Query 000760
Match_columns 1297
No_of_seqs 309 out of 5093
Neff 8.6
Searched_HMMs 29240
Date Tue Mar 26 17:21:51 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000760.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_530-534//hhsearch_pdb/000760hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 1.0 1 1 651.5 45.7 214 694-932 1076-1299(1321)
2 3g5u_A MCG1178, multidrug resi 1.0 1 1 585.5 52.0 214 694-932 1030-1253(1284)
3 3bk7_A ABC transporter ATP-bin 1.0 1 1 445.5 33.1 188 722-934 371-560 (607)
4 3ozx_A RNAse L inhibitor; ATP 1.0 1 1 439.9 30.6 203 721-946 282-486 (538)
5 1yqt_A RNAse L inhibitor; ATP- 1.0 1 1 436.3 31.7 188 722-934 301-490 (538)
6 3ux8_A Excinuclease ABC, A sub 1.0 1 1 428.6 32.8 199 1-234 46-297 (670)
7 2iw3_A Elongation factor 3A; a 1.0 1 1 426.7 32.9 169 1-234 463-634 (986)
8 3j16_B RLI1P; ribosome recycli 1.0 1 1 421.3 29.2 201 721-946 361-568 (608)
9 3pih_A Uvrabc system protein A 1.0 1 1 351.6 29.0 198 720-933 597-898 (916)
10 2r6f_A Excinuclease ABC subuni 1.0 1 1 335.8 30.7 196 721-932 638-937 (972)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=651.48 Aligned_cols=214 Identities=28% Similarity=0.389 Sum_probs=175.6
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCC
Q ss_conf 77995359999589410123544454410010267895881999987999709999999969999981478999949118
Q 000760 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1297)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~ 773 (1297)
.++|+|+++.++.. .+..+|+|+|+.++|||.+||+||||||||||+++|.|..+ +.+|+|.+||.+.
T Consensus 1076 ~I~f~nVsf~Y~~~----------~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p~~G~I~iDG~di 1143 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPER----------PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD--TLGGEIFIDGSEI 1143 (1321)
T ss_dssp CEEEEEEEECCTTS----------CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC--CSSSEEEETTEET
T ss_pred EEEEEEEEEECCCC----------CCCCCCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEH
T ss_conf 18999879857999----------98821245169988989999989999819999999956863--8997899999986
Q ss_pred CH---HHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC-------CCCCCCCCCC
Q ss_conf 92---1002438996369988999999999999997026879999999999999997629800-------0010026999
Q 000760 774 KQ---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES-------LKDAIVGLPG 843 (1297)
Q Consensus 774 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~~g~~~ 843 (1297)
+. ..+++.++||||++.++.. |+|||+.|.. -+...+.++ +.++++..++.+ -.|+.+|..+
T Consensus 1144 ~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gl---d~~~~sd~e----i~~Al~~a~l~~~I~~Lp~GldT~vge~G 1215 (1321)
T 4f4c_A 1144 KTLNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGL---DPSSVTMAQ----VEEAARLANIHNFIAELPEGFETRVGDRG 1215 (1321)
T ss_dssp TTBCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSS---CTTTSCHHH----HHHHHHHTTCHHHHHTSTTTTCSEETTTS
T ss_pred HHCCHHHHHHHEEEECCCCEEECC-CHHHHHHCCC---CCCCCCHHH----HHHHHHHHCCHHHHHCCCCCCCCEECCCC
T ss_conf 549999998545998789973272-3999974549---999999999----99999982984999717678999823889
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHEEEECC
Q ss_conf 88779889999999999951996679949999999999999999999987489989999268999999997361033529
Q 000760 844 VTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 923 (1297)
Q Consensus 844 ~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~v~~l~~~ 923 (1297)
..+|||||||++|||+|+++|+||+||||||+||+.++..|++.|+++. +|||+|+++|+++ ....+|++++|. +
T Consensus 1216 -~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLs--Ti~~aD~I~Vld-~ 1290 (1321)
T 4f4c_A 1216 -TQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLN--TVMNADCIAVVS-N 1290 (1321)
T ss_dssp -CSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSS--TTTTCSEEEEES-S
T ss_pred -CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCHH--HHHHCCEEEEEE-C
T ss_conf -1569999999999999971799899968111578999999999999973-9998999606899--999699999998-9
Q ss_pred CEEEEECCC
Q ss_conf 699994699
Q 000760 924 GQVIYSGPL 932 (1297)
Q Consensus 924 g~~~~~g~~ 932 (1297)
|+++..|++
T Consensus 1291 G~IvE~Gth 1299 (1321)
