BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000758
(1299 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5XJD3|FIP1_DANRE Pre-mRNA 3'-end-processing factor FIP1 OS=Danio rerio GN=fip1l1
PE=1 SV=1
Length = 570
Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 46/71 (64%), Gaps = 4/71 (5%)
Query: 320 GFGMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWK 379
G G GV++ G +P + E D++ FEEKPW+ PG D++D+FN+G NE++WK
Sbjct: 140 GAGAKVKGVDLEAPGSINGVP----VLEADMESFEEKPWRKPGADLSDYFNYGFNEDTWK 195
Query: 380 DYCKQLEQHRL 390
YC++ ++ R+
Sbjct: 196 AYCEKQKRLRM 206
>sp|Q9D824|FIP1_MOUSE Pre-mRNA 3'-end-processing factor FIP1 OS=Mus musculus GN=Fip1l1
PE=1 SV=1
Length = 581
Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 10/85 (11%)
Query: 322 GMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDY 381
G GV++ G +P + EVD+D FE+KPW+ PG D++D+FN+G NE++WK Y
Sbjct: 132 GTKVKGVDLDAPGSINGVP----LLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAY 187
Query: 382 CKQLEQHRL------ETTMQSKIRV 400
C++ ++ R+ T+ +KI V
Sbjct: 188 CEKQKRIRMGLEVIPVTSTTNKITV 212
>sp|Q5U317|FIP1_RAT Pre-mRNA 3'-end-processing factor FIP1 OS=Rattus norvegicus
GN=Fip1l1 PE=1 SV=1
Length = 536
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 10/85 (11%)
Query: 322 GMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDY 381
G GV++ G +P + EVD+D FE+KPW+ PG D++D+FN+G NE++WK Y
Sbjct: 132 GTKVKGVDLDAPGSINGVP----LLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAY 187
Query: 382 CKQLEQHRL------ETTMQSKIRV 400
C++ ++ R+ T+ +KI V
Sbjct: 188 CEKQKRIRMGLEVIPVTSTTNKITV 212
>sp|Q5RAA7|FIP1_PONAB Pre-mRNA 3'-end-processing factor FIP1 OS=Pongo abelii GN=FIP1L1
PE=2 SV=1
Length = 588
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 46/69 (66%), Gaps = 4/69 (5%)
Query: 322 GMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDY 381
G GV++ G +P + EVD+D FE+KPW+ PG D++D+FN+G NE++WK Y
Sbjct: 118 GTKVKGVDLDAPGSINGVP----LLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAY 173
Query: 382 CKQLEQHRL 390
C++ ++ R+
Sbjct: 174 CEKQKRIRM 182
>sp|Q6UN15|FIP1_HUMAN Pre-mRNA 3'-end-processing factor FIP1 OS=Homo sapiens GN=FIP1L1
PE=1 SV=1
Length = 594
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 56/99 (56%), Gaps = 10/99 (10%)
Query: 322 GMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDY 381
G GV++ G +P + EVD+D FE+KPW+ PG D++D+FN+G NE++WK Y
Sbjct: 133 GTKVKGVDLDAPGSINGVP----LLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAY 188
Query: 382 CKQLEQHRL------ETTMQSKIRVYESGRDQPTGRAIQ 414
C++ ++ R+ T+ +KI + + G IQ
Sbjct: 189 CEKQKRIRMGLEVIPVTSTTNKITAEDCTMEVTPGAEIQ 227
>sp|Q09801|FIP1X_SCHPO Pre-mRNA polyadenylation factor fip1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC22G7.10 PE=3 SV=1
Length = 344
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 34/47 (72%)
Query: 343 KTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHR 389
K IFE+D++ F++KPW+ PG DI+D+FN+G +E +W YC + R
Sbjct: 116 KNIFEIDLESFDDKPWRKPGADISDYFNYGFDEFTWAAYCAKQTTLR 162
>sp|Q6FJ55|FIP1_CANGA Pre-mRNA polyadenylation factor FIP1 OS=Candida glabrata (strain
ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=FIP1 PE=3 SV=1
Length = 327
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 9/94 (9%)
Query: 322 GMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDY 381
G SA G+++ GL P + +D + +EKPW+ PG +I+D+FN+G NE +W +Y
Sbjct: 161 GTSAEGIDLDKEGLYNDEP----VSTIDPEVLKEKPWRQPGANISDYFNYGFNEYTWMEY 216
Query: 382 CKQLEQHRLET----TMQSKIRVYESGR-DQPTG 410
+ E+ R E + + + + GR DQP G
Sbjct: 217 LHRQEKLRQEYNPRRILMGLMTLQQQGRLDQPQG 250
>sp|Q6C784|FIP1_YARLI Pre-mRNA polyadenylation factor FIP1 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=FIP1 PE=3 SV=1
Length = 221
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 36/54 (66%)
Query: 343 KTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRLETTMQS 396
K I E +++ FE+KPW+ PG DITD+FN+G +E +W YC + Q R E Q+
Sbjct: 125 KPITEHNLEDFEDKPWRMPGADITDYFNYGFDEFTWMAYCDKQNQIRGEYNPQN 178
>sp|Q869L3|MDN1_DICDI Midasin OS=Dictyostelium discoideum GN=mdn1 PE=3 SV=2
Length = 5900
Score = 34.7 bits (78), Expect = 6.0, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 9/86 (10%)
Query: 1202 PEEPATAVE--------PVDKQSPMADKKDGSNPENTKPVDDRHLDTVEKLKKRSER-FK 1252
PEE T++ P D + P+ K + N D+ D + +
Sbjct: 5282 PEEDQTSLTTNEQQDETPKDSEQPLGVKDKTGSKSNVSNTDEEMKDESNQDNADDDSGMT 5341
Query: 1253 LPMPSEKDTLAIKKMESEPLPSTKSE 1278
P PSE DT A+K ++S+P P + ++
Sbjct: 5342 QPTPSENDTGALKNLKSQPPPQSSAQ 5367
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.129 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 553,097,983
Number of Sequences: 539616
Number of extensions: 27972409
Number of successful extensions: 145685
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 2847
Number of HSP's that attempted gapping in prelim test: 100103
Number of HSP's gapped (non-prelim): 28684
length of query: 1299
length of database: 191,569,459
effective HSP length: 130
effective length of query: 1169
effective length of database: 121,419,379
effective search space: 141939254051
effective search space used: 141939254051
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 67 (30.4 bits)