BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000760
(1297 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 117/262 (44%), Gaps = 51/262 (19%)
Query: 681 APKRGMVLPFTPLAMSF---DSVYYYVD-----------MPPEMKEQGVAEDKLR----- 721
P R +V FT L SF D V+ +D P E+K+ + D +
Sbjct: 292 GPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYND 351
Query: 722 ----LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQET 777
+L ++ + G A +G+SG GK+TL++++ + G I I G K
Sbjct: 352 NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIP--RFYDVTSGQILIDGHNIKDFL 409
Query: 778 FARIS---GYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESL 834
+ G +Q++I TVKE+++ L + + + EEV++ ++ +
Sbjct: 410 TGSLRNQIGLVQQDNILFSD-TVKENIL------LGRPTATD------EEVVEAAKMANA 456
Query: 835 KDAIVGLP-------GVTG--LSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 885
D I+ LP G G LS Q++RL+IA + NP I+ +DE TS LD + +I+
Sbjct: 457 HDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESII 516
Query: 886 MRTVRNTVDTGRTVVCTIHQPS 907
+ + + RT + H+ S
Sbjct: 517 QEAL-DVLSKDRTTLIVAHRLS 537
Score = 38.1 bits (87), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 9/129 (6%)
Query: 108 ATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGI--SGGQKKRVTTGEMIVGPTKT 165
AT E VE++ + + I+ L DT VG+ RG+ SGGQK+R++ + +
Sbjct: 442 ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGE---RGVKLSGGQKQRLSIARIFLNNPPI 498
Query: 166 LFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIV 225
L +DE ++ LD + I + L V D T L ++ T D I+++ G IV
Sbjct: 499 LILDEATSALDLESESIIQEALD--VLSKDRTTL--IVAHRLSTITHADKIVVIENGHIV 554
Query: 226 YQGPRERVL 234
G ++
Sbjct: 555 ETGTHRELI 563
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 100/226 (44%), Gaps = 19/226 (8%)
Query: 733 GVLAALMGVSGAGKTTLMDVLAGRKT---GGYIEGDIRISGFPKKQETFARISGYCEQND 789
G +G SG GK+TL+ ++AG +T G G+ R++ P + R G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE----RGVGMVFQSY 84
Query: 790 IHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSI 849
P ++V E++ + L AK+ ++ V EV+ L L K LS
Sbjct: 85 ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP--------KALSG 136
Query: 850 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR--TVRNTVDTGRTVVCTIHQPS 907
QR+R+ I LVA PS+ +DEP S LDA A + MR R GRT++ H
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYVTHD-Q 194
Query: 908 IDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVIEYYEAIPGVPKIK 953
++ D++++L G PL + + G PK+
Sbjct: 195 VEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKMN 240
Score = 38.1 bits (87), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 139 DEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATI 198
D + +SGGQ++RV G +V +DE + LD++ Q+ + ++ H
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRL-HKRLGRT 186
Query: 199 LMSLLQPAPETFDLFDDIILLSEGQIVYQG 228
++ + E L D I++L G++ G
Sbjct: 187 MIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 100/226 (44%), Gaps = 19/226 (8%)
Query: 733 GVLAALMGVSGAGKTTLMDVLAGRKT---GGYIEGDIRISGFPKKQETFARISGYCEQND 789
G +G SG GK+TL+ ++AG +T G G+ R++ P + R G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE----RGVGMVFQSY 84
Query: 790 IHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSI 849
P ++V E++ + L AK+ ++ V EV+ L L K LS
Sbjct: 85 ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP--------KALSG 136
Query: 850 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR--TVRNTVDTGRTVVCTIHQPS 907
QR+R+ I LVA PS+ +DEP S LDA A + MR R GRT++ H
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYVTHD-Q 194
Query: 908 IDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVIEYYEAIPGVPKIK 953
++ D++++L G PL + + G PK+
Sbjct: 195 VEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKMN 240
Score = 38.1 bits (87), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 139 DEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATI 198
D + +SGGQ++RV G +V +DE + LD++ Q+ + ++ H
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRL-HKRLGRT 186
Query: 199 LMSLLQPAPETFDLFDDIILLSEGQIVYQG 228
++ + E L D I++L G++ G
Sbjct: 187 MIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 100/226 (44%), Gaps = 19/226 (8%)
Query: 733 GVLAALMGVSGAGKTTLMDVLAGRKT---GGYIEGDIRISGFPKKQETFARISGYCEQND 789
G +G SG GK+TL+ ++AG +T G G+ R++ P + R G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE----RGVGMVFQSY 84
Query: 790 IHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSI 849
P ++V E++ + L AK+ ++ V EV+ L L K LS
Sbjct: 85 ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP--------KALSG 136
Query: 850 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR--TVRNTVDTGRTVVCTIHQPS 907
QR+R+ I LVA PS+ +D+P S LDA A + MR R GRT++ H
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDQPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYVTHD-Q 194
Query: 908 IDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVIEYYEAIPGVPKIK 953
++ D++++L G PL + + G PK+
Sbjct: 195 VEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKMN 240
Score = 37.0 bits (84), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 139 DEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATI 198
D + +SGGQ++RV G +V +D+ + LD++ Q+ + ++ H
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRL-HKRLGRT 186
Query: 199 LMSLLQPAPETFDLFDDIILLSEGQIVYQG 228
++ + E L D I++L G++ G
Sbjct: 187 MIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 95/190 (50%), Gaps = 16/190 (8%)
Query: 719 KLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIRISGFPKKQ 775
K++ ++ V+ + G AL+G SG GKTT + +LAG + T G I D+ ++ P K
Sbjct: 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK- 73
Query: 776 ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLK 835
R G QN P +TV E++ AF A+ +SK++ V E+ + +++L
Sbjct: 74 ---YREVGMVFQNYALYPHMTVFENI---AFPLRARRISKDEVEKRVVEIARKLLIDNLL 127
Query: 836 DAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVD 894
D T LS Q++R+ +A LV P ++ DEP S LDA I+ +++ +
Sbjct: 128 DR-----KPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQE 182
Query: 895 TGRTVVCTIH 904
G T V H
Sbjct: 183 LGITSVYVTH 192
Score = 33.5 bits (75), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 53/111 (47%), Gaps = 10/111 (9%)
Query: 129 LDICKDTIVGDEMNRG---ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQI-- 183
++I + ++ + ++R +SGGQ++RV +V K L DE + LD++ +
Sbjct: 115 VEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRA 174
Query: 184 -VKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERV 233
+K LQQ + +T + E + I + ++G++V G + V
Sbjct: 175 EIKHLQQELGITSVYVTHD----QAEAMTMASRIAVFNQGKLVQYGTPDEV 221
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 98/205 (47%), Gaps = 18/205 (8%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARI 781
+L +V + F G + ++G +G+GKTTL+ +LAG G+I + G P +
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAA---GEIFLDGSPADPFLLRKN 82
Query: 782 SGYCEQNDIHSPQV---TVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAI 838
GY QN S Q+ TV+E + +S + E +I ++V++LV L L A
Sbjct: 83 VGYVFQN--PSSQIIGATVEEDVAFSLEIMGLDESEMRKRI---KKVLELVGLSGLAAA- 136
Query: 839 VGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 898
LS Q++RL IA L + + +DEP S LD + + + + + + G+
Sbjct: 137 ----DPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKG 192
Query: 899 VVCTIHQPSIDIFEAFDELLLLKRG 923
++ H+ ++ + D +L + G
Sbjct: 193 IILVTHE--LEYLDDMDFILHISNG 215
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 85/210 (40%), Gaps = 43/210 (20%)
Query: 27 LKVRGEITYNGYRLNEFVPQKTSAYISQN-DVHVGEMTVKETLDFSARCLGVGTRYELLS 85
L GEI +G + F+ +K Y+ QN + TV+E + FS +G+ S
Sbjct: 61 LAAAGEIFLDGSPADPFLLRKNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDE-----S 115
Query: 86 ELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGI 145
E+ +R K K+L L D +N +
Sbjct: 116 EMRKRIK--------------------------------KVLELVGLSGLAAADPLN--L 141
Query: 146 SGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQP 205
SGGQK+R+ M+ T+ L +DE + LD + +I + L+ + + IL++
Sbjct: 142 SGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVT---H 198
Query: 206 APETFDLFDDIILLSEGQIVYQGPRERVLE 235
E D D I+ +S G I + G E +E
Sbjct: 199 ELEYLDDMDFILHISNGTIDFCGSWEEFVE 228
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 100/207 (48%), Gaps = 15/207 (7%)
Query: 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISG---FPKKQET 777
R L + G AL+G +G+GK+T+ +L EGDI+I G + +
Sbjct: 34 RTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA---EGDIKIGGKNVNKYNRNS 90
Query: 778 FARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLK-D 836
I G Q+ I + T+K +++Y +EV K K ++ D +E K D
Sbjct: 91 IRSIIGIVPQDTILFNE-TIKYNILYGKLDATDEEVIKATK---SAQLYDFIEALPKKWD 146
Query: 837 AIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 896
IVG G+ LS +R+R+ IA L+ +P I+ DE TS LD++ + + V + +
Sbjct: 147 TIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVED-LRKN 204
Query: 897 RTVVCTIHQPSIDIFEAFDELLLLKRG 923
RT++ H+ S + + ++LL +G
Sbjct: 205 RTLIIIAHRLS--TISSAESIILLNKG 229
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 9/105 (8%)
Query: 134 DTIVGDEMNRG--ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIV 191
DTIVG N+G +SGG+++R+ ++ K + DE ++ LDS T Y K ++ +
Sbjct: 146 DTIVG---NKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR 202
Query: 192 HVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEF 236
I+ L T + IILL++G+IV +G + +L+
Sbjct: 203 KNRTLIIIAHRLS----TISSAESIILLNKGKIVEKGTHKDLLKL 243
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 103/211 (48%), Gaps = 24/211 (11%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYI--EGDIRISGFP---KKQE 776
+L+ + + + G + ++G SG+GK+TL ++ YI G + I G
Sbjct: 20 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF----YIPENGQVLIDGHDLALADPN 75
Query: 777 TFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMD----LVELE 832
R G Q++ V + S+I + + LA +K+I+ ++ + EL
Sbjct: 76 WLRRQVGVVLQDN-----VLLNRSIIDN--ISLANPGMSVEKVIYAAKLAGAHDFISELR 128
Query: 833 SLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 892
+ IVG G GLS QR+R+ IA LV NP I+ DE TS LD + ++MR + +
Sbjct: 129 EGYNTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM-HK 186
Query: 893 VDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 923
+ GRTV+ H+ S + D ++++++G
Sbjct: 187 ICKGRTVIIIAHRLS--TVKNADRIIVMEKG 215
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 134 DTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHV 193
+TIVG E G+SGGQ++R+ +V K L DE ++ LD + + I++ + +I
Sbjct: 132 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKG 190
Query: 194 TDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFESC 240
I+ L T D II++ +G+IV QG + +L ES
Sbjct: 191 RTVIIIAHRL----STVKNADRIIVMEKGKIVEQGKHKELLSEPESL 233
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 113/223 (50%), Gaps = 24/223 (10%)
Query: 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ- 775
+D ++L +++ +P + A G SG GK+T+ +L + G+I I G P
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL--ERFYQPTAGEITIDGQPIDNI 69
Query: 776 --ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVE--- 830
E + G+ Q D T++E+L Y L + + ED + +V+DL
Sbjct: 70 SLENWRSQIGFVSQ-DSAIMAGTIRENLTYG----LEGDYTDED----LWQVLDLAFARS 120
Query: 831 -LESLKDAIVGLPGVTGLSIE--QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 887
+E++ D + G G+ I QR+RL IA + NP I+ +DE T+ LD+ + ++V +
Sbjct: 121 FVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQK 180
Query: 888 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930
+ +++ GRT + H+ S I +A D++ +++ GQ+ SG
Sbjct: 181 AL-DSLMKGRTTLVIAHRLST-IVDA-DKIYFIEK-GQITGSG 219
Score = 36.6 bits (83), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 17/143 (11%)
Query: 105 FMKATAMEGVESSLITDYT----LKILGLDICKDTI--VGDEMN-----RG--ISGGQKK 151
M T E + L DYT ++L L + + + D++N RG ISGGQ++
Sbjct: 87 IMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQ 146
Query: 152 RVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFD 211
R+ + K L +DE + LDS + + K L ++ ++ L +
Sbjct: 147 RLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDA-- 204
Query: 212 LFDDIILLSEGQIVYQGPRERVL 234
D I + +GQI G ++
Sbjct: 205 --DKIYFIEKGQITGSGKHNELV 225
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 103/211 (48%), Gaps = 24/211 (11%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYI--EGDIRISGFP---KKQE 776
+L+ + + + G + ++G SG+GK+TL ++ YI G + I G
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF----YIPENGQVLIDGHDLALADPN 73
Query: 777 TFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMD----LVELE 832
R G Q++ V + S+I + + LA +K+I+ ++ + EL
Sbjct: 74 WLRRQVGVVLQDN-----VLLNRSIIDN--ISLANPGMSVEKVIYAAKLAGAHDFISELR 126
Query: 833 SLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 892
+ IVG G GLS QR+R+ IA LV NP I+ DE TS LD + ++MR + +
Sbjct: 127 EGYNTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM-HK 184
Query: 893 VDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 923
+ GRTV+ H+ S + D ++++++G
Sbjct: 185 ICKGRTVIIIAHRLS--TVKNADRIIVMEKG 213
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 134 DTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHV 193
+TIVG E G+SGGQ++R+ +V K L DE ++ LD + + I++ + +I
Sbjct: 130 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKG 188
Query: 194 TDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFESC 240
I+ L T D II++ +G+IV QG + +L ES
Sbjct: 189 RTVIIIAHRL----STVKNADRIIVMEKGKIVEQGKHKELLSEPESL 231
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 103/211 (48%), Gaps = 24/211 (11%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYI--EGDIRISGFP---KKQE 776
+L+ + + + G + ++G SG+GK+TL ++ YI G + I G
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF----YIPENGQVLIDGHDLALADPN 79
Query: 777 TFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMD----LVELE 832
R G Q++ V + S+I + + LA +K+I+ ++ + EL
Sbjct: 80 WLRRQVGVVLQDN-----VLLNRSIIDN--ISLANPGMSVEKVIYAAKLAGAHDFISELR 132
Query: 833 SLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 892
+ IVG G GLS QR+R+ IA LV NP I+ DE TS LD + ++MR + +
Sbjct: 133 EGYNTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM-HK 190
Query: 893 VDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 923
+ GRTV+ H+ S + D ++++++G
Sbjct: 191 ICKGRTVIIIAHRLS--TVKNADRIIVMEKG 219
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 134 DTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHV 193
+TIVG E G+SGGQ++R+ +V K L DE ++ LD + + I++ + +I
Sbjct: 136 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKG 194
Query: 194 TDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFESC 240
I+ L T D II++ +G+IV QG + +L ES
Sbjct: 195 RTVIIIAHRL----STVKNADRIIVMEKGKIVEQGKHKELLSEPESL 237
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 60.5 bits (145), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 103/211 (48%), Gaps = 24/211 (11%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYI--EGDIRISGFP---KKQE 776
+L+ + + + G + ++G +G+GK+TL ++ YI G + I G
Sbjct: 20 ILDNINLSIKQGEVIGIVGRAGSGKSTLTKLI----QRFYIPENGQVLIDGHDLALADPN 75
Query: 777 TFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMD----LVELE 832
R G Q++ V + S+I + + LA +K+I+ ++ + EL
Sbjct: 76 WLRRQVGVVLQDN-----VLLNRSIIDN--ISLANPGMSVEKVIYAAKLAGAHDFISELR 128
Query: 833 SLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 892
+ IVG G GLS QR+R+ IA LV NP I+ DE TS LD + ++MR + +
Sbjct: 129 EGYNTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM-HK 186
Query: 893 VDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 923
+ GRTV+ H+ S + D ++++++G
Sbjct: 187 ICKGRTVIIIAHRLS--TVKNADRIIVMEKG 215
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 134 DTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHV 193
+TIVG E G+SGGQ++R+ +V K L DE ++ LD + + I++ + +I
Sbjct: 132 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKG 190
Query: 194 TDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFESC 240
I+ L T D II++ +G+IV QG + +L ES
Sbjct: 191 RTVIIIAHRL----STVKNADRIIVMEKGKIVEQGKHKELLSEPESL 233
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 103/211 (48%), Gaps = 24/211 (11%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYI--EGDIRISGFP---KKQE 776
+L+ + + + G + ++G SG+GK+TL ++ YI G + I G
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF----YIPENGQVLIDGHDLALADPN 79
Query: 777 TFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMD----LVELE 832
R G Q++ V + S+I + + LA +K+I+ ++ + EL
Sbjct: 80 WLRRQVGVVLQDN-----VLLNRSIIDN--ISLANPGMSVEKVIYAAKLAGAHDFISELR 132
Query: 833 SLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 892
+ IVG G GLS QR+R+ IA LV NP I+ D+ TS LD + ++MR + +
Sbjct: 133 EGYNTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNM-HK 190
Query: 893 VDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 923
+ GRTV+ H+ S + D ++++++G
Sbjct: 191 ICKGRTVIIIAHRLS--TVKNADRIIVMEKG 219
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 134 DTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHV 193
+TIVG E G+SGGQ++R+ +V K L D+ ++ LD + + I++ + +I
Sbjct: 136 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKICKG 194
Query: 194 TDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFESC 240
I+ L T D II++ +G+IV QG + +L ES
Sbjct: 195 RTVIIIAHRL----STVKNADRIIVMEKGKIVEQGKHKELLSEPESL 237
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 59.3 bits (142), Expect = 1e-08, Method: Composition-based stats.
