Query 000757
Match_columns 1299
No_of_seqs 482 out of 3283
Neff 4.6
Searched_HMMs 29240
Date Tue Mar 26 15:53:26 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000757.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_530-534//hhsearch_pdb/000757hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aoj_A High affinity nerve gro 1.0 1 1 429.7 20.9 264 899-1182 40-321 (329)
2 4asz_A BDNF/NT-3 growth factor 1.0 1 1 427.0 18.1 263 900-1182 13-291 (299)
3 4gt4_A Tyrosine-protein kinase 1.0 1 1 423.0 20.6 259 900-1178 26-304 (308)
4 4ase_A Vascular endothelial gr 1.0 1 1 415.8 18.2 274 890-1182 54-349 (353)
5 3omv_A RAF proto-oncogene seri 1.0 1 1 412.9 21.8 265 897-1182 33-302 (307)
6 4b9d_A Serine/threonine-protei 1.0 1 1 406.7 16.6 254 899-1176 23-279 (350)
7 4fie_A Serine/threonine-protei 1.0 1 1 405.2 20.9 250 900-1174 151-401 (423)
8 4fih_A Serine/threonine-protei 1.0 1 1 402.9 20.5 250 900-1174 74-324 (346)
9 3hmm_A TGF-beta receptor type- 1.0 1 1 400.5 18.5 274 900-1181 3-298 (303)
10 4aw0_A HPDK1, 3-phosphoinositi 1.0 1 1 398.2 15.2 251 900-1175 32-286 (311)
No 1
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=429.74 Aligned_cols=264 Identities=27% Similarity=0.454 Sum_probs=222.2
Q ss_pred HCCCCEEEEEEECCCEEEEEEEEC------CCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEE
Q ss_conf 099215467710473689999953------89789999921134332257899888755124466113541443036358
Q 000757 899 TGNFDASRILGEGGFGLVYSGVLD------DGTKVAVKVLKRVDQQGGREFLAEVEMLSRLHHRNLVKLIGICIEEQARC 972 (1299)
Q Consensus 899 T~~Fsi~eiLGkGaFGtVYkA~l~------dG~~VAVK~Lk~~~~~~~keflrEIeILsrLrHPNIVrLlGv~~e~~~~~ 972 (1299)
.++|.+.+.||+|+||+||+|++. +++.||||+++..+....++|++|+++|++|+|+|||+++|+|.+....|
T Consensus 40 ~~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~ 119 (329)
T 4aoj_A 40 RRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLL 119 (329)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEE
T ss_pred HHHEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEE
T ss_conf 89928877971477848998998786657789699999977579799999999999998589989996989999899899
Q ss_pred EEEEECCCCCHHHCCCCCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEECCCCC
Q ss_conf 99963489981000235656-----------7888875689999999999998765249995353013456724316875
Q 000757 973 LVYELIPNGSVESHLHGVDK-----------ESAPLGWDARLKIALGAARALAYLHEDSSPRVIHRDFKSSNILLEHDFT 1041 (1299)
Q Consensus 973 LVmEYi~gGSL~d~L~~~~~-----------~~~~Lsw~~rlkIalQIA~ALaYLHs~gsp~IVHRDIKPsNILLDedg~ 1041 (1299)
+|||||++|+|.++|+.... ....++|.++++|+.|+++||+|||+.+ |+|||||++||||++++.
T Consensus 120 lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLKp~NILl~~~~~ 196 (329)
T 4aoj_A 120 MVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLH---FVHRDLATRNCLVGQGLV 196 (329)
T ss_dssp EEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEETTTE
T ss_pred EEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC---EECCCCCHHHEEECCCCC
T ss_conf 99982799939999986075410012211245788999999999999999999984088---422666676489889996
Q ss_pred CEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-CCCCCCCCCCCCHHHHHHHH
Q ss_conf 03527775211233335442122136556667520014978721100416999999971-99999999997503468843
Q 000757 1042 PKVSDFGLARSAMDEESRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVILELLS-GRKPVDMTQPPGQENLVAWA 1120 (1299)
Q Consensus 1042 VKLsDFGLAr~~~~~~~~~~st~vvGT~gYmAPEvl~~~~~T~KSDVWSLGVILlELLT-Gk~PFd~s~~~~~~nLv~wa 1120 (1299)
+||+|||+++..............+||..|||||++.+..|+.++|||||||+||||+| |+.||..... ..+...+
T Consensus 197 ~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~---~~~~~~i 273 (329)
T 4aoj_A 197 VKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSN---TEAIDCI 273 (329)
T ss_dssp EEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCH---HHHHHHH
T ss_pred EEECCCCCCEECCCCCCCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCH---HHHHHHH
T ss_conf 8976660333656787530047645565665826544799996630010578999998289999999899---9999999
Q ss_pred HCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 10024434552110488899999135999999999716969689999899999999999651
Q 000757 1121 RPLLTSREGLERIIDPSLGNDVPFDSVAKVAAIASMCVQPEVQHRPFMGEVVQALKLVCNEC 1182 (1299)
Q Consensus 1121 ~plls~~e~L~eIiDp~L~~~~~~ee~~eL~~LI~~CL~~dPseRPSMsEVLq~Lk~I~~e~ 1182 (1299)
.. . .+...+..+..++.+|+.+||+.||++||+|.||++.|+.+.+..
