Query 000759
Match_columns 1299
No_of_seqs 257 out of 1366
Neff 4.1
Searched_HMMs 46136
Date Mon Apr 1 23:13:27 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000759.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000759hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1291 Mn2+ and Fe2+ transpor 100.0 2E-104 5E-109 900.0 21.3 472 10-520 20-498 (503)
2 PRK00701 manganese transport p 100.0 3.1E-76 6.7E-81 684.2 43.4 404 10-459 25-438 (439)
3 COG1914 MntH Mn2+ and Fe2+ tra 100.0 8.9E-73 1.9E-77 649.4 44.3 400 10-459 8-414 (416)
4 TIGR01197 nramp NRAMP (natural 100.0 2.1E-72 4.6E-77 643.8 39.6 365 16-425 1-390 (390)
5 PF01566 Nramp: Natural resist 100.0 1.1E-60 2.4E-65 538.7 33.6 350 38-432 1-358 (358)
6 TIGR00813 sss transporter, SSS 98.8 3.8E-06 8.2E-11 97.7 32.0 120 25-147 11-135 (407)
7 TIGR02119 panF sodium/pantothe 98.8 3.5E-05 7.7E-10 91.5 40.0 118 27-147 50-176 (471)
8 PF00474 SSF: Sodium:solute sy 98.7 2.4E-06 5.1E-11 98.9 26.1 120 28-147 17-139 (406)
9 PRK09442 panF sodium/panthothe 98.7 0.0003 6.5E-09 84.2 42.4 115 30-147 54-177 (483)
10 PRK15419 proline:sodium sympor 98.7 8.5E-05 1.8E-09 89.4 38.1 120 28-147 51-179 (502)
11 PRK12488 acetate permease; Pro 98.7 8.9E-05 1.9E-09 90.4 38.6 122 25-147 75-199 (549)
12 PRK09395 actP acetate permease 98.6 0.00014 3.1E-09 88.6 38.0 122 25-147 77-201 (551)
13 TIGR02711 symport_actP cation/ 98.6 0.00027 5.9E-09 86.2 40.2 122 25-147 75-199 (549)
14 TIGR02121 Na_Pro_sym sodium/pr 98.6 0.00049 1.1E-08 82.6 40.9 119 29-147 48-175 (487)
15 PF03222 Trp_Tyr_perm: Tryptop 98.6 0.00017 3.8E-09 84.7 36.1 158 20-192 4-169 (394)
16 TIGR03648 Na_symport_lg probab 98.4 0.0023 4.9E-08 78.3 40.7 120 25-147 40-164 (552)
17 COG1457 CodB Purine-cytosine p 98.4 0.00088 1.9E-08 80.1 35.4 328 51-446 53-388 (442)
18 COG0591 PutP Na+/proline sympo 98.4 0.0034 7.3E-08 76.1 39.0 126 22-147 40-174 (493)
19 PRK15132 tyrosine transporter 98.3 0.0012 2.6E-08 78.3 33.6 157 20-192 4-169 (403)
20 PRK11017 codB cytosine permeas 98.2 0.0086 1.9E-07 70.8 37.9 95 51-146 43-138 (404)
21 PRK10484 putative transporter; 98.2 0.014 3E-07 71.1 40.6 105 28-135 49-164 (523)
22 PRK11375 allantoin permease; P 98.2 0.0098 2.1E-07 72.1 38.9 50 50-99 60-109 (484)
23 PRK10483 tryptophan permease; 98.2 0.0019 4E-08 77.0 31.7 148 19-186 11-170 (414)
24 PRK13629 threonine/serine tran 98.2 0.0078 1.7E-07 72.3 36.4 150 26-192 26-187 (443)
25 TIGR00837 araaP aromatic amino 98.2 0.0016 3.4E-08 75.2 29.4 65 323-388 262-326 (381)
26 TIGR00814 stp serine transport 98.1 0.0035 7.5E-08 74.2 30.9 48 53-100 33-87 (397)
27 PRK10238 aromatic amino acid t 98.1 0.023 4.9E-07 67.9 37.9 131 1-136 1-134 (456)
28 PRK11387 S-methylmethionine tr 98.1 0.061 1.3E-06 64.4 42.1 33 324-356 284-316 (471)
29 PRK09664 tryptophan permease T 98.1 0.01 2.2E-07 70.9 33.9 154 20-190 10-173 (415)
30 PF01235 Na_Ala_symp: Sodium:a 98.0 0.0027 5.9E-08 75.6 28.1 143 27-184 26-180 (416)
31 PRK15049 L-asparagine permease 98.0 0.085 1.8E-06 64.1 43.7 71 22-96 38-109 (499)
32 TIGR01773 GABAperm gamma-amino 97.9 0.093 2E-06 62.3 41.2 72 22-97 22-94 (452)
33 COG3949 Uncharacterized membra 97.9 0.014 3.1E-07 67.6 30.6 128 14-146 5-133 (349)
34 TIGR00930 2a30 K-Cl cotranspor 97.9 0.048 1E-06 71.3 38.9 29 329-357 386-414 (953)
35 TIGR02358 thia_cytX probable h 97.8 0.1 2.2E-06 61.6 36.7 58 50-107 29-86 (386)
36 PF05525 Branch_AA_trans: Bran 97.8 0.085 1.8E-06 63.5 36.2 79 25-104 9-87 (427)
37 TIGR00910 2A0307_GadC glutamat 97.8 0.16 3.5E-06 61.9 39.2 50 46-96 29-83 (507)
38 TIGR00796 livcs branched-chain 97.8 0.077 1.7E-06 62.9 34.7 73 28-101 4-76 (378)
39 TIGR00800 ncs1 NCS1 nucleoside 97.8 0.024 5.2E-07 67.6 30.3 77 31-108 26-105 (442)
40 TIGR00905 2A0302 transporter, 97.8 0.2 4.3E-06 60.2 40.2 31 326-356 279-309 (473)
41 PRK10580 proY putative proline 97.7 0.25 5.4E-06 59.0 41.9 108 22-133 19-128 (457)
42 TIGR00908 2A0305 ethanolamine 97.6 0.26 5.6E-06 58.4 41.3 38 58-97 52-89 (442)
43 PRK10249 phenylalanine transpo 97.6 0.28 6.2E-06 58.8 41.7 107 22-132 31-139 (458)
44 COG0814 SdaC Amino acid permea 97.6 0.16 3.4E-06 60.8 34.0 87 21-107 11-100 (415)
45 COG4147 DhlC Predicted symport 97.5 0.1 2.2E-06 63.3 29.4 79 69-147 94-173 (529)
46 TIGR00909 2A0306 amino acid tr 97.5 0.41 8.8E-06 56.3 35.4 36 324-359 273-308 (429)
47 PRK10746 putative transport pr 97.4 0.5 1.1E-05 56.9 38.3 73 60-134 57-130 (461)
48 PF02133 Transp_cyt_pur: Perme 97.4 0.019 4.2E-07 67.7 23.1 78 30-108 20-100 (440)
49 PRK11049 D-alanine/D-serine/gl 97.4 0.53 1.1E-05 56.6 41.7 33 324-356 289-321 (469)
50 TIGR00913 2A0310 amino acid pe 97.4 0.53 1.1E-05 56.4 39.9 71 22-97 12-86 (478)
51 TIGR00907 2A0304 amino acid pe 97.4 0.57 1.2E-05 56.3 34.6 30 324-353 299-328 (482)
52 PRK15433 branched-chain amino 97.4 0.65 1.4E-05 56.3 34.7 79 25-104 14-92 (439)
53 PRK10197 gamma-aminobutyrate t 97.4 0.61 1.3E-05 55.8 37.3 37 59-97 38-74 (446)
54 TIGR00835 agcS amino acid carr 97.3 0.27 5.7E-06 59.4 30.5 40 323-363 329-368 (425)
55 COG0733 Na+-dependent transpor 97.3 0.44 9.6E-06 57.6 31.6 72 25-99 13-92 (439)
56 PRK11021 putative transporter; 97.2 0.86 1.9E-05 53.6 37.7 36 59-96 45-80 (410)
57 COG1113 AnsP Gamma-aminobutyra 97.1 0.37 8E-06 58.4 29.1 96 43-142 39-141 (462)
58 TIGR03810 arg_ornith_anti argi 97.1 1.2 2.5E-05 53.6 41.8 40 56-96 45-84 (468)
59 COG4145 PanF Na+/panthothenate 96.9 1.7 3.6E-05 52.0 31.2 118 25-147 47-175 (473)
60 TIGR00911 2A0308 L-type amino 96.8 1.9 4.1E-05 52.3 37.5 36 59-96 90-125 (501)
61 PRK10644 arginine:agmatin anti 96.8 1.8 3.9E-05 51.6 39.7 38 57-96 51-88 (445)
62 PRK11357 frlA putative fructos 96.8 1.9 4.1E-05 51.4 37.9 43 52-96 47-91 (445)
63 TIGR03813 put_Glu_GABA_T putat 96.8 2 4.4E-05 51.7 40.3 66 25-96 9-79 (474)
64 TIGR00912 2A0309 spore germina 96.6 1.9 4.2E-05 49.7 33.2 36 59-97 47-82 (359)
65 COG1115 AlsT Na+/alanine sympo 96.6 2.7 5.9E-05 51.2 30.9 38 323-361 346-383 (452)
66 PF13520 AA_permease_2: Amino 96.2 3.8 8.3E-05 48.0 37.4 36 323-358 266-301 (426)
67 COG1114 BrnQ Branched-chain am 96.1 5.2 0.00011 48.5 33.7 74 25-99 11-84 (431)
68 PRK10836 lysine transporter; P 96.0 5.8 0.00013 48.2 39.1 31 326-356 293-323 (489)
69 PRK10655 potE putrescine trans 95.8 6.1 0.00013 47.0 40.8 34 61-96 53-86 (438)
70 COG0531 PotE Amino acid transp 95.5 7 0.00015 46.0 37.6 29 326-354 283-311 (466)
71 PRK09928 choline transport pro 95.3 11 0.00025 48.2 28.9 86 327-420 406-497 (679)
72 TIGR00906 2A0303 cationic amin 95.3 12 0.00025 46.8 38.8 32 324-355 308-339 (557)
73 KOG1289 Amino acid transporter 94.8 5.2 0.00011 49.8 23.6 28 423-450 446-473 (550)
74 PF00324 AA_permease: Amino ac 94.5 0.76 1.6E-05 55.1 15.5 30 323-352 282-311 (478)
75 COG1953 FUI1 Cytosine/uracil/t 94.4 18 0.00039 45.0 30.0 82 34-115 53-140 (497)
76 PRK10435 cadB lysine/cadaverin 93.9 19 0.0004 43.2 42.4 37 57-96 48-84 (435)
77 PLN03074 auxin influx permease 93.8 22 0.00047 43.8 30.1 62 355-418 336-398 (473)
78 KOG1286 Amino acid transporter 93.7 7.7 0.00017 48.7 22.2 34 327-360 315-351 (554)
79 TIGR03428 ureacarb_perm permea 91.8 38 0.00082 41.2 39.6 43 52-96 53-95 (475)
80 PRK15238 inner membrane transp 91.3 43 0.00094 41.0 39.7 68 25-96 15-87 (496)
81 PF03845 Spore_permease: Spore 90.8 36 0.00077 39.1 30.4 85 55-143 37-128 (320)
82 PF02554 CstA: Carbon starvati 90.6 3 6.6E-05 49.8 12.9 61 35-97 68-132 (376)
83 COG1292 BetT Choline-glycine b 90.4 59 0.0013 41.0 27.9 71 343-420 417-490 (537)
84 KOG2349 Na+:iodide/myo-inosito 89.8 13 0.00029 46.9 18.1 113 30-146 58-175 (585)
85 PF00209 SNF: Sodium:neurotran 89.7 17 0.00037 44.9 18.9 27 326-352 344-370 (523)
86 PRK13108 prolipoprotein diacyl 87.8 32 0.0007 42.5 19.2 17 445-461 231-247 (460)
87 KOG1303 Amino acid transporter 86.8 89 0.0019 38.6 30.6 64 355-420 330-398 (437)
88 COG0833 LysP Amino acid transp 86.8 1E+02 0.0022 39.1 29.9 112 22-145 60-177 (541)
89 COG1966 CstA Carbon starvation 84.6 1.3E+02 0.0028 38.4 33.5 53 43-96 75-131 (575)
90 PF02028 BCCT: BCCT family tra 79.8 1.7E+02 0.0038 36.6 32.1 75 338-420 399-477 (485)
91 PRK15015 carbon starvation pro 79.2 2.1E+02 0.0046 37.3 39.0 58 37-96 101-162 (701)
92 PTZ00206 amino acid transporte 77.0 1.9E+02 0.0042 35.6 32.9 31 71-101 112-143 (467)
93 COG3949 Uncharacterized membra 76.9 39 0.00085 40.4 13.5 82 326-421 77-159 (349)
94 PLN00149 potassium transporter 75.0 2.9E+02 0.0063 36.7 22.3 16 743-758 713-728 (779)
95 TIGR00842 bcct choline/carniti 72.6 2.6E+02 0.0055 35.0 26.3 76 338-420 363-445 (453)
96 PF01490 Aa_trans: Transmembra 71.3 0.23 5.1E-06 57.3 -6.1 21 77-97 66-86 (409)
97 PF12794 MscS_TM: Mechanosensi 68.7 1.1E+02 0.0023 36.4 14.8 17 373-389 131-147 (340)
98 TIGR00844 c_cpa1 na(+)/h(+) an 67.7 4.2E+02 0.0091 35.5 26.3 22 210-231 132-153 (810)
99 PRK03356 L-carnitine/gamma-but 66.9 3.5E+02 0.0076 34.3 28.4 73 340-420 414-493 (504)
100 COG1294 AppB Cytochrome bd-typ 65.4 3.1E+02 0.0068 33.2 22.5 26 196-221 53-81 (346)
101 KOG1304 Amino acid transporter 63.8 3.8E+02 0.0082 33.6 25.1 70 370-441 363-433 (449)
102 KOG1288 Amino acid transporter 63.1 4.8E+02 0.011 34.6 19.9 32 329-360 371-402 (945)
103 PF05313 Pox_P21: Poxvirus P21 61.7 70 0.0015 35.4 10.4 54 392-448 79-133 (189)
104 PF05977 MFS_3: Transmembrane 59.6 4.6E+02 0.0099 33.1 30.1 40 95-135 13-52 (524)
105 PRK09824 PTS system beta-gluco 57.6 2E+02 0.0043 37.3 15.1 99 123-230 205-312 (627)
106 PRK09950 putative transporter; 43.6 8E+02 0.017 31.3 32.7 76 338-420 409-491 (506)
107 PF06738 DUF1212: Protein of u 42.6 98 0.0021 33.1 8.1 10 118-127 115-124 (193)
108 PF06570 DUF1129: Protein of u 39.6 4.8E+02 0.01 28.8 12.9 29 428-457 142-170 (206)
109 PF14362 DUF4407: Domain of un 38.5 1.9E+02 0.0042 33.4 10.1 29 115-143 32-60 (301)
110 KOG2348 Urea transporter [Amin 38.4 1.2E+02 0.0025 38.1 8.4 99 33-132 67-169 (667)
111 TIGR03732 lanti_perm_MutE lant 38.2 3E+02 0.0066 30.9 11.3 61 369-429 12-73 (241)
112 KOG3660 Sodium-neurotransmitte 38.1 1.1E+03 0.023 31.1 24.7 72 16-90 34-111 (629)
113 PRK00293 dipZ thiol:disulfide 38.1 3.6E+02 0.0079 34.4 13.1 47 404-456 336-382 (571)
114 PRK15433 branched-chain amino 37.9 5.1E+02 0.011 32.4 13.9 63 81-143 267-329 (439)
115 TIGR02840 spore_YtaF putative 36.9 3.1E+02 0.0067 30.5 11.0 23 125-147 153-175 (206)
116 PRK09509 fieF ferrous iron eff 36.8 5.7E+02 0.012 29.6 13.5 51 408-458 52-103 (299)
117 KOG1305 Amino acid transporter 36.7 9.1E+02 0.02 29.9 28.0 52 40-93 30-81 (411)
118 PF03169 OPT: OPT oligopeptide 36.6 1E+03 0.022 30.5 20.6 41 379-419 400-440 (624)
119 PRK09509 fieF ferrous iron eff 36.4 7.3E+02 0.016 28.8 14.3 17 161-177 74-90 (299)
120 PRK02983 lysS lysyl-tRNA synth 36.3 8.6E+02 0.019 33.8 16.8 50 404-454 115-164 (1094)
121 PF02990 EMP70: Endomembrane p 35.1 2.6E+02 0.0057 35.1 11.2 13 507-519 482-494 (521)
122 PRK10929 putative mechanosensi 34.8 1.4E+03 0.031 31.9 18.3 13 376-388 607-619 (1109)
123 PRK10263 DNA translocase FtsK; 34.2 1.5E+02 0.0032 41.3 9.3 10 123-132 78-87 (1355)
124 PRK03612 spermidine synthase; 33.5 6.5E+02 0.014 31.7 14.2 47 41-87 24-71 (521)
125 TIGR02854 spore_II_GA sigma-E 32.3 3.8E+02 0.0083 31.3 11.2 15 112-126 40-54 (288)
126 COG1283 NptA Na+/phosphate sym 32.3 1.2E+03 0.026 30.0 21.9 93 327-420 174-268 (533)
127 PF03784 Cyclotide: Cyclotide 31.9 8.5 0.00018 31.0 -1.4 11 1247-1258 2-12 (30)
128 COG4858 Uncharacterized membra 31.7 8.1E+02 0.018 27.8 13.3 80 405-497 134-213 (226)
129 COG2966 Uncharacterized conser 31.7 2.2E+02 0.0049 32.8 9.0 28 117-145 136-163 (250)
130 PLN00151 potassium transporter 31.4 1.5E+03 0.032 30.8 23.8 31 330-360 419-453 (852)
131 PF06664 MIG-14_Wnt-bd: Wnt-bi 31.4 8.8E+02 0.019 28.1 14.6 24 397-420 116-139 (298)
132 COG4858 Uncharacterized membra 31.0 2.2E+02 0.0048 31.9 8.4 18 209-226 196-213 (226)
133 PF13722 DUF4161: C-terminal d 30.8 4.6E+02 0.01 27.4 10.3 28 334-361 12-39 (127)
134 PF05525 Branch_AA_trans: Bran 30.2 1.1E+03 0.024 29.5 15.0 63 81-143 263-326 (427)
135 COG2271 UhpC Sugar phosphate p 29.4 6E+02 0.013 31.9 12.5 99 34-146 224-341 (448)
136 PF05297 Herpes_LMP1: Herpesvi 28.6 20 0.00042 41.9 0.1 16 488-503 175-190 (381)
137 COG3610 Uncharacterized conser 28.3 3.2E+02 0.0069 29.6 8.9 24 188-211 80-103 (156)
138 TIGR00844 c_cpa1 na(+)/h(+) an 28.1 1.6E+03 0.034 30.5 16.6 26 49-74 205-230 (810)
139 PF05297 Herpes_LMP1: Herpesvi 27.5 20 0.00044 41.7 0.0 36 160-195 132-167 (381)
140 KOG1397 Ca2+/H+ antiporter VCX 27.0 4.4E+02 0.0096 32.6 10.6 53 44-100 95-147 (441)
141 COG1230 CzcD Co/Zn/Cd efflux s 26.8 7.7E+02 0.017 29.4 12.4 22 200-221 119-140 (296)
142 PRK11469 hypothetical protein; 26.4 8.1E+02 0.018 27.1 11.8 23 124-146 129-151 (188)
143 PRK09796 PTS system cellobiose 26.2 1.4E+03 0.031 28.9 16.7 56 175-230 255-314 (472)
144 PRK00816 rnfD electron transpo 25.7 2.8E+02 0.0061 33.6 8.8 82 17-137 22-103 (350)
145 PRK11026 ftsX cell division AB 25.5 1.1E+03 0.024 27.8 13.5 63 37-100 166-229 (309)
146 PF11833 DUF3353: Protein of u 24.4 4.1E+02 0.0089 29.6 9.2 42 406-454 119-160 (194)
147 PRK03557 zinc transporter ZitB 24.2 9.2E+02 0.02 28.3 12.5 155 97-262 21-178 (312)
148 KOG2568 Predicted membrane pro 24.2 9.9E+02 0.022 30.7 13.2 25 403-427 340-368 (518)
149 CHL00204 ycf1 Ycf1; Provisiona 24.2 2.9E+02 0.0063 39.6 9.4 27 330-356 33-67 (1832)
150 PRK11281 hypothetical protein; 24.1 1.7E+03 0.036 31.4 16.3 152 328-499 578-732 (1113)
151 KOG1278 Endosomal membrane pro 24.0 1.3E+03 0.029 30.0 14.2 21 365-386 393-413 (628)
152 PF01741 MscL: Large-conductan 23.7 1.1E+02 0.0023 32.0 4.4 54 477-536 70-123 (128)
153 COG5522 Predicted integral mem 23.3 8.2E+02 0.018 28.2 11.0 65 442-507 162-231 (236)
154 PF03419 Peptidase_U4: Sporula 23.0 7.5E+02 0.016 28.7 11.4 17 57-73 10-26 (293)
155 PRK11598 putative metal depend 23.0 9.3E+02 0.02 30.9 13.0 22 125-146 120-141 (545)
156 COG4232 Thiol:disulfide interc 22.7 1.8E+03 0.039 28.8 20.6 69 381-456 315-383 (569)
157 PF02322 Cyto_ox_2: Cytochrome 22.7 1.4E+03 0.029 27.4 22.1 14 196-209 46-59 (328)
158 PF02535 Zip: ZIP Zinc transpo 22.6 1.1E+03 0.024 26.8 12.5 33 38-70 185-217 (317)
159 PRK12821 aspartyl/glutamyl-tRN 22.5 1.7E+03 0.036 28.4 14.6 18 220-237 251-268 (477)
160 PLN00150 potassium ion transpo 21.7 2.1E+03 0.045 29.3 24.3 16 743-758 713-728 (779)
161 COG1283 NptA Na+/phosphate sym 20.8 1.2E+03 0.025 30.1 13.1 38 326-363 46-83 (533)
162 TIGR00341 conserved hypothetic 20.7 1.5E+03 0.033 27.3 15.7 42 82-123 199-244 (325)
163 PF02322 Cyto_ox_2: Cytochrome 20.3 1E+03 0.023 28.3 12.1 28 62-89 168-195 (328)
164 KOG3659 Sodium-neurotransmitte 20.2 2.1E+03 0.045 28.6 20.2 110 326-438 422-543 (629)
165 PLN00148 potassium transporter 20.0 2.3E+03 0.049 29.0 26.9 31 330-360 342-376 (785)
No 1
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-104 Score=900.01 Aligned_cols=472 Identities=30% Similarity=0.450 Sum_probs=415.2
Q ss_pred CCchhHHHHHhhhhhHHhhhhhcccCChHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHhhhhheecCCcHHHHHHhhc
Q 000759 10 YQSGVLYRLVPAVLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEY 89 (1299)
Q Consensus 10 ~~~~~~rkLLa~LGPGfLmSIAyIDPGNIaTdlqAGA~fGY~LLWVLLLAtIl~~llQeLAARLGVVTGK~LAEicRe~Y 89 (1299)
.++..|||+|+|+|||||||+||+||||++||+|+||++||+|||+++++|++++++|++|||||+||||||||+||++|
T Consensus 20 ~~~~s~~k~~~F~GPGfLmSIAYlDPGN~etdlqaGA~~~YkLLwilL~a~~~alllQ~LaARLGvVTG~hLAe~Cr~~Y 99 (503)
T KOG1291|consen 20 PPKFSWRKLWKFTGPGFLMSIAYLDPGNIETDLQAGARAGYKLLWILLLANFMALLLQRLAARLGVVTGKHLAEICREEY 99 (503)
T ss_pred ccchHHHHHHHHcCCceEEEEEEecCCcchhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHc
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhhcCcchhhHHHHhhhhhhHHHHHHH
Q 000759 90 DKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLFIDELIMLNFQENYKAKLLW 169 (1299)
Q Consensus 90 pk~~~~~LwI~aeLAIIasDIaEVIGtAIALNLLFGIPL~iGVLITavdt~lLL~lgs~~~~d~~~~~~y~G~RKlE~l~ 169 (1299)
|||+++.||+++|+|+|++|||||||+|+|+|+||++|+|+||+||++|+|+|+++.+ +|.||+|.++
T Consensus 100 pk~~~~~Lwi~aEiAiI~sDiqEVIGTAiAlniL~~IPL~~GVliTilD~f~fL~l~k------------yGiRklE~~~ 167 (503)
T KOG1291|consen 100 PKWPRMVLWIMAEIAIIASDIQEVIGTAIALNILSNIPLWAGVLITILDTFLFLFLDK------------YGIRKLEAFF 167 (503)
T ss_pred cccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhc------------cchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999887 5999999999
Q ss_pred HHHHHHHHHHHHHhHhhhCCCccccc-cccccccC---CChHHHHHHHhcccchhHHHHHhHHhhhhccccccccchhch
Q 000759 170 ICTAGIILLSYVLGVLISQPEIPLSV-NGMLTKFS---GDSAFSIMSLLGASMMPHNFYLHSSIVRRHQGQVNISKGALC 245 (1299)
Q Consensus 170 ~~LI~IM~L~FVv~afis~Pd~geVl-~GLvP~lp---g~sl~~aVALLGATIMPhNlYLHSaLVqsR~~~~~~~k~al~ 245 (1299)
.+++.+|++||.+++..++|+.++++ +|++|++. ++.+++++|++||||||||+||||++||+|+.+++.+++...
T Consensus 168 ~~Li~~mai~F~~el~~~kp~~~~~l~g~fvP~~~~~~~~~~~~avgilGA~IMPHnlyLhSaLV~sR~~d~~~~~~v~e 247 (503)
T KOG1291|consen 168 AFLIVTMAISFGVELGVSKPSGGELLFGGFVPSLSGCGSEGLYQAVGILGAVIMPHNLYLHSALVQSRLIDRDVKKGVYE 247 (503)
T ss_pred HHHHHHHHHHHheeEEEecCCchheeeeeecccccCCCCcHHHHHHHHhceeeccchhhhhhhhhcccccCHhhhhhhHH
Confidence 99999999999999999999999876 55679987 678999999999999999999999999999988764333222
Q ss_pred hhH-HHHH-HHHHHHHHHHHHHHHHHh-hhccccCCcccccHHHHHHHHHHhhhhcccccCcccccccccchhhhhhhhh
Q 000759 246 HDH-FFAI-LCIFSGIYMVNYVLMNSA-ANLFYSTGLVLLTFQDAMSLMEQLFAYSFCSNNNYHLLHTHPMISIRIVEMQ 322 (1299)
Q Consensus 246 ~D~-~~~i-~~i~lgsfLINlaImiva-AavLygtGi~V~T~~DAa~aLepL~ag~fc~~~~~~ll~~~~l~a~glv~a~ 322 (1299)
.+. +... ...+.++|.||.+++.++ |+.||++. ..+... .|.++. +.....+++++|.++..
T Consensus 248 a~~y~~ies~ial~vsF~in~~VisvF~a~~f~~~t-----~~~v~g---------~~~~~s-~~a~~~Dl~~~~~~L~~ 312 (503)
T KOG1291|consen 248 ANNYFPIESAIALFVSFSINLFVISVFTAAGFYNKT-----ILDVAG---------ACLYNS-NEADDADLFSAGLLLQC 312 (503)
T ss_pred hhhcccHHHHHHHHHHHHHHHHHHHHHHHhhhcCcc-----hhhhhh---------hhhcCC-CcchhhhhHHHHHHHHH
Confidence 222 2221 122346899999999999 99998763 222222 122221 11111245667777777
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhCCCcCcchHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHH
Q 000759 323 VFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQV 402 (1299)
Q Consensus 323 ~LgG~~A~~IFAIGLLAAGqSSTITgT~AGQ~VmeGFLgl~~~~w~rrLitRlIAIIPALiVal~~G~~~~~qLLi~aQV 402 (1299)
.+ |++++++|++|||||||||||||||+||+|||||++|++++|.|+++||++||+|+++|+++.|.+++.+|++++||
T Consensus 313 ~~-g~~a~~Ifai~lLasGQSstitgTyaGQ~VmeGFLn~~l~~W~r~liTR~iAIiPtL~va~~~g~~~l~~l~~~~nv 391 (503)
T KOG1291|consen 313 YF-GPAALYIFAIGLLASGQSSTITGTYAGQFVMEGFLNLKLPPWLRRLITRSIAIIPTLIVALTSGEDGLSGLNDFLNV 391 (503)
T ss_pred Hh-ccHHHHHHHHHHHHCCCcccceeeeeeeEeecccccccchHHHHHHHHHHHHHHhhhheeeeeCcccHHHHHHHHHH
Confidence 77 69999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHhccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCccchhHHHH
Q 000759 403 MVAIMLPSSVIPLFRVASSRQIMGVHKISQYHEFLVLITFMGMLGLKLIFMVEMIFGNSDWVGNLRWNSGGTVALPFAVF 482 (1299)
Q Consensus 403 I~SL~LPFaLIPLL~ftNsr~IMGefrNs~~~nILawli~llIi~LNI~fVv~~ifg~s~w~~~l~~~~~~~~~~~~~vl 482 (1299)
+++++|||+++|+++|+++|+|||+|+|+...+.++|.+.++++.+|.||+++++.. + .+.-+..+..+
T Consensus 392 l~S~~LPFa~iPLl~ftS~r~IM~~~~~~~~~~~~~~~~~~~~~~in~y~~v~~~~~-------~----~~~~~~~~~~~ 460 (503)
T KOG1291|consen 392 LQSLQLPFAVIPLLTFTSSRKIMGVFKNGLVTEELTWTVAALVLGINGYFLVSFFWS-------L----VGKHSKIVVTV 460 (503)
T ss_pred HHHHhhhHHHhhHHhhhccHHHhhhhccCccceeeeehheeeeeeeeeEEeeeehhh-------h----cCCceeeehhH
Confidence 999999999999999999999999999999999999999999999999999866531 1 12122345566
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccCCCCCCccccccc
Q 000759 483 LITTFTSLCLMLWLATTPLRSASSRNNAPDWSWEFQRA 520 (1299)
Q Consensus 483 ~i~~~~yl~f~lyL~~~pl~s~~~~~~~~~~~~~~~~~ 520 (1299)
.+.+++|++|++||+.+|++..+...+++.|+++.++.
T Consensus 461 ~~~~~~y~~~i~yL~~~~l~~~~~~~~~~~~~~~~~~~ 498 (503)
T KOG1291|consen 461 NVWTLAYLAFILYLAATCLNAYSIISLAMSSSMHAQNA 498 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhcccc
Confidence 66788999999999999999999999999999999986
No 2
>PRK00701 manganese transport protein MntH; Reviewed
Probab=100.00 E-value=3.1e-76 Score=684.20 Aligned_cols=404 Identities=28% Similarity=0.492 Sum_probs=366.9
Q ss_pred CCchhHHHHHhhhhhHHhhhhhcccCChHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHhhhhheecCCcHHHHHHhhc
Q 000759 10 YQSGVLYRLVPAVLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEY 89 (1299)
Q Consensus 10 ~~~~~~rkLLa~LGPGfLmSIAyIDPGNIaTdlqAGA~fGY~LLWVLLLAtIl~~llQeLAARLGVVTGK~LAEicRe~Y 89 (1299)
+.+..||++++++||||+++++|+||||++|++|+||+|||+|||++++++++++++|++++|+|++|||+|+|+||++|
T Consensus 25 ~~~~~~~~~l~~lGPG~l~a~a~idpG~i~t~~~aGA~~Gy~LLW~llls~~~~~~~Q~~~~RlgivTG~~l~~~ir~~~ 104 (439)
T PRK00701 25 SGRSFWKRLLAFLGPAFLVAVGYMDPGNWATNIQGGSQFGYTLLWVILLSNLMAMLLQSLSAKLGIATGRDLAQACRDRY 104 (439)
T ss_pred CcchhHHHHHHHcCcHHHhhhheecchHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHHHC
Confidence 45677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhhcCcchhhHHHHhhhhhhHHHHHHH
Q 000759 90 DKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLFIDELIMLNFQENYKAKLLW 169 (1299)
Q Consensus 90 pk~~~~~LwI~aeLAIIasDIaEVIGtAIALNLLFGIPL~iGVLITavdt~lLL~lgs~~~~d~~~~~~y~G~RKlE~l~ 169 (1299)
||++++++|+.+++++++++++|++|+|+|+|++||+|++++++++++++++++++.+ .++|++|+++
T Consensus 105 ~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll~gip~~~~v~i~~~~~~~~l~l~~------------~~y~~~E~i~ 172 (439)
T PRK00701 105 PRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLFGIPLLQGALITALDTFLILMLQR------------RGFRPLEAII 172 (439)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHh------------cCccHHHHHH
Confidence 9999999999999999999999999999999999999999999999988887765432 3457899999
Q ss_pred HHHHHHHHHHHHHhHhhhCCCccccccccccc---cCC-ChHHHHHHHhcccchhHHHHHhHHhhhhcccccc--cc---
Q 000759 170 ICTAGIILLSYVLGVLISQPEIPLSVNGMLTK---FSG-DSAFSIMSLLGASMMPHNFYLHSSIVRRHQGQVN--IS--- 240 (1299)
Q Consensus 170 ~~LI~IM~L~FVv~afis~Pd~geVl~GLvP~---lpg-~sl~~aVALLGATIMPhNlYLHSaLVqsR~~~~~--~~--- 240 (1299)
.+++++|.+||+++++.++|||+++++|++|+ +|. +.++.++|++||||||||+|+||+++++|+.+.. ..
