Query 000756
Match_columns 1300
No_of_seqs 589 out of 4120
Neff 7.5
Searched_HMMs 29240
Date Tue Mar 26 18:01:49 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000756.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_525-529//hhsearch_pdb/000756hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f92_B U5 small nuclear ribonu 1.0 1 1 1521.8 86.1 883 418-1300 2-884 (1724)
2 4f92_B U5 small nuclear ribonu 1.0 1 1 1174.9 83.1 804 474-1300 903-1722(1724)
3 2p6r_A Afuhel308 helicase; pro 1.0 1 1 778.8 47.3 652 482-1204 10-692 (702)
4 2va8_A SSO2462, SKI2-type heli 1.0 1 1 769.6 52.4 658 481-1200 14-715 (715)
5 2zj8_A DNA helicase, putative 1.0 1 1 768.3 56.1 657 481-1198 7-704 (720)
6 2q0z_X Protein Pro2281; SEC63, 1.0 1 1 515.5 30.6 304 991-1300 10-326 (339)
7 3im1_A Protein SNU246, PRE-mRN 1.0 1 1 502.7 32.1 305 990-1300 5-324 (328)
8 3l9o_A ATP-dependent RNA helic 1.0 1 1 425.1 35.5 396 492-918 181-628 (1108)
9 2xgj_A ATP-dependent RNA helic 1.0 1 1 418.5 38.2 386 492-917 84-529 (1010)
10 3i5x_A ATP-dependent RNA helic 1.0 1 1 397.3 39.1 377 474-905 71-466 (563)
No 1
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=1.00 E-value=1 Score=1521.84 Aligned_cols=883 Identities=66% Similarity=1.109 Sum_probs=854.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCC
Q ss_conf 77652002443222347753455410189996223678706872799999999998765347899933585208999999
Q 000756 418 LGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLN 497 (1300)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~gs~~~~~~~~eei~iP~~~~~~~~~~~~l~~i~~Lp~~~~~~f~g~~~ln 497 (1300)
.+|++++||+++.|.||+|+|+|+++.+|+||.|..+++|||++||++.+.|...++.++++++||+|++.+|+||++||
T Consensus 2 ~~p~~~~dl~~l~~~~~~~~~~~~~~~lp~~s~~~~~~~~eei~vp~~~~~~~~~~~~l~~i~~Lp~~~~~~f~g~~~ln 81 (1724)
T 4f92_B 2 LAPRQVLDLEDLVFTQGSHFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKTLN 81 (1724)
T ss_dssp CCCCCCCCHHHHSCTTGGGCCCCCCCCCCSCCCEEECSSEEEEEECCCCCCCCCSSCCCCBTTTSCGGGSTTCTTCSBCC
T ss_pred CCCCCEECHHHHCCCCCCCCCCCCCEECCCCCEECCCCCCCEEECCCCCCCCCCCCCCCCCHHHCCHHHHHHCCCCCCCC
T ss_conf 99610234766345332210247843089997630368961585488778999876776525765998887447899999
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999998189909998569996089999999999984269999998997199998573889999999996100147
Q 000756 498 RVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMY 577 (1300)
Q Consensus 498 ~iQs~~i~~~l~~~~nlLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiIiIaP~kaLv~q~~~~~~~~l~~~ 577 (1300)
++|+++++.++++++|+++|||||||||++|+++|++.+..+....+.....++++|||+|+||||+|+++.|++++..+
T Consensus 82 ~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~~~ 161 (1724)
T 4f92_B 82 RIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATY 161 (1724)
T ss_dssp HHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999997589939999688146999999999999986234344445799889998997999999999999777547
Q ss_pred CCEEEEEECCCCCCHHHHCCCEEEEECCCHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 82999992887434521056139997742189998314998654530089981431000587047999999999988620
Q 000756 578 DVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETT 657 (1300)
Q Consensus 578 gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~~~~v~lIIiDEvH~l~d~rg~~le~iv~rl~r~~~~~ 657 (1300)
|++|+.++||.+.+.+....++|+|||||+|+.++|++.+..+++.+++|||||+|+++|+||+++|.+++|+++.....
T Consensus 162 gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~lE~~l~rl~~~~~~~ 241 (1724)
T 4f92_B 162 GITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMT 241 (1724)
T ss_dssp TCCEEECCSSCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCCCCCCCCCEEEECHHHHHHHHCCCCCCHHHCCCCEEEEECCHHCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 98899997998887143589999998879999997588530445475889995554429956799999999999999737
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 69804999934478958899997101468559835996433531458641037646788987799999999871998099
Q 000756 658 KEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVL 737 (1300)
Q Consensus 658 ~~~~riV~LSATlpn~~dva~~L~~~~~~~~~~f~~~~rp~~l~~~~~~v~~~~~~~~~~~l~~~~~~~i~~~~~~~~vL 737 (1300)
+.++|+||||||+||++++++||++.+..++++|+.++||+|++++++++.......+...++..+++.+.+...++++|
T Consensus 242 ~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~L 321 (1724)
T 4f92_B 242 QEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVL 321 (1724)
T ss_dssp TCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEE
T ss_pred CCCCCEEEEECCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 99980999954569999999986788888869979997667317999656875414566778899999999975699689
Q ss_pred EEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCEEEECCCCCHHHHHHHHHHHH
Q ss_conf 99757478999999999974202312234345701399998532102620255320687388258999888999999970
Q 000756 738 IFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFG 817 (1300)
Q Consensus 738 VFv~sr~~~~~la~~L~~~~~~~~~l~~~l~~~~~~~e~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~ 817 (1300)
|||+||+.|+.+|..|.+.....+....+........+.+........+..|++++++||++|||||++.+|..+|++|+
T Consensus 322 VF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~ 401 (1724)
T 4f92_B 322 VFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFA 401 (1724)
T ss_dssp EECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCEEEECCCCCHHHHHHHHHHHH
T ss_conf 98788899999999999987645521221333305788877664024448899986457788759999999999999987
Q ss_pred CCCCCEEEECCCCCCCCCCCCCEEEEECCEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEEECCCCHHHHHHH
Q ss_conf 99962998353222434788708999523102699997544898899974201589999993389999079848999985
Q 000756 818 DGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSL 897 (1300)
Q Consensus 818 ~g~i~VLVaT~tla~GVnlPav~vVI~~t~~yd~~~g~~~~~S~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~l 897 (1300)
+|.++|||||+|||||||+|+++|||++++.|++..|++.++|+.+|+||+|||||+|+|..|++++++++++..+|.++
T Consensus 402 ~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~l 481 (1724)
T 4f92_B 402 DKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSL 481 (1724)
T ss_dssp TTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHH
T ss_pred CCCCEEEEECCHHHHHCCCCCCEEEEECCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHHH
T ss_conf 79974999842667138888706998288770476787563899999876401268888876479998350259999999
Q ss_pred HCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 20898733100476799999998825525999999999766879987209765589832113420245588999999999
Q 000756 898 MNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAAT 977 (1300)
Q Consensus 898 l~~~lpiES~l~~~l~d~lnaEI~~g~i~~~~d~i~wL~~t~ly~rl~~nP~~Y~~~~~~~~~d~~l~~~~~~li~~a~~ 977 (1300)
++.+.||||++...+.|+||+||++|++.+.+++++||++||+|+||.+||.+|++..++...|+.+.+++.+++++|+.
T Consensus 482 l~~~~pieS~l~~~l~d~L~aeI~~g~i~~~~~a~~~l~~T~~~~r~~~~p~~y~~~~~~~~~d~~l~~~~~~~i~~~~~ 561 (1724)
T 4f92_B 482 LNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAAL 561 (1724)
T ss_dssp TTTCSCCCCCTTTTHHHHHHHHHHHTSCCBHHHHHHHHHHSHHHHHHHHCTTTTTCCHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HCCCCCCHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 74998510203310788999999870247899999999643788775327465436710012363789999999999999
Q ss_pred HHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99777873212568820104332211103443100999986208888967899884077221338579047999999870
Q 000756 978 ILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLD 1057 (1300)
Q Consensus 978 ~L~~~~li~~~~~~~~~~~T~lG~ias~~yI~~~T~~~f~~~l~~~~~~~~il~ils~s~EF~~i~vR~~E~~eL~~L~~ 1057 (1300)
.|++++||.+++++|.+.+|++||+||+|||++.||..|+..+++.+++.++|+++|.|.||+.+++|++|+.+|.+|.+
T Consensus 562 ~L~~~~li~~d~~~~~~~~T~lGr~~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~is~s~ef~~i~~R~~E~~~l~~l~~ 641 (1724)
T 4f92_B 562 MLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKLELQKLLE 641 (1724)
T ss_dssp HHHHTTSEEECTTTCBEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGTTCCCCGGGHHHHHHHHH
T ss_pred HHHHCCCEEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHH
T ss_conf 99887990140677864344487999983689999999986358889999999997577521667707789999999982
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
Q ss_conf 29987779999715899999999982757798730121999999499999999999998071999999999999997312
Q 000756 1058 RVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRM 1137 (1300)
Q Consensus 1058 ~~p~pvk~~~~~~~~Kv~iLLqa~isr~~l~~~~L~~D~~~I~q~a~RLlral~eI~l~~~w~~~a~~~l~L~k~i~q~~ 1137 (1300)
++|+|+++++++++.|+|+|||||||+.++++++|.+|+.||.|+|+||+||++|||+.+||+..+.++++|||||++|+
T Consensus 642 ~~~~~~~~~~~~~~~Kv~~Llq~~i~~~~~~~~~l~~D~~~i~~~a~ri~ra~~ei~~~~~~~~~~~~~l~l~k~i~~~~ 721 (1724)
T 4f92_B 642 RVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMVYVTQLAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRM 721 (1724)
T ss_dssp HSSSCCCSCCSSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_conf 39977688788858999999999976998665428989999999999999999999998598999999999999998288
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEEEEEEECCCEEEEEE
Q ss_conf 57743332346889899999981798511001499588720102871047999998219932699999640582699999
Q 000756 1138 WSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVEL 1217 (1300)
Q Consensus 1138 W~~~spL~Qlp~i~~~~i~~le~~~~~~~~l~~l~~~e~~~ll~~~~~~~~i~~~~~~~P~l~i~~~vqpit~~~l~v~l 1217 (1300)
|++++||+|||+++.+.++++++++++|+++.+|++.++++++++|++|+.|++++++||++++++++||+|+++++|++
T Consensus 722 w~~~~~L~q~~~i~~~~~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~g~~i~~~~~~~P~~~~~~~~~p~~~~~~~~~~ 801 (1724)
T 4f92_B 722 WQSMCPLRQFRKLPEEVVKKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKVEL 801 (1724)
T ss_dssp CTTSCGGGGSTTSCHHHHHHHHTSSCCGGGGGGCCHHHHHHHHTCSTTHHHHHHHHTTSCCEEEEEEEEESSSSEEEEEE
T ss_pred CCCCCCEECCCCCCHHHHHHHHHCCCCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCEEEEEE
T ss_conf 99888330689999999999982699999997289889999977945799999999978985389999716775599999
Q ss_pred EEECCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEECCCCCCCEEEEEEEECCCCCCCEEE
Q ss_conf 99329966888765445689999818998599986787531133530799999726899996399999805754653689
Q 000756 1218 TITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGVLVCV 1297 (1300)
Q Consensus 1218 ~i~p~~~~~~~vh~~~e~wwi~v~D~~~~~il~~~~~~l~~~~~~~~~~i~F~vP~~~p~~~~~~i~viSD~ylg~d~~~ 1297 (1300)
+++|+|.|++++||..++|||||+|++++.|+|+++|.+++++..++|.++|++|+++|+||+|+|+++||+|+||+.++
T Consensus 802 ~~~~~~~w~~~~h~~~~~~~~~v~d~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~p~~~~i~~~sd~w~~~~~~~ 881 (1724)
T 4f92_B 802 TITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFEPLPPQYFIRVVSDRWLSCETQL 881 (1724)
T ss_dssp EEEECSCCCTTTTTTEEEEEEEEECTTSCBEEEEEEEEEEGGGTTSCEEEEEEEECCSSCCSEEEEEEEESSSTTCEEEE
T ss_pred EEEECCCCCHHHCCCCEEEEEEEEECCCCEEEEEEEEEEEEECCCCCEEEEEEEECCCCCCCEEEEEEEECCCCCCCCEE
T ss_conf 98644635532257730599999946988388888998630026774599999988889998189999974010777346
Q ss_pred ECC
Q ss_conf 879
Q 000756 1298 WLN 1300 (1300)
Q Consensus 1298 ~i~ 1300 (1300)
+|+
T Consensus 882 ~~~ 884 (1724)
T 4f92_B 882 PVS 884 (1724)
T ss_dssp EEE
T ss_pred EEC
T ss_conf 542
No 2
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=1.00 E-value=1 Score=1174.94 Aligned_cols=804 Identities=29% Similarity=0.475 Sum_probs=738.1
Q ss_pred CCCCCCCCCC-HHHHHHC-CCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 7653478999-3358520-8999999999999999981899099985699960899999999999842699999989971
Q 000756 474 EKLIKISEMP-EWAQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNY 551 (1300)
Q Consensus 474 ~~l~~i~~Lp-~~~~~~f-~g~~~ln~iQs~~i~~~l~~~~nlLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~ 551 (1300)
-+++|++.|+ +.+...| .+|++|||+|+++|+.++++++|++++||||||||++|.++|++.+.... +.