T Consensus 274 ~~----g----------~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~p 321 (329)
T 4aoj_A 274 TQ----G----------RELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQAP 321 (329)
T ss_dssp HH----T----------CCCCCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHSC
T ss_pred HC----C----------CCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHCC
T ss_conf 80----8----------989986446399999999974759657929999999999874588
No 2
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=426.97 Aligned_cols=263 Identities=26% Similarity=0.431 Sum_probs=221.0
Q ss_pred CCCCEEEEEEECCCEEEEEEEEC------CCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEE
Q ss_conf 99215467710473689999953------897899999211343322578998887551244661135414430363589
Q 000757 900 GNFDASRILGEGGFGLVYSGVLD------DGTKVAVKVLKRVDQQGGREFLAEVEMLSRLHHRNLVKLIGICIEEQARCL 973 (1299)
Q Consensus 900 ~~Fsi~eiLGkGaFGtVYkA~l~------dG~~VAVK~Lk~~~~~~~keflrEIeILsrLrHPNIVrLlGv~~e~~~~~L 973 (1299)
++|.+.+.||+|+||+||+|.+. ++..||||+++.......++|.+|+++|++|+|+|||+++|+|.+.+..|+
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 92 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM 92 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEE
T ss_conf 89298249820788299999987766677887999999677785899999999999985899888628799956998999
Q ss_pred EEEECCCCCHHHCCCCCC---------CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEECCCCCCEE
Q ss_conf 996348998100023565---------67888875689999999999998765249995353013456724316875035
Q 000757 974 VYELIPNGSVESHLHGVD---------KESAPLGWDARLKIALGAARALAYLHEDSSPRVIHRDFKSSNILLEHDFTPKV 1044 (1299)
Q Consensus 974 VmEYi~gGSL~d~L~~~~---------~~~~~Lsw~~rlkIalQIA~ALaYLHs~gsp~IVHRDIKPsNILLDedg~VKL 1044 (1299)
|||||++|+|.++|+... .....++|.++++|+.|+++||.|||+.+ |+|||||++||||++++.+||
T Consensus 93 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDlKp~NILl~~~~~~Ki 169 (299)
T 4asz_A 93 VFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQH---FVHRDLATRNCLVGENLLVKI 169 (299)
T ss_dssp EEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEE
T ss_pred EEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEE
T ss_conf 99858999689999860864211123577788999999999999999999997599---046765776389879986898
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-CCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 27775211233335442122136556667520014978721100416999999971-99999999997503468843100
Q 000757 1045 SDFGLARSAMDEESRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVILELLS-GRKPVDMTQPPGQENLVAWARPL 1123 (1299)
Q Consensus 1045 sDFGLAr~~~~~~~~~~st~vvGT~gYmAPEvl~~~~~T~KSDVWSLGVILlELLT-Gk~PFd~s~~~~~~nLv~wa~pl 1123 (1299)
+|||+|+...............||..|||||++.++.|+.++|||||||+||||+| |+.||..... ..+......
T Consensus 170 ~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~---~~~~~~i~~- 245 (299)
T 4asz_A 170 GDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSN---NEVIECITQ- 245 (299)
T ss_dssp CCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCH---HHHHHHHHH-
T ss_pred CCCCCCEECCCCCCEEECCCEECCHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCH---HHHHHHHHC-
T ss_conf 8730010067887416647513470103889870799970366778899999998089999999899---999999980-
Q ss_pred CCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 24434552110488899999135999999999716969689999899999999999651
Q 000757 1124 LTSREGLERIIDPSLGNDVPFDSVAKVAAIASMCVQPEVQHRPFMGEVVQALKLVCNEC 1182 (1299)
Q Consensus 1124 ls~~e~L~eIiDp~L~~~~~~ee~~eL~~LI~~CL~~dPseRPSMsEVLq~Lk~I~~e~ 1182 (1299)
. .+...+..+..++.+|+.+||+.+|++||+|.||++.|+.+.+..
T Consensus 246 ---~----------~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~~ 291 (299)
T 4asz_A 246 ---G----------RVLQRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKAS 291 (299)
T ss_dssp ---T----------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHS
T ss_pred ---C----------CCCCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHCC
T ss_conf ---8----------988997414399999999976879668929999999998777639
No 3
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=1.00 E-value=1 Score=423.03 Aligned_cols=259 Identities=27% Similarity=0.385 Sum_probs=216.3
Q ss_pred CCCCEEEEEEECCCEEEEEEEEC------CCCEEEEEEEECCC-CCCHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEE
Q ss_conf 99215467710473689999953------89789999921134-332257899888755124466113541443036358
Q 000757 900 GNFDASRILGEGGFGLVYSGVLD------DGTKVAVKVLKRVD-QQGGREFLAEVEMLSRLHHRNLVKLIGICIEEQARC 972 (1299)
Q Consensus 900 ~~Fsi~eiLGkGaFGtVYkA~l~------dG~~VAVK~Lk~~~-~~~~keflrEIeILsrLrHPNIVrLlGv~~e~~~~~ 972 (1299)
.++++.+.||+|+||+||+|.+. +++.||||+++... ....++|.+|+.++++++|+|||+++|+|.+.+..+
T Consensus 26 ~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~ 105 (308)
T 4gt4_A 26 SAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLS 105 (308)
T ss_dssp GGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred HHCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEE
T ss_conf 88858669135888489999985776588886999999880149689999999999998589989877364998899889
Q ss_pred EEEEECCCCCHHHCCCCCCC------------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEECCCC
Q ss_conf 99963489981000235656------------788887568999999999999876524999535301345672431687
Q 000757 973 LVYELIPNGSVESHLHGVDK------------ESAPLGWDARLKIALGAARALAYLHEDSSPRVIHRDFKSSNILLEHDF 1040 (1299)
Q Consensus 973 LVmEYi~gGSL~d~L~~~~~------------~~~~Lsw~~rlkIalQIA~ALaYLHs~gsp~IVHRDIKPsNILLDedg 1040 (1299)
+|||||++|+|.++|+.... ....++|.++++|+.|+++||.|||+.+ |+|||||++||||++++
T Consensus 106 lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLK~~NILl~~~~ 182 (308)
T 4gt4_A 106 MIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHH---VVHKDLATRNVLVYDKL 182 (308)
T ss_dssp EEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGG
T ss_pred EEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCCCCEEECCCC
T ss_conf 999818999499999862765433332211112468999999999999999999998689---97787362306887999
Q ss_pred CCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-CCCCCCCCCCCCHHHHHHH
Q ss_conf 503527775211233335442122136556667520014978721100416999999971-9999999999750346884
Q 000757 1041 TPKVSDFGLARSAMDEESRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVILELLS-GRKPVDMTQPPGQENLVAW 1119 (1299)
Q Consensus 1041 ~VKLsDFGLAr~~~~~~~~~~st~vvGT~gYmAPEvl~~~~~T~KSDVWSLGVILlELLT-Gk~PFd~s~~~~~~nLv~w 1119 (1299)
++||+|||+++.....+........+||..|||||++.++.|+.++|||||||+||||+| |+.||..... ..+...