Identities = 56/223 (25%), Positives = 103/223 (46%), Gaps = 15/223 (6%)
Query: 711 KEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLA--GRKTGG--YIEGDI 766
K + E+ + L V + G ++MG SG+GK+T+++++ + T G YI+ +I
Sbjct: 9 KTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYID-NI 67
Query: 767 RISGFPKKQETFARIS--GYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEE 824
+ + + T R G+ Q P +T E++ + +S E++ E
Sbjct: 68 KTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALE 127
Query: 825 VMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 884
+ + ELE LS Q++R+ IA L NP II D+PT LD++
Sbjct: 128 CLKMAELEER----FANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEK 183
Query: 885 VMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQV 926
+M+ ++ + G+TVV H ++ F E ++ + G+V
Sbjct: 184 IMQLLKKLNEEDGKTVVVVTHDINV---ARFGERIIYLKDGEV 223
Score = 36.6 bits (83), Expect = 0.084, Method: Composition-based stats.
Identities = 39/165 (23%), Positives = 71/165 (43%), Gaps = 19/165 (11%)
Query: 86 ELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDY------------TLKILGLDICK 133
EL + +D F + +L TA+E VE LI Y L+ L + +
Sbjct: 76 ELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELE 135
Query: 134 DTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHV 193
+ + N+ +SGGQ++RV + + D+ + LDS T +I++ L+++
Sbjct: 136 ERFANHKPNQ-LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEE 194
Query: 194 TDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFE 238
T+++ F + II L +G++ RE L F+
Sbjct: 195 DGKTVVVVTHDINVARFG--ERIIYLKDGEV----EREEKLRGFD 233
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 17/207 (8%)
Query: 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIRISGFPKKQET 777
R + V+ R G + L+G SG+GKTT++ ++AG R T G + G R++ P ++
Sbjct: 29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK-- 86
Query: 778 FARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDA 837
R G QN +TV +++ + LR K V K++ V E++ + LES +
Sbjct: 87 --RNVGLVFQNYALFQHMTVYDNVSFG--LR-EKRVPKDEMDARVRELLRFMRLESYANR 141
Query: 838 IVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-G 896
LS Q++R+ +A L P ++ DEP + +D + + VR D G
Sbjct: 142 F-----PHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMG 196
Query: 897 RTVVCTIHQPSIDIFEAFDELLLLKRG 923
T V H + E D +L+L G
Sbjct: 197 VTSVFVTHDQE-EALEVADRVLVLHEG 222
Score = 35.0 bits (79), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 145 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQ 204
+SGGQ++RV + + L DE +D+ ++ ++Q VH + +
Sbjct: 146 LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQ-VHDEMGVTSVFVTH 204
Query: 205 PAPETFDLFDDIILLSEGQIVYQGPRERVLE 235
E ++ D +++L EG + G E V E
Sbjct: 205 DQEEALEVADRVLVLHEGNVEQFGTPEEVYE 235
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 82/162 (50%), Gaps = 19/162 (11%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIR-ISGFPKKQETFA 779
LN + + G AL+G SG+GK+TL+ +AG + T G I D + ++ P K
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKD---- 74
Query: 780 RISGYCEQNDIHSPQVTVKESLIYSAFLRLA--KEVSKEDKIIFVEEVMDLVELESLKDA 837
R G QN P +TV +++ + LR A +E+ K+ V EV ++ ++ L +
Sbjct: 75 RNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKK-----VREVAKMLHIDKLLNR 129
Query: 838 IVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDA 879
LS Q++R+ IA LV P ++ +DEP S LDA
Sbjct: 130 YP-----WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA 166
Score = 34.7 bits (78), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 7/92 (7%)
Query: 145 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQI---VKCLQQIVHVTDATILMS 201
+SGGQ++RV +V + L +DE + LD+ ++ +K LQ+ + +T T+ ++
Sbjct: 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGIT--TVYVT 191
Query: 202 LLQPAPETFDLFDDIILLSEGQIVYQGPRERV 233
Q E + D I ++ EG+I+ G + V
Sbjct: 192 HDQ--AEALAMADRIAVIREGEILQVGTPDEV 221
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 108/220 (49%), Gaps = 18/220 (8%)
Query: 719 KLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRK--TGGYIEGDIRISGFPKKQ- 775
K+ L+ V G ++G SGAGKTT M ++AG + G + D R+ K
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 776 -ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESL 834
R G Q P +T E++ AF ++SKE+ VEEV ++++ +
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENI---AFPLTNMKMSKEEIRKRVEEVAKILDIHHV 133
Query: 835 KDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDAR---AAAIVMRTVRN 891
+ P LS Q++R+ +A LV +PS++ +DEP S LDAR +A +++ V++
Sbjct: 134 LNH---FP--RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188
Query: 892 TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGP 931
+ G T++ H P+ DIF D + +L +G V P
Sbjct: 189 RL--GVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKP 225
Score = 33.1 bits (74), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 143 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSL 202
R +SG Q++RV +V L +DE + LD+ ++++ T+L+
Sbjct: 139 RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVS 198
Query: 203 LQPAPETFDLFDDIILLSEGQIVYQGPRE 231
PA + F + D + +L +G++V G E
Sbjct: 199 HDPA-DIFAIADRVGVLVKGKLVQVGKPE 226
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 108/220 (49%), Gaps = 18/220 (8%)
Query: 719 KLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRK--TGGYIEGDIRISGFPKKQ- 775
K+ L+ V G ++G SGAGKTT M ++AG + G + D R+ K
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 776 -ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESL 834
R G Q P +T E++ AF ++SKE+ VEEV ++++ +
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENI---AFPLTNMKMSKEEIRKRVEEVAKILDIHHV 133
Query: 835 KDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDAR---AAAIVMRTVRN 891
+ P LS Q++R+ +A LV +PS++ +DEP S LDAR +A +++ V++
Sbjct: 134 LNH---FP--RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188
Query: 892 TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGP 931
+ G T++ H P+ DIF D + +L +G V P
Sbjct: 189 RL--GVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKP 225
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 143 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSL 202
R +SGGQ++RV +V L +DE + LD+ ++++ T+L+
Sbjct: 139 RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVS 198
Query: 203 LQPAPETFDLFDDIILLSEGQIVYQGPRE 231
PA + F + D + +L +G++V G E
Sbjct: 199 HDPA-DIFAIADRVGVLVKGKLVQVGKPE 226
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 102/211 (48%), Gaps = 24/211 (11%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYI--EGDIRISGFP---KKQE 776
+L+ + + + G + ++G SG+GK+TL ++ YI G + I G
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF----YIPENGQVLIDGHDLALADPN 73
Query: 777 TFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMD----LVELE 832
R G Q++ V + S+I + + LA +K+I+ ++ + EL
Sbjct: 74 WLRRQVGVVLQDN-----VLLNRSIIDN--ISLANPGMSVEKVIYAAKLAGAHDFISELR 126
Query: 833 SLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 892
+ IVG G GLS QR+R+ IA LV NP I+ DE TS LD + ++MR + +
Sbjct: 127 EGYNTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM-HK 184
Query: 893 VDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 923
+ GRTV+ I + + D ++++++G
Sbjct: 185 ICKGRTVI--IIAARLSTVKNADRIIVMEKG 213
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
Query: 134 DTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHV 193
+TIVG E G+SGGQ++R+ +V K L DE ++ LD + + I++ + +I
Sbjct: 130 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKG 188
Query: 194 TDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFES 239
I+ + L T D II++ +G+IV QG + +L ES
Sbjct: 189 RTVIIIAARL----STVKNADRIIVMEKGKIVEQGKHKELLSEPES 230
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 102/211 (48%), Gaps = 24/211 (11%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYI--EGDIRISGFP---KKQE 776
+L+ + + + G + ++G SG+GK+TL ++ YI G + I G
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF----YIPENGQVLIDGHDLALADPN 79
Query: 777 TFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMD----LVELE 832
R G Q++ V + S+I + + LA +K+I+ ++ + EL
Sbjct: 80 WLRRQVGVVLQDN-----VLLNRSIIDN--ISLANPGMSVEKVIYAAKLAGAHDFISELR 132
Query: 833 SLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 892
+ IVG G GLS QR+R+ IA LV NP I+ DE TS LD + ++MR + +
Sbjct: 133 EGYNTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM-HK 190
Query: 893 VDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 923
+ GRTV+ I + + D ++++++G
Sbjct: 191 ICKGRTVI--IIAARLSTVKNADRIIVMEKG 219
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
Query: 134 DTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHV 193
+TIVG E G+SGGQ++R+ +V K L DE ++ LD + + I++ + +I
Sbjct: 136 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKG 194
Query: 194 TDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFES 239
I+ + L T D II++ +G+IV QG + +L ES
Sbjct: 195 RTVIIIAARL----STVKNADRIIVMEKGKIVEQGKHKELLSEPES 236
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 104/212 (49%), Gaps = 35/212 (16%)
Query: 733 GVLAALMGVSGAGKTTLM-------DVLAGRKTGGYIEG-DIRISGFPKKQETFARISGY 784
G AL+G SG GK+T++ DVL G+ T I+G D+R ++ A +S
Sbjct: 444 GQTVALVGSSGCGKSTIISLLLRYYDVLKGKIT---IDGVDVRDINLEFLRKNVAVVS-- 498
Query: 785 CEQNDIHSPQV---TVKESLIYSAFLRLAKE-VSKEDKIIFVEEVMDLVELESLKDAIVG 840
P + T++E++ L KE +++E+ + + +++L +
Sbjct: 499 ------QEPALFNCTIEENI------SLGKEGITREEMVAACKMANAEKFIKTLPNGYNT 546
Query: 841 LPGVTG--LSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 898
L G G LS Q++R+ IA LV NP I+ +DE TS LDA + IV + + + GRT
Sbjct: 547 LVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQAL-DKAAKGRT 605
Query: 899 VVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930
+ H+ S I A +L++ + GQV+ G
Sbjct: 606 TIIIAHRLST-IRNA--DLIISCKNGQVVEVG 634
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 97/197 (49%), Gaps = 22/197 (11%)
Query: 719 KLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK---- 774
++ +L ++ + PG AL+G SG GK+T++ +L + + G+I I G K
Sbjct: 1091 EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALL--ERFYDTLGGEIFIDGSEIKTLNP 1148
Query: 775 QETFARISGYCEQNDIHSPQVTVKESLIY-----SAFLRLAKEVSKEDKII-FVEEVMDL 828
+ T ++I+ ++ + ++ E++IY S + +E ++ I F+ E+ +
Sbjct: 1149 EHTRSQIAIVSQEPTLF--DCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEG 1206
Query: 829 VELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 888
E VG G T LS Q++R+ IA LV NP I+ +DE TS LD + +V
Sbjct: 1207 FETR------VGDRG-TQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEA 1259
Query: 889 VRNTVDTGRTVVCTIHQ 905
+ + GRT + H+
Sbjct: 1260 L-DRAREGRTCIVIAHR 1275
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 5/101 (4%)
Query: 134 DTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHV 193
+T+VGD + +SGGQK+R+ +V K L +DE ++ LD+ + + + L +
Sbjct: 545 NTLVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKG 603
Query: 194 TDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234
I+ L T D II GQ+V G ++
Sbjct: 604 RTTIIIAHRLS----TIRNADLIISCKNGQVVEVGDHRALM 640
Score = 37.4 bits (85), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 134 DTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHV 193
+T VGD + +SGGQK+R+ +V K L +DE ++ LD+ + + + L +
Sbjct: 1208 ETRVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREG 1266
Query: 194 TDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234
++ L D I ++S G I+ +G +++
Sbjct: 1267 RTCIVIAHRLNTVMNA----DCIAVVSNGTIIEKGTHTQLM 1303
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 104/231 (45%), Gaps = 42/231 (18%)
Query: 716 AEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTT-------LMDVLAGRKTGGYIEG-DIR 767
+ ++++L + + G AL+G SG GK+T L D L G + I+G DIR
Sbjct: 399 SRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVS---IDGQDIR 455
Query: 768 ISGFPKKQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMD 827
+E +S +E ++++ + +ED + ++E+
Sbjct: 456 TINVRYLREIIGVVS---------------QEPVLFATTIAENIRYGRED--VTMDEIEK 498
Query: 828 LVELESLKDAIVGLP-------GVTG--LSIEQRKRLTIAVELVANPSIIFMDEPTSGLD 878
V+ + D I+ LP G G LS Q++R+ IA LV NP I+ +DE TS LD
Sbjct: 499 AVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALD 558
Query: 879 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSI----DIFEAFDELLLLKRGGQ 925
+ A+V + + GRT + H+ S D+ FD +++++G
Sbjct: 559 TESEAVVQAAL-DKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNH 608
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 89/192 (46%), Gaps = 14/192 (7%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARI 781
+L ++ + G AL+G SG GK+T++ +L + + G + + G KQ +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL--ERFYDPMAGSVFLDGKEIKQLNVQWL 1105
Query: 782 S---GYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAI 838
G Q I ++ E++ Y R+ VS E+ + +E ++SL D
Sbjct: 1106 RAQLGIVSQEPILF-DCSIAENIAYGDNSRV---VSYEEIVRAAKEANIHQFIDSLPDKY 1161
Query: 839 ---VGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 895
VG G T LS Q++R+ IA LV P I+ +DE TS LD + +V + +
Sbjct: 1162 NTRVGDKG-TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEAL-DKARE 1219
Query: 896 GRTVVCTIHQPS 907
GRT + H+ S
Sbjct: 1220 GRTCIVIAHRLS 1231
Score = 37.4 bits (85), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Query: 134 DTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHV 193
+T VGD+ + +SGGQK+R+ +V L +DE ++ LD+ + + + L +
Sbjct: 1162 NTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREG 1220
Query: 194 TDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234
++ L T D I+++ G++ G +++L
Sbjct: 1221 RTCIVIAHRL----STIQNADLIVVIQNGKVKEHGTHQQLL 1257
Score = 37.0 bits (84), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
Query: 134 DTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHV 193
DT+VG E +SGGQK+R+ +V K L +DE ++ LD+ + + L +
Sbjct: 517 DTLVG-ERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREG 575
Query: 194 TDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234
++ L D I G IV QG + ++
Sbjct: 576 RTTIVIAHRLSTVRNA----DVIAGFDGGVIVEQGNHDELM 612
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 104/231 (45%), Gaps = 42/231 (18%)
Query: 716 AEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTT-------LMDVLAGRKTGGYIEG-DIR 767
+ ++++L + + G AL+G SG GK+T L D L G + I+G DIR
Sbjct: 399 SRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVS---IDGQDIR 455
Query: 768 ISGFPKKQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMD 827
+E +S +E ++++ + +ED + ++E+
Sbjct: 456 TINVRYLREIIGVVS---------------QEPVLFATTIAENIRYGRED--VTMDEIEK 498
Query: 828 LVELESLKDAIVGLP-------GVTG--LSIEQRKRLTIAVELVANPSIIFMDEPTSGLD 878
V+ + D I+ LP G G LS Q++R+ IA LV NP I+ +DE TS LD
Sbjct: 499 AVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALD 558
Query: 879 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSI----DIFEAFDELLLLKRGGQ 925
+ A+V + + GRT + H+ S D+ FD +++++G
Sbjct: 559 TESEAVVQAAL-DKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNH 608
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 89/192 (46%), Gaps = 14/192 (7%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARI 781
+L ++ + G AL+G SG GK+T++ +L + + G + + G KQ +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL--ERFYDPMAGSVFLDGKEIKQLNVQWL 1105
Query: 782 S---GYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAI 838
G Q I ++ E++ Y R+ VS E+ + +E ++SL D
Sbjct: 1106 RAQLGIVSQEPILF-DCSIAENIAYGDNSRV---VSYEEIVRAAKEANIHQFIDSLPDKY 1161
Query: 839 ---VGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 895
VG G T LS Q++R+ IA LV P I+ +DE TS LD + +V + +
Sbjct: 1162 NTRVGDKG-TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEAL-DKARE 1219