T Consensus 903 l~plp~s~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~---------~~ 973 (1724)
T 4f92_B 903 LQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSS---------EG 973 (1724)
T ss_dssp CCCCBGGGSCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT---------TC
T ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC---------CC
T ss_conf 887885544688899999726789997999999999668996899937988746999999999998589---------98
Q ss_pred EEEEECCCHHHHHHHHHHHHHHCC-CCCCEEEEEECCCCCCHHHHCCCEEEEECCCHHHHHHHHCCCCCCCCCCCEEEEE
Q ss_conf 999985738899999999961001-4782999992887434521056139997742189998314998654530089981
Q 000756 552 KIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIID 630 (1300)
Q Consensus 552 kiIiIaP~kaLv~q~~~~~~~~l~-~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~~~~v~lIIiD 630 (1300)
++||++|+|+||.|+++.|+++++ .+|++|+.++||.....+....++|+|||||+|+.++|++.....++.+++||+|
T Consensus 974 kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViD 1053 (1724)
T 4f92_B 974 RCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVD 1053 (1724)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEEC
T ss_pred EEEEECCHHHHHHHHHHHHHHHHCHHCCCEEEEEECCCCCCHHHCCCCCEEEECHHHHHHHHHCCCCCCCCCEEEEEEEE
T ss_conf 79998682999999999999984422097899997997812111589999998879999998384446413523189701
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCEEEEEEEECC
Q ss_conf 43100058704799999999998862069804999934478958899997101468559835996433531458641037
Q 000756 631 EIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVK 710 (1300)
Q Consensus 631 EvH~l~d~rg~~le~iv~rl~r~~~~~~~~~riV~LSATlpn~~dva~~L~~~~~~~~~~f~~~~rp~~l~~~~~~v~~~ 710 (1300)
|+|++++.||+++|.+++++.+.....+.++|+|+||||++|+.++++||++.+ .+++.|.+++||+|++.++.++...
T Consensus 1054 E~H~l~d~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~~dla~WL~~~~-~~~~~~~~~~RPvpL~~~i~~~~~~ 1132 (1724)
T 4f92_B 1054 EVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSA-TSTFNFHPNVRPVPLELHIQGFNIS 1132 (1724)
T ss_dssp CGGGGGSTTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTHHHHHHHHTCCS-TTEEECCGGGCSSCEEEEEEEECCC
T ss_pred CHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCC-CCEEEECCCCCCCCEEEEEEECCCC
T ss_conf 011047878763999999999998636888639999288899999999867998-7758948888888708999803677
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHH
Q ss_conf 64678898779999999987199809999757478999999999974202312234345701399998532102620255
Q 000756 711 KPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLK 790 (1300)
Q Consensus 711 ~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~la~~L~~~~~~~~~l~~~l~~~~~~~e~l~~~~~~~~~~~L~ 790 (1300)
....++..+++..+..+.....++++||||+||+.|..+|..|............++.. ..+.+........+..|+
T Consensus 1133 ~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~---~~~~l~~~l~~~~d~~L~ 1209 (1724)
T 4f92_B 1133 HTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHC---TEKDLIPYLEKLSDSTLK 1209 (1724)
T ss_dssp SHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCS---CHHHHHHHHTTCCCHHHH
T ss_pred CCHHHHHHHCCHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHCC---CHHHHHHHHHHCCCHHHH
T ss_conf 71666653201499999985379972155788899999999999887626430222013---399999998641428899
Q ss_pred HHHCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCEEEEECCEECCCCCCCCCCCCHHHHHHHHHC
Q ss_conf 32068738825899988899999997099962998353222434788708999523102699997544898899974201
Q 000756 791 DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGR 870 (1300)
Q Consensus 791 ~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVnlPav~vVI~~t~~yd~~~g~~~~~S~~~~~Qr~GR 870 (1300)
+++.+||++|||||++.+|..++++|++|.++|||||++++||||+|+++|||.+++.|++..+++.++++.+|+||+||
T Consensus 1210 ~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GR 1289 (1724)
T 4f92_B 1210 ETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGH 1289 (1724)
T ss_dssp HHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTT
T ss_pred HHHHCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHCC
T ss_conf 98747889977999999999999999779984999886997578988618999567113675556677999999976151
Q ss_pred CCCCCCCCCEEEEEEECCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 58999999338999907984899998520898733100476799999998825525999999999766879987209765
Q 000756 871 AGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPAL 950 (1300)
Q Consensus 871 AGR~g~d~~G~~iil~~~~~~~~y~~ll~~~lpiES~l~~~l~d~lnaEI~~g~i~~~~d~i~wL~~t~ly~rl~~nP~~ 950 (1300)
|||+|+|..|.++++|...+..+|.++++.++|+||++...+.+++|+||+.|++.+.+++++||+|||||+|+.+||.+
T Consensus 1290 AGR~g~d~~G~avll~~~~~~~~~~~ll~~~~pveS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l~~Tfl~~r~~~nP~~ 1369 (1724)
T 4f92_B 1290 ANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNY 1369 (1724)
T ss_dssp BCCTTTCSCEEEEEEEEGGGHHHHHHHTTSCBCCCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHHTTSSHHHHHHHSGGG
T ss_pred CCCCCCCCCEEEEEEECCHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 35788788628999965457789999737997035454411178999999854348899999999730799987307320
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHH
Q ss_conf 58983211342024558899999999999777873212568820104332211103443100999986208888967899
Q 000756 951 YGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELC 1030 (1300)
Q Consensus 951 Y~~~~~~~~~d~~l~~~~~~li~~a~~~L~~~~li~~~~~~~~~~~T~lG~ias~~yI~~~T~~~f~~~l~~~~~~~~il 1030 (1300)
|++... +...++.++.+++++++..|.+++||..++ .+.+.+|++|+|||+|||++.|+..|...+++.++..++|
T Consensus 1370 y~l~~~---~~~~~~~~l~~lv~~~l~~L~~~~~I~~~~-~~~l~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~L 1445 (1724)
T 4f92_B 1370 YNLQGI---SHRHLSDHLSELVEQTLSDLEQSKCISIED-EMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLI 1445 (1724)
T ss_dssp TTCSCC---SHHHHHHHHHHHHHHHHHHHHHTTSEEEET-TTEEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHH
T ss_pred CCCCCC---CHHHHHHHHHHHHHHHHHHHHHCCCEEECC-CCCEEECHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHH
T ss_conf 256653---355678999999999999999888999869-9878666899999997789999999998544369888899
Q ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 88407722133857904799999987029987779-99971589999999998275779873012199999949999999
Q 000756 1031 RLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKE-SLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRA 1109 (1300)
Q Consensus 1031 ~ils~s~EF~~i~vR~~E~~eL~~L~~~~p~pvk~-~~~~~~~Kv~iLLqa~isr~~l~~~~L~~D~~~I~q~a~RLlra 1109 (1300)
+++|.|.||..+++|++|+..+.+|..++|+++.+ .++.|+.|+++|||||++|++++ ..|..|+..|++++.||++|
T Consensus 1446 ~il~~a~ef~~i~~R~~E~~~l~~l~~~~~~~~~~~~~~~~~~K~~lLlqa~~~r~~l~-~~~~~D~~~i~~~~~rl~~a 1524 (1724)
T 4f92_B 1446 EIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLS-AELQSDTEEILSKAIRLIQA 1524 (1724)
T ss_dssp HHHHTSGGGTTCCCCTTHHHHHHHHHHHSSSCCSSCCTTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHHHHHHHH
T ss_conf 88407845456643606899999998638977774445788999999999997788677-67999999999999999999
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCC-CCHHHCCCCHHHHHHHHCC-CCCHH
Q ss_conf 999999807199999999999999731257743332346889899999981798-5110014995887201028-71047
Q 000756 1110 LFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF-AWERYYDLSPQELGELIRF-PKMGR 1187 (1300)
Q Consensus 1110 l~eI~l~~~w~~~a~~~l~L~k~i~q~~W~~~spL~Qlp~i~~~~i~~le~~~~-~~~~l~~l~~~e~~~ll~~-~~~~~ 1187 (1300)
|+++|...||+..+..+|+|+|||.|++|+..+||+|+|||+...+++|..+|+ ++.++.+++++++..+++. ++++.