T Consensus 173 ~~lv~~m~l~f~~~~~~~~P~~~~v~~Gl~P~~~~~p~~~~~~~~iaiiGttv~P~~~f~~ss~v~~k~~~~~~~~~~~~ 252 (439)
T PRK00701 173 GGLLLVIAAAFIVELFLAQPDWAAVLKGFIPSSEILPNPEALYLAAGILGATVMPHNLYLHSSLVQTRVVGRTGEEKREA 252 (439)
T ss_pred HHHHHHHHHHHHHHHheeCCCHHHHhcccCCCCcCCCCccHHHHHHHHHHHHHhHHHHHHHHHHHHhccccCChHhHHHH
Confidence 98999999999999999999999999998899 874 5678899999999999999999999988753211 11
Q ss_pred chhchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcc-cccHHHHHHHHHHhhhhcccccCcccccccccchhhhhh
Q 000759 241 KGALCHDHFFAILCIFSGIYMVNYVLMNSAANLFYSTGLV-LLTFQDAMSLMEQLFAYSFCSNNNYHLLHTHPMISIRIV 319 (1299)
Q Consensus 241 k~al~~D~~~~i~~i~lgsfLINlaImivaAavLygtGi~-V~T~~DAa~aLepL~ag~fc~~~~~~ll~~~~l~a~glv 319 (1299)
.+..+.|...++ +.++++|.+|++++|.+||++|.. +.+..|++++|+|
T Consensus 253 l~~~r~Dt~~g~----~i~~li~~ai~v~~A~~l~~~g~~~~~~~~~~a~~L~p-------------------------- 302 (439)
T PRK00701 253 LRFTRIDSAIAL----TIAGFVNAAMLILAAAAFHASGHTDVADIEDAYLLLSP-------------------------- 302 (439)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhccCCCCCcCCHHHHHHHHHH--------------------------
Confidence 122345666554 346899999999999999998875 7899999999999
Q ss_pred hhhhcccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhCCCcCcchHHHHHHHHHHHHHHHHHHHhCchhHHHHHHH
Q 000759 320 EMQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIF 399 (1299)
Q Consensus 320 ~a~~LgG~~A~~IFAIGLLAAGqSSTITgT~AGQ~VmeGFLgl~~~~w~rrLitRlIAIIPALiVal~~G~~~~~qLLi~ 399 (1299)
.+ |++++++|++|||+|||+|++++++++++++++|++|+.++|.|++++++++++|+++++++.+..+|.+++++
T Consensus 303 ---~~-G~~a~~lFaiGL~aag~sS~i~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~ii~a~~~~~~~~~~~p~~lli~ 378 (439)
T PRK00701 303 ---LL-GAAAATLFGIALLASGLSSTVVGTLAGQIVMEGFLRLRIPLWVRRLITRGLAMVPALIVILLGGELDPTRLLVL 378 (439)
T ss_pred ---HH-hHHHHHHHHHHHHHhHhHHHhHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 45 69999999999999999999999999999999999999999999999999999999987765543459999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHhccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000759 400 TQVMVAIMLPSSVIPLFRVASSRQIMGVHKISQYHEFLVLITFMGMLGLKLIFMVEMIFG 459 (1299)
Q Consensus 400 aQVI~SL~LPFaLIPLL~ftNsr~IMGefrNs~~~nILawli~llIi~LNI~fVv~~ifg 459 (1299)
+||+++++|||+++|+++++|+|++||+|+|+++.|+++|+++++++++|++++++.++|
T Consensus 379 aqv~~~i~LP~~~~~ll~l~~~~~imG~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~ 438 (439)
T PRK00701 379 SQVVLSFGLPFALIPLLLFTSDRKLMGELVNPRWVKIIAWIIAVLIVALNIYLLYQTFTG 438 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999999999999999999988764
No 3
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.9e-73 Score=649.41 Aligned_cols=400 Identities=28% Similarity=0.435 Sum_probs=363.1
Q ss_pred CCchhHHHHHhhhhhHHhhhhhcccCChHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHhhhhheecCCcHHHHHHhhc
Q 000759 10 YQSGVLYRLVPAVLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEY 89 (1299)
Q Consensus 10 ~~~~~~rkLLa~LGPGfLmSIAyIDPGNIaTdlqAGA~fGY~LLWVLLLAtIl~~llQeLAARLGVVTGK~LAEicRe~Y 89 (1299)
.....||++++++||||||++||+|||||+|++|+|++|||+|+|++++++++++++|++++|||+||||+|+|.||++|
T Consensus 8 ~~~~~~~~~l~~lGPg~lva~a~iDpg~~at~~~~Ga~~Gy~ll~vills~l~~~~~Q~~~arLgivTG~~laq~ir~~y 87 (416)
T COG1914 8 KKRSTLRKLLALLGPGFLVAVAYVDPGNIATSAQAGAQYGYSLLWVILLSNLMAYILQELSARLGIVTGKGLAEAIRERY 87 (416)
T ss_pred chHHHHHHHHHhhCcHHHHHHhccCchhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHc
Confidence 44678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhhcCcchhhHHHHhhhhhhHHHHHHH
Q 000759 90 DKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLFIDELIMLNFQENYKAKLLW 169 (1299)
Q Consensus 90 pk~~~~~LwI~aeLAIIasDIaEVIGtAIALNLLFGIPL~iGVLITavdt~lLL~lgs~~~~d~~~~~~y~G~RKlE~l~ 169 (1299)
++++++++|+.++++++++|++|++|+|+|+|++||+|+.++++++++++++++.+. +.|++|+++
T Consensus 88 ~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~~ip~~~g~iItav~~~iil~~~--------------~~r~~E~~v 153 (416)
T COG1914 88 LPGLGILLWILAEIAGIATDIAEVAGIAIALNLLFGIPLIIGAVITAVDVLIILLLK--------------GYRLLERVV 153 (416)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhc--------------chHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999888653 457899999
Q ss_pred HHHHHHHHHHHHHhHhhhCCCccccccc-cccccCC-ChHHHHHHHhcccchhHHHHHhHHhhhhccccccccchhch--
Q 000759 170 ICTAGIILLSYVLGVLISQPEIPLSVNG-MLTKFSG-DSAFSIMSLLGASMMPHNFYLHSSIVRRHQGQVNISKGALC-- 245 (1299)
Q Consensus 170 ~~LI~IM~L~FVv~afis~Pd~geVl~G-LvP~lpg-~sl~~aVALLGATIMPhNlYLHSaLVqsR~~~~~~~k~al~-- 245 (1299)
..++.++.+||++++++++|+|+++.++ ++|+.+. +.++.++|++|||||||++|+||++|+++...++..+++.+
T Consensus 154 ~~l~~~~~i~~~~~~~~~~p~~~~~~~~~f~P~~~~~~~l~~ii~ilGaTVmP~i~y~~s~~v~~~~~~~~~~~~~~~~~ 233 (416)
T COG1914 154 LILGLVLVILFVYVAFVAPPPWGEVAKGDFLPSSPWTEALLLIIAILGATVMPHILYLHSSLVQDAGIKGEENLRALRYS 233 (416)
T ss_pred HHHHHHHHHHHHHHHhhcCCCHHHHhccCCCCCCcchhHHHHHHHHhccchhHHHHHhhcceeccccccchhHHHHHHHH
Confidence 9999999999999999999999999999 6798876 78899999999999999999999999973322222233333
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCc--ccccHHHHHHHHHHhhhhcccccCcccccccccchhhhhhhhh
Q 000759 246 -HDHFFAILCIFSGIYMVNYVLMNSAANLFYSTGL--VLLTFQDAMSLMEQLFAYSFCSNNNYHLLHTHPMISIRIVEMQ 322 (1299)
Q Consensus 246 -~D~~~~i~~i~lgsfLINlaImivaAavLygtGi--~V~T~~DAa~aLepL~ag~fc~~~~~~ll~~~~l~a~glv~a~ 322 (1299)
.|.+.++ ...+++|+++++++|..+|.++. .+.+..+++..+.|
T Consensus 234 ~~d~~i~~----~~a~lv~~ail~~aa~~~~~~~~~~~~~~~~~a~~~l~~----------------------------- 280 (416)
T COG1914 234 RIDTIIGM----IIALLVNLAILIVAAAGFHNSGPNQDVADAYDAYLLLAP----------------------------- 280 (416)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHhhcCCCccccccchHHHHHHhhh-----------------------------
Confidence 3544443 25689999999999999998874 45677777776666
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhCCCcCcchHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHH
Q 000759 323 VFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQV 402 (1299)
Q Consensus 323 ~LgG~~A~~IFAIGLLAAGqSSTITgT~AGQ~VmeGFLgl~~~~w~rrLitRlIAIIPALiVal~~G~~~~~qLLi~aQV 402 (1299)
.+ |..+..+|++++++||++|+++++|++|++|++|++++.+.|.|++++|+++++|++++.+++| +|.++++++|+
T Consensus 281 ~~-G~~~~~lF~v~llasg~~s~~~~~~a~~~~~~g~~~~~~~~~~r~~i~~~~~~ip~~~i~i~~g--~~~~lL~~sqv 357 (416)
T COG1914 281 LL-GSAAFVLFGVALLAAGLSSTVVATYAGQIVMEGFLNWRIPLWRRRLITRTFAIVPGLAIIILFG--DPARLLVFSQV 357 (416)
T ss_pred hh-hhHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHhhhcccCchHhhHHHHHHHHHHHHHHHHHHHc--cHHHHHHHHHH
Confidence 45 5899999999999999999999999999999999999999999999999999999988888888 59999999999
Q ss_pred HHHHHHhHHHHHHHHHHhccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000759 403 MVAIMLPSSVIPLFRVASSRQIMGVHKISQYHEFLVLITFMGMLGLKLIFMVEMIFG 459 (1299)
Q Consensus 403 I~SL~LPFaLIPLL~ftNsr~IMGefrNs~~~nILawli~llIi~LNI~fVv~~ifg 459 (1299)
+++++|||+++|++.++++|++||+|+|++|.++++|+++++++.+|+++++..+++
T Consensus 358 l~~~~lP~~~~~ll~~~~~k~~mg~~~~~~~~~~~~~~v~~~i~~L~i~li~~~~~~ 414 (416)
T COG1914 358 LLSVILPFALIPLLLLTSDKKLMGDYKNPRWLTVLGWIVVILIVALNIILLVGTLGG 414 (416)
T ss_pred HHHHHHHHHHHHHHHHHcChhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999988764
No 4
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=100.00 E-value=2.1e-72 Score=643.81 Aligned_cols=365 Identities=28% Similarity=0.482 Sum_probs=326.6
Q ss_pred HHHHhhhhhHHhhhhhcccCChHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHhhhhheecCCcHHHHHHhhcCcchhh
Q 000759 16 YRLVPAVLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCV 95 (1299)
Q Consensus 16 rkLLa~LGPGfLmSIAyIDPGNIaTdlqAGA~fGY~LLWVLLLAtIl~~llQeLAARLGVVTGK~LAEicRe~Ypk~~~~ 95 (1299)
|++|+++|||++++++|+|||||+|++|+||+|||+|||++++++++++++|+|++|+|+||||+|+|.||++|||+.++
T Consensus 1 ~~~l~~lGPg~lva~a~idPG~i~t~~~aGa~fGy~LLW~llls~~~~~~~Q~~aaRlg~vTg~~l~~~~r~~~~~~~~~ 80 (390)
T TIGR01197 1 RKLWAFIGPGFLMSIAYIDPGNYSTDLQAGAAAGYKLLWVLLLSNIMALLLQRLCARLGVVTGLDLAEVCREHYPKVPRI 80 (390)
T ss_pred CcHHHHhChHHHHHHHhcCchHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHheeecCCCHHHHHHHHCCCchHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhhcCcchhhHHHHhhhhhhHHHHHHHHHHHHH
Q 000759 96 FIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLFIDELIMLNFQENYKAKLLWICTAGI 175 (1299)
Q Consensus 96 ~LwI~aeLAIIasDIaEVIGtAIALNLLFGIPL~iGVLITavdt~lLL~lgs~~~~d~~~~~~y~G~RKlE~l~~~LI~I 175 (1299)
.+|++++++++++|++|++|+|+|+|++||+|+|++++++++++++++++.+ .++|++|+++.+++++
T Consensus 81 ~~~~~~~l~ii~~~~~e~~G~a~al~ll~g~p~~~~v~~~~~~~~~~~~~~~------------~~yr~~E~~~~~lv~~ 148 (390)
T TIGR01197 81 TLWILAELAIIATDMAEVIGTAIALNLLSHIPLWGGVLITIVDVFLFLFLDK------------PGLRILEAFVALLVTI 148 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHh------------CCceeHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998887776655433 3567899999999999
Q ss_pred HHHHHHHhHhhhCCCccccccc-cccccC---CChHHHHHHHhcccchhHHHHHhHHhhhhccccccccch--h------
Q 000759 176 ILLSYVLGVLISQPEIPLSVNG-MLTKFS---GDSAFSIMSLLGASMMPHNFYLHSSIVRRHQGQVNISKG--A------ 243 (1299)
Q Consensus 176 M~L~FVv~afis~Pd~geVl~G-LvP~lp---g~sl~~aVALLGATIMPhNlYLHSaLVqsR~~~~~~~k~--a------ 243 (1299)
|.+||++++++++|||+++++| ++|++| .++++.++|++||||||||+|+||++|++|+.+++...+ +
T Consensus 149 m~~~f~~~~~~~~P~~~~~~~g~~vP~~p~~~~~~~~~~vaiiGttv~p~~~fl~s~lv~~r~~~~~~~~~~~~~~~~~~ 228 (390)
T TIGR01197 149 VAICFAYELFYAKPGQVKVLFGGFVPSCAVFGTDGLLQAVGILGATVMPHSLYLHSALVQSRLVDRDVKEGVSEANMYRP 228 (390)
T ss_pred HHHHHHHHHheeCCCHHHHhhcccCCCccCCCCchHHHHHHHHhhhhhHHHHHHHHHhhhccccCcccchhhhhhhhhch
Confidence 9999999999999999999988 569765 467888999999999999999999999999865432111 1
Q ss_pred -----------chhhHHHHHHHHHHHHHHHHHHHHHHhhhccccC-C-cccccHHHHHHHHHHhhhhcccccCccccccc
Q 000759 244 -----------LCHDHFFAILCIFSGIYMVNYVLMNSAANLFYST-G-LVLLTFQDAMSLMEQLFAYSFCSNNNYHLLHT 310 (1299)
Q Consensus 244 -----------l~~D~~~~i~~i~lgsfLINlaImivaAavLygt-G-i~V~T~~DAa~aLepL~ag~fc~~~~~~ll~~ 310 (1299)
.+.|...++ +.+.+++|.++++++|+++|++ + .+..+..|++.+|+|
T Consensus 229 ~~~~~~~~~~~~~~d~~~~i---~~~~~~v~~~ilv~aaa~l~~~~~~~~~~~~~~~~~~L~p----------------- 288 (390)
T TIGR01197 229 IEAAIALSVSFSINEFVIAL---FTAALFVNTNILVVAGATLFNSNNNADAADLFSIGVLLGC----------------- 288 (390)
T ss_pred hHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhccCCCCcCcCCHHHHHHHHHH-----------------
Confidence 122443332 2345668999999999999975 5 567788999999999
Q ss_pred ccchhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhCCCcCcchHHHHHHHHHHHHHHHHHHHhCc
Q 000759 311 HPMISIRIVEMQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSGA 390 (1299)
Q Consensus 311 ~~l~a~glv~a~~LgG~~A~~IFAIGLLAAGqSSTITgT~AGQ~VmeGFLgl~~~~w~rrLitRlIAIIPALiVal~~G~ 390 (1299)
.+ |++++++|++|||+|||||++|+++++|++|+||+||+.++|.|++++|+++++|+++++++.|.
T Consensus 289 ------------~~-G~~a~~lF~igLlaAG~sS~it~~~ag~~v~~gfl~~~~~~~~r~~~~~~~~ii~aliv~~~~g~ 355 (390)
T TIGR01197 289 ------------LF-SPAAGYIFAVGLLAAGQSSGMVGTYSGQFVMEGFLNWRWSPWLRRLITRAIAIIPCLLVAAFGGR 355 (390)
T ss_pred ------------Hh-hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45 68999999999999999999999999999999999999999999999999999999988877665
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccc
Q 000759 391 EGVYQLLIFTQVMVAIMLPSSVIPLFRVASSRQIM 425 (1299)
Q Consensus 391 ~~~~qLLi~aQVI~SL~LPFaLIPLL~ftNsr~IM 425 (1299)
.+|.++++++||+|+++|||+++|+++++|+|++|
T Consensus 356 ~~p~~liv~aQv~~~l~LP~~~i~Ll~~~~~k~lM 390 (390)
T TIGR01197 356 EGLTGALNASQVVLSLLLPFALIPLIMFTSSKKIM 390 (390)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 67999999999999999999999999999999998
No 5
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=100.00 E-value=1.1e-60 Score=538.72 Aligned_cols=350 Identities=28% Similarity=0.433 Sum_probs=318.8
Q ss_pred HHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHhhhhheecCCcHHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 000759 38 WAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSVILLDLTMVLGIA 117 (1299)
Q Consensus 38 IaTdlqAGA~fGY~LLWVLLLAtIl~~llQeLAARLGVVTGK~LAEicRe~Ypk~~~~~LwI~aeLAIIasDIaEVIGtA 117 (1299)
|+|++|+||+|||+|+|++++++++++++|++++|+|++|||+|+|+||++|||++.+++|+.+++++++++++|++|+|
T Consensus 1 ~~t~~~aGA~~Gy~Llw~lll~~~~~~~~q~~~~R~~~~Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a 80 (358)
T PF01566_consen 1 IATATQAGAQYGYSLLWVLLLSNLLKYVFQEMAARLGIVTGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIA 80 (358)
T ss_pred CcchHHhHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCChhHHHHHHHHHHHHHHHhhcCcchhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhHhhhCCCccccccc
Q 000759 118 HGLNLLMGVELSTCVFLAAADAILFPFFAGQLFIDELIMLNFQENYKAKLLWICTAGIILLSYVLGVLISQPEIPLSVNG 197 (1299)
Q Consensus 118 IALNLLFGIPL~iGVLITavdt~lLL~lgs~~~~d~~~~~~y~G~RKlE~l~~~LI~IM~L~FVv~afis~Pd~geVl~G 197 (1299)
+|+++++|+|.+++++++++++++++++.+ .++|++|+++.+++++|.+||++++++++|||+++++|
T Consensus 81 ~al~ll~g~~~~~~~~~~~~~~~~ll~~~~------------~~y~~~E~~~~~lv~~m~l~f~~~~~~~~p~~~~~~~g 148 (358)
T PF01566_consen 81 IALNLLFGIPLWIWVLLVAVIAILLLWLSS------------GGYRRLERILKVLVAVMVLAFLIAAFIVHPDWGEVARG 148 (358)
T ss_pred HHHHhhcCCCcHHHHHHHHHHHHHHHHHHh------------ccchHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHhhh
Confidence 999999999999999999999999988332 23478999999999999999999999999999999999
Q ss_pred cc-cccCC-ChHHHHHHHhcccchhHHHHHhHHhhhhccccccc-----cchhchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 000759 198 ML-TKFSG-DSAFSIMSLLGASMMPHNFYLHSSIVRRHQGQVNI-----SKGALCHDHFFAILCIFSGIYMVNYVLMNSA 270 (1299)
Q Consensus 198 Lv-P~lpg-~sl~~aVALLGATIMPhNlYLHSaLVqsR~~~~~~-----~k~al~~D~~~~i~~i~lgsfLINlaImiva 270 (1299)
++ |++|. ++++.++|++|||+||||+|+||+++++|+.+.+. ..+..+.|..+++ ++++++|+++++++
T Consensus 149 ~~~P~~p~~~~~~~~valiGttv~p~~lf~~s~~~~~k~~~~~~~~~~~~l~~~~~D~~~g~----~~~~li~~ai~i~~ 224 (358)
T PF01566_consen 149 LVVPSIPGPGSLLFAVALIGTTVMPHNLFLHSSLVQEKGWTGNRSRPDEALKYARFDTIIGM----IVSFLINVAILIVA 224 (358)
T ss_pred ccCCCCcchhHHHHHHHHHHHhhhHHHHHHHHHHhhhcccCCCcchhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 98 99998 88999999999999999999999999998865411 1344566777665 35689999999999
Q ss_pred hhccccCCcccccHHHHHHHHHHhhhhcccccCcccccccccchhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHh
Q 000759 271 ANLFYSTGLVLLTFQDAMSLMEQLFAYSFCSNNNYHLLHTHPMISIRIVEMQVFRSPVVPFAFVLVLFFSNQIIAVNWNL 350 (1299)
Q Consensus 271 AavLygtGi~V~T~~DAa~aLepL~ag~fc~~~~~~ll~~~~l~a~glv~a~~LgG~~A~~IFAIGLLAAGqSSTITgT~ 350 (1299)
|.++|+.+..+.+.+|++++|+| .+|++|+.++|++|+|+|+|+|+++.++
T Consensus 225 A~~l~~~~~~~~~~~~~~~~L~~-----------------------------~~G~~~a~~lF~igl~~a~fss~i~~~~ 275 (358)
T PF01566_consen 225 AAVLYPGGSEVETAAQAAQALEP-----------------------------LLGSPWARYLFAIGLFAAGFSSSITATL 275 (358)
T ss_pred HHHhcccccchhhHHHHHHHHHH-----------------------------hcCchHHHHhHHHHHHHHHHhhHHHhcc
Confidence 99999777778899999999999 5633799999999999999999999999
Q ss_pred hHHHHHhhhhCCCcCcchHHHHHHHHHHHHHHHHHHHhCchh-HHHHHHHHHHHHHHHHhHHHHHHHHHHhccccccCCC
Q 000759 351 SGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSGAEG-VYQLLIFTQVMVAIMLPSSVIPLFRVASSRQIMGVHK 429 (1299)
Q Consensus 351 AGQ~VmeGFLgl~~~~w~rrLitRlIAIIPALiVal~~G~~~-~~qLLi~aQVI~SL~LPFaLIPLL~ftNsr~IMGefr 429 (1299)
+++++++++++++.+.+.|+.+++...++|+++++++.+... |+++++++||+++++||++++|+++++|||++||+||
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~v~~~~~lP~~~~~l~~l~n~~~~mG~~~ 355 (358)
T PF01566_consen 276 AGAYVLADFLGWRWSLSRRRLITRAIAFIPALIIALLIGAPGAPVQLLIFAQVLNSLLLPFVAIPLLLLANDKKLMGEYR 355 (358)
T ss_pred ccceehHhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhhhCcc
Confidence 999999999999999888888888999999998877666543 5899999999999999999999999999999999999
Q ss_pred chH
Q 000759 430 ISQ 432 (1299)
Q Consensus 430 Ns~ 432 (1299)
|+|
T Consensus 356 n~~ 358 (358)
T PF01566_consen 356 NSW 358 (358)
T ss_pred cCC
Confidence 986
No 6
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.85 E-value=3.8e-06 Score=97.66 Aligned_cols=120 Identities=14% Similarity=0.146 Sum_probs=86.3
Q ss_pred HHhhhhhcccCChHHHHHHhHHhhhhHHHHHHHHHHH----HHHHHHHHhhhhheecCCcHHHHHHhhcCc-chhhHHHH
Q 000759 25 VLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNF----AAIFCQYLSARIAVVTGKDLAQICGEEYDK-WTCVFIGV 99 (1299)
Q Consensus 25 GfLmSIAyIDPGNIaTdlqAGA~fGY~LLWVLLLAtI----l~~llQeLAARLGVVTGK~LAEicRe~Ypk-~~~~~LwI 99 (1299)
|+-+.+.+++.+........+-.+|+..+|..+...+ +++++...--|.+ ..++.|.++++|++ ..+.+..+
T Consensus 11 ~~s~~at~~s~~t~ig~~~~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~T~~e~l~~Ryg~~~~~~~~~~ 87 (407)
T TIGR00813 11 AASLFASYISASQFLGLPGAIYAYGFAIGFYELGALVLLIILGWLFVPIFINNG---AYTMPEYLEKRFGKRILRGLSVL 87 (407)
T ss_pred HHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CCchhHHHHHHhCchHHHHHHHH
Confidence 3445566888888888888888999887775554332 2333333333545 56789999999998 45554444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhhcC
Q 000759 100 QTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAG 147 (1299)
Q Consensus 100 ~aeLAIIasDIaEVIGtAIALNLLFGIPL~iGVLITavdt~lLL~lgs 147 (1299)
+..+..+..-..++.|.+..++.++|+|.+.++++.++.+++...++.
T Consensus 88 ~~i~~~~~~~~~q~~g~~~il~~~~gi~~~~~~ii~~~i~~~Yt~~GG 135 (407)
T TIGR00813 88 SLILYIFLYMSVDLFSGALLIELITGLDLYLSLLLLGAITILYTVFGG 135 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHcc
Confidence 445555566667888999999999999999999998888777777664
No 7
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.83 E-value=3.5e-05 Score=91.53 Aligned_cols=118 Identities=13% Similarity=0.206 Sum_probs=80.1
Q ss_pred hhhhhcccCChHHHHHHhHHhhhhHHHHHHHHHHHHHHH--------HHHHhhhhheecCCcHHHHHHhhcCcc-hhhHH
Q 000759 27 LISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIF--------CQYLSARIAVVTGKDLAQICGEEYDKW-TCVFI 97 (1299)
Q Consensus 27 LmSIAyIDPGNIaTdlqAGA~fGY~LLWVLLLAtIl~~l--------lQeLAARLGVVTGK~LAEicRe~Ypk~-~~~~L 97 (1299)
-+.+++++.+.+......+.++|+...|......+++++ +....-|.+. .++.|.++++|++. .+++.
T Consensus 50 s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~T~~e~l~~Ryg~~~~~~~~ 126 (471)
T TIGR02119 50 TLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKYNA---ITINDVLKARYNNKFLVWLS 126 (471)
T ss_pred HHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---ccHHHHHHHHcCCCchHHHH
Confidence 344567888888888888888887643332222222222 2223334443 67999999999954 45555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhhcC
Q 000759 98 GVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAG 147 (1299)
Q Consensus 98 wI~aeLAIIasDIaEVIGtAIALNLLFGIPL~iGVLITavdt~lLL~lgs 147 (1299)
.+...+..+.....++.|.+..++.++|+|.+.++++.++.+++...++.
T Consensus 127 ~i~~i~~~~~~~~~ql~g~g~~l~~~~gi~~~~~iii~~~iv~iYt~~GG 176 (471)
T TIGR02119 127 SISLLVFFFSAMVAQFIGGARLIESLTGLSYLTALFIFSSSVLIYTTFGG 176 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhh
Confidence 55555556666667888999999999999999999988877777766654
No 8
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.75 E-value=2.4e-06 Score=98.92 Aligned_cols=120 Identities=11% Similarity=0.242 Sum_probs=88.5
Q ss_pred hhhhcccCChHHHHHHhHHhhhhHHHHHHHHHHHHHHHH-HHHhhhhheecCCcHHHHHHhhcCcch--hhHHHHHHHHH
Q 000759 28 ISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFC-QYLSARIAVVTGKDLAQICGEEYDKWT--CVFIGVQTELS 104 (1299)
Q Consensus 28 mSIAyIDPGNIaTdlqAGA~fGY~LLWVLLLAtIl~~ll-QeLAARLGVVTGK~LAEicRe~Ypk~~--~~~LwI~aeLA 104 (1299)
+.++.+..+.+....+.+.++|+.-+|..+...+..+++ -.++.|+=-....+++|.++++|++.. +++.++...+.
T Consensus 17 ~~at~~s~~t~~G~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~T~~e~~~~Ryg~~~~~~~~~~i~~i~~ 96 (406)
T PF00474_consen 17 LVATWISAWTFIGFPGFAYSYGISGLWYAIGYAIGFLLFALFFAPRLRRSGAVTIPEYLEKRYGSKALLRILAAIIIIVF 96 (406)
T ss_dssp HHHHHSSHHHHTHHHHHHHHT-GGGGHHHHHHHHHHHHHHHHTHHHHHHTT--SHHHHHHHHT-HHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCcceeeeccccchhHHHHHHHHHHhhcccchhhhhhhhhhhcCCchhhhhhcccccchh
Confidence 445678889999999999999999998887766665544 446777777778889999999999977 55555555555
Q ss_pred HHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhhcC
Q 000759 105 VILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAG 147 (1299)
Q Consensus 105 IIasDIaEVIGtAIALNLLFGIPL~iGVLITavdt~lLL~lgs 147 (1299)
.+..-..++.|.+..++.++|+|.+.+++++++.+++..+++.
T Consensus 97 ~~~~~~~q~~~~~~~~~~~~gi~~~~~~~i~~~i~~iYt~~GG 139 (406)
T PF00474_consen 97 MIPYLAAQLVGGGALLSVLFGIPYNTAILIVGVIVIIYTFFGG 139 (406)
T ss_dssp HHTHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHTTCTT-
T ss_pred hhhhhhccccccccchhhccchhhhHHHHHHHHHHHHhhhhhh
Confidence 6666667888999999999999999999988777766665554
No 9
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.70 E-value=0.0003 Score=84.22 Aligned_cols=115 Identities=13% Similarity=0.162 Sum_probs=77.0
Q ss_pred hhcccCChHHHHHHhHHhhhhHHHHHHHHHHH--------HHHHHHHHhhhhheecCCcHHHHHHhhcCcch-hhHHHHH
Q 000759 30 IGYVDPGKWAVIIEGGAHFGFDLVALMLVFNF--------AAIFCQYLSARIAVVTGKDLAQICGEEYDKWT-CVFIGVQ 100 (1299)
Q Consensus 30 IAyIDPGNIaTdlqAGA~fGY~LLWVLLLAtI--------l~~llQeLAARLGVVTGK~LAEicRe~Ypk~~-~~~LwI~ 100 (1299)
+.+++.+......+...++|+...|..+...+ ++..+..+.-|.+. .+..|.++++|++.. +++..+.
T Consensus 54 at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~---~T~~e~l~~Ryg~~~~~~~~~i~ 130 (483)
T PRK09442 54 ATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKYNA---VTLNDMLRARYQSRLLVWLASLS 130 (483)
T ss_pred HHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---ccHHHHHHHHhCChHHHHHHHHH
Confidence 45677777777777777777775554332222 22223333445544 678999999999654 4444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhhcC
Q 000759 101 TELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAG 147 (1299)
Q Consensus 101 aeLAIIasDIaEVIGtAIALNLLFGIPL~iGVLITavdt~lLL~lgs 147 (1299)
..+..+..-..++.|.+..++.++|+|.+.+++++++.+++...++.
T Consensus 131 ~~~~~~~~~~~ql~~~g~~l~~~~gi~~~~~iii~~~iv~iYt~~GG 177 (483)
T PRK09442 131 LLVFFFAAMTAQFIGGARLLETATGISYETGLLIFGITVALYTAFGG 177 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcc
Confidence 44445555567788999999999999999999988887777766654
No 10
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=98.70 E-value=8.5e-05 Score=89.41 Aligned_cols=120 Identities=13% Similarity=0.125 Sum_probs=82.2
Q ss_pred hhhhcccCChHHHHHHhHHhhhhHHHHHHHHHHHHHH-HHHHHhhhhheec-----CCcHHHHHHhhcCcc---hhhHHH
Q 000759 28 ISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAI-FCQYLSARIAVVT-----GKDLAQICGEEYDKW---TCVFIG 98 (1299)
Q Consensus 28 mSIAyIDPGNIaTdlqAGA~fGY~LLWVLLLAtIl~~-llQeLAARLGVVT-----GK~LAEicRe~Ypk~---~~~~Lw 98 (1299)
+.+.++....+......+.++|+..+|..+...+..+ ....++.|+-+-+ -.++.|.+++||++. .+.+..
