Query 000759
Match_columns 1299
No_of_seqs 221 out of 1366
Neff 4.0
Searched_HMMs 13730
Date Tue Mar 26 16:58:51 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000759.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_530-534//hhsearch_scop/000759hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2a65a1 f.54.1.1 (A:5-513) Na( 45.7 5.5 0.0004 14.4 35.7 124 326-456 333-467 (509)
2 d1kala_ g.3.3.1 (A:) Kalata B1 8.3 37 0.0027 8.6 0.3 11 1246-1256 9-19 (29)
3 d1x9za_ d.292.1.1 (A:) DNA mis 4.8 74 0.0054 6.5 0.3 10 283-292 141-150 (182)
4 d1dfna_ g.9.1.1 (A:) Defensin 4.3 86 0.0063 6.0 0.5 12 864-875 5-16 (30)
5 d2bh1a1 c.55.1.11 (A:146-239) 3.7 1E+02 0.0074 5.5 0.4 21 1176-1196 10-34 (94)
6 d1gx5a_ e.8.1.4 (A:) Viral RNA 3.3 1.1E+02 0.0078 5.3 -0.2 11 78-88 82-92 (530)
7 d2iaya1 d.376.1.1 (A:1-113) Hy 2.8 1.4E+02 0.011 4.4 0.1 55 1030-1098 4-58 (113)
8 d1ri9a_ b.34.2.1 (A:) Fyn-bind 2.8 1E+02 0.0075 5.4 -0.8 8 1286-1293 65-72 (77)
9 d1okja1 c.55.1.9 (A:1-106) Hyp 2.7 87 0.0064 5.9 -1.2 9 690-698 63-71 (106)
10 d1pjqa3 e.37.1.1 (A:114-215) S 2.4 1.4E+02 0.01 4.5 -0.5 55 684-750 1-55 (102)
No 1
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=45.74 E-value=5.5 Score=14.39 Aligned_cols=124 Identities=15% Similarity=0.099 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 31589999999999887879977755899985330788676137789999999999999997096227999999999999
Q 000759 326 SPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVA 405 (1299)
Q Consensus 326 G~~A~~IFAIGLLAAGqSSTITgTlAGQ~VmeGFLgl~~~~w~RrLitRlIAIIPaLiVal~~G~~gl~qLLi~sQVI~S 405 (1299)
|..-..+|-+.++.+|.+|.+.....--....+-++ +++.+...++.++ +.-...+. +....+ ..++++ ....
T Consensus 333 ~~~~~~lFF~~l~~~gl~s~i~~~e~~v~~l~d~~~--~~r~~~~~~~~~~-~~~~~~~~-~~~~~~-~~~~D~--~~~~ 405 (509)
T d2a65a1 333 GTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELK--LSRKHAVLWTAAI-VFFSAHLV-MFLNKS-LDEMDF--WAGT 405 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC--CCHHHHHHHHHHH-HHHHHHHH-HHBTTH-HHHHHH--HTTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC--CCHHHHHHHEEEE-EEHHHHHH-HHHCCH-HHHHHH--HHHH
T ss_conf 413799999999999998773363304489898649--8636035230678-87252478-873531-888999--9999
Q ss_pred HHHHHHHHH----HH------HHHHCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 987677999----99------987154333677753-7999999999999999999999999
Q 000759 406 IMLPSSVIP----LF------RVASSRQIMGVHKIS-QYHEFLVLITFMGMLGLKLIFMVEM 456 (1299)
Q Consensus 406 L~LPFALIP----LL------~ltSsr~IMGefrNS-~~~niLawii~liIi~LNIyfVv~~ 456 (1299)
+.+|+..+. +. ++..+-+-|..++.+ .+.-.+-+++-++++.+=++.+++.
