -hhHHHHH-------HhcCCCCCEEEEecCC-CHHHHHHHHhcCCCcEEEecCCCC-ccceEEEEEecC---H----HHH
Confidence 2222222 2235678999999994 445554333221111112211211 223443333221 1 111
Q ss_pred HHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEE
Q 000756 720 NDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAI 799 (1300)
Q Consensus 720 ~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~ 799 (1300)
...+.. +...+++++|||+++..+..++..|..... ...|+.
T Consensus 650 ~~~i~~---el~~g~qv~if~n~i~~~e~l~~~L~~~~p-----------------------------------~~~v~~ 691 (926)
T TIGR00580 650 REAIRR---ELLRGGQVFYVHNRIESIEKLATQLRELVP-----------------------------------EARIAI 691 (926)
T ss_pred HHHHHH---HHHcCCeEEEEECCcHHHHHHHHHHHHhCC-----------------------------------CCeEEE
Confidence 111111 223478999999999999999888875421 135889
Q ss_pred ecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCCCCCCc
Q 000756 800 HHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSY 879 (1300)
Q Consensus 800 ~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d~~ 879 (1300)
+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||. ++++. .+..+|.||+||+||.| ..
T Consensus 692 lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi----~~a~~-----~gls~l~Qr~GRvGR~g--~~ 760 (926)
T TIGR00580 692 AHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIII----ERADK-----FGLAQLYQLRGRVGRSK--KK 760 (926)
T ss_pred ecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEE----ecCCC-----CCHHHHHHHhcCCCCCC--CC
Confidence 999999999999999999999999999999999999999999996 66654 26778999999999987 89
Q ss_pred eEEEEEeCCCc
Q 000756 880 GEGIIITGHSE 890 (1300)
Q Consensus 880 G~~iil~~~~~ 890 (1300)
|.||+++...+
T Consensus 761 g~aill~~~~~ 771 (926)
T TIGR00580 761 AYAYLLYPHQK 771 (926)
T ss_pred eEEEEEECCcc
Confidence 99999987643
No 55
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=1e-33 Score=358.39 Aligned_cols=307 Identities=23% Similarity=0.309 Sum_probs=219.9
Q ss_pred CCCHHHHHHHHHHHcCC-----CeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHH
Q 000756 495 QLNRVQSRVYKSALSSA-----DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (1300)
Q Consensus 495 ~ln~iQ~~~i~~~l~~~-----~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~ 569 (1300)
.||++|.+|++.+..+- .|+|++||||||||.+|+++++..+.. +.+++|++||++||.|+++.
T Consensus 261 ~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~-----------g~q~lilaPT~~LA~Q~~~~ 329 (681)
T PRK10917 261 ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA-----------GYQAALMAPTEILAEQHYEN 329 (681)
T ss_pred CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc-----------CCeEEEEeccHHHHHHHHHH
Confidence 69999999999988752 379999999999999999999988753 45899999999999999999
Q ss_pred HhhhcccCCcEEEEEeCCCccchhh-------hccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccCChhH
Q 000756 570 LSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPV 642 (1300)
Q Consensus 570 ~~~~l~~~gi~V~~ltGd~~~~~~~-------~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~ 642 (1300)
+++.+..+|++|..++|+.+...+. ...++|+|+||+.|. . ...+.++++|||||+|.++...
T Consensus 330 l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~----~---~v~~~~l~lvVIDE~Hrfg~~q--- 399 (681)
T PRK10917 330 LKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQ----D---DVEFHNLGLVIIDEQHRFGVEQ--- 399 (681)
T ss_pred HHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhc----c---cchhcccceEEEechhhhhHHH---
Confidence 9999998999999999998753321 135899999998542 1 1246789999999999864321
Q ss_pred HHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCcccccceeeEeeeecCchhHHHHHHHHH
Q 000756 643 LESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDL 722 (1300)
Q Consensus 643 le~iv~rl~~~~~~~~~~~riV~LSATlpn~~dva~~L~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~ 722 (1300)
... +......+++++||||. .+..++--+..........-.+..| .|+...+... ... . .
T Consensus 400 -r~~-------l~~~~~~~~iL~~SATp-~prtl~~~~~g~~~~s~i~~~p~~r-~~i~~~~~~~--~~~----~----~ 459 (681)
T PRK10917 400 -RLA-------LREKGENPHVLVMTATP-IPRTLAMTAYGDLDVSVIDELPPGR-KPITTVVIPD--SRR----D----E 459 (681)
T ss_pred -HHH-------HHhcCCCCCEEEEeCCC-CHHHHHHHHcCCCceEEEecCCCCC-CCcEEEEeCc--ccH----H----H
Confidence 111 11224468899999994 4444443222211111111111111 1333333221 111 1 1
Q ss_pred HHHHHHHH-hCCCeEEEEEcChHHHHH--------HHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhh
Q 000756 723 CYEKVVAV-AGKHQVLIFVHSRKETAK--------TARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793 (1300)
Q Consensus 723 ~~~~i~~~-~~~~~vLVFv~sr~~~~~--------~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll 793 (1300)
+++.+... ..+++++|||+..++... ++..|. ..+
T Consensus 460 ~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~------------------------------------~~~ 503 (681)
T PRK10917 460 VYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQ------------------------------------EAF 503 (681)
T ss_pred HHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHH------------------------------------HHC
Confidence 12222222 347899999997654432 222221 122
Q ss_pred -cCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccC
Q 000756 794 -PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAG 872 (1300)
Q Consensus 794 -~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAG 872 (1300)
...|+.+||+|+..+|..+++.|++|.++|||||+++++|||+|++++||. |+++. .+...+.||+||+|
T Consensus 504 ~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi----~~~~r-----~gls~lhQ~~GRvG 574 (681)
T PRK10917 504 PELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVI----ENAER-----FGLAQLHQLRGRVG 574 (681)
T ss_pred CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEE----eCCCC-----CCHHHHHHHhhccc
Confidence 256999999999999999999999999999999999999999999999997 88764 26788999999999
Q ss_pred CCCCCCceEEEEEeCCC
Q 000756 873 RPQYDSYGEGIIITGHS 889 (1300)
Q Consensus 873 R~g~d~~G~~iil~~~~ 889 (1300)
|.| ..|.|+++++.+
T Consensus 575 R~g--~~g~~ill~~~~ 589 (681)
T PRK10917 575 RGA--AQSYCVLLYKDP 589 (681)
T ss_pred CCC--CceEEEEEECCC
Confidence 987 789999999643
No 56
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=9.4e-34 Score=356.61 Aligned_cols=312 Identities=23% Similarity=0.329 Sum_probs=219.8
Q ss_pred CCCCCCHHHHHHHHHHHcCC-----CeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHH
Q 000756 492 GMTQLNRVQSRVYKSALSSA-----DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (1300)
Q Consensus 492 g~~~ln~iQ~~~i~~~l~~~-----~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~ 566 (1300)
+| +||++|.+|++.++..- .|.|++||||||||.+|+++++..+.. +.+++|++||++||.|+
T Consensus 233 pf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~-----------g~qvlilaPT~~LA~Q~ 300 (630)
T TIGR00643 233 PF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA-----------GYQVALMAPTEILAEQH 300 (630)
T ss_pred CC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc-----------CCcEEEECCHHHHHHHH
Confidence 35 79999999999988651 368999999999999999999988754 35799999999999999
Q ss_pred HHHHhhhcccCCcEEEEEeCCCccchhh-------hccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccCC
Q 000756 567 VGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNR 639 (1300)
Q Consensus 567 ~~~~~~~l~~~gi~V~~ltGd~~~~~~~-------~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~r 639 (1300)
++.+++.+..+|+++..++|+.....+. ..+++|+|+||+.+. . ...+.++++|||||+|.++...
T Consensus 301 ~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~---~----~~~~~~l~lvVIDEaH~fg~~q 373 (630)
T TIGR00643 301 YNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQ---E----KVEFKRLALVIIDEQHRFGVEQ 373 (630)
T ss_pred HHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHh---c----cccccccceEEEechhhccHHH
Confidence 9999999998899999999998654321 235799999998542 1 1346789999999999965321
Q ss_pred hhHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCcccccceeeEeeeecCchhHHHHHH
Q 000756 640 GPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLM 719 (1300)
Q Consensus 640 g~~le~iv~rl~~~~~~~~~~~riV~LSATlpn~~dva~~L~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~ 719 (1300)
.. .+... ......+++++||||. .+..++..+............+..| .|+...+... .. +
T Consensus 374 r~----~l~~~----~~~~~~~~~l~~SATp-~prtl~l~~~~~l~~~~i~~~p~~r-~~i~~~~~~~--~~---~---- 434 (630)
T TIGR00643 374 RK----KLREK----GQGGFTPHVLVMSATP-IPRTLALTVYGDLDTSIIDELPPGR-KPITTVLIKH--DE---K---- 434 (630)
T ss_pred HH----HHHHh----cccCCCCCEEEEeCCC-CcHHHHHHhcCCcceeeeccCCCCC-CceEEEEeCc--ch---H----
Confidence 11 11111 0011267899999994 3344433221111110111001111 2333332221 11 1
Q ss_pred HHHHHHHHHHHh-CCCeEEEEEcChHHHHHH--------HHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhh
Q 000756 720 NDLCYEKVVAVA-GKHQVLIFVHSRKETAKT--------ARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLK 790 (1300)
Q Consensus 720 ~~~~~~~i~~~~-~~~~vLVFv~sr~~~~~~--------a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~ 790 (1300)
..++..+.+.. .+++++|||+...+...+ +..|...
T Consensus 435 -~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~---------------------------------- 479 (630)
T TIGR00643 435 -DIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKA---------------------------------- 479 (630)
T ss_pred -HHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhh----------------------------------
Confidence 22334444332 378999999987554322 2222111
Q ss_pred hhhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhc
Q 000756 791 DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGR 870 (1300)
Q Consensus 791 ~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GR 870 (1300)
+....|+++||+|+..+|..+++.|++|.++|||||+++++|||+|++++||. |+++. .+...+.||+||
T Consensus 480 -~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi----~~~~r-----~gls~lhQ~~GR 549 (630)
T TIGR00643 480 -FPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVI----EDAER-----FGLSQLHQLRGR 549 (630)
T ss_pred -CCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEE----eCCCc-----CCHHHHHHHhhh
Confidence 12356999999999999999999999999999999999999999999999996 77764 267889999999
Q ss_pred cCCCCCCCceEEEEEeCC
Q 000756 871 AGRPQYDSYGEGIIITGH 888 (1300)
Q Consensus 871 AGR~g~d~~G~~iil~~~ 888 (1300)
|||.| ..|.|++++..
T Consensus 550 vGR~g--~~g~~il~~~~ 565 (630)
T TIGR00643 550 VGRGD--HQSYCLLVYKN 565 (630)
T ss_pred cccCC--CCcEEEEEECC
Confidence 99986 88999999843
No 57
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.4e-34 Score=321.81 Aligned_cols=334 Identities=19% Similarity=0.286 Sum_probs=258.9
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHH
Q 000756 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1300)
Q Consensus 491 ~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~ 570 (1300)
..|..++|+|-+++|.++.+.+ |+-.|-||||||.+|..+++-+++....-. ..+++..||++|||+||.|++.+.
T Consensus 241 ~Ey~kptpiq~qalptalsgrd-vigIAktgSgktaAfi~pm~~himdq~eL~---~g~gPi~vilvPTrela~Qi~~ea 316 (731)
T KOG0339|consen 241 SEYEKPTPIQCQALPTALSGRD-VIGIAKTGSGKTAAFIWPMIVHIMDQPELK---PGEGPIGVILVPTRELASQIFSEA 316 (731)
T ss_pred hhcccCCccccccccccccccc-chheeeccCcchhHHHHHHHHHhcchhhhc---CCCCCeEEEEeccHHHHHHHHHHH
Confidence 4588999999999999998855 999999999999999999999887653211 135788999999999999999999
Q ss_pred hhhcccCCcEEEEEeCCCccchhh---hccceEEEECcchH-HHHHhhcCCCcccccccEEEEeccccccc-CChhHHHH
Q 000756 571 SNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLES 645 (1300)
Q Consensus 571 ~~~l~~~gi~V~~ltGd~~~~~~~---~~~~~IIV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~ 645 (1300)
+++.+.+|+++..++|+.+...+. ..++.||||||+++ |++.-+.. .++++.++||||++.|.+ ++-+.+.+
T Consensus 317 Kkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKat---n~~rvS~LV~DEadrmfdmGfe~qVrS 393 (731)
T KOG0339|consen 317 KKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKAT---NLSRVSYLVLDEADRMFDMGFEPQVRS 393 (731)
T ss_pred HHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcc---cceeeeEEEEechhhhhccccHHHHHH
Confidence 998899999999999998876653 25899999999996 77776664 577899999999999988 57677666
Q ss_pred HHHHHHHHHhhccCCeeEEEEcccCCC-hHHHH-HHHhccccCceEEecCCcccccceeeEeeeecCchhHHHHHHHHHH
Q 000756 646 IVARTVRQIETTKEHIRLVGLSATLPN-YEDVA-LFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLC 723 (1300)
Q Consensus 646 iv~rl~~~~~~~~~~~riV~LSATlpn-~~dva-~~L~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~ 723 (1300)
|...+ .+..|.+++|||++- .+.++ ++|. +|.+ +..-+-......+.|.+..+... .++++-+
T Consensus 394 I~~hi-------rpdrQtllFsaTf~~kIe~lard~L~-dpVr-vVqg~vgean~dITQ~V~V~~s~--~~Kl~wl---- 458 (731)
T KOG0339|consen 394 IKQHI-------RPDRQTLLFSATFKKKIEKLARDILS-DPVR-VVQGEVGEANEDITQTVSVCPSE--EKKLNWL---- 458 (731)
T ss_pred HHhhc-------CCcceEEEeeccchHHHHHHHHHHhc-CCee-EEEeehhccccchhheeeeccCc--HHHHHHH----
Confidence 66543 678999999999974 23333 3443 2221 11111111112233333333222 2222222
Q ss_pred HHHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCC
Q 000756 724 YEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAG 803 (1300)
Q Consensus 724 ~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hag 803 (1300)
...+.+....+++||||.-...++.++..|.-.. +.|+.+||.
T Consensus 459 ~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~-------------------------------------~~v~llhgd 501 (731)
T KOG0339|consen 459 LRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKG-------------------------------------FNVSLLHGD 501 (731)
T ss_pred HHHhhhhccCCcEEEEEeccCCHHHHHHHhcccc-------------------------------------ceeeeecCc
Confidence 2223344457899999999999999988876543 457888999
Q ss_pred CCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCCCCCCceEEE
Q 000756 804 MTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883 (1300)
Q Consensus 804 l~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d~~G~~i 883 (1300)
|.+.+|+.++..|+.+...|||+|+++++|+|+|.+..||+ ||... ++..+.||+||+||.| ..|.+|
T Consensus 502 kdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvn----yD~ar------dIdththrigrtgRag--~kGvay 569 (731)
T KOG0339|consen 502 KDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVN----YDFAR------DIDTHTHRIGRTGRAG--EKGVAY 569 (731)
T ss_pred hhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeec----ccccc------hhHHHHHHhhhccccc--ccceee
Confidence 99999999999999999999999999999999999999998 88665 7899999999999998 679999
Q ss_pred EEeCCCcHHHHH
Q 000756 884 IITGHSELRYYL 895 (1300)
Q Consensus 884 il~~~~~~~~y~ 895 (1300)
.+.++.+..+.-
T Consensus 570 TlvTeKDa~fAG 581 (731)
T KOG0339|consen 570 TLVTEKDAEFAG 581 (731)
T ss_pred EEechhhHHHhh
Confidence 999988866543
No 58
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.8e-33 Score=326.83 Aligned_cols=439 Identities=16% Similarity=0.191 Sum_probs=313.7
Q ss_pred HHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcc-cCCcEEEEE
Q 000756 506 SALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVREL 584 (1300)
Q Consensus 506 ~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~-~~gi~V~~l 584 (1300)
.+++.++.++|.|+||||||+.....+...-... ..+|.+..|+|-.|..++.++..-.+ .+|-.|+..
T Consensus 61 ~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~----------~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~ 130 (674)
T KOG0922|consen 61 YAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFAS----------SGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYT 130 (674)
T ss_pred HHHHHCCEEEEEcCCCCCccccHhHHHHhccccc----------CCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeE
Confidence 3567789999999999999998877666543322 23599999999999999998876543 234444332
Q ss_pred eCCCccchhhhccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEE
Q 000756 585 SGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLV 664 (1300)
Q Consensus 585 tGd~~~~~~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV 664 (1300)
. ..++.....+.|.+.|.+ +|+|.......++.+++||+||||+ +.....++-.+++.+-...+..|+|
T Consensus 131 I---RFed~ts~~TrikymTDG---~LLRE~l~Dp~LskYsvIIlDEAHE-----Rsl~TDiLlGlLKki~~~R~~LklI 199 (674)
T KOG0922|consen 131 I---RFEDSTSKDTRIKYMTDG---MLLREILKDPLLSKYSVIILDEAHE-----RSLHTDILLGLLKKILKKRPDLKLI 199 (674)
T ss_pred E---EecccCCCceeEEEecch---HHHHHHhcCCccccccEEEEechhh-----hhhHHHHHHHHHHHHHhcCCCceEE
Confidence 2 222223347899999999 7888887778999999999999998 3344455555666666678889999
Q ss_pred EEcccCCChHHHHHHHhccccCceEEecCCcccccceeeEeeeecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEEcChH
Q 000756 665 GLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRK 744 (1300)
Q Consensus 665 ~LSATlpn~~dva~~L~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~ 744 (1300)
.+|||+ |.+.+.+|+...+ ++...+ |..|++..|..-+... ........+.+ +....+.+.+|||.++..
T Consensus 200 imSATl-da~kfS~yF~~a~---i~~i~G--R~fPVei~y~~~p~~d---Yv~a~~~tv~~-Ih~~E~~GDILvFLtGqe 269 (674)
T KOG0922|consen 200 IMSATL-DAEKFSEYFNNAP---ILTIPG--RTFPVEILYLKEPTAD---YVDAALITVIQ-IHLTEPPGDILVFLTGQE 269 (674)
T ss_pred EEeeee-cHHHHHHHhcCCc---eEeecC--CCCceeEEeccCCchh---hHHHHHHHHHH-HHccCCCCCEEEEeCCHH
Confidence 999998 7899999998633 444444 5556666666533332 22232333333 333345779999999999
Q ss_pred HHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHHHHHHHhCCCccEE
Q 000756 745 ETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVL 824 (1300)
Q Consensus 745 ~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VL 824 (1300)
+.+.++..|.+....... ..+.-+..+||.|+.+++..|++.-..|..+|+
T Consensus 270 EIe~~~~~l~e~~~~~~~-----------------------------~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvI 320 (674)
T KOG0922|consen 270 EIEAACELLRERAKSLPE-----------------------------DCPELILPLYGALPSEEQSRVFDPAPPGKRKVI 320 (674)
T ss_pred HHHHHHHHHHHHhhhccc-----------------------------cCcceeeeecccCCHHHhhccccCCCCCcceEE
Confidence 999999999887532211 111125678999999999999999999999999
Q ss_pred EeccccccccCCCCcEEEEec----ceeccCCCCC----cccCCHHHHHHhhhccCCCCCCCceEEEEEeCCCcHHHHHH
Q 000756 825 VSTATLAWGVNLPAHTVIIKG----TQIYNPEKGA----WTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLS 896 (1300)
Q Consensus 825 VaT~tla~GVdlPav~vVI~~----t~~yd~~~g~----~~~~S~~d~lQr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ 896 (1300)
+||++++.+|.||++.+||+. ...|+|..|. .+++|..+..||.|||||.| +|+||.+++..+ |.+
T Consensus 321 lsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~---pGkcyRLYte~~---~~~ 394 (674)
T KOG0922|consen 321 LSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG---PGKCYRLYTESA---YDK 394 (674)
T ss_pred EEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC---CceEEEeeeHHH---Hhh
Confidence 999999999999999999996 4779998874 37899999999999999986 999999998655 455
Q ss_pred hhcCCCCcccchhHhHHHHHHHHHHhccccCHHHHHHHHHhhHHHHHHhcCCcccCCCccccccchhhhhHHHHHHHHHH
Q 000756 897 LMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAA 976 (1300)
Q Consensus 897 ll~~~lPiES~l~~~l~d~lnaEI~~g~i~~~~d~~~wL~~T~ly~r~~~nP~~y~~~~~~~~~~~~l~~~~~~li~~a~ 976 (1300)
+..++.| ||..-+ |+.++|+..-+ |+.+ ...-+.++.+..+.+..|+
T Consensus 395 ~~~~~~P---------------EI~R~~----------Ls~~vL~Lkal------gi~d--~l~F~f~d~P~~~~l~~AL 441 (674)
T KOG0922|consen 395 MPLQTVP---------------EIQRVN----------LSSAVLQLKAL------GIND--PLRFPFIDPPPPEALEEAL 441 (674)
T ss_pred cccCCCC---------------ceeeec----------hHHHHHHHHhc------CCCC--cccCCCCCCCChHHHHHHH
Confidence 6555555 222211 23333333222 2221 1223344555667789999
Q ss_pred HHHHHCCCccccccCCceeecc-ccccccccccccccHHHHHhhcCCCCChHHHHHHhcCCcccccCcCCchHHH
Q 000756 977 TILDRNNLVKYDRKSGYFQVTD-LGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKM 1050 (1300)
Q Consensus 977 ~~L~~~~~i~~~~~~~~~~~T~-lG~ias~~yi~~~T~~~~~~~l~~~~~~~~il~ils~s~EF~~i~vR~~E~~ 1050 (1300)
..|...|+|+.+ | .+|. +|+-||.+++.|...++...+-.-.|+ .+++.+.|+-+ -.++..|..++.
T Consensus 442 ~~L~~lgald~~---g--~lt~p~G~~ma~~Pl~p~lsk~ll~s~~~gc~-~e~l~i~a~Ls-v~~~f~~p~~~~ 509 (674)
T KOG0922|consen 442 EELYSLGALDDR---G--KLTSPLGRQMAELPLEPHLSKMLLKSSELGCS-EEILTIAAMLS-VQSVFSRPKDKK 509 (674)
T ss_pred HHHHhcCcccCc---C--CcCchHHhhhhhcCCCcchhhhhhhccccCCc-chhhhheeeee-ccceecCccchh
Confidence 999999999833 3 3455 999999999999999999887766666 45665555433 345555544433
No 59
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.1e-33 Score=310.65 Aligned_cols=343 Identities=17% Similarity=0.233 Sum_probs=255.7
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcC
Q 000756 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (1300)
Q Consensus 481 ~Lp~~~~~~f--~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP 558 (1300)
.|++.+..+. .||..||-||+.+||-++++. +++..|.||||||.+|++|+++.+....... ....++.+++++|
T Consensus 25 gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgK-DvvarArTGSGKT~AYliPllqkll~~k~t~--~~e~~~sa~iLvP 101 (569)
T KOG0346|consen 25 GLDSRLLKAITKLGWEKPTLIQSSAIPLALEGK-DVVARARTGSGKTAAYLIPLLQKLLAEKKTN--DGEQGPSAVILVP 101 (569)
T ss_pred CCCHHHHHHHHHhCcCCcchhhhcccchhhcCc-ceeeeeccCCCchHHHHHHHHHHHHHhhhcc--cccccceeEEEec
Confidence 4677777776 799999999999999999985 6999999999999999999999987754332 1235678999999
Q ss_pred cHHHHHHHHHHHhhhcccC--CcEEEEEeCCCccchh---hhccceEEEECcchHHHHHhhcCCCcccccccEEEEeccc
Q 000756 559 MKALVAEVVGNLSNRLQMY--DVKVRELSGDQTLTRQ---QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIH 633 (1300)
Q Consensus 559 ~kaLa~q~~~~~~~~l~~~--gi~V~~ltGd~~~~~~---~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH 633 (1300)
||+||+|++..+.++...+ .+++.-++.+++-+.. ....++|+|+||.++........ ...+..++++|+|||+
T Consensus 102 TkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~-~~~~~~l~~LVvDEAD 180 (569)
T KOG0346|consen 102 TKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGV-LEYLDSLSFLVVDEAD 180 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhcc-chhhhheeeEEechhh
Confidence 9999999999998876544 3555555544443322 24679999999999643333222 2577889999999999
Q ss_pred cccc-CChhHHHHHHHHHHHHHhhccCCeeEEEEcccCCC-hHHHHHHHhccccCceEEecCCcc--cccceeeEeeeec
Q 000756 634 LLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNSYR--PVPLSQQYIGIQV 709 (1300)
Q Consensus 634 ~l~d-~rg~~le~iv~rl~~~~~~~~~~~riV~LSATlpn-~~dva~~L~~~~~~~~~~f~~~~r--pv~l~~~~~~~~~ 709 (1300)
++.. ++...+..+. ...++..|.++||||+.+ ...+...+..+|. +..+....- |-.+.|+++.+.+
T Consensus 181 LllsfGYeedlk~l~-------~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPv--iLkl~e~el~~~dqL~Qy~v~cse 251 (569)
T KOG0346|consen 181 LLLSFGYEEDLKKLR-------SHLPRIYQCFLMSATLSDDVQALKKLFLHNPV--ILKLTEGELPNPDQLTQYQVKCSE 251 (569)
T ss_pred hhhhcccHHHHHHHH-------HhCCchhhheeehhhhhhHHHHHHHHhccCCe--EEEeccccCCCcccceEEEEEecc
Confidence 9986 3433333333 345778889999999974 2233333433432 233333333 4567777777775
Q ss_pred CchhHHHHHHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhh
Q 000756 710 KKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDL 789 (1300)
Q Consensus 710 ~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L 789 (1300)
....-. +|-.+.-..-.+++|||||+...|.++...|...+..
T Consensus 252 ~DKfll-------lyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGik------------------------------ 294 (569)
T KOG0346|consen 252 EDKFLL-------LYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIK------------------------------ 294 (569)
T ss_pred chhHHH-------HHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcH------------------------------
Confidence 433221 2222222222689999999999999999888876533
Q ss_pred hhhhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEecc-----------------------------------cccccc
Q 000756 790 KDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTA-----------------------------------TLAWGV 834 (1300)
Q Consensus 790 ~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~-----------------------------------tla~GV 834 (1300)
-+++.|.|+..-|-.+++.|..|..+++|||+ -.+|||
T Consensus 295 -------sciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGI 367 (569)
T KOG0346|consen 295 -------SCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGI 367 (569)
T ss_pred -------hhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccc
Confidence 24568999999999999999999999999999 235999
Q ss_pred CCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCCCCCCceEEEEEeCCCcHH
Q 000756 835 NLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR 892 (1300)
Q Consensus 835 dlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d~~G~~iil~~~~~~~ 892 (1300)
|+..|..||+ ||.|. +...|+||+||++|.+ ++|.++.|+.+.+..
T Consensus 368 DF~~V~~VlN----FD~P~------t~~sYIHRvGRTaRg~--n~GtalSfv~P~e~~ 413 (569)
T KOG0346|consen 368 DFHHVSNVLN----FDFPE------TVTSYIHRVGRTARGN--NKGTALSFVSPKEEF 413 (569)
T ss_pred cchheeeeee----cCCCC------chHHHHHhccccccCC--CCCceEEEecchHHh
Confidence 9999999999 89876 8999999999999987 899999999887644
No 60
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=1.6e-32 Score=358.13 Aligned_cols=308 Identities=19% Similarity=0.262 Sum_probs=222.9
Q ss_pred CCCHHHHHHHHHHHcC-----CCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHH
Q 000756 495 QLNRVQSRVYKSALSS-----ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (1300)
Q Consensus 495 ~ln~iQ~~~i~~~l~~-----~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~ 569 (1300)
.+|++|.+|++.++.+ ..++|+|||||+|||.+|+.+++..+.. +.+++|++||++||.|++..
T Consensus 600 ~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~-----------g~qvlvLvPT~eLA~Q~~~~ 668 (1147)
T PRK10689 600 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN-----------HKQVAVLVPTTLLAQQHYDN 668 (1147)
T ss_pred CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc-----------CCeEEEEeCcHHHHHHHHHH
Confidence 7999999999998875 2579999999999999999888776542 45799999999999999999
Q ss_pred HhhhcccCCcEEEEEeCCCccchhh-------hccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccCChhH
Q 000756 570 LSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPV 642 (1300)
Q Consensus 570 ~~~~l~~~gi~V~~ltGd~~~~~~~-------~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~ 642 (1300)
|++++..+++++..++|..+...+. ...++|+|+||+. + ++. ..+.++++|||||+|+++. .
T Consensus 669 f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~l---L-~~~---v~~~~L~lLVIDEahrfG~----~ 737 (1147)
T PRK10689 669 FRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKL---L-QSD---VKWKDLGLLIVDEEHRFGV----R 737 (1147)
T ss_pred HHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHH---H-hCC---CCHhhCCEEEEechhhcch----h
Confidence 9999988889999999876654332 1368999999972 3 221 2457899999999999742 1
Q ss_pred HHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCcccccceeeEeeeecCchhHHHHHHHHH
Q 000756 643 LESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDL 722 (1300)
Q Consensus 643 le~iv~rl~~~~~~~~~~~riV~LSATlpn~~dva~~L~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~ 722 (1300)
.... +.....++++++||||++. ..+...+........+...+. ...++...+..+. ... +...
T Consensus 738 ~~e~-------lk~l~~~~qvLl~SATpip-rtl~l~~~gl~d~~~I~~~p~-~r~~v~~~~~~~~--~~~-----~k~~ 801 (1147)
T PRK10689 738 HKER-------IKAMRADVDILTLTATPIP-RTLNMAMSGMRDLSIIATPPA-RRLAVKTFVREYD--SLV-----VREA 801 (1147)
T ss_pred HHHH-------HHhcCCCCcEEEEcCCCCH-HHHHHHHhhCCCcEEEecCCC-CCCCceEEEEecC--cHH-----HHHH
Confidence 1111 1234568999999999533 222211111101112222222 2223333332211 100 1111
Q ss_pred HHHHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecC
Q 000756 723 CYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHA 802 (1300)
Q Consensus 723 ~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Ha 802 (1300)
+ +.+...+++++|||+++..+..++..|..... ..+|+++||
T Consensus 802 i---l~el~r~gqv~vf~n~i~~ie~la~~L~~~~p-----------------------------------~~~v~~lHG 843 (1147)
T PRK10689 802 I---LREILRGGQVYYLYNDVENIQKAAERLAELVP-----------------------------------EARIAIGHG 843 (1147)
T ss_pred H---HHHHhcCCeEEEEECCHHHHHHHHHHHHHhCC-----------------------------------CCcEEEEeC
Confidence 1 22233478999999999999999988876421 146889999
Q ss_pred CCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCCCCCCceEE
Q 000756 803 GMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEG 882 (1300)
Q Consensus 803 gl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d~~G~~ 882 (1300)
+|++.+|..++..|++|+++|||||+++++|||+|++++||. +++.. ++...|.||+||+||.| ..|.|
T Consensus 844 ~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi----~~ad~-----fglaq~~Qr~GRvGR~g--~~g~a 912 (1147)
T PRK10689 844 QMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII----ERADH-----FGLAQLHQLRGRVGRSH--HQAYA 912 (1147)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEE----ecCCC-----CCHHHHHHHhhccCCCC--CceEE
Confidence 999999999999999999999999999999999999999984 44432 36678999999999987 89999
Q ss_pred EEEeCCC
Q 000756 883 IIITGHS 889 (1300)
Q Consensus 883 iil~~~~ 889 (1300)
++++..+
T Consensus 913 ~ll~~~~ 919 (1147)
T PRK10689 913 WLLTPHP 919 (1147)
T ss_pred EEEeCCC
Confidence 9998764
No 61
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=2.8e-32 Score=338.13 Aligned_cols=326 Identities=18% Similarity=0.185 Sum_probs=220.3
Q ss_pred HHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHH---------HHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHH
Q 000756 498 RVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTIL---------QQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVG 568 (1300)
Q Consensus 498 ~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il---------~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~ 568 (1300)
.+|.++++.+.++ +++|++|+||||||.+....++ ..+..-. . .....++++++||++||.|+..
T Consensus 167 ~iQ~qil~~i~~g-kdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~-~----~~~~~~ilvt~PrreLa~qi~~ 240 (675)
T PHA02653 167 DVQLKIFEAWISR-KPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID-P----NFIERPIVLSLPRVALVRLHSI 240 (675)
T ss_pred HHHHHHHHHHHhC-CCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc-c----ccCCcEEEEECcHHHHHHHHHH
Confidence 4899999998766 6699999999999998543333 2221100 0 1124589999999999999999
Q ss_pred HHhhhccc---CCcEEEEEeCCCccc--hhhhccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccCChhHH
Q 000756 569 NLSNRLQM---YDVKVRELSGDQTLT--RQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVL 643 (1300)
Q Consensus 569 ~~~~~l~~---~gi~V~~ltGd~~~~--~~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~l 643 (1300)
++.+.++. .|..|....|+.... .......+|+|+|+.. ....++.+++|||||||++... +..+
T Consensus 241 ~i~~~vg~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L---------~l~~L~~v~~VVIDEaHEr~~~-~Dll 310 (675)
T PHA02653 241 TLLKSLGFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKL---------TLNKLFDYGTVIIDEVHEHDQI-GDII 310 (675)
T ss_pred HHHHHhCccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcc---------cccccccCCEEEccccccCccc-hhHH
Confidence 99876653 267788889987632 1122357899999762 1125678999999999997653 3333
Q ss_pred HHHHHHHHHHHhhccCCeeEEEEcccCCC-hHHHHHHHhccccCceEEecCCcc-cccceeeEeeeecCc--hhHHHHHH
Q 000756 644 ESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNSYR-PVPLSQQYIGIQVKK--PLQRFQLM 719 (1300)
Q Consensus 644 e~iv~rl~~~~~~~~~~~riV~LSATlpn-~~dva~~L~~~~~~~~~~f~~~~r-pv~l~~~~~~~~~~~--~~~~~~~~ 719 (1300)
..++..+. ....|+++||||++. .+.+..|++.. ..+... .+ ..|+++.++...... .......-
T Consensus 311 L~llk~~~------~~~rq~ILmSATl~~dv~~l~~~~~~p---~~I~I~--grt~~pV~~~yi~~~~~~~~~~~y~~~~ 379 (675)
T PHA02653 311 IAVARKHI------DKIRSLFLMTATLEDDRDRIKEFFPNP---AFVHIP--GGTLFPISEVYVKNKYNPKNKRAYIEEE 379 (675)
T ss_pred HHHHHHhh------hhcCEEEEEccCCcHhHHHHHHHhcCC---cEEEeC--CCcCCCeEEEEeecCcccccchhhhHHH
Confidence 33332221 123489999999973 55677777532 122322 23 256666665432110 00000110
Q ss_pred HHHHHHHHHHHh--CCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCe
Q 000756 720 NDLCYEKVVAVA--GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGF 797 (1300)
Q Consensus 720 ~~~~~~~i~~~~--~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv 797 (1300)
...+...+.... .++++||||+++.++..+++.|..... ...+
T Consensus 380 k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~-----------------------------------~~~v 424 (675)
T PHA02653 380 KKNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLP-----------------------------------IYDF 424 (675)
T ss_pred HHHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcC-----------------------------------CceE
Confidence 111122222221 256899999999999999998875420 1346
Q ss_pred EEecCCCCHHHHHHHHHHH-hCCCccEEEeccccccccCCCCcEEEEecceeccCC--CCCcccCCHHHHHHhhhccCCC
Q 000756 798 AIHHAGMTRGDRQLVEDLF-GDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPE--KGAWTELSPLDIMQMLGRAGRP 874 (1300)
Q Consensus 798 ~~~Hagl~~~dR~~ve~~F-~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~--~g~~~~~S~~d~lQr~GRAGR~ 874 (1300)
..+||+|++. +.+++.| ++|..+|||||+++++|||+|++++||+.+..+.|. .+...++|..+|.||+|||||.
T Consensus 425 ~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~ 502 (675)
T PHA02653 425 YIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV 502 (675)
T ss_pred EeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC
Confidence 7889999975 3455565 789999999999999999999999999976444443 3444678999999999999997
Q ss_pred CCCCceEEEEEeCCCc
Q 000756 875 QYDSYGEGIIITGHSE 890 (1300)
Q Consensus 875 g~d~~G~~iil~~~~~ 890 (1300)
..|.|+.+++..+
T Consensus 503 ---~~G~c~rLyt~~~ 515 (675)
T PHA02653 503 ---SPGTYVYFYDLDL 515 (675)
T ss_pred ---CCCeEEEEECHHH
Confidence 4899999998765
No 62
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.3e-33 Score=339.49 Aligned_cols=362 Identities=21% Similarity=0.336 Sum_probs=273.5
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHH
Q 000756 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1300)
Q Consensus 491 ~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~ 570 (1300)
.||..++|||.+|||+++.+.+ +|..|-||||||+.|.||+++++...+... ..+++.+|+++||++||.|+.+.+
T Consensus 383 l~y~k~~~IQ~qAiP~ImsGrd-vIgvakTgSGKT~af~LPmirhi~dQr~~~---~gdGPi~li~aPtrela~QI~r~~ 458 (997)
T KOG0334|consen 383 LGYEKPTPIQAQAIPAIMSGRD-VIGVAKTGSGKTLAFLLPMIRHIKDQRPLE---EGDGPIALILAPTRELAMQIHREV 458 (997)
T ss_pred hcCCCCcchhhhhcchhccCcc-eEEeeccCCccchhhhcchhhhhhcCCChh---hCCCceEEEEcCCHHHHHHHHHHH
Confidence 4788999999999999988755 999999999999999999999887765433 125889999999999999999999
Q ss_pred hhhcccCCcEEEEEeCCCccchhh---hccceEEEECcch-HHHHHhhcCCCcccccccEEEEeccccccc-CChhHHHH
Q 000756 571 SNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEK-WDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLES 645 (1300)
Q Consensus 571 ~~~l~~~gi~V~~ltGd~~~~~~~---~~~~~IIV~TPek-ld~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~ 645 (1300)
++++..+|+++.+.+|+.....+. ..++.|+||||++ +|++.-.......+.++-++|+||++.|.+ .+-|..-.
T Consensus 459 ~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~ 538 (997)
T KOG0334|consen 459 RKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITR 538 (997)
T ss_pred HHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccch
Confidence 999999999999999998877653 2469999999999 588888777667777788999999999998 46676655
Q ss_pred HHHHHHHHHhhccCCeeEEEEcccCCCh-HHHHHHHhccccCceEEecCC-cccccceeeEeeeecCchhHHHHHHHHHH
Q 000756 646 IVARTVRQIETTKEHIRLVGLSATLPNY-EDVALFLRVNLEKGLFYFDNS-YRPVPLSQQYIGIQVKKPLQRFQLMNDLC 723 (1300)
Q Consensus 646 iv~rl~~~~~~~~~~~riV~LSATlpn~-~dva~~L~~~~~~~~~~f~~~-~rpv~l~~~~~~~~~~~~~~~~~~~~~~~ 723 (1300)
|+.++ ++..|.|.+|||+|.. +.++.-+...|.. ..+... .-.-.+.+.+..+... ..++..+..+
T Consensus 539 Ii~nl-------rpdrQtvlfSatfpr~m~~la~~vl~~Pve--iiv~~~svV~k~V~q~v~V~~~e--~eKf~kL~eL- 606 (997)
T KOG0334|consen 539 ILQNL-------RPDRQTVLFSATFPRSMEALARKVLKKPVE--IIVGGRSVVCKEVTQVVRVCAIE--NEKFLKLLEL- 606 (997)
T ss_pred HHhhc-------chhhhhhhhhhhhhHHHHHHHHHhhcCCee--EEEccceeEeccceEEEEEecCc--hHHHHHHHHH-
Confidence 55543 6788999999999863 3444444434332 222211 1111334444433311 1222222222
Q ss_pred HHHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCC
Q 000756 724 YEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAG 803 (1300)
Q Consensus 724 ~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hag 803 (1300)
+.+.....++||||.+...|..+.+.|...+..+. .+|||
T Consensus 607 ---l~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~-------------------------------------slHGg 646 (997)
T KOG0334|consen 607 ---LGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCD-------------------------------------SLHGG 646 (997)
T ss_pred ---HHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchh-------------------------------------hhcCC
Confidence 33333478999999999999999999886654432 24999
Q ss_pred CCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCCCCCCceEEE
Q 000756 804 MTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883 (1300)
Q Consensus 804 l~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d~~G~~i 883 (1300)
.++.+|..+++.|++|.+.+||||+++++|+|++...+||+ ||.+. -..+|+||+||+||.| +.|.|+
T Consensus 647 v~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvn----yd~pn------h~edyvhR~gRTgrag--rkg~Av 714 (997)
T KOG0334|consen 647 VDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVN----YDFPN------HYEDYVHRVGRTGRAG--RKGAAV 714 (997)
T ss_pred CchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEE----cccch------hHHHHHHHhcccccCC--ccceeE
Confidence 99999999999999999999999999999999999999998 99887 3677999999999998 899999
Q ss_pred EEeCCCcHHHHH------HhhcCCCCcccchhHhHHHHHHHHHHhc
Q 000756 884 IITGHSELRYYL------SLMNQQLPIESQFVSKLADQLNAEIVLG 923 (1300)
Q Consensus 884 il~~~~~~~~y~------~ll~~~lPiES~l~~~l~d~lnaEI~~g 923 (1300)
.|.++.+..+-- .+..++.| .++..|..-..++...|
T Consensus 715 tFi~p~q~~~a~dl~~al~~~~~~~P---~~l~~l~~~f~~~~~~~ 757 (997)
T KOG0334|consen 715 TFITPDQLKYAGDLCKALELSKQPVP---KLLQALSERFKAKQKAG 757 (997)
T ss_pred EEeChHHhhhHHHHHHHHHhccCCCc---hHHHHHHHHHHhhhhcc
Confidence 999985543322 12233344 44555555555554443
No 63
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.7e-33 Score=322.07 Aligned_cols=348 Identities=21% Similarity=0.285 Sum_probs=251.2
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCc
Q 000756 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (1300)
Q Consensus 482 Lp~~~~~~f--~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~ 559 (1300)
+...+...+ .+|..|+|+|.+|++.+++. .+++.|||||||||++|.+||+..+....... ...+.+++++.||
T Consensus 143 ~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~-r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~---~~~gl~a~Il~pt 218 (593)
T KOG0344|consen 143 MNKRLLENLQELGFDEPTPIQKQAIPVFLEK-RDVLACAPTGSGKTLAFNLPILQHLKDLSQEK---HKVGLRALILSPT 218 (593)
T ss_pred hcHHHHHhHhhCCCCCCCcccchhhhhhhcc-cceEEeccCCCcchhhhhhHHHHHHHHhhccc---CccceEEEEecch
Confidence 344444444 68999999999999988776 56999999999999999999999998764321 1347899999999
Q ss_pred HHHHHHHHHHHhhhc--ccCCcEEEEEeCCCccchh----hhccceEEEECcchHHHHHhhcCCCcccccccEEEEeccc
Q 000756 560 KALVAEVVGNLSNRL--QMYDVKVRELSGDQTLTRQ----QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIH 633 (1300)
Q Consensus 560 kaLa~q~~~~~~~~l--~~~gi~V~~ltGd~~~~~~----~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH 633 (1300)
|+||.|+++++.+.. ...+.++..+........+ ....++|+++||-++-.+.........+..|.++|+||++
T Consensus 219 reLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD 298 (593)
T KOG0344|consen 219 RELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEAD 298 (593)
T ss_pred HHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHH
Confidence 999999999999876 4445566555554322221 1346899999999864444443323467889999999999
Q ss_pred ccccCChhHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCccc---ccceeeEeeeecC
Q 000756 634 LLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRP---VPLSQQYIGIQVK 710 (1300)
Q Consensus 634 ~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LSATlpn~~dva~~L~~~~~~~~~~f~~~~rp---v~l~~~~~~~~~~ 710 (1300)
++.+. ..+-..++++...+ ..+.+++-+||||++ ..|.+|....... +....-..++ ..+.|..+.+...
T Consensus 299 ~lfe~--~~f~~Qla~I~sac--~s~~i~~a~FSat~~--~~VEE~~~~i~~~-~~~vivg~~~sa~~~V~QelvF~gse 371 (593)
T KOG0344|consen 299 LLFEP--EFFVEQLADIYSAC--QSPDIRVALFSATIS--VYVEEWAELIKSD-LKRVIVGLRNSANETVDQELVFCGSE 371 (593)
T ss_pred hhhCh--hhHHHHHHHHHHHh--cCcchhhhhhhcccc--HHHHHHHHHhhcc-ceeEEEecchhHhhhhhhhheeeecc
Confidence 98754 13333334443333 347889999999976 5788888765321 1111112221 1223333322221
Q ss_pred chhHHHHHHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhh
Q 000756 711 KPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLK 790 (1300)
Q Consensus 711 ~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~ 790 (1300)
. .++-++. + +....-..|+||||.+...|..+...|... +
T Consensus 372 ~--~K~lA~r----q-~v~~g~~PP~lIfVQs~eRak~L~~~L~~~----~----------------------------- 411 (593)
T KOG0344|consen 372 K--GKLLALR----Q-LVASGFKPPVLIFVQSKERAKQLFEELEIY----D----------------------------- 411 (593)
T ss_pred h--hHHHHHH----H-HHhccCCCCeEEEEecHHHHHHHHHHhhhc----c-----------------------------
Confidence 1 1111111 1 112222679999999999998888776410 0
Q ss_pred hhhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhc
Q 000756 791 DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGR 870 (1300)
Q Consensus 791 ~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GR 870 (1300)
.-.|++.||..++..|..+++.|+.|.+.||+||+++++|+|+.+++.||+ ||.+. |...|+||+||
T Consensus 412 ---~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VIn----yD~p~------s~~syihrIGR 478 (593)
T KOG0344|consen 412 ---NINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVIN----YDFPQ------SDLSYIHRIGR 478 (593)
T ss_pred ---CcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEe----cCCCc------hhHHHHHHhhc
Confidence 124788999999999999999999999999999999999999999999999 99887 89999999999
Q ss_pred cCCCCCCCceEEEEEeCCCcHHHHH
Q 000756 871 AGRPQYDSYGEGIIITGHSELRYYL 895 (1300)
Q Consensus 871 AGR~g~d~~G~~iil~~~~~~~~y~ 895 (1300)
+||+| +.|.+|.|++..+..+..
T Consensus 479 tgRag--~~g~Aitfytd~d~~~ir 501 (593)
T KOG0344|consen 479 TGRAG--RSGKAITFYTDQDMPRIR 501 (593)
T ss_pred cCCCC--CCcceEEEeccccchhhh
Confidence 99998 999999999987766544
No 64
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.9e-32 Score=337.46 Aligned_cols=428 Identities=18% Similarity=0.221 Sum_probs=307.0
Q ss_pred HHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcccCCcEEE
Q 000756 503 VYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVR 582 (1300)
Q Consensus 503 ~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~~gi~V~ 582 (1300)
-+-.+++.+..++|+||||||||+...+.++..... .+.+|+++.|+|--|..++.++.+.++ .+++
T Consensus 57 ~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~----------~~g~I~~tQPRRlAArsvA~RvAeel~---~~~G 123 (845)
T COG1643 57 EILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLG----------IAGKIGCTQPRRLAARSVAERVAEELG---EKLG 123 (845)
T ss_pred HHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcc----------cCCeEEecCchHHHHHHHHHHHHHHhC---CCcC
Confidence 344566778899999999999999999888877652 245899999999999999999887664 3444
Q ss_pred EEeCCC-ccchhhhccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCe
Q 000756 583 ELSGDQ-TLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHI 661 (1300)
Q Consensus 583 ~ltGd~-~~~~~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~ 661 (1300)
...|-. ..+......+.|-++|.+ +|+|.......++.+++|||||+|+ |.-....++.-+...+...+.+.
T Consensus 124 ~~VGY~iRfe~~~s~~Trik~mTdG---iLlrei~~D~~Ls~ys~vIiDEaHE----RSl~tDilLgllk~~~~~rr~DL 196 (845)
T COG1643 124 ETVGYSIRFESKVSPRTRIKVMTDG---ILLREIQNDPLLSGYSVVIIDEAHE----RSLNTDILLGLLKDLLARRRDDL 196 (845)
T ss_pred ceeeEEEEeeccCCCCceeEEeccH---HHHHHHhhCcccccCCEEEEcchhh----hhHHHHHHHHHHHHHHhhcCCCc
Confidence 444422 222333357999999999 7777777677899999999999998 34444445554444455556679
Q ss_pred eEEEEcccCCChHHHHHHHhccccCceEEecCCcccccceeeEeeeecCchhHHHHHHHHHHHHHHHHHh--CCCeEEEE
Q 000756 662 RLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVA--GKHQVLIF 739 (1300)
Q Consensus 662 riV~LSATlpn~~dva~~L~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~vLVF 739 (1300)
|+|.||||+ |.+.++.+|+..| ++ ..+.|..|++..|......... ....+. ..+.... +.+.+|||
T Consensus 197 KiIimSATl-d~~rfs~~f~~ap---vi--~i~GR~fPVei~Y~~~~~~d~~-l~~ai~----~~v~~~~~~~~GdILvF 265 (845)
T COG1643 197 KLIIMSATL-DAERFSAYFGNAP---VI--EIEGRTYPVEIRYLPEAEADYI-LLDAIV----AAVDIHLREGSGSILVF 265 (845)
T ss_pred eEEEEeccc-CHHHHHHHcCCCC---EE--EecCCccceEEEecCCCCcchh-HHHHHH----HHHHHhccCCCCCEEEE
Confidence 999999998 7799999998543 33 4455666667666433332211 122222 2232222 27899999
Q ss_pred EcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHHHHHHHhCC
Q 000756 740 VHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDG 819 (1300)
Q Consensus 740 v~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g 819 (1300)
.+...+...+++.|.+..... ..-|..+||.|+.+++..|++--..|
T Consensus 266 LpG~~EI~~~~~~L~~~~l~~---------------------------------~~~i~PLy~~L~~~eQ~rvF~p~~~~ 312 (845)
T COG1643 266 LPGQREIERTAEWLEKAELGD---------------------------------DLEILPLYGALSAEEQVRVFEPAPGG 312 (845)
T ss_pred CCcHHHHHHHHHHHHhccccC---------------------------------CcEEeeccccCCHHHHHhhcCCCCCC
Confidence 999999999999998721110 12367889999999999999888888
Q ss_pred CccEEEeccccccccCCCCcEEEEec----ceeccCCCCC----cccCCHHHHHHhhhccCCCCCCCceEEEEEeCCCcH
Q 000756 820 HVQVLVSTATLAWGVNLPAHTVIIKG----TQIYNPEKGA----WTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL 891 (1300)
Q Consensus 820 ~i~VLVaT~tla~GVdlPav~vVI~~----t~~yd~~~g~----~~~~S~~d~lQr~GRAGR~g~d~~G~~iil~~~~~~ 891 (1300)
..+|++||++++.++.||++++||++ ...||+..|- .+++|.++..||.|||||.+ +|.||-+++.++
T Consensus 313 ~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~---pGicyRLyse~~- 388 (845)
T COG1643 313 KRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG---PGICYRLYSEED- 388 (845)
T ss_pred cceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCC---CceEEEecCHHH-
Confidence 88899999999999999999999997 3679988873 36899999999999999985 999999998643
Q ss_pred HHHHHhhcCCCCcccchhHhHHHHHHHHHHhccccCHHHHHHHHHhhHHHHHHhcCCcccCCCccccccchhhhhHHHHH
Q 000756 892 RYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADL 971 (1300)
Q Consensus 892 ~~y~~ll~~~lPiES~l~~~l~d~lnaEI~~g~i~~~~d~~~wL~~T~ly~r~~~nP~~y~~~~~~~~~~~~l~~~~~~l 971 (1300)
|..+...+.| ||....+.+ ++-.| .-+|+..+ ...-+.++.+....
T Consensus 389 --~~~~~~~t~P---------------EIlrtdLs~---~vL~l-------------~~~G~~~d-~~~f~fld~P~~~~ 434 (845)
T COG1643 389 --FLAFPEFTLP---------------EILRTDLSG---LVLQL-------------KSLGIGQD-IAPFPFLDPPPEAA 434 (845)
T ss_pred --HHhcccCCCh---------------hhhhcchHH---HHHHH-------------HhcCCCCC-cccCccCCCCChHH
Confidence 3355554444 333322221 11111 12444201 23445666677778
Q ss_pred HHHHHHHHHHCCCccccccCCceeeccccccccccccccccHHHHHhhcCCCCC--hHHHHHHhcCCc
Q 000756 972 VHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMG--DIELCRLFSLSE 1037 (1300)
Q Consensus 972 i~~a~~~L~~~~~i~~~~~~~~~~~T~lG~ias~~yi~~~T~~~~~~~l~~~~~--~~~il~ils~s~ 1037 (1300)
+..|+..|...|+++.+. .+|++|+-||.++++|.-+++....-...+. ...|..+|+...
T Consensus 435 i~~A~~~L~~LGAld~~g-----~LT~lG~~ms~lpldprLA~mLl~a~~~g~~~e~~~Ias~Ls~~~ 497 (845)
T COG1643 435 IQAALTLLQELGALDDSG-----KLTPLGKQMSLLPLDPRLARMLLTAPEGGCLGEAATIASMLSEQD 497 (845)
T ss_pred HHHHHHHHHHcCCcCCCC-----CCCHHHHHHHhCCCChHHHHHHHhccccCcHHHHHHHHHhhccCC
Confidence 999999999999998543 3999999999999999999999887765553 123334444444
No 65
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.7e-32 Score=324.14 Aligned_cols=327 Identities=21% Similarity=0.325 Sum_probs=247.7
Q ss_pred hHhhcCCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHH
Q 000756 486 AQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAE 565 (1300)
Q Consensus 486 ~~~~f~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q 565 (1300)
++..| |+..|++-|.++|..++.+ +++++..|||+||++||.+|.+-. .| -+|+|.|..+|...
T Consensus 9 L~~~f-Gy~~FR~gQ~evI~~~l~g-~d~lvvmPTGgGKSlCyQiPAll~-------~G-------~TLVVSPLiSLM~D 72 (590)
T COG0514 9 LKQVF-GYASFRPGQQEIIDALLSG-KDTLVVMPTGGGKSLCYQIPALLL-------EG-------LTLVVSPLISLMKD 72 (590)
T ss_pred HHHHh-CccccCCCHHHHHHHHHcC-CcEEEEccCCCCcchHhhhHHHhc-------CC-------CEEEECchHHHHHH
Confidence 34444 7999999999999999988 669999999999999999998743 12 58999999999999
Q ss_pred HHHHHhhhcccCCcEEEEEeCCCccchhh-------hccceEEEECcchH--HHHHhhcCCCcccccccEEEEecccccc
Q 000756 566 VVGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKW--DIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (1300)
Q Consensus 566 ~~~~~~~~l~~~gi~V~~ltGd~~~~~~~-------~~~~~IIV~TPekl--d~l~r~~~~~~~l~~v~liIiDEaH~l~ 636 (1300)
+++.+... |+.+..+.+..+..... ....++++-+||++ ..+.+... ...+.+++|||||++.
T Consensus 73 QV~~l~~~----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~----~~~i~l~vIDEAHCiS 144 (590)
T COG0514 73 QVDQLEAA----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLK----RLPISLVAIDEAHCIS 144 (590)
T ss_pred HHHHHHHc----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHH----hCCCceEEechHHHHh
Confidence 99998764 78887777664433221 23579999999996 22222111 3458899999999997
Q ss_pred c---CChhHHHHHHHHHHHHHhhccCCeeEEEEcccCCC--hHHHHHHHhccccCceEEecCCcccccceeeEeeeecCc
Q 000756 637 D---NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN--YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKK 711 (1300)
Q Consensus 637 d---~rg~~le~iv~rl~~~~~~~~~~~riV~LSATlpn--~~dva~~L~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~ 711 (1300)
. +++|.|..+-.- ... -+++.+++||||-+. ..|+..-|+... ...+..+-.||. +...+. ...+
T Consensus 145 qWGhdFRP~Y~~lg~l----~~~-~~~~p~~AlTATA~~~v~~DI~~~L~l~~--~~~~~~sfdRpN-i~~~v~--~~~~ 214 (590)
T COG0514 145 QWGHDFRPDYRRLGRL----RAG-LPNPPVLALTATATPRVRDDIREQLGLQD--ANIFRGSFDRPN-LALKVV--EKGE 214 (590)
T ss_pred hcCCccCHhHHHHHHH----Hhh-CCCCCEEEEeCCCChHHHHHHHHHhcCCC--cceEEecCCCch-hhhhhh--hccc
Confidence 5 477777654332 222 348899999999765 467888887652 223333444553 111111 1111
Q ss_pred hhHHHHHHHHHHHHHHHH--HhCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhh
Q 000756 712 PLQRFQLMNDLCYEKVVA--VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDL 789 (1300)
Q Consensus 712 ~~~~~~~~~~~~~~~i~~--~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L 789 (1300)
...+ .. .+.+ ....++.||||.||+.++.+|.+|...+
T Consensus 215 ~~~q------~~--fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g-------------------------------- 254 (590)
T COG0514 215 PSDQ------LA--FLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNG-------------------------------- 254 (590)
T ss_pred HHHH------HH--HHHhhccccCCCeEEEEeeHHhHHHHHHHHHHCC--------------------------------
Confidence 1111 11 1221 2235679999999999999999998764
Q ss_pred hhhhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhh
Q 000756 790 KDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLG 869 (1300)
Q Consensus 790 ~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~G 869 (1300)
..+++|||||+..+|..+++.|..+.++|+|||.++++|||-|+++.||| ||.|. |+.+|.|-+|
T Consensus 255 -----~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH----~~lP~------s~EsYyQE~G 319 (590)
T COG0514 255 -----ISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIH----YDLPG------SIESYYQETG 319 (590)
T ss_pred -----CceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEE----ecCCC------CHHHHHHHHh
Confidence 34688999999999999999999999999999999999999999999999 99887 9999999999
Q ss_pred ccCCCCCCCceEEEEEeCCCcHHHHHHhhcCCCC
Q 000756 870 RAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLP 903 (1300)
Q Consensus 870 RAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~lP 903 (1300)
||||.| .+..|++++.+.+......++.+..|
T Consensus 320 RAGRDG--~~a~aill~~~~D~~~~~~~i~~~~~ 351 (590)
T COG0514 320 RAGRDG--LPAEAILLYSPEDIRWQRYLIEQSKP 351 (590)
T ss_pred hccCCC--CcceEEEeeccccHHHHHHHHHhhcc
Confidence 999998 89999999999998877777777666
No 66
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=2.6e-33 Score=305.49 Aligned_cols=335 Identities=20% Similarity=0.274 Sum_probs=246.4
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCc
Q 000756 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (1300)
Q Consensus 482 Lp~~~~~~f--~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~ 559 (1300)
+|.-+...+ +|+.+|||||.+-+|.++.+++ ++-.|-||||||++|.||++-........-......++--++|||.
T Consensus 177 FP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRD-mIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPS 255 (610)
T KOG0341|consen 177 FPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRD-MIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPS 255 (610)
T ss_pred CCHHHHHHHHhcCCCCCCceeecCcceEeecCc-eeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCc
Confidence 354444444 7999999999999999998855 9999999999999999987654433211111122357789999999
Q ss_pred HHHHHHHHHHHhhhcccC------CcEEEEEeCCCccchhh---hccceEEEECcchH-HHHHhhcCCCcccccccEEEE
Q 000756 560 KALVAEVVGNLSNRLQMY------DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLII 629 (1300)
Q Consensus 560 kaLa~q~~~~~~~~l~~~------gi~V~~ltGd~~~~~~~---~~~~~IIV~TPekl-d~l~r~~~~~~~l~~v~liIi 629 (1300)
|+||.|.++-+...+..+ .++.....|+.....+. ..+.+|+|+||+++ |++.++.. .+.-.+++.+
T Consensus 256 RELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~---sLd~CRyL~l 332 (610)
T KOG0341|consen 256 RELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIM---SLDACRYLTL 332 (610)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhc---cHHHHHHhhh
Confidence 999999988777665432 35677788888776543 46899999999997 77777765 4667899999
Q ss_pred eccccccc-CChhHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCcccccceeeEeeee
Q 000756 630 DEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQ 708 (1300)
Q Consensus 630 DEaH~l~d-~rg~~le~iv~rl~~~~~~~~~~~riV~LSATlpn~~dva~~L~~~~~~~~~~f~~~~rpv~l~~~~~~~~ 708 (1300)
|||+.+.| ++...+..++... ....|.+++|||+|. .+..|-+.... .|+.+..---|..
T Consensus 333 DEADRmiDmGFEddir~iF~~F-------K~QRQTLLFSATMP~--KIQ~FAkSALV----------KPvtvNVGRAGAA 393 (610)
T KOG0341|consen 333 DEADRMIDMGFEDDIRTIFSFF-------KGQRQTLLFSATMPK--KIQNFAKSALV----------KPVTVNVGRAGAA 393 (610)
T ss_pred hhHHHHhhccchhhHHHHHHHH-------hhhhheeeeeccccH--HHHHHHHhhcc----------cceEEeccccccc
Confidence 99999998 5666676666654 345678999999984 55555554322 2332222111211
Q ss_pred cCchhHHH---HHHHHHHHHHHHHHhC--CCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhc
Q 000756 709 VKKPLQRF---QLMNDLCYEKVVAVAG--KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDM 783 (1300)
Q Consensus 709 ~~~~~~~~---~~~~~~~~~~i~~~~~--~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~ 783 (1300)
.-+..+.. ..-++++| ++++.. ..|+||||..+.++..+..+|--.+.+
T Consensus 394 sldViQevEyVkqEaKiVy--lLeCLQKT~PpVLIFaEkK~DVD~IhEYLLlKGVE------------------------ 447 (610)
T KOG0341|consen 394 SLDVIQEVEYVKQEAKIVY--LLECLQKTSPPVLIFAEKKADVDDIHEYLLLKGVE------------------------ 447 (610)
T ss_pred chhHHHHHHHHHhhhhhhh--HHHHhccCCCceEEEeccccChHHHHHHHHHccce------------------------
Confidence 11111111 11122222 233332 579999999999998888877554422
Q ss_pred ccchhhhhhhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHH
Q 000756 784 VKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLD 863 (1300)
Q Consensus 784 ~~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d 863 (1300)
...+|||-++++|....+.|+.|+-.|||||++++.|+|+|++.+||+ ||.+. .+..
T Consensus 448 -------------avaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVIN----yDMP~------eIEN 504 (610)
T KOG0341|consen 448 -------------AVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVIN----YDMPE------EIEN 504 (610)
T ss_pred -------------eEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhcc----CCChH------HHHH
Confidence 345699999999999999999999999999999999999999999999 99776 7899
Q ss_pred HHHhhhccCCCCCCCceEEEEEeCCCc
Q 000756 864 IMQMLGRAGRPQYDSYGEGIIITGHSE 890 (1300)
Q Consensus 864 ~lQr~GRAGR~g~d~~G~~iil~~~~~ 890 (1300)
|+||+||+||.| +.|.+..|.+...
T Consensus 505 YVHRIGRTGRsg--~~GiATTfINK~~ 529 (610)
T KOG0341|consen 505 YVHRIGRTGRSG--KTGIATTFINKNQ 529 (610)
T ss_pred HHHHhcccCCCC--Ccceeeeeecccc
Confidence 999999999998 8999988887654
No 67
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=6.5e-33 Score=318.51 Aligned_cols=330 Identities=18% Similarity=0.281 Sum_probs=257.1
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHH
Q 000756 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1300)
Q Consensus 491 ~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~ 570 (1300)
.+|..+++||..|||.++.+-+ +||.|..|+|||++|..++++.+... .....+++++|||++|.|+...+
T Consensus 43 n~f~~ptkiQaaAIP~~~~kmD-liVQaKSGTGKTlVfsv~av~sl~~~--------~~~~q~~Iv~PTREiaVQI~~tv 113 (980)
T KOG4284|consen 43 NAFALPTKIQAAAIPAIFSKMD-LIVQAKSGTGKTLVFSVLAVESLDSR--------SSHIQKVIVTPTREIAVQIKETV 113 (980)
T ss_pred hcccCCCchhhhhhhhhhcccc-eEEEecCCCCceEEEEeeeehhcCcc--------cCcceeEEEecchhhhhHHHHHH
Confidence 4789999999999999988755 99999999999999988888776543 23568999999999999999999
Q ss_pred hhhcccC-CcEEEEEeCCCccch--hhhccceEEEECcchHHHHHhhcCCCcccccccEEEEeccccccc--CChhHHHH
Q 000756 571 SNRLQMY-DVKVRELSGDQTLTR--QQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD--NRGPVLES 645 (1300)
Q Consensus 571 ~~~l~~~-gi~V~~ltGd~~~~~--~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d--~rg~~le~ 645 (1300)
.+....+ |.++..+.|++.... ..+..++|+|+||+++..|..... ...+.++|+|+|||+.|.+ .+...+..
T Consensus 114 ~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~--~n~s~vrlfVLDEADkL~~t~sfq~~In~ 191 (980)
T KOG4284|consen 114 RKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGA--MNMSHVRLFVLDEADKLMDTESFQDDINI 191 (980)
T ss_pred HHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcC--CCccceeEEEeccHHhhhchhhHHHHHHH
Confidence 9877644 899999999987654 346789999999999866665543 4578899999999999987 35555555
Q ss_pred HHHHHHHHHhhccCCeeEEEEcccCCC--hHHHHHHHhccccCceEEecCCc-ccccceeeEeeeecC-chhHHHHHHHH
Q 000756 646 IVARTVRQIETTKEHIRLVGLSATLPN--YEDVALFLRVNLEKGLFYFDNSY-RPVPLSQQYIGIQVK-KPLQRFQLMND 721 (1300)
Q Consensus 646 iv~rl~~~~~~~~~~~riV~LSATlpn--~~dva~~L~~~~~~~~~~f~~~~-rpv~l~~~~~~~~~~-~~~~~~~~~~~ 721 (1300)
|+. ..+...|++++|||-|. ...++.|++.. .++.|..+. .-..+.|++...... ...+.+..+..
T Consensus 192 ii~-------slP~~rQv~a~SATYp~nLdn~Lsk~mrdp---~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq 261 (980)
T KOG4284|consen 192 IIN-------SLPQIRQVAAFSATYPRNLDNLLSKFMRDP---ALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQ 261 (980)
T ss_pred HHH-------hcchhheeeEEeccCchhHHHHHHHHhccc---ceeecccCCceeechhheeeeccCCcchHHHHHHHHH
Confidence 544 45778899999999884 23456666532 233343332 224566666554443 33344444433
Q ss_pred HHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEec
Q 000756 722 LCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHH 801 (1300)
Q Consensus 722 ~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~H 801 (1300)
. +..+....+-.|+||||+....|+.+|..|...++ .+.++.
T Consensus 262 ~-L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~-------------------------------------d~~~IS 303 (980)
T KOG4284|consen 262 K-LTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGL-------------------------------------DVTFIS 303 (980)
T ss_pred H-HHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCC-------------------------------------CeEEec
Confidence 3 23344555567999999999999999999887653 356679
Q ss_pred CCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCCCCCCceE
Q 000756 802 AGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGE 881 (1300)
Q Consensus 802 agl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d~~G~ 881 (1300)
|.|++.+|..+++.++.-..+|||+|+..+||||-|.++.||+ .|++. ....|+||+|||||-| ..|.
T Consensus 304 gaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVN----iD~p~------d~eTY~HRIGRAgRFG--~~G~ 371 (980)
T KOG4284|consen 304 GAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVN----IDAPA------DEETYFHRIGRAGRFG--AHGA 371 (980)
T ss_pred cccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEe----cCCCc------chHHHHHHhhhccccc--ccce
Confidence 9999999999999999999999999999999999999999998 77765 6788999999999955 9999
Q ss_pred EEEEeCCCcH
Q 000756 882 GIIITGHSEL 891 (1300)
Q Consensus 882 ~iil~~~~~~ 891 (1300)
++.++...+.
T Consensus 372 aVT~~~~~~e 381 (980)
T KOG4284|consen 372 AVTLLEDERE 381 (980)
T ss_pred eEEEeccchh
Confidence 9998776543
No 68
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=9.8e-32 Score=341.98 Aligned_cols=349 Identities=22% Similarity=0.292 Sum_probs=265.1
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHH
Q 000756 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1300)
Q Consensus 491 ~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~ 570 (1300)
.|+..|+++|.+|+..+.++ +|+||+.|||||||.+|++||+..+.+.. ..++|||.||+|||+.+.++|
T Consensus 66 ~g~~~lY~HQ~~A~~~~~~G-~~vvVtTgTgSGKTe~FllPIld~~l~~~---------~a~AL~lYPtnALa~DQ~~rl 135 (851)
T COG1205 66 AGIERLYSHQVDALRLIREG-RNVVVTTGTGSGKTESFLLPILDHLLRDP---------SARALLLYPTNALANDQAERL 135 (851)
T ss_pred hccccccHHHHHHHHHHHCC-CCEEEECCCCCchhHHHHHHHHHHHhhCc---------CccEEEEechhhhHhhHHHHH
Confidence 56777999999999988776 78999999999999999999999998753 237999999999999999999
Q ss_pred hhhcccCC--cEEEEEeCCCccchhh---hccceEEEECcchHHH-HHhhc-CCCcccccccEEEEecccccccCChhHH
Q 000756 571 SNRLQMYD--VKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDI-ITRKS-GDRTYTQLVKLLIIDEIHLLHDNRGPVL 643 (1300)
Q Consensus 571 ~~~l~~~g--i~V~~ltGd~~~~~~~---~~~~~IIV~TPekld~-l~r~~-~~~~~l~~v~liIiDEaH~l~d~rg~~l 643 (1300)
++....++ +.+..++||...+... .+.++|++|||.+|+. ++|.. .....+.++++||+||+|....-+|..+
T Consensus 136 ~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~v 215 (851)
T COG1205 136 RELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEV 215 (851)
T ss_pred HHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHH
Confidence 99988776 8999999999888773 5789999999999977 55544 2345567799999999999988899999
Q ss_pred HHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHH-hccccCceEEecCCcccccceeeEeeeecCchhH------HH
Q 000756 644 ESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFL-RVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQ------RF 716 (1300)
Q Consensus 644 e~iv~rl~~~~~~~~~~~riV~LSATlpn~~dva~~L-~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~------~~ 716 (1300)
..++.|+++.+...+.++++|+.|||+.|+.+++.-+ +... . ..++.+..|-.....+...+...... ..
T Consensus 216 A~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f-~--~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~ 292 (851)
T COG1205 216 ALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDF-E--VPVDEDGSPRGLRYFVRREPPIRELAESIRRSAL 292 (851)
T ss_pred HHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCcc-e--eeccCCCCCCCceEEEEeCCcchhhhhhcccchH
Confidence 9999999999998889999999999999987776544 4321 1 11444445544444443333111111 11
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCC
Q 000756 717 QLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYG 796 (1300)
Q Consensus 717 ~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~g 796 (1300)
.....++- .....+-++|+|+.||+.++.+....+....... ..+...
T Consensus 293 ~~~~~~~~---~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~-----------------------------~~l~~~ 340 (851)
T COG1205 293 AELATLAA---LLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREG-----------------------------GKLLDA 340 (851)
T ss_pred HHHHHHHH---HHHHcCceEEEEEehhhhhhhhhhchhHHHhhcc-----------------------------hhhhhh
Confidence 11111111 1112367999999999999988765554432211 011134
Q ss_pred eEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCCCC
Q 000756 797 FAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQY 876 (1300)
Q Consensus 797 v~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~ 876 (1300)
|..|||+|.+.+|..++..|+.|++.++++|++|+-|||+-++..||....+.+ |..+++||+|||||.+
T Consensus 341 v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~---------s~~~~~Q~~GRaGR~~- 410 (851)
T COG1205 341 VSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGV---------SVLSFRQRAGRAGRRG- 410 (851)
T ss_pred eeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCc---------hHHHHHHhhhhccCCC-
Confidence 788999999999999999999999999999999999999999999997322221 7889999999999987
Q ss_pred CCceEEEEEeCCCcH-HHHH
Q 000756 877 DSYGEGIIITGHSEL-RYYL 895 (1300)
Q Consensus 877 d~~G~~iil~~~~~~-~~y~ 895 (1300)
..+..+++...+-. .||.
T Consensus 411 -~~~l~~~v~~~~~~d~yy~ 429 (851)
T COG1205 411 -QESLVLVVLRSDPLDSYYL 429 (851)
T ss_pred -CCceEEEEeCCCccchhhh
Confidence 55666666554433 3443
No 69
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=1.9e-31 Score=314.14 Aligned_cols=301 Identities=21% Similarity=0.264 Sum_probs=201.7
Q ss_pred HHHHHHHHHHcCCC-eEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhccc-
Q 000756 499 VQSRVYKSALSSAD-NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQM- 576 (1300)
Q Consensus 499 iQ~~~i~~~l~~~~-nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~- 576 (1300)
+|.++|+++++++. +++++||||||||.+|+++++.. ..+++|++|+++|+.+++++|.+.+..
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~--------------~~~~~~~~P~~aL~~~~~~~~~~~~~~~ 66 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG--------------ENDTIALYPTNALIEDQTEAIKEFVDVF 66 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc--------------CCCEEEEeChHHHHHHHHHHHHHHHHhc
Confidence 49999999999874 68999999999999999998841 225899999999999999999998753
Q ss_pred ---CCcEEEEEeCCCccchh-----------------------hhccceEEEECcchHHHHHhhcC-C-----Ccccccc
Q 000756 577 ---YDVKVRELSGDQTLTRQ-----------------------QIEETQIIVTTPEKWDIITRKSG-D-----RTYTQLV 624 (1300)
Q Consensus 577 ---~gi~V~~ltGd~~~~~~-----------------------~~~~~~IIV~TPekld~l~r~~~-~-----~~~l~~v 624 (1300)
.++.+..++|+...+.+ ....+.|++|||+.|+.++|.+. . ..++..+
T Consensus 67 ~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~ 146 (357)
T TIGR03158 67 KPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKF 146 (357)
T ss_pred CCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCC
Confidence 36778888887332200 01357899999999998888652 1 1246889
Q ss_pred cEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhcc--ccCce-------EEec---
Q 000756 625 KLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN--LEKGL-------FYFD--- 692 (1300)
Q Consensus 625 ~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LSATlpn~~dva~~L~~~--~~~~~-------~~f~--- 692 (1300)
++|||||+|.+.......+...+..+ ..+.......|+|+||||++. .+..++... ....+ +.|.
T Consensus 147 ~~iV~DE~H~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~i~lSAT~~~--~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~ 223 (357)
T TIGR03158 147 STVIFDEFHLYDAKQLVGMLFLLAYM-QLIRFFECRRKFVFLSATPDP--ALILRLQNAKQAGVKIAPIDGEKYQFPDNP 223 (357)
T ss_pred CEEEEecccccCcccchhhhhhhHHH-HHHHhhhcCCcEEEEecCCCH--HHHHHHHhccccCceeeeecCcccccCCCh
Confidence 99999999998754333333222211 222222335799999999874 444444321 01111 1111
Q ss_pred --------CCcccc--cceeeEeeeecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhcccc
Q 000756 693 --------NSYRPV--PLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDT 762 (1300)
Q Consensus 693 --------~~~rpv--~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~ 762 (1300)
..+||+ ++.+.+.. ........+..+.+.+.+.+ ....++++||||+|++.+..++..|++.+.
T Consensus 224 ~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~-~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~---- 297 (357)
T TIGR03158 224 ELEADNKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERF-RQLPGERGAIILDSLDEVNRLSDLLQQQGL---- 297 (357)
T ss_pred hhhccccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHH-hccCCCeEEEEECCHHHHHHHHHHHhhhCC----
Confidence 023443 34443433 11111111222222222211 112367999999999999999999876421
Q ss_pred cccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEE
Q 000756 763 LGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVI 842 (1300)
Q Consensus 763 l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vV 842 (1300)
...+..+||.+++.+|..+ +..+|||||+++++|||+|.+ +|
T Consensus 298 -------------------------------~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~v 339 (357)
T TIGR03158 298 -------------------------------GDDIGRITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WL 339 (357)
T ss_pred -------------------------------CceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eE
Confidence 1235678999999998754 478999999999999999987 44
Q ss_pred EecceeccCCCCCcccCCHHHHHHhhhccC
Q 000756 843 IKGTQIYNPEKGAWTELSPLDIMQMLGRAG 872 (1300)
Q Consensus 843 I~~t~~yd~~~g~~~~~S~~d~lQr~GRAG 872 (1300)
| ++|. +..+|+||+||+|
T Consensus 340 i-----~~p~-------~~~~yiqR~GR~g 357 (357)
T TIGR03158 340 I-----FSAR-------DAAAFWQRLGRLG 357 (357)
T ss_pred E-----ECCC-------CHHHHhhhcccCC
Confidence 4 3443 6889999999998
No 70
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=7.6e-31 Score=299.48 Aligned_cols=340 Identities=22% Similarity=0.346 Sum_probs=237.8
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHH
Q 000756 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1300)
Q Consensus 491 ~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~ 570 (1300)
++.-+++.+|..++..++.+ |.||+.|||-|||++|++.|...+... .+ ++|+++|||-|+.|.+..+
T Consensus 11 p~~ie~R~YQ~~i~a~al~~--NtLvvlPTGLGKT~IA~~V~~~~l~~~---------~~-kvlfLAPTKPLV~Qh~~~~ 78 (542)
T COG1111 11 PNTIEPRLYQLNIAAKALFK--NTLVVLPTGLGKTFIAAMVIANRLRWF---------GG-KVLFLAPTKPLVLQHAEFC 78 (542)
T ss_pred cccccHHHHHHHHHHHHhhc--CeEEEecCCccHHHHHHHHHHHHHHhc---------CC-eEEEecCCchHHHHHHHHH
Confidence 34557889999999998876 799999999999999999999888775 23 8999999999999999999
Q ss_pred hhhcccCCcEEEEEeCCCccchh--hhccceEEEECcchH-HHHHhhcCCCcccccccEEEEecccccccCChhHHHHHH
Q 000756 571 SNRLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIV 647 (1300)
Q Consensus 571 ~~~l~~~gi~V~~ltGd~~~~~~--~~~~~~IIV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv 647 (1300)
.+.++-..-.+..+||....+.+ .+...+|+|+||... .-+.. .+..+.++.|+||||||.-.... .+-.+.
T Consensus 79 ~~v~~ip~~~i~~ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~---Grid~~dv~~lifDEAHRAvGny--AYv~Va 153 (542)
T COG1111 79 RKVTGIPEDEIAALTGEVRPEEREELWAKKKVFVATPQVVENDLKA---GRIDLDDVSLLIFDEAHRAVGNY--AYVFVA 153 (542)
T ss_pred HHHhCCChhheeeecCCCChHHHHHHHhhCCEEEeccHHHHhHHhc---CccChHHceEEEechhhhccCcc--hHHHHH
Confidence 99876545578999999988754 357889999999975 22222 22456789999999999865332 222233
Q ss_pred HHHHHHHhhccCCeeEEEEcccCCC----hHHHHHHHhccccCceEEe---cCCcccc--cceeeEeeeecC--------
Q 000756 648 ARTVRQIETTKEHIRLVGLSATLPN----YEDVALFLRVNLEKGLFYF---DNSYRPV--PLSQQYIGIQVK-------- 710 (1300)
Q Consensus 648 ~rl~~~~~~~~~~~riV~LSATlpn----~~dva~~L~~~~~~~~~~f---~~~~rpv--~l~~~~~~~~~~-------- 710 (1300)
...+ ....+++++|||||..+ ...|.+-|+... +.+- +++.+|. ..+..++.+...
T Consensus 154 ~~y~----~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~---vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~ 226 (542)
T COG1111 154 KEYL----RSAKNPLILGLTASPGSDLEKIQEVVENLGIEK---VEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRD 226 (542)
T ss_pred HHHH----HhccCceEEEEecCCCCCHHHHHHHHHhCCcce---EEEecCCCccHHHhhccceeEEEeccCcHHHHHHHH
Confidence 3232 24678899999999654 234555555431 1111 1122221 111111111000
Q ss_pred ----------------------c---------------------hhHHHHHHH------H--------------HH----
Q 000756 711 ----------------------K---------------------PLQRFQLMN------D--------------LC---- 723 (1300)
Q Consensus 711 ----------------------~---------------------~~~~~~~~~------~--------------~~---- 723 (1300)
. ....+..|. + ..
T Consensus 227 ~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl 306 (542)
T COG1111 227 LLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYL 306 (542)
T ss_pred HHHHHHHHHHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHH
Confidence 0 000000000 0 00
Q ss_pred -----------------------------------------------HHHHHHHh---CCCeEEEEEcChHHHHHHHHHH
Q 000756 724 -----------------------------------------------YEKVVAVA---GKHQVLIFVHSRKETAKTARAI 753 (1300)
Q Consensus 724 -----------------------------------------------~~~i~~~~---~~~~vLVFv~sr~~~~~~a~~L 753 (1300)
.+.+.+.. ++.++|||++.|..++.++..|
T Consensus 307 ~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L 386 (542)
T COG1111 307 EKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFL 386 (542)
T ss_pred HHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHH
Confidence 00111222 2468999999999999999999
Q ss_pred HHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccc
Q 000756 754 RDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWG 833 (1300)
Q Consensus 754 ~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~G 833 (1300)
...+.... ..|+.. +-.-+..||++.++..+++.|+.|..+|||||++.+.|
T Consensus 387 ~~~~~~~~--~rFiGQ--------------------------a~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEG 438 (542)
T COG1111 387 KKIGIKAR--VRFIGQ--------------------------ASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEG 438 (542)
T ss_pred HhcCCcce--eEEeec--------------------------cccccccccCHHHHHHHHHHHhcCCceEEEEccccccc
Confidence 88765432 234332 11223589999999999999999999999999999999
Q ss_pred cCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCCCCCCceEEEEEeCCC--cHHHHH
Q 000756 834 VNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS--ELRYYL 895 (1300)
Q Consensus 834 VdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d~~G~~iil~~~~--~~~~y~ 895 (1300)
+|+|.++.||. |+|-. |...++||.||+||. +.|.++++.+.. +..||.
T Consensus 439 LDIp~vDlVif----YEpvp------SeIR~IQR~GRTGR~---r~Grv~vLvt~gtrdeayy~ 489 (542)
T COG1111 439 LDIPEVDLVIF----YEPVP------SEIRSIQRKGRTGRK---RKGRVVVLVTEGTRDEAYYY 489 (542)
T ss_pred CCCCcccEEEE----ecCCc------HHHHHHHhhCccccC---CCCeEEEEEecCchHHHHHH
Confidence 99999999997 99876 889999999999995 799999998877 344444
No 71
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=5.7e-31 Score=327.20 Aligned_cols=321 Identities=17% Similarity=0.158 Sum_probs=211.4
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHH
Q 000756 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1300)
Q Consensus 491 ~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~ 570 (1300)
.||. |+|||.++++.++.+..+++++||||||||.++.++++.. ... . ....++||++|||+||.|+++.+
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~~--~-----~~~~rLv~~vPtReLa~Qi~~~~ 82 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EIG--A-----KVPRRLVYVVNRRTVVDQVTEEA 82 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-ccc--c-----cccceEEEeCchHHHHHHHHHHH
Confidence 4787 9999999999999887678889999999998765444422 111 0 12346788999999999999999
Q ss_pred hhhcccC-----------------------CcEEEEEeCCCccchhhh---ccceEEEECcchHHHHHhhcC--------
Q 000756 571 SNRLQMY-----------------------DVKVRELSGDQTLTRQQI---EETQIIVTTPEKWDIITRKSG-------- 616 (1300)
Q Consensus 571 ~~~l~~~-----------------------gi~V~~ltGd~~~~~~~~---~~~~IIV~TPekld~l~r~~~-------- 616 (1300)
.+..+.+ +++|..++|+.....+.. ..++|||+|++ .+.++..
T Consensus 83 ~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D---~i~sr~L~~gYg~~~ 159 (844)
T TIGR02621 83 EKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVD---MIGSRLLFSGYGCGF 159 (844)
T ss_pred HHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHH---HHcCCcccccccccc
Confidence 8877644 488999999988766542 46899999964 5544332
Q ss_pred -----CCcccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEEcccCCC-hHHHHHHHhccccCceEE
Q 000756 617 -----DRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFY 690 (1300)
Q Consensus 617 -----~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LSATlpn-~~dva~~L~~~~~~~~~~ 690 (1300)
....+++++++|+|||| +...+...++.|+..+.+ .....+.|+++||||+|. ..++...+..++. .+.
T Consensus 160 ~~~pi~ag~L~~v~~LVLDEAD-Ld~gF~~~l~~Il~~l~r--p~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~--~i~ 234 (844)
T TIGR02621 160 KSRPLHAGFLGQDALIVHDEAH-LEPAFQELLKQIMNEQQR--PPDFLPLRVVELTATSRTDGPDRTTLLSAEDY--KHP 234 (844)
T ss_pred ccccchhhhhccceEEEEehhh-hccccHHHHHHHHHhccc--CcccccceEEEEecCCCccHHHHHHHHccCCc--eee
Confidence 11136889999999999 443555555555543210 011123689999999985 2233333332221 111
Q ss_pred ecCCcccccceeeEeeeecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccC
Q 000756 691 FDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKED 770 (1300)
Q Consensus 691 f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~ 770 (1300)
.........-..+++..... .++..+...+.... ...++++||||||++.|..++..|...
T Consensus 235 V~~~~l~a~ki~q~v~v~~e---~Kl~~lv~~L~~ll--~e~g~~vLVF~NTv~~Aq~L~~~L~~~-------------- 295 (844)
T TIGR02621 235 VLKKRLAAKKIVKLVPPSDE---KFLSTMVKELNLLM--KDSGGAILVFCRTVKHVRKVFAKLPKE-------------- 295 (844)
T ss_pred cccccccccceEEEEecChH---HHHHHHHHHHHHHH--hhCCCcEEEEECCHHHHHHHHHHHHhc--------------
Confidence 11111111111122222211 11211111111111 123678999999999999999988653
Q ss_pred chhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHH-----HHHHHHhC----CC-------ccEEEecccccccc
Q 000756 771 SVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQ-----LVEDLFGD----GH-------VQVLVSTATLAWGV 834 (1300)
Q Consensus 771 ~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~-----~ve~~F~~----g~-------i~VLVaT~tla~GV 834 (1300)
|+..+||+|++.+|. .+++.|++ |. .+|||||+++++||
T Consensus 296 -------------------------g~~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGL 350 (844)
T TIGR02621 296 -------------------------KFELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGV 350 (844)
T ss_pred -------------------------CCeEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcc
Confidence 236779999999999 78899987 44 78999999999999
Q ss_pred CCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCCCCCCceEEEEE
Q 000756 835 NLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885 (1300)
Q Consensus 835 dlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d~~G~~iil 885 (1300)
||+. .+||+ +.. +..+|+||+||+||.|....+.++++
T Consensus 351 DId~-d~VI~----d~a--------P~esyIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 351 NISA-DHLVC----DLA--------PFESMQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred cCCc-ceEEE----CCC--------CHHHHHHHhcccCCCCCCCCceEEEE
Confidence 9998 56664 332 46799999999999874333434444
No 72
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.98 E-value=2e-31 Score=307.95 Aligned_cols=450 Identities=17% Similarity=0.163 Sum_probs=317.6
Q ss_pred HHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcccCC
Q 000756 499 VQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYD 578 (1300)
Q Consensus 499 iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~~g 578 (1300)
+-.+.+. +.+.+..++|.|.||||||+.....+...-.. ..+.+|-|..|+|-.|..++.++.+- +|
T Consensus 269 ykdell~-av~e~QVLiI~GeTGSGKTTQiPQyL~EaGyt---------k~gk~IgcTQPRRVAAmSVAaRVA~E---Mg 335 (902)
T KOG0923|consen 269 YKDELLK-AVKEHQVLIIVGETGSGKTTQIPQYLYEAGYT---------KGGKKIGCTQPRRVAAMSVAARVAEE---MG 335 (902)
T ss_pred hHHHHHH-HHHhCcEEEEEcCCCCCccccccHHHHhcccc---------cCCceEeecCcchHHHHHHHHHHHHH---hC
Confidence 3334444 55677899999999999999877665543221 23556999999999999999888664 45
Q ss_pred cEEEEEeCCC-ccchhhhccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccCChhHHHHHHHHHHHHHhhc
Q 000756 579 VKVRELSGDQ-TLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETT 657 (1300)
Q Consensus 579 i~V~~ltGd~-~~~~~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~ 657 (1300)
++.+.-.|-+ ...+-....+-|-++|.+ +|+|.......+..+++|||||||.-. -.. .|+-.+.+.+...
T Consensus 336 vkLG~eVGYsIRFEdcTSekTvlKYMTDG---mLlREfL~epdLasYSViiiDEAHERT----L~T-DILfgLvKDIar~ 407 (902)
T KOG0923|consen 336 VKLGHEVGYSIRFEDCTSEKTVLKYMTDG---MLLREFLSEPDLASYSVIIVDEAHERT----LHT-DILFGLVKDIARF 407 (902)
T ss_pred cccccccceEEEeccccCcceeeeeecch---hHHHHHhccccccceeEEEeehhhhhh----hhh-hHHHHHHHHHHhh
Confidence 5554444421 222222346889999999 778887777788999999999999732 122 2333344445556
Q ss_pred cCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCcccccceeeEeeeecCchhHHHHHHHHHHHHHHHHHhCCCeEE
Q 000756 658 KEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVL 737 (1300)
Q Consensus 658 ~~~~riV~LSATlpn~~dva~~L~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vL 737 (1300)
.+..+++..|||+ +++.+..|+...| +|.+.+ |..|+..+|...++..+ +.+....+++.. ...+.+.+|
T Consensus 408 RpdLKllIsSAT~-DAekFS~fFDdap---IF~iPG--RRyPVdi~Yt~~PEAdY---ldAai~tVlqIH-~tqp~GDIL 477 (902)
T KOG0923|consen 408 RPDLKLLISSATM-DAEKFSAFFDDAP---IFRIPG--RRYPVDIFYTKAPEADY---LDAAIVTVLQIH-LTQPLGDIL 477 (902)
T ss_pred CCcceEEeecccc-CHHHHHHhccCCc---EEeccC--cccceeeecccCCchhH---HHHHHhhheeeE-eccCCccEE
Confidence 7899999999997 8899999998654 666655 45555666665555443 222222222211 222368899
Q ss_pred EEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHHHHHHHh
Q 000756 738 IFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFG 817 (1300)
Q Consensus 738 VFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~ 817 (1300)
||.....+.+.+...|.+....-+.- .++ .-|..+|+.|+.+.+..|++--.
T Consensus 478 VFltGQeEIEt~~e~l~~~~~~LGsk-------------------------i~e---liv~PiYaNLPselQakIFePtP 529 (902)
T KOG0923|consen 478 VFLTGQEEIETVKENLKERCRRLGSK-------------------------IRE---LIVLPIYANLPSELQAKIFEPTP 529 (902)
T ss_pred EEeccHHHHHHHHHHHHHHHHHhccc-------------------------cce---EEEeeccccCChHHHHhhcCCCC
Confidence 99999999888888887665322110 111 22677899999999999999999
Q ss_pred CCCccEEEeccccccccCCCCcEEEEecc----eeccCCCCC----cccCCHHHHHHhhhccCCCCCCCceEEEEEeCCC
Q 000756 818 DGHVQVLVSTATLAWGVNLPAHTVIIKGT----QIYNPEKGA----WTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS 889 (1300)
Q Consensus 818 ~g~i~VLVaT~tla~GVdlPav~vVI~~t----~~yd~~~g~----~~~~S~~d~lQr~GRAGR~g~d~~G~~iil~~~~ 889 (1300)
.|..+|++||++++.++.|+++.+||+-. ..|+|.+|- .+++|.++..||+|||||.| +|+|+.+++..
T Consensus 530 ~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg---PGKCfRLYt~~ 606 (902)
T KOG0923|consen 530 PGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG---PGKCFRLYTAW 606 (902)
T ss_pred CCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC---CCceEEeechh
Confidence 99999999999999999999999999842 568888883 47899999999999999997 99999999865
Q ss_pred cHHHHHHhhcCCCCcccchhHhHHHHHHHHHHhccccCHHHHHHHHHhhHHHHHHhcCCcccCCCccccccchhhhhHHH
Q 000756 890 ELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRA 969 (1300)
Q Consensus 890 ~~~~y~~ll~~~lPiES~l~~~l~d~lnaEI~~g~i~~~~d~~~wL~~T~ly~r~~~nP~~y~~~~~~~~~~~~l~~~~~ 969 (1300)
...+.+.. ...| ||..-++.|+ + | +++. .|+.+ +.+-+.+..+..
T Consensus 607 aY~~eLE~--~t~P---------------EIqRtnL~nv---V-------L---~LkS---LGI~D--l~~FdFmDpPp~ 651 (902)
T KOG0923|consen 607 AYEHELEE--MTVP---------------EIQRTNLGNV---V-------L---LLKS---LGIHD--LIHFDFLDPPPT 651 (902)
T ss_pred hhhhhhcc--CCCc---------------ceeeccchhH---H-------H---HHHh---cCcch--hcccccCCCCCh
Confidence 43322211 1112 2222222221 1 0 0111 11111 122344555566
Q ss_pred HHHHHHHHHHHHCCCccccccCCceeeccccccccccccccccHHHHHhhcCCCCChHHHHHHhcCCcccccCcCCchHH
Q 000756 970 DLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEK 1049 (1300)
Q Consensus 970 ~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~ias~~yi~~~T~~~~~~~l~~~~~~~~il~ils~s~EF~~i~vR~~E~ 1049 (1300)
+.+..|++.|-..|++.-. ..+|.+||.||.|+++|...+++..+-+-.|+ .+|+.|.|+.+.+..+..|+.++
T Consensus 652 etL~~aLE~LyaLGALn~~-----GeLTk~GrrMaEfP~dPmlsKmi~as~ky~cs-~EiitiaamlS~~~svfyrpk~~ 725 (902)
T KOG0923|consen 652 ETLLKALEQLYALGALNHL-----GELTKLGRRMAEFPVDPMLSKMIVASEKYKCS-EEIITIAAMLSVGASVFYRPKDK 725 (902)
T ss_pred HHHHHHHHHHHHhhccccc-----cchhhhhhhhhhcCCCHHHHhHHhhhccccch-HHHHHHHHHHhcCchheecchhh
Confidence 7788999999999999633 46999999999999999999999988777766 78999999999999999998876
Q ss_pred HH
Q 000756 1050 ME 1051 (1300)
Q Consensus 1050 ~e 1051 (1300)
..
T Consensus 726 ~v 727 (902)
T KOG0923|consen 726 QV 727 (902)
T ss_pred hh
Confidence 54
No 73
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.97 E-value=9.5e-31 Score=310.45 Aligned_cols=301 Identities=19% Similarity=0.230 Sum_probs=195.5
Q ss_pred EEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcccCCcEEEEEeCCCccch-
Q 000756 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTR- 592 (1300)
Q Consensus 514 vLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~~gi~V~~ltGd~~~~~- 592 (1300)
++|+||||||||.+|++++++.+... ...+++|++|+++|+.|++++++..|+. .++.++|+.....
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~~~---------~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~ 69 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIKSQ---------KADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRI 69 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhC---------CCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHH
Confidence 79999999999999999999886543 2358999999999999999999987653 4454554332100
Q ss_pred --------------------hhhccceEEEECcchHH-HHHhhcCCC-cccc--cccEEEEecccccccCChhHHHHHHH
Q 000756 593 --------------------QQIEETQIIVTTPEKWD-IITRKSGDR-TYTQ--LVKLLIIDEIHLLHDNRGPVLESIVA 648 (1300)
Q Consensus 593 --------------------~~~~~~~IIV~TPekld-~l~r~~~~~-~~l~--~v~liIiDEaH~l~d~rg~~le~iv~ 648 (1300)
.....++|+|+||+++. .+.+..... ..+. ..++|||||+|.+.+.....+..++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~ 149 (358)
T TIGR01587 70 KEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLE 149 (358)
T ss_pred hccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 01124679999999863 333311110 0111 23789999999988642222333333
Q ss_pred HHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCccccc---c-eeeEeeeecCchhHHHHHHHHHHH
Q 000756 649 RTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVP---L-SQQYIGIQVKKPLQRFQLMNDLCY 724 (1300)
Q Consensus 649 rl~~~~~~~~~~~riV~LSATlpn~~dva~~L~~~~~~~~~~f~~~~rpv~---l-~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1300)
.+ . ....|+++||||+| +.+..|+...... .........+ . .+.+...... .......+..
T Consensus 150 ~l----~--~~~~~~i~~SATlp--~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~--- 214 (358)
T TIGR01587 150 VL----K--DNDVPILLMSATLP--KFLKEYAEKIGYV---EFNEPLDLKEERRFERHRFIKIESD-KVGEISSLER--- 214 (358)
T ss_pred HH----H--HcCCCEEEEecCch--HHHHHHHhcCCCc---ccccCCCCccccccccccceeeccc-cccCHHHHHH---
Confidence 32 2 34688999999998 4566666432111 0000000000 1 1111111111 0011111111
Q ss_pred HHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCC
Q 000756 725 EKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGM 804 (1300)
Q Consensus 725 ~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl 804 (1300)
.+.....++++||||++++.|+.++..|++.+.. ..+..+||+|
T Consensus 215 -l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~-----------------------------------~~~~~~h~~~ 258 (358)
T TIGR01587 215 -LLEFIKKGGKIAIIVNTVDRAQEFYQQLKENAPE-----------------------------------EEIMLLHSRF 258 (358)
T ss_pred -HHHHhhCCCeEEEEECCHHHHHHHHHHHHhhcCC-----------------------------------CeEEEEECCC
Confidence 1222234689999999999999999998765321 2478899999
Q ss_pred CHHHHHHH----HHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCCCCC--C
Q 000756 805 TRGDRQLV----EDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD--S 878 (1300)
Q Consensus 805 ~~~dR~~v----e~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d--~ 878 (1300)
++.+|..+ ++.|++|..+|||||+++++|||+|. .+||. |.. ++.+|+||+||+||.|.. .
T Consensus 259 ~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~~-~~vi~----~~~--------~~~~~iqr~GR~gR~g~~~~~ 325 (358)
T TIGR01587 259 TEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDISA-DVMIT----ELA--------PIDSLIQRLGRLHRYGRKNGE 325 (358)
T ss_pred CHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccCC-CEEEE----cCC--------CHHHHHHHhccccCCCCCCCC
Confidence 99999764 78899999999999999999999984 55554 332 577899999999998743 2
Q ss_pred ceEEEEEeCCCc
Q 000756 879 YGEGIIITGHSE 890 (1300)
Q Consensus 879 ~G~~iil~~~~~ 890 (1300)
.|..+++...++
T Consensus 326 ~~~~~v~~~~~~ 337 (358)
T TIGR01587 326 NFEVYIITIAPE 337 (358)
T ss_pred CCeEEEEeecCC
Confidence 358888876654
No 74
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=7.1e-30 Score=294.91 Aligned_cols=454 Identities=17% Similarity=0.184 Sum_probs=311.6
Q ss_pred HHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcc-cC
Q 000756 499 VQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MY 577 (1300)
Q Consensus 499 iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~-~~ 577 (1300)
.+.+.+. .+..++.++|.+.||||||+.....++..-.. +..-|.|..|+|..|..+++++..-++ .+
T Consensus 360 ~R~~ll~-~ir~n~vvvivgETGSGKTTQl~QyL~edGY~----------~~GmIGcTQPRRvAAiSVAkrVa~EM~~~l 428 (1042)
T KOG0924|consen 360 CRDQLLS-VIRENQVVVIVGETGSGKTTQLAQYLYEDGYA----------DNGMIGCTQPRRVAAISVAKRVAEEMGVTL 428 (1042)
T ss_pred HHHHHHH-HHhhCcEEEEEecCCCCchhhhHHHHHhcccc----------cCCeeeecCchHHHHHHHHHHHHHHhCCcc
Confidence 4555554 45667889999999999999876665543221 233689999999999999999887653 33
Q ss_pred CcEEEEEeCCCccchhhhccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccCChhHHHHHHHHHHHHHhhc
Q 000756 578 DVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETT 657 (1300)
Q Consensus 578 gi~V~~ltGd~~~~~~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~ 657 (1300)
|..|+.... +.+-....+.|-++|.+ +|+|.......+.++++||+||||.-. .-..++-.+++.+...
T Consensus 429 G~~VGYsIR---FEdvT~~~T~IkymTDG---iLLrEsL~d~~L~kYSviImDEAHERs-----lNtDilfGllk~~lar 497 (1042)
T KOG0924|consen 429 GDTVGYSIR---FEDVTSEDTKIKYMTDG---ILLRESLKDRDLDKYSVIIMDEAHERS-----LNTDILFGLLKKVLAR 497 (1042)
T ss_pred ccccceEEE---eeecCCCceeEEEeccc---hHHHHHhhhhhhhheeEEEechhhhcc-----cchHHHHHHHHHHHHh
Confidence 444443322 11222246889999999 778877656678899999999999832 2223333444544455
Q ss_pred cCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCcccccceeeEeeeecCchhHHHHHHHHHHHHHHHHHhCCCeEE
Q 000756 658 KEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVL 737 (1300)
Q Consensus 658 ~~~~riV~LSATlpn~~dva~~L~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vL 737 (1300)
..++++|..|||+ |++.++.|++..| .|+..+ |..|+...+...+...+ ..+....... +....+.+.+|
T Consensus 498 RrdlKliVtSATm-~a~kf~nfFgn~p---~f~IpG--RTyPV~~~~~k~p~eDY---Veaavkq~v~-Ihl~~~~Gdil 567 (1042)
T KOG0924|consen 498 RRDLKLIVTSATM-DAQKFSNFFGNCP---QFTIPG--RTYPVEIMYTKTPVEDY---VEAAVKQAVQ-IHLSGPPGDIL 567 (1042)
T ss_pred hccceEEEeeccc-cHHHHHHHhCCCc---eeeecC--CccceEEEeccCchHHH---HHHHHhhheE-eeccCCCCCEE
Confidence 6799999999998 8899999999443 455544 55555555544333221 2221111111 11222357899
Q ss_pred EEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHHHHHHHh
Q 000756 738 IFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFG 817 (1300)
Q Consensus 738 VFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~ 817 (1300)
||.+.+..++-++..+.........- ..-...|..+++.|+..-+..+++.-.
T Consensus 568 IfmtGqediE~t~~~i~~~l~ql~~~---------------------------~~~~L~vlpiYSQLp~dlQ~kiFq~a~ 620 (1042)
T KOG0924|consen 568 IFMTGQEDIECTCDIIKEKLEQLDSA---------------------------PTTDLAVLPIYSQLPADLQAKIFQKAE 620 (1042)
T ss_pred EecCCCcchhHHHHHHHHHHHhhhcC---------------------------CCCceEEEeehhhCchhhhhhhcccCC
Confidence 99999999998888887654332110 001234778899999999999999999
Q ss_pred CCCccEEEeccccccccCCCCcEEEEec----ceeccCCCC----CcccCCHHHHHHhhhccCCCCCCCceEEEEEeCCC
Q 000756 818 DGHVQVLVSTATLAWGVNLPAHTVIIKG----TQIYNPEKG----AWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS 889 (1300)
Q Consensus 818 ~g~i~VLVaT~tla~GVdlPav~vVI~~----t~~yd~~~g----~~~~~S~~d~lQr~GRAGR~g~d~~G~~iil~~~~ 889 (1300)
.|..+|+|||++++.++.+|++.+||+. -.+|+|..| ...++|.+...||.|||||.| +|.||.+++..
T Consensus 621 ~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~---pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 621 GGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG---PGTCYRLYTED 697 (1042)
T ss_pred CCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCC---Ccceeeehhhh
Confidence 9999999999999999999999999985 478999888 357899999999999999986 99999999864
Q ss_pred cHHHHHHhhcCCCCcccchhHhHHHHHHHHHHhccccCHHHHHHHHHhhHHHHHHhcCCcccCCCccccccchhhhhHHH
Q 000756 890 ELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRA 969 (1300)
Q Consensus 890 ~~~~y~~ll~~~lPiES~l~~~l~d~lnaEI~~g~i~~~~d~~~wL~~T~ly~r~~~nP~~y~~~~~~~~~~~~l~~~~~ 969 (1300)
. |...++....| ||..-++.|+- |. ++. .|+ +++..-+.+..+..