T Consensus 51 ~~At~~Sa~t~iG~~g~~y~~G~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~~Ry~~~~~~~~~~~~ 130 (502)
T PRK15419 51 AGASDMSGWLLMGLPGAVFLSGISESWIAIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTGRFEDKSRILRIISA 130 (502)
T ss_pred HHHHHHHHHHHHHhhHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHHHHhCCCchhHHHHHH
Confidence 3445788888888888888999988786654333222 2334455554322 247899999999964 333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhhcC
Q 000759 99 VQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAG 147 (1299)
Q Consensus 99 I~aeLAIIasDIaEVIGtAIALNLLFGIPL~iGVLITavdt~lLL~lgs 147 (1299)
+...+..+.....++.|.+..++.++|+|.+.+++++++.+++..+++.
T Consensus 131 i~~~~~~~~~~~~ql~~~~~~l~~~~gi~~~~~iii~~~iv~iYt~~GG 179 (502)
T PRK15419 131 LVILLFFTIYCASGIVAGARLFESTFGMSYETALWAGAAATILYTFIGG 179 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhh
Confidence 4444444444456677889999999999999999998888887777765
No 11
>PRK12488 acetate permease; Provisional
Probab=98.70 E-value=8.9e-05 Score=90.39 Aligned_cols=122 Identities=16% Similarity=0.157 Sum_probs=90.7
Q ss_pred HHhhhhhcccCChHHHHHHhHHhhhhHHHHHHHHHHHHHHHH--HHHhhhhheecCCcHHHHHHhhcC-cchhhHHHHHH
Q 000759 25 VLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFC--QYLSARIAVVTGKDLAQICGEEYD-KWTCVFIGVQT 101 (1299)
Q Consensus 25 GfLmSIAyIDPGNIaTdlqAGA~fGY~LLWVLLLAtIl~~ll--QeLAARLGVVTGK~LAEicRe~Yp-k~~~~~LwI~a 101 (1299)
|+.+++.++..+........+..+|+.-+|..+- ..+++++ ..++.|+=-..-.++.|.+.++|+ |..+++..+..
T Consensus 75 ~~si~at~~Sa~sflG~~G~~y~~G~~~~~~~~g-~~~g~~~~~~~~a~~lr~~g~~T~~d~l~~Rf~s~~~r~laai~~ 153 (549)
T PRK12488 75 GLAIAGDMISAASFLGISAMMFMNGYDGLLYALG-VLAGWPIILFLIAERLRNLGKYTFADVVSYRLAQGPVRLTAAFGT 153 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHH-HHHHHHHHHHHHHHHHHHCCCcchHHHHHHHcCCCcchHHHHHHH
Confidence 5556667888888888888888999988776543 3333322 234444332233689999999998 56777776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhhcC
Q 000759 102 ELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAG 147 (1299)
Q Consensus 102 eLAIIasDIaEVIGtAIALNLLFGIPL~iGVLITavdt~lLL~lgs 147 (1299)
.+..+..-..++.|.+..++.++|+|.+.+++++++.+++..+++.
T Consensus 154 i~~~~~yl~~q~~g~g~il~~l~gi~~~~~iii~~~i~~~Yt~~GG 199 (549)
T PRK12488 154 LTVVLMYLVAQMVGAGKLIELLFGISYLYAVVIVGALMVLYVTFGG 199 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccc
Confidence 6666777778899999999999999999999999888888777765
No 12
>PRK09395 actP acetate permease; Provisional
Probab=98.64 E-value=0.00014 Score=88.55 Aligned_cols=122 Identities=16% Similarity=0.206 Sum_probs=89.7
Q ss_pred HHhhhhhcccCChHHHHHHhHHhhhhHHHHHHHHHHHHHHH--HHHHhhhhheecCCcHHHHHHhhcC-cchhhHHHHHH
Q 000759 25 VLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIF--CQYLSARIAVVTGKDLAQICGEEYD-KWTCVFIGVQT 101 (1299)
Q Consensus 25 GfLmSIAyIDPGNIaTdlqAGA~fGY~LLWVLLLAtIl~~l--lQeLAARLGVVTGK~LAEicRe~Yp-k~~~~~LwI~a 101 (1299)
|+-+.+.++..+.+......+..+|+.-+|..+-. .++++ .-.++.|+=-..-.+..|.+++||+ |..+++..+..
T Consensus 77 ~~si~At~~Sa~tfiG~~g~~y~~G~~~~~~~~~~-~~g~~~~~~~~~~~~r~~g~~T~~d~l~~Rygs~~~r~l~av~~ 155 (551)
T PRK09395 77 GLAIAGDYMSAASFLGISALVFTSGYDGLIYSIGF-LVGWPIILFLIAERLRNLGKYTFADVASYRLKQGPIRTLSACGS 155 (551)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhCHHHHHHHHHH-HHHHHHHHHHHHHHHhhCCCccHHHHHHHHcCCchHHHHHHHHH
Confidence 45566677888888888888888998877655432 22221 1223454444444789999999999 45777766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhhcC
Q 000759 102 ELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAG 147 (1299)
Q Consensus 102 eLAIIasDIaEVIGtAIALNLLFGIPL~iGVLITavdt~lLL~lgs 147 (1299)
.+..+..-..++.|.+..++.++|+|.+.+++++++.+++...++.
T Consensus 156 iv~~~~yl~~q~~g~g~il~~~~gi~~~~~ili~~~i~~iYt~~GG 201 (551)
T PRK09395 156 LVVVALYLIAQMVGAGKLIQLLFGLNYHVAVVLVGVLMMVYVLFGG 201 (551)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcc
Confidence 6666677778888999999999999999999999988888877765
No 13
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=98.64 E-value=0.00027 Score=86.24 Aligned_cols=122 Identities=16% Similarity=0.199 Sum_probs=87.4
Q ss_pred HHhhhhhcccCChHHHHHHhHHhhhhHHHHHHHHHHHHHHH--HHHHhhhhheecCCcHHHHHHhhcC-cchhhHHHHHH
Q 000759 25 VLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIF--CQYLSARIAVVTGKDLAQICGEEYD-KWTCVFIGVQT 101 (1299)
Q Consensus 25 GfLmSIAyIDPGNIaTdlqAGA~fGY~LLWVLLLAtIl~~l--lQeLAARLGVVTGK~LAEicRe~Yp-k~~~~~LwI~a 101 (1299)
|+-++..+++..........+..+|+.-+|..+ ..+++++ +-.++.|+--..-.++.|.+.+||+ |..+++..+..
T Consensus 75 g~si~at~~SaasflG~~G~~y~~G~~~~~~~~-g~~~~~~i~~~~~a~~lrr~g~~T~~d~l~~Rf~s~~~r~l~ai~~ 153 (549)
T TIGR02711 75 GLAIAGDYMSAASFLGISALVYTSGYDGLIYSL-GFLVGWPIILFLIAERLRNLGRYTFADVASYRLKQRPIRILSACGS 153 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHcCCcchhHHHHHHH
Confidence 444556678888888888888899998877553 2333321 1223444433334789999999997 55676665555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhhcC
Q 000759 102 ELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAG 147 (1299)
Q Consensus 102 eLAIIasDIaEVIGtAIALNLLFGIPL~iGVLITavdt~lLL~lgs 147 (1299)
.+..+..-..++.|.+..++.++|+|.+.+++++++.+++...++.
T Consensus 154 i~~~~~yl~~ql~g~g~il~~~~gi~~~~~iii~~~i~~~Yt~~GG 199 (549)
T TIGR02711 154 LVVVALYLIAQMVGAGKLIELLFGLNYHVAVVLVGILMVMYVLFGG 199 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhh
Confidence 5555666667888999999999999999999999888888777765
No 14
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=98.61 E-value=0.00049 Score=82.63 Aligned_cols=119 Identities=10% Similarity=0.166 Sum_probs=75.2
Q ss_pred hhhcccCChHHHHHHhHHhhhhHHHHHHHHHHHHHHH-HHHHhhhhheec-----CCcHHHHHHhhcCcch---hhHHHH
Q 000759 29 SIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIF-CQYLSARIAVVT-----GKDLAQICGEEYDKWT---CVFIGV 99 (1299)
Q Consensus 29 SIAyIDPGNIaTdlqAGA~fGY~LLWVLLLAtIl~~l-lQeLAARLGVVT-----GK~LAEicRe~Ypk~~---~~~LwI 99 (1299)
+++++....+......+..+|+.-+|..+-..+..++ .-.++.|+-..+ -.++.|.+++||++.. +.+..+
T Consensus 48 ~At~~s~~~~~G~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~Ryg~~~~~~~~~~ai 127 (487)
T TIGR02121 48 GASDMSGWLLMGLPGALYVTGLSELWIAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFENRFNDKSRLLRIISAL 127 (487)
T ss_pred HHHHHhHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHHHhCCCCchhHHHHHH
Confidence 3445555566666666777887777775432222222 122344433222 2459999999999543 333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhhcC
Q 000759 100 QTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAG 147 (1299)
Q Consensus 100 ~aeLAIIasDIaEVIGtAIALNLLFGIPL~iGVLITavdt~lLL~lgs 147 (1299)
+..+..+..-..++.|.+..++.++|+|.+.+++++++.+++...++.
T Consensus 128 ~~~~~~~~~~~~~l~~~~~~l~~~~gi~~~~~iii~~~i~~~Yt~~GG 175 (487)
T TIGR02121 128 IILVFFTIYTSSGLVAGGKLFESTFGLDYKTGLLIGALIIVIYTFFGG 175 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHhhh
Confidence 344444444556677888889989999999999998888877777664
No 15
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=98.61 E-value=0.00017 Score=84.73 Aligned_cols=158 Identities=16% Similarity=0.108 Sum_probs=95.7
Q ss_pred hhhhhHHhhhhhcccCChHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHhhhhheec--CCcHHHHHHhhcCcchhhHH
Q 000759 20 PAVLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVT--GKDLAQICGEEYDKWTCVFI 97 (1299)
Q Consensus 20 a~LGPGfLmSIAyIDPGNIaTdlqAGA~fGY~LLWVLLLAtIl~~llQeLAARLGVVT--GK~LAEicRe~Ypk~~~~~L 97 (1299)
+.+|=.+++....+|+|=+.-=.++|...=.-.+++++++-++++.-+.+-+++-.-+ |.++.+.+++++||.++++.
T Consensus 4 ~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g~~~~ 83 (394)
T PF03222_consen 4 SILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKGGIVI 83 (394)
T ss_pred hHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHHHHH
Confidence 4567778888888999998887775544434455555556666677777777776655 88899999999999998877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh------hCChhHHHHHHHHHHHHHHHhhcCcchhhHHHHhhhhhhHHHHHHHHH
Q 000759 98 GVQTELSVILLDLTMVLGIAHGLNLL------MGVELSTCVFLAAADAILFPFFAGQLFIDELIMLNFQENYKAKLLWIC 171 (1299)
Q Consensus 98 wI~aeLAIIasDIaEVIGtAIALNLL------FGIPL~iGVLITavdt~lLL~lgs~~~~d~~~~~~y~G~RKlE~l~~~ 171 (1299)
|+...+...+.-.+=+.|.+--+.-+ .++|.+.+.++..+....+++++. +.+.++...
T Consensus 84 ~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~~~~~~~~~~f~~i~~~iv~~g~---------------~~v~~~n~~ 148 (394)
T PF03222_consen 84 GISYLFLLYALLVAYISGGGSILSSLLGNQLGTDLSPWLSSLLFTIIFGGIVYFGT---------------KAVDRINRV 148 (394)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhH---------------HHHHHHHHH
Confidence 76544433333333222332222222 245666666555444444444432 234444444
Q ss_pred HHHHHHHHHHHhHhhhCCCcc
Q 000759 172 TAGIILLSYVLGVLISQPEIP 192 (1299)
Q Consensus 172 LI~IM~L~FVv~afis~Pd~g 192 (1299)
++..|.++|+...+..-|.|.
T Consensus 149 lv~~~i~~~~~l~~~~~p~~~ 169 (394)
T PF03222_consen 149 LVFGMIISFIILVVYLIPHWN 169 (394)
T ss_pred HHHHHHHHHHHHHHHHhhhcC
Confidence 555666666655555556654
No 16
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=98.44 E-value=0.0023 Score=78.29 Aligned_cols=120 Identities=12% Similarity=0.208 Sum_probs=86.6
Q ss_pred HHhhhhhcccCChHHHHHHhHHhhhhHHHHHHHH----HHHHHHHHHHHhhhhheecCCcHHHHHHhhcCc-chhhHHHH
Q 000759 25 VLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLV----FNFAAIFCQYLSARIAVVTGKDLAQICGEEYDK-WTCVFIGV 99 (1299)
Q Consensus 25 GfLmSIAyIDPGNIaTdlqAGA~fGY~LLWVLLL----AtIl~~llQeLAARLGVVTGK~LAEicRe~Ypk-~~~~~LwI 99 (1299)
|+-+.+.++...........+..+||..+|..+- ..++++++-..--|+|+ .++.|.+.+||++ ..+++..+
T Consensus 40 ~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~p~~rr~~~---~T~~e~l~~Rf~s~~~~~~~~i 116 (552)
T TIGR03648 40 GMATAADWMSAASFISMAGLIAFLGYDGLAYLMGWTGGYVLLALLLAPYLRKFGK---YTVPDFIGDRYYSNTARLVAVI 116 (552)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---ccHHHHHHHHhCCCceehhHHH
Confidence 3445556677777777777888888887666532 22344555555567776 4789999999984 45666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhhcC
Q 000759 100 QTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAG 147 (1299)
Q Consensus 100 ~aeLAIIasDIaEVIGtAIALNLLFGIPL~iGVLITavdt~lLL~lgs 147 (1299)
...+..+..-..++.|.+..++.++|+|.+.++++.++.+++...++.
T Consensus 117 ~~~~~~~~~l~~ql~~~~~~l~~~~gi~~~~~iii~~~i~~iYt~~GG 164 (552)
T TIGR03648 117 CAIFISFTYVAGQMRGVGVVFSRFLEVDFETGVFIGMAIVFFYAVLGG 164 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhh
Confidence 555566666667778999999999999999999998887777776664
No 17
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.42 E-value=0.00088 Score=80.13 Aligned_cols=328 Identities=12% Similarity=0.045 Sum_probs=170.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhheecCCcHHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHH
Q 000759 51 DLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMGVELST 130 (1299)
Q Consensus 51 ~LLWVLLLAtIl~~llQeLAARLGVVTGK~LAEicRe~Ypk~~~~~LwI~aeLAIIasDIaEVIGtAIALNLLFGIPL~i 130 (1299)
+-++.+++.++++.++--..+=.|..||..=...-|..+|.+.+++.-++..+..++.-.-+++=.+.+.+...++|.++
T Consensus 53 ~si~aillG~llG~i~~A~~s~~Ga~~Glpqmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~~~~~~~~ 132 (442)
T COG1457 53 QSLLAILLGNLLGGIFMAYFSYQGARTGLPQMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSGTGLPVWA 132 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCChheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccCCCCcHHH
Confidence 45788899999999999999999999999999999999999888776666666777765555544444333346889999
Q ss_pred HHHHHHHHHHHHHhhcCcchhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhH-hhhCC-CccccccccccccCCChHH
Q 000759 131 CVFLAAADAILFPFFAGQLFIDELIMLNFQENYKAKLLWICTAGIILLSYVLGV-LISQP-EIPLSVNGMLTKFSGDSAF 208 (1299)
Q Consensus 131 GVLITavdt~lLL~lgs~~~~d~~~~~~y~G~RKlE~l~~~LI~IM~L~FVv~a-fis~P-d~geVl~GLvP~lpg~sl~ 208 (1299)
++++.++.+++..+++ |.-.+++|++... ++.+.|++.. ...++ +.......-.|..+ .++.
T Consensus 133 ~ili~g~l~~l~~ifG------------~r~l~~l~~~a~~---~~~~lf~~l~~~~~~~~~~~~~~~~~~~~~~-~~fl 196 (442)
T COG1457 133 GILIIGVLMTLVTIFG------------YRALHKLERIAVP---LLLLLFLYLLALLFRSKGGLDALWVKGPTSP-LSFL 196 (442)
T ss_pred HHHHHHHHHHHHHHHh------------HHHHHHHHHHHHH---HHHHHHHHHHHHHHhcccccceeeccCCCcc-hhHH
Confidence 9999988888777665 3334556666543 3344443322 22332 22222211113222 2333
Q ss_pred HHHHHhcccchhHHHHHhHHhhhhccccccccchhchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccccHHHHH
Q 000759 209 SIMSLLGASMMPHNFYLHSSIVRRHQGQVNISKGALCHDHFFAILCIFSGIYMVNYVLMNSAANLFYSTGLVLLTFQDAM 288 (1299)
Q Consensus 209 ~aVALLGATIMPhNlYLHSaLVqsR~~~~~~~k~al~~D~~~~i~~i~lgsfLINlaImivaAavLygtGi~V~T~~DAa 288 (1299)
.+++++=+..+-+..|. +... |-.+++ +. +|.++. .+++.++-+.++++++|..--..|.. + -+.
T Consensus 197 ~a~slv~g~~~sw~~~~-aDys--Ry~~~~---t~--~~~~~~---~~~G~~l~~~~~~ilGa~~a~a~g~~--~--~~~ 261 (442)
T COG1457 197 SALSLVIGSFASWGPYA-ADYS--RYAPSP---TP--SKAFLA---AVLGFFLGTSFMMILGAALAAAAGNA--D--SIA 261 (442)
T ss_pred HHHHHHHHHHHhhhhhh-hhhh--hhcCCC---ch--HHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCC--c--hHH
Confidence 33333222233332221 1111 111111 11 233332 23456677778888877652222211 1 011
Q ss_pred HHHHHhhhhcccccCcccccccccchhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhCCCcCcch
Q 000759 289 SLMEQLFAYSFCSNNNYHLLHTHPMISIRIVEMQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLDIPGWL 368 (1299)
Q Consensus 289 ~aLepL~ag~fc~~~~~~ll~~~~l~a~glv~a~~LgG~~A~~IFAIGLLAAGqSSTITgT~AGQ~VmeGFLgl~~~~w~ 368 (1299)
..+ . .+| .++ ..-.+++..+..++.....|++..-+..... +.++..
T Consensus 262 ~~~-~-----------------------------~~G-~~g-~~~~lil~l~~~ttN~~nlYsa~ls~~~i~~-~l~k~~ 308 (442)
T COG1457 262 DVM-L-----------------------------GLG-GFG-LPAILILVLGTVTTNANNLYSAGLSFANIIP-KLSKVT 308 (442)
T ss_pred HHH-H-----------------------------hcc-cHH-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhhh-hhhhHH
Confidence 100 0 232 222 2223455555566666677777555544433 133333
Q ss_pred HHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHhHHHHHHH-HHHhccc-----cccCCCchHHHHHHHHHHH
Q 000759 369 HHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLF-RVASSRQ-----IMGVHKISQYHEFLVLITF 442 (1299)
Q Consensus 369 rrLitRlIAIIPALiVal~~G~~~~~qLLi~aQVI~SL~LPFaLIPLL-~ftNsr~-----IMGefrNs~~~nILawli~ 442 (1299)
+..++.+ . +.+++.+++... ...+..|...+...+-|...|-+- +|..+|. +...++.-.+.-..+|++.
T Consensus 309 ~~v~~~v-~-igt~la~~~~~f--~~~f~~Fl~~i~~~i~P~~~I~iad~~~~rr~~~~~~~~~~~~~~~~~g~~aw~~~ 384 (442)
T COG1457 309 RVVIAGV-G-IGTLLALAGPFF--YNFFENFLLLLGYFIPPWGGVMIADYFIVRRRYSAYNIDDWEKGENLPGGVAWIAG 384 (442)
T ss_pred HHHHHHH-H-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchHHHHHH
Confidence 3333322 1 333332222111 345566777777888888877665 4444433 3333322233445556555
Q ss_pred HHHH
Q 000759 443 MGML 446 (1299)
Q Consensus 443 llIi 446 (1299)
+++-
T Consensus 385 ~iv~ 388 (442)
T COG1457 385 LIVG 388 (442)
T ss_pred HHHH
Confidence 5444
No 18
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.35 E-value=0.0034 Score=76.07 Aligned_cols=126 Identities=15% Similarity=0.262 Sum_probs=88.2
Q ss_pred hhhHHh-hhhhcccCChHHHHHHhHHhh--hhHHHHHHHHHHHHHH-HHHHHhhhhheec----CCcHHHHHHhhcC-cc
Q 000759 22 VLPVLL-ISIGYVDPGKWAVIIEGGAHF--GFDLVALMLVFNFAAI-FCQYLSARIAVVT----GKDLAQICGEEYD-KW 92 (1299)
Q Consensus 22 LGPGfL-mSIAyIDPGNIaTdlqAGA~f--GY~LLWVLLLAtIl~~-llQeLAARLGVVT----GK~LAEicRe~Yp-k~ 92 (1299)
+||+.. ++++..+-+.|+---..|..| |+.-+|..+..++..+ ..-.++.|+=..+ -.++.|.+++||+ +.
T Consensus 40 lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~T~~d~l~~Rf~s~~ 119 (493)
T COG0591 40 LGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAKARGATTIPDFLEARFGSKI 119 (493)
T ss_pred CChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccHHHHHHHHcCChH
Confidence 555522 334445555555555556655 8888998877643333 3344556665556 5679999999999 77
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhhcC
Q 000759 93 TCVFIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAG 147 (1299)
Q Consensus 93 ~~~~LwI~aeLAIIasDIaEVIGtAIALNLLFGIPL~iGVLITavdt~lLL~lgs 147 (1299)
.+.+..+...+..+..-..++.|.+..++.++|++.+.+.++.++.+.+..+++.
T Consensus 120 lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~gi~~~~~~~~~~~~v~~Yt~~gG 174 (493)
T COG0591 120 LRILSALIIIVFFIPYIALQLVAGGLLLSLLFGISYVTGILIGALIVALYTFLGG 174 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 7777666666666666667788999889999999999988887777777777665
No 19
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=98.33 E-value=0.0012 Score=78.34 Aligned_cols=157 Identities=9% Similarity=0.014 Sum_probs=88.0
Q ss_pred hhhhhHHhhhhhcccCChHHHHHHhHHhhhhHHHHHHHHHHH-HHHHHHHHhhhhhe--ecCCcHHHHHHhhcCcchhhH
Q 000759 20 PAVLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNF-AAIFCQYLSARIAV--VTGKDLAQICGEEYDKWTCVF 96 (1299)
Q Consensus 20 a~LGPGfLmSIAyIDPGNIaTdlqAGA~fGY~LLWVLLLAtI-l~~llQeLAARLGV--VTGK~LAEicRe~Ypk~~~~~ 96 (1299)
+.+|=.+++....+|+|=+.==.++|...=+-.+-+++++-+ |.+.-.. -+|.-. --|.++-.+.++.+||.+.++
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~-l~Ev~~~~~~~~~~~~~a~~~LG~~g~~i 82 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALL-LLEVYQHVPADTGLGTLAKRYLGRYGQWL 82 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCHHHHHHHHhChHHHHH
Confidence 568889999999999999988888777332222222222222 3322222 233222 246789999999999988887
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHh---h--CChhHHHHHHHHHHHHHHHhhcCcchhhHHHHhhhhhhHHHHHHHH
Q 000759 97 IGVQTELSVILLDLTMVLG-IAHGLNLL---M--GVELSTCVFLAAADAILFPFFAGQLFIDELIMLNFQENYKAKLLWI 170 (1299)
Q Consensus 97 LwI~aeLAIIasDIaEVIG-tAIALNLL---F--GIPL~iGVLITavdt~lLL~lgs~~~~d~~~~~~y~G~RKlE~l~~ 170 (1299)
.|+...+...+.-.+=+.| ..+--|.+ + ++|.+.+.++..+...++++.+ .+.+.++..
T Consensus 83 ~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~i~~~~~~l~F~~~~~~iv~~g---------------~~~v~~~n~ 147 (403)
T PRK15132 83 TGFSMMFLMYALTAAYISGAGELLASSISDWTGISMSPTAGVLLFTLVAGGVVCVG---------------TSSVDLFNR 147 (403)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhcc---------------HHHHHHHHH
Confidence 7766544433333322223 11111222 2 3466666665555444455444 233444544
Q ss_pred HHHHHHHHHHHHhHhhhCCCcc
Q 000759 171 CTAGIILLSYVLGVLISQPEIP 192 (1299)
Q Consensus 171 ~LI~IM~L~FVv~afis~Pd~g 192 (1299)
+++..|.++|+...+..-|+|.
T Consensus 148 ~L~~~~ii~~~~~~~~l~p~~~ 169 (403)
T PRK15132 148 FLFSAKIIFLVVMLALMMPHIH 169 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 5555666666655555556665
No 20
>PRK11017 codB cytosine permease; Provisional
Probab=98.24 E-value=0.0086 Score=70.75 Aligned_cols=95 Identities=11% Similarity=0.093 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhheecCCcHHHHHHhhcCcchhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhCChhH
Q 000759 51 DLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSVILL-DLTMVLGIAHGLNLLMGVELS 129 (1299)
Q Consensus 51 ~LLWVLLLAtIl~~llQeLAARLGVVTGK~LAEicRe~Ypk~~~~~LwI~aeLAIIas-DIaEVIGtAIALNLLFGIPL~ 129 (1299)
+-++++++.+++..++--+.++.|..||.+-.-.+|..||.+...+..++..+..++. -++.+++ +.+++-++|++..
T Consensus 43 ~ai~aiilG~~i~~~~~~l~~~~G~k~G~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~-~~~l~~~~~~~~~ 121 (404)
T PRK11017 43 DFLLAVLIGNLLLGIYTAALGYIGAKTGLSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMF-AIPVVKATGLDIN 121 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCcCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHhCCCHH
Confidence 4567788888888999999999999999999999999999876665444333333332 2333332 3445556788776
Q ss_pred HHHHHHHHHHHHHHhhc
Q 000759 130 TCVFLAAADAILFPFFA 146 (1299)
Q Consensus 130 iGVLITavdt~lLL~lg 146 (1299)
.++++..+..+++.+++
T Consensus 122 ~~~~i~~~l~~~~~~~G 138 (404)
T PRK11017 122 LLIVLSGLLMTVTAYFG 138 (404)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666555555555443
No 21
>PRK10484 putative transporter; Provisional
Probab=98.23 E-value=0.014 Score=71.10 Aligned_cols=105 Identities=14% Similarity=0.196 Sum_probs=57.3
Q ss_pred hhhhcccCChHHHHHHhHHhhhhHHHHHHHHHH----HHHHHHHHHhhhhheecCCcHHHHHHhhcCcchhhHHHHHHHH
Q 000759 28 ISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFN----FAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTEL 103 (1299)
Q Consensus 28 mSIAyIDPGNIaTdlqAGA~fGY~LLWVLLLAt----Il~~llQeLAARLGVVTGK~LAEicRe~Ypk~~~~~LwI~aeL 103 (1299)
+.++++..+.+......+..+|+..+|..+... ++++++-.---|.|+ .++.|.++++|++..+.++.++..+
T Consensus 49 l~AT~~Sa~tflG~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~---~T~~e~l~~Ryg~~~~~~~~~~~~i 125 (523)
T PRK10484 49 LLLTNLSTEQLVGLNGQAYASGMSVMAWEVTAAIALIILALIFLPRYLKSGI---TTIPDFLEERYDKTTRRIVSILFLI 125 (523)
T ss_pred HHHHHhhHHHHhcchHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---ccHHHHHHHhcCchhHHHHHHHHHH
Confidence 444568888888888888888877653222222 222222111224444 4689999999998766544333223
Q ss_pred HHHHHHHHH-HHHHHHHHHH------hhCChhHHHHHHH
Q 000759 104 SVILLDLTM-VLGIAHGLNL------LMGVELSTCVFLA 135 (1299)
Q Consensus 104 AIIasDIaE-VIGtAIALNL------LFGIPL~iGVLIT 135 (1299)
..+...++. +.+.+++++- ++|+|...++.++
T Consensus 126 ~~~~~~~~~~l~~g~~~l~~i~~~~~~~gi~~~~~~~~~ 164 (523)
T PRK10484 126 GYVVSFLPIVLYSGALALNSLFHVSELLGISYGAAIWLL 164 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHH
Confidence 322222222 2233444432 4688877766554
No 22
>PRK11375 allantoin permease; Provisional
Probab=98.23 E-value=0.0098 Score=72.05 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhheecCCcHHHHHHhhcCcchhhHHHH
Q 000759 50 FDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGV 99 (1299)
Q Consensus 50 Y~LLWVLLLAtIl~~llQeLAARLGVVTGK~LAEicRe~Ypk~~~~~LwI 99 (1299)
++-++++++++++..++--+.+++|..+|.+..-.+|..||.....+..+
T Consensus 60 ~~ai~ai~lG~~i~~~~~~l~g~~G~~~Gl~~~v~sR~sFG~~Gs~l~~~ 109 (484)
T PRK11375 60 FSIMLAIILSAFFIAAVMVLNGAAGSKYGVPFAMILRASYGVRGALFPGL 109 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccCCChhHhHHHHHccccchHHHH
Confidence 35577888888999999999999999999999999999999776554433
No 23
>PRK10483 tryptophan permease; Provisional
Probab=98.21 E-value=0.0019 Score=77.01 Aligned_cols=148 Identities=14% Similarity=0.133 Sum_probs=85.8
Q ss_pred HhhhhhHHhhhhhcccCChHHHH-HHhHHhhhhHHHHHHHHHHHH---HHHHHHHhhhhheecCCcHHHHHHhhcCcchh
Q 000759 19 VPAVLPVLLISIGYVDPGKWAVI-IEGGAHFGFDLVALMLVFNFA---AIFCQYLSARIAVVTGKDLAQICGEEYDKWTC 94 (1299)
Q Consensus 19 La~LGPGfLmSIAyIDPGNIaTd-lqAGA~fGY~LLWVLLLAtIl---~~llQeLAARLGVVTGK~LAEicRe~Ypk~~~ 94 (1299)
.+.+|=.+|++...+|.|=++-- ..+|+-|.+.++-.++.-.+| ++++-|..-+.. -|.++..+.++..||.+.
T Consensus 11 ~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~--~g~~~~tma~~~LG~~g~ 88 (414)
T PRK10483 11 PSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYR--IGSSFDTITKDLLGKGWN 88 (414)
T ss_pred CcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCHHHHHHHHcChHHH
Confidence 46789999999999999987643 334444544443333322222 334666666654 477899999999999888
Q ss_pred hHHHHHHH---HHHHHHHHHHHHHHHHHHHHh---h--CChhHHHHHHHHHHHHHHHhhcCcchhhHHHHhhhhhhHHHH
Q 000759 95 VFIGVQTE---LSVILLDLTMVLGIAHGLNLL---M--GVELSTCVFLAAADAILFPFFAGQLFIDELIMLNFQENYKAK 166 (1299)
Q Consensus 95 ~~LwI~ae---LAIIasDIaEVIGtAIALNLL---F--GIPL~iGVLITavdt~lLL~lgs~~~~d~~~~~~y~G~RKlE 166 (1299)
++.|+... .+.+.+.+. |.+--++-+ + ++|.+.+.++..+..-.+++.+. +...
T Consensus 89 ~i~~~s~lfl~Y~Ll~AYis---g~g~il~~~l~~~~~~i~~~~~~llF~~~~~~iv~~gt---------------~~vd 150 (414)
T PRK10483 89 VVNGISIAFVLYILTYAYIS---ASGSILHHTFAEMSLNVPARAAGFGFALLVAFVVWLST---------------KAVS 150 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHh---CcHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhh---------------hHHH
Confidence 77665432 233333332 222222222 2 45888888777666666665553 2333
Q ss_pred HHHHHHHHHHHHHHHHhHhh
Q 000759 167 LLWICTAGIILLSYVLGVLI 186 (1299)
Q Consensus 167 ~l~~~LI~IM~L~FVv~afi 186 (1299)
++..++++.|.++|++....
T Consensus 151 ~~n~~l~~~~i~~f~~~~~~ 170 (414)
T PRK10483 151 RMTAIVLGAKVITFFLTFGS 170 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344555666666654443
No 24
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=98.19 E-value=0.0078 Score=72.32 Aligned_cols=150 Identities=13% Similarity=0.061 Sum_probs=95.4
Q ss_pred HhhhhhcccCChHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHhhhhheec---CCcHHHHHHhhcCcchhhHHHHHHH
Q 000759 26 LLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVT---GKDLAQICGEEYDKWTCVFIGVQTE 102 (1299)
Q Consensus 26 fLmSIAyIDPGNIaTdlqAGA~fGY~LLWVLLLAtIl~~llQeLAARLGVVT---GK~LAEicRe~Ypk~~~~~LwI~ae 102 (1299)
+.+....+|+|=+.==+++|...=+-++-+++++-+++++..++-+|.-.-. |.++-+..++++||.+.++.|+...