T Consensus 1525 ~~d~~~~~g~~~~~~~~~~l~q~l~~~~w~~~~~L~qip~i~~~~ar~l~~~gi~t~~dl~~~~~~~~~~ll~~~~~~~~ 1604 (1724)
T 4f92_B 1525 CVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIA 1604 (1724)
T ss_dssp HHHHHHHTTBHHHHHHHHHHHHHHHTTCCTTSCGGGGSTTCCHHHHHHHHHHTCCSHHHHHSSCHHHHTTSSCCCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHCCCHHHHH
T ss_conf 99999978988999999999999994788677687347998989999999779999999985899999999779968999
Q ss_pred HHHHHHHCCCCEEEEEEEEEEC----CCEEEEEEEEECCCCCCCCCCCCCCC------EEEEEECCCCCEEEEEEEEEEE
Q ss_conf 9999982199326999996405----82699999993299668887654456------8999981899859998678753
Q 000756 1188 TLHKFVHQFPKLILAAHVQPIT----RTVLKVELTITPDFLWDDKVHGYVEP------FWVIVEDNDGEYILHHEYFMLK 1257 (1300)
Q Consensus 1188 ~i~~~~~~~P~l~i~~~vqpit----~~~l~v~l~i~p~~~~~~~vh~~~e~------wwi~v~D~~~~~il~~~~~~l~ 1257 (1300)
+|.++|++||++++++.+++.. +..+.+.++++++...+..+++|.+| ||++|+|++++.++.+++++++
T Consensus 1605 ~i~~~~~~~P~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~p~~k~e~w~~vvg~~~~~~l~~~kr~~~~ 1684 (1724)
T 4f92_B 1605 DVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQ 1684 (1724)
T ss_dssp HHHHHHHHSCCEEEEEEEETSSSCCTTSEEEEEEEEEESSCCCSCCCCTTSCSCCCCCEEEEEEETTTTEEEEEEEECCS
T ss_pred HHHHHHHHCCCEEEEEEEECCCCCCCCCEEEEEEEEEECCCCCCEEECCCCCCCCCCCEEEEEEECCCCEEEEEEEEECC
T ss_conf 99999986896389999805731347975999999985477787065678998872277999998899949999988147
Q ss_pred ECCCCCEEEEEEEEECCCCCCCEEEEEEEECCCCCCCEEEECC
Q ss_conf 1133530799999726899996399999805754653689879
Q 000756 1258 KQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGVLVCVWLN 1300 (1300)
Q Consensus 1258 ~~~~~~~~~i~F~vP~~~p~~~~~~i~viSD~ylg~d~~~~i~ 1300 (1300)
+ ...+.++|++| ++|.++|.++++||+|+|||++..++
T Consensus 1685 ~---~~~~~l~f~~p--~~g~~~~~~~~~~d~y~g~d~~~~~~ 1722 (1724)
T 4f92_B 1685 Q---KAKVKLDFVAP--ATGAHNYTLYFMSDAYMGCDQEYKFS 1722 (1724)
T ss_dssp S---EEEEEEEEECC--SSSCEEEEEEEEESSCSSCCEEEEEE
T ss_pred C---CCEEEEEEEEC--CCCCEEEEEEEEECCCCCCCEEEEEE
T ss_conf 7---86389999937--99954699999835734556368874
No 3
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=1.00 E-value=1 Score=778.84 Aligned_cols=652 Identities=25% Similarity=0.366 Sum_probs=545.1
Q ss_pred CCHHHHHHC--CCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCC
Q ss_conf 993358520--899999999999999998189909998569996089999999999984269999998997199998573
Q 000756 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (1300)
Q Consensus 482 Lp~~~~~~f--~g~~~ln~iQs~~i~~~l~~~~nlLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiIiIaP~ 559 (1300)
||+++...| .||+.|+++|.++++.++ .++|++++||||||||+++++++++.+.. +.+++|++|+
T Consensus 10 l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~-~~~~~lv~apTGsGKT~~~~l~il~~~~~-----------~~~~l~i~P~ 77 (702)
T 2p6r_A 10 ISSYAVGILKEEGIEELFPPQAEAVEKVF-SGKNLLLAMPTAAGKTLLAEMAMVREAIK-----------GGKSLYVVPL 77 (702)
T ss_dssp HHHHHHHHHHCC---CCCCCCHHHHHHHT-TCSCEEEECSSHHHHHHHHHHHHHHHHHT-----------TCCEEEEESS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHHHHHHHH-----------CCCEEEEECC
T ss_conf 59999999986899889999999999983-89968998689617999999999999986-----------8959999370
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHCCCEEEEECCCHHHHHHHHCCCCCCCCCCCEEEEECCCCCCC-C
Q ss_conf 889999999996100147829999928874345210561399977421899983149986545300899814310005-8
Q 000756 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-N 638 (1300)
Q Consensus 560 kaLv~q~~~~~~~~l~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~~~~v~lIIiDEvH~l~d-~ 638 (1300)
++|+.|++++|+ .+..+|++|+.++|+..........++|+|+|||+|+.+.++.. .+++.+++||+||+|++.+ .
T Consensus 78 r~La~q~~~~~~-~~~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~l~~~~--~~l~~~~~vIiDE~H~l~~~~ 154 (702)
T 2p6r_A 78 RALAGEKYESFK-KWEKIGLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRA--SWIKAVSCLVVDEIHLLDSEK 154 (702)
T ss_dssp HHHHHHHHHHHT-TTTTTTCCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHTTC--SGGGGCCEEEETTGGGGGCTT
T ss_pred HHHHHHHHHHHH-HHHHCCCEEEEEECCCCCCHHHCCCCCEEEECHHHHHHHHHCCH--HHHHHCCEEEEEEEEECCCCC
T ss_conf 999999999999-77704988999838877664352699999989899999997575--577625989885025547877
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCEEEEEEEECC---CHH--
Q ss_conf 704799999999998862069804999934478958899997101468559835996433531458641037---646--
Q 000756 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVK---KPL-- 713 (1300)
Q Consensus 639 rg~~le~iv~rl~r~~~~~~~~~riV~LSATlpn~~dva~~L~~~~~~~~~~f~~~~rp~~l~~~~~~v~~~---~~~-- 713 (1300)
||+.++.+++++.+ ..+..|+|+||||++|..+++.|++.. .|...+||+|+...+...... ...
T Consensus 155 r~~~~~~ll~~l~~----~~~~~~ii~lSATl~n~~~~~~~l~~~------~~~~~~r~~~l~~~~~~~~~~~~~~~~~~ 224 (702)
T 2p6r_A 155 RGATLEILVTKMRR----MNKALRVIGLSATAPNVTEIAEWLDAD------YYVSDWRPVPLVEGVLCEGTLELFDGAFS 224 (702)
T ss_dssp THHHHHHHHHHHHH----HCTTCEEEEEECCCTTHHHHHHHTTCE------EEECCCCSSCEEEEEECSSEEEEEETTEE
T ss_pred CCCHHHHHHHHHHH----CCCCCEEEEECCCCCCHHHHHHHHCCC------CCCCCCCCCCCEEEEEECCEEECCCCCHH
T ss_conf 65279999999984----386765999788768999999984897------23688877664688861782310576301
Q ss_pred --HHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHH
Q ss_conf --788987799999999871998099997574789999999999742023122343457013999985321026202553
Q 000756 714 --QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791 (1300)
Q Consensus 714 --~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~la~~L~~~~~~~~~l~~~l~~~~~~~e~l~~~~~~~~~~~L~~ 791 (1300)
.... +...+.+.+ ..++++||||++++++..++..|.+.... ++........++ .......+..|++
T Consensus 225 ~~~~~~-~~~~~~~~~---~~~~~~LVF~~s~~~~~~~a~~L~~~~~~------~~~~~~~~~~i~-~~~~~~~~~~l~~ 293 (702)
T 2p6r_A 225 TSRRVK-FEELVEECV---AENGGVLVFESTRRGAEKTAVKLSAITAK------YVENEGLEKAIL-EENEGEMSRKLAE 293 (702)
T ss_dssp EEEECC-HHHHHHHHH---HTTCCEEEECSSHHHHHHHHHHHHHHHHT------TCCCSSHHHHHH-TTCCSHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHH---HCCCCEEEECCCHHHHHHHHHHHHHHHHH------HCCHHHHHHHHH-HHCCCCCCHHHHH
T ss_conf 444546-999999999---66997899838878999999999999876------469588999998-6245532199999
Q ss_pred HHCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCEEEEECCEECCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 20687388258999888999999970999629983532224347887089995231026999975448988999742015
Q 000756 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRA 871 (1300)
Q Consensus 792 ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVnlPav~vVI~~t~~yd~~~g~~~~~S~~~~~Qr~GRA 871 (1300)
+++.|+++|||+|+..+|..+++.|++|.++|||||++++||||+|++++||+++..|| |.+.++|..+|.||+|||
T Consensus 294 ~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd---~~~~~~s~~~~~Qr~GRa 370 (702)
T 2p6r_A 294 CVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFD---GYSKRIKVSEYKQMAGRA 370 (702)
T ss_dssp HHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEES---SSEEECCHHHHHHHHTTB
T ss_pred HHHCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEEEEECCCEEEC---CCCCCCCHHHHHHHHHHC
T ss_conf 98469288669999999999999998799849997838866578873399984762307---877758999999984332
Q ss_pred CCCCCCCCEEEEEEECCCCHHHHH-HHH-CCCCCCCCCHHH--HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 899999933899990798489999-852-089873310047--6799999998825525999999999766879987209
Q 000756 872 GRPQYDSYGEGIIITGHSELRYYL-SLM-NQQLPIESQFVS--KLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRN 947 (1300)
Q Consensus 872 GR~g~d~~G~~iil~~~~~~~~y~-~ll-~~~lpiES~l~~--~l~d~lnaEI~~g~i~~~~d~i~wL~~t~ly~rl~~n 947 (1300)
||+|++..|.|+++++..+...+. +++ +.+.|++|.+.. .+.++++++++.|++.+.+++.+|+++||+|+++. .
T Consensus 371 GR~g~~~~G~~~~l~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~-~ 449 (702)
T 2p6r_A 371 GRPGMDERGEAIIIVGKRDREIAVKRYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNE-I 449 (702)
T ss_dssp SCTTTCSCEEEEEECCGGGHHHHHHTTTSSCCCCCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHC-C
T ss_pred CCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH-H
T ss_conf 799999873699995573189999999608998846516860558999999997177888999999998506777501-7
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHCCCC-CCH
Q ss_conf 7655898321134202455889999999999977787321256882010433221110344310099998620888-896
Q 000756 948 PALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPT-MGD 1026 (1300)
Q Consensus 948 P~~Y~~~~~~~~~d~~l~~~~~~li~~a~~~L~~~~li~~~~~~~~~~~T~lG~ias~~yI~~~T~~~f~~~l~~~-~~~ 1026 (1300)
+..+.+++|+..|...|+|..+ +.+.+|++|+++|+||+++.++..|...++.. .+.