T Consensus 698 a--y~~eml~stvP---------------EIqRTNl~nvV----------Ll---Lks---lgV--~dll~FdFmD~Ppe 742 (1042)
T KOG0924|consen 698 A--YKNEMLPSTVP---------------EIQRTNLSNVV----------LL---LKS---LGV--DDLLKFDFMDPPPE 742 (1042)
T ss_pred H--HHhhcccCCCc---------------hhhhcchhhHH----------HH---HHh---cCh--hhhhCCCcCCCCHH
Confidence 3 33345555444 34333333221 10 110 111 11122233445566
Q ss_pred HHHHHHHHHHHHCCCccccccCCceeeccccccccccccccccHHHHHhhcCCCCChHHHHHHhcCCcccccCcCCchHH
Q 000756 970 DLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEK 1049 (1300)
Q Consensus 970 ~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~ias~~yi~~~T~~~~~~~l~~~~~~~~il~ils~s~EF~~i~vR~~E~ 1049 (1300)
+.+.+++..|...|+|... -.+|++|+-|+.|+++|...+++.-+..-.|. .+|+.|+|+-+- ..+.+|+.|+
T Consensus 743 d~~~~sly~Lw~LGAl~~~-----g~LT~lG~~MvefpLDP~lsKmll~a~~~Gc~-dEilsIvSmLSv-p~VF~rpker 815 (1042)
T KOG0924|consen 743 DNLLNSLYQLWTLGALDNT-----GQLTPLGRKMVEFPLDPPLSKMLLMAARMGCS-DEILSIVSMLSV-PAVFYRPKER 815 (1042)
T ss_pred HHHHHHHHHHHHhhccccC-----CccchhhHHhhhCCCCchHHHHHHHHhccCcH-HHHHHHHHHhcc-cceeeccccc
Confidence 7899999999999999743 36899999999999999999999877666665 566666554322 4566777776
Q ss_pred HHHHHHH
Q 000756 1050 MELAKLL 1056 (1300)
Q Consensus 1050 ~eL~~L~ 1056 (1300)
.+-..+.
T Consensus 816 ~eead~a 822 (1042)
T KOG0924|consen 816 EEEADAA 822 (1042)
T ss_pred hhhhhhH
Confidence 6655544
No 75
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=3.8e-33 Score=336.96 Aligned_cols=305 Identities=38% Similarity=0.580 Sum_probs=277.4
Q ss_pred CCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhh
Q 000756 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (1300)
Q Consensus 493 ~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~ 572 (1300)
++.+||+|.+.|...++.+.|+++.+|||+|||++|++++.+.+..+. +.|++||+|.++|+.+..++|++
T Consensus 925 ~~~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p---------~~kvvyIap~kalvker~~Dw~~ 995 (1230)
T KOG0952|consen 925 YKYFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYP---------GSKVVYIAPDKALVKERSDDWSK 995 (1230)
T ss_pred hcccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCC---------CccEEEEcCCchhhcccccchhh
Confidence 458999999999999999999999999999999999999999987752 46899999999999999999999
Q ss_pred hcccCCcEEEEEeCCCccchhhhccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccCChhHHHHHHHHHHH
Q 000756 573 RLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVR 652 (1300)
Q Consensus 573 ~l~~~gi~V~~ltGd~~~~~~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~ 652 (1300)
++...|+++.+++|+...+.....+++++|+||++|+-+.|.|..+.++++++++|+||+|+++++|||++|.+++|+-+
T Consensus 996 r~~~~g~k~ie~tgd~~pd~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~rgPVle~ivsr~n~ 1075 (1230)
T KOG0952|consen 996 RDELPGIKVIELTGDVTPDVKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGEDRGPVLEVIVSRMNY 1075 (1230)
T ss_pred hcccCCceeEeccCccCCChhheecCceEEcccccccCccccccchhhhccccceeecccccccCCCcceEEEEeecccc
Confidence 99877999999999999888888899999999999999999999999999999999999999999999999999999877
Q ss_pred HHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCcccccceeeEeeeecCchhHHHHHHHHHHHHHHHHHhC
Q 000756 653 QIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAG 732 (1300)
Q Consensus 653 ~~~~~~~~~riV~LSATlpn~~dva~~L~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 732 (1300)
...++...+|++++|.-+.|..|+++||+..+. ++|.++.||+|++.++.+++......++..||++.++.+....+
T Consensus 1076 ~s~~t~~~vr~~glsta~~na~dla~wl~~~~~---~nf~~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp 1152 (1230)
T KOG0952|consen 1076 ISSQTEEPVRYLGLSTALANANDLADWLNIKDM---YNFRPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSP 1152 (1230)
T ss_pred CccccCcchhhhhHhhhhhccHHHHHHhCCCCc---CCCCcccccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCC
Confidence 666778899999999999999999999998753 89999999999999999999988888999999999999999988
Q ss_pred CCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHHH
Q 000756 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLV 812 (1300)
Q Consensus 733 ~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~v 812 (1300)
..|+|||+.+|+.+..+|..|.......+....|+..+.. .+.-....+.|..|+..+++|++.||+|+...||..+
T Consensus 1153 ~~p~lifv~srrqtrlta~~li~~~~~~~~p~~fl~~de~---e~e~~~~~~~d~~Lk~tl~Fgi~lhhagl~~~dr~~~ 1229 (1230)
T KOG0952|consen 1153 IKPVLIFVSSRRQTRLTALDLIASCATEDNPKQFLNMDEL---ELEIIMSKVRDTNLKLTLPFGIGLHHAGLIENDRKIV 1229 (1230)
T ss_pred CCceEEEeecccccccchHhHHhhccCCCCchhccCCCHH---HHHHHHHHhcccchhhhhhhhhhhhhhhccccccccC
Confidence 9999999999999999999998887777777778876532 3344556788999999999999999999999988654
No 76
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2e-30 Score=287.18 Aligned_cols=334 Identities=21% Similarity=0.361 Sum_probs=252.2
Q ss_pred hhhHhhc-CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHH
Q 000756 484 EWAQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (1300)
Q Consensus 484 ~~~~~~f-~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaL 562 (1300)
+.++..| .||..|+.||++|+..+..+ .|+++.|++|+|||.+|.+++++.+... .....+++++|+++|
T Consensus 36 ~LLrgiy~yGFekPSaIQqraI~p~i~G-~dv~~qaqsgTgKt~af~i~iLq~iD~~--------~ke~qalilaPtreL 106 (397)
T KOG0327|consen 36 SLLRGIYAYGFEKPSAIQQRAILPCIKG-HDVIAQAQSGTGKTAAFLISILQQIDMS--------VKETQALILAPTREL 106 (397)
T ss_pred HHHhHHHhhccCCchHHHhccccccccC-CceeEeeeccccchhhhHHHHHhhcCcc--------hHHHHHHHhcchHHH
Confidence 3445556 69999999999999999887 5699999999999999999999987432 234568999999999
Q ss_pred HHHHHHHHhhhcccCCcEEEEEeCCCccchh--hh--ccceEEEECcchH-HHHHhhcCCCcccccccEEEEeccccccc
Q 000756 563 VAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ--QI--EETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD 637 (1300)
Q Consensus 563 a~q~~~~~~~~l~~~gi~V~~ltGd~~~~~~--~~--~~~~IIV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH~l~d 637 (1300)
|+|+...+...+...+.+|..++|+.....+ .+ ..++|+|+||++. +++.+.. .....++++|+||++.+..
T Consensus 107 a~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~---l~~~~iKmfvlDEaDEmLs 183 (397)
T KOG0327|consen 107 AQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGS---LSTDGIKMFVLDEADEMLS 183 (397)
T ss_pred HHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhcccc---ccccceeEEeecchHhhhc
Confidence 9999988888777888999999987765532 22 3579999999995 6665552 3566799999999999876
Q ss_pred -CChhHHHHHHHHHHHHHhhccCCeeEEEEcccCCC-hHHHHHHHhccccCceEEecCCcccccceeeEeeeecCchhHH
Q 000756 638 -NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQR 715 (1300)
Q Consensus 638 -~rg~~le~iv~rl~~~~~~~~~~~riV~LSATlpn-~~dva~~L~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~ 715 (1300)
++...+..+... .++++|++.+|||+|. ...+.+-+..+|..-....+ ...--.+.|.|+.+.... +
T Consensus 184 ~gfkdqI~~if~~-------lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~-~ltl~gikq~~i~v~k~~---k 252 (397)
T KOG0327|consen 184 RGFKDQIYDIFQE-------LPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKD-ELTLEGIKQFYINVEKEE---K 252 (397)
T ss_pred cchHHHHHHHHHH-------cCcchhheeecccCcHHHHHHHHHhccCceEEEecch-hhhhhheeeeeeeccccc---c
Confidence 566666666554 4788999999999986 33444333333211111111 111122334444433332 2
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcC
Q 000756 716 FQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPY 795 (1300)
Q Consensus 716 ~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~ 795 (1300)
+..+.. +|+ .-.+.+||||+++.+..+...|...+ .
T Consensus 253 ~~~l~d-l~~------~~~q~~if~nt~r~v~~l~~~L~~~~-------------------------------------~ 288 (397)
T KOG0327|consen 253 LDTLCD-LYR------RVTQAVIFCNTRRKVDNLTDKLRAHG-------------------------------------F 288 (397)
T ss_pred ccHHHH-HHH------hhhcceEEecchhhHHHHHHHHhhCC-------------------------------------c
Confidence 222222 122 35689999999999999888885443 3
Q ss_pred CeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCCC
Q 000756 796 GFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQ 875 (1300)
Q Consensus 796 gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g 875 (1300)
.+...|+.|.+.+|..+.+.|+.|..+|||.|+.+|+|+|+-.+..||+ |+.|. ....|+||+||+||.|
T Consensus 289 ~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvin----ydlP~------~~~~yihR~gr~gr~g 358 (397)
T KOG0327|consen 289 TVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVN----YDLPA------RKENYIHRIGRAGRFG 358 (397)
T ss_pred eEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeee----ecccc------chhhhhhhcccccccC
Confidence 3567899999999999999999999999999999999999999999998 88776 5789999999999966
Q ss_pred CCCceEEEEEeCCCcHHHHHH
Q 000756 876 YDSYGEGIIITGHSELRYYLS 896 (1300)
Q Consensus 876 ~d~~G~~iil~~~~~~~~y~~ 896 (1300)
.+|.++.+++..+......
T Consensus 359 --rkg~~in~v~~~d~~~lk~ 377 (397)
T KOG0327|consen 359 --RKGVAINFVTEEDVRDLKD 377 (397)
T ss_pred --CCceeeeeehHhhHHHHHh
Confidence 9999999999877665544
No 77
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.97 E-value=3e-29 Score=308.41 Aligned_cols=310 Identities=15% Similarity=0.177 Sum_probs=203.8
Q ss_pred CCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhh
Q 000756 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (1300)
Q Consensus 494 ~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~ 573 (1300)
..|+++|.++++.++.+ ++.+++||||+|||.++...+...+... ..++||++||++|+.|+.++|++.
T Consensus 113 ~~~r~~Q~~av~~~l~~-~~~il~apTGsGKT~i~~~l~~~~~~~~----------~~~vLilvpt~eL~~Q~~~~l~~~ 181 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKN-NRRLLNLPTSAGKSLIQYLLSRYYLENY----------EGKVLIIVPTTSLVTQMIDDFVDY 181 (501)
T ss_pred CCCCHHHHHHHHHHHhc-CceEEEeCCCCCHHHHHHHHHHHHHhcC----------CCeEEEEECcHHHHHHHHHHHHHh
Confidence 58999999999998876 4589999999999998765433223221 237999999999999999999886
Q ss_pred cccCCcEEEEEeCCCccchhhhccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccCChhHHHHHHHHHHHH
Q 000756 574 LQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQ 653 (1300)
Q Consensus 574 l~~~gi~V~~ltGd~~~~~~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~ 653 (1300)
+......+..+.|+.... ...+|+|+||+++. +... .+++.+++||+||||++.. ..++.++..+
T Consensus 182 ~~~~~~~~~~i~~g~~~~----~~~~I~VaT~qsl~---~~~~--~~~~~~~~iIvDEaH~~~~---~~~~~il~~~--- 246 (501)
T PHA02558 182 RLFPREAMHKIYSGTAKD----TDAPIVVSTWQSAV---KQPK--EWFDQFGMVIVDECHLFTG---KSLTSIITKL--- 246 (501)
T ss_pred ccccccceeEEecCcccC----CCCCEEEeeHHHHh---hchh--hhccccCEEEEEchhcccc---hhHHHHHHhh---
Confidence 543333454455544322 35789999999752 2221 3567899999999999863 3455544432
Q ss_pred HhhccCCeeEEEEcccCCChHH----HHHHHhccccCceEEecCC-----cccccceeeEeee--ecC--------chhH
Q 000756 654 IETTKEHIRLVGLSATLPNYED----VALFLRVNLEKGLFYFDNS-----YRPVPLSQQYIGI--QVK--------KPLQ 714 (1300)
Q Consensus 654 ~~~~~~~~riV~LSATlpn~~d----va~~L~~~~~~~~~~f~~~-----~rpv~l~~~~~~~--~~~--------~~~~ 714 (1300)
+...+++|||||+++... +..+++.- .+..... ...+++....+.+ +.. ....
T Consensus 247 ----~~~~~~lGLTATp~~~~~~~~~~~~~fG~i----~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 318 (501)
T PHA02558 247 ----DNCKFKFGLTGSLRDGKANILQYVGLFGDI----FKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQE 318 (501)
T ss_pred ----hccceEEEEeccCCCccccHHHHHHhhCCc----eEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHH
Confidence 335678999999764221 11222210 0000000 0001111111100 000 0000
Q ss_pred HHH------HHHHHHHHHHHHHh-CCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccch
Q 000756 715 RFQ------LMNDLCYEKVVAVA-GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSN 787 (1300)
Q Consensus 715 ~~~------~~~~~~~~~i~~~~-~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~ 787 (1300)
.+. .-+..+...+.... .+.+++|||.+.+.++.++..|...+
T Consensus 319 ~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g------------------------------ 368 (501)
T PHA02558 319 EIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVY------------------------------ 368 (501)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcC------------------------------
Confidence 000 01122222222222 35789999999999988888887643
Q ss_pred hhhhhhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEec-cccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHH
Q 000756 788 DLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVST-ATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQ 866 (1300)
Q Consensus 788 ~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT-~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQ 866 (1300)
..+.++||+|+..+|..+++.|++|...||||| +++++|+|+|.+++||. +.|.+ |...|+|
T Consensus 369 -------~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl----~~p~~------s~~~~~Q 431 (501)
T PHA02558 369 -------DKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIF----AHPSK------SKIIVLQ 431 (501)
T ss_pred -------CCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEE----ecCCc------chhhhhh
Confidence 236788999999999999999999999999999 89999999999999996 67765 7889999
Q ss_pred hhhccCCCCCCCceEEEEE
Q 000756 867 MLGRAGRPQYDSYGEGIII 885 (1300)
Q Consensus 867 r~GRAGR~g~d~~G~~iil 885 (1300)
|+||++|++. ....++++
T Consensus 432 riGR~~R~~~-~K~~~~i~ 449 (501)
T PHA02558 432 SIGRVLRKHG-SKSIATVW 449 (501)
T ss_pred hhhccccCCC-CCceEEEE
Confidence 9999999873 33345554
No 78
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.9e-30 Score=287.48 Aligned_cols=337 Identities=19% Similarity=0.275 Sum_probs=257.8
Q ss_pred hHhhc-CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHH
Q 000756 486 AQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564 (1300)
Q Consensus 486 ~~~~f-~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~ 564 (1300)
++... .||+.|+|||++.+|.++.+.+ ++-.|-||||||.+|++|+++.+..+. ..+.+++++.|+++|+.
T Consensus 33 ~raI~kkg~~~ptpiqRKTipliLe~~d-vv~martgsgktaaf~ipm~e~Lk~~s-------~~g~RalilsptreLa~ 104 (529)
T KOG0337|consen 33 LRAIHKKGFNTPTPIQRKTIPLILEGRD-VVGMARTGSGKTAAFLIPMIEKLKSHS-------QTGLRALILSPTRELAL 104 (529)
T ss_pred HHHHHHhhcCCCCchhcccccceeeccc-cceeeecCCcchhhHHHHHHHHHhhcc-------ccccceeeccCcHHHHH
Confidence 34444 7999999999999999998855 899999999999999999999998874 23679999999999999
Q ss_pred HHHHHHhhhcccCCcEEEEEeCCCccchhhh---ccceEEEECcchHHHHHhhcCCCcccccccEEEEeccccccc-CCh
Q 000756 565 EVVGNLSNRLQMYDVKVRELSGDQTLTRQQI---EETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRG 640 (1300)
Q Consensus 565 q~~~~~~~~l~~~gi~V~~ltGd~~~~~~~~---~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg 640 (1300)
|..+.++...+..++++..++|+.+..++.. .+++||++||+++..+.-... .-++.|.+||+||++.|.. ++.
T Consensus 105 qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~--l~l~sveyVVfdEadrlfemgfq 182 (529)
T KOG0337|consen 105 QTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMT--LTLSSVEYVVFDEADRLFEMGFQ 182 (529)
T ss_pred HHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehhee--ccccceeeeeehhhhHHHhhhhH
Confidence 9999998877777889998888877776643 478999999998754444433 4578899999999999987 488
Q ss_pred hHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEE-ecCCccc-ccceeeEeeeecCchhHHHHH
Q 000756 641 PVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFY-FDNSYRP-VPLSQQYIGIQVKKPLQRFQL 718 (1300)
Q Consensus 641 ~~le~iv~rl~~~~~~~~~~~riV~LSATlpn~~dva~~L~~~~~~~~~~-f~~~~rp-v~l~~~~~~~~~~~~~~~~~~ 718 (1300)
+.+..+++|+ +...|.+.||||+|+ ++..|-+.....++.. .+...+- -.++..+..+... .+..+
T Consensus 183 eql~e~l~rl-------~~~~QTllfSatlp~--~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a---~K~aa 250 (529)
T KOG0337|consen 183 EQLHEILSRL-------PESRQTLLFSATLPR--DLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKA---EKEAA 250 (529)
T ss_pred HHHHHHHHhC-------CCcceEEEEeccCch--hhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccH---HHHHH
Confidence 8888888876 556699999999995 6777776543222211 1111111 1122222222211 11112
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeE
Q 000756 719 MNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFA 798 (1300)
Q Consensus 719 ~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~ 798 (1300)
+. ..+.......+++|||+++..++.+...|+..+ +++.
T Consensus 251 Ll----~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g-------------------------------------~~~s 289 (529)
T KOG0337|consen 251 LL----SILGGRIKDKQTIVFVATKHHVEYVRGLLRDFG-------------------------------------GEGS 289 (529)
T ss_pred HH----HHHhccccccceeEEecccchHHHHHHHHHhcC-------------------------------------CCcc
Confidence 11 122233335689999999999998888777654 3455
Q ss_pred EecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCCCCCC
Q 000756 799 IHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDS 878 (1300)
Q Consensus 799 ~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d~ 878 (1300)
.+++.|++.-|..-...|..++..+||.|+++++|+|+|-...||+ ||.+. ...-|+||+||+.|.| .
T Consensus 290 ~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvin----yd~p~------~~klFvhRVgr~arag--r 357 (529)
T KOG0337|consen 290 DIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVIN----YDFPP------DDKLFVHRVGRVARAG--R 357 (529)
T ss_pred ccccccChHhhhhccccccCCccceEEEehhhhccCCCcccccccc----ccCCC------CCceEEEEecchhhcc--c
Confidence 6699999999999999999999999999999999999999999999 66443 3445999999999988 8
Q ss_pred ceEEEEEeCCCcHHHHHHh
Q 000756 879 YGEGIIITGHSELRYYLSL 897 (1300)
Q Consensus 879 ~G~~iil~~~~~~~~y~~l 897 (1300)
.|.+|-++.+.+..|...+
T Consensus 358 tg~aYs~V~~~~~~yl~DL 376 (529)
T KOG0337|consen 358 TGRAYSLVASTDDPYLLDL 376 (529)
T ss_pred cceEEEEEecccchhhhhh
Confidence 9999999999888776653
No 79
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.97 E-value=3.9e-29 Score=298.76 Aligned_cols=366 Identities=26% Similarity=0.385 Sum_probs=238.4
Q ss_pred CCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhc
Q 000756 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1300)
Q Consensus 495 ~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l 574 (1300)
.|+.+|.+.+... ..++.++|+|||.+|||.+...+|-..+... +...+||++|+++|+.|...++..++
T Consensus 511 ~Pd~WQ~elLDsv-Dr~eSavIVAPTSaGKTfisfY~iEKVLRes---------D~~VVIyvaPtKaLVnQvsa~VyaRF 580 (1330)
T KOG0949|consen 511 CPDEWQRELLDSV-DRNESAVIVAPTSAGKTFISFYAIEKVLRES---------DSDVVIYVAPTKALVNQVSANVYARF 580 (1330)
T ss_pred CCcHHHHHHhhhh-hcccceEEEeeccCCceeccHHHHHHHHhhc---------CCCEEEEecchHHHhhhhhHHHHHhh
Confidence 5788999999864 5667899999999999999999998888764 23479999999999999999998888
Q ss_pred cc-CCcEEEEEeCCCccchhh-hccceEEEECcchHHHHHhh-cCCCcccccccEEEEeccccccc-CChhHHHHHHHHH
Q 000756 575 QM-YDVKVRELSGDQTLTRQQ-IEETQIIVTTPEKWDIITRK-SGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVART 650 (1300)
Q Consensus 575 ~~-~gi~V~~ltGd~~~~~~~-~~~~~IIV~TPekld~l~r~-~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~iv~rl 650 (1300)
.. .-.+-..+.|+...+.+. --+|+|+||-||.++.++-. .....+...++++|+||+|+++. +.|-.+|.++--
T Consensus 581 ~~~t~~rg~sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~l- 659 (1330)
T KOG0949|consen 581 DTKTFLRGVSLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLL- 659 (1330)
T ss_pred ccCccccchhhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHh-
Confidence 42 212222333443322221 13799999999999766544 22346888999999999999997 466666665542
Q ss_pred HHHHhhccCCeeEEEEcccCCChHHHHHHHhcc-----ccCceEEecCC---------------------------cccc
Q 000756 651 VRQIETTKEHIRLVGLSATLPNYEDVALFLRVN-----LEKGLFYFDNS---------------------------YRPV 698 (1300)
Q Consensus 651 ~~~~~~~~~~~riV~LSATlpn~~dva~~L~~~-----~~~~~~~f~~~---------------------------~rpv 698 (1300)
.++.+++||||+.|+..+..|+... ....+..+... .|.+
T Consensus 660 --------i~CP~L~LSATigN~~l~qkWlnq~~R~~sr~~eli~~~erySel~l~v~n~~~e~n~~yl~~~falgerai 731 (1330)
T KOG0949|consen 660 --------IPCPFLVLSATIGNPNLFQKWLNQRGRAMSRNAELIDYGERYSELGLVVYNRMNEGNAYYLLKLFALGERAI 731 (1330)
T ss_pred --------cCCCeeEEecccCCHHHHHHHHHHHHhhcCCCeeeeehhhhhhhhcceeeccCCCCcchHHHHHHhhchhhc
Confidence 3678999999999999999999721 00001111110 1100
Q ss_pred cce----------eeEeeeecC----------------------------chhHH--------HHHHH---------HH-
Q 000756 699 PLS----------QQYIGIQVK----------------------------KPLQR--------FQLMN---------DL- 722 (1300)
Q Consensus 699 ~l~----------~~~~~~~~~----------------------------~~~~~--------~~~~~---------~~- 722 (1300)
... ..+..+... ..... .+.+. +.
T Consensus 732 ~~~~~~~~~s~dd~~~lafe~~~~l~~~k~~kl~~k~~p~~~fe~~~~~~k~~~e~~r~~~~l~~~f~e~s~~q~kik~~ 811 (1330)
T KOG0949|consen 732 IVSLRELSESEDDNVVLAFEPLSCLTLRKLNKLLIKITPENFFESNIVTKKEVGEYGRHLLELFQGFIEDSLTQKQIKYV 811 (1330)
T ss_pred cchhhccccCCCCceEeeccchhHHHHHHHHHHHhhcCHHHhhhhhhheechHHHHHHHHHHHHHHhhhcChHHHHHHHH
Confidence 000 000000000 00000 00000 00
Q ss_pred --------------------------HHHHHHHHhC--CCeEEEEEcChHHHHHHHHHHHHHhhcccc---ccc------
Q 000756 723 --------------------------CYEKVVAVAG--KHQVLIFVHSRKETAKTARAIRDTALENDT---LGR------ 765 (1300)
Q Consensus 723 --------------------------~~~~i~~~~~--~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~---l~~------ 765 (1300)
+...+..... .-|+|+|-..|..|+++|..+.......+. -..
T Consensus 812 ~ki~~k~Vnkqle~~~~ys~e~i~~nil~ll~dLkEK~~lpaicfn~dr~fcekla~kv~~~Le~~e~Ee~k~k~m~k~k 891 (1330)
T KOG0949|consen 812 YKLQTKEVNKQLESVVDYSSEYILENILDLLMDLKEKNMLPAICFNTDRDFCEKLALKVHRQLESMEMEEKKDKLMEKMK 891 (1330)
T ss_pred HHhhhhhhhhHhhhcccCcHHHHHHHHHHHHHHHHhccccchhcccchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 0011111111 458999999999988877655432111000 000
Q ss_pred ---------------cccc------------------------Cch-hHHHHHhhhhc--ccchhhhhhhcCCeEEecCC
Q 000756 766 ---------------FLKE------------------------DSV-SREILQSHTDM--VKSNDLKDLLPYGFAIHHAG 803 (1300)
Q Consensus 766 ---------------~l~~------------------------~~~-~~~~l~~~~~~--~~~~~L~~ll~~gv~~~Hag 803 (1300)
+.+. ... ....+..+... -.+..+.+++-.|||+||+|
T Consensus 892 k~~~~a~~r~Kt~e~~~k~~~~~ek~~~~k~d~~~~~~~f~dp~~~~~~~~f~~~~~~~g~~~~~~id~lyRGiG~HHag 971 (1330)
T KOG0949|consen 892 KEAKRARDREKTKESWIKESIAAEKSFQMKNDKKNIKYTFLDPLTKLTDYEFEEETKFIGNTDFEFIDMLYRGIGVHHAG 971 (1330)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccceEEecCcccccchhhhhhhccccCCCcHHHHHHHHhcccccccc
Confidence 0000 000 00000000011 12356778888999999999
Q ss_pred CCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCCCCCCceEEE
Q 000756 804 MTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883 (1300)
Q Consensus 804 l~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d~~G~~i 883 (1300)
|++..|..||-+|+.|++.||+||.||+-|||.|+.+||+-|+. -.+++..|.||+|||||.|||..|.++
T Consensus 972 lNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDs---------LQL~plny~QmaGRAGRRGFD~lGnV~ 1042 (1330)
T KOG0949|consen 972 LNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGDS---------LQLDPLNYKQMAGRAGRRGFDTLGNVV 1042 (1330)
T ss_pred cchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEeccc---------cccCchhHHhhhccccccccccccceE
Confidence 99999999999999999999999999999999999999997532 345788999999999999999999998
Q ss_pred EEeCC
Q 000756 884 IITGH 888 (1300)
Q Consensus 884 il~~~ 888 (1300)
.+--+
T Consensus 1043 FmgiP 1047 (1330)
T KOG0949|consen 1043 FMGIP 1047 (1330)
T ss_pred EEeCc
Confidence 87654
No 80
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.96 E-value=7.1e-28 Score=290.75 Aligned_cols=341 Identities=22% Similarity=0.328 Sum_probs=221.0
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHH
Q 000756 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1300)
Q Consensus 491 ~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~ 570 (1300)
++.-.|+.+|.+....|+ ++|+|||+|||+|||++|...+++++... +++|||++||++-|+.|+...+
T Consensus 58 p~~~~lR~YQ~eivq~AL--gkNtii~lPTG~GKTfIAa~Vm~nh~rw~---------p~~KiVF~aP~~pLv~QQ~a~~ 126 (746)
T KOG0354|consen 58 PTNLELRNYQEELVQPAL--GKNTIIALPTGSGKTFIAAVIMKNHFEWR---------PKGKVVFLAPTRPLVNQQIACF 126 (746)
T ss_pred cCcccccHHHHHHhHHhh--cCCeEEEeecCCCccchHHHHHHHHHhcC---------CcceEEEeeCCchHHHHHHHHH
Confidence 445588999999999999 57999999999999999999999999875 2469999999999999999777
Q ss_pred hhhcccCCcEEEEEeCCCc-cch--hhhccceEEEECcchH-HHHHhhcCCCcccccccEEEEecccccccCChhHHHHH
Q 000756 571 SNRLQMYDVKVRELSGDQT-LTR--QQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESI 646 (1300)
Q Consensus 571 ~~~l~~~gi~V~~ltGd~~-~~~--~~~~~~~IIV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~i 646 (1300)
+..+.+ -.+....||.. ... ......+|+|+||.-+ +.|.....+ -++.+.++||||||.-.. ...+..+
T Consensus 127 ~~~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~--~ls~fs~iv~DE~Hra~k--n~~Y~~V 200 (746)
T KOG0354|consen 127 SIYLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHD--ELSDFSLIVFDECHRTSK--NHPYNNI 200 (746)
T ss_pred hhccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhccccccc--ccceEEEEEEcccccccc--cccHHHH
Confidence 766544 34444445432 222 2346789999999976 333333332 278899999999998653 2344455
Q ss_pred HHHHHHHHhhccCCeeEEEEcccCCC-hHHHHHHHh---ccccC----ce---EEe--cCCcccccceee----------
Q 000756 647 VARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLR---VNLEK----GL---FYF--DNSYRPVPLSQQ---------- 703 (1300)
Q Consensus 647 v~rl~~~~~~~~~~~riV~LSATlpn-~~dva~~L~---~~~~~----~~---~~f--~~~~rpv~l~~~---------- 703 (1300)
+...+.. .....||+|||||+++ .+.+...+. +.... .+ +.. .-..-|+++...
T Consensus 201 mr~~l~~---k~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~ 277 (746)
T KOG0354|consen 201 MREYLDL---KNQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGM 277 (746)
T ss_pred HHHHHHh---hhccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHH
Confidence 4443322 2234499999999875 223333321 11000 00 000 000011111000
Q ss_pred ----------------------E-------------eeeecCch------------------------------------
Q 000756 704 ----------------------Y-------------IGIQVKKP------------------------------------ 712 (1300)
Q Consensus 704 ----------------------~-------------~~~~~~~~------------------------------------ 712 (1300)
. .+......
T Consensus 278 ~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e 357 (746)
T KOG0354|consen 278 IIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEE 357 (746)
T ss_pred HHHHHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccc
Confidence 0 00000000
Q ss_pred --hHH--------------HHHHHHH----------------HHHHHHHH---hCCCeEEEEEcChHHHHHHHHHHHHHh
Q 000756 713 --LQR--------------FQLMNDL----------------CYEKVVAV---AGKHQVLIFVHSRKETAKTARAIRDTA 757 (1300)
Q Consensus 713 --~~~--------------~~~~~~~----------------~~~~i~~~---~~~~~vLVFv~sr~~~~~~a~~L~~~~ 757 (1300)
.++ ...|++. +.+.+.+. .+..++||||.+|..|..+.++|....
T Consensus 358 ~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~ 437 (746)
T KOG0354|consen 358 VALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLH 437 (746)
T ss_pred cchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhh
Confidence 000 0000000 00011111 225689999999999999999887521
Q ss_pred hcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCC
Q 000756 758 LENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLP 837 (1300)
Q Consensus 758 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlP 837 (1300)
...-... .+++.|-+.-..||++.++..+++.|++|.++|||||++++.|+|+|
T Consensus 438 ~~~ir~~--------------------------~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ 491 (746)
T KOG0354|consen 438 ELGIKAE--------------------------IFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIG 491 (746)
T ss_pred hcccccc--------------------------eeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcc
Confidence 1100111 12222333334799999999999999999999999999999999999
Q ss_pred CcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCCCCCCceEEEEEeCCCcH
Q 000756 838 AHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL 891 (1300)
Q Consensus 838 av~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d~~G~~iil~~~~~~ 891 (1300)
.+++||. ||... ++...+||.|| ||. +.|+++++++..+.
T Consensus 492 ec~lVIc----Yd~~s------npIrmIQrrGR-gRa---~ns~~vll~t~~~~ 531 (746)
T KOG0354|consen 492 ECNLVIC----YDYSS------NPIRMVQRRGR-GRA---RNSKCVLLTTGSEV 531 (746)
T ss_pred cccEEEE----ecCCc------cHHHHHHHhcc-ccc---cCCeEEEEEcchhH
Confidence 9999998 88776 78999999999 997 68999999985443
No 81
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=6.5e-28 Score=283.01 Aligned_cols=451 Identities=17% Similarity=0.180 Sum_probs=291.4
Q ss_pred HHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcccCCcEEEEEeC
Q 000756 507 ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSG 586 (1300)
Q Consensus 507 ~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~~gi~V~~ltG 586 (1300)
+++.+..++|||.||||||+.....+..+-..... ..++.-|-+..|+|-.|..++.++..-++.+|-.|+....
T Consensus 267 aIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~-----~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIR 341 (1172)
T KOG0926|consen 267 AINENPVVIICGETGSGKTTQVPQFLYEAGFASEQ-----SSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIR 341 (1172)
T ss_pred HhhcCCeEEEecCCCCCccccchHHHHHcccCCcc-----CCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEE
Confidence 45667889999999999999887776654322211 0124468889999999999999998877766666665432
Q ss_pred CCccchhhhccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccC------C
Q 000756 587 DQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKE------H 660 (1300)
Q Consensus 587 d~~~~~~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~------~ 660 (1300)
.+......+.|.++|.+ +|+|.......+..++.|||||||.-. -....+-.+++|+.+....... +
T Consensus 342 ---fd~ti~e~T~IkFMTDG---VLLrEi~~DflL~kYSvIIlDEAHERS-vnTDILiGmLSRiV~LR~k~~ke~~~~kp 414 (1172)
T KOG0926|consen 342 ---FDGTIGEDTSIKFMTDG---VLLREIENDFLLTKYSVIILDEAHERS-VNTDILIGMLSRIVPLRQKYYKEQCQIKP 414 (1172)
T ss_pred ---eccccCCCceeEEecch---HHHHHHHHhHhhhhceeEEechhhhcc-chHHHHHHHHHHHHHHHHHHhhhhcccCc
Confidence 11112246899999999 788887666788999999999999843 2234555667777666555544 8
Q ss_pred eeEEEEcccCCChHHHHH---HHhccccCceEEecCCcccccceeeEeeeecCchhHHHHHHHHHHHHHHHHHhCCCeEE
Q 000756 661 IRLVGLSATLPNYEDVAL---FLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVL 737 (1300)
Q Consensus 661 ~riV~LSATlpn~~dva~---~L~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vL 737 (1300)
.++|.|||||- ..|+.+ .+-..| .+..+ ..|..|+..||..-+...+.. .+..+.| +|++..+.+.+|
T Consensus 415 LKLIIMSATLR-VsDFtenk~LFpi~p--PlikV--dARQfPVsIHF~krT~~DYi~--eAfrKtc--~IH~kLP~G~IL 485 (1172)
T KOG0926|consen 415 LKLIIMSATLR-VSDFTENKRLFPIPP--PLIKV--DARQFPVSIHFNKRTPDDYIA--EAFRKTC--KIHKKLPPGGIL 485 (1172)
T ss_pred eeEEEEeeeEE-ecccccCceecCCCC--ceeee--ecccCceEEEeccCCCchHHH--HHHHHHH--HHhhcCCCCcEE
Confidence 99999999983 233321 111111 12222 334555555555433332211 1222222 245566688999
Q ss_pred EEEcChHHHHHHHHHHHHHhhccc------ccccccccC--------------chhHHHHH------------h------
Q 000756 738 IFVHSRKETAKTARAIRDTALEND------TLGRFLKED--------------SVSREILQ------------S------ 779 (1300)
Q Consensus 738 VFv~sr~~~~~~a~~L~~~~~~~~------~l~~~l~~~--------------~~~~~~l~------------~------ 779 (1300)
|||....++..++..|+......- ......++. ....+.+. .
T Consensus 486 VFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~r 565 (1172)
T KOG0926|consen 486 VFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLR 565 (1172)
T ss_pred EEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhh
Confidence 999999999999999998743110 000000000 00000000 0
Q ss_pred -hhhcc---------------cchhhh--------hhhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccC
Q 000756 780 -HTDMV---------------KSNDLK--------DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVN 835 (1300)
Q Consensus 780 -~~~~~---------------~~~~L~--------~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVd 835 (1300)
..... ....+. ..-+.-|..+++=|+.+.+.+|++.-..|..-++|||++++.++.
T Consensus 566 aa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLT 645 (1172)
T KOG0926|consen 566 AAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLT 645 (1172)
T ss_pred hhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccc
Confidence 00000 000011 111233678899999999999999999999999999999999999
Q ss_pred CCCcEEEEec----ceeccCCCCC----cccCCHHHHHHhhhccCCCCCCCceEEEEEeCCCcHHHHHHhhcCCCCcccc
Q 000756 836 LPAHTVIIKG----TQIYNPEKGA----WTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQ 907 (1300)
Q Consensus 836 lPav~vVI~~----t~~yd~~~g~----~~~~S~~d~lQr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~lPiES~ 907 (1300)
||++.+||++ +..||..+|- ..|+|.++.-||+|||||.| .|+||.+++..-.+
T Consensus 646 IPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg---pGHcYRLYSSAVf~--------------- 707 (1172)
T KOG0926|consen 646 IPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG---PGHCYRLYSSAVFS--------------- 707 (1172)
T ss_pred cCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC---CCceeehhhhHHhh---------------
Confidence 9999999997 4678887772 36889999999999999987 89999998753221
Q ss_pred hhHhHHHHHHHHHHhccccCHHHHHHHHHhhHHHHHHhcCCcccCCCccccccchhhhhHHHHHHHHHHHHHHHCCCccc
Q 000756 908 FVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKY 987 (1300)
Q Consensus 908 l~~~l~d~lnaEI~~g~i~~~~d~~~wL~~T~ly~r~~~nP~~y~~~~~~~~~~~~l~~~~~~li~~a~~~L~~~~~i~~ 987 (1300)
..+.++-..||....+.++ + |..+-+.-+..-+ -|....+-...++.|...|...|+++.
T Consensus 708 --~~Fe~fS~PEIlk~Pve~l---v-------LqMKsMnI~kVvn--------FPFPtpPd~~~L~~Aer~L~~LgALd~ 767 (1172)
T KOG0926|consen 708 --NDFEEFSLPEILKKPVESL---V-------LQMKSMNIDKVVN--------FPFPTPPDRSALEKAERRLKALGALDS 767 (1172)
T ss_pred --cchhhhccHHHhhCcHHHH---H-------HHHHhcCccceec--------CCCCCCccHHHHHHHHHHHHHhccccc
Confidence 1123333445554433322 1 1112222222222 233333334568899999999999986
Q ss_pred cccCCceeeccccccccccccccccHHHHHhhcC
Q 000756 988 DRKSGYFQVTDLGRIASYYYISHGTISTYNEHLK 1021 (1300)
Q Consensus 988 ~~~~~~~~~T~lG~ias~~yi~~~T~~~~~~~l~ 1021 (1300)
+ | .+|.||..||+|+++|.-.+++.-...
T Consensus 768 ~---g--~lT~lGk~mS~FPlsPrfsKmL~~~~Q 796 (1172)
T KOG0926|consen 768 N---G--GLTKLGKAMSLFPLSPRFSKMLATSDQ 796 (1172)
T ss_pred c---C--CcccccchhcccccChhHHHHHHHHHh
Confidence 4 2 589999999999999999888875443
No 82
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.96 E-value=1.2e-27 Score=296.28 Aligned_cols=422 Identities=17% Similarity=0.173 Sum_probs=285.8
Q ss_pred HHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcc-cCC
Q 000756 500 QSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYD 578 (1300)
Q Consensus 500 Q~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~-~~g 578 (1300)
+.+.+-.+++.+.+++|+|.||||||+.....||....... ...+|++..|+|--|..+++++..... ..|
T Consensus 177 ~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~--------~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g 248 (924)
T KOG0920|consen 177 MRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG--------AACNIICTQPRRISAISVAERVAKERGESLG 248 (924)
T ss_pred HHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC--------CCCeEEecCCchHHHHHHHHHHHHHhccccC
Confidence 34444456777899999999999999999999998876642 356799999999999999999876543 335
Q ss_pred cEEEEEeCCCccchhhhccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccCChhHHHHHHHHHHHHHhhcc
Q 000756 579 VKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTK 658 (1300)
Q Consensus 579 i~V~~ltGd~~~~~~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~ 658 (1300)
-.|+.-.+- ..+....+.+.+||.+ +++|.......+..+.+||+||+|+-+-. ...+-.++..+ -...
T Consensus 249 ~~VGYqvrl---~~~~s~~t~L~fcTtG---vLLr~L~~~~~l~~vthiivDEVHER~i~-~DflLi~lk~l----L~~~ 317 (924)
T KOG0920|consen 249 EEVGYQVRL---ESKRSRETRLLFCTTG---VLLRRLQSDPTLSGVTHIIVDEVHERSIN-TDFLLILLKDL----LPRN 317 (924)
T ss_pred CeeeEEEee---ecccCCceeEEEecHH---HHHHHhccCcccccCceeeeeeEEEccCC-cccHHHHHHHH----hhhC
Confidence 444443332 2222235899999999 77777766788999999999999985432 11233333333 3356
Q ss_pred CCeeEEEEcccCCChHHHHHHHhccccCceEEecCCcccccceeeEee-----------------eecCc----------
Q 000756 659 EHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIG-----------------IQVKK---------- 711 (1300)
Q Consensus 659 ~~~riV~LSATlpn~~dva~~L~~~~~~~~~~f~~~~rpv~l~~~~~~-----------------~~~~~---------- 711 (1300)
+..|+|+||||+ |.+.+..|++..+ +....+ |..|+..+|.. .....
T Consensus 318 p~LkvILMSAT~-dae~fs~YF~~~p---vi~i~g--rtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (924)
T KOG0920|consen 318 PDLKVILMSATL-DAELFSDYFGGCP---VITIPG--RTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLW 391 (924)
T ss_pred CCceEEEeeeec-chHHHHHHhCCCc---eEeecC--CCcchHHHHHHHHHHHhcccccccccccccccCccccccchhc
Confidence 899999999998 6789999998543 222222 22222222210 00000
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhh
Q 000756 712 PLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791 (1300)
Q Consensus 712 ~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ 791 (1300)
....-..+...+...+.+....+.+|||.|+..++..+...|.......+.
T Consensus 392 ~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~----------------------------- 442 (924)
T KOG0920|consen 392 EPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADS----------------------------- 442 (924)
T ss_pred cccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccc-----------------------------
Confidence 000000111112222223333689999999999999999888754432221
Q ss_pred hhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEec----ceeccCCCCC----cccCCHHH
Q 000756 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKG----TQIYNPEKGA----WTELSPLD 863 (1300)
Q Consensus 792 ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~----t~~yd~~~g~----~~~~S~~d 863 (1300)
..+-|...|+.|+..+++.|+.....|..+|++||++++.+|.||+|.+||+. -..||+..+. ..|+|...
T Consensus 443 -~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAn 521 (924)
T KOG0920|consen 443 -LKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKAN 521 (924)
T ss_pred -cceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccc
Confidence 11236778999999999999999999999999999999999999999999986 3568887663 37899999
Q ss_pred HHHhhhccCCCCCCCceEEEEEeCCCcHHHHHHhhc-CCCCcccchhHhHHHHHHHHHHhccc-cCHHHHHHHHHhhHHH
Q 000756 864 IMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMN-QQLPIESQFVSKLADQLNAEIVLGTV-QNAKEACNWIGYTYLY 941 (1300)
Q Consensus 864 ~lQr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~-~~lPiES~l~~~l~d~lnaEI~~g~i-~~~~d~~~wL~~T~ly 941 (1300)
..||.|||||. ..|.||.+++... |.++.. .++| +.+... ..|+++..- -...+...+|+
T Consensus 522 a~QR~GRAGRv---~~G~cy~L~~~~~---~~~~~~~~q~P------EilR~p-L~~l~L~iK~l~~~~~~~fLs----- 583 (924)
T KOG0920|consen 522 AKQRRGRAGRV---RPGICYHLYTRSR---YEKLMLAYQLP------EILRTP-LEELCLHIKVLEQGSIKAFLS----- 583 (924)
T ss_pred hHHhcccccCc---cCCeeEEeechhh---hhhcccccCCh------HHHhCh-HHHhhheeeeccCCCHHHHHH-----
Confidence 99999999998 4999999998644 444433 4444 222111 122222211 11111123331
Q ss_pred HHHhcCCcccCCCccccccchhhhhHHHHHHHHHHHHHHHCCCccccccCCceeeccccccccccccccccHHHHHhh
Q 000756 942 IRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEH 1019 (1300)
Q Consensus 942 ~r~~~nP~~y~~~~~~~~~~~~l~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~ias~~yi~~~T~~~~~~~ 1019 (1300)
++ +.++..+.|..|+..|...|+++.++ .+|+||+.+|.+++++.-.++....
T Consensus 584 -ka-------------------ldpP~~~~v~~a~~~L~~igaL~~~e-----~LT~LG~~la~lPvd~~igK~ll~g 636 (924)
T KOG0920|consen 584 -KA-------------------LDPPPADAVDLAIERLKQIGALDESE-----ELTPLGLHLASLPVDVRIGKLLLFG 636 (924)
T ss_pred -Hh-------------------cCCCChHHHHHHHHHHHHhccccCcc-----cchHHHHHHHhCCCccccchhheeh
Confidence 22 22333456899999999999998664 6999999999999999887766543
No 83
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.96 E-value=1.5e-27 Score=301.17 Aligned_cols=369 Identities=21% Similarity=0.196 Sum_probs=237.2
Q ss_pred CCCHHHHHHHHHHHcC--CCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhh
Q 000756 495 QLNRVQSRVYKSALSS--ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (1300)
Q Consensus 495 ~ln~iQ~~~i~~~l~~--~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~ 572 (1300)
.||+.|.++++.+..+ ..+++++||||||||.+|+.++...+.. +.+++|++|+++|+.|++++|++
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~-----------g~~vLvLvPt~~L~~Q~~~~l~~ 212 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ-----------GKQALVLVPEIALTPQMLARFRA 212 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc-----------CCeEEEEeCcHHHHHHHHHHHHH
Confidence 6899999999999874 5679999999999999999888777754 34799999999999999999988
Q ss_pred hcccCCcEEEEEeCCCccchhh-------hccceEEEECcchHHHHHhhcCCCcccccccEEEEeccccccc--CChhHH
Q 000756 573 RLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD--NRGPVL 643 (1300)
Q Consensus 573 ~l~~~gi~V~~ltGd~~~~~~~-------~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d--~rg~~l 643 (1300)
.+ |.++..++|+.+...+. ....+|+|+||..+ . ..+.++++|||||+|.... ..++.+
T Consensus 213 ~f---g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal---~------~p~~~l~liVvDEeh~~s~~~~~~p~y 280 (679)
T PRK05580 213 RF---GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL---F------LPFKNLGLIIVDEEHDSSYKQQEGPRY 280 (679)
T ss_pred Hh---CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh---c------ccccCCCEEEEECCCccccccCcCCCC
Confidence 65 57899999987654321 24579999999753 1 3467899999999998653 234443
Q ss_pred HH-HHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCcccccc-eeeEeeeecCchhHHHHHHHH
Q 000756 644 ES-IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPL-SQQYIGIQVKKPLQRFQLMND 721 (1300)
Q Consensus 644 e~-iv~rl~~~~~~~~~~~riV~LSATlpn~~dva~~L~~~~~~~~~~f~~~~rpv~l-~~~~~~~~~~~~~~~~~~~~~ 721 (1300)
.. -++.. .....+.++|++||| |..+......... -........+...++ ...++.............+..
T Consensus 281 ~~r~va~~----ra~~~~~~~il~SAT-ps~~s~~~~~~g~--~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~ 353 (679)
T PRK05580 281 HARDLAVV----RAKLENIPVVLGSAT-PSLESLANAQQGR--YRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSP 353 (679)
T ss_pred cHHHHHHH----HhhccCCCEEEEcCC-CCHHHHHHHhccc--eeEEEeccccccCCCCeEEEEechhhhhhcccCCCCH
Confidence 21 11111 123567899999999 5544443322111 112222222211111 223333211000000012344
Q ss_pred HHHHHHHHHhC-CCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhh----------ccc-----
Q 000756 722 LCYEKVVAVAG-KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTD----------MVK----- 785 (1300)
Q Consensus 722 ~~~~~i~~~~~-~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~----------~~~----- 785 (1300)
.+++.+.+... ++|+|||+|.|..+-.+...-+.....+..+...+..+.......+.+|+ .|.
T Consensus 354 ~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~ 433 (679)
T PRK05580 354 PLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLV 433 (679)
T ss_pred HHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeE
Confidence 56666666555 66999999999877665555554443333333322221111111111111 111
Q ss_pred ---------chhhhhhhc-CCeEEecCCCCH--HHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEE--ecceeccC
Q 000756 786 ---------SNDLKDLLP-YGFAIHHAGMTR--GDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVII--KGTQIYNP 851 (1300)
Q Consensus 786 ---------~~~L~~ll~-~gv~~~Hagl~~--~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI--~~t~~yd~ 851 (1300)
...|+..++ ..|...|+.+.+ .+++.+++.|++|+++|||+|+.+++|+|+|++++|+ +.+...+.
T Consensus 434 ~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~ 513 (679)
T PRK05580 434 PVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFS 513 (679)
T ss_pred EeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccC
Confidence 134555544 578899999874 6789999999999999999999999999999999874 32322222
Q ss_pred CCCCcccCCHHHHHHhhhccCCCCCCCceEEEEEeCCCcHHHHH
Q 000756 852 EKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYL 895 (1300)
Q Consensus 852 ~~g~~~~~S~~d~lQr~GRAGR~g~d~~G~~iil~~~~~~~~y~ 895 (1300)
+.-+..+-....|+|++|||||.+ ..|.+++.|...+...+.
T Consensus 514 pdfra~Er~~~~l~q~~GRagR~~--~~g~viiqT~~p~~~~~~ 555 (679)
T PRK05580 514 PDFRASERTFQLLTQVAGRAGRAE--KPGEVLIQTYHPEHPVIQ 555 (679)
T ss_pred CccchHHHHHHHHHHHHhhccCCC--CCCEEEEEeCCCCCHHHH
Confidence 222223335678999999999965 889999999877644443
No 84
>PRK13766 Hef nuclease; Provisional
Probab=99.95 E-value=2.4e-26 Score=298.79 Aligned_cols=333 Identities=23% Similarity=0.331 Sum_probs=219.0
Q ss_pred CCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhh
Q 000756 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (1300)
Q Consensus 493 ~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~ 572 (1300)
.-.++++|.+++..++.+ |+||++|||+|||.+|.+++...+.. .+.++|||+|+++|+.|+...+++
T Consensus 13 ~~~~r~yQ~~~~~~~l~~--n~lv~~ptG~GKT~~a~~~i~~~l~~----------~~~~vLvl~Pt~~L~~Q~~~~~~~ 80 (773)
T PRK13766 13 TIEARLYQQLLAATALKK--NTLVVLPTGLGKTAIALLVIAERLHK----------KGGKVLILAPTKPLVEQHAEFFRK 80 (773)
T ss_pred cCCccHHHHHHHHHHhcC--CeEEEcCCCccHHHHHHHHHHHHHHh----------CCCeEEEEeCcHHHHHHHHHHHHH
Confidence 447899999999998876 79999999999999999998887742 134899999999999999999998
Q ss_pred hcccCCcEEEEEeCCCccchh--hhccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccCChhHHHHHHHHH
Q 000756 573 RLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVART 650 (1300)
Q Consensus 573 ~l~~~gi~V~~ltGd~~~~~~--~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl 650 (1300)
.+...+.++..++|+...... ...+++|+|+||+.+...... ....+..+++|||||||++....+ +..+..+.
T Consensus 81 ~~~~~~~~v~~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~--~~~~~~~~~liVvDEaH~~~~~~~--~~~i~~~~ 156 (773)
T PRK13766 81 FLNIPEEKIVVFTGEVSPEKRAELWEKAKVIVATPQVIENDLIA--GRISLEDVSLLIFDEAHRAVGNYA--YVYIAERY 156 (773)
T ss_pred HhCCCCceEEEEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHc--CCCChhhCcEEEEECCcccccccc--HHHHHHHH
Confidence 776445688889998765432 245789999999976322211 123467899999999999864322 22222222
Q ss_pred HHHHhhccCCeeEEEEcccCCC-hHHH---HHHHhccccCceEEecCCcc----cc--cceeeEeeeecCchh-------
Q 000756 651 VRQIETTKEHIRLVGLSATLPN-YEDV---ALFLRVNLEKGLFYFDNSYR----PV--PLSQQYIGIQVKKPL------- 713 (1300)
Q Consensus 651 ~~~~~~~~~~~riV~LSATlpn-~~dv---a~~L~~~~~~~~~~f~~~~r----pv--~l~~~~~~~~~~~~~------- 713 (1300)
.......+++|||||... ...+ ...|+... +.+.+.+. +. +....++.+......
T Consensus 157 ----~~~~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~----v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l 228 (773)
T PRK13766 157 ----HEDAKNPLVLGLTASPGSDEEKIKEVCENLGIEH----VEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLL 228 (773)
T ss_pred ----HhcCCCCEEEEEEcCCCCCHHHHHHHHHhCCceE----EEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHH
Confidence 223456789999999532 2233 33332210 11111110 00 000000000000000
Q ss_pred ---------------------------------HH---------------HH----------------------------
Q 000756 714 ---------------------------------QR---------------FQ---------------------------- 717 (1300)
Q Consensus 714 ---------------------------------~~---------------~~---------------------------- 717 (1300)
.. ..
T Consensus 229 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~ 308 (773)
T PRK13766 229 NEALKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLE 308 (773)
T ss_pred HHHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 00 00
Q ss_pred --------------------------HHH------------HHHHHHHHHH---hCCCeEEEEEcChHHHHHHHHHHHHH
Q 000756 718 --------------------------LMN------------DLCYEKVVAV---AGKHQVLIFVHSRKETAKTARAIRDT 756 (1300)
Q Consensus 718 --------------------------~~~------------~~~~~~i~~~---~~~~~vLVFv~sr~~~~~~a~~L~~~ 756 (1300)
.+. ..+.+.+.+. .++.++||||.++..|..++..|...
T Consensus 309 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~ 388 (773)
T PRK13766 309 RLREEARSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKE 388 (773)
T ss_pred HHHhhccccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhC
Confidence 000 0000011111 24679999999999999999988654
Q ss_pred hhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCC
Q 000756 757 ALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNL 836 (1300)
Q Consensus 757 ~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdl 836 (1300)
+..... +.. .+...-|+||++.+|..+++.|++|.++|||||+++++|+|+
T Consensus 389 ~~~~~~---~~g--------------------------~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi 439 (773)
T PRK13766 389 GIKAVR---FVG--------------------------QASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDI 439 (773)
T ss_pred CCceEE---EEc--------------------------cccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCc
Confidence 322110 000 000002567999999999999999999999999999999999
Q ss_pred CCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCCCCCCceEEEEEeCCCcH
Q 000756 837 PAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL 891 (1300)
Q Consensus 837 Pav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d~~G~~iil~~~~~~ 891 (1300)
|++++||+ ||++. +...|+||+||+||.| .|.+++++.....
T Consensus 440 ~~~~~VI~----yd~~~------s~~r~iQR~GR~gR~~---~~~v~~l~~~~t~ 481 (773)
T PRK13766 440 PSVDLVIF----YEPVP------SEIRSIQRKGRTGRQE---EGRVVVLIAKGTR 481 (773)
T ss_pred ccCCEEEE----eCCCC------CHHHHHHHhcccCcCC---CCEEEEEEeCCCh
Confidence 99999998 88765 8889999999999975 5888888876543
No 85
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.95 E-value=7.3e-28 Score=266.18 Aligned_cols=331 Identities=18% Similarity=0.298 Sum_probs=231.9
Q ss_pred hHhhcCCCCC-CCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHH
Q 000756 486 AQPAFKGMTQ-LNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564 (1300)
Q Consensus 486 ~~~~f~g~~~-ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~ 564 (1300)
+.+.| |+.. -++.|.+++.++..++.+|.||+|||+||++||.||.|-. +...|++.|..||+.
T Consensus 11 LKK~F-Gh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~--------------~gITIV~SPLiALIk 75 (641)
T KOG0352|consen 11 LKKLF-GHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH--------------GGITIVISPLIALIK 75 (641)
T ss_pred HHHHh-CchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh--------------CCeEEEehHHHHHHH
Confidence 34445 4544 4799999999999999999999999999999999998743 225788999999999
Q ss_pred HHHHHHhhhcccCCcEEEEEeCCCccchh---------hhccceEEEECcchH-----HHHHhhcCCCcccccccEEEEe
Q 000756 565 EVVGNLSNRLQMYDVKVRELSGDQTLTRQ---------QIEETQIIVTTPEKW-----DIITRKSGDRTYTQLVKLLIID 630 (1300)
Q Consensus 565 q~~~~~~~~l~~~gi~V~~ltGd~~~~~~---------~~~~~~IIV~TPekl-----d~l~r~~~~~~~l~~v~liIiD 630 (1300)
.+.+.+.++ .+.+..+....+...+ ...+..+++.|||.. .-++... ..-..++++++|
T Consensus 76 DQiDHL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L---~~r~~L~Y~vVD 148 (641)
T KOG0352|consen 76 DQIDHLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGL---ANRDVLRYIVVD 148 (641)
T ss_pred HHHHHHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHH---hhhceeeeEEec
Confidence 999998763 2344444333221111 124678999999973 2222222 123457899999
Q ss_pred ccccccc---CChhHHHHHHHHHHHHHhhccCCeeEEEEcccCCC--hHHHHHHHhccccCceEEe-cCCcccccceeeE
Q 000756 631 EIHLLHD---NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN--YEDVALFLRVNLEKGLFYF-DNSYRPVPLSQQY 704 (1300)
Q Consensus 631 EaH~l~d---~rg~~le~iv~rl~~~~~~~~~~~riV~LSATlpn--~~dva~~L~~~~~~~~~~f-~~~~rpv~l~~~~ 704 (1300)
|+|++.. +++|.+-.+-+ +.+..+.+..|+|+||-.. -+|+..-|+.. ..+-.| .+.||..- |
T Consensus 149 EAHCVSQWGHDFRPDYL~LG~-----LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~--~PVAiFkTP~FR~NL----F 217 (641)
T KOG0352|consen 149 EAHCVSQWGHDFRPDYLTLGS-----LRSVCPGVPWVALTATANAKVQEDIAFQLKLR--NPVAIFKTPTFRDNL----F 217 (641)
T ss_pred hhhhHhhhccccCcchhhhhh-----HHhhCCCCceEEeecccChhHHHHHHHHHhhc--CcHHhccCcchhhhh----h
Confidence 9999864 45665543322 2344678899999999543 35777777654 223233 23444321 1
Q ss_pred eeeecCch-hHHHHHHHHHHHHHHH------HHhC--CCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHH
Q 000756 705 IGIQVKKP-LQRFQLMNDLCYEKVV------AVAG--KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSRE 775 (1300)
Q Consensus 705 ~~~~~~~~-~~~~~~~~~~~~~~i~------~~~~--~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~ 775 (1300)
..+..+.. ..-+..+.+.+...+- +..+ .+..||||.||.+|+++|-.|...+..
T Consensus 218 YD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~---------------- 281 (641)
T KOG0352|consen 218 YDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIP---------------- 281 (641)
T ss_pred HHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcc----------------
Confidence 11111111 1112333333332221 1111 457899999999999999888665422
Q ss_pred HHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCC
Q 000756 776 ILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGA 855 (1300)
Q Consensus 776 ~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~ 855 (1300)
...+|+||...+|..|.+.+-+|.+.||+||..+++|||-|+|+.||+ ||++.
T Consensus 282 ---------------------A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViH----W~~~q-- 334 (641)
T KOG0352|consen 282 ---------------------AMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIH----WSPSQ-- 334 (641)
T ss_pred ---------------------hHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEe----cCchh--
Confidence 234699999999999999999999999999999999999999999999 99887
Q ss_pred cccCCHHHHHHhhhccCCCCCCCceEEEEEeCCCcHHHHHHhh
Q 000756 856 WTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLM 898 (1300)
Q Consensus 856 ~~~~S~~d~lQr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll 898 (1300)
+..-|.|-.|||||.| ....|-++++..+.+...=++
T Consensus 335 ----n~AgYYQESGRAGRDG--k~SyCRLYYsR~D~~~i~FLi 371 (641)
T KOG0352|consen 335 ----NLAGYYQESGRAGRDG--KRSYCRLYYSRQDKNALNFLV 371 (641)
T ss_pred ----hhHHHHHhccccccCC--CccceeeeecccchHHHHHHH
Confidence 8999999999999998 788999999988876654333
No 86
>PRK14701 reverse gyrase; Provisional
Probab=99.95 E-value=3.4e-27 Score=314.58 Aligned_cols=330 Identities=18% Similarity=0.219 Sum_probs=217.2
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHH
Q 000756 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1300)
Q Consensus 491 ~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~ 570 (1300)
.|| +|+++|.++++.++.+. +++++||||+|||++++++.+.... .+.++|||+||++|+.|++..+
T Consensus 76 ~G~-~pt~iQ~~~i~~il~G~-d~li~APTGsGKTl~~~~~al~~~~-----------~g~~aLVl~PTreLa~Qi~~~l 142 (1638)
T PRK14701 76 TGF-EFWSIQKTWAKRILRGK-SFSIVAPTGMGKSTFGAFIALFLAL-----------KGKKCYIILPTTLLVKQTVEKI 142 (1638)
T ss_pred hCC-CCCHHHHHHHHHHHcCC-CEEEEEcCCCCHHHHHHHHHHHHHh-----------cCCeEEEEECHHHHHHHHHHHH
Confidence 478 69999999999999874 6999999999999976655544321 1458999999999999999999
Q ss_pred hhhcccC--CcEEEEEeCCCccchhh-----h--ccceEEEECcchHHHHHhhcCCCcccccccEEEEeccccccc----
Q 000756 571 SNRLQMY--DVKVRELSGDQTLTRQQ-----I--EETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD---- 637 (1300)
Q Consensus 571 ~~~l~~~--gi~V~~ltGd~~~~~~~-----~--~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d---- 637 (1300)
+..+... ++++..++|+.+...+. + ..++|+|+||+.+....... ....+++|||||||++.+
T Consensus 143 ~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l----~~~~i~~iVVDEAD~ml~~~kn 218 (1638)
T PRK14701 143 ESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM----KHLKFDFIFVDDVDAFLKASKN 218 (1638)
T ss_pred HHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH----hhCCCCEEEEECceeccccccc
Confidence 9877654 56778888987655431 1 25899999999753222211 125689999999999864
Q ss_pred --------CChhHHHH----HHH---------------HHHHHHhhccCCee-EEEEcccCCChHHHHHHHhccccCceE
Q 000756 638 --------NRGPVLES----IVA---------------RTVRQIETTKEHIR-LVGLSATLPNYEDVALFLRVNLEKGLF 689 (1300)
Q Consensus 638 --------~rg~~le~----iv~---------------rl~~~~~~~~~~~r-iV~LSATlpn~~dva~~L~~~~~~~~~ 689 (1300)
++.+.+.. ++. ++...+...+...+ ++.+|||++...++..+++.. .
T Consensus 219 id~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~-----l 293 (1638)
T PRK14701 219 IDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYREL-----L 293 (1638)
T ss_pred cchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcC-----e
Confidence 34444432 211 11111112233444 577999998655666666422 1
Q ss_pred EecCCc-ccc--cceeeEeeeecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEEcChHHH---HHHHHHHHHHhhccccc
Q 000756 690 YFDNSY-RPV--PLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKET---AKTARAIRDTALENDTL 763 (1300)
Q Consensus 690 ~f~~~~-rpv--~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~---~~~a~~L~~~~~~~~~l 763 (1300)
.|.... ++. .+.+.++..... .+ .. +...+ ... +.++||||+|++.+ +.++..|...+
T Consensus 294 ~f~v~~~~~~lr~i~~~yi~~~~~---~k-~~----L~~ll-~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~G------ 357 (1638)
T PRK14701 294 GFEVGSGRSALRNIVDVYLNPEKI---IK-EH----VRELL-KKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDG------ 357 (1638)
T ss_pred EEEecCCCCCCCCcEEEEEECCHH---HH-HH----HHHHH-HhC-CCCeEEEEeccccchHHHHHHHHHHHCC------
Confidence 232222 221 233444332211 11 11 12222 222 46899999998864 78888887654
Q ss_pred ccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEecc----ccccccCCCC-
Q 000756 764 GRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTA----TLAWGVNLPA- 838 (1300)
Q Consensus 764 ~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~----tla~GVdlPa- 838 (1300)
+.++.+||+ |..+++.|++|.++|||||+ +++||||+|+
T Consensus 358 -------------------------------i~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~ 401 (1638)
T PRK14701 358 -------------------------------FKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPER 401 (1638)
T ss_pred -------------------------------CeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCc
Confidence 335677985 88999999999999999994 8999999999
Q ss_pred cEEEEecceeccCCCCCcc---cC-------CHHHHHHhhhccCCCCCCCceEEEEEeCCCcHHHHHHhhcC
Q 000756 839 HTVIIKGTQIYNPEKGAWT---EL-------SPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQ 900 (1300)
Q Consensus 839 v~vVI~~t~~yd~~~g~~~---~~-------S~~d~lQr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~ 900 (1300)
+++||+ |+.|+.++. .+ .....+++.|||||.| ..+.++..+.........+++..
T Consensus 402 Vryvi~----~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g--~~~~~~~~~~~~~~~~~~~~l~~ 467 (1638)
T PRK14701 402 IRFAVF----YGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEG--IPIEGVLDVFPEDVEFLRSILKD 467 (1638)
T ss_pred cCEEEE----eCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccC--CcchhHHHhHHHHHHHHHHHhcc
Confidence 999998 887774320 00 0123567789999988 56666544444444444444443
No 87
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.95 E-value=2e-27 Score=299.84 Aligned_cols=328 Identities=23% Similarity=0.273 Sum_probs=248.0
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHH
Q 000756 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1300)
Q Consensus 491 ~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~ 570 (1300)
.|.+.|++-|.+++.+++.+. .++|.+|||+||++||.+|++-. +...|+|.|..+|++.++..+
T Consensus 260 Fg~~~FR~~Q~eaI~~~l~Gk-d~fvlmpTG~GKSLCYQlPA~l~--------------~gitvVISPL~SLm~DQv~~L 324 (941)
T KOG0351|consen 260 FGHKGFRPNQLEAINATLSGK-DCFVLMPTGGGKSLCYQLPALLL--------------GGVTVVISPLISLMQDQVTHL 324 (941)
T ss_pred hccccCChhHHHHHHHHHcCC-ceEEEeecCCceeeEeecccccc--------------CCceEEeccHHHHHHHHHHhh
Confidence 588999999999999877764 58999999999999999987632 236899999999999998887
Q ss_pred hhhcccCCcEEEEEeCCCccchh-----hh--c--cceEEEECcchH---HHHHhhcCCCcccccccEEEEeccccccc-
Q 000756 571 SNRLQMYDVKVRELSGDQTLTRQ-----QI--E--ETQIIVTTPEKW---DIITRKSGDRTYTQLVKLLIIDEIHLLHD- 637 (1300)
Q Consensus 571 ~~~l~~~gi~V~~ltGd~~~~~~-----~~--~--~~~IIV~TPekl---d~l~r~~~~~~~l~~v~liIiDEaH~l~d- 637 (1300)
.. .+|....++++.....+ .+ + ..+|++.|||++ ..+.+..........+.++||||||++..
T Consensus 325 ~~----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqW 400 (941)
T KOG0351|consen 325 SK----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQW 400 (941)
T ss_pred hh----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhh
Confidence 33 47888888887765422 11 2 579999999986 22222222112223388999999999864
Q ss_pred --CChhHHHHHHHHHHHHHhhccCCeeEEEEcccCCC--hHHHHHHHhccccCceEEecCCcccccceeeEeeeecCchh
Q 000756 638 --NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN--YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713 (1300)
Q Consensus 638 --~rg~~le~iv~rl~~~~~~~~~~~riV~LSATlpn--~~dva~~L~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~ 713 (1300)
+++|.+..+-.-. .....+.+|+||||... .+||.+-|+... ...|..++-+..+...+..-....
T Consensus 401 gHdFRp~Yk~l~~l~-----~~~~~vP~iALTATAT~~v~~DIi~~L~l~~---~~~~~~sfnR~NL~yeV~~k~~~~-- 470 (941)
T KOG0351|consen 401 GHDFRPSYKRLGLLR-----IRFPGVPFIALTATATERVREDVIRSLGLRN---PELFKSSFNRPNLKYEVSPKTDKD-- 470 (941)
T ss_pred cccccHHHHHHHHHH-----hhCCCCCeEEeehhccHHHHHHHHHHhCCCC---cceecccCCCCCceEEEEeccCcc--
Confidence 4666665543211 22345899999999743 578888888642 235666766666654443322111
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhh
Q 000756 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793 (1300)
Q Consensus 714 ~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll 793 (1300)
....+...+........+||||.+|++|+.++..|+..+.
T Consensus 471 -----~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~----------------------------------- 510 (941)
T KOG0351|consen 471 -----ALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGK----------------------------------- 510 (941)
T ss_pred -----chHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhch-----------------------------------
Confidence 0112233344555578999999999999999999987652
Q ss_pred cCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCC
Q 000756 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (1300)
Q Consensus 794 ~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR 873 (1300)
..++|||||+..+|..|.+.|-.++++|+|||=++++|||.|+|+.||+ |..++ |...|.|-+|||||
T Consensus 511 --~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH----~~lPk------s~E~YYQE~GRAGR 578 (941)
T KOG0351|consen 511 --SAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIH----YSLPK------SFEGYYQEAGRAGR 578 (941)
T ss_pred --hhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEE----CCCch------hHHHHHHhccccCc
Confidence 2367899999999999999999999999999999999999999999999 88777 89999999999999
Q ss_pred CCCCCceEEEEEeCCCcHHHHHHhhcCC
Q 000756 874 PQYDSYGEGIIITGHSELRYYLSLMNQQ 901 (1300)
Q Consensus 874 ~g~d~~G~~iil~~~~~~~~y~~ll~~~ 901 (1300)
.| ....|++++...+......++...
T Consensus 579 DG--~~s~C~l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 579 DG--LPSSCVLLYGYADISELRRLLTSG 604 (941)
T ss_pred CC--CcceeEEecchhHHHHHHHHHHcc
Confidence 98 788999999988777776666544
No 88
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=2.7e-26 Score=283.30 Aligned_cols=319 Identities=16% Similarity=0.201 Sum_probs=204.0
Q ss_pred CCCCHHHHHHHHHHHcCC--CeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHh
Q 000756 494 TQLNRVQSRVYKSALSSA--DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (1300)
Q Consensus 494 ~~ln~iQ~~~i~~~l~~~--~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~ 571 (1300)
..|+|+|.+++..++..+ .+.+|++|||+|||++++.++.+. . .++|||||+..|+.|+.++|.
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l-~-------------k~tLILvps~~Lv~QW~~ef~ 319 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV-K-------------KSCLVLCTSAVSVEQWKQQFK 319 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh-C-------------CCEEEEeCcHHHHHHHHHHHH
Confidence 478999999999988654 478999999999999998665432 1 259999999999999999999
Q ss_pred hhcccCCcEEEEEeCCCccchhhhccceEEEECcchHHHHHhhcCC----Cccc--ccccEEEEecccccccCChhHHHH
Q 000756 572 NRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGD----RTYT--QLVKLLIIDEIHLLHDNRGPVLES 645 (1300)
Q Consensus 572 ~~l~~~gi~V~~ltGd~~~~~~~~~~~~IIV~TPekld~l~r~~~~----~~~l--~~v~liIiDEaH~l~d~rg~~le~ 645 (1300)
+++.-....+..++|+..... .....|+|+|+..+....++... ...+ ..+++||+||||++. .+.+..
T Consensus 320 ~~~~l~~~~I~~~tg~~k~~~--~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lp---A~~fr~ 394 (732)
T TIGR00603 320 MWSTIDDSQICRFTSDAKERF--HGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVP---AAMFRR 394 (732)
T ss_pred HhcCCCCceEEEEecCccccc--ccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccccc---HHHHHH
Confidence 876433457788888643221 23478999999854221111100 0112 357899999999985 233333
Q ss_pred HHHHHHHHHhhccCCeeEEEEcccCCCh----HHHHHHHhccccCceEEec-------CCcccccceeeEeeeecC----
Q 000756 646 IVARTVRQIETTKEHIRLVGLSATLPNY----EDVALFLRVNLEKGLFYFD-------NSYRPVPLSQQYIGIQVK---- 710 (1300)
Q Consensus 646 iv~rl~~~~~~~~~~~riV~LSATlpn~----~dva~~L~~~~~~~~~~f~-------~~~rpv~l~~~~~~~~~~---- 710 (1300)
++..+ . ....+|||||+... .++...++-. +|... +-.-|+......+..+..
T Consensus 395 il~~l-------~-a~~RLGLTATP~ReD~~~~~L~~LiGP~----vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~ 462 (732)
T TIGR00603 395 VLTIV-------Q-AHCKLGLTATLVREDDKITDLNFLIGPK----LYEANWMELQKKGFIANVQCAEVWCPMTPEFYRE 462 (732)
T ss_pred HHHhc-------C-cCcEEEEeecCcccCCchhhhhhhcCCe----eeecCHHHHHhCCccccceEEEEEecCCHHHHHH
Confidence 33221 2 33569999996521 1222222211 11110 000011111111111110
Q ss_pred ------chhHHHHHHHHHHHH---HHHHHh--CCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHh
Q 000756 711 ------KPLQRFQLMNDLCYE---KVVAVA--GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQS 779 (1300)
Q Consensus 711 ------~~~~~~~~~~~~~~~---~i~~~~--~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~ 779 (1300)
.....+..++..-+. .+.... .+.++||||.+...+..++..|
T Consensus 463 yl~~~~~~k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L-------------------------- 516 (732)
T TIGR00603 463 YLRENSRKRMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL-------------------------- 516 (732)
T ss_pred HHHhcchhhhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc--------------------------
Confidence 000011122221111 122222 4779999999988776666543
Q ss_pred hhhcccchhhhhhhcCCeEEecCCCCHHHHHHHHHHHhCC-CccEEEeccccccccCCCCcEEEEecceeccCCCCCccc
Q 000756 780 HTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDG-HVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTE 858 (1300)
Q Consensus 780 ~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g-~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~ 858 (1300)
|+.++||+++..+|..+++.|+.| .+++||+|.++.+|||+|++++||. ++++.|
T Consensus 517 ----------------~~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~----~s~~~g---- 572 (732)
T TIGR00603 517 ----------------GKPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQ----ISSHYG---- 572 (732)
T ss_pred ----------------CCceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEE----eCCCCC----
Confidence 234579999999999999999875 8899999999999999999999997 776544
Q ss_pred CCHHHHHHhhhccCCCCCCCc-----eEEEEEeCCCcHHHH
Q 000756 859 LSPLDIMQMLGRAGRPQYDSY-----GEGIIITGHSELRYY 894 (1300)
Q Consensus 859 ~S~~d~lQr~GRAGR~g~d~~-----G~~iil~~~~~~~~y 894 (1300)
|...|+||+||++|++.+.. ...|.+.+.+..+.+
T Consensus 573 -S~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~ 612 (732)
T TIGR00603 573 -SRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMY 612 (732)
T ss_pred -CHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHH
Confidence 89999999999999974332 233677777665544
No 89
>PRK09401 reverse gyrase; Reviewed
Probab=99.95 E-value=1.5e-26 Score=303.00 Aligned_cols=304 Identities=22% Similarity=0.217 Sum_probs=202.0
Q ss_pred CCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHh
Q 000756 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (1300)
Q Consensus 492 g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~ 571 (1300)
|+ .|+++|..+++.++.+ ++++++||||+|||..+ ++++..+.. .+.+++||+||++||.|+++.++
T Consensus 78 G~-~pt~iQ~~~i~~il~g-~dv~i~ApTGsGKT~f~-l~~~~~l~~----------~g~~alIL~PTreLa~Qi~~~l~ 144 (1176)
T PRK09401 78 GS-KPWSLQRTWAKRLLLG-ESFAIIAPTGVGKTTFG-LVMSLYLAK----------KGKKSYIIFPTRLLVEQVVEKLE 144 (1176)
T ss_pred CC-CCcHHHHHHHHHHHCC-CcEEEEcCCCCCHHHHH-HHHHHHHHh----------cCCeEEEEeccHHHHHHHHHHHH
Confidence 56 8999999999999877 67999999999999744 444433332 24589999999999999999999
Q ss_pred hhcccCCcEEEEEeCCCccc---hh----h--hccceEEEECcchHHHHHhhcCCCcccccccEEEEeccccccc-C---
Q 000756 572 NRLQMYDVKVRELSGDQTLT---RQ----Q--IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-N--- 638 (1300)
Q Consensus 572 ~~l~~~gi~V~~ltGd~~~~---~~----~--~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d-~--- 638 (1300)
+.....++.+..++|+.... .. . ...++|+|+||+++...... .....+++|||||||.+.+ .
T Consensus 145 ~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~----l~~~~~~~lVvDEaD~~L~~~k~i 220 (1176)
T PRK09401 145 KFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDE----LPKKKFDFVFVDDVDAVLKSSKNI 220 (1176)
T ss_pred HHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHh----ccccccCEEEEEChHHhhhcccch
Confidence 98888888888888765431 11 1 13589999999986333321 2234599999999999874 1
Q ss_pred --------Ch-hHHHHHHHHHHH----------------HHhh-ccCCeeEEEEcccCCChHHHHH-HHhccccCceEEe
Q 000756 639 --------RG-PVLESIVARTVR----------------QIET-TKEHIRLVGLSATLPNYEDVAL-FLRVNLEKGLFYF 691 (1300)
Q Consensus 639 --------rg-~~le~iv~rl~~----------------~~~~-~~~~~riV~LSATlpn~~dva~-~L~~~~~~~~~~f 691 (1300)
+. ..++.++..+.. .+.. .....+++++|||++.. .+.. +++.. - .|..
T Consensus 221 d~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~-~~~~~l~~~l-l--~~~v 296 (1176)
T PRK09401 221 DKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPR-GNRVKLFREL-L--GFEV 296 (1176)
T ss_pred hhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCcc-chHHHHhhcc-c--eEEe
Confidence 21 234444433211 0100 12267899999998642 1211 22111 0 0111
Q ss_pred cCC-cccccceeeEeeeecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEEcChHH---HHHHHHHHHHHhhccccccccc
Q 000756 692 DNS-YRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKE---TAKTARAIRDTALENDTLGRFL 767 (1300)
Q Consensus 692 ~~~-~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~---~~~~a~~L~~~~~~~~~l~~~l 767 (1300)
... ...-.+.+.++... . +...+.. +.... +.++||||++++. +..++..|...+
T Consensus 297 ~~~~~~~rnI~~~yi~~~--~---k~~~L~~-----ll~~l-~~~~LIFv~t~~~~~~ae~l~~~L~~~g---------- 355 (1176)
T PRK09401 297 GSPVFYLRNIVDSYIVDE--D---SVEKLVE-----LVKRL-GDGGLIFVPSDKGKEYAEELAEYLEDLG---------- 355 (1176)
T ss_pred cCcccccCCceEEEEEcc--c---HHHHHHH-----HHHhc-CCCEEEEEecccChHHHHHHHHHHHHCC----------
Confidence 111 11123444454332 1 1122221 12222 4689999999887 999998887654
Q ss_pred ccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEe----ccccccccCCCC-cEEE
Q 000756 768 KEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVS----TATLAWGVNLPA-HTVI 842 (1300)
Q Consensus 768 ~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVa----T~tla~GVdlPa-v~vV 842 (1300)
+.++.+||+| .| .++.|++|.++|||| |++++||||+|+ +++|
T Consensus 356 ---------------------------i~v~~~hg~l---~~--~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryV 403 (1176)
T PRK09401 356 ---------------------------INAELAISGF---ER--KFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYA 403 (1176)
T ss_pred ---------------------------CcEEEEeCcH---HH--HHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEE
Confidence 3367789999 22 349999999999999 689999999999 8999
Q ss_pred EecceeccCCCCCcccCCHHHHHHhhhccCC
Q 000756 843 IKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (1300)
Q Consensus 843 I~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR 873 (1300)
|+ |+.|+.++.---...+.||+||+-+
T Consensus 404 I~----y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 404 IF----YGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred EE----eCCCCEEEeccccccCHHHHHHHHh
Confidence 98 8877644432234568999999864
No 90
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=2.4e-26 Score=258.05 Aligned_cols=426 Identities=18% Similarity=0.204 Sum_probs=286.2
Q ss_pred HHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcccCCc
Q 000756 500 QSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDV 579 (1300)
Q Consensus 500 Q~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~~gi 579 (1300)
|..-|-..+..++-++++|.||||||+......+.....+. .-|.+..|+|--|.+++.++.. ++.+
T Consensus 51 ~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~----------~~v~CTQprrvaamsva~RVad---EMDv 117 (699)
T KOG0925|consen 51 QKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL----------TGVACTQPRRVAAMSVAQRVAD---EMDV 117 (699)
T ss_pred hHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc----------cceeecCchHHHHHHHHHHHHH---Hhcc
Confidence 56677778888899999999999999987776666554432 2489999999999999988865 4456
Q ss_pred EEEEEeCCCc-cchhhhccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccCChhHHHHHHHHHHHHHhhcc
Q 000756 580 KVRELSGDQT-LTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTK 658 (1300)
Q Consensus 580 ~V~~ltGd~~-~~~~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~ 658 (1300)
+++.-.|-+- ..+-...++-+-+||.+ +++|.......+..+++||+||||. +..-..++..+++.+....
T Consensus 118 ~lG~EVGysIrfEdC~~~~T~Lky~tDg---mLlrEams~p~l~~y~viiLDeahE-----RtlATDiLmGllk~v~~~r 189 (699)
T KOG0925|consen 118 TLGEEVGYSIRFEDCTSPNTLLKYCTDG---MLLREAMSDPLLGRYGVIILDEAHE-----RTLATDILMGLLKEVVRNR 189 (699)
T ss_pred ccchhccccccccccCChhHHHHHhcch---HHHHHHhhCcccccccEEEechhhh-----hhHHHHHHHHHHHHHHhhC
Confidence 6666665432 22212233445567776 7888887778999999999999998 3444555556666665667
Q ss_pred CCeeEEEEcccCCChHHHHHHHhccccCceEEecCCcccccceeeEeeeecCchhHHHHHHHHHHHHHHHHHhCCCeEEE
Q 000756 659 EHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLI 738 (1300)
Q Consensus 659 ~~~riV~LSATlpn~~dva~~L~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLV 738 (1300)
+..++|.||||+ ....+..|++..| +....+ ..| ++..|..-.++ ..+.+....+++..... ..+.+||
T Consensus 190 pdLk~vvmSatl-~a~Kfq~yf~n~P---ll~vpg-~~P--vEi~Yt~e~er---DylEaairtV~qih~~e-e~GDilv 258 (699)
T KOG0925|consen 190 PDLKLVVMSATL-DAEKFQRYFGNAP---LLAVPG-THP--VEIFYTPEPER---DYLEAAIRTVLQIHMCE-EPGDILV 258 (699)
T ss_pred CCceEEEeeccc-chHHHHHHhCCCC---eeecCC-CCc--eEEEecCCCCh---hHHHHHHHHHHHHHhcc-CCCCEEE
Confidence 899999999997 5678888887654 444444 333 44444433333 34555555555543332 3789999
Q ss_pred EEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHHHHHHHh-
Q 000756 739 FVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFG- 817 (1300)
Q Consensus 739 Fv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~- 817 (1300)
|..+..+.+..++.+...... + ..++.+..|..+| +..+..+++...
T Consensus 259 FLtgeeeIe~aC~~i~re~~~---L-------------------------~~~~g~l~v~PLy----P~~qq~iFep~p~ 306 (699)
T KOG0925|consen 259 FLTGEEEIEDACRKISREVDN---L-------------------------GPQVGPLKVVPLY----PAQQQRIFEPAPE 306 (699)
T ss_pred EecCHHHHHHHHHHHHHHHHh---h-------------------------ccccCCceEEecC----chhhccccCCCCc
Confidence 999999999998888654311 1 0123334566666 233333332221
Q ss_pred --CC--CccEEEeccccccccCCCCcEEEEec----ceeccCCCCC----cccCCHHHHHHhhhccCCCCCCCceEEEEE
Q 000756 818 --DG--HVQVLVSTATLAWGVNLPAHTVIIKG----TQIYNPEKGA----WTELSPLDIMQMLGRAGRPQYDSYGEGIII 885 (1300)
Q Consensus 818 --~g--~i~VLVaT~tla~GVdlPav~vVI~~----t~~yd~~~g~----~~~~S~~d~lQr~GRAGR~g~d~~G~~iil 885 (1300)
+| ..+|+|+|++++..+.++++.+||+- .++|+|.-.. ..++|..+..||.|||||. ++|+|+.+
T Consensus 307 ~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt---~pGkcfrL 383 (699)
T KOG0925|consen 307 KRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRL 383 (699)
T ss_pred ccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC---CCCceEEe
Confidence 12 46899999999999999999999984 5789987542 3689999999999999997 69999999
Q ss_pred eCCCcHHHHHHhhcCCCCcccchhHhHHHHHHHHHHhccccCHHHHHHHHHhhHHHHHHhcCCcccCCCccccccchhhh
Q 000756 886 TGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLG 965 (1300)
Q Consensus 886 ~~~~~~~~y~~ll~~~lPiES~l~~~l~d~lnaEI~~g~i~~~~d~~~wL~~T~ly~r~~~nP~~y~~~~~~~~~~~~l~ 965 (1300)
++..- |.+-+. +.--+||...+ |+.|-|..+-+ ..-++.+ .+.+.
T Consensus 384 Yte~~---~~~em~--------------~~typeilrsN----------L~s~VL~LKkl---gI~dlvh-----fdfmD 428 (699)
T KOG0925|consen 384 YTEEA---FEKEMQ--------------PQTYPEILRSN----------LSSTVLQLKKL---GIDDLVH-----FDFMD 428 (699)
T ss_pred ecHHh---hhhcCC--------------CCCcHHHHHHh----------hHHHHHHHHhc---CcccccC-----CcCCC
Confidence 98532 222111 11122333322 22222221111 1111122 22233
Q ss_pred hHHHHHHHHHHHHHHHCCCccccccCCceeeccccccccccccccccHHHHHhhcCCCCChHHHHHHh
Q 000756 966 ERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLF 1033 (1300)
Q Consensus 966 ~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~ias~~yi~~~T~~~~~~~l~~~~~~~~il~il 1033 (1300)
++--+.+..|++.|.-.++++-|. .+|++|.+||.|+++|.-++++..+...+|+ .+++.|-
T Consensus 429 pPAPEtLMrALE~LnYLaaLdDdG-----nLT~lG~imSEFPLdPqLAkmLi~S~efnCs-nEiLsis 490 (699)
T KOG0925|consen 429 PPAPETLMRALEVLNYLAALDDDG-----NLTSLGEIMSEFPLDPQLAKMLIGSCEFNCS-NEILSIS 490 (699)
T ss_pred CCChHHHHHHHHHhhhhhhhCCCc-----ccchhhhhhhcCCCChHHHHHHhhcCCCCch-HHHHHHH
Confidence 334466788999999999987543 4899999999999999999999998888877 5666443
No 91
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=1.9e-25 Score=272.83 Aligned_cols=319 Identities=16% Similarity=0.144 Sum_probs=217.8
Q ss_pred CCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhc
Q 000756 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1300)
Q Consensus 495 ~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l 574 (1300)
.|+++|..+++.++.+. |..+.||+|||++|.+|++..... ++.+++++|++.||.|.+..+...+
T Consensus 103 ~p~~VQ~~~~~~ll~G~---Iae~~TGeGKTla~~lp~~~~al~-----------G~~v~VvTptreLA~qdae~~~~l~ 168 (656)
T PRK12898 103 RHFDVQLMGGLALLSGR---LAEMQTGEGKTLTATLPAGTAALA-----------GLPVHVITVNDYLAERDAELMRPLY 168 (656)
T ss_pred CCChHHHHHHHHHhCCC---eeeeeCCCCcHHHHHHHHHHHhhc-----------CCeEEEEcCcHHHHHHHHHHHHHHH
Confidence 67899999999998774 999999999999999999976543 4579999999999999999999999
Q ss_pred ccCCcEEEEEeCCCccchh-hhccceEEEECcchH--HHHHhhcC----------------------CCcccccccEEEE
Q 000756 575 QMYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKW--DIITRKSG----------------------DRTYTQLVKLLII 629 (1300)
Q Consensus 575 ~~~gi~V~~ltGd~~~~~~-~~~~~~IIV~TPekl--d~l~r~~~----------------------~~~~l~~v~liIi 629 (1300)
..+|++|+.++|+.+...+ ....++|+|+|...+ |.|..+.. .......+.+.||
T Consensus 169 ~~lGlsv~~i~gg~~~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIv 248 (656)
T PRK12898 169 EALGLTVGCVVEDQSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIV 248 (656)
T ss_pred hhcCCEEEEEeCCCCHHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEe
Confidence 9999999999998764332 346789999999885 54433321 1133456789999
Q ss_pred ecccccc-cC-C----------hh---HHHHHHHHHHHHHh---------------------------------------
Q 000756 630 DEIHLLH-DN-R----------GP---VLESIVARTVRQIE--------------------------------------- 655 (1300)
Q Consensus 630 DEaH~l~-d~-r----------g~---~le~iv~rl~~~~~--------------------------------------- 655 (1300)
||++.+. |+ + .. .+-....++.+.+.
T Consensus 249 DEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~ 328 (656)
T PRK12898 249 DEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAV 328 (656)
T ss_pred ecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccch
Confidence 9998652 11 1 01 00000000000000
Q ss_pred -------h---------------------------c-----------------------------------------cCC
Q 000756 656 -------T---------------------------T-----------------------------------------KEH 660 (1300)
Q Consensus 656 -------~---------------------------~-----------------------------------------~~~ 660 (1300)
+ + ..-
T Consensus 329 ~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y 408 (656)
T PRK12898 329 RREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRY 408 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhh
Confidence 0 0 001
Q ss_pred eeEEEEcccCCCh-HHHHHHHhccccCceEEecCCcccccce--eeEeeeecCchhHHHHHHHHHHHHHHHHH-hCCCeE
Q 000756 661 IRLVGLSATLPNY-EDVALFLRVNLEKGLFYFDNSYRPVPLS--QQYIGIQVKKPLQRFQLMNDLCYEKVVAV-AGKHQV 736 (1300)
Q Consensus 661 ~riV~LSATlpn~-~dva~~L~~~~~~~~~~f~~~~rpv~l~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~v 736 (1300)
.++.|||||++.. +++..+.+.++ ..-+..+|..-. +.++..+ ...+...+... +... ..+.++
T Consensus 409 ~kl~GmTGTa~~~~~El~~~y~l~v-----v~IPt~kp~~r~~~~~~v~~t---~~~K~~aL~~~----i~~~~~~~~pv 476 (656)
T PRK12898 409 LRLAGMTGTAREVAGELWSVYGLPV-----VRIPTNRPSQRRHLPDEVFLT---AAAKWAAVAAR----VRELHAQGRPV 476 (656)
T ss_pred HHHhcccCcChHHHHHHHHHHCCCe-----EEeCCCCCccceecCCEEEeC---HHHHHHHHHHH----HHHHHhcCCCE
Confidence 2678888887652 34555555432 223344444211 1122222 22233333332 2222 235789
Q ss_pred EEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHHHHHHH
Q 000756 737 LIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLF 816 (1300)
Q Consensus 737 LVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F 816 (1300)
||||+|++.++.++..|...+ ..+..+||.+...++..+. |
T Consensus 477 LIft~t~~~se~L~~~L~~~g-------------------------------------i~~~~Lhg~~~~rE~~ii~--~ 517 (656)
T PRK12898 477 LVGTRSVAASERLSALLREAG-------------------------------------LPHQVLNAKQDAEEAAIVA--R 517 (656)
T ss_pred EEEeCcHHHHHHHHHHHHHCC-------------------------------------CCEEEeeCCcHHHHHHHHH--H
Confidence 999999999999999998754 2356779987665555554 5
Q ss_pred hCCCccEEEeccccccccCCC---CcE-----EEEecceeccCCCCCcccCCHHHHHHhhhccCCCCCCCceEEEEEeCC
Q 000756 817 GDGHVQVLVSTATLAWGVNLP---AHT-----VIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (1300)
Q Consensus 817 ~~g~i~VLVaT~tla~GVdlP---av~-----vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d~~G~~iil~~~ 888 (1300)
+.+..+|+|||++++||+||| ++. +||+ |+.+. |...|.||+||+||.| .+|.++.+.+.
T Consensus 518 ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~----~d~P~------s~r~y~hr~GRTGRqG--~~G~s~~~is~ 585 (656)
T PRK12898 518 AGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVIL----TERHD------SARIDRQLAGRCGRQG--DPGSYEAILSL 585 (656)
T ss_pred cCCCCcEEEEccchhcccCcCCccchhhcCCCEEEE----cCCCC------CHHHHHHhcccccCCC--CCeEEEEEech
Confidence 555557999999999999999 665 8897 87766 7889999999999987 88999999886
Q ss_pred Cc
Q 000756 889 SE 890 (1300)
Q Consensus 889 ~~ 890 (1300)
.+
T Consensus 586 eD 587 (656)
T PRK12898 586 ED 587 (656)
T ss_pred hH
Confidence 54
No 92
>KOG4434 consensus Molecular chaperone SEC63, endoplasmic reticulum translocon component [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.6e-26 Score=249.85 Aligned_cols=275 Identities=25% Similarity=0.380 Sum_probs=223.3
Q ss_pred CCCCChHHHHHHhcCCccc-----ccCcCCchHHHHHHHHHhcCCC---CCCCC-C-CChhHHHHHHHHHHHhCcCCCCC
Q 000756 1021 KPTMGDIELCRLFSLSEEF-----KYVTVRQDEKMELAKLLDRVPI---PVKES-L-EEPSAKINVLLQAYISQLKLEGL 1090 (1300)
Q Consensus 1021 ~~~~~~~~il~ils~s~EF-----~~i~vR~~E~~eL~~L~~~~p~---pvk~~-~-~~~~~Kv~iLLQa~isr~~l~~~ 1090 (1300)
.|+|....++.+||.|.|| +.+.-|+.+..++-.|+..++- .-++. . ...+.|+.+||.|||||++|+.-
T Consensus 8 Tp~M~~kR~imVLags~EFdkqyNk~iqeR~tDn~evP~Lirqi~~vN~K~kE~PL~~pYslKaRvlLhahLsRmpl~~d 87 (520)
T KOG4434|consen 8 TPRMEIKRMIMVLAGSFEFDKQYNKEIQERETDNYEVPRLIRQIAGVNDKGKEQPLSQPYSLKARVLLHAHLSRMPLESD 87 (520)
T ss_pred CchhHHHHHHHHHhcccccChhhchhhhccCCcchHHHHHHHHcccccccccCCCccCchhHHHHHHHHHHHhcCCCChh
Confidence 5677778899999999999 4788999999999999887652 22221 2 23467999999999999999977
Q ss_pred cchhhHHHHHHhHHHHHHHHHHHHHHh----------C--cHHHHHHHHHHHHHHHhcccCCccccccccCCCHHHHHHH
Q 000756 1091 SLTSDMVFITQSAGRLLRALFEIVLKR----------G--WAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKL 1158 (1300)
Q Consensus 1091 ~L~~D~~~I~q~a~RLlral~eI~~~~----------g--~~~~a~~~l~L~k~i~q~~W~~~~pL~Q~p~i~~~~i~~l 1158 (1300)
+|..|..||+..++||++.|+.++... . -..+..+||.|++|++||+|...|||+|||||+++.++++
T Consensus 88 tLEeDqqfiikkcp~lvqEMVnc~~qLi~May~r~~~r~psiet~eNcmKlspM~vQgLwqfkSPLLQLPHitednL~~~ 167 (520)
T KOG4434|consen 88 TLEEDQQFIIKKCPRLVQEMVNCSQQLIVMAYSRHTRRIPSIETFENCMKLSPMFVQGLWQFKSPLLQLPHITEDNLQHL 167 (520)
T ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccccCccHHHHHHHHhccHHHHHHHHHhcChhhcCCccchHHHHHH
Confidence 999999999999999999998865321 1 1356789999999999999999999999999999999999
Q ss_pred HhCC-C-cchhhccCChHHHhhhhcCC-cc-hHHHHHHHhcCCceeEEEEEeee--------c-CceEEEEEEEecCCc-
Q 000756 1159 EKKD-F-AWERYYDLSPQELGELIRFP-KM-GRTLHKFVHQFPKLILAAHVQPI--------T-RTVLKVELTITPDFL- 1224 (1300)
Q Consensus 1159 e~~~-~-~~~~l~~l~~~el~~ll~~~-~~-g~~i~~~~~~~P~l~v~~~vqpi--------t-~~~l~v~l~i~~~~~- 1224 (1300)
.++- + ++++|..|.++++..+|++- .. -..+..++..||++.++...+-+ | +.+++|.|++++.-.
T Consensus 168 ~KKr~vks~qdla~lk~e~rr~lL~~LsdeeYe~vM~VLg~mP~~~~~ik~~V~dded~n~~TaG~vVTv~Vtl~R~~l~ 247 (520)
T KOG4434|consen 168 RKKRKVKSCQDLAVLKAETRRSLLRSLSDEEYEDVMVVLGMMPRLQIEIKTVVEDDEDKNELTAGCVVTVKVTLRRSRLI 247 (520)
T ss_pred hhhcccccHHHHhhcCHHHHHHHHHhcchHHHHHHHHHHccCcceEEEeeEEEecCCcccceeeeeEEEEEEEEEecccc
Confidence 7664 5 89999999999999999753 33 38899999999999998776543 3 557788887754200
Q ss_pred --------------------------------------------------------------------------------
Q 000756 1225 -------------------------------------------------------------------------------- 1224 (1300)
Q Consensus 1225 -------------------------------------------------------------------------------- 1224 (1300)
T Consensus 248 d~~e~~~~d~~k~paedG~~de~n~ea~g~~~eaaa~~~~~~vKK~kpw~K~Kpk~~kkpaq~Q~~qK~v~~~aas~at~ 327 (520)
T KOG4434|consen 248 DPQEAGLADQYKKPAEDGGDDENNLEASGAPEEAAATVEEEEVKKRKPWEKNKPKQKKKPAQGQGQQKFVKKNAASPATE 327 (520)
T ss_pred ChHhhhhhhhhhCchhhCCCcccchhccCChhhhccccchhhhhhcCchhhcCCCcccCccccchhhhhcccccCChhhh
Confidence
Q ss_pred --------------------------------------------------cCC-------------------CCcccccc
Q 000756 1225 --------------------------------------------------WDD-------------------KVHGYVEP 1235 (1300)
Q Consensus 1225 --------------------------------------------------w~~-------------------~~h~~~e~ 1235 (1300)
|.+ -||++++|
T Consensus 328 ka~eeea~~~~sD~E~e~~n~Ds~dees~asd~~~D~e~~~~~ddddd~EWe~lqa~~~kr~~lEtKs~~tHtVh~pyFP 407 (520)
T KOG4434|consen 328 KALEEEAKDKGSDSEEEETNRDSQDEESDASDRDSDREQDEKQDDDDDAEWEELQASIQKRALLETKSKITHTVHSPYFP 407 (520)
T ss_pred hhhHHHhhhcCcchhhhhhcccccccccccCccccchhhccccccccHHHHHHHHHHHHHHHhhhcccccceeeccCCCc
Confidence 100 08999888
Q ss_pred ------EEEEEEcCCCCeEEEEeEEE--eeeccccceEEEEEEEecCCCCCceEEEEEEecCccccceEEEC
Q 000756 1236 ------FWVIVEDNDGEYILHHEYFM--LKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGVLVCVWL 1299 (1300)
Q Consensus 1236 ------~wi~v~D~~~~~il~~~~~~--l~~~~~~~~~~l~F~vp~~~p~~~~~~v~~iSD~wlg~d~~~~i 1299 (1300)
||++|.|.++..+|...+.. |.. .++..+.|.+|. .||.++|+|++.||+|+|+|+..++
T Consensus 408 eEKqEwWW~Yi~drKsrtLlt~PyhV~tL~d---~eei~lkF~AP~-~pG~Ytytv~lrSDSYmg~dq~~~l 475 (520)
T KOG4434|consen 408 EEKQEWWWLYIADRKSRTLLTMPYHVCTLKD---TEEIELKFPAPG-KPGNYTYTVFLRSDSYMGLDQIKPL 475 (520)
T ss_pred chhhheeeeeeecccccceecchhhhhcccc---cceeEEeccCCC-CCCceEEEEEEecccccChhhccce
Confidence 99999999999888665542 333 478899999997 7999999999999999999998775
No 93
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.94 E-value=5.2e-25 Score=271.76 Aligned_cols=348 Identities=16% Similarity=0.174 Sum_probs=216.6
Q ss_pred CCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcc
Q 000756 496 LNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ 575 (1300)
Q Consensus 496 ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~ 575 (1300)
++|+|.|++..+..... .++.++||+|||++|.+|++..... +..++|++|++.||.|.++.+...+.
T Consensus 69 lrpydVQlig~l~l~~G-~Iaem~TGeGKTLta~Lpa~l~aL~-----------g~~V~VVTpn~yLA~Rdae~m~~l~~ 136 (762)
T TIGR03714 69 MFPYDVQVLGAIVLHQG-NIAEMKTGEGKTLTATMPLYLNALT-----------GKGAMLVTTNDYLAKRDAEEMGPVYE 136 (762)
T ss_pred CCccHHHHHHHHHhcCC-ceeEecCCcchHHHHHHHHHHHhhc-----------CCceEEeCCCHHHHHHHHHHHHHHHh
Confidence 45555555555443333 6999999999999999998665443 23599999999999999999999888
Q ss_pred cCCcEEEEEeCCCc---cc---hhhhccceEEEECcchH--HHHHhhc---CCCcccccccEEEEecccccc-cC-Chh-
Q 000756 576 MYDVKVRELSGDQT---LT---RQQIEETQIIVTTPEKW--DIITRKS---GDRTYTQLVKLLIIDEIHLLH-DN-RGP- 641 (1300)
Q Consensus 576 ~~gi~V~~ltGd~~---~~---~~~~~~~~IIV~TPekl--d~l~r~~---~~~~~l~~v~liIiDEaH~l~-d~-rg~- 641 (1300)
.+|++|+..+++.. .. .+...+++|+++||+.+ |.+..+. .....+..+.++|+||||.+. |+ |-|
T Consensus 137 ~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpl 216 (762)
T TIGR03714 137 WLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPL 216 (762)
T ss_pred hcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCe
Confidence 89999998877521 11 22345799999999997 5443331 112356789999999999873 21 211
Q ss_pred ----------HHHHHHHHHHHHHhhc-----cCCe---------------------------------------------
Q 000756 642 ----------VLESIVARTVRQIETT-----KEHI--------------------------------------------- 661 (1300)
Q Consensus 642 ----------~le~iv~rl~~~~~~~-----~~~~--------------------------------------------- 661 (1300)
.+-....++.+.+... ...-
T Consensus 217 iisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~ 296 (762)
T TIGR03714 217 VISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFK 296 (762)
T ss_pred eeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHh
Confidence 1111111221111100 0111
Q ss_pred ----------------------------------------------------------------eEEEEcccCCChHHHH
Q 000756 662 ----------------------------------------------------------------RLVGLSATLPNYEDVA 677 (1300)
Q Consensus 662 ----------------------------------------------------------------riV~LSATlpn~~dva 677 (1300)
++.|||.|... .-.
T Consensus 297 ~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~--~~~ 374 (762)
T TIGR03714 297 RNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKV--AEK 374 (762)
T ss_pred cCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChh--HHH
Confidence 23333333211 111
Q ss_pred HHHhccccCceEEecCCcccccceeeEeeeecCchhHHHHHHHHHHHHHHHH-HhCCCeEEEEEcChHHHHHHHHHHHHH
Q 000756 678 LFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKHQVLIFVHSRKETAKTARAIRDT 756 (1300)
Q Consensus 678 ~~L~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~vLVFv~sr~~~~~~a~~L~~~ 756 (1300)
+|...- +--+..-|..+|+......-.+- .....+..++.. .+.+ +..+.|+||||+|+..++.++..|...