T 4f4c_A 1291 GTIIEKGTH 1299 (1321)
T ss_dssp SSEEEEECH
T ss_pred CEEEEECCH
T ss_conf 899998888
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=585.49 Aligned_cols=214 Identities=26% Similarity=0.384 Sum_probs=168.2
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCC
Q ss_conf 77995359999589410123544454410010267895881999987999709999999969999981478999949118
Q 000760 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1297)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~ 773 (1297)
.+.++|+++.++.. .+..+|+|+|+.++|||++||+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 1030 ~i~~~~v~~~y~~~----------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~--p~~G~I~i~g~~i 1097 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTR----------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD--PMAGSVFLDGKEI 1097 (1284)
T ss_dssp CEEEEEEEBCCSCG----------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC--CSEEEEESSSSCT
T ss_pred CEEEEEEEEECCCC----------CCCEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEEC
T ss_conf 57999989977999----------98700203059976998899988999978999999946867--8997798999980
Q ss_pred CH---HHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC-------CCCCCCCCCCCC
Q ss_conf 92---10024389963699889999999999999970268799999999999999976298-------000010026999
Q 000760 774 KQ---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVEL-------ESLKDAIVGLPG 843 (1297)
Q Consensus 774 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l-------~~~~~~~~g~~~ 843 (1297)
+. ...++.++||+|++.++ ..|++||+.+... ....+.++ +.+.++..++ .+-.|+.+|..
T Consensus 1098 ~~~~~~~~r~~i~~v~Q~~~l~-~~ti~eNi~~~~~---~~~~~~~~----i~~~~~~~~~~~~i~~l~~gldt~vge~- 1168 (1284)
T 3g5u_A 1098 KQLNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDN---SRVVSYEE----IVRAAKEANIHQFIDSLPDKYNTRVGDK- 1168 (1284)
T ss_dssp TSSCHHHHTTSCEEEESSCCCC-SSBHHHHHTCCCS---SCCCCHHH----HHHHHHHHTCHHHHSSTTTGGGCBCSTT-
T ss_pred CCCCHHHHHHCEEEECCCCCCC-CCCHHHHHHCCCC---CCCCCHHH----HHHHHHHHCCHHHHHHCCCCCCCCCCCC-
T ss_conf 0078999970268987787406-6669999746687---78999999----9999998395999972704245611788-
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHEEEECC
Q ss_conf 88779889999999999951996679949999999999999999999987489989999268999999997361033529
Q 000760 844 VTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 923 (1297)
Q Consensus 844 ~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~v~~l~~~ 923 (1297)
...||||||||++||++|+++|++|+|||||+|||+.++..+++.+++. .+|+|+|+++|+++ .+ ..+|++++|. +
T Consensus 1169 G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~-~i-~~~dri~vl~-~ 1244 (1284)
T 3g5u_A 1169 GTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLS-TI-QNADLIVVIQ-N 1244 (1284)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTT-GG-GSCSEEEEEE-T
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCHH-HH-HCCCEEEEEE-C
T ss_conf 8933899999999999997499999986875557999999999999986-79998999955879-99-8099899998-9
Q ss_pred CEEEEECCC
Q ss_conf 699994699
Q 000760 924 GQVIYSGPL 932 (1297)
Q Consensus 924 g~~~~~g~~ 932 (1297)
|+++..|++
T Consensus 1245 G~i~~~g~~ 1253 (1284)
T 3g5u_A 1245 GKVKEHGTH 1253 (1284)
T ss_dssp BEEEEEECH
T ss_pred CEEEEECCH
T ss_conf 989997789
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=1.00 E-value=1 Score=445.46 Aligned_cols=188 Identities=25% Similarity=0.294 Sum_probs=154.9
Q ss_pred EEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHCCCEEEEECCCCCCCCCCCHHHHH
Q ss_conf 00102678958819999879997099999999699999814789999491189210024389963699889999999999
Q 000760 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVKESL 801 (1297)
Q Consensus 722 iL~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l 801 (1297)
.|+.+++.+++||+++|+||||||||||+++|+|...+ .+|+|.+ ...++|++|+....+.+||.|++
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~~ 438 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKVEW----------DLTVAYKPQYIKAEYEGTVYELL 438 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBSCCCC----------CCCEEEECSSCCCCCSSBHHHHH
T ss_pred EEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCEEEEE----------EEEEEEEECCCCCCCCCCHHHHH