T Consensus 406 ~~l~~~~l~e~i~v~w~yg~~r~~~di~~~~~~~~~~~~~~~~~~i~Pi~l~~ili~~~~~~ 467 (509)
T d2a65a1 406 IGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVMRYITPAFLAVLLVVWAREY 467 (509)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCSSCCCTHHHHHHHTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHEEEEEECHHHHHHHHHHCCCCCHHHHHHHHEEEEEHHHHHHEEEHHHHHC
T ss_conf 99999999998602237538999999984789877899987403423853635254238642
No 2
>d1kala_ g.3.3.1 (A:) Kalata B1 {African plant (Oldenlandia affinis) [TaxId: 60225]}
Probab=8.32 E-value=37 Score=8.61 Aligned_cols=11 Identities=36% Similarity=1.153 Sum_probs=8.5
Q ss_pred CCCCCCCCCEE
Q ss_conf 47767998400
Q 000759 1246 SVPHCGDGCIW 1256 (1299)
Q Consensus 1246 ~~p~cg~~cvw 1256 (1299)
.+|-|||-||=
T Consensus 9 glpicgetcvg 19 (29)
T d1kala_ 9 GLPVCGETCVG 19 (29)
T ss_dssp TEECSSCCCTT
T ss_pred CCCCCCCCCCC
T ss_conf 85342553036
No 3
>d1x9za_ d.292.1.1 (A:) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]}
Probab=4.81 E-value=74 Score=6.45 Aligned_cols=10 Identities=20% Similarity=0.567 Sum_probs=3.9
Q ss_pred CHHHHHHHHH
Q ss_conf 4887999988
Q 000759 283 TFQDAMSLME 292 (1299)
Q Consensus 283 T~qDAa~aLe 292 (1299)
+..++..++.
T Consensus 141 s~~E~~~LL~ 150 (182)
T d1x9za_ 141 SMAQAITLLA 150 (182)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
T ss_conf 9999999999
No 4
>d1dfna_ g.9.1.1 (A:) Defensin HNP-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.26 E-value=86 Score=5.99 Aligned_cols=12 Identities=67% Similarity=1.085 Sum_probs=4.5
Q ss_pred CCCCCCCCCCCC
Q ss_conf 788888643223
Q 000759 864 RIPSEDSGERRY 875 (1299)
Q Consensus 864 ~~~~~~~~~~~~ 875 (1299)
|||.--.|||||
T Consensus 5 ripac~agerry 16 (30)
T d1dfna_ 5 RIPACIAGERRY 16 (30)
T ss_dssp ESSCCCTTCCEE
T ss_pred ECCHHHCCCCCE
T ss_conf 454331276420
No 5
>d2bh1a1 c.55.1.11 (A:146-239) Cytoplasmic domain of general secretion pathway protein L, EpsL {Vibrio cholerae [TaxId: 666]}
Probab=3.73 E-value=1e+02 Score=5.50 Aligned_cols=21 Identities=33% Similarity=0.705 Sum_probs=13.7
Q ss_pred CCCCEECCCCC----CCHHHHHHHH
Q ss_conf 88520304899----8846787999
Q 000759 1176 GSEWLFRHNDG----ADEDLIDRVA 1196 (1299)
Q Consensus 1176 gs~wlf~~n~g----~de~lid~va 1196 (1299)
|.+|||||+.+ +|++..+.+.
T Consensus 10 ~~qwLiR~~~~~G~s~e~~wl~~~L 34 (94)
T d2bh1a1 10 GDEWLVRKSTTQGMAVDAQWLSLLA 34 (94)
T ss_dssp TTEEEEEEETTEEEEEEGGGHHHHH
T ss_pred CCEEEEECCCCCEEEECHHHHHHHH
T ss_conf 8999996299818996799999999
No 6
>d1gx5a_ e.8.1.4 (A:) Viral RNA polymerase {Hepatitis C virus [TaxId: 11103]}
Probab=3.26 E-value=1.1e+02 Score=5.30 Aligned_cols=11 Identities=9% Similarity=0.129 Sum_probs=5.3
Q ss_pred CCCHHHHHHHH
Q ss_conf 97399999832
Q 000759 78 GKDLAQICGEE 88 (1299)
Q Consensus 78 Gk~LAEicRe~ 88 (1299)
+.+..|.|+.-
T Consensus 82 ll~~eea~~~~ 92 (530)
T d1gx5a_ 82 LLSVEEACKLT 92 (530)
T ss_dssp CCCHHHHHHTS
T ss_pred CCCHHHHHHCC
T ss_conf 66599997247
No 7