T Consensus 375 Ef~~iY--~l~v~~IPt~kp~~r~d~~d~i~-~~~~~K~~ai~~----~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~ 447 (762)
T TIGR03714 375 EFIETY--SLSVVKIPTNKPIIRIDYPDKIY-ATLPEKLMATLE----DVKEYHETGQPVLLITGSVEMSEIYSELLLRE 447 (762)
T ss_pred HHHHHh--CCCEEEcCCCCCeeeeeCCCeEE-ECHHHHHHHHHH----HHHHHhhCCCCEEEEECcHHHHHHHHHHHHHC
Confidence 111110 00111222333332111100000 011122333322 2322 234789999999999999999988765
Q ss_pred hhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCC
Q 000756 757 ALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNL 836 (1300)
Q Consensus 757 ~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdl 836 (1300)
+. .+..+||.+...+|..+...++.| +|+|||++++||+|+
T Consensus 448 gi-------------------------------------~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI 488 (762)
T TIGR03714 448 GI-------------------------------------PHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDI 488 (762)
T ss_pred CC-------------------------------------CEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCC
Confidence 42 346679999999998888877777 799999999999999
Q ss_pred C---------CcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCCCCCCceEEEEEeCCCcHH----------HHHHh
Q 000756 837 P---------AHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR----------YYLSL 897 (1300)
Q Consensus 837 P---------av~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d~~G~~iil~~~~~~~----------~y~~l 897 (1300)
| ++.||+. |+++. ...+ .||+|||||.| ++|.++.+.+..+.- .+...
T Consensus 489 ~l~~~v~~~GGL~vIit----~~~ps------~rid-~qr~GRtGRqG--~~G~s~~~is~eD~l~~~~~~~~~~~~~~~ 555 (762)
T TIGR03714 489 KLGKGVAELGGLAVIGT----ERMEN------SRVD-LQLRGRSGRQG--DPGSSQFFVSLEDDLIKRWSPSWLKKYYKK 555 (762)
T ss_pred CCCccccccCCeEEEEe----cCCCC------cHHH-HHhhhcccCCC--CceeEEEEEccchhhhhhcchHHHHHHHHH
Confidence 9 8999997 88875 3444 99999999987 899999998865421 12222
Q ss_pred hc--C----CCCcccchhHhHHHHH
Q 000756 898 MN--Q----QLPIESQFVSKLADQL 916 (1300)
Q Consensus 898 l~--~----~lPiES~l~~~l~d~l 916 (1300)
+. + ..||+|.+..+..+..
T Consensus 556 ~~~~~~~~~~~~i~~~~~~~~i~~a 580 (762)
T TIGR03714 556 YSVKDSKLKPSALFKRRFRKIVEKA 580 (762)
T ss_pred cCCCcccccCcccccHHHHHHHHHH
Confidence 21 1 2678888876555443
No 94
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=1.9e-26 Score=281.31 Aligned_cols=344 Identities=20% Similarity=0.204 Sum_probs=216.6
Q ss_pred EEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcccCCcEEEEEeCCCccchhh
Q 000756 515 LLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ 594 (1300)
Q Consensus 515 Li~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~~gi~V~~ltGd~~~~~~~ 594 (1300)
|+.||||||||.+|+.++...+.. +.+++|++|+++|+.|++++|++.| |..+..++|+.+...+.
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~-----------g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~ 66 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL-----------GKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKL 66 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc-----------CCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHH
Confidence 578999999999998777666543 3479999999999999999999876 56788888876543321
Q ss_pred -------hccceEEEECcchHHHHHhhcCCCcccccccEEEEeccccccc--CChhHHHHH-HHHHHHHHhhccCCeeEE
Q 000756 595 -------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD--NRGPVLESI-VARTVRQIETTKEHIRLV 664 (1300)
Q Consensus 595 -------~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d--~rg~~le~i-v~rl~~~~~~~~~~~riV 664 (1300)
...++|+|+|+..+ . ..+.++++|||||+|.... ..+|.+..- ++.. .....+.++|
T Consensus 67 ~~~~~~~~g~~~IVVGTrsal---f------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~----ra~~~~~~vi 133 (505)
T TIGR00595 67 QAWRKVKNGEILVVIGTRSAL---F------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVY----RAKKFNCPVV 133 (505)
T ss_pred HHHHHHHcCCCCEEECChHHH---c------CcccCCCEEEEECCCccccccccCCCCcHHHHHHH----HHHhcCCCEE
Confidence 13578999998743 1 2467889999999998753 334443221 1111 1234578999
Q ss_pred EEcccCCChHHHHHHHhccccCceEEecCCc--ccccceeeEeeeecCchhHHHHHHHHHHHHHHHHHhC-CCeEEEEEc
Q 000756 665 GLSATLPNYEDVALFLRVNLEKGLFYFDNSY--RPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAG-KHQVLIFVH 741 (1300)
Q Consensus 665 ~LSATlpn~~dva~~L~~~~~~~~~~f~~~~--rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~vLVFv~ 741 (1300)
++||| |..+......... -.+......+ ++.| ...++...... ....+...+++.+.+... ++|+|||+|
T Consensus 134 l~SAT-Psles~~~~~~g~--~~~~~l~~r~~~~~~p-~v~vid~~~~~---~~~~ls~~l~~~i~~~l~~g~qvLvfln 206 (505)
T TIGR00595 134 LGSAT-PSLESYHNAKQKA--YRLLVLTRRVSGRKPP-EVKLIDMRKEP---RQSFLSPELITAIEQTLAAGEQSILFLN 206 (505)
T ss_pred EEeCC-CCHHHHHHHhcCC--eEEeechhhhcCCCCC-eEEEEeccccc---ccCCccHHHHHHHHHHHHcCCcEEEEEe
Confidence 99999 7665554443211 0111111111 1111 22233222111 001233445555655554 679999999
Q ss_pred ChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhh----------ccc--------------chhhhhhhc-CC
Q 000756 742 SRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTD----------MVK--------------SNDLKDLLP-YG 796 (1300)
Q Consensus 742 sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~----------~~~--------------~~~L~~ll~-~g 796 (1300)
+|..+-.+...=+.....+......+..+.......+.+|+ .|. ...|+..++ ..
T Consensus 207 rrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~ 286 (505)
T TIGR00595 207 RRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGAR 286 (505)
T ss_pred CCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCc
Confidence 99876554444333333333333333222111111122211 111 134555554 57
Q ss_pred eEEecCCCCHHHH--HHHHHHHhCCCccEEEeccccccccCCCCcEEEE--ecceeccCCCCCcccCCHHHHHHhhhccC
Q 000756 797 FAIHHAGMTRGDR--QLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVII--KGTQIYNPEKGAWTELSPLDIMQMLGRAG 872 (1300)
Q Consensus 797 v~~~Hagl~~~dR--~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI--~~t~~yd~~~g~~~~~S~~d~lQr~GRAG 872 (1300)
|...|+.++...+ +.+++.|++|.++|||+|+.+++|+|+|+++.|+ +.+.....+.-+..+-..+.|+|++||||
T Consensus 287 v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRag 366 (505)
T TIGR00595 287 IARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAG 366 (505)
T ss_pred EEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccC
Confidence 8899999987766 8899999999999999999999999999999764 43332222322223346788999999999
Q ss_pred CCCCCCceEEEEEeCCCcHHHH
Q 000756 873 RPQYDSYGEGIIITGHSELRYY 894 (1300)
Q Consensus 873 R~g~d~~G~~iil~~~~~~~~y 894 (1300)
|.+ ..|.+++.|...+...+
T Consensus 367 R~~--~~g~viiqt~~p~~~~~ 386 (505)
T TIGR00595 367 RAE--DPGQVIIQTYNPNHPAI 386 (505)
T ss_pred CCC--CCCEEEEEeCCCCCHHH
Confidence 965 78999998877664433
No 95
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=4.5e-25 Score=275.04 Aligned_cols=348 Identities=18% Similarity=0.157 Sum_probs=226.8
Q ss_pred CCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhc
Q 000756 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1300)
Q Consensus 495 ~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l 574 (1300)
.|+++|..+...+..+ .|+.+.||+|||++|.+|++..... +..+++++|++.||.|.+..+...+
T Consensus 78 ~p~~vQl~~~~~l~~G---~Iaem~TGeGKTL~a~lp~~l~al~-----------G~~v~VvTpt~~LA~qd~e~~~~l~ 143 (790)
T PRK09200 78 RPYDVQLIGALVLHEG---NIAEMQTGEGKTLTATMPLYLNALE-----------GKGVHLITVNDYLAKRDAEEMGQVY 143 (790)
T ss_pred CCchHHHHhHHHHcCC---ceeeecCCCcchHHHHHHHHHHHHc-----------CCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 7899999998876544 2999999999999999999855443 3469999999999999999999999
Q ss_pred ccCCcEEEEEeCCCc-cc-hhhhccceEEEECcchH--HHHHhhcC---CCcccccccEEEEecccccc-cC-Chh----
Q 000756 575 QMYDVKVRELSGDQT-LT-RQQIEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLLH-DN-RGP---- 641 (1300)
Q Consensus 575 ~~~gi~V~~ltGd~~-~~-~~~~~~~~IIV~TPekl--d~l~r~~~---~~~~l~~v~liIiDEaH~l~-d~-rg~---- 641 (1300)
..+|++|+.++|+.+ .. ++....++|+|+||+.+ |.+..+.. ....+..+.++||||||.+. |+ +-|
T Consensus 144 ~~lGl~v~~i~g~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliis 223 (790)
T PRK09200 144 EFLGLTVGLNFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIIS 223 (790)
T ss_pred hhcCCeEEEEeCCCCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeee
Confidence 999999999999887 32 33456799999999996 66655431 22356789999999999763 31 221
Q ss_pred -------HHHHHHHHHHHHHhhc-----cCCe------------------------------------------------
Q 000756 642 -------VLESIVARTVRQIETT-----KEHI------------------------------------------------ 661 (1300)
Q Consensus 642 -------~le~iv~rl~~~~~~~-----~~~~------------------------------------------------ 661 (1300)
.+-.+..++...+... ....
T Consensus 224 g~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~ 303 (790)
T PRK09200 224 GKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDV 303 (790)
T ss_pred CCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCC
Confidence 1111122222111100 0111
Q ss_pred -------------------------------------------------------------eEEEEcccCCChHHHHHHH
Q 000756 662 -------------------------------------------------------------RLVGLSATLPNYEDVALFL 680 (1300)
Q Consensus 662 -------------------------------------------------------------riV~LSATlpn~~dva~~L 680 (1300)
++.|||.|....+ .+|.
T Consensus 304 dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~--~e~~ 381 (790)
T PRK09200 304 DYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEE--KEFF 381 (790)
T ss_pred cEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHH--HHHH
Confidence 2233333321100 1111
Q ss_pred hccccCceEEecCCcccccceeeEeeeecCchhHHHHHHHHHHHHHHHH-HhCCCeEEEEEcChHHHHHHHHHHHHHhhc
Q 000756 681 RVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKHQVLIFVHSRKETAKTARAIRDTALE 759 (1300)
Q Consensus 681 ~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~ 759 (1300)
..- +--+..-|..+|+.....--.+. .....+...+... +.. +..+.|+||||+|++.+..++..|...+
T Consensus 382 ~~Y--~l~v~~IPt~kp~~r~d~~~~i~-~~~~~K~~al~~~----i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~g-- 452 (790)
T PRK09200 382 EVY--NMEVVQIPTNRPIIRIDYPDKVF-VTLDEKYKAVIEE----VKERHETGRPVLIGTGSIEQSETFSKLLDEAG-- 452 (790)
T ss_pred HHh--CCcEEECCCCCCcccccCCCeEE-cCHHHHHHHHHHH----HHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCC--
Confidence 110 00111123333332111100000 0111223333222 222 2347899999999999999999987654
Q ss_pred ccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCC---
Q 000756 760 NDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNL--- 836 (1300)
Q Consensus 760 ~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdl--- 836 (1300)
..+..+||.+...++..+...+..| +|+|||++++||+|+
T Consensus 453 -----------------------------------i~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~ 495 (790)
T PRK09200 453 -----------------------------------IPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLG 495 (790)
T ss_pred -----------------------------------CCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcc
Confidence 2356789999999998888888776 799999999999999
Q ss_pred CCcE-----EEEecceeccCCCCCcccCCHHHHHHhhhccCCCCCCCceEEEEEeCCCcHH----------HHHHhhcC-
Q 000756 837 PAHT-----VIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR----------YYLSLMNQ- 900 (1300)
Q Consensus 837 Pav~-----vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d~~G~~iil~~~~~~~----------~y~~ll~~- 900 (1300)
|++. +||+ |+.+. |...|.||+|||||.| .+|.++.+.+..+.- .+...+..
T Consensus 496 ~~V~~~GGL~VI~----~d~p~------s~r~y~qr~GRtGR~G--~~G~s~~~is~eD~l~~~~~~~~~~~~~~~~~~~ 563 (790)
T PRK09200 496 EGVHELGGLAVIG----TERME------SRRVDLQLRGRSGRQG--DPGSSQFFISLEDDLLKRFAPEELEKLKKKLKTD 563 (790)
T ss_pred cccccccCcEEEe----ccCCC------CHHHHHHhhccccCCC--CCeeEEEEEcchHHHHHhhccHHHHHHHHHcCCc
Confidence 7898 9998 88765 7899999999999987 899999988765421 12222221
Q ss_pred ----CCCcccchhHhHHHHH
Q 000756 901 ----QLPIESQFVSKLADQL 916 (1300)
Q Consensus 901 ----~lPiES~l~~~l~d~l 916 (1300)
..||++....++.+..
T Consensus 564 ~~~~~~~~~~~~~~~~~~~a 583 (790)
T PRK09200 564 AQRLTGLLFNRKVHKIVVKA 583 (790)
T ss_pred cccCCcccccHHHHHHHHHH
Confidence 4578877766555443
No 96
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=8.2e-27 Score=242.82 Aligned_cols=326 Identities=22% Similarity=0.317 Sum_probs=230.5
Q ss_pred CCCcccccCCCceEEeCCCCCCCCCCCCCccccCCCCChhhHhhc-CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCcc
Q 000756 446 PEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGK 524 (1300)
Q Consensus 446 p~~~~~~~~~~~eei~vP~~~~~~~~~~~~l~~i~~Lp~~~~~~f-~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGK 524 (1300)
|.|..+..++.|-.||-......- --|+.++... .||.+|..+|.+|||.++.+-+ +|..|..|.||
T Consensus 25 ~~~~~~d~kgsyv~ihssgfrdfl-----------lkpellraivdcgfehpsevqhecipqailgmd-vlcqaksgmgk 92 (387)
T KOG0329|consen 25 PAGPKKDKKGSYVSIHSSGFRDFL-----------LKPELLRAIVDCGFEHPSEVQHECIPQAILGMD-VLCQAKSGMGK 92 (387)
T ss_pred CCCccccccCcEEEEeccchhhhh-----------cCHHHHHHHHhccCCCchHhhhhhhhHHhhcch-hheecccCCCc
Confidence 445555555668777755432211 1245555554 8999999999999999998865 99999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcccC-CcEEEEEeCCCccchhh--h-ccceE
Q 000756 525 TNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQ--I-EETQI 600 (1300)
Q Consensus 525 T~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~~-gi~V~~ltGd~~~~~~~--~-~~~~I 600 (1300)
|.+|.++-|+.+..- + ....++++|.||+||-|+..++.++.+.+ +++|..+.|+..+.+.. + .-++|
T Consensus 93 tavfvl~tlqqiepv---~-----g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~Phi 164 (387)
T KOG0329|consen 93 TAVFVLATLQQIEPV---D-----GQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHI 164 (387)
T ss_pred eeeeehhhhhhcCCC---C-----CeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeE
Confidence 999999999988643 1 25679999999999999988876655443 78999999998876532 2 35799
Q ss_pred EEECcchHHHHHhhcCCCcccccccEEEEeccccccc---CChhHHHHHHHHHHHHHhhccCCeeEEEEcccCCC-hHHH
Q 000756 601 IVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD---NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDV 676 (1300)
Q Consensus 601 IV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d---~rg~~le~iv~rl~~~~~~~~~~~riV~LSATlpn-~~dv 676 (1300)
+|+||+++..+.|... ..+++++.+|+|||+.+.. .|+.+-| | ...++...|++.+|||+++ ..-+
T Consensus 165 vVgTPGrilALvr~k~--l~lk~vkhFvlDEcdkmle~lDMrRDvQE-i-------fr~tp~~KQvmmfsatlskeiRpv 234 (387)
T KOG0329|consen 165 VVGTPGRILALVRNRS--LNLKNVKHFVLDECDKMLEQLDMRRDVQE-I-------FRMTPHEKQVMMFSATLSKEIRPV 234 (387)
T ss_pred EEcCcHHHHHHHHhcc--CchhhcceeehhhHHHHHHHHHHHHHHHH-H-------hhcCcccceeeeeeeecchhhHHH
Confidence 9999999988888765 4688999999999998754 3333322 1 2346788999999999985 2233
Q ss_pred HHHHhccccCceEEecC-CcccccceeeEeeeecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHHH
Q 000756 677 ALFLRVNLEKGLFYFDN-SYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRD 755 (1300)
Q Consensus 677 a~~L~~~~~~~~~~f~~-~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~ 755 (1300)
+.-+..+|- .+|.-+. ...-..|+|+|+...+.....++. + ++....-+|++|||.|....
T Consensus 235 C~kFmQdPm-Ei~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~-------d-LLd~LeFNQVvIFvKsv~Rl--------- 296 (387)
T KOG0329|consen 235 CHKFMQDPM-EIFVDDEAKLTLHGLQQYYVKLKENEKNRKLN-------D-LLDVLEFNQVVIFVKSVQRL--------- 296 (387)
T ss_pred HHhhhcCch-hhhccchhhhhhhhHHHHHHhhhhhhhhhhhh-------h-hhhhhhhcceeEeeehhhhh---------
Confidence 332322321 1221111 112235667777665544332222 2 22334467999999775320
Q ss_pred HhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccC
Q 000756 756 TALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVN 835 (1300)
Q Consensus 756 ~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVd 835 (1300)
+ | ..+ ||||+.+.+|+|
T Consensus 297 -------------------------------------------------~----------f---~kr-~vat~lfgrgmd 313 (387)
T KOG0329|consen 297 -------------------------------------------------S----------F---QKR-LVATDLFGRGMD 313 (387)
T ss_pred -------------------------------------------------h----------h---hhh-hHHhhhhccccC
Confidence 0 2 123 899999999999
Q ss_pred CCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCCCCCCceEEEEEeCCCcHHHH
Q 000756 836 LPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYY 894 (1300)
Q Consensus 836 lPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d~~G~~iil~~~~~~~~y 894 (1300)
+-.+++|++ ||.+. +...|+||+|||||-| +.|-+|.+.+..+....
T Consensus 314 iervNi~~N----Ydmp~------~~DtYlHrv~rAgrfG--tkglaitfvs~e~da~i 360 (387)
T KOG0329|consen 314 IERVNIVFN----YDMPE------DSDTYLHRVARAGRFG--TKGLAITFVSDENDAKI 360 (387)
T ss_pred cccceeeec----cCCCC------CchHHHHHhhhhhccc--cccceeehhcchhhHHH
Confidence 999999999 88776 6788999999999966 99999999887665443
No 97
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.94 E-value=1.6e-25 Score=243.55 Aligned_cols=325 Identities=20% Similarity=0.296 Sum_probs=234.7
Q ss_pred hhHhhcCCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHH
Q 000756 485 WAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564 (1300)
Q Consensus 485 ~~~~~f~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~ 564 (1300)
.++..| ....|+|.|..+++..+.+.+ +++..|||.||++||.||+|-. ..-+++|+|..+|+.
T Consensus 85 ilk~~f-~lekfrplq~~ain~~ma~ed-~~lil~tgggkslcyqlpal~a--------------dg~alvi~plislme 148 (695)
T KOG0353|consen 85 ILKEQF-HLEKFRPLQLAAINATMAGED-AFLILPTGGGKSLCYQLPALCA--------------DGFALVICPLISLME 148 (695)
T ss_pred HHHHHh-hHHhcChhHHHHhhhhhccCc-eEEEEeCCCccchhhhhhHHhc--------------CCceEeechhHHHHH
Confidence 344455 367899999999999988755 8888999999999999998753 224899999999999
Q ss_pred HHHHHHhhhcccCCcEEEEEeCCCccchhh---------hccceEEEECcchHH---HHHhhcCCCcccccccEEEEecc
Q 000756 565 EVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---------IEETQIIVTTPEKWD---IITRKSGDRTYTQLVKLLIIDEI 632 (1300)
Q Consensus 565 q~~~~~~~~l~~~gi~V~~ltGd~~~~~~~---------~~~~~IIV~TPekld---~l~r~~~~~~~l~~v~liIiDEa 632 (1300)
.+.-.++. +|+....+...++..... -.+..+|+.|||++. .+..+.........+.+|-|||+
T Consensus 149 dqil~lkq----lgi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidev 224 (695)
T KOG0353|consen 149 DQILQLKQ----LGIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEV 224 (695)
T ss_pred HHHHHHHH----hCcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecce
Confidence 88777665 367666665544432211 135679999999972 22222111123455789999999
Q ss_pred ccccc---CChhHHHHHHHHHHHHHhhccCCeeEEEEcccCCC--hHHHHHHHhccccCceEEecCCcccccceeeEeee
Q 000756 633 HLLHD---NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN--YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGI 707 (1300)
Q Consensus 633 H~l~d---~rg~~le~iv~rl~~~~~~~~~~~riV~LSATlpn--~~dva~~L~~~~~~~~~~f~~~~rpv~l~~~~~~~ 707 (1300)
|+-.. +++|.+..+ .-+ ....+...++||+||..| ..|+...|... ..|.|...|....|...+..-
T Consensus 225 hccsqwghdfr~dy~~l-~il----krqf~~~~iigltatatn~vl~d~k~il~ie---~~~tf~a~fnr~nl~yev~qk 296 (695)
T KOG0353|consen 225 HCCSQWGHDFRPDYKAL-GIL----KRQFKGAPIIGLTATATNHVLDDAKDILCIE---AAFTFRAGFNRPNLKYEVRQK 296 (695)
T ss_pred eehhhhCcccCcchHHH-HHH----HHhCCCCceeeeehhhhcchhhHHHHHHhHH---hhheeecccCCCCceeEeeeC
Confidence 98754 566666543 112 223568899999999877 45777777754 367788777665665444332
Q ss_pred ecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccch
Q 000756 708 QVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSN 787 (1300)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~ 787 (1300)
+... ..-.. -+...+.....+...||||-|+++|++++..|...+..
T Consensus 297 p~n~-dd~~e----di~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~---------------------------- 343 (695)
T KOG0353|consen 297 PGNE-DDCIE----DIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIH---------------------------- 343 (695)
T ss_pred CCCh-HHHHH----HHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCcc----------------------------
Confidence 2221 11111 12222333344678899999999999999999887643
Q ss_pred hhhhhhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHH-
Q 000756 788 DLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQ- 866 (1300)
Q Consensus 788 ~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQ- 866 (1300)
.+.+|+.|.+.||.-+-+.+..|+|+|+|||-.+++|||-|+++.||+ ...++ |+..|.|
T Consensus 344 ---------a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvih----hsl~k------sienyyqa 404 (695)
T KOG0353|consen 344 ---------AGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIH----HSLPK------SIENYYQA 404 (695)
T ss_pred ---------ccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEe----cccch------hHHHHHHH
Confidence 356799999999999999999999999999999999999999999998 55555 8888988
Q ss_pred ------------------------------------------hhhccCCCCCCCceEEEEEeCCCcH
Q 000756 867 ------------------------------------------MLGRAGRPQYDSYGEGIIITGHSEL 891 (1300)
Q Consensus 867 ------------------------------------------r~GRAGR~g~d~~G~~iil~~~~~~ 891 (1300)
..|||||.+ -+..||+++.-.+.
T Consensus 405 sarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~--~~a~cilyy~~~di 469 (695)
T KOG0353|consen 405 SARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDD--MKADCILYYGFADI 469 (695)
T ss_pred HHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCC--CcccEEEEechHHH
Confidence 789999975 67889888865543
No 98
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.93 E-value=1.7e-24 Score=284.37 Aligned_cols=285 Identities=19% Similarity=0.205 Sum_probs=186.2
Q ss_pred CCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhh
Q 000756 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (1300)
Q Consensus 493 ~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~ 572 (1300)
...|+++|..+++.++.+ .+++++||||+|||. |.+++...+... +.+++||+||++||.|+++.+.+
T Consensus 76 g~~p~~iQ~~~i~~il~G-~d~vi~ApTGsGKT~-f~l~~~~~l~~~----------g~~vLIL~PTreLa~Qi~~~l~~ 143 (1171)
T TIGR01054 76 GSEPWSIQKMWAKRVLRG-DSFAIIAPTGVGKTT-FGLAMSLFLAKK----------GKRCYIILPTTLLVIQVAEKISS 143 (1171)
T ss_pred CCCCcHHHHHHHHHHhCC-CeEEEECCCCCCHHH-HHHHHHHHHHhc----------CCeEEEEeCHHHHHHHHHHHHHH
Confidence 347999999999999887 579999999999997 555555554331 45899999999999999999999
Q ss_pred hcccCCcEE---EEEeCCCccchhh-----h--ccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccC----
Q 000756 573 RLQMYDVKV---RELSGDQTLTRQQ-----I--EETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDN---- 638 (1300)
Q Consensus 573 ~l~~~gi~V---~~ltGd~~~~~~~-----~--~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~---- 638 (1300)
.+...|+.+ +.++|+.+...+. + .+++|+|+||+++........ ..++++|+||||.+.+.
T Consensus 144 l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~-----~~~~~iVvDEaD~~L~~~k~v 218 (1171)
T TIGR01054 144 LAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG-----PKFDFIFVDDVDALLKASKNV 218 (1171)
T ss_pred HHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc-----CCCCEEEEeChHhhhhccccH
Confidence 887666553 3577887654321 1 348999999998633333221 17899999999998762
Q ss_pred --------Chh-HHHHHHHHH---------------HHHHhhccCCee--EEEEcccCCChHHHH-HHHhccccCceEEe
Q 000756 639 --------RGP-VLESIVART---------------VRQIETTKEHIR--LVGLSATLPNYEDVA-LFLRVNLEKGLFYF 691 (1300)
Q Consensus 639 --------rg~-~le~iv~rl---------------~~~~~~~~~~~r--iV~LSATlpn~~dva-~~L~~~~~~~~~~f 691 (1300)
+.+ .++.++..+ ...+...+...| ++.+|||..+. .+. .+++. + -+ +..
T Consensus 219 d~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~-~~~~~l~r~-l-l~-~~v 294 (1171)
T TIGR01054 219 DKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPR-GKRAKLFRE-L-LG-FEV 294 (1171)
T ss_pred HHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCcc-ccHHHHccc-c-cc-eEe
Confidence 111 233332211 111112223333 67789994322 222 22221 1 01 111
Q ss_pred cCC-cccccceeeEeeeecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEEcCh---HHHHHHHHHHHHHhhccccccccc
Q 000756 692 DNS-YRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSR---KETAKTARAIRDTALENDTLGRFL 767 (1300)
Q Consensus 692 ~~~-~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr---~~~~~~a~~L~~~~~~~~~l~~~l 767 (1300)
... ...-.+.+.++.... ....+ .+.+ ... +.++||||+++ +.|..++..|...+
T Consensus 295 ~~~~~~~r~I~~~~~~~~~-----~~~~L----~~ll-~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~g---------- 353 (1171)
T TIGR01054 295 GGGSDTLRNVVDVYVEDED-----LKETL----LEIV-KKL-GTGGIVYVSIDYGKEKAEEIAEFLENHG---------- 353 (1171)
T ss_pred cCccccccceEEEEEeccc-----HHHHH----HHHH-HHc-CCCEEEEEeccccHHHHHHHHHHHHhCC----------
Confidence 111 111123344432221 01111 1222 222 46899999999 89999998887643
Q ss_pred ccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEec----cccccccCCCC-cEEE
Q 000756 768 KEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVST----ATLAWGVNLPA-HTVI 842 (1300)
Q Consensus 768 ~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT----~tla~GVdlPa-v~vV 842 (1300)
+.++.+||+|+. .+++.|++|.++||||| ++++||+|+|+ +++|
T Consensus 354 ---------------------------~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~v 402 (1171)
T TIGR01054 354 ---------------------------VKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYA 402 (1171)
T ss_pred ---------------------------ceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEE
Confidence 346788999973 68899999999999994 89999999999 8999
Q ss_pred EecceeccCCCC
Q 000756 843 IKGTQIYNPEKG 854 (1300)
Q Consensus 843 I~~t~~yd~~~g 854 (1300)
|+ |+.|+.
T Consensus 403 I~----~~~P~~ 410 (1171)
T TIGR01054 403 VF----LGVPKF 410 (1171)
T ss_pred EE----ECCCCE
Confidence 98 666654
No 99
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.93 E-value=7.9e-24 Score=259.66 Aligned_cols=347 Identities=17% Similarity=0.153 Sum_probs=221.3
Q ss_pred CCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHH-HHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhh
Q 000756 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTIL-QQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (1300)
Q Consensus 495 ~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il-~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~ 573 (1300)
.|+++|..+...+..+ .+..++||+|||++|.+|++ +.+. +..+.+++|++.||.|.++.+...
T Consensus 56 ~p~~vQlig~~~l~~G---~Iaem~TGeGKTLva~lpa~l~aL~------------G~~V~VvTpt~~LA~qdae~~~~l 120 (745)
T TIGR00963 56 RPFDVQLIGGIALHKG---KIAEMKTGEGKTLTATLPAYLNALT------------GKGVHVVTVNDYLAQRDAEWMGQV 120 (745)
T ss_pred CccchHHhhhhhhcCC---ceeeecCCCccHHHHHHHHHHHHHh------------CCCEEEEcCCHHHHHHHHHHHHHH
Confidence 6788888888765543 38999999999999999995 4543 224899999999999999999999
Q ss_pred cccCCcEEEEEeCCCccchh-hhccceEEEECcchH--HHHHhhc---CCCcccccccEEEEeccccccc--CChhHHH-
Q 000756 574 LQMYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKW--DIITRKS---GDRTYTQLVKLLIIDEIHLLHD--NRGPVLE- 644 (1300)
Q Consensus 574 l~~~gi~V~~ltGd~~~~~~-~~~~~~IIV~TPekl--d~l~r~~---~~~~~l~~v~liIiDEaH~l~d--~rg~~le- 644 (1300)
+..+|++|+.++|+.+...+ ....++|+|+||.++ |.+..+. .+...++.++++||||+|.+.- .|.|.+-
T Consensus 121 ~~~LGLsv~~i~g~~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiis 200 (745)
T TIGR00963 121 YRFLGLSVGLILSGMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIIS 200 (745)
T ss_pred hccCCCeEEEEeCCCCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhc
Confidence 99999999999998775443 234689999999986 6655442 1224567899999999998742 2222111
Q ss_pred ----------HHHHHHHHHHhh-----ccCCe------------------------------------------------
Q 000756 645 ----------SIVARTVRQIET-----TKEHI------------------------------------------------ 661 (1300)
Q Consensus 645 ----------~iv~rl~~~~~~-----~~~~~------------------------------------------------ 661 (1300)
.....+.+.+.. ....-
T Consensus 201 g~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~ 280 (745)
T TIGR00963 201 GPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDV 280 (745)
T ss_pred CCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCC
Confidence 111111111110 00111
Q ss_pred -------------------------------------------------------------eEEEEcccCCChHHHHHHH
Q 000756 662 -------------------------------------------------------------RLVGLSATLPNYEDVALFL 680 (1300)
Q Consensus 662 -------------------------------------------------------------riV~LSATlpn~~dva~~L 680 (1300)
++.|||.|... .-.+|.
T Consensus 281 dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~t--e~~E~~ 358 (745)
T TIGR00963 281 DYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKT--EEEEFE 358 (745)
T ss_pred cEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHH--HHHHHH
Confidence 22233333211 001111
Q ss_pred hccccCceEEecCCcccccceeeEeeeecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhcc
Q 000756 681 RVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALEN 760 (1300)
Q Consensus 681 ~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~ 760 (1300)
..- +--+..-|..+|+.-....-.+ ......++.++.+ .....+..+.|+||||+|...++.++..|...+..
T Consensus 359 ~iY--~l~vv~IPtnkp~~R~d~~d~i-~~t~~~k~~ai~~---~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~- 431 (745)
T TIGR00963 359 KIY--NLEVVVVPTNRPVIRKDLSDLV-YKTEEEKWKAVVD---EIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIP- 431 (745)
T ss_pred HHh--CCCEEEeCCCCCeeeeeCCCeE-EcCHHHHHHHHHH---HHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCC-
Confidence 100 0001112222332111100000 0111122222222 22222344889999999999999999999876432
Q ss_pred cccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCC--
Q 000756 761 DTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPA-- 838 (1300)
Q Consensus 761 ~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPa-- 838 (1300)
...+||+ +.+|+..+..|+.+...|+|||++++||+||+.
T Consensus 432 ------------------------------------~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~ 473 (745)
T TIGR00963 432 ------------------------------------HNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEE 473 (745)
T ss_pred ------------------------------------eEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccc
Confidence 3556888 778999999999999999999999999999998
Q ss_pred -----cEEEEecceeccCCCCCcccCCHHHHHHhhhccCCCCCCCceEEEEEeCCCcHH-------HHHHh---h--cCC
Q 000756 839 -----HTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR-------YYLSL---M--NQQ 901 (1300)
Q Consensus 839 -----v~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d~~G~~iil~~~~~~~-------~y~~l---l--~~~ 901 (1300)
..+||. |+.+. |...+.|++||+||.| .+|.+..+.+..+.- ...++ + ...
T Consensus 474 V~~~GGl~VI~----t~~p~------s~ri~~q~~GRtGRqG--~~G~s~~~ls~eD~l~~~~~~~~~~~~~~~~~~~~~ 541 (745)
T TIGR00963 474 VKELGGLYVIG----TERHE------SRRIDNQLRGRSGRQG--DPGSSRFFLSLEDNLMRIFGGDRLEGLMRRLGLEDD 541 (745)
T ss_pred hhhcCCcEEEe----cCCCC------cHHHHHHHhccccCCC--CCcceEEEEeccHHHHHhhhhHHHHHHHHHcCCCCC
Confidence 558887 66555 8899999999999988 889999888765421 11112 1 134
Q ss_pred CCcccchhHhHHHH
Q 000756 902 LPIESQFVSKLADQ 915 (1300)
Q Consensus 902 lPiES~l~~~l~d~ 915 (1300)
.||++.......+.
T Consensus 542 ~~i~~~~~~~~~~~ 555 (745)
T TIGR00963 542 EPIESKMVTRALES 555 (745)
T ss_pred ceeecHHHHHHHHH
Confidence 57777766554444
No 100
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.93 E-value=2.4e-24 Score=256.80 Aligned_cols=316 Identities=24% Similarity=0.340 Sum_probs=225.3
Q ss_pred CCCHHHHHHHHHHHcC---C--CeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHH
Q 000756 495 QLNRVQSRVYKSALSS---A--DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (1300)
Q Consensus 495 ~ln~iQ~~~i~~~l~~---~--~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~ 569 (1300)
+||.-|.+++..+... . -|-|+.|.-|||||.+|+++++..+.. ++.+...+||--||.|-+..
T Consensus 262 ~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~-----------G~Q~ALMAPTEILA~QH~~~ 330 (677)
T COG1200 262 KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA-----------GYQAALMAPTEILAEQHYES 330 (677)
T ss_pred CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc-----------CCeeEEeccHHHHHHHHHHH
Confidence 7899999999987643 2 256999999999999999999999875 46799999999999999999
Q ss_pred HhhhcccCCcEEEEEeCCCccchhh-------hccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccCChhH
Q 000756 570 LSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPV 642 (1300)
Q Consensus 570 ~~~~l~~~gi~V~~ltGd~~~~~~~-------~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~ 642 (1300)
+.++|.++|++|..+||...-..+. ....+|+|+|-. |.. +.-.++++.|+|+||=|..+- .
T Consensus 331 ~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHA----LiQ---d~V~F~~LgLVIiDEQHRFGV----~ 399 (677)
T COG1200 331 LRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHA----LIQ---DKVEFHNLGLVIIDEQHRFGV----H 399 (677)
T ss_pred HHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcch----hhh---cceeecceeEEEEeccccccH----H
Confidence 9999999999999999987654332 246899999975 332 223577899999999999652 1
Q ss_pred HHHHHHHHHHHHhhccC-CeeEEEEcccCCChHHHHHHHhccccCceEEecCCcccccceeeEeeeecCchhHHHHHHHH
Q 000756 643 LESIVARTVRQIETTKE-HIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMND 721 (1300)
Q Consensus 643 le~iv~rl~~~~~~~~~-~~riV~LSATlpn~~dva~~L~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~ 721 (1300)
= | ..+..... .+-++.|||| |-+.-++--.-.+....+..--+..| .|+....+.. .. ..
T Consensus 400 Q-----R--~~L~~KG~~~Ph~LvMTAT-PIPRTLAlt~fgDldvS~IdElP~GR-kpI~T~~i~~--~~----~~---- 460 (677)
T COG1200 400 Q-----R--LALREKGEQNPHVLVMTAT-PIPRTLALTAFGDLDVSIIDELPPGR-KPITTVVIPH--ER----RP---- 460 (677)
T ss_pred H-----H--HHHHHhCCCCCcEEEEeCC-CchHHHHHHHhccccchhhccCCCCC-CceEEEEecc--cc----HH----
Confidence 1 1 11223344 6889999999 55666553333222111111111111 2333333322 11 11
Q ss_pred HHHHHHHH-HhCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhh-cCCeEE
Q 000756 722 LCYEKVVA-VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL-PYGFAI 799 (1300)
Q Consensus 722 ~~~~~i~~-~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll-~~gv~~ 799 (1300)
.+++.+.. ...++|+.|.||-..+.+++...-.... ...|+..+ .+.|+.
T Consensus 461 ~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~----------------------------~~~L~~~~~~~~vgL 512 (677)
T COG1200 461 EVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEEL----------------------------YEELKSFLPELKVGL 512 (677)
T ss_pred HHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHH----------------------------HHHHHHHcccceeEE
Confidence 12333332 2348899999998877763321000000 01122222 255999
Q ss_pred ecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCCCCCCc
Q 000756 800 HHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSY 879 (1300)
Q Consensus 800 ~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d~~ 879 (1300)
.||.|+..+++.|++.|++|+++|||||.+.+.|||+|+.++.|- +|+++ +..+.+-|-.||+||.+ ..
T Consensus 513 ~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVI----e~AER-----FGLaQLHQLRGRVGRG~--~q 581 (677)
T COG1200 513 VHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVI----ENAER-----FGLAQLHQLRGRVGRGD--LQ 581 (677)
T ss_pred EecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEE----echhh-----hhHHHHHHhccccCCCC--cc
Confidence 999999999999999999999999999999999999999999773 88876 48899999999999975 88
Q ss_pred eEEEEEeCCCc
Q 000756 880 GEGIIITGHSE 890 (1300)
Q Consensus 880 G~~iil~~~~~ 890 (1300)
+.|++++.+..
T Consensus 582 SyC~Ll~~~~~ 592 (677)
T COG1200 582 SYCVLLYKPPL 592 (677)
T ss_pred eEEEEEeCCCC
Confidence 99999998765
No 101
>PRK09694 helicase Cas3; Provisional
Probab=99.93 E-value=4.8e-24 Score=270.65 Aligned_cols=314 Identities=19% Similarity=0.198 Sum_probs=193.9
Q ss_pred CCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhh
Q 000756 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (1300)
Q Consensus 493 ~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~ 572 (1300)
...|+|+|..+... -.+...++|.||||+|||.++++++.+.+... ...+++|..||++++++++.++.+
T Consensus 284 ~~~p~p~Q~~~~~~-~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~---------~~~gi~~aLPT~Atan~m~~Rl~~ 353 (878)
T PRK09694 284 GYQPRQLQTLVDAL-PLQPGLTIIEAPTGSGKTEAALAYAWRLIDQG---------LADSIIFALPTQATANAMLSRLEA 353 (878)
T ss_pred CCCChHHHHHHHhh-ccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhC---------CCCeEEEECcHHHHHHHHHHHHHH
Confidence 45899999988543 23456799999999999999988877655432 134799999999999999999886
Q ss_pred hcccC--CcEEEEEeCCCccch-----------------------hhh-------ccceEEEECcchH-HHHHhhcCCCc
Q 000756 573 RLQMY--DVKVRELSGDQTLTR-----------------------QQI-------EETQIIVTTPEKW-DIITRKSGDRT 619 (1300)
Q Consensus 573 ~l~~~--gi~V~~ltGd~~~~~-----------------------~~~-------~~~~IIV~TPekl-d~l~r~~~~~~ 619 (1300)
.+... ...|..++|....+. +.+ --++|+|||+.++ ..++.... .
T Consensus 354 ~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh--~ 431 (878)
T PRK09694 354 LASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKH--R 431 (878)
T ss_pred HHHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccch--H
Confidence 44321 346777777654221 001 1268999999985 23332111 1
Q ss_pred ccccc----cEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEEcccCCChH--HHHHHHhcc-c---cC--c
Q 000756 620 YTQLV----KLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYE--DVALFLRVN-L---EK--G 687 (1300)
Q Consensus 620 ~l~~v----~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LSATlpn~~--dva~~L~~~-~---~~--~ 687 (1300)
+++.+ ++|||||+|.+.. .+..++.++++.... ...++|+||||+|... .+..-++.. + .. .
T Consensus 432 ~lR~~~La~svvIiDEVHAyD~----ym~~lL~~~L~~l~~--~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YP 505 (878)
T PRK09694 432 FIRGFGLGRSVLIVDEVHAYDA----YMYGLLEAVLKAQAQ--AGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYP 505 (878)
T ss_pred HHHHHhhccCeEEEechhhCCH----HHHHHHHHHHHHHHh--cCCcEEEEeCCCCHHHHHHHHHHhccccccccccccc
Confidence 22222 5899999999743 233344444443332 3567999999998621 122111111 0 00 0
Q ss_pred e---------EEecCCcc----cccceeeEeeeecCchhHHHHHHHHHHHHHHHHH-hCCCeEEEEEcChHHHHHHHHHH
Q 000756 688 L---------FYFDNSYR----PVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAV-AGKHQVLIFVHSRKETAKTARAI 753 (1300)
Q Consensus 688 ~---------~~f~~~~r----pv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~vLVFv~sr~~~~~~a~~L 753 (1300)
+ ..|..... +.+....+........ .-...+.+.+.+. ..++++||||||++.|..+++.|
T Consensus 506 lvt~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~-----~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L 580 (878)
T PRK09694 506 LITWRGVNGAQRFDLSAHPEQLPARFTIQLEPICLADM-----LPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRL 580 (878)
T ss_pred cccccccccceeeeccccccccCcceEEEEEeeccccc-----cCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHH
Confidence 0 00100000 1111111100000000 0011223333333 34789999999999999999998
Q ss_pred HHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHH----HHHHHH-hCCC---ccEEE
Q 000756 754 RDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQ----LVEDLF-GDGH---VQVLV 825 (1300)
Q Consensus 754 ~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~----~ve~~F-~~g~---i~VLV 825 (1300)
++.... ...+..+||+++..+|. .+++.| ++|. .+|||
T Consensus 581 ~~~~~~----------------------------------~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILV 626 (878)
T PRK09694 581 KELNNT----------------------------------QVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILV 626 (878)
T ss_pred HhhCCC----------------------------------CceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEE
Confidence 754211 02478899999999995 456677 6666 47999
Q ss_pred eccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCCCC
Q 000756 826 STATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQY 876 (1300)
Q Consensus 826 aT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~ 876 (1300)
||.++++|||++ .+++|. .. .++..++||+||+||.+.
T Consensus 627 aTQViE~GLDId-~DvlIt----dl--------aPidsLiQRaGR~~R~~~ 664 (878)
T PRK09694 627 ATQVVEQSLDLD-FDWLIT----QL--------CPVDLLFQRLGRLHRHHR 664 (878)
T ss_pred ECcchhheeecC-CCeEEE----CC--------CCHHHHHHHHhccCCCCC
Confidence 999999999995 577774 21 256789999999999874
No 102
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.91 E-value=6.8e-23 Score=247.41 Aligned_cols=297 Identities=21% Similarity=0.266 Sum_probs=193.6
Q ss_pred CCCCCHHHHHHHHHHHcC---CCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHH
Q 000756 493 MTQLNRVQSRVYKSALSS---ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (1300)
Q Consensus 493 ~~~ln~iQ~~~i~~~l~~---~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~ 569 (1300)
...|+++|.+++.++.+. +...++++|||+|||.+++.++.... .+++||+|+++|+.|+.+.
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~--------------~~~Lvlv~~~~L~~Qw~~~ 99 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELK--------------RSTLVLVPTKELLDQWAEA 99 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhc--------------CCEEEEECcHHHHHHHHHH
Confidence 347999999999999885 56799999999999999987765431 1399999999999999988
Q ss_pred HhhhcccCCcEEEEEeCCCccchhhhccceEEEECcchHHHHHhh-cCCCcccccccEEEEecccccccCChhHHHHHHH
Q 000756 570 LSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRK-SGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVA 648 (1300)
Q Consensus 570 ~~~~l~~~gi~V~~ltGd~~~~~~~~~~~~IIV~TPekld~l~r~-~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~ 648 (1300)
+.+.+.. +..++.+.|+...... ..|.|+|.. .+.+. .......+.+++||+||||++.... +..+..
T Consensus 100 ~~~~~~~-~~~~g~~~~~~~~~~~----~~i~vat~q---tl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~---~~~~~~ 168 (442)
T COG1061 100 LKKFLLL-NDEIGIYGGGEKELEP----AKVTVATVQ---TLARRQLLDEFLGNEFGLIIFDEVHHLPAPS---YRRILE 168 (442)
T ss_pred HHHhcCC-ccccceecCceeccCC----CcEEEEEhH---HHhhhhhhhhhcccccCEEEEEccccCCcHH---HHHHHH
Confidence 7765542 2346666665443221 569999987 45553 1111233368999999999987432 222222
Q ss_pred HHHHHHhhccCCee-EEEEcccCCCh-----HHHHHHHhccccCceEEecCC-----cccccceeeEeeee--cCc----
Q 000756 649 RTVRQIETTKEHIR-LVGLSATLPNY-----EDVALFLRVNLEKGLFYFDNS-----YRPVPLSQQYIGIQ--VKK---- 711 (1300)
Q Consensus 649 rl~~~~~~~~~~~r-iV~LSATlpn~-----~dva~~L~~~~~~~~~~f~~~-----~rpv~l~~~~~~~~--~~~---- 711 (1300)
.. ...+ ++|||||++-. .++...++. -++.+... .--.|.....+.+. ...
T Consensus 169 ~~--------~~~~~~LGLTATp~R~D~~~~~~l~~~~g~----~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~ 236 (442)
T COG1061 169 LL--------SAAYPRLGLTATPEREDGGRIGDLFDLIGP----IVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREY 236 (442)
T ss_pred hh--------hcccceeeeccCceeecCCchhHHHHhcCC----eEeecCHHHHHhCCCccceEEEEEEeccchHHHHHh
Confidence 21 2233 89999996521 123333320 01111100 00112211111111 000
Q ss_pred --hhHHHH-------------------HHHH----HHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccc
Q 000756 712 --PLQRFQ-------------------LMND----LCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRF 766 (1300)
Q Consensus 712 --~~~~~~-------------------~~~~----~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~ 766 (1300)
...+.. ..+. .+...+..+..+.+++||+.+...+..++..+...+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~--------- 307 (442)
T COG1061 237 AKESARFRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPG--------- 307 (442)
T ss_pred hhhhhhhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCC---------
Confidence 000000 0000 111111111136699999999999999888765321
Q ss_pred cccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecc
Q 000756 767 LKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGT 846 (1300)
Q Consensus 767 l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t 846 (1300)
++....+..+..+|..+.+.|+.|.+++||++.++..|+|+|++.++|.
T Consensus 308 -----------------------------~~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~-- 356 (442)
T COG1061 308 -----------------------------IVEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLII-- 356 (442)
T ss_pred -----------------------------ceEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEE--
Confidence 1456789999999999999999999999999999999999999999996
Q ss_pred eeccCCCCCcccCCHHHHHHhhhccCCC
Q 000756 847 QIYNPEKGAWTELSPLDIMQMLGRAGRP 874 (1300)
Q Consensus 847 ~~yd~~~g~~~~~S~~d~lQr~GRAGR~ 874 (1300)
-.|.. |...|.||+||.-|+
T Consensus 357 --~~~t~------S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 357 --LRPTG------SRRLFIQRLGRGLRP 376 (442)
T ss_pred --eCCCC------cHHHHHHHhhhhccC
Confidence 45533 899999999999996
No 103
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.91 E-value=3.3e-22 Score=217.60 Aligned_cols=312 Identities=22% Similarity=0.289 Sum_probs=213.5
Q ss_pred CCCHHHHHHHHHHH---cCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHh
Q 000756 495 QLNRVQSRVYKSAL---SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (1300)
Q Consensus 495 ~ln~iQ~~~i~~~l---~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~ 571 (1300)
+|++.|..+-..++ ...+.+||.|-||||||......|-..+.+ +.+|.+..|+...|-|++.+++
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~-----------G~~vciASPRvDVclEl~~Rlk 165 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQ-----------GGRVCIASPRVDVCLELYPRLK 165 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhc-----------CCeEEEecCcccchHHHHHHHH
Confidence 79999998877765 446679999999999999877777766654 4589999999999999999999
Q ss_pred hhcccCCcEEEEEeCCCccchhhhccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccCChhHHHHHHHHHH
Q 000756 572 NRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTV 651 (1300)
Q Consensus 572 ~~l~~~gi~V~~ltGd~~~~~~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~ 651 (1300)
.-|. ++.+..++|++.... .++++|+|..+ +.|- -+.++++||||++..--...+.+...+...+
T Consensus 166 ~aF~--~~~I~~Lyg~S~~~f----r~plvVaTtHQ---LlrF------k~aFD~liIDEVDAFP~~~d~~L~~Av~~ar 230 (441)
T COG4098 166 QAFS--NCDIDLLYGDSDSYF----RAPLVVATTHQ---LLRF------KQAFDLLIIDEVDAFPFSDDQSLQYAVKKAR 230 (441)
T ss_pred Hhhc--cCCeeeEecCCchhc----cccEEEEehHH---HHHH------HhhccEEEEeccccccccCCHHHHHHHHHhh
Confidence 9887 466788999876543 38899999875 4442 3357999999999865434455655555432
Q ss_pred HHHhhccCCeeEEEEcccCCChHHHHH-HHhccccCceEEecCCc--ccccceeeEeeeecCchhHHHHHHHHHHHHHHH
Q 000756 652 RQIETTKEHIRLVGLSATLPNYEDVAL-FLRVNLEKGLFYFDNSY--RPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVV 728 (1300)
Q Consensus 652 ~~~~~~~~~~riV~LSATlpn~~dva~-~L~~~~~~~~~~f~~~~--rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 728 (1300)
...--+|.||||-++ .+.+ .+..+ .........| +|.|+...+..-.-.+...+- .+.-.++..+.
T Consensus 231 ------k~~g~~IylTATp~k--~l~r~~~~g~--~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~-kl~~kl~~~le 299 (441)
T COG4098 231 ------KKEGATIYLTATPTK--KLERKILKGN--LRILKLPARFHGKPLPVPKFVWIGNWNKKLQRN-KLPLKLKRWLE 299 (441)
T ss_pred ------cccCceEEEecCChH--HHHHHhhhCC--eeEeecchhhcCCCCCCCceEEeccHHHHhhhc-cCCHHHHHHHH
Confidence 345567999999654 2222 22111 1112222222 233333222221111111110 01112233343
Q ss_pred HHhC-CCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHH
Q 000756 729 AVAG-KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRG 807 (1300)
Q Consensus 729 ~~~~-~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~ 807 (1300)
.+.. +.|++||+++....+++|..|...... ..++..|+. ..
T Consensus 300 kq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~-----------------------------------~~i~~Vhs~--d~ 342 (441)
T COG4098 300 KQRKTGRPVLIFFPEIETMEQVAAALKKKLPK-----------------------------------ETIASVHSE--DQ 342 (441)
T ss_pred HHHhcCCcEEEEecchHHHHHHHHHHHhhCCc-----------------------------------cceeeeecc--Cc
Confidence 3333 789999999999999999988654311 125667774 46
Q ss_pred HHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCCCCCCceEEEEEeC
Q 000756 808 DRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITG 887 (1300)
Q Consensus 808 dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d~~G~~iil~~ 887 (1300)
+|.+..+.|++|++++||+|.+|+|||.+|.+.|.|-| ... .-++.+.++|++||+||.--...|..+.+-.
T Consensus 343 ~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlg-----aeh---~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~ 414 (441)
T COG4098 343 HRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLG-----AEH---RVFTESALVQIAGRVGRSLERPTGDVLFFHY 414 (441)
T ss_pred cHHHHHHHHHcCceEEEEEeehhhcccccccceEEEec-----CCc---ccccHHHHHHHhhhccCCCcCCCCcEEEEec
Confidence 78888999999999999999999999999999999853 332 2347889999999999976556777666644
Q ss_pred C
Q 000756 888 H 888 (1300)
Q Consensus 888 ~ 888 (1300)
.
T Consensus 415 G 415 (441)
T COG4098 415 G 415 (441)
T ss_pred c
Confidence 3
No 104
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.89 E-value=2.5e-21 Score=242.70 Aligned_cols=307 Identities=19% Similarity=0.254 Sum_probs=225.9
Q ss_pred CCCHHHHHHHHHHHcC---CC--eEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHH
Q 000756 495 QLNRVQSRVYKSALSS---AD--NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (1300)
Q Consensus 495 ~ln~iQ~~~i~~~l~~---~~--nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~ 569 (1300)
.-|+=|..||..+... .. +-||||.-|-|||-||+=|+...... ++.|.+++||--||+|-+++
T Consensus 594 eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~-----------GKQVAvLVPTTlLA~QHy~t 662 (1139)
T COG1197 594 EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD-----------GKQVAVLVPTTLLAQQHYET 662 (1139)
T ss_pred cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC-----------CCeEEEEcccHHhHHHHHHH
Confidence 5689999999988642 22 35999999999999999999988865 45799999999999999999
Q ss_pred HhhhcccCCcEEEEEeCCCccchhh-------hccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccCChhH
Q 000756 570 LSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPV 642 (1300)
Q Consensus 570 ~~~~l~~~gi~V~~ltGd~~~~~~~-------~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~ 642 (1300)
|++||..++++|..+..=.+...+. .+..+|||+|.- |+.+. .-+.+++|+||||-|+.+= .
T Consensus 663 FkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr----LL~kd---v~FkdLGLlIIDEEqRFGV----k 731 (1139)
T COG1197 663 FKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR----LLSKD---VKFKDLGLLIIDEEQRFGV----K 731 (1139)
T ss_pred HHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechH----hhCCC---cEEecCCeEEEechhhcCc----c
Confidence 9999999999999987644332221 257899999964 33333 3567899999999999642 2
Q ss_pred HHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHH-HHHhccccCceEEecCCcccccceeeEeeeecCchhHHHHHHHH
Q 000756 643 LESIVARTVRQIETTKEHIRLVGLSATLPNYEDVA-LFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMND 721 (1300)
Q Consensus 643 le~iv~rl~~~~~~~~~~~riV~LSATlpn~~dva-~~L~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~ 721 (1300)
-..-+ .....++-++-|||| |-+.-+. ...+.. .-.+.. .+..+..|++.++......
T Consensus 732 ~KEkL-------K~Lr~~VDvLTLSAT-PIPRTL~Msm~GiR-dlSvI~-TPP~~R~pV~T~V~~~d~~----------- 790 (1139)
T COG1197 732 HKEKL-------KELRANVDVLTLSAT-PIPRTLNMSLSGIR-DLSVIA-TPPEDRLPVKTFVSEYDDL----------- 790 (1139)
T ss_pred HHHHH-------HHHhccCcEEEeeCC-CCcchHHHHHhcch-hhhhcc-CCCCCCcceEEEEecCChH-----------
Confidence 11112 234568889999999 4333332 333332 111111 1222223444333322211
Q ss_pred HHHHHH-HHHhCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEe
Q 000756 722 LCYEKV-VAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIH 800 (1300)
Q Consensus 722 ~~~~~i-~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~ 800 (1300)
.+-+.+ .+...++|+-..+|..+..+..+..|++..++ ..|++-
T Consensus 791 ~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPE-----------------------------------arI~va 835 (1139)
T COG1197 791 LIREAILRELLRGGQVFYVHNRVESIEKKAERLRELVPE-----------------------------------ARIAVA 835 (1139)
T ss_pred HHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCc-----------------------------------eEEEEe
Confidence 122222 34455899988889999999999999887543 348889
Q ss_pred cCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCCCCCCce
Q 000756 801 HAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYG 880 (1300)
Q Consensus 801 Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d~~G 880 (1300)
||.|+..+-+.++..|-+|..+|||||.+.+.|||+|+.+.+|- .+..+ +..+++.|..||+||.. ..|
T Consensus 836 HGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiII----e~AD~-----fGLsQLyQLRGRVGRS~--~~A 904 (1139)
T COG1197 836 HGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIII----ERADK-----FGLAQLYQLRGRVGRSN--KQA 904 (1139)
T ss_pred ecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEE----ecccc-----ccHHHHHHhccccCCcc--ceE
Confidence 99999999999999999999999999999999999999887773 44443 58999999999999975 899
Q ss_pred EEEEEeCCCc
Q 000756 881 EGIIITGHSE 890 (1300)
Q Consensus 881 ~~iil~~~~~ 890 (1300)
.||+++.+.+
T Consensus 905 YAYfl~p~~k 914 (1139)
T COG1197 905 YAYFLYPPQK 914 (1139)
T ss_pred EEEEeecCcc
Confidence 9999998754
No 105
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.88 E-value=4.6e-22 Score=220.26 Aligned_cols=285 Identities=19% Similarity=0.254 Sum_probs=186.1
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHhh---hcccCCcEEEEEeCCCccch---hhhccceEEEECcchHHHHHhhcCCCcccc
Q 000756 549 SNYKIVYVAPMKALVAEVVGNLSN---RLQMYDVKVRELSGDQTLTR---QQIEETQIIVTTPEKWDIITRKSGDRTYTQ 622 (1300)
Q Consensus 549 ~~~kiv~iaP~kaLa~q~~~~~~~---~l~~~gi~V~~ltGd~~~~~---~~~~~~~IIV~TPekld~l~r~~~~~~~l~ 622 (1300)
+.+++|++-|.++|+.|....+.+ ......++-..+.|+..... +...+++|+|+||++++....+.. ..+.
T Consensus 285 Nap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~--~~lt 362 (725)
T KOG0349|consen 285 NAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGL--VTLT 362 (725)
T ss_pred CCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccc--eeee
Confidence 457899999999999999995544 33332334334555443332 234689999999999755554433 4677
Q ss_pred cccEEEEecccccccCChhHHHHHHHHHHHHHhhc---cCCeeEEEEcccCCCh--HHHH-------HHHhcccc----C
Q 000756 623 LVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETT---KEHIRLVGLSATLPNY--EDVA-------LFLRVNLE----K 686 (1300)
Q Consensus 623 ~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~---~~~~riV~LSATlpn~--~dva-------~~L~~~~~----~ 686 (1300)
.++++++||++.+.. ..+...+.|+..++... ...++.+..|||+.-. ..++ .|...... .
T Consensus 363 ~crFlvlDead~lL~---qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpe 439 (725)
T KOG0349|consen 363 HCRFLVLDEADLLLG---QGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPE 439 (725)
T ss_pred eeEEEEecchhhhhh---cccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccch
Confidence 899999999999873 33555666665555433 3567889999998642 2222 22221100 0
Q ss_pred ceEEe--------cCCcccccceeeEee--------------eecCchhHHHHHH-HHHHHHHHHHHhCCCeEEEEEcCh
Q 000756 687 GLFYF--------DNSYRPVPLSQQYIG--------------IQVKKPLQRFQLM-NDLCYEKVVAVAGKHQVLIFVHSR 743 (1300)
Q Consensus 687 ~~~~f--------~~~~rpv~l~~~~~~--------------~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~vLVFv~sr 743 (1300)
.+..+ +.++. .+.+ ++. +...........+ .+.+...+..+ .-.++||||.++
T Consensus 440 tvHhvv~lv~p~~d~sw~--~lr~-~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h-~mdkaiifcrtk 515 (725)
T KOG0349|consen 440 TVHHVVKLVCPSVDGSWC--DLRQ-FIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRH-AMDKAIIFCRTK 515 (725)
T ss_pred hhccceeecCCccCccHH--HHhh-hhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhh-ccCceEEEEecc
Confidence 00000 00000 0100 010 0111111111111 12222233333 256899999999
Q ss_pred HHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHHHHHHHhCCCccE
Q 000756 744 KETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQV 823 (1300)
Q Consensus 744 ~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~V 823 (1300)
.+|..+.+.+.+.+-. .+...++|+...+.+|..-++.|+.+..+.
T Consensus 516 ~dcDnLer~~~qkgg~----------------------------------~~scvclhgDrkP~Erk~nle~Fkk~dvkf 561 (725)
T KOG0349|consen 516 QDCDNLERMMNQKGGK----------------------------------HYSCVCLHGDRKPDERKANLESFKKFDVKF 561 (725)
T ss_pred ccchHHHHHHHHcCCc----------------------------------cceeEEEecCCChhHHHHHHHhhhhcCeEE
Confidence 9999999888876521 155788999999999999999999999999
Q ss_pred EEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCCCCCCceEEEEEeCC
Q 000756 824 LVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (1300)
Q Consensus 824 LVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d~~G~~iil~~~ 888 (1300)
||||+++++|+||.++-++|+-|.+-+ ...|+||+||+||+. +-|.+|.+...
T Consensus 562 lictdvaargldi~g~p~~invtlpd~----------k~nyvhrigrvgrae--rmglaislvat 614 (725)
T KOG0349|consen 562 LICTDVAARGLDITGLPFMINVTLPDD----------KTNYVHRIGRVGRAE--RMGLAISLVAT 614 (725)
T ss_pred EEEehhhhccccccCCceEEEEecCcc----------cchhhhhhhccchhh--hcceeEEEeec
Confidence 999999999999999999999765543 457999999999975 78888877543
No 106
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.86 E-value=2.5e-20 Score=243.49 Aligned_cols=336 Identities=17% Similarity=0.206 Sum_probs=194.1
Q ss_pred CCCCHHHHHHHHHHH----cCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHH
Q 000756 494 TQLNRVQSRVYKSAL----SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (1300)
Q Consensus 494 ~~ln~iQ~~~i~~~l----~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~ 569 (1300)
..++++|.+|+..+. ++.+++|+++|||||||.+++..+.+.+... ...+||+++|+++|+.|..+.
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~---------~~~rVLfLvDR~~L~~Qa~~~ 482 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAK---------RFRRILFLVDRSALGEQAEDA 482 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcC---------ccCeEEEEecHHHHHHHHHHH
Confidence 358999999998765 3456799999999999998766555544332 134899999999999999999
Q ss_pred HhhhcccCCcEEEEEeCCCccchh-hhccceEEEECcchHHH-HHhhc--CCCcccccccEEEEeccccccc-CC-----
Q 000756 570 LSNRLQMYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKWDI-ITRKS--GDRTYTQLVKLLIIDEIHLLHD-NR----- 639 (1300)
Q Consensus 570 ~~~~l~~~gi~V~~ltGd~~~~~~-~~~~~~IIV~TPekld~-l~r~~--~~~~~l~~v~liIiDEaH~l~d-~r----- 639 (1300)
|.......+..+..+.+-..+... .....+|+|+|..++-. +.... .....+..+++|||||||+-.. +.
T Consensus 483 F~~~~~~~~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~ 562 (1123)
T PRK11448 483 FKDTKIEGDQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEG 562 (1123)
T ss_pred HHhcccccccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccc
Confidence 987532222122111111111111 12357899999998522 22111 1113457789999999998421 00
Q ss_pred ---hhHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecC----------Ccc-cccceeeE-
Q 000756 640 ---GPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDN----------SYR-PVPLSQQY- 704 (1300)
Q Consensus 640 ---g~~le~iv~rl~~~~~~~~~~~riV~LSATlpn~~dva~~L~~~~~~~~~~f~~----------~~r-pv~l~~~~- 704 (1300)
............+.+.. . +..+||||||. . .....+++.. ++.++- .+. |......+
T Consensus 563 ~~~~~~~~~~~~~yr~iL~y-F-dA~~IGLTATP-~-r~t~~~FG~p----v~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~ 634 (1123)
T PRK11448 563 ELQFRDQLDYVSKYRRVLDY-F-DAVKIGLTATP-A-LHTTEIFGEP----VYTYSYREAVIDGYLIDHEPPIRIETRLS 634 (1123)
T ss_pred hhccchhhhHHHHHHHHHhh-c-CccEEEEecCC-c-cchhHHhCCe----eEEeeHHHHHhcCCcccCcCCEEEEEEec
Confidence 00001111222222221 1 35679999994 3 2334444421 111110 000 11111000
Q ss_pred -eeeecCc------------hh------H----HHHH---------HHHHHHHHHHHHh---CCCeEEEEEcChHHHHHH
Q 000756 705 -IGIQVKK------------PL------Q----RFQL---------MNDLCYEKVVAVA---GKHQVLIFVHSRKETAKT 749 (1300)
Q Consensus 705 -~~~~~~~------------~~------~----~~~~---------~~~~~~~~i~~~~---~~~~vLVFv~sr~~~~~~ 749 (1300)
.|+.... .. . .... .++.+...+.+.. ..+++||||.++..|..+
T Consensus 635 ~~gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i 714 (1123)
T PRK11448 635 QEGIHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMV 714 (1123)
T ss_pred cccccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHH
Confidence 0000000 00 0 0001 1112222222222 247999999999999999
Q ss_pred HHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHHHHHHHhCCCc-cEEEecc
Q 000756 750 ARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHV-QVLVSTA 828 (1300)
Q Consensus 750 a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i-~VLVaT~ 828 (1300)
+..|.+....... ..-...+..+||+++ ++..+++.|+++.. +|+|+++
T Consensus 715 ~~~L~~~f~~~~~----------------------------~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvd 764 (1123)
T PRK11448 715 VRLLKEAFKKKYG----------------------------QVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVD 764 (1123)
T ss_pred HHHHHHHHHhhcC----------------------------CcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEec
Confidence 9888765311100 000112445677775 56789999999887 6999999
Q ss_pred ccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCCCCC-CceEEEEEe
Q 000756 829 TLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD-SYGEGIIIT 886 (1300)
Q Consensus 829 tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d-~~G~~iil~ 886 (1300)
++.+|+|+|.+.+||. +.|.+ |...|+||+||+.|.-.+ ..-.++|+-
T Consensus 765 mL~TG~DvP~v~~vVf----~rpvk------S~~lf~QmIGRgtR~~~~~~K~~f~I~D 813 (1123)
T PRK11448 765 LLTTGIDVPSICNLVF----LRRVR------SRILYEQMLGRATRLCPEIGKTHFRIFD 813 (1123)
T ss_pred ccccCCCcccccEEEE----ecCCC------CHHHHHHHHhhhccCCccCCCceEEEEe
Confidence 9999999999999995 66665 899999999999997421 233444443
No 107
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.86 E-value=2.2e-19 Score=229.76 Aligned_cols=325 Identities=19% Similarity=0.210 Sum_probs=194.6
Q ss_pred CCCHHHHHHHHHHHcC-CCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhh
Q 000756 495 QLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (1300)
Q Consensus 495 ~ln~iQ~~~i~~~l~~-~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~ 573 (1300)
.|.|+|..+...++.. ...+|++-.+|.|||..+.+.+...+..+. ..++|||||. .|+.|+..++.++
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~---------~~rvLIVvP~-sL~~QW~~El~~k 221 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGR---------AERVLILVPE-TLQHQWLVEMLRR 221 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCC---------CCcEEEEcCH-HHHHHHHHHHHHH
Confidence 6899999998876643 346999999999999999776655544331 2479999997 8999999999877
Q ss_pred cccCCcEEEEEeCCCccc-----hhhhccceEEEECcchHHHHHhhc--CCCcccccccEEEEecccccccC---ChhHH
Q 000756 574 LQMYDVKVRELSGDQTLT-----RQQIEETQIIVTTPEKWDIITRKS--GDRTYTQLVKLLIIDEIHLLHDN---RGPVL 643 (1300)
Q Consensus 574 l~~~gi~V~~ltGd~~~~-----~~~~~~~~IIV~TPekld~l~r~~--~~~~~l~~v~liIiDEaH~l~d~---rg~~l 643 (1300)
|. +.+..+.++.... ...+...+++|+|.+.+ .+.. .....-..+++|||||||++... ....+
T Consensus 222 F~---l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l---~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y 295 (956)
T PRK04914 222 FN---LRFSLFDEERYAEAQHDADNPFETEQLVICSLDFL---RRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREY 295 (956)
T ss_pred hC---CCeEEEcCcchhhhcccccCccccCcEEEEEHHHh---hhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHH
Confidence 63 4444444332110 12233578999998743 2211 01111235799999999998631 11112
Q ss_pred HHHHHHHHHHHhhccCCeeEEEEcccCCC--hHH---------------HHHHHh-----------------ccc-c---
Q 000756 644 ESIVARTVRQIETTKEHIRLVGLSATLPN--YED---------------VALFLR-----------------VNL-E--- 685 (1300)
Q Consensus 644 e~iv~rl~~~~~~~~~~~riV~LSATlpn--~~d---------------va~~L~-----------------~~~-~--- 685 (1300)
. .+..+ . .....+++||||.-. .++ ...|.. ..+ .
T Consensus 296 ~-~v~~L----a--~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~ 368 (956)
T PRK04914 296 Q-VVEQL----A--EVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDA 368 (956)
T ss_pred H-HHHHH----h--hccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHH
Confidence 2 22222 1 123467899999431 111 111110 000 0
Q ss_pred -------------------------------------------CceEEecCCcccc---cc-eeeEeeeecCc-hhH---
Q 000756 686 -------------------------------------------KGLFYFDNSYRPV---PL-SQQYIGIQVKK-PLQ--- 714 (1300)
Q Consensus 686 -------------------------------------------~~~~~f~~~~rpv---~l-~~~~~~~~~~~-~~~--- 714 (1300)
.+-+.|......+ |- ..+.+.+.... +..
T Consensus 369 ~~~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~ 448 (956)
T PRK04914 369 LNALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIK 448 (956)
T ss_pred HHHHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHH
Confidence 0000011000000 00 00000010000 000
Q ss_pred ---------------HHHHH------------HHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhccccccccc
Q 000756 715 ---------------RFQLM------------NDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFL 767 (1300)
Q Consensus 715 ---------------~~~~~------------~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l 767 (1300)
.+..+ .+.+.+ +.....+.++||||+++..+..++..|+...
T Consensus 449 ~~~~~~~~~~l~pe~~~~~~~~~~~~~~~d~Ki~~L~~-~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~---------- 517 (956)
T PRK04914 449 VSLEARARDMLYPEQIYQEFEDNATWWNFDPRVEWLID-FLKSHRSEKVLVICAKAATALQLEQALRERE---------- 517 (956)
T ss_pred HhHHHHHHhhcCHHHHHHHHhhhhhccccCHHHHHHHH-HHHhcCCCeEEEEeCcHHHHHHHHHHHhhcc----------
Confidence 00000 001111 1222336799999999999999998885421
Q ss_pred ccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHHHHHHHhCC--CccEEEeccccccccCCCCcEEEEec
Q 000756 768 KEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDG--HVQVLVSTATLAWGVNLPAHTVIIKG 845 (1300)
Q Consensus 768 ~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g--~i~VLVaT~tla~GVdlPav~vVI~~ 845 (1300)
.+.+..+||+|+..+|..+.+.|+++ ..+|||||.++++|+|++.+++||+
T Consensus 518 --------------------------Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VIn- 570 (956)
T PRK04914 518 --------------------------GIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVL- 570 (956)
T ss_pred --------------------------CeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEE-
Confidence 13356789999999999999999974 6999999999999999999999998
Q ss_pred ceeccCCCCCcccCCHHHHHHhhhccCCCCCCCceEEEEEeCCC
Q 000756 846 TQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS 889 (1300)
Q Consensus 846 t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d~~G~~iil~~~~ 889 (1300)
||.+. ++..|.||+||+||.|.......++.+...
T Consensus 571 ---fDlP~------nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~ 605 (956)
T PRK04914 571 ---FDLPF------NPDLLEQRIGRLDRIGQKHDIQIHVPYLEG 605 (956)
T ss_pred ---ecCCC------CHHHHHHHhcccccCCCCceEEEEEccCCC
Confidence 77664 778899999999999844333334444433
No 108
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.86 E-value=1.5e-20 Score=204.75 Aligned_cols=183 Identities=21% Similarity=0.290 Sum_probs=143.1
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCc
Q 000756 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (1300)
Q Consensus 482 Lp~~~~~~f--~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~ 559 (1300)
+++.+...+ .|++.|+++|.++++.+++ ++|++++||||+|||.+++++++..+..... ..+++++|++|+
T Consensus 6 ~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~------~~~~~viii~p~ 78 (203)
T cd00268 6 LSPELLRGIYALGFEKPTPIQARAIPPLLS-GRDVIGQAQTGSGKTAAFLIPILEKLDPSPK------KDGPQALILAPT 78 (203)
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhc-CCcEEEECCCCCcHHHHHHHHHHHHHHhhcc------cCCceEEEEcCC
Confidence 344455444 5789999999999999987 5789999999999999999999998876521 135689999999
Q ss_pred HHHHHHHHHHHhhhcccCCcEEEEEeCCCccchh--hh-ccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccc
Q 000756 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ--QI-EETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (1300)
Q Consensus 560 kaLa~q~~~~~~~~l~~~gi~V~~ltGd~~~~~~--~~-~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~ 636 (1300)
++|+.|+...+.......++++..++|+...... .. .+++|+|+||+++..+.++.. ..+..++++|+||+|.+.
T Consensus 79 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~--~~~~~l~~lIvDE~h~~~ 156 (203)
T cd00268 79 RELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGK--LDLSKVKYLVLDEADRML 156 (203)
T ss_pred HHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC--CChhhCCEEEEeChHHhh
Confidence 9999999999988777778999999998765432 22 378999999999865555443 467889999999999987
Q ss_pred c-CChhHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhc
Q 000756 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRV 682 (1300)
Q Consensus 637 d-~rg~~le~iv~rl~~~~~~~~~~~riV~LSATlpn~~dva~~L~~ 682 (1300)
+ .++..+..++.++ ....+++++|||+++ ++..++..
T Consensus 157 ~~~~~~~~~~~~~~l-------~~~~~~~~~SAT~~~--~~~~~~~~ 194 (203)
T cd00268 157 DMGFEDQIREILKLL-------PKDRQTLLFSATMPK--EVRDLARK 194 (203)
T ss_pred ccChHHHHHHHHHhC-------CcccEEEEEeccCCH--HHHHHHHH
Confidence 5 3566666555532 458999999999984 45555543
No 109
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.85 E-value=3.4e-20 Score=228.94 Aligned_cols=372 Identities=23% Similarity=0.228 Sum_probs=252.0
Q ss_pred CCCCCHHHHHHHHHHHcC---CCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHH
Q 000756 493 MTQLNRVQSRVYKSALSS---ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (1300)
Q Consensus 493 ~~~ln~iQ~~~i~~~l~~---~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~ 569 (1300)
...+|+-|..++..+..+ ....|+.|.||||||-+|+-+|-+.+.++ ..+|+++|-.+|..|+..+
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G-----------kqvLvLVPEI~Ltpq~~~r 264 (730)
T COG1198 196 WLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG-----------KQVLVLVPEIALTPQLLAR 264 (730)
T ss_pred ccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcC-----------CEEEEEeccccchHHHHHH
Confidence 347899999999998766 46789999999999999999999988764 4699999999999999999
Q ss_pred HhhhcccCCcEEEEEeCCCccchhh-------hccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccc--cCCh
Q 000756 570 LSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH--DNRG 640 (1300)
Q Consensus 570 ~~~~l~~~gi~V~~ltGd~~~~~~~-------~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~--d~rg 640 (1300)
|+.+|+ .+|..++++.+...+. .++..|+|+| ++.-+..+.++++|||||=|.-. ...+
T Consensus 265 f~~rFg---~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGt---------RSAlF~Pf~~LGLIIvDEEHD~sYKq~~~ 332 (730)
T COG1198 265 FKARFG---AKVAVLHSGLSPGERYRVWRRARRGEARVVIGT---------RSALFLPFKNLGLIIVDEEHDSSYKQEDG 332 (730)
T ss_pred HHHHhC---CChhhhcccCChHHHHHHHHHHhcCCceEEEEe---------chhhcCchhhccEEEEeccccccccCCcC
Confidence 999885 6888888876654432 3678999999 23234568899999999999753 2344
Q ss_pred hHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhcccc-CceEEecCCcccc-cceeeEeeeecCchhHHHHH
Q 000756 641 PVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLE-KGLFYFDNSYRPV-PLSQQYIGIQVKKPLQRFQL 718 (1300)
Q Consensus 641 ~~le~iv~rl~~~~~~~~~~~riV~LSATlpn~~dva~~L~~~~~-~~~~~f~~~~rpv-~l~~~~~~~~~~~~~~~~~~ 718 (1300)
+.+.. |-+........++.+|+-||| |..+ .|..+... .....+...+... +....++.......... ..
T Consensus 333 prYhA---RdvA~~Ra~~~~~pvvLgSAT-PSLE---S~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~-~~ 404 (730)
T COG1198 333 PRYHA---RDVAVLRAKKENAPVVLGSAT-PSLE---SYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETG-RS 404 (730)
T ss_pred CCcCH---HHHHHHHHHHhCCCEEEecCC-CCHH---HHHhhhcCceEEEEccccccccCCCcceEEeccccccccC-cc
Confidence 44432 222333345678999999999 6544 44444211 1233333333322 34444554433221110 01
Q ss_pred HHHHHHHHHHHHhC-CCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcc----------cc-
Q 000756 719 MNDLCYEKVVAVAG-KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMV----------KS- 786 (1300)
Q Consensus 719 ~~~~~~~~i~~~~~-~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~----------~~- 786 (1300)
+...+++.+.+... +.|+|+|+|.|.-+-.+...=|.....+..+...+..+.......|.+|+.. .+
T Consensus 405 lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~ 484 (730)
T COG1198 405 LSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSE 484 (730)
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCC
Confidence 44566677766655 8899999999987766555444444455555554544444444444444322 11
Q ss_pred -------------hhhhhhhc-CCeEEecCCCCHHH--HHHHHHHHhCCCccEEEeccccccccCCCCcEEEE--eccee
Q 000756 787 -------------NDLKDLLP-YGFAIHHAGMTRGD--RQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVII--KGTQI 848 (1300)
Q Consensus 787 -------------~~L~~ll~-~gv~~~Hagl~~~d--R~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI--~~t~~ 848 (1300)
+.|+.++| ..|...-+..+... -+..+..|.+|+++|||.|..++.|.|+|+++.|. +.+..
T Consensus 485 ~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~ 564 (730)
T COG1198 485 HLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTG 564 (730)
T ss_pred eeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhh
Confidence 35666664 45666666655432 45678899999999999999999999999998864 33322
Q ss_pred ccCCCCCcccCCHHHHHHhhhccCCCCCCCceEEEEEeCCCcHHHHHHh
Q 000756 849 YNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSL 897 (1300)
Q Consensus 849 yd~~~g~~~~~S~~d~lQr~GRAGR~g~d~~G~~iil~~~~~~~~y~~l 897 (1300)
...+.-|..+-..+-+.|-.|||||.+ ..|.++|-|..++......+
T Consensus 565 L~~~DfRA~Er~fqll~QvaGRAgR~~--~~G~VvIQT~~P~hp~i~~~ 611 (730)
T COG1198 565 LGSPDFRASERTFQLLMQVAGRAGRAG--KPGEVVIQTYNPDHPAIQAL 611 (730)
T ss_pred hcCCCcchHHHHHHHHHHHHhhhccCC--CCCeEEEEeCCCCcHHHHHH
Confidence 222333456667888999999999975 89999999988875444433
No 110
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=1.8e-19 Score=224.21 Aligned_cols=128 Identities=16% Similarity=0.119 Sum_probs=97.3
Q ss_pred CCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhc
Q 000756 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1300)
Q Consensus 495 ~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l 574 (1300)
.+.++|--.--. ++.+ -|..++||+|||++|.+|++.....+ ..+++++|++.||.|.++.+...+
T Consensus 82 ~~ydvQliGg~~-Lh~G--~Iaem~TGeGKTL~a~Lpa~~~al~G-----------~~V~VvTpn~yLA~qd~e~m~~l~ 147 (896)
T PRK13104 82 RHFDVQLIGGMV-LHEG--NIAEMRTGEGKTLVATLPAYLNAISG-----------RGVHIVTVNDYLAKRDSQWMKPIY 147 (896)
T ss_pred CcchHHHhhhhh-hccC--ccccccCCCCchHHHHHHHHHHHhcC-----------CCEEEEcCCHHHHHHHHHHHHHHh
Confidence 445566554433 3332 48899999999999999999765432 248999999999999999999999
Q ss_pred ccCCcEEEEEeCCCccchh-hhccceEEEECcchH--HHHHhhcCC---CcccccccEEEEecccccc
Q 000756 575 QMYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKW--DIITRKSGD---RTYTQLVKLLIIDEIHLLH 636 (1300)
Q Consensus 575 ~~~gi~V~~ltGd~~~~~~-~~~~~~IIV~TPekl--d~l~r~~~~---~~~l~~v~liIiDEaH~l~ 636 (1300)
..+|++|+.++|+.+...+ ....++|+|+||+++ |.|..+... ......+.++||||||.+.
T Consensus 148 ~~lGLtv~~i~gg~~~~~r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiL 215 (896)
T PRK13104 148 EFLGLTVGVIYPDMSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSIL 215 (896)
T ss_pred cccCceEEEEeCCCCHHHHHHHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhh
Confidence 9999999999998765543 234789999999994 666544221 1233678999999999763
No 111
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=3.7e-19 Score=220.69 Aligned_cols=353 Identities=16% Similarity=0.165 Sum_probs=220.8
Q ss_pred CCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhc
Q 000756 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1300)
Q Consensus 495 ~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l 574 (1300)
.++++|--.--.+ +.+. |..+.||+|||+++.++++.....+ ..+-+++|+--||.+-+..+...+
T Consensus 80 ~~~dvQlig~l~l-~~G~--iaEm~TGEGKTLvA~l~a~l~al~G-----------~~v~vvT~neyLA~Rd~e~~~~~~ 145 (796)
T PRK12906 80 RPFDVQIIGGIVL-HEGN--IAEMKTGEGKTLTATLPVYLNALTG-----------KGVHVVTVNEYLSSRDATEMGELY 145 (796)
T ss_pred CCchhHHHHHHHH-hcCC--cccccCCCCCcHHHHHHHHHHHHcC-----------CCeEEEeccHHHHHhhHHHHHHHH
Confidence 5677777665543 3333 8899999999999999988776653 458889999999999999999999
Q ss_pred ccCCcEEEEEeCCCccch-hhhccceEEEECcchH--HHHHhhc---CCCcccccccEEEEecccccc-cC-Chh-----
Q 000756 575 QMYDVKVRELSGDQTLTR-QQIEETQIIVTTPEKW--DIITRKS---GDRTYTQLVKLLIIDEIHLLH-DN-RGP----- 641 (1300)
Q Consensus 575 ~~~gi~V~~ltGd~~~~~-~~~~~~~IIV~TPekl--d~l~r~~---~~~~~l~~v~liIiDEaH~l~-d~-rg~----- 641 (1300)
..+|++|+.++|+.+... +..-.++|+++|...+ |.|..+. .+......+.+.|||||+.+. |+ |-|
T Consensus 146 ~~LGl~vg~i~~~~~~~~r~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg 225 (796)
T PRK12906 146 RWLGLTVGLNLNSMSPDEKRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISG 225 (796)
T ss_pred HhcCCeEEEeCCCCCHHHHHHHhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCC
Confidence 999999999999865543 3456899999999885 5554432 122344567899999999653 21 211
Q ss_pred ---H---HHHHHHHHHHHHhhc----------------cCCeeEEEEcc----------cCCCh---H--HHHHHHhc--
Q 000756 642 ---V---LESIVARTVRQIETT----------------KEHIRLVGLSA----------TLPNY---E--DVALFLRV-- 682 (1300)
Q Consensus 642 ---~---le~iv~rl~~~~~~~----------------~~~~riV~LSA----------Tlpn~---~--dva~~L~~-- 682 (1300)
. +-..+.++...+... ....+.|.|+. .++|. . .+..|+..
T Consensus 226 ~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al 305 (796)
T PRK12906 226 QAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQAL 305 (796)
T ss_pred CCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHH
Confidence 1 111222222221110 01122233331 01110 1 11222210
Q ss_pred --------c-------------------------------------------ccCc------------------------
Q 000756 683 --------N-------------------------------------------LEKG------------------------ 687 (1300)
Q Consensus 683 --------~-------------------------------------------~~~~------------------------ 687 (1300)
+ +...
T Consensus 306 ~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa 385 (796)
T PRK12906 306 RANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTA 385 (796)
T ss_pred HHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCC
Confidence 0 0000
Q ss_pred -------------eEEecCCcccccceeeEeeeecCchhHHHHHHHHHHHHHHHH-HhCCCeEEEEEcChHHHHHHHHHH
Q 000756 688 -------------LFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKHQVLIFVHSRKETAKTARAI 753 (1300)
Q Consensus 688 -------------~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~vLVFv~sr~~~~~~a~~L 753 (1300)
-+..-|..+|+.-...- ..-......++..+ .+.+.. +..+.|+||||+|+..++.++..|
T Consensus 386 ~~e~~Ef~~iY~l~vv~IPtnkp~~r~d~~-d~i~~t~~~K~~al----~~~i~~~~~~g~pvLI~t~si~~se~ls~~L 460 (796)
T PRK12906 386 KTEEEEFREIYNMEVITIPTNRPVIRKDSP-DLLYPTLDSKFNAV----VKEIKERHAKGQPVLVGTVAIESSERLSHLL 460 (796)
T ss_pred HHHHHHHHHHhCCCEEEcCCCCCeeeeeCC-CeEEcCHHHHHHHH----HHHHHHHHhCCCCEEEEeCcHHHHHHHHHHH
Confidence 00001111121100000 00000111122222 222322 234789999999999999999999
Q ss_pred HHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccc
Q 000756 754 RDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWG 833 (1300)
Q Consensus 754 ~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~G 833 (1300)
...+.. ...+||++...++..+.+.++.|. |+|||++++||
T Consensus 461 ~~~gi~-------------------------------------~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRG 501 (796)
T PRK12906 461 DEAGIP-------------------------------------HAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRG 501 (796)
T ss_pred HHCCCC-------------------------------------eeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCC
Confidence 876422 456799999999999988888887 99999999999
Q ss_pred cCCC---CcE-----EEEecceeccCCCCCcccCCHHHHHHhhhccCCCCCCCceEEEEEeCCCcHH-------HHHHhh
Q 000756 834 VNLP---AHT-----VIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR-------YYLSLM 898 (1300)
Q Consensus 834 VdlP---av~-----vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d~~G~~iil~~~~~~~-------~y~~ll 898 (1300)
.||+ ++. +||. ++.+. |...+.|+.|||||.| .+|.+..+.+-++.- ...+++
T Consensus 502 tDI~l~~~V~~~GGLhVI~----te~pe------s~ri~~Ql~GRtGRqG--~~G~s~~~~sleD~l~~~f~~~~~~~~~ 569 (796)
T PRK12906 502 TDIKLGPGVKELGGLAVIG----TERHE------SRRIDNQLRGRSGRQG--DPGSSRFYLSLEDDLMRRFGSDRVKAFL 569 (796)
T ss_pred CCCCCCcchhhhCCcEEEe----eecCC------cHHHHHHHhhhhccCC--CCcceEEEEeccchHHHhhCcHHHHHHH
Confidence 9995 788 8997 66544 7889999999999988 899999888765421 122222
Q ss_pred ------cCCCCcccchhHhHHHHHH
Q 000756 899 ------NQQLPIESQFVSKLADQLN 917 (1300)
Q Consensus 899 ------~~~lPiES~l~~~l~d~ln 917 (1300)
....||++.+..+..+..-
T Consensus 570 ~~~~~~~~~~~i~~~~~~~~i~~aQ 594 (796)
T PRK12906 570 DRLGMNDDDQVIESRMITRQVESAQ 594 (796)
T ss_pred HHcCCCCCCCcccchHHHHHHHHHH
Confidence 3457888888776555443
No 112
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.84 E-value=2.4e-20 Score=196.67 Aligned_cols=158 Identities=30% Similarity=0.464 Sum_probs=126.3
Q ss_pred CHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhccc
Q 000756 497 NRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQM 576 (1300)
Q Consensus 497 n~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~ 576 (1300)
||+|.++++.++ ++++++++||||+|||+++++++++.+... . ..+++|++|+++|+.|++..+.+.+..
T Consensus 1 t~~Q~~~~~~i~-~~~~~li~aptGsGKT~~~~~~~l~~~~~~-~--------~~~~lii~P~~~l~~q~~~~~~~~~~~ 70 (169)
T PF00270_consen 1 TPLQQEAIEAII-SGKNVLISAPTGSGKTLAYILPALNRLQEG-K--------DARVLIIVPTRALAEQQFERLRKFFSN 70 (169)
T ss_dssp -HHHHHHHHHHH-TTSEEEEECSTTSSHHHHHHHHHHHHHHTT-S--------SSEEEEEESSHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHH-cCCCEEEECCCCCccHHHHHHHHHhhhccC-C--------CceEEEEeecccccccccccccccccc
Confidence 689999999998 557899999999999999999999988764 1 238999999999999999999999887
Q ss_pred CCcEEEEEeCCCccchh---hh-ccceEEEECcchHHHHHhhcCCCcccccccEEEEeccccccc-CChhHHHHHHHHHH
Q 000756 577 YDVKVRELSGDQTLTRQ---QI-EETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTV 651 (1300)
Q Consensus 577 ~gi~V~~ltGd~~~~~~---~~-~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~iv~rl~ 651 (1300)
.++++..++|+...... .+ .+++|+|+||+++..+.+.... .+..+++||+||+|.+.+ .++..+..++.++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~--~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~- 147 (169)
T PF00270_consen 71 TNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKI--NISRLSLIVIDEAHHLSDETFRAMLKSILRRL- 147 (169)
T ss_dssp TTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSS--TGTTESEEEEETHHHHHHTTHHHHHHHHHHHS-
T ss_pred cccccccccccccccccccccccccccccccCcchhhcccccccc--ccccceeeccCcccccccccHHHHHHHHHHHh-
Confidence 78899999998874422 12 4699999999998666655332 345599999999999987 4566565555543
Q ss_pred HHHhhccCCeeEEEEcccCC
Q 000756 652 RQIETTKEHIRLVGLSATLP 671 (1300)
Q Consensus 652 ~~~~~~~~~~riV~LSATlp 671 (1300)
.. ..+.++|++|||++
T Consensus 148 ---~~-~~~~~~i~~SAT~~ 163 (169)
T PF00270_consen 148 ---KR-FKNIQIILLSATLP 163 (169)
T ss_dssp ---HT-TTTSEEEEEESSST
T ss_pred ---cC-CCCCcEEEEeeCCC
Confidence 22 33689999999987
No 113
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.81 E-value=1.2e-18 Score=222.54 Aligned_cols=327 Identities=19% Similarity=0.222 Sum_probs=202.3
Q ss_pred CCHHHHHHHHHHHcC--CC-eEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhh
Q 000756 496 LNRVQSRVYKSALSS--AD-NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (1300)
Q Consensus 496 ln~iQ~~~i~~~l~~--~~-nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~ 572 (1300)
..+.|..++..+... .. .+++.||||+|||.+++.+++..+.... ....+++|+.|+++++.+++++++.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~-------~~~~r~i~vlP~~t~ie~~~~r~~~ 268 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKI-------KLKSRVIYVLPFRTIIEDMYRRAKE 268 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccc-------cccceEEEEccHHHHHHHHHHHHHh
Confidence 488999999887754 23 7899999999999999999888776631 1256899999999999999999998
Q ss_pred hcccCCcEEEEEeCCCccch----hh-------------hccceEEEECcchHHHH-HhhcCCCc-ccccccEEEEeccc
Q 000756 573 RLQMYDVKVRELSGDQTLTR----QQ-------------IEETQIIVTTPEKWDII-TRKSGDRT-YTQLVKLLIIDEIH 633 (1300)
Q Consensus 573 ~l~~~gi~V~~ltGd~~~~~----~~-------------~~~~~IIV~TPekld~l-~r~~~~~~-~l~~v~liIiDEaH 633 (1300)
.+...++....++|...... .. ..-..++++||-.+-.. ........ ..=..+++|+||+|
T Consensus 269 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h 348 (733)
T COG1203 269 IFGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVH 348 (733)
T ss_pred hhcccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHH
Confidence 77654433332333322110 00 01123455555543221 11111100 00124789999999
Q ss_pred ccccCC-hhHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhcccc-CceEEecCCcccccceeeEeeeecCc
Q 000756 634 LLHDNR-GPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLE-KGLFYFDNSYRPVPLSQQYIGIQVKK 711 (1300)
Q Consensus 634 ~l~d~r-g~~le~iv~rl~~~~~~~~~~~riV~LSATlpn~~dva~~L~~~~~-~~~~~f~~~~rpv~l~~~~~~~~~~~ 711 (1300)
.+.++. -..+.. ++.... ..+.++|.||||+|. .+.+.|..... .+....... .++....+. +....
T Consensus 349 ~~~~~~~~~~l~~----~i~~l~--~~g~~ill~SATlP~--~~~~~l~~~~~~~~~~~~~~~--~~~~~~e~~-~~~~~ 417 (733)
T COG1203 349 LYADETMLAALLA----LLEALA--EAGVPVLLMSATLPP--FLKEKLKKALGKGREVVENAK--FCPKEDEPG-LKRKE 417 (733)
T ss_pred hhcccchHHHHHH----HHHHHH--hCCCCEEEEecCCCH--HHHHHHHHHHhcccceecccc--ccccccccc-ccccc
Confidence 998763 223333 333222 347889999999996 33333322111 111121111 111110000 00000
Q ss_pred hhHHHHHHHHHHHHHHHHH-hCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhh
Q 000756 712 PLQRFQLMNDLCYEKVVAV-AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLK 790 (1300)
Q Consensus 712 ~~~~~~~~~~~~~~~i~~~-~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~ 790 (1300)
...............+... ..+++++|-|||...|.++...|+....
T Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~-------------------------------- 465 (733)
T COG1203 418 RVDVEDGPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGP-------------------------------- 465 (733)
T ss_pred chhhhhhhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCC--------------------------------
Confidence 0000000000111112222 2378999999999999999999987642
Q ss_pred hhhcCCeEEecCCCCHHHHHHHHHHH----hCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHH
Q 000756 791 DLLPYGFAIHHAGMTRGDRQLVEDLF----GDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQ 866 (1300)
Q Consensus 791 ~ll~~gv~~~Hagl~~~dR~~ve~~F----~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQ 866 (1300)
.+..+||.+...+|...++.+ +.+...|+|||.+.+.|||+. ..++|. ++. ++.+++|
T Consensus 466 -----~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mIT-----e~a-------PidSLIQ 527 (733)
T COG1203 466 -----KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLIT-----ELA-------PIDSLIQ 527 (733)
T ss_pred -----CEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeee-----cCC-------CHHHHHH
Confidence 267889999999999988854 457889999999999999996 666663 322 6788999
Q ss_pred hhhccCCCCCCCceEEEEEeCCCc
Q 000756 867 MLGRAGRPQYDSYGEGIIITGHSE 890 (1300)
Q Consensus 867 r~GRAGR~g~d~~G~~iil~~~~~ 890 (1300)
|+||++|-|....|..++......
T Consensus 528 R~GRv~R~g~~~~~~~~v~~~~~~ 551 (733)
T COG1203 528 RAGRVNRHGKKENGKIYVYNDEER 551 (733)
T ss_pred HHHHHhhcccccCCceeEeecccC
Confidence 999999988667788888776544
No 114
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=4.5e-18 Score=211.90 Aligned_cols=126 Identities=17% Similarity=0.123 Sum_probs=96.6
Q ss_pred CCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHH-HHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhh
Q 000756 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTIL-QQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (1300)
Q Consensus 495 ~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il-~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~ 573 (1300)
.++++|--.--. ++.+ -|..++||+|||++|.+|++ +.+.. ..+-+++|+..||.|.++.+...
T Consensus 81 ~~~dvQlig~l~-L~~G--~Iaem~TGeGKTLva~lpa~l~aL~G------------~~V~IvTpn~yLA~rd~e~~~~l 145 (830)
T PRK12904 81 RHFDVQLIGGMV-LHEG--KIAEMKTGEGKTLVATLPAYLNALTG------------KGVHVVTVNDYLAKRDAEWMGPL 145 (830)
T ss_pred CCCccHHHhhHH-hcCC--chhhhhcCCCcHHHHHHHHHHHHHcC------------CCEEEEecCHHHHHHHHHHHHHH
Confidence 556677665543 3433 48899999999999999995 55532 23678999999999999999999
Q ss_pred cccCCcEEEEEeCCCccchh-hhccceEEEECcchH--HHHHhhcC---CCcccccccEEEEeccccc
Q 000756 574 LQMYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLL 635 (1300)
Q Consensus 574 l~~~gi~V~~ltGd~~~~~~-~~~~~~IIV~TPekl--d~l~r~~~---~~~~l~~v~liIiDEaH~l 635 (1300)
+..+|++|+.++|+.+...+ ..-.++|+|+||..+ |.+..+.. .....+.+.++|||||+.+
T Consensus 146 ~~~LGlsv~~i~~~~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsi 213 (830)
T PRK12904 146 YEFLGLSVGVILSGMSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSI 213 (830)
T ss_pred HhhcCCeEEEEcCCCCHHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhh
Confidence 99999999999998766543 234689999999996 55544431 1134577899999999976
No 115
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.79 E-value=1.2e-17 Score=207.18 Aligned_cols=128 Identities=16% Similarity=0.096 Sum_probs=96.6
Q ss_pred CCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhc
Q 000756 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1300)
Q Consensus 495 ~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l 574 (1300)
.+.++|--.--. ++.+ -|..++||.|||++|.+|++.....+ ..|.+|+|+..||.+..+.+...+
T Consensus 82 ~~ydVQliGgl~-L~~G--~IaEm~TGEGKTL~a~lp~~l~al~g-----------~~VhIvT~ndyLA~RD~e~m~~l~ 147 (908)
T PRK13107 82 RHFDVQLLGGMV-LDSN--RIAEMRTGEGKTLTATLPAYLNALTG-----------KGVHVITVNDYLARRDAENNRPLF 147 (908)
T ss_pred CcCchHHhcchH-hcCC--ccccccCCCCchHHHHHHHHHHHhcC-----------CCEEEEeCCHHHHHHHHHHHHHHH
Confidence 345556543332 3333 48899999999999999998665442 249999999999999999999999
Q ss_pred ccCCcEEEEEeCCCccchhhh-ccceEEEECcchH--HHHHhhcC---CCcccccccEEEEecccccc
Q 000756 575 QMYDVKVRELSGDQTLTRQQI-EETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLLH 636 (1300)
Q Consensus 575 ~~~gi~V~~ltGd~~~~~~~~-~~~~IIV~TPekl--d~l~r~~~---~~~~l~~v~liIiDEaH~l~ 636 (1300)
..+|++|+.++|+.+...+.. -.++|+++||..+ |.|..+.. .......+.++|||||+.+.
T Consensus 148 ~~lGlsv~~i~~~~~~~~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiL 215 (908)
T PRK13107 148 EFLGLTVGINVAGLGQQEKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSIL 215 (908)
T ss_pred HhcCCeEEEecCCCCHHHHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhc
Confidence 999999999999877544333 3799999999995 66555422 12234678999999999764
No 116
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.79 E-value=6.1e-17 Score=201.15 Aligned_cols=133 Identities=17% Similarity=0.181 Sum_probs=107.4
Q ss_pred CCCCC---CHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHH
Q 000756 492 GMTQL---NRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVG 568 (1300)
Q Consensus 492 g~~~l---n~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~ 568 (1300)
||..| +|+|.++++.++.+. ++++.|+||+|||++|.+|++..+... ..+++|+|++.||.|.++
T Consensus 86 G~~~p~~~tp~qvQ~I~~i~l~~-gvIAeaqTGeGKTLAf~LP~l~~aL~g-----------~~v~IVTpTrELA~Qdae 153 (970)
T PRK12899 86 GYHQQWDMVPYDVQILGAIAMHK-GFITEMQTGEGKTLTAVMPLYLNALTG-----------KPVHLVTVNDYLAQRDCE 153 (970)
T ss_pred cccCCCCCChHHHHHhhhhhcCC-CeEEEeCCCCChHHHHHHHHHHHHhhc-----------CCeEEEeCCHHHHHHHHH
Confidence 56665 999999999988774 599999999999999999999776542 137889999999999999
Q ss_pred HHhhhcccCCcEEEEEeCCCccchhh-hccceEEEECcchH--HHHHhhcCCCc----ccccccEEEEecccccc
Q 000756 569 NLSNRLQMYDVKVRELSGDQTLTRQQ-IEETQIIVTTPEKW--DIITRKSGDRT----YTQLVKLLIIDEIHLLH 636 (1300)
Q Consensus 569 ~~~~~l~~~gi~V~~ltGd~~~~~~~-~~~~~IIV~TPekl--d~l~r~~~~~~----~l~~v~liIiDEaH~l~ 636 (1300)
.+......+|++|+.++|+.....+. ...++|+|+||+++ |.+.++..... ....+.++|||||+.+.
T Consensus 154 ~m~~L~k~lGLsV~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 154 WVGSVLRWLGLTTGVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred HHHHHHhhcCCeEEEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhh
Confidence 99998888899999999998876543 33689999999997 66655432211 23456899999999763
No 117
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.76 E-value=2.8e-16 Score=205.07 Aligned_cols=203 Identities=18% Similarity=0.237 Sum_probs=120.6
Q ss_pred eeEEEEcccCC---ChHHHHHHHhccccCceEEe-cCCcccccceeeEee--eec---CchhHHHHHHHHHHHHHHHHHh
Q 000756 661 IRLVGLSATLP---NYEDVALFLRVNLEKGLFYF-DNSYRPVPLSQQYIG--IQV---KKPLQRFQLMNDLCYEKVVAVA 731 (1300)
Q Consensus 661 ~riV~LSATlp---n~~dva~~L~~~~~~~~~~f-~~~~rpv~l~~~~~~--~~~---~~~~~~~~~~~~~~~~~i~~~~ 731 (1300)
..+|++||||. +..-+...++... .....+ .+.+.-..-...++. ++. .........+...+.+.+ ..
T Consensus 596 ~~~il~SATL~~~~~~~~~~~~lGl~~-~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~-~~- 672 (850)
T TIGR01407 596 KSLIFTSATLKFSHSFESFPQLLGLTD-VHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEIT-AI- 672 (850)
T ss_pred CeEEEEecccccCCChHHHHHhcCCCc-cccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHH-Hh-
Confidence 46799999997 4566777777642 111122 222210000011111 111 111122223333333332 22
Q ss_pred CCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHH
Q 000756 732 GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQL 811 (1300)
Q Consensus 732 ~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ 811 (1300)
.++++|||++|.+....++..|...... .++.++..+.. ..|..