T ss_conf 89935153279989999999998999999999669888--8628999----------02799980576677898499999
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHH
Q ss_conf 99997026879999999999999997629800001002699988779889999999999951996679949999999999
Q 000760 802 IYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 881 (1297)
Q Consensus 802 ~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~ 881 (1297)
........ ....+++++++.+++.+..+..++ .||||||||++||++|+.+|++|+|||||+|||..+
T Consensus 439 ~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~ 506 (607)
T 3bk7_A 439 SKIDSSKL-------NSNFYKTELLKPLGIIDLYDRNVE-----DLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQ 506 (607)
T ss_dssp HHHHHHHH-------HCHHHHHHTHHHHTCTTTTTSBGG-----GCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHH
T ss_pred HHHHCCCC-------CHHHHHHHHHHHCCCCHHHCCCHH-----HCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHH
T ss_conf 75312587-------789999999987699337549922-----379999999999999974899899968744789999
Q ss_pred HHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHHHHEEEEC-CCEEEEECCCCC
Q ss_conf 9999999999874-8998999926899999999736103352-969999469998
Q 000760 882 AAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKR-GGQVIYSGPLGR 934 (1297)
Q Consensus 882 ~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fd~v~~l~~-~g~~~~~g~~~~ 934 (1297)
...+.++|+++++ .|+|||+++|++. .+....|++++|.. .|++...|++.+
T Consensus 507 ~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p~~ 560 (607)
T 3bk7_A 507 RLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPPMG 560 (607)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEECCCCCEEEECCCHHH
T ss_conf 999999999999747989999909899-999869999999598306974289899
No 4
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=439.86 Aligned_cols=203 Identities=22% Similarity=0.230 Sum_probs=158.2
Q ss_pred CEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHCCCEEEEECCCCCCCCCCCHHHH
Q ss_conf 10010267895881999987999709999999969999981478999949118921002438996369988999999999
Q 000760 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVKES 800 (1297)
Q Consensus 721 ~iL~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~ 800 (1297)
..|+.+++.+++||+++|+||||||||||+++|+|...+ .+|+|.+++. .++|++|+.......||+|+
T Consensus 282 ~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~~~---------~i~~~~q~~~~~~~~tv~~~ 350 (538)
T 3ozx_A 282 FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA--DEGSVTPEKQ---------ILSYKPQRIFPNYDGTVQQY 350 (538)
T ss_dssp EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SBCCEESSCC---------CEEEECSSCCCCCSSBHHHH
T ss_pred EEEEECCCEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCE---------EEEEECHHCCCCCCCCHHHH
T ss_conf 899826646889989999999999899999999578889--9818999984---------56761400034547779999
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHH
Q ss_conf 99999702687999999999999999762980000100269998877988999999999995199667994999999999
Q 000760 801 LIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 880 (1297)
Q Consensus 801 l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~ 880 (1297)
+.+... .. .. . ....++++++.+++.+..+..++ .||||||||++||++|+.+|++|+|||||+|||..
T Consensus 351 l~~~~~-~~-~~-~---~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~ 419 (538)
T 3ozx_A 351 LENASK-DA-LS-T---SSWFFEEVTKRLNLHRLLESNVN-----DLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVE 419 (538)
T ss_dssp HHHHCS-ST-TC-T---TSHHHHHTTTTTTGGGCTTSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHH
T ss_pred HHHHHH-HC-CC-H---HHHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH
T ss_conf 987553-11-21-1---69999999987599778628932-----27999999999999997089989996986579999
Q ss_pred HHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHHHHEEEECC-CEEEEECCCCCCHHHHHHHHHHC
Q ss_conf 99999999999874-89989999268999999997361033529-69999469998917899999839
Q 000760 881 AAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRG-GQVIYSGPLGRNSHKVIEYYEAI 946 (1297)
Q Consensus 881 ~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fd~v~~l~~~-g~~~~~g~~~~~~~~~~~~f~~~ 946 (1297)
+...+.+.|+++++ .|.|||+++|+.. ++....|++++|..+ |.....+++.........++...