T Consensus 450 -------------------~~~~~~~~al~~L~~~g~i~~~---~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (702)
T 2p6r_A 450 -------------------SLSYELERVVRQLENWGMVVEA---AHLAPTKLGSLVSRLYIDPLTGFIFHDVLSRMELSD 507 (702)
T ss_dssp -------------------CCHHHHHHHHHHHHHTTSEEES---SSEEECHHHHHHHHTTCCHHHHHHHHHHTTTCCCCH
T ss_pred -------------------HHHHHHHHHHHHHHHCCCEEEC---CEECCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCH
T ss_conf -------------------8999999999999988594289---906648699999998578989999999743046878
Q ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHC--CCC-CCCCCCCC-------HHHHHHHHHHHHHHCCCCCC----CCC
Q ss_conf 78998840772213385790479999998702--998-77799997-------15899999999982757798----730
Q 000756 1027 IELCRLFSLSEEFKYVTVRQDEKMELAKLLDR--VPI-PVKESLEE-------PSAKINVLLQAYISQLKLEG----LSL 1092 (1300)
Q Consensus 1027 ~~il~ils~s~EF~~i~vR~~E~~eL~~L~~~--~p~-pvk~~~~~-------~~~Kv~iLLqa~isr~~l~~----~~L 1092 (1300)
.+++.++|.+.||..+++|++| .++.+++.+ +++ ++.. +.+ ++.|+++|||+|++|.+++. |.+
T Consensus 508 ~~~l~~i~~~~e~~~i~~r~~e-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~k~~~lL~~~~~~~~l~~i~~~~~~ 585 (702)
T 2p6r_A 508 IGALHLICRTPDMERLTVRKTD-SWVEEEAFRLRKELSYYPS-DFSVEYDWFLSEVKTALCLKDWIEEKDEDEICAKYGI 585 (702)
T ss_dssp HHHHHHHHHSTTSCCCCCCTTT-HHHHHHHHHHGGGSSCCCC-TTSTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTC
T ss_pred HHHHHHHHCCCCCCCCCCCCCH-HHHHHHHHHCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
T ss_conf 9999995377444457778765-9999999865466667863-0000123456669999999999827986889988577
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCC-CCHHHCC
Q ss_conf -12199999949999999999999807199999999999999731257743332346889899999981798-5110014
Q 000756 1093 -TSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF-AWERYYD 1170 (1300)
Q Consensus 1093 -~~D~~~I~q~a~RLlral~eI~l~~~w~~~a~~~l~L~k~i~q~~W~~~spL~Qlp~i~~~~i~~le~~~~-~~~~l~~ 1170 (1300)
..|+.+++++|.||++|+++||...||. .+++|+|||.||+|+..+||+|+|||+...+++|.++++ ++.++.+
T Consensus 586 ~~gdl~~i~~~a~~l~~a~~~i~~~~g~~----~l~~l~~ri~~gv~~~~~~L~qlp~v~~~~ar~l~~~g~~s~~~l~~ 661 (702)
T 2p6r_A 586 APGDLRRIVETAEWLSNAMNRIAEEVGNT----SVSGLTERIKHGVKEELLELVRIRHIGRVRARKLYNAGIRNAEDIVR 661 (702)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTCC----SSTTHHHHHHHTCCGGGHHHHTSTTCCHHHHHHHHTTTCCSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHH
T ss_conf 67759999999999999999999973999----99999999980898222756158999999999999769998999986
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEEE
Q ss_conf 9958872010287104799999821993269999
Q 000756 1171 LSPQELGELIRFPKMGRTLHKFVHQFPKLILAAH 1204 (1300)
Q Consensus 1171 l~~~e~~~ll~~~~~~~~i~~~~~~~P~l~i~~~ 1204 (1300)
++ +++..+++ ++.|+.+.+.++ +|.+++++.
T Consensus 662 ~~-~~l~~ll~-~~~~~~i~~~~~-~p~~~~~~~ 692 (702)
T 2p6r_A 662 HR-EKVASLIG-RGIAERVVEGIS-VKSLNPESA 692 (702)
T ss_dssp TH-HHHHHHHC-HHHHHHHHHHHH-HHC------
T ss_pred HH-HHHHHHHC-HHHHHHHHHHCC-CCCCCCCHH
T ss_conf 15-89999858-457999999568-885681045
No 4
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=769.59 Aligned_cols=658 Identities=26% Similarity=0.370 Sum_probs=548.1
Q ss_pred CCCHHHHHHC--CCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECC
Q ss_conf 9993358520--89999999999999999818990999856999608999999999998426999999899719999857
Q 000756 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (1300)
Q Consensus 481 ~Lp~~~~~~f--~g~~~ln~iQs~~i~~~l~~~~nlLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiIiIaP 558 (1300)
.||+++...| .||..|+++|.++++.++..++|++++||||||||+++++++++.+... +.+++|++|
T Consensus 14 ~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~----------~~~il~i~P 83 (715)
T 2va8_A 14 KLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN----------GGKAIYVTP 83 (715)
T ss_dssp SSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS----------CSEEEEECS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHC----------CCEEEEEEC
T ss_conf 9999999999867998799999999999864899489984898759999999999999977----------984999908
Q ss_pred CHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHCCCEEEEECCCHHHHHHHHCCCCCCCCCCCEEEEECCCCCCC-
Q ss_conf 3889999999996100147829999928874345210561399977421899983149986545300899814310005-
Q 000756 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD- 637 (1300)
Q Consensus 559 ~kaLv~q~~~~~~~~l~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~~~~v~lIIiDEvH~l~d- 637 (1300)
+++|+.|++.+|+ .+..+|++|+.++|+..........++|+|+|||+|+.+.++.. .+++.+++||+||+|++.+
T Consensus 84 ~r~La~q~~~~~~-~~~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~--~~l~~~~~vIiDE~H~l~~~ 160 (715)
T 2va8_A 84 LRALTNEKYLTFK-DWELIGFKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRHRP--EWLNEVNYFVLDELHYLNDP 160 (715)
T ss_dssp CHHHHHHHHHHHG-GGGGGTCCEEECCSCSSSCCGGGGGCSEEEECHHHHHHHHHHCC--GGGGGEEEEEECSGGGGGCT
T ss_pred CHHHHHHHHHHHH-HHHCCCCEEEEEECCCCCCHHHCCCCCEEEECHHHHHHHHHCCH--HHHHCCCEEEEECHHHCCCC
T ss_conf 5999999999998-76527988999848977762013799999985899999996785--57643698999535552786
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCEEEEEEEEC--------
Q ss_conf 870479999999999886206980499993447895889999710146855983599643353145864103--------
Q 000756 638 NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQV-------- 709 (1300)
Q Consensus 638 ~rg~~le~iv~rl~r~~~~~~~~~riV~LSATlpn~~dva~~L~~~~~~~~~~f~~~~rp~~l~~~~~~v~~-------- 709 (1300)
.+|+.++.++.++. ..|+|+||||++|+.+++.|++.. .+...+||+|+...+.....
T Consensus 161 ~~~~~l~~i~~~~~--------~~~ii~lSATl~n~~~~~~~l~~~------~~~~~~r~~~l~~~~~~~~~~~~~~~~~ 226 (715)
T 2va8_A 161 ERGPVVESVTIRAK--------RRNLLALSATISNYKQIAKWLGAE------PVATNWRPVPLIEGVIYPERKKKEYNVI 226 (715)
T ss_dssp TTHHHHHHHHHHHH--------TSEEEEEESCCTTHHHHHHHHTCE------EEECCCCSSCEEEEEEEECSSTTEEEEE
T ss_pred CCCHHHHHHHHHCC--------CCCEEEECCCCCCHHHHHHHHCCC------CCCCCCCCCCCEEEEEECCCCCCCEEEE
T ss_conf 62229999998653--------672899717879999999984997------4579999887468888358766540465
Q ss_pred -CC-HHHHHHHHHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHC---
Q ss_conf -76-4678898779999999987-19980999975747899999999997420231223434570139999853210---
Q 000756 710 -KK-PLQRFQLMNDLCYEKVVAV-AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDM--- 783 (1300)
Q Consensus 710 -~~-~~~~~~~l~~~~~~~i~~~-~~~~~vLVFv~sr~~~~~la~~L~~~~~~~~~l~~~l~~~~~~~e~l~~~~~~--- 783 (1300)
.. ....+. .....+..+.+. ..++++||||+++++++.++..|.+..... ++. ......+......
T Consensus 227 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~-----~~~--~~~~~~~~~~~~~i~~ 298 (715)
T 2va8_A 227 FKDNTTKKVH-GDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFV-----SLD--ENALSEILKQLDDIEE 298 (715)
T ss_dssp ETTSCEEEEE-SSSHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSS-----CCC--HHHHHHHHHHHHTCCS
T ss_pred CCCCHHHHCC-CCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHC-----CCC--HHHHHHHHHHHHHHHH
T ss_conf 2760443213-4438999999998669977999798899999999999987654-----288--6778999999998663
Q ss_pred ---CCCHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCEEEEECCEECCCCCC-CCCCC
Q ss_conf ---26202553206873882589998889999999709996299835322243478870899952310269999-75448
Q 000756 784 ---VKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKG-AWTEL 859 (1300)
Q Consensus 784 ---~~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVnlPav~vVI~~t~~yd~~~g-~~~~~ 859 (1300)
..+..|+++++.|+++|||+|+..+|..+++.|++|.++|||||++++||||+|++++||++++.|++..+ .+.++
T Consensus 299 ~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~ 378 (715)
T 2va8_A 299 GGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEI 378 (715)
T ss_dssp SCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------
T ss_pred CCCCCCHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECHHHHCCCCCCCEEEEEECCEECCCCCCCCCCCC
T ss_conf 45532299999996687887899999999999999986998599978087661688854999918756446677787759
Q ss_pred CHHHHHHHHHCCCCCCCCCCEEEEEEECCCCH--HHHHHHH-CCCCCCCCCHHH--HHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 98899974201589999993389999079848--9999852-089873310047--679999999882552599999999
Q 000756 860 SPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL--RYYLSLM-NQQLPIESQFVS--KLADQLNAEIVLGTVQNAKEACNW 934 (1300)
Q Consensus 860 S~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~--~~y~~ll-~~~lpiES~l~~--~l~d~lnaEI~~g~i~~~~d~i~w 934 (1300)
|..+|.||+|||||+|++..|.|+++++..+. .++..++ +.+.|++|.+.. .+.++++++++.|++.+.+++.+|
T Consensus 379 s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~ 458 (715)
T 2va8_A 379 PIMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENF 458 (715)
T ss_dssp CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGGHHHHHHHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHH
T ss_pred CHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 99999998424279988887569999678067999999997089987353378666799999999851566889999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHH
Q ss_conf 97668799872097655898321134202455889999999999977787321256882010433221110344310099
Q 000756 935 IGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTIS 1014 (1300)
Q Consensus 935 L~~t~ly~rl~~nP~~Y~~~~~~~~~d~~l~~~~~~li~~a~~~L~~~~li~~~~~~~~~~~T~lG~ias~~yI~~~T~~ 1014 (1300)
+++||+|+++.. .-++.|+..|...|+|..+ .+.+.+|++|+++|+||+++.++.