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~-----------------------------------~~~~~l~q~~~-~~r~~ 716 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEF-----------------------------------EGYEVLAQGIN-GSRAK 716 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccc-----------------------------------cCceEEecCCC-ccHHH
Confidence 2578999999999999999888653211 11222333333 57888
Q ss_pred HHHHHhCCCccEEEeccccccccCCCCcE--EEEecceeccCCCC----------------CcccC----CHHHHHHhhh
Q 000756 812 VEDLFGDGHVQVLVSTATLAWGVNLPAHT--VIIKGTQIYNPEKG----------------AWTEL----SPLDIMQMLG 869 (1300)
Q Consensus 812 ve~~F~~g~i~VLVaT~tla~GVdlPav~--vVI~~t~~yd~~~g----------------~~~~~----S~~d~lQr~G 869 (1300)
+++.|+.|...||+||+.+++|||+|+.. +||-...+|.++.. .|..+ ....+.|.+|
T Consensus 717 ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~G 796 (850)
T TIGR01407 717 IKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALG 796 (850)
T ss_pred HHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhc
Confidence 99999999999999999999999999864 33334556654431 22333 3467889999
Q ss_pred ccCCCCCCCceEEEEEeCCCcHHHHHHhhcCCCC
Q 000756 870 RAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLP 903 (1300)
Q Consensus 870 RAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~lP 903 (1300)
|.-|.. +..|..+++-..-....|-+.+-+.+|
T Consensus 797 RlIRs~-~D~G~v~ilD~R~~~~~Yg~~~~~sLp 829 (850)
T TIGR01407 797 RLIRRE-NDRGSIVILDRRLVGKRYGKRFEKSLP 829 (850)
T ss_pred cccccC-CceEEEEEEccccccchHHHHHHHhCC
Confidence 999976 456877777655455566665555555
No 118
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.70 E-value=2.4e-15 Score=190.55 Aligned_cols=343 Identities=15% Similarity=0.148 Sum_probs=176.4
Q ss_pred CCHHHHHHHHHHHcC---------CCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHH
Q 000756 496 LNRVQSRVYKSALSS---------ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (1300)
Q Consensus 496 ln~iQ~~~i~~~l~~---------~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~ 566 (1300)
+++.|..++..++.. .++.+|+.|||||||+++...+...+... ...+||+|+|++.|..|+
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~---------~~~~vl~lvdR~~L~~Q~ 309 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELL---------KNPKVFFVVDRRELDYQL 309 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhc---------CCCeEEEEECcHHHHHHH
Confidence 577898888776432 35799999999999999877776555322 246899999999999999
Q ss_pred HHHHhhhcccCCcEEEEEeCCCccchhhh--ccceEEEECcchHHHHHhhcCCCcccccc-cEEEEecccccccCChhHH
Q 000756 567 VGNLSNRLQMYDVKVRELSGDQTLTRQQI--EETQIIVTTPEKWDIITRKSGDRTYTQLV-KLLIIDEIHLLHDNRGPVL 643 (1300)
Q Consensus 567 ~~~~~~~l~~~gi~V~~ltGd~~~~~~~~--~~~~IIV~TPekld~l~r~~~~~~~l~~v-~liIiDEaH~l~d~rg~~l 643 (1300)
.+.|....... + ...+....-...+ ....|+|+|..++...............- -+||+||||+...+ .+
T Consensus 310 ~~~f~~~~~~~---~-~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~---~~ 382 (667)
T TIGR00348 310 MKEFQSLQKDC---A-ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYG---EL 382 (667)
T ss_pred HHHHHhhCCCC---C-cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccch---HH
Confidence 99998764210 1 0111110000111 24689999999875322221110011111 28999999985421 12
Q ss_pred HHHHHHHHHHHhhccCCeeEEEEcccCCChHH--HHHHHhccccCceEEecC-----CcccccceeeEeeeec-----Cc
Q 000756 644 ESIVARTVRQIETTKEHIRLVGLSATLPNYED--VALFLRVNLEKGLFYFDN-----SYRPVPLSQQYIGIQV-----KK 711 (1300)
Q Consensus 644 e~iv~rl~~~~~~~~~~~riV~LSATlpn~~d--va~~L~~~~~~~~~~f~~-----~~rpv~l~~~~~~~~~-----~~ 711 (1300)
...+. ..-++..++|||||.-...+ -...++......++.+.- ..-.+|+. |.+... ..
T Consensus 383 ~~~l~-------~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~--Y~~~~~~~~~~~~ 453 (667)
T TIGR00348 383 AKNLK-------KALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKID--YEDRLPEDHLDRK 453 (667)
T ss_pred HHHHH-------hhCCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEE--EEecchhhccChH
Confidence 22221 12346789999999432111 111121100111111110 00111111 111100 00
Q ss_pred hh-----------------------H-HHHHH---------HHHHHHHHHHH----hC--CCeEEEEEcChHHHHHHHHH
Q 000756 712 PL-----------------------Q-RFQLM---------NDLCYEKVVAV----AG--KHQVLIFVHSRKETAKTARA 752 (1300)
Q Consensus 712 ~~-----------------------~-~~~~~---------~~~~~~~i~~~----~~--~~~vLVFv~sr~~~~~~a~~ 752 (1300)
.. + ....+ ...+...+.++ .. +++++|||.+|..|......
T Consensus 454 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~ 533 (667)
T TIGR00348 454 KLDAFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNA 533 (667)
T ss_pred HHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHH
Confidence 00 0 00000 00111112211 11 47999999999999999998
Q ss_pred HHHHhhccc-ccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCC-CHHHHHHHHHHHhC-CCccEEEeccc
Q 000756 753 IRDTALEND-TLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGM-TRGDRQLVEDLFGD-GHVQVLVSTAT 829 (1300)
Q Consensus 753 L~~~~~~~~-~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl-~~~dR~~ve~~F~~-g~i~VLVaT~t 829 (1300)
|.+...... .....+............. ...+.. .+..- .......+.+.|++ +.++|||+++.
T Consensus 534 l~~~~~~~~~~~~vv~s~~~~~~~~~~~~---------~~~~~~----~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdm 600 (667)
T TIGR00348 534 LDEELNEKFEASAIVMTGKESDDAEIRDY---------NKHIRT----KFDKSDGFEIYYKDLERFKKEENPKLLIVVDM 600 (667)
T ss_pred HHhhcccccCCeeEEecCCccchhHHHHH---------HHHhcc----ccccchhhhHHHHHHHHhcCCCCceEEEEEcc
Confidence 876543220 0000000000000000000 000000 00000 01134567888876 68999999999
Q ss_pred cccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCCCCCCceEEEEEeC
Q 000756 830 LAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITG 887 (1300)
Q Consensus 830 la~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d~~G~~iil~~ 887 (1300)
+-.|+|.|.+.+++. |-+. .-..++|++||+-|+-....-.++|+.-
T Consensus 601 llTGFDaP~l~tLyl-----dKpl------k~h~LlQai~R~nR~~~~~K~~g~IvDy 647 (667)
T TIGR00348 601 LLTGFDAPILNTLYL-----DKPL------KYHGLLQAIARTNRIDGKDKTFGLIVDY 647 (667)
T ss_pred cccccCCCccceEEE-----eccc------cccHHHHHHHHhccccCCCCCCEEEEEC
Confidence 999999999998874 3222 2235899999999952222223455543
No 119
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.67 E-value=1.3e-14 Score=186.81 Aligned_cols=325 Identities=18% Similarity=0.230 Sum_probs=187.2
Q ss_pred CCCHHHHHHHHHHH---cCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHh
Q 000756 495 QLNRVQSRVYKSAL---SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (1300)
Q Consensus 495 ~ln~iQ~~~i~~~l---~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~ 571 (1300)
.|.++|.+.+..++ ..+.+.|++-..|.|||+.++..+ ..+...... ...+|||||. ++..++.++|.
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL-~~L~~~~~~-------~gp~LIVvP~-SlL~nW~~Ei~ 239 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLL-GYLHEYRGI-------TGPHMVVAPK-STLGNWMNEIR 239 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHH-HHHHHhcCC-------CCCEEEEeCh-HHHHHHHHHHH
Confidence 78999999998765 345678999999999999875444 333322111 2358999996 77788999998
Q ss_pred hhcccCCcEEEEEeCCCccchhh------hccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccCChhHHHH
Q 000756 572 NRLQMYDVKVRELSGDQTLTRQQ------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLES 645 (1300)
Q Consensus 572 ~~l~~~gi~V~~ltGd~~~~~~~------~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~ 645 (1300)
+++. .+++..++|+....... ....+|+|+|++.+ .+.... ..--...+|||||+|.+.....
T Consensus 240 kw~p--~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l---~~e~~~-L~k~~W~~VIvDEAHrIKN~~S----- 308 (1033)
T PLN03142 240 RFCP--VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMA---IKEKTA-LKRFSWRYIIIDEAHRIKNENS----- 308 (1033)
T ss_pred HHCC--CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHH---HHHHHH-hccCCCCEEEEcCccccCCHHH-----
Confidence 8764 46778888865422111 13578999999864 221110 0112368999999999865321
Q ss_pred HHHHHHHHHhhccCCeeEEEEcccCC--ChHHHHHHHhccccCceEE----e------cC-------------Cccc---
Q 000756 646 IVARTVRQIETTKEHIRLVGLSATLP--NYEDVALFLRVNLEKGLFY----F------DN-------------SYRP--- 697 (1300)
Q Consensus 646 iv~rl~~~~~~~~~~~riV~LSATlp--n~~dva~~L~~~~~~~~~~----f------~~-------------~~rp--- 697 (1300)
.+++.++.+ ... ..++||+|.- +..++...|..-.. ++|. | .. -.+|
T Consensus 309 klskalr~L---~a~-~RLLLTGTPlqNnl~ELwsLL~FL~P-~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~L 383 (1033)
T PLN03142 309 LLSKTMRLF---STN-YRLLITGTPLQNNLHELWALLNFLLP-EIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLL 383 (1033)
T ss_pred HHHHHHHHh---hcC-cEEEEecCCCCCCHHHHHHHHhcCCC-CcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHh
Confidence 122332222 223 3478999932 23333332221100 0000 0 00 0000
Q ss_pred ----------c-cceeeEeeeecCchhHH-HHHH------------------H------HHH------------------
Q 000756 698 ----------V-PLSQQYIGIQVKKPLQR-FQLM------------------N------DLC------------------ 723 (1300)
Q Consensus 698 ----------v-~l~~~~~~~~~~~~~~~-~~~~------------------~------~~~------------------ 723 (1300)
. |.....+.+........ +..+ + ..|
T Consensus 384 RR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~ 463 (1033)
T PLN03142 384 RRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTG 463 (1033)
T ss_pred hhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccch
Confidence 0 11111111111100000 0000 0 000
Q ss_pred ------------HHHHHHHh--CCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhh
Q 000756 724 ------------YEKVVAVA--GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDL 789 (1300)
Q Consensus 724 ------------~~~i~~~~--~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L 789 (1300)
...++... .+.++|||+........+...|..
T Consensus 464 e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~---------------------------------- 509 (1033)
T PLN03142 464 EHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMY---------------------------------- 509 (1033)
T ss_pred hHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHH----------------------------------
Confidence 00000000 134555555443333222222211
Q ss_pred hhhhcCCeEEecCCCCHHHHHHHHHHHhC---CCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHH
Q 000756 790 KDLLPYGFAIHHAGMTRGDRQLVEDLFGD---GHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQ 866 (1300)
Q Consensus 790 ~~ll~~gv~~~Hagl~~~dR~~ve~~F~~---g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQ 866 (1300)
..+++..+||+++..+|..+.+.|.. +..-+|+||.+.+.||||...++||. ||++- ++....|
T Consensus 510 ---~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIi----yD~dW------NP~~d~Q 576 (1033)
T PLN03142 510 ---RGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVIL----YDSDW------NPQVDLQ 576 (1033)
T ss_pred ---cCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEE----eCCCC------ChHHHHH
Confidence 13566778999999999999999964 23467999999999999999999998 55442 5677999
Q ss_pred hhhccCCCCCCCceEEEEEeCCCcH
Q 000756 867 MLGRAGRPQYDSYGEGIIITGHSEL 891 (1300)
Q Consensus 867 r~GRAGR~g~d~~G~~iil~~~~~~ 891 (1300)
++|||-|.|..+.-.+|.+++....
T Consensus 577 AidRaHRIGQkk~V~VyRLIt~gTI 601 (1033)
T PLN03142 577 AQDRAHRIGQKKEVQVFRFCTEYTI 601 (1033)
T ss_pred HHHHhhhcCCCceEEEEEEEeCCcH
Confidence 9999999997777777777776653
No 120
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.65 E-value=4e-15 Score=170.13 Aligned_cols=355 Identities=12% Similarity=0.038 Sum_probs=232.8
Q ss_pred hhHhhcCCC--CCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHH
Q 000756 485 WAQPAFKGM--TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (1300)
Q Consensus 485 ~~~~~f~g~--~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaL 562 (1300)
.+...+.|. ..+..+|..++..+-++ +|+++.-.|.+||++|+.++....+.... ....+|+.||+++
T Consensus 274 ~~~~~~~~~~~E~~~~~~~~~~~~~~~G-~~~~~~~~~~~GK~~~~~~~s~~~~~~~~---------~s~~~~~~~~~~~ 343 (1034)
T KOG4150|consen 274 SIRSLLNKNTGESGIAISLELLKFASEG-RADGGNEARQAGKGTCPTSGSRKFQTLCH---------ATNSLLPSEMVEH 343 (1034)
T ss_pred HHHHHHhcccccchhhhhHHHHhhhhhc-ccccccchhhcCCccCcccchhhhhhcCc---------ccceecchhHHHH
Confidence 344455444 46789999999987554 77999999999999999998877665532 2247899999999
Q ss_pred HHHHHHHHhhhcccC----CcEEEEEeCCCccchhh--hccceEEEECcchH-H-HHHhhcCCCcccccccEEEEecccc
Q 000756 563 VAEVVGNLSNRLQMY----DVKVRELSGDQTLTRQQ--IEETQIIVTTPEKW-D-IITRKSGDRTYTQLVKLLIIDEIHL 634 (1300)
Q Consensus 563 a~q~~~~~~~~l~~~----gi~V~~ltGd~~~~~~~--~~~~~IIV~TPekl-d-~l~r~~~~~~~l~~v~liIiDEaH~ 634 (1300)
++...+-+.-.+... +..|-...|++..++.. ..+.+++++.|... . .+......+.++-...++++||+|.
T Consensus 344 ~~~~~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~ 423 (1034)
T KOG4150|consen 344 LRNGSKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCAL 423 (1034)
T ss_pred hhccCCceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceee
Confidence 988755543332211 22234444555544443 35788999999874 2 2333222334455678899999999
Q ss_pred cccCChhHHHHHHHHHHHHHhh--ccCCeeEEEEcccCCChHHHH-HHHhccccCceEEecCCcccccceeeEeeee---
Q 000756 635 LHDNRGPVLESIVARTVRQIET--TKEHIRLVGLSATLPNYEDVA-LFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQ--- 708 (1300)
Q Consensus 635 l~d~rg~~le~iv~rl~~~~~~--~~~~~riV~LSATlpn~~dva-~~L~~~~~~~~~~f~~~~rpv~l~~~~~~~~--- 708 (1300)
....+|......+.++.+.+.. ...+.+++-.|||+-+..... +.++.+ ...+...+++ |..-...++.-+
T Consensus 424 Y~~~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~-E~~Li~~DGS--Ps~~K~~V~WNP~~~ 500 (1034)
T KOG4150|consen 424 YLFPTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLS-ELELVTIDGS--PSSEKLFVLWNPSAP 500 (1034)
T ss_pred eecchhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCc-ceEEEEecCC--CCccceEEEeCCCCC
Confidence 8877777777777777665533 356789999999998754443 444443 2334444443 332222222111
Q ss_pred cCc---hhHHHHHHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccc
Q 000756 709 VKK---PLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVK 785 (1300)
Q Consensus 709 ~~~---~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~ 785 (1300)
..+ ..........+..+.+.. +-++|.||++|+-|+-+....++...+...
T Consensus 501 P~~~~~~~~~i~E~s~~~~~~i~~---~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~----------------------- 554 (1034)
T KOG4150|consen 501 PTSKSEKSSKVVEVSHLFAEMVQH---GLRCIAFCPSRKLCELVLCLTREILAETAP----------------------- 554 (1034)
T ss_pred CcchhhhhhHHHHHHHHHHHHHHc---CCcEEEeccHHHHHHHHHHHHHHHHHHhhH-----------------------
Confidence 111 112222223333333322 568999999999999888777665533211
Q ss_pred chhhhhhhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHH
Q 000756 786 SNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIM 865 (1300)
Q Consensus 786 ~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~l 865 (1300)
.|. -.|..+.||-+.+||+.++...-.|++.-+|||+.|+-|||+-..+.|++...+ +|...+.
T Consensus 555 --~LV----~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP----------~S~aNl~ 618 (1034)
T KOG4150|consen 555 --HLV----EAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFP----------GSIANLW 618 (1034)
T ss_pred --HHH----HHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccCc----------hhHHHHH
Confidence 000 013446899999999999999999999999999999999999999999984433 4899999
Q ss_pred HhhhccCCCCCCCceEEEEEe-CCCcHHHHHH
Q 000756 866 QMLGRAGRPQYDSYGEGIIIT-GHSELRYYLS 896 (1300)
Q Consensus 866 Qr~GRAGR~g~d~~G~~iil~-~~~~~~~y~~ 896 (1300)
|.+|||||.. ++..++.+. ..+-.++|.+
T Consensus 619 QQ~GRAGRRN--k~SLavyva~~~PVDQ~Y~~ 648 (1034)
T KOG4150|consen 619 QQAGRAGRRN--KPSLAVYVAFLGPVDQYYMS 648 (1034)
T ss_pred HHhccccccC--CCceEEEEEeccchhhHhhc
Confidence 9999999986 444444443 3334466664
No 121
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.65 E-value=1.8e-14 Score=174.62 Aligned_cols=309 Identities=18% Similarity=0.246 Sum_probs=183.8
Q ss_pred CCCCCHHHHHHHHHHH----cCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHH
Q 000756 493 MTQLNRVQSRVYKSAL----SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVG 568 (1300)
Q Consensus 493 ~~~ln~iQ~~~i~~~l----~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~ 568 (1300)
-..++.+|..|+..+. .+...+|+++.||+|||..|+..|.+.+..+ .-.+||+++-+++|+.|.+.
T Consensus 163 ~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~---------~~KRVLFLaDR~~Lv~QA~~ 233 (875)
T COG4096 163 AIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSG---------WVKRVLFLADRNALVDQAYG 233 (875)
T ss_pred cccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcc---------hhheeeEEechHHHHHHHHH
Confidence 4578999999998754 3455699999999999999976666555443 24589999999999999999
Q ss_pred HHhhhcccCCcEEEEEeCCCccchhhhccceEEEECcchHH-HHHhhcC--CCcccccccEEEEecccccccCChhHHHH
Q 000756 569 NLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWD-IITRKSG--DRTYTQLVKLLIIDEIHLLHDNRGPVLES 645 (1300)
Q Consensus 569 ~~~~~l~~~gi~V~~ltGd~~~~~~~~~~~~IIV~TPekld-~l~r~~~--~~~~l~~v~liIiDEaH~l~d~rg~~le~ 645 (1300)
.|...+ +.+-.+..+++-.... .++|.|+|...+- .+..... .......++||||||||.=.- ..+..
T Consensus 234 af~~~~-P~~~~~n~i~~~~~~~-----s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~---~~~~~ 304 (875)
T COG4096 234 AFEDFL-PFGTKMNKIEDKKGDT-----SSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIY---SEWSS 304 (875)
T ss_pred HHHHhC-CCccceeeeecccCCc-----ceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHH---hhhHH
Confidence 987754 4454455444432221 5899999999763 3332211 223345589999999997321 11223
Q ss_pred HHHHHHHHHhhccCCeeEEEEcccCCChHHHH--HHHhccccCceEEec----------CCcccc--cceeeEeeeecCc
Q 000756 646 IVARTVRQIETTKEHIRLVGLSATLPNYEDVA--LFLRVNLEKGLFYFD----------NSYRPV--PLSQQYIGIQVKK 711 (1300)
Q Consensus 646 iv~rl~~~~~~~~~~~riV~LSATlpn~~dva--~~L~~~~~~~~~~f~----------~~~rpv--~l~~~~~~~~~~~ 711 (1300)
|+.-. . ..++||+||+.+-.+.. .|+...| ++.++ ..++++ ++....-|+....
T Consensus 305 I~dYF----d-----A~~~gLTATP~~~~d~~T~~~F~g~P---t~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~ 372 (875)
T COG4096 305 ILDYF----D-----AATQGLTATPKETIDRSTYGFFNGEP---TYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDA 372 (875)
T ss_pred HHHHH----H-----HHHHhhccCcccccccccccccCCCc---ceeecHHHHhhccccCCCCceEEeeeccccCcCcCc
Confidence 33222 1 12377799965533332 3341111 11110 112222 1211112221111
Q ss_pred hh-----------------------------HHHHHHHHHHHHHHHHH-hC--CCeEEEEEcChHHHHHHHHHHHHHhhc
Q 000756 712 PL-----------------------------QRFQLMNDLCYEKVVAV-AG--KHQVLIFVHSRKETAKTARAIRDTALE 759 (1300)
Q Consensus 712 ~~-----------------------------~~~~~~~~~~~~~i~~~-~~--~~~vLVFv~sr~~~~~~a~~L~~~~~~ 759 (1300)
.. .+.......+-+.+... .+ -+++||||.+...|+.++..|......
T Consensus 373 ~serek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype 452 (875)
T COG4096 373 GSEREKLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPE 452 (875)
T ss_pred cchhhhhhccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCcc
Confidence 10 00111112222222221 11 368999999999999999998876543
Q ss_pred ccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHHHHHHHh-CCCccEEEeccccccccCCCC
Q 000756 760 NDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFG-DGHVQVLVSTATLAWGVNLPA 838 (1300)
Q Consensus 760 ~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~-~g~i~VLVaT~tla~GVdlPa 838 (1300)
.+. .| +..+.+. ....+..+-+.+. +.-.+|.|+.+.+..|||+|.
T Consensus 453 ~~~--~~------------------------------a~~IT~d-~~~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpe 499 (875)
T COG4096 453 YNG--RY------------------------------AMKITGD-AEQAQALIDNFIDKEKYPRIAITVDLLTTGVDVPE 499 (875)
T ss_pred ccC--ce------------------------------EEEEecc-chhhHHHHHHHHhcCCCCceEEehhhhhcCCCchh
Confidence 210 00 1122222 3444555555554 455788999999999999999
Q ss_pred cEEEEecceeccCCCCCcccCCHHHHHHhhhccCCC
Q 000756 839 HTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRP 874 (1300)
Q Consensus 839 v~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~ 874 (1300)
+..+| |+-.-. |..-|.||+||+-|.
T Consensus 500 v~nlV-----F~r~Vr-----SktkF~QMvGRGTRl 525 (875)
T COG4096 500 VVNLV-----FDRKVR-----SKTKFKQMVGRGTRL 525 (875)
T ss_pred eeeee-----ehhhhh-----hHHHHHHHhcCcccc
Confidence 99888 443321 889999999999996
No 122
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.63 E-value=1.1e-13 Score=173.39 Aligned_cols=115 Identities=19% Similarity=0.252 Sum_probs=96.5
Q ss_pred CCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHH
Q 000756 732 GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQL 811 (1300)
Q Consensus 732 ~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ 811 (1300)
.+.++||||+|++.++.++..|.+.+ ..+.++|++++..+|..
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~g-------------------------------------i~~~~lh~~~~~~eR~~ 483 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKELG-------------------------------------IKVRYLHSEIDTLERVE 483 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhhc-------------------------------------cceeeeeCCCCHHHHHH
Confidence 37799999999999999999987654 23577899999999999
Q ss_pred HHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCCCCCCceEEEEEeCCCcH
Q 000756 812 VEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL 891 (1300)
Q Consensus 812 ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d~~G~~iil~~~~~~ 891 (1300)
+++.|+.|.+.|||||+.+++|+|+|.+.+||. +|....+ .+-+..+|+||+|||||. ..|.++++++....
T Consensus 484 ~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi----~DadifG-~p~~~~~~iqriGRagR~---~~G~vi~~~~~~~~ 555 (655)
T TIGR00631 484 IIRDLRLGEFDVLVGINLLREGLDLPEVSLVAI----LDADKEG-FLRSERSLIQTIGRAARN---VNGKVIMYADKITD 555 (655)
T ss_pred HHHHHhcCCceEEEEcChhcCCeeeCCCcEEEE----eCccccc-CCCCHHHHHHHhcCCCCC---CCCEEEEEEcCCCH
Confidence 999999999999999999999999999998876 5532210 122788999999999996 47999999886553
No 123
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.61 E-value=2.1e-13 Score=175.69 Aligned_cols=82 Identities=20% Similarity=0.310 Sum_probs=61.8
Q ss_pred CCCCCCCHHHHH---HHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHH
Q 000756 491 KGMTQLNRVQSR---VYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567 (1300)
Q Consensus 491 ~g~~~ln~iQ~~---~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~ 567 (1300)
.|| ++++-|.+ ++..++..+..+++.|+||+|||++|++|++... .+.++|+++||++|++|+.
T Consensus 242 ~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~------------~~~~vvI~t~T~~Lq~Ql~ 308 (820)
T PRK07246 242 LGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS------------DQRQIIVSVPTKILQDQIM 308 (820)
T ss_pred CCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc------------CCCcEEEEeCcHHHHHHHH
Confidence 555 68999999 5556677788899999999999999999987643 1347999999999999995
Q ss_pred -HHHhhhcccCCcEEEEEe
Q 000756 568 -GNLSNRLQMYDVKVRELS 585 (1300)
Q Consensus 568 -~~~~~~l~~~gi~V~~lt 585 (1300)
+.+....+.+++++..+.
T Consensus 309 ~~~i~~l~~~~~~~~~~~k 327 (820)
T PRK07246 309 AEEVKAIQEVFHIDCHSLK 327 (820)
T ss_pred HHHHHHHHHhcCCcEEEEE
Confidence 445443333455555443
No 124
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.61 E-value=1.6e-14 Score=155.04 Aligned_cols=166 Identities=27% Similarity=0.351 Sum_probs=122.0
Q ss_pred CCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHh
Q 000756 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (1300)
Q Consensus 492 g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~ 571 (1300)
++..++++|.+++..++....++++++|||+|||.++..++++.+.... ..+++|++|+++++.|+...+.
T Consensus 5 ~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~---------~~~~l~~~p~~~~~~~~~~~~~ 75 (201)
T smart00487 5 GFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK---------GKRVLVLVPTRELAEQWAEELK 75 (201)
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC---------CCcEEEEeCCHHHHHHHHHHHH
Confidence 4678999999999998876467999999999999999999988876531 3479999999999999999998
Q ss_pred hhcccCC-cEEEEEeCCCccch--hhhccc-eEEEECcchHHHHHhhcCCCcccccccEEEEeccccccc-CChhHHHHH
Q 000756 572 NRLQMYD-VKVRELSGDQTLTR--QQIEET-QIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESI 646 (1300)
Q Consensus 572 ~~l~~~g-i~V~~ltGd~~~~~--~~~~~~-~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~i 646 (1300)
..+.... ..+..+.|...... ...... +++++|++.+........ .....++++|+||+|.+.. .+...+..+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~--~~~~~~~~iIiDE~h~~~~~~~~~~~~~~ 153 (201)
T smart00487 76 KLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL--LELSNVDLVILDEAHRLLDGGFGDQLEKL 153 (201)
T ss_pred HHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC--cCHhHCCEEEEECHHHHhcCCcHHHHHHH
Confidence 8776544 44444444432111 112233 999999998755554433 3456789999999999986 555555544
Q ss_pred HHHHHHHHhhccCCeeEEEEcccCCChHH
Q 000756 647 VARTVRQIETTKEHIRLVGLSATLPNYED 675 (1300)
Q Consensus 647 v~rl~~~~~~~~~~~riV~LSATlpn~~d 675 (1300)
+..+ ....+++++|||+++..+
T Consensus 154 ~~~~-------~~~~~~v~~saT~~~~~~ 175 (201)
T smart00487 154 LKLL-------PKNVQLLLLSATPPEEIE 175 (201)
T ss_pred HHhC-------CccceEEEEecCCchhHH
Confidence 4332 567899999999875433
No 125
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.60 E-value=3.2e-13 Score=170.72 Aligned_cols=114 Identities=18% Similarity=0.259 Sum_probs=95.9
Q ss_pred CCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHH
Q 000756 732 GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQL 811 (1300)
Q Consensus 732 ~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ 811 (1300)
.+.++||||+|++.++.++..|.+.+ ..+.++||+++..+|..
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~g-------------------------------------i~~~~~h~~~~~~~R~~ 487 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKELG-------------------------------------IKVRYLHSDIDTLERVE 487 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcc-------------------------------------eeEEEEECCCCHHHHHH
Confidence 37799999999999999999887643 23677899999999999
Q ss_pred HHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCCCCCCceEEEEEeCCCc
Q 000756 812 VEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE 890 (1300)
Q Consensus 812 ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d~~G~~iil~~~~~ 890 (1300)
+++.|+.|.+.|||||+.+++|+|+|++.+||. ++.+..+ -+-+..+|+||+||+||. ..|.++++++...
T Consensus 488 ~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii----~d~eifG-~~~~~~~yiqr~GR~gR~---~~G~~i~~~~~~~ 558 (652)
T PRK05298 488 IIRDLRLGEFDVLVGINLLREGLDIPEVSLVAI----LDADKEG-FLRSERSLIQTIGRAARN---VNGKVILYADKIT 558 (652)
T ss_pred HHHHHHcCCceEEEEeCHHhCCccccCCcEEEE----eCCcccc-cCCCHHHHHHHhccccCC---CCCEEEEEecCCC
Confidence 999999999999999999999999999998886 5433211 112788999999999995 5899999998543
No 126
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.60 E-value=5.8e-13 Score=174.75 Aligned_cols=135 Identities=19% Similarity=0.323 Sum_probs=94.2
Q ss_pred CCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHHH
Q 000756 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLV 812 (1300)
Q Consensus 733 ~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~v 812 (1300)
++++|||++|.+....++..|...... .++.++--|++...|..+
T Consensus 752 ~g~~LVLFtSy~~l~~v~~~l~~~~~~-----------------------------------~~~~ll~Qg~~~~~r~~l 796 (928)
T PRK08074 752 KGRMLVLFTSYEMLKKTYYNLKNEEEL-----------------------------------EGYVLLAQGVSSGSRARL 796 (928)
T ss_pred CCCEEEEECCHHHHHHHHHHHhhcccc-----------------------------------cCceEEecCCCCCCHHHH
Confidence 679999999999999999888653211 111222224544568889
Q ss_pred HHHHhCCCccEEEeccccccccCCCCc--EEEEecceeccCCCC----------------CcccC----CHHHHHHhhhc
Q 000756 813 EDLFGDGHVQVLVSTATLAWGVNLPAH--TVIIKGTQIYNPEKG----------------AWTEL----SPLDIMQMLGR 870 (1300)
Q Consensus 813 e~~F~~g~i~VLVaT~tla~GVdlPav--~vVI~~t~~yd~~~g----------------~~~~~----S~~d~lQr~GR 870 (1300)
.+.|+.+.-.||++|..+..|||+|+- ..||-...+|.++.. .|.++ ....+.|-+||
T Consensus 797 ~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GR 876 (928)
T PRK08074 797 TKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGR 876 (928)
T ss_pred HHHHHhcCCeEEEecCcccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhh
Confidence 999999888999999999999999984 455544556754432 23333 35667899999
Q ss_pred cCCCCCCCceEEEEEeCCCcHHHHHHhhcCCCC
Q 000756 871 AGRPQYDSYGEGIIITGHSELRYYLSLMNQQLP 903 (1300)
Q Consensus 871 AGR~g~d~~G~~iil~~~~~~~~y~~ll~~~lP 903 (1300)
.-|.. +..|..+++-..-....|-+.+-..+|
T Consensus 877 lIRs~-~D~G~v~ilD~R~~~k~Yg~~~l~sLP 908 (928)
T PRK08074 877 LIRTE-TDRGTVFVLDRRLTTTSYGKYFLESLP 908 (928)
T ss_pred hcccC-CceEEEEEecCccccchHHHHHHHhCC
Confidence 99976 456877777666555566665555555
No 127
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.59 E-value=3.2e-14 Score=164.17 Aligned_cols=290 Identities=21% Similarity=0.285 Sum_probs=188.2
Q ss_pred CeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcccCCcEEEEEeCCCccc
Q 000756 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLT 591 (1300)
Q Consensus 512 ~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~~gi~V~~ltGd~~~~ 591 (1300)
+-++-+|||.||||.-| ++.+... .+.||--|.|-||.|+++++.+. |+.+..+||.....
T Consensus 192 kIi~H~GPTNSGKTy~A----Lqrl~~a-----------ksGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~ 252 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYRA----LQRLKSA-----------KSGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRF 252 (700)
T ss_pred eEEEEeCCCCCchhHHH----HHHHhhh-----------ccceecchHHHHHHHHHHHhhhc----CCCccccccceeee
Confidence 44778899999999765 4454442 24689999999999999988764 88999999975443
Q ss_pred hhh-hccceEEEECcchHHHHHhhcCCCcccccccEEEEeccccccc-CChhHHHHHHHHHHHHHhhccCCeeEEEEccc
Q 000756 592 RQQ-IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (1300)
Q Consensus 592 ~~~-~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~iv~rl~~~~~~~~~~~riV~LSAT 669 (1300)
... -..++.+-||-|... .-..+.+.||||+++|.| .||..+...+..+. ...+.+.|=-|-
T Consensus 253 ~~~~~~~a~hvScTVEM~s----------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~------AdEiHLCGepsv 316 (700)
T KOG0953|consen 253 VLDNGNPAQHVSCTVEMVS----------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLA------ADEIHLCGEPSV 316 (700)
T ss_pred cCCCCCcccceEEEEEEee----------cCCceEEEEehhHHhhcCcccchHHHHHHHhhh------hhhhhccCCchH
Confidence 321 234778889988532 334578999999999998 69988776554432 233444443333
Q ss_pred CCChHHHHHHHhccccCceEEecCCcccccceeeEeeeecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEEcChHHHHHH
Q 000756 670 LPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKT 749 (1300)
Q Consensus 670 lpn~~dva~~L~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~ 749 (1300)
++=.+++..-.+.. +....-.|-.||.. . +.+...+.. ...+.++| |-||++...+
T Consensus 317 ldlV~~i~k~TGd~-----vev~~YeRl~pL~v-----~------------~~~~~sl~n-lk~GDCvV-~FSkk~I~~~ 372 (700)
T KOG0953|consen 317 LDLVRKILKMTGDD-----VEVREYERLSPLVV-----E------------ETALGSLSN-LKPGDCVV-AFSKKDIFTV 372 (700)
T ss_pred HHHHHHHHhhcCCe-----eEEEeecccCccee-----h------------hhhhhhhcc-CCCCCeEE-EeehhhHHHH
Confidence 33222222222221 11111112222211 0 011111222 22444444 5578888877
Q ss_pred HHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHHHHHHHhC--CCccEEEec
Q 000756 750 ARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGD--GHVQVLVST 827 (1300)
Q Consensus 750 a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~--g~i~VLVaT 827 (1300)
...+...+. ..+++++|+|+++.|..--.+|.+ +..+|||||
T Consensus 373 k~kIE~~g~------------------------------------~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAs 416 (700)
T KOG0953|consen 373 KKKIEKAGN------------------------------------HKCAVIYGSLPPETRLAQAALFNDPSNECDVLVAS 416 (700)
T ss_pred HHHHHHhcC------------------------------------cceEEEecCCCCchhHHHHHHhCCCCCccceEEee
Confidence 777765431 347889999999999999999987 899999999
Q ss_pred cccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCCCCC-CceEEEEEeCCCcHHHHHHhhc
Q 000756 828 ATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD-SYGEGIIITGHSELRYYLSLMN 899 (1300)
Q Consensus 828 ~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d-~~G~~iil~~~~~~~~y~~ll~ 899 (1300)
++.++|+||.-.++|+..-..|+... ..+++..+..|.+|||||-|-. ..|.+..+. ..++....+.+.
T Consensus 417 DAIGMGLNL~IrRiiF~sl~Kysg~e--~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~-~eDL~~L~~~l~ 486 (700)
T KOG0953|consen 417 DAIGMGLNLNIRRIIFYSLIKYSGRE--TEDITVSQIKQIAGRAGRFGSKYPQGEVTTLH-SEDLKLLKRILK 486 (700)
T ss_pred cccccccccceeEEEEeecccCCccc--ceeccHHHHHHHhhcccccccCCcCceEEEee-HhhHHHHHHHHh
Confidence 99999999988888876666677543 5789999999999999997622 234433332 233444444443
No 128
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.58 E-value=4.7e-13 Score=163.22 Aligned_cols=127 Identities=13% Similarity=0.071 Sum_probs=99.9
Q ss_pred CCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhc
Q 000756 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1300)
Q Consensus 495 ~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l 574 (1300)
.++++|.-..-.++.+ -+..+.||+|||+++.++++..... +..|.+++|+--||.+-++.+...+
T Consensus 78 r~ydvQlig~l~Ll~G---~VaEM~TGEGKTLvA~l~a~l~AL~-----------G~~VhvvT~NdyLA~RDae~m~~ly 143 (764)
T PRK12326 78 RPFDVQLLGALRLLAG---DVIEMATGEGKTLAGAIAAAGYALQ-----------GRRVHVITVNDYLARRDAEWMGPLY 143 (764)
T ss_pred CcchHHHHHHHHHhCC---CcccccCCCCHHHHHHHHHHHHHHc-----------CCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 6778888888777655 3779999999999999988766554 3468899999999999999999999
Q ss_pred ccCCcEEEEEeCCCccch-hhhccceEEEECcchH--HHHHhhcC---CCcccccccEEEEeccccc
Q 000756 575 QMYDVKVRELSGDQTLTR-QQIEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLL 635 (1300)
Q Consensus 575 ~~~gi~V~~ltGd~~~~~-~~~~~~~IIV~TPekl--d~l~r~~~---~~~~l~~v~liIiDEaH~l 635 (1300)
..+|++|+.++++.+... +..-.++|+++|..-+ |.|..+.. +......+.+.|||||+.+
T Consensus 144 ~~LGLsvg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSi 210 (764)
T PRK12326 144 EALGLTVGWITEESTPEERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSV 210 (764)
T ss_pred HhcCCEEEEECCCCCHHHHHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhh
Confidence 999999999999876543 3345799999999884 55544331 2234456789999999965
No 129
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.58 E-value=4.8e-15 Score=168.05 Aligned_cols=365 Identities=18% Similarity=0.207 Sum_probs=216.5
Q ss_pred ccCCCCcccccCCCceEEeCCCCCCCCCCCCC--ccccCCCCChhhHhhcCCCCCCCHHHHHHHHHHHcCC--CeEEEEc
Q 000756 443 CDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNE--KLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSA--DNILLCA 518 (1300)
Q Consensus 443 ~~lp~~~~~~~~~~~eei~vP~~~~~~~~~~~--~l~~i~~Lp~~~~~~f~g~~~ln~iQ~~~i~~~l~~~--~nvLi~A 518 (1300)
+.+...+....++..-++..|......|..+. |-++|. ++.-..++|+|.+++...+.++ ..-+|+.
T Consensus 257 fei~~e~vE~vkkRCieidyPlLeEYDFRND~~npdl~id---------LKPst~iRpYQEksL~KMFGNgRARSGiIVL 327 (776)
T KOG1123|consen 257 FEIKQESVETVKKRCIEIDYPLLEEYDFRNDNVNPDLDID---------LKPSTQIRPYQEKSLSKMFGNGRARSGIIVL 327 (776)
T ss_pred eeecHHHHHHHHHhhhccCchhhhhhccccCCCCCCCCcC---------cCcccccCchHHHHHHHHhCCCcccCceEEE
Confidence 44444455555666666777765444332211 111221 2235678999999999998764 3578889
Q ss_pred cCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcccCCcEEEEEeCCCccchhhhccc
Q 000756 519 PTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEET 598 (1300)
Q Consensus 519 PTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~~gi~V~~ltGd~~~~~~~~~~~ 598 (1300)
|.|+|||++..-++.. + ..++|++|..---+.|+...|..+..--.-.++.+|.|..... -.++
T Consensus 328 PCGAGKtLVGvTAa~t-i-------------kK~clvLcts~VSVeQWkqQfk~wsti~d~~i~rFTsd~Ke~~--~~~~ 391 (776)
T KOG1123|consen 328 PCGAGKTLVGVTAACT-I-------------KKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFTSDAKERF--PSGA 391 (776)
T ss_pred ecCCCCceeeeeeeee-e-------------cccEEEEecCccCHHHHHHHHHhhcccCccceEEeeccccccC--CCCC
Confidence 9999999988655432 1 2368999999889999999987765433456888888765422 2578
Q ss_pred eEEEECcchHHHHHhhcC------CCcccccccEEEEeccccccc-CChhHHHHHHHHHHHHHhhccCCeeEEEEcccCC
Q 000756 599 QIIVTTPEKWDIITRKSG------DRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671 (1300)
Q Consensus 599 ~IIV~TPekld~l~r~~~------~~~~l~~v~liIiDEaH~l~d-~rg~~le~iv~rl~~~~~~~~~~~riV~LSATlp 671 (1300)
.|+|+|+..+..-.+++. +...-+..+++|+||+|.+-. .++.++..+-+ .++ +||+|||-
T Consensus 392 gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv~a-----------HcK-LGLTATLv 459 (776)
T KOG1123|consen 392 GVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIVQA-----------HCK-LGLTATLV 459 (776)
T ss_pred cEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHHHH-----------Hhh-ccceeEEe
Confidence 899999975422111111 111224568999999998754 33333332222 222 89999975
Q ss_pred ChH----H----------HHHHHhccccCceEEecCCcccccceeeEeeeec-CchhHH--HHHHHH----HHHHHHHHH
Q 000756 672 NYE----D----------VALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQV-KKPLQR--FQLMND----LCYEKVVAV 730 (1300)
Q Consensus 672 n~~----d----------va~~L~~~~~~~~~~f~~~~rpv~l~~~~~~~~~-~~~~~~--~~~~~~----~~~~~i~~~ 730 (1300)
..+ | -|.|+.......+..+.....-+|....|...-. .+..++ +..||. .|--.+.-+
T Consensus 460 REDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFraCqfLI~~H 539 (776)
T KOG1123|consen 460 REDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFRACQFLIKFH 539 (776)
T ss_pred eccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchhHHHHHHHHHH
Confidence 321 1 2456655433333333222222222211110000 000011 111221 111112112
Q ss_pred h-CCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHH
Q 000756 731 A-GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDR 809 (1300)
Q Consensus 731 ~-~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR 809 (1300)
. .+.++|||..+.-.....|.. .|--+++|..++.+|
T Consensus 540 E~RgDKiIVFsDnvfALk~YAik------------------------------------------l~KpfIYG~Tsq~ER 577 (776)
T KOG1123|consen 540 ERRGDKIIVFSDNVFALKEYAIK------------------------------------------LGKPFIYGPTSQNER 577 (776)
T ss_pred HhcCCeEEEEeccHHHHHHHHHH------------------------------------------cCCceEECCCchhHH
Confidence 1 367899998776543333322 233567999999999
Q ss_pred HHHHHHHh-CCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCCCCCC----ceEEEE
Q 000756 810 QLVEDLFG-DGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDS----YGEGII 884 (1300)
Q Consensus 810 ~~ve~~F~-~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d~----~G~~ii 884 (1300)
..|++.|. +..++.++-+.+...++|||..+|+|.-...| | |...-.||.||.-|+.... ....|.
T Consensus 578 m~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~----G-----SRRQEAQRLGRILRAKk~~de~fnafFYS 648 (776)
T KOG1123|consen 578 MKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHG----G-----SRRQEAQRLGRILRAKKRNDEEFNAFFYS 648 (776)
T ss_pred HHHHHhcccCCccceEEEeeccCccccCCcccEEEEEcccc----c-----chHHHHHHHHHHHHHhhcCccccceeeee
Confidence 99999998 45789999999999999999999999733333 2 6667899999988753211 234555
Q ss_pred EeCCCcHHHHH
Q 000756 885 ITGHSELRYYL 895 (1300)
Q Consensus 885 l~~~~~~~~y~ 895 (1300)
+++.+..+.|-
T Consensus 649 LVS~DTqEM~Y 659 (776)
T KOG1123|consen 649 LVSKDTQEMYY 659 (776)
T ss_pred eeecchHHHHh
Confidence 66666655544
No 130
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.55 E-value=3.7e-13 Score=168.19 Aligned_cols=133 Identities=20% Similarity=0.202 Sum_probs=99.1
Q ss_pred CCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHH
Q 000756 732 GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQL 811 (1300)
Q Consensus 732 ~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ 811 (1300)
.+.|+||||+|+..++.++..|...+.. ...+|+ .+.+|+.
T Consensus 597 ~grpVLIft~Sve~sE~Ls~~L~~~gI~-------------------------------------h~vLna--kq~~REa 637 (1025)
T PRK12900 597 KGQPVLVGTASVEVSETLSRMLRAKRIA-------------------------------------HNVLNA--KQHDREA 637 (1025)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCC-------------------------------------ceeecC--CHHHhHH
Confidence 4789999999999999999998876533 245576 5778999
Q ss_pred HHHHHhCCCccEEEeccccccccCCC---CcE-----EEEecceeccCCCCCcccCCHHHHHHhhhccCCCCCCCceEEE
Q 000756 812 VEDLFGDGHVQVLVSTATLAWGVNLP---AHT-----VIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883 (1300)
Q Consensus 812 ve~~F~~g~i~VLVaT~tla~GVdlP---av~-----vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d~~G~~i 883 (1300)
.+..|+.+...|+|||++++||+||+ .|. +||. +..+ -|...+.|++|||||.| .+|.++
T Consensus 638 ~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIg----terh------es~Rid~Ql~GRtGRqG--dpGsS~ 705 (1025)
T PRK12900 638 EIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILG----SERH------ESRRIDRQLRGRAGRQG--DPGESV 705 (1025)
T ss_pred HHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeC----CCCC------chHHHHHHHhhhhhcCC--CCcceE
Confidence 99999999999999999999999999 442 2343 2222 27778999999999988 899999
Q ss_pred EEeCCCcHH-------HHHHhh-----cCCCCcccchhHhHHHH
Q 000756 884 IITGHSELR-------YYLSLM-----NQQLPIESQFVSKLADQ 915 (1300)
Q Consensus 884 il~~~~~~~-------~y~~ll-----~~~lPiES~l~~~l~d~ 915 (1300)
.+.+..+.- ...+++ ....||++.+..+..+.
T Consensus 706 ffvSleD~Lmr~f~~~~i~~~~~~~~~~e~e~I~~~~i~k~ie~ 749 (1025)
T PRK12900 706 FYVSLEDELMRLFGSDRVISVMDRLGHEEGDVIEHSMITKSIER 749 (1025)
T ss_pred EEechhHHHHHhhCcHHHHHHHHHcCCCCCCcccchHHHHHHHH
Confidence 998875421 112222 23457777776654443
No 131
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.54 E-value=7e-13 Score=152.99 Aligned_cols=171 Identities=21% Similarity=0.279 Sum_probs=122.9
Q ss_pred CCeeEEEEcccCCChHHHHHHHhccccCceEEecCCcccccceeeEeeeecCchhHHHHHHHHHHHHHHHH-HhCCCeEE
Q 000756 659 EHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKHQVL 737 (1300)
Q Consensus 659 ~~~riV~LSATlpn~~dva~~L~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~vL 737 (1300)
...|+|.+|||..+++ +..- . -.....-.||..|-...+.+.... .+. .++ +..+.. ...+.++|
T Consensus 385 ~~~q~i~VSATPg~~E-~e~s------~-~~vveQiIRPTGLlDP~ievRp~~--~Qv---dDL-~~EI~~r~~~~eRvL 450 (663)
T COG0556 385 KIPQTIYVSATPGDYE-LEQS------G-GNVVEQIIRPTGLLDPEIEVRPTK--GQV---DDL-LSEIRKRVAKNERVL 450 (663)
T ss_pred hcCCEEEEECCCChHH-HHhc------c-CceeEEeecCCCCCCCceeeecCC--CcH---HHH-HHHHHHHHhcCCeEE
Confidence 3578999999965432 2211 1 012233456665544444333322 112 222 222333 33478999
Q ss_pred EEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHHHHHHHh
Q 000756 738 IFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFG 817 (1300)
Q Consensus 738 VFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~ 817 (1300)
|-+-|++.|+.+..+|.+.+ ..+.++|+.+..-+|..++...+
T Consensus 451 VTtLTKkmAEdLT~Yl~e~g-------------------------------------ikv~YlHSdidTlER~eIirdLR 493 (663)
T COG0556 451 VTTLTKKMAEDLTEYLKELG-------------------------------------IKVRYLHSDIDTLERVEIIRDLR 493 (663)
T ss_pred EEeehHHHHHHHHHHHHhcC-------------------------------------ceEEeeeccchHHHHHHHHHHHh
Confidence 99999999999999988765 34788999999999999999999
Q ss_pred CCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCCCCCCceEEEEEeCC
Q 000756 818 DGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (1300)
Q Consensus 818 ~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d~~G~~iil~~~ 888 (1300)
.|.+.|||.-+.|-.|+|+|.|..|.- .|..+.++ .-|-.+++|-+|||.|. -.|++|++...
T Consensus 494 ~G~~DvLVGINLLREGLDiPEVsLVAI----lDADKeGF-LRse~SLIQtIGRAARN---~~GkvIlYAD~ 556 (663)
T COG0556 494 LGEFDVLVGINLLREGLDLPEVSLVAI----LDADKEGF-LRSERSLIQTIGRAARN---VNGKVILYADK 556 (663)
T ss_pred cCCccEEEeehhhhccCCCcceeEEEE----eecCcccc-ccccchHHHHHHHHhhc---cCCeEEEEchh
Confidence 999999999999999999999998863 67665433 23778899999999995 68998888754
No 132
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.53 E-value=1.1e-13 Score=173.10 Aligned_cols=329 Identities=14% Similarity=0.050 Sum_probs=192.8
Q ss_pred ccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcccCCcEEEEEeCCCccchhh---
Q 000756 518 APTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ--- 594 (1300)
Q Consensus 518 APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~~gi~V~~ltGd~~~~~~~--- 594 (1300)
+.+|||||.+|+-.|-..+..+ ..+|+++|..+|+.|+..+|+++|+ +..|..++++.+...+.
T Consensus 167 ~~~GSGKTevyl~~i~~~l~~G-----------k~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w 233 (665)
T PRK14873 167 ALPGEDWARRLAAAAAATLRAG-----------RGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRW 233 (665)
T ss_pred cCCCCcHHHHHHHHHHHHHHcC-----------CeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHH
Confidence 3369999999999888887753 3699999999999999999999885 24688888876654332
Q ss_pred ----hccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccc--cCChhHHHHHHHHHHHHHhhccCCeeEEEEcc
Q 000756 595 ----IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH--DNRGPVLESIVARTVRQIETTKEHIRLVGLSA 668 (1300)
Q Consensus 595 ----~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~--d~rg~~le~iv~rl~~~~~~~~~~~riV~LSA 668 (1300)
.+...|+|+|-. .-+..+.++++|||||=|.-. ++++|.+..- -+........++.+|+.||
T Consensus 234 ~~~~~G~~~IViGtRS---------AvFaP~~~LgLIIvdEEhd~sykq~~~p~yhaR---dvA~~Ra~~~~~~lvLgSa 301 (665)
T PRK14873 234 LAVLRGQARVVVGTRS---------AVFAPVEDLGLVAIWDDGDDLLAEPRAPYPHAR---EVALLRAHQHGCALLIGGH 301 (665)
T ss_pred HHHhCCCCcEEEEcce---------eEEeccCCCCEEEEEcCCchhhcCCCCCCccHH---HHHHHHHHHcCCcEEEECC
Confidence 245789999933 334567889999999999643 3455554321 1111122356899999999
Q ss_pred cCCChHHHHHHHhccccCceEEecCC---cccccceeeEeeeecCc----hhHHHHHHHHHHHHHHHHHhCCCeEEEEEc
Q 000756 669 TLPNYEDVALFLRVNLEKGLFYFDNS---YRPVPLSQQYIGIQVKK----PLQRFQLMNDLCYEKVVAVAGKHQVLIFVH 741 (1300)
Q Consensus 669 Tlpn~~dva~~L~~~~~~~~~~f~~~---~rpv~l~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~ 741 (1300)
| |..+ .|..+.... ....... .+...-...+++..... ....-..+...+++.+.+....+|+|||+|
T Consensus 302 T-PSle---s~~~~~~g~-~~~~~~~~~~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~gqvll~ln 376 (665)
T PRK14873 302 A-RTAE---AQALVESGW-AHDLVAPRPVVRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHGPVLVQVP 376 (665)
T ss_pred C-CCHH---HHHHHhcCc-ceeeccccccccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcCcEEEEec
Confidence 9 5543 333332111 1111111 11111112333322100 000001144456666776666459999999
Q ss_pred ChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhc---------ccc--------------hhhhhhhcCCeE
Q 000756 742 SRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDM---------VKS--------------NDLKDLLPYGFA 798 (1300)
Q Consensus 742 sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~---------~~~--------------~~L~~ll~~gv~ 798 (1300)
.|.-+-.+...=|.....+..+...+..+.......|.+|+. |.+ ..|+.+++ ++.
T Consensus 377 RrGyap~l~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP-~~~ 455 (665)
T PRK14873 377 RRGYVPSLACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFP-GVP 455 (665)
T ss_pred CCCCCCeeEhhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCC-CCC
Confidence 998776655554444444444443333322222222333322 211 23444444 122
Q ss_pred EecCCCCHHHHHHHHHHHhCCCccEEEecc----ccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCC
Q 000756 799 IHHAGMTRGDRQLVEDLFGDGHVQVLVSTA----TLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRP 874 (1300)
Q Consensus 799 ~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~----tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~ 874 (1300)
+ -+.|++.+++.|. ++..|||+|. .++-|+ ...+|++.+.....+.-+-.+-...-++|-+|||||.
T Consensus 456 V-----~r~d~d~~l~~~~-~~~~IlVGTqgaepm~~g~~---~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~ 526 (665)
T PRK14873 456 V-----VTSGGDQVVDTVD-AGPALVVATPGAEPRVEGGY---GAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPR 526 (665)
T ss_pred E-----EEEChHHHHHhhc-cCCCEEEECCCCcccccCCc---eEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCC
Confidence 2 2334556888897 5999999998 666222 2223444443333333344455677889999999996
Q ss_pred CCCCceEEEEEeCC
Q 000756 875 QYDSYGEGIIITGH 888 (1300)
Q Consensus 875 g~d~~G~~iil~~~ 888 (1300)
. +.|+++|.+.+
T Consensus 527 ~--~~G~V~iq~~p 538 (665)
T PRK14873 527 A--DGGQVVVVAES 538 (665)
T ss_pred C--CCCEEEEEeCC
Confidence 4 78999998643
No 133
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.51 E-value=1.8e-12 Score=159.33 Aligned_cols=279 Identities=20% Similarity=0.244 Sum_probs=170.9
Q ss_pred CCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhc
Q 000756 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1300)
Q Consensus 495 ~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l 574 (1300)
.|...|.--...++.+ ++.-+.||||.|||+-.++..+-...+ +.+++||+||..|+.|.+++++++.
T Consensus 82 ~~ws~QR~WakR~~rg-~SFaiiAPTGvGKTTfg~~~sl~~a~k-----------gkr~yii~PT~~Lv~Q~~~kl~~~~ 149 (1187)
T COG1110 82 RPWSAQRVWAKRLVRG-KSFAIIAPTGVGKTTFGLLMSLYLAKK-----------GKRVYIIVPTTTLVRQVYERLKKFA 149 (1187)
T ss_pred CchHHHHHHHHHHHcC-CceEEEcCCCCchhHHHHHHHHHHHhc-----------CCeEEEEecCHHHHHHHHHHHHHHH
Confidence 8899999888888876 669999999999998766555443322 4589999999999999999999876
Q ss_pred ccCC-cEEEE-EeCCCccchh-----h--hccceEEEECcchHHHHHhhcCCCcccccccEEEEeccccccc-CC-----
Q 000756 575 QMYD-VKVRE-LSGDQTLTRQ-----Q--IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NR----- 639 (1300)
Q Consensus 575 ~~~g-i~V~~-ltGd~~~~~~-----~--~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d-~r----- 639 (1300)
...| ..+.. .+|..+...+ . .++.+|+|+|.. .+.++...... -++++|++|.++.+.- .+
T Consensus 150 e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~---FL~k~~e~L~~-~kFdfifVDDVDA~LkaskNvDri 225 (1187)
T COG1110 150 EDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQ---FLSKRFEELSK-LKFDFIFVDDVDAILKASKNVDRL 225 (1187)
T ss_pred hhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHH---HHHhhHHHhcc-cCCCEEEEccHHHHHhccccHHHH
Confidence 5443 33322 5565433221 1 246899999987 34433321111 2589999999997632 11
Q ss_pred -------hhHHHHH--HHHHHHHHh---------------------hccCCeeEEEEcccCCChH----HHHHHHhcccc
Q 000756 640 -------GPVLESI--VARTVRQIE---------------------TTKEHIRLVGLSATLPNYE----DVALFLRVNLE 685 (1300)
Q Consensus 640 -------g~~le~i--v~rl~~~~~---------------------~~~~~~riV~LSATlpn~~----dva~~L~~~~~ 685 (1300)
..+++.. +.++.+... ...+.-++|..|||..... -+...|+...
T Consensus 226 L~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFev- 304 (1187)
T COG1110 226 LRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFEV- 304 (1187)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCCcc-
Confidence 1111111 111111110 1234568899999975432 3444444332
Q ss_pred CceEEecCCcccccceeeEeeeecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEEcC---hHHHHHHHHHHHHHhhcccc
Q 000756 686 KGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHS---RKETAKTARAIRDTALENDT 762 (1300)
Q Consensus 686 ~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~s---r~~~~~~a~~L~~~~~~~~~ 762 (1300)
......+...+-.........+ +.+.+ ... +.-.||||+. +..++.++..|+..+.+
T Consensus 305 --------G~~~~~LRNIvD~y~~~~~~e~-------~~elv-k~l-G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~--- 364 (1187)
T COG1110 305 --------GSGGEGLRNIVDIYVESESLEK-------VVELV-KKL-GDGGLIFVPIDYGREKAEELAEYLRSHGIN--- 364 (1187)
T ss_pred --------CccchhhhheeeeeccCccHHH-------HHHHH-HHh-CCCeEEEEEcHHhHHHHHHHHHHHHhcCce---
Confidence 2221112111111111111111 11112 222 4578999999 88888888888876533
Q ss_pred cccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEecc----ccccccCCCC
Q 000756 763 LGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTA----TLAWGVNLPA 838 (1300)
Q Consensus 763 l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~----tla~GVdlPa 838 (1300)
+..+|++ ....++.|..|+++|||..+ ++.+|+|+|.
T Consensus 365 ----------------------------------a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~ 405 (1187)
T COG1110 365 ----------------------------------AELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPH 405 (1187)
T ss_pred ----------------------------------EEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchh
Confidence 3445663 36778999999999999874 7999999997
Q ss_pred -cEEEEecceeccCCC
Q 000756 839 -HTVIIKGTQIYNPEK 853 (1300)
Q Consensus 839 -v~vVI~~t~~yd~~~ 853 (1300)
++++| +|..|+
T Consensus 406 rirYaI----F~GvPk 417 (1187)
T COG1110 406 RIRYAV----FYGVPK 417 (1187)
T ss_pred heeEEE----EecCCc
Confidence 45555 366664
No 134
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.50 E-value=5.3e-12 Score=157.70 Aligned_cols=127 Identities=17% Similarity=0.149 Sum_probs=96.5
Q ss_pred CCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhc
Q 000756 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1300)
Q Consensus 495 ~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l 574 (1300)
.+.++|--.--. ++.+ -|.-+.||+|||+++.+|++-.... +..|.+++|+.-||.+-+..+...+
T Consensus 82 ~~ydVQliGg~~-Lh~G--~iaEM~TGEGKTLvA~l~a~l~al~-----------G~~VhvvT~ndyLA~RD~e~m~~l~ 147 (913)
T PRK13103 82 RHFDVQLIGGMT-LHEG--KIAEMRTGEGKTLVGTLAVYLNALS-----------GKGVHVVTVNDYLARRDANWMRPLY 147 (913)
T ss_pred CcchhHHHhhhH-hccC--ccccccCCCCChHHHHHHHHHHHHc-----------CCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 455666654433 3333 4889999999999999998765544 3458889999999999999999999
Q ss_pred ccCCcEEEEEeCCCccch-hhhccceEEEECcchH--HHHHhhcC---CCcccccccEEEEeccccc
Q 000756 575 QMYDVKVRELSGDQTLTR-QQIEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLL 635 (1300)
Q Consensus 575 ~~~gi~V~~ltGd~~~~~-~~~~~~~IIV~TPekl--d~l~r~~~---~~~~l~~v~liIiDEaH~l 635 (1300)
..+|++|+.++|+..... +..-.++|+++|..-+ |.|..+.. .......+.++||||+|.+
T Consensus 148 ~~lGl~v~~i~~~~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsi 214 (913)
T PRK13103 148 EFLGLSVGIVTPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSI 214 (913)
T ss_pred cccCCEEEEECCCCCHHHHHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhhe
Confidence 999999999999876543 3345699999999874 55544321 2234577899999999976
No 135
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.45 E-value=9.7e-13 Score=132.82 Aligned_cols=141 Identities=29% Similarity=0.368 Sum_probs=101.9
Q ss_pred CeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcccCCcEEEEEeCCCccc
Q 000756 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLT 591 (1300)
Q Consensus 512 ~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~~gi~V~~ltGd~~~~ 591 (1300)
+++++++|||+|||.+++..+.+....+ ...+++|++|++.++.++...+...+.. ++.+..+.+.....
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~---------~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 70 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL---------KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIK 70 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc---------cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchh
Confidence 3689999999999999999888877652 1347999999999999999999887654 67788777765544
Q ss_pred hhh---hccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEEcc
Q 000756 592 RQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSA 668 (1300)
Q Consensus 592 ~~~---~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LSA 668 (1300)
... ....+|+++|++.+........ .....++++||||+|.+......... ...........+++++||
T Consensus 71 ~~~~~~~~~~~i~i~t~~~~~~~~~~~~--~~~~~~~~iiiDE~h~~~~~~~~~~~------~~~~~~~~~~~~~i~~sa 142 (144)
T cd00046 71 QQEKLLSGKTDIVVGTPGRLLDELERLK--LSLKKLDLLILDEAHRLLNQGFGLLG------LKILLKLPKDRQVLLLSA 142 (144)
T ss_pred HHHHHhcCCCCEEEECcHHHHHHHHcCC--cchhcCCEEEEeCHHHHhhcchHHHH------HHHHhhCCccceEEEEec
Confidence 322 4678999999997643333322 23556889999999998753211110 111122456788999999
Q ss_pred cC
Q 000756 669 TL 670 (1300)
Q Consensus 669 Tl 670 (1300)
|+
T Consensus 143 Tp 144 (144)
T cd00046 143 TP 144 (144)
T ss_pred cC
Confidence 94
No 136
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.43 E-value=6.6e-13 Score=159.55 Aligned_cols=421 Identities=17% Similarity=0.140 Sum_probs=248.8
Q ss_pred HHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcccCCcEEEEE
Q 000756 505 KSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVREL 584 (1300)
Q Consensus 505 ~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~~gi~V~~l 584 (1300)
-.+...++.++|-+.||+|||..+...||..+..+.. | ..+-+++-.|++..+..+++++..--. -.++..
T Consensus 387 ~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~--g----~~~na~v~qprrisaisiaerva~er~---e~~g~t 457 (1282)
T KOG0921|consen 387 LQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSN--G----ASFNAVVSQPRRISAISLAERVANERG---EEVGET 457 (1282)
T ss_pred HHHHhcCceeeEeecccccchhHHHHHHHHHHhhccc--c----ccccceeccccccchHHHHHHHHHhhH---Hhhccc
Confidence 3445567889999999999999999999999887633 2 235688899999999999988864322 222222
Q ss_pred eCCCccchh--hhccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCee
Q 000756 585 SGDQTLTRQ--QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIR 662 (1300)
Q Consensus 585 tGd~~~~~~--~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~r 662 (1300)
.|-...-.. ....--|.+||-+ .+.|..- .-+..+.++|+||+|+.. +...++..+++-+..+...++
T Consensus 458 vgy~vRf~Sa~prpyg~i~fctvg---vllr~~e--~glrg~sh~i~deiherd-----v~~dfll~~lr~m~~ty~dl~ 527 (1282)
T KOG0921|consen 458 CGYNVRFDSATPRPYGSIMFCTVG---VLLRMME--NGLRGISHVIIDEIHERD-----VDTDFVLIVLREMISTYRDLR 527 (1282)
T ss_pred ccccccccccccccccceeeeccc---hhhhhhh--hcccccccccchhhhhhc-----cchHHHHHHHHhhhccchhhh
Confidence 232111111 1123458899998 5666553 355678999999999842 233344444555556778899
Q ss_pred EEEEcccCCChHHHHHHHhccccCce------------------------------EEecCCccccccee--e-Eeeeec
Q 000756 663 LVGLSATLPNYEDVALFLRVNLEKGL------------------------------FYFDNSYRPVPLSQ--Q-YIGIQV 709 (1300)
Q Consensus 663 iV~LSATlpn~~dva~~L~~~~~~~~------------------------------~~f~~~~rpv~l~~--~-~~~~~~ 709 (1300)
++++|||+ |..-+..|++.-+...+ ..|+..+.+.+... . +-+...
T Consensus 528 v~lmsatI-dTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~d 606 (1282)
T KOG0921|consen 528 VVLMSATI-DTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCD 606 (1282)
T ss_pred hhhhhccc-chhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccC
Confidence 99999998 44566666664332100 00011111100000 0 000000
Q ss_pred Cchh-HHHHHHHH--------HHHHHHHHHh----CCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHH
Q 000756 710 KKPL-QRFQLMND--------LCYEKVVAVA----GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREI 776 (1300)
Q Consensus 710 ~~~~-~~~~~~~~--------~~~~~i~~~~----~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~ 776 (1300)
.... ....+|.. -+.+++.... -.+-++||.+.......+..+|......
T Consensus 607 d~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~f----------------- 669 (1282)
T KOG0921|consen 607 PSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEF----------------- 669 (1282)
T ss_pred hhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhh-----------------
Confidence 0000 00000100 0111121111 1567999999999988888877654321
Q ss_pred HHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccC--CC-
Q 000756 777 LQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNP--EK- 853 (1300)
Q Consensus 777 l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~--~~- 853 (1300)
+++-.+.+...|+.+...++..|.+....|..+++++|.++...+.+-+++.||.....|-. .+
T Consensus 670 -------------g~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~ 736 (1282)
T KOG0921|consen 670 -------------GQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSH 736 (1282)
T ss_pred -------------ccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccc
Confidence 12223456667999999999999999999999999999999999999998888764333211 11
Q ss_pred -----CCcccCCHHHHHHhhhccCCCCCCCceEEEEEeCCCcHHHHHHhhcCCCCcccchhHhHHHHHHHHHHhccccCH
Q 000756 854 -----GAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNA 928 (1300)
Q Consensus 854 -----g~~~~~S~~d~lQr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~lPiES~l~~~l~d~lnaEI~~g~i~~~ 928 (1300)
-..++.|.....||.||+||. +.|.|..+|+.-..+.+..-. ...+..+...|+.+-. .
T Consensus 737 nn~~~~Atvw~sktn~eqr~gr~grv---R~G~~f~lcs~arF~~l~~~~----------t~em~r~plhemalTi-k-- 800 (1282)
T KOG0921|consen 737 NNMTHYATVWASKTNLEQRKGRAGRV---RPGFCFHLCSRARFEALEDHG----------TAEMFRTPLHEIALTI-K-- 800 (1282)
T ss_pred cceeeeeeecccccchHhhcccCcee---cccccccccHHHHHHHHHhcC----------cHhhhcCccHHHHhhH-H--
Confidence 124788999999999999996 689999998765444332211 1111111222222100 0
Q ss_pred HHHHHHHHhhHHHHHHhcCCcccCCCccccccchhhhhHHHHHHHHHHHHHHHCCCccccccCCceeecccccccccccc
Q 000756 929 KEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYI 1008 (1300)
Q Consensus 929 ~d~~~wL~~T~ly~r~~~nP~~y~~~~~~~~~~~~l~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~ias~~yi 1008 (1300)
.| -...++++. ...|.++..+.|..+-..|...++.+.+ ..+|+||+..++.+|
T Consensus 801 -----ll--~l~SI~~fl--------------~kal~~~p~dav~e~e~~l~~m~~ld~n-----~elt~lg~~la~l~i 854 (1282)
T KOG0921|consen 801 -----LL--RLGSIGEFL--------------GKALQPPPYDAVIEAEAVLREMGALDAN-----DELTPLGRMLARLPI 854 (1282)
T ss_pred -----HH--HhhhHHHHH--------------hhccCCCchhhccCchHHHHHhhhhhcc-----CcccchhhhhhhccC
Confidence 00 000111111 0123333444555555566666766543 348999999999999
Q ss_pred ccccHHHHH
Q 000756 1009 SHGTISTYN 1017 (1300)
Q Consensus 1009 ~~~T~~~~~ 1017 (1300)
.+.-.+.+.
T Consensus 855 ep~~~k~~~ 863 (1282)
T KOG0921|consen 855 EPRIGKMMI 863 (1282)
T ss_pred cccccceee
Confidence 988776654
No 137
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.41 E-value=7.1e-11 Score=146.09 Aligned_cols=60 Identities=27% Similarity=0.319 Sum_probs=49.9
Q ss_pred HHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhc
Q 000756 506 SALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1300)
Q Consensus 506 ~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l 574 (1300)
.++..+..+++.||||+|||++|++|++..+... .+.++||++||++|+.|+++.+....
T Consensus 11 ~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~---------~~~rvlIstpT~~Lq~Ql~~~l~~l~ 70 (636)
T TIGR03117 11 TSLRQKRIGMLEASTGVGKTLAMIMAALTMLKER---------PDQKIAIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred HHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc---------cCceEEEECCcHHHHHHHHHHHHHHH
Confidence 3456677899999999999999999998876532 13589999999999999999877654
No 138
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.40 E-value=1.7e-12 Score=138.54 Aligned_cols=150 Identities=24% Similarity=0.301 Sum_probs=98.1
Q ss_pred CCCHHHHHHHHHHHc------CCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHH
Q 000756 495 QLNRVQSRVYKSALS------SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVG 568 (1300)
Q Consensus 495 ~ln~iQ~~~i~~~l~------~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~ 568 (1300)
+|+++|.+++..+.. ...++++.||||||||.++...+.+... ++++++|++.|+.|+..
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~--------------~~l~~~p~~~l~~Q~~~ 68 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR--------------KVLIVAPNISLLEQWYD 68 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC--------------EEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc--------------ceeEecCHHHHHHHHHH
Confidence 579999999999874 2578999999999999999876665542 69999999999999999
Q ss_pred HHhhhcccCCcEEEEEe------------CCCccch---hhhccceEEEECcchHHHHHhhcC---------CCcccccc
Q 000756 569 NLSNRLQMYDVKVRELS------------GDQTLTR---QQIEETQIIVTTPEKWDIITRKSG---------DRTYTQLV 624 (1300)
Q Consensus 569 ~~~~~l~~~gi~V~~lt------------Gd~~~~~---~~~~~~~IIV~TPekld~l~r~~~---------~~~~l~~v 624 (1300)
.|....... ..+.... ....... ......+++++|..+|....+... ........
T Consensus 69 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (184)
T PF04851_consen 69 EFDDFGSEK-YNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKF 147 (184)
T ss_dssp HHHHHSTTS-EEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSE
T ss_pred HHHHhhhhh-hhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccC
Confidence 995443321 1111110 0011111 113467899999999855544321 11234567
Q ss_pred cEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEEcccC
Q 000756 625 KLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670 (1300)
Q Consensus 625 ~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LSATl 670 (1300)
++||+||||+...... +..++. .....+|+||||.
T Consensus 148 ~~vI~DEaH~~~~~~~--~~~i~~---------~~~~~~l~lTATp 182 (184)
T PF04851_consen 148 DLVIIDEAHHYPSDSS--YREIIE---------FKAAFILGLTATP 182 (184)
T ss_dssp SEEEEETGGCTHHHHH--HHHHHH---------SSCCEEEEEESS-
T ss_pred CEEEEehhhhcCCHHH--HHHHHc---------CCCCeEEEEEeCc
Confidence 8999999999753211 222222 5677899999995
No 139
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.39 E-value=2e-12 Score=129.84 Aligned_cols=105 Identities=33% Similarity=0.509 Sum_probs=91.1
Q ss_pred CCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHH
Q 000756 732 GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQL 811 (1300)
Q Consensus 732 ~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ 811 (1300)
.++++||||+++..++.++..|.+. ..++.++||+++..+|..
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~-------------------------------------~~~~~~~~~~~~~~~~~~ 69 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKP-------------------------------------GIKVAALHGDGSQEEREE 69 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhc-------------------------------------CCcEEEEECCCCHHHHHH
Confidence 4789999999999999999888651 146889999999999999
Q ss_pred HHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCCCCCCceEEEEE
Q 000756 812 VEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885 (1300)
Q Consensus 812 ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d~~G~~iil 885 (1300)
+.+.|.+|..+||+||.++++|+|+|..++||. ++++. +..+++|++||+||.| ..|.++++
T Consensus 70 ~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~----~~~~~------~~~~~~Q~~GR~~R~~--~~~~~~~~ 131 (131)
T cd00079 70 VLKDFREGEIVVLVATDVIARGIDLPNVSVVIN----YDLPW------SPSSYLQRIGRAGRAG--QKGTAILL 131 (131)
T ss_pred HHHHHHcCCCcEEEEcChhhcCcChhhCCEEEE----eCCCC------CHHHheecccccccCC--CCceEEeC
Confidence 999999999999999999999999999888885 55543 7889999999999988 47777653
No 140
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.36 E-value=1.5e-12 Score=119.01 Aligned_cols=73 Identities=36% Similarity=0.578 Sum_probs=67.4
Q ss_pred hcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccC
Q 000756 793 LPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAG 872 (1300)
Q Consensus 793 l~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAG 872 (1300)
..+.+.++||+++..+|..+++.|.+|..+|||||+++++|||+|.+++||. |+++. ++.+|.|++||+|
T Consensus 6 ~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~----~~~~~------~~~~~~Q~~GR~~ 75 (78)
T PF00271_consen 6 KGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIF----YDPPW------SPEEYIQRIGRAG 75 (78)
T ss_dssp TTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEE----SSSES------SHHHHHHHHTTSS
T ss_pred CCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccc----cccCC------CHHHHHHHhhcCC
Confidence 3467899999999999999999999999999999999999999999999997 66654 8999999999999
Q ss_pred CCC
Q 000756 873 RPQ 875 (1300)
Q Consensus 873 R~g 875 (1300)
|.|
T Consensus 76 R~g 78 (78)
T PF00271_consen 76 RIG 78 (78)
T ss_dssp TTT
T ss_pred CCC
Confidence 975
No 141
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.36 E-value=3.6e-10 Score=144.29 Aligned_cols=144 Identities=19% Similarity=0.265 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcC
Q 000756 716 FQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPY 795 (1300)
Q Consensus 716 ~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~ 795 (1300)
...+.+.+...+. . ++.+|||++|.+..+.++..|.... . +
T Consensus 520 ~~~~~~~i~~l~~--~-~gg~LVlFtSy~~l~~v~~~l~~~~-~-----------------------------------~ 560 (697)
T PRK11747 520 TAEMAEFLPELLE--K-HKGSLVLFASRRQMQKVADLLPRDL-R-----------------------------------L 560 (697)
T ss_pred HHHHHHHHHHHHh--c-CCCEEEEeCcHHHHHHHHHHHHHhc-C-----------------------------------C
Confidence 3444444444333 3 3458999999999998888776421 0 1
Q ss_pred CeEEecCCCCHHHHHHHHHHHh----CCCccEEEeccccccccCCCC--cEEEEecceeccCCCC---------------
Q 000756 796 GFAIHHAGMTRGDRQLVEDLFG----DGHVQVLVSTATLAWGVNLPA--HTVIIKGTQIYNPEKG--------------- 854 (1300)
Q Consensus 796 gv~~~Hagl~~~dR~~ve~~F~----~g~i~VLVaT~tla~GVdlPa--v~vVI~~t~~yd~~~g--------------- 854 (1300)
.+. .++. ..|..+++.|+ .|.-.||++|..+..|||+|+ .+.||-...+|.++..
T Consensus 561 ~ll-~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~ 636 (697)
T PRK11747 561 MLL-VQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGG 636 (697)
T ss_pred cEE-EeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcC
Confidence 122 2332 24566776665 467789999999999999997 4555555556654431
Q ss_pred -CcccC----CHHHHHHhhhccCCCCCCCceEEEEEeCCCcHHHHHHhhcCCCC
Q 000756 855 -AWTEL----SPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLP 903 (1300)
Q Consensus 855 -~~~~~----S~~d~lQr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~lP 903 (1300)
.|..+ ....+.|.+||.-|.. +..|..+++-..-....|-+.+-+.+|
T Consensus 637 ~~F~~~~lP~A~~kl~Qg~GRlIRs~-~D~G~i~ilD~R~~~~~Yg~~~l~sLP 689 (697)
T PRK11747 637 NPFMEISVPDASFKLIQAVGRLIRSE-QDRGRVTILDRRLLTKRYGKRLLDALP 689 (697)
T ss_pred CcHHHHHHHHHHHHHHHHhccccccC-CceEEEEEEcccccchhHHHHHHHhCC
Confidence 12222 3456789999999975 457877777665444556554444555
No 142
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.36 E-value=7.8e-11 Score=151.20 Aligned_cols=199 Identities=19% Similarity=0.224 Sum_probs=114.8
Q ss_pred eEEEEcccCCChHHHHHHHhccccCceEEecCCcccccce---eeEeeeecCchh--HHHHHHHHHHHHHHHHHhCCCeE
Q 000756 662 RLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLS---QQYIGIQVKKPL--QRFQLMNDLCYEKVVAVAGKHQV 736 (1300)
Q Consensus 662 riV~LSATlpn~~dva~~L~~~~~~~~~~f~~~~rpv~l~---~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~v 736 (1300)
.+|++||||.....+..+++.......+.+-.-..|.+.. ..+++....... .....+...+...+... ++.+
T Consensus 405 ~~vl~SaTL~~~~~f~~~~~~~~~~~~~~~~~~~spf~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~ 482 (654)
T COG1199 405 SVVLTSATLSPLDSFSSLLGLLGLEEKLRFLSLPSPFNYEEQGQLYVPTDLPEPREPELLAKLAAYLREILKAS--PGGV 482 (654)
T ss_pred cEEEeeeeccCCCcHHHHHHHcCCccccceeccCCCCChhhcceEeccccCCCCCChHHHHHHHHHHHHHHhhc--CCCE
Confidence 5799999998877777777765332222111111111111 122222111111 22233333333322222 4589
Q ss_pred EEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHHHHHHH
Q 000756 737 LIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLF 816 (1300)
Q Consensus 737 LVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F 816 (1300)
|||++|......++..+...... + ....++.-+ +..+++.|
T Consensus 483 lvlF~Sy~~l~~~~~~~~~~~~~---~---------------------------------~v~~q~~~~---~~~~l~~f 523 (654)
T COG1199 483 LVLFPSYEYLKRVAERLKDERST---L---------------------------------PVLTQGEDE---REELLEKF 523 (654)
T ss_pred EEEeccHHHHHHHHHHHhhcCcc---c---------------------------------eeeecCCCc---HHHHHHHH
Confidence 99999999999888887654311 0 112244433 33556666
Q ss_pred hCCC-ccEEEeccccccccCCCCc---EEEEecceeccCCCC----------------Cc----ccCCHHHHHHhhhccC
Q 000756 817 GDGH-VQVLVSTATLAWGVNLPAH---TVIIKGTQIYNPEKG----------------AW----TELSPLDIMQMLGRAG 872 (1300)
Q Consensus 817 ~~g~-i~VLVaT~tla~GVdlPav---~vVI~~t~~yd~~~g----------------~~----~~~S~~d~lQr~GRAG 872 (1300)
..+. .-++|+|..++.|||+|+- .|||. ..+|-.+.. .| .+.....+.|.+||+-
T Consensus 524 ~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~-~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlI 602 (654)
T COG1199 524 KASGEGLILVGGGSFWEGVDFPGDALRLVVIV-GLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLI 602 (654)
T ss_pred HHhcCCeEEEeeccccCcccCCCCCeeEEEEE-ecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhcccc
Confidence 5443 3899999999999999985 34554 444442221 11 2235568899999999
Q ss_pred CCCCCCceEEEEEeCCCcHHHHHHhhcCCCC
Q 000756 873 RPQYDSYGEGIIITGHSELRYYLSLMNQQLP 903 (1300)
Q Consensus 873 R~g~d~~G~~iil~~~~~~~~y~~ll~~~lP 903 (1300)
|. .+..|..+++-..-....|.+.+...+|
T Consensus 603 R~-~~D~G~ivllD~R~~~~~y~~~l~~~l~ 632 (654)
T COG1199 603 RS-EDDRGVIVLLDKRYATKRYGKLLLDSLP 632 (654)
T ss_pred cc-CCCceEEEEecccchhhhHHHHHHHhCC
Confidence 95 4678888888776665557776665555
No 143
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.34 E-value=7.3e-12 Score=140.72 Aligned_cols=262 Identities=13% Similarity=0.084 Sum_probs=191.6
Q ss_pred ccccccHHHHHhhcCCCCChHHHHHHhcCCcccccCcCCchHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHhCcC
Q 000756 1007 YISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLK 1086 (1300)
Q Consensus 1007 yi~~~T~~~~~~~l~~~~~~~~il~ils~s~EF~~i~vR~~E~~eL~~L~~~~p~pvk~~~~~~~~Kv~iLLQa~isr~~ 1086 (1300)
.|.+.||.+|...+....+..++|.+||.|.||..+. | ..|..-..-|||.||.|.+
T Consensus 226 gvh~vT~~~f~~~~~~SlTlDelLslfasskElt~~~------------------p-----k~pk~~~ekll~dhlnr~~ 282 (610)
T COG5407 226 GVHFVTMEMFYERIDGSLTLDELLSLFASSKELTRMN------------------P-----KGPKCTLEKLLGDHLNRAR 282 (610)
T ss_pred ceeeeeHHHHHHhhcccchHHHHHHHHhhhHHHHHhC------------------C-----CCCchhHHHHHHHHHhHhh
Confidence 4667899999999999999999999999999997762 1 2333445669999999987
Q ss_pred CCCCcchhhHHHHHHhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHhcccCC-ccccccccCCCHHHHHHHHhCCC-c
Q 000756 1087 LEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSV-QTPLRQFNGIPNEILMKLEKKDF-A 1164 (1300)
Q Consensus 1087 l~~~~L~~D~~~I~q~a~RLlral~eI~~~~g~~~~a~~~l~L~k~i~q~~W~~-~~pL~Q~p~i~~~~i~~le~~~~-~ 1164 (1300)
-..|. ...|..++.-|+.||..|+...+++..+...+++-|||+|++..+ ..|+.|+|+...+.++++.-+.+ +
T Consensus 283 s~~fn----~~ri~s~~~~ll~aLL~ia~~F~f~~~~~g~~n~~q~iVqAiPld~~f~ilQlp~~d~E~~~~~s~r~I~~ 358 (610)
T COG5407 283 SVEFN----EYRIKSNVEGLLGALLRIASNFAFPLKECGKENKGQYIVQAIPLDHLFRILQLPRSDVEYAQRVSLRLIEG 358 (610)
T ss_pred cccch----heehhhhhHHHHHHHHHHHhhccCCchhhccchhhheeeEeccCCCCchhhcccchhHHHHHHhhhhhhhh
Confidence 65555 567899999999999999999999999999999999999999986 68999999999999988887777 7
Q ss_pred chhhccCChHHHhhhhcCCc--chHHHHHHHhcCCceeEEEE-E-ee----ec-CceEEEEEEEe---------------
Q 000756 1165 WERYYDLSPQELGELIRFPK--MGRTLHKFVHQFPKLILAAH-V-QP----IT-RTVLKVELTIT--------------- 1220 (1300)
Q Consensus 1165 ~~~l~~l~~~el~~ll~~~~--~g~~i~~~~~~~P~l~v~~~-v-qp----it-~~~l~v~l~i~--------------- 1220 (1300)
+..+..|..++.++.+.+-. ..+.+.+.++.+|++.+-.. + .| || ++.-+|.+...
T Consensus 359 ~~~~~sL~~~~~g~vl~n~~~~~l~e~~~va~gIPr~~~~~a~flv~~d~~it~~s~~~vslk~~~g~~~~pe~~ts~~~ 438 (610)
T COG5407 359 MKAIGSLIAKRYGNVLKNLVVLELMEIQAVADGIPRYFLLQAPFLVFEDLFITEKSKERVSLKGYLGAIPGPEHRTSALN 438 (610)
T ss_pred hhhHhhHHHHHHhhhhhhHHHHHHHHHHHHhcCCCceEEEecceeecccceecccceeeEEEEEEeccccCCcccccccc
Confidence 88999999999999987542 44788999999999887432 1 01 22 22333433320
Q ss_pred --------------------------cCCccCCCCccc-cccEEEEEEcCCCCeEEEEeEEEeeecc-ccceEEEEEEEe
Q 000756 1221 --------------------------PDFLWDDKVHGY-VEPFWVIVEDNDGEYILHHEYFMLKKQY-IEEDHSLNFTVP 1272 (1300)
Q Consensus 1221 --------------------------~~~~w~~~~h~~-~e~~wi~v~D~~~~~il~~~~~~l~~~~-~~~~~~l~F~vp 1272 (1300)
-+..|.+.+... .-.|||.|.++.++.++ .+.++++-.. .-.+..++|.||
T Consensus 439 ~~n~~e~~dfe~~~~~~~ai~~d~~~~pys~Ap~f~t~~~~~w~~~v~~~~Qt~~I-ip~~Si~~v~K~~~d~Ri~~dv~ 517 (610)
T COG5407 439 VYNQVEISDFEASVIETGAIKNDSSDSPYSEAPDFATRNDSEWAVRVAKCEQTVYI-IPGGSIATVSKVTLDRRIQGDVA 517 (610)
T ss_pred cccccChHHHhhhccCccccccCCCCCCcccCcccccccCcceEEEeeccccceEE-eCCccccccchhhhhcccccccC
Confidence 011122222111 12299999999987664 4444443321 123456677776
Q ss_pred cCCCCCceEEEEEEecCccccceEE
Q 000756 1273 IYEPLPPQYFIRVVSDKWLGVLVCV 1297 (1300)
Q Consensus 1273 ~~~p~~~~~~v~~iSD~wlg~d~~~ 1297 (1300)
. -.+...+.+.+++-.++|.+..-
T Consensus 518 p-vd~T~~~ql~~~ap~~vg~f~~~ 541 (610)
T COG5407 518 P-VDKTGGKQLIVHAPFMVGAFSVK 541 (610)
T ss_pred c-cccccceeeeecCchhhccceee
Confidence 3 23456677888888888887643
No 144
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.30 E-value=5.5e-10 Score=140.89 Aligned_cols=160 Identities=22% Similarity=0.215 Sum_probs=96.0
Q ss_pred CHHHHHHHHHHHc----C---CCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHH
Q 000756 497 NRVQSRVYKSALS----S---ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (1300)
Q Consensus 497 n~iQ~~~i~~~l~----~---~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~ 569 (1300)
..+|-+|++.+.. + +=-++-.|.||||||++=.- |+..+... ..+.+..+..-.|.|--|.-+.
T Consensus 410 F~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNAR-ImyaLsd~--------~~g~RfsiALGLRTLTLQTGda 480 (1110)
T TIGR02562 410 FRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANAR-AMYALRDD--------KQGARFAIALGLRSLTLQTGHA 480 (1110)
T ss_pred cchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHH-HHHHhCCC--------CCCceEEEEccccceeccchHH
Confidence 4699999988764 1 11345669999999986432 33333321 2356888888888888888888
Q ss_pred HhhhcccCCcEEEEEeCCCccc---------------------------h---------------------------hhh
Q 000756 570 LSNRLQMYDVKVRELSGDQTLT---------------------------R---------------------------QQI 595 (1300)
Q Consensus 570 ~~~~l~~~gi~V~~ltGd~~~~---------------------------~---------------------------~~~ 595 (1300)
+++++.--.-.+..+.|+.... . ...
T Consensus 481 ~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rl 560 (1110)
T TIGR02562 481 LKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTL 560 (1110)
T ss_pred HHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhh
Confidence 8887642222334444421100 0 000
Q ss_pred ccceEEEECcchHHHHH--hhcCCCcccc----cccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEEccc
Q 000756 596 EETQIIVTTPEKWDIIT--RKSGDRTYTQ----LVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (1300)
Q Consensus 596 ~~~~IIV~TPekld~l~--r~~~~~~~l~----~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LSAT 669 (1300)
-.+.|+|||+..+.... -+.+. ..+. .-+.|||||+|... +..-.++.+++..... -..++++||||
T Consensus 561 l~apv~V~TIDQlL~a~~~~r~~~-~~l~ll~La~svlVlDEVHaYD----~~~~~~L~rlL~w~~~--lG~~VlLmSAT 633 (1110)
T TIGR02562 561 LAAPVLVCTIDHLIPATESHRGGH-HIAPMLRLMSSDLILDEPDDYE----PEDLPALLRLVQLAGL--LGSRVLLSSAT 633 (1110)
T ss_pred hcCCeEEecHHHHHHHhhhcccch-hHHHHHHhcCCCEEEECCccCC----HHHHHHHHHHHHHHHH--cCCCEEEEeCC
Confidence 12569999999863332 11111 0111 12579999999864 3344455555554433 36789999999
Q ss_pred CCC
Q 000756 670 LPN 672 (1300)
Q Consensus 670 lpn 672 (1300)
||.
T Consensus 634 LP~ 636 (1110)
T TIGR02562 634 LPP 636 (1110)
T ss_pred CCH
Confidence 996
No 145
>COG4889 Predicted helicase [General function prediction only]
Probab=99.28 E-value=3.6e-11 Score=144.13 Aligned_cols=340 Identities=19% Similarity=0.273 Sum_probs=180.4
Q ss_pred CCCCCCHHHHHHHHHHHcC---CCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHH
Q 000756 492 GMTQLNRVQSRVYKSALSS---ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVG 568 (1300)
Q Consensus 492 g~~~ln~iQ~~~i~~~l~~---~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~ 568 (1300)
.-++|+|+|+.|+++++++ ++.-=+.+..|+|||+.++- |...+.. ++++|++|..+|..|..+
T Consensus 158 ~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEala~------------~~iL~LvPSIsLLsQTlr 224 (1518)
T COG4889 158 KPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEALAA------------ARILFLVPSISLLSQTLR 224 (1518)
T ss_pred CCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHHhh------------hheEeecchHHHHHHHHH
Confidence 4568999999999998764 33334445679999998754 4444432 479999999999999999
Q ss_pred HHhhhcccCCcEEEEEeCCCccchhh----------------------------hccceEEEECcchHHHHHhhcCCCcc
Q 000756 569 NLSNRLQMYDVKVRELSGDQTLTRQQ----------------------------IEETQIIVTTPEKWDIITRKSGDRTY 620 (1300)
Q Consensus 569 ~~~~~l~~~gi~V~~ltGd~~~~~~~----------------------------~~~~~IIV~TPekld~l~r~~~~~~~ 620 (1300)
.|..- +.+.++...++.|...++.. ..+--|+++|+..+..+-... ..-
T Consensus 225 ew~~~-~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQ--e~G 301 (1518)
T COG4889 225 EWTAQ-KELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQ--EAG 301 (1518)
T ss_pred HHhhc-cCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHH--HcC
Confidence 99763 34556666666554432210 123458999999765443322 134
Q ss_pred cccccEEEEeccccccc-C-ChhHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceE------Eec
Q 000756 621 TQLVKLLIIDEIHLLHD-N-RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLF------YFD 692 (1300)
Q Consensus 621 l~~v~liIiDEaH~l~d-~-rg~~le~iv~rl~~~~~~~~~~~riV~LSATlpn~~dva~~L~~~~~~~~~------~f~ 692 (1300)
+..++|||.||||+-.. . -|. =.+.+.|+. ..+.-+..+.+-|+||.--+.+-..--.......+. .|.
T Consensus 302 ~~~fDliicDEAHRTtGa~~a~d-d~saFt~vH--s~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fG 378 (1518)
T COG4889 302 LDEFDLIICDEAHRTTGATLAGD-DKSAFTRVH--SDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFG 378 (1518)
T ss_pred CCCccEEEecchhccccceeccc-Ccccceeec--CcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhc
Confidence 66789999999997531 0 000 001111110 000112234466777732111100000000000000 011
Q ss_pred CCcccc------------cceeeEeeeecCchhHHHHH-------------HHH--HHHHHHHHHhC-------------
Q 000756 693 NSYRPV------------PLSQQYIGIQVKKPLQRFQL-------------MND--LCYEKVVAVAG------------- 732 (1300)
Q Consensus 693 ~~~rpv------------~l~~~~~~~~~~~~~~~~~~-------------~~~--~~~~~i~~~~~------------- 732 (1300)
+.+... .....+..+........++. ..+ -|+..+....+
T Consensus 379 eef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~a 458 (1518)
T COG4889 379 EEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTA 458 (1518)
T ss_pred hhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCch
Confidence 111100 00011111111110000100 000 12222222211
Q ss_pred -CCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhh-hhcCCeEEec--CCCCHHH
Q 000756 733 -KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD-LLPYGFAIHH--AGMTRGD 808 (1300)
Q Consensus 733 -~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~-ll~~gv~~~H--agl~~~d 808 (1300)
-.++|-||.+.+....++..+... ...+. .+|++ .....+.+-| |.|+..+
T Consensus 459 p~~RAIaF~k~I~tSK~i~~sFe~V--------------------ve~Y~-----~Elk~d~~nL~iSi~HvDGtmNal~ 513 (1518)
T COG4889 459 PMQRAIAFAKDIKTSKQIAESFETV--------------------VEAYD-----EELKKDFKNLKISIDHVDGTMNALE 513 (1518)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH--------------------HHHHH-----HHHHhcCCCceEEeecccccccHHH
Confidence 113445555555544444433221 11111 11111 2223445544 7899999
Q ss_pred HHHHHHH---HhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCCCCCCceEEEEE
Q 000756 809 RQLVEDL---FGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885 (1300)
Q Consensus 809 R~~ve~~---F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d~~G~~iil 885 (1300)
|...+.+ |....++||---..|+.|||+|+.+-||- |||+. |..|++|-+||.-|...+ .-.+||+
T Consensus 514 R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViF----f~pr~------smVDIVQaVGRVMRKa~g-K~yGYII 582 (1518)
T COG4889 514 RLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIF----FDPRS------SMVDIVQAVGRVMRKAKG-KKYGYII 582 (1518)
T ss_pred HHHHHhccCCCCcchheeeccchhhhcCCCccccceEEE----ecCch------hHHHHHHHHHHHHHhCcC-CccceEE
Confidence 9554443 46678999999999999999999999995 99987 899999999999996422 2345555
Q ss_pred e
Q 000756 886 T 886 (1300)
Q Consensus 886 ~ 886 (1300)
.
T Consensus 583 L 583 (1518)
T COG4889 583 L 583 (1518)
T ss_pred E
Confidence 4
No 146
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.27 E-value=9.2e-10 Score=137.44 Aligned_cols=126 Identities=17% Similarity=0.105 Sum_probs=93.8
Q ss_pred CCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHH-HHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhh
Q 000756 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTIL-QQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (1300)
Q Consensus 495 ~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il-~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~ 573 (1300)
.++++|--..-.+ +. .-|.-+.||.|||+++.+|+. +.+. +..|-+|+++.-||..-++.+...
T Consensus 76 r~ydvQlig~l~L-~~--G~IaEm~TGEGKTL~a~l~ayl~aL~------------G~~VhVvT~NdyLA~RD~e~m~pv 140 (870)
T CHL00122 76 RHFDVQLIGGLVL-ND--GKIAEMKTGEGKTLVATLPAYLNALT------------GKGVHIVTVNDYLAKRDQEWMGQI 140 (870)
T ss_pred CCCchHhhhhHhh-cC--CccccccCCCCchHHHHHHHHHHHhc------------CCceEEEeCCHHHHHHHHHHHHHH
Confidence 3566776554333 32 368999999999999998885 3332 235888999999999999999999
Q ss_pred cccCCcEEEEEeCCCccch-hhhccceEEEECcchH--HHHHhhcC---CCcccccccEEEEeccccc
Q 000756 574 LQMYDVKVRELSGDQTLTR-QQIEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLL 635 (1300)
Q Consensus 574 l~~~gi~V~~ltGd~~~~~-~~~~~~~IIV~TPekl--d~l~r~~~---~~~~l~~v~liIiDEaH~l 635 (1300)
+..+|++|+...++.+... +..-.++|+++|..-+ |.|..+.. .......+.+.|||||+.+
T Consensus 141 y~~LGLsvg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSi 208 (870)
T CHL00122 141 YRFLGLTVGLIQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSI 208 (870)
T ss_pred HHHcCCceeeeCCCCChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhh
Confidence 9999999999988776544 3345789999999864 55544432 1224466889999999965
No 147
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.27 E-value=9.8e-10 Score=136.25 Aligned_cols=127 Identities=11% Similarity=0.080 Sum_probs=92.0
Q ss_pred CCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhc
Q 000756 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1300)
Q Consensus 495 ~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l 574 (1300)
.++++|--.--.+ +.+ -|.-+.||-|||+++.+|+.-.... +..|-+|+..--||..=+..+...+
T Consensus 78 r~ydVQliGglvL-h~G--~IAEMkTGEGKTLvAtLpayLnAL~-----------GkgVhVVTvNdYLA~RDae~mg~vy 143 (925)
T PRK12903 78 RPYDVQIIGGIIL-DLG--SVAEMKTGEGKTITSIAPVYLNALT-----------GKGVIVSTVNEYLAERDAEEMGKVF 143 (925)
T ss_pred CcCchHHHHHHHH-hcC--CeeeecCCCCccHHHHHHHHHHHhc-----------CCceEEEecchhhhhhhHHHHHHHH
Confidence 5566776655443 333 3789999999999999987543322 2246677888899988888888888
Q ss_pred ccCCcEEEEEeCCCccch-hhhccceEEEECcchH--HHHHhhcC---CCcccccccEEEEeccccc
Q 000756 575 QMYDVKVRELSGDQTLTR-QQIEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLL 635 (1300)
Q Consensus 575 ~~~gi~V~~ltGd~~~~~-~~~~~~~IIV~TPekl--d~l~r~~~---~~~~l~~v~liIiDEaH~l 635 (1300)
..+|++|+....+..... +..-.++|.++|..-| |.|.-+.. +......+.+.|||||+.+
T Consensus 144 ~fLGLsvG~i~~~~~~~~rr~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSI 210 (925)
T PRK12903 144 NFLGLSVGINKANMDPNLKREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSI 210 (925)
T ss_pred HHhCCceeeeCCCCChHHHHHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhe
Confidence 889999999987765443 3455799999999884 65554431 2234566789999999965
No 148
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.24 E-value=4.7e-09 Score=135.18 Aligned_cols=73 Identities=21% Similarity=0.274 Sum_probs=59.0
Q ss_pred CCCCCCHHHHHHHHHH---HcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHH
Q 000756 492 GMTQLNRVQSRVYKSA---LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVG 568 (1300)
Q Consensus 492 g~~~ln~iQ~~~i~~~---l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~ 568 (1300)
.|..++|.|.+....+ +..++++++.||||+|||++.+.+++....... ...||+|.+.|.+=..|..+
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~--------~~~kIiy~sRThsQl~q~i~ 78 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP--------EVRKIIYASRTHSQLEQATE 78 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc--------ccccEEEEcccchHHHHHHH
Confidence 3778899999988765 456788999999999999999999998765431 13578888888888888888
Q ss_pred HHhh
Q 000756 569 NLSN 572 (1300)
Q Consensus 569 ~~~~ 572 (1300)
++++
T Consensus 79 Elk~ 82 (705)
T TIGR00604 79 ELRK 82 (705)
T ss_pred HHHh
Confidence 8876
No 149
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.22 E-value=7.8e-10 Score=132.48 Aligned_cols=328 Identities=20% Similarity=0.262 Sum_probs=191.7
Q ss_pred CCCCHHHHHHHHHH---HcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHH
Q 000756 494 TQLNRVQSRVYKSA---LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1300)
Q Consensus 494 ~~ln~iQ~~~i~~~---l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~ 570 (1300)
..++++|.+-+..+ ++.+-|.|+.-.-|-|||+... +.+..+....+-.| --+|++|.-.| ..+.++|
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtI-s~l~yl~~~~~~~G-------PfLVi~P~StL-~NW~~Ef 236 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTI-SLLGYLKGRKGIPG-------PFLVIAPKSTL-DNWMNEF 236 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHH-HHHHHHHHhcCCCC-------CeEEEeeHhhH-HHHHHHH
Confidence 47888998887654 4566689999999999998653 33333333222112 35788998666 4677888
Q ss_pred hhhcccCCcEEEEEeCCCccchhh------hccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccCChhHHH
Q 000756 571 SNRLQMYDVKVRELSGDQTLTRQQ------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLE 644 (1300)
Q Consensus 571 ~~~l~~~gi~V~~ltGd~~~~~~~------~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le 644 (1300)
+++.. +++|..++||....... -...+|+|||+|. ..+... ...--..+++||||+|.+-...
T Consensus 237 ~rf~P--~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi---~i~dk~-~lk~~~W~ylvIDEaHRiKN~~----- 305 (971)
T KOG0385|consen 237 KRFTP--SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEI---AIKDKS-FLKKFNWRYLVIDEAHRIKNEK----- 305 (971)
T ss_pred HHhCC--CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHH---HHhhHH-HHhcCCceEEEechhhhhcchh-----
Confidence 77654 68899999987432221 1367999999995 333211 0011135899999999987532
Q ss_pred HHHHHHHHHHhhccCCeeEEEEccc-CC-------------------ChHHHHHHHhccccCc----eEEecCCcccc--
Q 000756 645 SIVARTVRQIETTKEHIRLVGLSAT-LP-------------------NYEDVALFLRVNLEKG----LFYFDNSYRPV-- 698 (1300)
Q Consensus 645 ~iv~rl~~~~~~~~~~~riV~LSAT-lp-------------------n~~dva~~L~~~~~~~----~~~f~~~~rpv-- 698 (1300)
+.+.++++.. ...-| ++++.| |. ..+++..|+......+ +.....-.+|.
T Consensus 306 s~L~~~lr~f---~~~nr-LLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlL 381 (971)
T KOG0385|consen 306 SKLSKILREF---KTDNR-LLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLL 381 (971)
T ss_pred hHHHHHHHHh---cccce-eEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHH
Confidence 2333444432 22334 666777 21 2366777775421000 00000000000
Q ss_pred ------------ccee--eEeeeec-------------------CchhHHHHHHH------HH-----------------
Q 000756 699 ------------PLSQ--QYIGIQV-------------------KKPLQRFQLMN------DL----------------- 722 (1300)
Q Consensus 699 ------------~l~~--~~~~~~~-------------------~~~~~~~~~~~------~~----------------- 722 (1300)
|... .+++... .....+...+| +.
T Consensus 382 RR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyt 461 (971)
T KOG0385|consen 382 RRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYT 461 (971)
T ss_pred HHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCC
Confidence 0000 1111110 00000111111 00
Q ss_pred -------------HHHHHHHHh--CCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccch
Q 000756 723 -------------CYEKVVAVA--GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSN 787 (1300)
Q Consensus 723 -------------~~~~i~~~~--~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~ 787 (1300)
+.++++... .+++||||.. .-++-..|.+.+.