Query: 896 GRTVVCTIHQPS 907
GRT + H+ S
Sbjct: 1220 GRTCIVIAHRLS 1231
Score = 37.4 bits (85), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Query: 134 DTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHV 193
+T VGD+ + +SGGQK+R+ +V L +DE ++ LD+ + + + L +
Sbjct: 1162 NTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREG 1220
Query: 194 TDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234
++ L T D I+++ G++ G +++L
Sbjct: 1221 RTCIVIAHRL----STIQNADLIVVIQNGKVKEHGTHQQLL 1257
Score = 37.0 bits (84), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
Query: 134 DTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHV 193
DT+VG E +SGGQK+R+ +V K L +DE ++ LD+ + + L +
Sbjct: 517 DTLVG-ERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREG 575
Query: 194 TDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234
++ L D I G IV QG + ++
Sbjct: 576 RTTIVIAHRLSTVRNA----DVIAGFDGGVIVEQGNHDELM 612
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 93/216 (43%), Gaps = 16/216 (7%)
Query: 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISG--FPKKQET 777
L +L + R G + ++G SG+GK+T + L + + EG+I I G K
Sbjct: 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINLKAKDTN 94
Query: 778 FARIS---GYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESL 834
++ G Q P +TV ++ + +V K + + M+L++ L
Sbjct: 95 LNKVREEVGMVFQRFNLFPHMTVLNNITLAPM-----KVRKWPREKAEAKAMELLDKVGL 149
Query: 835 KDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 894
KD P LS Q +R+ IA L P I+ DEPTS LD V+ ++ +
Sbjct: 150 KDKAHAYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN 207
Query: 895 TGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930
G T+V H+ E D +L + GG +I G
Sbjct: 208 EGMTMVVVTHEMGF-AREVGDRVLFMD-GGYIIEEG 241
Score = 34.3 bits (77), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 51/113 (45%), Gaps = 10/113 (8%)
Query: 145 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQ 204
+SGGQ +RV + K + DE ++ LD +++ ++Q+ + + ++ +
Sbjct: 160 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN--EGMTMVVVTH 217
Query: 205 PAPETFDLFDDIILLSEGQIVYQGPRERVLEFFESCGFCCPERKGTADFLQEV 257
++ D ++ + G I+ +G E + F P+ + T FL +V
Sbjct: 218 EMGFAREVGDRVLFMDGGYIIEEGKPEDL--------FDRPQHERTKAFLSKV 262
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 101/216 (46%), Gaps = 14/216 (6%)
Query: 715 VAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLA--GRKTGG--YIEGDIRISG 770
+ E+ + L V + G ++MG SG+GK+T+++++ + T G YI+ +I+ +
Sbjct: 13 MGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYID-NIKTND 71
Query: 771 FPKKQETFARIS--GYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDL 828
+ T R G+ Q P +T E++ + +S E++ E + +
Sbjct: 72 LDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKM 131
Query: 829 VELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 888
ELE LS Q++R+ IA L NP II D+PT LD++ +M+
Sbjct: 132 AELEER----FANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQL 187
Query: 889 VRN-TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 923
++ + G+TVV H I++ + ++ LK G
Sbjct: 188 LKKLNEEDGKTVVVVTH--DINVARFGERIIYLKDG 221
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 21/163 (12%)
Query: 89 RREKDAGIFPEAEIDLFMKATAMEGVESSLITDY------------TLKILGLDICKDTI 136
RR+K +F + +L TA+E VE LI Y L+ L + ++
Sbjct: 81 RRDKIGFVF--QQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF 138
Query: 137 VGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDA 196
+ N+ +SGGQ++RV + + D+ + LDS T +I++ L+++
Sbjct: 139 ANHKPNQ-LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGK 197
Query: 197 TILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFES 239
T+++ F + II L +G++ RE L F+
Sbjct: 198 TVVVVTHDINVARFG--ERIIYLKDGEV----EREEKLRGFDD 234
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 93/204 (45%), Gaps = 15/204 (7%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRK--TGGYIE-GDIRISGFPKKQETFA 779
+N++ + G L+G SG GKTT + ++AG + T G I GD ++ P K +
Sbjct: 28 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 87
Query: 780 RISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIV 839
+ Q+ P +TV E++ + ++ + + ++ + E++ + EL + A
Sbjct: 88 MVF----QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA-- 141
Query: 840 GLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 899
LS QR+R+ +A +V P ++ MDEP S LDA+ + ++ +
Sbjct: 142 ------QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVT 195
Query: 900 VCTIHQPSIDIFEAFDELLLLKRG 923
+ ++ D + ++ RG
Sbjct: 196 TIYVTHDQVEAMTMGDRIAVMNRG 219
Score = 37.0 bits (84), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 145 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQI---VKCLQQIVHVTDATILMS 201
+SGGQ++RV IV L MDE + LD+ + +K LQQ + VT TI ++
Sbjct: 143 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVT--TIYVT 200
Query: 202 LLQPAPETFDLFDDIILLSEGQIVYQG 228
Q E + D I +++ GQ++ G
Sbjct: 201 HDQ--VEAMTMGDRIAVMNRGQLLQIG 225
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 93/204 (45%), Gaps = 15/204 (7%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRK--TGGYIE-GDIRISGFPKKQETFA 779
+N++ + G L+G SG GKTT + ++AG + T G I GD ++ P K +
Sbjct: 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 86
Query: 780 RISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIV 839
+ Q+ P +TV E++ + ++ + + ++ + E++ + EL + A
Sbjct: 87 MVF----QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA-- 140
Query: 840 GLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 899
LS QR+R+ +A +V P ++ MDEP S LDA+ + ++ +
Sbjct: 141 ------QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVT 194
Query: 900 VCTIHQPSIDIFEAFDELLLLKRG 923
+ ++ D + ++ RG
Sbjct: 195 TIYVTHDQVEAMTMGDRIAVMNRG 218
Score = 37.0 bits (84), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 145 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQI---VKCLQQIVHVTDATILMS 201
+SGGQ++RV IV L MDE + LD+ + +K LQQ + VT TI ++
Sbjct: 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVT--TIYVT 199
Query: 202 LLQPAPETFDLFDDIILLSEGQIVYQG 228
Q E + D I +++ GQ++ G
Sbjct: 200 HDQ--VEAMTMGDRIAVMNRGQLLQIG 224
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 93/216 (43%), Gaps = 16/216 (7%)
Query: 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISG--FPKKQET 777
L +L + R G + ++G SG+GK+T + L + + EG+I I G K
Sbjct: 16 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINLKAKDTN 73
Query: 778 FARIS---GYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESL 834
++ G Q P +TV ++ + +V K + + M+L++ L
Sbjct: 74 LNKVREEVGMVFQRFNLFPHMTVLNNITLAPM-----KVRKWPREKAEAKAMELLDKVGL 128
Query: 835 KDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 894
KD P LS Q +R+ IA L P I+ DEPTS LD V+ ++ +
Sbjct: 129 KDKAHAYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN 186
Query: 895 TGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930
G T+V H+ E D +L + GG +I G
Sbjct: 187 EGMTMVVVTHEMGF-AREVGDRVLFMD-GGYIIEEG 220
Score = 33.9 bits (76), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 51/113 (45%), Gaps = 10/113 (8%)
Query: 145 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQ 204
+SGGQ +RV + K + DE ++ LD +++ ++Q+ + + ++ +
Sbjct: 139 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN--EGMTMVVVTH 196
Query: 205 PAPETFDLFDDIILLSEGQIVYQGPRERVLEFFESCGFCCPERKGTADFLQEV 257
++ D ++ + G I+ +G E + F P+ + T FL +V
Sbjct: 197 EMGFAREVGDRVLFMDGGYIIEEGKPEDL--------FDRPQHERTKAFLSKV 241
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 91/211 (43%), Gaps = 19/211 (9%)
Query: 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIE---GDIRISGFPKKQET 777
+ L V+ G + G +G+GK+TL+ ++AG IE GD+ G KK
Sbjct: 23 KALENVSLVINEGECLLVAGNTGSGKSTLLQIVAG-----LIEPTSGDVLYDGERKKGYE 77
Query: 778 FARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLV--ELESLK 835
R G Q + E + + D + V++ M+ V + +S K
Sbjct: 78 IRRNIGIAFQ---YPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFK 134
Query: 836 DAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 895
D + LS +++R+ IA +V P I+ +DEP GLD ++R V
Sbjct: 135 DRVPFF-----LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL 189
Query: 896 GRTVVCTIHQPSIDIFEAFDELLLLKRGGQV 926
G+TV+ H + D +++L++G +V
Sbjct: 190 GKTVILISHDIET-VINHVDRVVVLEKGKKV 219
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 145 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQ 204
+SGG+K+RV +IV L +DE GLD +++ +++ + IL+S
Sbjct: 141 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILIS--H 198
Query: 205 PAPETFDLFDDIILLSEGQIVYQGPRERVLEFFE 238
+ D +++L +G+ V+ G R LE ++
Sbjct: 199 DIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYD 232
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 97/195 (49%), Gaps = 11/195 (5%)
Query: 732 PGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCE--QND 789
G AL+G SG+GK+T+ ++ + EG+I + G ++ T A + +
Sbjct: 368 AGKTVALVGRSGSGKSTIASLIT--RFYDIDEGEILMDGHDLREYTLASLRNQVALVSQN 425
Query: 790 IHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLV-ELESLKDAIVGLPGVTGLS 848
+H TV ++ Y+ + ++E +E + MD + ++++ D ++G GV LS
Sbjct: 426 VHLFNDTVANNIAYARTEQYSREQIEEAA--RMAYAMDFINKMDNGLDTVIGENGVL-LS 482
Query: 849 IEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 908
QR+R+ IA L+ + I+ +DE TS LD + + + + + RT + H+ S
Sbjct: 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DELQKNRTSLVIAHRLS- 540
Query: 909 DIFEAFDELLLLKRG 923
E DE+++++ G
Sbjct: 541 -TIEKADEIVVVEDG 554
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 90/208 (43%), Gaps = 41/208 (19%)
Query: 31 GEITYNGYRLNEFVP---QKTSAYISQNDVHVGEMTVKETLDFSARCLGVGTRYELLSEL 87
GEI +G+ L E+ + A +SQN VH+ TV + +
Sbjct: 398 GEILMDGHDLREYTLASLRNQVALVSQN-VHLFNDTVANNIAY----------------- 439
Query: 88 ARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISG 147
AR E+ + +I+ E + D+ K +D DT++G E +SG
Sbjct: 440 ARTEQ----YSREQIE--------EAARMAYAMDFINK---MDNGLDTVIG-ENGVLLSG 483
Query: 148 GQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAP 207
GQ++R+ ++ + L +DE ++ LD+ + I L ++ + ++ L
Sbjct: 484 GQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRL---- 539
Query: 208 ETFDLFDDIILLSEGQIVYQGPRERVLE 235
T + D+I+++ +G IV +G +LE
Sbjct: 540 STIEKADEIVVVEDGVIVERGTHNDLLE 567
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 91/211 (43%), Gaps = 19/211 (9%)
Query: 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIE---GDIRISGFPKKQET 777
+ L V+ G + G +G+GK+TL+ ++AG IE GD+ G KK
Sbjct: 21 KALENVSLVINEGECLLVAGNTGSGKSTLLQIVAG-----LIEPTSGDVLYDGERKKGYE 75
Query: 778 FARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLV--ELESLK 835
R G Q + E + + D + V++ M+ V + +S K
Sbjct: 76 IRRNIGIAFQ---YPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFK 132
Query: 836 DAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 895
D + LS +++R+ IA +V P I+ +DEP GLD ++R V
Sbjct: 133 DRVPFF-----LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL 187
Query: 896 GRTVVCTIHQPSIDIFEAFDELLLLKRGGQV 926
G+TV+ H + D +++L++G +V
Sbjct: 188 GKTVILISHDIET-VINHVDRVVVLEKGKKV 217
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 145 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQ 204
+SGG+K+RV +IV L +DE GLD +++ +++ + IL+S
Sbjct: 139 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILIS--H 196
Query: 205 PAPETFDLFDDIILLSEGQIVYQGPRERVLEFFE 238
+ D +++L +G+ V+ G R LE ++
Sbjct: 197 DIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYD 230
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 102/228 (44%), Gaps = 39/228 (17%)
Query: 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVL 753
A+ F +V++ PE+ + + + + G + AL+G SG+GK+T++ +L
Sbjct: 372 ALEFKNVHFAYPARPEVP----------IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLL 421
Query: 754 AGRKTGGYIEGDIRISGFPKKQET----FARISGYCEQNDIHSPQVTVKESLIYSAFLRL 809
+ G I + G +Q ++I ++ + S ++ E++ Y A
Sbjct: 422 L--RLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFS--CSIAENIAYGA---- 473
Query: 810 AKEVSKEDKIIFVEEVMDLVELESLK----------DAIVGLPGVTGLSIEQRKRLTIAV 859
+ + EE+ + E+ + + +VG GV LS Q++R+ IA
Sbjct: 474 -----DDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL-LSGGQKQRIAIAR 527
Query: 860 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 907
L+ NP I+ +DE TS LDA +V + +D GRTV+ H S
Sbjct: 528 ALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHHLS 574
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 50/101 (49%), Gaps = 5/101 (4%)
Query: 134 DTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHV 193
+T+VG E +SGGQK+R+ ++ K L +DE ++ LD+ Y + + L +++
Sbjct: 505 NTVVG-EKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDG 563
Query: 194 TDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234
++ L T + + +L +G+I G E +L
Sbjct: 564 RTVLVIAHHLS----TIKNANMVAVLDQGKITEYGKHEELL 600
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 97/201 (48%), Gaps = 23/201 (11%)
Query: 732 PGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCE--QND 789
G AL+G SG+GK+T+ ++ + EG I + G ++ T A + +
Sbjct: 368 AGKTVALVGRSGSGKSTIASLIT--RFYDIDEGHILMDGHDLREYTLASLRNQVALVSQN 425
Query: 790 IHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEV------MDLV-ELESLKDAIVGLP 842
+H TV ++ Y+ +E S+E +EE MD + ++++ D I+G
Sbjct: 426 VHLFNDTVANNIAYAR----TEEYSREQ----IEEAARMAYAMDFINKMDNGLDTIIGEN 477
Query: 843 GVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 902
GV LS QR+R+ IA L+ + I+ +DE TS LD + + + + + RT +
Sbjct: 478 GVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DELQKNRTSLVI 535
Query: 903 IHQPSIDIFEAFDELLLLKRG 923
H+ S E DE+++++ G
Sbjct: 536 AHRLS--TIEQADEIVVVEDG 554
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 61/124 (49%), Gaps = 6/124 (4%)
Query: 112 EGVESSLITDYTLKILG-LDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDE 170
E +E + Y + + +D DTI+G E +SGGQ++R+ ++ + L +DE
Sbjct: 448 EQIEEAARMAYAMDFINKMDNGLDTIIG-ENGVLLSGGQRQRIAIARALLRDSPILILDE 506
Query: 171 ISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPR 230
++ LD+ + I L ++ + ++ L T + D+I+++ +G IV +G
Sbjct: 507 ATSALDTESERAIQAALDELQKNRTSLVIAHRL----STIEQADEIVVVEDGIIVERGTH 562
Query: 231 ERVL 234
+L
Sbjct: 563 SELL 566
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 103/228 (45%), Gaps = 39/228 (17%)
Query: 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVL 753
A+ F +V++ PE+ + + + + G + AL+G SG+GK+T++ +L
Sbjct: 341 ALEFKNVHFAYPARPEVP----------IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLL 390
Query: 754 AGRKTGGYIEGDIRISGFPKKQET----FARISGYCEQNDIHSPQVTVKESLIYSAFLRL 809
+ G I + G +Q ++I ++ + S ++ E++ Y A
Sbjct: 391 L--RLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFS--CSIAENIAYGA---- 442
Query: 810 AKEVSKEDKIIFVEEVMDLVELESLK----------DAIVGLPGVTGLSIEQRKRLTIAV 859
+ + EE+ + E+ + + +VG GV LS Q++R+ IA
Sbjct: 443 -----DDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL-LSGGQKQRIAIAR 496
Query: 860 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 907
L+ NP I+ +DE TS LDA +V + +D GRTV+ H+ S
Sbjct: 497 ALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLS 543
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 50/101 (49%), Gaps = 5/101 (4%)
Query: 134 DTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHV 193
+T+VG E +SGGQK+R+ ++ K L +DE ++ LD+ Y + + L +++
Sbjct: 474 NTVVG-EKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDG 532
Query: 194 TDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234
++ L T + + +L +G+I G E +L
Sbjct: 533 RTVLVIAHRLS----TIKNANMVAVLDQGKITEYGKHEELL 569
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 52.8 bits (125), Expect = 1e-06, Method: Composition-based stats.