T Consensus 420 ~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (538)
T 3ozx_A 420 ERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATSPVTLKTGMNEFLREL 486 (538)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEECCCCCHHHHHHHHHHHHHHC
T ss_conf 9999999999999738989999958899-999968999999698510116798477887888887416
No 5
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=1.00 E-value=1 Score=436.31 Aligned_cols=188 Identities=25% Similarity=0.293 Sum_probs=154.2
Q ss_pred EEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHCCCEEEEECCCCCCCCCCCHHHHH
Q ss_conf 00102678958819999879997099999999699999814789999491189210024389963699889999999999
Q 000760 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVKESL 801 (1297)
Q Consensus 722 iL~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l 801 (1297)
.|+++++.+++||+++|+||||||||||+++|+|...+ .+|+|.+ ...++|++|+....+.+||.|++
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~~ 368 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKIEW----------DLTVAYKPQYIKADYEGTVYELL 368 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBCCCCC----------CCCEEEECSSCCCCCSSBHHHHH
T ss_pred EEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCEEEEE----------CCEEEEEECCCCCCCCCCHHHHH
T ss_conf 99907441289989999889999999999999679989--9718998----------74699982677678888599999
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHH
Q ss_conf 99997026879999999999999997629800001002699988779889999999999951996679949999999999
Q 000760 802 IYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 881 (1297)
Q Consensus 802 ~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEptsgLD~~~ 881 (1297)
........ . ....++++++.+++.+..+..++ .||||||||++||++|+.+|++|+|||||+|||..+
T Consensus 369 ~~~~~~~~----~---~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~ 436 (538)
T 1yqt_A 369 SKIDASKL----N---SNFYKTELLKPLGIIDLYDREVN-----ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQ 436 (538)
T ss_dssp HHHHHHHH----T---CHHHHHHTTTTTTCGGGTTSBGG-----GCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHH
T ss_pred HHHHCCCC----C---HHHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHH
T ss_conf 86403688----7---89999999997499156539944-----489999999999999972899899939801089999
Q ss_pred HHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHHHHEEEEC-CCEEEEECCCCC
Q ss_conf 9999999999874-8998999926899999999736103352-969999469998
Q 000760 882 AAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKR-GGQVIYSGPLGR 934 (1297)
Q Consensus 882 ~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fd~v~~l~~-~g~~~~~g~~~~ 934 (1297)
...+.+.|+++++ .|.|||+++|++. ++....|++++|.. .|+++..|++.+
T Consensus 437 ~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~~~ 490 (538)
T 1yqt_A 437 RLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPPMG 490 (538)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEEEECCCHHH
T ss_conf 999999999999867989999939899-999968999999088315740489899
No 6
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=1.00 E-value=1 Score=428.62 Aligned_cols=199 Identities=22% Similarity=0.251 Sum_probs=139.5
Q ss_pred CEEEECCCCCCHHHHH---------------------HHHHCCCCCCCC----EEEEEEECCEECCCCCCCCEEEEECCC
Q ss_conf 9898379999968989---------------------898289899972----347999888306876555416656544
Q 000760 1 MTLLLGPPSSGKTTLL---------------------LALAGKLNRDLK----VRGEITYNGYRLNEFVPQKTSAYISQN 55 (1297)
Q Consensus 1 lt~IlG~sGsGKSTLL---------------------~~L~G~~~~~~~----~~G~V~inG~~~~~~~~~~~~~yv~Q~ 55 (1297)
+++|+||||||||||+ +++.|...|+.. ..|.+.++|.+.... .++.++|++|.