T Consensus 462 tdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQ----mt~mLDILeDyc~----------------------------- 508 (971)
T KOG0385|consen 462 TDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQ----MTRMLDILEDYCM----------------------------- 508 (971)
T ss_pred cchHHHhcCcceehHHHHHHHHHhCCCeEEEeHH----HHHHHHHHHHHHH-----------------------------
Confidence 122222222 2678888863 2233333433331
Q ss_pred hhhhhhcCCeEEecCCCCHHHHHHHHHHHhCC---CccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHH
Q 000756 788 DLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDG---HVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDI 864 (1300)
Q Consensus 788 ~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g---~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~ 864 (1300)
+-.|...-+.|.++.++|...++.|... +.-.|++|.+.+-||||-+.++||-+++-|+|. .=
T Consensus 509 ----~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ----------~D 574 (971)
T KOG0385|consen 509 ----LRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQ----------VD 574 (971)
T ss_pred ----hcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCch----------hh
Confidence 1124455678999999999999999653 455799999999999999999999855555554 45
Q ss_pred HHhhhccCCCCCCCceEEEEEeCCCcHH
Q 000756 865 MQMLGRAGRPQYDSYGEGIIITGHSELR 892 (1300)
Q Consensus 865 lQr~GRAGR~g~d~~G~~iil~~~~~~~ 892 (1300)
+|.+-||-|-|..++-.+|.+++....+
T Consensus 575 LQAmDRaHRIGQ~K~V~V~RLitentVE 602 (971)
T KOG0385|consen 575 LQAMDRAHRIGQKKPVVVYRLITENTVE 602 (971)
T ss_pred hHHHHHHHhhCCcCceEEEEEeccchHH
Confidence 7778888888877888999999887643
No 150
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.21 E-value=4.8e-09 Score=130.80 Aligned_cols=127 Identities=16% Similarity=0.092 Sum_probs=94.7
Q ss_pred CCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhc
Q 000756 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1300)
Q Consensus 495 ~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l 574 (1300)
.+.++|--.--.+ +.+ -|..+.||-|||+++.+|+.-.... +..|-+|++..-||..=++.+...+
T Consensus 85 r~ydVQliGgl~L-h~G--~IAEM~TGEGKTL~atlpaylnAL~-----------GkgVhVVTvNdYLA~RDae~m~~vy 150 (939)
T PRK12902 85 RHFDVQLIGGMVL-HEG--QIAEMKTGEGKTLVATLPSYLNALT-----------GKGVHVVTVNDYLARRDAEWMGQVH 150 (939)
T ss_pred CcchhHHHhhhhh-cCC--ceeeecCCCChhHHHHHHHHHHhhc-----------CCCeEEEeCCHHHHHhHHHHHHHHH
Confidence 4566676554433 332 5889999999999999887654333 3358889999999999999999989
Q ss_pred ccCCcEEEEEeCCCccch-hhhccceEEEECcchH--HHHHhhcC---CCcccccccEEEEeccccc
Q 000756 575 QMYDVKVRELSGDQTLTR-QQIEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLL 635 (1300)
Q Consensus 575 ~~~gi~V~~ltGd~~~~~-~~~~~~~IIV~TPekl--d~l~r~~~---~~~~l~~v~liIiDEaH~l 635 (1300)
..+|++|+...++..... +..-.++|+++|+..+ |.|..+.. .......+.+.|||||+.+
T Consensus 151 ~~LGLtvg~i~~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSI 217 (939)
T PRK12902 151 RFLGLSVGLIQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSI 217 (939)
T ss_pred HHhCCeEEEECCCCChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccce
Confidence 999999999988765543 3456899999999985 55544332 1234567889999999966
No 151
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.19 E-value=6.8e-09 Score=119.03 Aligned_cols=152 Identities=18% Similarity=0.186 Sum_probs=97.2
Q ss_pred CCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhh
Q 000756 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (1300)
Q Consensus 494 ~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~ 573 (1300)
..|-|+|.+-+.-+++.+..+++.-.-|-|||..|+ +|....... + -+|+|||- +|-..+.+.+.++
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAl-aIA~yyraE----w-------plliVcPA-svrftWa~al~r~ 263 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQAL-AIARYYRAE----W-------PLLIVCPA-SVRFTWAKALNRF 263 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHH-HHHHHHhhc----C-------cEEEEecH-HHhHHHHHHHHHh
Confidence 456789999999999988899999999999999885 444444331 2 38889996 4445666667666
Q ss_pred cccCCcEEEEEeCCCccchhhhccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccCChhHHHHHHHHHHHH
Q 000756 574 LQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQ 653 (1300)
Q Consensus 574 l~~~gi~V~~ltGd~~~~~~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~ 653 (1300)
|.... .+..+.+....-...-....|.|.+++.+..+..... -...++||+||.|.|.+.+-.....++-
T Consensus 264 lps~~-pi~vv~~~~D~~~~~~t~~~v~ivSye~ls~l~~~l~----~~~~~vvI~DEsH~Lk~sktkr~Ka~~d----- 333 (689)
T KOG1000|consen 264 LPSIH-PIFVVDKSSDPLPDVCTSNTVAIVSYEQLSLLHDILK----KEKYRVVIFDESHMLKDSKTKRTKAATD----- 333 (689)
T ss_pred ccccc-ceEEEecccCCccccccCCeEEEEEHHHHHHHHHHHh----cccceEEEEechhhhhccchhhhhhhhh-----
Confidence 65331 2333444333221112235688888887644433222 2236899999999998754322222222
Q ss_pred HhhccCCeeEEEEcccC
Q 000756 654 IETTKEHIRLVGLSATL 670 (1300)
Q Consensus 654 ~~~~~~~~riV~LSATl 670 (1300)
-...-.++|+||.|.
T Consensus 334 --llk~akhvILLSGTP 348 (689)
T KOG1000|consen 334 --LLKVAKHVILLSGTP 348 (689)
T ss_pred --HHHHhhheEEecCCc
Confidence 123456789999994
No 152
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.15 E-value=1.1e-08 Score=127.09 Aligned_cols=365 Identities=18% Similarity=0.138 Sum_probs=206.5
Q ss_pred CCCCHHHHHHHHHHHcC---------CCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHH
Q 000756 494 TQLNRVQSRVYKSALSS---------ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564 (1300)
Q Consensus 494 ~~ln~iQ~~~i~~~l~~---------~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~ 564 (1300)
..++|+|.+.|.-++.. ..-++++=..|+|||+...-.|.-.+.+++..... -.+.|||+|. .|+.
T Consensus 237 ~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~----~~k~lVV~P~-sLv~ 311 (776)
T KOG0390|consen 237 KILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPL----INKPLVVAPS-SLVN 311 (776)
T ss_pred hhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCcccc----ccccEEEccH-HHHH
Confidence 47899999999876532 11256666779999998877777777776542221 2478999996 8899
Q ss_pred HHHHHHhhhcccCCcEEEEEeCCCccch----------hhhccceEEEECcchHHHHHhhcCCCcccccccEEEEecccc
Q 000756 565 EVVGNLSNRLQMYDVKVRELSGDQTLTR----------QQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL 634 (1300)
Q Consensus 565 q~~~~~~~~l~~~gi~V~~ltGd~~~~~----------~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~ 634 (1300)
-+.++|.+++....+.+..+.|...... ...-...|++.+.|.+....+. .....++++|+||.|.
T Consensus 312 nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~----il~~~~glLVcDEGHr 387 (776)
T KOG0390|consen 312 NWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK----ILLIRPGLLVCDEGHR 387 (776)
T ss_pred HHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH----HhcCCCCeEEECCCCC
Confidence 9999999988765677777777655300 0112456778888865322222 2445689999999999
Q ss_pred cccCChhHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhc----cccCceEEecCCcccc----cceeeE--
Q 000756 635 LHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRV----NLEKGLFYFDNSYRPV----PLSQQY-- 704 (1300)
Q Consensus 635 l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LSATlpn~~dva~~L~~----~~~~~~~~f~~~~rpv----~l~~~~-- 704 (1300)
+-....-.+.. +... .-.|-|+||.|+= -.++.+|+.. +| +...-..+++.. .+...-
T Consensus 388 lkN~~s~~~ka--------L~~l-~t~rRVLLSGTp~-QNdl~EyFnlL~fvrP--~~Lgs~~sf~k~~~~~i~~~~~~~ 455 (776)
T KOG0390|consen 388 LKNSDSLTLKA--------LSSL-KTPRRVLLTGTPI-QNDLKEYFNLLDFVRP--GFLGSISSFKKKFEIPILRGRDAD 455 (776)
T ss_pred ccchhhHHHHH--------HHhc-CCCceEEeeCCcc-cccHHHHHHHHhhcCh--hhccchHHHHHHhhcccccccCCC
Confidence 87644333222 2222 3445688999942 2355555542 11 010000111100 000000
Q ss_pred eeeecCchhHHHHHHHHHHHH--------HHHHHhC-CCeEEEEEcChHHHHHHHHHHHHHh---------hc-------
Q 000756 705 IGIQVKKPLQRFQLMNDLCYE--------KVVAVAG-KHQVLIFVHSRKETAKTARAIRDTA---------LE------- 759 (1300)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~--------~i~~~~~-~~~vLVFv~sr~~~~~~a~~L~~~~---------~~------- 759 (1300)
..-.......+++.|..++-. .+....+ ..-.+|||+.-..-..+...|.... ..
T Consensus 456 ~s~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k 535 (776)
T KOG0390|consen 456 ASEEDREREERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKK 535 (776)
T ss_pred cchhhhhhHHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHH
Confidence 000000112233333333222 1223344 3457889987655555554444320 00
Q ss_pred -cccccc------------ccc-----------cC--ch--hH--HHHHhhh----hcc-------cc--------hhhh
Q 000756 760 -NDTLGR------------FLK-----------ED--SV--SR--EILQSHT----DMV-------KS--------NDLK 790 (1300)
Q Consensus 760 -~~~l~~------------~l~-----------~~--~~--~~--~~l~~~~----~~~-------~~--------~~L~ 790 (1300)
+..... +.. .+ .. +. -.|...+ +.. .+ ..+.
T Consensus 536 ~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~ 615 (776)
T KOG0390|consen 536 LCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLC 615 (776)
T ss_pred HhcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHH
Confidence 000000 000 00 00 00 0000000 000 00 2333
Q ss_pred hhhcCCeEEecCCCCHHHHHHHHHHHhCCCc--c-EEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHh
Q 000756 791 DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHV--Q-VLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQM 867 (1300)
Q Consensus 791 ~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i--~-VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr 867 (1300)
....+.+..+||.|+..+|..+.+.|.+..- . .|.+|-+.+.||||=+..-||..+..|| ++.=.|.
T Consensus 616 ~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWN----------Pa~d~QA 685 (776)
T KOG0390|consen 616 RWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWN----------PAVDQQA 685 (776)
T ss_pred hhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCC----------chhHHHH
Confidence 4446788899999999999999999976432 3 5667788899999988888887444444 4457899
Q ss_pred hhccCCCCCCCceEEEEEeCCC
Q 000756 868 LGRAGRPQYDSYGEGIIITGHS 889 (1300)
Q Consensus 868 ~GRAGR~g~d~~G~~iil~~~~ 889 (1300)
++||=|+|.-+.-..|.+.+..
T Consensus 686 maR~~RdGQKk~v~iYrLlatG 707 (776)
T KOG0390|consen 686 MARAWRDGQKKPVYIYRLLATG 707 (776)
T ss_pred HHHhccCCCcceEEEEEeecCC
Confidence 9999999977777777766554
No 153
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.07 E-value=2.8e-10 Score=104.22 Aligned_cols=72 Identities=32% Similarity=0.583 Sum_probs=65.0
Q ss_pred cCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCC
Q 000756 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (1300)
Q Consensus 794 ~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR 873 (1300)
.+++..+||+|+..+|..+++.|.+|...|||+|+++++|+|+|.+..||. ++++ .+..+|.||+||++|
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~----~~~~------~~~~~~~Q~~gR~~R 80 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVII----YDLP------WSPASYIQRIGRAGR 80 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEE----eCCC------CCHHHHHHhhccccc
Confidence 467899999999999999999999999999999999999999998888886 5554 388999999999999
Q ss_pred CC
Q 000756 874 PQ 875 (1300)
Q Consensus 874 ~g 875 (1300)
.|
T Consensus 81 ~g 82 (82)
T smart00490 81 AG 82 (82)
T ss_pred CC
Confidence 64
No 154
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.01 E-value=4.5e-08 Score=121.23 Aligned_cols=303 Identities=14% Similarity=0.150 Sum_probs=161.1
Q ss_pred CCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcccCCcEEEEEeCCCcc
Q 000756 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590 (1300)
Q Consensus 511 ~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~~gi~V~~ltGd~~~ 590 (1300)
+...+|-||.|||||.+..-.+-..+.. .+.++++|+-+++|+.++..+|+...- .|.....-.++...
T Consensus 49 ~~V~vVRSpMGTGKTtaLi~wLk~~l~~----------~~~~VLvVShRrSL~~sL~~rf~~~~l-~gFv~Y~d~~~~~i 117 (824)
T PF02399_consen 49 RGVLVVRSPMGTGKTTALIRWLKDALKN----------PDKSVLVVSHRRSLTKSLAERFKKAGL-SGFVNYLDSDDYII 117 (824)
T ss_pred CCeEEEECCCCCCcHHHHHHHHHHhccC----------CCCeEEEEEhHHHHHHHHHHHHhhcCC-Ccceeeeccccccc
Confidence 4567899999999998765444333221 256899999999999999999875321 12221111122222
Q ss_pred chhhhccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccC-ChhH---HHHHHHHHHHHHhhccCCeeEEEE
Q 000756 591 TRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDN-RGPV---LESIVARTVRQIETTKEHIRLVGL 666 (1300)
Q Consensus 591 ~~~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~-rg~~---le~iv~rl~~~~~~~~~~~riV~L 666 (1300)
.. ...+-++++.+ .|-|-.. ..+.++++|||||+-.+... +.+. .+.+.+.+... .....++|++
T Consensus 118 ~~---~~~~rLivqId---SL~R~~~--~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~l---I~~ak~VI~~ 186 (824)
T PF02399_consen 118 DG---RPYDRLIVQID---SLHRLDG--SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKEL---IRNAKTVIVM 186 (824)
T ss_pred cc---cccCeEEEEeh---hhhhccc--ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHH---HHhCCeEEEe
Confidence 11 12344555555 4555443 45677999999999654321 1111 11222212111 2346689999
Q ss_pred cccCCChHHHHHHHh-ccccCceEEecCCcccccceeeEe---------------eeecCc--------------hhHHH
Q 000756 667 SATLPNYEDVALFLR-VNLEKGLFYFDNSYRPVPLSQQYI---------------GIQVKK--------------PLQRF 716 (1300)
Q Consensus 667 SATlpn~~dva~~L~-~~~~~~~~~f~~~~rpv~l~~~~~---------------~~~~~~--------------~~~~~ 716 (1300)
-||+.+ ..-+|+. ..+...+..+...|........-. ...... .....
T Consensus 187 DA~ln~--~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (824)
T PF02399_consen 187 DADLND--QTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAI 264 (824)
T ss_pred cCCCCH--HHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCcccccccc
Confidence 999964 2333332 223344444443332211111000 000000 00000
Q ss_pred HHHHHHHHHHHHHHh-CCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcC
Q 000756 717 QLMNDLCYEKVVAVA-GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPY 795 (1300)
Q Consensus 717 ~~~~~~~~~~i~~~~-~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~ 795 (1300)
..-....+..+.... .++.+-||++|...+..+++...... .
T Consensus 265 ~~~~~tF~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~-------------------------------------~ 307 (824)
T PF02399_consen 265 SNDETTFFSELLARLNAGKNICVFSSTVSFAEIVARFCARFT-------------------------------------K 307 (824)
T ss_pred ccchhhHHHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcC-------------------------------------C
Confidence 000011233333333 37788899988888777776655431 3
Q ss_pred CeEEecCCCCHHHHHHHHHHHhCCCccEEEeccccccccCCCCc--EEEEecceeccCCCCCcccCCHHHHHHhhhccCC
Q 000756 796 GFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAH--TVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (1300)
Q Consensus 796 gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav--~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR 873 (1300)
.|..+++.-... .++. =+..+|++=|++...|+++-.. .-+.-+ ..+..+ --+..++.||+||+-.
T Consensus 308 ~Vl~l~s~~~~~---dv~~---W~~~~VviYT~~itvG~Sf~~~HF~~~f~y---vk~~~~---gpd~~s~~Q~lgRvR~ 375 (824)
T PF02399_consen 308 KVLVLNSTDKLE---DVES---WKKYDVVIYTPVITVGLSFEEKHFDSMFAY---VKPMSY---GPDMVSVYQMLGRVRS 375 (824)
T ss_pred eEEEEcCCCCcc---cccc---ccceeEEEEeceEEEEeccchhhceEEEEE---ecCCCC---CCcHHHHHHHHHHHHh
Confidence 355666654444 2322 3578999999999999998542 112211 111111 1156679999999988
Q ss_pred CCCCCceEEEEEeCCC
Q 000756 874 PQYDSYGEGIIITGHS 889 (1300)
Q Consensus 874 ~g~d~~G~~iil~~~~ 889 (1300)
.. ..+.++.+...
T Consensus 376 l~---~~ei~v~~d~~ 388 (824)
T PF02399_consen 376 LL---DNEIYVYIDAS 388 (824)
T ss_pred hc---cCeEEEEEecc
Confidence 74 55666666543
No 155
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.87 E-value=8.1e-08 Score=120.92 Aligned_cols=323 Identities=20% Similarity=0.261 Sum_probs=186.7
Q ss_pred CCCCHHHHHHHHHHHc---CCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHH
Q 000756 494 TQLNRVQSRVYKSALS---SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1300)
Q Consensus 494 ~~ln~iQ~~~i~~~l~---~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~ 570 (1300)
..|+.+|..-++.++. .++|+|+.-.-|-|||..-.-.+ ..+.....-.| -.|+|+|.-. +..+.+.|
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl-~~l~~~~~~~g-------pflvvvplst-~~~W~~ef 439 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFL-SYLFHSLQIHG-------PFLVVVPLST-ITAWEREF 439 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHH-HHHHHhhhccC-------CeEEEeehhh-hHHHHHHH
Confidence 7899999998876543 36789999999999997543222 22222111112 2577888855 45666677
Q ss_pred hhhcccCCcEEEEEeCCCccchhh------------hccceEEEECcchHHHHHhhcCCCccccc--ccEEEEecccccc
Q 000756 571 SNRLQMYDVKVRELSGDQTLTRQQ------------IEETQIIVTTPEKWDIITRKSGDRTYTQL--VKLLIIDEIHLLH 636 (1300)
Q Consensus 571 ~~~l~~~gi~V~~ltGd~~~~~~~------------~~~~~IIV~TPekld~l~r~~~~~~~l~~--v~liIiDEaH~l~ 636 (1300)
..+. .+++..++|+.....-. .-..++++||.|. ++.-. ..++. ..+++|||||.|-
T Consensus 440 ~~w~---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~---~LkDk---~~L~~i~w~~~~vDeahrLk 510 (1373)
T KOG0384|consen 440 ETWT---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEI---VLKDK---AELSKIPWRYLLVDEAHRLK 510 (1373)
T ss_pred HHHh---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHH---HhccH---hhhccCCcceeeecHHhhcC
Confidence 6554 57888888875422110 1146899999995 33221 23333 4689999999997
Q ss_pred cCChhHHHHHHHHHHHHHhhccCCeeEEEEccc-CCC-hHHHHHHHhccccCceEE--------ec-----------CCc
Q 000756 637 DNRGPVLESIVARTVRQIETTKEHIRLVGLSAT-LPN-YEDVALFLRVNLEKGLFY--------FD-----------NSY 695 (1300)
Q Consensus 637 d~rg~~le~iv~rl~~~~~~~~~~~riV~LSAT-lpn-~~dva~~L~~~~~~~~~~--------f~-----------~~~ 695 (1300)
..-...++.+. .....-| |+++.| |.| .+++...++.-.. +-|. |+ ...
T Consensus 511 N~~~~l~~~l~--------~f~~~~r-llitgTPlQNsikEL~sLl~Fl~P-~kf~~~~~f~~~~~~~~e~~~~~L~~~L 580 (1373)
T KOG0384|consen 511 NDESKLYESLN--------QFKMNHR-LLITGTPLQNSLKELWSLLHFLMP-GKFDSWDEFLEEFDEETEEQVRKLQQIL 580 (1373)
T ss_pred chHHHHHHHHH--------Hhcccce-eeecCCCccccHHHHHHHhcccCC-CCCCcHHHHHHhhcchhHHHHHHHHHHh
Confidence 54444444321 1222344 556666 333 5566655532110 0000 00 000
Q ss_pred ccc--------------cceeeEeeeecCch------------------------hHHHHHHHH----------------
Q 000756 696 RPV--------------PLSQQYIGIQVKKP------------------------LQRFQLMND---------------- 721 (1300)
Q Consensus 696 rpv--------------~l~~~~~~~~~~~~------------------------~~~~~~~~~---------------- 721 (1300)
+|. |-...++.+..... ...++.|.+
T Consensus 581 ~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee 660 (1373)
T KOG0384|consen 581 KPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEE 660 (1373)
T ss_pred hHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHH
Confidence 110 11112221111000 000011100
Q ss_pred ------------H-------------HHHHHHHHh--CCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhH
Q 000756 722 ------------L-------------CYEKVVAVA--GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSR 774 (1300)
Q Consensus 722 ------------~-------------~~~~i~~~~--~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~ 774 (1300)
. +.++++..+ ++++||||-.-.+.-.-++.+|..+.
T Consensus 661 ~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~----------------- 723 (1373)
T KOG0384|consen 661 KILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRG----------------- 723 (1373)
T ss_pred HHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcC-----------------
Confidence 0 112222222 25778888766555555555555443
Q ss_pred HHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHHHHHHHhC---CCccEEEeccccccccCCCCcEEEEecceeccC
Q 000756 775 EILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGD---GHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNP 851 (1300)
Q Consensus 775 ~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~---g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~ 851 (1300)
|.+--+-|++..+-|+..++.|.. ...-.|+||.+.+-||||-+.+.||- ||.
T Consensus 724 --------------------ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVII----FDS 779 (1373)
T KOG0384|consen 724 --------------------YPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVII----FDS 779 (1373)
T ss_pred --------------------CcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEE----eCC
Confidence 334445899999999999999964 35668999999999999987666664 553
Q ss_pred CCCCcccCCHHHHHHhhhccCCCCCCCceEEEEEeCCCcH
Q 000756 852 EKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL 891 (1300)
Q Consensus 852 ~~g~~~~~S~~d~lQr~GRAGR~g~d~~G~~iil~~~~~~ 891 (1300)
.= .++.=+|...||-|-|.-+.-.+|.|.+....
T Consensus 780 DW------NPQNDLQAqARaHRIGQkk~VnVYRLVTk~Tv 813 (1373)
T KOG0384|consen 780 DW------NPQNDLQAQARAHRIGQKKHVNVYRLVTKNTV 813 (1373)
T ss_pred CC------CcchHHHHHHHHHhhcccceEEEEEEecCCch
Confidence 31 45567899999999998888899999887653
No 156
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.86 E-value=3.3e-07 Score=111.21 Aligned_cols=129 Identities=20% Similarity=0.222 Sum_probs=87.2
Q ss_pred CCCCCHHHHHHHHHHHc---CCCeEEEEccCCCccHHH--HHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHH
Q 000756 493 MTQLNRVQSRVYKSALS---SADNILLCAPTGAGKTNV--AVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567 (1300)
Q Consensus 493 ~~~ln~iQ~~~i~~~l~---~~~nvLi~APTGsGKT~v--a~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~ 567 (1300)
+..|.++|...+..+++ .+.--|+.-.-|-|||.. +.|+.+++-... ...+|+|||. .++.|+.
T Consensus 203 ~~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~----------~~paLIVCP~-Tii~qW~ 271 (923)
T KOG0387|consen 203 WSKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKL----------TKPALIVCPA-TIIHQWM 271 (923)
T ss_pred HHHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccc----------cCceEEEccH-HHHHHHH
Confidence 35788999999987653 333468888999999974 344444432111 1369999997 6788999
Q ss_pred HHHhhhcccCCcEEEEEeCCCcc----------------chhhhccceEEEECcchHHHHHhhcCCCcccccccEEEEec
Q 000756 568 GNLSNRLQMYDVKVRELSGDQTL----------------TRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDE 631 (1300)
Q Consensus 568 ~~~~~~l~~~gi~V~~ltGd~~~----------------~~~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDE 631 (1300)
.+|..++.+ .+|..++|..+- .........|+++|++.+ |..++...-....++|+||
T Consensus 272 ~E~~~w~p~--~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~----r~~~d~l~~~~W~y~ILDE 345 (923)
T KOG0387|consen 272 KEFQTWWPP--FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGF----RIQGDDLLGILWDYVILDE 345 (923)
T ss_pred HHHHHhCcc--eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhh----cccCcccccccccEEEecC
Confidence 999988764 577777775441 112234567999999864 2333322334468999999
Q ss_pred ccccccC
Q 000756 632 IHLLHDN 638 (1300)
Q Consensus 632 aH~l~d~ 638 (1300)
.|.+...
T Consensus 346 GH~IrNp 352 (923)
T KOG0387|consen 346 GHRIRNP 352 (923)
T ss_pred cccccCC
Confidence 9998653
No 157
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.84 E-value=1.8e-08 Score=100.58 Aligned_cols=134 Identities=20% Similarity=0.316 Sum_probs=75.2
Q ss_pred CCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcccCCcEEEEEeCCCcc
Q 000756 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590 (1300)
Q Consensus 511 ~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~~gi~V~~ltGd~~~ 590 (1300)
++--+|-..+|+|||.-.+--++++.... +.++|+++|||.++.++.+.++.. ++++. +.-..
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~~----------~~rvLvL~PTRvva~em~~aL~~~----~~~~~--t~~~~- 66 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIKR----------RLRVLVLAPTRVVAEEMYEALKGL----PVRFH--TNARM- 66 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHHT----------T--EEEEESSHHHHHHHHHHTTTS----SEEEE--STTSS-
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHHc----------cCeEEEecccHHHHHHHHHHHhcC----CcccC--ceeee-
Confidence 34567889999999996555555543332 458999999999999998887542 33332 21111
Q ss_pred chhhhccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccCChhHHHHHHHH-HHHHHhhccCCeeEEEEccc
Q 000756 591 TRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVAR-TVRQIETTKEHIRLVGLSAT 669 (1300)
Q Consensus 591 ~~~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r-l~~~~~~~~~~~riV~LSAT 669 (1300)
.....+.-|-|+|...+-...-.. ....++++||+||+|.... .+|..+ .++.... ....++|.||||
T Consensus 67 -~~~~g~~~i~vMc~at~~~~~~~p---~~~~~yd~II~DEcH~~Dp------~sIA~rg~l~~~~~-~g~~~~i~mTAT 135 (148)
T PF07652_consen 67 -RTHFGSSIIDVMCHATYGHFLLNP---CRLKNYDVIIMDECHFTDP------TSIAARGYLRELAE-SGEAKVIFMTAT 135 (148)
T ss_dssp -----SSSSEEEEEHHHHHHHHHTS---SCTTS-SEEEECTTT--SH------HHHHHHHHHHHHHH-TTS-EEEEEESS
T ss_pred -ccccCCCcccccccHHHHHHhcCc---ccccCccEEEEeccccCCH------HHHhhheeHHHhhh-ccCeeEEEEeCC
Confidence 122345567788887653322222 2457899999999998531 112111 1122222 345789999999
Q ss_pred CCC
Q 000756 670 LPN 672 (1300)
Q Consensus 670 lpn 672 (1300)
.|.
T Consensus 136 PPG 138 (148)
T PF07652_consen 136 PPG 138 (148)
T ss_dssp -TT
T ss_pred CCC
Confidence 774
No 158
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.80 E-value=2.8e-07 Score=116.45 Aligned_cols=126 Identities=17% Similarity=0.137 Sum_probs=86.1
Q ss_pred CCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcc
Q 000756 496 LNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ 575 (1300)
Q Consensus 496 ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~ 575 (1300)
+.++|.-.-- +++.+ -|.-+.||-|||+++.+|+.-....+ .-|-+|+..--||.-=+..+...+.
T Consensus 170 ~yDVQliGgi-vLh~G--~IAEM~TGEGKTLvAtlp~yLnAL~G-----------kgVHvVTVNDYLA~RDaewmgply~ 235 (1112)
T PRK12901 170 HYDVQLIGGV-VLHQG--KIAEMATGEGKTLVATLPVYLNALTG-----------NGVHVVTVNDYLAKRDSEWMGPLYE 235 (1112)
T ss_pred ccchHHhhhh-hhcCC--ceeeecCCCCchhHHHHHHHHHHHcC-----------CCcEEEEechhhhhccHHHHHHHHH
Confidence 3445544333 23433 48899999999999998876544432 1255667777888877777788888
Q ss_pred cCCcEEEEEeC-CC-ccchhhhccceEEEECcchH--HHHHhhcC---CCcccccccEEEEeccccc
Q 000756 576 MYDVKVRELSG-DQ-TLTRQQIEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLL 635 (1300)
Q Consensus 576 ~~gi~V~~ltG-d~-~~~~~~~~~~~IIV~TPekl--d~l~r~~~---~~~~l~~v~liIiDEaH~l 635 (1300)
.+|++|++... +. ...++..-.++|.++|..-| |.|..+.. +......+.+.|||||+.+
T Consensus 236 fLGLsvg~i~~~~~~~~~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSI 302 (1112)
T PRK12901 236 FHGLSVDCIDKHQPNSEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSV 302 (1112)
T ss_pred HhCCceeecCCCCCCHHHHHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhh
Confidence 88999998865 32 23344456899999998874 55544331 2234566889999999965
No 159
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.73 E-value=2.2e-07 Score=116.56 Aligned_cols=157 Identities=20% Similarity=0.261 Sum_probs=97.7
Q ss_pred CCCHHHHHHHHHH--HcC-CCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHh
Q 000756 495 QLNRVQSRVYKSA--LSS-ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (1300)
Q Consensus 495 ~ln~iQ~~~i~~~--l~~-~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~ 571 (1300)
.|+.+|.+-+..+ ++. .=+-|+|-.-|-|||+..+-.+.......+. +......+-.++|||. .|+-.+..+|.
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s--~~~e~~~~PSLIVCPs-TLtGHW~~E~~ 1051 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRS--ESSEFNRLPSLIVCPS-TLTGHWKSEVK 1051 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcc--cchhhccCCeEEECCc-hhhhHHHHHHH
Confidence 5788999887654 222 2257999999999999876544443333211 1112233447899997 78999999999
Q ss_pred hhcccCCcEEEEEeCCCccc---hhhhccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccCChhHHHHHHH
Q 000756 572 NRLQMYDVKVRELSGDQTLT---RQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVA 648 (1300)
Q Consensus 572 ~~l~~~gi~V~~ltGd~~~~---~~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~ 648 (1300)
+++.. ++|...+|..... +.+..+++|||+.++.+ |+-.+...-....++|+||-|-+...+ +
T Consensus 1052 kf~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~----RnD~d~l~~~~wNYcVLDEGHVikN~k--------t 1117 (1549)
T KOG0392|consen 1052 KFFPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVV----RNDVDYLIKIDWNYCVLDEGHVIKNSK--------T 1117 (1549)
T ss_pred Hhcch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHH----HHHHHHHHhcccceEEecCcceecchH--------H
Confidence 87764 6777778754332 23456789999999854 211110011135799999999986543 1
Q ss_pred HHHHHHhhccCCeeEEEEccc
Q 000756 649 RTVRQIETTKEHIRLVGLSAT 669 (1300)
Q Consensus 649 rl~~~~~~~~~~~riV~LSAT 669 (1300)
++-+.+.+...+.| +.||.|
T Consensus 1118 kl~kavkqL~a~hR-LILSGT 1137 (1549)
T KOG0392|consen 1118 KLTKAVKQLRANHR-LILSGT 1137 (1549)
T ss_pred HHHHHHHHHhhcce-EEeeCC
Confidence 22222333344455 566777
No 160
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.69 E-value=7.3e-08 Score=111.38 Aligned_cols=167 Identities=22% Similarity=0.237 Sum_probs=96.1
Q ss_pred HHHHHHHHHHc------------CCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHH
Q 000756 499 VQSRVYKSALS------------SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (1300)
Q Consensus 499 iQ~~~i~~~l~------------~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~ 566 (1300)
+|.+++..++. ....+|++-.+|+|||..++..+. .+...... ....++|||+|. ++..++
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~~-----~~~~~~LIv~P~-~l~~~W 73 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALIS-YLKNEFPQ-----RGEKKTLIVVPS-SLLSQW 73 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHH-HHHHCCTT-----SS-S-EEEEE-T-TTHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhh-hhhhcccc-----ccccceeEeecc-chhhhh
Confidence 46777665532 335799999999999998866655 33332111 012259999999 888999
Q ss_pred HHHHhhhcccCCcEEEEEeCCC---ccchhhhccceEEEECcchHHHHHhhc-CCCcccccccEEEEecccccccCChhH
Q 000756 567 VGNLSNRLQMYDVKVRELSGDQ---TLTRQQIEETQIIVTTPEKWDIITRKS-GDRTYTQLVKLLIIDEIHLLHDNRGPV 642 (1300)
Q Consensus 567 ~~~~~~~l~~~gi~V~~ltGd~---~~~~~~~~~~~IIV~TPekld~l~r~~-~~~~~l~~v~liIiDEaH~l~d~rg~~ 642 (1300)
..++.+.+.+...++..+.|.. ..........+++|+|++.+....... ......-..++||+||+|.+.+.....
T Consensus 74 ~~E~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~ 153 (299)
T PF00176_consen 74 KEEIEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDSKR 153 (299)
T ss_dssp HHHHHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTSHH
T ss_pred hhhhccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEecccccccccccc
Confidence 9999998865567888888876 112223457889999999654110111 110111247899999999996543333
Q ss_pred HHHHHHHHHHHHhhccCCeeEEEEcccCC-C-hHHHHHHHh
Q 000756 643 LESIVARTVRQIETTKEHIRLVGLSATLP-N-YEDVALFLR 681 (1300)
Q Consensus 643 le~iv~rl~~~~~~~~~~~riV~LSATlp-n-~~dva~~L~ 681 (1300)
...+ .... ..+.++||||.- | +.++...+.
T Consensus 154 ~~~l--------~~l~-~~~~~lLSgTP~~n~~~dl~~~l~ 185 (299)
T PF00176_consen 154 YKAL--------RKLR-ARYRWLLSGTPIQNSLEDLYSLLR 185 (299)
T ss_dssp HHHH--------HCCC-ECEEEEE-SS-SSSGSHHHHHHHH
T ss_pred cccc--------cccc-cceEEeeccccccccccccccchh
Confidence 3322 1222 566788999933 2 455554443
No 161
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=98.64 E-value=1.5e-06 Score=105.45 Aligned_cols=377 Identities=21% Similarity=0.246 Sum_probs=202.4
Q ss_pred CCCHHHHHHHHHH---HcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHh
Q 000756 495 QLNRVQSRVYKSA---LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (1300)
Q Consensus 495 ~ln~iQ~~~i~~~---l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~ 571 (1300)
+|-++|.--+..+ ++..=|.|+.-.-|-|||..+. +-+..+.+... .+ .-|||||.-.| ..+.++|.
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvI-aFlayLkq~g~-------~g-pHLVVvPsSTl-eNWlrEf~ 468 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVI-AFLAYLKQIGN-------PG-PHLVVVPSSTL-ENWLREFA 468 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhHHH-HHHHHHHHcCC-------CC-CcEEEecchhH-HHHHHHHH
Confidence 3677887766553 4555577999999999997543 22333333211 12 35778898654 57788888
Q ss_pred hhcccCCcEEEEEeCCCccchhh-------hccceEEEECcchHHHHHhhcCCCccc--ccccEEEEecccccccCChhH
Q 000756 572 NRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYT--QLVKLLIIDEIHLLHDNRGPV 642 (1300)
Q Consensus 572 ~~l~~~gi~V~~ltGd~~~~~~~-------~~~~~IIV~TPekld~l~r~~~~~~~l--~~v~liIiDEaH~l~d~rg~~ 642 (1300)
+++. .++|..++|......+. ....+|+|||+.-. .....++.++ .+++++|+||.|.|-+.....
T Consensus 469 kwCP--sl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la---~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeR 543 (941)
T KOG0389|consen 469 KWCP--SLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLA---ASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSER 543 (941)
T ss_pred HhCC--ceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecc---cCChHHHHHHHhccccEEEecchhhhhccchHH
Confidence 7765 57888899876433221 13689999998732 2222233333 347899999999997643333
Q ss_pred HHHHHHHHHHHHhhccCCeeEEEEccc-CCC-hHHHHHHHhccccCceEEecCCcccccceeeEeeee------c-----
Q 000756 643 LESIVARTVRQIETTKEHIRLVGLSAT-LPN-YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQ------V----- 709 (1300)
Q Consensus 643 le~iv~rl~~~~~~~~~~~riV~LSAT-lpn-~~dva~~L~~~~~~~~~~f~~~~rpv~l~~~~~~~~------~----- 709 (1300)
+..++ ..+.+.| ++|+.| |.| ..++-..|..-..+ .|+..... +...|.... +
T Consensus 544 y~~LM--------~I~An~R-lLLTGTPLQNNL~ELiSLL~FvlP~---vF~~~~~d--l~~if~~k~~~d~d~e~~~l~ 609 (941)
T KOG0389|consen 544 YKHLM--------SINANFR-LLLTGTPLQNNLKELISLLAFVLPK---VFDSSMED--LDVIFKAKKTSDGDIENALLS 609 (941)
T ss_pred HHHhc--------cccccce-EEeeCCcccccHHHHHHHHHHHhhH---hhhccchH--HHHHHhccCCccchhhHHHHH
Confidence 43332 2345666 556666 333 34444333321110 12211110 000000000 0
Q ss_pred CchhHHHHH-HHHHHH----HHHHHHhC-CCeEEEEEcChHHHHHHHHHHHHHhh---cc---c--ccc--c--------
Q 000756 710 KKPLQRFQL-MNDLCY----EKVVAVAG-KHQVLIFVHSRKETAKTARAIRDTAL---EN---D--TLG--R-------- 765 (1300)
Q Consensus 710 ~~~~~~~~~-~~~~~~----~~i~~~~~-~~~vLVFv~sr~~~~~~a~~L~~~~~---~~---~--~l~--~-------- 765 (1300)
...+.+... |...+. +.|+...+ +.+.|.||.-.+.-..++..+.+... .. + ... .
T Consensus 610 qerIsrAK~im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~A 689 (941)
T KOG0389|consen 610 QERISRAKTIMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAA 689 (941)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHh
Confidence 001122222 122222 22333444 56778888765554444444433321 00 0 000 0
Q ss_pred ---c------------------cccC---chhHHH---------------HHhhhh--------------cccchhhh--
Q 000756 766 ---F------------------LKED---SVSREI---------------LQSHTD--------------MVKSNDLK-- 790 (1300)
Q Consensus 766 ---~------------------l~~~---~~~~~~---------------l~~~~~--------------~~~~~~L~-- 790 (1300)
+ ++.. ...... |+.... ..+...|+
T Consensus 690 nHPLL~R~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~L 769 (941)
T KOG0389|consen 690 NHPLLFRSIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKEL 769 (941)
T ss_pred cChhHHHHhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHH
Confidence 0 0000 000000 000000 00111222
Q ss_pred ----------------------------hhhcCCeEEecCCCCHHHHHHHHHHHhCC-Cc-cEEEeccccccccCCCCcE
Q 000756 791 ----------------------------DLLPYGFAIHHAGMTRGDRQLVEDLFGDG-HV-QVLVSTATLAWGVNLPAHT 840 (1300)
Q Consensus 791 ----------------------------~ll~~gv~~~Hagl~~~dR~~ve~~F~~g-~i-~VLVaT~tla~GVdlPav~ 840 (1300)
..+.+++.-+.|...-.+|..+.+.|-.. .| -.|.+|.+.+-||||-+.+
T Consensus 770 Lp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An 849 (941)
T KOG0389|consen 770 LPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCAN 849 (941)
T ss_pred HHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccc
Confidence 23345566678999999999999999643 34 4689999999999999999
Q ss_pred EEEecceeccCCCCCcccCCHHHHHHhhhccCCCCCCCceEEEEEeCCCcHHH-HHHhhcCCCCcccchhH
Q 000756 841 VIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRY-YLSLMNQQLPIESQFVS 910 (1300)
Q Consensus 841 vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d~~G~~iil~~~~~~~~-y~~ll~~~lPiES~l~~ 910 (1300)
+||-.+.-|+|- +=.|.--||-|.|..++-.++.+.+.+..+. ..++.+..+-+|+.+.+
T Consensus 850 ~VIihD~dFNP~----------dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt~ 910 (941)
T KOG0389|consen 850 TVIIHDIDFNPY----------DDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLTE 910 (941)
T ss_pred eEEEeecCCCCc----------ccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhcc
Confidence 998755555543 3456666777777667888888888877654 44555666666666554
No 162
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.60 E-value=1.3e-05 Score=95.22 Aligned_cols=297 Identities=15% Similarity=0.195 Sum_probs=184.2
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHhhhccc-------------CCcE-------EE-------------EEeCCCc------
Q 000756 549 SNYKIVYVAPMKALVAEVVGNLSNRLQM-------------YDVK-------VR-------------ELSGDQT------ 589 (1300)
Q Consensus 549 ~~~kiv~iaP~kaLa~q~~~~~~~~l~~-------------~gi~-------V~-------------~ltGd~~------ 589 (1300)
..+|||+|+|+|..|-++++.+.+.+.. +|+. .. .+.|+..
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlG 115 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLG 115 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEe
Confidence 4679999999999999999888776543 1200 00 0011110
Q ss_pred --cchh------hhccceEEEECcchHHHHHh----hcCCCcccccccEEEEecccccccCChhHHHHHHHHHHHHH---
Q 000756 590 --LTRQ------QIEETQIIVTTPEKWDIITR----KSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQI--- 654 (1300)
Q Consensus 590 --~~~~------~~~~~~IIV~TPekld~l~r----~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~--- 654 (1300)
+++. ...+++||||+|=-|..+.. +..+..+++.+.++|+|.+|.+.-..-..+..++..+..+-
T Consensus 116 ik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~ 195 (442)
T PF06862_consen 116 IKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKS 195 (442)
T ss_pred EEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCC
Confidence 0111 12468999999987755554 34566789999999999999887544445555555442211
Q ss_pred --------------hhccCCeeEEEEcccCCChHHHHHHHhc--cccCceEEecCCc--------ccccceeeEeeeecC
Q 000756 655 --------------ETTKEHIRLVGLSATLPNYEDVALFLRV--NLEKGLFYFDNSY--------RPVPLSQQYIGIQVK 710 (1300)
Q Consensus 655 --------------~~~~~~~riV~LSATlpn~~dva~~L~~--~~~~~~~~f~~~~--------rpv~l~~~~~~~~~~ 710 (1300)
.....-.|.|++|+... + ++...++. ....|...+...+ -.+++.|.|..++..
T Consensus 196 ~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~-p-e~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~ 273 (442)
T PF06862_consen 196 HDTDFSRVRPWYLDGQAKYYRQTIIFSSFQT-P-EINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCS 273 (442)
T ss_pred CCCCHHHHHHHHHcCcchheeEeEEecCCCC-H-HHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCC
Confidence 01122468999999853 3 33333322 1112222222222 234677777776654
Q ss_pred ch----hHHHHHHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccc
Q 000756 711 KP----LQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKS 786 (1300)
Q Consensus 711 ~~----~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~ 786 (1300)
.. ..++....+.++..+......+.+|||+||--+=.++-..|+...
T Consensus 274 s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~----------------------------- 324 (442)
T PF06862_consen 274 SPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKEN----------------------------- 324 (442)
T ss_pred CcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcC-----------------------------
Confidence 32 345666666666666543336789999999988888887776322
Q ss_pred hhhhhhhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccc--cccccCCCCcEEEEecceeccCCCCCcccCCHHHH
Q 000756 787 NDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTAT--LAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDI 864 (1300)
Q Consensus 787 ~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~t--la~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~ 864 (1300)
..++.+|.-.+..+-...-..|..|..+||+.|-= .=+-..|.++..||- |.+|.. +-=..++
T Consensus 325 --------~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viF----Y~~P~~---p~fY~El 389 (442)
T PF06862_consen 325 --------ISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIF----YGPPEN---PQFYSEL 389 (442)
T ss_pred --------CeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEE----ECCCCC---hhHHHHH
Confidence 23566788889999999999999999999999953 335566778888885 887763 1123445
Q ss_pred HHhhhccCC-CCCCCceEEEEEeCCCcH
Q 000756 865 MQMLGRAGR-PQYDSYGEGIIITGHSEL 891 (1300)
Q Consensus 865 lQr~GRAGR-~g~d~~G~~iil~~~~~~ 891 (1300)
+.|++.... .+....+.|.++++.-+.
T Consensus 390 ~n~~~~~~~~~~~~~~~~~~~lysk~D~ 417 (442)
T PF06862_consen 390 LNMLDESSGGEVDAADATVTVLYSKYDA 417 (442)
T ss_pred HhhhcccccccccccCceEEEEecHhHH
Confidence 555554432 111235677777775443
No 163
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.55 E-value=5.2e-07 Score=103.65 Aligned_cols=73 Identities=19% Similarity=0.210 Sum_probs=55.8
Q ss_pred CCHHHHHHHHH---HHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhh
Q 000756 496 LNRVQSRVYKS---ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (1300)
Q Consensus 496 ln~iQ~~~i~~---~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~ 572 (1300)
++|.|.+.+.. ++..++++++.||||+|||++++++++..+...... ..+.+++|.++|.++..+....+++
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-----~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-----IQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-----ccccceeEEeccHHHHHHHHHHHHh
Confidence 59999995544 345567899999999999999999998776653211 0234899999999998888777765
Q ss_pred h
Q 000756 573 R 573 (1300)
Q Consensus 573 ~ 573 (1300)
.
T Consensus 84 ~ 84 (289)
T smart00489 84 L 84 (289)
T ss_pred c
Confidence 4
No 164
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.55 E-value=5.2e-07 Score=103.65 Aligned_cols=73 Identities=19% Similarity=0.210 Sum_probs=55.8
Q ss_pred CCHHHHHHHHH---HHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhh
Q 000756 496 LNRVQSRVYKS---ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (1300)
Q Consensus 496 ln~iQ~~~i~~---~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~ 572 (1300)
++|.|.+.+.. ++..++++++.||||+|||++++++++..+...... ..+.+++|.++|.++..+....+++
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-----~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-----IQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-----ccccceeEEeccHHHHHHHHHHHHh
Confidence 59999995544 345567899999999999999999998776653211 0234899999999998888777765
Q ss_pred h
Q 000756 573 R 573 (1300)
Q Consensus 573 ~ 573 (1300)
.
T Consensus 84 ~ 84 (289)
T smart00488 84 L 84 (289)
T ss_pred c
Confidence 4
No 165
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=4.5e-06 Score=97.23 Aligned_cols=347 Identities=19% Similarity=0.237 Sum_probs=199.4
Q ss_pred CCCCHHHHHHHHHHHcCCCeEEEEccCCC---cc--HHHHHHHHHHHHHhccCC----------C--CC-----C---CC
Q 000756 494 TQLNRVQSRVYKSALSSADNILLCAPTGA---GK--TNVAVLTILQQLALNRND----------D--GS-----F---NH 548 (1300)
Q Consensus 494 ~~ln~iQ~~~i~~~l~~~~nvLi~APTGs---GK--T~va~l~il~~l~~~~~~----------~--g~-----~---~~ 548 (1300)
..+++.|.+.+..+++-.+ ++ .||++ |+ +-+|.+-+++++.+.+.. . |. + -.
T Consensus 215 ~pltalQ~~L~~~m~~YrD-l~--y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~ 291 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRD-LL--YPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGF 291 (698)
T ss_pred CcchHHHHHHHHHHHhhhh-hc--cccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCC
Confidence 3689999999998776655 43 35544 55 567888888888654320 0 10 0 12
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHhhhcccCCc---E-------EEEEeCCCcc----------------------------
Q 000756 549 SNYKIVYVAPMKALVAEVVGNLSNRLQMYDV---K-------VRELSGDQTL---------------------------- 590 (1300)
Q Consensus 549 ~~~kiv~iaP~kaLa~q~~~~~~~~l~~~gi---~-------V~~ltGd~~~---------------------------- 590 (1300)
..++||+|+|+|+-|-.++..+...+....- . -+++.|+...
T Consensus 292 tRpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ 371 (698)
T KOG2340|consen 292 TRPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLA 371 (698)
T ss_pred CCceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHH
Confidence 4679999999999999999999887542110 0 1223331110
Q ss_pred -chh------hhccceEEEECcchHHHHHhh----cCCCcccccccEEEEecccccccCChhHHHHHHHHHHHHHhhc--
Q 000756 591 -TRQ------QIEETQIIVTTPEKWDIITRK----SGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETT-- 657 (1300)
Q Consensus 591 -~~~------~~~~~~IIV~TPekld~l~r~----~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~-- 657 (1300)
+++ .+..++||||+|=-+.++... ..+..+++.+.++|||-+|.+....-..+..++..+..+-...
T Consensus 372 ftkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwEhl~~ifdHLn~~P~k~h~ 451 (698)
T KOG2340|consen 372 FTKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWEHLLHIFDHLNLQPSKQHD 451 (698)
T ss_pred HHHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHhhcCcccccC
Confidence 011 124689999999888777663 3456789999999999999987554445555555442211000
Q ss_pred --cCCe-------------eEEEEcccCCChHHHHHHHhcc--ccCceEEecC-----Ccc--cccceeeEeeeecCch-
Q 000756 658 --KEHI-------------RLVGLSATLPNYEDVALFLRVN--LEKGLFYFDN-----SYR--PVPLSQQYIGIQVKKP- 712 (1300)
Q Consensus 658 --~~~~-------------riV~LSATlpn~~dva~~L~~~--~~~~~~~f~~-----~~r--pv~l~~~~~~~~~~~~- 712 (1300)
.+.+ |++++|+-. + .++..++... ...|.+.+.+ +.+ -+|+.|.|..+.....
T Consensus 452 ~DfSRVR~wyL~~qsr~~rQtl~Fs~y~-~-~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~ 529 (698)
T KOG2340|consen 452 VDFSRVRMWYLDGQSRYFRQTLLFSRYS-H-PLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSII 529 (698)
T ss_pred CChhheehheeccHHHHHHHHHHHHhhc-c-HHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcc
Confidence 0112 344444431 1 2233332210 0112221111 122 2355555544443322
Q ss_pred ---hHHHHHHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhh
Q 000756 713 ---LQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDL 789 (1300)
Q Consensus 713 ---~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L 789 (1300)
..++......+...+.... ..-+||++||--+-.++-..++.....-
T Consensus 530 ~~~D~RFkyFv~~ImPq~~k~t-~s~~LiyIPSYfDFVRvRNy~K~e~i~F----------------------------- 579 (698)
T KOG2340|consen 530 ETPDARFKYFVDKIMPQLIKRT-ESGILIYIPSYFDFVRVRNYMKKEEISF----------------------------- 579 (698)
T ss_pred cCchHHHHHHHHhhchhhcccc-cCceEEEecchhhHHHHHHHhhhhhcch-----------------------------
Confidence 2344443332222221111 3468999999988888877776543211
Q ss_pred hhhhcCCeEEecCCCCHHHHHHHHHHHhCCCccEEEeccc--cccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHh
Q 000756 790 KDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTAT--LAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQM 867 (1300)
Q Consensus 790 ~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~t--la~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr 867 (1300)
+.+|.-.+++.-.+.-+.|-.|..+||+-|-- .-+-.++.++.-||. |.||.. +.=..+++.|
T Consensus 580 --------~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVf----YqpP~~---P~FYsEiinm 644 (698)
T KOG2340|consen 580 --------VMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVF----YQPPNN---PHFYSEIINM 644 (698)
T ss_pred --------HHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEE----ecCCCC---cHHHHHHHhh
Confidence 11233333444455567899999999999954 346678889998997 777753 2235688999
Q ss_pred hhccCCCC--CCCceEEEEEeCCCc
Q 000756 868 LGRAGRPQ--YDSYGEGIIITGHSE 890 (1300)
Q Consensus 868 ~GRAGR~g--~d~~G~~iil~~~~~ 890 (1300)
.||+.-.| ....-.|.++++.-+
T Consensus 645 ~~k~~~~gn~d~d~~t~~ilytKyD 669 (698)
T KOG2340|consen 645 SDKTTSQGNTDLDIFTVRILYTKYD 669 (698)
T ss_pred hhhhhccCCccccceEEEEEeechh
Confidence 99875433 344556777776544
No 166
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.35 E-value=3.1e-05 Score=93.24 Aligned_cols=142 Identities=18% Similarity=0.242 Sum_probs=98.3
Q ss_pred CCCHHHHHHHHHHHcC----CCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHH
Q 000756 495 QLNRVQSRVYKSALSS----ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1300)
Q Consensus 495 ~ln~iQ~~~i~~~l~~----~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~ 570 (1300)
.+-|+|..++..+.-. ..--|+...-|-|||+...-.|+..-......++..+... +.++|||. +|+.|+..++
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~-~TLII~Pa-Sli~qW~~Ev 402 (901)
T KOG4439|consen 325 ELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESAS-KTLIICPA-SLIHQWEAEV 402 (901)
T ss_pred ecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccC-CeEEeCcH-HHHHHHHHHH
Confidence 5778999998876532 2236788899999999766666654433322223222333 69999997 6789999999
Q ss_pred hhhcccCCcEEEEEeCCC--ccchhhhccceEEEECcchHHH----HHhhcCCCcccccc--cEEEEecccccccC
Q 000756 571 SNRLQMYDVKVRELSGDQ--TLTRQQIEETQIIVTTPEKWDI----ITRKSGDRTYTQLV--KLLIIDEIHLLHDN 638 (1300)
Q Consensus 571 ~~~l~~~gi~V~~ltGd~--~~~~~~~~~~~IIV~TPekld~----l~r~~~~~~~l~~v--~liIiDEaH~l~d~ 638 (1300)
.+++...-++|..++|.. ....+.+..++|+|||+.-... =+...+....+..| .-||+||||.+.+.
T Consensus 403 ~~rl~~n~LsV~~~HG~n~r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~ 478 (901)
T KOG4439|consen 403 ARRLEQNALSVYLYHGPNKREISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNS 478 (901)
T ss_pred HHHHhhcceEEEEecCCccccCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhccc
Confidence 999998889999999986 3445667889999999873211 01122233344444 46999999998764
No 167
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.35 E-value=4.4e-05 Score=100.74 Aligned_cols=137 Identities=19% Similarity=0.188 Sum_probs=82.9
Q ss_pred CeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcccCCcEEEEEeCCCccc
Q 000756 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLT 591 (1300)
Q Consensus 512 ~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~~gi~V~~ltGd~~~~ 591 (1300)
...+|.=-||||||+.....+-..+.. ...++|++|+-++.|-.|+.+.|+.+...... +. -..+...-
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~---------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~-~~-~~~s~~~L 342 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLEL---------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFN-DP-KAESTSEL 342 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhc---------cCCCeEEEEechHHHHHHHHHHHHHHHHhhhh-cc-cccCHHHH
Confidence 358999999999999765554433333 13568999999999999999999886432211 11 11111111
Q ss_pred hhhhc--cceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEEccc
Q 000756 592 RQQIE--ETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (1300)
Q Consensus 592 ~~~~~--~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LSAT 669 (1300)
++.+. ...|||||-.||............-..=-+||+||||.-..+ . + -.++ ...-++...+|+|.|
T Consensus 343 k~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~G--~-~---~~~~----~~~~~~a~~~gFTGT 412 (962)
T COG0610 343 KELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQYG--E-L---AKLL----KKALKKAIFIGFTGT 412 (962)
T ss_pred HHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcccc--H-H---HHHH----HHHhccceEEEeeCC
Confidence 22222 358999999998555433211111222237999999984322 1 1 1112 112334788999999
No 168
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=98.23 E-value=3.7e-05 Score=88.78 Aligned_cols=165 Identities=21% Similarity=0.250 Sum_probs=103.9
Q ss_pred CHHHHHHHHHHHcCCC----eEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhh
Q 000756 497 NRVQSRVYKSALSSAD----NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (1300)
Q Consensus 497 n~iQ~~~i~~~l~~~~----nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~ 572 (1300)
-|+|.+-+..+....+ --++.-.-|.|||..+.-.++.... +...++++|+.||. |+.+++..
T Consensus 186 L~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~~------------ra~tLVvaP~VAlm-QW~nEI~~ 252 (791)
T KOG1002|consen 186 LPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEVD------------RAPTLVVAPTVALM-QWKNEIER 252 (791)
T ss_pred hhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhccc------------cCCeeEEccHHHHH-HHHHHHHH
Confidence 4556665544332211 1477889999999988666665332 23489999999975 77777766
Q ss_pred hcccCCcEEEEEeCCCc-cchhhhccceEEEECcchHHHHHhhcC-----------CCccccccc--EEEEecccccccC
Q 000756 573 RLQMYDVKVRELSGDQT-LTRQQIEETQIIVTTPEKWDIITRKSG-----------DRTYTQLVK--LLIIDEIHLLHDN 638 (1300)
Q Consensus 573 ~l~~~gi~V~~ltGd~~-~~~~~~~~~~IIV~TPekld~l~r~~~-----------~~~~l~~v~--liIiDEaH~l~d~ 638 (1300)
... -..+|..++|... .+-+.+.+++++.+|...+....|+.. ..+.+.+++ -||+||||.+.+.
T Consensus 253 ~T~-gslkv~~YhG~~R~~nikel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R 331 (791)
T KOG1002|consen 253 HTS-GSLKVYIYHGAKRDKNIKELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDR 331 (791)
T ss_pred hcc-CceEEEEEecccccCCHHHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhcccccc
Confidence 444 3478888888653 445667899999999998877777621 234455555 4999999998764
Q ss_pred ChhHHHHHHHHHHHHHhhccCCeeEEEEcccC-CC-h---HHHHHHHhccc
Q 000756 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATL-PN-Y---EDVALFLRVNL 684 (1300)
Q Consensus 639 rg~~le~iv~rl~~~~~~~~~~~riV~LSATl-pn-~---~dva~~L~~~~ 684 (1300)
+.....++.+ + + ..+..+||.|. .| . -.+-+||+.+|
T Consensus 332 ~snTArAV~~-L----~----tt~rw~LSGTPLQNrigElySLiRFL~i~P 373 (791)
T KOG1002|consen 332 QSNTARAVFA-L----E----TTYRWCLSGTPLQNRIGELYSLIRFLNINP 373 (791)
T ss_pred cccHHHHHHh-h----H----hhhhhhccCCcchhhHHHHHHHHHHHccCc
Confidence 3322222221 1 1 12337888882 23 1 13456666654
No 169
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.05 E-value=2.3e-05 Score=88.05 Aligned_cols=128 Identities=16% Similarity=0.143 Sum_probs=92.4
Q ss_pred CCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhc
Q 000756 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1300)
Q Consensus 495 ~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l 574 (1300)
.|++.|.-+.-.+..+ -|+...||-|||+++.+++.-.... +..|-+|+...-||..=+..+...+
T Consensus 77 ~p~~vQll~~l~L~~G---~laEm~TGEGKTli~~l~a~~~AL~-----------G~~V~vvT~NdyLA~RD~~~~~~~y 142 (266)
T PF07517_consen 77 RPYDVQLLGALALHKG---RLAEMKTGEGKTLIAALPAALNALQ-----------GKGVHVVTSNDYLAKRDAEEMRPFY 142 (266)
T ss_dssp ---HHHHHHHHHHHTT---SEEEESTTSHHHHHHHHHHHHHHTT-----------SS-EEEEESSHHHHHHHHHHHHHHH
T ss_pred cccHHHHhhhhhcccc---eeEEecCCCCcHHHHHHHHHHHHHh-----------cCCcEEEeccHHHhhccHHHHHHHH
Confidence 6788888887655433 3899999999999987766544433 3468888999999999999999999
Q ss_pred ccCCcEEEEEeCCCccch-hhhccceEEEECcchH--HHHHhhcC---CCcccccccEEEEecccccc
Q 000756 575 QMYDVKVRELSGDQTLTR-QQIEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLLH 636 (1300)
Q Consensus 575 ~~~gi~V~~ltGd~~~~~-~~~~~~~IIV~TPekl--d~l~r~~~---~~~~l~~v~liIiDEaH~l~ 636 (1300)
..+|++|+..+++.+... +..-.++|+++|...+ |.|..+.. .........++|||||+.+.
T Consensus 143 ~~LGlsv~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 143 EFLGLSVGIITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHTT--EEEEETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHhhhccccCccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 999999999999876433 3445788999999985 55554432 12235678999999999754
No 170
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.04 E-value=0.00014 Score=91.43 Aligned_cols=111 Identities=15% Similarity=0.132 Sum_probs=82.4
Q ss_pred EEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcccCCcEEEEEeCCCccch-
Q 000756 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTR- 592 (1300)
Q Consensus 514 vLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~~gi~V~~ltGd~~~~~- 592 (1300)
-+.-+-||-|||+++.+|+.-.... +..+-++...--||.--.......+..+|++|+....+.....
T Consensus 96 ~iaEM~TGEGKTL~atlp~ylnaL~-----------gkgVhvVTvNdYLA~RDae~m~~l~~~LGlsvG~~~~~m~~~ek 164 (822)
T COG0653 96 DIAEMRTGEGKTLVATLPAYLNALA-----------GKGVHVVTVNDYLARRDAEWMGPLYEFLGLSVGVILAGMSPEEK 164 (822)
T ss_pred ceeeeecCCchHHHHHHHHHHHhcC-----------CCCcEEeeehHHhhhhCHHHHHHHHHHcCCceeeccCCCChHHH
Confidence 5888999999999998887533222 2347778888889998888888888899999999888776553
Q ss_pred hhhccceEEEECcchH--HHHHhhc---CCCcccccccEEEEeccccc
Q 000756 593 QQIEETQIIVTTPEKW--DIITRKS---GDRTYTQLVKLLIIDEIHLL 635 (1300)
Q Consensus 593 ~~~~~~~IIV~TPekl--d~l~r~~---~~~~~l~~v~liIiDEaH~l 635 (1300)
+..-.++|.++|-..+ |.+.-.. .+..+.....+.|+||++-+
T Consensus 165 ~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSI 212 (822)
T COG0653 165 RAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSI 212 (822)
T ss_pred HHHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhe
Confidence 3456899999998874 4443322 12234556788999999865
No 171
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.03 E-value=2.4e-05 Score=86.72 Aligned_cols=75 Identities=32% Similarity=0.380 Sum_probs=49.8
Q ss_pred CCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhh
Q 000756 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (1300)
Q Consensus 495 ~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~ 572 (1300)
+||+-|.+|+..++....-.+|.||.|+|||.+..-.+...+.... ......+.++++++|+.+.+.++...+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~---~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFK---SRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH----------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchh---hhhhhccccceeecCCchhHHHHHHHHHh
Confidence 4799999999998876444899999999999766544444321100 00012356899999999999999999988
No 172
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=97.91 E-value=9.1e-05 Score=95.15 Aligned_cols=53 Identities=28% Similarity=0.233 Sum_probs=44.0
Q ss_pred CccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCCCCCCceEE
Q 000756 820 HVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEG 882 (1300)
Q Consensus 820 ~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d~~G~~ 882 (1300)
.++.|++-++|..|-|-|.+-+|.. ..... |...-.|.+||.-|...|..|+-
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~----l~~~~------s~~~~~q~~gr~lr~~vnq~G~R 553 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAK----LRSSG------SETSKLQEVGRGLRLPVDENGHR 553 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEE----eccCC------chHHHHHHhccceeccccccCcc
Confidence 6899999999999999999988875 44332 67788999999999888777754
No 173
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.88 E-value=7.1e-05 Score=80.83 Aligned_cols=145 Identities=22% Similarity=0.317 Sum_probs=71.5
Q ss_pred CCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHH---HH
Q 000756 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV---GN 569 (1300)
Q Consensus 493 ~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~---~~ 569 (1300)
++-.|+-|..++.+++ ..+.+++.||.|||||++++.+.++.+..+. --+++|+-|..+...++- ..
T Consensus 2 I~p~~~~Q~~~~~al~-~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~---------~~kiii~Rp~v~~~~~lGflpG~ 71 (205)
T PF02562_consen 2 IKPKNEEQKFALDALL-NNDLVIVNGPAGTGKTFLALAAALELVKEGE---------YDKIIITRPPVEAGEDLGFLPGD 71 (205)
T ss_dssp ----SHHHHHHHHHHH-H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS----------SEEEEEE-S--TT----SS---
T ss_pred ccCCCHHHHHHHHHHH-hCCeEEEECCCCCcHHHHHHHHHHHHHHhCC---------CcEEEEEecCCCCccccccCCCC
Confidence 3456899999999988 5578999999999999999999999887632 347999988865322110 00
Q ss_pred HhhhcccC----CcEEEEEeCCCccchhhhccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccCChhHHHH
Q 000756 570 LSNRLQMY----DVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLES 645 (1300)
Q Consensus 570 ~~~~l~~~----gi~V~~ltGd~~~~~~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~ 645 (1300)
+.+++.++ --....+.|... -...+....|-+..+.- .|.. .+ + -.+||+|||+.+. ...+..
T Consensus 72 ~~eK~~p~~~p~~d~l~~~~~~~~-~~~~~~~~~Ie~~~~~~----iRGr---t~-~-~~~iIvDEaQN~t---~~~~k~ 138 (205)
T PF02562_consen 72 LEEKMEPYLRPIYDALEELFGKEK-LEELIQNGKIEIEPLAF----IRGR---TF-D-NAFIIVDEAQNLT---PEELKM 138 (205)
T ss_dssp ------TTTHHHHHHHTTTS-TTC-HHHHHHTTSEEEEEGGG----GTT-----B---SEEEEE-SGGG-----HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhChHh-HHHHhhcCeEEEEehhh----hcCc---cc-c-ceEEEEecccCCC---HHHHHH
Confidence 01111000 000000001111 11122344555655541 2211 12 1 2799999999875 444555
Q ss_pred HHHHHHHHHhhccCCeeEEEEc
Q 000756 646 IVARTVRQIETTKEHIRLVGLS 667 (1300)
Q Consensus 646 iv~rl~~~~~~~~~~~riV~LS 667 (1300)
+++|+ ..+.++|++-
T Consensus 139 ilTR~-------g~~skii~~G 153 (205)
T PF02562_consen 139 ILTRI-------GEGSKIIITG 153 (205)
T ss_dssp HHTTB--------TT-EEEEEE
T ss_pred HHccc-------CCCcEEEEec
Confidence 66554 5677777764
No 174
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.82 E-value=9.4e-05 Score=80.24 Aligned_cols=64 Identities=25% Similarity=0.385 Sum_probs=47.3
Q ss_pred CCCHHHHHHHHHHHcCCC-eEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHH
Q 000756 495 QLNRVQSRVYKSALSSAD-NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (1300)
Q Consensus 495 ~ln~iQ~~~i~~~l~~~~-nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~ 569 (1300)
+||+-|.+++..++.+++ -.+|+||.|+|||.+. -.+...+... +.++++++||...+.++.+.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~~----------g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEAA----------GKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHHT----------T--EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHhC----------CCeEEEECCcHHHHHHHHHh
Confidence 478999999999987754 4678899999999864 3455555542 45899999999988887666
No 175
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=97.74 E-value=0.0016 Score=78.57 Aligned_cols=84 Identities=20% Similarity=0.158 Sum_probs=65.2
Q ss_pred eEEecCCCCHHHHHHHHHHHhCCCc-cEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCCC
Q 000756 797 FAIHHAGMTRGDRQLVEDLFGDGHV-QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQ 875 (1300)
Q Consensus 797 v~~~Hagl~~~dR~~ve~~F~~g~i-~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g 875 (1300)
..-+.|.....+|..+...|....+ -.|++|.+.+-||||.+.+.||-++.-|+|. -=.|.+.||-|.|
T Consensus 1071 ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT----------~D~QAMDRAHRLG 1140 (1185)
T KOG0388|consen 1071 YLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPT----------ADQQAMDRAHRLG 1140 (1185)
T ss_pred eEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEEecCCCCcc----------hhhHHHHHHHhcc
Confidence 3445788889999999999987655 4688999999999999999999755555554 3467888888888
Q ss_pred CCCceEEEEEeCCCc
Q 000756 876 YDSYGEGIIITGHSE 890 (1300)
Q Consensus 876 ~d~~G~~iil~~~~~ 890 (1300)
..+.-.+|.+.+...
T Consensus 1141 QTrdvtvyrl~~rgT 1155 (1185)
T KOG0388|consen 1141 QTRDVTVYRLITRGT 1155 (1185)
T ss_pred Cccceeeeeeccccc
Confidence 667777777776554
No 176
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.74 E-value=0.00013 Score=87.30 Aligned_cols=80 Identities=23% Similarity=0.306 Sum_probs=65.6
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHH
Q 000756 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1300)
Q Consensus 491 ~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~ 570 (1300)
+|...||.-|..|+..++.. .--||.||+|+|||.+..-.+.+.+..+ .+.|++.+|.-..+.|+++.+
T Consensus 406 ~~lpkLN~SQ~~AV~~VL~r-plsLIQGPPGTGKTvtsa~IVyhl~~~~----------~~~VLvcApSNiAVDqLaeKI 474 (935)
T KOG1802|consen 406 PNLPKLNASQSNAVKHVLQR-PLSLIQGPPGTGKTVTSATIVYHLARQH----------AGPVLVCAPSNIAVDQLAEKI 474 (935)
T ss_pred CCchhhchHHHHHHHHHHcC-CceeeecCCCCCceehhHHHHHHHHHhc----------CCceEEEcccchhHHHHHHHH
Confidence 67889999999999999876 4579999999999998876666666654 457999999999999998887
Q ss_pred hhhcccCCcEEEEEe
Q 000756 571 SNRLQMYDVKVRELS 585 (1300)
Q Consensus 571 ~~~l~~~gi~V~~lt 585 (1300)
.+- |++|..+.
T Consensus 475 h~t----gLKVvRl~ 485 (935)
T KOG1802|consen 475 HKT----GLKVVRLC 485 (935)
T ss_pred Hhc----CceEeeee
Confidence 653 67776664
No 177
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=97.73 E-value=0.00039 Score=87.22 Aligned_cols=127 Identities=22% Similarity=0.279 Sum_probs=80.9
Q ss_pred CCCCHHHHHHHHH---HHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHH
Q 000756 494 TQLNRVQSRVYKS---ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1300)
Q Consensus 494 ~~ln~iQ~~~i~~---~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~ 570 (1300)
.++.++|..-+.. +|+++=|-++.-.+|-|||..-.-.|...+ .+....| + -++|+|+-.|. .+..+|
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLm-E~K~~~G------P-~LvivPlstL~-NW~~Ef 463 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLM-EHKQMQG------P-FLIIVPLSTLV-NWSSEF 463 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHH-HHcccCC------C-eEEeccccccC-Cchhhc
Confidence 3788899888765 456777889999999999987654444433 3322222 2 57789997776 344455
Q ss_pred hhhcccCCcEEEEEeCCCcc----chhh-hccceEEEECcchHHHHHhhcCCCcccccc--cEEEEeccccccc
Q 000756 571 SNRLQMYDVKVRELSGDQTL----TRQQ-IEETQIIVTTPEKWDIITRKSGDRTYTQLV--KLLIIDEIHLLHD 637 (1300)
Q Consensus 571 ~~~l~~~gi~V~~ltGd~~~----~~~~-~~~~~IIV~TPekld~l~r~~~~~~~l~~v--~liIiDEaH~l~d 637 (1300)
.++.. .+..+...|.... ..+. ....+|+++|.|.. .+ +..+++.| .++||||-|.|..
T Consensus 464 ~kWaP--Sv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyi---ik---dk~lLsKI~W~yMIIDEGHRmKN 529 (1157)
T KOG0386|consen 464 PKWAP--SVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYI---IK---DKALLSKISWKYMIIDEGHRMKN 529 (1157)
T ss_pred ccccc--ceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHh---cC---CHHHHhccCCcceeecccccccc
Confidence 44322 4555556664322 1121 25789999999963 22 33344444 5799999999864
No 178
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.70 E-value=0.00025 Score=90.12 Aligned_cols=68 Identities=31% Similarity=0.383 Sum_probs=56.9
Q ss_pred CCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhh
Q 000756 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (1300)
Q Consensus 494 ~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~ 572 (1300)
..||+.|.+|+..++...+.++|.||+|+|||.+..-.+.+.+.. +.+|++++|+...|.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~-----------g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKR-----------GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHc-----------CCCEEEEcCcHHHHHHHHHHHHh
Confidence 478999999999998877889999999999998776555555443 34799999999999999888876
No 179
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.57 E-value=0.00016 Score=86.64 Aligned_cols=67 Identities=27% Similarity=0.399 Sum_probs=58.4
Q ss_pred CCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHh
Q 000756 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (1300)
Q Consensus 494 ~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~ 571 (1300)
+.+++-|.+|+..+.+..+-++|.||+|+|||......|.+.+.++ .+||+.+|+..-+..+.+++.
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~-----------k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQK-----------KRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcC-----------CeEEEEcCchHHHHHHHHHhc
Confidence 4789999999999988877789999999999999888888887763 489999999999999988654
No 180
>PRK10536 hypothetical protein; Provisional
Probab=97.49 E-value=0.00019 Score=79.63 Aligned_cols=60 Identities=20% Similarity=0.226 Sum_probs=44.7
Q ss_pred CCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHH
Q 000756 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561 (1300)
Q Consensus 492 g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~ka 561 (1300)
++.-.|..|...+..+.. .+.+++.||+|+|||+++....++.+.... -.++++.=|...
T Consensus 56 ~i~p~n~~Q~~~l~al~~-~~lV~i~G~aGTGKT~La~a~a~~~l~~~~---------~~kIiI~RP~v~ 115 (262)
T PRK10536 56 PILARNEAQAHYLKAIES-KQLIFATGEAGCGKTWISAAKAAEALIHKD---------VDRIIVTRPVLQ 115 (262)
T ss_pred cccCCCHHHHHHHHHHhc-CCeEEEECCCCCCHHHHHHHHHHHHHhcCC---------eeEEEEeCCCCC
Confidence 456678899999886654 578999999999999999888887664321 235676767654
No 181
>PF13245 AAA_19: Part of AAA domain
Probab=97.48 E-value=0.00042 Score=62.88 Aligned_cols=61 Identities=25% Similarity=0.393 Sum_probs=44.4
Q ss_pred HHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHH
Q 000756 503 VYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1300)
Q Consensus 503 ~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~ 570 (1300)
++..++.++..++|.||.|||||..+.-.+...+..... .+.+|++++|++..+.++.+++
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~-------~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARAD-------PGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcC-------CCCeEEEECCCHHHHHHHHHHH
Confidence 455455544556669999999998777777666643211 1447999999999999998887
No 182
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.28 E-value=0.00053 Score=72.44 Aligned_cols=129 Identities=19% Similarity=0.306 Sum_probs=76.9
Q ss_pred CCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHHH
Q 000756 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLV 812 (1300)
Q Consensus 733 ~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~v 812 (1300)
++.+|||++|....+.+...+...... .++.++.. ...++..+
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~-----------------------------------~~~~v~~q--~~~~~~~~ 51 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEE-----------------------------------KGIPVFVQ--GSKSRDEL 51 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E------------------------------------ETSCEEES--TCCHHHHH
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhccc-----------------------------------ccceeeec--CcchHHHH
Confidence 589999999999888887766543211 11222232 35678888
Q ss_pred HHHHhCCCccEEEecc--ccccccCCCC--cEEEEecceeccCCCC----------------Cc----ccCCHHHHHHhh
Q 000756 813 EDLFGDGHVQVLVSTA--TLAWGVNLPA--HTVIIKGTQIYNPEKG----------------AW----TELSPLDIMQML 868 (1300)
Q Consensus 813 e~~F~~g~i~VLVaT~--tla~GVdlPa--v~vVI~~t~~yd~~~g----------------~~----~~~S~~d~lQr~ 868 (1300)
.+.|+.+.-.||+|+. .++.|||+|+ .+.||-...+|-++.. .+ .+.....+.|.+
T Consensus 52 l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~ 131 (167)
T PF13307_consen 52 LEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAI 131 (167)
T ss_dssp HHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHH
T ss_pred HHHHHhccCeEEEEEecccEEEeecCCCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhc
Confidence 9999999999999998 9999999996 3344444445543321 01 122345677999
Q ss_pred hccCCCCCCCceEEEEEeCCCcHHHHHHhhc
Q 000756 869 GRAGRPQYDSYGEGIIITGHSELRYYLSLMN 899 (1300)
Q Consensus 869 GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~ 899 (1300)
||+-|.. +..|..+++-..-....|.+.+.
T Consensus 132 GR~iR~~-~D~g~i~llD~R~~~~~y~~~l~ 161 (167)
T PF13307_consen 132 GRLIRSE-DDYGVIILLDSRFLSKRYGKYLP 161 (167)
T ss_dssp HCC--ST-T-EEEEEEESGGGGGHHHHHH-T
T ss_pred Ccceecc-CCcEEEEEEcCccccchhhhcCc
Confidence 9999975 45677766655444455555443
No 183
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.15 E-value=0.0017 Score=70.85 Aligned_cols=145 Identities=22% Similarity=0.296 Sum_probs=91.9
Q ss_pred CCChhhHhhcCCCCCCCHHHHHHHHHHHcC--CCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcC
Q 000756 481 EMPEWAQPAFKGMTQLNRVQSRVYKSALSS--ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (1300)
Q Consensus 481 ~Lp~~~~~~f~g~~~ln~iQ~~~i~~~l~~--~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP 558 (1300)
+-|+|+.--+.+---+++.|.++....... +.|.+...-+|.|||.|. +|++..+... | ..-+.+++|
T Consensus 9 ~~P~wLl~E~e~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI-~Pmla~~LAd----g-----~~LvrviVp 78 (229)
T PF12340_consen 9 EYPDWLLFEIESNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVI-VPMLALALAD----G-----SRLVRVIVP 78 (229)
T ss_pred hChHHHHHHHHcCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchH-HHHHHHHHcC----C-----CcEEEEEcC
Confidence 457887655544457899999999988763 578999999999999986 4555544432 1 223445555
Q ss_pred cHHHHHHHHHHHhhhcccC-CcEE--EEEeCCCccchh-----------hhccceEEEECcchHHHHHhhcC--------
Q 000756 559 MKALVAEVVGNLSNRLQMY-DVKV--RELSGDQTLTRQ-----------QIEETQIIVTTPEKWDIITRKSG-------- 616 (1300)
Q Consensus 559 ~kaLa~q~~~~~~~~l~~~-gi~V--~~ltGd~~~~~~-----------~~~~~~IIV~TPekld~l~r~~~-------- 616 (1300)
++|..|....+..+++.. +-+| ..+.-+...+.. ......|+++|||.+..+.-+..
T Consensus 79 -k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~ 157 (229)
T PF12340_consen 79 -KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKP 157 (229)
T ss_pred -HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCH
Confidence 589999999999988743 3233 334444444332 12355699999998533211110
Q ss_pred --------CCcccccccEEEEecccccc
Q 000756 617 --------DRTYTQLVKLLIIDEIHLLH 636 (1300)
Q Consensus 617 --------~~~~l~~v~liIiDEaH~l~ 636 (1300)
-..++.....=|+||+|.+.
T Consensus 158 ~~~~~l~~~q~~l~~~~rdilDEsDe~L 185 (229)
T PF12340_consen 158 EEARELLKIQKWLDEHSRDILDESDEIL 185 (229)
T ss_pred HHHHHHHHHHHHHHhcCCeEeECchhcc
Confidence 01233444557888888753
No 184
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.97 E-value=0.0072 Score=76.06 Aligned_cols=70 Identities=21% Similarity=0.252 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhc
Q 000756 498 RVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1300)
Q Consensus 498 ~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l 574 (1300)
..|..++..++.+ ..++|+|+.|+|||++..-.+ ..+....... .+.+|++++||---|..+.+......
T Consensus 148 ~~Qk~A~~~al~~-~~~vitGgpGTGKTt~v~~ll-~~l~~~~~~~-----~~~~I~l~APTGkAA~rL~e~~~~~~ 217 (586)
T TIGR01447 148 NWQKVAVALALKS-NFSLITGGPGTGKTTTVARLL-LALVKQSPKQ-----GKLRIALAAPTGKAAARLAESLRKAV 217 (586)
T ss_pred HHHHHHHHHHhhC-CeEEEEcCCCCCHHHHHHHHH-HHHHHhcccc-----CCCcEEEECCcHHHHHHHHHHHHhhh
Confidence 7999999998875 679999999999998754322 2222211100 12479999999888888777765543
No 185
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.91 E-value=0.0017 Score=75.41 Aligned_cols=123 Identities=21% Similarity=0.203 Sum_probs=76.1
Q ss_pred CCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcc
Q 000756 496 LNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ 575 (1300)
Q Consensus 496 ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~ 575 (1300)
||+-|.+++.. .+.+++|.|+.|||||.+...-+++.+.... .+..+||++++|++.|.++..++...+.
T Consensus 1 l~~eQ~~~i~~---~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~-------~~~~~Il~lTft~~aa~e~~~ri~~~l~ 70 (315)
T PF00580_consen 1 LTDEQRRIIRS---TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG-------VPPERILVLTFTNAAAQEMRERIRELLE 70 (315)
T ss_dssp S-HHHHHHHHS----SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-------STGGGEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC---CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-------CChHHheecccCHHHHHHHHHHHHHhcC
Confidence 57889999986 3568999999999999998888887776652 1345799999999999999999988765
Q ss_pred cCCcEEEEEeCCCccchhhhccceEEEECcchH-HHHHhhc-CCCcccccccEEEEeccc
Q 000756 576 MYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRKS-GDRTYTQLVKLLIIDEIH 633 (1300)
Q Consensus 576 ~~gi~V~~ltGd~~~~~~~~~~~~IIV~TPekl-d~l~r~~-~~~~~l~~v~liIiDEaH 633 (1300)
..+... ..+............+.|+|-..| ..+.+.. ..... .-.+-|+|+..
T Consensus 71 ~~~~~~---~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~--~~~~~i~~~~~ 125 (315)
T PF00580_consen 71 EEQQES---SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGI--DPNFEILDEEE 125 (315)
T ss_dssp HCCHCC---TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTS--HTTTEEECHHH
T ss_pred cccccc---cccccccccccccchheeehhhhhhhhhhhhhhhhhhc--cccceeecchh
Confidence 321100 000001111112345788887775 3344433 21111 12456667665
No 186
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=96.89 E-value=0.05 Score=70.58 Aligned_cols=52 Identities=27% Similarity=0.328 Sum_probs=46.3
Q ss_pred cccccCCCHHHHHHHHhCCCcchhhccCChHHHhhhhcCCcchHHHHHHHhc
Q 000756 1144 LRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQ 1195 (1300)
Q Consensus 1144 L~Q~p~i~~~~i~~le~~~~~~~~l~~l~~~el~~ll~~~~~g~~i~~~~~~ 1195 (1300)
|+.|||+++..+++|-.+=-++.++..++.+|+.++++.++.++.|+++++.
T Consensus 759 L~~lPgI~~~~a~~ll~~f~si~~l~~as~eeL~~~iG~~~~A~~i~~fl~~ 810 (814)
T TIGR00596 759 LLKLPGVTKKNYRNLRKKVKSIRELAKLSQNELNELIGDEEAAKRLYDFLRT 810 (814)
T ss_pred HHHCCCCCHHHHHHHHHHcCCHHHHHhCCHHHHHHHhCCHHHHHHHHHHhcc
Confidence 7799999999999988763389999999999999999978889999999875
No 187
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.87 E-value=0.0053 Score=77.37 Aligned_cols=72 Identities=19% Similarity=0.188 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcc
Q 000756 496 LNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ 575 (1300)
Q Consensus 496 ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~ 575 (1300)
..++|..|+..++.+ .-++|.|++|+|||++..-.+ ..+..... ....+|++++||---|..+.+.....+.
T Consensus 153 ~~d~Qk~Av~~a~~~-~~~vItGgpGTGKTt~v~~ll-~~l~~~~~------~~~~~i~l~APTgkAA~rL~e~~~~~~~ 224 (615)
T PRK10875 153 EVDWQKVAAAVALTR-RISVISGGPGTGKTTTVAKLL-AALIQLAD------GERCRIRLAAPTGKAAARLTESLGKALR 224 (615)
T ss_pred CCHHHHHHHHHHhcC-CeEEEEeCCCCCHHHHHHHHH-HHHHHhcC------CCCcEEEEECCcHHHHHHHHHHHHhhhh
Confidence 358999999988875 568999999999998753322 22222100 0135788999999888888887765444
No 188
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.86 E-value=0.0084 Score=77.83 Aligned_cols=63 Identities=14% Similarity=0.192 Sum_probs=48.3
Q ss_pred CCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHH
Q 000756 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567 (1300)
Q Consensus 494 ~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~ 567 (1300)
..|++-|.+++..++.++..++|.|+.|+|||++.- ++...+... +.+|++++||--.+..+.
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~-~i~~~~~~~----------g~~V~~~ApTg~Aa~~L~ 413 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLK-AAREAWEAA----------GYRVIGAALSGKAAEGLQ 413 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHH-HHHHHHHhC----------CCeEEEEeCcHHHHHHHH
Confidence 368999999999998877788999999999998643 344444332 457999999977665553
No 189
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.84 E-value=0.008 Score=79.14 Aligned_cols=62 Identities=13% Similarity=0.102 Sum_probs=48.2
Q ss_pred CCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHH
Q 000756 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (1300)
Q Consensus 494 ~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~ 566 (1300)
..|++-|.+++..++.+++.++|.|+.|+|||++ +-++...+... +.+|+.++||-..|..+
T Consensus 345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~~----------G~~V~~~ApTGkAA~~L 406 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEAA----------GYEVRGAALSGIAAENL 406 (988)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHHc----------CCeEEEecCcHHHHHHH
Confidence 3699999999999998777789999999999986 34444444432 46899999997766554
No 190
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.75 E-value=0.0034 Score=74.62 Aligned_cols=95 Identities=19% Similarity=0.259 Sum_probs=59.3
Q ss_pred eEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcccCCcEEEEEeCCCccch
Q 000756 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTR 592 (1300)
Q Consensus 513 nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~~gi~V~~ltGd~~~~~ 592 (1300)
.++|.|..|||||++++-.+... ... ..+.+++|+++..+|...+...+.+....
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l-~~~--------~~~~~~~~l~~n~~l~~~l~~~l~~~~~~---------------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL-QNS--------EEGKKVLYLCGNHPLRNKLREQLAKKYNP---------------- 57 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh-hcc--------ccCCceEEEEecchHHHHHHHHHhhhccc----------------
Confidence 57999999999999986554443 111 12457999999999999888888664300
Q ss_pred hhhccceEEEECcchHHHHHhhcCCCcccccccEEEEeccccccc
Q 000756 593 QQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD 637 (1300)
Q Consensus 593 ~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d 637 (1300)
......+..|..+ +............+++|||||||.|..
T Consensus 58 ---~~~~~~~~~~~~~--i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 58 ---KLKKSDFRKPTSF--INNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred ---chhhhhhhhhHHH--HhhcccccccCCcCCEEEEehhHhhhh
Confidence 0111223333322 110001123445789999999999876
No 191
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=96.73 E-value=0.01 Score=67.31 Aligned_cols=161 Identities=17% Similarity=0.102 Sum_probs=98.4
Q ss_pred CCCHHHHHHHHHHHc---------CCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHH
Q 000756 495 QLNRVQSRVYKSALS---------SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAE 565 (1300)
Q Consensus 495 ~ln~iQ~~~i~~~l~---------~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q 565 (1300)
.|...|.+++--+.. .+.-.++--.||.||.-...-.|+..+.++ ..|.|++...-.|-..
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G----------r~r~vwvS~s~dL~~D 106 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG----------RKRAVWVSVSNDLKYD 106 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC----------CCceEEEECChhhhhH
Confidence 578888888755432 133578888999999887777777777764 2369999999999999
Q ss_pred HHHHHhhhcccCCcEEEEEeCCCccchhhhccceEEEECcchHHHHHhhc-CCCcccc---------cccEEEEeccccc
Q 000756 566 VVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS-GDRTYTQ---------LVKLLIIDEIHLL 635 (1300)
Q Consensus 566 ~~~~~~~~l~~~gi~V~~ltGd~~~~~~~~~~~~IIV~TPekld~l~r~~-~~~~~l~---------~v~liIiDEaH~l 635 (1300)
..++|+..-.. .+.+..+..- .......-.-.||++|+-.+-.-.+.. .....++ .=.+||+||||..
T Consensus 107 a~RDl~DIG~~-~i~v~~l~~~-~~~~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~a 184 (303)
T PF13872_consen 107 AERDLRDIGAD-NIPVHPLNKF-KYGDIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKA 184 (303)
T ss_pred HHHHHHHhCCC-cccceechhh-ccCcCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhc
Confidence 99999875432 3444333321 101111123469999988653332211 1111111 1258999999998
Q ss_pred ccC-C----hhHHHHHHHHHHHHHhhccCCeeEEEEcccCC
Q 000756 636 HDN-R----GPVLESIVARTVRQIETTKEHIRLVGLSATLP 671 (1300)
Q Consensus 636 ~d~-r----g~~le~iv~rl~~~~~~~~~~~riV~LSATlp 671 (1300)
... . +......+..+ ...-++.|+|-+|||-.
T Consensus 185 kn~~~~~~~~sk~g~avl~L----Q~~LP~ARvvY~SATga 221 (303)
T PF13872_consen 185 KNLSSGSKKPSKTGIAVLEL----QNRLPNARVVYASATGA 221 (303)
T ss_pred CCCCccCccccHHHHHHHHH----HHhCCCCcEEEeccccc
Confidence 652 1 12233333333 22346789999999943
No 192
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.70 E-value=0.0036 Score=62.77 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=16.9
Q ss_pred CCCeEEEEccCCCccHHHHHHHHHHH
Q 000756 510 SADNILLCAPTGAGKTNVAVLTILQQ 535 (1300)
Q Consensus 510 ~~~nvLi~APTGsGKT~va~l~il~~ 535 (1300)
+...++|+||+|+|||.++...+-..
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHh
Confidence 34578999999999999876655443
No 193
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.68 E-value=0.014 Score=75.58 Aligned_cols=64 Identities=17% Similarity=0.230 Sum_probs=47.0
Q ss_pred CCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHH
Q 000756 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567 (1300)
Q Consensus 494 ~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~ 567 (1300)
..+++-|.+|+..+..+ ..++|.|+.|+|||++.- +++..+.... ....++.++||-..|..+.
T Consensus 322 ~~l~~~Q~~Ai~~~~~~-~~~iitGgpGTGKTt~l~-~i~~~~~~~~--------~~~~v~l~ApTg~AA~~L~ 385 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQH-KVVILTGGPGTGKTTITR-AIIELAEELG--------GLLPVGLAAPTGRAAKRLG 385 (720)
T ss_pred CCCCHHHHHHHHHHHhC-CeEEEECCCCCCHHHHHH-HHHHHHHHcC--------CCceEEEEeCchHHHHHHH
Confidence 37899999999998754 579999999999998663 4444444321 0146888999988776543
No 194
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=96.67 E-value=0.007 Score=75.47 Aligned_cols=57 Identities=25% Similarity=0.289 Sum_probs=46.4
Q ss_pred CCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCCCCCCceEEEE
Q 000756 818 DGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGII 884 (1300)
Q Consensus 818 ~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d~~G~~ii 884 (1300)
+...+.|++-.+|-.|-|=|+|-.|++ ..+.. |..+=+|-+||.-|-.-+..|+-+.
T Consensus 481 d~plRFIFS~waLrEGWDNPNVFtIck----L~~S~------SeiSK~QeVGRGLRLaVNe~G~RV~ 537 (985)
T COG3587 481 DEPLRFIFSKWALREGWDNPNVFTICK----LRSSG------SEISKLQEVGRGLRLAVNENGERVT 537 (985)
T ss_pred CCcceeeeehhHHhhcCCCCCeeEEEE----ecCCC------cchHHHHHhccceeeeeccccceec
Confidence 356899999999999999999999997 54443 7788899999999976666665543
No 195
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.62 E-value=0.0094 Score=60.13 Aligned_cols=22 Identities=41% Similarity=0.647 Sum_probs=17.6
Q ss_pred CCeEEEEccCCCccHHHHHHHH
Q 000756 511 ADNILLCAPTGAGKTNVAVLTI 532 (1300)
Q Consensus 511 ~~nvLi~APTGsGKT~va~l~i 532 (1300)
...+++.||+|+|||..+...+
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~ 40 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIA 40 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 5679999999999998664433
No 196
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.47 E-value=0.069 Score=64.40 Aligned_cols=149 Identities=21% Similarity=0.218 Sum_probs=79.1
Q ss_pred EEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhccc-CCcEEEEEeCCCccchh-
Q 000756 516 LCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQM-YDVKVRELSGDQTLTRQ- 593 (1300)
Q Consensus 516 i~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~-~gi~V~~ltGd~~~~~~- 593 (1300)
..+.||||||.+..-.||....++. .+-++.+..-..+.-....|..-... +=.+-....+|....-+
T Consensus 2 f~matgsgkt~~ma~lil~~y~kgy----------r~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikk 71 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKGY----------RNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKK 71 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhch----------hhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeee
Confidence 4578999999998888888877653 24566666655555554444332210 00000111112111100
Q ss_pred ------hhccceEEEECcchH-HHHHhhc-C--CCcccccccE-EEEecccccccC----------ChhHHHHHHHHHHH
Q 000756 594 ------QIEETQIIVTTPEKW-DIITRKS-G--DRTYTQLVKL-LIIDEIHLLHDN----------RGPVLESIVARTVR 652 (1300)
Q Consensus 594 ------~~~~~~IIV~TPekl-d~l~r~~-~--~~~~l~~v~l-iIiDEaH~l~d~----------rg~~le~iv~rl~~ 652 (1300)
......|.++|-..+ ..++|.. . ....+.+.++ ++-||+|+|... --..+|+.|...+
T Consensus 72 vn~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~- 150 (812)
T COG3421 72 VNNFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLAL- 150 (812)
T ss_pred ecccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHH-
Confidence 123567999999986 3333322 1 1223344455 566999999541 1123444333222
Q ss_pred HHhhccCCeeEEEEcccCCChHHHHH
Q 000756 653 QIETTKEHIRLVGLSATLPNYEDVAL 678 (1300)
Q Consensus 653 ~~~~~~~~~riV~LSATlpn~~dva~ 678 (1300)
...+.--++.+|||+|.-.+|..
T Consensus 151 ---~~nkd~~~lef~at~~k~k~v~~ 173 (812)
T COG3421 151 ---EQNKDNLLLEFSATIPKEKSVED 173 (812)
T ss_pred ---hcCCCceeehhhhcCCccccHHH
Confidence 22445556778999986555543
No 197
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.44 E-value=0.041 Score=65.64 Aligned_cols=132 Identities=14% Similarity=0.173 Sum_probs=73.1
Q ss_pred CeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcccCCcEEEEEeCCCccc
Q 000756 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLT 591 (1300)
Q Consensus 512 ~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~~gi~V~~ltGd~~~~ 591 (1300)
..++++||||+|||+++.-.+.+....... .| ....++.+=+.|.-+.++...+.+.+ |+.+..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~-~g----~~V~lit~Dt~R~aa~eQL~~~a~~l---gvpv~~-------- 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDD-KS----LNIKIITIDNYRIGAKKQIQTYGDIM---GIPVKA-------- 238 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhcc-CC----CeEEEEeccCccHHHHHHHHHHhhcC---CcceEe--------
Confidence 478999999999998775444333222100 01 12334444566777777776665543 443311
Q ss_pred hhhhccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCC-eeEEEEcccC
Q 000756 592 RQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEH-IRLVGLSATL 670 (1300)
Q Consensus 592 ~~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~-~riV~LSATl 670 (1300)
+-++..+.....+ ++..++||||++...+.+ .. -+.++...+.....+ -.++.||||.
T Consensus 239 ----------~~~~~~l~~~L~~------~~~~DlVLIDTaGr~~~~----~~-~l~el~~~l~~~~~~~e~~LVlsat~ 297 (388)
T PRK12723 239 ----------IESFKDLKEEITQ------SKDFDLVLVDTIGKSPKD----FM-KLAEMKELLNACGRDAEFHLAVSSTT 297 (388)
T ss_pred ----------eCcHHHHHHHHHH------hCCCCEEEEcCCCCCccC----HH-HHHHHHHHHHhcCCCCeEEEEEcCCC
Confidence 1133333222222 245799999999987532 11 134444444433333 4678899996
Q ss_pred CChHHHHHHHh
Q 000756 671 PNYEDVALFLR 681 (1300)
Q Consensus 671 pn~~dva~~L~ 681 (1300)
...++.+.+.
T Consensus 298 -~~~~~~~~~~ 307 (388)
T PRK12723 298 -KTSDVKEIFH 307 (388)
T ss_pred -CHHHHHHHHH
Confidence 4566665554
No 198
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.33 E-value=0.034 Score=73.77 Aligned_cols=64 Identities=17% Similarity=0.162 Sum_probs=48.7
Q ss_pred CCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHH
Q 000756 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567 (1300)
Q Consensus 493 ~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~ 567 (1300)
-..|++-|.+++..+..++.-++|.|+.|+|||++.- ++...+.. .+.+|+-++||-.-|..+.
T Consensus 379 ~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~-~~~~~~e~----------~G~~V~g~ApTgkAA~~L~ 442 (1102)
T PRK13826 379 HARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMK-AAREAWEA----------AGYRVVGGALAGKAAEGLE 442 (1102)
T ss_pred CCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHH-HHHHHHHH----------cCCeEEEEcCcHHHHHHHH
Confidence 3479999999999887667788999999999998653 33444433 2568999999977666553
No 199
>PRK12377 putative replication protein; Provisional
Probab=96.20 E-value=0.049 Score=61.19 Aligned_cols=48 Identities=17% Similarity=0.347 Sum_probs=30.2
Q ss_pred CCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHH
Q 000756 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1300)
Q Consensus 511 ~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~ 570 (1300)
..+++++||+|+|||..+. +|.+.+... +..++|+ +...|..++...+
T Consensus 101 ~~~l~l~G~~GtGKThLa~-AIa~~l~~~----------g~~v~~i-~~~~l~~~l~~~~ 148 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAA-AIGNRLLAK----------GRSVIVV-TVPDVMSRLHESY 148 (248)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHHc----------CCCeEEE-EHHHHHHHHHHHH
Confidence 4689999999999998764 444444432 2235444 5556666654443
No 200
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.16 E-value=0.054 Score=58.78 Aligned_cols=129 Identities=19% Similarity=0.171 Sum_probs=69.6
Q ss_pred eEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcccCCcEEEEEeCCCccch
Q 000756 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTR 592 (1300)
Q Consensus 513 nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~~gi~V~~ltGd~~~~~ 592 (1300)
.++++||||+|||+...-.+.+...++ ....++.+=..|.=+.++.+.+.+.+ |+.+....-..
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~---------~~v~lis~D~~R~ga~eQL~~~a~~l---~vp~~~~~~~~---- 66 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKG---------KKVALISADTYRIGAVEQLKTYAEIL---GVPFYVARTES---- 66 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT-----------EEEEEESTSSTHHHHHHHHHHHHH---TEEEEESSTTS----
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhcc---------ccceeecCCCCCccHHHHHHHHHHHh---ccccchhhcch----
Confidence 478999999999987765544444331 12334444557888888888887665 44433211100
Q ss_pred hhhccceEEEECcch-HHHHHhhcCCCcccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEEcccCC
Q 000756 593 QQIEETQIIVTTPEK-WDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671 (1300)
Q Consensus 593 ~~~~~~~IIV~TPek-ld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LSATlp 671 (1300)
.|.. +....++. ..+++++|+||-+.+. +.-...+..+........+.--++.+|||..
T Consensus 67 -----------~~~~~~~~~l~~~----~~~~~D~vlIDT~Gr~-----~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~ 126 (196)
T PF00448_consen 67 -----------DPAEIAREALEKF----RKKGYDLVLIDTAGRS-----PRDEELLEELKKLLEALNPDEVHLVLSATMG 126 (196)
T ss_dssp -----------CHHHHHHHHHHHH----HHTTSSEEEEEE-SSS-----STHHHHHHHHHHHHHHHSSSEEEEEEEGGGG
T ss_pred -----------hhHHHHHHHHHHH----hhcCCCEEEEecCCcc-----hhhHHHHHHHHHHhhhcCCccceEEEecccC
Confidence 0111 11111111 1234689999988653 3333444444444444455667788999975
Q ss_pred ChHHHHH
Q 000756 672 NYEDVAL 678 (1300)
Q Consensus 672 n~~dva~ 678 (1300)
. +++..
T Consensus 127 ~-~~~~~ 132 (196)
T PF00448_consen 127 Q-EDLEQ 132 (196)
T ss_dssp G-HHHHH
T ss_pred h-HHHHH
Confidence 4 44443
No 201
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.14 E-value=0.01 Score=67.95 Aligned_cols=64 Identities=25% Similarity=0.269 Sum_probs=49.0
Q ss_pred CCCCCCHHHHHHHHHHHcCC-CeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHH
Q 000756 492 GMTQLNRVQSRVYKSALSSA-DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALV 563 (1300)
Q Consensus 492 g~~~ln~iQ~~~i~~~l~~~-~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa 563 (1300)
|++-.|..|.-|++.++..+ +-|.+.++.|||||+.|+.+.+......+ ...|+|+.=|+..+.
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~--------~y~KiiVtRp~vpvG 289 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERK--------RYRKIIVTRPTVPVG 289 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHh--------hhceEEEecCCcCcc
Confidence 78888999999999887654 34668899999999999988887665532 134788887876654
No 202
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.13 E-value=0.069 Score=67.97 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=25.2
Q ss_pred eE-EEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEc
Q 000756 513 NI-LLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA 557 (1300)
Q Consensus 513 nv-Li~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~ia 557 (1300)
++ +|+||||+|||.+.-..+ +.+.......+ ...+.++||=
T Consensus 782 nvLYIyG~PGTGKTATVK~VL-rELqeeaeqk~---lp~f~vVYIN 823 (1164)
T PTZ00112 782 QILYISGMPGTGKTATVYSVI-QLLQHKTKQKL---LPSFNVFEIN 823 (1164)
T ss_pred ceEEEECCCCCCHHHHHHHHH-HHHHHHHhhcc---CCCceEEEEe
Confidence 44 599999999999886543 44433211111 2246788883
No 203
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.09 E-value=0.017 Score=69.03 Aligned_cols=61 Identities=25% Similarity=0.427 Sum_probs=43.9
Q ss_pred CCCHHHHHHHHHHH-----cCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHH
Q 000756 495 QLNRVQSRVYKSAL-----SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (1300)
Q Consensus 495 ~ln~iQ~~~i~~~l-----~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~ 566 (1300)
.||+-|.+++..++ ..+.+++|.||-|+|||.+.- ++...+.. .+..++++|||-..|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~-~i~~~~~~----------~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIK-AIIDYLRS----------RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHH-HHHHHhcc----------ccceEEEecchHHHHHhc
Confidence 47899999988773 345689999999999998753 22233322 245799999997766555
No 204
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.08 E-value=0.029 Score=70.59 Aligned_cols=80 Identities=26% Similarity=0.257 Sum_probs=51.7
Q ss_pred CCCHHHHHHHHHHHc---CCCeEEEEccCCCccHHHHHHHH---HHHHHhccC-------C-----------CCCC----
Q 000756 495 QLNRVQSRVYKSALS---SADNILLCAPTGAGKTNVAVLTI---LQQLALNRN-------D-----------DGSF---- 546 (1300)
Q Consensus 495 ~ln~iQ~~~i~~~l~---~~~nvLi~APTGsGKT~va~l~i---l~~l~~~~~-------~-----------~g~~---- 546 (1300)
.|++.|...+..++. ...|.++-.|||+|||+..+-.. .+....... . .|..
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 568888877766553 34678999999999998655433 333331000 0 0000
Q ss_pred ------CCCCcEEEEEcCcHHHHHHHHHHHhhhc
Q 000756 547 ------NHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1300)
Q Consensus 547 ------~~~~~kiv~iaP~kaLa~q~~~~~~~~l 574 (1300)
...-++|.|-.-|-+=..|+++++++..
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~ 134 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTG 134 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcC
Confidence 0135788998888888889998887643
No 205
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.04 E-value=0.17 Score=63.27 Aligned_cols=156 Identities=15% Similarity=0.189 Sum_probs=88.4
Q ss_pred CCHHHHHHHHHHH---cCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhh
Q 000756 496 LNRVQSRVYKSAL---SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (1300)
Q Consensus 496 ln~iQ~~~i~~~l---~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~ 572 (1300)
++|.=.+-++.++ +. .-.++.+|=|.|||.+..+.+...+... +.+|+|++|...-++++++.+..
T Consensus 170 ~~~~~~~~id~~~~~fkq-~~tV~taPRqrGKS~iVgi~l~~La~f~----------Gi~IlvTAH~~~ts~evF~rv~~ 238 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGK-CYTAATVPRRCGKTTIMAIILAAMISFL----------EIDIVVQAQRKTMCLTLYNRVET 238 (752)
T ss_pred CChhhHHHHHHHHHHHhh-cceEEEeccCCCcHHHHHHHHHHHHHhc----------CCeEEEECCChhhHHHHHHHHHH
Confidence 3444444444443 33 3367789999999998877766554321 35899999999999999999888
Q ss_pred hcccCC--------cEEEEEeCCCc-cc----hhh-hccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccC
Q 000756 573 RLQMYD--------VKVRELSGDQT-LT----RQQ-IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDN 638 (1300)
Q Consensus 573 ~l~~~g--------i~V~~ltGd~~-~~----~~~-~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~ 638 (1300)
.+..++ -++....|+.. .. ... ...+.|.+++-. . +...-..++++|+|||+.+.+
T Consensus 239 ~le~lg~~~~fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars--------~-~s~RG~~~DLLIVDEAAfI~~- 308 (752)
T PHA03333 239 VVHAYQHKPWFPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASS--------P-NAARGQNPDLVIVDEAAFVNP- 308 (752)
T ss_pred HHHHhccccccCCCceEEEeeCCeeEEEEecCcccccCcceeEEeccc--------C-CCcCCCCCCEEEEECcccCCH-
Confidence 776433 11222233221 00 000 011233332211 1 111113568999999999874
Q ss_pred ChhHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHh
Q 000756 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLR 681 (1300)
Q Consensus 639 rg~~le~iv~rl~~~~~~~~~~~riV~LSATlpn~~dva~~L~ 681 (1300)
+.++.++--+ .....+++.+|.+- .....-.+|.