T Consensus 459 l~~~~~~~~~~~-----------------------~~~~~al~~L~~~g~i~~~--~~~~~~t~lG~~~~~~~~~~~~~~ 513 (715)
T 2va8_A 459 AYESLLAKQLVD-----------------------VYFDRAIRWLLEHSFIKEE--GNTFALTNFGKRVADLYINPFTAD 513 (715)
T ss_dssp HTTSSSCHHHHH-----------------------HHHHHHHHHHHHTTSEEEC--SSEEEECHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHCCH-----------------------HHHHHHHHHHHHCCCEEEC--CCEEEECHHHHHHHHHCCCHHHHH
T ss_conf 985078764263-----------------------8899999999888497666--986866768999999748986799
Q ss_pred HHHHHCCC--CCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHC-CC-----CCCCCC-CCC--HHHHHHHHHHHHHH
Q ss_conf 99862088--889678998840772213385790479999998702-99-----877799-997--15899999999982
Q 000756 1015 TYNEHLKP--TMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDR-VP-----IPVKES-LEE--PSAKINVLLQAYIS 1083 (1300)
Q Consensus 1015 ~f~~~l~~--~~~~~~il~ils~s~EF~~i~vR~~E~~eL~~L~~~-~p-----~pvk~~-~~~--~~~Kv~iLLqa~is 1083 (1300)
.|...++. ..+..+++.++|.+.||..+++|++|+.+|.++..+ .+ .|++.. .+. ++.|+++|||+|++
T Consensus 514 ~~~~~~~~~~~~~~~~~l~~i~~~~e~~~~~~r~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~ 593 (715)
T 2va8_A 514 IIRKGLEGHKASCELAYLHLLAFTPDGPLVSVGRNEEEELIELLEDLDCELLIEEPYEEDEYSLYINALKVALIMKDWMD 593 (715)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHHHSTTSCCCCCCHHHHHHHHHHHTTCSSCCSSCCCSSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 99998654257878999999526843345764867899999999852111113666543102345777999999999984
Q ss_pred CCCCCC----CCC-HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 757798----730-121999999499999999999998071999999999999997312577433323468898999999
Q 000756 1084 QLKLEG----LSL-TSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKL 1158 (1300)
Q Consensus 1084 r~~l~~----~~L-~~D~~~I~q~a~RLlral~eI~l~~~w~~~a~~~l~L~k~i~q~~W~~~spL~Qlp~i~~~~i~~l 1158 (1300)
|.++.. +.+ ..|+.+++++|.|+++|+++||...||...+..++.|+++|.+|+|+..+||+|||+++...++++
T Consensus 594 ~~~~~~i~~~y~~~~gdl~~l~~~a~~l~~a~~~i~~~~~~~~~~~~l~~l~~rl~~gv~~e~~~L~qlp~i~~~rar~L 673 (715)
T 2va8_A 594 EVDEDTILSKYNIGSGDLRNMVETMDWLTYSAYHLSRELKLNEHADKLRILNLRVRDGIKEELLELVQISGVGRKRARLL 673 (715)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCGGGHHHHTSTTCCHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHCCHHHCCCCCHHHHHHH
T ss_conf 99878999997898244999999999999999999999494889999999999998289832140541899998999999
Q ss_pred HHCCC-CCHHHCCCCHHHHHHHHCCCCCHHHHHH-HHHCCCCEE
Q ss_conf 81798-5110014995887201028710479999-982199326
Q 000756 1159 EKKDF-AWERYYDLSPQELGELIRFPKMGRTLHK-FVHQFPKLI 1200 (1300)
Q Consensus 1159 e~~~~-~~~~l~~l~~~e~~~ll~~~~~~~~i~~-~~~~~P~l~ 1200 (1300)
+++++ ++.++. .+++++..+++ ++.|+.+++ +..++|.++
T Consensus 674 ~~~g~~s~~~l~-~~~~~l~~~l~-~~~~~~i~~~~~~~~~~~~ 715 (715)
T 2va8_A 674 YNNGIKELGDVV-MNPDKVKNLLG-QKLGEKVVQEAARLLNRFH 715 (715)
T ss_dssp HHTTCCSHHHHH-HCHHHHHHHHC-HHHHHHHHHHHHHHHC---
T ss_pred HHCCCCCHHHHH-CCHHHHHHHHC-HHHHHHHHHHHHHHHCCCC
T ss_conf 985999899982-79999999967-5489999999987625579
No 5
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=1.00 E-value=1 Score=768.33 Aligned_cols=657 Identities=25% Similarity=0.368 Sum_probs=541.8
Q ss_pred CCCHHHHHHC--CCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECC
Q ss_conf 9993358520--89999999999999999818990999856999608999999999998426999999899719999857
Q 000756 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (1300)
Q Consensus 481 ~Lp~~~~~~f--~g~~~ln~iQs~~i~~~l~~~~nlLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiIiIaP 558 (1300)
.||+++...| .||..|+++|.++++.++..++|++++||||||||+++++++++.+... +.+++|++|
T Consensus 7 ~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~----------~~~~l~i~P 76 (720)
T 2zj8_A 7 RVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ----------GGKAVYIVP 76 (720)
T ss_dssp CSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH----------CSEEEEECS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHC----------CCEEEEECC
T ss_conf 9998999999877998899999999999855799489986996379999999999999867----------998999859
Q ss_pred CHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHCCCEEEEECCCHHHHHHHHCCCCCCCCCCCEEEEECCCCCCC-
Q ss_conf 3889999999996100147829999928874345210561399977421899983149986545300899814310005-
Q 000756 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD- 637 (1300)
Q Consensus 559 ~kaLv~q~~~~~~~~l~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~~~~v~lIIiDEvH~l~d- 637 (1300)
+++|+.|++++|+ .+..+|++|+.++|+..........++|+|+|||+|+.+.++.. .+++.+++||+||+|++.+
T Consensus 77 ~raLa~q~~~~~~-~l~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~--~~l~~~~~vIiDE~H~l~~~ 153 (720)
T 2zj8_A 77 LKALAEEKFQEFQ-DWEKIGLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGS--SWIKDVKILVADEIHLIGSR 153 (720)
T ss_dssp SGGGHHHHHHHTG-GGGGGTCCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHHTC--TTGGGEEEEEEETGGGGGCT
T ss_pred CHHHHHHHHHHHH-HHHHCCCEEEEECCCCCCCCCCCCCCCEEEECHHHHHHHHHCCH--HHHHCCCEEEEECCCCCCCC
T ss_conf 6999999999999-88735977999638977641214799999988899999997571--46652798999898556787
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCEEEEEEEECCCHHH---
Q ss_conf 87047999999999988620698049999344789588999971014685598359964335314586410376467---
Q 000756 638 NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQ--- 714 (1300)
Q Consensus 638 ~rg~~le~iv~rl~r~~~~~~~~~riV~LSATlpn~~dva~~L~~~~~~~~~~f~~~~rp~~l~~~~~~v~~~~~~~--- 714 (1300)
.||+.++.++.++. ..+|+|+||||++|+.+++.|++.. .+...+||+|+...+..-.......
T Consensus 154 ~r~~~~~~ll~~l~-------~~~~ii~lSATl~n~~~~~~~l~~~------~~~~~~rp~~l~~~~~~~~~~~~~~~~~ 220 (720)
T 2zj8_A 154 DRGATLEVILAHML-------GKAQIIGLSATIGNPEELAEWLNAE------LIVSDWRPVKLRRGVFYQGFVTWEDGSI 220 (720)
T ss_dssp TTHHHHHHHHHHHB-------TTBEEEEEECCCSCHHHHHHHTTEE------EEECCCCSSEEEEEEEETTEEEETTSCE
T ss_pred CCCHHHHHHHHHHH-------CCCEEEEECCCCCCHHHHHHHHCCC------CCCCCCCCCCCEEEEEECCEEECCCCCH
T ss_conf 64479999999864-------0776999758868999999982986------0378988876368897578131165320
Q ss_pred -HHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH----CCCCHHH
Q ss_conf -88987799999999871998099997574789999999999742023122343457013999985321----0262025
Q 000756 715 -RFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTD----MVKSNDL 789 (1300)
Q Consensus 715 -~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~la~~L~~~~~~~~~l~~~l~~~~~~~e~l~~~~~----~~~~~~L 789 (1300)
........+.+.+ ..++++||||++++.|+.++..|.+.... ++. ......+..... ...+..|
T Consensus 221 ~~~~~~~~~~~~~~---~~~~~~LVF~~sr~~~~~~a~~L~~~~~~------~~~--~~~~~~~~~~~~~i~~~~~~~~l 289 (720)
T 2zj8_A 221 DRFSSWEELVYDAI---RKKKGALIFVNMRRKAERVALELSKKVKS------LLT--KPEIRALNELADSLEENPTNEKL 289 (720)
T ss_dssp EECSSTTHHHHHHH---HTTCCEEEECSCHHHHHHHHHHHHHHHGG------GSC--HHHHHHHHHHHHTSCSCHHHHHH
T ss_pred HHHHHHHHHHHHHH---HCCCCEEEEECCHHHHHHHHHHHHHHHHH------HCC--HHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 00169999999998---67998899965879999999999999987------459--06689999999987516650889
Q ss_pred HHHHCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCEEEEECCEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf 53206873882589998889999999709996299835322243478870899952310269999754489889997420
Q 000756 790 KDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLG 869 (1300)
Q Consensus 790 ~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVnlPav~vVI~~t~~yd~~~g~~~~~S~~~~~Qr~G 869 (1300)
+++++.|+++|||+|++.+|..+++.|++|.++|||||++++||||+|++++||++++.|+ .. ++.++|..+|+||+|
T Consensus 290 ~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd-~~-g~~~~s~~~~~Qr~G 367 (720)
T 2zj8_A 290 AKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYS-DF-GMERIPIIEVHQMLG 367 (720)
T ss_dssp HHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECC-SS-SCEECCHHHHHHHHT
T ss_pred HHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEEEEECCCEEEC-CC-CCCCCCHHHHHHHHH
T ss_conf 9998519463248999999999999997799759998818666288885289984872406-88-876089999999875
Q ss_pred CCCCCCCCCCEEEEEEECCCCHHH-HHHHH-CCCCCCCCCHHH--HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 158999999338999907984899-99852-089873310047--67999999988255259999999997668799872
Q 000756 870 RAGRPQYDSYGEGIIITGHSELRY-YLSLM-NQQLPIESQFVS--KLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRML 945 (1300)
Q Consensus 870 RAGR~g~d~~G~~iil~~~~~~~~-y~~ll-~~~lpiES~l~~--~l~d~lnaEI~~g~i~~~~d~i~wL~~t~ly~rl~ 945 (1300)
||||+|++..|.|+++++..+... +..++ +.+.|++|++.. .+.++++++++.|++.+.+++.+|+++||+|+++.
T Consensus 368 RaGR~g~~~~G~~~~l~~~~~~~~~~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~~~~ 447 (720)
T 2zj8_A 368 RAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRK 447 (720)
T ss_dssp TBCCTTTCSEEEEEEECSSSCHHHHHHHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHHHCS
T ss_pred HCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHCC
T ss_conf 44899888876699996671099999999618998717656860439999999997177889999999998276877436
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHCCCC--
Q ss_conf 097655898321134202455889999999999977787321256882010433221110344310099998620888--
Q 000756 946 RNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPT-- 1023 (1300)
Q Consensus 946 ~nP~~Y~~~~~~~~~d~~l~~~~~~li~~a~~~L~~~~li~~~~~~~~~~~T~lG~ias~~yI~~~T~~~f~~~l~~~-- 1023 (1300)
. + .++.+.+++|+..|...|+|..+. .+.+.+|++|+++|+||+++.++..|...++..
T Consensus 448 ~--------------~----~~~~~~~~~~l~~L~~~~~i~~~~-~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (720)
T 2zj8_A 448 D--------------T----YSLEEKIRNILYFLLENEFIEISL-EDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVK 508 (720)
T ss_dssp C--------------C----HHHHHHHHHHHHHHHHTTSEEECT-TSCEEECHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred C--------------H----HHHHHHHHHHHHHHHHCCCEEECC-CCCEEECHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 4--------------5----789999999999999887935778-98275576999999973899999999999876425
Q ss_pred -CCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHC------CCCCCCCCCCC-------HHHHHHHHHHHHHHCCCCCC
Q ss_conf -89678998840772213385790479999998702------99877799997-------15899999999982757798
Q 000756 1024 -MGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDR------VPIPVKESLEE-------PSAKINVLLQAYISQLKLEG 1089 (1300)
Q Consensus 1024 -~~~~~il~ils~s~EF~~i~vR~~E~~eL~~L~~~------~p~pvk~~~~~-------~~~Kv~iLLqa~isr~~l~~ 1089 (1300)
.+..++|.++|++.||..+++|++|+.+|.+++.+ .++|++..... ++.|+++|||+|++|.+++.