Identities = 60/227 (26%), Positives = 95/227 (41%), Gaps = 7/227 (3%)
Query: 709 EMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRI 768
E+++ + D +L V G + ALMG +GAGK+TL +LAG G+I +
Sbjct: 5 EIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILL 64
Query: 769 SG---FPKKQETFARISGYCE-QNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEE 824
G + AR + Q + P VT+ L + +L +EV + F +
Sbjct: 65 DGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAE---FWTK 121
Query: 825 VMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 884
V +EL ++ + G S ++KR I LV P+ +DE SGLD A +
Sbjct: 122 VKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKV 181
Query: 885 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGP 931
V R V + H I + D++ ++ G V GP
Sbjct: 182 VARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGP 228
Score = 34.3 bits (77), Expect = 0.44, Method: Composition-based stats.
Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 16/109 (14%)
Query: 141 MNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQI-------VHV 193
+N G SGG+KKR +++V +DE +GLD + + + + + +
Sbjct: 140 LNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVI 199
Query: 194 TDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFESCGF 242
T +++ +QP D + ++ +G++V G E LE E+ G+
Sbjct: 200 THYQRILNYIQP--------DKVHVMMDGRVVATGGPELALE-LEAKGY 239
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 110/250 (44%), Gaps = 39/250 (15%)
Query: 685 GMVLPFTPLAMSFDSV--YYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVS 742
+ LP ++SF++V Y+ + P +L+ V + +PG L A++G +
Sbjct: 332 ALALPNVEGSVSFENVEFRYFENTDP-------------VLSGVNFSVKPGSLVAVLGET 378
Query: 743 GAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVKESLI 802
G+GK+TLM+++ + G + + + + G+ PQ TV S
Sbjct: 379 GSGKSTLMNLIP--RLIDPERGRVEVDELDVRTVKLKDLRGHISA----VPQETVLFSGT 432
Query: 803 YSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLP---------GVTGLSIEQRK 853
L+ +E + +D E+++ ++ + D I+ LP G S Q++
Sbjct: 433 IKENLKWGREDATDD------EIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQ 486
Query: 854 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA 913
RL+IA LV P ++ +D+ TS +D ++ ++ T + T P+ +
Sbjct: 487 RLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALL--- 543
Query: 914 FDELLLLKRG 923
D++L+L G
Sbjct: 544 ADKILVLHEG 553
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 11/141 (7%)
Query: 108 ATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLF 167
AT E VE++ I I+ L D+ V + R SGGQK+R++ +V K L
Sbjct: 444 ATDDEIVEAAKIAQIHDFIISLPEGYDSRV-ERGGRNFSGGQKQRLSIARALVKKPKVLI 502
Query: 168 MDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQ 227
+D+ ++ +D T +I+ L++ T + Q P L D I++L EG++
Sbjct: 503 LDDCTSSVDPITEKRILDGLKR---YTKGCTTFIITQKIPTAL-LADKILVLHEGKVAGF 558
Query: 228 GPRERVLEFFESCGFCCPERK 248
G + +LE C P R+
Sbjct: 559 GTHKELLE------HCKPYRE 573
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 101/220 (45%), Gaps = 33/220 (15%)
Query: 719 KLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPKKQE 776
+++L +T PG + AL+G +G+GK+T+ +L + TGG + + G P Q
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGG----KVLLDGEPLVQ- 85
Query: 777 TFARISGYCEQNDIHSPQVTV-KESLIYSAFLR--LAKEVSKEDKIIFVEEVMDLVELES 833
+ + +H+ V +E L++ R +A +++ + EE+ +
Sbjct: 86 --------YDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTM---EEITAVAMESG 134
Query: 834 LKDAIVGLP-------GVTG--LSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 884
D I G P G TG LS QR+ + +A L+ P ++ +D+ TS LDA
Sbjct: 135 AHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLR 194
Query: 885 VMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRG 923
V R + + + RTV+ HQ + + E +L LK G
Sbjct: 195 VQRLLYESPEWASRTVLLITHQ--LSLAERAHHILFLKEG 232
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 126 ILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVK 185
I G DT VG+ N+ +SGGQ++ V ++ + L +D+ ++ LD+ ++ +
Sbjct: 139 ISGFPQGYDTEVGETGNQ-LSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQR 197
Query: 186 CLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235
L + T+L+ Q + + I+ L EG + QG +++E
Sbjct: 198 LLYESPEWASRTVLLITHQLS--LAERAHHILFLKEGSVCEQGTHLQLME 245
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 95/215 (44%), Gaps = 24/215 (11%)
Query: 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQET 777
D L +V+ PG AL+G SGAGK+T++ +L + G IRI G Q T
Sbjct: 65 DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLF--RFYDISSGCIRIDGQDISQVT 122
Query: 778 FARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDA 837
A + + PQ TV + + +R + + D EV + + DA
Sbjct: 123 QASLRSHIGV----VPQDTVLFNDTIADNIRYGRVTAGND------EVEAAAQAAGIHDA 172
Query: 838 IVGLP-------GVTGLSIE--QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 888
I+ P G GL + +++R+ IA ++ P II +DE TS LD + +
Sbjct: 173 IMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQAS 232
Query: 889 VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 923
+ V RT + H+ S + D++L++K G
Sbjct: 233 LAK-VCANRTTIVVAHRLSTVV--NADQILVIKDG 264
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 145 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQ 204
+SGG+K+RV I+ + +DE ++ LD+S I L ++ ++ L
Sbjct: 191 LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLS 250
Query: 205 PAPETFDLFDDIILLSEGQIVYQGPRERVL 234
D I+++ +G IV +G E +L
Sbjct: 251 TVVNA----DQILVIKDGCIVERGRHEALL 276
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 101/220 (45%), Gaps = 19/220 (8%)
Query: 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPKKQ 775
D L + + G + A++G +G GK+TL G + + G I D + + +K
Sbjct: 19 DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKG 78
Query: 776 ETFARIS-GYCEQN-DIHSPQVTVKESLIYSAF-LRLAK-EVSKEDKIIFVEEVMDLVEL 831
R S G Q+ D +V + + + A ++L + E+ K V+ + +
Sbjct: 79 IMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKR-----VDNALKRTGI 133
Query: 832 ESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR-TVR 890
E LKD LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ V
Sbjct: 134 EHLKDKPTHC-----LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVE 188
Query: 891 NTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930
+ G T++ H IDI + + + + + G+VI G
Sbjct: 189 MQKELGITIIIATH--DIDIVPLYCDNVFVMKEGRVILQG 226
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 15/117 (12%)
Query: 120 TDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSST 179
D LK G++ KD + +S GQKKRV ++V K L +DE + GLD
Sbjct: 124 VDNALKRTGIEHLKD-----KPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMG 178
Query: 180 TYQIVKCLQQIVHVTDATILMSLLQPAPETFDLF----DDIILLSEGQIVYQG-PRE 231
+I+K L ++ TI++ A D+ D++ ++ EG+++ QG P+E
Sbjct: 179 VSEIMKLLVEMQKELGITIII-----ATHDIDIVPLYCDNVFVMKEGRVILQGNPKE 230
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 51.6 bits (122), Expect = 3e-06, Method: Composition-based stats.
Identities = 54/218 (24%), Positives = 96/218 (44%), Gaps = 15/218 (6%)
Query: 716 AEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLA--GRKTGG--YIEGDIRISGF 771
E+ + L V + G ++ G SG+GK+T ++++ + T G YI+ +I+ +
Sbjct: 14 GEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYID-NIKTNDL 72
Query: 772 PKKQETFARIS--GYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLV 829
+ T R G+ Q P +T E++ + S E++ E +
Sbjct: 73 DDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXA 132
Query: 830 ELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 889
ELE LS Q++R+ IA L NP II DEPT LD++ + + +
Sbjct: 133 ELEER----FANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLL 188
Query: 890 RN-TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQV 926
+ + G+TVV H ++ F E ++ + G+V
Sbjct: 189 KKLNEEDGKTVVVVTHDINV---ARFGERIIYLKDGEV 223
Score = 35.8 bits (81), Expect = 0.15, Method: Composition-based stats.