T Consensus 46 ~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~~~-~~~~ig~v~q~ 124 (670)
T 3ux8_A 46 LVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTSRN-PRSTVGTVTEI 124 (670)
T ss_dssp EEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC------CCBHHHHTTC
T ss_pred EEEEECCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEECCCCCEEECCCHHHCC-CHHCEEEEECH
T ss_conf 99998999999888715101232111000110024455530345677563213564157447201025-50000465112
Q ss_pred CCC-------------------CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 455-------------------7888989999999550288851235468579865208997257879998742012231
Q 000760 56 DVH-------------------VGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVES 116 (1297)
Q Consensus 56 d~l-------------------~~~lTVrE~l~f~a~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (1297)
..+ ++.+||+|++.+....... ..+.... ... ..+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~-----------~~~~~~~---~~~-----------~~~~ 179 (670)
T 3ux8_A 125 YDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELT-----------EKEAQIA---RLI-----------LREI 179 (670)
T ss_dssp C-------------------------CC---------------------------------------------------C
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC-----------HHHHHHH---HHH-----------HHHH
T ss_conf 56677777531111234443334578599999975203643-----------1456778---888-----------9999
Q ss_pred HHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC--EEEEECCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 1019999999299544-67533688653366232114689999846981--87763798550289899999999999760
Q 000760 117 SLITDYTLKILGLDIC-KDTIVGDEMNRGISGGQKKRVTTGEMIVGPTK--TLFMDEISTGLDSSTTYQIVKCLQQIVHV 193 (1297)
Q Consensus 117 ~~~~~~~l~~lgL~~~-~dT~VG~~~~~~LSGGQKqRlsIA~aL~~~p~--IllLDEPTSgLD~~sa~~i~~~L~~l~~~ 193 (1297)
.. .-..++.+||.+. .+..++ .|||||||||+||+||+.+|+ +++|||||+|||+.++..+++.|+.+.+
T Consensus 180 ~~-~~~~l~~~gL~~~~~~~~~~-----~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~- 252 (670)
T 3ux8_A 180 RD-RLGFLQNVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD- 252 (670)
T ss_dssp HH-HHHHHHHTTCTTCCTTCBGG-----GSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHH-
T ss_pred HH-HHHHHHHCCCCHHHHCCCCC-----CCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-
T ss_conf 99-99899975984344149700-----189999999999999962899878999798568999999999999999997-
Q ss_pred CCCEEEEEECCCCHHHHHHCCCEEEE------CCCEEEEECCCCHHH
Q ss_conf 89889999627984699620127886------499089886710389
Q 000760 194 TDATILMSLLQPAPETFDLFDDIILL------SEGQIVYQGPRERVL 234 (1297)
Q Consensus 194 ~~~tvI~~i~qp~~~~~~lfD~IiiL------~~G~vv~~G~~~~l~ 234 (1297)
.+.|+|+..|.. +....+|+|++| .+|++++.|+.+++.
T Consensus 253 ~g~tvi~vtHd~--~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 253 LGNTLIVVEHDE--DTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp TTCEEEEECCCH--HHHHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred CCCEEEEEECCH--HHHHHCCEEEEECCCCCCCCCEEEEECCHHHHH
T ss_conf 499899995787--999629989994466656698899740899986
No 7
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=1.00 E-value=1 Score=426.69 Aligned_cols=169 Identities=19% Similarity=0.259 Sum_probs=131.9
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCEECCCCCCCCEEEEECCCC-CCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 98983799999689898982898999723479998883068765554166565444-55788898999999955028885
Q 000760 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQND-VHVGEMTVKETLDFSARCLGVGT 79 (1297)
Q Consensus 1 lt~IlG~sGsGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~~~~~~~~yv~Q~d-~l~~~lTVrE~l~f~a~~~~~~~ 79 (1297)
+++|+|||||||||||++|+| |++ +|.+... +...+|++|+. .+++.+||.|++.+ ...+
T Consensus 463 ~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~---~~~~~~v~q~~~~~~~~ltv~e~l~~--~~~~--- 523 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE---ECRTVYVEHDIDGTHSDTSVLDFVFE--SGVG--- 523 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT---TSCEEETTCCCCCCCTTSBHHHHHHT--TCSS---
T ss_pred EEEEECCCCCCHHHHHHHHHC---------CCC--CCCCCCC---CEEEEEECCCCCCCCCCCCHHHHHHH--HHCC---
T ss_conf 899999999879999999948---------986--7976635---41699973564324557809999998--6127---
Q ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 123546857986520899725787999874201223110199999992995-4467533688653366232114689999