T Consensus 26 l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~ilYf 105 (443)
T PRK13629 26 LGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFLYF 105 (443)
T ss_pred HHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHHHHH
Confidence 3444457999999999999888777777777777777777766667765544 6899999999999998887766544
Q ss_pred HHHHH---HH---HHHHHHHHHHHHHhhCC---hhHHHHHHHHHHHHHHHhhcCcchhhHHHHhhhhhhHHHHHHHHHHH
Q 000759 103 LSVIL---LD---LTMVLGIAHGLNLLMGV---ELSTCVFLAAADAILFPFFAGQLFIDELIMLNFQENYKAKLLWICTA 173 (1299)
Q Consensus 103 LAIIa---sD---IaEVIGtAIALNLLFGI---PL~iGVLITavdt~lLL~lgs~~~~d~~~~~~y~G~RKlE~l~~~LI 173 (1299)
+++.. .. +++.+..-+. | .+|+ |.++..++.++....+++ .|.+.+.++...|+
T Consensus 106 f~ly~ll~aY~~~itn~l~sfl~-~-ql~~~~~~r~l~slifv~~l~~iv~---------------~G~~~v~kv~~~Lv 168 (443)
T PRK13629 106 FAICPLLWIYGVTITNTFMTFWE-N-QLGFAPLNRGFVALFLLLLMAFVIW---------------FGKDLMVKVMSYLV 168 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-h-hcCcCCccHHHHHHHHHHHHHHHHH---------------hhHHHHHHHHHHHH
Confidence 43322 21 1222211111 1 1233 555555544443334443 34445666666677
Q ss_pred HHHHHHHHHhHhhhCCCcc
Q 000759 174 GIILLSYVLGVLISQPEIP 192 (1299)
Q Consensus 174 ~IM~L~FVv~afis~Pd~g 192 (1299)
..+.++|+...+.--|.|.
T Consensus 169 ~~~i~~l~~l~~~LiP~w~ 187 (443)
T PRK13629 169 WPFIASLVLISLSLIPYWN 187 (443)
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 7777777777666677775
No 25
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=98.17 E-value=0.0016 Score=75.17 Aligned_cols=65 Identities=17% Similarity=0.160 Sum_probs=39.9
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhCCCcCcchHHHHHHHHHHHHHHHHHHHh
Q 000759 323 VFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTS 388 (1299)
Q Consensus 323 ~LgG~~A~~IFAIGLLAAGqSSTITgT~AGQ~VmeGFLgl~~~~w~rrLitRlIAIIPALiVal~~ 388 (1299)
.+++++...+..++.+.|-.+|.+.+.++..-...+.++++.++.. +.....++.+|.++++.+.
T Consensus 262 ~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~~~~-~~~~~~~~~~~pl~~a~~~ 326 (381)
T TIGR00837 262 VLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDSKKG-RFKTGLLTFLPPLVFALFY 326 (381)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC-CchhhhhhHHhHHHHHHHh
Confidence 3556666777777777777778888787765445566665433222 3334455566766666544
No 26
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=98.10 E-value=0.0035 Score=74.24 Aligned_cols=48 Identities=15% Similarity=0.299 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHhhh------hheec-CCcHHHHHHhhcCcchhhHHHHH
Q 000759 53 VALMLVFNFAAIFCQYLSAR------IAVVT-GKDLAQICGEEYDKWTCVFIGVQ 100 (1299)
Q Consensus 53 LWVLLLAtIl~~llQeLAAR------LGVVT-GK~LAEicRe~Ypk~~~~~LwI~ 100 (1299)
.|..+++.++++++-.+.+| +.--. |+++.|..++.+||++..++++.
T Consensus 33 ~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ii~~l 87 (397)
T TIGR00814 33 LWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGILITLL 87 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHHHHHH
Confidence 56666666666666666666 45555 88999999999999888765543
No 27
>PRK10238 aromatic amino acid transporter; Provisional
Probab=98.10 E-value=0.023 Score=67.87 Aligned_cols=131 Identities=7% Similarity=0.054 Sum_probs=67.1
Q ss_pred Ccccccccc-CCchhHHHHHhhhhhHHhhhhh-cccCChHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHhhhhheecC
Q 000759 1 MDAELANSN-YQSGVLYRLVPAVLPVLLISIG-YVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTG 78 (1299)
Q Consensus 1 m~~~~~~~~-~~~~~~rkLLa~LGPGfLmSIA-yIDPGNIaTdlqAGA~fGY~LLWVLLLAtIl~~llQeLAARLGVVTG 78 (1299)
||...+.+. ++.-+.+... .+|=|-.+..+ ++.||......-.++-++|-+ .-++..++++.+-||+.++=. +|
T Consensus 1 ~~~~~~~~~l~r~L~~~~~~-~i~ig~~IGsGif~~~g~~~~~~Gp~~i~~~~i--~gi~~~~v~~s~aEl~s~~P~-aG 76 (456)
T PRK10238 1 MEGQQHGEQLKRGLKNRHIQ-LIALGGAIGTGLFLGSASVIQSAGPGIILGYAI--AGFIAFLIMRQLGEMVVEEPV-AG 76 (456)
T ss_pred CCccccchhhhccCcHHHHH-HHHhhccccchHHHhhHHHHHhcCcHHHHHHHH--HHHHHHHHHHHHHHHHHhcCC-CC
Confidence 565554442 3333333332 34444444443 477777776543334443322 222334444555678877775 44
Q ss_pred CcHHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-ChhHHHHHHHH
Q 000759 79 KDLAQICGEEYDKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMG-VELSTCVFLAA 136 (1299)
Q Consensus 79 K~LAEicRe~Ypk~~~~~LwI~aeLAIIasDIaEVIGtAIALNLLFG-IPL~iGVLITa 136 (1299)
+...-.++.||+...++.....-++.+.....+..+.+.-++..++ .|.|...++..
T Consensus 77 -g~y~~~~~~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~ 134 (456)
T PRK10238 77 -SFSHFAYKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPEIPTWVSAAVFF 134 (456)
T ss_pred -CHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHH
Confidence 6677777889987776543333333333334455454544555553 46665554433
No 28
>PRK11387 S-methylmethionine transporter; Provisional
Probab=98.07 E-value=0.061 Score=64.39 Aligned_cols=33 Identities=15% Similarity=0.043 Sum_probs=24.0
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000759 324 FRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVL 356 (1299)
Q Consensus 324 LgG~~A~~IFAIGLLAAGqSSTITgT~AGQ~Vm 356 (1299)
++++++..++.++++.+.+++..++.++...++
T Consensus 284 ~g~~~~~~ii~~~~~~s~~~~~~~~~~~~sR~l 316 (471)
T PRK11387 284 VGIPYAADIFNFVILTAILSAANSGLYASGRML 316 (471)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 456788788888888887877777777764443
No 29
>PRK09664 tryptophan permease TnaB; Provisional
Probab=98.06 E-value=0.01 Score=70.85 Aligned_cols=154 Identities=12% Similarity=0.132 Sum_probs=83.4
Q ss_pred hhhhhHHhhhhhcccCChHHHHH-HhHHhhhhHHHHHHHHH---HHHHHHHHHHhhhhheecCCcHHHHHHhhcCcchhh
Q 000759 20 PAVLPVLLISIGYVDPGKWAVII-EGGAHFGFDLVALMLVF---NFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCV 95 (1299)
Q Consensus 20 a~LGPGfLmSIAyIDPGNIaTdl-qAGA~fGY~LLWVLLLA---tIl~~llQeLAARLGVVTGK~LAEicRe~Ypk~~~~ 95 (1299)
+.+|=.+|++...+|.|=++=-. .+|+-|-+.++-.++.- +.-++++-|...+.. .|.++..+.++..||.+.+
T Consensus 10 ~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~--~g~~l~tma~~~LG~~g~~ 87 (415)
T PRK09664 10 SAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYP--VGSSFNTITKDLIGNTWNI 87 (415)
T ss_pred chhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCHHHHHHHHcChHHHH
Confidence 78897888888899999776432 33444433333222222 222335666666664 5888999999999998888
Q ss_pred HHHHHHH---HHHHHHHHH---HHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhhcCcchhhHHHHhhhhhhHHHHHHH
Q 000759 96 FIGVQTE---LSVILLDLT---MVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLFIDELIMLNFQENYKAKLLW 169 (1299)
Q Consensus 96 ~LwI~ae---LAIIasDIa---EVIGtAIALNLLFGIPL~iGVLITavdt~lLL~lgs~~~~d~~~~~~y~G~RKlE~l~ 169 (1299)
+.|+... .+...+.+. +++...+.-..-.++|.+++.++.++..-.+++.+. ...++++.+
T Consensus 88 i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~~~i~~~~~~llF~~~~~~~v~~gt------------~~vd~~nr~- 154 (415)
T PRK09664 88 ISGITVAFVLYILTYAYISANGAIISETISMNLGYHANPRIVGICTAIFVASVLWISS------------LAASRITSL- 154 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHhch------------hHHHHHHHH-
Confidence 7776442 233333332 222222111011145666555555555555555543 223344433
Q ss_pred HHHHHHHHHHHHHhHhhhCCC
Q 000759 170 ICTAGIILLSYVLGVLISQPE 190 (1299)
Q Consensus 170 ~~LI~IM~L~FVv~afis~Pd 190 (1299)
+++.|.++|++.....-|+
T Consensus 155 --l~~~~ii~f~~~~~~l~~~ 173 (415)
T PRK09664 155 --FLGLKIISFVIVFGSFFFQ 173 (415)
T ss_pred --HHHHHHHHHHHHHHHHhhc
Confidence 4456677776644443343
No 30
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=98.02 E-value=0.0027 Score=75.62 Aligned_cols=143 Identities=14% Similarity=0.139 Sum_probs=77.1
Q ss_pred hhhh-hcccCChHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHhhhhheecCCc---------HHHHHHhhcCc-chhh
Q 000759 27 LISI-GYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKD---------LAQICGEEYDK-WTCV 95 (1299)
Q Consensus 27 LmSI-AyIDPGNIaTdlqAGA~fGY~LLWVLLLAtIl~~llQeLAARLGVVTGK~---------LAEicRe~Ypk-~~~~ 95 (1299)
.+++ +-+|+|||+--..|=+.=|-.-+..+.++.+++....+.-+-||+...+. .+--+++-.++ |..+
T Consensus 26 ~~ala~~vG~GNI~GVa~AI~~GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~yyi~~gl~~k~la~ 105 (416)
T PF01235_consen 26 CTALAGTVGTGNIAGVATAIAIGGPGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPMYYIEKGLGSKWLAI 105 (416)
T ss_pred HHHHHhccCcchHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHHHHHHHHhccchHHH
Confidence 3344 46999999887777666677666666677777776666665555543321 44445554443 2222
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhhcCcchhhHHHHhhhhhhHHHHHHHHHHHH
Q 000759 96 FIGVQTELSVI-LLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLFIDELIMLNFQENYKAKLLWICTAG 174 (1299)
Q Consensus 96 ~LwI~aeLAII-asDIaEVIGtAIALNLLFGIPL~iGVLITavdt~lLL~lgs~~~~d~~~~~~y~G~RKlE~l~~~LI~ 174 (1299)
+.-+++.++.. +..+.+.--++.+++--|++|.|...++.++.+.+. .++ |.+++-.+...++=
T Consensus 106 ~fai~~~~~~~~~~~~~Q~nsi~~~~~~~f~i~~~~~gi~l~~l~~~v-i~G--------------GikrI~~v~~~lVP 170 (416)
T PF01235_consen 106 LFAIFLIIAFGIGFNMVQANSIADALSSAFGIPPWITGIILAILVALV-IFG--------------GIKRIAKVSEKLVP 170 (416)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHH-HHc--------------chhHHHHHHHHHHH
Confidence 22222111111 112223334456666678997665544444443333 333 44555555555666
Q ss_pred HHHHHHHHhH
Q 000759 175 IILLSYVLGV 184 (1299)
Q Consensus 175 IM~L~FVv~a 184 (1299)
+|++.|++..
T Consensus 171 ~Ma~~Yi~~~ 180 (416)
T PF01235_consen 171 FMAILYILGG 180 (416)
T ss_pred HHHHHHHHHH
Confidence 7777776543
No 31
>PRK15049 L-asparagine permease; Provisional
Probab=98.01 E-value=0.085 Score=64.05 Aligned_cols=71 Identities=11% Similarity=0.038 Sum_probs=38.4
Q ss_pred hhhHHhhhhh-cccCChHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHhhhhheecCCcHHHHHHhhcCcchhhH
Q 000759 22 VLPVLLISIG-YVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 96 (1299)
Q Consensus 22 LGPGfLmSIA-yIDPGNIaTdlqAGA~fGY~LLWVLLLAtIl~~llQeLAARLGVVTGK~LAEicRe~Ypk~~~~~ 96 (1299)
+|=|-++..+ ++.||......-.++-.+| +..-++..+++..+-||+.++=. +| +...-.++.+|+.+.++
T Consensus 38 i~~G~~IGsGiF~~~g~~~~~aGp~~il~~--li~~i~~~~v~~slaELas~~P~-aG-g~y~y~~~~~G~~~gf~ 109 (499)
T PRK15049 38 IAIGGAIGTGLFLGAGARLQMAGPALALVY--LICGLFSFFILRALGELVLHRPS-SG-SFVSYAREFLGEKAAYV 109 (499)
T ss_pred HhhhccccchHHHhhHHHHHhcCCHHHHHH--HHHHHHHHHHHHHHHHHHHhCCC-CC-CHHHHHHHHhCcHhHHH
Confidence 3333333333 4566665544433333333 22233444455566777777664 44 66777888888876554
No 32
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=97.95 E-value=0.093 Score=62.32 Aligned_cols=72 Identities=15% Similarity=0.205 Sum_probs=40.1
Q ss_pred hhhHHhhhhh-cccCChHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHhhhhheecCCcHHHHHHhhcCcchhhHH
Q 000759 22 VLPVLLISIG-YVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFI 97 (1299)
Q Consensus 22 LGPGfLmSIA-yIDPGNIaTdlqAGA~fGY~LLWVLLLAtIl~~llQeLAARLGVVTGK~LAEicRe~Ypk~~~~~L 97 (1299)
++=|-++..+ ++.||......-.++-.+ .+..-++..++++.+-||+.++-. +| +..+-.++.||+++.++.
T Consensus 22 i~ig~~IGsGif~~~g~~~~~~G~~~~i~--~~i~~v~~~~~a~~~aEl~s~~P~-~G-g~~~~~~~~~g~~~gf~~ 94 (452)
T TIGR01773 22 LSIAGVIGAGLFVGSGSAIASAGPAALLA--YLLAGLLVVFIMRMLGEMAVANPD-TG-SFSTYADDAIGRWAGFTI 94 (452)
T ss_pred HHHhhhhhchHHHhhHHHHHhcCCHHHHH--HHHHHHHHHHHHHHHHHHHHhcCC-CC-CHHHHHHHHhCcHHHHHH
Confidence 3434444333 566665555332222222 222233445567777888887755 33 668888899999876653
No 33
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=97.93 E-value=0.014 Score=67.62 Aligned_cols=128 Identities=8% Similarity=0.067 Sum_probs=91.3
Q ss_pred hHHHHHhhhhhHHhhhhhcccCChHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhee-cCCcHHHHHHhhcCcc
Q 000759 14 VLYRLVPAVLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVV-TGKDLAQICGEEYDKW 92 (1299)
Q Consensus 14 ~~rkLLa~LGPGfLmSIAyIDPGNIaTdlqAGA~fGY~LLWVLLLAtIl~~llQeLAARLGVV-TGK~LAEicRe~Ypk~ 92 (1299)
..|..++++| -+|.++|---=.+- |-=..||+.=.|-+++++++-.++=.....+|-. .-++..+.++.-.+++
T Consensus 5 ~~~~~f~~ig--~~vGAGfAsGqEi~---QFF~~~G~~s~~gIivs~vlf~~~g~vim~ig~~f~a~~y~~~~~~v~~~~ 79 (349)
T COG3949 5 FMRWAFAFIG--TVVGAGFASGQEIM---QFFGKYGVYSILGIILSTVLFTLSGAVIMTIGKKFNATSYREILKYVSGPK 79 (349)
T ss_pred HHHHHHHHHH--HhhcccccchHHHH---HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhHH
Confidence 4556666776 55555443333333 3335788888888888888888777777777765 4466788888878887
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhhc
Q 000759 93 TCVFIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFA 146 (1299)
Q Consensus 93 ~~~~LwI~aeLAIIasDIaEVIGtAIALNLLFGIPL~iGVLITavdt~lLL~lg 146 (1299)
+..+.=+++.+..+.+..-+..|++..++-.||+|.|+|.+++.....+.++++
T Consensus 80 ~~ki~d~~iif~lf~~~vVM~AGags~~~e~~~lP~wiGali~i~~v~i~lfl~ 133 (349)
T COG3949 80 FAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFGLPYWIGALIIILLVLILLFLG 133 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHHhCccHHHHHHHHHHHHHHHHHHh
Confidence 777766666677777777778888888888999999999777776666666554
No 34
>TIGR00930 2a30 K-Cl cotransporter.
Probab=97.92 E-value=0.048 Score=71.30 Aligned_cols=29 Identities=17% Similarity=0.106 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Q 000759 329 VPFAFVLVLFFSNQIIAVNWNLSGQVVLQ 357 (1299)
Q Consensus 329 A~~IFAIGLLAAGqSSTITgT~AGQ~Vme 357 (1299)
...+..+|++++.+++.+++.+++..++.
T Consensus 386 ~~~lI~ig~~~stlss~la~l~~asRvl~ 414 (953)
T TIGR00930 386 FPPLITAGIFSATLSSALASLVSAPRLFQ 414 (953)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678889999999999988888865554
No 35
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=97.84 E-value=0.1 Score=61.62 Aligned_cols=58 Identities=10% Similarity=-0.005 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhheecCCcHHHHHHhhcCcchhhHHHHHHHHHHHH
Q 000759 50 FDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSVIL 107 (1299)
Q Consensus 50 Y~LLWVLLLAtIl~~llQeLAARLGVVTGK~LAEicRe~Ypk~~~~~LwI~aeLAIIa 107 (1299)
++-+.++++++++..++--+.++.|..||.+-.-..|..||++.+.+..++-.+..++
T Consensus 29 ~~ai~aiilG~~i~~~~~~l~~~~G~~~Gl~~~v~sR~~FG~~Gs~~~~~l~~i~~ig 86 (386)
T TIGR02358 29 TRGLLAILLGHLVGVLLLSAAGVIGADTGLSAMGSLKLSLGSKGSVLPSLLNLLQLVG 86 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCcCHHHHHHHHHccchhhHHHHHHHHHHHH
Confidence 5677888889999999999999999999999999999999987776654444444444
No 36
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=97.84 E-value=0.085 Score=63.50 Aligned_cols=79 Identities=11% Similarity=0.088 Sum_probs=57.1
Q ss_pred HHhhhhhcccCChHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHhhhhheecCCcHHHHHHhhcCcchhhHHHHHHHHH
Q 000759 25 VLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELS 104 (1299)
Q Consensus 25 GfLmSIAyIDPGNIaTdlqAGA~fGY~LLWVLLLAtIl~~llQeLAARLGVVTGK~LAEicRe~Ypk~~~~~LwI~aeLA 104 (1299)
|+.+=.-+.|+||+.==..-|.+.|-+..|.++-..+-++.+=-++.=--..+|.++.+.- ++-||+.+.++.+.+.++
T Consensus 9 g~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvia~~~~~~~~~~l~-~~v~~~f~~if~~~i~l~ 87 (427)
T PF05525_consen 9 GFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVIAVAKSGGGIEDLA-SRVGPKFALIFTILIYLS 87 (427)
T ss_pred HHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHh-cccCcHHHHHHHHHHHHH
Confidence 4444466899999999999999999999999888888888777666433334555665554 456777777766554443
No 37
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=97.84 E-value=0.16 Score=61.93 Aligned_cols=50 Identities=16% Similarity=0.093 Sum_probs=31.8
Q ss_pred HhhhhHHHHHHHHH-----HHHHHHHHHHhhhhheecCCcHHHHHHhhcCcchhhH
Q 000759 46 AHFGFDLVALMLVF-----NFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 96 (1299)
Q Consensus 46 A~fGY~LLWVLLLA-----tIl~~llQeLAARLGVVTGK~LAEicRe~Ypk~~~~~ 96 (1299)
|.+|+.++...+++ .+.++.+.||+++..-.+| +...-.++-+|+.+.+.
T Consensus 29 a~~G~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~G-G~y~wv~~a~G~~~Gf~ 83 (507)
T TIGR00910 29 ATSGFHLVFFLLLGGILWFIPVALCAAEMATVDGWEEG-GIFAWVSNTLGERFGFA 83 (507)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCC-CeeeehhhccCccHHHH
Confidence 46667775444443 3356677888777642244 67777888889877654
No 38
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=97.80 E-value=0.077 Score=62.89 Aligned_cols=73 Identities=12% Similarity=0.008 Sum_probs=50.1
Q ss_pred hhhhcccCChHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHhhhhheecCCcHHHHHHhhcCcchhhHHHHHH
Q 000759 28 ISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQT 101 (1299)
Q Consensus 28 mSIAyIDPGNIaTdlqAGA~fGY~LLWVLLLAtIl~~llQeLAARLGVVTGK~LAEicRe~Ypk~~~~~LwI~a 101 (1299)
+=.-+.|.||+..-..-|.+.|-...+.++-..+-++.+=-++.---..+| +-.+.+.++|||+...++..+.
T Consensus 4 lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~av~~~g-G~~~~l~~~~g~~f~~lf~~~~ 76 (378)
T TIGR00796 4 LFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLIALALVG-GGYDSLSARIGKVFGILFTVIL 76 (378)
T ss_pred HHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHheeeecC-CCHHHHHHHhChHHHHHHHHHH
Confidence 334589999999999999999988777666655555555444444333355 4556677789998887764433
No 39
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=97.77 E-value=0.024 Score=67.55 Aligned_cols=77 Identities=13% Similarity=0.179 Sum_probs=54.3
Q ss_pred hcccCChHHHHHHhHHhhh---hHHHHHHHHHHHHHHHHHHHhhhhheecCCcHHHHHHhhcCcchhhHHHHHHHHHHHH
Q 000759 31 GYVDPGKWAVIIEGGAHFG---FDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSVIL 107 (1299)
Q Consensus 31 AyIDPGNIaTdlqAGA~fG---Y~LLWVLLLAtIl~~llQeLAARLGVVTGK~LAEicRe~Ypk~~~~~LwI~aeLAIIa 107 (1299)
+-+...++.+..... .+| ++-++.+++.+++..++--+.++.|..||.+-.-..|..||.+...+..++-.+..++
T Consensus 26 ~~~~v~~~~~Ga~l~-~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r~Gl~~~v~sR~~FG~~Gs~~~~~~~~i~~ig 104 (442)
T TIGR00800 26 AAFNIATWAIGALGL-PLGLSWWQSVIAIILGNLLGGIFVALNSRAGAKYGLPFPVLSRASFGIYGSLLPSLLRIVMAIG 104 (442)
T ss_pred HhhhHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHhCCCcchhhhhhhhhhHhHHHHHHHHHHHHH
Confidence 334444454444333 233 4567788888899999999999999999999999999999987776655444444444
Q ss_pred H
Q 000759 108 L 108 (1299)
Q Consensus 108 s 108 (1299)
.
T Consensus 105 W 105 (442)
T TIGR00800 105 W 105 (442)
T ss_pred H
Confidence 3
No 40
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=97.76 E-value=0.2 Score=60.19 Aligned_cols=31 Identities=16% Similarity=0.091 Sum_probs=22.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000759 326 SPVVPFAFVLVLFFSNQIIAVNWNLSGQVVL 356 (1299)
Q Consensus 326 G~~A~~IFAIGLLAAGqSSTITgT~AGQ~Vm 356 (1299)
|+++..++.++++.+.+++.++...++..++
T Consensus 279 g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~ 309 (473)
T TIGR00905 279 GKWGAVLISLGLIISVLGSLLSWTMLAAEVP 309 (473)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777778888888888888777777764433
No 41
>PRK10580 proY putative proline-specific permease; Provisional
Probab=97.68 E-value=0.25 Score=59.02 Aligned_cols=108 Identities=8% Similarity=0.052 Sum_probs=51.4
Q ss_pred hhhHHhhhhh-cccCChHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHhhhhheecCCcHHHHHHhhcCcchhhHHHHH
Q 000759 22 VLPVLLISIG-YVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQ 100 (1299)
Q Consensus 22 LGPGfLmSIA-yIDPGNIaTdlqAGA~fGY~LLWVLLLAtIl~~llQeLAARLGVVTGK~LAEicRe~Ypk~~~~~LwI~ 100 (1299)
+|=|-++..+ ++.||..... +|...=+..+-..++..++++.+-||+.++-. +| +...-.++.+|+.+.++....
T Consensus 19 i~vg~~IG~Gif~~~g~~~~~--aG~~~~l~~~i~~i~~~~~a~~~aEl~s~~P~-~G-g~y~y~~~~~G~~~gf~~gw~ 94 (457)
T PRK10580 19 MALGSAIGTGLFYGSADAIKM--AGPSVLLAYIIGGVAAYIIMRALGEMSVHNPA-AS-SFSRYAQENLGPLAGYITGWT 94 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--hChHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CC-CHHHHHHHHcCcHHHHHHHHH
Confidence 4444444443 5667765543 33311111122223334455667888887664 33 566677888998776653222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-CChhHHHHH
Q 000759 101 TELSVILLDLTMVLGIAHGLNLLM-GVELSTCVF 133 (1299)
Q Consensus 101 aeLAIIasDIaEVIGtAIALNLLF-GIPL~iGVL 133 (1299)
.-+........+..+.+.-++.++ ..|.+..++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (457)
T PRK10580 95 YCFEILIVAIADVTAFGIYMGVWFPTVPHWIWVL 128 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCChHHHHH
Confidence 222222223334333333333333 346555433
No 42
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=97.64 E-value=0.26 Score=58.39 Aligned_cols=38 Identities=13% Similarity=0.177 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhhhhheecCCcHHHHHHhhcCcchhhHH
Q 000759 58 VFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFI 97 (1299)
Q Consensus 58 LAtIl~~llQeLAARLGVVTGK~LAEicRe~Ypk~~~~~L 97 (1299)
+..++++.+-||+.++-.. | +...-.++.+|+.+.++.
T Consensus 52 ~~~~~a~~~aEl~s~~P~~-G-g~y~~~~~~~G~~~gf~~ 89 (442)
T TIGR00908 52 MYLTFCFSLAELSTMIPTA-G-GGYGFARRAFGPWGGFLA 89 (442)
T ss_pred HHHHHHHHHHHHHHHcCCC-C-CHHHHHHHHhCcHHHHHH
Confidence 3455667789999998753 3 566777888999777653
No 43
>PRK10249 phenylalanine transporter; Provisional
Probab=97.64 E-value=0.28 Score=58.76 Aligned_cols=107 Identities=9% Similarity=0.091 Sum_probs=53.5
Q ss_pred hhhHHhhhhh-cccCChHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHhhhhheecCCcHHHHHHhhcCcchhhHHHHH
Q 000759 22 VLPVLLISIG-YVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQ 100 (1299)
Q Consensus 22 LGPGfLmSIA-yIDPGNIaTdlqAGA~fGY~LLWVLLLAtIl~~llQeLAARLGVVTGK~LAEicRe~Ypk~~~~~LwI~ 100 (1299)
+|=|-++..+ ++.||......-.++-.+|-+ .-++..+.++.+-||+.++=. +| +...-.++.+|+.+.++....
T Consensus 31 i~ig~~IGsGif~~~g~~~~~aGp~~~l~~li--~~~~~~~~~~~~aEl~~~~P~-~G-g~~~y~~~~~g~~~gf~~gw~ 106 (458)
T PRK10249 31 IALGGAIGTGLFLGIGPAIQMAGPAVLLGYGV--AGIIAFLIMRQLGEMVVEEPV-SG-SFAHFAYKYWGPFAGFLSGWN 106 (458)
T ss_pred hhhhcccchhHHHHHHHHHHhcCcHHHHHHHH--HHHHHHHHHHHHHHHHHhCCC-CC-CHHHHHHHHhChHHHHHHHHH
Confidence 4444444444 466666555322222222211 122334555566777777655 55 677788889998776553222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC-ChhHHHH
Q 000759 101 TELSVILLDLTMVLGIAHGLNLLMG-VELSTCV 132 (1299)
Q Consensus 101 aeLAIIasDIaEVIGtAIALNLLFG-IPL~iGV 132 (1299)
.-++.+.....|+.+.+.-++.+++ .|.|..+
T Consensus 107 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 139 (458)
T PRK10249 107 YWVMFVLVGMAELTAAGIYMQYWFPDVPTWIWA 139 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcCcHHHHH
Confidence 2222222334555555544444443 4655433
No 44
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=97.62 E-value=0.16 Score=60.79 Aligned_cols=87 Identities=10% Similarity=0.064 Sum_probs=57.7
Q ss_pred hhhhHHhhhhhcccCChHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHhhhhheecCC---cHHHHHHhhcCcchhhHH
Q 000759 21 AVLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGK---DLAQICGEEYDKWTCVFI 97 (1299)
Q Consensus 21 ~LGPGfLmSIAyIDPGNIaTdlqAGA~fGY~LLWVLLLAtIl~~llQeLAARLGVVTGK---~LAEicRe~Ypk~~~~~L 97 (1299)
.+|=-+++.-..+|+|=+.-=.+++-..=+-.+-.++++-++.+..+++-.|.-.-+++ +..+..++++|+.++++.
T Consensus 11 ~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~li 90 (415)
T COG0814 11 DLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYLGKKGGILI 90 (415)
T ss_pred hHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHhCcchHHHH
Confidence 45555666667888888877666554322223333444566677777777776665544 799999999999999887
Q ss_pred HHHHHHHHHH
Q 000759 98 GVQTELSVIL 107 (1299)
Q Consensus 98 wI~aeLAIIa 107 (1299)
.+...+.+.+
T Consensus 91 ~~s~~~~~~~ 100 (415)
T COG0814 91 GLSYFFALYG 100 (415)
T ss_pred HHHHHHHHHH
Confidence 6665554443
No 45
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=97.48 E-value=0.1 Score=63.29 Aligned_cols=79 Identities=14% Similarity=0.272 Sum_probs=59.0
Q ss_pred HhhhhheecCCcHHHHHHhhcCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhhcC
Q 000759 69 LSARIAVVTGKDLAQICGEEYDK-WTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAG 147 (1299)
Q Consensus 69 LAARLGVVTGK~LAEicRe~Ypk-~~~~~LwI~aeLAIIasDIaEVIGtAIALNLLFGIPL~iGVLITavdt~lLL~lgs 147 (1299)
.|-||==.-+-+.++.+-+||.. ..|++..+...+.....-++++.|+++-+.+++|+|..+++++..+..++...++.
T Consensus 94 ~A~~LRk~GkyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~gv~~~vgv~ig~ilm~~Yvv~GG 173 (529)
T COG4147 94 IAEYLRKLGKYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLGVPYHVGVVIGGILMMVYVVLGG 173 (529)
T ss_pred HHHHHHhcCCcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCceeehhhHhHHHHHHHHhcc
Confidence 34444444455789999888874 55555555555555566778999999999999999999999998888887777765
No 46
>TIGR00909 2A0306 amino acid transporter.