T Consensus 509 ~~~~~~~l~i~~~~~e~~~i~~r~~e~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~k~~llL~~~i~~~~l~~ 588 (720)
T 2zj8_A 509 DPNPIGIFHLISLTPDITPFNYSKREFERLEEEYYEFKDRLYFDDPYISGYDPYLERKFFRAFKTALVLLAWINEVPEGE 588 (720)
T ss_dssp SCCHHHHHHHHHTSTTCCCCCCCHHHHHHHHHHHHHHGGGCSSCCTTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred CCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 89888999975058532126637778999999998563201236553344420135567777999999999981798788
Q ss_pred ----CC-CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCC-
Q ss_conf ----73-012199999949999999999999807199999999999999731257743332346889899999981798-
Q 000756 1090 ----LS-LTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF- 1163 (1300)
Q Consensus 1090 ----~~-L~~D~~~I~q~a~RLlral~eI~l~~~w~~~a~~~l~L~k~i~q~~W~~~spL~Qlp~i~~~~i~~le~~~~- 1163 (1300)
|. +..|+.+++++|.||++|+++||...||...+..+..|+|||.|++|+..+||.|+|||+...+++|.+.++
T Consensus 589 i~~~~~~~~gdl~~~~~~a~~l~~a~~~i~~~~g~~~~~~~l~~l~~rl~~gv~~e~~~L~qlp~v~~~rar~L~~~G~~ 668 (720)
T 2zj8_A 589 IVEKYSVEPGDIYRIVETAEWLVYSLKEIAKVLGAYEIVDYLETLRVRVKYGIREELIPLMQLPLVGRRRARALYNSGFR 668 (720)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHTCCGGGGGGTTSTTCCHHHHHHHHTTTCC
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHCCCC
T ss_conf 88883887676999999999999999999997496999999999999997589801003562799989999999976999
Q ss_pred CCHHHCCCCHHHHHHHHCCCCCH----HHHHHHHHCCCC
Q ss_conf 51100149958872010287104----799999821993
Q 000756 1164 AWERYYDLSPQELGELIRFPKMG----RTLHKFVHQFPK 1198 (1300)
Q Consensus 1164 ~~~~l~~l~~~e~~~ll~~~~~~----~~i~~~~~~~P~ 1198 (1300)
++.++.+++++++..+ ++.+ +.+..++.++|.
T Consensus 669 s~~dl~~~~~~~l~~~---~~~~~~i~~~~~~~~~~~~~ 704 (720)
T 2zj8_A 669 SIEDISQARPEELLKI---EGIGVKTVEAIFKFLGKNVK 704 (720)
T ss_dssp SHHHHHTCCHHHHHTS---TTCCHHHHHHHHHHHC----
T ss_pred CHHHHHHCCHHHHHHH---HHHHHHHHHHHHHHCCCCCC
T ss_conf 8999984899999874---74899999999986332233
No 6
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=1.00 E-value=1 Score=515.52 Aligned_cols=304 Identities=24% Similarity=0.392 Sum_probs=287.8
Q ss_pred CCCEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC-CCCCC
Q ss_conf 88201043322111034431009999862088889678998840772213385790479999998702998777-99997
Q 000756 991 SGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVK-ESLEE 1069 (1300)
Q Consensus 991 ~~~~~~T~lG~ias~~yI~~~T~~~f~~~l~~~~~~~~il~ils~s~EF~~i~vR~~E~~eL~~L~~~~p~pvk-~~~~~ 1069 (1300)
.|.+.||++|+|||+|||++.||+.|+..+++.++..++|+++|.|.||..+++|++|+.+|.+|.+++|+|++ +.++.
T Consensus 10 ~g~l~~t~lGriaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~EF~~i~vR~~E~~~l~~L~~~~~~~~~~~~~~~ 89 (339)
T 2q0z_X 10 HMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFND 89 (339)
T ss_dssp ---------------------------------CCHHHHHHHHHTSGGGTTCCCCTTCHHHHHHHHHHSSSCCSSCCTTC
T ss_pred CCEECCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 76463684789999978798899999997152699889999971538775277784449999999985877566678998
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 15899999999982757798730121999999499999999999998071999999999999997312577433323468
Q 000756 1070 PSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNG 1149 (1300)
Q Consensus 1070 ~~~Kv~iLLqa~isr~~l~~~~L~~D~~~I~q~a~RLlral~eI~l~~~w~~~a~~~l~L~k~i~q~~W~~~spL~Qlp~ 1149 (1300)
|+.|+++||||||||++++ .+|.+|+.+|+++|+||++||+||++.+||+.++.++++|||||+||+|+.++||+||||
T Consensus 90 ~~~K~~lLLqa~isr~~l~-~~l~~D~~~V~~~a~RLl~al~di~~~~g~~~~~~~~l~L~q~i~q~~w~~~~pL~Qlp~ 168 (339)
T 2q0z_X 90 PHVKTNLLLQAHLSRMQLS-AELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPH 168 (339)
T ss_dssp HHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTCCTTSCGGGGSTT
T ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCEECCCC
T ss_conf 8999999999997478897-689999999999999999999999997688999999999999999743899995006999
Q ss_pred CCHHHHHHHHHCCC-CCHHHCCCCHHHHHHHHCCCC-CHHHHHHHHHCCCCEEEEEEEEE---E-CCCEEEEEEEEECCC
Q ss_conf 89899999981798-511001499588720102871-04799999821993269999964---0-582699999993299
Q 000756 1150 IPNEILMKLEKKDF-AWERYYDLSPQELGELIRFPK-MGRTLHKFVHQFPKLILAAHVQP---I-TRTVLKVELTITPDF 1223 (1300)
Q Consensus 1150 i~~~~i~~le~~~~-~~~~l~~l~~~e~~~ll~~~~-~~~~i~~~~~~~P~l~i~~~vqp---i-t~~~l~v~l~i~p~~ 1223 (1300)
|+.+++++++++++ +++++.++++++++.++++++ .++++++++++||++++++.+++ | +++.+++.+++++++
T Consensus 169 i~~~~~~~l~~~~i~s~~~l~~~~~~e~~~ll~l~~~~~~~i~~~~~~~P~l~v~~~v~~~~~i~~~~~~~l~v~l~~~~ 248 (339)
T 2q0z_X 169 FTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQLEREE 248 (339)
T ss_dssp CCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHHCCCHHHHHHHHHHHTTSCCEEEEEEETTGGGCBTTSEEEEEEEEEECS
T ss_pred CCHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCEEEEEEEEECC
T ss_conf 79999999986599979999749999999997899999999999998689679999981686123897089999999888
Q ss_pred CCCCCCCCCCCC------EEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEECCCCCCCEEEEEEEECCCCCCCEEE
Q ss_conf 668887654456------89999818998599986787531133530799999726899996399999805754653689
Q 000756 1224 LWDDKVHGYVEP------FWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGVLVCV 1297 (1300)
Q Consensus 1224 ~~~~~vh~~~e~------wwi~v~D~~~~~il~~~~~~l~~~~~~~~~~i~F~vP~~~p~~~~~~i~viSD~ylg~d~~~ 1297 (1300)
.|+..+|+|++| ||+||+|+++++|++++++.+.+ ...+.++|++| +||+++|+|+++||+|+|||++.
T Consensus 249 ~~~~~v~aP~fp~~k~e~wwi~v~d~~~~~ll~~~r~~l~~---~~~~~l~f~~P--~~g~~~~~v~~vSD~ylG~D~~~ 323 (339)
T 2q0z_X 249 EVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQ---KAKVKLDFVAP--ATGAHNYTLYFMSDAYMGCDQEY 323 (339)
T ss_dssp SCCSSCCCTTCSSCCCCCEEEEEEETTTTEEEEEEEECCSS---EEEEEEEEECC--SSEEEEEEEEEEESSCSSCCEEE
T ss_pred CCCCCEECCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCC---CEEEEEEEECC--CCCCEEEEEEEECCCCCCCCEEE
T ss_conf 77872458989988877589999988999899999982266---44899999778--89981399999744666764599
Q ss_pred ECC
Q ss_conf 879
Q 000756 1298 WLN 1300 (1300)
Q Consensus 1298 ~i~ 1300 (1300)
+++
T Consensus 324 ~i~ 326 (339)
T 2q0z_X 324 KFS 326 (339)
T ss_dssp EEE
T ss_pred EEE
T ss_conf 999
No 7
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=1.00 E-value=1 Score=502.73 Aligned_cols=305 Identities=24% Similarity=0.360 Sum_probs=281.7
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC--CCCC
Q ss_conf 68820104332211103443100999986208888967899884077221338579047999999870299877--7999
Q 000756 990 KSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPV--KESL 1067 (1300)
Q Consensus 990 ~~~~~~~T~lG~ias~~yI~~~T~~~f~~~l~~~~~~~~il~ils~s~EF~~i~vR~~E~~eL~~L~~~~p~pv--k~~~ 1067 (1300)
.++.+.||++|+|||+|||++.||+.|+..+++.++..++|+++|.|.||..+++|++|+.+|.+|...+|+|+ ++.+
T Consensus 5 ~~~~l~~t~lG~iaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~Ef~~i~vR~~E~~~l~~L~~~~~~~~~~~~~~ 84 (328)
T 3im1_A 5 ATEIISTLSNGLIASHYGVSFFTIQSFVSSLSNTSTLKNMLYVLSTAVEFESVPLRKGDRALLVKLSKRLPLRFPEHTSS 84 (328)
T ss_dssp CCCCCTTSSSCBCCCCCCCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGGGSCCCTTHHHHHHHHHTTSSSCCCTTSCS
T ss_pred CCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 79876678166999987878999999999733248999999984467888746358206899999997688766666778
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 97158999999999827577987301219999994999999999999980719999999999999973125774333234
Q 000756 1068 EEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQF 1147 (1300)
Q Consensus 1068 ~~~~~Kv~iLLqa~isr~~l~~~~L~~D~~~I~q~a~RLlral~eI~l~~~w~~~a~~~l~L~k~i~q~~W~~~spL~Ql 1147 (1300)
++|+.|+++||||||||+++++ +|.+|+.+|+++|+||++||+||++.+||+. +.++|+|||||+||+|+.++||+||
T Consensus 85 ~~~~~K~~lLLqa~isr~~l~~-~l~~D~~~V~~~a~rLl~al~di~~~~g~~~-~~~~l~L~q~i~q~~w~~~~pL~Ql 162 (328)
T 3im1_A 85 GSVSFKVFLLLQAYFSRLELPV-DFQNDLKDILEKVVPLINVVVDILSANGYLN-ATTAMDLAQMLIQGVWDVDNPLRQI 162 (328)
T ss_dssp SSHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTBTT-HHHHHHHHHHHHHTSCTTSCGGGGS
T ss_pred CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHCCCCCCCEECC
T ss_conf 9878999999999977999976-8999999999999999999999997289389-9999999999995369999961579
Q ss_pred CCCCHHHHHHHHHCCC-CCHHHCCCCHHHHHHHHCCC-CCHHHHHHHHHCCCCEEEEEEEEE---E-CCCEEEEEEEEEC
Q ss_conf 6889899999981798-51100149958872010287-104799999821993269999964---0-5826999999932
Q 000756 1148 NGIPNEILMKLEKKDF-AWERYYDLSPQELGELIRFP-KMGRTLHKFVHQFPKLILAAHVQP---I-TRTVLKVELTITP 1221 (1300)
Q Consensus 1148 p~i~~~~i~~le~~~~-~~~~l~~l~~~e~~~ll~~~-~~~~~i~~~~~~~P~l~i~~~vqp---i-t~~~l~v~l~i~p 1221 (1300)
|||+.+.+++++++++ +++++.++++++++++++.+ +.++++++++++||++++++++++ | +++.+++.++++|
T Consensus 163 p~i~~~~~~~l~~~~i~s~~~l~~~~~~e~~~ll~~~~~~~~~v~~~~~~~P~l~v~~~v~~~~~i~~~~~~~l~v~l~~ 242 (328)
T 3im1_A 163 PHFNNKILEKCKEINVETVYDIMALEDEERDEILTLTDSQLAQVAAFVNNYPNVELTYSLNNSDSLISGVKQKITIQLTR 242 (328)
