Query 000759
Match_columns 1299
No_of_seqs 221 out of 1366
Neff 4.0
Searched_HMMs 29240
Date Tue Mar 26 16:51:20 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000759.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_530-534//hhsearch_pdb/000759hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jln_A MHP1; hydantoin, transp 1.0 1 1 80.1 34.5 329 25-417 33-380 (501)
2 3dh4_A Sodium/glucose cotransp 1.0 1 1 65.8 30.9 117 28-147 31-152 (530)
3 2xq2_A Sodium/glucose cotransp 1.0 1 1 59.6 38.7 115 30-147 62-181 (593)
4 3l1l_A Arginine/agmatine antip 1.0 1 1 49.4 37.5 33 325-357 270-302 (445)
5 4djk_A Probable glutamate/gamm 1.0 1 1 46.5 37.6 32 326-357 286-317 (511)
6 3gia_A Uncharacterized protein 1.0 1 1 42.2 39.0 31 326-356 269-299 (444)
7 2a65_A Leutaa, Na(+):neurotran 1.0 1 1 27.3 29.0 122 326-455 337-470 (519)
8 4ain_A Glycine betaine transpo 1.0 1 1 26.6 17.8 49 29-79 35-89 (539)
9 2lam_A Cyclotide CTER M; insec 1.0 1 1 19.7 0.9 13 1246-1258 1-13 (29)
10 2gj0_A Cycloviolacin O14; cycl 1.0 1 1 19.3 -1.0 13 1246-1258 2-14 (31)
No 1
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=1.00 E-value=1 Score=80.15 Aligned_cols=329 Identities=10% Similarity=-0.001 Sum_probs=154.4
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 886656222687278888868844457---99999999999999999765213012973999998322861166999999
Q 000759 25 VLLISIGYVDPGKWAVIIEGGAHFGFD---LVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQT 101 (1299)
Q Consensus 25 GlLvSIAYIDPGNIaTdlqAGA~fGY~---LLWVLLLAtIlaillQ~LAARLGVVTGk~LAEicRe~Ypk~~~~~LwIla 101 (1299)
..+...+-+..+++.......+ |.. -++.+++++++..++-.+.+++|..+|..-...+|..||++.+.+..+..
T Consensus 33 ~~~W~g~~~~i~~~~~Ga~~~~--GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~Gl~~~v~~R~~FG~~Gs~i~~ll~ 110 (501)
T 2jln_A 33 AAIWFAMAIQVAIFIAAGQMTS--SFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWGINFTVAARMPFGIRGSLIPITLK 110 (501)
T ss_dssp HHHHHHHHCSTHHHHHHHHHTT--TSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCCCHHHHTTTTSCTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHH
T ss_conf 9999999988999999998835--86899999999999999999999986887451997455348413515899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HCCH-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999998974----0881-6899999999999998620740266899865555577999999999999
Q 000759 102 ELSVILLDLTMVLGIAHGLNLL----MGVE-LSTCVFLAAADAILFPFFAGQLFIDELIMLNFQENYKAKLLWICTAGII 176 (1299)
Q Consensus 102 eLAIIasDIaEVIGtAIALnLL----FGiP-LwiGVLITavdtllLL~l~s~~~~d~~~~l~y~G~RKlE~li~~LI~IM 176 (1299)
.+..++...-+....+.+++.+ +|++ .|+++++..+..+++.+++ +...++++.+...++.++
T Consensus 111 ~i~~igw~~v~~~~gg~al~~~~~~~~g~~~~~v~~~i~~~l~~~~~~~G------------~~~i~~~~~~~~p~~~i~ 178 (501)
T 2jln_A 111 ALLSLFWFGFQTWLGALALDEITRLLTGFTNLPLWIVIFGAIQVVTTFYG------------ITFIRWMNVFASPVLLAM 178 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHTTH------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC------------HHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999986186158999999999999999918------------999999999999999999
Q ss_pred HHHHHHHHHHHCCCC--CCCCCCCCCCCCCCHHHHHHHH-HCCCCHHHHHHHHHHHHHHCCCCCCCC-CHHCHHH----H
Q ss_conf 999997686417880--0011521345687828999998-616521489998677655124665510-0000235----8
Q 000759 177 LLSYVLGVLISQPEI--PLSVNGMLTKFSGDSAFSIMSL-LGASMMPHNFYLHSSIVRRHQGQVNIS-KGALCHD----H 248 (1299)
Q Consensus 177 ~LsFvielfis~Pd~--geVl~GlVP~lpg~sl~~aVAL-IGATIMPHNlYLHSaLVqsR~~~~~~~-k~a~~~D----~ 248 (1299)
.+.+.+.++ .+.++ +.+.. .-|....-+...++.+ +|..+ +...+ .+-. +|..+++.. .++..+. .