Probab=97.47 E-value=0.41 Score=56.29 Aligned_cols=36 Identities=11% Similarity=0.007 Sum_probs=26.2
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhh
Q 000759 324 FRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDF 359 (1299)
Q Consensus 324 LgG~~A~~IFAIGLLAAGqSSTITgT~AGQ~VmeGF 359 (1299)
.+|+++..+..++++.+.+++..+..++...++..+
T Consensus 273 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~ 308 (429)
T TIGR00909 273 LGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAM 308 (429)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777778888888888888888887775554443
No 47
>PRK10746 putative transport protein YifK; Provisional
Probab=97.45 E-value=0.5 Score=56.86 Aligned_cols=73 Identities=8% Similarity=-0.017 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhhhhheecCCcHHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-ChhHHHHHH
Q 000759 60 NFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMG-VELSTCVFL 134 (1299)
Q Consensus 60 tIl~~llQeLAARLGVVTGK~LAEicRe~Ypk~~~~~LwI~aeLAIIasDIaEVIGtAIALNLLFG-IPL~iGVLI 134 (1299)
.+++..+-||+.++=. +| +...-+++.+|+.+.+......-++-+..-..|+.+.+.-++..++ +|.|...++
T Consensus 57 ~~v~~~~aEl~~~~P~-sG-g~~~y~~~~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~~~~~~~~~~ 130 (461)
T PRK10746 57 FFIMRSMGEMLFLEPV-TG-SFAVYAHRYMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPEMAQWIPALI 130 (461)
T ss_pred HHHHHHHHHHHHhcCC-CC-CHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchHHHHHH
Confidence 3445556777777643 45 6777888888886655432211122222223344444444444444 466554443
No 48
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.43 E-value=0.019 Score=67.72 Aligned_cols=78 Identities=13% Similarity=0.104 Sum_probs=51.5
Q ss_pred hhcccCChHHHHHHhHHhhh---hHHHHHHHHHHHHHHHHHHHhhhhheecCCcHHHHHHhhcCcchhhHHHHHHHHHHH
Q 000759 30 IGYVDPGKWAVIIEGGAHFG---FDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSVI 106 (1299)
Q Consensus 30 IAyIDPGNIaTdlqAGA~fG---Y~LLWVLLLAtIl~~llQeLAARLGVVTGK~LAEicRe~Ypk~~~~~LwI~aeLAII 106 (1299)
.+-+-+.++.+.... ..+| ++-++.++++++++.++--+.+++|.-||.+-....|..||.+.+.+..++..+..+
T Consensus 20 ~~~~~~~~~~~G~~~-~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r~Gl~~~v~sR~~FG~~Gs~l~~~l~~i~~i 98 (440)
T PF02133_consen 20 GANISIATFVTGALG-VALGLSFWQAILAILIGNLLGAILVALMGIIGPRTGLPTMVLSRASFGYRGSKLPSLLRAISAI 98 (440)
T ss_dssp HHH-SCHHH-HHHHH-HCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHCC---HHHHTTTTS-TTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HccCchHHHHHHHHHHHHHHHHHHHHHhcccccccCCCchhcchhccCcchHHHHHHHHHHHHH
Confidence 334445555555544 4555 346677888899999999999999999999999999999998777665554444444
Q ss_pred HH
Q 000759 107 LL 108 (1299)
Q Consensus 107 as 108 (1299)
+.
T Consensus 99 gW 100 (440)
T PF02133_consen 99 GW 100 (440)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 49
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=97.43 E-value=0.53 Score=56.63 Aligned_cols=33 Identities=18% Similarity=0.084 Sum_probs=20.4
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000759 324 FRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVL 356 (1299)
Q Consensus 324 LgG~~A~~IFAIGLLAAGqSSTITgT~AGQ~Vm 356 (1299)
.++++...++.+.++.+.+++...+.++...++
T Consensus 289 ~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l 321 (469)
T PRK11049 289 VGLPAAASVINFVVLTSAASSANSGVFSTSRML 321 (469)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666766666666664443
No 50
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=97.42 E-value=0.53 Score=56.38 Aligned_cols=71 Identities=15% Similarity=0.111 Sum_probs=39.1
Q ss_pred hhhHHhhhhh-cccCChHHHHHHhHH---hhhhHHHHHHHHHHHHHHHHHHHhhhhheecCCcHHHHHHhhcCcchhhHH
Q 000759 22 VLPVLLISIG-YVDPGKWAVIIEGGA---HFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFI 97 (1299)
Q Consensus 22 LGPGfLmSIA-yIDPGNIaTdlqAGA---~fGY~LLWVLLLAtIl~~llQeLAARLGVVTGK~LAEicRe~Ypk~~~~~L 97 (1299)
+|=|-++..+ ++.+|...+. +|. -++| +..-++..++++.+-||+.++=.. |-+...-.++.+|+.+.++.
T Consensus 12 l~vg~~IGsGif~~~~~~~~~--~Gp~~~i~~~--~i~~~~~~~~a~~~aEl~s~~P~~-gG~~~~~~~~~~g~~~gf~~ 86 (478)
T TIGR00913 12 IALGGTIGTGLLVGSGTALAT--GGPAGLLIGY--AIMGSIIYCVMQSLGEMATFYPVV-SGSFATYASRFVDPAFGFAV 86 (478)
T ss_pred HHHhccccchhhhcchhHHHh--cCCHHHHHHH--HHHHHHHHHHHHHHHHHHHhCCCC-CCCHHHHHHHHcCcHHHHHH
Confidence 4444444333 4666666553 342 2222 222233455556668888877643 33566777888888776543
No 51
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=97.37 E-value=0.57 Score=56.26 Aligned_cols=30 Identities=3% Similarity=0.102 Sum_probs=17.3
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhhHH
Q 000759 324 FRSPVVPFAFVLVLFFSNQIIAVNWNLSGQ 353 (1299)
Q Consensus 324 LgG~~A~~IFAIGLLAAGqSSTITgT~AGQ 353 (1299)
+|.+++..++.+.++.+.+++.++..++..
T Consensus 299 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s 328 (482)
T TIGR00907 299 LGNKAGAIFLLCLILVTSFFCAITCMTANS 328 (482)
T ss_pred hCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433355555566666666666666666653
No 52
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=97.36 E-value=0.65 Score=56.35 Aligned_cols=79 Identities=14% Similarity=0.089 Sum_probs=57.5
Q ss_pred HHhhhhhcccCChHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHhhhhheecCCcHHHHHHhhcCcchhhHHHHHHHHH
Q 000759 25 VLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELS 104 (1299)
Q Consensus 25 GfLmSIAyIDPGNIaTdlqAGA~fGY~LLWVLLLAtIl~~llQeLAARLGVVTGK~LAEicRe~Ypk~~~~~LwI~aeLA 104 (1299)
|+.+=.-+.|+||+.==..-|.+.|-+..|.++-..+-++.+=-++.=-...+|-++.+.- ++-+|+...++.+.+-++
T Consensus 14 G~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgiiava~~~g~~~~l~-~rv~~~f~~~f~~~i~l~ 92 (439)
T PRK15433 14 GFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALAKVGGGVDSLS-TPIGKVAGVLLATVCYLA 92 (439)
T ss_pred HHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHh-hhcchHHHHHHHHHHHHH
Confidence 6666677999999999999999999999998888888887776665544445664555554 456777776665544433
No 53
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=97.36 E-value=0.61 Score=55.80 Aligned_cols=37 Identities=11% Similarity=0.204 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhhhhheecCCcHHHHHHhhcCcchhhHH
Q 000759 59 FNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFI 97 (1299)
Q Consensus 59 AtIl~~llQeLAARLGVVTGK~LAEicRe~Ypk~~~~~L 97 (1299)
+.+.++.+-||+.++=. +| +.-.-.++.+|+.+.+..
T Consensus 38 ~~~~al~~aEL~s~~P~-~G-g~y~y~~~~~G~~~gf~~ 74 (446)
T PRK10197 38 VVMIMRMLAEMAVATPD-TG-SFSTYADKAIGRWAGYTI 74 (446)
T ss_pred HHHHHHHHHHHHHhCCC-CC-CHHHHHHHHcChHHHHHH
Confidence 34456666777777654 44 678888999999776643
No 54
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=97.30 E-value=0.27 Score=59.39 Aligned_cols=40 Identities=10% Similarity=0.101 Sum_probs=32.0
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhCCC
Q 000759 323 VFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLD 363 (1299)
Q Consensus 323 ~LgG~~A~~IFAIGLLAAGqSSTITgT~AGQ~VmeGFLgl~ 363 (1299)
.+ |.|+.++.++.++.-+++|.+++.|-++...+-.++.+
T Consensus 329 ~~-g~~g~~~v~i~~~lFaftTii~~~yyge~~~~yl~~~~ 368 (425)
T TIGR00835 329 GL-GSFGAVFVAVALFLFAFSTIIGWYYYGEKNAEFLKGNK 368 (425)
T ss_pred Hh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35 57888999999999999999999998877665555544
No 55
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=97.27 E-value=0.44 Score=57.60 Aligned_cols=72 Identities=15% Similarity=-0.009 Sum_probs=41.2
Q ss_pred HHhhhhh--cccCChH-----HHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHhhhhheecCCcHHHHHHhhcC-cchhhH
Q 000759 25 VLLISIG--YVDPGKW-----AVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYD-KWTCVF 96 (1299)
Q Consensus 25 GfLmSIA--yIDPGNI-----aTdlqAGA~fGY~LLWVLLLAtIl~~llQeLAARLGVVTGK~LAEicRe~Yp-k~~~~~ 96 (1299)
||+++++ .+|-||+ .++...|+.|= +++++ ....+++++..+=-=+|--++++-.+..|+.-+ |++.++
T Consensus 13 GFILAa~GsAVGLGNiWrFPy~~~~nGGgAFl--l~yli-~~l~~GiPlli~Ef~iGr~~~~~~~~a~~~l~~~~~~~~~ 89 (439)
T COG0733 13 GFILAAAGSAVGLGNIWRFPYMAGENGGGAFL--LPYLI-FLLLVGIPLLLAEFAIGRRGRKNAVGAFRKLAPKKKWEWI 89 (439)
T ss_pred HHHHHHHHHHhcccccccCCeEeeecCcchHH--HHHHH-HHHHHhHHHHHHHHHhhhhcCCChhHHHHHhccCccchhh
Confidence 4555443 7999997 45566666553 23322 222334444333334555677888888887655 666665
Q ss_pred HHH
Q 000759 97 IGV 99 (1299)
Q Consensus 97 LwI 99 (1299)
=|+
T Consensus 90 G~~ 92 (439)
T COG0733 90 GWF 92 (439)
T ss_pred hhH
Confidence 554
No 56
>PRK11021 putative transporter; Provisional
Probab=97.17 E-value=0.86 Score=53.63 Aligned_cols=36 Identities=17% Similarity=0.120 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhhhhheecCCcHHHHHHhhcCcchhhH
Q 000759 59 FNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 96 (1299)
Q Consensus 59 AtIl~~llQeLAARLGVVTGK~LAEicRe~Ypk~~~~~ 96 (1299)
..+.++.+-|++.++-. +| +.-.-.++.+|+.+.++
T Consensus 45 ~~~~al~~aEl~s~~P~-aG-G~y~y~~~~~G~~~gf~ 80 (410)
T PRK11021 45 IFPIAIVFARLGRHFPH-AG-GPAHFVGMAFGPRLGRV 80 (410)
T ss_pred HHHHHHHHHHHHHhCCC-CC-CHHHhHHHHhCchhHHH
Confidence 44555666777777764 45 66777888899877654
No 57
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=97.13 E-value=0.37 Score=58.43 Aligned_cols=96 Identities=10% Similarity=0.086 Sum_probs=61.7
Q ss_pred HhHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhee--cCCcHHHHHHhhcCcchhhH----HHHHHHHHHHHHHHHHHHHH
Q 000759 43 EGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVV--TGKDLAQICGEEYDKWTCVF----IGVQTELSVILLDLTMVLGI 116 (1299)
Q Consensus 43 qAGA~fGY~LLWVLLLAtIl~~llQeLAARLGVV--TGK~LAEicRe~Ypk~~~~~----LwI~aeLAIIasDIaEVIGt 116 (1299)
.+=+..|-..+.+-+++-++.+++-+.-+-+-+. +-.+....+++.+|++..++ .|++- +..-++|+.++
T Consensus 39 ~~I~~AGPSvlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~~lG~~Agf~tgW~YW~~w----v~v~~ae~tAi 114 (462)
T COG1113 39 SAIAMAGPSVLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARKYLGPWAGFLTGWTYWFFW----VLVGIAELTAI 114 (462)
T ss_pred hhhhhhCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHhcchHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 3334455666666666666677776666666665 24489999999999876543 34332 22334566677
Q ss_pred HHHHHHhh-CChhHHHHHHHHHHHHHH
Q 000759 117 AHGLNLLM-GVELSTCVFLAAADAILF 142 (1299)
Q Consensus 117 AIALNLLF-GIPL~iGVLITavdt~lL 142 (1299)
++=++.-| ++|.|+.+++..+....+
T Consensus 115 ~~y~~~WfP~vP~Wv~al~~~~l~~~~ 141 (462)
T COG1113 115 GIYLQFWFPDVPQWVFALAAVVLLLAV 141 (462)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 77777777 579999988766554443
No 58
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=97.08 E-value=1.2 Score=53.65 Aligned_cols=40 Identities=10% Similarity=0.068 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHhhhhheecCCcHHHHHHhhcCcchhhH
Q 000759 56 MLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 96 (1299)
Q Consensus 56 LLLAtIl~~llQeLAARLGVVTGK~LAEicRe~Ypk~~~~~ 96 (1299)
.+...+.++.+.||+.|+-...| +..+-.++.+|+...++
T Consensus 45 ~~~~~~~al~~aeL~s~~P~~gG-G~y~y~~~~fG~~~gf~ 84 (468)
T TIGR03810 45 GVGMLALAFSFQNLANKKPELDG-GVYSYAKAGFGPFMGFI 84 (468)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCC-ChhhhHHhHcCcHHHHH
Confidence 34446667788899888766554 67788899999977654
No 59
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=96.87 E-value=1.7 Score=51.98 Aligned_cols=118 Identities=13% Similarity=0.202 Sum_probs=73.1
Q ss_pred HHhhhhhcccCChHHHHHHhHHhhhhHHHHHHHHHH----------HHHHHHHHHhhhhheecCCcHHHHHHhhcCcch-
Q 000759 25 VLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFN----------FAAIFCQYLSARIAVVTGKDLAQICGEEYDKWT- 93 (1299)
Q Consensus 25 GfLmSIAyIDPGNIaTdlqAGA~fGY~LLWVLLLAt----------Il~~llQeLAARLGVVTGK~LAEicRe~Ypk~~- 93 (1299)
++..++.|+.++..... -||.|.|.|-|++|-.. +++=-+-+.+=|++.+ ++-|.+|.+|-...
T Consensus 47 Amt~~aTYisaSSFigG--pgaayk~GlgwvlLa~iqvp~~~l~lgvlgkk~~~~ar~~nAl---tI~D~l~~RY~s~fl 121 (473)
T COG4145 47 AMTFTATYISASSFIGG--PGAAYKYGLGWVLLAMIQVPTVWLALGVLGKKFAILAREYNAL---TINDLLFARYQSRFL 121 (473)
T ss_pred hhHHHHHHHHHhhhcCC--CcHHHHhchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCe---eHHHHHHHHhcchHH
Confidence 33444556655555443 37788888999655321 1111233444455554 46777888876432
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhhcC
Q 000759 94 CVFIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAG 147 (1299)
Q Consensus 94 ~~~LwI~aeLAIIasDIaEVIGtAIALNLLFGIPL~iGVLITavdt~lLL~lgs 147 (1299)
.|..-+..-+..+.....+++|.|=-+.-..|+|--.|.+++++.+.+.-+++.
T Consensus 122 ~~las~~Lifff~~~m~~qfiGgarLlE~~~gidY~tgL~ifa~~V~iYt~fGG 175 (473)
T COG4145 122 VWLASLSLIFFFVGAMTVQFIGGARLLETALGIDYTTGLLIFAVSVAIYTAFGG 175 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHCCCchhhHHHHHHHHHHHHhhcc
Confidence 333333333444444556788988878877899999999999988887777765
No 60
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=96.84 E-value=1.9 Score=52.27 Aligned_cols=36 Identities=14% Similarity=0.085 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhhhhheecCCcHHHHHHhhcCcchhhH
Q 000759 59 FNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 96 (1299)
Q Consensus 59 AtIl~~llQeLAARLGVVTGK~LAEicRe~Ypk~~~~~ 96 (1299)
+.+.++.+-||+.++=. +| +.-.-.++.||+.+.++
T Consensus 90 ~~~~al~~aELas~~P~-sG-G~y~~~~~~~g~~~gf~ 125 (501)
T TIGR00911 90 SIVGALVYAELGTTIPK-SG-GEYNYILEVFGPLLAFL 125 (501)
T ss_pred HHHHHHHHHHHHhhcCC-CC-chhhhHHhHhCCHHHHH
Confidence 45556667777777653 33 56667778899877654
No 61
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=96.81 E-value=1.8 Score=51.59 Aligned_cols=38 Identities=5% Similarity=-0.104 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhhhhheecCCcHHHHHHhhcCcchhhH
Q 000759 57 LVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 96 (1299)
Q Consensus 57 LLAtIl~~llQeLAARLGVVTGK~LAEicRe~Ypk~~~~~ 96 (1299)
+.+.+.++.+-||+.++=. +| +.-.-.++.||+.+.++
T Consensus 51 ~~~l~~al~~aEL~s~~P~-aG-G~y~~~~~~~g~~~gf~ 88 (445)
T PRK10644 51 IGALGLSMVYAKMSSLDPS-PG-GSYAYARRCFGPFLGYQ 88 (445)
T ss_pred HHHHHHHHHHHHHHhhCCC-CC-ChhHHHHHHcCchHHHH
Confidence 4566677788888888753 34 66777888899977653
No 62
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=96.79 E-value=1.9 Score=51.40 Aligned_cols=43 Identities=12% Similarity=-0.038 Sum_probs=27.0
Q ss_pred HHHHH--HHHHHHHHHHHHHhhhhheecCCcHHHHHHhhcCcchhhH
Q 000759 52 LVALM--LVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 96 (1299)
Q Consensus 52 LLWVL--LLAtIl~~llQeLAARLGVVTGK~LAEicRe~Ypk~~~~~ 96 (1299)
+.|++ ++..+.++.+-||+.++=.. | +.-.-.++.||+.+.++
T Consensus 47 l~~li~~v~~l~~al~~aEl~s~~P~~-G-G~y~y~~~~~g~~~gf~ 91 (445)
T PRK11357 47 LAFVIGGLIVIPQMCVYAELSTAYPEN-G-ADYVYLKNAGSRPLAFL 91 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCC-C-CceeeHHHhcCChhHHH
Confidence 34444 44566777888888887653 3 33345667788876654
No 63
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=96.78 E-value=2 Score=51.69 Aligned_cols=66 Identities=12% Similarity=0.138 Sum_probs=36.6
Q ss_pred HHhhhhhcccCChHHHHHHhHHhhhhHHHHHHHHHH-----HHHHHHHHHhhhhheecCCcHHHHHHhhcCcchhhH
Q 000759 25 VLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFN-----FAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 96 (1299)
Q Consensus 25 GfLmSIAyIDPGNIaTdlqAGA~fGY~LLWVLLLAt-----Il~~llQeLAARLGVVTGK~LAEicRe~Ypk~~~~~ 96 (1299)
.++..++-++-.++.+. |.+|...+...+++. +.++.+-||+.++=. .| +...-.|+.+|+.+.+.
T Consensus 9 ~~~~~~~v~~~~~~~~~----a~~G~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~-~G-G~y~~~~~a~G~~~gf~ 79 (474)
T TIGR03813 9 AIMNITAVVSLRGLPAE----AEYGLSAAFYYLFAAIFFLVPVSLVAAELATAWPE-KG-GVFRWVGEAFGARWGFL 79 (474)
T ss_pred HHHHHHHHHHhhcchHH----HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-CC-CceeeHhhhcChhHHHH
Confidence 33444444455555433 455565543333322 345566777776643 23 56677888899876653
No 64
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=96.64 E-value=1.9 Score=49.66 Aligned_cols=36 Identities=11% Similarity=0.158 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhhhhheecCCcHHHHHHhhcCcchhhHH
Q 000759 59 FNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFI 97 (1299)
Q Consensus 59 AtIl~~llQeLAARLGVVTGK~LAEicRe~Ypk~~~~~L 97 (1299)
+.+..+++-+++.|. -|+++.|..++.+||+..+++
T Consensus 47 ~~~~~~~~~~l~~~~---p~~~~~~~~~~~~Gk~~g~~~ 82 (359)
T TIGR00912 47 IIFLLCLMIKIMSKF---PEKNFSEILSKYLGKILGRLL 82 (359)
T ss_pred HHHHHHHHHHHHHHC---CCCCHHHHHHHHhhHHHHHHH
Confidence 334444455555554 378999999999999877653
No 65
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=96.63 E-value=2.7 Score=51.17 Aligned_cols=38 Identities=11% Similarity=0.239 Sum_probs=31.5
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhC
Q 000759 323 VFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLR 361 (1299)
Q Consensus 323 ~LgG~~A~~IFAIGLLAAGqSSTITgT~AGQ~VmeGFLg 361 (1299)
.+ |.|+.++.+++++.-+++|.+.+.|=++-.++=..+
T Consensus 346 ~~-g~~G~~fv~i~l~lFafTTIlg~yyyge~~~~fl~~ 383 (452)
T COG1115 346 HL-GSWGSYFVAIALFLFAFTTILGWYYYGEKNIEFLFG 383 (452)
T ss_pred hc-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45 689999999999999999999999988776654444
No 66
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=96.18 E-value=3.8 Score=48.01 Aligned_cols=36 Identities=6% Similarity=-0.033 Sum_probs=26.5
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 000759 323 VFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQD 358 (1299)
Q Consensus 323 ~LgG~~A~~IFAIGLLAAGqSSTITgT~AGQ~VmeG 358 (1299)
..+|++...++.++++.+.+.+.++...+...++..
T Consensus 266 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~ 301 (426)
T PF13520_consen 266 AVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYA 301 (426)
T ss_dssp HHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccchhhcchhhcccc
Confidence 344678888888888888888888888777444433
No 67
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=96.06 E-value=5.2 Score=48.51 Aligned_cols=74 Identities=14% Similarity=0.195 Sum_probs=57.0
Q ss_pred HHhhhhhcccCChHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHhhhhheecCCcHHHHHHhhcCcchhhHHHH
Q 000759 25 VLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGV 99 (1299)
Q Consensus 25 GfLmSIAyIDPGNIaTdlqAGA~fGY~LLWVLLLAtIl~~llQeLAARLGVVTGK~LAEicRe~Ypk~~~~~LwI 99 (1299)
|+..=+-+.|+||+.==-..|...|....|.++-..+-++.+=-+..=-....|++.-+.-+ +-+||...++-+
T Consensus 11 GfmLFalFFGAGNlIFPP~LG~~aG~~~~~A~lGFllTgVglPlLgiIa~a~~g~~~~~l~~-~i~~~fg~~f~~ 84 (431)
T COG1114 11 GFMLFALFFGAGNLIFPPMLGLHAGEHVWPAILGFLLTGVGLPLLGIIAVALYGGGVESLAT-RIGPWFGVLFAI 84 (431)
T ss_pred HHHHHHHHhcCCCccCChhhhhhcCccHHHHHHHHHHHHhhHHHHHHHHhhccCCCHHHHhh-hccchHHHHHHH
Confidence 56666678999999999999999999998888888777777776666666678887766654 467776665433
No 68
>PRK10836 lysine transporter; Provisional
Probab=95.96 E-value=5.8 Score=48.19 Aligned_cols=31 Identities=6% Similarity=-0.107 Sum_probs=19.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000759 326 SPVVPFAFVLVLFFSNQIIAVNWNLSGQVVL 356 (1299)
Q Consensus 326 G~~A~~IFAIGLLAAGqSSTITgT~AGQ~Vm 356 (1299)
.+++..++.++++.+.+++.....+++..++
T Consensus 293 ~~~~~~ii~~~il~a~~~~~n~~~~~~sR~l 323 (489)
T PRK10836 293 LLSAAAVMNAVILTAVLSAGNSGMYASTRML 323 (489)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666677777777777664443
No 69
>PRK10655 potE putrescine transporter; Provisional
Probab=95.77 E-value=6.1 Score=46.98 Aligned_cols=34 Identities=9% Similarity=-0.052 Sum_probs=22.0
Q ss_pred HHHHHHHHHhhhhheecCCcHHHHHHhhcCcchhhH
Q 000759 61 FAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 96 (1299)
Q Consensus 61 Il~~llQeLAARLGVVTGK~LAEicRe~Ypk~~~~~ 96 (1299)
+.++.+-|++.++=. +| +...-.++.||+...++
T Consensus 53 ~~a~~~aeL~~~~P~-~G-G~y~y~~~~~G~~~gf~ 86 (438)
T PRK10655 53 ALAYAFAKCGMFSRK-SG-GMGGYAEYAFGKSGNFM 86 (438)
T ss_pred HHHHHHHHHhhhCCC-CC-chHHHHHHHcCcchHHH
Confidence 346666777766533 33 55777888899876654
No 70
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=95.54 E-value=7 Score=46.01 Aligned_cols=29 Identities=10% Similarity=0.055 Sum_probs=21.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 000759 326 SPVVPFAFVLVLFFSNQIIAVNWNLSGQV 354 (1299)
Q Consensus 326 G~~A~~IFAIGLLAAGqSSTITgT~AGQ~ 354 (1299)
|.+...+..++.+.+.+++.+++..+...
T Consensus 283 g~~~~~~i~~~~~~~~~~~~~~~~~~~sR 311 (466)
T COG0531 283 GNWGAIIIAILALLSLFGSLLAWILAVSR 311 (466)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777788888888888887877777643
No 71
>PRK09928 choline transport protein BetT; Provisional
Probab=95.28 E-value=11 Score=48.25 Aligned_cols=86 Identities=26% Similarity=0.349 Sum_probs=44.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhCC------CcCcchHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHH
Q 000759 327 PVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRL------DIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFT 400 (1299)
Q Consensus 327 ~~A~~IFAIGLLAAGqSSTITgT~AGQ~VmeGFLgl------~~~~w~rrLitRlIAIIPALiVal~~G~~~~~qLLi~a 400 (1299)
|++.++..+. +...+...+|...++.+|+..+--. +.++|.|.+-..++++++..+ ....|.+ ..|-
T Consensus 406 P~~~i~~~l~-~il~~iFfvTSaDS~s~Vla~lts~g~~~~~~pp~~~RifW~v~ig~la~~L-L~~GGL~-aLQt---- 478 (679)
T PRK09928 406 PAFTFSASVA-TITGLLFYVTSADSGALVLGNFTSKLKDINSDAPNWLRVFWSVAIGLLTLGM-LMTNGIS-ALQN---- 478 (679)
T ss_pred cHHHHHHHHH-HHHHHHHHHhcchHHHHHHHHHHcCCCCCCCCCCcceeeHHHHHHHHHHHHH-HHhcCHH-HHHH----
Confidence 4443333333 3334557788889998888776532 445665544333444444433 2222322 2222
Q ss_pred HHHHHHHHhHHHHHHHHHHh
Q 000759 401 QVMVAIMLPSSVIPLFRVAS 420 (1299)
Q Consensus 401 QVI~SL~LPFaLIPLL~ftN 420 (1299)
+.....|||++|.++...+
T Consensus 479 -~sii~alPf~~I~ll~~~s 497 (679)
T PRK09928 479 -TTVIMGLPFSFVIFFVMAG 497 (679)
T ss_pred -HHHHHHHHHHHHHHHHHHH
Confidence 2233678888877665543
No 72
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=95.25 E-value=12 Score=46.84 Aligned_cols=32 Identities=3% Similarity=-0.154 Sum_probs=23.6
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000759 324 FRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVV 355 (1299)
Q Consensus 324 LgG~~A~~IFAIGLLAAGqSSTITgT~AGQ~V 355 (1299)
.|.+++..++.++++.+..++.++..++...+
T Consensus 308 ~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRi 339 (557)
T TIGR00906 308 VGWGPAKYIVAVGALCGMSTSLLGGMFPLPRV 339 (557)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888888888888777776443
No 73
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=94.84 E-value=5.2 Score=49.84 Aligned_cols=28 Identities=11% Similarity=0.166 Sum_probs=17.9
Q ss_pred ccccCCCchHHHHHHHHHHHHHHHHHHH
Q 000759 423 QIMGVHKISQYHEFLVLITFMGMLGLKL 450 (1299)
Q Consensus 423 ~IMGefrNs~~~nILawli~llIi~LNI 450 (1299)
=.-|++..+++.+...+++++.+++.-+
T Consensus 446 f~~gp~~lGk~s~p~~~i~v~w~lf~~v 473 (550)
T KOG1289|consen 446 FRPGPFNLGKFSKPIGIIAVLWVLFMIV 473 (550)
T ss_pred cCCCCccccccccchHHHHHHHHHHHHH
Confidence 3457777777777777776555554433
No 74
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=94.46 E-value=0.76 Score=55.15 Aligned_cols=30 Identities=10% Similarity=-0.047 Sum_probs=23.8
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHhhH
Q 000759 323 VFRSPVVPFAFVLVLFFSNQIIAVNWNLSG 352 (1299)
Q Consensus 323 ~LgG~~A~~IFAIGLLAAGqSSTITgT~AG 352 (1299)
.+++++...++.++++.+.+++.....+++
T Consensus 282 ~~~~~~~~~i~~~~~l~s~~s~~~~~~~~~ 311 (478)
T PF00324_consen 282 YSGGPWLAWIVNAGILISAFSSANASLYAA 311 (478)
T ss_pred hcccccccceecccchhhhhhhhhhhhccc
Confidence 355678888888888888888888877776
No 75
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=94.40 E-value=18 Score=44.96 Aligned_cols=82 Identities=11% Similarity=0.159 Sum_probs=52.0
Q ss_pred cCChHHHHHHhHHhhhhHH-----HHHHHHHHHHHHHHHHHhhhhheecCCcHHHHHHhhcCcchhhHHHHH-HHHHHHH
Q 000759 34 DPGKWAVIIEGGAHFGFDL-----VALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQ-TELSVIL 107 (1299)
Q Consensus 34 DPGNIaTdlqAGA~fGY~L-----LWVLLLAtIl~~llQeLAARLGVVTGK~LAEicRe~Ypk~~~~~LwI~-aeLAIIa 107 (1299)
|.=|+-+..-++.-+...| +-.+++++++.+++-.+.+|-|..+|-+....+|.-||-+.+.+-.++ +.+|+.=
T Consensus 53 ~~~nv~~~~~aa~~~~lGLS~~qallai~vG~~iv~i~m~Lng~~G~~~gIpFpv~~RaSFGi~Ga~~p~l~R~i~A~~W 132 (497)
T COG1953 53 MVHNVPTYMLAAGLFELGLSPWQALLAILVGNLIVAIFMVLNGHAGSKYGIPFPVLSRASFGIYGANFPALIRAIVAIVW 132 (497)
T ss_pred hhccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccCcccccCCCchHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 3334444444444443333 445666778888888999999999999999999999986554432222 3334443
Q ss_pred HHHHHHHH
Q 000759 108 LDLTMVLG 115 (1299)
Q Consensus 108 sDIaEVIG 115 (1299)
.-++-.+|
T Consensus 133 yGvqty~G 140 (497)
T COG1953 133 YGVQTYAG 140 (497)
T ss_pred HHHHHHHh
Confidence 44554444
No 76
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=93.89 E-value=19 Score=43.21 Aligned_cols=37 Identities=14% Similarity=-0.024 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhhhhheecCCcHHHHHHhhcCcchhhH
Q 000759 57 LVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 96 (1299)
Q Consensus 57 LLAtIl~~llQeLAARLGVVTGK~LAEicRe~Ypk~~~~~ 96 (1299)
+.+.++++.+.||+.|+=. +| +...-.++ +|+.+.+.