T Consensus 183 ~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~---~~~~~~ 259 (308)
T 4gt4_A 183 NVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSN---QDVVEM 259 (308)
T ss_dssp CEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCH---HHHHHH
T ss_pred CEEECCCCCCEECCCCCCEEEECCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCH---HHHHHH
T ss_conf 78988760202336777404734512577656989982799996300015799999999689999999899---999999
Q ss_pred HHCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 31002443455211048889999913599999999971696968999989999999999
Q 000757 1120 ARPLLTSREGLERIIDPSLGNDVPFDSVAKVAAIASMCVQPEVQHRPFMGEVVQALKLV 1178 (1299)
Q Consensus 1120 a~plls~~e~L~eIiDp~L~~~~~~ee~~eL~~LI~~CL~~dPseRPSMsEVLq~Lk~I 1178 (1299)
+. ...+...+.++...+.+|+.+||+.+|++||+|.||++.|+.+
T Consensus 260 i~--------------~~~~~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~ 304 (308)
T 4gt4_A 260 IR--------------NRQVLPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAW 304 (308)
T ss_dssp HH--------------TTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred HH--------------CCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHC
T ss_conf 98--------------1998999620369999999997587965792999999999853
No 4
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=1.00 E-value=1 Score=415.83 Aligned_cols=274 Identities=24% Similarity=0.360 Sum_probs=222.8
Q ss_pred CCHHHHHHHHCCCCEEEEEEECCCEEEEEEEECC------CCEEEEEEEECCC-CCCHHHHHHHHHHHHHCCC-CCCEEE
Q ss_conf 7978999880992154677104736899999538------9789999921134-3322578998887551244-661135
Q 000757 890 FSASEIEKATGNFDASRILGEGGFGLVYSGVLDD------GTKVAVKVLKRVD-QQGGREFLAEVEMLSRLHH-RNLVKL 961 (1299)
Q Consensus 890 Fs~~ELe~aT~~Fsi~eiLGkGaFGtVYkA~l~d------G~~VAVK~Lk~~~-~~~~keflrEIeILsrLrH-PNIVrL 961 (1299)
++..+++.-.++|++.+.||+|+||+||+|.+.. ++.||||+++... ....+.|.+|+++|++++| +|||++
T Consensus 54 ~~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l 133 (353)
T 4ase_A 54 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 133 (353)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred CCCCCCEECHHHEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 88855170579959820982178959999998688854477599999976235868999999999999975799848778
Q ss_pred EEEEEEC-CCEEEEEEECCCCCHHHCCCCCCC------------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 4144303-635899963489981000235656------------788887568999999999999876524999535301
Q 000757 962 IGICIEE-QARCLVYELIPNGSVESHLHGVDK------------ESAPLGWDARLKIALGAARALAYLHEDSSPRVIHRD 1028 (1299)
Q Consensus 962 lGv~~e~-~~~~LVmEYi~gGSL~d~L~~~~~------------~~~~Lsw~~rlkIalQIA~ALaYLHs~gsp~IVHRD 1028 (1299)
+|+|.+. ...++|||||++|+|.++|+.... ....++|.+++.|+.|+++||.|||+++ |+|||
T Consensus 134 ~g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~---iiHRD 210 (353)
T 4ase_A 134 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK---CIHRD 210 (353)
T ss_dssp EEEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTT---CCCSC
T ss_pred EEEEEECCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC---EECCC
T ss_conf 899994697799999838989799999743566654333410110356899999999999999987676278---43574
Q ss_pred CCCCCEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-CCCCCCC
Q ss_conf 345672431687503527775211233335442122136556667520014978721100416999999971-9999999
Q 000757 1029 FKSSNILLEHDFTPKVSDFGLARSAMDEESRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVILELLS-GRKPVDM 1107 (1299)
Q Consensus 1029 IKPsNILLDedg~VKLsDFGLAr~~~~~~~~~~st~vvGT~gYmAPEvl~~~~~T~KSDVWSLGVILlELLT-Gk~PFd~ 1107 (1299)
||++||||++++.+||+|||+|+..............+||..|||||++.++.|+.++|||||||+||||+| |+.||..