T ss_dssp TTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEEETTGGGCCTTSEEEEEEEEEE
T ss_pred CCCCHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCEEEEEEEEEE
T ss_conf 99898999998757998899986089999986728999999999999986898799999658773168972899999998
Q ss_pred CCCCCC-CCC------CCCCCEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEECCCCCCCEEEEEEEECCCCCCC
Q ss_conf 996688-876------5445689999818998599986787531133530799999726899996399999805754653
Q 000756 1222 DFLWDD-KVH------GYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGVL 1294 (1300)
Q Consensus 1222 ~~~~~~-~vh------~~~e~wwi~v~D~~~~~il~~~~~~l~~~~~~~~~~i~F~vP~~~p~~~~~~i~viSD~ylg~d 1294 (1300)
+|.|++ .+| ++.++||+||+|+++++|++.+++.+.+. ..++.++|.+| ++|+++|+++++||+|+|||
T Consensus 243 ~~~~~~~~~~ap~fp~~k~e~ww~~v~d~~~~~l~~~kr~~~~~~--~~~~~~~f~~p--~~g~~~~~v~~vsD~ylG~d 318 (328)
T 3im1_A 243 DVEPENLQVTSEKYPFDKLESWWLVLGEVSKKELYAIKKVTLNKE--TQQYELEFDTP--TSGKHNLTIWCVCDSYLDAD 318 (328)
T ss_dssp SSCCSCCBCCCSSCCBCCBCCEEEEEEEGGGTEEEEEEEECCCSS--EEEEEEEEECC--CSEEEEEEEEEEESSCSSCC
T ss_pred CCCCCCCCEECCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCC--CEEEEEEEECC--CCCCEEEEEEEEECCCCCEE
T ss_conf 888878717789999986478899999888996999853314666--51799999768--99857899999956876503
Q ss_pred EEEECC
Q ss_conf 689879
Q 000756 1295 VCVWLN 1300 (1300)
Q Consensus 1295 ~~~~i~ 1300 (1300)
++++++
T Consensus 319 ~~~~~~ 324 (328)
T 3im1_A 319 KELSFE 324 (328)
T ss_dssp EEEEEE
T ss_pred EEEEEE
T ss_conf 798798
No 8
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=425.06 Aligned_cols=396 Identities=26% Similarity=0.362 Sum_probs=296.0
Q ss_pred CCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 99999999999999998189909998569996089999999999984269999998997199998573889999999996
Q 000756 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (1300)
Q Consensus 492 g~~~ln~iQs~~i~~~l~~~~nlLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiIiIaP~kaLv~q~~~~~~ 571 (1300)
++..|+++|.++++.+..+ .+++++||||||||++|+++++..+.. +.+++|++|+++|+.|+++.|.
T Consensus 181 ~~f~ltp~Q~~AI~~i~~g-~dvLV~ApTGSGKTlva~l~i~~~l~~-----------g~rvlvl~PtraLa~Q~~~~l~ 248 (1108)
T 3l9o_A 181 YPFTLDPFQDTAISCIDRG-ESVLVSAHTSAGKTVVAEYAIAQSLKN-----------KQRVIYTSPIKALSNQKYRELL 248 (1108)
T ss_dssp CSSCCCHHHHHHHHHHTTT-CCEEEECCSSSHHHHHHHHHHHHHHHT-----------TCEEEEEESSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHCC-CCEEEECCCCCCHHHHHHHHHHHHHHC-----------CCEEEEECCCHHHHHHHHHHHH
T ss_conf 7999999999999999769-988998899997199999999999755-----------9749999084999999999999
Q ss_pred HHCCCCCCEEEEEECCCCCCHHHHCCCEEEEECCCHHHHHHHHCCCCCCCCCCCEEEEECCCCCCC-CCHHHHHHHHHHH
Q ss_conf 100147829999928874345210561399977421899983149986545300899814310005-8704799999999
Q 000756 572 NRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVART 650 (1300)
Q Consensus 572 ~~l~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~~~~v~lIIiDEvH~l~d-~rg~~le~iv~rl 650 (1300)
+.+. .|+.++|+.+... .++|+|+||+++........ ..+..+++|||||||.+.+ +||..++.++..
T Consensus 249 ~~~~----~VglltGd~~~~~----~~~IlV~Tpe~L~~~L~~~~--~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~- 317 (1108)
T 3l9o_A 249 AEFG----DVGLMTGDITINP----DAGCLVMTTEILRSMLYRGS--EVMREVAWVIFDEVHYMRDKERGVVWEETIIL- 317 (1108)
T ss_dssp HHTS----SEEEECSSCBCCC----SCSEEEEEHHHHHHHHHHCS--SHHHHEEEEEEETGGGTTSHHHHHHHHHHHHH-
T ss_pred HHHC----CCCEEECCCCCCC----CCCEEEECHHHHHHHHHCCC--CCCCCCCEEEEHHHHHCCCCCHHHHHHHHHHH-
T ss_conf 9828----9218967652689----99989967699999997475--43223789987002120230068999999986-
Q ss_pred HHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCEEEEEEEEC---------CCHH--HHHH-H
Q ss_conf 99886206980499993447895889999710146855983599643353145864103---------7646--7889-8
Q 000756 651 VRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQV---------KKPL--QRFQ-L 718 (1300)
Q Consensus 651 ~r~~~~~~~~~riV~LSATlpn~~dva~~L~~~~~~~~~~f~~~~rp~~l~~~~~~v~~---------~~~~--~~~~-~ 718 (1300)
.+..+++|+||||+||..+++.|+..........+...++|+|+..++..... .... ..+. .
T Consensus 318 ------l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~ 391 (1108)
T 3l9o_A 318 ------LPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKA 391 (1108)
T ss_dssp ------SCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHH
T ss_pred ------CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEECCCCCHHHHHHHHH
T ss_conf ------47776499972888987999999985158982798347875540689862477642564144220115668999
Q ss_pred H---------------------------------HHHHHHHHH--HHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 7---------------------------------799999999--87199809999757478999999999974202312
Q 000756 719 M---------------------------------NDLCYEKVV--AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTL 763 (1300)
Q Consensus 719 l---------------------------------~~~~~~~i~--~~~~~~~vLVFv~sr~~~~~la~~L~~~~~~~~~l 763 (1300)
+ ...++..+. ...+..++||||++++.|..++..|...+......
T Consensus 392 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e 471 (1108)
T 3l9o_A 392 MASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDE 471 (1108)
T ss_dssp HTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC--
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCCHHH
T ss_conf 99987541133211234332222344555443205689999999996289988999584878999999998646997778
Q ss_pred CCCCCCC-CHHHHHHHHH-HHCCCCHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCEE
Q ss_conf 2343457-0139999853-2102620255320687388258999888999999970999629983532224347887089
Q 000756 764 GRFLKED-SVSREILQSH-TDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTV 841 (1300)
Q Consensus 764 ~~~l~~~-~~~~e~l~~~-~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVnlPav~v 841 (1300)
...+..- ......+... ........+..++..||++|||+|++.+|..+++.|++|.++|||||+++++|||+|++++
T Consensus 472 ~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~ 551 (1108)
T 3l9o_A 472 KEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTV 551 (1108)
T ss_dssp --CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEE
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCEE
T ss_conf 99999999988750464433005688787765157565258998999999999986799849998727765778787459
Q ss_pred EEECCEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEEECCC-CHHHHHHHHC-CCCCCCCCHHHHHHHHHHH
Q ss_conf 995231026999975448988999742015899999933899990798-4899998520-8987331004767999999
Q 000756 842 IIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS-ELRYYLSLMN-QQLPIESQFVSKLADQLNA 918 (1300)
Q Consensus 842 VI~~t~~yd~~~g~~~~~S~~~~~Qr~GRAGR~g~d~~G~~iil~~~~-~~~~y~~ll~-~~lpiES~l~~~l~d~lna 918 (1300)
||+++..|++.. ..++|+.+|+||+|||||.|.+..|.+++++... ....+..++. ...|++|+|.......+|.
T Consensus 552 VI~~~~~~d~~~--~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~~~~~~L~S~f~~~y~~ilnl 628 (1108)
T 3l9o_A 552 VFTSVRKWDGQQ--FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNL 628 (1108)
T ss_dssp EESCSEEESSSC--EEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_pred EEECCCCCCCCC--CCCCCHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 996576668644--56389999997636347789998559999955886899999996199963122657859999999
No 9
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=418.48 Aligned_cols=386 Identities=25% Similarity=0.359 Sum_probs=292.0
Q ss_pred CCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 99999999999999998189909998569996089999999999984269999998997199998573889999999996
Q 000756 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (1300)
Q Consensus 492 g~~~ln~iQs~~i~~~l~~~~nlLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiIiIaP~kaLv~q~~~~~~ 571 (1300)
+| .|+++|.++++.+..+ .+++++||||+|||++|.++++..+.. +.+++|++|+++|+.|+++.|.
T Consensus 84 ~f-~L~~~Q~eai~~l~~g-~~vLV~apTGSGKTlva~lai~~~l~~-----------g~rvL~l~PtkaLa~Q~~~~l~ 150 (1010)
T 2xgj_A 84 PF-TLDPFQDTAISCIDRG-ESVLVSAHTSAGKTVVAEYAIAQSLKN-----------KQRVIYTSPIKALSNQKYRELL 150 (1010)
T ss_dssp SS-CCCHHHHHHHHHHHHT-CEEEEECCTTSCHHHHHHHHHHHHHHT-----------TCEEEEEESSHHHHHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHCC-CCEEEECCCCCCHHHHHHHHHHHHHCC-----------CCEEEEECCHHHHHHHHHHHHH
T ss_conf 99-9989999999999739-989998899998099999999997515-----------9869998795999999999999
Q ss_pred HHCCCCCCEEEEEECCCCCCHHHHCCCEEEEECCCHHHHHHHHCCCCCCCCCCCEEEEECCCCCCC-CCHHHHHHHHHHH
Q ss_conf 100147829999928874345210561399977421899983149986545300899814310005-8704799999999
Q 000756 572 NRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVART 650 (1300)
Q Consensus 572 ~~l~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~~~~v~lIIiDEvH~l~d-~rg~~le~iv~rl 650 (1300)
+.+. .|+.++|+..... .++|+|+|||++..+..+.. ..+..+++|||||+|.+.+ .||.+++.++..