T Consensus 179 ~i~~~~~~l-~~~g~~~~~~~~-~~~~~~~~~f~~ai~~~~~~~~-~~~~~-~~Dy--sRy~~~~~~~~~~~~~~~~~~~ 252 (501)
T 2jln_A 179 GVYMVYLML-DGADVSLGEVMS-MGGENPGMPFSTAIMIFVGGWI-AVVVS-IHDI--VKECKVDPNASREGQTKADARY 252 (501)
T ss_dssp HHHHHHHHH-HHHTCCHHHHTT-CCCSSCCSCHHHHHHHHHTTTH-HHHTT-THHH--HTTBCCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHCCCCCHHHHC-CCCCCCHHHHHHHHHHHHHHHH-HHHHC-CCCC--CCCCCCCCCCCCCCHHHCCCHH
T ss_conf 999999999-846876202430-6886424799999999999999-99852-6763--3417897542111022112038
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCH
Q ss_conf 99999999999999999999862000137843354887999988754210145676443356630136465544115315
Q 000759 249 FFAILCIFSGIYMVNYVLMNSAANLFYSTGLVLLTFQDAMSLMEQLFAYSFCSNNNYHLLHTHPMISIRIVEMQVFRSPV 328 (1299)
Q Consensus 249 ~~sil~i~lgsfLINlaIIiVaAavLy~tGi~V~T~qDAa~aLepl~a~~fc~~~~~~Ll~~~~l~s~gi~~a~llgG~~ 328 (1299)
+.+. +.+.++.+..+..+++..-...+ ..+..+ .+.. .+.++.
T Consensus 253 ~~g~---~lG~~i~~~~~~~lG~~~~~~~~--~~dp~~---~l~~-----------------------------~l~~~~ 295 (501)
T 2jln_A 253 ATAQ---WLGMVPASIIFGFIGAASMVLVG--EWNPVI---AITE-----------------------------VVGGVS 295 (501)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHHHHHS--CSCHHH---HHHH-----------------------------HHTCCC
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHCC--CCCHHH---HHHH-----------------------------HHCCCH
T ss_conf 9999---89999999999999999987402--268999---9999-----------------------------713405
Q ss_pred H-HHHHH-HHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 8-99999-9999988787997-7755899985330788676137789999999999999997096227999999999999
Q 000759 329 V-PFAFV-LVLFFSNQIIAVN-WNLSGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVA 405 (1299)
Q Consensus 329 A-~~IFA-IGLLAAGqSSTIT-gTlAGQ~VmeGFLgl~~~~w~RrLitRlIAIIPaLiVal~~G~~gl~qLLi~sQVI~S 405 (1299)
. ..+.. +.++.+..++.+. ..|+....++.++...++. |+. +.+++++. ++++. .+. ...+..|...+..