T Consensus 211 LK~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~ 290 (353)
T 4ase_A 211 LAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPG 290 (353)
T ss_dssp CSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTT
T ss_pred CCCCCEEECCCCCEEECCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCEEEHHHHHHHHHHCCCCCCCC
T ss_conf 67211305799978979654322245688720325401466656989994699997553740689999998189999999
Q ss_pred CCCCCHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 999750346884310024434552110488899999135999999999716969689999899999999999651
Q 000757 1108 TQPPGQENLVAWARPLLTSREGLERIIDPSLGNDVPFDSVAKVAAIASMCVQPEVQHRPFMGEVVQALKLVCNEC 1182 (1299)
Q Consensus 1108 s~~~~~~nLv~wa~plls~~e~L~eIiDp~L~~~~~~ee~~eL~~LI~~CL~~dPseRPSMsEVLq~Lk~I~~e~ 1182 (1299)
..... .+.... ....+...+..+..++.+++.+||+.||++||+|.||++.|+.+++..
T Consensus 291 ~~~~~--~~~~~i--------------~~g~~~~~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq~~ 349 (353)
T 4ase_A 291 VKIDE--EFCRRL--------------KEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQAN 349 (353)
T ss_dssp CCCSH--HHHHHH--------------HHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHT
T ss_pred CCHHH--HHHHHH--------------HCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHH
T ss_conf 89899--999999--------------738988888657899999999976869667939999999999999875
No 5
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=412.88 Aligned_cols=265 Identities=27% Similarity=0.438 Sum_probs=213.0
Q ss_pred HHHCCCCEEEEEEECCCEEEEEEEECCCCEEEEEEEECC--CCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEE
Q ss_conf 880992154677104736899999538978999992113--433225789988875512446611354144303635899
Q 000757 897 KATGNFDASRILGEGGFGLVYSGVLDDGTKVAVKVLKRV--DQQGGREFLAEVEMLSRLHHRNLVKLIGICIEEQARCLV 974 (1299)
Q Consensus 897 ~aT~~Fsi~eiLGkGaFGtVYkA~l~dG~~VAVK~Lk~~--~~~~~keflrEIeILsrLrHPNIVrLlGv~~e~~~~~LV 974 (1299)
...++|++.+.||+|+||+||+|++.+ .||||+++.. +....++|.+|++++++++|+|||+++|+|.+ +..++|
T Consensus 33 i~~~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iV 109 (307)
T 3omv_A 33 IEASEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIV 109 (307)
T ss_dssp CCTTSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEE
T ss_pred ECHHHEEEEEEEEECCCCEEEEEEECC--CEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC-CEEEEE
T ss_conf 747994984498208886899999899--68999997268999999999999999985899887469999978-958999
Q ss_pred EEECCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEECCCCCCEECCCCCCCCCC
Q ss_conf 96348998100023565678888756899999999999987652499953530134567243168750352777521123
Q 000757 975 YELIPNGSVESHLHGVDKESAPLGWDARLKIALGAARALAYLHEDSSPRVIHRDFKSSNILLEHDFTPKVSDFGLARSAM 1054 (1299)
Q Consensus 975 mEYi~gGSL~d~L~~~~~~~~~Lsw~~rlkIalQIA~ALaYLHs~gsp~IVHRDIKPsNILLDedg~VKLsDFGLAr~~~ 1054 (1299)
||||+||+|.++|+.. ...++|.++++|+.|+++||+|||+.+ |+|||||++||||++++++||+|||+|+...
T Consensus 110 mEy~~gGsL~~~l~~~---~~~l~~~~~~~i~~qia~gL~yLH~~~---IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~ 183 (307)
T 3omv_A 110 TQWCEGSSLYKHLHVQ---ETKFQMFQLIDIARQTAQGMDYLHAKN---IIHRDMKSNNIFLHEGLTVKIGDFGLATVKS 183 (307)
T ss_dssp EECCSSCBHHHHHHTS---CCCCCHHHHHHHHHHHHHHHHHHHHTT---CBCSCCCSSSEEEETTEEEEECCCSSCBC--
T ss_pred EECCCCCCHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEEECCCCEECC
T ss_conf 9748998788987524---899999999999999999999997799---5278557899788899908994415754246
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 3335442122136556667520014---9787211004169999999719999999999750346884310024434552
Q 000757 1055 DEESRHISTRVMGTFGYVAPEYAMT---GHLLVKSDVYSYGVVILELLSGRKPVDMTQPPGQENLVAWARPLLTSREGLE 1131 (1299)
Q Consensus 1055 ~~~~~~~st~vvGT~gYmAPEvl~~---~~~T~KSDVWSLGVILlELLTGk~PFd~s~~~~~~nLv~wa~plls~~e~L~ 1131 (1299)
...........+||+.|||||++.+ +.|+.++|||||||+||||+||+.||...+... .+.......
T Consensus 184 ~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~--~~~~~~~~~-------- 253 (307)
T 3omv_A 184 RWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRD--QIIFMVGRG-------- 253 (307)
T ss_dssp ----------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHH--HHHHHHHTT--------
T ss_pred CCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH--HHHHHHHCC--------
T ss_conf 6776403156446877249878614689987868775728999999997889989999699--999999658--------
Q ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 110488899999135999999999716969689999899999999999651
Q 000757 1132 RIIDPSLGNDVPFDSVAKVAAIASMCVQPEVQHRPFMGEVVQALKLVCNEC 1182 (1299)
Q Consensus 1132 eIiDp~L~~~~~~ee~~eL~~LI~~CL~~dPseRPSMsEVLq~Lk~I~~e~ 1182 (1299)
...+.+ .....++...+.+|+.+||+.+|++||+|.||++.|+.+....