T Consensus 151 ~~~~----~vglltGd~~~~~----~~~IvV~Tpe~L~~~L~~~~--~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~- 219 (1010)
T 2xgj_A 151 AEFG----DVGLMTGDITINP----DAGCLVMTTEILRSMLYRGS--EVMREVAWVIFDEVHYMRDKERGVVWEETIIL- 219 (1010)
T ss_dssp HHHS----CEEEECSSCEECT----TCSEEEEEHHHHHHHHHHTC--TTGGGEEEEEEETGGGGGCTTTHHHHHHHHHH-
T ss_pred HHHC----CEEEEECCCCCCC----CCCEEEECHHHHHHHHHCCC--CHHHCCCEEEEECHHHHCCCCHHHHHHHHHHH-
T ss_conf 9718----7789968876689----99999970999999997084--01202788997044352354235999999985-
Q ss_pred HHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCEEEEEEEE---------CCCH------HHH
Q ss_conf 9988620698049999344789588999971014685598359964335314586410---------3764------678
Q 000756 651 VRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQ---------VKKP------LQR 715 (1300)
Q Consensus 651 ~r~~~~~~~~~riV~LSATlpn~~dva~~L~~~~~~~~~~f~~~~rp~~l~~~~~~v~---------~~~~------~~~ 715 (1300)
.+..+++|+||||+||..+++.|+..........+....||+|+.+++.... .... ...
T Consensus 220 ------l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (1010)
T 2xgj_A 220 ------LPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKA 293 (1010)
T ss_dssp ------SCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHH
T ss_pred ------CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEECCCCCCCHHHHHHH
T ss_conf ------68888699980888988999999986348974898258876650699995487651464355433134778999
Q ss_pred ----------------------------------HHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCC
Q ss_conf ----------------------------------8987799999999871998099997574789999999999742023
Q 000756 716 ----------------------------------FQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALEND 761 (1300)
Q Consensus 716 ----------------------------------~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~la~~L~~~~~~~~ 761 (1300)
...+. .+...+. ..+..++||||++++.|..++..|........
T Consensus 294 ~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~-~l~~~l~-~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~ 371 (1010)
T 2xgj_A 294 MASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIY-KIVKMIW-KKKYNPVIVFSFSKRDCEELALKMSKLDFNSD 371 (1010)
T ss_dssp HHTCC------------------------------CHHH-HHHHHHH-HHTCCSEEEEESSHHHHHHHHHTTTTSCCCCH
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH-HHHHHHH-HCCCCCEEEEECCHHHHHHHHHHHHHCCCCCH
T ss_conf 999754303354322234554445556654443367899-9999998-46999889997889999999999983789976
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCC--------CCHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCC
Q ss_conf 12234345701399998532102--------6202553206873882589998889999999709996299835322243
Q 000756 762 TLGRFLKEDSVSREILQSHTDMV--------KSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWG 833 (1300)
Q Consensus 762 ~l~~~l~~~~~~~e~l~~~~~~~--------~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~G 833 (1300)
.. ...-........... ....+..++..||++|||+|++.+|..+++.|++|.++|||||+++++|
T Consensus 372 ~e------~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~G 445 (1010)
T 2xgj_A 372 DE------KEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIG 445 (1010)
T ss_dssp HH------HHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGS
T ss_pred HH------HHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHCC
T ss_conf 77------999999999998743643311025799999873782677788999999999999866997299981276525
Q ss_pred CCCCCCEEEEECCEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEEECCC-CHHHHHHHH-CCCCCCCCCHHHH
Q ss_conf 47887089995231026999975448988999742015899999933899990798-489999852-0898733100476
Q 000756 834 VNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS-ELRYYLSLM-NQQLPIESQFVSK 911 (1300)
Q Consensus 834 VnlPav~vVI~~t~~yd~~~g~~~~~S~~~~~Qr~GRAGR~g~d~~G~~iil~~~~-~~~~y~~ll-~~~lpiES~l~~~ 911 (1300)
||+|++++||++...|++.. +.++|+.+|+||+|||||.|.+..|.++++++.. +...+..++ ....|++|+|...
T Consensus 446 IDiP~~~vVI~~~~kfd~~~--~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~~~~~~l~s~f~~~ 523 (1010)
T 2xgj_A 446 LNMPAKTVVFTSVRKWDGQQ--FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLG 523 (1010)
T ss_dssp TTCCBSEEEESCSEEECSSC--EEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHSCCCCCCCCCCCCC
T ss_pred CCCCCCEEEEECCCCCCCCC--CCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 78888649996773037767--7518999996764210568899855999997998799999999848984100466776
Q ss_pred HHHHHH
Q ss_conf 799999
Q 000756 912 LADQLN 917 (1300)
Q Consensus 912 l~d~ln 917 (1300)
....+|
T Consensus 524 ~~~iln 529 (1010)
T 2xgj_A 524 YNMILN 529 (1010)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999999
No 10
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=1.00 E-value=1 Score=397.31 Aligned_cols=377 Identities=19% Similarity=0.248 Sum_probs=279.4
Q ss_pred CCCCCCCCCCHHHHHHC--CCCCCCCHHHHHHHHHHHCC-CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 76534789993358520--89999999999999999818-9909998569996089999999999984269999998997
Q 000756 474 EKLIKISEMPEWAQPAF--KGMTQLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSN 550 (1300)
Q Consensus 474 ~~l~~i~~Lp~~~~~~f--~g~~~ln~iQs~~i~~~l~~-~~nlLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~ 550 (1300)
..+.+...|++++..++ .||..|+++|.++++.++.+ +.+++++||||+|||++|++++++.+....... ..+
T Consensus 71 ~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~----~~~ 146 (563)
T 3i5x_A 71 DSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDS----QYM 146 (563)
T ss_dssp HHHHHTTSSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSS----TTS
T ss_pred HHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCC----CCC
T ss_conf 8875517889999999997799999999999999996679972999878999742999999999987423466----677
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHCCC----CCCEEEEEECCCCCCHHH----HCCCEEEEECCCHHHHHHHHCCCCCCCC
Q ss_conf 19999857388999999999610014----782999992887434521----0561399977421899983149986545
Q 000756 551 YKIVYVAPMKALVAEVVGNLSNRLQM----YDVKVRELSGDQTLTRQQ----IEETQIIVTTPEKWDIITRKSGDRTYTQ 622 (1300)
Q Consensus 551 ~kiIiIaP~kaLv~q~~~~~~~~l~~----~gi~V~~ltGd~~~~~~~----~~~~~IiV~TPekld~l~r~~~~~~~~~ 622 (1300)
+++||++|+++|+.|++..+.+.+.. .+..+..++|+....... ...++|+|+||+++..+.++.. ...++
T Consensus 147 ~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~-~~~~~ 225 (563)
T 3i5x_A 147 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYS-NKFFR 225 (563)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHH-HHHCT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHCC-CCCCC
T ss_conf 04999828499999999999999742356676049999899077999999746899989989299999998344-11125
Q ss_pred CCCEEEEECCCCCCC-CCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCH-HHHHHHHHCCCCCCEEEEC--CCCCCC
Q ss_conf 300899814310005-870479999999999886206980499993447895-8899997101468559835--996433
Q 000756 623 LVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY-EDVALFLRVNLEKGLFYFD--NSYRPV 698 (1300)
Q Consensus 623 ~v~lIIiDEvH~l~d-~rg~~le~iv~rl~r~~~~~~~~~riV~LSATlpn~-~dva~~L~~~~~~~~~~f~--~~~rp~ 698 (1300)
.+++||+||||++.+ .+++.++.++..+.+........+|++++|||+++. ..++.++...+ ....+. ....+.
T Consensus 226 ~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~ 303 (563)
T 3i5x_A 226 FVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKK--ECLFLDTVDKNEPE 303 (563)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSS--EEEEEESSCSSSCS
T ss_pred CCEEEEEECHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCC--CEEEEECCCCCCCC
T ss_conf 5109998377877505509999999986111035676675599998168878999999863887--61787415777755
Q ss_pred ---CCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf ---53145864103764678898779999999987199809999757478999999999974202312234345701399
Q 000756 699 ---PLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSRE 775 (1300)
Q Consensus 699 ---~l~~~~~~v~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~la~~L~~~~~~~~~l~~~l~~~~~~~e 775 (1300)
.+.+.+..... .......+...+...+.....+.++||||++++.|..++..|......
T Consensus 304 ~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~---------------- 365 (563)
T 3i5x_A 304 AHERIDQSVVISEK--FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKK---------------- 365 (563)
T ss_dssp SCTTEEEEEEEESS--TTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTT----------------
T ss_pred CCCCCCEEEEECCH--HHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHCCC----------------
T ss_conf 21037548998722--676699999999999861378872899948179999999999874247----------------
Q ss_pred HHHHHHHCCCCHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCEEEEECCEECCCCCCC
Q ss_conf 99853210262025532068738825899988899999997099962998353222434788708999523102699997
Q 000756 776 ILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGA 855 (1300)
Q Consensus 776 ~l~~~~~~~~~~~L~~ll~~gv~~~Hagl~~~dR~~ve~~F~~g~i~VLVaT~tla~GVnlPav~vVI~~t~~yd~~~g~ 855 (1300)
.+.+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ |+++.
T Consensus 366 ------------------~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~----~~~p~-- 421 (563)
T 3i5x_A 366 ------------------DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ----IGVPS-- 421 (563)
T ss_dssp ------------------TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE----ESCCS--
T ss_pred ------------------CCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCEEEE----ECCCC--
T ss_conf ------------------960898258899999999999986689988998366646898426777999----79999--
Q ss_pred CCCCCHHHHHHHHHCCCCCCCCCCEEEEEEECCCCHHHHHHHHC-CCCCCC
Q ss_conf 54489889997420158999999338999907984899998520-898733
Q 000756 856 WTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMN-QQLPIE 905 (1300)
Q Consensus 856 ~~~~S~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~-~~lpiE 905 (1300)
++.+|+||+|||||.| ..|.+++++...+..++..+.. ...+++
T Consensus 422 ----s~~~y~Qr~GRagR~g--~~g~~i~~~~~~e~~~~~~l~~~~~~~~~ 466 (563)
T 3i5x_A 422 ----ELANYIHRIGRTARSG--KEGSSVLFICKDELPFVRELEDAKNIVIA 466 (563)
T ss_dssp ----STTHHHHHHTTSSCTT--CCEEEEEEEEGGGHHHHHHHHHHHCCCCC
T ss_pred ----CHHHHHHHCCCCCCCC--CCCEEEEEECHHHHHHHHHHHHHHCCCCC
T ss_conf ----6424646427235699--98539999750488999999997488866
Done!