Identities = 40/165 (24%), Positives = 69/165 (41%), Gaps = 19/165 (11%)
Query: 86 ELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDY------------TLKILGLDICK 133
EL + +D F + +L TA+E VE LI Y L+ L +
Sbjct: 76 ELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAELE 135
Query: 134 DTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHV 193
+ + N+ +SGGQ++RV + + DE + LDS T +I + L+++
Sbjct: 136 ERFANHKPNQ-LSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEE 194
Query: 194 TDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFE 238
T+++ F + II L +G++ RE L F+
Sbjct: 195 DGKTVVVVTHDINVARFG--ERIIYLKDGEV----EREEKLRGFD 233
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 104/214 (48%), Gaps = 18/214 (8%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLA---GRKTGGY-IEG-DIRISGFPKKQET 777
L+ V+ + G AL+G SG+GK+T+ ++ +G ++G D+R +
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRH 418
Query: 778 FARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVE-LESLKD 836
FA +S ++H T+ ++ Y+A +E + ++ M+ +E + D
Sbjct: 419 FALVS-----QNVHLFNDTIANNIAYAAEGEYTRE--QIEQAARQAHAMEFIENMPQGLD 471
Query: 837 AIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 896
++G G T LS QR+R+ IA L+ + ++ +DE TS LD + + + + +
Sbjct: 472 TVIGENG-TSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAAL-DELQKN 529
Query: 897 RTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930
+TV+ H+ S E DE+L++ G++I G
Sbjct: 530 KTVLVIAHRLS--TIEQADEILVVDE-GEIIERG 560
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 54/101 (53%), Gaps = 5/101 (4%)
Query: 134 DTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHV 193
DT++G E +SGGQ++RV ++ L +DE ++ LD+ + I L ++
Sbjct: 471 DTVIG-ENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDEL--Q 527
Query: 194 TDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234
+ T+L ++ T + D+I+++ EG+I+ +G +L
Sbjct: 528 KNKTVL--VIAHRLSTIEQADEILVVDEGEIIERGRHADLL 566
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 86/185 (46%), Gaps = 16/185 (8%)
Query: 731 RPGVLAALMGVSGAGKTTLMDVLAGR------KTGGYIEGDIRISGFPKKQETFARISGY 784
+ G + ++G +G GK+T + +LAG+ +G IR + Q F ++
Sbjct: 45 KEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN- 103
Query: 785 CEQNDIHSPQ-VTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPG 843
E + PQ V + + + L K+ + K+ EEV+ +ELE++ +
Sbjct: 104 GEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKL---EEVVKALELENVLER-----E 155
Query: 844 VTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 903
+ LS + +R+ IA L+ N + F DEP+S LD R R +R + G++V+
Sbjct: 156 IQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVE 215
Query: 904 HQPSI 908
H ++
Sbjct: 216 HDLAV 220
Score = 37.7 bits (86), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 80/194 (41%), Gaps = 28/194 (14%)
Query: 730 FRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPKKQETFARISGYCEQ 787
+ G + ++G +G GKTT + LAG T G IE D+ ++ P+ Y +
Sbjct: 309 IKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDLTVAYKPQ----------YIKA 358
Query: 788 NDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGL 847
+ E +Y ++ + SK + + E++ + + L D V L
Sbjct: 359 D---------YEGTVYELLSKI--DASKLNSNFYKTELLKPLGIIDLYDR-----EVNEL 402
Query: 848 SIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 907
S + +R+ IA L+ + I +DEP++ LD V R +R+ + +
Sbjct: 403 SGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEHDV 462
Query: 908 IDIFEAFDELLLLK 921
+ I D L + +
Sbjct: 463 LXIDYVSDRLXVFE 476
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 104/225 (46%), Gaps = 11/225 (4%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP--KKQETFA 779
+L ++T +PG AL+G +G+GKTT++++L + G I + G K + +
Sbjct: 370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLM--RFYDVDRGQILVDGIDIRKIKRSSL 427
Query: 780 RISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIV 839
R S D TVKE+L Y +E+ + K+ + + L + ++
Sbjct: 428 RSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIK--HLPEGYETVL 485
Query: 840 GLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 899
G LS QR+ L I +ANP I+ +DE TS +D + + + ++ G+T
Sbjct: 486 TDNG-EDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLME-GKTS 543
Query: 900 VCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVIEYYE 944
+ H+ ++ + D L+++ R G+++ G K YYE
Sbjct: 544 IIIAHR--LNTIKNAD-LIIVLRDGEIVEMGKHDELIQKRGFYYE 585
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 8/109 (7%)
Query: 134 DTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHV 193
+T++ D +S GQ++ + + K L +DE ++ +D+ T I + +++
Sbjct: 482 ETVLTDN-GEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEG 540
Query: 194 TDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFESCGF 242
+ I+ L T D II+L +G+IV G + E + GF
Sbjct: 541 KTSIIIAHRLN----TIKNADLIIVLRDGEIVEMGKHD---ELIQKRGF 582
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 100/220 (45%), Gaps = 33/220 (15%)
Query: 719 KLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPKKQE 776
+++L +T PG + AL+G +G+GK+T+ +L + TGG + + G P Q
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGG----KVLLDGEPLVQ- 85
Query: 777 TFARISGYCEQNDIHSPQVTV-KESLIYSAFLR--LAKEVSKEDKIIFVEEVMDLVELES 833
+ + +H+ V +E L++ R +A +++ + EE+ +
Sbjct: 86 --------YDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTM---EEITAVAMESG 134
Query: 834 LKDAIVGLP-------GVTG--LSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 884
D I G P G TG L++ QR+ + +A L+ P ++ +D TS LDA
Sbjct: 135 AHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLR 194
Query: 885 VMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRG 923
V R + + + RTV+ Q + + E +L LK G
Sbjct: 195 VQRLLYESPEWASRTVLLITQQ--LSLAERAHHILFLKEG 232
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 51/110 (46%), Gaps = 3/110 (2%)
Query: 126 ILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVK 185
I G DT VG+ N+ ++ GQ++ V ++ + L +D ++ LD+ ++ +
Sbjct: 139 ISGFPQGYDTEVGETGNQ-LAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQR 197
Query: 186 CLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235
L + T+L+ Q + + I+ L EG + QG +++E
Sbjct: 198 LLYESPEWASRTVLLITQQLS--LAERAHHILFLKEGSVCEQGTHLQLME 245
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 60/204 (29%), Positives = 92/204 (45%), Gaps = 21/204 (10%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPKKQETFA 779
L ++ G + A++G +G GK+TL+D+L G R G IE I P + F+
Sbjct: 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVP---QFFS 76
Query: 780 RISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIV 839
Y DI V + S + F AK S + ++ + +D + L L
Sbjct: 77 SPFAYSVL-DI----VLMGRSTHINTF---AKPKSHDYQVAM--QALDYLNLTHLAKR-- 124
Query: 840 GLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRT 898
T LS QR+ + IA + + +I +DEPTS LD IV+ + + + T
Sbjct: 125 ---EFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMT 181
Query: 899 VVCTIHQPSIDIFEAFDELLLLKR 922
VV T HQP+ + A LLL K+
Sbjct: 182 VVFTTHQPNQVVAIANKTLLLNKQ 205
Score = 35.4 bits (80), Expect = 0.21, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 38/85 (44%)
Query: 121 DYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 180
DY + + LD T + +SGGQ++ + I K + +DE ++ LD +
Sbjct: 105 DYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQ 164
Query: 181 YQIVKCLQQIVHVTDATILMSLLQP 205
++ L + + T++ + QP
Sbjct: 165 DIVLSLLIDLAQSQNMTVVFTTHQP 189
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 12/171 (7%)
Query: 733 GVLAALMGVSGAGKTTLMDVLAG---RKTGGYIEGDIRISGFPKKQETFARISGYCEQND 789
G + L+G +GAGKTT + +AG + G I I+ P I+ E
Sbjct: 32 GQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRXGIALVPEGRR 91
Query: 790 IHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSI 849
I P++TV E+L A+ R KE K D +E + L LK+ + L G LS
Sbjct: 92 IF-PELTVYENLXXGAYNRKDKEGIKRD----LEWIFSL--FPRLKERLKQLGGT--LSG 142
Query: 850 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 900
+++ L I L + P ++ DEP+ GL + V ++ G T++
Sbjct: 143 GEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTIL 193
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 99/220 (45%), Gaps = 33/220 (15%)
Query: 719 KLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPKKQE 776
+++L +T PG + AL+G +G+GK+T+ +L + TGG + + G P Q
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGG----KVLLDGEPLVQ- 85
Query: 777 TFARISGYCEQNDIHSPQVTV-KESLIYSAFLR--LAKEVSKEDKIIFVEEVMDLVELES 833
+ + +H+ V +E L++ R +A +++ + EE+ +
Sbjct: 86 --------YDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTM---EEITAVAMESG 134
Query: 834 LKDAIVGLP-------GVTG--LSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 884
D I G P G TG LS QR+ + +A L+ P ++ +D TS LDA
Sbjct: 135 AHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLR 194
Query: 885 VMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRG 923
V R + + + RTV+ Q + + E +L LK G
Sbjct: 195 VQRLLYESPEWASRTVLLITQQ--LSLAERAHHILFLKEG 232
Score = 37.7 bits (86), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 3/110 (2%)
Query: 126 ILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVK 185
I G DT VG+ N+ +SGGQ++ V ++ + L +D ++ LD+ ++ +
Sbjct: 139 ISGFPQGYDTEVGETGNQ-LSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQR 197
Query: 186 CLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235
L + T+L+ Q + + I+ L EG + QG +++E
Sbjct: 198 LLYESPEWASRTVLLITQQLS--LAERAHHILFLKEGSVCEQGTHLQLME 245
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 91/200 (45%), Gaps = 12/200 (6%)
Query: 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRK----TGGYIE--GDIRISG 770
EDK +L ++ PG + A+MG +G+GK+TL LAGR+ TGG +E G ++
Sbjct: 31 EDK-AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLAL 89
Query: 771 FPKKQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKE--DKIIFVEEVMDL 828
P+ + + Q + P V+ + + +A + +E D+ F + + +
Sbjct: 90 SPEDRAGEGIFMAF--QYPVEIPGVS-NQFFLQTALNAVRSYRGQETLDRFDFQDLMEEK 146
Query: 829 VELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 888
+ L + + ++ G S ++KR I V P + +DE SGLD A +V
Sbjct: 147 IALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADG 206
Query: 889 VRNTVDTGRTVVCTIHQPSI 908
V + D R+ + H I
Sbjct: 207 VNSLRDGKRSFIIVTHYQRI 226
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 91/200 (45%), Gaps = 12/200 (6%)
Query: 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRK----TGGYIE--GDIRISG 770
EDK +L ++ PG + A+MG +G+GK+TL LAGR+ TGG +E G ++
Sbjct: 12 EDK-AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLAL 70
Query: 771 FPKKQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKE--DKIIFVEEVMDL 828
P+ + + Q + P V+ + + +A + +E D+ F + + +
Sbjct: 71 SPEDRAGEGIFMAF--QYPVEIPGVS-NQFFLQTALNAVRSYRGQETLDRFDFQDLMEEK 127
Query: 829 VELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 888
+ L + + ++ G S ++KR I V P + +DE SGLD A +V
Sbjct: 128 IALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADG 187
Query: 889 VRNTVDTGRTVVCTIHQPSI 908
V + D R+ + H I
Sbjct: 188 VNSLRDGKRSFIIVTHYQRI 207
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 47.8 bits (112), Expect = 4e-05, Method: Composition-based stats.
Identities = 56/212 (26%), Positives = 100/212 (47%), Gaps = 25/212 (11%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISG---FPKKQETF 778
+LN+++ + PG + ++G SG GKTTL+ LAG + G+I +SG F K
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD--SGEISLSGKTIFSKNTNLP 76
Query: 779 ARIS--GYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKD 836
R GY Q + P +TV ++ Y L K + +++ + + ++EL + +
Sbjct: 77 VRERRLGYLVQEGVLFPHLTVYRNIAYG--LGNGKGRTAQER----QRIEAMLELTGISE 130
Query: 837 AIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV--- 893
P LS Q++R +A L +P +I +DEP S LD + + R +R +
Sbjct: 131 LAGRYP--HELSGGQQQRAALARALAPDPELILLDEPFSALDEQ----LRRQIREDMIAA 184
Query: 894 --DTGRTVVCTIHQPSIDIFEAFDELLLLKRG 923
G++ V H + + D + ++K+G
Sbjct: 185 LRANGKSAVFVSHDRE-EALQYADRIAVMKQG 215
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 47.8 bits (112), Expect = 4e-05, Method: Composition-based stats.
Identities = 40/158 (25%), Positives = 79/158 (50%), Gaps = 21/158 (13%)
Query: 738 LMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISG-----FPKKQETFARISGYCEQNDIHS 792
L+G +GAGK+ ++++AG G++R++G P ++ R G+ Q+
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPD--RGEVRLNGADITPLPPER----RGIGFVPQDYALF 82
Query: 793 PQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQR 852
P ++V ++ Y LR + V ++ ++ + E + + L K A LS +R
Sbjct: 83 PHLSVYRNIAYG--LRNVERVERDRRVREMAEKLGIAHLLDRKPA--------RLSGGER 132
Query: 853 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 890
+R+ +A LV P ++ +DEP S +D + ++M +R
Sbjct: 133 QRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELR 170
Score = 32.0 bits (71), Expect = 2.2, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 145 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQ 204
+SGG+++RV +V + L +DE + +D T +++ L+ + D IL +
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPIL-HVTH 185
Query: 205 PAPETFDLFDDIILLSEGQIVYQG 228
E L D++ ++ G+IV +G
Sbjct: 186 DLIEAAMLADEVAVMLNGRIVEKG 209
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 81/197 (41%), Gaps = 33/197 (16%)
Query: 731 RPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQN-- 788
RPG + L+G +G GK+T + +LAG++ R P+ QE G QN
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNL----GRFDDPPEWQEIIKYFRGSELQNYF 156
Query: 789 ------DIHS----------PQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELE 832
DI + P+ L+L E S ED V+ + +++LE
Sbjct: 157 TKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPED----VKRYIKILQLE 212
Query: 833 S-LKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 891
+ LK I L G + +R I + V + DEP+S LD + + +R+
Sbjct: 213 NVLKRDIEKLSG------GELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRS 266
Query: 892 TVDTGRTVVCTIHQPSI 908
+ + V+C H S+
Sbjct: 267 LLAPTKYVICVEHDLSV 283
Score = 30.0 bits (66), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 69/169 (40%), Gaps = 24/169 (14%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARI 781
+LN F + +MG +G GKTTL+ +LAG + +++ K Q+ +
Sbjct: 367 VLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKF 426
Query: 782 SGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGL 841
G Q+ K+ I FL F +V+ + ++ + D
Sbjct: 427 PGTVR-------QLFFKK--IRGQFLNPQ----------FQTDVVKPLRIDDIIDQ---- 463
Query: 842 PGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 890
V LS + +R+ I + L I +DEP++ LD+ I + +R
Sbjct: 464 -EVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIR 511
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 47.8 bits (112), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 847 LSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 905
LS Q++R++IA L P ++ DEPTS LD V+R ++ + G+T+V H+
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 212
Score = 36.6 bits (83), Expect = 0.11, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 145 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQ 204
+SGGQ++RV+ + L DE ++ LD ++++ +QQ+ + ++ +
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE--EGKTMVVVTH 211
Query: 205 PAPETFDLFDDIILLSEGQIVYQGPRERVL 234
+ +I L +G+I +G E+V
Sbjct: 212 EMGFARHVSSHVIFLHQGKIEEEGDPEQVF 241
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 47.8 bits (112), Expect = 5e-05, Method: Composition-based stats.
Identities = 54/226 (23%), Positives = 100/226 (44%), Gaps = 23/226 (10%)
Query: 719 KLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETF 778
+ + L+ V+ + G + ++G +G+GK+TL++V+ G EG + +
Sbjct: 19 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD--EGRVYFENKDITNKEP 76
Query: 779 ARISGYCEQNDIHSPQ----VTVKESLIYSAF---------LRLAKEVSKEDKIIFVE-E 824
A + Y +PQ +TV E+L+ L K + KE++++ +
Sbjct: 77 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFK 136
Query: 825 VMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 884
+++ ++L L D G LS Q K + I L+ NP +I MD+P +G+ A
Sbjct: 137 ILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHD 191
Query: 885 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930
+ V G T + H+ +DI + + L + GQ+I G
Sbjct: 192 IFNHVLELKAKGITFLIIEHR--LDIVLNYIDHLYVMFNGQIIAEG 235
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 47.4 bits (111), Expect = 5e-05, Method: Composition-based stats.
Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 21/167 (12%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGG--YIEGDIRISG-----FPK 773
+ +++ + G L+G SG GKTT + +AG T G YIE ++ P
Sbjct: 22 VKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPP 81
Query: 774 KQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES 833
K+ A + Q+ P TV +++ + LR + + ++ V E + L EL +
Sbjct: 82 KERDVAXVF----QSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTELLN 137
Query: 834 LKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 880
K LS QR+R+ + ++ P + DEP S LDA+
Sbjct: 138 RKP--------RELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAK 176
Score = 31.2 bits (69), Expect = 3.6, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 143 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQI---VKCLQQIVHVTDATIL 199
R +SGGQ++RV G I+ K DE + LD+ + +K LQ+ + VT TI
Sbjct: 141 RELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVT--TIY 198
Query: 200 MSLLQPAPETFDLFDDIILLSEGQIVYQGPRERV 233
++ Q T D I + ++G++ G + V
Sbjct: 199 VTHDQVEAXTXG--DRIAVXNKGELQQVGTPDEV 230
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 21/167 (12%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKT---GGYIEGDIRISG------FPK 773
+ E++ + G L+G SG GKTT + ++AG + G GD ++ P
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78
Query: 774 KQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES 833
K A + Q+ P +TV +++ + LR + ++ V E++ L EL +
Sbjct: 79 KDRDIAMVF----QSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLN 134
Query: 834 LKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 880
K LS QR+R+ + +V P + MDEP S LDA+
Sbjct: 135 RKP--------RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAK 173
Score = 34.7 bits (78), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 143 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQI---VKCLQQIVHVT 194
R +SGGQ++RV G IV + MDE + LD+ ++ +K LQ+ + VT
Sbjct: 138 RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVT 192
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 47.0 bits (110), Expect = 6e-05, Method: Composition-based stats.
Identities = 50/190 (26%), Positives = 89/190 (46%), Gaps = 15/190 (7%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVL----AGRKTGGYIEGDIRISGFPKKQET 777
+L ++ + + G +++G SG+GK+TL+ +L A + ++EG + +K+ +
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGK-EVDYTNEKELS 77
Query: 778 FARIS--GYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLK 835
R G+ Q P++T E++I L++ K KE K E L+ L
Sbjct: 78 LLRNRKLGFVFQFHYLIPELTALENVIVP-MLKMGKP-KKEAK----ERGEYLLSELGLG 131
Query: 836 DAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 895
D + P LS +++R+ IA L P ++F DEPT LD+ VM +
Sbjct: 132 DKLSRKP--YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG 189
Query: 896 GRTVVCTIHQ 905
G ++V H+
Sbjct: 190 GTSIVMVTHE 199
Score = 34.7 bits (78), Expect = 0.35, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 11/73 (15%)
Query: 121 DYTLKILGLDICKDTIVGDEMNRG---ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDS 177
+Y L LGL GD+++R +SGG+++RV + LF DE + LDS
Sbjct: 122 EYLLSELGL--------GDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDS 173
Query: 178 STTYQIVKCLQQI 190
+ T +++ +I
Sbjct: 174 ANTKRVMDIFLKI 186
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 46.6 bits (109), Expect = 8e-05, Method: Composition-based stats.