T Consensus 254 -~~~p~~-~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~l 302 (307)
T 3omv_A 254 -YASPDL-SKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSL 302 (307)
T ss_dssp -CCCCCS-TTSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTTC
T ss_pred -CCCCCC-CCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHCCC
T ss_conf -888872-0035445699999999975779768909899999999974507
No 6
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=406.67 Aligned_cols=254 Identities=23% Similarity=0.325 Sum_probs=210.2
Q ss_pred HCCCCEEEEEEECCCEEEEEEEE-CCCCEEEEEEEECC--CCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEE
Q ss_conf 09921546771047368999995-38978999992113--4332257899888755124466113541443036358999
Q 000757 899 TGNFDASRILGEGGFGLVYSGVL-DDGTKVAVKVLKRV--DQQGGREFLAEVEMLSRLHHRNLVKLIGICIEEQARCLVY 975 (1299)
Q Consensus 899 T~~Fsi~eiLGkGaFGtVYkA~l-~dG~~VAVK~Lk~~--~~~~~keflrEIeILsrLrHPNIVrLlGv~~e~~~~~LVm 975 (1299)
.++|++.+.||+|+||+||+|+. .+|+.||||++... .....++|.+|+++|++|+|+|||++++++.+++..|+||
T Consensus 23 me~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVm 102 (350)
T 4b9d_A 23 MEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVM 102 (350)
T ss_dssp CCCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred CCCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEE
T ss_conf 12558847970277939999998899989999998658789799999999999998779989891999999899999999
Q ss_pred EECCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEECCCCCCEECCCCCCCCCCC
Q ss_conf 63489981000235656788887568999999999999876524999535301345672431687503527775211233
Q 000757 976 ELIPNGSVESHLHGVDKESAPLGWDARLKIALGAARALAYLHEDSSPRVIHRDFKSSNILLEHDFTPKVSDFGLARSAMD 1055 (1299)
Q Consensus 976 EYi~gGSL~d~L~~~~~~~~~Lsw~~rlkIalQIA~ALaYLHs~gsp~IVHRDIKPsNILLDedg~VKLsDFGLAr~~~~ 1055 (1299)
|||+||+|.++|... ....+++.+++.|+.||+.||.|||+++ |+|||||++||||+.++.+||+|||+|+....
T Consensus 103 Ey~~gg~L~~~i~~~--~~~~~~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~ 177 (350)
T 4b9d_A 103 DYCEGGDLFKRINAQ--KGVLFQEDQILDWFVQICLALKHVHDRK---ILHRDIKSQNIFLTKDGTVQLGDFGIARVLNS 177 (350)
T ss_dssp ECCTTCBHHHHHHHT--TTCCCCHHHHHHHHHHHHHHHHHHHHTT---CEETTCCGGGEEECTTCCEEECSTTEESCCCH
T ss_pred ECCCCCCHHHHHHHC--CCCCCCHHHHHHHHHHHHHHHHHHHHCC---EEECCCCHHHEEECCCCCEEECCCCCCEEECC
T ss_conf 488998399999973--8999978999999999999999999899---15135978997987899989764652144068
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEC
Q ss_conf 33544212213655666752001497872110041699999997199999999997503468843100244345521104
Q 000757 1056 EESRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVILELLSGRKPVDMTQPPGQENLVAWARPLLTSREGLERIID 1135 (1299)
Q Consensus 1056 ~~~~~~st~vvGT~gYmAPEvl~~~~~T~KSDVWSLGVILlELLTGk~PFd~s~~~~~~nLv~wa~plls~~e~L~eIiD 1135 (1299)
.. ......+||+.|||||++.+..|+.++|||||||+||||++|+.||...+.. .+.... ..