T Consensus 48 ~~~l~~al~~aEL~s~~P~-~G-G~y~y~~~-~g~~~gf~ 84 (435)
T PRK10435 48 IGAMSLAYVYARLATKNPQ-QG-GPIAYAGE-ISPAFGFQ 84 (435)
T ss_pred HHHHHHHHHHHHHHhhCCC-CC-ChhHHHHH-HCcHHHHH
Confidence 4466777888999998875 45 56666666 77766554
No 77
>PLN03074 auxin influx permease; Provisional
Probab=93.84 E-value=22 Score=43.81 Aligned_cols=62 Identities=10% Similarity=0.009 Sum_probs=31.3
Q ss_pred HHhhhhCCCc-CcchHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000759 355 VLQDFLRLDI-PGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRV 418 (1299)
Q Consensus 355 VmeGFLgl~~-~~w~rrLitRlIAIIPALiVal~~G~~~~~qLLi~aQVI~SL~LPFaLIPLL~f 418 (1299)
+.|..++.+. +....|++.|.+.++.+.+++.. .+.+..++-+...+....+-|.+=+++++
T Consensus 336 ~~e~~~~~~~~k~~~~r~~~R~~lv~~~~~iA~~--IP~fg~llsLvGs~~~s~l~~i~P~l~~l 398 (473)
T PLN03074 336 VWEKAIGVHDTKSICLRALARLPVVVPIWFLAII--FPFFGPINSAVGALLVSFTVYIIPSLAHM 398 (473)
T ss_pred HHHHHhcccccccHHHHHHHHHHHHHHHHHHHHH--ccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455544331 22334566778777777776653 22234455555555554444444444444
No 78
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=93.66 E-value=7.7 Score=48.70 Aligned_cols=34 Identities=9% Similarity=-0.042 Sum_probs=27.1
Q ss_pred chHHH---HHHHHHHHHHHHHHHHHHhhHHHHHhhhh
Q 000759 327 PVVPF---AFVLVLFFSNQIIAVNWNLSGQVVLQDFL 360 (1299)
Q Consensus 327 ~~A~~---IFAIGLLAAGqSSTITgT~AGQ~VmeGFL 360 (1299)
.++++ ++.++++.+..++...+.+++..++...-
T Consensus 315 ~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~amA 351 (554)
T KOG1286|consen 315 AGAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLYALA 351 (554)
T ss_pred cCccccchhhhHHHHHHHHHHHHHHhHHhHHHHHHHH
Confidence 45666 99999999999999999999966655543
No 79
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=91.76 E-value=38 Score=41.16 Aligned_cols=43 Identities=16% Similarity=0.100 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhheecCCcHHHHHHhhcCcchhhH
Q 000759 52 LVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 96 (1299)
Q Consensus 52 LLWVLLLAtIl~~llQeLAARLGVVTGK~LAEicRe~Ypk~~~~~ 96 (1299)
++...+...+.++.+-||+.++=. +| +.-.-.++-+|+.+.++
T Consensus 53 ~li~~i~~l~~als~aEL~s~~P~-aG-G~Y~~~~~~~g~~~gf~ 95 (475)
T TIGR03428 53 WPVVFVGQLLVALNFAELAARYPI-SG-AIYQWSRRMGGEVIGWF 95 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCC-CC-CHHHHHHHHcCccccHH
Confidence 333444455666677888887763 34 56666777788876654
No 80
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=91.29 E-value=43 Score=40.95 Aligned_cols=68 Identities=9% Similarity=-0.045 Sum_probs=37.4
Q ss_pred HHhhhhhcccCChHHHHHH-hHHhhhhHHHHHHHHH----HHHHHHHHHHhhhhheecCCcHHHHHHhhcCcchhhH
Q 000759 25 VLLISIGYVDPGKWAVIIE-GGAHFGFDLVALMLVF----NFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 96 (1299)
Q Consensus 25 GfLmSIAyIDPGNIaTdlq-AGA~fGY~LLWVLLLA----tIl~~llQeLAARLGVVTGK~LAEicRe~Ypk~~~~~ 96 (1299)
..+...+-++-+++....+ +|. -.++|.++.+ .+.++.+-||+.++=-.+| +.-.-.++-+|+.+.++
T Consensus 15 ~~~~~~~vig~~~~~~~~~~~G~---~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aG-G~Y~w~~~~~G~~~gf~ 87 (496)
T PRK15238 15 ILMIFTSVFGFANSPRAFYLMGY---SAIPWYILSAILFFIPFALMMAEYGSAFKDEKG-GIYSWMNKSVGPKFAFI 87 (496)
T ss_pred HHHHHHHHHhCCchHHHHHHcCh---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-cHHHHHHHHcCchHHHH
Confidence 3333344455566654333 332 1334444443 3345566777776543334 67778888899877754
No 81
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=90.79 E-value=36 Score=39.11 Aligned_cols=85 Identities=18% Similarity=0.173 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhee-cCCcHHHHHHhhcCcchhhHHHHH---HHHHHHHHH---HHHHHHHHHHHHHhhCCh
Q 000759 55 LMLVFNFAAIFCQYLSARIAVV-TGKDLAQICGEEYDKWTCVFIGVQ---TELSVILLD---LTMVLGIAHGLNLLMGVE 127 (1299)
Q Consensus 55 VLLLAtIl~~llQeLAARLGVV-TGK~LAEicRe~Ypk~~~~~LwI~---aeLAIIasD---IaEVIGtAIALNLLFGIP 127 (1299)
.++++.++++++-.+..+++-- -|+++.|..++.+||+....+.+. -.+...+.. ..+++. ..++-..|
T Consensus 37 ~~ll~~~~~l~~~~l~~~l~~~~p~~~l~~~~~~~~Gk~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~----~~~lp~TP 112 (320)
T PF03845_consen 37 SVLLGGLIGLLLALLIYYLLKRFPGKTLVEISEKLFGKWLGKIINLLYILYFLLISALVLREFSEFIK----TYLLPETP 112 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCcCC
Confidence 3455666666666666666664 899999999999999887653222 122222222 233332 22233568
Q ss_pred hHHHHHHHHHHHHHHH
Q 000759 128 LSTCVFLAAADAILFP 143 (1299)
Q Consensus 128 L~iGVLITavdt~lLL 143 (1299)
.|+..++..+.++...
T Consensus 113 ~~~i~~~~ll~~~y~a 128 (320)
T PF03845_consen 113 IWVIILLFLLVAAYAA 128 (320)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8877776655554443
No 82
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=90.58 E-value=3 Score=49.82 Aligned_cols=61 Identities=25% Similarity=0.287 Sum_probs=43.1
Q ss_pred CChHHHHHHhHHhhhhH--HHHHHHHHHHHHHHHHHHhhhhhee--cCCcHHHHHHhhcCcchhhHH
Q 000759 35 PGKWAVIIEGGAHFGFD--LVALMLVFNFAAIFCQYLSARIAVV--TGKDLAQICGEEYDKWTCVFI 97 (1299)
Q Consensus 35 PGNIaTdlqAGA~fGY~--LLWVLLLAtIl~~llQeLAARLGVV--TGK~LAEicRe~Ypk~~~~~L 97 (1299)
.|-|.--..| +.|||- +||+++-+.++ -.+|.+.+=..-+ -||++.|+++++.||..+.++
T Consensus 68 aGPI~GPi~a-a~~GwlPa~lWI~~G~if~-GaVHD~~sl~~SvR~~G~Si~~i~~~~lG~~~~~lf 132 (376)
T PF02554_consen 68 AGPIVGPILA-AQFGWLPALLWIVFGCIFA-GAVHDYGSLMASVRHKGKSIGEIAGKYLGKRAKKLF 132 (376)
T ss_pred cccchHHHHH-HHhcchHHHHHHHHccHHH-HHHHHHHHHhhhhcCCCccHHHHHHHHHHHHHHHHH
Confidence 3445555555 999996 88876655555 4556655555544 499999999999999777654
No 83
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=90.43 E-value=59 Score=41.02 Aligned_cols=71 Identities=25% Similarity=0.278 Sum_probs=38.4
Q ss_pred HHHHHHHhhHHHHHhhhh---CCCcCcchHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000759 343 IIAVNWNLSGQVVLQDFL---RLDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVA 419 (1299)
Q Consensus 343 SSTITgT~AGQ~VmeGFL---gl~~~~w~rrLitRlIAIIPALiVal~~G~~~~~qLLi~aQVI~SL~LPFaLIPLL~ft 419 (1299)
.=.+|..+++.++++-.- +.+.++|.|..--.+++++++.+ ++.|. +..| =++.-...|||+++-++...
T Consensus 417 ~FfiTsaDS~s~vl~~~ss~~~~~pp~~~r~~W~v~~~~ia~~l--L~~gg--l~aL---qt~~ii~alPF~~vll~~~~ 489 (537)
T COG1292 417 IFFVTSADSGSYVLAMISSRGGEDPPRWVRVFWGVLIGLIAAVL--LLIGG--LEAL---QTAAIITALPFSLVLLVMMF 489 (537)
T ss_pred HHHhhccchHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHH--HHhCC--HHHH---HHHHHHHHccHHHHHHHHHH
Confidence 344677788887776554 23456666554444555655544 23342 1111 12223367899887766554
Q ss_pred h
Q 000759 420 S 420 (1299)
Q Consensus 420 N 420 (1299)
+
T Consensus 490 s 490 (537)
T COG1292 490 S 490 (537)
T ss_pred H
Confidence 4
No 84
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=89.78 E-value=13 Score=46.89 Aligned_cols=113 Identities=11% Similarity=0.184 Sum_probs=66.7
Q ss_pred hhcccCChHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHH----hhhhheecCCcHHHHHHhhcCcchhhHHHHHHHHHH
Q 000759 30 IGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYL----SARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSV 105 (1299)
Q Consensus 30 IAyIDPGNIaTdlqAGA~fGY~LLWVLLLAtIl~~llQeL----AARLGVVTGK~LAEicRe~Ypk~~~~~LwI~aeLAI 105 (1299)
+.++..+++..-...|+.||.+.+|+-+-+.+...+.-.. --|.++. +.-|-.+.+|++..+. +|.+..+-.
T Consensus 58 aS~~s~~~~~gl~~e~~~~G~~~~~~~~~~l~~~~~~~~~f~Pvf~~~~v~---~~~eYl~~Rf~~~~r~-l~~l~f~l~ 133 (585)
T KOG2349|consen 58 ASNISSVHFLGLPGEGYAYGIQYWFFEWNALLSVLLLGWIFIPVFYRLGVT---TMYEYLEKRFGGRVRY-LATLSFILM 133 (585)
T ss_pred hhhhcceeeecCchHHHHHHHHHHHHHHHHHHHHHhhheEEEEEEEecCee---ehhHHHHHHhcccchh-hHHHHHHHH
Confidence 5677888888888889999998877665554444433322 2344554 3567777788877443 333332222
Q ss_pred HHHHHHHHH-HHHHHHHHhhCChhHHHHHHHHHHHHHHHhhc
Q 000759 106 ILLDLTMVL-GIAHGLNLLMGVELSTCVFLAAADAILFPFFA 146 (1299)
Q Consensus 106 IasDIaEVI-GtAIALNLLFGIPL~iGVLITavdt~lLL~lg 146 (1299)
+..-+..++ --|+++|-.+|+.++..++++.+.|.+.-.++
T Consensus 134 ~~~~l~v~~y~pal~~~qvtg~~~~l~~~~~~~ic~~YT~~G 175 (585)
T KOG2349|consen 134 IFLYLPVDMYAPALAINQVTGINLYLIVVILGLICVFYTALG 175 (585)
T ss_pred HHhheeeeEeehHHHHHHHhccCceeehHHHHHHHHHHHHhc
Confidence 222222211 34778888888877766665555555444443
No 85
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=89.65 E-value=17 Score=44.87 Aligned_cols=27 Identities=15% Similarity=0.148 Sum_probs=19.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhH
Q 000759 326 SPVVPFAFVLVLFFSNQIIAVNWNLSG 352 (1299)
Q Consensus 326 G~~A~~IFAIGLLAAGqSSTITgT~AG 352 (1299)
|++-..+|-+.++.+|++|.+...-.-
T Consensus 344 ~~~~~~lFFl~l~~agl~S~i~~~E~i 370 (523)
T PF00209_consen 344 GRFWAILFFLMLFLAGLTSQISMLEVI 370 (523)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcChHHHHHHHHHHHHhhhcCCceece
Confidence 566667787888888888877655433
No 86
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=87.84 E-value=32 Score=42.53 Aligned_cols=17 Identities=18% Similarity=0.135 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHhcCC
Q 000759 445 MLGLKLIFMVEMIFGNS 461 (1299)
Q Consensus 445 Ii~LNI~fVv~~ifg~s 461 (1299)
++..-+-|+++++-.+.
T Consensus 231 i~Ygi~RF~iEflR~d~ 247 (460)
T PRK13108 231 AFYCAGRFCVELLRDDP 247 (460)
T ss_pred HHHHHHHHHhhhhccCc
Confidence 33344567777775543
No 87
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=86.79 E-value=89 Score=38.56 Aligned_cols=64 Identities=11% Similarity=0.114 Sum_probs=36.6
Q ss_pred HHhhhhCCCcC-----cchHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 000759 355 VLQDFLRLDIP-----GWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVAS 420 (1299)
Q Consensus 355 VmeGFLgl~~~-----~w~rrLitRlIAIIPALiVal~~G~~~~~qLLi~aQVI~SL~LPFaLIPLL~ftN 420 (1299)
++|...+.+.+ .-..|++.|...++++++++...-. ...++.+...+....+.+.+=+++++.-
T Consensus 330 ~~E~~~~~~~~~~~~~~~~~R~~~Rt~~v~~~~~vA~~~Pf--Fg~l~~lvGa~~~~p~t~ilP~~~yl~~ 398 (437)
T KOG1303|consen 330 VVEKLIGVKHPDFKKRSLVLRLLVRTFFVAVTTFVALSFPF--FGDLLSLVGAFLFWPLTFILPCLMYLLI 398 (437)
T ss_pred HHHHHhccCCccccccccceeeehhhHHHHHHHHHHHhccc--cHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555444 2225677888888888887764321 3345555556655556665555555543
No 88
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=86.77 E-value=1e+02 Score=39.14 Aligned_cols=112 Identities=11% Similarity=0.034 Sum_probs=61.2
Q ss_pred hhhHHhhhhhcccCChHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHhhhhheecCCcHHHHHHhhcCcchh----hHH
Q 000759 22 VLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTC----VFI 97 (1299)
Q Consensus 22 LGPGfLmSIAyIDPGNIaTdlqAGA~fGY~LLWVLLLAtIl~~llQeLAARLGVVTGK~LAEicRe~Ypk~~~----~~L 97 (1299)
+|.|++++.+. .+.+.=-+|+--+|.++=++++++ +.-+=||++-+= ++|- ....-.+..++-+. |..
T Consensus 60 IGTGLfvgsG~----~l~~aGP~g~li~y~i~G~~vy~v--m~sLGEma~~~P-~sGs-F~~ya~rfvdpa~GFa~gWnY 131 (541)
T COG0833 60 IGTGLFVGSGK----ALSQAGPAGLLIAYLIIGIMVYFV--MQSLGELAVFYP-VSGS-FSTYATRFVDPAFGFALGWNY 131 (541)
T ss_pred cccceeeecch----hhhccCcHHHHHHHHHHHHHHHHH--HHHHHHHHhhcC-CCCc-hhhhhhhhcCchHHHHHHHHH
Confidence 77888765542 122222467777887766666554 345568888888 7772 11111222233222 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh--CChhHHHHHHHHHHHHHHHhh
Q 000759 98 GVQTELSVILLDLTMVLGIAHGLNLLM--GVELSTCVFLAAADAILFPFF 145 (1299)
Q Consensus 98 wI~aeLAIIasDIaEVIGtAIALNLLF--GIPL~iGVLITavdt~lLL~l 145 (1299)
|+. -+..++ .|++.+++-++.-+ .+|.++++.+..+..+++=++
T Consensus 132 w~~-w~v~~~---~El~aa~~vi~yW~p~~v~~~~w~~iF~~~i~~iN~~ 177 (541)
T COG0833 132 WLN-WAVTLP---LELTAASLVIQYWFPDTVPPWIWIAIFLVLIFLLNLF 177 (541)
T ss_pred HHH-HHHHhh---HHHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHHh
Confidence 322 122223 35667777777665 348888887776655555444
No 89
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=84.64 E-value=1.3e+02 Score=38.39 Aligned_cols=53 Identities=21% Similarity=0.256 Sum_probs=38.1
Q ss_pred HhHHhhhh--HHHHHHHHHHHHHHHHHHHhhhhhee--cCCcHHHHHHhhcCcchhhH
Q 000759 43 EGGAHFGF--DLVALMLVFNFAAIFCQYLSARIAVV--TGKDLAQICGEEYDKWTCVF 96 (1299)
Q Consensus 43 qAGA~fGY--~LLWVLLLAtIl~~llQeLAARLGVV--TGK~LAEicRe~Ypk~~~~~ 96 (1299)
..+|+||| .+||+++ .++++-.+|.+-+=.--+ -||++.|+.+++.|+..+.+
T Consensus 75 vlAAq~G~Lp~~LWIl~-G~VfaGaVhD~~~L~~SvR~~G~Si~~ia~~~lG~~a~~~ 131 (575)
T COG1966 75 ALAAQYGWLPAFLWILL-GCVFAGAVHDYFSLMLSVRHGGKSIGEIAGKYLGRTAKVF 131 (575)
T ss_pred HHHHHhcCcHHHHHHHH-hhhhhhhhhhhhheeeeeccCCccHHHHHHHHhhhhHHHH
Confidence 45789996 6889765 455555666655444444 49999999999999977654
No 90
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=79.85 E-value=1.7e+02 Score=36.62 Aligned_cols=75 Identities=23% Similarity=0.217 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhhHHHHHhhhhCC---CcCcchHHHHHH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHhHHHH
Q 000759 338 FFSNQIIAVNWNLSGQVVLQDFLRL---DIPGWLHHATIR-IISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVI 413 (1299)
Q Consensus 338 LAAGqSSTITgT~AGQ~VmeGFLgl---~~~~w~rrLitR-lIAIIPALiVal~~G~~~~~qLLi~aQVI~SL~LPFaLI 413 (1299)
+...+...+|...++.+++..+-.. +.+++. |+++- ++++++.++ ....|.+ ..|- +.....+|++++
T Consensus 399 lil~~~f~vTs~DS~~~~la~~s~~~~~ep~~~~-ri~W~~~~~~~a~~l-l~~ggl~-~lq~-----~~ii~~lP~~~v 470 (485)
T PF02028_consen 399 LILIFIFFVTSADSATYVLAMLSSKGDEEPPRWL-RIFWGLIIGALAIVL-LLIGGLD-ALQS-----ASIIGGLPFSFV 470 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTSSS-HHH-HHHHHHHHHHHHHHH-HHHHSSH-HHHH-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHcCCCCCCchHH-HHHHHHHHHHHHHHH-HHhCCHH-HHHH-----HHHHHHHHHHHH
Confidence 3333556677777777777665533 334444 44443 344444433 3345544 2332 222356788887
Q ss_pred HHHHHHh
Q 000759 414 PLFRVAS 420 (1299)
Q Consensus 414 PLL~ftN 420 (1299)
.++...+
T Consensus 471 ~~~~~~~ 477 (485)
T PF02028_consen 471 MLLMCIS 477 (485)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7665543
No 91
>PRK15015 carbon starvation protein A; Provisional
Probab=79.21 E-value=2.1e+02 Score=37.30 Aligned_cols=58 Identities=17% Similarity=0.150 Sum_probs=41.3
Q ss_pred hHHHHHHhHHhhhhH--HHHHHHHHHHHHHHHHHHhhhhhee--cCCcHHHHHHhhcCcchhhH
Q 000759 37 KWAVIIEGGAHFGFD--LVALMLVFNFAAIFCQYLSARIAVV--TGKDLAQICGEEYDKWTCVF 96 (1299)
Q Consensus 37 NIaTdlqAGA~fGY~--LLWVLLLAtIl~~llQeLAARLGVV--TGK~LAEicRe~Ypk~~~~~ 96 (1299)
-++--..| ++|||- +||+++- +++.-.+|.+.+=..-+ -||++.|++|++.|+..+.+
T Consensus 101 PivGPvlA-a~~GwlP~~LWIl~G-~vf~GaVhD~~~L~~S~R~~GrSig~ia~~~iG~~~~~l 162 (701)
T PRK15015 101 PLVGPVLA-AQMGYLPGMIWLLAG-VVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGPTAGVI 162 (701)
T ss_pred ccHHHHHH-HHHcchHHHHHHHHc-ceeechhhhhhheeeeecCCCccHHHHHHHHhhHHHHHH
Confidence 34444443 489994 8887654 45555678887776666 49999999999999876643
No 92
>PTZ00206 amino acid transporter; Provisional
Probab=77.05 E-value=1.9e+02 Score=35.59 Aligned_cols=31 Identities=10% Similarity=0.198 Sum_probs=19.1
Q ss_pred hhhheecC-CcHHHHHHhhcCcchhhHHHHHH
Q 000759 71 ARIAVVTG-KDLAQICGEEYDKWTCVFIGVQT 101 (1299)
Q Consensus 71 ARLGVVTG-K~LAEicRe~Ypk~~~~~LwI~a 101 (1299)
+|..-.++ ++..|+.+.-+|++..++.-+..
T Consensus 112 ~~~~~~~~~~sY~~la~~~~G~~g~~~v~~~~ 143 (467)
T PTZ00206 112 GVAADKTNIRTYEGVARVLLGPWGSYYVAATR 143 (467)
T ss_pred HHHhccCCCCCHHHHHHHHhCHHHHHHHHHHH
Confidence 34333343 47888888888987776653333
No 93
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=76.91 E-value=39 Score=40.36 Aligned_cols=82 Identities=21% Similarity=0.306 Sum_probs=55.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhCCCcCcchHHHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHH
Q 000759 326 SPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSG-AEGVYQLLIFTQVMV 404 (1299)
Q Consensus 326 G~~A~~IFAIGLLAAGqSSTITgT~AGQ~VmeGFLgl~~~~w~rrLitRlIAIIPALiVal~~G-~~~~~qLLi~aQVI~ 404 (1299)
|++.+.++=+.++...++++++..-++....++.+| .|.|.-.++. +..+.++.+.+ .+++.. ++
T Consensus 77 ~~~~~ki~d~~iif~lf~~~vVM~AGags~~~e~~~--lP~wiGali~-----i~~v~i~lfl~~vegi~t-------vn 142 (349)
T COG3949 77 GPKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFG--LPYWIGALII-----ILLVLILLFLGRVEGIIT-------VN 142 (349)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhC--ccHHHHHHHH-----HHHHHHHHHHhcccceee-------eh
Confidence 677788888899999999999888877778888877 5577653332 12222334455 555544 34
Q ss_pred HHHHhHHHHHHHHHHhc
Q 000759 405 AIMLPSSVIPLFRVASS 421 (1299)
Q Consensus 405 SL~LPFaLIPLL~ftNs 421 (1299)
++.+||.++.++..++.
T Consensus 143 ~iI~P~LIi~l~~v~~~ 159 (349)
T COG3949 143 GIITPFLIIILVLVTLS 159 (349)
T ss_pred eeHHHHHHHHHHHHHHH
Confidence 67889988887665543
No 94
>PLN00149 potassium transporter; Provisional
Probab=74.99 E-value=2.9e+02 Score=36.70 Aligned_cols=16 Identities=31% Similarity=0.385 Sum_probs=13.2
Q ss_pred ccHHHhhcccceeccc
Q 000759 743 ITQEARAKKLDLVLGV 758 (1299)
Q Consensus 743 ~t~~a~~~~~~~~lg~ 758 (1299)
.-++||.++.=.++|=
T Consensus 713 ~L~~A~eaGVvYIlG~ 728 (779)
T PLN00149 713 ELMEAREAGMAYILGH 728 (779)
T ss_pred HHHHHHHcCcEEEecC
Confidence 4688999999999983
No 95
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=72.61 E-value=2.6e+02 Score=34.96 Aligned_cols=76 Identities=22% Similarity=0.286 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhhHHHHHhhhhC--CC----cCcchHHHHH-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHhH
Q 000759 338 FFSNQIIAVNWNLSGQVVLQDFLR--LD----IPGWLHHATI-RIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPS 410 (1299)
Q Consensus 338 LAAGqSSTITgT~AGQ~VmeGFLg--l~----~~~w~rrLit-RlIAIIPALiVal~~G~~~~~qLLi~aQVI~SL~LPF 410 (1299)
+...+...+|..+++.+++..+.- .+ .++|. |+++ .++.+++..+ ++.|. ++..| =.+.....+||
T Consensus 363 ~il~~if~vTs~DS~s~vla~~~s~~g~~~~ep~~~~-ri~W~v~ig~~a~~l--l~~gG-~l~~l---Q~~~ii~alP~ 435 (453)
T TIGR00842 363 LIVIIIFFITSADSGALVLANTSSRGGQLGEEPPKWV-RVFWAVAIGLIALVL--LFSGG-SLAAL---QTTAIIAALPF 435 (453)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHhcCCCCCCCCCccc-chHHHHHHHHHHHHH--HHhcC-cHHHH---HHHHHHHHHHH
Confidence 334455677888888888876622 22 34454 4444 3344444433 23332 12211 12233467899
Q ss_pred HHHHHHHHHh
Q 000759 411 SVIPLFRVAS 420 (1299)
Q Consensus 411 aLIPLL~ftN 420 (1299)
.++.++...+
T Consensus 436 ~~i~~l~~~s 445 (453)
T TIGR00842 436 SLVMLVVMAS 445 (453)
T ss_pred HHHHHHHHHH
Confidence 8887776544
No 96
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=71.26 E-value=0.23 Score=57.28 Aligned_cols=21 Identities=5% Similarity=0.159 Sum_probs=15.7
Q ss_pred cCCcHHHHHHhhcCcchhhHH
Q 000759 77 TGKDLAQICGEEYDKWTCVFI 97 (1299)
Q Consensus 77 TGK~LAEicRe~Ypk~~~~~L 97 (1299)
...+..+++++-+|++.+++.
T Consensus 66 ~~~~y~~l~~~~~G~~~~~~~ 86 (409)
T PF01490_consen 66 GRRSYGDLARRAFGPKGKWFV 86 (409)
T ss_pred ccccccccccccccccccccc
Confidence 456688888888998776654
No 97
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=68.66 E-value=1.1e+02 Score=36.43 Aligned_cols=17 Identities=24% Similarity=0.259 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHhC
Q 000759 373 IRIISIVPALYCVWTSG 389 (1299)
Q Consensus 373 tRlIAIIPALiVal~~G 389 (1299)
.....++|.+.+..+..
T Consensus 131 ~~~~~~~pl~~~~~~~~ 147 (340)
T PF12794_consen 131 WLIWVLVPLLFISIFAE 147 (340)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 33456677777665554
No 98
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=67.68 E-value=4.2e+02 Score=35.49 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=17.0
Q ss_pred HHHHhcccchhHHHHHhHHhhh
Q 000759 210 IMSLLGASMMPHNFYLHSSIVR 231 (1299)
Q Consensus 210 aVALLGATIMPhNlYLHSaLVq 231 (1299)
..-++||++.|-.-.+.+++++
T Consensus 132 ~ALLLGAILAPTDPVLAssV~k 153 (810)
T TIGR00844 132 ASLLMGACITATDPVLAQSVVS 153 (810)
T ss_pred HHHHHHhhhcCCcHHHHHHHHh
Confidence 4557899999987777777775
No 99
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=66.89 E-value=3.5e+02 Score=34.28 Aligned_cols=73 Identities=14% Similarity=0.033 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhhHHHHHhhhhC------CCcCcchHHHHHH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHhHHH
Q 000759 340 SNQIIAVNWNLSGQVVLQDFLR------LDIPGWLHHATIR-IISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSV 412 (1299)
Q Consensus 340 AGqSSTITgT~AGQ~VmeGFLg------l~~~~w~rrLitR-lIAIIPALiVal~~G~~~~~qLLi~aQVI~SL~LPFaL 412 (1299)
..+...+|..+++.+++..+-- .+.++|. |+++- ++.+++..+ ++.|.-+..| .+.....+||.+
T Consensus 414 l~~if~vTsaDS~t~vla~~ts~g~~~~~~p~~~~-ri~W~v~ig~ia~~L--l~~GGl~~lQ-----t~sii~alPf~~ 485 (504)
T PRK03356 414 LCFIATVTLINACSYTLAMSTCREVRDGEEPPLLV-RIGWSILVGIIGIVL--LALGGLKPIQ-----TAIIAGGCPLFF 485 (504)
T ss_pred HHHHHHHhhhhHHHHHHHHHHcCCCCCCCCCCcch-hhHHHHHHHHHHHHH--HHhcCHHHHH-----HHHHHHHHHHHH
Confidence 3355667778888777766543 2344454 44443 344444432 2333211222 223346789988
Q ss_pred HHHHHHHh
Q 000759 413 IPLFRVAS 420 (1299)
Q Consensus 413 IPLL~ftN 420 (1299)
+.++...+
T Consensus 486 i~~l~~~s 493 (504)
T PRK03356 486 VNIMVTLS 493 (504)
T ss_pred HHHHHHHH
Confidence 88776655
No 100
>COG1294 AppB Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]
Probab=65.41 E-value=3.1e+02 Score=33.18 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=15.7
Q ss_pred cccccccCCChHHH---HHHHhcccchhH
Q 000759 196 NGMLTKFSGDSAFS---IMSLLGASMMPH 221 (1299)
Q Consensus 196 ~GLvP~lpg~sl~~---aVALLGATIMPh 221 (1299)
+-+=|.++++...+ ..|+++|=+.-|
T Consensus 53 nsigPvWD~NeVWLVl~ggalfaaFP~~y 81 (346)
T COG1294 53 NSIGPVWDGNEVWLVLAGGALFAAFPLAY 81 (346)
T ss_pred HccCCccccccchhHHHHHHHHHhhHHHH
Confidence 43447777765543 257777766655
No 101
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=63.81 E-value=3.8e+02 Score=33.59 Aligned_cols=70 Identities=7% Similarity=0.121 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccc-cCCCchHHHHHHHHHH
Q 000759 370 HATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASSRQIM-GVHKISQYHEFLVLIT 441 (1299)
Q Consensus 370 rLitRlIAIIPALiVal~~G~~~~~qLLi~aQVI~SL~LPFaLIPLL~ftNsr~IM-GefrNs~~~nILawli 441 (1299)
....|...++-+..+++. .+++..++-+..++....|-++.=|++.+.-..... |.++-.++.|++..++
T Consensus 363 ~~~~R~~lVllt~~iA~~--iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~ 433 (449)
T KOG1304|consen 363 EYALRVFLVLLTFLIAVA--VPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVF 433 (449)
T ss_pred HHHHHHHHHHHHHHHHHH--CCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHH
Confidence 345566666666655554 344566666666666666666666666554444433 5666667777544333
No 102
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=63.08 E-value=4.8e+02 Score=34.57 Aligned_cols=32 Identities=9% Similarity=0.122 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhh
Q 000759 329 VPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFL 360 (1299)
Q Consensus 329 A~~IFAIGLLAAGqSSTITgT~AGQ~VmeGFL 360 (1299)
-+++..+|+++++++|+|.+.+++..+++..-
T Consensus 371 ~p~fi~iGi~sttlfss~s~liGasrvL~ala 402 (945)
T KOG1288|consen 371 HPPFILIGILSTTLFSSMSGLIGASRVLEALA 402 (945)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 45677899999999999999999988887653
No 103
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=61.65 E-value=70 Score=35.37 Aligned_cols=54 Identities=13% Similarity=0.172 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccccCC-CchHHHHHHHHHHHHHHHHH
Q 000759 392 GVYQLLIFTQVMVAIMLPSSVIPLFRVASSRQIMGVH-KISQYHEFLVLITFMGMLGL 448 (1299)
Q Consensus 392 ~~~qLLi~aQVI~SL~LPFaLIPLL~ftNsr~IMGef-rNs~~~nILawli~llIi~L 448 (1299)
+++.++.+ ++.+++|||-.+-+.+ +-.=++|..- .+...+-+++.+..++.+.+
T Consensus 79 p~ialimi--~iAs~llP~PsLVIaY-Cl~mqi~~~~~~~~~gMsIvcv~~Si~ti~~ 133 (189)
T PF05313_consen 79 PLIALIMI--IIASLLLPFPSLVIAY-CLSMQIYNPGANNNVGMSIVCVIMSIITIIV 133 (189)
T ss_pred cHHHHHHH--HHHHHHcCccHHHHHH-HHHheeecCCCcceehhHHHHHHHHHHHHHH
Confidence 34444433 5678999996655444 3334455433 33344455554444444433
No 104
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=59.57 E-value=4.6e+02 Score=33.11 Aligned_cols=40 Identities=15% Similarity=-0.082 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Q 000759 95 VFIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLA 135 (1299)
Q Consensus 95 ~~LwI~aeLAIIasDIaEVIGtAIALNLLFGIPL~iGVLIT 135 (1299)
..+|+.-.++.++.-++.+.-.-.... +.+=|.+.+.+.+
T Consensus 13 r~lw~a~~iS~lG~~~~~va~~wlv~~-lt~S~~~valv~~ 52 (524)
T PF05977_consen 13 RRLWIAQLISNLGDWMQTVALAWLVTQ-LTGSPLMVALVQA 52 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHH
Confidence 357777777777777764432222222 2344777666543
No 105
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=57.59 E-value=2e+02 Score=37.31 Aligned_cols=99 Identities=13% Similarity=0.103 Sum_probs=46.0
Q ss_pred hhCChhH-----HHHHHHHHHHHHHHhhcCcchhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhHhhhCCCccccccc
Q 000759 123 LMGVELS-----TCVFLAAADAILFPFFAGQLFIDELIMLNFQENYKAKLLWICTAGIILLSYVLGVLISQPEIPLSVNG 197 (1299)
Q Consensus 123 LFGIPL~-----iGVLITavdt~lLL~lgs~~~~d~~~~~~y~G~RKlE~l~~~LI~IM~L~FVv~afis~Pd~geVl~G 197 (1299)
+||+|.. ..|+-..+.++++-++.+ |+++ +--..++.++.-+ ..++++..+.+++..|=..-+-.+
T Consensus 205 ~fGipv~~~~Y~~sViPiil~v~~~s~iEk--~l~K------~iP~~l~~i~~P~-ltlli~~pl~l~viGPig~~i~~~ 275 (627)
T PRK09824 205 FLGIPVTLLNYSSSVIPIIFSAWLCSILER--RLNA------WLPSAIKNFFTPL-LCLMVIVPLTFLLIGPLATWLSEL 275 (627)
T ss_pred ecceeeeecCCccchHHHHHHHHHHHHHHH--HHHH------HHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3576543 235555555666666654 2221 1111233443333 245555666667777754433333
Q ss_pred cc---cccCCChHHHHHHHhcccchhHHHH-HhHHhh
Q 000759 198 ML---TKFSGDSAFSIMSLLGASMMPHNFY-LHSSIV 230 (1299)
Q Consensus 198 Lv---P~lpg~sl~~aVALLGATIMPhNlY-LHSaLV 230 (1299)
+- -.+-.-.-.++.+++|+.--|--++ +|-+++
T Consensus 276 l~~~i~~l~~~~~~i~g~i~g~~~~~lV~~G~H~~l~ 312 (627)
T PRK09824 276 LAAGYQWLYQAVPAFAGAVMGAFWQVFVIFGLHWGLV 312 (627)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHHhccchhhH
Confidence 31 1111112234556777765554444 666654
No 106
>PRK09950 putative transporter; Provisional
Probab=43.64 E-value=8e+02 Score=31.25 Aligned_cols=76 Identities=18% Similarity=0.117 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhhHHHHHhhhhCC------CcCcchHHHHH-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHhH
Q 000759 338 FFSNQIIAVNWNLSGQVVLQDFLRL------DIPGWLHHATI-RIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPS 410 (1299)
Q Consensus 338 LAAGqSSTITgT~AGQ~VmeGFLgl------~~~~w~rrLit-RlIAIIPALiVal~~G~~~~~qLLi~aQVI~SL~LPF 410 (1299)
+...+...+|..+++.+++..+-.. +.++|. |+++ .++.+++..+ ++.|. ++..+ =.+.....+||
T Consensus 409 ~vl~~if~vTs~DS~s~vla~~ts~g~~~~~~P~~~~-ri~W~i~~g~ia~~L--l~~gG-~l~~l---Q~~~ii~alP~ 481 (506)
T PRK09950 409 LGIMIIFLASHMDAVAYTMAATSTRNLREGDDPDRGL-RLFWCVVITLIPLSI--LFTGA-SLDTM---KTTVVLTALPF 481 (506)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCCCCcch-hHHHHHHHHHHHHHH--HHhCC-cHHHH---HHHHHHHHHHH
Confidence 3334556777888888888765432 344454 4444 3344444433 23332 12211 12233466888
Q ss_pred HHHHHHHHHh
Q 000759 411 SVIPLFRVAS 420 (1299)
Q Consensus 411 aLIPLL~ftN 420 (1299)
.++.++...+
T Consensus 482 ~~i~~l~~~s 491 (506)
T PRK09950 482 LVILLIKVYG 491 (506)
T ss_pred HHHHHHHHHH
Confidence 8877766544
No 107
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=42.62 E-value=98 Score=33.14 Aligned_cols=10 Identities=30% Similarity=0.484 Sum_probs=5.8
Q ss_pred HHHHHhhCCh
Q 000759 118 HGLNLLMGVE 127 (1299)
Q Consensus 118 IALNLLFGIP 127 (1299)
.++.++||-.