T Consensus 296 ~~~~~~~~~~~~la~i~tn~~~n~ys~~~~l~~~~~~~i~~--~~~-~~i~~vi~-~~i~~-~~~--~~~f~~FL~~lg~ 368 (501)
T 2jln_A 296 IPMAILFQVFVLLATWSTNPAANLLSPAYTLCSTFPRVFTF--KTG-VIVSAVVG-LLMMP-WQF--AGVLNTFLNLLAS 368 (501)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHTHHHHHHHHHHSTTTCCH--HHH-HHHHHHHH-HHTCG-GGT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH--HHH-HHHHHHHH-HHHHH-HHH--HHHHHHHHHHHHH
T ss_conf 99999999999999999997711888999999948666662--589-99999999-99999-986--8799999999999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 987677999999
Q 000759 406 IMLPSSVIPLFR 417 (1299)
Q Consensus 406 L~LPFALIPLL~ 417 (1299)
+.-|...|-+.-
T Consensus 369 ~l~P~~gI~l~D 380 (501)
T 2jln_A 369 ALGPLAGIMISD 380 (501)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999999
No 2
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=1.00 E-value=1 Score=65.78 Aligned_cols=117 Identities=9% Similarity=0.157 Sum_probs=72.3
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHEECCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 65622268727888886884445799999999----99999999976521301297399999832286116699999999
Q 000759 28 ISIGYVDPGKWAVIIEGGAHFGFDLVALMLVF----NFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTEL 103 (1299)
Q Consensus 28 vSIAYIDPGNIaTdlqAGA~fGY~LLWVLLLA----tIlaillQ~LAARLGVVTGk~LAEicRe~Ypk~~~~~LwIlaeL 103 (1299)
+.+.++....+......+..+|+.-+|..+.+ .++++++-...-|.++ .++.|..+++|++..+.+.-+...+
T Consensus 31 ~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~---~T~~e~l~~Rfg~~~~~~~a~~~l~ 107 (530)
T 3dh4_A 31 LIAANISAEQFIGMSGSGYSIGLAIASYEWMSAITLIIVGKYFLPIFIEKGI---YTIPEFVEKRFNKKLKTILAVFWIS 107 (530)
T ss_dssp HHHHHCSHHHHTHHHHHHHHTCGGGHHHHHHHHHHHHHHHHHTHHHHHHTTC---CSHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9999987999987799999827599999999999999999999999998699---1499999998496889999999999
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999-999999999998974088168999999999999986207
Q 000759 104 SVILL-DLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAG 147 (1299)
Q Consensus 104 AIIas-DIaEVIGtAIALnLLFGiPLwiGVLITavdtllLL~l~s 147 (1299)
..+.. -...+.+.+..++.++|+|.+++++++++.+.+...++.
T Consensus 108 ~~~~~~~~~~l~~~~~~~~~~~Gi~~~~~i~i~~~i~~~Yt~~GG 152 (530)
T 3dh4_A 108 LYIFVNLTSVLYLGGLALETILGIPLMYSILGLALFALVYSIYGG 152 (530)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999999999999999699889999999999999997134
No 3
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=1.00 E-value=1 Score=59.64 Aligned_cols=115 Identities=9% Similarity=0.152 Sum_probs=71.7
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHHEECCCCHHHHHHHHCCCCHHHHHHHHHHHH-
Q ss_conf 6222687278888868844457999999---99-999999999765213012973999998322861166999999999-
Q 000759 30 IGYVDPGKWAVIIEGGAHFGFDLVALML---VF-NFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELS- 104 (1299)
Q Consensus 30 IAYIDPGNIaTdlqAGA~fGY~LLWVLL---LA-tIlaillQ~LAARLGVVTGk~LAEicRe~Ypk~~~~~LwIlaeLA- 104 (1299)
+.++....+......+..+|+.-+|..+ +. .++++++-..--|.++ .++.|..++||++..+.+.-+...+.