T Consensus 178 ~~--~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~---~~~~~i---~~---------- 239 (350)
T 4b9d_A 178 TV--ELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMK---NLVLKI---IS---------- 239 (350)
T ss_dssp HH--HHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHH---HHHHHH---HH----------
T ss_pred CC--CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH---HHHHHH---HC----------
T ss_conf 85--4101457883603999987999895999999999999999787998996999---999999---80----------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 88899999135999999999716969689999899999999
Q 000757 1136 PSLGNDVPFDSVAKVAAIASMCVQPEVQHRPFMGEVVQALK 1176 (1299)
Q Consensus 1136 p~L~~~~~~ee~~eL~~LI~~CL~~dPseRPSMsEVLq~Lk 1176 (1299)
... .........++.+|+.+||..||++||++.|+++.-+
T Consensus 240 ~~~-~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~hp~ 279 (350)
T 4b9d_A 240 GSF-PPVSLHYSYDLRSLVSQLFKRNPRDRPSVNSILEKGF 279 (350)
T ss_dssp TCC-CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSHH
T ss_pred CCC-CCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCCHH
T ss_conf 899-9997557999999999985589667908999963997
No 7
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=405.24 Aligned_cols=250 Identities=25% Similarity=0.361 Sum_probs=209.8
Q ss_pred CCCCEEEEEEECCCEEEEEEEE-CCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEC
Q ss_conf 9921546771047368999995-389789999921134332257899888755124466113541443036358999634
Q 000757 900 GNFDASRILGEGGFGLVYSGVL-DDGTKVAVKVLKRVDQQGGREFLAEVEMLSRLHHRNLVKLIGICIEEQARCLVYELI 978 (1299)
Q Consensus 900 ~~Fsi~eiLGkGaFGtVYkA~l-~dG~~VAVK~Lk~~~~~~~keflrEIeILsrLrHPNIVrLlGv~~e~~~~~LVmEYi 978 (1299)
++|++.+.||+|+||.||+|+. .+|+.||||++........+.+.+|+++|++++|+|||++++++.+++.+|||||||
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~ 230 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 230 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred HHCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 84386169624818489999999999899999986255468999999999998579989871689999899999999698
Q ss_pred CCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEECCCCCCEECCCCCCCCCCCCCC
Q ss_conf 89981000235656788887568999999999999876524999535301345672431687503527775211233335
Q 000757 979 PNGSVESHLHGVDKESAPLGWDARLKIALGAARALAYLHEDSSPRVIHRDFKSSNILLEHDFTPKVSDFGLARSAMDEES 1058 (1299)
Q Consensus 979 ~gGSL~d~L~~~~~~~~~Lsw~~rlkIalQIA~ALaYLHs~gsp~IVHRDIKPsNILLDedg~VKLsDFGLAr~~~~~~~ 1058 (1299)
+||+|.+++.. ..+++.++..|+.||+.||+|||+++ |+|||||++||||+.++.+||+|||+|+.+....
T Consensus 231 ~gG~L~~~i~~-----~~l~e~~~~~~~~qil~aL~ylH~~~---IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~- 301 (423)
T 4fie_A 231 EGGALTDIVTH-----TRMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV- 301 (423)
T ss_dssp TTEEHHHHHHH-----SCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSTTTEEECTTCCEEECCCTTCEECCSSC-
T ss_pred CCCCHHHHHHC-----CCCCHHHHHHHHHHHHHHHHHHHHCC---EECCCCCHHHEEECCCCCEEEECCCCCEECCCCC-
T ss_conf 99828988761-----69899999999999999999999889---0446578777898589998980372654777887-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEECCCC
Q ss_conf 44212213655666752001497872110041699999997199999999997503468843100244345521104888
Q 000757 1059 RHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVILELLSGRKPVDMTQPPGQENLVAWARPLLTSREGLERIIDPSL 1138 (1299)
Q Consensus 1059 ~~~st~vvGT~gYmAPEvl~~~~~T~KSDVWSLGVILlELLTGk~PFd~s~~~~~~nLv~wa~plls~~e~L~eIiDp~L 1138 (1299)
......+||+.|||||++.+..|+.++|||||||+||||++|+.||...+... ......... ...+
T Consensus 302 -~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~---~~~~i~~~~----------~~~~ 367 (423)
T 4fie_A 302 -PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLK---AMKMIRDNL----------PPRL 367 (423)
T ss_dssp -CCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH---HHHHHHHSC----------CCCC
T ss_pred -CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH---HHHHHHCCC----------CCCC
T ss_conf -64346664747279999779999968999999999999997879989869999---999997279----------9887
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf 999991359999999997169696899998999999
Q 000757 1139 GNDVPFDSVAKVAAIASMCVQPEVQHRPFMGEVVQA 1174 (1299)
Q Consensus 1139 ~~~~~~ee~~eL~~LI~~CL~~dPseRPSMsEVLq~ 1174 (1299)
.........+.+|+.+||..||++|+++.|+++.
T Consensus 368 --~~~~~~s~~~~dli~~~L~~dP~~R~ta~ell~H 401 (423)
T 4fie_A 368 --KNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKH 401 (423)
T ss_dssp --SCTTSSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred --CCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCC
T ss_conf --6501299999999999867895689099999609
No 8
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=402.88 Aligned_cols=250 Identities=24% Similarity=0.351 Sum_probs=210.0
Q ss_pred CCCCEEEEEEECCCEEEEEEEEC-CCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEC
Q ss_conf 99215467710473689999953-89789999921134332257899888755124466113541443036358999634
Q 000757 900 GNFDASRILGEGGFGLVYSGVLD-DGTKVAVKVLKRVDQQGGREFLAEVEMLSRLHHRNLVKLIGICIEEQARCLVYELI 978 (1299)
Q Consensus 900 ~~Fsi~eiLGkGaFGtVYkA~l~-dG~~VAVK~Lk~~~~~~~keflrEIeILsrLrHPNIVrLlGv~~e~~~~~LVmEYi 978 (1299)
.+|++.+.||+|+||.||+|+.. +|+.||||++........+.+.+|+++|++++|+|||++++++.+++..|||||||
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 153 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 153 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred HHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 75387079602728299999998999899999985276568999999999998679989991999999899999999698
Q ss_pred CCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEECCCCCCEECCCCCCCCCCCCCC
Q ss_conf 89981000235656788887568999999999999876524999535301345672431687503527775211233335
Q 000757 979 PNGSVESHLHGVDKESAPLGWDARLKIALGAARALAYLHEDSSPRVIHRDFKSSNILLEHDFTPKVSDFGLARSAMDEES 1058 (1299)
Q Consensus 979 ~gGSL~d~L~~~~~~~~~Lsw~~rlkIalQIA~ALaYLHs~gsp~IVHRDIKPsNILLDedg~VKLsDFGLAr~~~~~~~ 1058 (1299)
+||+|.+++.. ..+++.++..|+.|++.||+|||+++ |+|||||++||||+.++.+||+|||+|+......