T Consensus 115 ~~fa~lfgg~ 124 (193)
T PF06738_consen 115 AAFALLFGGS 124 (193)
T ss_pred HHHHHHHCCC
Confidence 3455577754
No 108
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=39.56 E-value=4.8e+02 Score=28.79 Aligned_cols=29 Identities=10% Similarity=0.235 Sum_probs=12.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000759 428 HKISQYHEFLVLITFMGMLGLKLIFMVEMI 457 (1299)
Q Consensus 428 frNs~~~nILawli~llIi~LNI~fVv~~i 457 (1299)
.|.+.|..++. .+.++++.+.++.+..++
T Consensus 142 ~r~~~~k~~~~-~~~~~~~w~~~~~~~~~l 170 (206)
T PF06570_consen 142 KRPSWWKYILI-SVLAMVLWIVIFVLTSFL 170 (206)
T ss_pred cccHHHHHHHH-HHHHHHHHHHHHHHHHHc
Confidence 44444544433 333333434444444443
No 109
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=38.54 E-value=1.9e+02 Score=33.36 Aligned_cols=29 Identities=7% Similarity=-0.002 Sum_probs=16.9
Q ss_pred HHHHHHHHhhCChhHHHHHHHHHHHHHHH
Q 000759 115 GIAHGLNLLMGVELSTCVFLAAADAILFP 143 (1299)
Q Consensus 115 GtAIALNLLFGIPL~iGVLITavdt~lLL 143 (1299)
+++.++...|+.|.|+.+++.++-.++++
T Consensus 32 s~~~a~~~~~~~~~~~ai~~glvwgl~I~ 60 (301)
T PF14362_consen 32 SGGYALYTVFGGPVWAAIPFGLVWGLVIF 60 (301)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 44555566677777776666654444443
No 110
>KOG2348 consensus Urea transporter [Amino acid transport and metabolism]
Probab=38.39 E-value=1.2e+02 Score=38.05 Aligned_cols=99 Identities=8% Similarity=0.100 Sum_probs=46.1
Q ss_pred ccCChHHHHHHhHHhhhh-HHHHHHHHHHHHHHHHHHHhhhhhee--cCCcHHHHHHhhcCcchhh-HHHHHHHHHHHHH
Q 000759 33 VDPGKWAVIIEGGAHFGF-DLVALMLVFNFAAIFCQYLSARIAVV--TGKDLAQICGEEYDKWTCV-FIGVQTELSVILL 108 (1299)
Q Consensus 33 IDPGNIaTdlqAGA~fGY-~LLWVLLLAtIl~~llQeLAARLGVV--TGK~LAEicRe~Ypk~~~~-~LwI~aeLAIIas 108 (1299)
.=|+.+.|+.+---+||- .-.|----+|+=-+++-.+|..+--+ .-++..|+.|.+||+..-. +|......-++.+
T Consensus 67 tW~sTlLtSa~~ayqyGV~G~~wYasga~vQIl~FtVlAie~Kr~APnAHT~~EiVkaR~G~~~H~vfL~yal~TNIlVt 146 (667)
T KOG2348|consen 67 TWASTLLTSAGKAYQYGVSGSFWYASGATVQILLFTVLAIEVKRKAPNAHTILEIVKARFGQASHGVFLFYALATNILVT 146 (667)
T ss_pred hhhHHHHhhccchhhhcccchhhhhccchhhhHHHHHHHHhhhhcCCCcchhhhhhHhhcCcccceEEEhhhhhhhHHHH
Confidence 445556665554444442 23444333333333333333333222 4567999999999984422 2211111122222
Q ss_pred HHHHHHHHHHHHHHhhCChhHHHH
Q 000759 109 DLTMVLGIAHGLNLLMGVELSTCV 132 (1299)
Q Consensus 109 DIaEVIGtAIALNLLFGIPL~iGV 132 (1299)
.|- +.|....++-+.|......+
T Consensus 147 aML-L~gGSavisalTGmn~vAa~ 169 (667)
T KOG2348|consen 147 AML-LLGGSAVISALTGMNTVAAC 169 (667)
T ss_pred HHH-HhCchhhhhhhccchhhhhh
Confidence 221 23444455666666554443
No 111
>TIGR03732 lanti_perm_MutE lantibiotic protection ABC transporter permease subunit, MutE/EpiE family. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene, modeled separately.
Probab=38.24 E-value=3e+02 Score=30.93 Aligned_cols=61 Identities=11% Similarity=0.133 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccc-cCCC
Q 000759 369 HHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASSRQIM-GVHK 429 (1299)
Q Consensus 369 rrLitRlIAIIPALiVal~~G~~~~~qLLi~aQVI~SL~LPFaLIPLL~ftNsr~IM-Gefr 429 (1299)
|..+..++.++|.+.+++..-...-+.....-|.-..+.+|..+.-+-.+..+++-. |.|+
T Consensus 12 rt~i~~l~~i~Pl~~~~l~~~~~~~y~~~~~~n~w~~~~lP~~iaii~~~~~~~E~~~~~~k 73 (241)
T TIGR03732 12 RTFSKKLIWIAPIIFLLLAFLLSPSYFQYATFNWWYVIFLPGMIALICALLHKKEKKASNYR 73 (241)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 333444555667665544210000011111223344568898887776666444443 5554
No 112
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=38.14 E-value=1.1e+03 Score=31.06 Aligned_cols=72 Identities=18% Similarity=0.268 Sum_probs=49.9
Q ss_pred HHHHhhhhhHHhhhhhc-ccCChHH-----HHHHhHHhhhhHHHHHHHHHHHHHHHHHHHhhhhheecCCcHHHHHHhhc
Q 000759 16 YRLVPAVLPVLLISIGY-VDPGKWA-----VIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEY 89 (1299)
Q Consensus 16 rkLLa~LGPGfLmSIAy-IDPGNIa-----TdlqAGA~fGY~LLWVLLLAtIl~~llQeLAARLGVVTGK~LAEicRe~Y 89 (1299)
|.-|+--.=.+|-++++ +|-||+- .+-..|..| |+--+++..+.++++..|=.-+|-.|+++-....|+--
T Consensus 34 R~~w~~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaF---LIpY~i~l~l~GlP~~~LE~slGQf~~~g~v~~wrri~ 110 (629)
T KOG3660|consen 34 RGNWKSKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAF---LIPYLIVLFLFGLPLFFLEMSLGQFTSQGPVSVWRRIC 110 (629)
T ss_pred cccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchH---HHHHHHHHHHhcchHHHHHHHHhhhhcCChHHHHHHhC
Confidence 33444333445666775 8999987 333344344 44455667778888888888899999999999998655
Q ss_pred C
Q 000759 90 D 90 (1299)
Q Consensus 90 p 90 (1299)
|
T Consensus 111 P 111 (629)
T KOG3660|consen 111 P 111 (629)
T ss_pred h
Confidence 5
No 113
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=38.09 E-value=3.6e+02 Score=34.38 Aligned_cols=47 Identities=15% Similarity=0.256 Sum_probs=26.2
Q ss_pred HHHHHhHHHHHHHHHHhccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000759 404 VAIMLPSSVIPLFRVASSRQIMGVHKISQYHEFLVLITFMGMLGLKLIFMVEM 456 (1299)
Q Consensus 404 ~SL~LPFaLIPLL~ftNsr~IMGefrNs~~~nILawli~llIi~LNI~fVv~~ 456 (1299)
.++.+|+.++-++. ..++ -+.++|++.+=.+..++++++.++++...
T Consensus 336 LG~~~Plll~~~~~----~~~l--pk~g~wm~~~k~~~G~~ll~~~~~ll~~~ 382 (571)
T PRK00293 336 LGMGLPLILITTFG----NKLL--PKSGPWMNQVKTAFGFVLLALPVFLLERV 382 (571)
T ss_pred HHHHHHHHHHHHHH----Hhhc--ccCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666555432 1222 25566766666666666666677666543
No 114
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=37.91 E-value=5.1e+02 Score=32.36 Aligned_cols=63 Identities=8% Similarity=0.125 Sum_probs=48.2
Q ss_pred HHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHH
Q 000759 81 LAQICGEEYDKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFP 143 (1299)
Q Consensus 81 LAEicRe~Ypk~~~~~LwI~aeLAIIasDIaEVIGtAIALNLLFGIPL~iGVLITavdt~lLL 143 (1299)
+...+...+|++..+++.+.+.+|++.+-++.+.+.|-=++-++.++-...++++.+.++++-
T Consensus 267 l~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~isY~~~v~i~~l~S~~lS 329 (439)
T PRK15433 267 LHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVPLSYRTLVFILGGFSMVVS 329 (439)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHH
Confidence 555677788988888888888999999998888888877777767776666666666555554
No 115
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=36.91 E-value=3.1e+02 Score=30.52 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=17.9
Q ss_pred CChhHHHHHHHHHHHHHHHhhcC
Q 000759 125 GVELSTCVFLAAADAILFPFFAG 147 (1299)
Q Consensus 125 GIPL~iGVLITavdt~lLL~lgs 147 (1299)
|.+.+..+++.++.++++.+.+-
T Consensus 153 g~~~~~~~~~igivs~i~~~~G~ 175 (206)
T TIGR02840 153 GLNPLATSILVAVMSFIFVSLGL 175 (206)
T ss_pred CccHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888888888887764
No 116
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=36.80 E-value=5.7e+02 Score=29.63 Aligned_cols=51 Identities=12% Similarity=0.031 Sum_probs=31.3
Q ss_pred HhHHHHHHHHHHhcc-ccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000759 408 LPSSVIPLFRVASSR-QIMGVHKISQYHEFLVLITFMGMLGLKLIFMVEMIF 458 (1299)
Q Consensus 408 LPFaLIPLL~ftNsr-~IMGefrNs~~~nILawli~llIi~LNI~fVv~~if 458 (1299)
.-++.+..+++++++ +---.|-.+++..+.+.+..++++++.++.+++.+.
T Consensus 52 ~~~l~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~~~~esi~ 103 (299)
T PRK09509 52 ASLTNLLVVRYSLQPADDEHTFGHGKAESLAALAQSMFISGSALFLFLTGIQ 103 (299)
T ss_pred HHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455555432 222345566777888887877777777777777664
No 117
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=36.69 E-value=9.1e+02 Score=29.87 Aligned_cols=52 Identities=12% Similarity=0.162 Sum_probs=33.8
Q ss_pred HHHHhHHhhhhHHHHHHHHHHHHHHHHHHHhhhhheecCCcHHHHHHhhcCcch
Q 000759 40 VIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWT 93 (1299)
Q Consensus 40 TdlqAGA~fGY~LLWVLLLAtIl~~llQeLAARLGVVTGK~LAEicRe~Ypk~~ 93 (1299)
+-.++|-.+|.-++-...+.+...+.++.-++..+-.. +.++.++..+|+..
T Consensus 30 afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~~--ty~~l~~~~~g~~g 81 (411)
T KOG1305|consen 30 AFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGER--TYSSLGDLIFGKLG 81 (411)
T ss_pred HHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCC--CHHHHHHHHcCCCc
Confidence 34566766676666666666666666665555544444 77777777788755
No 118
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=36.56 E-value=1e+03 Score=30.50 Aligned_cols=41 Identities=22% Similarity=0.343 Sum_probs=27.5
Q ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000759 379 VPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVA 419 (1299)
Q Consensus 379 IPALiVal~~G~~~~~qLLi~aQVI~SL~LPFaLIPLL~ft 419 (1299)
+|...+.-..|.++...+.+++|++.++.+|...+..+.+.
T Consensus 400 ~~~~~~~g~t~~~P~~~~~~~sqli~g~~~pg~~~a~l~~~ 440 (624)
T PF03169_consen 400 IPSGRITGETGINPVSGLNILSQLIFGLLLPGNPIANLLFG 440 (624)
T ss_pred HHHHHHhhhcCCCcchhhhHHHHHHHHHHHhccHHHHHHHH
Confidence 33333333445544568889999999999998776666554
No 119
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=36.39 E-value=7.3e+02 Score=28.76 Aligned_cols=17 Identities=18% Similarity=0.126 Sum_probs=10.2
Q ss_pred hhHHHHHHHHHHHHHHH
Q 000759 161 ENYKAKLLWICTAGIIL 177 (1299)
Q Consensus 161 G~RKlE~l~~~LI~IM~ 177 (1299)
|..|+|.+..++.++++
T Consensus 74 G~~r~E~l~~l~~~~~l 90 (299)
T PRK09509 74 GHGKAESLAALAQSMFI 90 (299)
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 44678877665554433
No 120
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=36.31 E-value=8.6e+02 Score=33.82 Aligned_cols=50 Identities=12% Similarity=0.119 Sum_probs=28.1
Q ss_pred HHHHHhHHHHHHHHHHhccccccCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 000759 404 VAIMLPSSVIPLFRVASSRQIMGVHKISQYHEFLVLITFMGMLGLKLIFMV 454 (1299)
Q Consensus 404 ~SL~LPFaLIPLL~ftNsr~IMGefrNs~~~nILawli~llIi~LNI~fVv 454 (1299)
..+.+|.+++.+++++ .+.---.-+.+.+.+.+.|++.++++.+.+.++.
T Consensus 115 ~~a~~~~~~~~~L~~~-R~~F~~~~~~~s~~~~~~~l~~~~~~~~~~~~~l 164 (1094)
T PRK02983 115 IGFAVHVVAIVLLVLA-RREFPARVRRGALRKALAVLVGGLAVGILVGWGL 164 (1094)
T ss_pred HHHHHHHHHHHHHHHH-HhhccCCCCcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666666554 3433222234666777778777777755444443
No 121
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=35.08 E-value=2.6e+02 Score=35.13 Aligned_cols=13 Identities=15% Similarity=0.325 Sum_probs=8.6
Q ss_pred cCCCCCCcccccc
Q 000759 507 RNNAPDWSWEFQR 519 (1299)
Q Consensus 507 ~~~~~~~~~~~~~ 519 (1299)
..|...|-|.+=.
T Consensus 482 ~~Edy~WwWrSF~ 494 (521)
T PF02990_consen 482 CAEDYRWWWRSFL 494 (521)
T ss_pred hccccceeeeeeh
Confidence 3566888887643
No 122
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=34.82 E-value=1.4e+03 Score=31.91 Aligned_cols=13 Identities=31% Similarity=0.258 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHh
Q 000759 376 ISIVPALYCVWTS 388 (1299)
Q Consensus 376 IAIIPALiVal~~ 388 (1299)
..++|.+.+..++
T Consensus 607 ~~~~pl~~~~~~~ 619 (1109)
T PRK10929 607 GLIVPLIMALITF 619 (1109)
T ss_pred HHHHHHHHHHHHH
Confidence 4566776654444
No 123
>PRK10263 DNA translocase FtsK; Provisional
Probab=34.23 E-value=1.5e+02 Score=41.32 Aligned_cols=10 Identities=30% Similarity=0.298 Sum_probs=5.0
Q ss_pred hhCChhHHHH
Q 000759 123 LMGVELSTCV 132 (1299)
Q Consensus 123 LFGIPL~iGV 132 (1299)
+||+..|+..
T Consensus 78 LFGl~AYLLP 87 (1355)
T PRK10263 78 IFGVMAYTIP 87 (1355)
T ss_pred HHhHHHHHHH
Confidence 5566444443
No 124
>PRK03612 spermidine synthase; Provisional
Probab=33.51 E-value=6.5e+02 Score=31.74 Aligned_cols=47 Identities=9% Similarity=0.094 Sum_probs=29.3
Q ss_pred HHHhHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhee-cCCcHHHHHHh
Q 000759 41 IIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVV-TGKDLAQICGE 87 (1299)
Q Consensus 41 dlqAGA~fGY~LLWVLLLAtIl~~llQeLAARLGVV-TGK~LAEicRe 87 (1299)
.+.+.+..+|.++|.=+++.+++--+...+.=|++. .|.++.-.+-.
T Consensus 24 f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~ 71 (521)
T PRK03612 24 FVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSK 71 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778889999998888866665555444444443 44444444433
No 125
>TIGR02854 spore_II_GA sigma-E processing peptidase SpoIIGA. Members of this protein family are the stage II sporulation protein SpoIIGA. This protein acts as an activating protease for Sigma-E, one of several specialized sigma factors of the sporulation process in Bacillus subtilis and related endospore-forming bacteria.
Probab=32.32 E-value=3.8e+02 Score=31.28 Aligned_cols=15 Identities=13% Similarity=0.087 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHhhCC
Q 000759 112 MVLGIAHGLNLLMGV 126 (1299)
Q Consensus 112 EVIGtAIALNLLFGI 126 (1299)
.++|++.++-++++.
T Consensus 40 a~iGa~~~~~~~~p~ 54 (288)
T TIGR02854 40 ALIGSLYVLFMFTPK 54 (288)
T ss_pred HHHHHHHHHHHHhcc
Confidence 345666666555543
No 126
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=32.30 E-value=1.2e+03 Score=30.03 Aligned_cols=93 Identities=13% Similarity=0.056 Sum_probs=43.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhCCCcCcchHHHHHHHHHHHHHHHHHHHhCchh--HHHHHHHHHHHH
Q 000759 327 PVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSGAEG--VYQLLIFTQVMV 404 (1299)
Q Consensus 327 ~~A~~IFAIGLLAAGqSSTITgT~AGQ~VmeGFLgl~~~~w~rrLitRlIAIIPALiVal~~G~~~--~~qLLi~aQVI~ 404 (1299)
++..++++..+=+..|||+-+..+--.+..+|.+..+...- ..+-.-+...+|+++.++-.+... ..--..+.+++.
T Consensus 174 ~~~~l~~g~~lt~l~~SS~A~i~i~~~l~~~glis~~~~~a-lvLGaNlGt~i~a~laa~~~~~~arr~a~~~ll~~~iG 252 (533)
T COG1283 174 PIVALLIGALLTALIQSSLAAIGILLSLTSQGLISLEAALA-LVLGANLGTTITAVLAALGASAAARRVALGNLLFNLIG 252 (533)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchhHHHH-HHHHHhhhchhHHHHHhcccchhHHHHHHHHHHHHHHh
Confidence 44445566666666677766655555555566554332111 111111222344444332111110 112244556666
Q ss_pred HHHHhHHHHHHHHHHh
Q 000759 405 AIMLPSSVIPLFRVAS 420 (1299)
Q Consensus 405 SL~LPFaLIPLL~ftN 420 (1299)
.++.+..+-|+..+.+
T Consensus 253 ~li~lp~~~~~~~~~~ 268 (533)
T COG1283 253 VLIFLPVIHLLATFAS 268 (533)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 6666666666666655
No 127
>PF03784 Cyclotide: Cyclotide family; InterPro: IPR005535 Cyclotides (cyclo peptides) are plant peptides of ~30 amino acids with a head to-tail cyclic backbone and six cysteine residues involved in three disulphide bonds. The cyclotides are extremely resistant to proteolysis and are remarkably stable. Cyclotides display a diverse range of biological activities, including uterotonic activity, inhibition of neurotensin binding, hemolytic, anti-HIV and anti-microbial activity. This range of biological activities makes cyclotides amenable to potential pharmaceutical and agricultural applications. Although their precise role in plants has not yet been reported, it appears that they are most likely present as defence molecules [, , , ]. The three-dimensional structure of cyclotides is compact and contains a number of beta-turns, three beta strands arranged in a distorted triple-stranded beta-sheet, a short helical segment, and a network of disulphide bonds which form a cystine knot. The cystine knot consists of an embedded ring in the structure, formed by two disulphide bonds and their connecting backbone segments is threaded by a third disulphide bond. Although the cystine knot motif is now well known in a wide variety of proteins, the cyclotides remain as the only example in which a cystine knot is embedded within a circular protein backbone, a motif that is referred to as the cyclic cystine knot (CCK) [, , , ]. Cyclotides can be separated into two sub-families, one of which tends to contain a larger number of positively charged residues and has a bracelet-like circularisation of the backbone. The second subfamily contains a backbone twist due to a cis-Pro peptide bond and may conceptually be regarded as a molecular Moebius strip [, ]. Bracelet and Moebius families of cyclotides possess a Knottin scaffold. The cyclotide family of proteins is abundant in plants from the Rubiaceae and Violaceae families and includes: Kalata B1. Circulins. Cyclopsychotride A. Cycloviolacin O1. ; GO: 0006952 defense response; PDB: 2ERI_A 2KHB_A 1K48_A 1ZNU_A 1N1U_A 2F2J_A 1ORX_A 1NB1_A 1KAL_A 2F2I_A ....
Probab=31.94 E-value=8.5 Score=31.02 Aligned_cols=11 Identities=36% Similarity=1.352 Sum_probs=9.0
Q ss_pred CCcCCCCceecc
Q 000759 1247 VPHCGDGCIWKV 1258 (1299)
Q Consensus 1247 ~p~cg~~cvw~~ 1258 (1299)
+| |||.|||--
T Consensus 2 ip-CGEtCv~~p 12 (30)
T PF03784_consen 2 IP-CGETCVFIP 12 (30)
T ss_dssp EE-EEEETSSSS
T ss_pred CC-cccceeeee
Confidence 56 999999953
No 128
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=31.73 E-value=8.1e+02 Score=27.81 Aligned_cols=80 Identities=14% Similarity=0.159 Sum_probs=38.3
Q ss_pred HHHHhHHHHHHHHHHhccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCccchhHHHHHH
Q 000759 405 AIMLPSSVIPLFRVASSRQIMGVHKISQYHEFLVLITFMGMLGLKLIFMVEMIFGNSDWVGNLRWNSGGTVALPFAVFLI 484 (1299)
Q Consensus 405 SL~LPFaLIPLL~ftNsr~IMGefrNs~~~nILawli~llIi~LNI~fVv~~ifg~s~w~~~l~~~~~~~~~~~~~vl~i 484 (1299)
++.--|+...+.++..+..--...|.+.|.-+++. ....++.+.++++ +.+.+. .-++.++-+.+.+
T Consensus 134 a~vgGfamy~my~y~yr~~ad~sqr~~~~K~~lv~-~~sm~lWi~v~i~-t~~lPt-----------slN~~L~pi~l~I 200 (226)
T COG4858 134 AVVGGFAMYIMYYYAYRMRADNSQRPGTWKYLLVA-VLSMLLWIAVMIA-TVFLPT-----------SLNPQLPPIALTI 200 (226)
T ss_pred HHhhhHHHHHHHHHHHHhhcccccCCchHHHHHHH-HHHHHHHHHHHHH-HhhCCC-----------cCCcCCchHHHHH
Confidence 34444455556666554332223555555544444 4344444555533 333221 1122344445556
Q ss_pred HHHHHHHHHHHHH
Q 000759 485 TTFTSLCLMLWLA 497 (1299)
Q Consensus 485 ~~~~yl~f~lyL~ 497 (1299)
+..+.+++=.||=
T Consensus 201 iGav~lalRfylk 213 (226)
T COG4858 201 IGAVILALRFYLK 213 (226)
T ss_pred HHHHHHHHHHHHH
Confidence 6667777777763
No 129
>COG2966 Uncharacterized conserved protein [Function unknown]
Probab=31.65 E-value=2.2e+02 Score=32.77 Aligned_cols=28 Identities=21% Similarity=0.141 Sum_probs=13.9
Q ss_pred HHHHHHhhCChhHHHHHHHHHHHHHHHhh
Q 000759 117 AHGLNLLMGVELSTCVFLAAADAILFPFF 145 (1299)
Q Consensus 117 AIALNLLFGIPL~iGVLITavdt~lLL~l 145 (1299)
+.++.+||| --|.-++++++..++...+
T Consensus 136 ~~~f~~l~g-G~w~d~~iaf~~~~~~~~~ 163 (250)
T COG2966 136 AAAFALLFG-GGWLDFLIAFFAGLLGFLL 163 (250)
T ss_pred HHHHHHHcC-CchHHHHHHHHHHHHHHHH
Confidence 344556777 3344444555544444433
No 130
>PLN00151 potassium transporter; Provisional
Probab=31.44 E-value=1.5e+03 Score=30.82 Aligned_cols=31 Identities=10% Similarity=-0.051 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHH--HHHHHHhhH--HHHHhhhh
Q 000759 330 PFAFVLVLFFSNQI--IAVNWNLSG--QVVLQDFL 360 (1299)
Q Consensus 330 ~~IFAIGLLAAGqS--STITgT~AG--Q~VmeGFL 360 (1299)
..+|.++.+||-.. +.|+++++- |.+--|+|
T Consensus 419 wP~~vlAtlAaIIASQA~ISgtFSii~Qai~Lg~f 453 (852)
T PLN00151 419 WPVFLIANLAALIASRAMTTATFSCIKQSMALGCF 453 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 45666776666554 466777654 66666665
No 131
>PF06664 MIG-14_Wnt-bd: Wnt-binding factor required for Wnt secretion
Probab=31.40 E-value=8.8e+02 Score=28.13 Aligned_cols=24 Identities=8% Similarity=0.200 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHh
Q 000759 397 LIFTQVMVAIMLPSSVIPLFRVAS 420 (1299)
Q Consensus 397 Li~aQVI~SL~LPFaLIPLL~ftN 420 (1299)
..+..+.+++.+...+...+.+..
T Consensus 116 ~~l~~i~q~~F~~~Ll~FwL~~~~ 139 (298)
T PF06664_consen 116 LLLDDIFQSIFYAYLLLFWLVFFD 139 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667778777777777666654
No 132
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=31.02 E-value=2.2e+02 Score=31.93 Aligned_cols=18 Identities=28% Similarity=0.717 Sum_probs=14.8
Q ss_pred HHHHHhcccchhHHHHHh
Q 000759 209 SIMSLLGASMMPHNFYLH 226 (1299)
Q Consensus 209 ~aVALLGATIMPhNlYLH 226 (1299)
++..++|+++..--+|+.
T Consensus 196 i~l~IiGav~lalRfylk 213 (226)
T COG4858 196 IALTIIGAVILALRFYLK 213 (226)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 578899999988888875
No 133
>PF13722 DUF4161: C-terminal domain on CstA (DUF4161)
Probab=30.79 E-value=4.6e+02 Score=27.44 Aligned_cols=28 Identities=7% Similarity=0.034 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhhhC
Q 000759 334 VLVLFFSNQIIAVNWNLSGQVVLQDFLR 361 (1299)
Q Consensus 334 AIGLLAAGqSSTITgT~AGQ~VmeGFLg 361 (1299)
+++.-+-..+|.=|++-.++++++++++
T Consensus 12 ~l~v~~f~lTtlDTa~Rl~R~~~~E~~~ 39 (127)
T PF13722_consen 12 ILFVAAFALTTLDTATRLARYIIQELFG 39 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444466777899999999999999
No 134
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=30.16 E-value=1.1e+03 Score=29.47 Aligned_cols=63 Identities=13% Similarity=0.223 Sum_probs=43.0
Q ss_pred HHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-ChhHHHHHHHHHHHHHHH
Q 000759 81 LAQICGEEYDKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMG-VELSTCVFLAAADAILFP 143 (1299)
Q Consensus 81 LAEicRe~Ypk~~~~~LwI~aeLAIIasDIaEVIGtAIALNLLFG-IPL~iGVLITavdt~lLL 143 (1299)
|.+..+..+|+...+++.+.+.+|++.+-++=+...|--++-+++ ++-..++.++.+..+++-
T Consensus 263 L~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~kisY~~~v~i~~i~S~~ia 326 (427)
T PF05525_consen 263 LSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFPKISYKVWVIIFTIFSFIIA 326 (427)
T ss_pred HHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHH
Confidence 556666678887778888888888888877766666666666665 566666666655555443
No 135
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=29.43 E-value=6e+02 Score=31.91 Aligned_cols=99 Identities=13% Similarity=0.158 Sum_probs=51.3
Q ss_pred cCChHHHHHHhHH-----------hhhhHHHHHHHHHHHHHHHHHHHhhhhheecCCc--HHHHHHhhcCcchhhHHHHH
Q 000759 34 DPGKWAVIIEGGA-----------HFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKD--LAQICGEEYDKWTCVFIGVQ 100 (1299)
Q Consensus 34 DPGNIaTdlqAGA-----------~fGY~LLWVLLLAtIl~~llQeLAARLGVVTGK~--LAEicRe~Ypk~~~~~LwI~ 100 (1299)
||.+.....+.+. ...-+++|.+.+++++.|++ |+|+..=-. |.| .++|++..
T Consensus 224 d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYiv-----R~gi~dW~p~YL~e--~k~~s~~~------- 289 (448)
T COG2271 224 DPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVV-----RYGINDWGPLYLSE--VKGFSLVK------- 289 (448)
T ss_pred CchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHH-----HHHHhhhHHHHHHH--hcCCCHHH-------
Confidence 6666643344443 24457899999999998875 666642111 222 33455433
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHhh-CC--hhHHHHHHHHHHHHHHHhhc
Q 000759 101 TELSVILLDLTMVLGIAHGL---NLLM-GV--ELSTCVFLAAADAILFPFFA 146 (1299)
Q Consensus 101 aeLAIIasDIaEVIGtAIAL---NLLF-GI--PL~iGVLITavdt~lLL~lg 146 (1299)
+..++...+++.+.|+-++- -.+| |- |.-....+....++++.++.
T Consensus 290 a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~ 341 (448)
T COG2271 290 ANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLA 341 (448)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcC
Confidence 23333444444444543332 2355 33 55444444445555555554
No 136
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=28.65 E-value=20 Score=41.86 Aligned_cols=16 Identities=25% Similarity=0.557 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhccc
Q 000759 488 TSLCLMLWLATTPLRS 503 (1299)
Q Consensus 488 ~yl~f~lyL~~~pl~s 503 (1299)
+|++.++|+-++-...