T Consensus 309 --~~l~aIlP~l------~~~~~k~IiISS~~-~~~s~tS~L~ 342 (752)
T PHA03333 309 --GALLSVLPLM------AVKGTKQIHISSPV-DADSWISRVG 342 (752)
T ss_pred --HHHHHHHHHH------ccCCCceEEEeCCC-CcchHHHHhh
Confidence 4455544322 23467788888774 2334444443
No 206
>PRK06526 transposase; Provisional
Probab=95.90 E-value=0.048 Score=61.57 Aligned_cols=28 Identities=25% Similarity=0.501 Sum_probs=21.2
Q ss_pred cCCCeEEEEccCCCccHHHHHHHHHHHH
Q 000756 509 SSADNILLCAPTGAGKTNVAVLTILQQL 536 (1300)
Q Consensus 509 ~~~~nvLi~APTGsGKT~va~l~il~~l 536 (1300)
....|++++||+|+|||..+.-......
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~ 123 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRAC 123 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHH
Confidence 4567999999999999988765443333
No 207
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.89 E-value=0.017 Score=74.13 Aligned_cols=84 Identities=26% Similarity=0.268 Sum_probs=64.6
Q ss_pred CCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhh
Q 000756 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (1300)
Q Consensus 494 ~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~ 573 (1300)
..||+-|.+++.. +.++++|.|..|||||.+..--+...+..... .+.+|++++.++..|.++.+++..+
T Consensus 195 ~~L~~~Q~~av~~---~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~-------~~~~IL~ltft~~AA~em~eRL~~~ 264 (684)
T PRK11054 195 SPLNPSQARAVVN---GEDSLLVLAGAGSGKTSVLVARAGWLLARGQA-------QPEQILLLAFGRQAAEEMDERIRER 264 (684)
T ss_pred CCCCHHHHHHHhC---CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCC-------CHHHeEEEeccHHHHHHHHHHHHHh
Confidence 4689999998863 44678999999999999987766666654311 2457999999999999999998776
Q ss_pred cccCCcEEEEEeCCCccchhhhccceEEEECcchH
Q 000756 574 LQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW 608 (1300)
Q Consensus 574 l~~~gi~V~~ltGd~~~~~~~~~~~~IIV~TPekl 608 (1300)
++ ...|-|+|-..|
T Consensus 265 lg---------------------~~~v~v~TFHSl 278 (684)
T PRK11054 265 LG---------------------TEDITARTFHAL 278 (684)
T ss_pred cC---------------------CCCcEEEeHHHH
Confidence 42 034778888886
No 208
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=95.88 E-value=0.015 Score=74.97 Aligned_cols=92 Identities=20% Similarity=0.153 Sum_probs=67.8
Q ss_pred CCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhc
Q 000756 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1300)
Q Consensus 495 ~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l 574 (1300)
.||+-|.+|+.. ...+++|.|..|||||.+...-|.+.+.... ..+.+|++++.|+..|.++..++.+.+
T Consensus 2 ~Ln~~Q~~av~~---~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~-------v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG-------YQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC-------CCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 489999998864 3467999999999999998887777775421 124579999999999999999987765
Q ss_pred ccCCcEEEEEeCCCccchhhhccceEEEECcchH-HHHHhh
Q 000756 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRK 614 (1300)
Q Consensus 575 ~~~gi~V~~ltGd~~~~~~~~~~~~IIV~TPekl-d~l~r~ 614 (1300)
+.. ....+.|+|...| ..+.|.
T Consensus 72 ~~~------------------~~~~v~i~TfHS~~~~iLr~ 94 (672)
T PRK10919 72 GRK------------------EARGLMISTFHTLGLDIIKR 94 (672)
T ss_pred Ccc------------------cccCcEEEcHHHHHHHHHHH
Confidence 310 0124778998886 334443
No 209
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=95.83 E-value=0.031 Score=71.36 Aligned_cols=139 Identities=15% Similarity=0.162 Sum_probs=87.7
Q ss_pred CCCHHHHHHHHH---HHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHh
Q 000756 495 QLNRVQSRVYKS---ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (1300)
Q Consensus 495 ~ln~iQ~~~i~~---~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~ 571 (1300)
.|+.+|..-++. +|+.+=|-|+.-.-|-|||..- +.++.++...... -++ -|||+||--+ -.+.-+|+
T Consensus 615 qLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQt-ISllAhLACeegn------WGP-HLIVVpTsvi-LnWEMElK 685 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQT-ISLLAHLACEEGN------WGP-HLIVVPTSVI-LNWEMELK 685 (1958)
T ss_pred HHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHH-HHHHHHHHhcccC------CCC-ceEEeechhh-hhhhHHHh
Confidence 567788877764 5677788999999999999754 3344444432111 123 4667888443 34555666
Q ss_pred hhcccCCcEEEEEeCCCccchhh---h---ccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccCChhHHHH
Q 000756 572 NRLQMYDVKVRELSGDQTLTRQQ---I---EETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLES 645 (1300)
Q Consensus 572 ~~l~~~gi~V~~ltGd~~~~~~~---~---~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~ 645 (1300)
+++. |+++..++|.....+.. + +..||.|+++..+ ++.... ..-.+..++|+||+|.+...+...+++
T Consensus 686 RwcP--glKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv---~qd~~A-FkrkrWqyLvLDEaqnIKnfksqrWQA 759 (1958)
T KOG0391|consen 686 RWCP--GLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLV---FQDLTA-FKRKRWQYLVLDEAQNIKNFKSQRWQA 759 (1958)
T ss_pred hhCC--cceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHH---HhHHHH-HHhhccceeehhhhhhhcchhHHHHHH
Confidence 6544 78999999976543322 2 2357888887653 111110 011235799999999998766666776
Q ss_pred HHH
Q 000756 646 IVA 648 (1300)
Q Consensus 646 iv~ 648 (1300)
++.
T Consensus 760 lln 762 (1958)
T KOG0391|consen 760 LLN 762 (1958)
T ss_pred Hhc
Confidence 654
No 210
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.80 E-value=0.099 Score=61.98 Aligned_cols=127 Identities=19% Similarity=0.190 Sum_probs=66.3
Q ss_pred cCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEc--CcHHHHHHHHHHHhhhcccCCcEEEEEeC
Q 000756 509 SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA--PMKALVAEVVGNLSNRLQMYDVKVRELSG 586 (1300)
Q Consensus 509 ~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~ia--P~kaLa~q~~~~~~~~l~~~gi~V~~ltG 586 (1300)
..+.+++++||||+|||+.+...+.+..... | ..+|.++. +.|.-+.++...|.+.+ |+.+.
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~----G-----~~~V~lit~D~~R~ga~EqL~~~a~~~---gv~~~---- 198 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRF----G-----ASKVALLTTDSYRIGGHEQLRIFGKIL---GVPVH---- 198 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhc----C-----CCeEEEEecccccccHHHHHHHHHHHc---CCceE----
Confidence 4467899999999999987765554443332 0 12343333 22444666666665543 33222
Q ss_pred CCccchhhhccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEE
Q 000756 587 DQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGL 666 (1300)
Q Consensus 587 d~~~~~~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~L 666 (1300)
.+.+++.+.....+. .+.++|+||.+=... +...+...+..+. ......-+++.+
T Consensus 199 --------------~~~~~~~l~~~l~~l------~~~DlVLIDTaG~~~--~d~~l~e~La~L~---~~~~~~~~lLVL 253 (374)
T PRK14722 199 --------------AVKDGGDLQLALAEL------RNKHMVLIDTIGMSQ--RDRTVSDQIAMLH---GADTPVQRLLLL 253 (374)
T ss_pred --------------ecCCcccHHHHHHHh------cCCCEEEEcCCCCCc--ccHHHHHHHHHHh---ccCCCCeEEEEe
Confidence 233444332223322 345899999996532 1122222233221 112234567889
Q ss_pred cccCCChHHHH
Q 000756 667 SATLPNYEDVA 677 (1300)
Q Consensus 667 SATlpn~~dva 677 (1300)
|||.. .+++.
T Consensus 254 sAts~-~~~l~ 263 (374)
T PRK14722 254 NATSH-GDTLN 263 (374)
T ss_pred cCccC-hHHHH
Confidence 99953 34443
No 211
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.77 E-value=0.053 Score=61.70 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=17.8
Q ss_pred CeEEEEccCCCccHHHHHHHH
Q 000756 512 DNILLCAPTGAGKTNVAVLTI 532 (1300)
Q Consensus 512 ~nvLi~APTGsGKT~va~l~i 532 (1300)
.++++.||+|+|||.++-...
T Consensus 43 ~~vll~GppGtGKTtlA~~ia 63 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILG 63 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHH
Confidence 479999999999999886544
No 212
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.77 E-value=0.16 Score=56.96 Aligned_cols=26 Identities=27% Similarity=0.537 Sum_probs=19.7
Q ss_pred CeEEEEccCCCccHHHHHHHHHHHHHh
Q 000756 512 DNILLCAPTGAGKTNVAVLTILQQLAL 538 (1300)
Q Consensus 512 ~nvLi~APTGsGKT~va~l~il~~l~~ 538 (1300)
.+++++||+|+|||..+. +|...+..
T Consensus 100 ~~~~l~G~~GtGKThLa~-aia~~l~~ 125 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAA-AICNELLL 125 (244)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHh
Confidence 479999999999998775 44455543
No 213
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.74 E-value=0.04 Score=62.73 Aligned_cols=125 Identities=18% Similarity=0.188 Sum_probs=63.7
Q ss_pred CeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcccCCcEEEEEeCCCccc
Q 000756 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLT 591 (1300)
Q Consensus 512 ~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~~gi~V~~ltGd~~~~ 591 (1300)
.|++|+|+||.|||.+..- ....|......-...-+.+++-+|...-....+..+-..+ |..... .+ ...
T Consensus 62 p~lLivG~snnGKT~Ii~r----F~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~l---gaP~~~--~~-~~~ 131 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIER----FRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEAL---GAPYRP--RD-RVA 131 (302)
T ss_pred CceEEecCCCCcHHHHHHH----HHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHh---CcccCC--CC-CHH
Confidence 4899999999999986532 2223322111101122456666787776666666654433 221110 00 000
Q ss_pred hhhhccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEE
Q 000756 592 RQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGL 666 (1300)
Q Consensus 592 ~~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~L 666 (1300)
.. .. +...+.|.. .++++||||+|.+..+....-..++.-+ +.+. ..-.+.+|++
T Consensus 132 ~~---~~--------~~~~llr~~-------~vrmLIIDE~H~lLaGs~~~qr~~Ln~L-K~L~-NeL~ipiV~v 186 (302)
T PF05621_consen 132 KL---EQ--------QVLRLLRRL-------GVRMLIIDEFHNLLAGSYRKQREFLNAL-KFLG-NELQIPIVGV 186 (302)
T ss_pred HH---HH--------HHHHHHHHc-------CCcEEEeechHHHhcccHHHHHHHHHHH-HHHh-hccCCCeEEe
Confidence 00 00 011334433 3799999999998765444444444433 3322 2335666766
No 214
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.70 E-value=0.16 Score=64.43 Aligned_cols=145 Identities=19% Similarity=0.269 Sum_probs=92.3
Q ss_pred CCCHHHHHHHHHHHcCCC-eEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhh
Q 000756 495 QLNRVQSRVYKSALSSAD-NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (1300)
Q Consensus 495 ~ln~iQ~~~i~~~l~~~~-nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~ 573 (1300)
....-|.+.|..++..+. -+++.|.=|=|||.++-+++....... ....|++++|+++-++.++.-..+.
T Consensus 214 ~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~---------~~~~iiVTAP~~~nv~~Lf~fa~~~ 284 (758)
T COG1444 214 EDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLA---------GSVRIIVTAPTPANVQTLFEFAGKG 284 (758)
T ss_pred hhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhc---------CCceEEEeCCCHHHHHHHHHHHHHh
Confidence 334445556677777655 788999999999999888773333221 0347999999999999999888887
Q ss_pred cccCCcEEEEEeCC-CccchhhhccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccCChhHHHHHHHHHHH
Q 000756 574 LQMYDVKVRELSGD-QTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVR 652 (1300)
Q Consensus 574 l~~~gi~V~~ltGd-~~~~~~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~ 652 (1300)
+..+|.+-...... .......-....|=+-+|..- . ..-+++|||||=-+. -|.++.++.+
T Consensus 285 l~~lg~~~~v~~d~~g~~~~~~~~~~~i~y~~P~~a-----------~-~~~DllvVDEAAaIp---lplL~~l~~~--- 346 (758)
T COG1444 285 LEFLGYKRKVAPDALGEIREVSGDGFRIEYVPPDDA-----------Q-EEADLLVVDEAAAIP---LPLLHKLLRR--- 346 (758)
T ss_pred HHHhCCccccccccccceeeecCCceeEEeeCcchh-----------c-ccCCEEEEehhhcCC---hHHHHHHHhh---
Confidence 77766542221111 111111112344666777631 1 114799999998775 3444444432
Q ss_pred HHhhccCCeeEEEEcccCCChH
Q 000756 653 QIETTKEHIRLVGLSATLPNYE 674 (1300)
Q Consensus 653 ~~~~~~~~~riV~LSATlpn~~ 674 (1300)
.+.|.||.|+-.|+
T Consensus 347 --------~~rv~~sTTIhGYE 360 (758)
T COG1444 347 --------FPRVLFSTTIHGYE 360 (758)
T ss_pred --------cCceEEEeeecccc
Confidence 34599999998775
No 215
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.67 E-value=0.29 Score=57.79 Aligned_cols=142 Identities=16% Similarity=0.232 Sum_probs=78.3
Q ss_pred CCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEc-CcHHHHHHHHHHHhhhcccCCcEEEEEeCCCc
Q 000756 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA-PMKALVAEVVGNLSNRLQMYDVKVRELSGDQT 589 (1300)
Q Consensus 511 ~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~ia-P~kaLa~q~~~~~~~~l~~~gi~V~~ltGd~~ 589 (1300)
+..+.+.||||.|||+...-.+.+....... ....++.. -.|.=|.++...+.+.+ |+.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~--------~kVaiITtDtYRIGA~EQLk~Ya~im---~vp~-------- 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKK--------KKVAIITTDTYRIGAVEQLKTYADIM---GVPL-------- 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccC--------cceEEEEeccchhhHHHHHHHHHHHh---CCce--------
Confidence 5789999999999987654433444322211 11233333 34666777777776654 3322
Q ss_pred cchhhhccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEEccc
Q 000756 590 LTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (1300)
Q Consensus 590 ~~~~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LSAT 669 (1300)
.+|-+|.-|+.-.. .+++.++|.||=+-+ ++.=...++.+...+....+--..+.||||
T Consensus 264 ----------~vv~~~~el~~ai~------~l~~~d~ILVDTaGr-----s~~D~~~i~el~~~~~~~~~i~~~Lvlsat 322 (407)
T COG1419 264 ----------EVVYSPKELAEAIE------ALRDCDVILVDTAGR-----SQYDKEKIEELKELIDVSHSIEVYLVLSAT 322 (407)
T ss_pred ----------EEecCHHHHHHHHH------HhhcCCEEEEeCCCC-----CccCHHHHHHHHHHHhccccceEEEEEecC
Confidence 23444544432221 344568888887744 222222333333333333344556789999
Q ss_pred CCChHHHHHHHhccccCceEEecCCcccccceeeEe
Q 000756 670 LPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYI 705 (1300)
Q Consensus 670 lpn~~dva~~L~~~~~~~~~~f~~~~rpv~l~~~~~ 705 (1300)
..++|+.+-+. .|+.+|+...++
T Consensus 323 -~K~~dlkei~~------------~f~~~~i~~~I~ 345 (407)
T COG1419 323 -TKYEDLKEIIK------------QFSLFPIDGLIF 345 (407)
T ss_pred -cchHHHHHHHH------------HhccCCcceeEE
Confidence 47788876664 345666665444
No 216
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.62 E-value=0.025 Score=56.34 Aligned_cols=44 Identities=25% Similarity=0.369 Sum_probs=28.3
Q ss_pred CCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHH
Q 000756 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAE 565 (1300)
Q Consensus 511 ~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q 565 (1300)
+.+++++||+|+|||..+...+.. +... ...++++.+.......
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~-~~~~----------~~~~~~~~~~~~~~~~ 45 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARE-LGPP----------GGGVIYIDGEDILEEV 45 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhc-cCCC----------CCCEEEECCEEccccC
Confidence 357999999999999977544322 2111 1247888777654433
No 217
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=95.60 E-value=0.048 Score=69.20 Aligned_cols=122 Identities=21% Similarity=0.290 Sum_probs=81.4
Q ss_pred CCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhh
Q 000756 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (1300)
Q Consensus 493 ~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~ 572 (1300)
+..||.-|.+|+..++...+-.||.|=+|+|||+.....|--.+.. +++|+..+=|-..+..+.-.++.
T Consensus 667 ~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~-----------gkkVLLtsyThsAVDNILiKL~~ 735 (1100)
T KOG1805|consen 667 LLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVAL-----------GKKVLLTSYTHSAVDNILIKLKG 735 (1100)
T ss_pred HhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHc-----------CCeEEEEehhhHHHHHHHHHHhc
Confidence 4589999999999999998889999999999998765444332222 56899999998888777665544
Q ss_pred hcccCCcEEEEEeCCCccch--------------------hhhccceEEEECcchH-HHHHhhcCCCcccccccEEEEec
Q 000756 573 RLQMYDVKVRELSGDQTLTR--------------------QQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDE 631 (1300)
Q Consensus 573 ~l~~~gi~V~~ltGd~~~~~--------------------~~~~~~~IIV~TPekl-d~l~r~~~~~~~l~~v~liIiDE 631 (1300)
.++.+..+..+....+ ..+..+.|+.||-=-+ +.|. ..+.++++||||
T Consensus 736 ----~~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf-------~~R~FD~cIiDE 804 (1100)
T KOG1805|consen 736 ----FGIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF-------VNRQFDYCIIDE 804 (1100)
T ss_pred ----cCcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh-------hccccCEEEEcc
Confidence 3444333322222111 1235677888874322 1221 224589999999
Q ss_pred ccccc
Q 000756 632 IHLLH 636 (1300)
Q Consensus 632 aH~l~ 636 (1300)
|-.++
T Consensus 805 ASQI~ 809 (1100)
T KOG1805|consen 805 ASQIL 809 (1100)
T ss_pred ccccc
Confidence 98764
No 218
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.48 E-value=0.13 Score=57.11 Aligned_cols=34 Identities=12% Similarity=0.172 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHc---CCCeEEEEccCCCccHHHHHH
Q 000756 497 NRVQSRVYKSALS---SADNILLCAPTGAGKTNVAVL 530 (1300)
Q Consensus 497 n~iQ~~~i~~~l~---~~~nvLi~APTGsGKT~va~l 530 (1300)
+.....++..+.. ...+++++||+|+|||..+..
T Consensus 25 ~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~a 61 (227)
T PRK08903 25 NAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQA 61 (227)
T ss_pred cHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHH
Confidence 3444444544433 346799999999999987653
No 219
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.43 E-value=0.22 Score=58.87 Aligned_cols=129 Identities=15% Similarity=0.141 Sum_probs=64.5
Q ss_pred CeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEE-c-CcHHHHHHHHHHHhhhcccCCcEEEEEeCCCc
Q 000756 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYV-A-PMKALVAEVVGNLSNRLQMYDVKVRELSGDQT 589 (1300)
Q Consensus 512 ~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~i-a-P~kaLa~q~~~~~~~~l~~~gi~V~~ltGd~~ 589 (1300)
..++++||||+|||+.+........ .. +.++.++ + |.|.-+.++...+.+.+ |+.+.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~-~~----------GkkVglI~aDt~RiaAvEQLk~yae~l---gipv~------- 300 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFH-GK----------KKTVGFITTDHSRIGTVQQLQDYVKTI---GFEVI------- 300 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHH-Hc----------CCcEEEEecCCcchHHHHHHHHHhhhc---CCcEE-------
Confidence 5789999999999987655444332 21 2234333 3 44544555544443322 22221
Q ss_pred cchhhhccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEEccc
Q 000756 590 LTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (1300)
Q Consensus 590 ~~~~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LSAT 669 (1300)
.+.+|..+....+... ....+++||||-+=..+.. .. .+..+.+.+....+.-.++.+|||
T Consensus 301 -----------v~~d~~~L~~aL~~lk---~~~~~DvVLIDTaGRs~kd-~~----lm~EL~~~lk~~~PdevlLVLsAT 361 (436)
T PRK11889 301 -----------AVRDEAAMTRALTYFK---EEARVDYILIDTAGKNYRA-SE----TVEEMIETMGQVEPDYICLTLSAS 361 (436)
T ss_pred -----------ecCCHHHHHHHHHHHH---hccCCCEEEEeCccccCcC-HH----HHHHHHHHHhhcCCCeEEEEECCc
Confidence 1235554422222211 0114789999988654422 12 233333333333344445669998
Q ss_pred CCChHHHHHHHh
Q 000756 670 LPNYEDVALFLR 681 (1300)
Q Consensus 670 lpn~~dva~~L~ 681 (1300)
. ...++...+.
T Consensus 362 t-k~~d~~~i~~ 372 (436)
T PRK11889 362 M-KSKDMIEIIT 372 (436)
T ss_pred c-ChHHHHHHHH
Confidence 5 3455554443
No 220
>PRK14974 cell division protein FtsY; Provisional
Probab=95.41 E-value=0.16 Score=59.64 Aligned_cols=122 Identities=20% Similarity=0.264 Sum_probs=63.1
Q ss_pred CeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcC--cHHHHHHHHHHHhhhcccCCcEEEEEeCCCc
Q 000756 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP--MKALVAEVVGNLSNRLQMYDVKVRELSGDQT 589 (1300)
Q Consensus 512 ~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP--~kaLa~q~~~~~~~~l~~~gi~V~~ltGd~~ 589 (1300)
..++++||+|+|||+...-.+. .+... +.+++++.. .|+-+.++...+... +|+.+.. +...
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~-~l~~~----------g~~V~li~~Dt~R~~a~eqL~~~a~~---lgv~v~~--~~~g 204 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAY-YLKKN----------GFSVVIAAGDTFRAGAIEQLEEHAER---LGVKVIK--HKYG 204 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHH-HHHHc----------CCeEEEecCCcCcHHHHHHHHHHHHH---cCCceec--ccCC
Confidence 4588999999999986544332 33332 345666653 345555555544443 3444432 1111
Q ss_pred cchhhhccceEEEECcch--HHHHHhhcCCCcccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEEc
Q 000756 590 LTRQQIEETQIIVTTPEK--WDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (1300)
Q Consensus 590 ~~~~~~~~~~IIV~TPek--ld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LS 667 (1300)
. .|.. ++.+... .....++||||.++.++... . ++..+........+...++.++
T Consensus 205 ~-------------dp~~v~~~ai~~~-----~~~~~DvVLIDTaGr~~~~~-~----lm~eL~~i~~~~~pd~~iLVl~ 261 (336)
T PRK14974 205 A-------------DPAAVAYDAIEHA-----KARGIDVVLIDTAGRMHTDA-N----LMDELKKIVRVTKPDLVIFVGD 261 (336)
T ss_pred C-------------CHHHHHHHHHHHH-----HhCCCCEEEEECCCccCCcH-H----HHHHHHHHHHhhCCceEEEeec
Confidence 0 1111 1222211 11246899999999876321 1 1222222223345667788889
Q ss_pred ccCCC
Q 000756 668 ATLPN 672 (1300)
Q Consensus 668 ATlpn 672 (1300)
||..+
T Consensus 262 a~~g~ 266 (336)
T PRK14974 262 ALAGN 266 (336)
T ss_pred cccch
Confidence 98754
No 221
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.39 E-value=0.0046 Score=65.29 Aligned_cols=129 Identities=20% Similarity=0.278 Sum_probs=55.9
Q ss_pred EEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcccCCcEEEEEeCCCccchhh
Q 000756 515 LLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ 594 (1300)
Q Consensus 515 Li~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~~gi~V~~ltGd~~~~~~~ 594 (1300)
+|.|+-|-|||.+.-+++.+.+... ..+|++.+|..+-++.+++.+...+..++.+............-.
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~----------~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~~~~~~~~ 70 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKG----------KIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRIGQIIKLR 70 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS---------------EEEE-SS--S-HHHHHCC------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhc----------CceEEEecCCHHHHHHHHHHHHhhccccccccccccccccccccc
Confidence 5789999999988766654443322 347999999999998888777666655554431100000000001
Q ss_pred hccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEEcccCCChH
Q 000756 595 IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYE 674 (1300)
Q Consensus 595 ~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LSATlpn~~ 674 (1300)
.....|-+..|.. +... -...+++|||||=.+. -+.+. ++ -.....|.||.|+..|+
T Consensus 71 ~~~~~i~f~~Pd~---l~~~------~~~~DlliVDEAAaIp---~p~L~----~l-------l~~~~~vv~stTi~GYE 127 (177)
T PF05127_consen 71 FNKQRIEFVAPDE---LLAE------KPQADLLIVDEAAAIP---LPLLK----QL-------LRRFPRVVFSTTIHGYE 127 (177)
T ss_dssp --CCC--B--HHH---HCCT----------SCEEECTGGGS----HHHHH----HH-------HCCSSEEEEEEEBSSTT
T ss_pred cccceEEEECCHH---HHhC------cCCCCEEEEechhcCC---HHHHH----HH-------HhhCCEEEEEeeccccc
Confidence 1245566666663 2221 1234899999998764 12222 22 12334567788888776
Q ss_pred HH
Q 000756 675 DV 676 (1300)
Q Consensus 675 dv 676 (1300)
--
T Consensus 128 Gt 129 (177)
T PF05127_consen 128 GT 129 (177)
T ss_dssp BB
T ss_pred cC
Confidence 43
No 222
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=95.27 E-value=0.077 Score=54.31 Aligned_cols=87 Identities=21% Similarity=0.320 Sum_probs=57.9
Q ss_pred eEEecCCCCHHHHHHHHHHHhCCC-ccEEEeccccccccCCCCc---EEEEecceeccCCCC-----------------C
Q 000756 797 FAIHHAGMTRGDRQLVEDLFGDGH-VQVLVSTATLAWGVNLPAH---TVIIKGTQIYNPEKG-----------------A 855 (1300)
Q Consensus 797 v~~~Hagl~~~dR~~ve~~F~~g~-i~VLVaT~tla~GVdlPav---~vVI~~t~~yd~~~g-----------------~ 855 (1300)
..++.-+....+...+++.|+... ..||++|..++.|||+|+. .|||.| .+|-++.. .
T Consensus 24 ~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~g-lPfp~~~d~~~~~~~~~~~~~~~~~~ 102 (141)
T smart00492 24 LLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDG-LPFPYPDSPILKARLELLRDKGQIRP 102 (141)
T ss_pred CeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEe-cCCCCCCCHHHHHHHHHHHHhCCCCc
Confidence 345555666667788889998654 3799999889999999985 455555 34432221 1
Q ss_pred cc----cCCHHHHHHhhhccCCCCCCCceEEEEE
Q 000756 856 WT----ELSPLDIMQMLGRAGRPQYDSYGEGIII 885 (1300)
Q Consensus 856 ~~----~~S~~d~lQr~GRAGR~g~d~~G~~iil 885 (1300)
|. +.....+.|.+||+-|.. +..|..+++
T Consensus 103 ~~~~~~~~a~~~l~Qa~GR~iR~~-~D~g~i~l~ 135 (141)
T smart00492 103 FDFVSLPDAMRTLAQCVGRLIRGA-NDYGVVVIA 135 (141)
T ss_pred hhHHHHHHHHHHHHHHhCccccCc-CceEEEEEE
Confidence 11 122467889999999976 456765555
No 223
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.26 E-value=0.087 Score=54.44 Aligned_cols=39 Identities=36% Similarity=0.488 Sum_probs=26.6
Q ss_pred EEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHH
Q 000756 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALV 563 (1300)
Q Consensus 514 vLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa 563 (1300)
++|+||+|+|||..+...+...... +..++|+.....+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~-----------~~~v~~~~~e~~~~ 40 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATK-----------GGKVVYVDIEEEIE 40 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhc-----------CCEEEEEECCcchH
Confidence 6899999999999776554443321 34688877665543
No 224
>PRK04296 thymidine kinase; Provisional
Probab=95.24 E-value=0.036 Score=59.84 Aligned_cols=35 Identities=11% Similarity=0.161 Sum_probs=25.7
Q ss_pred eEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcC
Q 000756 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (1300)
Q Consensus 513 nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP 558 (1300)
-.+++||+|+|||+.++-.+.+.... +.+++|+-|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~-----------g~~v~i~k~ 38 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEER-----------GMKVLVFKP 38 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHc-----------CCeEEEEec
Confidence 46889999999999887666655433 346777766
No 225
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.17 E-value=0.22 Score=60.24 Aligned_cols=137 Identities=14% Similarity=0.205 Sum_probs=84.0
Q ss_pred eEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHH-HHHHHHHHHhhhcccCCcEEEEEeCCCccc
Q 000756 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA-LVAEVVGNLSNRLQMYDVKVRELSGDQTLT 591 (1300)
Q Consensus 513 nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~ka-La~q~~~~~~~~l~~~gi~V~~ltGd~~~~ 591 (1300)
-.+++|..|||||.++.+.++..+.... .+.+++|+.|+.. |...++..+...+..+|+....-.......
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~--------~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~~ 74 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINK--------KQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSME 74 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcC--------CCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCccE
Confidence 4688999999999999888887776630 2457999999866 778888888877776665422222222111
Q ss_pred hhhhc-cceEEEECc-chHHHHHhhcCCCcccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEEccc
Q 000756 592 RQQIE-ETQIIVTTP-EKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (1300)
Q Consensus 592 ~~~~~-~~~IIV~TP-ekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LSAT 669 (1300)
-.... +..|++..- +..+.+. ....+.++.+|||..+. ...++.++.|++ ... ..+.|.+|.|
T Consensus 75 i~~~~~g~~i~f~g~~d~~~~ik-------~~~~~~~~~idEa~~~~---~~~~~~l~~rlr----~~~-~~~~i~~t~N 139 (396)
T TIGR01547 75 IKILNTGKKFIFKGLNDKPNKLK-------SGAGIAIIWFEEASQLT---FEDIKELIPRLR----ETG-GKKFIIFSSN 139 (396)
T ss_pred EEecCCCeEEEeecccCChhHhh-------CcceeeeehhhhhhhcC---HHHHHHHHHHhh----ccC-CccEEEEEcC
Confidence 11112 455666554 3332222 12236899999999985 346777777642 112 2224677777
Q ss_pred CCC
Q 000756 670 LPN 672 (1300)
Q Consensus 670 lpn 672 (1300)
.+.
T Consensus 140 P~~ 142 (396)
T TIGR01547 140 PES 142 (396)
T ss_pred cCC
Confidence 443
No 226
>PRK08727 hypothetical protein; Validated
Probab=95.16 E-value=0.14 Score=57.11 Aligned_cols=35 Identities=26% Similarity=0.465 Sum_probs=23.4
Q ss_pred CeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEc
Q 000756 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA 557 (1300)
Q Consensus 512 ~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~ia 557 (1300)
..++++||+|+|||..+. ++.+.+... +.+++|+.
T Consensus 42 ~~l~l~G~~G~GKThL~~-a~~~~~~~~----------~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLAL-ALCAAAEQA----------GRSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHc----------CCcEEEEe
Confidence 359999999999997664 333444332 34677764
No 227
>CHL00181 cbbX CbbX; Provisional
Probab=95.15 E-value=0.18 Score=58.08 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=17.7
Q ss_pred CeEEEEccCCCccHHHHHHHH
Q 000756 512 DNILLCAPTGAGKTNVAVLTI 532 (1300)
Q Consensus 512 ~nvLi~APTGsGKT~va~l~i 532 (1300)
-++++.||+|+|||.+|-...
T Consensus 60 ~~ill~G~pGtGKT~lAr~la 80 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMA 80 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 469999999999999986553
No 228
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.15 E-value=0.11 Score=58.52 Aligned_cols=45 Identities=20% Similarity=0.268 Sum_probs=29.9
Q ss_pred ccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEEcccCC
Q 000756 620 YTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671 (1300)
Q Consensus 620 ~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LSATlp 671 (1300)
..+.++.||+||||.|..+-. +.+++.++......|+++...-+.
T Consensus 126 ~~~~fKiiIlDEcdsmtsdaq-------~aLrr~mE~~s~~trFiLIcnyls 170 (346)
T KOG0989|consen 126 PCPPFKIIILDECDSMTSDAQ-------AALRRTMEDFSRTTRFILICNYLS 170 (346)
T ss_pred CCCcceEEEEechhhhhHHHH-------HHHHHHHhccccceEEEEEcCChh
Confidence 445679999999999864321 223444556677888888765543
No 229
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.13 E-value=0.32 Score=53.82 Aligned_cols=123 Identities=19% Similarity=0.310 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHcCCC----eEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhh
Q 000756 497 NRVQSRVYKSALSSAD----NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (1300)
Q Consensus 497 n~iQ~~~i~~~l~~~~----nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~ 572 (1300)
|..=..+...+....+ .++|+||+|+|||-. +.++.+.+.... .+.+|+|+... ....+....+..
T Consensus 16 N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHL-L~Ai~~~~~~~~--------~~~~v~y~~~~-~f~~~~~~~~~~ 85 (219)
T PF00308_consen 16 NELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHL-LQAIANEAQKQH--------PGKRVVYLSAE-EFIREFADALRD 85 (219)
T ss_dssp THHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHH-HHHHHHHHHHHC--------TTS-EEEEEHH-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHH-HHHHHHHHHhcc--------ccccceeecHH-HHHHHHHHHHHc
Confidence 4444444444444322 489999999999984 556666665431 24578887543 444444433322
Q ss_pred hcccCCcEEEEEeCCCccchhhhccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccCChhHHHHHHHHHHH
Q 000756 573 RLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVR 652 (1300)
Q Consensus 573 ~l~~~gi~V~~ltGd~~~~~~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~ 652 (1300)
+.+..+.. .+...+++|||.+|.+... +..+..+-.+..
T Consensus 86 ---------------------------------~~~~~~~~------~~~~~DlL~iDDi~~l~~~--~~~q~~lf~l~n 124 (219)
T PF00308_consen 86 ---------------------------------GEIEEFKD------RLRSADLLIIDDIQFLAGK--QRTQEELFHLFN 124 (219)
T ss_dssp ---------------------------------TSHHHHHH------HHCTSSEEEEETGGGGTTH--HHHHHHHHHHHH
T ss_pred ---------------------------------ccchhhhh------hhhcCCEEEEecchhhcCc--hHHHHHHHHHHH
Confidence 11112222 2335789999999998753 222233333333
Q ss_pred HHhhccCCeeEEEEcccCCC
Q 000756 653 QIETTKEHIRLVGLSATLPN 672 (1300)
Q Consensus 653 ~~~~~~~~~riV~LSATlpn 672 (1300)
.+. ....++|+.|...|.
T Consensus 125 ~~~--~~~k~li~ts~~~P~ 142 (219)
T PF00308_consen 125 RLI--ESGKQLILTSDRPPS 142 (219)
T ss_dssp HHH--HTTSEEEEEESS-TT
T ss_pred HHH--hhCCeEEEEeCCCCc
Confidence 322 235577777767664
No 230
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.10 E-value=0.2 Score=59.81 Aligned_cols=26 Identities=31% Similarity=0.629 Sum_probs=19.3
Q ss_pred CCeEEEEccCCCccHHHHHHHHHHHHH
Q 000756 511 ADNILLCAPTGAGKTNVAVLTILQQLA 537 (1300)
Q Consensus 511 ~~nvLi~APTGsGKT~va~l~il~~l~ 537 (1300)
..+++|+||+|+|||.++.. +++.+.
T Consensus 40 ~~~i~I~G~~GtGKT~l~~~-~~~~l~ 65 (365)
T TIGR02928 40 PSNVFIYGKTGTGKTAVTKY-VMKELE 65 (365)
T ss_pred CCcEEEECCCCCCHHHHHHH-HHHHHH
Confidence 35799999999999987643 444443
No 231
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=95.10 E-value=0.041 Score=71.81 Aligned_cols=92 Identities=25% Similarity=0.251 Sum_probs=67.4
Q ss_pred CCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhh
Q 000756 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (1300)
Q Consensus 494 ~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~ 573 (1300)
..||+-|.+++.. ...+++|.|..|||||.+...-|.+.+.... ....+|++|+-|+..|.++.+++.+.
T Consensus 8 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~-------v~p~~IL~lTFT~kAA~Em~~Rl~~~ 77 (721)
T PRK11773 8 DSLNDKQREAVAA---PLGNMLVLAGAGSGKTRVLVHRIAWLMQVEN-------ASPYSIMAVTFTNKAAAEMRHRIEQL 77 (721)
T ss_pred HhcCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHcCC-------CChhHeEeeeccHHHHHHHHHHHHHH
Confidence 4699999998863 3467999999999999988777766664321 12457999999999999999999876
Q ss_pred cccCCcEEEEEeCCCccchhhhccceEEEECcchH-HHHHhh
Q 000756 574 LQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRK 614 (1300)
Q Consensus 574 l~~~gi~V~~ltGd~~~~~~~~~~~~IIV~TPekl-d~l~r~ 614 (1300)
++.. ...+.|+|...| ..++|.
T Consensus 78 ~~~~-------------------~~~~~i~TfHs~~~~iLr~ 100 (721)
T PRK11773 78 LGTS-------------------QGGMWVGTFHGLAHRLLRA 100 (721)
T ss_pred hccC-------------------CCCCEEEcHHHHHHHHHHH
Confidence 5310 124678898886 334443
No 232
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.04 E-value=0.031 Score=59.83 Aligned_cols=47 Identities=28% Similarity=0.301 Sum_probs=32.5
Q ss_pred EEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhh
Q 000756 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (1300)
Q Consensus 514 vLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~ 572 (1300)
++|.||+|+|||..++..+...+.. +.+++|+... .-..++.+++..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~-----------g~~v~~~s~e-~~~~~~~~~~~~ 48 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR-----------GEPGLYVTLE-ESPEELIENAES 48 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC-----------CCcEEEEECC-CCHHHHHHHHHH
Confidence 7899999999999887776666543 3368888653 345555555543
No 233
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.03 E-value=0.31 Score=59.28 Aligned_cols=129 Identities=17% Similarity=0.232 Sum_probs=65.6
Q ss_pred CCeEEEEccCCCccHHHHHHHHHHHH-HhccCCCCCCCCCCcEEEEE-c-CcHHHHHHHHHHHhhhcccCCcEEEEEeCC
Q 000756 511 ADNILLCAPTGAGKTNVAVLTILQQL-ALNRNDDGSFNHSNYKIVYV-A-PMKALVAEVVGNLSNRLQMYDVKVRELSGD 587 (1300)
Q Consensus 511 ~~nvLi~APTGsGKT~va~l~il~~l-~~~~~~~g~~~~~~~kiv~i-a-P~kaLa~q~~~~~~~~l~~~gi~V~~ltGd 587 (1300)
+..++++||||+|||+.+...+.... ... +.+|.+| + |.|.-+.++...|.+.+ |+.+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~----------g~~V~li~~D~~r~~a~eqL~~~a~~~---~vp~~----- 282 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYG----------KKKVALITLDTYRIGAVEQLKTYAKIM---GIPVE----- 282 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC----------CCeEEEEECCccHHHHHHHHHHHHHHh---CCceE-----
Confidence 45789999999999987654443332 221 2244443 2 44555556666665433 33221
Q ss_pred CccchhhhccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEEc
Q 000756 588 QTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (1300)
Q Consensus 588 ~~~~~~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LS 667 (1300)
.+.+|..+....+. +...++||||-+-....+ ...++. +..++.. ...+...++.+|
T Consensus 283 -------------~~~~~~~l~~~l~~------~~~~DlVlIDt~G~~~~d-~~~~~~-L~~ll~~--~~~~~~~~LVl~ 339 (424)
T PRK05703 283 -------------VVYDPKELAKALEQ------LRDCDVILIDTAGRSQRD-KRLIEE-LKALIEF--SGEPIDVYLVLS 339 (424)
T ss_pred -------------ccCCHHhHHHHHHH------hCCCCEEEEeCCCCCCCC-HHHHHH-HHHHHhc--cCCCCeEEEEEE
Confidence 12334433222222 224699999998664322 111111 1222220 112334577799
Q ss_pred ccCCChHHHHHHHh
Q 000756 668 ATLPNYEDVALFLR 681 (1300)
Q Consensus 668 ATlpn~~dva~~L~ 681 (1300)
||. ...++.....
T Consensus 340 a~~-~~~~l~~~~~ 352 (424)
T PRK05703 340 ATT-KYEDLKDIYK 352 (424)
T ss_pred CCC-CHHHHHHHHH
Confidence 995 5556655443
No 234
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.98 E-value=0.099 Score=64.19 Aligned_cols=42 Identities=21% Similarity=0.488 Sum_probs=27.8
Q ss_pred cccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEEc
Q 000756 619 TYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (1300)
Q Consensus 619 ~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LS 667 (1300)
.+....+++||||+|.|.. ..+ ..+++.++..++...+|+.+
T Consensus 112 P~~~~~KVvIIDEah~Ls~---~A~----NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 112 PISSKFKVYIIDEVHMLSN---SAF----NALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred cccCCceEEEEeChHhCCH---HHH----HHHHHHHhCCCCCeEEEEEe
Confidence 3456789999999999863 222 33455556666666666654
No 235
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=94.98 E-value=0.051 Score=70.42 Aligned_cols=86 Identities=20% Similarity=0.145 Sum_probs=65.7
Q ss_pred CCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhc
Q 000756 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1300)
Q Consensus 495 ~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l 574 (1300)
.||+-|.+++.. ...+++|.|..|||||.+...-|.+.+.... ....+|++|+.|+..|.++.+++.+.+
T Consensus 1 ~Ln~~Q~~av~~---~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~-------~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 1 KLNPQQQEAVEY---VTGPCLVLAGAGSGKTRVITNKIAYLIQNCG-------YKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC-------CCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 379999998864 3467999999999999998888877775421 124579999999999999999997765
Q ss_pred ccCCcEEEEEeCCCccchhhhccceEEEECcchH
Q 000756 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW 608 (1300)
Q Consensus 575 ~~~gi~V~~ltGd~~~~~~~~~~~~IIV~TPekl 608 (1300)
+.. ....+-|.|...|
T Consensus 71 ~~~------------------~~~~v~v~TfHs~ 86 (664)
T TIGR01074 71 GKG------------------EARGLTISTFHTL 86 (664)
T ss_pred Ccc------------------ccCCeEEEeHHHH
Confidence 310 1245789998886
No 236
>PRK08116 hypothetical protein; Validated
Probab=94.95 E-value=0.41 Score=54.67 Aligned_cols=81 Identities=22% Similarity=0.342 Sum_probs=46.8
Q ss_pred cccCCCCChhhHh-hcCCCCCCCHHHHHHHHHHH----------cCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCC
Q 000756 476 LIKISEMPEWAQP-AFKGMTQLNRVQSRVYKSAL----------SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDG 544 (1300)
Q Consensus 476 l~~i~~Lp~~~~~-~f~g~~~ln~iQ~~~i~~~l----------~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g 544 (1300)
+...+.+|+.+.. .|.+|. .++-|..++..+. ..+..++++||+|+|||..+. +|.+.+...
T Consensus 69 l~~~s~i~~~~~~~tFdnf~-~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~-aia~~l~~~----- 141 (268)
T PRK08116 69 LKSNSLLDEKFRNSTFENFL-FDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAA-CIANELIEK----- 141 (268)
T ss_pred HHHhcCCCHHHHhcchhccc-CChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHH-HHHHHHHHc-----
Confidence 3344455554443 355565 4666766665443 112239999999999999875 566666543
Q ss_pred CCCCCCcEEEEEcCcHHHHHHHHHH
Q 000756 545 SFNHSNYKIVYVAPMKALVAEVVGN 569 (1300)
Q Consensus 545 ~~~~~~~kiv~iaP~kaLa~q~~~~ 569 (1300)
+..++|+ +...|..++...
T Consensus 142 -----~~~v~~~-~~~~ll~~i~~~ 160 (268)
T PRK08116 142 -----GVPVIFV-NFPQLLNRIKST 160 (268)
T ss_pred -----CCeEEEE-EHHHHHHHHHHH
Confidence 2345555 444555544433
No 237
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.88 E-value=0.16 Score=62.82 Aligned_cols=21 Identities=33% Similarity=0.403 Sum_probs=17.6
Q ss_pred CeEEEEccCCCccHHHHHHHH
Q 000756 512 DNILLCAPTGAGKTNVAVLTI 532 (1300)
Q Consensus 512 ~nvLi~APTGsGKT~va~l~i 532 (1300)
..+|++||.|+|||++|.+.+
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilA 64 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIA 64 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 369999999999999886543
No 238
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=94.86 E-value=0.11 Score=59.73 Aligned_cols=62 Identities=21% Similarity=0.307 Sum_probs=47.6
Q ss_pred cCCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHH
Q 000756 490 FKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALV 563 (1300)
Q Consensus 490 f~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa 563 (1300)
|-.|..+++-|...+..+.....|+|+||.||||||+. ++.+...... .. ++|++--+.+|-
T Consensus 152 li~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl-----LNal~~~i~~------~e-RvItiEDtaELq 213 (355)
T COG4962 152 LIIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL-----LNALSGFIDS------DE-RVITIEDTAELQ 213 (355)
T ss_pred HHHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH-----HHHHHhcCCC------cc-cEEEEeehhhhc
Confidence 34588999999999999999988999999999999974 3444433221 22 899888887763
No 239
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.86 E-value=0.13 Score=56.84 Aligned_cols=23 Identities=17% Similarity=0.315 Sum_probs=18.8
Q ss_pred CCCeEEEEccCCCccHHHHHHHH
Q 000756 510 SADNILLCAPTGAGKTNVAVLTI 532 (1300)
Q Consensus 510 ~~~nvLi~APTGsGKT~va~l~i 532 (1300)
...+++++||+|+|||..+....
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~ 59 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAAC 59 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999875544
No 240
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.77 E-value=0.094 Score=65.70 Aligned_cols=32 Identities=34% Similarity=0.472 Sum_probs=22.1
Q ss_pred HHHHHHHHcCC---CeEEEEccCCCccHHHHHHHH
Q 000756 501 SRVYKSALSSA---DNILLCAPTGAGKTNVAVLTI 532 (1300)
Q Consensus 501 ~~~i~~~l~~~---~nvLi~APTGsGKT~va~l~i 532 (1300)
.+.+..++.++ ..+|++||.|+|||.+|...+
T Consensus 24 v~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLA 58 (702)
T PRK14960 24 SRALSSALERGRLHHAYLFTGTRGVGKTTIARILA 58 (702)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 34445555544 356999999999999885543
No 241
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.76 E-value=0.13 Score=62.67 Aligned_cols=29 Identities=31% Similarity=0.537 Sum_probs=20.6
Q ss_pred HHHHHcCCC---eEEEEccCCCccHHHHHHHH
Q 000756 504 YKSALSSAD---NILLCAPTGAGKTNVAVLTI 532 (1300)
Q Consensus 504 i~~~l~~~~---nvLi~APTGsGKT~va~l~i 532 (1300)
+..++..++ .+|++||.|+|||++|...+
T Consensus 30 L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLA 61 (484)
T PRK14956 30 LQNALKSGKIGHAYIFFGPRGVGKTTIARILA 61 (484)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 444454443 37999999999999886543
No 242
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=94.75 E-value=0.067 Score=69.82 Aligned_cols=110 Identities=23% Similarity=0.216 Sum_probs=74.3
Q ss_pred CCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhh
Q 000756 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (1300)
Q Consensus 494 ~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~ 573 (1300)
..||+-|.+++.. ...+++|.|..|||||.+...-|.+.+.... ....+|++|+.|+..|.++.+++.+.
T Consensus 3 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~-------v~p~~IL~lTFTnkAA~em~~Rl~~~ 72 (715)
T TIGR01075 3 DGLNDKQREAVAA---PPGNLLVLAGAGSGKTRVLTHRIAWLLSVEN-------ASPHSIMAVTFTNKAAAEMRHRIGAL 72 (715)
T ss_pred cccCHHHHHHHcC---CCCCEEEEecCCCCHHHHHHHHHHHHHHcCC-------CCHHHeEeeeccHHHHHHHHHHHHHH
Confidence 4689999998863 3467999999999999998777766665321 12457999999999999999999876
Q ss_pred cccCCcEEEEEeCCCccchhhhccceEEEECcchH-HHHHhhcC-CCcccccccEEEEecccc
Q 000756 574 LQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRKSG-DRTYTQLVKLLIIDEIHL 634 (1300)
Q Consensus 574 l~~~gi~V~~ltGd~~~~~~~~~~~~IIV~TPekl-d~l~r~~~-~~~~l~~v~liIiDEaH~ 634 (1300)
+.. + ...+.|+|...| ..++|... ...+-. .+-|+|+.+.
T Consensus 73 ~~~----------~---------~~~~~i~TfHs~~~~iLr~~~~~~g~~~--~f~i~d~~d~ 114 (715)
T TIGR01075 73 LGT----------S---------ARGMWIGTFHGLAHRLLRAHHLDAGLPQ--DFQILDSDDQ 114 (715)
T ss_pred hcc----------c---------ccCcEEEcHHHHHHHHHHHHHHHhCCCC--CCeecCHHHH
Confidence 431 0 124678998886 33444321 111111 2456776543
No 243
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.71 E-value=0.067 Score=62.28 Aligned_cols=60 Identities=23% Similarity=0.399 Sum_probs=44.8
Q ss_pred CCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHH
Q 000756 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (1300)
Q Consensus 494 ~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaL 562 (1300)
..+++.|.+.+..++....|+|||||||||||+.. -+++..+.... ..-+++.+-...+|
T Consensus 127 g~~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i~~~~--------~~~rivtiEd~~El 186 (323)
T PRK13833 127 KIMTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEIVASA--------PEDRLVILEDTAEI 186 (323)
T ss_pred CCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHHhcCC--------CCceEEEecCCccc
Confidence 35788999999999999999999999999999865 44555553211 13478887777675
No 244
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=94.65 E-value=0.14 Score=64.77 Aligned_cols=41 Identities=24% Similarity=0.475 Sum_probs=27.2
Q ss_pred ccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEEc
Q 000756 620 YTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (1300)
Q Consensus 620 ~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LS 667 (1300)
.....+++||||+|.|... . ...+++.++..+..+++|+.+
T Consensus 116 ~~gk~KVIIIDEad~Ls~~---A----~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 116 TAGKYKVYIIDEVHMLSKS---A----FNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hhCCcEEEEEECccccCHH---H----HHHHHHHHHhCCCCcEEEEEe
Confidence 3456799999999987631 1 233455556666677777765
No 245
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.61 E-value=1.6 Score=62.64 Aligned_cols=218 Identities=12% Similarity=0.163 Sum_probs=111.7
Q ss_pred CCCHHHHHHHHHHHcC-CCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhh
Q 000756 495 QLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (1300)
Q Consensus 495 ~ln~iQ~~~i~~~l~~-~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~ 573 (1300)
.|++-|.+++..++.+ +.-.+|.|+.|+|||.+. -+++..+... +.+|+.++|+-.-+..+.+.....
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l-~~l~~~~~~~----------G~~V~~lAPTgrAA~~L~e~~g~~ 497 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIA-QLLLHLASEQ----------GYEIQIITAGSLSAQELRQKIPRL 497 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHH-HHHHHHHHhc----------CCeEEEEeCCHHHHHHHHHHhcch
Confidence 6899999999998876 467889999999999864 3344444332 468999999988776665443111
Q ss_pred cccCCcEEEEEeCCCccchhhhccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccCChhHHHHHHHHHHHH
Q 000756 574 LQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQ 653 (1300)
Q Consensus 574 l~~~gi~V~~ltGd~~~~~~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~ 653 (1300)
.. .+..+. .. .... .-..|...| ..+. ..+..-++|||||+-++.. ..+..++..
T Consensus 498 A~----Ti~~~l------~~-l~~~-~~~~tv~~f---l~~~---~~l~~~~vlIVDEAsMl~~---~~~~~Ll~~---- 552 (1960)
T TIGR02760 498 AS----TFITWV------KN-LFND-DQDHTVQGL---LDKS---SPFSNKDIFVVDEANKLSN---NELLKLIDK---- 552 (1960)
T ss_pred hh----hHHHHH------Hh-hccc-ccchhHHHh---hccc---CCCCCCCEEEEECCCCCCH---HHHHHHHHH----
Confidence 00 000000 00 0000 011111111 1111 2234568999999998862 223333322
Q ss_pred HhhccCCeeEEEEccc--CCC--hHHHHHHHhccccCceEEecCCccc-ccceeeEeeeecCchhHHHHHHHHHHHHHHH
Q 000756 654 IETTKEHIRLVGLSAT--LPN--YEDVALFLRVNLEKGLFYFDNSYRP-VPLSQQYIGIQVKKPLQRFQLMNDLCYEKVV 728 (1300)
Q Consensus 654 ~~~~~~~~riV~LSAT--lpn--~~dva~~L~~~~~~~~~~f~~~~rp-v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 728 (1300)
. .....|+|++.=+ +|. +-.+-..|... ....+.+....|. .++ .+.......++..+... ..
T Consensus 553 a--~~~garvVlvGD~~QL~sV~aG~~f~~L~~~-gv~t~~l~~i~rq~~~v-----~i~~~~~~~r~~~ia~~----y~ 620 (1960)
T TIGR02760 553 A--EQHNSKLILLNDSAQRQGMSAGSAIDLLKEG-GVTTYAWVDTKQQKASV-----EISEAVDKLRVDYIASA----WL 620 (1960)
T ss_pred H--hhcCCEEEEEcChhhcCccccchHHHHHHHC-CCcEEEeecccccCcce-----eeeccCchHHHHHHHHH----HH
Confidence 2 2356777776533 332 11122222221 1122233222111 111 11122222333333322 22
Q ss_pred HHh-CCCeEEEEEcChHHHHHHHHHHHHHhhcc
Q 000756 729 AVA-GKHQVLIFVHSRKETAKTARAIRDTALEN 760 (1300)
Q Consensus 729 ~~~-~~~~vLVFv~sr~~~~~~a~~L~~~~~~~ 760 (1300)
... .+..++|+.++.++...+...++......
T Consensus 621 ~L~~~r~~tliv~~t~~dr~~Ln~~iR~~L~~~ 653 (1960)
T TIGR02760 621 DLTPDRQNSQVLATTHREQQDLTQIIRNALKQE 653 (1960)
T ss_pred hcccccCceEEEcCCcHHHHHHHHHHHHHHHHc
Confidence 222 34569999999999988888888766443
No 246
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.55 E-value=0.19 Score=57.45 Aligned_cols=54 Identities=22% Similarity=0.236 Sum_probs=34.4
Q ss_pred HcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhh
Q 000756 508 LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (1300)
Q Consensus 508 l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~ 572 (1300)
+..+..++|+||||+|||..+...+.+....+ +.+++|+.-- .-..++..++..
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~----------g~~vl~iS~E-~~~~~~~~r~~~ 80 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQH----------GVRVGTISLE-EPVVRTARRLLG 80 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhc----------CceEEEEEcc-cCHHHHHHHHHH
Confidence 34467899999999999997776665554431 3468887642 223444444433
No 247
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.54 E-value=0.093 Score=60.82 Aligned_cols=60 Identities=28% Similarity=0.438 Sum_probs=45.1
Q ss_pred CCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHH
Q 000756 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (1300)
Q Consensus 494 ~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaL 562 (1300)
..+++-|.+.+..++..+.|++|+||||||||+.. -+++..+.... ...+++++-...++
T Consensus 115 g~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~~i~~~~--------~~~ri~tiEd~~El 174 (299)
T TIGR02782 115 GIMTAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLAEIAKND--------PTDRVVIIEDTREL 174 (299)
T ss_pred CCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHhhccC--------CCceEEEECCchhh
Confidence 35678888889988888899999999999999865 44555554310 13478888888776
No 248
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.50 E-value=0.16 Score=64.53 Aligned_cols=40 Identities=20% Similarity=0.487 Sum_probs=26.8
Q ss_pred ccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEEcc
Q 000756 622 QLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSA 668 (1300)
Q Consensus 622 ~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LSA 668 (1300)
...+++||||+|.|... . ...+++.++..+..+++|+.+-
T Consensus 118 gr~KVIIIDEah~LT~~---A----~NALLKtLEEPP~~v~FILaTt 157 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNH---A----FNAMLKTLEEPPPHVKFILATT 157 (830)
T ss_pred CCceEEEEeChhhCCHH---H----HHHHHHHHHhcCCCeEEEEEEC
Confidence 45799999999998642 1 2234555666666777777653
No 249
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.48 E-value=0.46 Score=58.38 Aligned_cols=129 Identities=19% Similarity=0.227 Sum_probs=64.0
Q ss_pred CCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEc--CcHHHHHHHHHHHhhhcccCCcEEEEEeCC
Q 000756 510 SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA--PMKALVAEVVGNLSNRLQMYDVKVRELSGD 587 (1300)
Q Consensus 510 ~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~ia--P~kaLa~q~~~~~~~~l~~~gi~V~~ltGd 587 (1300)
.++.+.++||||+|||+.+...+......+. +.++.++. +.+..+.++...+.. .+|+.+..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~---------gkkVaLIdtDtyRigA~EQLk~ya~---iLgv~v~~---- 412 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHA---------PRDVALVTTDTQRVGGREQLHSYGR---QLGIAVHE---- 412 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcC---------CCceEEEecccccccHHHHHHHhhc---ccCceeEe----
Confidence 4578999999999999877544433333220 12344332 345545544443322 22332221
Q ss_pred CccchhhhccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEEc
Q 000756 588 QTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (1300)
Q Consensus 588 ~~~~~~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LS 667 (1300)
+.+++.+..+.++. ...++||||.+-....+ ..+...+..+ ........++.++
T Consensus 413 --------------a~d~~~L~~aL~~l------~~~DLVLIDTaG~s~~D--~~l~eeL~~L----~aa~~~a~lLVLp 466 (559)
T PRK12727 413 --------------ADSAESLLDLLERL------RDYKLVLIDTAGMGQRD--RALAAQLNWL----RAARQVTSLLVLP 466 (559)
T ss_pred --------------cCcHHHHHHHHHHh------ccCCEEEecCCCcchhh--HHHHHHHHHH----HHhhcCCcEEEEE
Confidence 11233343333332 34789999999764321 1111111111 1122345678888
Q ss_pred ccCCChHHHHHHHh
Q 000756 668 ATLPNYEDVALFLR 681 (1300)
Q Consensus 668 ATlpn~~dva~~L~ 681 (1300)
++. ...++...+.
T Consensus 467 Ats-s~~Dl~eii~ 479 (559)
T PRK12727 467 ANA-HFSDLDEVVR 479 (559)
T ss_pred CCC-ChhHHHHHHH
Confidence 884 4555555443
No 250
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.35 E-value=0.14 Score=51.05 Aligned_cols=46 Identities=13% Similarity=0.286 Sum_probs=27.2
Q ss_pred ccEEEEecccccccCC----hhHHHHHHHHHHHHHhhccC---CeeEEEEccc
Q 000756 624 VKLLIIDEIHLLHDNR----GPVLESIVARTVRQIETTKE---HIRLVGLSAT 669 (1300)
Q Consensus 624 v~liIiDEaH~l~d~r----g~~le~iv~rl~~~~~~~~~---~~riV~LSAT 669 (1300)
-.+|+|||+|.+.... ...-..++..+...+..... ++.+|+.|.+
T Consensus 59 ~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp SEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred ceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 4799999999986532 33334444444444444333 4666666655
No 251
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=94.35 E-value=0.53 Score=58.75 Aligned_cols=136 Identities=18% Similarity=0.302 Sum_probs=83.3
Q ss_pred HHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcccC--CcEEEEE
Q 000756 507 ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMY--DVKVREL 584 (1300)
Q Consensus 507 ~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~~--gi~V~~l 584 (1300)
.++. +-.+++.|==.|||.+.. +++..+... ..+.+|+|++|.+..++.+++++..++... +-.+...
T Consensus 251 ~fkq-k~tVflVPRR~GKTwivv-~iI~~ll~s--------~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~v 320 (738)
T PHA03368 251 HFRQ-RATVFLVPRRHGKTWFLV-PLIALALAT--------FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHV 320 (738)
T ss_pred Hhhc-cceEEEecccCCchhhHH-HHHHHHHHh--------CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeee
Confidence 3444 347788899999999776 444433321 125689999999999999999998877632 2223333
Q ss_pred eCCCccchhhhcc--ceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCee
Q 000756 585 SGDQTLTRQQIEE--TQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIR 662 (1300)
Q Consensus 585 tGd~~~~~~~~~~--~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~r 662 (1300)
.|+ ...-....+ +.|.+++- +... ...=+.++++|||||+.+.+ ..+..++--+ ...+.+
T Consensus 321 kGe-~I~i~f~nG~kstI~FaSa-------rntN-siRGqtfDLLIVDEAqFIk~---~al~~ilp~l------~~~n~k 382 (738)
T PHA03368 321 KGE-TISFSFPDGSRSTIVFASS-------HNTN-GIRGQDFNLLFVDEANFIRP---DAVQTIMGFL------NQTNCK 382 (738)
T ss_pred cCc-EEEEEecCCCccEEEEEec-------cCCC-CccCCcccEEEEechhhCCH---HHHHHHHHHH------hccCcc
Confidence 442 221111111 24555431 1111 01223689999999999874 4566655322 345889
Q ss_pred EEEEcccC
Q 000756 663 LVGLSATL 670 (1300)
Q Consensus 663 iV~LSATl 670 (1300)
+|.+|-|-
T Consensus 383 ~I~ISS~N 390 (738)
T PHA03368 383 IIFVSSTN 390 (738)
T ss_pred EEEEecCC
Confidence 99999883
No 252
>PHA02533 17 large terminase protein; Provisional
Probab=94.31 E-value=0.53 Score=58.87 Aligned_cols=149 Identities=15% Similarity=0.147 Sum_probs=82.4
Q ss_pred CCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhc
Q 000756 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1300)
Q Consensus 495 ~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l 574 (1300)
.|+|+|...+..+.....+ +++.|=..|||.++...++...... .+..+++++|++.-|..+++.++...
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~-ii~~aRq~GKStl~a~~al~~a~~~---------~~~~v~i~A~~~~QA~~vF~~ik~~i 128 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFN-ACNLSRQLGKTTVVAIFLLHYVCFN---------KDKNVGILAHKASMAAEVLDRTKQAI 128 (534)
T ss_pred CCcHHHHHHHHHHhcCeEE-EEEEcCcCChHHHHHHHHHHHHHhC---------CCCEEEEEeCCHHHHHHHHHHHHHHH
Confidence 5889999999876544444 5667889999998775444433322 13489999999999999998887655
Q ss_pred ccCC--cEEEEEeCCCccchhhhccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccCChhHHHHHHHHHHH
Q 000756 575 QMYD--VKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVR 652 (1300)
Q Consensus 575 ~~~g--i~V~~ltGd~~~~~~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~ 652 (1300)
.... .... +.......-....++.|.+.|-.. +.. +. ....++|+||+|.+.+. ...+..+..
T Consensus 129 e~~P~l~~~~-i~~~~~~~I~l~NGS~I~~lss~~-----~t~--rG--~~~~~liiDE~a~~~~~-~e~~~ai~p---- 193 (534)
T PHA02533 129 ELLPDFLQPG-IVEWNKGSIELENGSKIGAYASSP-----DAV--RG--NSFAMIYIDECAFIPNF-IDFWLAIQP---- 193 (534)
T ss_pred HhCHHHhhcc-eeecCccEEEeCCCCEEEEEeCCC-----Ccc--CC--CCCceEEEeccccCCCH-HHHHHHHHH----
Confidence 4321 1111 111110000001345554544321 011 11 13578999999986532 223332222
Q ss_pred HHhhccCCeeEEEEccc
Q 000756 653 QIETTKEHIRLVGLSAT 669 (1300)
Q Consensus 653 ~~~~~~~~~riV~LSAT 669 (1300)
.+.. ....|++..|++
T Consensus 194 ~las-g~~~r~iiiSTp 209 (534)
T PHA02533 194 VISS-GRSSKIIITSTP 209 (534)
T ss_pred HHHc-CCCceEEEEECC
Confidence 1222 233567777766
No 253
>PRK05973 replicative DNA helicase; Provisional
Probab=94.28 E-value=0.6 Score=52.06 Aligned_cols=129 Identities=19% Similarity=0.164 Sum_probs=66.8
Q ss_pred cCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcccCCcEEEEEeCCC
Q 000756 509 SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQ 588 (1300)
Q Consensus 509 ~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~~gi~V~~ltGd~ 588 (1300)
..+.-++|.|++|+|||+.++..+.+.... +.+++|++---. ..|+.+++... |+...
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~-----------Ge~vlyfSlEes-~~~i~~R~~s~----g~d~~------ 119 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKS-----------GRTGVFFTLEYT-EQDVRDRLRAL----GADRA------ 119 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhc-----------CCeEEEEEEeCC-HHHHHHHHHHc----CCChH------
Confidence 345678999999999999888777666543 236777754322 45666665443 22111
Q ss_pred ccchhhhccceEEEEC-cchHHHHHhhcCCCcccccccEEEEecccccccC-ChhHHHHHHHHHHHHHhhccCCeeEEEE
Q 000756 589 TLTRQQIEETQIIVTT-PEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDN-RGPVLESIVARTVRQIETTKEHIRLVGL 666 (1300)
Q Consensus 589 ~~~~~~~~~~~IIV~T-Pekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~-rg~~le~iv~rl~~~~~~~~~~~riV~L 666 (1300)
.....-++... +...+.+.++... -...++||||=+..+... +.+.+..++..+..... ..++-+|++
T Consensus 120 -----~~~~~~~~d~~d~~~~~~ii~~l~~---~~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak--~~gitvIl~ 189 (237)
T PRK05973 120 -----QFADLFEFDTSDAICADYIIARLAS---APRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFAR--ERGLIIVFI 189 (237)
T ss_pred -----HhccceEeecCCCCCHHHHHHHHHH---hhCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHHH--hCCCeEEEE
Confidence 00011111111 1112222222211 123589999999987432 33344444433333222 346666666
Q ss_pred ccc
Q 000756 667 SAT 669 (1300)
Q Consensus 667 SAT 669 (1300)
|-.
T Consensus 190 sQl 192 (237)
T PRK05973 190 SQI 192 (237)
T ss_pred ecC
Confidence 644
No 254
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.26 E-value=0.38 Score=58.17 Aligned_cols=26 Identities=31% Similarity=0.557 Sum_probs=19.2
Q ss_pred CCeEEEEccCCCccHHHHHHHHHHHHH
Q 000756 511 ADNILLCAPTGAGKTNVAVLTILQQLA 537 (1300)
Q Consensus 511 ~~nvLi~APTGsGKT~va~l~il~~l~ 537 (1300)
..+++|+||+|+|||.++-.. ++.+.
T Consensus 55 ~~~~lI~G~~GtGKT~l~~~v-~~~l~ 80 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVKKV-FEELE 80 (394)
T ss_pred CCeEEEECCCCCCHHHHHHHH-HHHHH
Confidence 367999999999999976443 34443
No 255
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.21 E-value=0.093 Score=61.25 Aligned_cols=60 Identities=18% Similarity=0.345 Sum_probs=43.9
Q ss_pred CCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHH
Q 000756 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (1300)
Q Consensus 494 ~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaL 562 (1300)
..+++.|.+.+..++..+.|++|+||||||||+.+ -+++..+... ....++++|-.+.+|
T Consensus 131 g~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~aL~~~~~~~--------~~~~rivtIEd~~El 190 (319)
T PRK13894 131 GIMTAAQREAIIAAVRAHRNILVIGGTGSGKTTLV-NAIINEMVIQ--------DPTERVFIIEDTGEI 190 (319)
T ss_pred CCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHhhhhc--------CCCceEEEEcCCCcc
Confidence 35778899999999889999999999999999654 4455443211 013478888777765
No 256
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.21 E-value=0.31 Score=61.88 Aligned_cols=40 Identities=23% Similarity=0.462 Sum_probs=27.2
Q ss_pred cccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEEc
Q 000756 621 TQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (1300)
Q Consensus 621 l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LS 667 (1300)
....+++||||+|.|.. ... ..+++.++..+..+++|+.+
T Consensus 117 ~g~~KV~IIDEah~Ls~---~a~----NALLKtLEEPp~~v~FIL~T 156 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSR---HSF----NALLKTLEEPPEHVKFLLAT 156 (647)
T ss_pred cCCCEEEEEechHhCCH---HHH----HHHHHHHHcCCCCeEEEEec
Confidence 35678999999999863 222 33455567766777777763
No 257
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=94.19 E-value=0.093 Score=66.00 Aligned_cols=163 Identities=12% Similarity=0.191 Sum_probs=96.7
Q ss_pred CCCCHHHHHHHHHHHcCC-CeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHH-HHHh
Q 000756 494 TQLNRVQSRVYKSALSSA-DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV-GNLS 571 (1300)
Q Consensus 494 ~~ln~iQ~~~i~~~l~~~-~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~-~~~~ 571 (1300)
...+|+|.+.++++-... +.|.++.++-+|||.+.+..+...+.. ....++|+.||..+|.... .+|.
T Consensus 15 ~~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~----------~P~~~l~v~Pt~~~a~~~~~~rl~ 84 (557)
T PF05876_consen 15 TDRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQ----------DPGPMLYVQPTDDAAKDFSKERLD 84 (557)
T ss_pred CCCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEe----------CCCCEEEEEEcHHHHHHHHHHHHH
Confidence 367899999998764332 478999999999999766655444433 2446999999999998876 3454
Q ss_pred hhcccCC-cE--EEE---EeCCCccchhhhccceEEEECcchHHHHHhhcCCCcccccccEEEEeccccccc---CChhH
Q 000756 572 NRLQMYD-VK--VRE---LSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD---NRGPV 642 (1300)
Q Consensus 572 ~~l~~~g-i~--V~~---ltGd~~~~~~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d---~rg~~ 642 (1300)
..+.... ++ +.. -.++.+.....+.+..+.++.... ........++++++||++..-. ..|..
T Consensus 85 Pmi~~sp~l~~~~~~~~~~~~~~t~~~k~f~gg~l~~~ga~S--------~~~l~s~~~r~~~~DEvD~~p~~~~~eGdp 156 (557)
T PF05876_consen 85 PMIRASPVLRRKLSPSKSRDSGNTILYKRFPGGFLYLVGANS--------PSNLRSRPARYLLLDEVDRYPDDVGGEGDP 156 (557)
T ss_pred HHHHhCHHHHHHhCchhhcccCCchhheecCCCEEEEEeCCC--------CcccccCCcCEEEEechhhccccCccCCCH
Confidence 4443221 11 111 112333333344455555544321 1111223478999999999843 46788
Q ss_pred HHHHHHHHHHHHhhccCCeeEEEE-cccCCChHHHHH
Q 000756 643 LESIVARTVRQIETTKEHIRLVGL-SATLPNYEDVAL 678 (1300)
Q Consensus 643 le~iv~rl~~~~~~~~~~~riV~L-SATlpn~~dva~ 678 (1300)
++.+..|+. ......+++.. |.|+.....+..
T Consensus 157 ~~la~~R~~----tf~~~~K~~~~STPt~~~~~~I~~ 189 (557)
T PF05876_consen 157 VELAEKRTK----TFGSNRKILRISTPTIEGTSRIER 189 (557)
T ss_pred HHHHHHHHh----hhccCcEEEEeCCCCCCCCCHHHH
Confidence 888777763 22234444444 445543334433
No 258
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.17 E-value=0.2 Score=62.41 Aligned_cols=39 Identities=21% Similarity=0.461 Sum_probs=26.6
Q ss_pred ccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEEc
Q 000756 622 QLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (1300)
Q Consensus 622 ~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LS 667 (1300)
...+++||||||.|.. ... ..+++.++..+..+++|+.+
T Consensus 118 ~~~kV~iIDE~~~ls~---~a~----naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSG---HSF----NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCH---HHH----HHHHHHHhccCCCeEEEEEE
Confidence 4679999999999873 222 33445556666777777754
No 259
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.13 E-value=0.25 Score=60.58 Aligned_cols=48 Identities=21% Similarity=0.350 Sum_probs=32.4
Q ss_pred eEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHH
Q 000756 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1300)
Q Consensus 513 nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~ 570 (1300)
.++++||+|+|||..+ .++.+.+.... .+.+++|+.+ ..+..++...+
T Consensus 143 pl~i~G~~G~GKTHLl-~Ai~~~l~~~~--------~~~~v~yv~~-~~f~~~~~~~l 190 (450)
T PRK14087 143 PLFIYGESGMGKTHLL-KAAKNYIESNF--------SDLKVSYMSG-DEFARKAVDIL 190 (450)
T ss_pred ceEEECCCCCcHHHHH-HHHHHHHHHhC--------CCCeEEEEEH-HHHHHHHHHHH
Confidence 4899999999999765 56666665421 2457888766 45666655554
No 260
>PRK06893 DNA replication initiation factor; Validated
Probab=94.11 E-value=0.22 Score=55.49 Aligned_cols=25 Identities=8% Similarity=0.154 Sum_probs=17.9
Q ss_pred CeEEEEccCCCccHHHHHHHHHHHHH
Q 000756 512 DNILLCAPTGAGKTNVAVLTILQQLA 537 (1300)
Q Consensus 512 ~nvLi~APTGsGKT~va~l~il~~l~ 537 (1300)
..++++||+|+|||..+.. +.+.+.
T Consensus 40 ~~l~l~G~~G~GKThL~~a-i~~~~~ 64 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKA-VSNHYL 64 (229)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHH
Confidence 3479999999999986643 344443
No 261
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=94.05 E-value=0.65 Score=54.22 Aligned_cols=39 Identities=28% Similarity=0.600 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHHHc---CCC---eEEEEccCCCccHHHHHHHH
Q 000756 494 TQLNRVQSRVYKSALS---SAD---NILLCAPTGAGKTNVAVLTI 532 (1300)
Q Consensus 494 ~~ln~iQ~~~i~~~l~---~~~---nvLi~APTGsGKT~va~l~i 532 (1300)
..++|+|..++..+.. .++ -+|++||.|.||+..+...+
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA 47 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALA 47 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHH
Confidence 4678888888877543 222 48999999999998775543
No 262
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.01 E-value=0.32 Score=61.06 Aligned_cols=41 Identities=22% Similarity=0.523 Sum_probs=28.0
Q ss_pred cccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEEcc
Q 000756 621 TQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSA 668 (1300)
Q Consensus 621 l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LSA 668 (1300)
....+++||||+|.|... .. ..+++.++..+.++++|+.|-
T Consensus 122 ~gr~KViIIDEah~Ls~~---Aa----NALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNH---AF----NAMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred cCCceEEEEEChHhcCHH---HH----HHHHHhhccCCCCceEEEEeC
Confidence 456789999999998632 22 335555666667777777654
No 263
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.97 E-value=0.16 Score=65.66 Aligned_cols=38 Identities=24% Similarity=0.488 Sum_probs=26.7
Q ss_pred ccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEE
Q 000756 622 QLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGL 666 (1300)
Q Consensus 622 ~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~L 666 (1300)
...+++||||||.|.. ... ..+++.++..+..+++|+.
T Consensus 118 gk~KViIIDEAh~LT~---eAq----NALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLSR---SSF----NALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcCH---HHH----HHHHHHHhccCCCeEEEEE
Confidence 4578999999999862 222 3345556776777888876
No 264
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.93 E-value=0.53 Score=55.62 Aligned_cols=131 Identities=20% Similarity=0.242 Sum_probs=66.1
Q ss_pred CCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEE-c-CcHHHHHHHHHHHhhhcccCCcEEEEEeCC
Q 000756 510 SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYV-A-PMKALVAEVVGNLSNRLQMYDVKVRELSGD 587 (1300)
Q Consensus 510 ~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~i-a-P~kaLa~q~~~~~~~~l~~~gi~V~~ltGd 587 (1300)
.+..++++||||+|||+.+.-.+...... +.++.++ + |.|.-+.++...+.+. .++.+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~-----------g~~V~lItaDtyR~gAveQLk~yae~---lgvpv~----- 265 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQ-----------NRTVGFITTDTFRSGAVEQFQGYADK---LDVELI----- 265 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-----------CCeEEEEeCCccCccHHHHHHHHhhc---CCCCEE-----
Confidence 35678999999999998765544433222 1233333 3 4455455554444332 233221
Q ss_pred CccchhhhccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEEc
Q 000756 588 QTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (1300)
Q Consensus 588 ~~~~~~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LS 667 (1300)
.+.+|+.+....+... ..+.+++||||=+=..+. -+..+..+........+..-++.+|
T Consensus 266 -------------~~~dp~dL~~al~~l~---~~~~~D~VLIDTAGr~~~-----d~~~l~EL~~l~~~~~p~~~~LVLs 324 (407)
T PRK12726 266 -------------VATSPAELEEAVQYMT---YVNCVDHILIDTVGRNYL-----AEESVSEISAYTDVVHPDLTCFTFS 324 (407)
T ss_pred -------------ecCCHHHHHHHHHHHH---hcCCCCEEEEECCCCCcc-----CHHHHHHHHHHhhccCCceEEEECC
Confidence 1234554422222111 123468999998855431 1222333322222333444466778
Q ss_pred ccCCChHHHHHHHh
Q 000756 668 ATLPNYEDVALFLR 681 (1300)
Q Consensus 668 ATlpn~~dva~~L~ 681 (1300)
||. ...++..++.
T Consensus 325 ag~-~~~d~~~i~~ 337 (407)
T PRK12726 325 SGM-KSADVMTILP 337 (407)
T ss_pred Ccc-cHHHHHHHHH
Confidence 874 5566666554
No 265
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=93.91 E-value=0.36 Score=56.75 Aligned_cols=37 Identities=22% Similarity=0.305 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHHcCCC---eEEEEccCCCccHHHHHHHH
Q 000756 496 LNRVQSRVYKSALSSAD---NILLCAPTGAGKTNVAVLTI 532 (1300)
Q Consensus 496 ln~iQ~~~i~~~l~~~~---nvLi~APTGsGKT~va~l~i 532 (1300)
+.|+|...+..++..++ -+|++||.|.|||..+...+
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A 43 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLA 43 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHH
Confidence 46888888888886643 48999999999998875544
No 266
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=93.90 E-value=0.13 Score=67.23 Aligned_cols=86 Identities=21% Similarity=0.247 Sum_probs=65.5
Q ss_pred CCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhh
Q 000756 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (1300)
Q Consensus 494 ~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~ 573 (1300)
..||+-|.+|+.. ...+++|.|..|||||.+...-|.+.+.... ..+.+|++++-|+..|.++.+++.++
T Consensus 3 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~-------i~P~~IL~lTFT~kAA~em~~Rl~~~ 72 (726)
T TIGR01073 3 AHLNPEQREAVKT---TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKN-------VAPWNILAITFTNKAAREMKERVEKL 72 (726)
T ss_pred cccCHHHHHHHhC---CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCC-------CCHHHeeeeeccHHHHHHHHHHHHHH
Confidence 4689999999874 3567999999999999998877777775421 12347999999999999999998775
Q ss_pred cccCCcEEEEEeCCCccchhhhccceEEEECcchH
Q 000756 574 LQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW 608 (1300)
Q Consensus 574 l~~~gi~V~~ltGd~~~~~~~~~~~~IIV~TPekl 608 (1300)
+.. ....+.|+|...|
T Consensus 73 ~~~-------------------~~~~~~i~TFHs~ 88 (726)
T TIGR01073 73 LGP-------------------VAEDIWISTFHSM 88 (726)
T ss_pred hcc-------------------ccCCcEEEcHHHH
Confidence 431 0134678888875
No 267
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.89 E-value=0.2 Score=59.83 Aligned_cols=41 Identities=22% Similarity=0.473 Sum_probs=26.1
Q ss_pred ccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEEc
Q 000756 620 YTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (1300)
Q Consensus 620 ~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LS 667 (1300)
.....+++||||+|.+.. ...+. +++.++..+..+++|+.+
T Consensus 116 ~~~~~kviIIDEa~~l~~---~a~na----LLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 116 SKSRFKVYLIDEVHMLSR---HSFNA----LLKTLEEPPQHIKFILAT 156 (363)
T ss_pred ccCCceEEEEEChhhcCH---HHHHH----HHHHHhcCCCCeEEEEEc
Confidence 345678999999999863 12222 344455556667777654
No 268
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=93.84 E-value=0.32 Score=55.99 Aligned_cols=20 Identities=30% Similarity=0.394 Sum_probs=16.9
Q ss_pred CeEEEEccCCCccHHHHHHH
Q 000756 512 DNILLCAPTGAGKTNVAVLT 531 (1300)
Q Consensus 512 ~nvLi~APTGsGKT~va~l~ 531 (1300)
-++++.||+|+|||.+|...
T Consensus 59 ~~vll~G~pGTGKT~lA~~i 78 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRM 78 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHH
Confidence 37999999999999988543
No 269
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=93.73 E-value=0.22 Score=58.70 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHcCCC--eEEEEccCCCccHHHHHHH
Q 000756 497 NRVQSRVYKSALSSAD--NILLCAPTGAGKTNVAVLT 531 (1300)
Q Consensus 497 n~iQ~~~i~~~l~~~~--nvLi~APTGsGKT~va~l~ 531 (1300)
++...+.+..++..+. +++++||+|+|||..+...
T Consensus 20 ~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~ 56 (337)
T PRK12402 20 QDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRAL 56 (337)
T ss_pred CHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHH
Confidence 3444555555666655 7999999999999987544
No 270
>PRK08181 transposase; Validated
Probab=93.58 E-value=0.5 Score=53.87 Aligned_cols=60 Identities=25% Similarity=0.408 Sum_probs=36.5
Q ss_pred CHHHHHHHHH---HHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHH
Q 000756 497 NRVQSRVYKS---ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVG 568 (1300)
Q Consensus 497 n~iQ~~~i~~---~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~ 568 (1300)
++.|..++.. ......|++++||+|+|||..+.. +.+.+... +.+++|+ +...|+.++..
T Consensus 89 ~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~A-ia~~a~~~----------g~~v~f~-~~~~L~~~l~~ 151 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAA-IGLALIEN----------GWRVLFT-RTTDLVQKLQV 151 (269)
T ss_pred CHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHH-HHHHHHHc----------CCceeee-eHHHHHHHHHH
Confidence 4445444432 345678999999999999987653 33333322 2356554 45667776543
No 271
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.50 E-value=0.44 Score=53.35 Aligned_cols=50 Identities=22% Similarity=0.300 Sum_probs=36.1
Q ss_pred CCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhh
Q 000756 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (1300)
Q Consensus 511 ~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~ 572 (1300)
+..++|.||+|+|||+.++..+...+.. +.+++|++- .+-..++.+++..
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~-----------ge~~lyvs~-ee~~~~i~~~~~~ 70 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQM-----------GEPGIYVAL-EEHPVQVRRNMAQ 70 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc-----------CCcEEEEEe-eCCHHHHHHHHHH
Confidence 5689999999999999988877776643 336888874 3445566665543
No 272
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=93.50 E-value=0.41 Score=58.99 Aligned_cols=49 Identities=24% Similarity=0.401 Sum_probs=30.0
Q ss_pred CeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHH
Q 000756 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1300)
Q Consensus 512 ~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~ 570 (1300)
..++++||+|+|||..+. ++.+.+.... .+.+++|+. ...+..+....+
T Consensus 149 ~~l~l~G~~G~GKThL~~-ai~~~~~~~~--------~~~~v~yi~-~~~~~~~~~~~~ 197 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLH-AIGNYILEKN--------PNAKVVYVT-SEKFTNDFVNAL 197 (450)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHhC--------CCCeEEEEE-HHHHHHHHHHHH
Confidence 358999999999998764 4444444321 134677774 445555544333
No 273
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=93.44 E-value=0.22 Score=66.57 Aligned_cols=87 Identities=18% Similarity=0.182 Sum_probs=71.1
Q ss_pred CCeEEecCCCCHHHHHHHHHHHhCC--CccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccC
Q 000756 795 YGFAIHHAGMTRGDRQLVEDLFGDG--HVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAG 872 (1300)
Q Consensus 795 ~gv~~~Hagl~~~dR~~ve~~F~~g--~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAG 872 (1300)
..+..++|+++..+|..+.+.|.++ ..-.+++|.+.+.|+|+-+..+||. ||+.- .+....|...||-
T Consensus 736 ~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~----~d~~w------np~~~~Qa~dRa~ 805 (866)
T COG0553 736 IKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVIL----FDPWW------NPAVELQAIDRAH 805 (866)
T ss_pred CcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEE----ecccc------ChHHHHHHHHHHH
Confidence 3578889999999999999999985 5567777889999999999999998 55432 4566889999999
Q ss_pred CCCCCCceEEEEEeCCCcH
Q 000756 873 RPQYDSYGEGIIITGHSEL 891 (1300)
Q Consensus 873 R~g~d~~G~~iil~~~~~~ 891 (1300)
|.|..+.-.++.+......
T Consensus 806 RigQ~~~v~v~r~i~~~ti 824 (866)
T COG0553 806 RIGQKRPVKVYRLITRGTI 824 (866)
T ss_pred HhcCcceeEEEEeecCCcH
Confidence 9887788888888777663
No 274
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=93.44 E-value=0.34 Score=55.02 Aligned_cols=143 Identities=22% Similarity=0.308 Sum_probs=75.9
Q ss_pred CCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcccCCcEEEEE-eCCC
Q 000756 510 SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVREL-SGDQ 588 (1300)
Q Consensus 510 ~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~~gi~V~~l-tGd~ 588 (1300)
.++-++|.|+||+|||..++-.+.+....+ +..|+|++.--. ..+++.++-.... ++....+ +|..
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~----------~~~vly~SlEm~-~~~l~~R~la~~s--~v~~~~i~~g~l 84 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAALNG----------GYPVLYFSLEMS-EEELAARLLARLS--GVPYNKIRSGDL 84 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHHHTT----------SSEEEEEESSS--HHHHHHHHHHHHH--TSTHHHHHCCGC
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHHHhc----------CCeEEEEcCCCC-HHHHHHHHHHHhh--cchhhhhhcccc
Confidence 356789999999999999888887777653 246888876311 2233333333222 1111111 1221
Q ss_pred ccch--------hhhccceEE-EECcch-HHH---HHhhcCCCcccccccEEEEeccccccc-----CChhHHHHHHHHH
Q 000756 589 TLTR--------QQIEETQII-VTTPEK-WDI---ITRKSGDRTYTQLVKLLIIDEIHLLHD-----NRGPVLESIVART 650 (1300)
Q Consensus 589 ~~~~--------~~~~~~~II-V~TPek-ld~---l~r~~~~~~~l~~v~liIiDEaH~l~d-----~rg~~le~iv~rl 650 (1300)
.... ..+....+. ..+|.. ++. ..+.... ....+++||||=+|++.. .+...+..+..++
T Consensus 85 ~~~e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~--~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~L 162 (259)
T PF03796_consen 85 SDEEFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKR--EGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISREL 162 (259)
T ss_dssp HHHHHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHH--HSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHh--hccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 1110 112333444 444442 322 2332221 115689999999999865 2444555555555
Q ss_pred HHHHhhccCCeeEEEEccc
Q 000756 651 VRQIETTKEHIRLVGLSAT 669 (1300)
Q Consensus 651 ~~~~~~~~~~~riV~LSAT 669 (1300)
..... ..++.+|++|..
T Consensus 163 k~lA~--~~~i~vi~~sQl 179 (259)
T PF03796_consen 163 KALAK--ELNIPVIALSQL 179 (259)
T ss_dssp HHHHH--HHTSEEEEEEEB
T ss_pred HHHHH--HcCCeEEEcccc
Confidence 43332 347788888776
No 275
>PRK05642 DNA replication initiation factor; Validated
Probab=93.33 E-value=0.17 Score=56.49 Aligned_cols=36 Identities=17% Similarity=0.264 Sum_probs=24.3
Q ss_pred CeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcC
Q 000756 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (1300)
Q Consensus 512 ~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP 558 (1300)
.+++++||+|+|||..+ .++.+.+... +.+++|+..
T Consensus 46 ~~l~l~G~~G~GKTHLl-~a~~~~~~~~----------~~~v~y~~~ 81 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLL-QAACLRFEQR----------GEPAVYLPL 81 (234)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHhC----------CCcEEEeeH
Confidence 46899999999999874 3445544432 236777653
No 276
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.31 E-value=0.42 Score=53.47 Aligned_cols=40 Identities=18% Similarity=0.216 Sum_probs=30.1
Q ss_pred cCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcC
Q 000756 509 SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (1300)
Q Consensus 509 ~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP 558 (1300)
..++-++|+||||+|||..++..+.+..... +.+++|+..
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~----------g~~vly~s~ 50 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQ----------GKPVLFFSL 50 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhC----------CCceEEEeC
Confidence 3457789999999999998877777766552 236888873
No 277
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=93.31 E-value=0.23 Score=59.17 Aligned_cols=27 Identities=33% Similarity=0.634 Sum_probs=20.0
Q ss_pred CCeEEEEccCCCccHHHHHHHHHHHHHh
Q 000756 511 ADNILLCAPTGAGKTNVAVLTILQQLAL 538 (1300)
Q Consensus 511 ~~nvLi~APTGsGKT~va~l~il~~l~~ 538 (1300)
..|++|-||||+|||.+.-.. ++.+..
T Consensus 42 p~n~~iyG~~GTGKT~~~~~v-~~~l~~ 68 (366)
T COG1474 42 PSNIIIYGPTGTGKTATVKFV-MEELEE 68 (366)
T ss_pred CccEEEECCCCCCHhHHHHHH-HHHHHh
Confidence 357999999999999887554 444443
No 278
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.29 E-value=0.48 Score=59.95 Aligned_cols=41 Identities=22% Similarity=0.455 Sum_probs=26.6
Q ss_pred ccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEEc
Q 000756 620 YTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (1300)
Q Consensus 620 ~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LS 667 (1300)
....++++||||+|.|.. ..+. .+++.++..+..+.+|+.+
T Consensus 121 ~~g~~KV~IIDEvh~Ls~---~a~N----aLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 121 VQGRFKVFMIDEVHMLTN---TAFN----AMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred ccCCceEEEEEChhhCCH---HHHH----HHHHhcccCCCCeEEEEEE
Confidence 345689999999999863 2222 3445556656666776654
No 279
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=93.29 E-value=0.39 Score=56.24 Aligned_cols=29 Identities=31% Similarity=0.576 Sum_probs=21.5
Q ss_pred HHHHHHcCC--CeEEEEccCCCccHHHHHHH
Q 000756 503 VYKSALSSA--DNILLCAPTGAGKTNVAVLT 531 (1300)
Q Consensus 503 ~i~~~l~~~--~nvLi~APTGsGKT~va~l~ 531 (1300)
.+..++.++ .++|+.||+|+|||++|.+.
T Consensus 38 ~lrr~v~~~~l~SmIl~GPPG~GKTTlA~li 68 (436)
T COG2256 38 PLRRAVEAGHLHSMILWGPPGTGKTTLARLI 68 (436)
T ss_pred hHHHHHhcCCCceeEEECCCCCCHHHHHHHH
Confidence 344555543 47999999999999988654
No 280
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.27 E-value=0.44 Score=58.70 Aligned_cols=32 Identities=28% Similarity=0.482 Sum_probs=21.9
Q ss_pred HHHHHHHHcCCC---eEEEEccCCCccHHHHHHHH
Q 000756 501 SRVYKSALSSAD---NILLCAPTGAGKTNVAVLTI 532 (1300)
Q Consensus 501 ~~~i~~~l~~~~---nvLi~APTGsGKT~va~l~i 532 (1300)
.+.+..++..+. .+|++||+|+|||++|.+.+
T Consensus 23 ~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA 57 (472)
T PRK14962 23 KKLIINALKKNSISHAYIFAGPRGTGKTTVARILA 57 (472)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 334444554432 37999999999999886543
No 281
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.27 E-value=0.41 Score=60.29 Aligned_cols=32 Identities=22% Similarity=0.328 Sum_probs=23.1
Q ss_pred HHHHHHHHcCC---CeEEEEccCCCccHHHHHHHH
Q 000756 501 SRVYKSALSSA---DNILLCAPTGAGKTNVAVLTI 532 (1300)
Q Consensus 501 ~~~i~~~l~~~---~nvLi~APTGsGKT~va~l~i 532 (1300)
.+.+..++.++ ..+|+++|.|+|||+++.+.+
T Consensus 25 ~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 25 KAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred HHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHH
Confidence 34455555553 358899999999999987654
No 282
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.24 E-value=0.42 Score=57.86 Aligned_cols=30 Identities=20% Similarity=0.307 Sum_probs=21.7
Q ss_pred HHHHHHcCC---CeEEEEccCCCccHHHHHHHH
Q 000756 503 VYKSALSSA---DNILLCAPTGAGKTNVAVLTI 532 (1300)
Q Consensus 503 ~i~~~l~~~---~nvLi~APTGsGKT~va~l~i 532 (1300)
.+..++.++ ..+|++||.|+|||++|...+
T Consensus 27 ~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a 59 (397)
T PRK14955 27 TIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFA 59 (397)
T ss_pred HHHHHHHhCCcceeEEEECCCCCCHHHHHHHHH
Confidence 445555554 248899999999999886543
No 283
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=93.17 E-value=0.45 Score=65.60 Aligned_cols=64 Identities=19% Similarity=0.224 Sum_probs=47.0
Q ss_pred CCCHHHHHHHHHHHcC-CCeEEEEccCCCccHHHHH--HHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHH
Q 000756 495 QLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAV--LTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567 (1300)
Q Consensus 495 ~ln~iQ~~~i~~~l~~-~~nvLi~APTGsGKT~va~--l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~ 567 (1300)
.||+-|.+++..++.+ +..++|.|..|+|||++.- +.++..+... .+.+|+.++||-.-+.++.
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~---------~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPES---------ERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhc---------cCceEEEEechHHHHHHHH
Confidence 6899999999998875 5578999999999998742 2223332221 2457889999987776663
No 284
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.14 E-value=0.59 Score=57.34 Aligned_cols=98 Identities=14% Similarity=0.235 Sum_probs=57.0
Q ss_pred HHHHHcC----CCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcccCCc
Q 000756 504 YKSALSS----ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDV 579 (1300)
Q Consensus 504 i~~~l~~----~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~~gi 579 (1300)
++.++.+ +..++|.||+|+|||+.++..+...... +.+++|+.--. -..|+..+..+ +|+
T Consensus 69 LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~-----------g~~vlYvs~Ee-s~~qi~~ra~r----lg~ 132 (446)
T PRK11823 69 LDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAA-----------GGKVLYVSGEE-SASQIKLRAER----LGL 132 (446)
T ss_pred HHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhc-----------CCeEEEEEccc-cHHHHHHHHHH----cCC
Confidence 4455543 4678999999999999877665554322 34799988543 34455444332 232
Q ss_pred EEEEEeCCCccchhhhccceEEEECcchHHHHHhhcCCCcccccccEEEEeccccccc
Q 000756 580 KVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD 637 (1300)
Q Consensus 580 ~V~~ltGd~~~~~~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d 637 (1300)
... .+.+.....++.+...... ...++||||+++.+..
T Consensus 133 ~~~----------------~l~~~~e~~l~~i~~~i~~----~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 133 PSD----------------NLYLLAETNLEAILATIEE----EKPDLVVIDSIQTMYS 170 (446)
T ss_pred Chh----------------cEEEeCCCCHHHHHHHHHh----hCCCEEEEechhhhcc
Confidence 110 1334433345444443321 2468999999997753
No 285
>PRK08084 DNA replication initiation factor; Provisional
Probab=93.09 E-value=0.9 Score=50.81 Aligned_cols=34 Identities=24% Similarity=0.288 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHc--CCCeEEEEccCCCccHHHHH
Q 000756 496 LNRVQSRVYKSALS--SADNILLCAPTGAGKTNVAV 529 (1300)
Q Consensus 496 ln~iQ~~~i~~~l~--~~~nvLi~APTGsGKT~va~ 529 (1300)
.|.....++..+.. +..+++++||+|+|||..+.
T Consensus 28 ~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~ 63 (235)
T PRK08084 28 DNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLH 63 (235)
T ss_pred ccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHH
Confidence 45555555555432 23579999999999998765
No 286
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=93.06 E-value=0.44 Score=68.23 Aligned_cols=65 Identities=20% Similarity=0.302 Sum_probs=47.7
Q ss_pred CCCCCHHHHHHHHHHHcC-CCeEEEEccCCCccHHHHH---HHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHH
Q 000756 493 MTQLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAV---LTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567 (1300)
Q Consensus 493 ~~~ln~iQ~~~i~~~l~~-~~nvLi~APTGsGKT~va~---l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~ 567 (1300)
-..|++.|.+++..++.+ +..++|.|+.|+|||++.. -++.+.+.. .+++|+.++||-.-|.++.
T Consensus 1017 ~~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~----------~g~~v~glApT~~Aa~~L~ 1085 (1960)
T TIGR02760 1017 LERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES----------EQLQVIGLAPTHEAVGELK 1085 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh----------cCCeEEEEeChHHHHHHHH
Confidence 357999999999998876 4567889999999998762 233333332 2467999999977776663
No 287
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=93.03 E-value=0.87 Score=57.51 Aligned_cols=31 Identities=29% Similarity=0.508 Sum_probs=21.5
Q ss_pred HHHHHHHcCC---CeEEEEccCCCccHHHHHHHH
Q 000756 502 RVYKSALSSA---DNILLCAPTGAGKTNVAVLTI 532 (1300)
Q Consensus 502 ~~i~~~l~~~---~nvLi~APTGsGKT~va~l~i 532 (1300)
+.+..++..+ ..+|++||.|+|||.++-..+
T Consensus 26 ~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lA 59 (559)
T PRK05563 26 KTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFA 59 (559)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3444455432 347889999999999886654
No 288
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=93.02 E-value=0.2 Score=69.15 Aligned_cols=124 Identities=20% Similarity=0.187 Sum_probs=78.8
Q ss_pred CCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhc
Q 000756 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1300)
Q Consensus 495 ~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l 574 (1300)
.+|+-|.+++. ..+.|++|.|.-|||||.+..--+++.+..+. ..-++++|+=|++.|.++..++.+.+
T Consensus 1 ~~t~~Q~~ai~---~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~--------~~~~il~~tFt~~aa~e~~~ri~~~l 69 (1232)
T TIGR02785 1 QWTDEQWQAIY---TRGQNILVSASAGSGKTAVLVERIIKKILRGV--------DIDRLLVVTFTNAAAREMKERIEEAL 69 (1232)
T ss_pred CCCHHHHHHHh---CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCC--------CHhhEEEEeccHHHHHHHHHHHHHHH
Confidence 36899999997 35678999999999999998887877775431 12369999999999999999998877
Q ss_pred ccCCcEEEEEeCCCccchhhhccceEEEECcchH-HHHHhhcC-CCcccccccEEEEecccc
Q 000756 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRKSG-DRTYTQLVKLLIIDEIHL 634 (1300)
Q Consensus 575 ~~~gi~V~~ltGd~~~~~~~~~~~~IIV~TPekl-d~l~r~~~-~~~~l~~v~liIiDEaH~ 634 (1300)
...- ..-.....+..+...-...-|+|-..| ..+.|... ....-. .+=|.||...
T Consensus 70 ~~~~---~~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP--~F~i~de~e~ 126 (1232)
T TIGR02785 70 QKAL---QQEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDP--SFRILTDTEQ 126 (1232)
T ss_pred HHHH---hcCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCC--CceeCCHHHH
Confidence 5320 000011111122222234568888875 44455442 111112 3345787764
No 289
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=92.94 E-value=0.75 Score=54.93 Aligned_cols=90 Identities=16% Similarity=0.204 Sum_probs=51.1
Q ss_pred CCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcccCCcEEEEEeCCCcc
Q 000756 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590 (1300)
Q Consensus 511 ~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~~gi~V~~ltGd~~~ 590 (1300)
+.-+++.||+|+|||+.++..+...... +.+++|+.--.. ..|+..+..+ +|+..
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~-----------g~~VlYvs~EEs-~~qi~~Ra~r----lg~~~--------- 136 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR-----------GGKVLYVSGEES-PEQIKLRADR----LGIST--------- 136 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc-----------CCeEEEEECCcC-HHHHHHHHHH----cCCCc---------
Confidence 4678999999999999877655443322 247999875433 3444333322 22211
Q ss_pred chhhhccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccc
Q 000756 591 TRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (1300)
Q Consensus 591 ~~~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~ 636 (1300)
.++.+.....++.+..... -...++||||+++.+.
T Consensus 137 -------~~l~l~~e~~le~I~~~i~----~~~~~lVVIDSIq~l~ 171 (372)
T cd01121 137 -------ENLYLLAETNLEDILASIE----ELKPDLVIIDSIQTVY 171 (372)
T ss_pred -------ccEEEEccCcHHHHHHHHH----hcCCcEEEEcchHHhh
Confidence 1122322223444433321 1246899999999874
No 290
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=92.88 E-value=0.55 Score=61.54 Aligned_cols=41 Identities=22% Similarity=0.374 Sum_probs=28.8
Q ss_pred ccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEEc
Q 000756 620 YTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (1300)
Q Consensus 620 ~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LS 667 (1300)
.....+++||||+|.|... ....+++.++..+..+.+|+++
T Consensus 117 ~~~~~KV~IIDEad~lt~~-------a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 117 AESRYKIFIIDEAHMVTPQ-------GFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred hcCCceEEEEechhhcCHH-------HHHHHHHHHhCCCCCeEEEEEe
Confidence 3456899999999999742 2234556667777778888765
No 291
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.81 E-value=1.8 Score=52.11 Aligned_cols=51 Identities=14% Similarity=0.200 Sum_probs=31.3
Q ss_pred CeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEE--cCcHHHHHHHHHHHhh
Q 000756 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYV--APMKALVAEVVGNLSN 572 (1300)
Q Consensus 512 ~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~i--aP~kaLa~q~~~~~~~ 572 (1300)
..++++||||+|||+.+...+....... +.+|.++ =+.|+.+.++...+..
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~----------G~~V~Lit~Dt~R~aA~eQLk~yAe 276 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHM----------GKSVSLYTTDNYRIAAIEQLKRYAD 276 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhc----------CCeEEEecccchhhhHHHHHHHHHH
Confidence 4588999999999998766555442221 2234333 2446667666666544
No 292
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=92.79 E-value=0.79 Score=58.08 Aligned_cols=42 Identities=21% Similarity=0.430 Sum_probs=28.3
Q ss_pred cccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEEc
Q 000756 619 TYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (1300)
Q Consensus 619 ~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LS 667 (1300)
.++...++|||||+|.|.. .. ...+++.++..+..+.+|+.+
T Consensus 128 P~~a~~KVvIIDEad~Ls~---~a----~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 128 PVSARYKVYIIDEVHMLST---AA----FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred hhcCCcEEEEEEChHhCCH---HH----HHHHHHHHHhCCCCeEEEEEe
Confidence 3556789999999999863 12 233445556666777777754
No 293
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.78 E-value=0.67 Score=58.45 Aligned_cols=41 Identities=17% Similarity=0.344 Sum_probs=28.4
Q ss_pred ccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEEc
Q 000756 620 YTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (1300)
Q Consensus 620 ~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LS 667 (1300)
.....+++||||+|.|... .. ..+++.++..+..+.+|+.+
T Consensus 115 ~~~~~KVvIIDEah~Lt~~---A~----NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 115 AQSRYRIFIVDEAHMVTTA---GF----NALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred hcCCceEEEEECCCcCCHH---HH----HHHHHHHhcCCCCeEEEEEe
Confidence 4457899999999998732 22 33455567766777777766
No 294
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.74 E-value=0.96 Score=57.37 Aligned_cols=42 Identities=24% Similarity=0.465 Sum_probs=27.6
Q ss_pred cccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEEc
Q 000756 619 TYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (1300)
Q Consensus 619 ~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LS 667 (1300)
......+++||||+|.|... . ...+++.++..+..+.+|+.+
T Consensus 115 p~~~~~KVvIIdev~~Lt~~---a----~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 115 PSRSRYKIFIIDEVHMLSTN---A----FNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred cccCCceEEEEEChhhCCHH---H----HHHHHHHHHcCCCCeEEEEEe
Confidence 34567899999999998732 1 233445556666667777655
No 295
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=92.71 E-value=0.22 Score=53.13 Aligned_cols=47 Identities=26% Similarity=0.596 Sum_probs=28.6
Q ss_pred HcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHH
Q 000756 508 LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (1300)
Q Consensus 508 l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~ 566 (1300)
+..+.|+++.||||+|||..+...+-..+.. +..++|+ ++..|+.++
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~-----------g~~v~f~-~~~~L~~~l 90 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIRK-----------GYSVLFI-TASDLLDEL 90 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHHT-----------T--EEEE-EHHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhccC-----------CcceeEe-ecCceeccc
Confidence 3556899999999999999876554444432 3356664 555665554
No 296
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=92.63 E-value=0.73 Score=59.65 Aligned_cols=81 Identities=15% Similarity=0.181 Sum_probs=57.9
Q ss_pred ecCCCCHHHHHHHHHHHhCC-C-ccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCCCCC
Q 000756 800 HHAGMTRGDRQLVEDLFGDG-H-VQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD 877 (1300)
Q Consensus 800 ~Hagl~~~dR~~ve~~F~~g-~-i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d 877 (1300)
+.|...-++|...++.|... . .-.|++|.....||||-+.+.||-++.-|||. .+.-.+|.-||+|++
T Consensus 1306 LDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPt----MDaQAQDrChRIGqt------ 1375 (1958)
T KOG0391|consen 1306 LDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPT----MDAQAQDRCHRIGQT------ 1375 (1958)
T ss_pred ecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEecCCCCch----hhhHHHHHHHhhcCc------
Confidence 46788899999999999643 3 35688999999999999988888755445543 344555666666665
Q ss_pred CceEEEEEeCCCc
Q 000756 878 SYGEGIIITGHSE 890 (1300)
Q Consensus 878 ~~G~~iil~~~~~ 890 (1300)
+.-+.|.+.+...