Q 000760 80 RYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLD-ICKDTIVGDEMNRGISGGQKKRVTTGEM 158 (1297)
Q Consensus 80 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dT~VG~~~~~~LSGGQKqRlsIA~a 158 (1297)
. ...++.+++.+||. +..+..++ .||||||||++||++
T Consensus 524 -------~-----------------------------~~~v~~~L~~lgL~~~~~~~~~~-----~LSGGqkQRvaLArA 562 (986)
T 2iw3_A 524 -------T-----------------------------KEAIKDKLIEFGFTDEMIAMPIS-----ALSGGWKMKLALARA 562 (986)
T ss_dssp -------C-----------------------------HHHHHHHHHHTTCCHHHHHSBGG-----GCCHHHHHHHHHHHH
T ss_pred -------H-----------------------------HHHHHHHHHHCCCCHHHHCCCCC-----CCCHHHHHHHHHHHH
T ss_conf -------9-----------------------------99999999986998446439802-----079999999999999
Q ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEE-EECCCCHHH
Q ss_conf 8469818776379855028989999999999976089889999627984699620127886499089-886710389
Q 000760 159 IVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIV-YQGPRERVL 234 (1297)
Q Consensus 159 L~~~p~IllLDEPTSgLD~~sa~~i~~~L~~l~~~~~~tvI~~i~qp~~~~~~lfD~IiiL~~G~vv-~~G~~~~l~ 234 (1297)
++.+|+|++|||||+|||+.++..+++.|+. .+.|+|+..|+ ..++...+|+|++|.+|+++ +.|+.+++.
T Consensus 563 L~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~tvIivSHd-l~~l~~~adrii~L~~G~iv~~~G~~~e~~ 634 (986)
T 2iw3_A 563 VLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGITSITISHD-SVFLDNVCEYIINYEGLKLRKYKGNFTEFV 634 (986)
T ss_dssp HHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCSEEEEECSC-HHHHHHHCSEEEEEETTEEEEEESCHHHHH
T ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHH----CCCEEEEEECC-HHHHHHHCCEEEEEECCEEECCCCCHHHHH
T ss_conf 9649999999797667999999999999986----79989999798-899998689999997994426779999998
No 8
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=421.32 Aligned_cols=201 Identities=19% Similarity=0.221 Sum_probs=154.7
Q ss_pred CEEEEEEEEEECC-----EEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHCCCEEEEECCCCCCCCCC
Q ss_conf 1001026789588-----19999879997099999999699999814789999491189210024389963699889999
Q 000760 721 RLLNEVTSAFRPG-----VLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQV 795 (1297)
Q Consensus 721 ~iL~~vs~~~~~G-----~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~l 795 (1297)
.+++++++.+++| |+++|+||||||||||+++|+|..++. +|+. .. ...++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~--~G~~------~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD--EGQD------IP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS--BCCC------CC----SCCEEEECSSCCCCCCS
T ss_pred CCCCCEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCC--CCCC------CC----CCCEEEECCCCCCCCCC
T ss_conf 446865899706851465189998888986999999996578787--8858------66----77379860544445786
Q ss_pred CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 99999999997026879999999999999997629800001002699988779889999999999951996679949999
Q 000760 796 TVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTS 875 (1297)
Q Consensus 796 tv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEpts 875 (1297)
||+|++... .+ ..... ...++++++.+++.+..+..++ .||||||||++||++|+.+|++|+|||||+
T Consensus 429 tv~e~~~~~--~~--~~~~~---~~~~~~~l~~l~l~~~~~~~~~-----~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKK--IR--GQFLN---PQFQTDVVKPLRIDDIIDQEVQ-----HLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHH--CS--STTTS---HHHHHHTHHHHTSTTTSSSBSS-----SCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred CHHHHHHHH--HH--CCCCC---HHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 699999877--53--03246---8999999987498346519932-----389999999999999973899999989888
Q ss_pred CCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHHHHEEEEC-CCEEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9999999999999999874-8998999926899999999736103352-969999469998917899999839
Q 000760 876 GLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKR-GGQVIYSGPLGRNSHKVIEYYEAI 946 (1297)
Q Consensus 876 gLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fd~v~~l~~-~g~~~~~g~~~~~~~~~~~~f~~~ 946 (1297)
|||+.+...+.++|+++++ .|.|||+++|+.. ++....|++++|.. .|+++..|++.+.......+...+
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~~~~~~~~ 568 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNL 568 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEEEECCCHHHHHHHHHHHHHHC
T ss_conf 899999999999999999757998999968899-999868999999589873774298699863046899754
No 9