T Consensus 175 LFlaiLIWlY~H~~~~ 190 (381)
T PF05297_consen 175 LFLAILIWLYVHDQRH 190 (381)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHhcCCCC
Confidence 5688888988876654
No 137
>COG3610 Uncharacterized conserved protein [Function unknown]
Probab=28.29 E-value=3.2e+02 Score=29.61 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=16.9
Q ss_pred CCCccccccccccccCCChHHHHH
Q 000759 188 QPEIPLSVNGMLTKFSGDSAFSIM 211 (1299)
Q Consensus 188 ~Pd~geVl~GLvP~lpg~sl~~aV 211 (1299)
.|...-.+.|++|-+|+...+.++
T Consensus 80 ~p~~v~~vpaIiPlVPG~~ay~am 103 (156)
T COG3610 80 TPAKVFTVPAIIPLVPGGLAYQAM 103 (156)
T ss_pred CChhhhecchhhhcCCcHHHHHHH
Confidence 344445567889999998887743
No 138
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=28.12 E-value=1.6e+03 Score=30.46 Aligned_cols=26 Identities=4% Similarity=-0.006 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhh
Q 000759 49 GFDLVALMLVFNFAAIFCQYLSARIA 74 (1299)
Q Consensus 49 GY~LLWVLLLAtIl~~llQeLAARLG 74 (1299)
-+.++|-++++.++++++=.+++++-
T Consensus 205 l~~~L~~i~~GiliG~vvG~l~~~Ll 230 (810)
T TIGR00844 205 CVTILWECIFGSILGCIIGYCGRKAI 230 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777777766666543
No 139
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=27.52 E-value=20 Score=41.74 Aligned_cols=36 Identities=8% Similarity=0.032 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhHhhhCCCccccc
Q 000759 160 QENYKAKLLWICTAGIILLSYVLGVLISQPEIPLSV 195 (1299)
Q Consensus 160 ~G~RKlE~l~~~LI~IM~L~FVv~afis~Pd~geVl 195 (1299)
+|......+..||..+.++.|++.+++.+-.|-.++
T Consensus 132 ~GAs~WtiLaFcLAF~LaivlLIIAv~L~qaWfT~L 167 (381)
T PF05297_consen 132 LGASFWTILAFCLAFLLAIVLLIIAVLLHQAWFTIL 167 (381)
T ss_dssp ------------------------------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 454333334345555566666666666666665443
No 140
>KOG1397 consensus Ca2+/H+ antiporter VCX1 and related proteins [Inorganic ion transport and metabolism]
Probab=26.96 E-value=4.4e+02 Score=32.64 Aligned_cols=53 Identities=15% Similarity=0.182 Sum_probs=36.4
Q ss_pred hHHhhhhHHHHHHHHHHHHHHHHHHHhhhhheecCCcHHHHHHhhcCcchhhHHHHH
Q 000759 44 GGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQ 100 (1299)
Q Consensus 44 AGA~fGY~LLWVLLLAtIl~~llQeLAARLGVVTGK~LAEicRe~Ypk~~~~~LwI~ 100 (1299)
.+-.|...|+-++.+|-.+++....++ ..||.++...++.-+|..+-.++.+.
T Consensus 95 ~~~vF~lsll~iiPLA~~l~~ateqls----~~tg~tvGgllNAtfGnaiElii~il 147 (441)
T KOG1397|consen 95 KGWVFLLSLLGIIPLAERLGFATEQLS----AYTGPTVGGLLNATFGNAIELIIYIL 147 (441)
T ss_pred chHHHHHHHhhhhhHHHHHHHHHHHHH----hhcCCcHHHHHhhhhccHHHHHHHHH
Confidence 445566666666666666666555554 55999999999999998766555443
No 141
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=26.83 E-value=7.7e+02 Score=29.42 Aligned_cols=22 Identities=9% Similarity=0.045 Sum_probs=12.3
Q ss_pred cccCCChHHHHHHHhcccchhH
Q 000759 200 TKFSGDSAFSIMSLLGASMMPH 221 (1299)
Q Consensus 200 P~lpg~sl~~aVALLGATIMPh 221 (1299)
|+-......+.+|++|=++---
T Consensus 119 P~~i~~~~ml~va~~GL~vN~~ 140 (296)
T COG1230 119 PPPIHYSGMLVVAIIGLVVNLV 140 (296)
T ss_pred CCCCCccchHHHHHHHHHHHHH
Confidence 5332335666778888555433
No 142
>PRK11469 hypothetical protein; Provisional
Probab=26.36 E-value=8.1e+02 Score=27.05 Aligned_cols=23 Identities=4% Similarity=0.241 Sum_probs=17.5
Q ss_pred hCChhHHHHHHHHHHHHHHHhhc
Q 000759 124 MGVELSTCVFLAAADAILFPFFA 146 (1299)
Q Consensus 124 FGIPL~iGVLITavdt~lLL~lg 146 (1299)
.|.+++..++++++.++++.+.+
T Consensus 129 ~g~~~~~~~~~ig~~s~~~~~~G 151 (188)
T PRK11469 129 LQVNIIATALAIGCATLIMSTLG 151 (188)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Confidence 47788888888888888887665
No 143
>PRK09796 PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Probab=26.25 E-value=1.4e+03 Score=28.86 Aligned_cols=56 Identities=16% Similarity=0.186 Sum_probs=26.5
Q ss_pred HHHHHHHHhHhhhCCCccccccccc---cccCCChHHHHHHHhcccchhHHHH-HhHHhh
Q 000759 175 IILLSYVLGVLISQPEIPLSVNGML---TKFSGDSAFSIMSLLGASMMPHNFY-LHSSIV 230 (1299)
Q Consensus 175 IM~L~FVv~afis~Pd~geVl~GLv---P~lpg~sl~~aVALLGATIMPhNlY-LHSaLV 230 (1299)
.+++++.+.+++..|=..-+-.++. -.+-...-.+..+++|+.--|-.++ +|-+++
T Consensus 255 tlli~~pl~l~viGPig~~i~~~i~~~i~~l~~~~~~i~g~i~g~~~~~lV~~G~H~~~~ 314 (472)
T PRK09796 255 IVLIAAPLAILLIGPIGIWIGSAISALVYTIHGYLGWLSVAIMGALWPLLVMTGMHRVFT 314 (472)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccchhhh
Confidence 4556666667777775433323321 1111111234566777654443333 565544
No 144
>PRK00816 rnfD electron transport complex protein RnfD; Reviewed
Probab=25.70 E-value=2.8e+02 Score=33.61 Aligned_cols=82 Identities=11% Similarity=0.133 Sum_probs=53.2
Q ss_pred HHHhhhhhHHhhhhhcccCChHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHhhhhheecCCcHHHHHHhhcCcchhhH
Q 000759 17 RLVPAVLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 96 (1299)
Q Consensus 17 kLLa~LGPGfLmSIAyIDPGNIaTdlqAGA~fGY~LLWVLLLAtIl~~llQeLAARLGVVTGK~LAEicRe~Ypk~~~~~ 96 (1299)
..+-.+=|++++++- .||++-+++++++++.+++++.+..|+ .+|...+.+.+ .-
T Consensus 22 ~VllALlP~~~~~i~---------------~fG~~al~~~~~~v~~av~~E~l~~k~---~~k~~~~~l~D----~S--- 76 (350)
T PRK00816 22 WVILAALPGIAAQTY---------------FFGWGTLIQILLAIVTALLAEAAVLKL---RKRPVAATLKD----NS--- 76 (350)
T ss_pred HHHHHHHHHHHHHHH---------------HHhHHHHHHHHHHHHHHHHHHHHHHHH---hCCCCccccCc----cc---
Confidence 334446788887663 689999999999999999999888775 22222111111 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Q 000759 97 IGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAA 137 (1299)
Q Consensus 97 LwI~aeLAIIasDIaEVIGtAIALNLLFGIPL~iGVLITav 137 (1299)
+.+.|.-+|+++--..|+|..++-+++
T Consensus 77 --------------a~vTglLlal~lPp~~P~W~~~iG~~f 103 (350)
T PRK00816 77 --------------ALLTALLLAVSIPPLAPWWMIVIGTVF 103 (350)
T ss_pred --------------HHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 123467777776556788877765443
No 145
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=25.48 E-value=1.1e+03 Score=27.81 Aligned_cols=63 Identities=14% Similarity=0.134 Sum_probs=37.8
Q ss_pred hHHHHHHhHHhhhhHHHHHHHHHHHHHHHH-HHHhhhhheecCCcHHHHHHhhcCcchhhHHHHH
Q 000759 37 KWAVIIEGGAHFGFDLVALMLVFNFAAIFC-QYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQ 100 (1299)
Q Consensus 37 NIaTdlqAGA~fGY~LLWVLLLAtIl~~ll-QeLAARLGVVTGK~LAEicRe~Ypk~~~~~LwI~ 100 (1299)
.|...+..=....-..+|++.+..++..++ -..+.|+.+...+.-.++.|- .|-.-.++.+.+
T Consensus 166 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~i~ntir~~v~~r~~ei~im~~-~GAt~~~I~~~f 229 (309)
T PRK11026 166 SWFARLAALTGLVGRVAAMIGVLMVAAVFLVIGNSVRLSIFSRRDTINVMKL-IGATDGFILRPF 229 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCChHHHHHHH
Confidence 555555544444444566555555554444 556899999999888888774 564444444433
No 146
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=24.40 E-value=4.1e+02 Score=29.64 Aligned_cols=42 Identities=10% Similarity=-0.009 Sum_probs=28.2
Q ss_pred HHHhHHHHHHHHHHhccccccCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 000759 406 IMLPSSVIPLFRVASSRQIMGVHKISQYHEFLVLITFMGMLGLKLIFMV 454 (1299)
Q Consensus 406 L~LPFaLIPLL~ftNsr~IMGefrNs~~~nILawli~llIi~LNI~fVv 454 (1299)
++|-..++..++|.|+| +.++.+.+.|....+++++-+-.++
T Consensus 119 l~Lal~~~~~iyfl~~K-------~~~~~rA~~~~~~~L~~G~~lGs~l 160 (194)
T PF11833_consen 119 LQLALGLGACIYFLNRK-------ERKLGRAFLWTLGGLVVGLILGSLL 160 (194)
T ss_pred hHHHHHHHHHHHHHHHh-------cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666677788888876 5567777777777766665444433
No 147
>PRK03557 zinc transporter ZitB; Provisional
Probab=24.22 E-value=9.2e+02 Score=28.30 Aligned_cols=155 Identities=10% Similarity=0.037 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh--CChhHHHHHHHHHHHHHHHhhcCcchhhHHHHhhhhhhHHHHHHHHHHHH
Q 000759 97 IGVQTELSVILLDLTMVLGIAHGLNLLM--GVELSTCVFLAAADAILFPFFAGQLFIDELIMLNFQENYKAKLLWICTAG 174 (1299)
Q Consensus 97 LwI~aeLAIIasDIaEVIGtAIALNLLF--GIPL~iGVLITavdt~lLL~lgs~~~~d~~~~~~y~G~RKlE~l~~~LI~ 174 (1299)
+|+...+.++.+-+.-+.|...+-..++ ++--..-++..++..+.+-+..+|-..+. -||..|+|.+..++.+
T Consensus 21 ~~~~~~~n~~l~i~k~~~g~~tgS~AllaDa~hsl~D~~~~~~~l~a~~~s~kp~d~~h-----pyG~~r~E~l~al~~~ 95 (312)
T PRK03557 21 LLYAFGVTAGFMLVEVIGGFLSGSLALLADAGHMLTDAAALLFALLAVQFSRRPPTIRH-----TFGWLRLTTLAAFVNA 95 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC-----CCchHHHHHHHHHHHH
Q ss_pred HHHHHHHHhHhhhCCCccccccccc-cccCCChHHHHHHHhcccchhHHHHHhHHhhhhccccccccchhchhhHHHHHH
Q 000759 175 IILLSYVLGVLISQPEIPLSVNGML-TKFSGDSAFSIMSLLGASMMPHNFYLHSSIVRRHQGQVNISKGALCHDHFFAIL 253 (1299)
Q Consensus 175 IM~L~FVv~afis~Pd~geVl~GLv-P~lpg~sl~~aVALLGATIMPhNlYLHSaLVqsR~~~~~~~k~al~~D~~~~i~ 253 (1299)
++++...+.++. +.+..++ |.-.......+++++|..+.-..+|+-..--+.+...-.......+.|.+.+.+
T Consensus 96 ~~l~~~~~~i~~------eai~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~s~~ 169 (312)
T PRK03557 96 IALVVITILIVW------EAIERFRTPRPVAGGMMMAIAVAGLLANILSFWLLHHGSEEKNLNVRAAALHVLGDLLGSVG 169 (312)
T ss_pred HHHHHHHHHHHH------HHHHHHcCCccccchHHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH
Q 000759 254 CIFSGIYMV 262 (1299)
Q Consensus 254 ~i~lgsfLI 262 (1299)
.++.+.+..
T Consensus 170 vlv~~~~~~ 178 (312)
T PRK03557 170 AIIAALIII 178 (312)
T ss_pred HHHHHHHHH
No 148
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=24.19 E-value=9.9e+02 Score=30.65 Aligned_cols=25 Identities=12% Similarity=0.206 Sum_probs=12.3
Q ss_pred HHHHHHhHHHH----HHHHHHhccccccC
Q 000759 403 MVAIMLPSSVI----PLFRVASSRQIMGV 427 (1299)
Q Consensus 403 I~SL~LPFaLI----PLL~ftNsr~IMGe 427 (1299)
++-..+|+++. ..+.|.+-.+-|-.
T Consensus 340 ~lf~~ip~ai~d~~f~~wIF~SL~~Tlk~ 368 (518)
T KOG2568|consen 340 ILFAALPLAILDAAFIYWIFISLAKTLKK 368 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666553 23345555555543
No 149
>CHL00204 ycf1 Ycf1; Provisional
Probab=24.15 E-value=2.9e+02 Score=39.64 Aligned_cols=27 Identities=19% Similarity=0.337 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHH-----H---HHHHHHHhhHHHHH
Q 000759 330 PFAFVLVLFFSN-----Q---IIAVNWNLSGQVVL 356 (1299)
Q Consensus 330 ~~IFAIGLLAAG-----q---SSTITgT~AGQ~Vm 356 (1299)
.++|.+-.+... . .|+.||-..||.+|
T Consensus 33 SylfllRa~vmee~~eGtekkvsAtTGfItGQL~m 67 (1832)
T CHL00204 33 SYLFLLRARVMEEGEEGTEKKVSATTGFITGQLMM 67 (1832)
T ss_pred HHHHHHHHHHhcccccccccceeeeehHHHHHHHH
Confidence 467777655542 1 26778888888776
No 150
>PRK11281 hypothetical protein; Provisional
Probab=24.12 E-value=1.7e+03 Score=31.35 Aligned_cols=152 Identities=10% Similarity=0.113 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhCCC---cCcchHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Q 000759 328 VVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLD---IPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMV 404 (1299)
Q Consensus 328 ~A~~IFAIGLLAAGqSSTITgT~AGQ~VmeGFLgl~---~~~w~rrLitRlIAIIPALiVal~~G~~~~~qLLi~aQVI~ 404 (1299)
++..++.++++-.-+..+..-..-.......| +|+ ...+.+.+-.....++|.+++..++... +..+..-.---.
T Consensus 578 ~~~~~~~~~~~w~~~~~~~~~~~~~Gl~~~HF-~w~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~-~~~~~~d~lg~~ 655 (1113)
T PRK11281 578 LWSWSLKLALFWLVFATCYRVLRPNGVAERHF-GMPKEQVSHFRRQIVRLSLALLPLLFWSVVAELS-PLGLADDVIGQA 655 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCeeHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-chhhhhhhHHHH
Q ss_pred HHHHhHHHHHHHHHHhccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCccchhHHHHHH
Q 000759 405 AIMLPSSVIPLFRVASSRQIMGVHKISQYHEFLVLITFMGMLGLKLIFMVEMIFGNSDWVGNLRWNSGGTVALPFAVFLI 484 (1299)
Q Consensus 405 SL~LPFaLIPLL~ftNsr~IMGefrNs~~~nILawli~llIi~LNI~fVv~~ifg~s~w~~~l~~~~~~~~~~~~~vl~i 484 (1299)
.+++-.++..++.+--.+....+...+....++-++..++=+++.+..+.-+++ ....++.=
T Consensus 656 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~P~~l~~l~~~GY~y------------------Ta~~l~~~ 717 (1113)
T PRK11281 656 VIIIALALIAFLVWPLCRESWRDKESHTLRLVVRTVLTIAPIALIVLVVLGYYY------------------TALRLIGR 717 (1113)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHH
Q ss_pred HHHHHHHHHHHHHHh
Q 000759 485 TTFTSLCLMLWLATT 499 (1299)
Q Consensus 485 ~~~~yl~f~lyL~~~ 499 (1299)
...-|...++|++++
T Consensus 718 l~~s~~l~~~~~l~~ 732 (1113)
T PRK11281 718 LIETLYLLIIWNLLY 732 (1113)
T ss_pred HHHHHHHHHHHHHHH
No 151
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.00 E-value=1.3e+03 Score=29.96 Aligned_cols=21 Identities=14% Similarity=0.363 Sum_probs=10.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHH
Q 000759 365 PGWLHHATIRIISIVPALYCVW 386 (1299)
Q Consensus 365 ~~w~rrLitRlIAIIPALiVal 386 (1299)
+.|++.++. ...+.|+++.++
T Consensus 393 ~~wk~~~~l-ta~l~PGivf~~ 413 (628)
T KOG1278|consen 393 REWKRNAIL-TAFLFPGIVFAI 413 (628)
T ss_pred CcchhhHHh-hhhhcchHHHHH
Confidence 456655432 333556655443
No 152
>PF01741 MscL: Large-conductance mechanosensitive channel, MscL; InterPro: IPR001185 Mechanosensitive ion channels (MscL) play a critical role in transducing physical stresses at the cell membrane into an electrochemical response. MscL is a protein which forms a channel organised as a homopentamer, with each subunit containing two transmembrane regions []. Prokaryotes harbor a large-conductance mechanosensitive channel (gene mscL) that opens in response to stretch forces in the membrane lipid bilayer and may participate in the regulation of osmotic pressure changes within the cell [].; GO: 0005216 ion channel activity, 0006810 transport, 0016021 integral to membrane; PDB: 3HZQ_A 2OAR_A.
Probab=23.65 E-value=1.1e+02 Score=32.02 Aligned_cols=54 Identities=11% Similarity=0.186 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCCcccccccCcchhhcccchhhhhc
Q 000759 477 LPFAVFLITTFTSLCLMLWLATTPLRSASSRNNAPDWSWEFQRAETFTEREEDNSKEARY 536 (1299)
Q Consensus 477 ~~~~vl~i~~~~yl~f~lyL~~~pl~s~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 536 (1299)
++-++-.++-++-++|++|++++|+.+...+.+.. +.+.+....|+..++|++-
T Consensus 70 yG~Fl~a~I~FlIiA~vvFlivk~~nk~~~~~~~~------~~~~~~~~~~~~ll~eIrd 123 (128)
T PF01741_consen 70 YGAFLNALINFLIIAFVVFLIVKPINKLKKKEEKE------EAEAPAPKTCEELLTEIRD 123 (128)
T ss_dssp HCHHHHHHHHHHHHHHHHHHCHHHHHHCHHTT-S----------H--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc------ccCCCCCCchHHHHHHHHH
Confidence 44455556677788999999999998875444333 1123334455556666553
No 153
>COG5522 Predicted integral membrane protein [Function unknown]
Probab=23.26 E-value=8.2e+02 Score=28.16 Aligned_cols=65 Identities=14% Similarity=0.173 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccccccc-----cCCCccchhHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 000759 442 FMGMLGLKLIFMVEMIFGNSDWVGNLRW-----NSGGTVALPFAVFLITTFTSLCLMLWLATTPLRSASSR 507 (1299)
Q Consensus 442 ~llIi~LNI~fVv~~ifg~s~w~~~l~~-----~~~~~~~~~~~vl~i~~~~yl~f~lyL~~~pl~s~~~~ 507 (1299)
.+++.+++++|+-..+..|=-.+.+=|. +.-.++.+ |++..+.+..-+.|++|+-++++|+..+.
T Consensus 162 ~~~~lg~~~lfinrrLGtNYlylsk~P~~~sildvlgpwp~-Yivs~v~ilca~~f~lyllfr~~kk~~~~ 231 (236)
T COG5522 162 VAISLGIMCLFINRRLGTNYLYLSKEPESASILDVLGPWPF-YIVSEVLILCAVWFLLYLLFRKLKKTYRP 231 (236)
T ss_pred HHHHHHHHHHHHHHHhcCceeEeecCCCchhHHHHhcCccH-HHHHHHHHHHHHHHHHHHhccccccccCc
Confidence 3455566666665555333222222221 11223333 44544444445778899999999987654
No 154
>PF03419 Peptidase_U4: Sporulation factor SpoIIGA This family belongs to family U4 of the peptidase classification.; InterPro: IPR005081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This group of peptidases belong to the MEROPS peptidase family U4 (SpoIIGA peptidase family, clan U-). Sporulation in bacteria such as Bacillus subtilis involves the formation of a polar septum, which divides the sporangium into a mother cell and a forespore. The sigma E factor, which is encoded within the spoIIG operon, is a cell-specific regulatory protein that directs gene transcription in the mother cell. Sigma E is synthesised as an inactive proprotein pro-sigma E, which is converted to the mature factor by the putative processing enzyme SpoIIGA []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis, 0030436 asexual sporulation
Probab=23.05 E-value=7.5e+02 Score=28.71 Aligned_cols=17 Identities=35% Similarity=0.489 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHhhhh
Q 000759 57 LVFNFAAIFCQYLSARI 73 (1299)
Q Consensus 57 LLAtIl~~llQeLAARL 73 (1299)
+.-.+|-+++-.+++|+
T Consensus 10 l~N~~md~~lL~~t~~~ 26 (293)
T PF03419_consen 10 LVNFLMDYFLLWLTARL 26 (293)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33445555556666553
No 155
>PRK11598 putative metal dependent hydrolase; Provisional
Probab=23.00 E-value=9.3e+02 Score=30.88 Aligned_cols=22 Identities=9% Similarity=0.037 Sum_probs=12.7
Q ss_pred CChhHHHHHHHHHHHHHHHhhc
Q 000759 125 GVELSTCVFLAAADAILFPFFA 146 (1299)
Q Consensus 125 GIPL~iGVLITavdt~lLL~lg 146 (1299)
.+++...+++.++.-.++++..
T Consensus 120 s~~~~~~~l~~gvlP~~~~~~~ 141 (545)
T PRK11598 120 TPQMLLWLGLSGVLPALIACWI 141 (545)
T ss_pred CHHHHHHHHHHHHHHHHHHHhh
Confidence 4556666666666655555443
No 156
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=22.72 E-value=1.8e+03 Score=28.82 Aligned_cols=69 Identities=17% Similarity=0.202 Sum_probs=45.4
Q ss_pred HHHHHHHhCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000759 381 ALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASSRQIMGVHKISQYHEFLVLITFMGMLGLKLIFMVEM 456 (1299)
Q Consensus 381 ALiVal~~G~~~~~qLLi~aQVI~SL~LPFaLIPLL~ftNsr~IMGefrNs~~~nILawli~llIi~LNI~fVv~~ 456 (1299)
++..+.-.| +.+.++.++.-.-.+|.+|++++-++- ++-+ -|.+.|++.+=-+...++++..++++--.
T Consensus 315 aL~Yiaqsg-~~~~g~~~l~al~LGMg~Plllv~~f~---~~~L---Pk~G~WM~~vK~~fGFvlLa~aiwLl~~~ 383 (569)
T COG4232 315 ALLYIAQSG-NALLGGLALYALGLGMGLPLLLIGVFG---NRLL---PKPGPWMNTVKQAFGFVLLATAIWLLWRV 383 (569)
T ss_pred HHHHHHhcc-hHHHHHHHHHHHHHhcccchhhheecc---cccC---CCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344 346777777777888889988877655 2322 47788888887777777777766666443
No 157
>PF02322 Cyto_ox_2: Cytochrome oxidase subunit II; InterPro: IPR003317 These proteins are cytochrome bd type terminal oxidases that catalyse quinol dependent, Na+ independent oxygen uptake []. Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. ; GO: 0055114 oxidation-reduction process, 0016020 membrane
Probab=22.71 E-value=1.4e+03 Score=27.40 Aligned_cols=14 Identities=14% Similarity=0.368 Sum_probs=7.8
Q ss_pred cccccccCCChHHH
Q 000759 196 NGMLTKFSGDSAFS 209 (1299)
Q Consensus 196 ~GLvP~lpg~sl~~ 209 (1299)
+.+-|.+.++....
T Consensus 46 ~sigPvWdgNevWL 59 (328)
T PF02322_consen 46 NSIGPVWDGNEVWL 59 (328)
T ss_pred HhhccccchHHHHH
Confidence 43447777665443
No 158
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=22.65 E-value=1.1e+03 Score=26.80 Aligned_cols=33 Identities=12% Similarity=-0.018 Sum_probs=16.6
Q ss_pred HHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHh
Q 000759 38 WAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLS 70 (1299)
Q Consensus 38 IaTdlqAGA~fGY~LLWVLLLAtIl~~llQeLA 70 (1299)
+.-.+.-|+.+.-...|.+.++.++==+.+.++
T Consensus 185 ~~eGl~ig~~~~~~~~~~~~~ai~~Hk~~e~~~ 217 (317)
T PF02535_consen 185 FFEGLAIGAAFSSDSGWSLFIAIILHKIPEGFA 217 (317)
T ss_pred chhhhhhhcchhhhhHHHHHHHHHHhHhHHHhh
Confidence 333444555555555566655555444444443
No 159
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=22.54 E-value=1.7e+03 Score=28.40 Aligned_cols=18 Identities=33% Similarity=0.501 Sum_probs=14.6
Q ss_pred hHHHHHhHHhhhhccccc
Q 000759 220 PHNFYLHSSIVRRHQGQV 237 (1299)
Q Consensus 220 PhNlYLHSaLVqsR~~~~ 237 (1299)
|||-|-||..+.+|.+..
T Consensus 251 ~~~~~~~~~~~~~~~~~~ 268 (477)
T PRK12821 251 PHNAYSLSGFFHRRYKHA 268 (477)
T ss_pred ccchhhhhhhhhhhhhhc
Confidence 888899999998887543
No 160
>PLN00150 potassium ion transporter family protein; Provisional
Probab=21.73 E-value=2.1e+03 Score=29.27 Aligned_cols=16 Identities=13% Similarity=0.287 Sum_probs=13.2
Q ss_pred ccHHHhhcccceeccc
Q 000759 743 ITQEARAKKLDLVLGV 758 (1299)
Q Consensus 743 ~t~~a~~~~~~~~lg~ 758 (1299)
.-++||.++.=.++|=
T Consensus 713 ~L~~A~eaGVvYIlG~ 728 (779)
T PLN00150 713 FLNKCKEAGVVYILGN 728 (779)
T ss_pred HHHHHHHcCcEEEecc
Confidence 4688999999999983
No 161
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=20.82 E-value=1.2e+03 Score=30.14 Aligned_cols=38 Identities=18% Similarity=0.069 Sum_probs=32.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhCCC
Q 000759 326 SPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLD 363 (1299)
Q Consensus 326 G~~A~~IFAIGLLAAGqSSTITgT~AGQ~VmeGFLgl~ 363 (1299)
.|+..++.++++-+.-|||+-|..+...+|-.|++.++
T Consensus 46 np~~gvl~Gi~~T~llQSStatt~lt~gfV~aGl~sl~ 83 (533)
T COG1283 46 NPILGVLAGIVATALLQSSTATTVLTIGFVAAGLLSLK 83 (533)
T ss_pred CcHHHHHHHHHHHHHHHhcchHHHHHHHHHhccccchh
Confidence 57777888888888889999999999999999998754
No 162
>TIGR00341 conserved hypothetical protein TIGR00341. This conserved hypothetical protein is found so far only in three archaeal genomes and in Streptomyces coelicolor. It shares a hydrophobic uncharacterized domain (see model TIGR00271) of about 180 residues with several eubacterial proteins, including the much longer protein sll1151 of Synechocystis PCC6803.
Probab=20.73 E-value=1.5e+03 Score=27.33 Aligned_cols=42 Identities=21% Similarity=0.139 Sum_probs=19.8
Q ss_pred HHHHHhhcCcchhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHh
Q 000759 82 AQICGEEYDKWTCVFIGVQTELSVILLDL----TMVLGIAHGLNLL 123 (1299)
Q Consensus 82 AEicRe~Ypk~~~~~LwI~aeLAIIasDI----aEVIGtAIALNLL 123 (1299)
.|+.-+--|..+.+++-+.+.++...+.. ..++|.||+..++
T Consensus 199 ~ei~~r~~p~~~~l~vAl~aG~AGalsl~~~~s~aLvGVaIAvaLv 244 (325)
T TIGR00341 199 PQILSRTEVSPVSEILAVLAGIAGILSLSSGILESLAGVAISASLL 244 (325)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhh
Confidence 34443333444444444444433333322 2367888877654
No 163
>PF02322 Cyto_ox_2: Cytochrome oxidase subunit II; InterPro: IPR003317 These proteins are cytochrome bd type terminal oxidases that catalyse quinol dependent, Na+ independent oxygen uptake []. Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. ; GO: 0055114 oxidation-reduction process, 0016020 membrane
Probab=20.31 E-value=1e+03 Score=28.31 Aligned_cols=28 Identities=18% Similarity=0.089 Sum_probs=20.0
Q ss_pred HHHHHHHHhhhhheecCCcHHHHHHhhc
Q 000759 62 AAIFCQYLSARIAVVTGKDLAQICGEEY 89 (1299)
Q Consensus 62 l~~llQeLAARLGVVTGK~LAEicRe~Y 89 (1299)
+...++.-+.-+..-|...+.+-.|+..
T Consensus 168 v~~~~~~GA~~l~~kt~g~l~~rar~~a 195 (328)
T PF02322_consen 168 VALFALHGAVFLALKTEGELRERARRWA 195 (328)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 3445566677788888888888888643
No 164
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=20.22 E-value=2.1e+03 Score=28.58 Aligned_cols=110 Identities=14% Similarity=0.029 Sum_probs=50.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhCCCcCcc--hHHHHHHH-HHHHHHHHHHH-HhCchhHHHHHHHHH
Q 000759 326 SPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLDIPGW--LHHATIRI-ISIVPALYCVW-TSGAEGVYQLLIFTQ 401 (1299)
Q Consensus 326 G~~A~~IFAIGLLAAGqSSTITgT~AGQ~VmeGFLgl~~~~w--~rrLitRl-IAIIPALiVal-~~G~~~~~qLLi~aQ 401 (1299)
+.+-.++|-+.|++.|+.|++.+.-+ ++.+........+ .|.+.+.. ++..+.+.... -.|......+++.--
T Consensus 422 s~fWs~iFFlmL~~lgl~s~~g~~e~---iit~l~d~~~~~l~~~~e~~~~~~~l~~~~~~l~~~~~~g~y~~~ll~~y~ 498 (629)
T KOG3659|consen 422 SSFWSVIFFLMLLTLGLDSMFGGIEA---IITPLLDEFYLSLRKHRELFTLLVCLFSFLLGLPFITAGGGYVFPLLIDYA 498 (629)
T ss_pred hHHHHHHHHHHHHHHhhHhhhhhHHH---HhccccchhhhHhhhhHHHHHHHHHHHHHhhhhhhccccceeeehhhHHHh
Confidence 34445677788888888777644332 4444443221111 11222222 22222222111 112112233444433
Q ss_pred HHHHHHHhHHHHH--------HHHHHhccccccCCCchHHHHHHH
Q 000759 402 VMVAIMLPSSVIP--------LFRVASSRQIMGVHKISQYHEFLV 438 (1299)
Q Consensus 402 VI~SL~LPFaLIP--------LL~ftNsr~IMGefrNs~~~nILa 438 (1299)
+..+++.++.+.. +=.|.+|=+.|=.|+++++.++.-
T Consensus 499 ~~~~vl~~Vlie~i~VswvYG~~rf~~d~~~Mlg~~P~~yw~v~w 543 (629)
T KOG3659|consen 499 AGLLVLFVVLIEAIAVSWVYGVRRFSADVKQMLGFRPGWYWRVCW 543 (629)
T ss_pred hhhHHHHHHHHHHHHHHhhhhHhHHHHHHHHHhCCCCchhHHHHH
Confidence 4444444433322 224667777787889988876543
No 165
>PLN00148 potassium transporter; Provisional
Probab=20.01 E-value=2.3e+03 Score=29.00 Aligned_cols=31 Identities=13% Similarity=-0.062 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHH--HHHHHHhhH--HHHHhhhh
Q 000759 330 PFAFVLVLFFSNQI--IAVNWNLSG--QVVLQDFL 360 (1299)
Q Consensus 330 ~~IFAIGLLAAGqS--STITgT~AG--Q~VmeGFL 360 (1299)
..+|.++.+|+-.. +.|+++++- |.+--|+|
T Consensus 342 ~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~f 376 (785)
T PLN00148 342 WPVFVIATLAAIVGSQAVITATFSIVKQCHALGCF 376 (785)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34666666666544 466777654 66656665
Done!