T Consensus 1376 RDVHIYRLISe~T 1388 (1958)
T KOG0391|consen 1376 RDVHIYRLISERT 1388 (1958)
T ss_pred cceEEEEeeccch
Confidence 3556677776544
No 297
>PLN03025 replication factor C subunit; Provisional
Probab=92.60 E-value=1 Score=52.91 Aligned_cols=31 Identities=23% Similarity=0.373 Sum_probs=21.3
Q ss_pred HHHHHHHHcCC--CeEEEEccCCCccHHHHHHH
Q 000756 501 SRVYKSALSSA--DNILLCAPTGAGKTNVAVLT 531 (1300)
Q Consensus 501 ~~~i~~~l~~~--~nvLi~APTGsGKT~va~l~ 531 (1300)
.+.+..+..++ .+++++||+|+|||..+...
T Consensus 22 ~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~l 54 (319)
T PLN03025 22 VSRLQVIARDGNMPNLILSGPPGTGKTTSILAL 54 (319)
T ss_pred HHHHHHHHhcCCCceEEEECCCCCCHHHHHHHH
Confidence 33444444432 47999999999999887543
No 298
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.55 E-value=2.1 Score=50.09 Aligned_cols=125 Identities=24% Similarity=0.262 Sum_probs=62.5
Q ss_pred CCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEc-C-cHHHHHHHHHHHhhhcccCCcEEEEEeCCC
Q 000756 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA-P-MKALVAEVVGNLSNRLQMYDVKVRELSGDQ 588 (1300)
Q Consensus 511 ~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~ia-P-~kaLa~q~~~~~~~~l~~~gi~V~~ltGd~ 588 (1300)
...++++||+|+|||+.+.-.+... ... +.+|+++. . .++.+.++...|..+. ++.+... ..
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l-~~~----------g~~V~Li~~D~~r~~a~eql~~~a~~~---~i~~~~~--~~ 177 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKY-KAQ----------GKKVLLAAGDTFRAAAIEQLQVWGERV---GVPVIAQ--KE 177 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH-Hhc----------CCeEEEEecCccchhhHHHHHHHHHHc---CceEEEe--CC
Confidence 4568899999999998664333222 221 23555543 3 4666666666665543 3332211 11
Q ss_pred ccchhhhccceEEEECcch--HHHHHhhcCCCcccccccEEEEecccccccCChhHHHHHHHHHHHHHh---hccCCeeE
Q 000756 589 TLTRQQIEETQIIVTTPEK--WDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIE---TTKEHIRL 663 (1300)
Q Consensus 589 ~~~~~~~~~~~IIV~TPek--ld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~---~~~~~~ri 663 (1300)
.. .|.. ++.+... ..+.+++||||=+-.++.... +-.-+..+.+.+. ...+.-.+
T Consensus 178 ~~-------------dpa~~v~~~l~~~-----~~~~~D~ViIDTaGr~~~~~~--l~~eL~~~~~v~~~~~~~~p~~~~ 237 (318)
T PRK10416 178 GA-------------DPASVAFDAIQAA-----KARGIDVLIIDTAGRLHNKTN--LMEELKKIKRVIKKADPDAPHEVL 237 (318)
T ss_pred CC-------------CHHHHHHHHHHHH-----HhCCCCEEEEeCCCCCcCCHH--HHHHHHHHHHHHhhhcCCCCceEE
Confidence 10 1111 1222211 224578999999977653211 1111222322221 12344567
Q ss_pred EEEcccCC
Q 000756 664 VGLSATLP 671 (1300)
Q Consensus 664 V~LSATlp 671 (1300)
+.++||..
T Consensus 238 LVl~a~~g 245 (318)
T PRK10416 238 LVLDATTG 245 (318)
T ss_pred EEEECCCC
Confidence 88999964
No 299
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=92.55 E-value=0.66 Score=56.38 Aligned_cols=44 Identities=25% Similarity=0.440 Sum_probs=28.5
Q ss_pred eEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHH
Q 000756 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (1300)
Q Consensus 513 nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~ 566 (1300)
.++++||+|+|||..+ .++.+.+.... .+.+++|+.. ..+..++
T Consensus 138 ~l~l~G~~G~GKThL~-~ai~~~l~~~~--------~~~~v~yi~~-~~~~~~~ 181 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLL-HAIGNEILENN--------PNAKVVYVSS-EKFTNDF 181 (405)
T ss_pred eEEEECCCCCcHHHHH-HHHHHHHHHhC--------CCCcEEEEEH-HHHHHHH
Confidence 5899999999999877 45556555421 1346888753 3344443
No 300
>PRK06904 replicative DNA helicase; Validated
Probab=92.48 E-value=0.68 Score=57.18 Aligned_cols=145 Identities=17% Similarity=0.269 Sum_probs=72.8
Q ss_pred HHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcccCCcEEEEE-e
Q 000756 507 ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVREL-S 585 (1300)
Q Consensus 507 ~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~~gi~V~~l-t 585 (1300)
.+..++-++|.|.||.|||..++-.+.+..... +..++|.+.- --..|+..++-.... ++....+ .
T Consensus 217 Gl~~G~LiiIaarPg~GKTafalnia~~~a~~~----------g~~Vl~fSlE-Ms~~ql~~Rlla~~s--~v~~~~i~~ 283 (472)
T PRK06904 217 GLQPSDLIIVAARPSMGKTTFAMNLCENAAMAS----------EKPVLVFSLE-MPAEQIMMRMLASLS--RVDQTKIRT 283 (472)
T ss_pred ccCCCcEEEEEeCCCCChHHHHHHHHHHHHHhc----------CCeEEEEecc-CCHHHHHHHHHHhhC--CCCHHHhcc
Confidence 455667789999999999997754444433321 2346665432 335566655543332 2222111 2
Q ss_pred CCCccchh----------hh-ccceEEEE-C----cchHHHHHhhcCCCcccccccEEEEeccccccc-----CChhHHH
Q 000756 586 GDQTLTRQ----------QI-EETQIIVT-T----PEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-----NRGPVLE 644 (1300)
Q Consensus 586 Gd~~~~~~----------~~-~~~~IIV~-T----Pekld~l~r~~~~~~~l~~v~liIiDEaH~l~d-----~rg~~le 644 (1300)
|+ .++.. .+ ...++.|. + +..+....|+... ....+++||||=++++.. .|...+.
T Consensus 284 g~-~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~--~~~~~~lvvIDYLqli~~~~~~~~r~~ei~ 360 (472)
T PRK06904 284 GQ-NLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYR--ENGGLSLIMVDYLQLMRAPGFEDNRTLEIA 360 (472)
T ss_pred CC-CCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHH--hCCCCCEEEEecHHhcCCCCCCCcHHHHHH
Confidence 31 11111 12 13345553 3 3333222332211 112478999999999863 2333344
Q ss_pred HHHHHHHHHHhhccCCeeEEEEccc
Q 000756 645 SIVARTVRQIETTKEHIRLVGLSAT 669 (1300)
Q Consensus 645 ~iv~rl~~~~~~~~~~~riV~LSAT 669 (1300)
.+... ++.+.. .-++.||++|--
T Consensus 361 ~isr~-LK~lAk-el~ipVi~lsQL 383 (472)
T PRK06904 361 EISRS-LKALAK-ELKVPVVALSQL 383 (472)
T ss_pred HHHHH-HHHHHH-HhCCeEEEEEec
Confidence 44333 333322 347888888844
No 301
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.46 E-value=0.61 Score=57.98 Aligned_cols=23 Identities=39% Similarity=0.585 Sum_probs=17.6
Q ss_pred EEEEccCCCccHHHHHHHHHHHHH
Q 000756 514 ILLCAPTGAGKTNVAVLTILQQLA 537 (1300)
Q Consensus 514 vLi~APTGsGKT~va~l~il~~l~ 537 (1300)
+|++||.|+|||+++.. +.+.+.
T Consensus 39 ~Lf~GppGtGKTTlA~~-lA~~l~ 61 (504)
T PRK14963 39 YLFSGPRGVGKTTTARL-IAMAVN 61 (504)
T ss_pred EEEECCCCCCHHHHHHH-HHHHHh
Confidence 49999999999998854 344443
No 302
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.45 E-value=0.49 Score=59.07 Aligned_cols=41 Identities=20% Similarity=0.392 Sum_probs=27.2
Q ss_pred ccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEEc
Q 000756 620 YTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (1300)
Q Consensus 620 ~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LS 667 (1300)
.....+++||||+|.+... .. ..+++.++..+..+.+|+.+
T Consensus 116 ~~g~~kViIIDEa~~ls~~---a~----naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 116 SQGRYKVYLIDEVHMLSKQ---SF----NALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred hcCCcEEEEEechhhccHH---HH----HHHHHHHhcCCCCceEEEEE
Confidence 4456789999999998632 22 23445556666677777655
No 303
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=92.43 E-value=0.55 Score=62.88 Aligned_cols=136 Identities=16% Similarity=0.130 Sum_probs=85.2
Q ss_pred CCCCCHHHHHHHHHHH----cCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHH
Q 000756 493 MTQLNRVQSRVYKSAL----SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVG 568 (1300)
Q Consensus 493 ~~~ln~iQ~~~i~~~l----~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~ 568 (1300)
...+.++|.+.+..+. ....+.+++...|.|||......+......... ..+..++++|+ +++..+.+
T Consensus 336 ~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~-------~~~~~liv~p~-s~~~nw~~ 407 (866)
T COG0553 336 SAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKV-------YLGPALIVVPA-SLLSNWKR 407 (866)
T ss_pred hhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccC-------CCCCeEEEecH-HHHHHHHH
Confidence 4578888999886644 124567888999999999887666653322211 12468888898 66778888
Q ss_pred HHhhhcccCCcEEEEEeCCCcc-c--hh---hhcc------ceEEEECcchHHHHHhhcCCCcccccccEEEEecccccc
Q 000756 569 NLSNRLQMYDVKVRELSGDQTL-T--RQ---QIEE------TQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (1300)
Q Consensus 569 ~~~~~l~~~gi~V~~ltGd~~~-~--~~---~~~~------~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~ 636 (1300)
++.++...+.. +....|.... . .. .... .+++++|.+.+.... .......-.....+|+||+|.+.
T Consensus 408 e~~k~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~-~~~~~l~~~~~~~~v~DEa~~ik 485 (866)
T COG0553 408 EFEKFAPDLRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFL-VDHGGLKKIEWDRVVLDEAHRIK 485 (866)
T ss_pred HHhhhCccccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhh-hhHHHHhhceeeeeehhhHHHHh
Confidence 88665543322 7777776641 1 11 1122 789999999653310 01111122346789999999976
Q ss_pred cC
Q 000756 637 DN 638 (1300)
Q Consensus 637 d~ 638 (1300)
..
T Consensus 486 n~ 487 (866)
T COG0553 486 ND 487 (866)
T ss_pred hh
Confidence 53
No 304
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=92.33 E-value=0.76 Score=64.29 Aligned_cols=66 Identities=18% Similarity=0.188 Sum_probs=47.3
Q ss_pred CCCHHHHHHHHHHHcC-CCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHH
Q 000756 495 QLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567 (1300)
Q Consensus 495 ~ln~iQ~~~i~~~l~~-~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~ 567 (1300)
.|++.|.+++..++.+ +..++|.|..|+|||++.- +++..+..... ..+.+|+.++||-.-|.++.
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~-~v~~~~~~l~~------~~~~~V~glAPTgrAAk~L~ 1033 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFR-AVMSAVNTLPE------SERPRVVGLGPTHRAVGEMR 1033 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHH-HHHHHHHHhhc------ccCceEEEECCcHHHHHHHH
Confidence 7899999999999986 4678999999999998742 33333322100 12457899999987776553
No 305
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=92.25 E-value=2.3 Score=48.69 Aligned_cols=52 Identities=21% Similarity=0.280 Sum_probs=33.3
Q ss_pred CeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEc--CcHHHHHHHHHHHhhhc
Q 000756 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA--PMKALVAEVVGNLSNRL 574 (1300)
Q Consensus 512 ~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~ia--P~kaLa~q~~~~~~~~l 574 (1300)
..+++++|+|+|||+.+.-.+... ... +.+++++. +.|.-+.++...|.++.
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l-~~~----------g~~V~li~~D~~r~~a~~ql~~~~~~~ 126 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKL-KKQ----------GKSVLLAAGDTFRAAAIEQLEEWAKRL 126 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH-Hhc----------CCEEEEEeCCCCCHHHHHHHHHHHHhC
Confidence 467888999999998765444333 221 33565554 45776777777776554
No 306
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.25 E-value=1.9 Score=52.10 Aligned_cols=130 Identities=14% Similarity=0.147 Sum_probs=63.6
Q ss_pred CCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCc-HHHHHHHHHHHhhhcccCCcEEEEEeCCC
Q 000756 510 SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM-KALVAEVVGNLSNRLQMYDVKVRELSGDQ 588 (1300)
Q Consensus 510 ~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~-kaLa~q~~~~~~~~l~~~gi~V~~ltGd~ 588 (1300)
.++.+.++||||+|||+.......+.+..... ....++.+.+ |.-+.++...+.+.+ |+.+..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~--------~~v~~i~~d~~rigalEQL~~~a~il---Gvp~~~----- 253 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGA--------DKVALLTTDSYRIGGHEQLRIYGKLL---GVSVRS----- 253 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC--------CeEEEEecCCcchhHHHHHHHHHHHc---CCceec-----
Confidence 34678999999999998764333333322210 1112333333 445555555555543 333321
Q ss_pred ccchhhhccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccCChhHHHHHHHHHHHHHhh-ccCCeeEEEEc
Q 000756 589 TLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIET-TKEHIRLVGLS 667 (1300)
Q Consensus 589 ~~~~~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~-~~~~~riV~LS 667 (1300)
+.++..+..... .++..++++||.+=+ .+....+...+ ..+.. ..+.-.++.||
T Consensus 254 -------------v~~~~dl~~al~------~l~~~d~VLIDTaGr-----sqrd~~~~~~l-~~l~~~~~~~~~~LVl~ 308 (420)
T PRK14721 254 -------------IKDIADLQLMLH------ELRGKHMVLIDTVGM-----SQRDQMLAEQI-AMLSQCGTQVKHLLLLN 308 (420)
T ss_pred -------------CCCHHHHHHHHH------HhcCCCEEEecCCCC-----CcchHHHHHHH-HHHhccCCCceEEEEEc
Confidence 222332222222 134568899998632 22222222222 22222 22344667899
Q ss_pred ccCCChHHHHHHHh
Q 000756 668 ATLPNYEDVALFLR 681 (1300)
Q Consensus 668 ATlpn~~dva~~L~ 681 (1300)
||. ...++..++.
T Consensus 309 at~-~~~~~~~~~~ 321 (420)
T PRK14721 309 ATS-SGDTLDEVIS 321 (420)
T ss_pred CCC-CHHHHHHHHH
Confidence 995 4556655554
No 307
>PRK06921 hypothetical protein; Provisional
Probab=92.18 E-value=0.5 Score=53.84 Aligned_cols=44 Identities=18% Similarity=0.292 Sum_probs=28.7
Q ss_pred CCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHH
Q 000756 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAE 565 (1300)
Q Consensus 511 ~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q 565 (1300)
..++++.||||+|||..+. +|.+.+... .+..++|+.. ..+..+
T Consensus 117 ~~~l~l~G~~G~GKThLa~-aia~~l~~~---------~g~~v~y~~~-~~l~~~ 160 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLT-AAANELMRK---------KGVPVLYFPF-VEGFGD 160 (266)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHhhh---------cCceEEEEEH-HHHHHH
Confidence 5689999999999998764 555555432 1346777653 344443
No 308
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=92.15 E-value=0.16 Score=59.72 Aligned_cols=54 Identities=22% Similarity=0.420 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHH
Q 000756 498 RVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALV 563 (1300)
Q Consensus 498 ~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa 563 (1300)
+-..+.+..+...+.|++|+||||||||+.. -+++..+.. ..+++.+-.+.+|.
T Consensus 149 ~~~~~~l~~~v~~~~nilI~G~tGSGKTTll-~aLl~~i~~-----------~~rivtiEd~~El~ 202 (344)
T PRK13851 149 GDLEAFLHACVVGRLTMLLCGPTGSGKTTMS-KTLISAIPP-----------QERLITIEDTLELV 202 (344)
T ss_pred HHHHHHHHHHHHcCCeEEEECCCCccHHHHH-HHHHcccCC-----------CCCEEEECCCcccc
Confidence 3455667777888899999999999999854 334433321 23678788877663
No 309
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=92.12 E-value=0.51 Score=58.59 Aligned_cols=72 Identities=18% Similarity=0.201 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHcC----C----CeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHH
Q 000756 498 RVQSRVYKSALSS----A----DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (1300)
Q Consensus 498 ~iQ~~~i~~~l~~----~----~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~ 569 (1300)
|+|.-++..++.- + ..+++.-|=|.|||..+...++..+.... ..+..|+++++++.-|..+++.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g-------~~~~~i~~~A~~~~QA~~~f~~ 73 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDG-------EPGAEIYCAANTRDQAKIVFDE 73 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCC-------ccCceEEEEeCCHHHHHHHHHH
Confidence 5677777776621 1 24777889999999876555454443221 1246799999999999999999
Q ss_pred Hhhhccc
Q 000756 570 LSNRLQM 576 (1300)
Q Consensus 570 ~~~~l~~ 576 (1300)
+...+..
T Consensus 74 ~~~~i~~ 80 (477)
T PF03354_consen 74 AKKMIEA 80 (477)
T ss_pred HHHHHHh
Confidence 8887653
No 310
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=92.10 E-value=1 Score=48.44 Aligned_cols=50 Identities=6% Similarity=0.176 Sum_probs=29.2
Q ss_pred HHhhcCCCcccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEEc
Q 000756 611 ITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (1300)
Q Consensus 611 l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LS 667 (1300)
+.............++|||||+|.+... ..+. ++..++..++...+|+++
T Consensus 84 i~~~~~~~~~~~~~kviiide~~~l~~~---~~~~----Ll~~le~~~~~~~~il~~ 133 (188)
T TIGR00678 84 LVEFLSRTPQESGRRVVIIEDAERMNEA---AANA----LLKTLEEPPPNTLFILIT 133 (188)
T ss_pred HHHHHccCcccCCeEEEEEechhhhCHH---HHHH----HHHHhcCCCCCeEEEEEE
Confidence 3444433345567899999999998632 2232 334445545555666553
No 311
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=92.09 E-value=0.45 Score=54.16 Aligned_cols=36 Identities=25% Similarity=0.215 Sum_probs=24.9
Q ss_pred CCCHHHHHHHHHHH---c-CCCeEEEEccCCCccHHHHHH
Q 000756 495 QLNRVQSRVYKSAL---S-SADNILLCAPTGAGKTNVAVL 530 (1300)
Q Consensus 495 ~ln~iQ~~~i~~~l---~-~~~nvLi~APTGsGKT~va~l 530 (1300)
.+++.+.+++..+- . +...++++||+|+|||+.+..
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~ 62 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRN 62 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 44556666665542 3 344789999999999987654
No 312
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=92.07 E-value=0.42 Score=58.35 Aligned_cols=69 Identities=14% Similarity=0.272 Sum_probs=48.4
Q ss_pred CCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHH
Q 000756 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1300)
Q Consensus 495 ~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~ 570 (1300)
+.-+-|-+++.. ..+.-++|.|..|||||++|+.-+...+..++.. + ...-|+++.|.+-+..=+.+.+
T Consensus 212 TIQkEQneIIR~--ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~---l--~~k~vlvl~PN~vFleYis~VL 280 (747)
T COG3973 212 TIQKEQNEIIRF--EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGP---L--QAKPVLVLGPNRVFLEYISRVL 280 (747)
T ss_pred HhhHhHHHHHhc--cCCCeEEEecCCCCCchhHHHHHHHHHHhccccc---c--ccCceEEEcCcHHHHHHHHHhc
Confidence 344455555552 4466789999999999999998887777776532 2 2233999999998876554433
No 313
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=91.97 E-value=2.2 Score=50.39 Aligned_cols=55 Identities=11% Similarity=0.060 Sum_probs=35.0
Q ss_pred HHHHHhhcCCCcccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEEccc
Q 000756 608 WDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (1300)
Q Consensus 608 ld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LSAT 669 (1300)
...+.+...........+++|||++|.|+.. .-..+++.++..+++..+|++|..
T Consensus 117 iR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~-------AaNaLLKtLEEPp~~t~fiL~t~~ 171 (342)
T PRK06964 117 VRALLDFCGVGTHRGGARVVVLYPAEALNVA-------AANALLKTLEEPPPGTVFLLVSAR 171 (342)
T ss_pred HHHHHHHhccCCccCCceEEEEechhhcCHH-------HHHHHHHHhcCCCcCcEEEEEECC
Confidence 3445554444455677899999999998632 123345556776667777776654
No 314
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=91.96 E-value=0.7 Score=54.03 Aligned_cols=52 Identities=15% Similarity=0.259 Sum_probs=31.8
Q ss_pred HHHhhcCCCcccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEEcc
Q 000756 610 IITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSA 668 (1300)
Q Consensus 610 ~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LSA 668 (1300)
.+.+...........++||||||+.|..+. ...+++.++..+.+.++++.+-
T Consensus 96 ~~~~~~~~~~~~~~~kviiidead~mt~~A-------~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 96 ELAEFLSESPLEGGYKVVIIDEADKLTEDA-------ANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred HHHHHhccCCCCCCceEEEeCcHHHHhHHH-------HHHHHHHhccCCCCeEEEEEcC
Confidence 334433322334678999999999987532 2234444566667777777664
No 315
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=91.82 E-value=0.79 Score=57.53 Aligned_cols=41 Identities=24% Similarity=0.350 Sum_probs=26.2
Q ss_pred ccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEEc
Q 000756 620 YTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (1300)
Q Consensus 620 ~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LS 667 (1300)
.....+++||||||.|... . ...+++.++..+..+.+|+++
T Consensus 116 ~~~~~KVIIIDEad~Lt~~---A----~NaLLKtLEEPp~~tvfIL~T 156 (605)
T PRK05896 116 TTFKYKVYIIDEAHMLSTS---A----WNALLKTLEEPPKHVVFIFAT 156 (605)
T ss_pred hhCCcEEEEEechHhCCHH---H----HHHHHHHHHhCCCcEEEEEEC
Confidence 4456789999999998632 1 233445556655666666655
No 316
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=91.79 E-value=0.25 Score=53.13 Aligned_cols=36 Identities=28% Similarity=0.379 Sum_probs=31.9
Q ss_pred CCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHH
Q 000756 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVA 528 (1300)
Q Consensus 493 ~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va 528 (1300)
...+++-|.+.+..++..+.+++++||||||||+..
T Consensus 7 ~g~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 7 QGTFSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred cCCCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 346788899999999999999999999999999865
No 317
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=91.77 E-value=0.67 Score=56.78 Aligned_cols=44 Identities=30% Similarity=0.496 Sum_probs=28.8
Q ss_pred CeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHH
Q 000756 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567 (1300)
Q Consensus 512 ~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~ 567 (1300)
..++++||+|+|||..+. ++.+.+... +.+++|+.. ..+..+..
T Consensus 142 npl~L~G~~G~GKTHLl~-Ai~~~l~~~----------~~~v~yi~~-~~f~~~~~ 185 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQ-AAVHALRES----------GGKILYVRS-ELFTEHLV 185 (445)
T ss_pred ceEEEEcCCCCCHHHHHH-HHHHHHHHc----------CCCEEEeeH-HHHHHHHH
Confidence 358999999999998765 555555432 346888764 34444433
No 318
>PRK04328 hypothetical protein; Provisional
Probab=91.77 E-value=1.4 Score=49.68 Aligned_cols=49 Identities=24% Similarity=0.294 Sum_probs=32.9
Q ss_pred CCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHh
Q 000756 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (1300)
Q Consensus 511 ~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~ 571 (1300)
+..++|.||+|+|||..++..+.+.+.. +-+++|++= -+-..++.+.++
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~-----------ge~~lyis~-ee~~~~i~~~~~ 71 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQM-----------GEPGVYVAL-EEHPVQVRRNMR 71 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhc-----------CCcEEEEEe-eCCHHHHHHHHH
Confidence 5678999999999999888777776544 235777763 223334444433
No 319
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=91.74 E-value=1.2 Score=55.35 Aligned_cols=41 Identities=20% Similarity=0.418 Sum_probs=28.0
Q ss_pred ccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEEc
Q 000756 620 YTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (1300)
Q Consensus 620 ~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LS 667 (1300)
.....+++||||||.|.. .... .+++.++..+...++|+.+
T Consensus 114 ~~~~~KVvIIDEad~Lt~---~A~N----ALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 114 SMARFKIFIIDEVHMLTK---EAFN----ALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred ccCCeEEEEEECcccCCH---HHHH----HHHHHHhhcCCceEEEEEE
Confidence 446789999999999863 2222 3455556667777777765
No 320
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.71 E-value=1.8 Score=54.26 Aligned_cols=41 Identities=24% Similarity=0.493 Sum_probs=27.7
Q ss_pred ccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEEc
Q 000756 620 YTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (1300)
Q Consensus 620 ~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LS 667 (1300)
.....+++||||+|.|... .. ..+++.++..+..+.+|+.+
T Consensus 116 ~~~~~kVvIIDEad~ls~~---a~----naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 116 TRGRFKVYIIDEVHMLSKS---AF----NAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred ccCCceEEEEcCcccCCHH---HH----HHHHHHHhCCCCCEEEEEEe
Confidence 4456789999999998631 22 23455556666777777765
No 321
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.52 E-value=1.7 Score=56.13 Aligned_cols=125 Identities=18% Similarity=0.217 Sum_probs=62.7
Q ss_pred CCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcC--cHHHHHHHHHHHhhhcccCCcEEEEEeCCC
Q 000756 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP--MKALVAEVVGNLSNRLQMYDVKVRELSGDQ 588 (1300)
Q Consensus 511 ~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP--~kaLa~q~~~~~~~~l~~~gi~V~~ltGd~ 588 (1300)
+..+.++||||+|||+.+........... | +.+|.++.- .|.=+.++...+.+.+ |+.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~----G-----~kkV~lit~Dt~RigA~eQL~~~a~~~---gvpv~------ 246 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVARE----G-----ADQLALLTTDSFRIGALEQLRIYGRIL---GVPVH------ 246 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHc----C-----CCeEEEecCcccchHHHHHHHHHHHhC---CCCcc------
Confidence 45688999999999876644333332221 1 124444332 3444555555555443 33221
Q ss_pred ccchhhhccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEEcc
Q 000756 589 TLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSA 668 (1300)
Q Consensus 589 ~~~~~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LSA 668 (1300)
++.+|+.+....+. +...++|+||=+=+.+.+.. +...+..+ .....+.-.++.+||
T Consensus 247 ------------~~~~~~~l~~al~~------~~~~D~VLIDTAGRs~~d~~--l~eel~~l---~~~~~p~e~~LVLsA 303 (767)
T PRK14723 247 ------------AVKDAADLRFALAA------LGDKHLVLIDTVGMSQRDRN--VSEQIAML---CGVGRPVRRLLLLNA 303 (767)
T ss_pred ------------ccCCHHHHHHHHHH------hcCCCEEEEeCCCCCccCHH--HHHHHHHH---hccCCCCeEEEEECC
Confidence 22355544222222 22457899998866543211 22222222 222344556778899
Q ss_pred cCCChHHHH
Q 000756 669 TLPNYEDVA 677 (1300)
Q Consensus 669 Tlpn~~dva 677 (1300)
|. ..+++.
T Consensus 304 t~-~~~~l~ 311 (767)
T PRK14723 304 AS-HGDTLN 311 (767)
T ss_pred CC-cHHHHH
Confidence 95 445544
No 322
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=91.43 E-value=0.36 Score=49.48 Aligned_cols=80 Identities=20% Similarity=0.374 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHHHhCCCc---cEEEeccc--cccccCCCCc---EEEEecceeccCCCC-----------------Cc--
Q 000756 804 MTRGDRQLVEDLFGDGHV---QVLVSTAT--LAWGVNLPAH---TVIIKGTQIYNPEKG-----------------AW-- 856 (1300)
Q Consensus 804 l~~~dR~~ve~~F~~g~i---~VLVaT~t--la~GVdlPav---~vVI~~t~~yd~~~g-----------------~~-- 856 (1300)
....+...+++.|+...- .||+|+.- ++.|||+|+. .|||.|- +|-++.. .+
T Consensus 28 ~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~gl-Pfp~~~d~~~~~~~~~~~~~~~~~~~~~ 106 (142)
T smart00491 28 KDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGI-PFPNPDSPILRARLEYLDEKGGIRPFDE 106 (142)
T ss_pred CCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEec-CCCCCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 333455678888886433 69998887 9999999984 4555543 3332211 00
Q ss_pred --ccCCHHHHHHhhhccCCCCCCCceEEEEE
Q 000756 857 --TELSPLDIMQMLGRAGRPQYDSYGEGIII 885 (1300)
Q Consensus 857 --~~~S~~d~lQr~GRAGR~g~d~~G~~iil 885 (1300)
.+.....+.|.+||+-|.. +..|..+++
T Consensus 107 ~~~~~a~~~~~Qa~GR~iR~~-~D~g~i~l~ 136 (142)
T smart00491 107 VYLFDAMRALAQAIGRAIRHK-NDYGVVVLL 136 (142)
T ss_pred HHHHHHHHHHHHHhCccccCc-cceEEEEEE
Confidence 1123456789999999976 456765555
No 323
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=91.32 E-value=2 Score=52.69 Aligned_cols=46 Identities=17% Similarity=0.442 Sum_probs=29.1
Q ss_pred CeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHH
Q 000756 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567 (1300)
Q Consensus 512 ~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~ 567 (1300)
..++++||+|+|||..+. ++.+.+.... .+.+++|+... .+..++.
T Consensus 131 n~l~lyG~~G~GKTHLl~-ai~~~l~~~~--------~~~~v~yi~~~-~f~~~~~ 176 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQ-SIGNYVVQNE--------PDLRVMYITSE-KFLNDLV 176 (440)
T ss_pred CeEEEEcCCCCcHHHHHH-HHHHHHHHhC--------CCCeEEEEEHH-HHHHHHH
Confidence 359999999999998764 5555554421 13478887643 3444443
No 324
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=91.31 E-value=0.45 Score=55.40 Aligned_cols=44 Identities=20% Similarity=0.256 Sum_probs=32.7
Q ss_pred CCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHH
Q 000756 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAE 565 (1300)
Q Consensus 511 ~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q 565 (1300)
+.-++|++|+|||||+.++..+.+.... +.+++||..-.++-.+
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~-----------g~~v~yId~E~~~~~~ 98 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKA-----------GGTAAFIDAEHALDPV 98 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc-----------CCcEEEEcccchhHHH
Confidence 4568899999999999988777666543 3468888776665554
No 325
>PRK05748 replicative DNA helicase; Provisional
Probab=91.24 E-value=0.84 Score=56.23 Aligned_cols=145 Identities=16% Similarity=0.230 Sum_probs=72.7
Q ss_pred HcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcccCCcEEEE-EeC
Q 000756 508 LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRE-LSG 586 (1300)
Q Consensus 508 l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~~gi~V~~-ltG 586 (1300)
+..++-++|.|+||+|||..++-.+.+....+ +..++|+.. -.-..|+..++-.... ++.... ..|
T Consensus 200 ~~~G~livIaarpg~GKT~~al~ia~~~a~~~----------g~~v~~fSl-Ems~~~l~~R~l~~~~--~v~~~~i~~~ 266 (448)
T PRK05748 200 LQPNDLIIVAARPSVGKTAFALNIAQNVATKT----------DKNVAIFSL-EMGAESLVMRMLCAEG--NIDAQRLRTG 266 (448)
T ss_pred CCCCceEEEEeCCCCCchHHHHHHHHHHHHhC----------CCeEEEEeC-CCCHHHHHHHHHHHhc--CCCHHHhhcC
Confidence 34567789999999999998876665544332 234666542 2334555555532222 111111 122
Q ss_pred CCccch--------hhhccceEEEE-Ccc----hHHHHHhhcCCCcccccccEEEEecccccccC------ChhHHHHHH
Q 000756 587 DQTLTR--------QQIEETQIIVT-TPE----KWDIITRKSGDRTYTQLVKLLIIDEIHLLHDN------RGPVLESIV 647 (1300)
Q Consensus 587 d~~~~~--------~~~~~~~IIV~-TPe----kld~l~r~~~~~~~l~~v~liIiDEaH~l~d~------rg~~le~iv 647 (1300)
...... ..+.+..+.|. +|. .+....|+.... ...+++||||=+|++... |...+..+.
T Consensus 267 ~l~~~e~~~~~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~--~~~~~~vvIDyL~li~~~~~~~~~r~~~i~~i~ 344 (448)
T PRK05748 267 QLTDDDWPKLTIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQE--HGGLGLILIDYLQLIQGSGRSGENRQQEVSEIS 344 (448)
T ss_pred CCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHh--cCCCCEEEEccchhcCCCCCCCcCHHHHHHHHH
Confidence 222111 11234455554 443 222222222110 125889999999998521 222334444
Q ss_pred HHHHHHHhhccCCeeEEEEccc
Q 000756 648 ARTVRQIETTKEHIRLVGLSAT 669 (1300)
Q Consensus 648 ~rl~~~~~~~~~~~riV~LSAT 669 (1300)
..+ +.+.. .-++.+|++|-.
T Consensus 345 ~~L-K~lAk-e~~i~vi~lsQl 364 (448)
T PRK05748 345 RSL-KALAK-ELKVPVIALSQL 364 (448)
T ss_pred HHH-HHHHH-HhCCeEEEeccc
Confidence 333 22222 346778888876
No 326
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=91.20 E-value=1.4 Score=53.70 Aligned_cols=50 Identities=22% Similarity=0.288 Sum_probs=29.9
Q ss_pred CeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEc--CcHHHHHHHHHHHhh
Q 000756 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA--PMKALVAEVVGNLSN 572 (1300)
Q Consensus 512 ~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~ia--P~kaLa~q~~~~~~~ 572 (1300)
..++++|++|+|||+++.-.+.. +... +.+++++. +.|.-+.++...+..
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~-L~~~----------g~kV~lV~~D~~R~aa~eQL~~la~ 147 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARY-FKKK----------GLKVGLVAADTYRPAAYDQLKQLAE 147 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHH-HHHc----------CCeEEEecCCCCCHHHHHHHHHHHH
Confidence 46899999999999887654433 3332 22344333 345555555555544
No 327
>PRK08760 replicative DNA helicase; Provisional
Probab=91.19 E-value=0.85 Score=56.43 Aligned_cols=144 Identities=19% Similarity=0.243 Sum_probs=73.5
Q ss_pred HcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcccCCcEEEEE-eC
Q 000756 508 LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVREL-SG 586 (1300)
Q Consensus 508 l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~~gi~V~~l-tG 586 (1300)
+..++-++|.|+||.|||..++-.+.+....+ +..|+|.+.- .-..|+..++...... +....+ .|
T Consensus 226 ~~~G~LivIaarPg~GKTafal~iA~~~a~~~----------g~~V~~fSlE-Ms~~ql~~Rl~a~~s~--i~~~~i~~g 292 (476)
T PRK08760 226 LQPTDLIILAARPAMGKTTFALNIAEYAAIKS----------KKGVAVFSME-MSASQLAMRLISSNGR--INAQRLRTG 292 (476)
T ss_pred CCCCceEEEEeCCCCChhHHHHHHHHHHHHhc----------CCceEEEecc-CCHHHHHHHHHHhhCC--CcHHHHhcC
Confidence 45567789999999999998776665544332 2246665442 2234555555433221 111111 22
Q ss_pred CCccch--------hhhccceEEEEC-c----chHHHHHhhcCCCcccccccEEEEeccccccc-----CChhHHHHHHH
Q 000756 587 DQTLTR--------QQIEETQIIVTT-P----EKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-----NRGPVLESIVA 648 (1300)
Q Consensus 587 d~~~~~--------~~~~~~~IIV~T-P----ekld~l~r~~~~~~~l~~v~liIiDEaH~l~d-----~rg~~le~iv~ 648 (1300)
...... ..+.+..+.|.. | +.+....|+.. .-..+++||||=++++.. .|...+..+..
T Consensus 293 ~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~---~~~~~~lVvIDyLql~~~~~~~~~r~~ei~~Isr 369 (476)
T PRK08760 293 ALEDEDWARVTGAIKMLKETKIFIDDTPGVSPEVLRSKCRRLK---REHDLGLIVIDYLQLMSVPGNSENRATEISEISR 369 (476)
T ss_pred CCCHHHHHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHH---HhcCCCEEEEecHHhcCCCCCCcccHHHHHHHHH
Confidence 211110 112345565542 2 22222233332 113479999999999852 23334444443
Q ss_pred HHHHHHhhccCCeeEEEEccc
Q 000756 649 RTVRQIETTKEHIRLVGLSAT 669 (1300)
Q Consensus 649 rl~~~~~~~~~~~riV~LSAT 669 (1300)
.+ +.+.. .-++.||++|-.
T Consensus 370 ~L-K~lAk-el~ipVi~lsQL 388 (476)
T PRK08760 370 SL-KGLAK-ELNVPVIALSQL 388 (476)
T ss_pred HH-HHHHH-HhCCEEEEeecc
Confidence 33 33332 347788888754
No 328
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=90.99 E-value=3.5 Score=47.02 Aligned_cols=129 Identities=16% Similarity=0.174 Sum_probs=63.9
Q ss_pred CCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEc--CcH-HHHHHHHHHHhhhcccCCcEEEEEeCC
Q 000756 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA--PMK-ALVAEVVGNLSNRLQMYDVKVRELSGD 587 (1300)
Q Consensus 511 ~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~ia--P~k-aLa~q~~~~~~~~l~~~gi~V~~ltGd 587 (1300)
.+.+++++|+|+|||+.+...+.... .. +.++.++. +.+ +.+.|+. ......++.+..
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~-~~----------~~~v~~i~~D~~ri~~~~ql~----~~~~~~~~~~~~---- 135 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFH-GK----------KKTVGFITTDHSRIGTVQQLQ----DYVKTIGFEVIA---- 135 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH-Hc----------CCeEEEEecCCCCHHHHHHHH----HHhhhcCceEEe----
Confidence 46799999999999997765544332 21 12333333 333 3444433 222222322211
Q ss_pred CccchhhhccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEEc
Q 000756 588 QTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (1300)
Q Consensus 588 ~~~~~~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LS 667 (1300)
..+|+.+....+... ....+++||||-+=..+.+ ...++.+. ..+....+...++.+|
T Consensus 136 --------------~~~~~~l~~~l~~l~---~~~~~D~ViIDt~Gr~~~~-~~~l~el~----~~~~~~~~~~~~LVl~ 193 (270)
T PRK06731 136 --------------VRDEAAMTRALTYFK---EEARVDYILIDTAGKNYRA-SETVEEMI----ETMGQVEPDYICLTLS 193 (270)
T ss_pred --------------cCCHHHHHHHHHHHH---hcCCCCEEEEECCCCCcCC-HHHHHHHH----HHHhhhCCCeEEEEEc
Confidence 123443322222111 1134789999998664422 22333332 2222333444577799
Q ss_pred ccCCChHHHHHHHh
Q 000756 668 ATLPNYEDVALFLR 681 (1300)
Q Consensus 668 ATlpn~~dva~~L~ 681 (1300)
||. ...+...++.
T Consensus 194 a~~-~~~d~~~~~~ 206 (270)
T PRK06731 194 ASM-KSKDMIEIIT 206 (270)
T ss_pred Ccc-CHHHHHHHHH
Confidence 995 4456655554
No 329
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=90.97 E-value=2.1 Score=45.27 Aligned_cols=21 Identities=43% Similarity=0.474 Sum_probs=16.5
Q ss_pred eEEEEccCCCccHHHHHHHHH
Q 000756 513 NILLCAPTGAGKTNVAVLTIL 533 (1300)
Q Consensus 513 nvLi~APTGsGKT~va~l~il 533 (1300)
.+++.||+|+|||+.+...+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 368899999999998755443
No 330
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=90.96 E-value=2.7 Score=49.29 Aligned_cols=44 Identities=9% Similarity=0.088 Sum_probs=29.6
Q ss_pred cccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEEccc
Q 000756 619 TYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (1300)
Q Consensus 619 ~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LSAT 669 (1300)
......+++|||+||.|... .-..+++.++..++...+|++|..
T Consensus 103 ~~~g~~KV~iI~~a~~m~~~-------AaNaLLKtLEEPp~~~~fiL~t~~ 146 (325)
T PRK06871 103 AQQGGNKVVYIQGAERLTEA-------AANALLKTLEEPRPNTYFLLQADL 146 (325)
T ss_pred cccCCceEEEEechhhhCHH-------HHHHHHHHhcCCCCCeEEEEEECC
Confidence 44567899999999998632 123355666776777766666544
No 331
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=90.91 E-value=0.91 Score=55.48 Aligned_cols=145 Identities=15% Similarity=0.210 Sum_probs=72.3
Q ss_pred HcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcccCCcEEEEE-eC
Q 000756 508 LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVREL-SG 586 (1300)
Q Consensus 508 l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~~gi~V~~l-tG 586 (1300)
+..++-++|.|+||+|||..++-.+.+..... +..++|+.. -.-..|+..++-.... |+....+ .|
T Consensus 191 ~~~g~liviag~pg~GKT~~al~ia~~~a~~~----------g~~v~~fSl-Em~~~~l~~Rl~~~~~--~v~~~~~~~~ 257 (421)
T TIGR03600 191 LVKGDLIVIGARPSMGKTTLALNIAENVALRE----------GKPVLFFSL-EMSAEQLGERLLASKS--GINTGNIRTG 257 (421)
T ss_pred CCCCceEEEEeCCCCCHHHHHHHHHHHHHHhC----------CCcEEEEEC-CCCHHHHHHHHHHHHc--CCCHHHHhcC
Confidence 34567789999999999998876665554222 235777752 2223444444332211 2222111 22
Q ss_pred CCccch--------hhhccceEEEECcch--HHHHH---hhcCCCcccccccEEEEeccccccc----CChhHHHHHHHH
Q 000756 587 DQTLTR--------QQIEETQIIVTTPEK--WDIIT---RKSGDRTYTQLVKLLIIDEIHLLHD----NRGPVLESIVAR 649 (1300)
Q Consensus 587 d~~~~~--------~~~~~~~IIV~TPek--ld~l~---r~~~~~~~l~~v~liIiDEaH~l~d----~rg~~le~iv~r 649 (1300)
...... ..+.+..+.|.-+.. ++.+. |+... ....+++||||=+|++.. .+...+..+...
T Consensus 258 ~l~~~~~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~--~~~~~~lvvIDyLql~~~~~~~~~~~~~~~i~~~ 335 (421)
T TIGR03600 258 RFNDSDFNRLLNAVDRLSEKDLYIDDTGGLTVAQIRSIARRIKR--KKGGLDLIVVDYIQLMAPTRGRDRNEELGGISRG 335 (421)
T ss_pred CCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH--hcCCCCEEEEecccccCCCCCCCHHHHHHHHHHH
Confidence 221111 112234555543322 33332 22211 112589999999999864 233333344333
Q ss_pred HHHHHhhccCCeeEEEEccc
Q 000756 650 TVRQIETTKEHIRLVGLSAT 669 (1300)
Q Consensus 650 l~~~~~~~~~~~riV~LSAT 669 (1300)
+ +.+.. .-++.+|++|-.
T Consensus 336 L-k~lAk-e~~i~Vi~lsQl 353 (421)
T TIGR03600 336 L-KALAK-ELDVPVVLLAQL 353 (421)
T ss_pred H-HHHHH-HhCCcEEEeccc
Confidence 3 32222 346778888765
No 332
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=90.89 E-value=1.4 Score=52.29 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=26.1
Q ss_pred ccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEEc
Q 000756 620 YTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (1300)
Q Consensus 620 ~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LS 667 (1300)
.....+++||||+|.|... .... +++.++..+....+|++|
T Consensus 138 ~~g~~rVviIDeAd~l~~~---aana----LLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 138 GDGNWRIVIIDPADDMNRN---AANA----ILKTLEEPPARALFILIS 178 (351)
T ss_pred ccCCceEEEEEchhhcCHH---HHHH----HHHHHhcCCCCceEEEEE
Confidence 3456789999999998632 2222 344456655566666665
No 333
>PRK09354 recA recombinase A; Provisional
Probab=90.88 E-value=0.59 Score=54.92 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=34.0
Q ss_pred CCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHH
Q 000756 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAE 565 (1300)
Q Consensus 511 ~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q 565 (1300)
+.-+.|++|+|||||+.++..+.+.... +.+++||..-.++-.+
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~-----------G~~~~yId~E~s~~~~ 103 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKA-----------GGTAAFIDAEHALDPV 103 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc-----------CCcEEEECCccchHHH
Confidence 4568899999999999998887766543 3468999887776654
No 334
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=90.85 E-value=0.48 Score=55.25 Aligned_cols=44 Identities=23% Similarity=0.324 Sum_probs=33.2
Q ss_pred CCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHH
Q 000756 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAE 565 (1300)
Q Consensus 511 ~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q 565 (1300)
+.-+.|++|+|||||+.++..+.+.... +.+++||.+--++-.+
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~-----------g~~~vyId~E~~~~~~ 98 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKL-----------GGTVAFIDAEHALDPV 98 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc-----------CCCEEEECccccHHHH
Confidence 4568899999999999988777665543 3368999887666554
No 335
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=90.83 E-value=1.1 Score=55.02 Aligned_cols=143 Identities=15% Similarity=0.211 Sum_probs=70.7
Q ss_pred cCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcccCCcEEEE-EeCC
Q 000756 509 SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRE-LSGD 587 (1300)
Q Consensus 509 ~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~~gi~V~~-ltGd 587 (1300)
..++-++|.|+||+|||..++-.+.+....+ +..++|++.- .-..++..++..... ++.... ..|.
T Consensus 193 ~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~----------g~~vl~~SlE-m~~~~i~~R~~~~~~--~v~~~~~~~g~ 259 (434)
T TIGR00665 193 QPSDLIILAARPSMGKTAFALNIAENAAIKE----------GKPVAFFSLE-MSAEQLAMRMLSSES--RVDSQKLRTGK 259 (434)
T ss_pred CCCeEEEEEeCCCCChHHHHHHHHHHHHHhC----------CCeEEEEeCc-CCHHHHHHHHHHHhc--CCCHHHhccCC
Confidence 4467789999999999998776666554432 2356666432 234455554433322 222111 1232
Q ss_pred Cccch--------hhhccceEEE-ECcch-HHHH---HhhcCCCcccccccEEEEecccccccC-----ChhHHHHHHHH
Q 000756 588 QTLTR--------QQIEETQIIV-TTPEK-WDII---TRKSGDRTYTQLVKLLIIDEIHLLHDN-----RGPVLESIVAR 649 (1300)
Q Consensus 588 ~~~~~--------~~~~~~~IIV-~TPek-ld~l---~r~~~~~~~l~~v~liIiDEaH~l~d~-----rg~~le~iv~r 649 (1300)
..... ..+.+..+.| .+|.. ++.+ .|+... -..+++||||=++.+... +...+..+...
T Consensus 260 l~~~~~~~~~~a~~~l~~~~l~i~d~~~~~~~~i~~~i~~~~~---~~~~~~vvID~l~~i~~~~~~~~r~~~i~~i~~~ 336 (434)
T TIGR00665 260 LSDEDWEKLTSAAGKLSEAPLYIDDTPGLTITELRAKARRLKR---EHGLGLIVIDYLQLMSGSGRSENRQQEVSEISRS 336 (434)
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH---hcCCCEEEEcchHhcCCCCCCCCHHHHHHHHHHH
Confidence 21110 1122334444 34431 3222 222211 124799999999988532 22223344333
Q ss_pred HHHHHhhccCCeeEEEEccc
Q 000756 650 TVRQIETTKEHIRLVGLSAT 669 (1300)
Q Consensus 650 l~~~~~~~~~~~riV~LSAT 669 (1300)
+..... .-++.+|++|-.
T Consensus 337 Lk~lA~--e~~i~vi~lsql 354 (434)
T TIGR00665 337 LKALAK--ELNVPVIALSQL 354 (434)
T ss_pred HHHHHH--HhCCeEEEEecc
Confidence 322221 346777777755
No 336
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.77 E-value=1.2 Score=56.67 Aligned_cols=42 Identities=19% Similarity=0.336 Sum_probs=27.2
Q ss_pred cccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEEc
Q 000756 619 TYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (1300)
Q Consensus 619 ~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LS 667 (1300)
.++...+++||||+|.+... .. ..+++.++..+....+|+++
T Consensus 123 P~~~~~KVvIIdEad~Lt~~---a~----naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 123 PQKGRYRVYIIDEVHMLSTA---AF----NAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred hhcCCCEEEEEeChhhcCHH---HH----HHHHHHHhCCCCCeEEEEEe
Confidence 45667899999999998631 22 23445556655566666655
No 337
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=90.68 E-value=1.9 Score=45.26 Aligned_cols=53 Identities=17% Similarity=0.181 Sum_probs=33.8
Q ss_pred HHhhcCCCcccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEEcccC
Q 000756 611 ITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670 (1300)
Q Consensus 611 l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LSATl 670 (1300)
+.............+++||||||.|... ....+++.++..+...++|++|...
T Consensus 90 i~~~~~~~~~~~~~KviiI~~ad~l~~~-------a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 90 IIEFLSLSPSEGKYKVIIIDEADKLTEE-------AQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp HHHHCTSS-TTSSSEEEEEETGGGS-HH-------HHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred HHHHHHHHHhcCCceEEEeehHhhhhHH-------HHHHHHHHhcCCCCCEEEEEEECCh
Confidence 3333333344467899999999998632 2334566678888888888887653
No 338
>PRK04195 replication factor C large subunit; Provisional
Probab=90.66 E-value=1.7 Score=54.07 Aligned_cols=20 Identities=40% Similarity=0.654 Sum_probs=16.8
Q ss_pred CCeEEEEccCCCccHHHHHH
Q 000756 511 ADNILLCAPTGAGKTNVAVL 530 (1300)
Q Consensus 511 ~~nvLi~APTGsGKT~va~l 530 (1300)
...+|+.||+|+|||..+..
T Consensus 39 ~~~lLL~GppG~GKTtla~a 58 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHA 58 (482)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 35799999999999987743
No 339
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.57 E-value=0.71 Score=53.84 Aligned_cols=58 Identities=21% Similarity=0.340 Sum_probs=44.5
Q ss_pred CCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHH
Q 000756 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (1300)
Q Consensus 493 ~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaL 562 (1300)
+..+.+.|..-+..++..+.++++|+|||||||+. +.+++..+-. ..|++.+--+.++
T Consensus 125 ~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~Ip~-----------~~rivtIEdt~E~ 182 (312)
T COG0630 125 YGTISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFIPP-----------EERIVTIEDTPEL 182 (312)
T ss_pred cCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhCCc-----------hhcEEEEeccccc
Confidence 67889999999999999999999999999999984 3444444322 3478877666554
No 340
>PRK13342 recombination factor protein RarA; Reviewed
Probab=90.57 E-value=0.94 Score=55.17 Aligned_cols=27 Identities=26% Similarity=0.609 Sum_probs=19.5
Q ss_pred HHHHHcCC--CeEEEEccCCCccHHHHHH
Q 000756 504 YKSALSSA--DNILLCAPTGAGKTNVAVL 530 (1300)
Q Consensus 504 i~~~l~~~--~nvLi~APTGsGKT~va~l 530 (1300)
+..++.++ .++++.||+|+|||+++..
T Consensus 27 L~~~i~~~~~~~ilL~GppGtGKTtLA~~ 55 (413)
T PRK13342 27 LRRMIEAGRLSSMILWGPPGTGKTTLARI 55 (413)
T ss_pred HHHHHHcCCCceEEEECCCCCCHHHHHHH
Confidence 33444433 3799999999999988754
No 341
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=90.56 E-value=0.94 Score=59.63 Aligned_cols=165 Identities=17% Similarity=0.213 Sum_probs=94.4
Q ss_pred cCCCeEEEEccCCCccHHHHHHHHHHHHHhccCC-------CCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcccCCcEE
Q 000756 509 SSADNILLCAPTGAGKTNVAVLTILQQLALNRND-------DGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKV 581 (1300)
Q Consensus 509 ~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~-------~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~~gi~V 581 (1300)
..++.+++.-.-|.|||..-....+......... .|.-....+-.|+|+|. ++..|+..++.+.... +++|
T Consensus 372 ~~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~-~lKv 449 (1394)
T KOG0298|consen 372 KHGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISS-LLKV 449 (1394)
T ss_pred cCCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccc-cceE
Confidence 3445567777889999987766655443221110 01111223458999998 6678999998876654 4788
Q ss_pred EEEeCCCc---cchhhhccceEEEECcchH--HHH-HhhcC-------------CCccccccc--EEEEecccccccCCh
Q 000756 582 RELSGDQT---LTRQQIEETQIIVTTPEKW--DII-TRKSG-------------DRTYTQLVK--LLIIDEIHLLHDNRG 640 (1300)
Q Consensus 582 ~~ltGd~~---~~~~~~~~~~IIV~TPekl--d~l-~r~~~-------------~~~~l~~v~--liIiDEaH~l~d~rg 640 (1300)
..+.|-.. ....++.+++||+||+.-+ ++. ++..+ -.+.+-.|. -||+|||+++-..
T Consensus 450 ~~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvess-- 527 (1394)
T KOG0298|consen 450 LLYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESS-- 527 (1394)
T ss_pred EEEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcch--
Confidence 88888432 2335677899999999865 111 11011 011111222 2899999997542
Q ss_pred hHHHHHHHHHHHHHhhccCCeeEEEEccc----CCChHHHHHHHhccc
Q 000756 641 PVLESIVARTVRQIETTKEHIRLVGLSAT----LPNYEDVALFLRVNL 684 (1300)
Q Consensus 641 ~~le~iv~rl~~~~~~~~~~~riV~LSAT----lpn~~dva~~L~~~~ 684 (1300)
.+..+++.+.+ ..+-.=++|.| +.+.--+-.||+..|
T Consensus 528 ---sS~~a~M~~rL----~~in~W~VTGTPiq~Iddl~~Ll~fLk~~P 568 (1394)
T KOG0298|consen 528 ---SSAAAEMVRRL----HAINRWCVTGTPIQKIDDLFPLLEFLKLPP 568 (1394)
T ss_pred ---HHHHHHHHHHh----hhhceeeecCCchhhhhhhHHHHHHhcCCC
Confidence 12233333322 23445788999 433334455665543
No 342
>PRK05636 replicative DNA helicase; Provisional
Probab=90.45 E-value=0.81 Score=56.91 Aligned_cols=144 Identities=17% Similarity=0.284 Sum_probs=69.9
Q ss_pred HcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcccCCcEEEEE-eC
Q 000756 508 LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVREL-SG 586 (1300)
Q Consensus 508 l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~~gi~V~~l-tG 586 (1300)
+..++-++|.|.||+|||..++-.+......+ +..++|.. +-.-..|+..++-.... ++....+ .|
T Consensus 262 l~~G~Liiiaarpg~GKT~~al~~a~~~a~~~----------g~~v~~fS-lEMs~~ql~~R~ls~~s--~v~~~~i~~g 328 (505)
T PRK05636 262 LRGGQMIIVAARPGVGKSTLALDFMRSASIKH----------NKASVIFS-LEMSKSEIVMRLLSAEA--EVRLSDMRGG 328 (505)
T ss_pred CCCCceEEEEeCCCCCHHHHHHHHHHHHHHhC----------CCeEEEEE-eeCCHHHHHHHHHHHhc--CCCHHHHhcC
Confidence 34567778999999999998775554443332 23465552 22223344444322211 1211111 22
Q ss_pred CCccch--------hhhccceEEEE-Ccch-HHHH---HhhcCCCcccccccEEEEecccccccC-----ChhHHHHHHH
Q 000756 587 DQTLTR--------QQIEETQIIVT-TPEK-WDII---TRKSGDRTYTQLVKLLIIDEIHLLHDN-----RGPVLESIVA 648 (1300)
Q Consensus 587 d~~~~~--------~~~~~~~IIV~-TPek-ld~l---~r~~~~~~~l~~v~liIiDEaH~l~d~-----rg~~le~iv~ 648 (1300)
..+... ..+.+..+.|. +|.- ++.+ .|+.. .-..+++||||=+|+|... |...+..+..
T Consensus 329 ~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~---~~~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr 405 (505)
T PRK05636 329 KMDEDAWEKLVQRLGKIAQAPIFIDDSANLTMMEIRSKARRLK---QKHDLKLIVVDYLQLMSSGKRVESRQQEVSEFSR 405 (505)
T ss_pred CCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH---HhcCCCEEEEcchHhcCCCCCCCcHHHHHHHHHH
Confidence 211111 11234455553 4432 3333 23322 1235899999999999642 2223333433
Q ss_pred HHHHHHhhccCCeeEEEEccc
Q 000756 649 RTVRQIETTKEHIRLVGLSAT 669 (1300)
Q Consensus 649 rl~~~~~~~~~~~riV~LSAT 669 (1300)
++ +.+.. .-++.||++|--
T Consensus 406 ~L-K~lAk-el~ipVi~lsQL 424 (505)
T PRK05636 406 QL-KLLAK-ELDVPLIAISQL 424 (505)
T ss_pred HH-HHHHH-HhCCeEEEEeec
Confidence 33 22222 346778888743
No 343
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.39 E-value=1.3 Score=56.27 Aligned_cols=20 Identities=35% Similarity=0.557 Sum_probs=16.6
Q ss_pred eEEEEccCCCccHHHHHHHH
Q 000756 513 NILLCAPTGAGKTNVAVLTI 532 (1300)
Q Consensus 513 nvLi~APTGsGKT~va~l~i 532 (1300)
.+|++||.|+|||.++...+
T Consensus 40 a~Lf~Gp~G~GKTtlA~~lA 59 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARILA 59 (585)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46999999999999886554
No 344
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=90.38 E-value=0.33 Score=57.12 Aligned_cols=51 Identities=20% Similarity=0.318 Sum_probs=34.4
Q ss_pred HHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHH
Q 000756 500 QSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (1300)
Q Consensus 500 Q~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaL 562 (1300)
....+..+.....|++||||||||||+.. -+++..+.. .-+++.+--+.+|
T Consensus 149 ~~~~L~~~v~~~~nili~G~tgSGKTTll-~aL~~~ip~-----------~~ri~tiEd~~El 199 (332)
T PRK13900 149 IKEFLEHAVISKKNIIISGGTSTGKTTFT-NAALREIPA-----------IERLITVEDAREI 199 (332)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHH-HHHHhhCCC-----------CCeEEEecCCCcc
Confidence 34556667778899999999999999854 344444321 2367776555554
No 345
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=90.36 E-value=1.1 Score=51.69 Aligned_cols=54 Identities=20% Similarity=0.230 Sum_probs=31.1
Q ss_pred CCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEE--cCcHHHHHHHHHHHhhh
Q 000756 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYV--APMKALVAEVVGNLSNR 573 (1300)
Q Consensus 511 ~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~i--aP~kaLa~q~~~~~~~~ 573 (1300)
...++++||||+|||+.+...+......+. +.+|.+| =|.+.-+.++...|.+.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g---------~~~V~li~~D~~r~~a~eql~~~~~~ 249 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHG---------NKKVALITTDTYRIGAVEQLKTYAKI 249 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcC---------CCeEEEEECCccchhHHHHHHHHHHH
Confidence 457899999999999877544443333210 1233333 34455555665566543
No 346
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=90.33 E-value=0.27 Score=56.11 Aligned_cols=54 Identities=28% Similarity=0.458 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHH
Q 000756 498 RVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (1300)
Q Consensus 498 ~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaL 562 (1300)
+...+.+..++..+.|++++||||||||+.. -+++..+... ..+++++-...++
T Consensus 114 ~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l-~all~~i~~~----------~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 114 EEIAEFLRSAVRGRGNILISGPTGSGKTTLL-NALLEEIPPE----------DERIVTIEDPPEL 167 (270)
T ss_dssp HHHHHHHHHCHHTTEEEEEEESTTSSHHHHH-HHHHHHCHTT----------TSEEEEEESSS-S
T ss_pred HHHHHHHhhccccceEEEEECCCccccchHH-HHHhhhcccc----------ccceEEeccccce
Confidence 4455556666667889999999999999865 4445544332 2478877766554
No 347
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=90.17 E-value=1.2 Score=57.10 Aligned_cols=42 Identities=21% Similarity=0.423 Sum_probs=27.2
Q ss_pred cccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEEc
Q 000756 619 TYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (1300)
Q Consensus 619 ~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LS 667 (1300)
++....+++||||||.|.. ... ..+++.++..+..+.+|+.+
T Consensus 114 P~~g~~KV~IIDEa~~LT~---~A~----NALLKtLEEPP~~tifILaT 155 (725)
T PRK07133 114 PTQSKYKIYIIDEVHMLSK---SAF----NALLKTLEEPPKHVIFILAT 155 (725)
T ss_pred hhcCCCEEEEEEChhhCCH---HHH----HHHHHHhhcCCCceEEEEEc
Confidence 4556789999999999863 222 33455556655566666554
No 348
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=90.16 E-value=1.4 Score=50.04 Aligned_cols=37 Identities=14% Similarity=0.152 Sum_probs=28.0
Q ss_pred CCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcC
Q 000756 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (1300)
Q Consensus 511 ~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP 558 (1300)
+.-++|+||+|+|||..++..+.+.+.+ +.+++|+.-
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~-----------Ge~vlyis~ 72 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASR-----------GNPVLFVTV 72 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhC-----------CCcEEEEEe
Confidence 4578999999999999888777665543 236888873
No 349
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.09 E-value=1.6 Score=55.71 Aligned_cols=41 Identities=20% Similarity=0.312 Sum_probs=25.7
Q ss_pred ccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEEc
Q 000756 620 YTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (1300)
Q Consensus 620 ~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LS 667 (1300)
.....+++||||+|.|... .. ..+++.++..+..+.+|+.+
T Consensus 118 ~~~~~KViIIDEad~Lt~~---a~----naLLK~LEePp~~tvfIL~t 158 (620)
T PRK14948 118 VQARWKVYVIDECHMLSTA---AF----NALLKTLEEPPPRVVFVLAT 158 (620)
T ss_pred hcCCceEEEEECccccCHH---HH----HHHHHHHhcCCcCeEEEEEe
Confidence 4456799999999998632 22 33455556555555555543
No 350
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=90.04 E-value=2.2 Score=54.50 Aligned_cols=194 Identities=15% Similarity=0.227 Sum_probs=0.0
Q ss_pred CCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcccC----CcEEEEEeCCCccchh---
Q 000756 521 GAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMY----DVKVRELSGDQTLTRQ--- 593 (1300)
Q Consensus 521 GsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~~----gi~V~~ltGd~~~~~~--- 593 (1300)
|-|||+...-.+.-.+... ...-.++|||+|. ..+..+..+|.+++..+ .+.|..+..-.....+
T Consensus 706 GLGKTlQVvtflhTvL~c~-------klg~ktaLvV~Pl-Nt~~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~ 777 (1567)
T KOG1015|consen 706 GLGKTLQVVTFLHTVLLCD-------KLGFKTALVVCPL-NTALNWMNEFEKWMEGLEDDEKLEVSELATVKRPEERSYM 777 (1567)
T ss_pred cccceehhhHHHHHHHHhh-------ccCCceEEEEcch-HHHHHHHHHHHHhcccccccccceeehhhhccChHHHHHH
Q ss_pred ---hhccceEEEECcchHHHHHhhcCCCccc-----------ccccEEEEecccccccCChhHHHHHHHHHHHHHhhccC
Q 000756 594 ---QIEETQIIVTTPEKWDIITRKSGDRTYT-----------QLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKE 659 (1300)
Q Consensus 594 ---~~~~~~IIV~TPekld~l~r~~~~~~~l-----------~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~ 659 (1300)
+.....|.|.-++.+..|.........- ..-++||+||+|.|-.+-..+-.++.. ...
T Consensus 778 L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~--------irt 849 (1567)
T KOG1015|consen 778 LQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNS--------IRT 849 (1567)
T ss_pred HHHHHhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCCeEEecchhhhccchHHHHHHHHH--------HHh
Q ss_pred CeeEEEEcccCCC----hHHHHHHHhccccCceEEecCCcccccceeeEeeeecCchhHHHHHHHHHHHHHHHHHh
Q 000756 660 HIRLVGLSATLPN----YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVA 731 (1300)
Q Consensus 660 ~~riV~LSATlpn----~~dva~~L~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 731 (1300)
..||++....|.| |--+-.|..-+.-...-.|...|.. |++.--..-........+..-..++|+.+....
T Consensus 850 kRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~EfrNRFvN-pI~nGq~~dST~~DVr~Mk~RsHILye~LkgcV 924 (1567)
T KOG1015|consen 850 KRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKEFRNRFVN-PIQNGQCADSTMVDVRVMKKRSHILYEMLKGCV 924 (1567)
T ss_pred heeEEeecCchhhhhHHHHHHHHhcccccccCcHHHHHhhcC-ccccCccCCCcHHHHHHHHHHHHHHHHHHHHHH
No 351
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=89.94 E-value=3.4 Score=49.83 Aligned_cols=20 Identities=25% Similarity=0.404 Sum_probs=16.7
Q ss_pred eEEEEccCCCccHHHHHHHH
Q 000756 513 NILLCAPTGAGKTNVAVLTI 532 (1300)
Q Consensus 513 nvLi~APTGsGKT~va~l~i 532 (1300)
.+|+.||.|+|||..+...+
T Consensus 38 a~Lf~Gp~G~GKt~lA~~lA 57 (394)
T PRK07940 38 AWLFTGPPGSGRSVAARAFA 57 (394)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 48999999999999875543
No 352
>PRK07004 replicative DNA helicase; Provisional
Probab=89.82 E-value=1.5 Score=54.13 Aligned_cols=145 Identities=14% Similarity=0.198 Sum_probs=71.3
Q ss_pred HcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcccCCcEEEEE-eC
Q 000756 508 LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVREL-SG 586 (1300)
Q Consensus 508 l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~~gi~V~~l-tG 586 (1300)
+..++-++|.|.||+|||..++-.+.+..... +..++|... ---..|++.++-.... ++....+ .|
T Consensus 210 ~~~g~liviaarpg~GKT~~al~ia~~~a~~~----------~~~v~~fSl-EM~~~ql~~R~la~~~--~v~~~~i~~g 276 (460)
T PRK07004 210 MHGGELIIVAGRPSMGKTAFSMNIGEYVAVEY----------GLPVAVFSM-EMPGTQLAMRMLGSVG--RLDQHRMRTG 276 (460)
T ss_pred CCCCceEEEEeCCCCCccHHHHHHHHHHHHHc----------CCeEEEEeC-CCCHHHHHHHHHHhhc--CCCHHHHhcC
Confidence 34567789999999999998766555443332 224555532 2223444444422211 1111111 23
Q ss_pred CCccch--------hhhccceEEEE-Ccc----hHHHHHhhcCCCcccccccEEEEecccccccC-----ChhHHHHHHH
Q 000756 587 DQTLTR--------QQIEETQIIVT-TPE----KWDIITRKSGDRTYTQLVKLLIIDEIHLLHDN-----RGPVLESIVA 648 (1300)
Q Consensus 587 d~~~~~--------~~~~~~~IIV~-TPe----kld~l~r~~~~~~~l~~v~liIiDEaH~l~d~-----rg~~le~iv~ 648 (1300)
...... ..+.+..+.|. +|. .+....|+... ....+++||||=.+++... |...+..|..
T Consensus 277 ~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~--~~~~~~lviIDYLql~~~~~~~~~r~~ei~~Isr 354 (460)
T PRK07004 277 RLTDEDWPKLTHAVQKMSEAQLFIDETGGLNPMELRSRARRLAR--QCGKLGLIIIDYLQLMSGSSQGENRATEISEISR 354 (460)
T ss_pred CCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH--hCCCCCEEEEChhhhccCCCCCCcHHHHHHHHHH
Confidence 222111 12334556653 443 22222222211 1224789999999999631 2223444433
Q ss_pred HHHHHHhhccCCeeEEEEccc
Q 000756 649 RTVRQIETTKEHIRLVGLSAT 669 (1300)
Q Consensus 649 rl~~~~~~~~~~~riV~LSAT 669 (1300)
.+ +.+.. .-++.+|++|--
T Consensus 355 ~L-K~lAk-el~ipVi~lsQL 373 (460)
T PRK07004 355 SL-KSLAK-ELDVPVIALSQL 373 (460)
T ss_pred HH-HHHHH-HhCCeEEEEecc
Confidence 33 32222 347788888754
No 353
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=89.82 E-value=1.5 Score=56.93 Aligned_cols=20 Identities=35% Similarity=0.703 Sum_probs=16.9
Q ss_pred CeEEEEccCCCccHHHHHHH
Q 000756 512 DNILLCAPTGAGKTNVAVLT 531 (1300)
Q Consensus 512 ~nvLi~APTGsGKT~va~l~ 531 (1300)
.+++++||+|+|||+.+...
T Consensus 53 ~slLL~GPpGtGKTTLA~aI 72 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARII 72 (725)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 47999999999999987543
No 354
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=89.75 E-value=0.73 Score=56.37 Aligned_cols=17 Identities=53% Similarity=1.024 Sum_probs=15.1
Q ss_pred CeEEEEccCCCccHHHH
Q 000756 512 DNILLCAPTGAGKTNVA 528 (1300)
Q Consensus 512 ~nvLi~APTGsGKT~va 528 (1300)
.-+|+|||+|||||+.|
T Consensus 546 sGvLL~GPPGCGKTLlA 562 (802)
T KOG0733|consen 546 SGVLLCGPPGCGKTLLA 562 (802)
T ss_pred CceEEeCCCCccHHHHH
Confidence 35999999999999976
No 355
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=89.62 E-value=2.4 Score=55.27 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=19.4
Q ss_pred CCCeEEEEccCCCccHHHHHHHHH
Q 000756 510 SADNILLCAPTGAGKTNVAVLTIL 533 (1300)
Q Consensus 510 ~~~nvLi~APTGsGKT~va~l~il 533 (1300)
...|+|+.||+|+|||.++.....
T Consensus 206 ~~~n~LLvGppGvGKT~lae~la~ 229 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHH
Confidence 356899999999999998765543
No 356
>CHL00095 clpC Clp protease ATP binding subunit
Probab=89.55 E-value=1.1 Score=59.48 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=19.9
Q ss_pred CCCeEEEEccCCCccHHHHHHHHHH
Q 000756 510 SADNILLCAPTGAGKTNVAVLTILQ 534 (1300)
Q Consensus 510 ~~~nvLi~APTGsGKT~va~l~il~ 534 (1300)
...|+++.||+|+|||.++...+.+
T Consensus 199 ~~~n~lL~G~pGvGKTal~~~la~~ 223 (821)
T CHL00095 199 TKNNPILIGEPGVGKTAIAEGLAQR 223 (821)
T ss_pred ccCCeEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999988655443
No 357
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=89.45 E-value=1.5 Score=57.33 Aligned_cols=25 Identities=36% Similarity=0.408 Sum_probs=19.8
Q ss_pred CCeEEEEccCCCccHHHHHHHHHHH
Q 000756 511 ADNILLCAPTGAGKTNVAVLTILQQ 535 (1300)
Q Consensus 511 ~~nvLi~APTGsGKT~va~l~il~~ 535 (1300)
..|+|+.||+|+|||.++...+.+.
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999876554443
No 358
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=89.44 E-value=0.2 Score=48.22 Aligned_cols=64 Identities=13% Similarity=-0.017 Sum_probs=41.0
Q ss_pred HHHHHHHCCCccccccCCceeeccccccccccccccccHHHHHhhcCCCCChHHHHHHhcCCcccccCcCC
Q 000756 975 AATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVR 1045 (1300)
Q Consensus 975 a~~~L~~~~~i~~~~~~~~~~~T~lG~ias~~yi~~~T~~~~~~~l~~~~~~~~il~ils~s~EF~~i~vR 1045 (1300)
|+..|...|+|+.+ -.+|++|+.++.++++|.-.+++.......+. .+++.+.|.-++ .++.++
T Consensus 2 A~~~L~~Lgald~~-----~~lT~lG~~~~~lPl~p~~a~~Ll~~~~~~~~-~~~~~iaa~ls~-~~~f~~ 65 (102)
T PF04408_consen 2 ALELLKSLGALDEN-----GNLTPLGRKMSQLPLDPRLAKMLLYGIQFGCL-DEALIIAAILSV-RSPFIN 65 (102)
T ss_dssp HHHHHHHTTSB-TT-----S-B-HHHHHHTTSSS-HHHHHHHHHHHHCT-H-HHHHHHHHHHTS-S--B--
T ss_pred HHHHHHHCCCCCCC-----CCcCHHHHHHHHCCCchHhHhHhhhccccccH-HHHHHHHHHHcC-CCcccC
Confidence 67889999999643 27999999999999999999999877666653 444444444333 444444
No 359
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=89.35 E-value=0.73 Score=52.50 Aligned_cols=40 Identities=30% Similarity=0.515 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHc-CCCeEEEEccCCCccHHHHHHHHHHHH
Q 000756 496 LNRVQSRVYKSALS-SADNILLCAPTGAGKTNVAVLTILQQL 536 (1300)
Q Consensus 496 ln~iQ~~~i~~~l~-~~~nvLi~APTGsGKT~va~l~il~~l 536 (1300)
+.+-|.+.+..++. ....++|+||||||||+.. .+++..+
T Consensus 64 ~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i 104 (264)
T cd01129 64 LKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSEL 104 (264)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhh
Confidence 46678888877665 4567999999999999865 3344444
No 360
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=89.34 E-value=2.7 Score=49.15 Aligned_cols=31 Identities=35% Similarity=0.549 Sum_probs=19.0
Q ss_pred HHHHHHHHHcCC--CeEEE-EccCCCccHHHHHH
Q 000756 500 QSRVYKSALSSA--DNILL-CAPTGAGKTNVAVL 530 (1300)
Q Consensus 500 Q~~~i~~~l~~~--~nvLi-~APTGsGKT~va~l 530 (1300)
..+.+......+ .++++ +||+|+|||..+..
T Consensus 29 ~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~ 62 (316)
T PHA02544 29 DKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKA 62 (316)
T ss_pred HHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHH
Confidence 333444444333 24554 89999999987643
No 361
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=89.31 E-value=1.7 Score=55.50 Aligned_cols=115 Identities=17% Similarity=0.238 Sum_probs=72.5
Q ss_pred EEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcccCCcEEEEEeCCCccchh
Q 000756 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ 593 (1300)
Q Consensus 514 vLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~~gi~V~~ltGd~~~~~~ 593 (1300)
.|+.-.-|-|||......++..-.......+ .......++++|+ ++..|+...+.+...+..+.|..++| ......
T Consensus 155 gIladd~glgkt~~ti~l~l~~~~~~~~~~~--~~~~kttLivcp~-s~~~qW~~elek~~~~~~l~v~v~~g-r~kd~~ 230 (674)
T KOG1001|consen 155 GILADDMGLGKTVKTIALILKQKLKSKEEDR--QKEFKTTLIVCPT-SLLTQWKTELEKVTEEDKLSIYVYHG-RTKDKS 230 (674)
T ss_pred ceEeeccccchHHHHHHHHHhcccCCcchhh--ccccCceeEecch-HHHHHHHHHHhccCCccceEEEEecc-cccccc
Confidence 4677788999999876655543222210000 0123356788887 66778888884444454677888888 444555
Q ss_pred hhccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccC
Q 000756 594 QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDN 638 (1300)
Q Consensus 594 ~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~ 638 (1300)
.+...+|+++||..|.. .+. .--..-.||+||+|.+...
T Consensus 231 el~~~dVVltTy~il~~---~~l---~~i~w~Riildea~~ikn~ 269 (674)
T KOG1001|consen 231 ELNSYDVVLTTYDILKN---SPL---VKIKWLRIVLDEAHTIKNK 269 (674)
T ss_pred hhcCCceEEeeHHHhhc---ccc---cceeEEEEEeccccccCCc
Confidence 67788999999986542 111 1112346999999998653
No 362
>PRK05595 replicative DNA helicase; Provisional
Probab=89.30 E-value=1.1 Score=55.00 Aligned_cols=144 Identities=15% Similarity=0.193 Sum_probs=71.7
Q ss_pred HcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcccCCcEEEEE-eC
Q 000756 508 LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVREL-SG 586 (1300)
Q Consensus 508 l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~~gi~V~~l-tG 586 (1300)
+..++-++|.|+||.|||..++-.+.+....+ +.+|+|+..- .-..|+..++-.... ++....+ .|
T Consensus 198 ~~~g~liviaarpg~GKT~~al~ia~~~a~~~----------g~~vl~fSlE-ms~~~l~~R~~a~~~--~v~~~~~~~~ 264 (444)
T PRK05595 198 FQKGDMILIAARPSMGKTTFALNIAEYAALRE----------GKSVAIFSLE-MSKEQLAYKLLCSEA--NVDMLRLRTG 264 (444)
T ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHHHHc----------CCcEEEEecC-CCHHHHHHHHHHHhc--CCCHHHHhcC
Confidence 34567788999999999998776655433222 2356666442 234455544433222 2222211 22
Q ss_pred CCccch--------hhhccceEEEE-Ccch-HHHH---HhhcCCCcccccccEEEEecccccccCC-----hhHHHHHHH
Q 000756 587 DQTLTR--------QQIEETQIIVT-TPEK-WDII---TRKSGDRTYTQLVKLLIIDEIHLLHDNR-----GPVLESIVA 648 (1300)
Q Consensus 587 d~~~~~--------~~~~~~~IIV~-TPek-ld~l---~r~~~~~~~l~~v~liIiDEaH~l~d~r-----g~~le~iv~ 648 (1300)
...... ..+....+.|- +|+. ++.+ .|+.. .-..+++||||=+|++...+ ...+..+..
T Consensus 265 ~l~~~e~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~---~~~~~~~vvIDylql~~~~~~~~~r~~~v~~is~ 341 (444)
T PRK05595 265 NLEDKDWENIARASGPLAAAKIFIDDTAGVSVMEMRSKCRRLK---IEHGIDMILIDYLQLMSGGKGSESRQQEVSEISR 341 (444)
T ss_pred CCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH---HhcCCCEEEEeHHHhccCCCCCccHHHHHHHHHH
Confidence 211110 01223445553 3332 2222 23221 11348999999999996422 223333333
Q ss_pred HHHHHHhhccCCeeEEEEccc
Q 000756 649 RTVRQIETTKEHIRLVGLSAT 669 (1300)
Q Consensus 649 rl~~~~~~~~~~~riV~LSAT 669 (1300)
. ++.+.. .-++.+|++|-.
T Consensus 342 ~-LK~lAk-e~~i~vi~lsQL 360 (444)
T PRK05595 342 S-IKALAK-EMECPVIALSQL 360 (444)
T ss_pred H-HHHHHH-HhCCeEEEeecc
Confidence 3 333322 347788888765
No 363
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=89.22 E-value=0.88 Score=50.31 Aligned_cols=45 Identities=18% Similarity=0.211 Sum_probs=29.9
Q ss_pred CCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcH
Q 000756 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMK 560 (1300)
Q Consensus 511 ~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~k 560 (1300)
++-+.|.||+|+|||..++..+......... + ..+.+++|+..-.
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~--~---g~~~~v~yi~~e~ 63 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGEL--G---GLEGKVVYIDTEG 63 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhccccc--C---CCcceEEEEecCC
Confidence 5678999999999999887666554432100 0 0135788887654
No 364
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.02 E-value=2.5 Score=54.01 Aligned_cols=42 Identities=19% Similarity=0.282 Sum_probs=27.2
Q ss_pred cccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEEc
Q 000756 619 TYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (1300)
Q Consensus 619 ~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LS 667 (1300)
.++...+++||||+|.|... . ...+++.++..+....+|+.+
T Consensus 117 P~~~~~KVvIIdea~~Ls~~---a----~naLLK~LEepp~~tifIL~t 158 (614)
T PRK14971 117 PQIGKYKIYIIDEVHMLSQA---A----FNAFLKTLEEPPSYAIFILAT 158 (614)
T ss_pred cccCCcEEEEEECcccCCHH---H----HHHHHHHHhCCCCCeEEEEEe
Confidence 45677899999999998632 1 233445556655566666544
No 365
>PF05729 NACHT: NACHT domain
Probab=88.90 E-value=2.5 Score=43.74 Aligned_cols=53 Identities=21% Similarity=0.325 Sum_probs=29.5
Q ss_pred EEEEecccccccCChh----HHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHh
Q 000756 626 LLIIDEIHLLHDNRGP----VLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLR 681 (1300)
Q Consensus 626 liIiDEaH~l~d~rg~----~le~iv~rl~~~~~~~~~~~riV~LSATlpn~~dva~~L~ 681 (1300)
++|||=++.+....+. .+..++..++.. ...+..+++..|.+ .+..++..++.
T Consensus 84 llilDglDE~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~liit~r~-~~~~~~~~~~~ 140 (166)
T PF05729_consen 84 LLILDGLDELEEQDQSQERQRLLDLLSQLLPQ--ALPPGVKLIITSRP-RAFPDLRRRLK 140 (166)
T ss_pred EEEEechHhcccchhhhHHHHHHHHHHHHhhh--ccCCCCeEEEEEcC-ChHHHHHHhcC
Confidence 4999999998763322 233334433321 23567887776665 33444555554
No 366
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=88.89 E-value=3.9 Score=48.86 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=17.9
Q ss_pred eEEEEccCCCccHHHHHHHHHHH
Q 000756 513 NILLCAPTGAGKTNVAVLTILQQ 535 (1300)
Q Consensus 513 nvLi~APTGsGKT~va~l~il~~ 535 (1300)
-+|++||.|+||+..+...+-..
T Consensus 43 A~Lf~Gp~G~GK~~lA~~~A~~L 65 (365)
T PRK07471 43 AWLIGGPQGIGKATLAYRMARFL 65 (365)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999876544333
No 367
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=88.82 E-value=0.82 Score=51.03 Aligned_cols=50 Identities=14% Similarity=0.212 Sum_probs=33.6
Q ss_pred CCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhh
Q 000756 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (1300)
Q Consensus 511 ~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~ 572 (1300)
+..+++.||+|+|||..+...+...+.. +.+++|+.=-.. ..++.+++..
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~-----------g~~~~y~~~e~~-~~~~~~~~~~ 74 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQ-----------GKKVYVITTENT-SKSYLKQMES 74 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhC-----------CCEEEEEEcCCC-HHHHHHHHHH
Confidence 4678999999999999887776655542 346888765433 3455554433
No 368
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=88.78 E-value=2.2 Score=52.43 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=17.8
Q ss_pred eEEEEccCCCccHHHHHHHHHH
Q 000756 513 NILLCAPTGAGKTNVAVLTILQ 534 (1300)
Q Consensus 513 nvLi~APTGsGKT~va~l~il~ 534 (1300)
.+|++||.|+|||.++...+-.
T Consensus 41 a~Lf~Gp~G~GKtt~A~~lAk~ 62 (451)
T PRK06305 41 AYLFSGIRGTGKTTLARIFAKA 62 (451)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4799999999999988655433
No 369
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=88.77 E-value=0.69 Score=53.14 Aligned_cols=61 Identities=23% Similarity=0.394 Sum_probs=38.1
Q ss_pred HHHHHHHHHcCCC--eEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHh
Q 000756 500 QSRVYKSALSSAD--NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (1300)
Q Consensus 500 Q~~~i~~~l~~~~--nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~ 571 (1300)
|.-.+..+++++. .+++.+|.|+|||..|-+.+... . ....+.|=+.-|.+-++++..-|.
T Consensus 149 q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~ts-----k------~~SyrfvelSAt~a~t~dvR~ife 211 (554)
T KOG2028|consen 149 QDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTS-----K------KHSYRFVELSATNAKTNDVRDIFE 211 (554)
T ss_pred cchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhc-----C------CCceEEEEEeccccchHHHHHHHH
Confidence 3455566666654 79999999999999875543211 0 113456666666666666555443
No 370
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=88.72 E-value=1.1 Score=55.33 Aligned_cols=19 Identities=42% Similarity=0.705 Sum_probs=16.2
Q ss_pred CCeEEEEccCCCccHHHHH
Q 000756 511 ADNILLCAPTGAGKTNVAV 529 (1300)
Q Consensus 511 ~~nvLi~APTGsGKT~va~ 529 (1300)
...+|+.||+|+|||.++-
T Consensus 216 p~GILLyGPPGTGKT~LAK 234 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAK 234 (512)
T ss_pred CcceEEECCCCCcHHHHHH
Confidence 4579999999999999763
No 371
>PRK10436 hypothetical protein; Provisional
Probab=88.70 E-value=0.77 Score=56.36 Aligned_cols=41 Identities=34% Similarity=0.493 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHHc-CCCeEEEEccCCCccHHHHHHHHHHHHH
Q 000756 496 LNRVQSRVYKSALS-SADNILLCAPTGAGKTNVAVLTILQQLA 537 (1300)
Q Consensus 496 ln~iQ~~~i~~~l~-~~~nvLi~APTGsGKT~va~l~il~~l~ 537 (1300)
+.+-|.+.|..++. ....+||+||||||||+.. .+++..+.
T Consensus 202 ~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~~ 243 (462)
T PRK10436 202 MTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTLN 243 (462)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhhC
Confidence 56778888877664 4567999999999999865 34555553
No 372
>PRK08506 replicative DNA helicase; Provisional
Probab=88.65 E-value=1.3 Score=54.76 Aligned_cols=144 Identities=17% Similarity=0.276 Sum_probs=73.6
Q ss_pred HcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcccCCcEEEEE-eC
Q 000756 508 LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVREL-SG 586 (1300)
Q Consensus 508 l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~~gi~V~~l-tG 586 (1300)
+..++-++|.|+||.|||..++-.+.+.+.. +.+|+|+.. -.-+.|+..++-.... ++....+ .|
T Consensus 189 ~~~G~LivIaarpg~GKT~fal~ia~~~~~~-----------g~~V~~fSl-EMs~~ql~~Rlla~~s--~v~~~~i~~~ 254 (472)
T PRK08506 189 FNKGDLIIIAARPSMGKTTLCLNMALKALNQ-----------DKGVAFFSL-EMPAEQLMLRMLSAKT--SIPLQNLRTG 254 (472)
T ss_pred CCCCceEEEEcCCCCChHHHHHHHHHHHHhc-----------CCcEEEEeC-cCCHHHHHHHHHHHhc--CCCHHHHhcC
Confidence 3456778999999999999887776665422 234666643 2335566655543322 2222111 23
Q ss_pred CCccch--------hhhccceEEEE-Ccc----hHHHHHhhcCCCcccccccEEEEecccccccC-----ChhHHHHHHH
Q 000756 587 DQTLTR--------QQIEETQIIVT-TPE----KWDIITRKSGDRTYTQLVKLLIIDEIHLLHDN-----RGPVLESIVA 648 (1300)
Q Consensus 587 d~~~~~--------~~~~~~~IIV~-TPe----kld~l~r~~~~~~~l~~v~liIiDEaH~l~d~-----rg~~le~iv~ 648 (1300)
..+... ..+.+..+.|. +|. .+....|+... ....+++||||=++++... +...+..+.
T Consensus 255 ~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~l~~--~~~~~~lvvIDyLql~~~~~~~~~r~~ev~~is- 331 (472)
T PRK08506 255 DLDDDEWERLSDACDELSKKKLFVYDSGYVNIHQVRAQLRKLKS--QHPEIGLAVIDYLQLMSGSGNFKDRHLQISEIS- 331 (472)
T ss_pred CCCHHHHHHHHHHHHHHHcCCeEEECCCCCCHHHHHHHHHHHHH--hCCCCCEEEEcChhhccCCCCCCCHHHHHHHHH-
Confidence 322111 11233445553 333 22222333221 1135899999999998632 222333333
Q ss_pred HHHHHHhhccCCeeEEEEccc
Q 000756 649 RTVRQIETTKEHIRLVGLSAT 669 (1300)
Q Consensus 649 rl~~~~~~~~~~~riV~LSAT 669 (1300)
+-++.+.. .-++.+|++|-.
T Consensus 332 r~LK~lAk-el~ipVi~lsQL 351 (472)
T PRK08506 332 RGLKLLAR-ELDIPIIALSQL 351 (472)
T ss_pred HHHHHHHH-HhCCcEEEEeec
Confidence 33333322 347778888755
No 373
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.60 E-value=0.35 Score=56.06 Aligned_cols=65 Identities=32% Similarity=0.333 Sum_probs=36.5
Q ss_pred ccEEEEecccccccCChhHHHHHHHH-----HHHHHhh---ccCC-eeEEEEcccCCChHHHHHHHhccccCceE
Q 000756 624 VKLLIIDEIHLLHDNRGPVLESIVAR-----TVRQIET---TKEH-IRLVGLSATLPNYEDVALFLRVNLEKGLF 689 (1300)
Q Consensus 624 v~liIiDEaH~l~d~rg~~le~iv~r-----l~~~~~~---~~~~-~riV~LSATlpn~~dva~~L~~~~~~~~~ 689 (1300)
-+.|.|||++-|...||..-|.=-+| ++-++.. .... ..++.|-|| .-+-|+.+-|+...++.+|
T Consensus 305 PStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAAT-N~PWdiDEAlrRRlEKRIy 378 (491)
T KOG0738|consen 305 PSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAAT-NFPWDIDEALRRRLEKRIY 378 (491)
T ss_pred CceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEecc-CCCcchHHHHHHHHhhhee
Confidence 47899999999987666554443222 2222221 1222 345567777 2246777766655444443
No 374
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=88.57 E-value=1.8 Score=54.60 Aligned_cols=30 Identities=27% Similarity=0.424 Sum_probs=20.8
Q ss_pred HHHHHHcCC---CeEEEEccCCCccHHHHHHHH
Q 000756 503 VYKSALSSA---DNILLCAPTGAGKTNVAVLTI 532 (1300)
Q Consensus 503 ~i~~~l~~~---~nvLi~APTGsGKT~va~l~i 532 (1300)
.+..++..+ ..+|++||.|+|||.++...+
T Consensus 27 ~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lA 59 (563)
T PRK06647 27 TLKHSIESNKIANAYIFSGPRGVGKTSSARAFA 59 (563)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 344444443 247999999999999886543
No 375
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=88.56 E-value=4.8 Score=48.81 Aligned_cols=121 Identities=12% Similarity=0.166 Sum_probs=61.2
Q ss_pred CeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEc--CcHHHHHHHHHHHhhhcccCCcEEEEEeCCCc
Q 000756 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA--PMKALVAEVVGNLSNRLQMYDVKVRELSGDQT 589 (1300)
Q Consensus 512 ~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~ia--P~kaLa~q~~~~~~~~l~~~gi~V~~ltGd~~ 589 (1300)
..++++||+|+|||+.+.-.+.. +... +.++++++ |.|+-+.++.+.+.+. .++.+....+...
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~-l~~~----------G~kV~lV~~D~~R~aA~eQLk~~a~~---~~vp~~~~~~~~d 166 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYY-YQRK----------GFKPCLVCADTFRAGAFDQLKQNATK---ARIPFYGSYTESD 166 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-HHHC----------CCCEEEEcCcccchhHHHHHHHHhhc---cCCeEEeecCCCC
Confidence 35889999999998766433332 2221 23444443 4576677776666554 2444432222111
Q ss_pred cchhhhccceEEEECcchH--HHHHhhcCCCcccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEEc
Q 000756 590 LTRQQIEETQIIVTTPEKW--DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (1300)
Q Consensus 590 ~~~~~~~~~~IIV~TPekl--d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LS 667 (1300)
|... +.+.+ .. -..+++||||=+-.++. -+.++..+........+.-.++.++
T Consensus 167 ---------------p~~i~~~~l~~-~~----~~~~DvViIDTaGr~~~-----d~~lm~El~~i~~~~~p~e~lLVld 221 (429)
T TIGR01425 167 ---------------PVKIASEGVEK-FK----KENFDIIIVDTSGRHKQ-----EDSLFEEMLQVAEAIQPDNIIFVMD 221 (429)
T ss_pred ---------------HHHHHHHHHHH-HH----hCCCCEEEEECCCCCcc-----hHHHHHHHHHHhhhcCCcEEEEEec
Confidence 1110 01111 10 12467888888765432 2223333333333344555677788
Q ss_pred ccCC
Q 000756 668 ATLP 671 (1300)
Q Consensus 668 ATlp 671 (1300)
||..
T Consensus 222 a~~G 225 (429)
T TIGR01425 222 GSIG 225 (429)
T ss_pred cccC
Confidence 8865
No 376
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=88.52 E-value=2.2 Score=53.69 Aligned_cols=47 Identities=17% Similarity=0.290 Sum_probs=29.2
Q ss_pred eEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHH
Q 000756 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (1300)
Q Consensus 513 nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~ 569 (1300)
.++|+|++|+|||..+. +|.+.+.... .+.+++|+. ...++.++...
T Consensus 316 pL~LyG~sGsGKTHLL~-AIa~~a~~~~--------~g~~V~Yit-aeef~~el~~a 362 (617)
T PRK14086 316 PLFIYGESGLGKTHLLH-AIGHYARRLY--------PGTRVRYVS-SEEFTNEFINS 362 (617)
T ss_pred cEEEECCCCCCHHHHHH-HHHHHHHHhC--------CCCeEEEee-HHHHHHHHHHH
Confidence 38999999999998653 4555544321 134677765 34555555443
No 377
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=88.42 E-value=2.6 Score=50.51 Aligned_cols=44 Identities=20% Similarity=0.231 Sum_probs=26.5
Q ss_pred cccEEEEecccccccCCh--hHHHHHHHHHHHHHhhccCCeeEEEEcccCCC
Q 000756 623 LVKLLIIDEIHLLHDNRG--PVLESIVARTVRQIETTKEHIRLVGLSATLPN 672 (1300)
Q Consensus 623 ~v~liIiDEaH~l~d~rg--~~le~iv~rl~~~~~~~~~~~riV~LSATlpn 672 (1300)
++++++||.++.+....+ ..+-.++.++ .. ...++|..|...|.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l----~~--~~kqIvltsdr~P~ 220 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNAL----LE--NGKQIVLTSDRPPK 220 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHH----Hh--cCCEEEEEcCCCch
Confidence 689999999999875322 2222233332 22 23377887766664
No 378
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=88.35 E-value=2 Score=55.85 Aligned_cols=80 Identities=9% Similarity=0.129 Sum_probs=65.8
Q ss_pred CCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHH
Q 000756 732 GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQL 811 (1300)
Q Consensus 732 ~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ 811 (1300)
.+.+++|.+||+.-|...+..+....... ...++.+||+++..+|..
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~---------------------------------~i~v~ll~G~~~~~~r~~ 355 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPL---------------------------------GIRVALLTGSLKGKERRE 355 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhc---------------------------------CcEEEEEcCCCCHHHHHH
Confidence 36799999999999999988887654211 134789999999999999
Q ss_pred HHHHHhCCCccEEEecc-ccccccCCCCcEEEEe
Q 000756 812 VEDLFGDGHVQVLVSTA-TLAWGVNLPAHTVIIK 844 (1300)
Q Consensus 812 ve~~F~~g~i~VLVaT~-tla~GVdlPav~vVI~ 844 (1300)
+.....+|.+.|+|+|. .+...+.++.+.+||-
T Consensus 356 ~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 356 ILEAIASGEADIVIGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred HHHHHhCCCCCEEEchHHHhcccchhcccceEEE
Confidence 99999999999999996 4555678888888873
No 379
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.31 E-value=4.4 Score=48.56 Aligned_cols=35 Identities=26% Similarity=0.585 Sum_probs=23.3
Q ss_pred HHHHHHHHcCC---CeEEEEccCCCccHHHHHHHHHHHH
Q 000756 501 SRVYKSALSSA---DNILLCAPTGAGKTNVAVLTILQQL 536 (1300)
Q Consensus 501 ~~~i~~~l~~~---~nvLi~APTGsGKT~va~l~il~~l 536 (1300)
.+.+...+..+ .++|++||.|+|||..+... .+.+
T Consensus 26 ~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~l-a~~l 63 (367)
T PRK14970 26 TNTLLNAIENNHLAQALLFCGPRGVGKTTCARIL-ARKI 63 (367)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH-HHHh
Confidence 34444555443 36899999999999877544 4443
No 380
>PRK14873 primosome assembly protein PriA; Provisional
Probab=88.28 E-value=2.1 Score=55.00 Aligned_cols=76 Identities=17% Similarity=0.134 Sum_probs=63.4
Q ss_pred CCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHHH
Q 000756 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLV 812 (1300)
Q Consensus 733 ~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~v 812 (1300)
++++||.||....+..+...|+..... ..|+++|++++..+|...
T Consensus 188 Gk~vLvLvPEi~lt~q~~~rl~~~f~~-----------------------------------~~v~~lhS~l~~~~R~~~ 232 (665)
T PRK14873 188 GRGALVVVPDQRDVDRLEAALRALLGA-----------------------------------GDVAVLSAGLGPADRYRR 232 (665)
T ss_pred CCeEEEEecchhhHHHHHHHHHHHcCC-----------------------------------CcEEEECCCCCHHHHHHH
Confidence 789999999999999999988765420 237899999999999999
Q ss_pred HHHHhCCCccEEEeccccccccCCCCcEEEEe
Q 000756 813 EDLFGDGHVQVLVSTATLAWGVNLPAHTVIIK 844 (1300)
Q Consensus 813 e~~F~~g~i~VLVaT~tla~GVdlPav~vVI~ 844 (1300)
.....+|..+|+|.|..+ .=.-+++...||-
T Consensus 233 w~~~~~G~~~IViGtRSA-vFaP~~~LgLIIv 263 (665)
T PRK14873 233 WLAVLRGQARVVVGTRSA-VFAPVEDLGLVAI 263 (665)
T ss_pred HHHHhCCCCcEEEEccee-EEeccCCCCEEEE
Confidence 999999999999999763 4556677777764
No 381
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=88.25 E-value=0.99 Score=50.04 Aligned_cols=51 Identities=25% Similarity=0.414 Sum_probs=35.8
Q ss_pred CCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhh
Q 000756 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (1300)
Q Consensus 511 ~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~ 572 (1300)
+..++|.||+|+|||..++..+.+.+.+. +-+++|++-. +-..++.+.+..
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~----------ge~vlyvs~e-e~~~~l~~~~~s 69 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNF----------GEKVLYVSFE-EPPEELIENMKS 69 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHH----------T--EEEEESS-S-HHHHHHHHHT
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhc----------CCcEEEEEec-CCHHHHHHHHHH
Confidence 56899999999999999988888877761 1268888743 334566665553
No 382
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=88.22 E-value=1.3 Score=50.17 Aligned_cols=53 Identities=23% Similarity=0.383 Sum_probs=37.1
Q ss_pred HHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHh
Q 000756 507 ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (1300)
Q Consensus 507 ~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~ 571 (1300)
.+...+|+++.||+|+|||..+.. |.+.+... +. -|+.+++..|+.++...+.
T Consensus 101 ~~~~~~nl~l~G~~G~GKThLa~A-i~~~l~~~----------g~-sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 101 FFERGENLVLLGPPGVGKTHLAIA-IGNELLKA----------GI-SVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred HhccCCcEEEECCCCCcHHHHHHH-HHHHHHHc----------CC-eEEEEEHHHHHHHHHHHHh
Confidence 345678999999999999998754 44444442 23 4556788888888766663
No 383
>PRK06835 DNA replication protein DnaC; Validated
Probab=88.21 E-value=1.4 Score=51.69 Aligned_cols=45 Identities=24% Similarity=0.417 Sum_probs=30.0
Q ss_pred CCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHH
Q 000756 510 SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (1300)
Q Consensus 510 ~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~ 566 (1300)
...+++++||||+|||..+. +|.+.+... +..|+|+. ...|..++
T Consensus 182 ~~~~Lll~G~~GtGKThLa~-aIa~~l~~~----------g~~V~y~t-~~~l~~~l 226 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSN-CIAKELLDR----------GKSVIYRT-ADELIEIL 226 (329)
T ss_pred cCCcEEEECCCCCcHHHHHH-HHHHHHHHC----------CCeEEEEE-HHHHHHHH
Confidence 35789999999999999664 555555432 34677654 44555444
No 384
>PRK08840 replicative DNA helicase; Provisional
Probab=88.10 E-value=2.8 Score=51.70 Aligned_cols=145 Identities=14% Similarity=0.208 Sum_probs=70.6
Q ss_pred HcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcccCCcEEEEE-eC
Q 000756 508 LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVREL-SG 586 (1300)
Q Consensus 508 l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~~gi~V~~l-tG 586 (1300)
+..++-++|.|.||.|||..++-.+.+....+ +..++|...- --..|++.++-.... ++....+ .|
T Consensus 214 ~~~g~LiviaarPg~GKTafalnia~~~a~~~----------~~~v~~fSlE-Ms~~ql~~Rlla~~s--~v~~~~i~~~ 280 (464)
T PRK08840 214 LQGSDLIIVAARPSMGKTTFAMNLCENAAMDQ----------DKPVLIFSLE-MPAEQLMMRMLASLS--RVDQTKIRTG 280 (464)
T ss_pred CCCCceEEEEeCCCCchHHHHHHHHHHHHHhC----------CCeEEEEecc-CCHHHHHHHHHHhhC--CCCHHHHhcC
Confidence 45567789999999999998755544443222 2346665432 224455555433222 2211111 12
Q ss_pred CCccch--------hhh-ccceEEEE-Ccc----hHHHHHhhcCCCcccccccEEEEeccccccc-----CChhHHHHHH
Q 000756 587 DQTLTR--------QQI-EETQIIVT-TPE----KWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-----NRGPVLESIV 647 (1300)
Q Consensus 587 d~~~~~--------~~~-~~~~IIV~-TPe----kld~l~r~~~~~~~l~~v~liIiDEaH~l~d-----~rg~~le~iv 647 (1300)
..+... ..+ ....+.|. +|. .+....|+... ....+++||||=.|++.. .|...+..+.