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=351.56 Aligned_cols=198 Identities=28% Similarity=0.418 Sum_probs=144.3
Q ss_pred CCEEEEEEEEEECCEEEEEECCCCCCHHHHH---------HHHHCCCC-CC---CEE------EEEEECCCCCCHHH---
Q ss_conf 4100102678958819999879997099999---------99969999-98---147------89999491189210---
Q 000760 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLM---------DVLAGRKT-GG---YIE------GDIRISGFPKKQET--- 777 (1297)
Q Consensus 720 ~~iL~~vs~~~~~G~~~~i~G~sGsGKsTLl---------~~l~g~~~-~~---~~~------G~i~~~g~~~~~~~--- 777 (1297)
...|++||+.+++|++++|+|+||||||||+ +.+.+... .+ ... +.+.+++.+.....
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~ 676 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN 676 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred CCCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC
T ss_conf 44336531287189599999258888154577777789998740344566653333551011425763156556655556
Q ss_pred ------------------------------C-----------CCEEEEECCCCCCCC-----------------------
Q ss_conf ------------------------------0-----------243899636998899-----------------------
Q 000760 778 ------------------------------F-----------ARISGYCEQNDIHSP----------------------- 793 (1297)
Q Consensus 778 ------------------------------~-----------~~~~~~v~q~~~~~~----------------------- 793 (1297)
+ ....|++.++..+++
T Consensus 677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~ 756 (916)
T 3pih_A 677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY 756 (916)
T ss_dssp HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred CCCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCCHHHHHHHH
T ss_conf 43022367889998612668775045554311114666443236763487741016761563220146435666554301
Q ss_pred ---------CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf ---------999999999999702687999999999999999762980000-1002699988779889999999999951
Q 000760 794 ---------QVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLK-DAIVGLPGVTGLSIEQRKRLTIAVELVA 863 (1297)
Q Consensus 794 ---------~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~-~~~~g~~~~~~lSgGqr~r~~ia~~l~~ 863 (1297)
.+||+|++.|... . ....++.++++.+||.... +.. ...||||||||+.||++|+.
T Consensus 757 ~g~~i~~vl~~tv~eal~f~~~------~---~~~~~~~~~L~~vGL~~~~lgq~-----~~~LSGGErQRV~LAraL~~ 822 (916)
T 3pih_A 757 KGKNISDILDMTVDEALEFFKN------I---PSIKRTLQVLHDVGLGYVKLGQP-----ATTLSGGEAQRIKLASELRK 822 (916)
T ss_dssp TTBCHHHHHSSBHHHHHHHTTT------C---HHHHHHHHHHHHTTGGGSBTTCC-----STTCCHHHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHCCHHHHHHHHHC------C---HHHHHHHHHHHHCCCCHHHCCCC-----CCCCCHHHHHHHHHHHHHHH
T ss_conf 5677787740779999998751------5---05899999999818863331687-----15799999999999999962
Q ss_pred CC---CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHEEEE-----CCCEEEEECCCC
Q ss_conf 99---66799499999999999999999999874899899992689999999973610335-----296999946999
Q 000760 864 NP---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK-----RGGQVIYSGPLG 933 (1297)
Q Consensus 864 ~p---~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~v~~l~-----~~g~~~~~g~~~ 933 (1297)
+| ++++|||||+|||+.+...+++.|+++++.|.|||+++|++ +.....|++++|. ++|++++.|+++
T Consensus 823 ~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL--~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpe 898 (916)
T 3pih_A 823 RDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNL--DVIKNADHIIDLGPEGGKEGGYIVATGTPE 898 (916)
T ss_dssp CCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH--HHHTTCSEEEEEESSSGGGCCEEEEEESHH
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCH--HHHHHCCEEEEECCCCCCCCCEEEEECCHH
T ss_conf 8788978999798889999999999999999996699899993799--999729999996687777897899976999
No 10
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=1.00 E-value=1 Score=335.84 Aligned_cols=196 Identities=30% Similarity=0.409 Sum_probs=145.0
Q ss_pred CEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHH-C--------C-CCCC---CEEE------EEEECCCCCCHHH----
Q ss_conf 1001026789588199998799970999999996-9--------9-9998---1478------9999491189210----
Q 000760 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLA-G--------R-KTGG---YIEG------DIRISGFPKKQET---- 777 (1297)
Q Consensus 721 ~iL~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~-g--------~-~~~~---~~~G------~i~~~g~~~~~~~---- 777 (1297)
..|++||+.+++|++++|+|+||||||||++.+. | . ...| .+.| .|.+++.+.....