T Consensus 62 at~~sa~t~lG~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~---~T~~e~l~~Rfg~~~~~~~ai~~l~~~ 138 (593)
T 2xq2_A 62 AANISAEQFIGMSGSGYSIGLAIASYEWMSAITLIIVGKYFLPIFIEKGI---YTIPEFVEKRFNKKLKTILAVFWISLY 138 (593)
T ss_dssp GGGSSHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHHHTHHHHHHHTTC---CSHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCCHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 98725899963769999718799999999999999999999999985799---972799998826750799999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999999998974088168999999999999986207
Q 000759 105 VILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAG 147 (1299)
Q Consensus 105 IIasDIaEVIGtAIALnLLFGiPLwiGVLITavdtllLL~l~s 147 (1299)
++..-...+.+.+..++.++|+|.+.++++.++.+.++..++.
T Consensus 139 ~~~~~~~~l~~~~~~l~~~~Gi~~~~~i~i~~~i~~~Yt~~GG 181 (593)
T 2xq2_A 139 IFVNLTSVLYLGGLALETILGIPLMYSILGLALFALVYSIYGG 181 (593)
T ss_dssp HHTHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999999999994085599999999999999987214
No 4
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=1.00 E-value=1 Score=49.36 Aligned_cols=33 Identities=6% Similarity=-0.101 Sum_probs=25.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 531589999999999887879977755899985
Q 000759 325 RSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQ 357 (1299)
Q Consensus 325 gG~~A~~IFAIGLLAAGqSSTITgTlAGQ~Vme 357 (1299)
+|++...++.++++.+.+++..+..++...++.
T Consensus 270 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~ 302 (445)
T 3l1l_A 270 LGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAK 302 (445)
T ss_dssp HCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 647799999999999999999999999799999
No 5
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=1.00 E-value=1 Score=46.46 Aligned_cols=32 Identities=6% Similarity=0.004 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 31589999999999887879977755899985
Q 000759 326 SPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQ 357 (1299)
Q Consensus 326 G~~A~~IFAIGLLAAGqSSTITgTlAGQ~Vme 357 (1299)
.++...++.++++.+..++..+..++...++.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~ 317 (511)
T 4djk_A 286 IEWTVRVISALLLLGVLAEIASWIVGPSRGMY 317 (511)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHTTHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 15999999999999999999999998899999
No 6
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=1.00 E-value=1 Score=42.23 Aligned_cols=31 Identities=13% Similarity=-0.034 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3158999999999988787997775589998
Q 000759 326 SPVVPFAFVLVLFFSNQIIAVNWNLSGQVVL 356 (1299)
Q Consensus 326 G~~A~~IFAIGLLAAGqSSTITgTlAGQ~Vm 356 (1299)
|++...+..++.+.+..++..+..+++..++
T Consensus 269 g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l 299 (444)
T 3gia_A 269 GNLGFLLISIGALFSISSAMNATIYGGANVA 299 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 2789999999999999999999999988999
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=1.00 E-value=1 Score=27.28 Aligned_cols=122 Identities=11% Similarity=0.068 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 315899999999998878799777558-9998533078867613778999999999999999709622799999999999
Q 000759 326 SPVVPFAFVLVLFFSNQIIAVNWNLSG-QVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMV 404 (1299)
Q Consensus 326 G~~A~~IFAIGLLAAGqSSTITgTlAG-Q~VmeGFLgl~~~~w~RrLitRlIAIIPaLiVal~~G~~gl~qLLi~sQVI~ 404 (1299)
|+.-..+|-+.++.+|.+|.+...-.- ..+++.| + +++++-.++.-++..+-++.++ .+..+ .++.++ ...