T Consensus 281 ~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~--~~~~~~lvvIDYLql~~~~~~~~~r~~ei~~is 358 (464)
T PRK08840 281 QLDDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAR--EHGGLSMIMVDYLQLMRVPALSDNRTLEIAEIS 358 (464)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH--hcCCCCEEEEccHHhcCCCCCCCchHHHHHHHH
Confidence 111100 111 23345553 332 22222333221 112479999999999852 1223344443
Q ss_pred HHHHHHHhhccCCeeEEEEccc
Q 000756 648 ARTVRQIETTKEHIRLVGLSAT 669 (1300)
Q Consensus 648 ~rl~~~~~~~~~~~riV~LSAT 669 (1300)
.. ++.+.. .-++.||++|--
T Consensus 359 r~-LK~lAk-el~ipVi~LsQL 378 (464)
T PRK08840 359 RS-LKALAK-ELNVPVVALSQL 378 (464)
T ss_pred HH-HHHHHH-HhCCeEEEEEec
Confidence 33 333322 347788888843
No 385
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.08 E-value=1.9 Score=53.41 Aligned_cols=19 Identities=32% Similarity=0.644 Sum_probs=15.8
Q ss_pred EEEEccCCCccHHHHHHHH
Q 000756 514 ILLCAPTGAGKTNVAVLTI 532 (1300)
Q Consensus 514 vLi~APTGsGKT~va~l~i 532 (1300)
+|++||.|+|||+++.+.+
T Consensus 41 yLf~Gp~G~GKTtlAr~lA 59 (486)
T PRK14953 41 YIFAGPRGTGKTTIARILA 59 (486)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999886544
No 386
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=88.03 E-value=3.5 Score=48.93 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=17.3
Q ss_pred eEEEEccCCCccHHHHHHHHHHHH
Q 000756 513 NILLCAPTGAGKTNVAVLTILQQL 536 (1300)
Q Consensus 513 nvLi~APTGsGKT~va~l~il~~l 536 (1300)
.+|++||.|+|||..+... .+.+
T Consensus 38 ~~Ll~G~~G~GKt~~a~~l-a~~l 60 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIARIF-AKAL 60 (355)
T ss_pred EEEEECCCCCCHHHHHHHH-HHHh
Confidence 5799999999999877443 3443
No 387
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=87.89 E-value=0.86 Score=57.70 Aligned_cols=40 Identities=30% Similarity=0.439 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHHc-CCCeEEEEccCCCccHHHHHHHHHHHH
Q 000756 496 LNRVQSRVYKSALS-SADNILLCAPTGAGKTNVAVLTILQQL 536 (1300)
Q Consensus 496 ln~iQ~~~i~~~l~-~~~nvLi~APTGsGKT~va~l~il~~l 536 (1300)
+.+-|.+.+..++. ....+|++||||||||+.. .++++.+
T Consensus 300 ~~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~ 340 (564)
T TIGR02538 300 FEPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNIL 340 (564)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhh
Confidence 46777777777665 4567899999999999874 4555555
No 388
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=87.89 E-value=0.96 Score=53.92 Aligned_cols=32 Identities=38% Similarity=0.526 Sum_probs=23.1
Q ss_pred HHHcCCCeEEEEccCCCccHHHHHHHHHHHHHh
Q 000756 506 SALSSADNILLCAPTGAGKTNVAVLTILQQLAL 538 (1300)
Q Consensus 506 ~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~ 538 (1300)
.+...+..++|+||||||||+.. -++++.+..
T Consensus 144 ~l~~~~GlilI~G~TGSGKTT~l-~al~~~i~~ 175 (372)
T TIGR02525 144 SLLPAAGLGLICGETGSGKSTLA-ASIYQHCGE 175 (372)
T ss_pred HHHhcCCEEEEECCCCCCHHHHH-HHHHHHHHh
Confidence 33445668999999999999865 456666643
No 389
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=87.75 E-value=3.4 Score=45.83 Aligned_cols=38 Identities=18% Similarity=0.223 Sum_probs=27.3
Q ss_pred CCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcC
Q 000756 510 SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (1300)
Q Consensus 510 ~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP 558 (1300)
.+..++|.||+|+|||..+...+.+.+.. +.+++|+.-
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~-----------g~~~~~is~ 56 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD-----------GDPVIYVTT 56 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc-----------CCeEEEEEc
Confidence 35789999999999999887655555432 235777764
No 390
>PRK08006 replicative DNA helicase; Provisional
Probab=87.74 E-value=3.3 Score=51.18 Aligned_cols=145 Identities=17% Similarity=0.229 Sum_probs=73.5
Q ss_pred HcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcccCCcEEEEE-eC
Q 000756 508 LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVREL-SG 586 (1300)
Q Consensus 508 l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~~gi~V~~l-tG 586 (1300)
+..++-++|.|.||.|||..++-.+.+..... +..|+|...- --..|++.++-.... ++....+ .|
T Consensus 221 l~~G~LiiIaarPgmGKTafalnia~~~a~~~----------g~~V~~fSlE-M~~~ql~~Rlla~~~--~v~~~~i~~~ 287 (471)
T PRK08006 221 LQPSDLIIVAARPSMGKTTFAMNLCENAAMLQ----------DKPVLIFSLE-MPGEQIMMRMLASLS--RVDQTRIRTG 287 (471)
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhc----------CCeEEEEecc-CCHHHHHHHHHHHhc--CCCHHHhhcC
Confidence 45567788999999999998776665554332 2346555432 234555555543322 2221111 22
Q ss_pred CCccch--------hhh-ccceEEEE-C----cchHHHHHhhcCCCcccccccEEEEeccccccc-----CChhHHHHHH
Q 000756 587 DQTLTR--------QQI-EETQIIVT-T----PEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-----NRGPVLESIV 647 (1300)
Q Consensus 587 d~~~~~--------~~~-~~~~IIV~-T----Pekld~l~r~~~~~~~l~~v~liIiDEaH~l~d-----~rg~~le~iv 647 (1300)
..+... ..+ ....+.|. + +..+....|+... -...+++||||=+|++.. .|...+..|.
T Consensus 288 ~l~~~e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~--~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~is 365 (471)
T PRK08006 288 QLDDEDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFR--EHGGLSLIMIDYLQLMRVPSLSDNRTLEIAEIS 365 (471)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH--hcCCCCEEEEccHHHccCCCCCCCcHHHHHHHH
Confidence 211110 011 33445553 2 2222222333211 112579999999999863 2333344443
Q ss_pred HHHHHHHhhccCCeeEEEEccc
Q 000756 648 ARTVRQIETTKEHIRLVGLSAT 669 (1300)
Q Consensus 648 ~rl~~~~~~~~~~~riV~LSAT 669 (1300)
.. ++.+.. .-++.+|++|-.
T Consensus 366 r~-LK~lAk-el~ipVi~LsQL 385 (471)
T PRK08006 366 RS-LKALAK-ELQVPVVALSQL 385 (471)
T ss_pred HH-HHHHHH-HhCCeEEEEEec
Confidence 33 333332 347888888854
No 391
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=87.69 E-value=2.3 Score=47.14 Aligned_cols=38 Identities=21% Similarity=0.410 Sum_probs=27.9
Q ss_pred CCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCc
Q 000756 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (1300)
Q Consensus 511 ~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~ 559 (1300)
+..++++||+|+|||..++..+.+.+.. +.+++|+.--
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~-----------~~~v~yi~~e 60 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKN-----------GKKVIYIDTE 60 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC-----------CCeEEEEECC
Confidence 4678999999999999887776655533 2367877543
No 392
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=87.63 E-value=0.38 Score=54.45 Aligned_cols=19 Identities=58% Similarity=0.791 Sum_probs=16.7
Q ss_pred CCeEEEEccCCCccHHHHH
Q 000756 511 ADNILLCAPTGAGKTNVAV 529 (1300)
Q Consensus 511 ~~nvLi~APTGsGKT~va~ 529 (1300)
..|+|+.+|||||||+.|.
T Consensus 97 KSNILLiGPTGsGKTlLAq 115 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQ 115 (408)
T ss_pred eccEEEECCCCCcHHHHHH
Confidence 3589999999999999874
No 393
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=87.61 E-value=0.85 Score=56.15 Aligned_cols=43 Identities=21% Similarity=0.391 Sum_probs=26.6
Q ss_pred CCcccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEE
Q 000756 617 DRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGL 666 (1300)
Q Consensus 617 ~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~L 666 (1300)
-.+...+++..||||+|+|.-. .+ ..+++.++..++.+.+|+.
T Consensus 113 y~P~~~ryKVyiIDEvHMLS~~---af----NALLKTLEEPP~hV~FIlA 155 (515)
T COG2812 113 YAPSEGRYKVYIIDEVHMLSKQ---AF----NALLKTLEEPPSHVKFILA 155 (515)
T ss_pred cCCccccceEEEEecHHhhhHH---HH----HHHhcccccCccCeEEEEe
Confidence 3355678899999999998631 12 2344545555555555443
No 394
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=87.60 E-value=3.1 Score=44.67 Aligned_cols=42 Identities=19% Similarity=0.221 Sum_probs=34.4
Q ss_pred CCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHH
Q 000756 510 SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (1300)
Q Consensus 510 ~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaL 562 (1300)
...+++|..++|-|||.+++-..++.+.. +.+|+++.=+|.-
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~-----------G~~V~ivQFlKg~ 62 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGH-----------GKKVGVVQFIKGA 62 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHC-----------CCeEEEEEEecCC
Confidence 34689999999999999998888888765 4578888877754
No 395
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=87.57 E-value=2.5 Score=49.23 Aligned_cols=30 Identities=30% Similarity=0.483 Sum_probs=20.5
Q ss_pred HHHHHHHHcCC--CeEEEEccCCCccHHHHHH
Q 000756 501 SRVYKSALSSA--DNILLCAPTGAGKTNVAVL 530 (1300)
Q Consensus 501 ~~~i~~~l~~~--~nvLi~APTGsGKT~va~l 530 (1300)
.+.+..++..+ .+++++||+|+|||.++..
T Consensus 26 ~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~ 57 (319)
T PRK00440 26 VERLKSYVKEKNMPHLLFAGPPGTGKTTAALA 57 (319)
T ss_pred HHHHHHHHhCCCCCeEEEECCCCCCHHHHHHH
Confidence 33344444432 3699999999999987744
No 396
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=87.56 E-value=1.2 Score=53.66 Aligned_cols=17 Identities=53% Similarity=0.835 Sum_probs=15.0
Q ss_pred CeEEEEccCCCccHHHH
Q 000756 512 DNILLCAPTGAGKTNVA 528 (1300)
Q Consensus 512 ~nvLi~APTGsGKT~va 528 (1300)
+-+|+-+|+|+|||++|
T Consensus 257 KGiLLyGPPGTGKTLiA 273 (744)
T KOG0741|consen 257 KGILLYGPPGTGKTLIA 273 (744)
T ss_pred eeEEEECCCCCChhHHH
Confidence 35899999999999976
No 397
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=87.35 E-value=4.7 Score=50.10 Aligned_cols=143 Identities=21% Similarity=0.259 Sum_probs=83.9
Q ss_pred HcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhccc-CCcE-EEEEe
Q 000756 508 LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQM-YDVK-VRELS 585 (1300)
Q Consensus 508 l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~-~gi~-V~~lt 585 (1300)
++.+-.+++ -|=-.|||... .||+..+... ..+.+|.|++.-|-.++-++.++..++.. ++-+ +....
T Consensus 200 FKQkaTVFL-VPRRHGKTWf~-VpiIsllL~s--------~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k 269 (668)
T PHA03372 200 FKQKATVFL-VPRRHGKTWFI-IPIISFLLKN--------IIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENK 269 (668)
T ss_pred hhccceEEE-ecccCCceehH-HHHHHHHHHh--------hcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeec
Confidence 455444444 49999999854 4555554442 13679999999999888777777655542 2211 21111
Q ss_pred CCCccchhhhccceEEEECcchH---HHHHhhcCCCcccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCee
Q 000756 586 GDQTLTRQQIEETQIIVTTPEKW---DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIR 662 (1300)
Q Consensus 586 Gd~~~~~~~~~~~~IIV~TPekl---d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~r 662 (1300)
+..|.+.-|++= ...+-.......=+.++++++||||.+. ...+..|+--+ .+.+.+
T Consensus 270 -----------~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~---~~a~~tilgfm------~q~~~K 329 (668)
T PHA03372 270 -----------DNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK---KDAFNTILGFL------AQNTTK 329 (668)
T ss_pred -----------CcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccC---HHHHHHhhhhh------cccCce
Confidence 223444444321 0111111112234678999999999985 55566666654 478899
Q ss_pred EEEEcccCCChHHHHHHHh
Q 000756 663 LVGLSATLPNYEDVALFLR 681 (1300)
Q Consensus 663 iV~LSATlpn~~dva~~L~ 681 (1300)
+|..|-|- ...+-..||.
T Consensus 330 iIfISS~N-sg~~sTSfL~ 347 (668)
T PHA03372 330 IIFISSTN-TTNDATCFLT 347 (668)
T ss_pred EEEEeCCC-CCCccchHHH
Confidence 99999883 2233345663
No 398
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=87.28 E-value=6.4 Score=46.05 Aligned_cols=44 Identities=7% Similarity=0.184 Sum_probs=29.6
Q ss_pred cccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEEccc
Q 000756 619 TYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (1300)
Q Consensus 619 ~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LSAT 669 (1300)
......+++|||+||.|... .-..+++.++..+.+..+|++|..
T Consensus 104 ~~~~~~kV~iI~~ae~m~~~-------AaNaLLKtLEEPp~~t~fiL~t~~ 147 (319)
T PRK06090 104 SQLNGYRLFVIEPADAMNES-------ASNALLKTLEEPAPNCLFLLVTHN 147 (319)
T ss_pred cccCCceEEEecchhhhCHH-------HHHHHHHHhcCCCCCeEEEEEECC
Confidence 44567899999999998631 123355666776667777776654
No 399
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=87.07 E-value=2 Score=51.92 Aligned_cols=51 Identities=20% Similarity=0.408 Sum_probs=37.2
Q ss_pred cccccccEEEEeccccccc--CChhHHHHHHHHHHHHHhhcc--CCeeEEEEccc
Q 000756 619 TYTQLVKLLIIDEIHLLHD--NRGPVLESIVARTVRQIETTK--EHIRLVGLSAT 669 (1300)
Q Consensus 619 ~~l~~v~liIiDEaH~l~d--~rg~~le~iv~rl~~~~~~~~--~~~riV~LSAT 669 (1300)
.+-+.+++||+|++..|.| .-||.+..++..++..+-..+ ...|++.+..|
T Consensus 594 AYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TT 648 (744)
T KOG0741|consen 594 AYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTT 648 (744)
T ss_pred hhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecc
Confidence 4566789999999999998 579999988887766554333 33466666555
No 400
>CHL00176 ftsH cell division protein; Validated
Probab=86.97 E-value=1.5 Score=56.04 Aligned_cols=45 Identities=22% Similarity=0.347 Sum_probs=27.0
Q ss_pred cEEEEecccccccCCh-------hHHHHHHHHHHHHHhhccCCeeEEEEccc
Q 000756 625 KLLIIDEIHLLHDNRG-------PVLESIVARTVRQIETTKEHIRLVGLSAT 669 (1300)
Q Consensus 625 ~liIiDEaH~l~d~rg-------~~le~iv~rl~~~~~~~~~~~riV~LSAT 669 (1300)
.+|+|||+|.+...|+ ...+..+..++..+........++.+.||
T Consensus 277 ~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaT 328 (638)
T CHL00176 277 CIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAAT 328 (638)
T ss_pred cEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEec
Confidence 5899999999864332 33445555555544433344456666666
No 401
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=86.87 E-value=2.6 Score=49.66 Aligned_cols=45 Identities=13% Similarity=0.143 Sum_probs=30.0
Q ss_pred CcccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEEccc
Q 000756 618 RTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (1300)
Q Consensus 618 ~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LSAT 669 (1300)
.......+++|||++|.|... .-..+++.++..+...-+|++|.-
T Consensus 103 ~~~~g~~kV~iI~~ae~m~~~-------AaNaLLKtLEEPp~~t~fiL~t~~ 147 (334)
T PRK07993 103 HARLGGAKVVWLPDAALLTDA-------AANALLKTLEEPPENTWFFLACRE 147 (334)
T ss_pred ccccCCceEEEEcchHhhCHH-------HHHHHHHHhcCCCCCeEEEEEECC
Confidence 345567899999999998632 223456666776666666666543
No 402
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=86.74 E-value=7.3 Score=45.00 Aligned_cols=43 Identities=21% Similarity=0.417 Sum_probs=29.4
Q ss_pred cEEEEeccccccc-CChhHHHHHHHHHHHHHhhccCCeeEEEEcccCC
Q 000756 625 KLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671 (1300)
Q Consensus 625 ~liIiDEaH~l~d-~rg~~le~iv~rl~~~~~~~~~~~riV~LSATlp 671 (1300)
-.+|+||++.... .|...+- .+....++.+.++-++|+|.-+.
T Consensus 139 ViFIldEfDlf~~h~rQtllY----nlfDisqs~r~Piciig~Ttrld 182 (408)
T KOG2228|consen 139 VIFILDEFDLFAPHSRQTLLY----NLFDISQSARAPICIIGVTTRLD 182 (408)
T ss_pred EEEEeehhhccccchhhHHHH----HHHHHHhhcCCCeEEEEeecccc
Confidence 4688999998654 3443333 34445566778899999998873
No 403
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=86.36 E-value=1.4 Score=52.44 Aligned_cols=30 Identities=23% Similarity=0.451 Sum_probs=22.5
Q ss_pred HcCCCeEEEEccCCCccHHHHHHHHHHHHHh
Q 000756 508 LSSADNILLCAPTGAGKTNVAVLTILQQLAL 538 (1300)
Q Consensus 508 l~~~~nvLi~APTGsGKT~va~l~il~~l~~ 538 (1300)
...+..++|+||||||||+.. -++++.+..
T Consensus 131 ~~~~glilI~GpTGSGKTTtL-~aLl~~i~~ 160 (358)
T TIGR02524 131 APQEGIVFITGATGSGKSTLL-AAIIRELAE 160 (358)
T ss_pred hccCCEEEEECCCCCCHHHHH-HHHHHHHhh
Confidence 335678999999999999865 456666543
No 404
>PRK10263 DNA translocase FtsK; Provisional
Probab=86.33 E-value=3.2 Score=55.81 Aligned_cols=56 Identities=21% Similarity=0.352 Sum_probs=33.0
Q ss_pred cEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhcc
Q 000756 625 KLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN 683 (1300)
Q Consensus 625 ~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LSATlpn~~dva~~L~~~ 683 (1300)
-+|||||.+.|....+..++.++.++.+.-.. ..+.+|+.+-. |+.+.+...++.+
T Consensus 1142 IVVIIDE~AdLm~~~~kevE~lI~rLAqkGRA--aGIHLILATQR-PsvDVItg~IKAN 1197 (1355)
T PRK10263 1142 IVVLVDEFADLMMTVGKKVEELIARLAQKARA--AGIHLVLATQR-PSVDVITGLIKAN 1197 (1355)
T ss_pred EEEEEcChHHHHhhhhHHHHHHHHHHHHHhhh--cCeEEEEEecC-cccccchHHHHhh
Confidence 37999999987665566677777777654332 34555554444 3333344444443
No 405
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=86.25 E-value=1.4 Score=54.05 Aligned_cols=55 Identities=20% Similarity=0.201 Sum_probs=32.2
Q ss_pred CCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEE--EcCcHHHHHHHHHHHhhhc
Q 000756 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVY--VAPMKALVAEVVGNLSNRL 574 (1300)
Q Consensus 511 ~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~--iaP~kaLa~q~~~~~~~~l 574 (1300)
+..++++||||+|||+............+ | ..+|.+ .=+.|.-+.++...|.+.+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~----G-----~~kV~LI~~Dt~RigA~EQLr~~Aeil 312 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRH----G-----ASKVALLTTDSYRIGGHEQLRIYGKIL 312 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhc----C-----CCeEEEEeCCccchhHHHHHHHHHHHh
Confidence 35688999999999987654443332222 1 113332 2344566677777776544
No 406
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=86.25 E-value=1.1 Score=54.08 Aligned_cols=20 Identities=40% Similarity=0.630 Sum_probs=16.7
Q ss_pred CCeEEEEccCCCccHHHHHH
Q 000756 511 ADNILLCAPTGAGKTNVAVL 530 (1300)
Q Consensus 511 ~~nvLi~APTGsGKT~va~l 530 (1300)
..++|++||+|+|||.++-.
T Consensus 165 p~gvLL~GppGtGKT~lAka 184 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKA 184 (389)
T ss_pred CCceEEECCCCCChHHHHHH
Confidence 45799999999999987643
No 407
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=86.24 E-value=5.3 Score=49.19 Aligned_cols=73 Identities=18% Similarity=0.223 Sum_probs=51.6
Q ss_pred CCCHHHHHHHHHHHc-----CC----CeEEEEccCCCccHHHHH-HHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHH
Q 000756 495 QLNRVQSRVYKSALS-----SA----DNILLCAPTGAGKTNVAV-LTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564 (1300)
Q Consensus 495 ~ln~iQ~~~i~~~l~-----~~----~nvLi~APTGsGKT~va~-l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~ 564 (1300)
.+-|+|.=++-+++. ++ .-.+|..|-|-|||..+. +.....+.... .+.++.+++|+.+-+.
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~--------~~~~~~i~A~s~~qa~ 132 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWR--------SGAGIYILAPSVEQAA 132 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhh--------cCCcEEEEeccHHHHH
Confidence 566788888888772 11 147889999999987665 44444444331 3557999999999998
Q ss_pred HHHHHHhhhcc
Q 000756 565 EVVGNLSNRLQ 575 (1300)
Q Consensus 565 q~~~~~~~~l~ 575 (1300)
+.+...+..+.
T Consensus 133 ~~F~~ar~mv~ 143 (546)
T COG4626 133 NSFNPARDMVK 143 (546)
T ss_pred HhhHHHHHHHH
Confidence 88887776554
No 408
>PRK09183 transposase/IS protein; Provisional
Probab=86.07 E-value=2.1 Score=48.70 Aligned_cols=25 Identities=36% Similarity=0.632 Sum_probs=19.9
Q ss_pred HcCCCeEEEEccCCCccHHHHHHHH
Q 000756 508 LSSADNILLCAPTGAGKTNVAVLTI 532 (1300)
Q Consensus 508 l~~~~nvLi~APTGsGKT~va~l~i 532 (1300)
+..++|+++.||+|+|||..+....
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~ 123 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALG 123 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHH
Confidence 3456899999999999998776443
No 409
>PRK06321 replicative DNA helicase; Provisional
Probab=86.03 E-value=3.9 Score=50.55 Aligned_cols=144 Identities=19% Similarity=0.303 Sum_probs=69.6
Q ss_pred HcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcccCCcEEEEE-eC
Q 000756 508 LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVREL-SG 586 (1300)
Q Consensus 508 l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~~gi~V~~l-tG 586 (1300)
+..++-++|.|.||.|||..++-.+.+..... +..++|.+. -.-..|++.++..... ++....+ .|
T Consensus 223 l~~G~LiiiaarPgmGKTafal~ia~~~a~~~----------g~~v~~fSL-EMs~~ql~~Rlla~~s--~v~~~~i~~~ 289 (472)
T PRK06321 223 FSPSNLMILAARPAMGKTALALNIAENFCFQN----------RLPVGIFSL-EMTVDQLIHRIICSRS--EVESKKISVG 289 (472)
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHHhc----------CCeEEEEec-cCCHHHHHHHHHHhhc--CCCHHHhhcC
Confidence 34456678999999999998766444333222 224555532 2224455554432211 2222111 22
Q ss_pred CCccch--------hhhccceEEEE-Cc----chHHHHHhhcCCCcccccccEEEEeccccccc-C-------ChhHHHH
Q 000756 587 DQTLTR--------QQIEETQIIVT-TP----EKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-N-------RGPVLES 645 (1300)
Q Consensus 587 d~~~~~--------~~~~~~~IIV~-TP----ekld~l~r~~~~~~~l~~v~liIiDEaH~l~d-~-------rg~~le~ 645 (1300)
+..... ..+....+.|- +| +.+....|+.. .-..+++||||=++++.. . |...+..
T Consensus 290 ~l~~~e~~~~~~a~~~l~~~~~~idd~~~~ti~~i~~~~r~~~---~~~~~~lvvIDyLql~~~~~~~~~~~~r~~ei~~ 366 (472)
T PRK06321 290 DLSGRDFQRIVSVVNEMQEHTLLIDDQPGLKITDLRARARRMK---ESYDIQFLIIDYLQLLSGSGNLRNSESRQTEISE 366 (472)
T ss_pred CCCHHHHHHHHHHHHHHHcCCEEEeCCCCCCHHHHHHHHHHHH---HhcCCCEEEEcchHHcCCCCccCCcchHHHHHHH
Confidence 221110 11234456664 33 22322233322 123589999999999853 1 1122333
Q ss_pred HHHHHHHHHhhccCCeeEEEEccc
Q 000756 646 IVARTVRQIETTKEHIRLVGLSAT 669 (1300)
Q Consensus 646 iv~rl~~~~~~~~~~~riV~LSAT 669 (1300)
| +|-++.+.. .-++.+|++|-.
T Consensus 367 I-sr~LK~lAk-el~vpVi~lsQL 388 (472)
T PRK06321 367 I-SRMLKNLAR-ELNIPILCLSQL 388 (472)
T ss_pred H-HHHHHHHHH-HhCCcEEEEeec
Confidence 3 222332222 347778888765
No 410
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=85.98 E-value=1 Score=61.73 Aligned_cols=64 Identities=28% Similarity=0.293 Sum_probs=52.7
Q ss_pred HHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhccc
Q 000756 507 ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQM 576 (1300)
Q Consensus 507 ~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~ 576 (1300)
+...+.+++|.|..|||||.+...-+++.+.... ...--.|++|+.|++-+.||..++..++..
T Consensus 12 ~~~~~~~~lveASAGSGKT~vL~~r~lrlLl~~~------~~~v~~ILvvTFT~aAa~Emk~RI~~~L~~ 75 (1139)
T COG1074 12 ASPPGQSVLVEASAGTGKTFVLAERVLRLLLEGG------PLDVDEILVVTFTKAAAAEMKERIRDRLKE 75 (1139)
T ss_pred hcCCCCcEEEEEcCCCCchhHHHHHHHHHHhhcC------CCChhHeeeeeccHHHHHHHHHHHHHHHHH
Confidence 3455678999999999999999888899888742 012347999999999999999999988864
No 411
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=85.93 E-value=2 Score=55.22 Aligned_cols=102 Identities=20% Similarity=0.222 Sum_probs=77.0
Q ss_pred CCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHHH
Q 000756 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLV 812 (1300)
Q Consensus 733 ~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~v 812 (1300)
++++||-||....+..+...++.... ..|+++|++|++.+|..+
T Consensus 245 GkqvLvLVPEI~Ltpq~~~rf~~rFg------------------------------------~~v~vlHS~Ls~~er~~~ 288 (730)
T COG1198 245 GKQVLVLVPEIALTPQLLARFKARFG------------------------------------AKVAVLHSGLSPGERYRV 288 (730)
T ss_pred CCEEEEEeccccchHHHHHHHHHHhC------------------------------------CChhhhcccCChHHHHHH
Confidence 78999999999999999888877642 347889999999999999
Q ss_pred HHHHhCCCccEEEeccccccccCCCCcEEEEecc---eeccCCCCCcccCCHHHHHHhhhccCC
Q 000756 813 EDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGT---QIYNPEKGAWTELSPLDIMQMLGRAGR 873 (1300)
Q Consensus 813 e~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t---~~yd~~~g~~~~~S~~d~lQr~GRAGR 873 (1300)
-....+|..+|+|.|.. |--.-+++...||-.. .-|-... .--|...|+..+.|+-.+
T Consensus 289 W~~~~~G~~~vVIGtRS-AlF~Pf~~LGLIIvDEEHD~sYKq~~--~prYhARdvA~~Ra~~~~ 349 (730)
T COG1198 289 WRRARRGEARVVIGTRS-ALFLPFKNLGLIIVDEEHDSSYKQED--GPRYHARDVAVLRAKKEN 349 (730)
T ss_pred HHHHhcCCceEEEEech-hhcCchhhccEEEEeccccccccCCc--CCCcCHHHHHHHHHHHhC
Confidence 99999999999999976 4456777888887521 1121111 112566777777777655
No 412
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=85.92 E-value=4.8 Score=49.02 Aligned_cols=51 Identities=20% Similarity=0.183 Sum_probs=30.8
Q ss_pred CeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEE-c-CcHHHHHHHHHHHhh
Q 000756 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYV-A-PMKALVAEVVGNLSN 572 (1300)
Q Consensus 512 ~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~i-a-P~kaLa~q~~~~~~~ 572 (1300)
..++++||+|+|||+++.-.+....... +.+++++ + +.|..+.++...+..
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~----------g~kV~lV~~D~~R~~a~~QL~~~a~ 152 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQ----------GKKVLLVACDLYRPAAIEQLKVLGQ 152 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhC----------CCeEEEEeccccchHHHHHHHHHHH
Confidence 3588999999999998765554432221 2234433 2 346656666655544
No 413
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=85.87 E-value=2.7 Score=44.98 Aligned_cols=90 Identities=20% Similarity=0.278 Sum_probs=48.6
Q ss_pred EEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcccCCcEEEEEeCCCccchh
Q 000756 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ 593 (1300)
Q Consensus 514 vLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~~gi~V~~ltGd~~~~~~ 593 (1300)
.++++|-.||||.-.+..+-+... .+.++++..|-.- .++.. + .|..-.|-.
T Consensus 7 ~~i~gpM~SGKT~eLl~r~~~~~~-----------~g~~v~vfkp~iD----------~R~~~-~-~V~Sr~G~~----- 58 (201)
T COG1435 7 EFIYGPMFSGKTEELLRRARRYKE-----------AGMKVLVFKPAID----------TRYGV-G-KVSSRIGLS----- 58 (201)
T ss_pred EEEEccCcCcchHHHHHHHHHHHH-----------cCCeEEEEecccc----------ccccc-c-eeeeccCCc-----
Confidence 589999999999954433333322 2446777777421 11110 1 122222211
Q ss_pred hhccceEEEECcchHHHHHhhcCCCcccccccEEEEeccccccc
Q 000756 594 QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD 637 (1300)
Q Consensus 594 ~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d 637 (1300)
..+.++=.+.+.++.+...... ..+++|.||||+.+..
T Consensus 59 --~~A~~i~~~~~i~~~i~~~~~~----~~~~~v~IDEaQF~~~ 96 (201)
T COG1435 59 --SEAVVIPSDTDIFDEIAALHEK----PPVDCVLIDEAQFFDE 96 (201)
T ss_pred --ccceecCChHHHHHHHHhcccC----CCcCEEEEehhHhCCH
Confidence 1233333444445666654331 1278999999999764
No 414
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=85.82 E-value=1.4 Score=52.39 Aligned_cols=44 Identities=20% Similarity=0.338 Sum_probs=28.2
Q ss_pred cCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHH
Q 000756 509 SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (1300)
Q Consensus 509 ~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaL 562 (1300)
....+++|+||||||||+.. .+++..+... .+.+++.+--..++
T Consensus 120 ~~~g~ili~G~tGSGKTT~l-~al~~~i~~~---------~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTL-ASMIDYINKN---------AAGHIITIEDPIEY 163 (343)
T ss_pred hcCcEEEEECCCCCCHHHHH-HHHHHhhCcC---------CCCEEEEEcCChhh
Confidence 34578999999999999865 3445554321 13367766554443
No 415
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=85.73 E-value=0.99 Score=49.07 Aligned_cols=24 Identities=25% Similarity=0.566 Sum_probs=18.3
Q ss_pred eEEEEccCCCccHHHHHHHHHHHHH
Q 000756 513 NILLCAPTGAGKTNVAVLTILQQLA 537 (1300)
Q Consensus 513 nvLi~APTGsGKT~va~l~il~~l~ 537 (1300)
-++|+||||||||+.. .+++..+.
T Consensus 3 lilI~GptGSGKTTll-~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTL-AAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHhh
Confidence 4899999999999975 44555554
No 416
>PRK10867 signal recognition particle protein; Provisional
Probab=85.66 E-value=5.4 Score=48.60 Aligned_cols=51 Identities=22% Similarity=0.203 Sum_probs=31.1
Q ss_pred CeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEE--cCcHHHHHHHHHHHhh
Q 000756 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYV--APMKALVAEVVGNLSN 572 (1300)
Q Consensus 512 ~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~i--aP~kaLa~q~~~~~~~ 572 (1300)
..+++++|+|+|||+.+.-.+....... +.++++| =+.|+.+.++...|.+
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~----------G~kV~lV~~D~~R~aa~eQL~~~a~ 153 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKK----------KKKVLLVAADVYRPAAIEQLKTLGE 153 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhc----------CCcEEEEEccccchHHHHHHHHHHh
Confidence 3588999999999987765554433321 1234333 3467766666665544
No 417
>PHA00350 putative assembly protein
Probab=85.63 E-value=5 Score=48.16 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=20.2
Q ss_pred EEEEccCCCccHHHHHH-HHHHHHHhc
Q 000756 514 ILLCAPTGAGKTNVAVL-TILQQLALN 539 (1300)
Q Consensus 514 vLi~APTGsGKT~va~l-~il~~l~~~ 539 (1300)
.++.|..|||||.-++- .|+..+..+
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~G 30 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKDG 30 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHCC
Confidence 47899999999998876 466666553
No 418
>PF12846 AAA_10: AAA-like domain
Probab=85.43 E-value=1.1 Score=51.52 Aligned_cols=43 Identities=21% Similarity=0.259 Sum_probs=29.6
Q ss_pred CCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHH
Q 000756 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564 (1300)
Q Consensus 511 ~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~ 564 (1300)
+.|++|+|+||||||+.+...+.+.+.. +..++++=|..+...
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~-----------g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRR-----------GPRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHc-----------CCCEEEEcCCchHHH
Confidence 3579999999999998887544444443 345777766654433
No 419
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=85.37 E-value=1.1 Score=55.42 Aligned_cols=40 Identities=25% Similarity=0.406 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHcCC-CeEEEEccCCCccHHHHHHHHHHHH
Q 000756 496 LNRVQSRVYKSALSSA-DNILLCAPTGAGKTNVAVLTILQQL 536 (1300)
Q Consensus 496 ln~iQ~~~i~~~l~~~-~nvLi~APTGsGKT~va~l~il~~l 536 (1300)
+.+-|.+.+..++... .-++|+||||||||+.. .++++.+
T Consensus 226 ~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l 266 (486)
T TIGR02533 226 MSPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRL 266 (486)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhcc
Confidence 4778888888777643 45789999999999865 3344444
No 420
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=85.37 E-value=0.96 Score=59.32 Aligned_cols=46 Identities=26% Similarity=0.440 Sum_probs=28.4
Q ss_pred ccEEEEecccccccCChh-----HHHHHHHHHHHHHhhccCCeeEEEEccc
Q 000756 624 VKLLIIDEIHLLHDNRGP-----VLESIVARTVRQIETTKEHIRLVGLSAT 669 (1300)
Q Consensus 624 v~liIiDEaH~l~d~rg~-----~le~iv~rl~~~~~~~~~~~riV~LSAT 669 (1300)
..+|+|||+|.+...|+. ..+.++..++..+......-+++.+.||
T Consensus 547 p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aT 597 (733)
T TIGR01243 547 PAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAAT 597 (733)
T ss_pred CEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeC
Confidence 478999999998754432 3445556555555443344456666666
No 421
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=85.15 E-value=2.8 Score=55.86 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=18.7
Q ss_pred CCCeEEEEccCCCccHHHHHHHH
Q 000756 510 SADNILLCAPTGAGKTNVAVLTI 532 (1300)
Q Consensus 510 ~~~nvLi~APTGsGKT~va~l~i 532 (1300)
...|+++.||+|+|||.++...+
T Consensus 193 ~~~n~lL~G~pGvGKT~l~~~la 215 (852)
T TIGR03346 193 TKNNPVLIGEPGVGKTAIVEGLA 215 (852)
T ss_pred CCCceEEEcCCCCCHHHHHHHHH
Confidence 34689999999999999886443
No 422
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=85.04 E-value=1.3 Score=53.80 Aligned_cols=42 Identities=29% Similarity=0.392 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHHcC-CCeEEEEccCCCccHHHHHHHHHHHHHh
Q 000756 496 LNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAVLTILQQLAL 538 (1300)
Q Consensus 496 ln~iQ~~~i~~~l~~-~~nvLi~APTGsGKT~va~l~il~~l~~ 538 (1300)
+++.|.+.+..+++. ..=+|+.||||||||+. +.+++..+..
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~ 284 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNT 284 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcC
Confidence 478888888888765 34578999999999985 3455555544
No 423
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=84.99 E-value=1.5 Score=49.72 Aligned_cols=64 Identities=16% Similarity=0.245 Sum_probs=37.3
Q ss_pred HHHHHHHcC----CCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHH
Q 000756 502 RVYKSALSS----ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1300)
Q Consensus 502 ~~i~~~l~~----~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~ 570 (1300)
..++.++.+ +.-.=|+||.|||||..++...+........ .| .+.++|||--....-.+....+
T Consensus 25 ~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~-~g----~~~~vvyidTe~~f~~~Rl~~i 92 (256)
T PF08423_consen 25 KSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEI-GG----LGGKVVYIDTEGTFSPERLQQI 92 (256)
T ss_dssp HHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCT-TS----SSSEEEEEESSSSS-HHHHHHH
T ss_pred HHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhccccc-cc----CCCceEEEeCCCCCCHHHHHHH
Confidence 356677655 3445599999999998877655544322110 11 2458999965444433333333
No 424
>PRK13764 ATPase; Provisional
Probab=84.93 E-value=1.5 Score=55.39 Aligned_cols=33 Identities=27% Similarity=0.385 Sum_probs=23.8
Q ss_pred HHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHH
Q 000756 504 YKSALSSADNILLCAPTGAGKTNVAVLTILQQLA 537 (1300)
Q Consensus 504 i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~ 537 (1300)
+..+.....|+||+||||||||+.+ .+++..+.
T Consensus 250 ~~~l~~~~~~ILIsG~TGSGKTTll-~AL~~~i~ 282 (602)
T PRK13764 250 KERLEERAEGILIAGAPGAGKSTFA-QALAEFYA 282 (602)
T ss_pred HHHHHhcCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 3444455688999999999999865 45555554
No 425
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=84.92 E-value=3.6 Score=42.95 Aligned_cols=37 Identities=30% Similarity=0.392 Sum_probs=29.5
Q ss_pred EEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHH
Q 000756 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561 (1300)
Q Consensus 514 vLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~ka 561 (1300)
+.|-.++|.|||.+++-..++.+.. +.+|+++.=+|.
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~~-----------g~~v~~vQFlKg 41 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALGH-----------GYRVGVVQFLKG 41 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC-----------CCeEEEEEEeCC
Confidence 5666788999999998888888765 457888777766
No 426
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=84.92 E-value=4.1 Score=49.22 Aligned_cols=19 Identities=42% Similarity=0.684 Sum_probs=16.5
Q ss_pred CCeEEEEccCCCccHHHHH
Q 000756 511 ADNILLCAPTGAGKTNVAV 529 (1300)
Q Consensus 511 ~~nvLi~APTGsGKT~va~ 529 (1300)
...+|+.||+|+|||+.+-
T Consensus 179 pkgvLL~GppGTGKT~LAk 197 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAK 197 (398)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999999763
No 427
>PRK10865 protein disaggregation chaperone; Provisional
Probab=84.92 E-value=3.6 Score=54.82 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=18.6
Q ss_pred CCeEEEEccCCCccHHHHHHHHH
Q 000756 511 ADNILLCAPTGAGKTNVAVLTIL 533 (1300)
Q Consensus 511 ~~nvLi~APTGsGKT~va~l~il 533 (1300)
..|+++.||+|+|||.++...+.
T Consensus 199 ~~n~lL~G~pGvGKT~l~~~la~ 221 (857)
T PRK10865 199 KNNPVLIGEPGVGKTAIVEGLAQ 221 (857)
T ss_pred cCceEEECCCCCCHHHHHHHHHH
Confidence 45899999999999998854443
No 428
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=84.83 E-value=4.1 Score=50.96 Aligned_cols=75 Identities=16% Similarity=0.243 Sum_probs=60.1
Q ss_pred CCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHHH
Q 000756 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLV 812 (1300)
Q Consensus 733 ~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~v 812 (1300)
++++||.+|++.-+..++..|++.. ...++++||+++..+|..+
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f------------------------------------~~~v~vlhs~~~~~er~~~ 68 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRF------------------------------------GSQVAVLHSGLSDSEKLQA 68 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHh------------------------------------CCcEEEEECCCCHHHHHHH
Confidence 6799999999999998888877542 1237888999999999999
Q ss_pred HHHHhCCCccEEEeccccccccCCCCcEEEEe
Q 000756 813 EDLFGDGHVQVLVSTATLAWGVNLPAHTVIIK 844 (1300)
Q Consensus 813 e~~F~~g~i~VLVaT~tla~GVdlPav~vVI~ 844 (1300)
......|..+|+|+|..+.. ..+++..+||-
T Consensus 69 ~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIV 99 (505)
T TIGR00595 69 WRKVKNGEILVVIGTRSALF-LPFKNLGLIIV 99 (505)
T ss_pred HHHHHcCCCCEEECChHHHc-CcccCCCEEEE
Confidence 99899999999999975433 45666666664
No 429
>PRK05580 primosome assembly protein PriA; Validated
Probab=84.80 E-value=4.1 Score=52.87 Aligned_cols=75 Identities=19% Similarity=0.232 Sum_probs=59.9
Q ss_pred CCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHHH
Q 000756 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLV 812 (1300)
Q Consensus 733 ~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~v 812 (1300)
+.++||.+|++.-+..+++.+.+.. +..++.+||+++..+|...
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~f------------------------------------g~~v~~~~s~~s~~~r~~~ 233 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARF------------------------------------GAPVAVLHSGLSDGERLDE 233 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHh------------------------------------CCCEEEEECCCCHHHHHHH
Confidence 6799999999999998888776532 1247889999999999999
Q ss_pred HHHHhCCCccEEEeccccccccCCCCcEEEEe
Q 000756 813 EDLFGDGHVQVLVSTATLAWGVNLPAHTVIIK 844 (1300)
Q Consensus 813 e~~F~~g~i~VLVaT~tla~GVdlPav~vVI~ 844 (1300)
......|..+|+|+|..... +.+++...||-
T Consensus 234 ~~~~~~g~~~IVVgTrsal~-~p~~~l~liVv 264 (679)
T PRK05580 234 WRKAKRGEAKVVIGARSALF-LPFKNLGLIIV 264 (679)
T ss_pred HHHHHcCCCCEEEeccHHhc-ccccCCCEEEE
Confidence 99999999999999975432 55666666663
No 430
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=84.75 E-value=1.3 Score=52.38 Aligned_cols=57 Identities=23% Similarity=0.345 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHH
Q 000756 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (1300)
Q Consensus 494 ~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaL 562 (1300)
..+++.+.+.+..+...+.|++|+++||||||+..- +++..+. ...+++++--+.+|
T Consensus 161 g~~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll~-al~~~i~-----------~~~riv~iEd~~El 217 (340)
T TIGR03819 161 GTFPPGVARLLRAIVAARLAFLISGGTGSGKTTLLS-ALLALVA-----------PDERIVLVEDAAEL 217 (340)
T ss_pred CCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHH-HHHccCC-----------CCCcEEEECCccee
Confidence 346788888898888888999999999999998542 2333221 12357777776665
No 431
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=84.56 E-value=3 Score=52.06 Aligned_cols=19 Identities=42% Similarity=0.693 Sum_probs=16.3
Q ss_pred CCeEEEEccCCCccHHHHH
Q 000756 511 ADNILLCAPTGAGKTNVAV 529 (1300)
Q Consensus 511 ~~nvLi~APTGsGKT~va~ 529 (1300)
..++|++||+|+|||..+-
T Consensus 88 ~~giLL~GppGtGKT~la~ 106 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAK 106 (495)
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 3579999999999998764
No 432
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=84.51 E-value=1 Score=51.52 Aligned_cols=30 Identities=33% Similarity=0.483 Sum_probs=23.9
Q ss_pred HHHHHHHHcCCCeEEEEccCCCccHHHHHH
Q 000756 501 SRVYKSALSSADNILLCAPTGAGKTNVAVL 530 (1300)
Q Consensus 501 ~~~i~~~l~~~~nvLi~APTGsGKT~va~l 530 (1300)
...+..++..+.++|++||||+|||.+..-
T Consensus 23 ~~ll~~l~~~~~pvLl~G~~GtGKT~li~~ 52 (272)
T PF12775_consen 23 SYLLDLLLSNGRPVLLVGPSGTGKTSLIQN 52 (272)
T ss_dssp HHHHHHHHHCTEEEEEESSTTSSHHHHHHH
T ss_pred HHHHHHHHHcCCcEEEECCCCCchhHHHHh
Confidence 345566778889999999999999986543
No 433
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=84.33 E-value=0.42 Score=52.62 Aligned_cols=17 Identities=47% Similarity=0.888 Sum_probs=15.0
Q ss_pred CCeEEEEccCCCccHHH
Q 000756 511 ADNILLCAPTGAGKTNV 527 (1300)
Q Consensus 511 ~~nvLi~APTGsGKT~v 527 (1300)
...++|.||-|+|||..
T Consensus 20 ~~~~~l~G~rg~GKTsL 36 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSL 36 (234)
T ss_dssp SSEEEEEESTTSSHHHH
T ss_pred CcEEEEEcCCcCCHHHH
Confidence 46799999999999985
No 434
>PRK09165 replicative DNA helicase; Provisional
Probab=84.17 E-value=3.6 Score=51.26 Aligned_cols=154 Identities=16% Similarity=0.276 Sum_probs=74.3
Q ss_pred HcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCC---CCCC-CCCCcEEEEEcCcHHHHHHHHHHHhhhcccCCcEEEE
Q 000756 508 LSSADNILLCAPTGAGKTNVAVLTILQQLALNRND---DGSF-NHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRE 583 (1300)
Q Consensus 508 l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~---~g~~-~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~~gi~V~~ 583 (1300)
+..++-++|.|+||.|||..++-.+.+....+... .+.. ...+.+|+|+.. -.-..|+..++-.... ++....
T Consensus 214 ~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSl-EMs~~ql~~R~la~~s--~v~~~~ 290 (497)
T PRK09165 214 LHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSL-EMSAEQLATRILSEQS--EISSSK 290 (497)
T ss_pred CCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeC-cCCHHHHHHHHHHHhc--CCCHHH
Confidence 34467789999999999998876665554332100 0000 011346766643 3334566666533322 222111
Q ss_pred -EeCCCccch--------hhhccceEEEEC-cch-HHHH---HhhcCCCcccccccEEEEecccccccC-------ChhH
Q 000756 584 -LSGDQTLTR--------QQIEETQIIVTT-PEK-WDII---TRKSGDRTYTQLVKLLIIDEIHLLHDN-------RGPV 642 (1300)
Q Consensus 584 -ltGd~~~~~--------~~~~~~~IIV~T-Pek-ld~l---~r~~~~~~~l~~v~liIiDEaH~l~d~-------rg~~ 642 (1300)
..|...... ..+....+.|.. |+. ++.+ .|+.. .-..+++||||=+|++... |...
T Consensus 291 i~~~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~---~~~~~~lvvIDyLqli~~~~~~~~~~r~~e 367 (497)
T PRK09165 291 IRRGKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLK---RQHGLDLLVVDYLQLIRGSSKRSSDNRVQE 367 (497)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHH---HhcCCCEEEEcchHhccCCCCCCCCchHHH
Confidence 122221110 112334455543 321 2222 33322 1235899999999998632 1122
Q ss_pred HHHHHHHHHHHHhhccCCeeEEEEccc
Q 000756 643 LESIVARTVRQIETTKEHIRLVGLSAT 669 (1300)
Q Consensus 643 le~iv~rl~~~~~~~~~~~riV~LSAT 669 (1300)
+..+... ++.+.. .-++.+|++|-.
T Consensus 368 v~~is~~-LK~lAk-el~ipVi~lsQL 392 (497)
T PRK09165 368 ISEITQG-LKALAK-ELNIPVIALSQL 392 (497)
T ss_pred HHHHHHH-HHHHHH-HhCCeEEEeecc
Confidence 3333333 333322 346777887764
No 435
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=84.16 E-value=0.6 Score=43.80 Aligned_cols=57 Identities=16% Similarity=0.057 Sum_probs=42.8
Q ss_pred HHHHHHHCCCccccccCCceeeccccccccccccccccHHHHHhhcCCCCChHHHHHHhcCC
Q 000756 975 AATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLS 1036 (1300)
Q Consensus 975 a~~~L~~~~~i~~~~~~~~~~~T~lG~ias~~yi~~~T~~~~~~~l~~~~~~~~il~ils~s 1036 (1300)
|+..|...|+|+.+ | .+|++|+.++.++++|.-.+++...........+++.+++..
T Consensus 2 A~~~L~~LgAld~~---~--~lT~lG~~m~~lPl~Prla~~Ll~a~~~~~c~~~~~~i~a~l 58 (92)
T smart00847 2 ALELLYELGALDDD---G--RLTPLGRKMAELPLDPRLAKMLLAAAELFGCLDEILTIAAML 58 (92)
T ss_pred HHHHHHHCCCcCCC---C--CcCHHHHHHHHCCCChHHHHHHHHHHhhcCcHHHHHHHHHHh
Confidence 67889999999642 3 799999999999999999999987654202345666665543
No 436
>PRK07773 replicative DNA helicase; Validated
Probab=84.04 E-value=3.7 Score=55.00 Aligned_cols=144 Identities=18% Similarity=0.266 Sum_probs=72.3
Q ss_pred HcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcccCCcEEEEE-eC
Q 000756 508 LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVREL-SG 586 (1300)
Q Consensus 508 l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~~gi~V~~l-tG 586 (1300)
+..++-++|.|++|+|||..++-.+.+...++ +..++|.. +-.-..|+..++..... ++....+ .|
T Consensus 214 l~~G~livIagrPg~GKT~fal~ia~~~a~~~----------~~~V~~fS-lEms~~ql~~R~~s~~~--~i~~~~i~~g 280 (886)
T PRK07773 214 LHPGQLIIVAARPSMGKTTFGLDFARNCAIRH----------RLAVAIFS-LEMSKEQLVMRLLSAEA--KIKLSDMRSG 280 (886)
T ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHHHhc----------CCeEEEEe-cCCCHHHHHHHHHHHhc--CCCHHHHhcC
Confidence 34567789999999999998877666655432 22455554 22234455555443222 2211111 22
Q ss_pred CCccch--------hhhccceEEEE-Ccch-HHHH---HhhcCCCcccccccEEEEecccccccC-----ChhHHHHHHH
Q 000756 587 DQTLTR--------QQIEETQIIVT-TPEK-WDII---TRKSGDRTYTQLVKLLIIDEIHLLHDN-----RGPVLESIVA 648 (1300)
Q Consensus 587 d~~~~~--------~~~~~~~IIV~-TPek-ld~l---~r~~~~~~~l~~v~liIiDEaH~l~d~-----rg~~le~iv~ 648 (1300)
...... ..+.+..+.|. +|.- ++.+ .|+... -..+++||||=++++... |...+..+..
T Consensus 281 ~l~~~~~~~~~~a~~~l~~~~i~i~d~~~~~i~~i~~~~r~~~~---~~~~~lvvIDyLql~~~~~~~~~r~~ei~~isr 357 (886)
T PRK07773 281 RMSDDDWTRLARAMGEISEAPIFIDDTPNLTVMEIRAKARRLRQ---EANLGLIVVDYLQLMTSGKKYENRQQEVSEISR 357 (886)
T ss_pred CCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH---hcCCCEEEEcchhhcCCCCCCCCHHHHHHHHHH
Confidence 211111 11233455553 3322 3223 222221 125899999999998532 2233444433
Q ss_pred HHHHHHhhccCCeeEEEEccc
Q 000756 649 RTVRQIETTKEHIRLVGLSAT 669 (1300)
Q Consensus 649 rl~~~~~~~~~~~riV~LSAT 669 (1300)
. ++.+.. .-++.+|++|-.
T Consensus 358 ~-LK~lAk-el~vpvi~lsQL 376 (886)
T PRK07773 358 H-LKLLAK-ELEVPVVALSQL 376 (886)
T ss_pred H-HHHHHH-HHCCcEEEeccc
Confidence 3 332222 347788888855
No 437
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=83.75 E-value=1.2 Score=51.90 Aligned_cols=28 Identities=32% Similarity=0.523 Sum_probs=22.7
Q ss_pred HHHHHHHHcCCCeEEEEccCCCccHHHH
Q 000756 501 SRVYKSALSSADNILLCAPTGAGKTNVA 528 (1300)
Q Consensus 501 ~~~i~~~l~~~~nvLi~APTGsGKT~va 528 (1300)
.+.+..++..+.+++++||||||||+..
T Consensus 134 ~~~l~~~v~~~~~ili~G~tGsGKTTll 161 (308)
T TIGR02788 134 KEFLRLAIASRKNIIISGGTGSGKTTFL 161 (308)
T ss_pred HHHHHHHhhCCCEEEEECCCCCCHHHHH
Confidence 3445566778899999999999999864
No 438
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=83.64 E-value=6.1 Score=48.67 Aligned_cols=55 Identities=18% Similarity=0.271 Sum_probs=35.6
Q ss_pred HHHHHcC----CCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHH
Q 000756 504 YKSALSS----ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1300)
Q Consensus 504 i~~~l~~----~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~ 570 (1300)
++.++.+ +.-++|.|++|+|||+.++..+.+.... +.+++|+..-.. ..|+..+.
T Consensus 83 LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~-----------g~kvlYvs~EEs-~~qi~~ra 141 (454)
T TIGR00416 83 LDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKN-----------QMKVLYVSGEES-LQQIKMRA 141 (454)
T ss_pred HHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhc-----------CCcEEEEECcCC-HHHHHHHH
Confidence 4455443 5678999999999999887665544322 236899886433 44554443
No 439
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=83.59 E-value=3.7 Score=48.45 Aligned_cols=45 Identities=18% Similarity=0.104 Sum_probs=28.8
Q ss_pred CCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcH
Q 000756 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMK 560 (1300)
Q Consensus 511 ~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~k 560 (1300)
+.-+.|+||+|||||..++..++........ .| .+.+++||.---
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~-gg----~~~~vvyIdTE~ 170 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEM-GG----GNGKVAYIDTEG 170 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhh-CC----CCceEEEEEcCC
Confidence 4567899999999999877655544321100 01 134899997743
No 440
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=83.53 E-value=5.7 Score=52.19 Aligned_cols=20 Identities=40% Similarity=0.657 Sum_probs=16.6
Q ss_pred CCCeEEEEccCCCccHHHHH
Q 000756 510 SADNILLCAPTGAGKTNVAV 529 (1300)
Q Consensus 510 ~~~nvLi~APTGsGKT~va~ 529 (1300)
....++++||+|+|||..+-
T Consensus 211 ~~~giLL~GppGtGKT~lar 230 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLAK 230 (733)
T ss_pred CCceEEEECCCCCChHHHHH
Confidence 34679999999999998753
No 441
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=83.49 E-value=4 Score=52.58 Aligned_cols=80 Identities=15% Similarity=0.214 Sum_probs=64.4
Q ss_pred CCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHH
Q 000756 732 GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQL 811 (1300)
Q Consensus 732 ~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ 811 (1300)
.+.+++|-+||+.-|...+..+...... +...++.+||+++..+|..
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~---------------------------------~gi~v~lltg~~~~~~r~~ 329 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAP---------------------------------LGIEVALLTGSLKGKRRKE 329 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcc---------------------------------cCcEEEEEecCCCHHHHHH
Confidence 3679999999999999888888765321 1234788999999999999
Q ss_pred HHHHHhCCCccEEEecccc-ccccCCCCcEEEEe
Q 000756 812 VEDLFGDGHVQVLVSTATL-AWGVNLPAHTVIIK 844 (1300)
Q Consensus 812 ve~~F~~g~i~VLVaT~tl-a~GVdlPav~vVI~ 844 (1300)
+.+...+|...|+|+|..+ ...+.+..+.+||-
T Consensus 330 ~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 330 LLETIASGQIHLVVGTHALIQEKVEFKRLALVII 363 (630)
T ss_pred HHHHHhCCCCCEEEecHHHHhccccccccceEEE
Confidence 9999999999999999644 44677888887773
No 442
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=83.40 E-value=1.9 Score=48.03 Aligned_cols=44 Identities=18% Similarity=0.163 Sum_probs=28.3
Q ss_pred CCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcC
Q 000756 510 SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (1300)
Q Consensus 510 ~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP 558 (1300)
.+.-+.|+||+|||||..++..+......... .| .+.+++|+.-
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~-~g----~~~~viyi~~ 61 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIEL-GG----LEGKAVYIDT 61 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCcccc-CC----CCccEEEEeC
Confidence 35678999999999999887666553322100 00 1346888874
No 443
>CHL00195 ycf46 Ycf46; Provisional
Probab=83.17 E-value=3.7 Score=50.85 Aligned_cols=18 Identities=33% Similarity=0.501 Sum_probs=15.9
Q ss_pred CCeEEEEccCCCccHHHH
Q 000756 511 ADNILLCAPTGAGKTNVA 528 (1300)
Q Consensus 511 ~~nvLi~APTGsGKT~va 528 (1300)
...+|+.||+|+|||+.+
T Consensus 259 pkGILL~GPpGTGKTllA 276 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTA 276 (489)
T ss_pred CceEEEECCCCCcHHHHH
Confidence 456999999999999877
No 444
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=83.02 E-value=18 Score=42.66 Aligned_cols=103 Identities=17% Similarity=0.225 Sum_probs=46.7
Q ss_pred EEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHH----HHHHhhhccc-CCcEEEEEeCCCc
Q 000756 515 LLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV----VGNLSNRLQM-YDVKVRELSGDQT 589 (1300)
Q Consensus 515 Li~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~----~~~~~~~l~~-~gi~V~~ltGd~~ 589 (1300)
++.+|.|+|||.+....++..+..... ...++++ |+..-+... .......... +...........
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~--------~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 70 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPP--------GRRVIIA-STYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRK- 70 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS----------EEEEE-ESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSE-
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCC--------CcEEEEe-cCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCc-
Confidence 577899999999987777766655321 1345555 655444442 2233333333 222222111111
Q ss_pred cchhhhccceEEEECcc---hHHHHHhhcCCCcccccccEEEEeccccccc
Q 000756 590 LTRQQIEETQIIVTTPE---KWDIITRKSGDRTYTQLVKLLIIDEIHLLHD 637 (1300)
Q Consensus 590 ~~~~~~~~~~IIV~TPe---kld~l~r~~~~~~~l~~v~liIiDEaH~l~d 637 (1300)
... ..++.|.+.+-. ..+.+.- ..++++|+||+-.+.+
T Consensus 71 ~~~--~nG~~i~~~~~~~~~~~~~~~G--------~~~~~i~iDE~~~~~~ 111 (384)
T PF03237_consen 71 IIL--PNGSRIQFRGADSPDSGDNIRG--------FEYDLIIIDEAAKVPD 111 (384)
T ss_dssp EEE--TTS-EEEEES-----SHHHHHT--------S--SEEEEESGGGSTT
T ss_pred EEe--cCceEEEEeccccccccccccc--------cccceeeeeecccCch
Confidence 111 234556666533 1222222 2468999999877653
No 445
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=82.75 E-value=23 Score=39.65 Aligned_cols=44 Identities=25% Similarity=0.283 Sum_probs=28.2
Q ss_pred eEEEEccCCCccHHHHHHHHHHHHHhccCCCC--CCCCCCcEEEEEc
Q 000756 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDG--SFNHSNYKIVYVA 557 (1300)
Q Consensus 513 nvLi~APTGsGKT~va~l~il~~l~~~~~~~g--~~~~~~~kiv~ia 557 (1300)
..++.||.|+|||..++..++..... ..--| .....+.+|+|++
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G-~~~~g~~~~~~~~~~Vlyi~ 48 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALG-KNLFGGGLKVTEPGRVVYLS 48 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcC-ccccCCccccCCCceEEEEE
Confidence 46899999999999887766654322 11111 1122456899998
No 446
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=82.68 E-value=2.4 Score=55.05 Aligned_cols=93 Identities=23% Similarity=0.195 Sum_probs=67.8
Q ss_pred CCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhc
Q 000756 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1300)
Q Consensus 495 ~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l 574 (1300)
.||+-|.+++... ...++|.|..|||||.+..--|.+.+....- ....|+.++=|+-.|.+|..++.+.+
T Consensus 2 ~Ln~~Q~~av~~~---~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v-------~p~~Il~vTFTnkAA~em~~Rl~~~~ 71 (655)
T COG0210 2 KLNPEQREAVLHP---DGPLLVLAGAGSGKTRVLTERIAYLIAAGGV-------DPEQILAITFTNKAAAEMRERLLKLL 71 (655)
T ss_pred CCCHHHHHHHhcC---CCCeEEEECCCCCchhhHHHHHHHHHHcCCc-------ChHHeeeeechHHHHHHHHHHHHHHh
Confidence 6899999998864 4568999999999999988888777766321 23458999999999999999988765
Q ss_pred ccCCcEEEEEeCCCccchhhhccceEEEECcchH-HHHHhhc
Q 000756 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRKS 615 (1300)
Q Consensus 575 ~~~gi~V~~ltGd~~~~~~~~~~~~IIV~TPekl-d~l~r~~ 615 (1300)
.. +. ...+.|+|...+ ..+.|..
T Consensus 72 ~~---------~~---------~~~~~v~TfHs~~~~~lr~~ 95 (655)
T COG0210 72 GL---------PA---------AEGLTVGTFHSFALRILRRH 95 (655)
T ss_pred Cc---------cc---------ccCcEEeeHHHHHHHHHHHH
Confidence 42 00 011778888875 4455544
No 447
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=82.54 E-value=2.7 Score=54.41 Aligned_cols=45 Identities=22% Similarity=0.285 Sum_probs=34.1
Q ss_pred CCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHH
Q 000756 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (1300)
Q Consensus 511 ~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~ 566 (1300)
+..++|++|+|+|||..++..+...... +.+++|+..--++..+.
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~a~~~-----------G~~v~yId~E~t~~~~~ 104 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVANAQAA-----------GGVAAFIDAEHALDPDY 104 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc-----------CCcEEEECCccchhHHH
Confidence 4678899999999999988777665432 34689998877776543
No 448
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=82.48 E-value=7.2 Score=45.87 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHHcC----CCeEEEEccCCCccHHHHHHHH
Q 000756 497 NRVQSRVYKSALSS----ADNILLCAPTGAGKTNVAVLTI 532 (1300)
Q Consensus 497 n~iQ~~~i~~~l~~----~~nvLi~APTGsGKT~va~l~i 532 (1300)
+|+|...+..+... ...+|++||.|+|||..+...+
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a 42 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAA 42 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHH
Confidence 45666666655432 2358999999999999886544
No 449
>PHA02542 41 41 helicase; Provisional
Probab=82.37 E-value=3.4 Score=51.06 Aligned_cols=28 Identities=18% Similarity=0.014 Sum_probs=21.8
Q ss_pred cCCCeEEEEccCCCccHHHHHHHHHHHH
Q 000756 509 SSADNILLCAPTGAGKTNVAVLTILQQL 536 (1300)
Q Consensus 509 ~~~~nvLi~APTGsGKT~va~l~il~~l 536 (1300)
..++-++|.|++|.|||..++-.+.+..
T Consensus 188 ~~G~LiiIaarPgmGKTtfalniA~~~a 215 (473)
T PHA02542 188 ERKTLNVLLAGVNVGKSLGLCSLAADYL 215 (473)
T ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHHH
Confidence 3456688999999999998876665554
No 450
>PRK13695 putative NTPase; Provisional
Probab=82.31 E-value=29 Score=36.58 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=18.0
Q ss_pred eEEEEccCCCccHHHHHHHHHHHHH
Q 000756 513 NILLCAPTGAGKTNVAVLTILQQLA 537 (1300)
Q Consensus 513 nvLi~APTGsGKT~va~l~il~~l~ 537 (1300)
++++.++.|+|||+.+.. +...+.
T Consensus 2 ~i~ltG~~G~GKTTll~~-i~~~l~ 25 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLK-IAELLK 25 (174)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHHH
Confidence 478999999999998764 334443
No 451
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=82.15 E-value=3.2 Score=52.43 Aligned_cols=46 Identities=17% Similarity=0.349 Sum_probs=31.3
Q ss_pred ccEEEEeccccccc------CChhHHHHHHHHHHHHHhhcc--CCeeEEEEccc
Q 000756 624 VKLLIIDEIHLLHD------NRGPVLESIVARTVRQIETTK--EHIRLVGLSAT 669 (1300)
Q Consensus 624 v~liIiDEaH~l~d------~rg~~le~iv~rl~~~~~~~~--~~~riV~LSAT 669 (1300)
-..|.+||++-+.. +.|-++..+|+.++.-+.... ..-.+..+.||
T Consensus 765 PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGAT 818 (953)
T KOG0736|consen 765 PCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGAT 818 (953)
T ss_pred CeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecC
Confidence 46788999998853 457799999999887654433 23334445566
No 452
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=82.12 E-value=2.4 Score=58.57 Aligned_cols=61 Identities=25% Similarity=0.277 Sum_probs=49.9
Q ss_pred HcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhccc
Q 000756 508 LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQM 576 (1300)
Q Consensus 508 l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~ 576 (1300)
.....+++|.|+-|||||.+...-+++.+.... ...+|++|+.|+.-|.||..++.+.+..
T Consensus 7 ~dp~~~~~~~a~agsgkt~~l~~~~~~~~~~~~--------~~~~i~~~t~t~~aa~em~~Ri~~~L~~ 67 (1141)
T TIGR02784 7 SDPKTSAWVSANAGSGKTHVLTQRVIRLLLNGV--------PPSKILCLTYTKAAAAEMQNRVFDRLGE 67 (1141)
T ss_pred cCCCCCEEEEEECCCCHHHHHHHHHHHHHHcCC--------CCCeEEEEecCHHHHHHHHHHHHHHHHH
Confidence 344568999999999999998888887776432 2348999999999999999999888753
No 453
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=81.90 E-value=4.3 Score=42.98 Aligned_cols=38 Identities=26% Similarity=0.293 Sum_probs=30.1
Q ss_pred eEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHH
Q 000756 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561 (1300)
Q Consensus 513 nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~ka 561 (1300)
-+.+..++|-|||.+++-.+++.+.. +.+|+++.=+|.
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~-----------g~~v~ivQFlKg 44 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGH-----------GKKVGVIQFIKG 44 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHC-----------CCeEEEEEEecC
Confidence 47788899999999998888888765 457888876665
No 454
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=81.75 E-value=5.3 Score=53.35 Aligned_cols=79 Identities=13% Similarity=0.204 Sum_probs=63.7
Q ss_pred CCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHHH
Q 000756 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLV 812 (1300)
Q Consensus 733 ~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~v 812 (1300)
+.+++|.|||+.-|...+..+...... ++..++.+|++.+..++..+
T Consensus 500 g~qvlvLvPT~~LA~Q~~~~f~~~~~~---------------------------------~~i~v~~Lsg~~~~~e~~~~ 546 (926)
T TIGR00580 500 GKQVAVLVPTTLLAQQHFETFKERFAN---------------------------------FPVTIELLSRFRSAKEQNEI 546 (926)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhcc---------------------------------CCcEEEEEeccccHHHHHHH
Confidence 679999999999999998888765321 12346788999999999999
Q ss_pred HHHHhCCCccEEEecc-ccccccCCCCcEEEEe
Q 000756 813 EDLFGDGHVQVLVSTA-TLAWGVNLPAHTVIIK 844 (1300)
Q Consensus 813 e~~F~~g~i~VLVaT~-tla~GVdlPav~vVI~ 844 (1300)
.+.+++|.++|+|+|. .+...+.+..+.+||-
T Consensus 547 ~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 547 LKELASGKIDILIGTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred HHHHHcCCceEEEchHHHhhCCCCcccCCEEEe
Confidence 9999999999999996 4445677888877773
No 455
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=81.63 E-value=3.2 Score=48.54 Aligned_cols=45 Identities=16% Similarity=0.118 Sum_probs=28.7
Q ss_pred CCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcH
Q 000756 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMK 560 (1300)
Q Consensus 511 ~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~k 560 (1300)
+.-+.|+||+|+|||..++..++....... .| ..+.+++||.---
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~--~g---g~~~~vvYIdtE~ 140 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPRE--MG---GGNGKVAYIDTEG 140 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchh--hc---CCCCeEEEEEcCC
Confidence 466889999999999988765554322110 01 0134899997544
No 456
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=81.33 E-value=13 Score=43.65 Aligned_cols=51 Identities=12% Similarity=0.196 Sum_probs=30.9
Q ss_pred HHHhhcCCCcccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEEcc
Q 000756 610 IITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSA 668 (1300)
Q Consensus 610 ~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LSA 668 (1300)
.+.+.....+.....+++|||++|.|... ....+++.++..+ +..+|++|.
T Consensus 111 ~i~~~l~~~p~~~~~kVvII~~ae~m~~~-------aaNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 111 EIKRFLSRPPLEAPRKVVVIEDAETMNEA-------AANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred HHHHHHccCcccCCceEEEEEchhhcCHH-------HHHHHHHHHhCCC-CCeEEEEEC
Confidence 34444333345667899999999998632 1223455556655 666666554
No 457
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=81.23 E-value=2.1 Score=48.80 Aligned_cols=85 Identities=20% Similarity=0.330 Sum_probs=52.6
Q ss_pred CeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcccCCcEEEEEeCCCccc
Q 000756 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLT 591 (1300)
Q Consensus 512 ~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~~gi~V~~ltGd~~~~ 591 (1300)
.-+=|++|-|||||.+++.++...... +.+++||----+|=-+....+....
T Consensus 61 ~ItEiyG~~gsGKT~lal~~~~~aq~~-----------g~~a~fIDtE~~l~p~r~~~l~~~~----------------- 112 (279)
T COG0468 61 RITEIYGPESSGKTTLALQLVANAQKP-----------GGKAAFIDTEHALDPERAKQLGVDL----------------- 112 (279)
T ss_pred eEEEEecCCCcchhhHHHHHHHHhhcC-----------CCeEEEEeCCCCCCHHHHHHHHHhh-----------------
Confidence 344589999999999998888766543 3378888766655544444332211
Q ss_pred hhhhccceEEEECcchHH-------HHHhhcCCCcccccccEEEEecccc
Q 000756 592 RQQIEETQIIVTTPEKWD-------IITRKSGDRTYTQLVKLLIIDEIHL 634 (1300)
Q Consensus 592 ~~~~~~~~IIV~TPekld-------~l~r~~~~~~~l~~v~liIiDEaH~ 634 (1300)
..+++|..|...+ .+.+... +.+++||||=+=.
T Consensus 113 -----~d~l~v~~~~~~e~q~~i~~~~~~~~~-----~~i~LvVVDSvaa 152 (279)
T COG0468 113 -----LDNLLVSQPDTGEQQLEIAEKLARSGA-----EKIDLLVVDSVAA 152 (279)
T ss_pred -----hcceeEecCCCHHHHHHHHHHHHHhcc-----CCCCEEEEecCcc
Confidence 1346677665542 2222211 1689999997744
No 458
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=81.17 E-value=9.3 Score=43.86 Aligned_cols=80 Identities=14% Similarity=0.144 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHH-HHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcc
Q 000756 497 NRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQ-QLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ 575 (1300)
Q Consensus 497 n~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~-~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~ 575 (1300)
+..|-+.|+..+..+-.+++.|+.|.|||++.+...+. ...+.-. |.-.....+++||.---. -.++.++++..+.
T Consensus 75 rs~~P~lId~~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lf--G~~v~epGkvlyvslEl~-re~~L~Rl~~v~a 151 (402)
T COG3598 75 RSNSPQLIDEFFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLF--GNKVKEPGKVLYVSLELY-REDILERLEPVRA 151 (402)
T ss_pred cccChhhhhHHhhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHh--cccccCCCeEEEEEeccC-hHHHHHHHHHHHH
Confidence 44577788888888778899999999999877543332 2222111 111234557888753211 1234444554444
Q ss_pred cCCc
Q 000756 576 MYDV 579 (1300)
Q Consensus 576 ~~gi 579 (1300)
.+|+
T Consensus 152 ~mgL 155 (402)
T COG3598 152 RMGL 155 (402)
T ss_pred HcCC
Confidence 4444
No 459
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=81.16 E-value=1.5 Score=54.28 Aligned_cols=49 Identities=27% Similarity=0.405 Sum_probs=36.0
Q ss_pred CeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhh
Q 000756 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (1300)
Q Consensus 512 ~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~ 573 (1300)
.++++.||||||||..+.+|.+-. . +.-+|++=|-.+|.......+++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~---~----------~~s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN---Y----------PGSMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh---c----------cCCEEEEECCCcHHHHHHHHHHHC
Confidence 479999999999999988776522 1 114888999988887666555443
No 460
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=81.08 E-value=0.97 Score=50.14 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=17.4
Q ss_pred EEeccccccccCCCCcEEEEe
Q 000756 824 LVSTATLAWGVNLPAHTVIIK 844 (1300)
Q Consensus 824 LVaT~tla~GVdlPav~vVI~ 844 (1300)
-+.|-.-++|...+.+.+++.
T Consensus 184 ~~~T~~e~qG~tf~~V~l~~~ 204 (234)
T PF01443_consen 184 RVFTVHESQGLTFDNVTLVLL 204 (234)
T ss_pred ceechHHcceEEeCCEEEEEC
Confidence 577878889999999888775
No 461
>PRK09087 hypothetical protein; Validated
Probab=80.95 E-value=4.8 Score=44.72 Aligned_cols=17 Identities=41% Similarity=0.778 Sum_probs=14.9
Q ss_pred eEEEEccCCCccHHHHH
Q 000756 513 NILLCAPTGAGKTNVAV 529 (1300)
Q Consensus 513 nvLi~APTGsGKT~va~ 529 (1300)
.++++||+|||||....
T Consensus 46 ~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 46 VVVLAGPVGSGKTHLAS 62 (226)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 49999999999998664
No 462
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=80.87 E-value=1.2 Score=52.34 Aligned_cols=20 Identities=20% Similarity=0.137 Sum_probs=16.2
Q ss_pred CeEEEEccCCCccHHHHHHH
Q 000756 512 DNILLCAPTGAGKTNVAVLT 531 (1300)
Q Consensus 512 ~nvLi~APTGsGKT~va~l~ 531 (1300)
.-+++.+|.|+|||+.+...
T Consensus 149 lgllL~GPPGcGKTllArai 168 (413)
T PLN00020 149 LILGIWGGKGQGKSFQCELV 168 (413)
T ss_pred eEEEeeCCCCCCHHHHHHHH
Confidence 34789999999999987543
No 463
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=80.83 E-value=2.6 Score=47.04 Aligned_cols=50 Identities=18% Similarity=0.262 Sum_probs=33.4
Q ss_pred cCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHH
Q 000756 509 SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1300)
Q Consensus 509 ~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~ 570 (1300)
..+..+++.+|+|+|||+.+...+...+.. +.+++|++..- -..+..+.+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~-----------g~~~~yi~~e~-~~~~~~~~~ 71 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQN-----------GYSVSYVSTQL-TTTEFIKQM 71 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhC-----------CCcEEEEeCCC-CHHHHHHHH
Confidence 345689999999999999876666554432 24688888543 234444444
No 464
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=80.80 E-value=2.5 Score=50.42 Aligned_cols=27 Identities=33% Similarity=0.388 Sum_probs=20.1
Q ss_pred CCCeEEEEccCCCccHHHHHHHHHHHHH
Q 000756 510 SADNILLCAPTGAGKTNVAVLTILQQLA 537 (1300)
Q Consensus 510 ~~~nvLi~APTGsGKT~va~l~il~~l~ 537 (1300)
.++.++|.||+|+|||+.+.. |.+.+.
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~-i~~~I~ 193 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQK-IAQAIT 193 (415)
T ss_pred CCCEEEEECCCCCChhHHHHH-HHHhhc
Confidence 457799999999999986544 445443
No 465
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=80.67 E-value=1 Score=54.27 Aligned_cols=56 Identities=21% Similarity=0.170 Sum_probs=37.6
Q ss_pred eEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcccCCcEEEEEe
Q 000756 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELS 585 (1300)
Q Consensus 513 nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~~gi~V~~lt 585 (1300)
+++++||||||||..+++|-+... +..+|++=|--++........++ .|-+|..+.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~-------------~~s~vv~D~Kge~~~~t~~~r~~----~G~~V~v~n 56 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW-------------PGSVVVLDPKGENFELTSEHRRA----LGRKVFVFD 56 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC-------------CCCEEEEccchhHHHHHHHHHHH----cCCeEEEEc
Confidence 479999999999998877654321 12588899998888665544432 244454443
No 466
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=80.60 E-value=2.9 Score=47.49 Aligned_cols=30 Identities=23% Similarity=0.482 Sum_probs=22.1
Q ss_pred CCCeEEEEccCCCccHHHHHHHHHHHHHhcc
Q 000756 510 SADNILLCAPTGAGKTNVAVLTILQQLALNR 540 (1300)
Q Consensus 510 ~~~nvLi~APTGsGKT~va~l~il~~l~~~~ 540 (1300)
.+.=+||.||||||||+.. .+|+.++.++.
T Consensus 124 ~~GLILVTGpTGSGKSTTl-AamId~iN~~~ 153 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTL-AAMIDYINKHK 153 (353)
T ss_pred CCceEEEeCCCCCcHHHHH-HHHHHHHhccC
Confidence 3456899999999998753 46677777653
No 467
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=80.25 E-value=2.4 Score=47.26 Aligned_cols=30 Identities=27% Similarity=0.417 Sum_probs=20.9
Q ss_pred HHHcCCCeEEEEccCCCccHHHHHHHHHHHH
Q 000756 506 SALSSADNILLCAPTGAGKTNVAVLTILQQL 536 (1300)
Q Consensus 506 ~~l~~~~nvLi~APTGsGKT~va~l~il~~l 536 (1300)
.++...-+++|+||+|||||+.. +.++..+
T Consensus 8 ~l~~~~fr~viIG~sGSGKT~li-~~lL~~~ 37 (241)
T PF04665_consen 8 SLLKDPFRMVIIGKSGSGKTTLI-KSLLYYL 37 (241)
T ss_pred HhcCCCceEEEECCCCCCHHHHH-HHHHHhh
Confidence 34455457999999999999854 3444443
No 468
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=80.22 E-value=3.5 Score=48.05 Aligned_cols=49 Identities=20% Similarity=0.262 Sum_probs=33.0
Q ss_pred CCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHH
Q 000756 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1300)
Q Consensus 511 ~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~ 570 (1300)
+..+-|++|+|||||+.++.++.+.... +..++||-|-.+|-...+..+
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~~-----------g~~~a~ID~e~~ld~~~a~~l 101 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQKQ-----------GGICAFIDAEHALDPEYAESL 101 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT-----------T-EEEEEESSS---HHHHHHT
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhcc-----------cceeEEecCcccchhhHHHhc
Confidence 3456799999999999988776654332 347999999888876655443
No 469
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=80.06 E-value=1.8 Score=54.95 Aligned_cols=59 Identities=24% Similarity=0.095 Sum_probs=42.1
Q ss_pred CCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcccCCcEEEEEe
Q 000756 510 SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELS 585 (1300)
Q Consensus 510 ~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~~gi~V~~lt 585 (1300)
+..+++++||||||||..+.+|-+-... .-+|++=|--++........++ .|-+|..+.
T Consensus 157 g~~hvLviapTgSGKg~g~VIPnLL~~~-------------~S~VV~DpKGEl~~~Ta~~R~~----~G~~V~vfd 215 (606)
T PRK13897 157 GFQHALLFAPTGSGKGVGFVIPNLLFWE-------------DSVVVHDIKLENYELTSGWREK----QGQKVFVWE 215 (606)
T ss_pred CCceEEEEcCCCCCcceEEehhhHHhCC-------------CCEEEEeCcHHHHHHHHHHHHH----CCCeEEEEe
Confidence 4467999999999999999888765431 1488899998988666544433 355665554
No 470
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=79.73 E-value=3.5 Score=55.28 Aligned_cols=42 Identities=24% Similarity=0.422 Sum_probs=32.3
Q ss_pred CCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHH
Q 000756 510 SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561 (1300)
Q Consensus 510 ~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~ka 561 (1300)
.+.|++|+||||||||+.....+.+.+..+ +.+|+++=|-++
T Consensus 474 ~n~n~~I~G~TGSGKS~l~~~li~q~~~~~----------~~~v~IiD~g~s 515 (893)
T TIGR03744 474 KNAHLLILGPTGAGKSATLTNLLMQVMAVH----------RPRLFIVEAGNS 515 (893)
T ss_pred CcccEEEECCCCCCHHHHHHHHHHHHHHhc----------CCEEEEEcCCCC
Confidence 367899999999999998776666665432 347888888765
No 471
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=79.72 E-value=6.8 Score=46.21 Aligned_cols=43 Identities=12% Similarity=0.125 Sum_probs=28.8
Q ss_pred cccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEEcc
Q 000756 619 TYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSA 668 (1300)
Q Consensus 619 ~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LSA 668 (1300)
......+++||||+|.+... ....+++.++..+....+|+.+.
T Consensus 106 ~~~~~~kvviI~~a~~~~~~-------a~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 106 GVESNKKVYIIEHADKMTAS-------AANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred CcccCceEEEeehHhhhCHH-------HHHHHHHHhcCCCCCceEEEEeC
Confidence 34567799999999998632 12345566677667777776544
No 472
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=79.62 E-value=1.8 Score=55.23 Aligned_cols=42 Identities=26% Similarity=0.457 Sum_probs=32.0
Q ss_pred cEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeEEEEcccCCC
Q 000756 625 KLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN 672 (1300)
Q Consensus 625 ~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~riV~LSATlpn 672 (1300)
=++|+|.-|++. +|.+...+.+++ ...++++.+|..|=+-|.
T Consensus 131 l~LVlDDyHli~---~~~l~~~l~fLl---~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 131 LYLVLDDYHLIS---DPALHEALRFLL---KHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred eEEEeccccccC---cccHHHHHHHHH---HhCCCCeEEEEEeccCCC
Confidence 489999999987 445666555554 567889999999987663
No 473
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=79.57 E-value=5.8 Score=48.97 Aligned_cols=50 Identities=20% Similarity=0.243 Sum_probs=30.1
Q ss_pred ccccCCCCChhhHhhc---CCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHH
Q 000756 475 KLIKISEMPEWAQPAF---KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVA 528 (1300)
Q Consensus 475 ~l~~i~~Lp~~~~~~f---~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va 528 (1300)
.+.++-.++..+.... ..+.+|..+++--+ .-..-+|+.||+|||||..|
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv----~PprGvLlHGPPGCGKT~lA 240 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGV----RPPRGVLLHGPPGCGKTSLA 240 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCC----CCCCceeeeCCCCccHHHHH
Confidence 3444555554433322 23566666665432 23345999999999999866
No 474
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=79.54 E-value=2.5 Score=46.19 Aligned_cols=38 Identities=24% Similarity=0.451 Sum_probs=28.4
Q ss_pred CCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCc
Q 000756 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (1300)
Q Consensus 511 ~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~ 559 (1300)
+.-+.|+||+|||||..++..+.+.... +.+++|+.--
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~-----------g~~v~yi~~e 49 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQ-----------GKKVVYIDTE 49 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC-----------CCeEEEEECC
Confidence 4568999999999999987766655432 2368888764
No 475
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=79.51 E-value=1.4 Score=43.31 Aligned_cols=18 Identities=33% Similarity=0.663 Sum_probs=15.2
Q ss_pred EEEEccCCCccHHHHHHH
Q 000756 514 ILLCAPTGAGKTNVAVLT 531 (1300)
Q Consensus 514 vLi~APTGsGKT~va~l~ 531 (1300)
++|+||+|||||+++-..
T Consensus 2 I~I~G~~gsGKST~a~~L 19 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKEL 19 (121)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 789999999999987543
No 476
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=79.43 E-value=2.3 Score=48.70 Aligned_cols=52 Identities=23% Similarity=0.201 Sum_probs=31.1
Q ss_pred CCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHH
Q 000756 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1300)
Q Consensus 511 ~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~ 570 (1300)
++-.++.||||||||+-..-..|....++.+.- -.=+=.|.+-|+.-+...+
T Consensus 273 GElTvlTGpTGsGKTTFlsEYsLDL~~QGVnTL--------wgSFEi~n~rla~~mL~Qy 324 (514)
T KOG2373|consen 273 GELTVLTGPTGSGKTTFLSEYSLDLFTQGVNTL--------WGSFEIPNKRLAHWMLVQY 324 (514)
T ss_pred CceEEEecCCCCCceeEehHhhHHHHhhhhhhe--------eeeeecchHHHHHHHHHHH
Confidence 456789999999999755445555555543221 1223346666666554443
No 477
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=79.38 E-value=3.8 Score=43.90 Aligned_cols=63 Identities=17% Similarity=0.255 Sum_probs=35.6
Q ss_pred CCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhc
Q 000756 510 SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1300)
Q Consensus 510 ~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l 574 (1300)
.++-+++.||+|+|||..+.-.+...+.... --|.....+.+|+|+..--. ..++.+++...+
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~-~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~ 93 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRP-FLGELPPRPGRVLYISLEDS-ESQIARRLRALL 93 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT----TT---------EEEEESSS--HHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCc-cCCcccccCceEEEEeccCC-HHHHHHHHHHHh
Confidence 3567899999999999988776666653211 00111124568999876555 556666666544
No 478
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=79.33 E-value=1.9 Score=46.91 Aligned_cols=30 Identities=33% Similarity=0.515 Sum_probs=21.3
Q ss_pred HHHHHHHHHcCCCeEEEEccCCCccHHHHH
Q 000756 500 QSRVYKSALSSADNILLCAPTGAGKTNVAV 529 (1300)
Q Consensus 500 Q~~~i~~~l~~~~nvLi~APTGsGKT~va~ 529 (1300)
-.+|+..+..++.|+|+.+|.|+|||..+-
T Consensus 11 aKrAL~iAAaG~h~lLl~GppGtGKTmlA~ 40 (206)
T PF01078_consen 11 AKRALEIAAAGGHHLLLIGPPGTGKTMLAR 40 (206)
T ss_dssp HHHHHHHHHHCC--EEEES-CCCTHHHHHH
T ss_pred HHHHHHHHHcCCCCeEEECCCCCCHHHHHH
Confidence 345666666778899999999999998763
No 479
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=79.25 E-value=3.2 Score=53.48 Aligned_cols=46 Identities=20% Similarity=0.314 Sum_probs=27.8
Q ss_pred ccEEEEecccccccCCh-------hHHHHHHHHHHHHHhhccCCeeEEEEccc
Q 000756 624 VKLLIIDEIHLLHDNRG-------PVLESIVARTVRQIETTKEHIRLVGLSAT 669 (1300)
Q Consensus 624 v~liIiDEaH~l~d~rg-------~~le~iv~rl~~~~~~~~~~~riV~LSAT 669 (1300)
..+|+|||+|.+...|+ ...+..+..++..+........++.+-||
T Consensus 245 P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaT 297 (644)
T PRK10733 245 PCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAAT 297 (644)
T ss_pred CcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEec
Confidence 36899999999865332 23344555555444444445556666666
No 480
>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A ....
Probab=78.84 E-value=1.9 Score=37.12 Aligned_cols=39 Identities=26% Similarity=0.294 Sum_probs=33.4
Q ss_pred ccccccCCCHHHHHHHHhCCC-cchhhccCChHHHhhhhc
Q 000756 1143 PLRQFNGIPNEILMKLEKKDF-AWERYYDLSPQELGELIR 1181 (1300)
Q Consensus 1143 pL~Q~p~i~~~~i~~le~~~~-~~~~l~~l~~~el~~ll~ 1181 (1300)
.|.++||+++..+++|.+.|+ +++++...+++++.++=+
T Consensus 6 ~L~~I~Gig~~~a~~L~~~G~~t~~~l~~a~~~~L~~i~G 45 (60)
T PF14520_consen 6 DLLSIPGIGPKRAEKLYEAGIKTLEDLANADPEELAEIPG 45 (60)
T ss_dssp HHHTSTTCHHHHHHHHHHTTCSSHHHHHTSHHHHHHTSTT
T ss_pred hhccCCCCCHHHHHHHHhcCCCcHHHHHcCCHHHHhcCCC
Confidence 367899999999999999998 899999998888776533
No 481
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=78.61 E-value=1.6 Score=37.93 Aligned_cols=17 Identities=35% Similarity=0.724 Sum_probs=15.0
Q ss_pred CeEEEEccCCCccHHHH
Q 000756 512 DNILLCAPTGAGKTNVA 528 (1300)
Q Consensus 512 ~nvLi~APTGsGKT~va 528 (1300)
+..+|.+|+|||||++.
T Consensus 24 ~~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLL 40 (62)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 47999999999999865
No 482
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=78.59 E-value=1.2 Score=43.90 Aligned_cols=18 Identities=33% Similarity=0.385 Sum_probs=15.2
Q ss_pred EEEEccCCCccHHHHHHH
Q 000756 514 ILLCAPTGAGKTNVAVLT 531 (1300)
Q Consensus 514 vLi~APTGsGKT~va~l~ 531 (1300)
++|+|++|||||+++-..
T Consensus 1 I~i~G~~GsGKtTia~~L 18 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKEL 18 (129)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHH
Confidence 689999999999987543
No 483
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=78.51 E-value=3.8 Score=45.06 Aligned_cols=42 Identities=24% Similarity=0.437 Sum_probs=30.1
Q ss_pred HHHHHcC----CCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEE
Q 000756 504 YKSALSS----ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYV 556 (1300)
Q Consensus 504 i~~~l~~----~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~i 556 (1300)
++.++.+ +..++|+||+|+|||..++..+...... +.+++|+
T Consensus 8 LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~-----------g~~v~yi 53 (218)
T cd01394 8 LDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQ-----------GKKVAYI 53 (218)
T ss_pred HHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhc-----------CCeEEEE
Confidence 4555543 4568899999999999887776665432 3468888
No 484
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=78.50 E-value=5.6 Score=52.57 Aligned_cols=18 Identities=33% Similarity=0.565 Sum_probs=15.7
Q ss_pred CeEEEEccCCCccHHHHH
Q 000756 512 DNILLCAPTGAGKTNVAV 529 (1300)
Q Consensus 512 ~nvLi~APTGsGKT~va~ 529 (1300)
..++++||+|+|||.++.
T Consensus 348 ~~lll~GppG~GKT~lAk 365 (775)
T TIGR00763 348 PILCLVGPPGVGKTSLGK 365 (775)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 469999999999998764
No 485
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=78.17 E-value=3 Score=47.48 Aligned_cols=24 Identities=38% Similarity=0.538 Sum_probs=19.8
Q ss_pred HcCCCeEEEEccCCCccHHHHHHH
Q 000756 508 LSSADNILLCAPTGAGKTNVAVLT 531 (1300)
Q Consensus 508 l~~~~nvLi~APTGsGKT~va~l~ 531 (1300)
+..+.++++.||+|+|||.++...
T Consensus 18 l~~g~~vLL~G~~GtGKT~lA~~l 41 (262)
T TIGR02640 18 LKSGYPVHLRGPAGTGKTTLAMHV 41 (262)
T ss_pred HhcCCeEEEEcCCCCCHHHHHHHH
Confidence 445678999999999999988543
No 486
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=78.15 E-value=1.8 Score=52.10 Aligned_cols=28 Identities=39% Similarity=0.622 Sum_probs=23.5
Q ss_pred HHHHHHHHcCCCeEEEEccCCCccHHHH
Q 000756 501 SRVYKSALSSADNILLCAPTGAGKTNVA 528 (1300)
Q Consensus 501 ~~~i~~~l~~~~nvLi~APTGsGKT~va 528 (1300)
.+++..+-.++.|+|+.||.|||||.++
T Consensus 188 KrAleiAAAGgHnLl~~GpPGtGKTmla 215 (490)
T COG0606 188 KRALEIAAAGGHNLLLVGPPGTGKTMLA 215 (490)
T ss_pred HHHHHHHHhcCCcEEEecCCCCchHHhh
Confidence 4566667788899999999999999865
No 487
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=78.04 E-value=4.3 Score=47.97 Aligned_cols=46 Identities=13% Similarity=0.080 Sum_probs=28.2
Q ss_pred CCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHH
Q 000756 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561 (1300)
Q Consensus 511 ~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~ka 561 (1300)
+.-+.++|++|+|||..++..+........ .| ..+.+++||.---.
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~--~g---g~~g~vlyIdtE~~ 168 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTCQLPLD--QG---GGEGKAMYIDTEGT 168 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHhhcchh--hC---CCCceEEEEECCCC
Confidence 466889999999999988655443322110 01 01237999865443
No 488
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=77.97 E-value=3.1 Score=45.35 Aligned_cols=28 Identities=21% Similarity=0.368 Sum_probs=19.1
Q ss_pred CCeEEEEccCCCccHHHHHHHHHHHHHh
Q 000756 511 ADNILLCAPTGAGKTNVAVLTILQQLAL 538 (1300)
Q Consensus 511 ~~nvLi~APTGsGKT~va~l~il~~l~~ 538 (1300)
..|++|+|+||||||......+...+..
T Consensus 38 ~~h~li~G~tgsGKS~~l~~ll~~l~~~ 65 (205)
T PF01580_consen 38 NPHLLIAGATGSGKSTLLRTLLLSLALT 65 (205)
T ss_dssp S-SEEEE--TTSSHHHHHHHHHHHHHTT
T ss_pred CceEEEEcCCCCCccHHHHHHHHHHHHH
Confidence 3489999999999999876655555543
No 489
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=77.81 E-value=9.5 Score=50.77 Aligned_cols=113 Identities=19% Similarity=0.186 Sum_probs=0.0
Q ss_pred cCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHH-----HHHHHHHhhhcccCCcEEEE
Q 000756 509 SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALV-----AEVVGNLSNRLQMYDVKVRE 583 (1300)
Q Consensus 509 ~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa-----~q~~~~~~~~l~~~gi~V~~ 583 (1300)
....|+++.||.|+|||.++...+.+..... ......+.+++.+-...-.+ -+...+++..+.
T Consensus 206 ~~~~n~lLvG~pGvGKTal~~~La~~i~~~~----v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~-------- 273 (852)
T TIGR03345 206 RRQNNPILTGEAGVGKTAVVEGLALRIAAGD----VPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVID-------- 273 (852)
T ss_pred CCcCceeEECCCCCCHHHHHHHHHHHHhhCC----CCccccCCeEEEeehhhhhcccccchHHHHHHHHHHH--------
Q ss_pred EeCCCccchhhhccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccCChhHHHHHHHHHHHHHhhccCCeeE
Q 000756 584 LSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRL 663 (1300)
Q Consensus 584 ltGd~~~~~~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~~~~ri 663 (1300)
.+.+.... -+++|||+|.+...++..-..-.+.++...-. ...+++
T Consensus 274 --------------------------e~~~~~~~-------~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~-~G~l~~ 319 (852)
T TIGR03345 274 --------------------------EVKASPQP-------IILFIDEAHTLIGAGGQAGQGDAANLLKPALA-RGELRT 319 (852)
T ss_pred --------------------------HHHhcCCC-------eEEEEeChHHhccCCCccccccHHHHhhHHhh-CCCeEE
Q ss_pred EEEc
Q 000756 664 VGLS 667 (1300)
Q Consensus 664 V~LS 667 (1300)
||-|
T Consensus 320 IgaT 323 (852)
T TIGR03345 320 IAAT 323 (852)
T ss_pred EEec
No 490
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=77.78 E-value=2.7 Score=47.81 Aligned_cols=41 Identities=22% Similarity=0.481 Sum_probs=27.9
Q ss_pred EEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHH
Q 000756 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALV 563 (1300)
Q Consensus 514 vLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa 563 (1300)
.+|.|||||||+- +++.+... ..++...-.|++|+|.+-.+
T Consensus 90 ~~VYGPTG~GKSq-----LlRNLis~----~lI~P~PETVfFItP~~~mI 130 (369)
T PF02456_consen 90 GVVYGPTGSGKSQ-----LLRNLISC----QLIQPPPETVFFITPQKDMI 130 (369)
T ss_pred EEEECCCCCCHHH-----HHHHhhhc----CcccCCCCceEEECCCCCCC
Confidence 5789999999995 34444432 23334455799999987654
No 491
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=77.41 E-value=4.1 Score=50.84 Aligned_cols=45 Identities=18% Similarity=0.353 Sum_probs=31.9
Q ss_pred cEEEEecccccccCC----hhHHHHHHHHHHHHHhhccCCeeEEEEccc
Q 000756 625 KLLIIDEIHLLHDNR----GPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (1300)
Q Consensus 625 ~liIiDEaH~l~d~r----g~~le~iv~rl~~~~~~~~~~~riV~LSAT 669 (1300)
..+.+||++-+...| +.+-+.+++.++..+......-.++.+-||
T Consensus 529 ~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAAT 577 (693)
T KOG0730|consen 529 CIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAAT 577 (693)
T ss_pred eEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEecc
Confidence 688999999986544 344566667666665555555678888899
No 492
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=77.21 E-value=35 Score=39.77 Aligned_cols=126 Identities=22% Similarity=0.253 Sum_probs=70.7
Q ss_pred eEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcC--cHHHHHHHHHHHhhhcccCCcEEEEEeCCCcc
Q 000756 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP--MKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590 (1300)
Q Consensus 513 nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP--~kaLa~q~~~~~~~~l~~~gi~V~~ltGd~~~ 590 (1300)
.++++|-.|+|||+..--.+.... + .+++|++.+- .||-|.++.+.|.+++ |+.|.....+.
T Consensus 141 Vil~vGVNG~GKTTTIaKLA~~l~-~----------~g~~VllaA~DTFRAaAiEQL~~w~er~---gv~vI~~~~G~-- 204 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKLAKYLK-Q----------QGKSVLLAAGDTFRAAAIEQLEVWGERL---GVPVISGKEGA-- 204 (340)
T ss_pred EEEEEecCCCchHhHHHHHHHHHH-H----------CCCeEEEEecchHHHHHHHHHHHHHHHh---CCeEEccCCCC--
Confidence 588999999999986543332222 2 2456666553 4999999999998875 45544321111
Q ss_pred chhhhccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccCChhHHHHHHHHHHHHHhhcc---CCeeEEEEc
Q 000756 591 TRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTK---EHIRLVGLS 667 (1300)
Q Consensus 591 ~~~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~~~---~~~riV~LS 667 (1300)
+. +-|+ +|.+..- ..+++++|++|=|-+||.... +-.=+.++.|.+...- +.--++.+-
T Consensus 205 Dp-----AaVa------fDAi~~A-----kar~~DvvliDTAGRLhnk~n--LM~EL~KI~rV~~k~~~~ap~e~llvlD 266 (340)
T COG0552 205 DP-----AAVA------FDAIQAA-----KARGIDVVLIDTAGRLHNKKN--LMDELKKIVRVIKKDDPDAPHEILLVLD 266 (340)
T ss_pred Cc-----HHHH------HHHHHHH-----HHcCCCEEEEeCcccccCchh--HHHHHHHHHHHhccccCCCCceEEEEEE
Confidence 11 1121 2333332 234689999999999886422 2222233333322211 122456668
Q ss_pred ccCCC
Q 000756 668 ATLPN 672 (1300)
Q Consensus 668 ATlpn 672 (1300)
||..+
T Consensus 267 AttGq 271 (340)
T COG0552 267 ATTGQ 271 (340)
T ss_pred cccCh
Confidence 98775
No 493
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=76.83 E-value=5.6 Score=51.82 Aligned_cols=67 Identities=13% Similarity=0.247 Sum_probs=54.9
Q ss_pred CCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCCCHHHHHHH
Q 000756 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLV 812 (1300)
Q Consensus 733 ~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~v 812 (1300)
++++++.+||..-+.++++.|...+...+.. ..-+. +|+.|+..+++.+
T Consensus 125 gkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~------------------------------~~~~~-yh~~l~~~ekee~ 173 (1187)
T COG1110 125 GKRVYIIVPTTTLVRQVYERLKKFAEDAGSL------------------------------DVLVV-YHSALPTKEKEEA 173 (1187)
T ss_pred CCeEEEEecCHHHHHHHHHHHHHHHhhcCCc------------------------------ceeee-eccccchHHHHHH
Confidence 6889999999999999999998876443211 01123 8999999999999
Q ss_pred HHHHhCCCccEEEecccc
Q 000756 813 EDLFGDGHVQVLVSTATL 830 (1300)
Q Consensus 813 e~~F~~g~i~VLVaT~tl 830 (1300)
++.|.+|..+|||+|+.+
T Consensus 174 le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 174 LERIESGDFDILITTSQF 191 (1187)
T ss_pred HHHHhcCCccEEEEeHHH
Confidence 999999999999999754
No 494
>PHA02244 ATPase-like protein
Probab=76.83 E-value=3.1 Score=49.25 Aligned_cols=28 Identities=18% Similarity=0.253 Sum_probs=22.2
Q ss_pred HHHHHHcCCCeEEEEccCCCccHHHHHH
Q 000756 503 VYKSALSSADNILLCAPTGAGKTNVAVL 530 (1300)
Q Consensus 503 ~i~~~l~~~~nvLi~APTGsGKT~va~l 530 (1300)
.+..++..+.++++.||||+|||.++..
T Consensus 111 ri~r~l~~~~PVLL~GppGtGKTtLA~a 138 (383)
T PHA02244 111 DIAKIVNANIPVFLKGGAGSGKNHIAEQ 138 (383)
T ss_pred HHHHHHhcCCCEEEECCCCCCHHHHHHH
Confidence 3345667788999999999999987743
No 495
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=76.80 E-value=1.6 Score=50.89 Aligned_cols=53 Identities=21% Similarity=0.227 Sum_probs=32.4
Q ss_pred cEEEEecccccccCChhHHHHHHHHHHHHHhh------ccCCeeEEEEcccCCChHHHHH
Q 000756 625 KLLIIDEIHLLHDNRGPVLESIVARTVRQIET------TKEHIRLVGLSATLPNYEDVAL 678 (1300)
Q Consensus 625 ~liIiDEaH~l~d~rg~~le~iv~rl~~~~~~------~~~~~riV~LSATlpn~~dva~ 678 (1300)
..|.|||++.+...|++.=..+.+.+..+... +....|++.|-|| ..+.|+.+
T Consensus 188 ~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgAT-NRP~DlDe 246 (386)
T KOG0737|consen 188 SIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGAT-NRPFDLDE 246 (386)
T ss_pred ceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCC-CCCccHHH
Confidence 57889999987765544434444444444332 3456689999999 23445543
No 496
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=76.64 E-value=2.8 Score=44.42 Aligned_cols=45 Identities=20% Similarity=0.278 Sum_probs=34.0
Q ss_pred EEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhh
Q 000756 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (1300)
Q Consensus 514 vLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~ 572 (1300)
++|.||+|||||..++..+.. . +.+++|++-.+++-.++.+++.+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~----~----------~~~~~y~at~~~~d~em~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE----L----------GGPVTYIATAEAFDDEMAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh----c----------CCCeEEEEccCcCCHHHHHHHHH
Confidence 689999999999988766543 1 23689999988887777666544
No 497
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=76.48 E-value=1.5 Score=44.38 Aligned_cols=16 Identities=50% Similarity=1.093 Sum_probs=14.1
Q ss_pred EEEEccCCCccHHHHH
Q 000756 514 ILLCAPTGAGKTNVAV 529 (1300)
Q Consensus 514 vLi~APTGsGKT~va~ 529 (1300)
+++|||+|||||+.+-
T Consensus 2 ii~~G~pgsGKSt~a~ 17 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAK 17 (143)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 7899999999998764
No 498
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=76.45 E-value=2.5 Score=54.24 Aligned_cols=60 Identities=18% Similarity=0.142 Sum_probs=40.7
Q ss_pred cCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHhhhcccCCcEEEEEe
Q 000756 509 SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELS 585 (1300)
Q Consensus 509 ~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~~~l~~~gi~V~~lt 585 (1300)
.+..+++++||||||||..+++|-+-.+. ..+|++=|--++........++ .|-+|..+.
T Consensus 137 ~~~~hvlviApTgSGKgvg~VIPnLL~~~-------------gS~VV~DpKGE~~~~Ta~~R~~----~G~~V~~Fn 196 (670)
T PRK13850 137 GEQPHSLVVAPTRAGKGVGVVIPTLLTFK-------------GSVIALDVKGELFELTSRARKA----SGDAVFKFA 196 (670)
T ss_pred CCCceEEEEecCCCCceeeehHhHHhcCC-------------CCEEEEeCCchHHHHHHHHHHh----CCCEEEEec
Confidence 34678999999999999999888654321 1488888888877655433322 355555443
No 499
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=76.16 E-value=4 Score=47.65 Aligned_cols=37 Identities=8% Similarity=0.211 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHH
Q 000756 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLT 531 (1300)
Q Consensus 495 ~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~ 531 (1300)
.|++--.+++-.++..++++++.||+|+|||..+...
T Consensus 48 ~f~~~~~~~vl~~l~~~~~ilL~G~pGtGKTtla~~l 84 (327)
T TIGR01650 48 LFDKATTKAICAGFAYDRRVMVQGYHGTGKSTHIEQI 84 (327)
T ss_pred cCCHHHHHHHHHHHhcCCcEEEEeCCCChHHHHHHHH
Confidence 3455555666667777788999999999999977543
No 500
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=75.85 E-value=3.6 Score=51.25 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=34.9
Q ss_pred CCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHHHHHHHHh
Q 000756 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (1300)
Q Consensus 511 ~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~q~~~~~~ 571 (1300)
+..++|+||+|||||+.++..+.+.+.+. +-+++|++-- +-..++.+++.
T Consensus 21 g~~~Li~G~pGsGKT~la~qfl~~g~~~~----------ge~~lyvs~e-E~~~~l~~~~~ 70 (484)
T TIGR02655 21 GRSTLVSGTSGTGKTLFSIQFLYNGIIHF----------DEPGVFVTFE-ESPQDIIKNAR 70 (484)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHhC----------CCCEEEEEEe-cCHHHHHHHHH
Confidence 46799999999999999988877766542 2258888753 43445544443
Done!