T Consensus 638 ~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~p 717 (972)
T 2r6f_A 638 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNP 717 (972)
T ss_dssp SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCH
T ss_pred CCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCC
T ss_conf 56466259986898999992799988999999999999876247777888501422643445389975844466755560
Q ss_pred -------------C-----CCEEEEECCCCCC----------------------CC------------------------
Q ss_conf -------------0-----2438996369988----------------------99------------------------
Q 000760 778 -------------F-----ARISGYCEQNDIH----------------------SP------------------------ 793 (1297)
Q Consensus 778 -------------~-----~~~~~~v~q~~~~----------------------~~------------------------ 793 (1297)
+ .+..||++|...+ .+
T Consensus 718 aty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~ 797 (972)
T 2r6f_A 718 ATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYK 797 (972)
T ss_dssp HHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHCCCCCCCCCCCCCCCCCCCHHHHHHCC
T ss_conf 12213789999986118898872545432443555565521246650341011166531002112464334022333106
Q ss_pred --------CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf --------9999999999997026879999999999999997629800-0010026999887798899999999999519
Q 000760 794 --------QVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES-LKDAIVGLPGVTGLSIEQRKRLTIAVELVAN 864 (1297)
Q Consensus 794 --------~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~ 864 (1297)
.+|+.|++.|... . .. ..++.++++.++|.. ..+..+. .||||||||+.||++|+.+
T Consensus 798 g~sI~dvl~ltv~e~l~~~~~------~-~~--~~~~~~~L~~~gL~~~~l~~~~~-----~LSGGekQRv~LAraL~~~ 863 (972)
T 2r6f_A 798 GKNIAEVLDMTVEDALDFFAS------I-PK--IKRKLETLYDVGLGYMKLGQPAT-----TLSGGEAQRVKLAAELHRR 863 (972)
T ss_dssp TBCHHHHHTSBHHHHHHHTCS------C-HH--HHHHHHHHHHTTCSSSBTTCCGG-----GCCHHHHHHHHHHHHHSSC
T ss_pred CCCHHHHHHCCHHHHHHHHHC------C-HH--HHHHHHHHHHCCCCCCCCCCCHH-----HCCHHHHHHHHHHHHHHCC
T ss_conf 777787650679999998751------3-36--89999999985998211027040-----1999999999999999538
Q ss_pred C---CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHEEEE-----CCCEEEEECCC
Q ss_conf 9---66799499999999999999999999874899899992689999999973610335-----29699994699
Q 000760 865 P---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK-----RGGQVIYSGPL 932 (1297)
Q Consensus 865 p---~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~v~~l~-----~~g~~~~~g~~ 932 (1297)
| ++++|||||+|||+.+...+++.|+++++.|.|||+++|+. +.....|++++|. ++|++++.|++
T Consensus 864 p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl--~~i~~aDrIivL~p~gG~~~G~Iv~~g~~ 937 (972)
T 2r6f_A 864 SNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNL--DVIKTADYIIDLGPEGGDRGGQIVAVGTP 937 (972)
T ss_dssp CCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH--HHHTTCSEEEEECSSSTTSCCSEEEEESH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH--HHHHHCCEEEEECCCCCCCCCEEEEECCH
T ss_conf 889988999798789999999999999999996799899986887--99984999999767777789889986599
Done!