T Consensus 154 ~gg~L~~~l~~-----~~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~- 224 (346)
T 4fih_A 154 EGGALTDIVTH-----TRMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV- 224 (346)
T ss_dssp TTEEHHHHHHH-----SCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEECCSSS-
T ss_pred CCCCHHHHHHC-----CCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEECCCCCEECCCCC-
T ss_conf 99808999871-----89899999999999999999999888---3556278899788799988990275753667887-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEECCCC
Q ss_conf 44212213655666752001497872110041699999997199999999997503468843100244345521104888
Q 000757 1059 RHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVILELLSGRKPVDMTQPPGQENLVAWARPLLTSREGLERIIDPSL 1138 (1299)
Q Consensus 1059 ~~~st~vvGT~gYmAPEvl~~~~~T~KSDVWSLGVILlELLTGk~PFd~s~~~~~~nLv~wa~plls~~e~L~eIiDp~L 1138 (1299)
......+||+.|||||++.+..|+.++|||||||+||||++|+.||...+... ......... ...
T Consensus 225 -~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~---~~~~i~~~~----------~~~- 289 (346)
T 4fih_A 225 -PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLK---AMKMIRDNL----------PPR- 289 (346)
T ss_dssp -CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH---HHHHHHHSS----------CCC-
T ss_pred -CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH---HHHHHHCCC----------CCC-
T ss_conf -75346562758279999779999968999999999999997879989859999---999997179----------998-
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf 999991359999999997169696899998999999
Q 000757 1139 GNDVPFDSVAKVAAIASMCVQPEVQHRPFMGEVVQA 1174 (1299)
Q Consensus 1139 ~~~~~~ee~~eL~~LI~~CL~~dPseRPSMsEVLq~ 1174 (1299)
..........+.+|+.+||..||++|+++.|+++.
T Consensus 290 -~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~H 324 (346)
T 4fih_A 290 -LKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKH 324 (346)
T ss_dssp -CSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred -CCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCC
T ss_conf -87502299999999999867995689099999609
No 9
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=1.00 E-value=1 Score=400.53 Aligned_cols=274 Identities=23% Similarity=0.294 Sum_probs=205.8
Q ss_pred CCCCEEEEEEECCCEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEECC----CEEEEE
Q ss_conf 9921546771047368999995389789999921134332257899888755124466113541443036----358999
Q 000757 900 GNFDASRILGEGGFGLVYSGVLDDGTKVAVKVLKRVDQQGGREFLAEVEMLSRLHHRNLVKLIGICIEEQ----ARCLVY 975 (1299)
Q Consensus 900 ~~Fsi~eiLGkGaFGtVYkA~l~dG~~VAVK~Lk~~~~~~~keflrEIeILsrLrHPNIVrLlGv~~e~~----~~~LVm 975 (1299)
++|.+.+.||+|+||+||+|++. |+.||||+++... .....+++|+..+.+++|+|||+++|+|.+++ ..||||
T Consensus 3 r~i~L~~~iG~G~fG~Vy~~~~~-g~~VAvK~l~~~~-~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~ 80 (303)
T 3hmm_A 3 RTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSRE-ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS 80 (303)
T ss_dssp GGEEEEEEEEECSSSEEEEEEET-TEEEEEEEECGGG-HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred CEEEEEEEEEECCCEEEEEEEEC-CEEEEEEEECCCC-HHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEEEE
T ss_conf 58999789840899399999999-9899999988313-366999999999860899988709999984688723788775
Q ss_pred EECCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC-----CCCCEEEECCCCCCEEECCCCCCEECCCCCC
Q ss_conf 63489981000235656788887568999999999999876524-----9995353013456724316875035277752
Q 000757 976 ELIPNGSVESHLHGVDKESAPLGWDARLKIALGAARALAYLHED-----SSPRVIHRDFKSSNILLEHDFTPKVSDFGLA 1050 (1299)
Q Consensus 976 EYi~gGSL~d~L~~~~~~~~~Lsw~~rlkIalQIA~ALaYLHs~-----gsp~IVHRDIKPsNILLDedg~VKLsDFGLA 1050 (1299)
|||++|+|.++|+. ..++|..+++|+.|+++||+|||+. ..++|+|||||++|||||.++++||+|||+|
T Consensus 81 Ey~~~gsL~~~l~~-----~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla 155 (303)
T 3hmm_A 81 DYHEHGSLFDYLNR-----YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA 155 (303)
T ss_dssp ECCTTCBHHHHHHH-----CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTC
T ss_pred CCCCCCCHHHHHHH-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCEEEEECCCC
T ss_conf 17899968999975-----7999899999999999999999985240047898762467842089988997899847987
Q ss_pred CCCCCCCCC--CCCCCCCCCCCCCCCCCCCCC------CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHC
Q ss_conf 112333354--421221365566675200149------787211004169999999719999999999750346884310
Q 000757 1051 RSAMDEESR--HISTRVMGTFGYVAPEYAMTG------HLLVKSDVYSYGVVILELLSGRKPVDMTQPPGQENLVAWARP 1122 (1299)
Q Consensus 1051 r~~~~~~~~--~~st~vvGT~gYmAPEvl~~~------~~T~KSDVWSLGVILlELLTGk~PFd~s~~~~~~nLv~wa~p 1122 (1299)
+........ ......+||+.|||||++.+. .++.++|||||||+||||+||+.+|........ ....+...