T Consensus 337 g~~~~~lFF~~l~~agltS~i~~~E~~vt~l~D~~-~--~~R~~~~~~v~~~~fllgl~~~--~~~~g-~~~~D~--~~~ 408 (519)
T 2a65_A 337 GTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDEL-K--LSRKHAVLWTAAIVFFSAHLVM--FLNKS-LDEMDF--WAG 408 (519)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-C--CCHHHHHHHHHHHHHHHHHHHH--HBTTH-HHHHHH--HTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHHHHHHHHH--CCCCC-CCHHHH--HHH
T ss_conf 41369999999999999998778657689999751-8--7489999999999999999997--37998-425799--986
Q ss_pred HHHHHHHHHHHHHH----------HHCCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHH
Q ss_conf 99876779999998----------715433367775379999-9999999999999999999
Q 000759 405 AIMLPSSVIPLFRV----------ASSRQIMGVHKISQYHEF-LVLITFMGMLGLKLIFMVE 455 (1299)
Q Consensus 405 SL~LPFALIPLL~l----------tSsr~IMGefrNS~~~ni-Lawii~liIi~LNIyfVv~ 455 (1299)
.+.+|+..+....+ ..+-+-|..++.++++++ +.+++-++++.+=+..+++
T Consensus 409 ~~~l~~~~l~~~i~v~wv~g~~~~~~~i~~~~~~~~~~~w~~~~~~v~P~~l~~i~~~~~~~ 470 (519)
T 2a65_A 409 TIGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVMRYITPAFLAVLLVVWARE 470 (519)
T ss_dssp THHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCSSCCCTHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHEEEEHHHHHHHHHCCCCCCHHHHHHHEEEEHHHHHHHHHHHHHHHH
T ss_conf 79999999999972100343357999987056776689998727745799999999999994
No 8
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=1.00 E-value=1 Score=26.63 Aligned_cols=49 Identities=12% Similarity=0.270 Sum_probs=23.6
Q ss_pred HHHCCCCCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEC-CC
Q ss_conf 56222687278888868-----84445799999999999999999765213012-97
Q 000759 29 SIGYVDPGKWAVIIEGG-----AHFGFDLVALMLVFNFAAIFCQYLSARIAVVT-GK 79 (1299)
Q Consensus 29 SIAYIDPGNIaTdlqAG-----A~fGY~LLWVLLLAtIlaillQ~LAARLGVVT-Gk 79 (1299)
..+.++|......+.+. ..||+-.+|...+..++. +-..-.|+|-+. |+
T Consensus 35 ~~~~~~p~~~~~~~~~~~~~i~~~fgW~y~l~~~~~~~f~--l~lafS~~G~IrLG~ 89 (539)
T 4ain_A 35 VWGIGFKDSFTNFASSALSAVVDNLGWAFILFGTVFVFFI--VVIAASKFGTIRLGR 89 (539)
T ss_dssp HHHHTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHSGGGSCBSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHEECCCCCEECCC
T ss_conf 9999878999999999999999887699999999999988--876045777550089
No 9
>2lam_A Cyclotide CTER M; insecticidal peptide, antiviral protein; NMR {Clitoria ternatea}
Probab=1.00 E-value=1 Score=19.68 Aligned_cols=13 Identities=31% Similarity=0.981 Sum_probs=10.4
Q ss_pred CCCCCCCCCEECC
Q ss_conf 4776799840025
Q 000759 1246 SVPHCGDGCIWKV 1258 (1299)
Q Consensus 1246 ~~p~cg~~cvw~~ 1258 (1299)
++|.|||.|||-.
T Consensus 1 G~p~CGEsCv~~~ 13 (29)
T 2lam_A 1 GLPTCGETCTLGT 13 (29)
T ss_dssp CBCTTCCCCSSSC
T ss_pred CCCCCCCCEEEEE
T ss_conf 9887626556457
No 10
>2gj0_A Cycloviolacin O14; cyclotide, plant protein; NMR {Viola odorata}
Probab=1.00 E-value=1 Score=19.28 Aligned_cols=13 Identities=38% Similarity=1.012 Sum_probs=10.0
Q ss_pred CCCCCCCCCEECC
Q ss_conf 4776799840025
Q 000759 1246 SVPHCGDGCIWKV 1258 (1299)
Q Consensus 1246 ~~p~cg~~cvw~~ 1258 (1299)
++|.|||.|||-.
T Consensus 2 g~p~CGEsC~~~p 14 (31)
T 2gj0_A 2 SIPACGESCFKGK 14 (31)
T ss_dssp BHHHHCBCCSSSC
T ss_pred CCCCCCCCEEEEE
T ss_conf 8786647526355
Done!