Identities = 62/252 (24%), Positives = 111/252 (44%), Gaps = 24/252 (9%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ-ETFAR 780
L+N+V+ G + A++G +GAGK+TL+ +L G + + E + Q + AR
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALAR 85
Query: 781 ISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESL--KDAI 838
Q + +V E + R S++ + + ++VM + +L +D
Sbjct: 86 TRAVMRQYSELAFPFSVSEVIQMG---RAPYGGSQDRQAL--QQVMAQTDCLALAQRDYR 140
Query: 839 VGLPGVTGLSIEQRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRN- 891
V LS +++R+ +A L P +F+DEPTS LD +R +R
Sbjct: 141 V-------LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQL 193
Query: 892 TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG-RNSHKVIEYYEAIPGVP 950
T V C +H ++ A D ++LL +G V P N+ + ++Y+A GV
Sbjct: 194 TRQEPLAVCCVLHDLNLAALYA-DRIMLLAQGKLVACGTPEEVLNAETLTQWYQADLGVS 252
Query: 951 KIKEKYNPATWM 962
+ E P ++
Sbjct: 253 RHPESALPQIYL 264
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 100/226 (44%), Gaps = 23/226 (10%)
Query: 719 KLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETF 778
+ + L+ V+ + G + ++G +G+GK+TL++V+ G EG + +
Sbjct: 19 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD--EGRVYFENKDITNKEP 76
Query: 779 ARISGYCEQNDIHSPQ----VTVKESLIYSAF---------LRLAKEVSKEDKIIFVE-E 824
A + Y +PQ +TV E+L+ L K + KE++++ +
Sbjct: 77 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFK 136
Query: 825 VMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 884
+++ ++L L D G LS Q K + I L+ NP +I MDEP +G+ A
Sbjct: 137 ILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHD 191
Query: 885 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930
+ V G T + H+ +DI + + L + GQ+I G
Sbjct: 192 IFNHVLELKAKGITFLIIEHR--LDIVLNYIDHLYVMFNGQIIAEG 235
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 92/207 (44%), Gaps = 20/207 (9%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARI 781
+L ++ G L A+ G +GAGKT+L+ ++ G EG I+ SG RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 782 SGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGL 841
S +C QN P T+KE++I ++ E I + D+ + + ++G
Sbjct: 102 S-FCSQNSWIMPG-TIKENIIGVSY----DEYRYRSVIKACQLEEDISKFAEKDNIVLGE 155
Query: 842 PGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 901
G+T LS QR R+++A + + + +D P LD + + + +T +
Sbjct: 156 GGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 214
Query: 902 TIHQPSIDIFEAFDELLLLKRGGQVIY 928
+ ++ + D++L+L G Y
Sbjct: 215 VTSK--MEHLKKADKILILHEGSSYFY 239
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 92/207 (44%), Gaps = 20/207 (9%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARI 781
+L ++ G L A+ G +GAGKT+L+ ++ G EG I+ SG RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 782 SGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGL 841
S +C QN P T+KE++I ++ E I + D+ + + ++G
Sbjct: 102 S-FCSQNSWIMPG-TIKENIIGVSY----DEYRYRSVIKACQLEEDISKFAEKDNIVLGE 155
Query: 842 PGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 901
G+T LS QR R+++A + + + +D P LD + + + +T +
Sbjct: 156 GGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 214
Query: 902 TIHQPSIDIFEAFDELLLLKRGGQVIY 928
+ ++ + D++L+L G Y
Sbjct: 215 VTSK--MEHLKKADKILILHEGSSYFY 239
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 46/192 (23%), Positives = 82/192 (42%), Gaps = 9/192 (4%)
Query: 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDV--LAGRKTGGYIEGDIRISGFPKKQET 777
++ LN V+ G + ++G SGAGK+TL+ L R T EG + + G +
Sbjct: 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSVLVDGQELTTLS 96
Query: 778 FARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDA 837
+ ++ Q + S + L E+ K V +L+ L L D
Sbjct: 97 ESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDK 156
Query: 838 IVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTG 896
P + LS Q++R+ IA L +NP ++ D+ TS LD ++ +++ G
Sbjct: 157 HDSYP--SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLG 214
Query: 897 RTVVCTIHQPSI 908
T++ H+ +
Sbjct: 215 LTILLITHEXDV 226
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 139 DEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATI 198
D +SGGQK+RV + K L D+ ++ LD +TT I++ L+ I TI
Sbjct: 158 DSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTI 217
Query: 199 LMSLLQPAPETFDLFDDIILLSEGQIVYQ 227
L+ + + D + ++S G+++ Q
Sbjct: 218 LL-ITHEXDVVKRICDCVAVISNGELIEQ 245
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 100/226 (44%), Gaps = 23/226 (10%)
Query: 719 KLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETF 778
+ + L+ V+ + G + ++G +G+GK+TL++V+ G EG + +
Sbjct: 19 EFKALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKAD--EGRVYFENKDITNKEP 76
Query: 779 ARISGYCEQNDIHSPQ----VTVKESLIYSAF---------LRLAKEVSKEDKIIFVE-E 824
A + Y +PQ +TV E+L+ L K + KE++++ +
Sbjct: 77 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFK 136
Query: 825 VMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 884
+++ ++L L D G LS Q K + I L+ NP +I MDEP +G+ A
Sbjct: 137 ILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHD 191
Query: 885 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930
+ V G T + H+ +DI + + L + GQ+I G
Sbjct: 192 IFNHVLELKAKGITFLIIEHR--LDIVLNYIDHLYVMFNGQIIAEG 235
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 88/207 (42%), Gaps = 19/207 (9%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARI 781
+L ++ G L A+ G +GAGKT+L+ ++ G EG I+ SG RI
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 83
Query: 782 SGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGL 841
S +C Q P T+KE++I+ + S E++ E KD IV
Sbjct: 84 S-FCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAE----KDNIVLG 137
Query: 842 PGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 901
G LS QR R+++A + + + +D P LD + + + +T +
Sbjct: 138 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 197
Query: 902 TIHQPSIDIFEAFDELLLLKRGGQVIY 928
+ ++ + D++L+L G Y
Sbjct: 198 VTSK--MEHLKKADKILILHEGSSYFY 222
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 93/211 (44%), Gaps = 11/211 (5%)
Query: 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDV--LAGRKTGGYIEGDIRISGFPKKQET 777
++ LN V+ G + ++G SGAGK+TL+ L R T EG + + G +
Sbjct: 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSVLVDGQELTTLS 73
Query: 778 FARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDA 837
+ ++ Q + + S + L E+ K V +L+ L L D
Sbjct: 74 ESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDK 133
Query: 838 IVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTG 896
P + LS Q++R+ IA L +NP ++ DE TS LD ++ +++ G
Sbjct: 134 HDSYP--SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLG 191
Query: 897 RTVVCTIHQPSIDIFEAFDELLLLKRGGQVI 927
T++ H+ +D+ + + + + G++I
Sbjct: 192 LTILLITHE--MDVVKRICDCVAVISNGELI 220
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 139 DEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATI 198
D +SGGQK+RV + K L DE ++ LD +TT I++ L+ I TI
Sbjct: 135 DSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTI 194
Query: 199 LMSLLQPAPETFDLFDDIILLSEGQIVYQ 227
L+ + + D + ++S G+++ Q
Sbjct: 195 LL-ITHEMDVVKRICDCVAVISNGELIEQ 222
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 52/226 (23%), Positives = 104/226 (46%), Gaps = 20/226 (8%)
Query: 710 MKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRIS 769
M+ Q VAE L ++ R G + L+G +GAGK+TL+ +AG +G +G I+ +
Sbjct: 5 MQLQDVAESTR--LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFA 59
Query: 770 GFPKKQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLV 829
G P + + +++ +H ++ +++ ++ + + + DK E + D+
Sbjct: 60 GQPLEAWSATKLA-------LHRAYLSQQQTPPFATPVWHYLTLHQHDK-TRTELLNDVA 111
Query: 830 ELESLKDAIVGLPGVTGLSIEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDARAAAI 884
+L D + QR RL V + ANP+ ++ +D+P + LD +
Sbjct: 112 GALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSA 171
Query: 885 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930
+ + + G +V + H + + A LL +GG+++ SG
Sbjct: 172 LDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLL--KGGKMLASG 215
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 53/217 (24%), Positives = 95/217 (43%), Gaps = 31/217 (14%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPKKQETFA 779
+L +T RPG + AL+G +G+GK+T+ +L + TG G + + G P Q
Sbjct: 32 VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTG----GQLLLDGKPLPQY--- 84
Query: 780 RISGYCEQNDIHSPQVTV-KESLIYSAFLR--LAKEVSKEDKIIFVEEVMDLVELESLKD 836
E +H V +E ++ L+ +A ++++ + EE+
Sbjct: 85 ------EHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTM---EEITAAAVKSGAHS 135
Query: 837 AIVGLP---------GVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 887
I GLP + LS QR+ + +A L+ P ++ +D+ TS LDA + V +
Sbjct: 136 FISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQ 195
Query: 888 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGG 924
+ + + V I Q + + E D +L L+ G
Sbjct: 196 LLYESPERYSRSVLLITQ-HLSLVEQADHILFLEGGA 231
Score = 36.6 bits (83), Expect = 0.10, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 13/115 (11%)
Query: 126 ILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVK 185
I GL DT V DE +SGGQ++ V ++ L +D+ ++ LD+++ Q+ +
Sbjct: 137 ISGLPQGYDTEV-DEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQ 195
Query: 186 CLQQIVHVTDATIL-----MSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235
L + ++L +SL++ A D I+ L G I G ++++E
Sbjct: 196 LLYESPERYSRSVLLITQHLSLVEQA-------DHILFLEGGAIREGGTHQQLME 243
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 88/207 (42%), Gaps = 19/207 (9%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARI 781
+L ++ G L A+ G +GAGKT+L+ ++ G EG I+ SG RI
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 71
Query: 782 SGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGL 841
S +C Q P T+KE++I+ + S E++ E KD IV
Sbjct: 72 S-FCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAE----KDNIVLG 125
Query: 842 PGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 901
G LS QR R+++A + + + +D P LD + + + +T +
Sbjct: 126 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 185
Query: 902 TIHQPSIDIFEAFDELLLLKRGGQVIY 928
+ ++ + D++L+L G Y
Sbjct: 186 VTSK--MEHLKKADKILILHEGSSYFY 210
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 85/191 (44%), Gaps = 35/191 (18%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISG------FPKKQE 776
L+ ++ G ++G +GAGKT ++++AG G I + G P+K +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD--SGRILLDGKDVTDLSPEKHD 73
Query: 777 TFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKD 836
+ QN P + VK++L + ++ K+ + ++ DL ++E L D
Sbjct: 74 I-----AFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKR-----VLDTARDL-KIEHLLD 122
Query: 837 AIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 896
LS +++R+ +A LV NP I+ +DEP S LD R T +
Sbjct: 123 R-----NPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPR-----------TQENA 166
Query: 897 RTVVCTIHQPS 907
R ++ +H+ +
Sbjct: 167 REMLSVLHKKN 177
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Query: 129 LDICKDTIVGDEMNRG---ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVK 185
LD +D + ++R +SGG+++RV +V K L +DE + LD T +
Sbjct: 109 LDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENARE 168
Query: 186 CLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235
L ++H + ++ + E + D I ++ +G+++ G E + E
Sbjct: 169 ML-SVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFE 217
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 43.5 bits (101), Expect = 8e-04, Method: Composition-based stats.