>d2iaya1 d.376.1.1 (A:1-113) Hypothetical protein Lp2179 {Lactobacillus plantarum [TaxId: 1590]}
Probab=2.78 E-value=1.4e+02 Score=4.40 Aligned_cols=55 Identities=22% Similarity=0.178 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 986557876554578888446653000100257998767865557888999878885579999887643
Q 000759 1030 DSVSIPSSSAKKYHSLPDISGLSVPLREQFMSNKGARVDGSIAYKPSIGRPSYEPSLYSNPGSRAGTTL 1098 (1299)
Q Consensus 1030 ~~~~~~~~~~kkyhs~pdis~~~~~~r~~~~~~~~~~~~~~~~~~~~~g~~~ye~s~~~~~~~~~~~~l 1098 (1299)
+..+.-....++|.=+|+| -|=.+.-..= --.-.|+-.||||++.++.+.+|.+|
T Consensus 4 ~ktv~l~Gd~~~Y~isp~i------KkyTL~D~gF--------~~tk~Gnf~l~r~Ld~~~~~~~g~kL 58 (113)
T d2iaya1 4 TTTVKLDGDTKTYTLSPTV------KKYTLMDLGF--------VKGRSGAFSFERSLDPTSPYQAAFKL 58 (113)
T ss_dssp BSEECCTTCSCCEEECTTC------CHHHHHHTTC--------EECTTSCEEEEEEESCSSTTCCSEEE
T ss_pred EEEEEECCCCCEEEECCCC------CEEEEECCCC--------EECCCCCEEEEECCCCCCCCCCCEEE
T ss_conf 0389867974158988631------1377751661--------66267557997215788998876489
No 8
>d1ri9a_ b.34.2.1 (A:) Fyn-binding protein (T-cell adapter protein adap) {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.75 E-value=1e+02 Score=5.44 Aligned_cols=8 Identities=75% Similarity=1.331 Sum_probs=0.0
Q ss_pred CHHHHHHH
Q ss_conf 00444322
Q 000759 1286 GKYTYVLN 1293 (1299)
Q Consensus 1286 gkytyvln 1293 (1299)
|||.||+.
T Consensus 65 GkYGYV~~ 72 (77)
T d1ri9a_ 65 GKYGYVLR 72 (77)
T ss_dssp TEEEEEEG
T ss_pred CCEEEEEE
T ss_conf 96788985
No 9
>d1okja1 c.55.1.9 (A:1-106) Hypothetical protein YeaZ {Escherichia coli [TaxId: 562]}
Probab=2.69 E-value=87 Score=5.95 Aligned_cols=9 Identities=33% Similarity=0.767 Sum_probs=0.0
Q ss_pred CCCCEEECC
Q ss_conf 998513045
Q 000759 690 GPASLRSLS 698 (1299)
Q Consensus 690 gP~S~~s~~ 698 (1299)
||+||+.+|
T Consensus 63 GPGsfTglR 71 (106)
T d1okja1 63 GPGSFTGVR 71 (106)
T ss_dssp ESSCHHHHH
T ss_pred CCCCCCCCH
T ss_conf 367654205
No 10
>d1pjqa3 e.37.1.1 (A:114-215) Siroheme synthase CysG, domains 2 and 3 {Salmonella typhimurium [TaxId: 90371]}
Probab=2.39 E-value=1.4e+02 Score=4.48 Aligned_cols=55 Identities=24% Similarity=0.402 Sum_probs=0.0
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHC
Q ss_conf 8667789985130457779999886676322471078998887889876532100136401787520
Q 000759 684 SALMSDGPASLRSLSGKSDDGGSSVGSLSRLVGLGRAARRQLAGVLDEFWGQLYDYHGQITQEARAK 750 (1299)
Q Consensus 684 ps~~sdgP~S~~s~~gks~d~G~~~gslsrl~glgraarrqla~~ldefwg~l~d~hg~~t~~a~~~ 750 (1299)
||....||=..--+.|. .=+.|-|--|++|.+.+++=||.+-++-|..-.+.|.+
T Consensus 1 PAiv~rg~l~iAISTgG------------~sP~lar~lR~~lE~~lp~~~~~l~~~~~~~R~~vk~~ 55 (102)
T d1pjqa3 1 PSIIDRSPLMVAVSSGG------------TSPVLARLLREKLESLLPQHLGQVARYAGQLRARVKKQ 55 (102)
T ss_dssp CEEEEETTEEEEEECTT------------SCHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHHHHHH
T ss_pred CCEEECCCEEEEEECCC------------CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 97655488579875899------------68599999999999867856999999999999999987
Done!