T Consensus 156 ~~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~-p~~~~~~~ 234 (303)
T 3hmm_A 156 VRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQL-PYYDLVPS 234 (303)
T ss_dssp EEEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCC-TTTTTSCS
T ss_pred CCCCCCCCCEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCHHCCCC
T ss_conf 45567777322104642466462698884565455677657067666479999999878998776652235-31002545
Q ss_pred CCCCCCCCCEEECCCCCCCC-----CHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 02443455211048889999-----913599999999971696968999989999999999965
Q 000757 1123 LLTSREGLERIIDPSLGNDV-----PFDSVAKVAAIASMCVQPEVQHRPFMGEVVQALKLVCNE 1181 (1299)
Q Consensus 1123 lls~~e~L~eIiDp~L~~~~-----~~ee~~eL~~LI~~CL~~dPseRPSMsEVLq~Lk~I~~e 1181 (1299)
..........+.+..++... ..++...+.+|+.+||+.||++||||.||++.|+.+.++
T Consensus 235 ~~~~~~~~~~~~~~~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~ 298 (303)
T 3hmm_A 235 DPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ 298 (303)
T ss_dssp SCCHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHH
T ss_conf 4309999998750257998876556658999999999997605975795999999999988987
No 10
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=1.00 E-value=1 Score=398.16 Aligned_cols=251 Identities=24% Similarity=0.323 Sum_probs=210.9
Q ss_pred CCCCEEEEEEECCCEEEEEEEE-CCCCEEEEEEEECC---CCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEE
Q ss_conf 9921546771047368999995-38978999992113---4332257899888755124466113541443036358999
Q 000757 900 GNFDASRILGEGGFGLVYSGVL-DDGTKVAVKVLKRV---DQQGGREFLAEVEMLSRLHHRNLVKLIGICIEEQARCLVY 975 (1299)
Q Consensus 900 ~~Fsi~eiLGkGaFGtVYkA~l-~dG~~VAVK~Lk~~---~~~~~keflrEIeILsrLrHPNIVrLlGv~~e~~~~~LVm 975 (1299)
++|++.+.||+|+||+||+|+. .+++.||||++.+. +....+.+.+|+++|++|+|+|||++++++.+++..|+||
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm 111 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 111 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred CCCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEEE
T ss_conf 23689889831648499999999999899999988888779789999999999998679989891999997389899999
Q ss_pred EECCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEECCCCCCEECCCCCCCCCCC
Q ss_conf 63489981000235656788887568999999999999876524999535301345672431687503527775211233
Q 000757 976 ELIPNGSVESHLHGVDKESAPLGWDARLKIALGAARALAYLHEDSSPRVIHRDFKSSNILLEHDFTPKVSDFGLARSAMD 1055 (1299)
Q Consensus 976 EYi~gGSL~d~L~~~~~~~~~Lsw~~rlkIalQIA~ALaYLHs~gsp~IVHRDIKPsNILLDedg~VKLsDFGLAr~~~~ 1055 (1299)
|||+||+|.+++.. ...+++.+...|+.|++.||.|||+++ |+||||||+||||+.++.+||+|||+|+.+..
T Consensus 112 Ey~~gG~L~~~i~~----~~~l~e~~~~~~~~qi~~al~ylH~~~---IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~ 184 (311)
T 4aw0_A 112 SYAKNGELLKYIRK----IGSFDETCTRFYTAEIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSP 184 (311)
T ss_dssp CCCTTEEHHHHHHH----HSSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTSCEEECCCTTCEECCT
T ss_pred ECCCCCCHHHHHHH----CCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEEECCCCEECCC
T ss_conf 64899899999987----499999999999999999999999887---82687878996985898889987687502577
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEC
Q ss_conf 33544212213655666752001497872110041699999997199999999997503468843100244345521104
Q 000757 1056 EESRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVILELLSGRKPVDMTQPPGQENLVAWARPLLTSREGLERIID 1135 (1299)
Q Consensus 1056 ~~~~~~st~vvGT~gYmAPEvl~~~~~T~KSDVWSLGVILlELLTGk~PFd~s~~~~~~nLv~wa~plls~~e~L~eIiD 1135 (1299)
..........+||+.|||||++.+..|+.++|||||||+||||++|+.||...+.. .+.... ...
T Consensus 185 ~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~---~~~~~i---~~~--------- 249 (311)
T 4aw0_A 185 ESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEG---LIFAKI---IKL--------- 249 (311)
T ss_dssp TTTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHH---HHHHHH---HHT---------
T ss_pred CCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH---HHHHHH---HCC---------
T ss_conf 87765436755680307998976899996898998999999997498998997999---999999---719---------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 8889999913599999999971696968999989999999
Q 000757 1136 PSLGNDVPFDSVAKVAAIASMCVQPEVQHRPFMGEVVQAL 1175 (1299)
Q Consensus 1136 p~L~~~~~~ee~~eL~~LI~~CL~~dPseRPSMsEVLq~L 1175 (1299)
.+ .++.....++.+|+.+||..||++|+++.|++..-
T Consensus 250 -~~--~~p~~~s~~~~dli~~lL~~dp~~R~t~~e~~~~~ 286 (311)
T 4aw0_A 250 -EY--DFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYG 286 (311)
T ss_dssp -CC--CCCTTCCHHHHHHHHHHSCSSGGGSTTSGGGTCHH
T ss_pred -CC--CCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHCCCH
T ss_conf -99--99965699999999997628975780967975877
Done!