Identities = 52/226 (23%), Positives = 103/226 (45%), Gaps = 20/226 (8%)
Query: 710 MKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRIS 769
M+ Q VAE L ++ R G + L+G +GAGK+TL+ +AG +G +G I+ +
Sbjct: 5 MQLQDVAESTR--LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFA 59
Query: 770 GFPKKQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLV 829
G P + + +++ +H ++ +++ ++ + + + DK E + D+
Sbjct: 60 GQPLEAWSATKLA-------LHRAYLSQQQTPPFATPVWHYLTLHQHDK-TRTELLNDVA 111
Query: 830 ELESLKDAIVGLPGVTGLSIEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDARAAAI 884
+L D + QR RL V + ANP+ ++ +D+P LD +
Sbjct: 112 GALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSA 171
Query: 885 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930
+ + + G +V + H + + A LL +GG+++ SG
Sbjct: 172 LDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLL--KGGKMLASG 215
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 109/243 (44%), Gaps = 33/243 (13%)
Query: 731 RPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISG---YCEQ 787
+ + ++G +G GKTT++ +LAG + + + ++ K E R G Y
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVG----KDEVLKRFRGKEIYNYF 78
Query: 788 NDIHSPQVTVKESLIY----SAFLR--LAKEVSKEDKIIFVEEVMDLVELESL--KDAIV 839
+++S ++ + + Y S FL+ + + ++K D+ +EV +L+ + +L KDA +
Sbjct: 79 KELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANI 138
Query: 840 GLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 899
LS +RL +A L+ + D+P+S LD R + + +R + + V
Sbjct: 139 -------LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKN-KYV 190
Query: 900 VCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVIEYYEAIPGVPKIKEKYNPA 959
+ H + + + +L+ + G +Y +V + Y A G+ + Y PA
Sbjct: 191 IVVDH--DLIVLDYLTDLIHIIYGESSVYG--------RVSKSYAARVGINNFLKGYLPA 240
Query: 960 TWM 962
M
Sbjct: 241 ENM 243
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 82/192 (42%), Gaps = 24/192 (12%)
Query: 731 RPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDI 790
+ G + ++G +G GKTT +L G T EG + P+KQ I Y Q
Sbjct: 292 KEGEIIGILGPNGIGKTTFARILVGEITAD--EGSVT----PEKQ-----ILSYKPQRIF 340
Query: 791 HSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIE 850
+ TV++ +L A + + F EEV + L L ++ V LS
Sbjct: 341 PNYDGTVQQ------YLENASKDALSTSSWFFEEVTKRLNLHRLLES-----NVNDLSGG 389
Query: 851 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI-HQPSID 909
+ ++L IA L + +D+P+S LD IV + ++ + V I H SI
Sbjct: 390 ELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIH 449
Query: 910 IFEAFDELLLLK 921
+ A D +++ K
Sbjct: 450 DYIA-DRIIVFK 460
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 93/211 (44%), Gaps = 11/211 (5%)
Query: 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDV--LAGRKTGGYIEGDIRISGFPKKQET 777
++ LN V+ G + ++G SGAGK+TL+ L R T EG + + G +
Sbjct: 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSVLVDGQELTTLS 96
Query: 778 FARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDA 837
+ ++ Q + + S + L E+ K V +L+ L L D
Sbjct: 97 ESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDK 156
Query: 838 IVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTG 896
P + LS Q++R+ IA L +NP ++ D+ TS LD ++ +++ G
Sbjct: 157 HDSYP--SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLG 214
Query: 897 RTVVCTIHQPSIDIFEAFDELLLLKRGGQVI 927
T++ H+ +D+ + + + + G++I
Sbjct: 215 LTILLITHE--MDVVKRICDCVAVISNGELI 243
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 145 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQ 204
+SGGQK+RV + K L D+ ++ LD +TT I++ L+ I TIL+ +
Sbjct: 164 LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILL-ITH 222
Query: 205 PAPETFDLFDDIILLSEGQIVYQ 227
+ D + ++S G+++ Q
Sbjct: 223 EMDVVKRICDCVAVISNGELIEQ 245
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 43/178 (24%), Positives = 81/178 (45%), Gaps = 15/178 (8%)
Query: 709 EMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRI 768
++ + G + +L +++ G L G++GAGKTTL+++L + G + +
Sbjct: 23 QLDQIGRXKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPA--TSGTVNL 80
Query: 769 SG-FPKK----QETFARISGYCEQNDIHSPQV--TVKESLIYSAFLRLAKEVSKEDKIIF 821
G P K ET + G+ + + Q V + +I AF + +D+I
Sbjct: 81 FGKXPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRN 140
Query: 822 -VEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLD 878
+++ LV + +G LS +++R+ IA L P ++ +DEP +GLD
Sbjct: 141 EAHQLLKLVGXSAKAQQYIGY-----LSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
Score = 34.3 bits (77), Expect = 0.44, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 145 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLD--SSTTYQIVKCLQQIVHVTDATILMSL 202
+S G+K+RV + G + L +DE + GLD + + + + T A I ++
Sbjct: 162 LSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAXIYVTH 221
Query: 203 LQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234
E F I+LL +GQ + QG E +L
Sbjct: 222 F--IEEITANFSKILLLKDGQSIQQGAVEDIL 251
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/240 (21%), Positives = 99/240 (41%), Gaps = 24/240 (10%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARI 781
+L ++ + PG L+G +G+GK+TL+ EG+I+I G T +
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVSWDSITLEQW 92
Query: 782 SGYCEQNDIHSPQVTVKESLIYSAFLR--LAKEVSKEDKIIFVEEVMDLVELESLKDAIV 839
+ V ++ I+S R L + D+ I+ +V D V L S+ +
Sbjct: 93 R--------KAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIW--KVADEVGLRSVIEQFP 142
Query: 840 G------LPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 893
G + G LS ++ + +A +++ I+ +DEP++ LD I+ RT++
Sbjct: 143 GKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF 202
Query: 894 DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVIEYYEAIPGVPKIK 953
++C + I+ D+ L+++ Y L + + G PK+
Sbjct: 203 ADCTVILC---EARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGFIGSPKMN 259
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 91/215 (42%), Gaps = 18/215 (8%)
Query: 731 RPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGD------IRISGFPKKQETFARISGY 784
+ G++ ++G +G GKTT + +LAG+ E + IR + Q F R+
Sbjct: 115 KDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN- 173
Query: 785 CEQNDIHSPQ-VTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPG 843
E + PQ V + + L K+V + K F E V +L L + L G
Sbjct: 174 GEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGK--FEEVVKELELENVLDRELHQLSG 231
Query: 844 VTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 903
+ +R+ IA L+ F DEP+S LD R V R +R + G+ V+
Sbjct: 232 ------GELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVE 285
Query: 904 HQPSI-DIFEAFDELLLLKRGGQVIYSGPLG-RNS 936
H ++ D ++ + G I+S P G RN
Sbjct: 286 HDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRNG 320
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 85/211 (40%), Gaps = 40/211 (18%)
Query: 730 FRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPKKQETFARISGYCEQ 787
R G + ++G +G GKTT + +LAG T G +E D+ ++
Sbjct: 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVA------------------ 420
Query: 788 NDIHSPQVTVK--ESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVT 845
+ PQ E +Y ++ + SK + + E++ + + L D V
Sbjct: 421 ---YKPQYIKAEYEGTVYELLSKI--DSSKLNSNFYKTELLKPLGIIDLYDR-----NVE 470
Query: 846 GLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 905
LS + +R+ IA L+ + I +DEP++ LD V R +R+ ++ +
Sbjct: 471 DLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH 530
Query: 906 PSIDIFEAFDELLLLKRGGQVIYSGPLGRNS 936
+ I D L +++ G GR+
Sbjct: 531 DVLMIDYVSDRL--------IVFEGEPGRHG 553
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 52/223 (23%), Positives = 100/223 (44%), Gaps = 20/223 (8%)
Query: 713 QGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP 772
Q VAE L ++ R G + L+G +GAGK+TL+ AG +G +G I+ +G P
Sbjct: 8 QDVAESTR--LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG---KGSIQFAGQP 62
Query: 773 KKQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELE 832
+ + +++ +H ++ +++ ++ + + + DK E + D+
Sbjct: 63 LEAWSATKLA-------LHRAYLSQQQTPPFATPVWHYLTLHQHDK-TRTELLNDVAGAL 114
Query: 833 SLKDAIVGLPGVTGLSIEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDARAAAIVMR 887
+L D + QR RL V + ANP+ ++ +DEP + LD + + +
Sbjct: 115 ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDK 174
Query: 888 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930
+ G +V + H + + A LL +GG+ + SG
Sbjct: 175 ILSALCQQGLAIVXSSHDLNHTLRHAHRAWLL--KGGKXLASG 215
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 91/207 (43%), Gaps = 20/207 (9%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARI 781
+L ++ G L A+ G +GAGKT+L+ ++ G EG I+ SG RI
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 71
Query: 782 SGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGL 841
S +C Q P T+KE++I ++ E I + D+ + + ++G
Sbjct: 72 S-FCSQFSWIMPG-TIKENIIGVSY----DEYRYRSVIKACQLEEDISKFAEKDNIVLGE 125
Query: 842 PGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 901
G+T LS QR R+++A + + + +D P LD + + + +T +
Sbjct: 126 GGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 184
Query: 902 TIHQPSIDIFEAFDELLLLKRGGQVIY 928
+ ++ + D++L+L G Y
Sbjct: 185 VTSK--MEHLKKADKILILHEGSSYFY 209
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 79/185 (42%), Gaps = 16/185 (8%)
Query: 731 RPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGD------IRISGFPKKQETFARISGY 784
+ G++ ++G +G GKTT + +LAG+ E + IR + Q F R+
Sbjct: 101 KDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN- 159
Query: 785 CEQNDIHSPQ-VTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPG 843
E + PQ V + + L K+V + K F E V +L L + L G
Sbjct: 160 GEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGK--FEEVVKELELENVLDRELHQLSG 217
Query: 844 VTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 903
+ +R+ IA L+ F DEP+S LD R V R +R + G+ V+
Sbjct: 218 ------GELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVE 271
Query: 904 HQPSI 908
H ++
Sbjct: 272 HDLAV 276
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 85/212 (40%), Gaps = 40/212 (18%)
Query: 730 FRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPKKQETFARISGYCEQ 787
R G + ++G +G GKTT + +LAG T G +E D+ ++
Sbjct: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVA------------------ 406
Query: 788 NDIHSPQVTVK--ESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVT 845
+ PQ E +Y ++ + SK + + E++ + + L D V
Sbjct: 407 ---YKPQYIKAEYEGTVYELLSKI--DSSKLNSNFYKTELLKPLGIIDLYDR-----NVE 456
Query: 846 GLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 905
LS + +R+ IA L+ + I +DEP++ LD V R +R+ ++ +
Sbjct: 457 DLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH 516
Query: 906 PSIDIFEAFDELLLLKRGGQVIYSGPLGRNSH 937
+ I D L +++ G GR+
Sbjct: 517 DVLMIDYVSDRL--------IVFEGEPGRHGR 540
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 90/207 (43%), Gaps = 19/207 (9%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARI 781
+L + G + A+ G +G+GKT+L+ ++ G EG I+ SG R+
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSG---------RV 101
Query: 782 SGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGL 841
S +C Q P T+KE++I+ E + + + D+ + + ++G
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIFGVSY---DEYRYKSVVKACQLQQDITKFAEQDNTVLGE 156
Query: 842 PGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 901
GVT LS QR R+++A + + + +D P LD V + + +T +
Sbjct: 157 GGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRIL 215
Query: 902 TIHQPSIDIFEAFDELLLLKRGGQVIY 928
+ ++ D++L+L +G Y
Sbjct: 216 VTSK--MEHLRKADKILILHQGSSYFY 240
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 90/208 (43%), Gaps = 21/208 (10%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARI 781
+L ++ G L A+ G +GAGKT+L+ ++ G EG I+ SG RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 782 SGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIV-G 840
S +C Q P T+KE++I + S E++ E KD IV G
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIAGVSYDEYRYRSVIKACQLEEDISKFAE----KDNIVLG 155
Query: 841 LPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 900
G+T LS QR R+++A + + + +D P LD + + + +T +
Sbjct: 156 EGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 214
Query: 901 CTIHQPSIDIFEAFDELLLLKRGGQVIY 928
+ ++ + D++L+L G Y
Sbjct: 215 LVTSK--MEHLKKADKILILHEGSSYFY 240
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 90/207 (43%), Gaps = 19/207 (9%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARI 781
+L + G + A+ G +G+GKT+L+ ++ G EG I+ SG R+
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSG---------RV 101
Query: 782 SGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGL 841
S +C Q P T+KE++I+ E + + + D+ + + ++G
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIFGVSY---DEYRYKSVVKACQLQQDITKFAEQDNTVLGE 156
Query: 842 PGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 901
GVT LS QR R+++A + + + +D P LD V + + +T +
Sbjct: 157 GGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRIL 215
Query: 902 TIHQPSIDIFEAFDELLLLKRGGQVIY 928
+ ++ D++L+L +G Y
Sbjct: 216 VTSK--MEHLRKADKILILHQGSSYFY 240
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 52/223 (23%), Positives = 100/223 (44%), Gaps = 20/223 (8%)
Query: 713 QGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP 772
Q VAE L ++ R G + L+G +GAGK+TL+ AG +G +G I+ +G P
Sbjct: 8 QDVAESTR--LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG---KGSIQFAGQP 62
Query: 773 KKQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELE 832
+ + +++ +H ++ +++ ++ + + + DK E + D+
Sbjct: 63 LEAWSATKLA-------LHRAYLSQQQTPPFATPVWHYLTLHQHDK-TRTELLNDVAGAL 114
Query: 833 SLKDAIVGLPGVTGLSIEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDARAAAIVMR 887
+L D + QR RL V + ANP+ ++ +DEP + LD + + +
Sbjct: 115 ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDK 174
Query: 888 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930
+ G +V + H + + A LL +GG+ + SG
Sbjct: 175 ILSALSQQGLAIVXSSHDLNHTLRHAHRAWLL--KGGKXLASG 215
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 17/167 (10%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARIS 782
LN +T + G L A++G G GK++L+ L +EG + I G A I
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKGSVAYVPQQAWI- 77
Query: 783 GYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLP 842
QND +++E++++ L +E I + DL L S +G
Sbjct: 78 ----QND------SLRENILFGCQL---EEPYYRSVIQACALLPDLEILPSGDRTEIGEK 124
Query: 843 GVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 889
GV LS Q++R+++A + +N I D+P S +DA + V
Sbjct: 125 GVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENV 170
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 91/207 (43%), Gaps = 20/207 (9%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARI 781
+L + G + A+ G +G+GKT+L+ ++ G EG I+ SG R+
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSG---------RV 101
Query: 782 SGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGL 841
S +C Q P T+KE++I ++ E + + + D+ + + ++G
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIGVSY----DEYRYKSVVKACQLQQDITKFAEQDNTVLGE 155
Query: 842 PGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 901
GVT LS QR R+++A + + + +D P LD V + + +T +
Sbjct: 156 GGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRIL 214
Query: 902 TIHQPSIDIFEAFDELLLLKRGGQVIY 928
+ ++ D++L+L +G Y
Sbjct: 215 VTSK--MEHLRKADKILILHQGSSYFY 239
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 853 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 905
++L IA L+ NP + +DEPTSGLD A V + ++ G T++ + H
Sbjct: 153 RKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHN 205
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 89/207 (42%), Gaps = 19/207 (9%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARI 781
+L + G + A+ G +G+GKT+L+ ++ G EG I+ SG R+
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSG---------RV 101
Query: 782 SGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGL 841
S +C Q P T+KE++I E + + + D+ + + ++G
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIRGVSY---DEYRYKSVVKACQLQQDITKFAEQDNTVLGE 156
Query: 842 PGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 901
GVT LS QR R+++A + + + +D P LD V + + +T +
Sbjct: 157 GGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRIL 215
Query: 902 TIHQPSIDIFEAFDELLLLKRGGQVIY 928
+ ++ D++L+L +G Y
Sbjct: 216 VTSK--MEHLRKADKILILHQGSSYFY 240
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 88/207 (42%), Gaps = 19/207 (9%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARI 781
+L ++ G L A+ G +GAGKT+L+ ++ G EG I+ SG RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 782 SGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGL 841
S +C Q P T+KE++I+ + S E++ E KD IV
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAE----KDNIVLG 155
Query: 842 PGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 901
G LS Q+ ++++A + + + +D P LD + + + +T +
Sbjct: 156 EGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 215
Query: 902 TIHQPSIDIFEAFDELLLLKRGGQVIY 928
+ ++ + D++L+L G Y
Sbjct: 216 VTSK--MEHLKKADKILILHEGSSYFY 240
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 89/207 (42%), Gaps = 19/207 (9%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARI 781
+L + G + A+ G +G+GKT+L+ ++ G EG I+ SG R+
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSG---------RV 101
Query: 782 SGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGL 841
S +C Q P T+KE++I E + + + D+ + + ++G
Sbjct: 102 S-FCSQFSWIMPG-TIKENIISGVSY---DEYRYKSVVKACQLQQDITKFAEQDNTVLGE 156
Query: 842 PGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 901
GVT LS QR R+++A + + + +D P LD V + + +T +
Sbjct: 157 GGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRIL 215
Query: 902 TIHQPSIDIFEAFDELLLLKRGGQVIY 928
+ ++ D++L+L +G Y
Sbjct: 216 VTSK--MEHLRKADKILILHQGSSYFY 240
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 11/100 (11%)
Query: 839 VGLPGVTGLSIEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 895
+G P T LS + +R+ +A EL ++ +DEPT+GL A ++ + VD
Sbjct: 839 LGQPATT-LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897
Query: 896 GRTVVCTIHQPSIDIFEAFDELLLL-----KRGGQVIYSG 930
G TV+ H ++D+ + D ++ L RGGQ++ G
Sbjct: 898 GDTVLVIEH--NLDVIKTADYIIDLGPEGGDRGGQIVAVG 935
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 82/169 (48%), Gaps = 12/169 (7%)
Query: 770 GFPKKQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLV 829
G+ K+E+ A + G ++ + VT E+L + L L ++ ++ ++I E L
Sbjct: 429 GYRLKKESLAVLVGGKHIGEVTAMSVT--EALAFFDGLELTEKEAQIARLILREIRDRLG 486
Query: 830 ELESLKDAIVGLPGVTG-LSIEQRKRLTIAVELVANPSIIF--MDEPTSGLDARAAAIVM 886
L+++ + L G LS + +R+ +A ++ + + + +DEP+ GL R ++
Sbjct: 487 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLI 546
Query: 887 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK-----RGGQVIYSG 930
T+++ D G T++ H D A D L+ + GG+V+ +G
Sbjct: 547 ATLKSMRDLGNTLIVVEHDE--DTMLAADYLIDIGPGAGIHGGEVVAAG 593
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 11/100 (11%)
Query: 839 VGLPGVTGLSIEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 895
+G P T LS + +R+ +A EL ++ +DEPT+GL A ++ + VD
Sbjct: 839 LGQPATT-LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897
Query: 896 GRTVVCTIHQPSIDIFEAFDELLLL-----KRGGQVIYSG 930
G TV+ H ++D+ + D ++ L RGGQ++ G
Sbjct: 898 GDTVLVIEH--NLDVIKTADYIIDLGPEGGDRGGQIVAVG 935
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 82/169 (48%), Gaps = 12/169 (7%)
Query: 770 GFPKKQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLV 829
G+ K+E+ A + G ++ + VT E+L + L L ++ ++ ++I E L
Sbjct: 429 GYRLKKESLAVLVGGKHIGEVTAXSVT--EALAFFDGLELTEKEAQIARLILREIRDRLG 486
Query: 830 ELESLKDAIVGLPGVTG-LSIEQRKRLTIAVELVANPSIIF--MDEPTSGLDARAAAIVM 886
L+++ + L G LS + +R+ +A ++ + + + +DEP+ GL R ++
Sbjct: 487 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLI 546
Query: 887 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK-----RGGQVIYSG 930
T+++ D G T++ H D A D L+ + GG+V+ +G
Sbjct: 547 ATLKSXRDLGNTLIVVEHDE--DTXLAADYLIDIGPGAGIHGGEVVAAG 593
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 11/100 (11%)
Query: 839 VGLPGVTGLSIEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 895
+G P T LS + +R+ +A EL ++ +DEPT+GL A ++ + VD
Sbjct: 537 LGQPATT-LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 595
Query: 896 GRTVVCTIHQPSIDIFEAFDELLLL-----KRGGQVIYSG 930
G TV+ H ++D+ + D ++ L RGGQ++ G
Sbjct: 596 GDTVLVIEH--NLDVIKTADYIIDLGPEGGDRGGQIVAVG 633
Score = 30.8 bits (68), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 20/143 (13%)
Query: 794 QVTVKESLIYSAFLRLAKEVSKEDKIIFVEEV-MDLVELESLKDAIVGLPGVTGLSIEQR 852
++T KE+ I LR + D++ F++ V +D + L + G QR
Sbjct: 163 ELTEKEAQIARLILREIR-----DRLGFLQNVGLDYLTLSRSAGTLSG-------GEAQR 210
Query: 853 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 912
RL + + +DEP+ GL R ++ T+++ D G T++ H D
Sbjct: 211 IRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE--DTML 268
Query: 913 AFDELLLLK-----RGGQVIYSG 930
A D L+ + GG+V+ +G
Sbjct: 269 AADYLIDIGPGAGIHGGEVVAAG 291
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 91/207 (43%), Gaps = 20/207 (9%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARI 781
+L ++ G L A+ G +GAGKT+L+ ++ G EG I+ SG RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 782 SGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGL 841
S +C Q P T+KE++I ++ E I + D+ + + ++G
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIGVSY----DEYRYRSVIKACQLEEDISKFAEKDNIVLGE 155
Query: 842 PGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 901
G+T LS Q+ ++++A + + + +D P LD + + + +T +
Sbjct: 156 GGIT-LSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 214
Query: 902 TIHQPSIDIFEAFDELLLLKRGGQVIY 928
+ ++ + D++L+L G Y
Sbjct: 215 VTSK--MEHLKKADKILILHEGSSYFY 239
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 38.1 bits (87), Expect = 0.036, Method: Composition-based stats.
Identities = 46/182 (25%), Positives = 88/182 (48%), Gaps = 26/182 (14%)
Query: 738 LMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP-KKQETFARISGYCEQNDIHSPQVT 796
++G +G+GKTTL+ ++G G+I I+G +K + R S + + VT
Sbjct: 35 ILGPNGSGKTTLLRAISGLLP---YSGNIFINGMEVRKIRNYIRYS--TNLPEAYEIGVT 89
Query: 797 VKESLIYSAFLRLAKEVSKEDKIIFVE--EVMDLVELESLKDAIVGLPGVTGLSIEQRKR 854
V + ++Y L +E+ D+ +F+E + + L E E L+ + L G S+ R
Sbjct: 90 VND-IVY-----LYEELKGLDRDLFLEMLKALKLGE-EILRRKLYKLSA--GQSVLVRTS 140
Query: 855 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 914
L +A + P I+ +DEP +DA ++ R ++ + G+ + H+ +D+ +
Sbjct: 141 LALA----SQPEIVGLDEPFENVDAARRHVISRYIK---EYGKEGILVTHE--LDMLNLY 191
Query: 915 DE 916
E
Sbjct: 192 KE 193
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 37.4 bits (85), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 68/157 (43%), Gaps = 26/157 (16%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARI 781
LLN+ + + G +G GK+TLM +A + + GFP ++E
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQ----------VDGFPTQEECR--- 496
Query: 782 SGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGL 841
+ Y E + + T ++ + + KE K+ I F D ++ +
Sbjct: 497 TVYVEHDIDGTHSDTSVLDFVFESGVG-TKEAIKDKLIEF-----------GFTDEMIAM 544
Query: 842 PGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLD 878
P ++ LS + +L +A ++ N I+ +DEPT+ LD
Sbjct: 545 P-ISALSGGWKMKLALARAVLRNADILLLDEPTNHLD 580
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 737 ALMGVSGAGKTTLMDVLAGR--KTGG--YIEGDIRISGFPKKQETFARISGYCEQ 787
A++G +GAGK+TL++VL G T G Y + RI+ KQ FA I + ++
Sbjct: 703 AVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYI--KQHAFAHIESHLDK 755
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Query: 794 QVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRK 853
+V +KE+L F L ++ E+ + + L IV + GLS Q+
Sbjct: 860 EVDMKEALASGQFRPLTRK-----------EIEEHCSMLGLDPEIVSHSRIRGLSGGQKV 908
Query: 854 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 890
+L +A P +I +DEPT+ LD + + + ++
Sbjct: 909 KLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALK 945
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 37.4 bits (85), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 14/110 (12%)
Query: 839 VGLPGVTGLSIEQRKRLTIAVELVANPS---IIFMDEPTSGLDARAAAIVMRTVRNTVDT 895
+G P T LS + +R+ +A EL + + +DEPT GL ++ + VD
Sbjct: 799 LGQPATT-LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDR 857
Query: 896 GRTVVCTIHQPSIDIFEAFDELLLL-----KRGGQVIYSG---PLGRNSH 937
G TV+ H ++D+ + D ++ L K GG ++ +G + +N H
Sbjct: 858 GNTVIVIEH--NLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPH 905
Score = 33.9 bits (76), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 851 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 908
QR RL + I +DEPT GL R +++T++ D G TV+ H +
Sbjct: 471 QRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEV 528
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 37.0 bits (84), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 16/141 (11%)
Query: 851 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI 910
QR RL + + +DEP+ GL R ++ T+ D G T++ H D
Sbjct: 528 QRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDE--DT 585
Query: 911 FEAFDELLLL-----KRGGQVIYSGP---LGRNSHKVIEYY----EAIPGVPKIKEKYNP 958
E D ++ + + GG++++SGP L RN + Y E+I +P I+ +P
Sbjct: 586 IEHADWIVDIGPGAGEHGGRIVHSGPYDELLRNKDSITGAYLSGRESIE-IPAIRRSVDP 644
Query: 959 ATWMLEVSSAAAEVRLGMDFA 979
+ V + +R G+D +
Sbjct: 645 RRQLTVVGAREHNLR-GIDVS 664
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 839 VGLPGVTGLSIEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 895
+G P T LS + +R+ +A EL ++ +DEPT+GL ++ + VD
Sbjct: 857 LGQPAPT-LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDK 915
Query: 896 GRTVVCTIHQPSIDIFEAFD 915
G TV+ H ++D+ + D
Sbjct: 916 GNTVIVIEH--NLDVIKTSD 933
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMD-- 751
++ ++ VD ++ G E LR ++ +F GVL ++ GVSG+GK+TL++
Sbjct: 632 SIEIPAIRRSVDPRRQLTVVGAREHNLRGID---VSFPLGVLTSVTGVSGSGKSTLVNDI 688
Query: 752 ---VLAGRKTG 759
VLA R G
Sbjct: 689 LAAVLANRLNG 699
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 36.6 bits (83), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Query: 847 LSIEQRKRLTIAVELVAN--PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 904
LS + +RL +A +L +N + +DEP++GL ++ + N G ++ H
Sbjct: 380 LSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEH 439
Query: 905 QPSIDIFEAFDELLLL-----KRGGQVIYSGP 931
+D+ D L+ + ++GG+++YSGP
Sbjct: 440 --DLDVIRRADWLVDVGPEAGEKGGEILYSGP 469
Score = 34.3 bits (77), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 14/127 (11%)
Query: 816 EDKIIFVEEVMDLVELESLKDAIVGL----PGVTGLSIEQRKRLTIAVELVANP---SII 868
E F +E L++L++ +G T LS + +R+ +A EL + ++
Sbjct: 696 EAHDFFADESAIFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVY 755
Query: 869 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLL-----KRG 923
+DEPT+GL + R + VD G TV+ H+ + + A D +L + + G
Sbjct: 756 VLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHK--MQVVAASDWVLDIGPGAGEDG 813
Query: 924 GQVIYSG 930
G+++ G
Sbjct: 814 GRLVAQG 820
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 36.6 bits (83), Expect = 0.10, Method: Composition-based stats.
Identities = 43/184 (23%), Positives = 85/184 (46%), Gaps = 22/184 (11%)
Query: 709 EMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRI 768
E+++ V DK +L +T G + G +G GKTTL+ ++ ++G+I
Sbjct: 12 EIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP--LKGEIIY 68
Query: 769 SGFPKKQETFARISG---YCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEV 825
+G P ++ G + + I +++V++ L A L K V+K E+
Sbjct: 69 NGVP-----ITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVK-VNK-------NEI 115
Query: 826 MDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 885
MD +E + D L ++ +I +R+ +A L+ N I +D+P +D + V
Sbjct: 116 MDALESVEVLDLKKKLGELSQGTI---RRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKV 172
Query: 886 MRTV 889
++++
Sbjct: 173 LKSI 176
>pdb|3L39|A Chain A, Crystal Structure Of Putative Phou-Like Phosphate
Regulatory Protein (Bt4638) From Bacteroides
Thetaiotaomicron Vpi-5482 At 1.93 A Resolution
Length = 227
Score = 33.9 bits (76), Expect = 0.65, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 31/53 (58%)
Query: 870 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 922
MD+ G+++ A IV+ R ++G+ + IH+ +I+I +A DEL ++
Sbjct: 103 MDDVIDGINSSAKRIVIYNPRPISESGKELSRLIHEEAINIGKAMDELETFRK 155
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 33.5 bits (75), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 847 LSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 887
LS ++R+ IA+ L+ +P ++ +DEPTS LD A +++
Sbjct: 155 LSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQ 195
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 65/157 (41%), Gaps = 26/157 (16%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARI 781
LLN+ + + G +G GK+TL +A + + GFP ++E
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQ----------VDGFPTQEECR--- 496
Query: 782 SGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGL 841
+ Y E + + T ++ + + KE K+ I F D +
Sbjct: 497 TVYVEHDIDGTHSDTSVLDFVFESGVG-TKEAIKDKLIEF-----------GFTDEXIAX 544
Query: 842 PGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLD 878
P ++ LS + +L +A ++ N I+ +DEPT+ LD
Sbjct: 545 P-ISALSGGWKXKLALARAVLRNADILLLDEPTNHLD 580
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 737 ALMGVSGAGKTTLMDVLAGR--KTGG--YIEGDIRISGFPKKQETFARISGYCEQ 787
A++G +GAGK+TL++VL G T G Y + RI+ KQ FA I + ++
Sbjct: 703 AVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYI--KQHAFAHIESHLDK 755
Score = 31.2 bits (69), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 11/97 (11%)
Query: 794 QVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRK 853
+V KE+L F L ++ E+ + L IV + GLS Q+
Sbjct: 860 EVDXKEALASGQFRPLTRK-----------EIEEHCSXLGLDPEIVSHSRIRGLSGGQKV 908
Query: 854 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 890
+L +A P +I +DEPT+ LD + + + ++
Sbjct: 909 KLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALK 945
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 65/157 (41%), Gaps = 26/157 (16%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARI 781
LLN+ + + G +G GK+TL +A + + GFP ++E
Sbjct: 444 LLNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQ----------VDGFPTQEECR--- 490
Query: 782 SGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGL 841
+ Y E + + T ++ + + KE K+ I F D +
Sbjct: 491 TVYVEHDIDGTHSDTSVLDFVFESGVG-TKEAIKDKLIEF-----------GFTDEXIAX 538
Query: 842 PGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLD 878
P ++ LS + +L +A ++ N I+ +DEPT+ LD
Sbjct: 539 P-ISALSGGWKXKLALARAVLRNADILLLDEPTNHLD 574
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 737 ALMGVSGAGKTTLMDVLAGR--KTGG--YIEGDIRISGFPKKQETFARISGYCEQ 787
A++G +GAGK+TL++VL G T G Y + RI+ KQ FA I + ++
Sbjct: 697 AVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYI--KQHAFAHIESHLDK 749
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 11/97 (11%)
Query: 794 QVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRK 853
+V KE+L F L ++ E+ + L IV + GLS Q+
Sbjct: 854 EVDXKEALASGQFRPLTRK-----------EIEEHCSXLGLDPEIVSHSRIRGLSGGQKV 902
Query: 854 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 890
+L +A P +I +DEPT+ LD + + + ++
Sbjct: 903 KLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALK 939
>pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp
Length = 592
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 28/40 (70%), Gaps = 3/40 (7%)
Query: 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTG 759
L++L+ +T +P V+ A++G+ GK+ LM+ LAG+K G
Sbjct: 28 LKILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKKKG 64
>pdb|2B8W|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B8W|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B92|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2B92|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2BC9|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Non-Hydrolysable Gtp Analogue Gppnhp
pdb|2D4H|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
pdb|2D4H|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
Length = 328
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 29/42 (69%), Gaps = 3/42 (7%)
Query: 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTG 759
+ L++L+ +T +P V+ A++G+ GK+ LM+ LAG+K G
Sbjct: 37 EALKILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKKKG 75
>pdb|1D9K|B Chain B, Crystal Structure Of Complex Between D10 Tcr And Pmhc I-AkCA
pdb|1D9K|F Chain F, Crystal Structure Of Complex Between D10 Tcr And Pmhc I-AkCA
Length = 112
Score = 31.6 bits (70), Expect = 2.8, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 962 MLEVSSAAAEVRLGMDFADAYKSSSLCQRNKALVNELSTPPRGAKDLYFATQYSQSTWGQ 1021
++ S A G D D YK+S Q N +L+ EL+TP + + +YF Q Q
Sbjct: 43 LIHYSYGAGSTEKG-DIPDGYKASRPSQENFSLILELATPSQTS--VYFCASGGQGRAEQ 99
Query: 1022 F 1022
F
Sbjct: 100 F 100
>pdb|3SOJ|A Chain A, Francisella Tularensis Pilin Pile
pdb|3SOJ|B Chain B, Francisella Tularensis Pilin Pile
Length = 115
Score = 30.4 bits (67), Expect = 6.6, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 159 IVGPTKTLFMDEISTGLD-SSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDII 217
I+G K ++I+ LD S TY + + ATI ++L Q +P+ F +DII
Sbjct: 16 IIGNVKASIQNDINNNLDISQQTYDTPTGVTVTGSTSGATIDINLSQTSPQHFTNDNDII 75
Query: 218 LLS 220
LS
Sbjct: 76 RLS 78
>pdb|4I96|A Chain A, Crystal Structure Of The N-terminal Two Domains Of The
Skeletal Muscle Ryanodine Receptor (rabbit Ryr1)
Residues 217-536
Length = 320
Score = 30.0 bits (66), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 664 NELSRNDDSNLEAAKGVAPKRGMVLPFTPLAMSFDSVYYYVDMPPEMKEQGVAEDKLRLL 723
N+ + DS +G P G LP + +S + Y + P E + + KLR L
Sbjct: 196 NQFIKGLDSFSGKPRGSGPPAGPALPIEAVILSLQDLIGYFEPPSEELQHEEKQSKLRSL 255
Query: 724 NEVTSAFR-PGVLAALM 739
S F+ G+L+ ++
Sbjct: 256 RNRQSLFQEEGMLSLVL 272
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,687,553
Number of Sequences: 62578
Number of extensions: 1312952
Number of successful extensions: 3083
Number of sequences better than 100.0: 119
Number of HSP's better than 100.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 2792
Number of HSP's gapped (non-prelim): 258
length of query: 1297
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1187
effective length of database: 8,089,757
effective search space: 9602541559
effective search space used: 9602541559
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)